Citrus Sinensis ID: 000951

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------1030------1040------1050------1060------1070------1080------1090------1100------1110------1120------1130------1140------1150------1160------1170------1180------1190------1200------1210-
Protein Sequence
MEKSIYTLLTIDRWESLNHMEYKLASLRPVHGRLALKFLNWVMNQPGLELKHLTHILCLTTHVLVKTRMYEDAKLILRQLAQMGIGQNSVFGSLMNTYPLCNSNPSVFDLLIRVYLREGMVEYALETFQLMGFRGFNPSVYTCNMMLSFMLKDRRVDSVWLLFDDMLDRKICPNVATFNILINVSCVEGKLKKAGYLLRKMEESGYVPNIVTYNTLLNWYCKKGRYKAAFKLIDCMASKGIEADVCTYNMFIDDLCRNNRSAKGYLLLKNMRKRMITPNEVTYNTLINGFVKEGKIQVASRVFDEMSMLNFSPNSITYNELIDGHCCKGNFKEAFRLLAMMEEMGLRPNEVSYGALLNGFCKHAKFDLARSLLERMRTNGISISCIAYTSVIDGLCKCGLLDEAMQLFNKMFKDGLNPDLITFSVLINGFCKVGMTRKAKAVLCKMYRDGLVPNKIIYSTLIYYFCKMGKVTEAMKVYAVMNRNAQGSDHFTCNMLVASLCKGGKVCEAEDYVGHMKRIGVVPNSITFDCMIDGYGTLGDGLKAFSMFDEMVKLGHHPSIFTYGSLLKGLCKGGNLKEAKRFLNSLHHIPSAVDTVAYNTILAETCKSGNLWEAIVLLDEMVQFNLLPDRYTYTILLAGLCRKGKVVSALLFFEKVVSKRTFSPNNVMFTCLVDGLFKAGQSKAAMHISKIMDKEGVYPDTIAFNAVMDGFSRMGNMMMANDLLSTMRSRKLCPSLATYNILLHGYSKKKDLLMCSMLLNTMKMEGLLPDKLTCHSLILGFCETGMLEVGFKFLKKMIAEGTMVDCFTFNVLMRKCCEAGEMGKAFDLFNIMNMLGVVPDTNTQDAIIMGLKRIAAFQESHFVLRGMAEKGLTPKCTQYITLINGMCRVGNFQGAFKLKDEMEALGISSSDVAESAMVRGLAHCGKVEEAMLVLNRMLRMRLVPTIATFTTLIHKFCKEAKFVDALKLKGTMELSGVKLDVVSYNVLISGLCANGDVMPAFELYEEMKHKGLCPNSTTYSVLIDAISKKENNLVKGEILLKDIQERGFISWNWDGSTQHLHEGLINALRKLKSFKKNRRNNAKIDPTFMEALPEDLLAEVLASQQASSIAQGLAHHGEGQPVDMDNASVIATFPADLCEEKLFCPCCLLHYLLKLIYQGSKQRVIIGPAVSLEEVMKKVEEQTVMDKGVGVTIGRRAASAIADSLKGRKLK
Secondary Structure (PSIPRED)
cHHHHHHHHcccccccHHHHHHHHHHcccccHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccHHHHHHHHHcccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccccHHHHHHHHHHHcccHHHHHHHHHHHHHccccccccHHHHHHHHHHHcccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccccHHHHHHHHHHccccHHHHHHHHHHHHHccccccccHHHHHHHHHHHcccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccHHHHHHHHHHHHccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccHHHHHHHHHHHHccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHcccHHHHHHcccccccccHHcccHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHccccccHHHHHcccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHccccccccHHHHHHHHHHcccHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccccHHHHHHHHHHcccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccEHHHHHHHHHHHHcccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHcccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccEHHHHHHHHHHHHcccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHcccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccccccHHHHHHHHHHHccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHccccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHcccHHHHHHHcccHHHHHHHHHHcccccccccHHHHHHHHHHHHHcccHHHHHHHHHHHcccccccccEHHHHccHHHHHHHHHHHHHHcccEEEEcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccc
Coil and Loop (DISEMBL)
MEKSIYTLLTIDRWESLNHMEYKLASLRPVHGRLALKFLNWvmnqpglelkhlTHILCLTTHVLVKTRMYEDAKLILRQLAQMgigqnsvfgslmntyplcnsnpsvFDLLIRVYLREGMVEYALETFQLmgfrgfnpsvYTCNMMLSFMLKDRRVDSVWLLFDDmldrkicpnvatFNILINVSCVEGKLKKAGYLLRKMeesgyvpnivTYNTLLNWYCKKGRYKAAFKLIDCMAskgieadvcTYNMFIDDLCRNNRSAKGYLLLKNMRkrmitpnevtYNTLINGFVKEGKIQVASRVFDEmsmlnfspnsitynelidghcckgNFKEAFRLLAMMEEMglrpnevsYGALLNGFCKHAKFDLARSLLERMRTNGISISCIAYTSVIDGLCKCGLLDEAMQLFNKMFkdglnpdliTFSVLINGFCKVGMTRKAKAVLCKMyrdglvpnkIIYSTLIYYFCKMGKVTEAMKVYAVMNrnaqgsdhfTCNMLVASLckggkvceaedyvghmkrigvvpnsitfdcmidgygtlgdgLKAFSMFDEMVklghhpsiftyGSLLKGLCKGGNLKEAKRFLNSlhhipsavdTVAYNTILAETCKSGNLWEAIVLLDEMVqfnllpdryTYTILLAGLCRKGKVVSALLFFEKVVSkrtfspnnvmFTCLVDGLFKAGQSKAAMHISKImdkegvypdtiAFNAVMDGFSRMGNMMMANDLLSTmrsrklcpslATYNILLHGYSKKKDLLMCSMLLNTMkmegllpdkltchSLILGFCETGMLEVGFKFLKKMIAEGTMVDCFTFNVLMRKCceagemgkaFDLFNIMNMlgvvpdtntqDAIIMGLKRIAAFQESHFVLRgmaekgltpkcTQYITLINGMcrvgnfqgafkLKDEMEALGISSSDVAESAMVRGLAHCGKVEEAMLVLNRMLRMRLVPTIATFTTLIHKFCKEAKFVDalklkgtmelsgvKLDVVSYNVLISglcangdvmpAFELYEEmkhkglcpnsttYSVLIDAISKKENNLVKGEILLKDIQErgfiswnwdgstqHLHEGLINALRKLKSFKKnrrnnakidptfmeaLPEDLLAEVLASQQASSIAQGLahhgegqpvdmdnasviatfpadlceeklfcpcclLHYLLKLIYQgskqrviiGPAVSLEEVMKKVEEQTVMDKGVGVTIGRRAASAIADslkgrklk
Flexible Loop (DISEMBL)
MEKSIYTLLTIDRWESLNHMEYKLASLRPVHGRLALKFLNWVMNQPGLELKHLTHILCLTTHVLVKTRMYEDAKLILRQLAQMGIGQNSVFGSLMNTYPLCNSNPSVFDLLIRVYLREGMVEYALETFQLMGFRGFNPSVYTCNMMLSFMLKDRRVDSVWLLFDDMLDRKICPNVATFNILINVSCVEGKLKKAGYLLRKMeesgyvpniVTYNTLLNWYCKKGRYKAAFKLIDCMASKGIEADVCTYNMFIDDLCRNNRSAKGYLLLKNMRKRMITPNEVTYNTLINGFVKEGKIQVASRVFDEMSMLNFSPNSITYNELIDGHCCKGNFKEAFRLLAMMEEMGLRPNEVSYGALLNGFCKHAKFDLARSLLERMRTNGISISCIAYTSVIDGLCKCGLLDEAMQLFNKMFKDGLNPDLITFSVLINGFCKVGMTRKAKAVLCKMYRDGLVPNKIIYSTLIYYFCKMGKVTEAMKVYAVMNRNAQGSDHFTCNMLVASLCKGGKVCEAEDYVGHMKRIGVVPNSITFDCMIDGYGTLGDGLKAFSMFDEMVKLGHHPSIFTYGSLLKGLCKGGNLKEAKRFLNSLHHIPSAVDTVAYNTILAETCKSGNLWEAIVLLDEMVQFNLLPDRYTYTILLAGLCRKGKVVSALLFFEKVvskrtfspnNVMFTCLVDGLFKAGQSKAAMHISKIMDKEGVYPDTIAFNAVMDGFSRMGNMMMANDLLSTMRSRKLCPSLATYNILLHGYSKKKDLLMCSMLLNTMKMEGLLPDKLTCHSLILGFCETGMLEVGFKFLKKMIAEGTMVDCFTFNVLMRKCCEAGEMGKAFDLFNIMNMLGVVPDTNTQDAIIMGLKRIAAFQESHFVLRGMAEKGLTPKCTQYITLINGMCRVGNFQGAFKLKDEMEALGISSSDVAESAMVRGLAHCGKVEEAMLVLNRMLRMRLVPTIATFTTLIHKFCKEAKFVDALKLKGTMELSGVKLDVVSYNVLISGLCANGDVMPAFELYEEMKHKGLCPNSTTYSVLIDAISKKENNLVKGEILLKDIQERGFISWNWDGSTQHLHEGLINALRKLKSFKKNRRNNAKIDPTFMEALPEDLLAEVLASQQASSIAQGLAHHGEGQPVDMDNASVIATFPADLCEEKLFCPCCLLHYLLKLIYQGSKQRVIIGPAVSLEEVMKKVeeqtvmdkgvgvtigrraasaiadslkgrklk
Low Complexity Region (SEG)
MEKSIYTLLTIDRWESLNHMEYKLASLRPVHGRLALKFLNWVMNQPGLELKHLTHILCLTTHVLVKTRMYEDAKLILRQLAQMGIGQNSVFGSLMNTYPLCNSNPSVFDLLIRVYLREGMVEYALETFQLMGFRGFNPSVYTCNMMLSFMLKDRRVDSVWLLFDDMLDRKICPNVATFNILINVSCVEGKLKKAGYLLRKMEESGYVPNIVTYNTLLNWYCKKGRYKAAFKLIDCMASKGIEADVCTYNMFIDDLCRNNRSAKGYLLLKNMRKRMITPNEVTYNTLINGFVKEGKIQVASRVFDEMSMLNFSPNSITYNELIDGHCCKGNFKEAFRLLAMMEEMGLRPNEVSYGALLNGFCKHAKFDLARSLLERMRTNGISISCIAYTSVIDGLCKCGLLDEAMQLFNKMFKDGLNPDLITFSVLINGFCKVGMTRKAKAVLCKMYRDGLVPNKIIYSTLIYYFCKMGKVTEAMKVYAVMNRNAQGSDHFTCNMLVASLCKGGKVCEAEDYVGHMKRIGVVPNSITFDCMIDGYGTLGDGLKAFSMFDEMVKLGHHPSIFTYgsllkglckggnlkEAKRFLNSLHHIPSAVDTVAYNTILAETCKSGNLWEAIVLLDEMVQFNLLPDRYTYTILLAGLCRKGKVVSALLFFEKVVSKRTFSPNNVMFTCLVDGLFKAGQSKAAMHISKIMDKEGVYPDTIAFNAVMDGFSRMGNMMMANDLLSTMRSRKLCPSLATYNILLHGYSKKKDLLMCSMLLNTMKMEGLLPDKLTCHSLILGFCETGMLEVGFKFLKKMIAEGTMVDCFTFNVLMRKCCEAGEMGKAFDLFNIMNMLGVVPDTNTQDAIIMGLKRIAAFQESHFVLRGMAEKGLTPKCTQYITLINGMCRVGNFQGAFKLKDEMEALGISSSDVAESAMVRGLAHCGKVEEAmlvlnrmlrmrlvPTIATFTTLIHKFCKEAKFVDALKLKGTMELSGVKLDVVSYNVLISGLCANGDVMPAFELYEEMKHKGLCPNSTTYSVLIDAISKKENNLVKGEILLKDIQERGFISWNWDGSTQHLHEGLINALRKLKSFKKNRRNNAKIDPTFMEALPEDLLAEVLASQQASSIAQGLAHHGEGQPVDMDNASVIATFPADLCEEKLFCPCCLLHYLLKLIYQGSKQRVIIGPAVSLEEVMKKVEEQTVMDKGVGVTIGRRAASAIADSLKGRKLK
Disordered region (IsUnstruct)
****IYTLLTIDRWESLNHMEYKLASLRPVHGRLALKFLNWVMNQPGLELKHLTHILCLTTHVLVKTRMYEDAKLILRQLAQMGIGQNSVFGSLMNTYPLCNSNPSVFDLLIRVYLREGMVEYALETFQLMGFRGFNPSVYTCNMMLSFMLKDRRVDSVWLLFDDMLDRKICPNVATFNILINVSCVEGKLKKAGYLLRKMEESGYVPNIVTYNTLLNWYCKKGRYKAAFKLIDCMASKGIEADVCTYNMFIDDLCRNNRSAKGYLLLKNMRKRMITPNEVTYNTLINGFVKEGKIQVASRVFDEMSMLNFSPNSITYNELIDGHCCKGNFKEAFRLLAMMEEMGLRPNEVSYGALLNGFCKHAKFDLARSLLERMRTNGISISCIAYTSVIDGLCKCGLLDEAMQLFNKMFKDGLNPDLITFSVLINGFCKVGMTRKAKAVLCKMYRDGLVPNKIIYSTLIYYFCKMGKVTEAMKVYAVMNRNAQGSDHFTCNMLVASLCKGGKVCEAEDYVGHMKRIGVVPNSITFDCMIDGYGTLGDGLKAFSMFDEMVKLGHHPSIFTYGSLLKGLCKGGNLKEAKRFLNSLHHIPSAVDTVAYNTILAETCKSGNLWEAIVLLDEMVQFNLLPDRYTYTILLAGLCRKGKVVSALLFFEKVVSKRTFSPNNVMFTCLVDGLFKAGQSKAAMHISKIMDKEGVYPDTIAFNAVMDGFSRMGNMMMANDLLSTMRSRKLCPSLATYNILLHGYSKKKDLLMCSMLLNTMKMEGLLPDKLTCHSLILGFCETGMLEVGFKFLKKMIAEGTMVDCFTFNVLMRKCCEAGEMGKAFDLFNIMNMLGVVPDTNTQDAIIMGLKRIAAFQESHFVLRGMAEKGLTPKCTQYITLINGMCRVGNFQGAFKLKDEMEALGISSSDVAESAMVRGLAHCGKVEEAMLVLNRMLRMRLVPTIATFTTLIHKFCKEAKFVDALKLKGTMELSGVKLDVVSYNVLISGLCANGDVMPAFELYEEMKHKGLCPNSTTYSVLIDAISKKENNLVKGEILLKDIQERGFISWNWDGSTQHLHEGLINALRKLKSF*************FM*AL**DLLAEVL***********************DNASVIATFPADLCEEKLFCPCCLLHYLLKLIYQGSKQRVIIGPAVSLEEVMKKVEEQTVMDKGVGVTIGR****************
Disordered Region (DISOPRED)
*EKSIYTLLTIDRWESLNHMEYKLASLRPVHGRLALKFLNWVMNQPGLELKHLTHILCLTTHVLVKTRMYEDAKLILRQLAQMGIGQNSVFGSLMNTYPLCNSNPSVFDLLIRVYLREGMVEYALETFQLMGFRGFNPSVYTCNMMLSFMLKDRRVDSVWLLFDDMLDRKICPNVATFNILINVSCVEGKLKKAGYLLRKMEESGYVPNIVTYNTLLNWYCKKGRYKAAFKLIDCMASKGIEADVCTYNMFIDDLCRNNRSAKGYLLLKNMRKRMITPNEVTYNTLINGFVKEGKIQVASRVFDEMSMLNFSPNSITYNELIDGHCCKGNFKEAFRLLAMMEEMGLRPNEVSYGALLNGFCKHAKFDLARSLLERMRTNGISISCIAYTSVIDGLCKCGLLDEAMQLFNKMFKDGLNPDLITFSVLINGFCKVGMTRKAKAVLCKMYRDGLVPNKIIYSTLIYYFCKMGKVTEAMKVYAVMNRNAQGSDHFTCNMLVASLCKGGKVCEAEDYVGHMKRIGVVPNSITFDCMIDGYGTLGDGLKAFSMFDEMVKLGHHPSIFTYGSLLKGLCKGGNLKEAKRFLNSLHHIPSAVDTVAYNTILAETCKSGNLWEAIVLLDEMVQFNLLPDRYTYTILLAGLCRKGKVVSALLFFEKVVSKRTFSPNNVMFTCLVDGLFKAGQSKAAMHISKIMDKEGVYPDTIAFNAVMDGFSRMGNMMMANDLLSTMRSRKLCPSLATYNILLHGYSKKKDLLMCSMLLNTMKMEGLLPDKLTCHSLILGFCETGMLEVGFKFLKKMIAEGTMVDCFTFNVLMRKCCEAGEMGKAFDLFNIMNMLGVVPDTNTQDAIIMGLKRIAAFQESHFVLRGMAEKGLTPKCTQYITLINGMCRVGNFQGAFKLKDEMEALGISSSDVAESAMVRGLAHCGKVEEAMLVLNRMLRMRLVPTIATFTTLIHKFCKEAKFVDALKLKGTMELSGVKLDVVSYNVLISGLCANGDVMPAFELYEEMKHKGLCPNSTTYSVLIDAISKKENNLVKGEILLKDIQERGFISWNWDGSTQHLHEGLINALRKLKSFKKNRRNNAKIDPTFMEALPEDLLAEVLASQQASSIAQGLAHHGEGQPVDMDNASVIATFPADLCEEKLFCPCCLLHYLLKLIYQGSKQRVIIGPAVSLEEVMKKVEEQTVMDKGVGVTIGRRAASAIADSLKGRK**
Disordered Region (DISEMBL)
MEKSIYTLLTIDRWESLNHMEYKLASLRPVHGRLALKFLNWVMNQPGLELKHLTHILCLTTHVLVKTRMYEDAKLILRQLAQMGIGQNSVFGSLMNTYPLCNSNPSVFDLLIRVYLREGMVEYALETFQLMGFRGFNPSVYTCNMMLSFMLKDRRVDSVWLLFDDMLDRKICPNVATFNILINVSCVEGKLKKAGYLLRKMEESGYVPNIVTYNTLLNWYCKKGRYKAAFKLIDCMASKGIEADVCTYNMFIDDLCRNNRSAKGYLLLKNMRKRMITPNEVTYNTLINGFVKEGKIQVASRVFDEMSMLNFSPNSITYNELIDGHCCKGNFKEAFRLLAMMEEMGLRPNEVSYGALLNGFCKHAKFDLARSLLERMRTNGISISCIAYTSVIDGLCKCGLLDEAMQLFNKMFKDGLNPDLITFSVLINGFCKVGMTRKAKAVLCKMYRDGLVPNKIIYSTLIYYFCKMGKVTEAMKVYAVMNRNAQGSDHFTCNMLVASLCKGGKVCEAEDYVGHMKRIGVVPNSITFDCMIDGYGTLGDGLKAFSMFDEMVKLGHHPSIFTYGSLLKGLCKGGNLKEAKRFLNSLHHIPSAVDTVAYNTILAETCKSGNLWEAIVLLDEMVQFNLLPDRYTYTILLAGLCRKGKVVSALLFFEKVVSKRTFSPNNVMFTCLVDGLFKAGQSKAAMHISKIMDKEGVYPDTIAFNAVMDGFSRMGNMMMANDLLSTMRSRKLCPSLATYNILLHGYSKKKDLLMCSMLLNTMKMEGLLPDKLTCHSLILGFCETGMLEVGFKFLKKMIAEGTMVDCFTFNVLMRKCCEAGEMGKAFDLFNIMNMLGVVPDTNTQDAIIMGLKRIAAFQESHFVLRGMAEKGLTPKCTQYITLINGMCRVGNFQGAFKLKDEMEALGISSSDVAESAMVRGLAHCGKVEEAMLVLNRMLRMRLVPTIATFTTLIHKFCKEAKFVDALKLKGTMELSGVKLDVVSYNVLISGLCANGDVMPAFELYEEMKHKGLCPNSTTYSVLIDAISKKENNLVKGEILLKDIQERGFISWNWDGSTQHLHEGLINALRKLKSFKKNRRNNAKIDPTFMEALPEDLLAEVLASQQASSIAQGLAHHGEGQPVDMDNASVIATFPADLCEEKLFCPCCLLHYLLKLIYQGSKQRVIIGPAVSLEEVMKKVEEQTVMDKGVGVTIGRRAASAIAD********
Disordered Region (DISPRO)
MEKSIYTLLTIDRWESLNHMEYKLASLRPVHGRLALKFLNWVMNQPGLELKHLTHILCLTTHVLVKTRMYEDAKLILRQLAQMGIGQNSVFGSLMNTYPLCNSNPSVFDLLIRVYLREGMVEYALETFQLMGFRGFNPSVYTCNMMLSFMLKDRRVDSVWLLFDDMLDRKICPNVATFNILINVSCVEGKLKKAGYLLRKMEESGYVPNIVTYNTLLNWYCKKGRYKAAFKLIDCMASKGIEADVCTYNMFIDDLCRNNRSAKGYLLLKNMRKRMITPNEVTYNTLINGFVKEGKIQVASRVFDEMSMLNFSPNSITYNELIDGHCCKGNFKEAFRLLAMMEEMGLRPNEVSYGALLNGFCKHAKFDLARSLLERMRTNGISISCIAYTSVIDGLCKCGLLDEAMQLFNKMFKDGLNPDLITFSVLINGFCKVGMTRKAKAVLCKMYRDGLVPNKIIYSTLIYYFCKMGKVTEAMKVYAVMNRNAQGSDHFTCNMLVASLCKGGKVCEAEDYVGHMKRIGVVPNSITFDCMIDGYGTLGDGLKAFSMFDEMVKLGHHPSIFTYGSLLKGLCKGGNLKEAKRFLNSLHHIPSAVDTVAYNTILAETCKSGNLWEAIVLLDEMVQFNLLPDRYTYTILLAGLCRKGKVVSALLFFEKVVSKRTFSPNNVMFTCLVDGLFKAGQSKAAMHISKIMDKEGVYPDTIAFNAVMDGFSRMGNMMMANDLLSTMRSRKLCPSLATYNILLHGYSKKKDLLMCSMLLNTMKMEGLLPDKLTCHSLILGFCETGMLEVGFKFLKKMIAEGTMVDCFTFNVLMRKCCEAGEMGKAFDLFNIMNMLGVVPDTNTQDAIIMGLKRIAAFQESHFVLRGMAEKGLTPKCTQYITLINGMCRVGNFQGAFKLKDEMEALGISSSDVAESAMVRGLAHCGKVEEAMLVLNRMLRMRLVPTIATFTTLIHKFCKEAKFVDALKLKGTMELSGVKLDVVSYNVLISGLCANGDVMPAFELYEEMKHKGLCPNSTTYSVLIDAISKKENNLVKGEILLKDIQERGFISWNWDGSTQHLHEGLINALRKLKSFKKNRRNNAKIDPTFMEALPEDLLAEVLASQQASSIAQGLAHHGEGQPVDMDNASVIATFPADLCEEKLFCPCCLLHYLLKLIYQGSKQRVIIGPAVSLEEVMKKVEEQTVMDKGVGVTIGRRAASAIADSLK*****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEKSIYTLLTIDRWESLNHMEYKLASLRPVHGRLALKFLNWVMNQPGLELKHLTHILCLTTHVLVKTRMYEDAKLILRQLAQMGIGQNSVFGSLMNTYPLCNSNPSVFDLLIRVYLREGMVEYALETFQLMGFRGFNPSVYTCNMMLSFMLKDRRVDSVWLLFDDMLDRKICPNVATFNILINVSCVEGKLKKAGYLLRKMEESGYVPNIVTYNTLLNWYCKKGRYKAAFKLIDCMASKGIEADVCTYNMFIDDLCRNNRSAKGYLLLKNMRKRMITPNEVTYNTLINGFVKEGKIQVASRVFDEMSMLNFSPNSITYNELIDGHCCKGNFKEAFRLLAMMEEMGLRPNEVSYGALLNGFCKHAKFDLARSLLERMRTNGISISCIAYTSVIDGLCKCGLLDEAMQLFNKMFKDGLNPDLITFSVLINGFCKVGMTRKAKAVLCKMYRDGLVPNKIIYSTLIYYFCKMGKVTEAMKVYAVMNRNAQGSDHFTCNMLVASLCKGGKVCEAEDYVGHMKRIGVVPNSITFDCMIDGYGTLGDGLKAFSMFDEMVKLGHHPSIFTYGSLLKGLCKGGNLKEAKRFLNSLHHIPSAVDTVAYNTILAETCKSGNLWEAIVLLDEMVQFNLLPDRYTYTILLAGLCRKGKVVSALLFFEKVVSKRTFSPNNVMFTCLVDGLFKAGQSKAAMHISKIMDKEGVYPDTIAFNAVMDGFSRMGNMMMANDLLSTMRSRKLCPSLATYNILLHGYSKKKDLLMCSMLLNTMKMEGLLPDKLTCHSLILGFCETGMLEVGFKFLKKMIAEGTMVDCFTFNVLMRKCCEAGEMGKAFDLFNIMNMLGVVPDTNTQDAIIMGLKRIAAFQESHFVLRGMAEKGLTPKCTQYITLINGMCRVGNFQGAFKLKDEMEALGISSSDVAESAMVRGLAHCGKVEEAMLVLNRMLRMRLVPTIATFTTLIHKFCKEAKFVDALKLKGTMELSGVKLDVVSYNVLISGLCANGDVMPAFELYEEMKHKGLCPNSTTYSVLIDAISKKENNLVKGEILLKDIQERGFISWNWDGSTQHLHEGLINALRKLKSFKKNRRNNAKIDPTFMEALPEDLLAEVLASQQASSIAQGLAHHGEGQPVDMDNASVIATFPADLCEEKLFCPCCLLHYLLKLIYQGSKQRVIIGPAVSLEEVMKKVEEQTVMDKGVGVTIGRRAASAIADSLKGRKLK
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	1211	2.2.26 [Sep-21-2011]
Q9LVQ5	1096	Pentatricopeptide repeat-	yes	no	0.890	0.983	0.571	0.0
Q9FJE6	907	Putative pentatricopeptid	no	no	0.662	0.884	0.280	2e-95
Q9FIX3	747	Pentatricopeptide repeat-	no	no	0.500	0.811	0.335	4e-95
Q9LFC5	729	Pentatricopeptide repeat-	no	no	0.507	0.843	0.285	1e-86
Q9FIT7	974	Pentatricopeptide repeat-	no	no	0.661	0.822	0.275	1e-85
Q9SZ52	1112	Pentatricopeptide repeat-	no	no	0.737	0.803	0.253	4e-84
Q0WPZ6	874	Pentatricopeptide repeat-	no	no	0.613	0.850	0.277	6e-84
P0C894	761	Putative pentatricopeptid	no	no	0.490	0.780	0.321	7e-81
Q9LER0	940	Pentatricopeptide repeat-	no	no	0.682	0.878	0.260	8e-77
Q940A6	838	Pentatricopeptide repeat-	no	no	0.502	0.726	0.295	1e-74

>sp|Q9LVQ5|PP432_ARATH Pentatricopeptide repeat-containing protein At5g55840 OS=Arabidopsis thaliana GN=At5g55840 PE=2 SV=2

 Score = 1288 bits (3334), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 617/1080 (57%), Positives = 802/1080 (74%), Gaps = 2/1080 (0%)

Query: 1    MEKSIYTLLTIDRWESLNHMEYKLASLRPVHGRLALKFLNWVMNQPGLELKHLTHILCLT 60
            MEKSIY +LTIDRW SLNHM+Y+ A LR VHG+LALKFL WV+ QPGLE  H+  ++C+T
Sbjct: 19   MEKSIYNILTIDRWGSLNHMDYRQARLRLVHGKLALKFLKWVVKQPGLETDHIVQLVCIT 78

Query: 61   THVLVKTRMYEDAKLILRQLAQMGIGQNSVFGSLMNTYPLCNSNPSVFDLLIRVYLREGM 120
            TH+LV+ RMY+ A+ IL++L+ M    + VFG+LM TY LCNSNPSV+D+LIRVYLREGM
Sbjct: 79   THILVRARMYDPARHILKELSLMSGKSSFVFGALMTTYRLCNSNPSVYDILIRVYLREGM 138

Query: 121  VEYALETFQLMGFRGFNPSVYTCNMMLSFMLKDRRVDSVWLLFDDMLDRKICPNVATFNI 180
            ++ +LE F+LMG  GFNPSVYTCN +L  ++K     SVW    +ML RKICP+VATFNI
Sbjct: 139  IQDSLEIFRLMGLYGFNPSVYTCNAILGSVVKSGEDVSVWSFLKEMLKRKICPDVATFNI 198

Query: 181  LINVSCVEGKLKKAGYLLRKMEESGYVPNIVTYNTLLNWYCKKGRYKAAFKLIDCMASKG 240
            LINV C EG  +K+ YL++KME+SGY P IVTYNT+L+WYCKKGR+KAA +L+D M SKG
Sbjct: 199  LINVLCAEGSFEKSSYLMQKMEKSGYAPTIVTYNTVLHWYCKKGRFKAAIELLDHMKSKG 258

Query: 241  IEADVCTYNMFIDDLCRNNRSAKGYLLLKNMRKRMITPNEVTYNTLINGFVKEGKIQVAS 300
            ++ADVCTYNM I DLCR+NR AKGYLLL++MRKRMI PNEVTYNTLINGF  EGK+ +AS
Sbjct: 259  VDADVCTYNMLIHDLCRSNRIAKGYLLLRDMRKRMIHPNEVTYNTLINGFSNEGKVLIAS 318

Query: 301  RVFDEMSMLNFSPNSITYNELIDGHCCKGNFKEAFRLLAMMEEMGLRPNEVSYGALLNGF 360
            ++ +EM     SPN +T+N LIDGH  +GNFKEA ++  MME  GL P+EVSYG LL+G 
Sbjct: 319  QLLNEMLSFGLSPNHVTFNALIDGHISEGNFKEALKMFYMMEAKGLTPSEVSYGVLLDGL 378

Query: 361  CKHAKFDLARSLLERMRTNGISISCIAYTSVIDGLCKCGLLDEAMQLFNKMFKDGLNPDL 420
            CK+A+FDLAR    RM+ NG+ +  I YT +IDGLCK G LDEA+ L N+M KDG++PD+
Sbjct: 379  CKNAEFDLARGFYMRMKRNGVCVGRITYTGMIDGLCKNGFLDEAVVLLNEMSKDGIDPDI 438

Query: 421  ITFSVLINGFCKVGMTRKAKAVLCKMYRDGLVPNKIIYSTLIYYFCKMGKVTEAMKVYAV 480
            +T+S LINGFCKVG  + AK ++C++YR GL PN IIYSTLIY  C+MG + EA+++Y  
Sbjct: 439  VTYSALINGFCKVGRFKTAKEIVCRIYRVGLSPNGIIYSTLIYNCCRMGCLKEAIRIYEA 498

Query: 481  MNRNAQGSDHFTCNMLVASLCKGGKVCEAEDYVGHMKRIGVVPNSITFDCMIDGYGTLGD 540
            M       DHFT N+LV SLCK GKV EAE+++  M   G++PN+++FDC+I+GYG  G+
Sbjct: 499  MILEGHTRDHFTFNVLVTSLCKAGKVAEAEEFMRCMTSDGILPNTVSFDCLINGYGNSGE 558

Query: 541  GLKAFSMFDEMVKLGHHPSIFTYGSLLKGLCKGGNLKEAKRFLNSLHHIPSAVDTVAYNT 600
            GLKAFS+FDEM K+GHHP+ FTYGSLLKGLCKGG+L+EA++FL SLH +P+AVDTV YNT
Sbjct: 559  GLKAFSVFDEMTKVGHHPTFFTYGSLLKGLCKGGHLREAEKFLKSLHAVPAAVDTVMYNT 618

Query: 601  ILAETCKSGNLWEAIVLLDEMVQFNLLPDRYTYTILLAGLCRKGKVVSALLFFEKVVSKR 660
            +L   CKSGNL +A+ L  EMVQ ++LPD YTYT L++GLCRKGK V A+LF ++  ++ 
Sbjct: 619  LLTAMCKSGNLAKAVSLFGEMVQRSILPDSYTYTSLISGLCRKGKTVIAILFAKEAEARG 678

Query: 661  TFSPNNVMFTCLVDGLFKAGQSKAAMHISKIMDKEGVYPDTIAFNAVMDGFSRMGNMMMA 720
               PN VM+TC VDG+FKAGQ KA ++  + MD  G  PD +  NA++DG+SRMG +   
Sbjct: 679  NVLPNKVMYTCFVDGMFKAGQWKAGIYFREQMDNLGHTPDIVTTNAMIDGYSRMGKIEKT 738

Query: 721  NDLLSTMRSRKLCPSLATYNILLHGYSKKKDLLMCSMLLNTMKMEGLLPDKLTCHSLILG 780
            NDLL  M ++   P+L TYNILLHGYSK+KD+    +L  ++ + G+LPDKLTCHSL+LG
Sbjct: 739  NDLLPEMGNQNGGPNLTTYNILLHGYSKRKDVSTSFLLYRSIILNGILPDKLTCHSLVLG 798

Query: 781  FCETGMLEVGFKFLKKMIAEGTMVDCFTFNVLMRKCCEAGEMGKAFDLFNIMNMLGVVPD 840
             CE+ MLE+G K LK  I  G  VD +TFN+L+ KCC  GE+  AFDL  +M  LG+  D
Sbjct: 799  ICESNMLEIGLKILKAFICRGVEVDRYTFNMLISKCCANGEINWAFDLVKVMTSLGISLD 858

Query: 841  TNTQDAIIMGLKRIAAFQESHFVLRGMAEKGLTPKCTQYITLINGMCRVGNFQGAFKLKD 900
             +T DA++  L R   FQES  VL  M+++G++P+  +YI LING+CRVG+ + AF +K+
Sbjct: 859  KDTCDAMVSVLNRNHRFQESRMVLHEMSKQGISPESRKYIGLINGLCRVGDIKTAFVVKE 918

Query: 901  EMEALGISSSDVAESAMVRGLAHCGKVEEAMLVLNRMLRMRLVPTIATFTTLIHKFCKEA 960
            EM A  I   +VAESAMVR LA CGK +EA L+L  ML+M+LVPTIA+FTTL+H  CK  
Sbjct: 919  EMIAHKICPPNVAESAMVRALAKCGKADEATLLLRFMLKMKLVPTIASFTTLMHLCCKNG 978

Query: 961  KFVDALKLKGTMELSGVKLDVVSYNVLISGLCANGDVMPAFELYEEMKHKGLCPNSTTYS 1020
              ++AL+L+  M   G+KLD+VSYNVLI+GLCA GD+  AFELYEEMK  G   N+TTY 
Sbjct: 979  NVIEALELRVVMSNCGLKLDLVSYNVLITGLCAKGDMALAFELYEEMKGDGFLANATTYK 1038

Query: 1021 VLIDAISKKENNLVKGEILLKDIQERGFISWNWDGSTQHLHEGLINALRKLKSFKKNRRN 1080
             LI  +  +E      +I+LKD+  RGFI+      +Q  H  L  A+ KLK+ + N+++
Sbjct: 1039 ALIRGLLARETAFSGADIILKDLLARGFITSM--SLSQDSHRNLKMAMEKLKALQSNKKD 1096

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FJE6|PP437_ARATH Putative pentatricopeptide repeat-containing protein At5g59900 OS=Arabidopsis thaliana GN=At5g59900 PE=3 SV=1

 Score =  351 bits (900), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 237/846 (28%), Positives = 400/846 (47%), Gaps = 44/846 (5%)

Query: 33  RLALKFLNWVMNQPGLELKHLTHILCLTTHVLVKTRMYEDAKLILRQLAQMGIGQNSVFG 92
           +L L+F N++    G +  H T   C+  H LVK  ++  A  +L+ L    +  + VF 
Sbjct: 85  KLGLRFFNFLGLHRGFD--HSTASFCILIHALVKANLFWPASSLLQTLLLRALKPSDVFN 142

Query: 93  SLMNTYPLCN-SNPSVFDLLIRVYLREGMVEYALETFQLMGFR-GFNPSVYTCNMMLSFM 150
            L + Y  C  S+ S FDLLI+ Y+R   V   +  F++M  +    P V T + +L  +
Sbjct: 143 VLFSCYEKCKLSSSSSFDLLIQHYVRSRRVLDGVLVFKMMITKVSLLPEVRTLSALLHGL 202

Query: 151 LKDRRVDSVWLLFDDMLDRKICPNVATFNILINVSCVEGKLKKAGYLLRKMEESGYVPNI 210
           +K R       LF+DM+                                     G  P++
Sbjct: 203 VKFRHFGLAMELFNDMVS-----------------------------------VGIRPDV 227

Query: 211 VTYNTLLNWYCKKGRYKAAFKLIDCMASKGIEADVCTYNMFIDDLCRNNRSAKGYLLLKN 270
             Y  ++   C+      A ++I  M + G + ++  YN+ ID LC+  +  +   + K+
Sbjct: 228 YIYTGVIRSLCELKDLSRAKEMIAHMEATGCDVNIVPYNVLIDGLCKKQKVWEAVGIKKD 287

Query: 271 MRKRMITPNEVTYNTLINGFVKEGKIQVASRVFDEMSMLNFSPNSITYNELIDGHCCKGN 330
           +  + + P+ VTY TL+ G  K  + ++   + DEM  L FSP+    + L++G   +G 
Sbjct: 288 LAGKDLKPDVVTYCTLVYGLCKVQEFEIGLEMMDEMLCLRFSPSEAAVSSLVEGLRKRGK 347

Query: 331 FKEAFRLLAMMEEMGLRPNEVSYGALLNGFCKHAKFDLARSLLERMRTNGISISCIAYTS 390
            +EA  L+  + + G+ PN   Y AL++  CK  KF  A  L +RM   G+  + + Y+ 
Sbjct: 348 IEEALNLVKRVVDFGVSPNLFVYNALIDSLCKGRKFHEAELLFDRMGKIGLRPNDVTYSI 407

Query: 391 VIDGLCKCGLLDEAMQLFNKMFKDGLNPDLITFSVLINGFCKVGMTRKAKAVLCKMYRDG 450
           +ID  C+ G LD A+    +M   GL   +  ++ LING CK G    A+  + +M    
Sbjct: 408 LIDMFCRRGKLDTALSFLGEMVDTGLKLSVYPYNSLINGHCKFGDISAAEGFMAEMINKK 467

Query: 451 LVPNKIIYSTLIYYFCKMGKVTEAMKVYAVMNRNAQGSDHFTCNMLVASLCKGGKVCEAE 510
           L P  + Y++L+  +C  GK+ +A+++Y  M         +T   L++ L + G + +A 
Sbjct: 468 LEPTVVTYTSLMGGYCSKGKINKALRLYHEMTGKGIAPSIYTFTTLLSGLFRAGLIRDAV 527

Query: 511 DYVGHMKRIGVVPNSITFDCMIDGYGTLGDGLKAFSMFDEMVKLGHHPSIFTYGSLLKGL 570
                M    V PN +T++ MI+GY   GD  KAF    EM + G  P  ++Y  L+ GL
Sbjct: 528 KLFNEMAEWNVKPNRVTYNVMIEGYCEEGDMSKAFEFLKEMTEKGIVPDTYSYRPLIHGL 587

Query: 571 CKGGNLKEAKRFLNSLHHIPSAVDTVAYNTILAETCKSGNLWEAIVLLDEMVQFNLLPDR 630
           C  G   EAK F++ LH     ++ + Y  +L   C+ G L EA+ +  EMVQ  +  D 
Sbjct: 588 CLTGQASEAKVFVDGLHKGNCELNEICYTGLLHGFCREGKLEEALSVCQEMVQRGVDLDL 647

Query: 631 YTYTILLAGLCRKGKVVSALLFFE--KVVSKRTFSPNNVMFTCLVDGLFKAGQSKAAMHI 688
             Y +L+ G  +        LFF   K +  R   P++V++T ++D   K G  K A  I
Sbjct: 648 VCYGVLIDGSLKHK---DRKLFFGLLKEMHDRGLKPDDVIYTSMIDAKSKTGDFKEAFGI 704

Query: 689 SKIMDKEGVYPDTIAFNAVMDGFSRMGNMMMANDLLSTMRSRKLCPSLATYNILLHGYSK 748
             +M  EG  P+ + + AV++G  + G +  A  L S M+     P+  TY   L   +K
Sbjct: 705 WDLMINEGCVPNEVTYTAVINGLCKAGFVNEAEVLCSKMQPVSSVPNQVTYGCFLDILTK 764

Query: 749 KKDLLMCSMLLNTMKMEGLLPDKLTCHSLILGFCETGMLEVGFKFLKKMIAEGTMVDCFT 808
            +  +  ++ L+   ++GLL +  T + LI GFC  G +E   + + +MI +G   DC T
Sbjct: 765 GEVDMQKAVELHNAILKGLLANTATYNMLIRGFCRQGRIEEASELITRMIGDGVSPDCIT 824

Query: 809 FNVLMRKCCEAGEMGKAFDLFNIMNMLGVVPDTNTQDAIIMGLKRIAAFQESHFVLRGMA 868
           +  ++ + C   ++ KA +L+N M   G+ PD    + +I G        ++  +   M 
Sbjct: 825 YTTMINELCRRNDVKKAIELWNSMTEKGIRPDRVAYNTLIHGCCVAGEMGKATELRNEML 884

Query: 869 EKGLTP 874
            +GL P
Sbjct: 885 RQGLIP 890

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FIX3|PP407_ARATH Pentatricopeptide repeat-containing protein At5g39710 OS=Arabidopsis thaliana GN=EMB2745 PE=2 SV=1

 Score =  350 bits (898), Expect = 4e-95,   Method: Compositional matrix adjust.
 Identities = 213/635 (33%), Positives = 327/635 (51%), Gaps = 29/635 (4%)

Query: 34  LALKFLNWVMNQPGLELKHLTHILCLTTHVLVKTRMYEDAKLILRQLAQMGIGQNS---V 90
           L LKFLNW        L+      C+T H+L K ++Y+ A+++   +A   +       V
Sbjct: 64  LILKFLNWANPHQFFTLR----CKCITLHILTKFKLYKTAQILAEDVAAKTLDDEYASLV 119

Query: 91  FGSLMNTYPLCNSNPSVFDLLIRVYLREGMVEYALETFQLMGFRGFNPSVYTCNMMLSFM 150
           F SL  TY LC S  SVFDL+++ Y R  +++ AL    L    GF P V + N +L   
Sbjct: 120 FKSLQETYDLCYSTSSVFDLVVKSYSRLSLIDKALSIVHLAQAHGFMPGVLSYNAVLDAT 179

Query: 151 LKDRR-VDSVWLLFDDMLDRKICPNVATFNILINVSCVEGKLKKAGYLLRKMEESGYVPN 209
           ++ +R +     +F +ML+ ++ PNV T+NILI   C  G +  A  L  KME  G +PN
Sbjct: 180 IRSKRNISFAENVFKEMLESQVSPNVFTYNILIRGFCFAGNIDVALTLFDKMETKGCLPN 239

Query: 210 IVTYNTLLNWYCKKGRYKAAFKLIDCMASKGIEADVCTYNMFIDDLCRNNRSAKGYLLLK 269
           +VTYNTL++ YCK  +    FKL+  MA KG+E ++ +YN+ I+ LCR  R  +   +L 
Sbjct: 240 VVTYNTLIDGYCKLRKIDDGFKLLRSMALKGLEPNLISYNVVINGLCREGRMKEVSFVLT 299

Query: 270 NMRKRMITPNEVTYNTLINGFVKEGKIQVASRVFDEMSMLNFSPNSITYNELIDGHCCKG 329
            M +R  + +EVTYNTLI G+ KEG    A  +  EM     +P+ ITY  LI   C  G
Sbjct: 300 EMNRRGYSLDEVTYNTLIKGYCKEGNFHQALVMHAEMLRHGLTPSVITYTSLIHSMCKAG 359

Query: 330 NFKEAFRLLAMMEEMGLRPNEVSYGALLNGFCKHAKFDLARSLLERMRTNGISISCIAYT 389
           N   A   L  M   GL PNE +Y  L++GF +    + A  +L  M  NG S S + Y 
Sbjct: 360 NMNRAMEFLDQMRVRGLCPNERTYTTLVDGFSQKGYMNEAYRVLREMNDNGFSPSVVTYN 419

Query: 390 SVIDGLCKCGLLDEAMQLFNKMFKDGLNPDLITFSVLINGFCKVGMTRKAKAVLCKMYRD 449
           ++I+G C  G +++A+ +   M + GL+PD++++S +++GFC+     +A  V  +M   
Sbjct: 420 ALINGHCVTGKMEDAIAVLEDMKEKGLSPDVVSYSTVLSGFCRSYDVDEALRVKREMVEK 479

Query: 450 GLVPNKIIYSTLIYYFCKMGKVTEAMKVYAVMNRNAQGSDHFTCNMLVASLCKGGKVCEA 509
           G+ P+ I YS+LI  FC+  +  EA  +Y  M R     D FT   L+ + C  G + +A
Sbjct: 480 GIKPDTITYSSLIQGFCEQRRTKEACDLYEEMLRVGLPPDEFTYTALINAYCMEGDLEKA 539

Query: 510 EDYVGHMKRIGVVPNSITFDCMIDGYGTLGDGLKAFSMFDEMVKLGHHPSIFTYG----- 564
                 M   GV+P+ +T+  +I+G        +A  +  ++      PS  TY      
Sbjct: 540 LQLHNEMVEKGVLPDVVTYSVLINGLNKQSRTREAKRLLLKLFYEESVPSDVTYHTLIEN 599

Query: 565 ----------SLLKGLCKGGNLKEAKRFLNSL---HHIPSAVDTVAYNTILAETCKSGNL 611
                     SL+KG C  G + EA +   S+   +H P   D  AYN ++   C++G++
Sbjct: 600 CSNIEFKSVVSLIKGFCMKGMMTEADQVFESMLGKNHKP---DGTAYNIMIHGHCRAGDI 656

Query: 612 WEAIVLLDEMVQFNLLPDRYTYTILLAGLCRKGKV 646
            +A  L  EMV+   L    T   L+  L ++GKV
Sbjct: 657 RKAYTLYKEMVKSGFLLHTVTVIALVKALHKEGKV 691

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LFC5|PP360_ARATH Pentatricopeptide repeat-containing protein At5g01110 OS=Arabidopsis thaliana GN=At5g01110 PE=2 SV=1

 Score =  322 bits (824), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 187/654 (28%), Positives = 332/654 (50%), Gaps = 39/654 (5%)

Query: 50  LKHLTHILCLTTHVLVKTRMYEDAK-LILRQLAQMGIGQNSVFGSLMNTYPLCNSNPSVF 108
            KH +  L    H+LV++    DA+  +LR + + G+ +  +  SL +T+  C SN SVF
Sbjct: 109 FKHTSLSLSAMIHILVRSGRLSDAQSCLLRMIRRSGVSRLEIVNSLDSTFSNCGSNDSVF 168

Query: 109 DLLIRVYLREGMVEYALETFQLMGFRGFNPSVYTCNMMLSFMLKDRRVDSVWLLFDDMLD 168
           DLLIR Y++   +  A E F L+  +GF  S+  CN ++  +++   V+  W ++ ++  
Sbjct: 169 DLLIRTYVQARKLREAHEAFTLLRSKGFTVSIDACNALIGSLVRIGWVELAWGVYQEISR 228

Query: 169 RKICPNVATFNILINVSCVEGKLKKAGYLLRKMEESGYVPNIVTYNTLLNWYCKKGRYKA 228
             +  NV T NI++N  C +GK++K G  L +++E G  P+IVTYNTL++ Y  KG  + 
Sbjct: 229 SGVGINVYTLNIMVNALCKDGKMEKVGTFLSQVQEKGVYPDIVTYNTLISAYSSKGLMEE 288

Query: 229 AFKLIDCMASKGIEADVCTYNMFIDDLCRNNRSAKGYLLLKNMRKRMITPNEVTYNTLIN 288
           AF+L++ M  KG    V TYN  I+ LC++ +  +   +   M +  ++P+  TY +L+ 
Sbjct: 289 AFELMNAMPGKGFSPGVYTYNTVINGLCKHGKYERAKEVFAEMLRSGLSPDSTTYRSLLM 348

Query: 289 GFVKEGKIQVASRVFDEMSMLNFSPNSITYNELIDGHCCKGNFKEAFRLLAMMEEMGLRP 348
              K+G +    +VF +M   +  P+ + ++ ++      GN  +A      ++E GL P
Sbjct: 349 EACKKGDVVETEKVFSDMRSRDVVPDLVCFSSMMSLFTRSGNLDKALMYFNSVKEAGLIP 408

Query: 349 NEVSYGALLNGFCKHAKFDLARSLLERMRTNGISISCIAYTSVIDGLCKCGLLDEAMQLF 408
           + V Y  L+ G+C+     +A +L   M   G ++  + Y +++ GLCK  +L EA +LF
Sbjct: 409 DNVIYTILIQGYCRKGMISVAMNLRNEMLQQGCAMDVVTYNTILHGLCKRKMLGEADKLF 468

Query: 409 NKMFKDGLNPDLITFSVLINGFCKVGMTRKAKAVLCKMYRDGLVPNKIIYSTLIYYFCKM 468
           N+M +  L PD  T ++LI+G CK+G  + A  +  KM    +  + + Y+TL+  F K+
Sbjct: 469 NEMTERALFPDSYTLTILIDGHCKLGNLQNAMELFQKMKEKRIRLDVVTYNTLLDGFGKV 528

Query: 469 GKVTEAMKVYAVMNRNAQGSDHFTCNMLVASLCKGGKVCEAEDYVGHMKRIGVVPNSITF 528
           G +  A +++A M          + ++LV +LC  G + EA                   
Sbjct: 529 GDIDTAKEIWADMVSKEILPTPISYSILVNALCSKGHLAEA------------------- 569

Query: 529 DCMIDGYGTLGDGLKAFSMFDEMVKLGHHPSIFTYGSLLKGLCKGGNLKEAKRFLNSLHH 588
                           F ++DEM+     P++    S++KG C+ GN  + + FL  +  
Sbjct: 570 ----------------FRVWDEMISKNIKPTVMICNSMIKGYCRSGNASDGESFLEKMIS 613

Query: 589 IPSAVDTVAYNTILAETCKSGNLWEAIVLLDEM--VQFNLLPDRYTYTILLAGLCRKGKV 646
                D ++YNT++    +  N+ +A  L+ +M   Q  L+PD +TY  +L G CR+ ++
Sbjct: 614 EGFVPDCISYNTLIYGFVREENMSKAFGLVKKMEEEQGGLVPDVFTYNSILHGFCRQNQM 673

Query: 647 VSALLFFEKVVSKRTFSPNNVMFTCLVDGLFKAGQSKAAMHISKIMDKEGVYPD 700
             A +   K++ +R  +P+   +TC+++G         A  I   M + G  PD
Sbjct: 674 KEAEVVLRKMI-ERGVNPDRSTYTCMINGFVSQDNLTEAFRIHDEMLQRGFSPD 726

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FIT7|PP442_ARATH Pentatricopeptide repeat-containing protein At5g61990, mitochondrial OS=Arabidopsis thaliana GN=At5g61990 PE=2 SV=1

 Score =  318 bits (816), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 242/879 (27%), Positives = 403/879 (45%), Gaps = 78/879 (8%)

Query: 36  LKFLNWVMNQPGLELKHLTHILCLTTHVLVKTRMYEDAKLILRQLAQMGIGQNSVFGSLM 95
           L F NWV +Q   E K L     L    L     +E A  ++ ++ +       V+ S++
Sbjct: 81  LSFFNWVDSQKVTEQK-LDSFSFLALD-LCNFGSFEKALSVVERMIERNWPVAEVWSSIV 138

Query: 96  ---NTYPLCNSNPSVFDLLIRVYLREGMVEYALETFQL-MGFRGFNPSVYTCNMMLSFML 151
                +   + +  +F +L   Y+ +G +E A+  F   MG     P +  C ++L  +L
Sbjct: 139 RCSQEFVGKSDDGVLFGILFDGYIAKGYIEEAVFVFSSSMGLE-LVPRLSRCKVLLDALL 197

Query: 152 KDRRVDSVWLLFDDMLDRKICPNVATFNILINVSCVEGKLKKAGYLLRKMEES------- 204
           +  R+D  W ++  M++R +  +V T+++LI   C  G ++    +L K E+        
Sbjct: 198 RWNRLDLFWDVYKGMVERNVVFDVKTYHMLIIAHCRAGNVQLGKDVLFKTEKEFRTATLN 257

Query: 205 --------------GYVPNIVTYNTLLNWYCKKGRYKAAFKLIDCMASKGIEADVCTYNM 250
                         G VP   TY+ L++  CK  R + A  L+  M S G+  D  TY++
Sbjct: 258 VDGALKLKESMICKGLVPLKYTYDVLIDGLCKIKRLEDAKSLLVEMDSLGVSLDNHTYSL 317

Query: 251 FIDDLC--RNNRSAKGYL---------------------------------LLKNMRKRM 275
            ID L   RN  +AKG +                                 L   M    
Sbjct: 318 LIDGLLKGRNADAAKGLVHEMVSHGINIKPYMYDCCICVMSKEGVMEKAKALFDGMIASG 377

Query: 276 ITPNEVTYNTLINGFVKEGKIQVASRVFDEMSMLNFSPNSITYNELIDGHCCKGNFKEAF 335
           + P    Y +LI G+ +E  ++    +  EM   N   +  TY  ++ G C  G+   A+
Sbjct: 378 LIPQAQAYASLIEGYCREKNVRQGYELLVEMKKRNIVISPYTYGTVVKGMCSSGDLDGAY 437

Query: 336 RLLAMMEEMGLRPNEVSYGALLNGFCKHAKFDLARSLLERMRTNGISISCIAYTSVIDGL 395
            ++  M   G RPN V Y  L+  F ++++F  A  +L+ M+  GI+     Y S+I GL
Sbjct: 438 NIVKEMIASGCRPNVVIYTTLIKTFLQNSRFGDAMRVLKEMKEQGIAPDIFCYNSLIIGL 497

Query: 396 CKCGLLDEAMQLFNKMFKDGLNPDLITFSVLINGFCKVGMTRKAKAVLCKMYRDGLVPNK 455
            K   +DEA     +M ++GL P+  T+   I+G+ +      A   + +M   G++PNK
Sbjct: 498 SKAKRMDEARSFLVEMVENGLKPNAFTYGAFISGYIEASEFASADKYVKEMRECGVLPNK 557

Query: 456 IIYSTLIYYFCKMGKVTEAMKVYAVMNRNAQGSDHFTCNMLVASLCKGGKVCEAEDYVGH 515
           ++ + LI  +CK GKV EA   Y  M       D  T  +L+  L K  KV +AE+    
Sbjct: 558 VLCTGLINEYCKKGKVIEACSAYRSMVDQGILGDAKTYTVLMNGLFKNDKVDDAEEIFRE 617

Query: 516 MKRIGVVPNSITFDCMIDGYGTLGDGLKAFSMFDEMVKLGHHPSIFTYGSLLKGLCKGGN 575
           M+  G+ P+  ++  +I+G+  LG+  KA S+FDEMV+ G  P++  Y  LL G C+ G 
Sbjct: 618 MRGKGIAPDVFSYGVLINGFSKLGNMQKASSIFDEMVEEGLTPNVIIYNMLLGGFCRSGE 677

Query: 576 LKEAKRFLNSLHHIPSAVDTVAYNTILAETCKSGNLWEAIVLLDEMVQFNLLPDRYTYTI 635
           +++AK  L+ +       + V Y TI+   CKSG+L EA  L DEM    L+PD + YT 
Sbjct: 678 IEKAKELLDEMSVKGLHPNAVTYCTIIDGYCKSGDLAEAFRLFDEMKLKGLVPDSFVYTT 737

Query: 636 LLAGLCRKGKVVSALLFFEKVVSKRTFSPNNVMFTCLVDGLFKAGQSKAAMHI-SKIMDK 694
           L+ G CR   V  A+  F    +K+  + +   F  L++ +FK G+++    + +++MD 
Sbjct: 738 LVDGCCRLNDVERAITIFG--TNKKGCASSTAPFNALINWVFKFGKTELKTEVLNRLMD- 794

Query: 695 EGVY-----PDTIAFNAVMDGFSRMGNMMMANDLLSTMRSRKLCPSLATYNILLHGYSKK 749
            G +     P+ + +N ++D   + GN+  A +L   M++  L P++ TY  LL+GY K 
Sbjct: 795 -GSFDRFGKPNDVTYNIMIDYLCKEGNLEAAKELFHQMQNANLMPTVITYTSLLNGYDKM 853

Query: 750 KDLLMCSMLLNTMKMEGLLPDKLTCHSLILGFCETGMLE-----VGFKFLKKMIAEGTMV 804
                   + +     G+ PD +    +I  F + GM       V   F K  + +G  +
Sbjct: 854 GRRAEMFPVFDEAIAAGIEPDHIMYSVIINAFLKEGMTTKALVLVDQMFAKNAVDDGCKL 913

Query: 805 DCFTFNVLMRKCCEAGEMGKAFDLFNIMNMLGVVPDTNT 843
              T   L+    + GEM  A  +   M  L  +PD+ T
Sbjct: 914 SISTCRALLSGFAKVGEMEVAEKVMENMVRLQYIPDSAT 952

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SZ52|PP344_ARATH Pentatricopeptide repeat-containing protein At4g31850, chloroplastic OS=Arabidopsis thaliana GN=PGR3 PE=1 SV=1

 Score =  314 bits (804), Expect = 4e-84,   Method: Compositional matrix adjust.
 Identities = 239/941 (25%), Positives = 416/941 (44%), Gaps = 48/941 (5%)

Query: 91   FGSLMNTYPLCNSNPSVFDLLIRVYLREGMVEYALETFQLMGFRGFNPSVYTCNMMLSFM 150
            FG ++N Y         ++ LI + L+      A+E ++ M   GF PS+ T + ++  +
Sbjct: 182  FGFVLNAYS--------YNGLIHLLLKSRFCTEAMEVYRRMILEGFRPSLQTYSSLMVGL 233

Query: 151  LKDRRVDSVWLLFDDMLDRKICPNVATFNILINVSCVEGKLKKAGYLLRKMEESGYVPNI 210
             K R +DSV                                     LL++ME  G  PN+
Sbjct: 234  GKRRDIDSVM-----------------------------------GLLKEMETLGLKPNV 258

Query: 211  VTYNTLLNWYCKKGRYKAAFKLIDCMASKGIEADVCTYNMFIDDLCRNNRSAKGYLLLKN 270
             T+   +    + G+   A++++  M  +G   DV TY + ID LC   +      + + 
Sbjct: 259  YTFTICIRVLGRAGKINEAYEILKRMDDEGCGPDVVTYTVLIDALCTARKLDCAKEVFEK 318

Query: 271  MRKRMITPNEVTYNTLINGFVKEGKIQVASRVFDEMSMLNFSPNSITYNELIDGHCCKGN 330
            M+     P+ VTY TL++ F     +    + + EM      P+ +T+  L+D  C  GN
Sbjct: 319  MKTGRHKPDRVTYITLLDRFSDNRDLDSVKQFWSEMEKDGHVPDVVTFTILVDALCKAGN 378

Query: 331  FKEAFRLLAMMEEMGLRPNEVSYGALLNGFCKHAKFDLARSLLERMRTNGISISCIAYTS 390
            F EAF  L +M + G+ PN  +Y  L+ G  +  + D A  L   M + G+  +   Y  
Sbjct: 379  FGEAFDTLDVMRDQGILPNLHTYNTLICGLLRVHRLDDALELFGNMESLGVKPTAYTYIV 438

Query: 391  VIDGLCKCGLLDEAMQLFNKMFKDGLNPDLITFSVLINGFCKVGMTRKAKAVLCKMYRDG 450
             ID   K G    A++ F KM   G+ P+++  +  +    K G  R+AK +   +   G
Sbjct: 439  FIDYYGKSGDSVSALETFEKMKTKGIAPNIVACNASLYSLAKAGRDREAKQIFYGLKDIG 498

Query: 451  LVPNKIIYSTLIYYFCKMGKVTEAMKVYAVMNRNAQGSDHFTCNMLVASLCKGGKVCEAE 510
            LVP+ + Y+ ++  + K+G++ EA+K+ + M  N    D    N L+ +L K  +V EA 
Sbjct: 499  LVPDSVTYNMMMKCYSKVGEIDEAIKLLSEMMENGCEPDVIVVNSLINTLYKADRVDEAW 558

Query: 511  DYVGHMKRIGVVPNSITFDCMIDGYGTLGDGLKAFSMFDEMVKLGHHPSIFTYGSLLKGL 570
                 MK + + P  +T++ ++ G G  G   +A  +F+ MV+ G  P+  T+ +L   L
Sbjct: 559  KMFMRMKEMKLKPTVVTYNTLLAGLGKNGKIQEAIELFEGMVQKGCPPNTITFNTLFDCL 618

Query: 571  CKGGNLKEAKRFLNSLHHIPSAVDTVAYNTILAETCKSGNLWEAIVLLDEMVQFNLLPDR 630
            CK   +  A + L  +  +    D   YNTI+    K+G + EA+    +M +  + PD 
Sbjct: 619  CKNDEVTLALKMLFKMMDMGCVPDVFTYNTIIFGLVKNGQVKEAMCFFHQMKKL-VYPDF 677

Query: 631  YTYTILLAGLCRKGKVVSALLFFEKVVSKRTFSPNNVMFTCLVDGLFKAGQSKAAMHISK 690
             T   LL G+ +   +  A       +      P N+ +  L+  +        A+  S+
Sbjct: 678  VTLCTLLPGVVKASLIEDAYKIITNFLYNCADQPANLFWEDLIGSILAEAGIDNAVSFSE 737

Query: 691  IMDKEGVYPDTIAFNAVMDGFS-RMGNMMMANDLLSTM-RSRKLCPSLATYNILLHGYSK 748
             +   G+  D  +    +  +S +  N+  A  L     +   + P L TYN+L+ G  +
Sbjct: 738  RLVANGICRDGDSILVPIIRYSCKHNNVSGARTLFEKFTKDLGVQPKLPTYNLLIGGLLE 797

Query: 749  KKDLLMCSMLLNTMKMEGLLPDKLTCHSLILGFCETGMLEVGFKFLKKMIAEGTMVDCFT 808
               + +   +   +K  G +PD  T + L+  + ++G ++  F+  K+M       +  T
Sbjct: 798  ADMIEIAQDVFLQVKSTGCIPDVATYNFLLDAYGKSGKIDELFELYKEMSTHECEANTIT 857

Query: 809  FNVLMRKCCEAGEMGKAFDL-FNIMNMLGVVPDTNTQDAIIMGLKRIAAFQESHFVLRGM 867
             N+++    +AG +  A DL +++M+     P   T   +I GL +     E+  +  GM
Sbjct: 858  HNIVISGLVKAGNVDDALDLYYDLMSDRDFSPTACTYGPLIDGLSKSGRLYEAKQLFEGM 917

Query: 868  AEKGLTPKCTQYITLINGMCRVGNFQGAFKLKDEMEALGISSSDVAESAMVRGLAHCGKV 927
             + G  P C  Y  LING  + G    A  L   M   G+       S +V  L   G+V
Sbjct: 918  LDYGCRPNCAIYNILINGFGKAGEADAACALFKRMVKEGVRPDLKTYSVLVDCLCMVGRV 977

Query: 928  EEAMLVLNRMLRMRLVPTIATFTTLIHKFCKEAKFVDALKLKGTMELS-GVKLDVVSYNV 986
            +E +     +    L P +  +  +I+   K  +  +AL L   M+ S G+  D+ +YN 
Sbjct: 978  DEGLHYFKELKESGLNPDVVCYNLIINGLGKSHRLEEALVLFNEMKTSRGITPDLYTYNS 1037

Query: 987  LISGLCANGDVMPAFELYEEMKHKGLCPNSTTYSVLIDAIS 1027
            LI  L   G V  A ++Y E++  GL PN  T++ LI   S
Sbjct: 1038 LILNLGIAGMVEEAGKIYNEIQRAGLEPNVFTFNALIRGYS 1078

Plays a role in the stabilization of the primary polycistronic transcript of the petL operon encoding subunits of the cytochrome b6-f complex.

Arabidopsis thaliana (taxid: 3702)

>sp|Q0WPZ6|PP158_ARATH Pentatricopeptide repeat-containing protein At2g17140 OS=Arabidopsis thaliana GN=At2g17140 PE=2 SV=1

 Score =  313 bits (802), Expect = 6e-84,   Method: Compositional matrix adjust.
 Identities = 217/781 (27%), Positives = 370/781 (47%), Gaps = 38/781 (4%)

Query: 33  RLALKFLNWVMNQPGLELKHLTHILCLT-THVLVKTRMYEDAKLILRQLAQMGIGQNSVF 91
           RLA +    + + P  E   ++     T   +LV+ +M+E+ + +   +    I Q +  
Sbjct: 17  RLAWRIFKRIFSSPSEESHGISLDATPTIARILVRAKMHEEIQELHNLILSSSI-QKTKL 75

Query: 92  GSLMNTYPLCNSNPSVFDLLIRVYLREGMVEYALETFQLMG--FRGFNPSVYTCNMMLSF 149
            SL++              ++ ++ +   ++ A   FQL+   F    PSVY  N++L  
Sbjct: 76  SSLLS--------------VVSIFAKSNHIDKAFPQFQLVRSRFPENKPSVYLYNLLLES 121

Query: 150 MLKDRRVDSVWLLFDDMLDRKICPNVATFNILINVSCVEGKLKKAGYLLRKMEESGYVPN 209
            +K+RRV+ V  L+ DM+   I P   TFN+LI   C    +  A  L  +M E G  PN
Sbjct: 122 CIKERRVEFVSWLYKDMVLCGIAPQTYTFNLLIRALCDSSCVDAARELFDEMPEKGCKPN 181

Query: 210 IVTYNTLLNWYCKKGRYKAAFKLIDCMASKGIEADVCTYNMFIDDLCRNNRSAKGYLLLK 269
             T+  L+  YCK G      +L++ M S G+  +   YN  +   CR  R+     +++
Sbjct: 182 EFTFGILVRGYCKAGLTDKGLELLNAMESFGVLPNKVIYNTIVSSFCREGRNDDSEKMVE 241

Query: 270 NMRKRMITPNEVTYNTLINGFVKEGKIQVASRVFDEMSMLNF----SPNSITYNELIDGH 325
            MR+  + P+ VT+N+ I+   KEGK+  ASR+F +M +  +     PNSITYN ++ G 
Sbjct: 242 KMREEGLVPDIVTFNSRISALCKEGKVLDASRIFSDMELDEYLGLPRPNSITYNLMLKGF 301

Query: 326 CCKGNFKEAFRLLAMMEEMGLRPNEVSYGALLNGFCKHAKFDLARSLLERMRTNGISISC 385
           C  G  ++A  L   + E     +  SY   L G  +H KF  A ++L++M   GI  S 
Sbjct: 302 CKVGLLEDAKTLFESIRENDDLASLQSYNIWLQGLVRHGKFIEAETVLKQMTDKGIGPSI 361

Query: 386 IAYTSVIDGLCKCGLLDEAMQLFNKMFKDGLNPDLITFSVLINGFCKVGMTRKAKAVLCK 445
            +Y  ++DGLCK G+L +A  +   M ++G+ PD +T+  L++G+C VG    AK++L +
Sbjct: 362 YSYNILMDGLCKLGMLSDAKTIVGLMKRNGVCPDAVTYGCLLHGYCSVGKVDAAKSLLQE 421

Query: 446 MYRDGLVPNKIIYSTLIYYFCKMGKVTEAMKVYAVMNRNAQGSDHFTCNMLVASLCKGGK 505
           M R+  +PN    + L++   KMG+++EA ++   MN    G D  TCN++V  LC  G+
Sbjct: 422 MMRNNCLPNAYTCNILLHSLWKMGRISEAEELLRKMNEKGYGLDTVTCNIIVDGLCGSGE 481

Query: 506 VCEAEDYVGHMKRIGVVPNSITFDCMIDGYGTLGDGLKAFSMFDEMVKLGHHPSIFTYGS 565
           + +A + V  M+  G               G LG+      + D +++    P + TY +
Sbjct: 482 LDKAIEIVKGMRVHGSA-----------ALGNLGNSYIGL-VDDSLIENNCLPDLITYST 529

Query: 566 LLKGLCKGGNLKEAKRFLNSLHHIPSAVDTVAYNTILAETCKSGNLWEAIVLLDEMVQFN 625
           LL GLCK G   EAK     +       D+VAYN  +   CK G +  A  +L +M +  
Sbjct: 530 LLNGLCKAGRFAEAKNLFAEMMGEKLQPDSVAYNIFIHHFCKQGKISSAFRVLKDMEKKG 589

Query: 626 LLPDRYTYTILLAGLCRKGKVVSALLFFEKVVSKRTFSPNNVMFTCLVDGLFKAGQSKAA 685
                 TY  L+ GL  K ++       ++ + ++  SPN   +   +  L +  + + A
Sbjct: 590 CHKSLETYNSLILGLGIKNQIFEIHGLMDE-MKEKGISPNICTYNTAIQYLCEGEKVEDA 648

Query: 686 MHISKIMDKEGVYPDTIAFNAVMDGFSRMGNMMMANDLLSTMRSRKLC-PSLATYNILLH 744
            ++   M ++ + P+  +F  +++ F ++ +  MA ++  T  S  +C      Y+++ +
Sbjct: 649 TNLLDEMMQKNIAPNVFSFKYLIEAFCKVPDFDMAQEVFETAVS--ICGQKEGLYSLMFN 706

Query: 745 GYSKKKDLLMCSMLLNTMKMEGLLPDKLTCHSLILGFCETGMLEVGFKFLKKMIAEGTMV 804
                  LL  + LL  +   G          L+   C+   LEV    L KMI  G   
Sbjct: 707 ELLAAGQLLKATELLEAVLDRGFELGTFLYKDLVESLCKKDELEVASGILHKMIDRGYGF 766

Query: 805 D 805
           D
Sbjct: 767 D 767

Arabidopsis thaliana (taxid: 3702)

>sp|P0C894|PP143_ARATH Putative pentatricopeptide repeat-containing protein At2g02150 OS=Arabidopsis thaliana GN=At2g02150 PE=3 SV=1

 Score =  303 bits (775), Expect = 7e-81,   Method: Compositional matrix adjust.
 Identities = 193/600 (32%), Positives = 298/600 (49%), Gaps = 6/600 (1%)

Query: 33  RLALKFLNWVMNQPGLELKHLTHILCLTTHVLVKTRMYEDAKLILRQLAQMGIGQNSVFG 92
           +LA KF  W M + G   KH     C+  H+L   RMY DA  +L+++  +      VF 
Sbjct: 123 KLAFKFFKWSMTRNGF--KHSVESYCIVAHILFCARMYYDANSVLKEMV-LSKADCDVFD 179

Query: 93  SLMNTYPLCNSNPSVFDLLIRVYLREGMVEYALETFQLMG-FRGFNPSVYTCNMMLSFML 151
            L +T  +C     VFD L  V +  GM+E A++ F  M  FR F P   +CN +L    
Sbjct: 180 VLWSTRNVCVPGFGVFDALFSVLIDLGMLEEAIQCFSKMKRFRVF-PKTRSCNGLLHRFA 238

Query: 152 KDRRVDSVWLLFDDMLDRKICPNVATFNILINVSCVEGKLKKAGYLLRKMEESGYVPNIV 211
           K  + D V   F DM+     P V T+NI+I+  C EG ++ A  L  +M+  G VP+ V
Sbjct: 239 KLGKTDDVKRFFKDMIGAGARPTVFTYNIMIDCMCKEGDVEAARGLFEEMKFRGLVPDTV 298

Query: 212 TYNTLLNWYCKKGRYKAAFKLIDCMASKGIEADVCTYNMFIDDLCRNNRSAKGYLLLKNM 271
           TYN++++ + K GR        + M     E DV TYN  I+  C+  +   G    + M
Sbjct: 299 TYNSMIDGFGKVGRLDDTVCFFEEMKDMCCEPDVITYNALINCFCKFGKLPIGLEFYREM 358

Query: 272 RKRMITPNEVTYNTLINGFVKEGKIQVASRVFDEMSMLNFSPNSITYNELIDGHCCKGNF 331
           +   + PN V+Y+TL++ F KEG +Q A + + +M  +   PN  TY  LID +C  GN 
Sbjct: 359 KGNGLKPNVVSYSTLVDAFCKEGMMQQAIKFYVDMRRVGLVPNEYTYTSLIDANCKIGNL 418

Query: 332 KEAFRLLAMMEEMGLRPNEVSYGALLNGFCKHAKFDLARSLLERMRTNGISISCIAYTSV 391
            +AFRL   M ++G+  N V+Y AL++G C   +   A  L  +M T G+  +  +Y ++
Sbjct: 419 SDAFRLGNEMLQVGVEWNVVTYTALIDGLCDAERMKEAEELFGKMDTAGVIPNLASYNAL 478

Query: 392 IDGLCKCGLLDEAMQLFNKMFKDGLNPDLITFSVLINGFCKVGMTRKAKAVLCKMYRDGL 451
           I G  K   +D A++L N++   G+ PDL+ +   I G C +     AK V+ +M   G+
Sbjct: 479 IHGFVKAKNMDRALELLNELKGRGIKPDLLLYGTFIWGLCSLEKIEAAKVVMNEMKECGI 538

Query: 452 VPNKIIYSTLIYYFCKMGKVTEAMKVYAVMNRNAQGSDHFTCNMLVASLCKGGKVCEAED 511
             N +IY+TL+  + K G  TE + +   M          T  +L+  LCK   V +A D
Sbjct: 539 KANSLIYTTLMDAYFKSGNPTEGLHLLDEMKELDIEVTVVTFCVLIDGLCKNKLVSKAVD 598

Query: 512 YVGHMKR-IGVVPNSITFDCMIDGYGTLGDGLKAFSMFDEMVKLGHHPSIFTYGSLLKGL 570
           Y   +    G+  N+  F  MIDG         A ++F++MV+ G  P    Y SL+ G 
Sbjct: 599 YFNRISNDFGLQANAAIFTAMIDGLCKDNQVEAATTLFEQMVQKGLVPDRTAYTSLMDGN 658

Query: 571 CKGGNLKEAKRFLNSLHHIPSAVDTVAYNTILAETCKSGNLWEAIVLLDEMVQFNLLPDR 630
            K GN+ EA    + +  I   +D +AY +++        L +A   L+EM+   + PD 
Sbjct: 659 FKQGNVLEALALRDKMAEIGMKLDLLAYTSLVWGLSHCNQLQKARSFLEEMIGEGIHPDE 718

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LER0|PP381_ARATH Pentatricopeptide repeat-containing protein At5g14770, mitochondrial OS=Arabidopsis thaliana GN=At5g14770 PE=2 SV=2

 Score =  289 bits (740), Expect = 8e-77,   Method: Compositional matrix adjust.
 Identities = 228/874 (26%), Positives = 387/874 (44%), Gaps = 48/874 (5%)

Query: 106 SVFDLLIRVYLREGMVEYALETFQLMGFRGFNPSVYTCNMML-SFMLKDRRVDSVWLLFD 164
           S+F  L R+YL    +  A  T   M   G  P     N ++  F +     D V L++ 
Sbjct: 61  SLFHTLFRLYLSCERLYGAARTLSAMCTFGVVPDSRLWNSLIHQFNVNGLVHDQVSLIYS 120

Query: 165 DMLDRKICPNVATFNILINVSCVEGKLKKAGYLLRKMEESGYVPNIVTYNTLLNWYCKKG 224
            M+   + P+V   N+LI+  C  G+L  A  LLR    S    + VTYNT+++  C+ G
Sbjct: 121 KMIACGVSPDVFALNVLIHSFCKVGRLSFAISLLRNRVIS---IDTVTYNTVISGLCEHG 177

Query: 225 RYKAAFKLIDCMASKGIEADVCTYNMFIDDLCRNNRSAKGYLLLKNMRKRMITPNEVTYN 284
               A++ +  M   GI  D  +YN  ID  C+     +   L+  + +     N +T+ 
Sbjct: 178 LADEAYQFLSEMVKMGILPDTVSYNTLIDGFCKVGNFVRAKALVDEISEL----NLITHT 233

Query: 285 TLINGFVKEGKIQVASRVFDEMSMLNFSPNSITYNELIDGHCCKGNFKEAFRLLAMMEEM 344
            L++ +     I+ A R   +M M  F P+ +T++ +I+  C  G   E   LL  MEEM
Sbjct: 234 ILLSSYYNLHAIEEAYR---DMVMSGFDPDVVTFSSIINRLCKGGKVLEGGLLLREMEEM 290

Query: 345 GLRPNEVSYGALLNGFCKHAKFDLARSLLERMRTNGISISCIAYTSVIDGLCKCGLLDEA 404
            + PN V+Y  L++   K   +  A +L  +M   GI +  + YT ++DGL K G L EA
Sbjct: 291 SVYPNHVTYTTLVDSLFKANIYRHALALYSQMVVRGIPVDLVVYTVLMDGLFKAGDLREA 350

Query: 405 MQLFNKMFKDGLNPDLITFSVLINGFCKVGMTRKAKAVLCKMYRDGLVPNKIIYSTLIYY 464
            + F  + +D   P+++T++ L++G CK G    A+ ++ +M    ++PN + YS++I  
Sbjct: 351 EKTFKMLLEDNQVPNVVTYTALVDGLCKAGDLSSAEFIITQMLEKSVIPNVVTYSSMING 410

Query: 465 FCKMGKVTEAMKVYAVMNRNAQGSDHFTCNMLVASLCKGGKVCEAEDYVGHMKRIGVVPN 524
           + K G + EA+ +   M       + FT   ++  L K GK   A +    M+ IGV  N
Sbjct: 411 YVKKGMLEEAVSLLRKMEDQNVVPNGFTYGTVIDGLFKAGKEEMAIELSKEMRLIGVEEN 470

Query: 525 SITFDCMIDGYGTLGDGLKAFSMFDEMVKLGHHPSIFTYGSLLKGLCKGGNLKEAKRFLN 584
           +   D +++    +G   +   +  +MV  G       Y SL+    KGG+ + A  +  
Sbjct: 471 NYILDALVNHLKRIGRIKEVKGLVKDMVSKGVTLDQINYTSLIDVFFKGGDEEAALAWAE 530

Query: 585 SLHHIPSAVDTVAYNTILAETCKSGNLWEAIVLLDEMVQFNLLPDRYTYTILLAGLCRKG 644
            +       D V+YN                                   +L++G+ + G
Sbjct: 531 EMQERGMPWDVVSYN-----------------------------------VLISGMLKFG 555

Query: 645 KVVSALLFFEKVVSKRTFSPNNVMFTCLVDGLFKAGQSKAAMHISKIMDKEGVYPDTIAF 704
           KV +   +  K + ++   P+   F  +++   K G S+  + +   M   G+ P  ++ 
Sbjct: 556 KVGADWAY--KGMREKGIEPDIATFNIMMNSQRKQGDSEGILKLWDKMKSCGIKPSLMSC 613

Query: 705 NAVMDGFSRMGNMMMANDLLSTMRSRKLCPSLATYNILLHGYSKKKDLLMCSMLLNTMKM 764
           N V+      G M  A  +L+ M   ++ P+L TY I L   SK K          T+  
Sbjct: 614 NIVVGMLCENGKMEEAIHILNQMMLMEIHPNLTTYRIFLDTSSKHKRADAIFKTHETLLS 673

Query: 765 EGLLPDKLTCHSLILGFCETGMLEVGFKFLKKMIAEGTMVDCFTFNVLMRKCCEAGEMGK 824
            G+   +   ++LI   C+ GM +     +  M A G + D  TFN LM        + K
Sbjct: 674 YGIKLSRQVYNTLIATLCKLGMTKKAAMVMGDMEARGFIPDTVTFNSLMHGYFVGSHVRK 733

Query: 825 AFDLFNIMNMLGVVPDTNTQDAIIMGLKRIAAFQESHFVLRGMAEKGLTPKCTQYITLIN 884
           A   +++M   G+ P+  T + II GL      +E    L  M  +G+ P    Y  LI+
Sbjct: 734 ALSTYSVMMEAGISPNVATYNTIIRGLSDAGLIKEVDKWLSEMKSRGMRPDDFTYNALIS 793

Query: 885 GMCRVGNFQGAFKLKDEMEALGISSSDVAESAMVRGLAHCGKVEEAMLVLNRMLRMRLVP 944
           G  ++GN +G+  +  EM A G+       + ++   A+ GK+ +A  +L  M +  + P
Sbjct: 794 GQAKIGNMKGSMTIYCEMIADGLVPKTSTYNVLISEFANVGKMLQARELLKEMGKRGVSP 853

Query: 945 TIATFTTLIHKFCKEAKFVDALKLKGTMELSGVK 978
             +T+ T+I   CK     D    K  M L+  K
Sbjct: 854 NTSTYCTMISGLCKLCTHPDVEWNKKAMYLAEAK 887

Arabidopsis thaliana (taxid: 3702)

>sp|Q940A6|PP325_ARATH Pentatricopeptide repeat-containing protein At4g19440, chloroplastic OS=Arabidopsis thaliana GN=At4g19440 PE=2 SV=2

 Score =  282 bits (722), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 182/616 (29%), Positives = 302/616 (49%), Gaps = 7/616 (1%)

Query: 109 DLLIRVYL----REGMVEYALETFQLMGFRGFNPSVYTCNMMLSFMLKDRRVDSVWLLFD 164
           DLLI VY     R+G    AL+ F ++  +G  PS  TCN++L+ +++          F 
Sbjct: 205 DLLIEVYCTQFKRDGCY-LALDVFPVLANKGMFPSKTTCNILLTSLVRANEFQKCCEAF- 262

Query: 165 DMLDRKICPNVATFNILINVSCVEGKLKKAGYLLRKMEESGYVPNIVTYNTLLNWYCKKG 224
           D++ + + P+V  F   IN  C  GK+++A  L  KMEE+G  PN+VT+NT+++     G
Sbjct: 263 DVVCKGVSPDVYLFTTAINAFCKGGKVEEAVKLFSKMEEAGVAPNVVTFNTVIDGLGMCG 322

Query: 225 RYKAAFKLIDCMASKGIEADVCTYNMFIDDLCRNNRSAKGYLLLKNMRKRMITPNEVTYN 284
           RY  AF   + M  +G+E  + TY++ +  L R  R    Y +LK M K+   PN + YN
Sbjct: 323 RYDEAFMFKEKMVERGMEPTLITYSILVKGLTRAKRIGDAYFVLKEMTKKGFPPNVIVYN 382

Query: 285 TLINGFVKEGKIQVASRVFDEMSMLNFSPNSITYNELIDGHCCKGNFKEAFRLLAMMEEM 344
            LI+ F++ G +  A  + D M     S  S TYN LI G+C  G    A RLL  M  +
Sbjct: 383 NLIDSFIEAGSLNKAIEIKDLMVSKGLSLTSSTYNTLIKGYCKNGQADNAERLLKEMLSI 442

Query: 345 GLRPNEVSYGALLNGFCKHAKFDLARSLLERMRTNGISISCIAYTSVIDGLCKCGLLDEA 404
           G   N+ S+ +++   C H  FD A   +  M    +S      T++I GLCK G   +A
Sbjct: 443 GFNVNQGSFTSVICLLCSHLMFDSALRFVGEMLLRNMSPGGGLLTTLISGLCKHGKHSKA 502

Query: 405 MQLFNKMFKDGLNPDLITFSVLINGFCKVGMTRKAKAVLCKMYRDGLVPNKIIYSTLIYY 464
           ++L+ +    G   D  T + L++G C+ G   +A  +  ++   G V +++ Y+TLI  
Sbjct: 503 LELWFQFLNKGFVVDTRTSNALLHGLCEAGKLDEAFRIQKEILGRGCVMDRVSYNTLISG 562

Query: 465 FCKMGKVTEAMKVYAVMNRNAQGSDHFTCNMLVASLCKGGKVCEAEDYVGHMKRIGVVPN 524
            C   K+ EA      M +     D++T ++L+  L    KV EA  +    KR G++P+
Sbjct: 563 CCGKKKLDEAFMFLDEMVKRGLKPDNYTYSILICGLFNMNKVEEAIQFWDDCKRNGMLPD 622

Query: 525 SITFDCMIDGYGTLGDGLKAFSMFDEMVKLGHHPSIFTYGSLLKGLCKGGNLKEAKRFLN 584
             T+  MIDG        +    FDEM+     P+   Y  L++  C+ G L  A     
Sbjct: 623 VYTYSVMIDGCCKAERTEEGQEFFDEMMSKNVQPNTVVYNHLIRAYCRSGRLSMALELRE 682

Query: 585 SLHHIPSAVDTVAYNTILAETCKSGNLWEAIVLLDEMVQFNLLPDRYTYTILLAGLCRKG 644
            + H   + ++  Y +++        + EA +L +EM    L P+ + YT L+ G  + G
Sbjct: 683 DMKHKGISPNSATYTSLIKGMSIISRVEEAKLLFEEMRMEGLEPNVFHYTALIDGYGKLG 742

Query: 645 KVVSALLFFEKVVSKRTFSPNNVMFTCLVDGLFKAGQSKAAMHISKIMDKEGVYPDTIAF 704
           ++V       ++ SK    PN + +T ++ G  + G    A  +   M ++G+ PD+I +
Sbjct: 743 QMVKVECLLREMHSKNV-HPNKITYTVMIGGYARDGNVTEASRLLNEMREKGIVPDSITY 801

Query: 705 NAVMDGFSRMGNMMMA 720
              + G+ + G ++ A
Sbjct: 802 KEFIYGYLKQGGVLEA 817

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	1211
359493281	2037	PREDICTED: pentatricopeptide repeat-cont	0.885	0.526	0.676	0.0
147803305	1356	hypothetical protein VITISV_002797 [Viti	0.885	0.790	0.676	0.0
255563546	1071	pentatricopeptide repeat-containing prot	0.882	0.998	0.657	0.0
449446855	1079	PREDICTED: pentatricopeptide repeat-cont	0.890	1.0	0.588	0.0
356558657	1078	PREDICTED: pentatricopeptide repeat-cont	0.867	0.974	0.597	0.0
449489553	1079	PREDICTED: LOW QUALITY PROTEIN: pentatri	0.890	1.0	0.587	0.0
334188438	1136	pentatricopeptide repeat-containing prot	0.890	0.948	0.571	0.0
223635748	1096	RecName: Full=Pentatricopeptide repeat-c	0.890	0.983	0.571	0.0
8843735	1274	unnamed protein product [Arabidopsis tha	0.927	0.881	0.552	0.0
297793055	1245	pentatricopeptide repeat-containing prot	0.803	0.781	0.570	0.0

>gi|359493281|ref|XP_002272603.2| PREDICTED: pentatricopeptide repeat-containing protein At5g55840-like [Vitis vinifera]

 Score = 1504 bits (3895), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 727/1075 (67%), Positives = 863/1075 (80%), Gaps = 3/1075 (0%)

Query: 1    MEKSIYTLLTIDRWESLNHMEYKLASLRPVHGRLALKFLNWVMNQPGLELKHLTHILCLT 60
            +E SIYT+LTIDRWESLNHM Y L  LRPVHGRLALKFL WV+ QPGLELKHLTH+ CLT
Sbjct: 810  VESSIYTILTIDRWESLNHMAYGLKQLRPVHGRLALKFLKWVIKQPGLELKHLTHMYCLT 869

Query: 61   THVLVKTRMYEDAKLILRQLAQMGIGQNSVFGSLMNTYPLCNSNPSVFDLLIRVYLREGM 120
             H+LVK RMY+ AK ILR L QMGIG  S+FG+LM+TYPLCNS PSVFDLLIRVYL+EGM
Sbjct: 870  AHILVKARMYDSAKSILRHLCQMGIGSKSIFGALMDTYPLCNSIPSVFDLLIRVYLKEGM 929

Query: 121  VEYALETFQLMGFRGFNPSVYTCNMMLSFMLKDRRVDSVWLLFDDMLDRKICPNVATFNI 180
            ++YA+ETF+L+G  GF PSVYTCNM+L+ M+KD+R + VW LF +M D+ ICPNV TFNI
Sbjct: 930  IDYAVETFELVGLVGFKPSVYTCNMILASMVKDKRTELVWSLFREMSDKGICPNVGTFNI 989

Query: 181  LINVSCVEGKLKKAGYLLRKMEESGYVPNIVTYNTLLNWYCKKGRYKAAFKLIDCMASKG 240
            LIN  CVEG LKKAG LL++MEE+G+VP IVTYNTLLNWYCKKGRYKAA +LID M  KG
Sbjct: 990  LINGLCVEGNLKKAGNLLKQMEENGFVPTIVTYNTLLNWYCKKGRYKAAIELIDYMICKG 1049

Query: 241  IEADVCTYNMFIDDLCRNNRSAKGYLLLKNMRKRMITPNEVTYNTLINGFVKEGKIQVAS 300
            IEADVCTYN+FID+LC N+RSAK YLLLK MRK MI+PNEVTYNTLINGFVKEGKI VA+
Sbjct: 1050 IEADVCTYNVFIDNLCTNHRSAKAYLLLKKMRKEMISPNEVTYNTLINGFVKEGKIGVAA 1109

Query: 301  RVFDEMSMLNFSPNSITYNELIDGHCCKGNFKEAFRLLAMMEEMGLRPNEVSYGALLNGF 360
            +VF+EMS  + SPN +TYN LI GHC  G+F+EA RLL  ME  GLR NEV+YG LLNG 
Sbjct: 1110 QVFNEMSKFDLSPNCVTYNALIGGHCHVGDFEEALRLLDHMEAAGLRLNEVTYGTLLNGL 1169

Query: 361  CKHAKFDLARSLLERMRTNGISISCIAYTSVIDGLCKCGLLDEAMQLFNKMFKDGLNPDL 420
            CKH KF+LA+ LLERMR N + +  IAYT +IDGLCK G+LDEA+QL   M+KDG+NPD+
Sbjct: 1170 CKHEKFELAKRLLERMRVNDMVVGHIAYTVLIDGLCKNGMLDEAVQLVGNMYKDGVNPDV 1229

Query: 421  ITFSVLINGFCKVGMTRKAKAVLCKMYRDGLVPNKIIYSTLIYYFCKMGKVTEAMKVYAV 480
            IT+S LINGFC+VG  + AK ++C+MYR GLV NKIIYSTLIY FC+ G VTEAMKVYAV
Sbjct: 1230 ITYSSLINGFCRVGNIKSAKEIICRMYRSGLVLNKIIYSTLIYNFCQHGNVTEAMKVYAV 1289

Query: 481  MNRNAQGSDHFTCNMLVASLCKGGKVCEAEDYVGHMKRIGVVPNSITFDCMIDGYGTLGD 540
            MN N  G+DHFTCN+LV+SLC+ GK+ EAE ++ HM RIG+VPNSIT+DC+I+GYG++GD
Sbjct: 1290 MNCNGHGADHFTCNVLVSSLCRDGKLGEAEKFLCHMSRIGLVPNSITYDCIINGYGSIGD 1349

Query: 541  GLKAFSMFDEMVKLGHHPSIFTYGSLLKGLCKGGNLKEAKRFLNSLHHIPSAVDTVAYNT 600
             L AFS FD+M+K G HPS FTYGSLLKGLCKGGNL EAK+FLN LH+IP AVD+V YNT
Sbjct: 1350 PLNAFSFFDDMIKCGQHPSFFTYGSLLKGLCKGGNLVEAKKFLNRLHYIPGAVDSVMYNT 1409

Query: 601  ILAETCKSGNLWEAIVLLDEMVQFNLLPDRYTYTILLAGLCRKGKVVSALLFFEKVVSKR 660
            +LAETCKSGNL EA+ L D+MVQ N+LPD YTY+ LL GLCRKGK V+A+  F   + + 
Sbjct: 1410 LLAETCKSGNLHEAVALFDKMVQNNVLPDSYTYSSLLTGLCRKGKAVTAVCLFGTAMGRG 1469

Query: 661  TFSPNNVMFTCLVDGLFKAGQSKAAMHISKIMDKEGVYPDTIAFNAVMDGFSRMGNMMMA 720
            T  PN+VM+TCLVDGL KAG  KAA +  + M K+G  PDT+AFNA++D  SR G MM A
Sbjct: 1470 TLFPNHVMYTCLVDGLSKAGHPKAAFYFFEEMMKKGTCPDTVAFNAIIDSCSRRGQMMKA 1529

Query: 721  NDLLSTMRSRKLCPSLATYNILLHGYSKKKDLLMCSMLLNTMKMEGLLPDKLTCHSLILG 780
            ND  STMR   +CP+LATYNILLHG+SKK+ LL    L +TM  EG+ PDKLT HSLILG
Sbjct: 1530 NDFFSTMRWWGVCPNLATYNILLHGFSKKQALLRYLSLYSTMMREGIFPDKLTFHSLILG 1589

Query: 781  FCETGMLEVGFKFLKKMIAEGTMVDCFTFNVLMRKCCEAGEMGKAFDLFNIMNMLGVVPD 840
              ++G+ ++G K L KMI EGT+ D FTFN+L+ K  E+G+M KAFDL N MN LGV PD
Sbjct: 1590 LSKSGIPDLGVKLLGKMIMEGTLADQFTFNILINKYSESGKMRKAFDLVNFMNTLGVFPD 1649

Query: 841  TNTQDAIIMGLKRIAAFQESHFVLRGMAEKGLTPKCTQYITLINGMCRVGNFQGAFKLKD 900
             +T + I  GL + +AF+ES  VL  M E G+ PK  QYITLINGMCRVG+ QGAFKLKD
Sbjct: 1650 RDTYNHIFNGLNKKSAFRESTVVLHEMLENGVIPKHAQYITLINGMCRVGDIQGAFKLKD 1709

Query: 901  EMEALGISSSDVAESAMVRGLAHCGKVEEAMLVLNRMLRMRLVPTIATFTTLIHKFCKEA 960
            EMEALG  S +VAESAMVRGL HCGK E+AMLVL+ MLRMRL+PTIATFTTL+H+FC++A
Sbjct: 1710 EMEALGFGSHEVAESAMVRGLLHCGKTEDAMLVLDHMLRMRLLPTIATFTTLMHRFCRDA 1769

Query: 961  KFVDALKLKGTMELSGVKLDVVSYNVLISGLCANGDVMPAFELYEEMKHKGLCPNSTTYS 1020
            K  +ALKLKG MEL G+KLDVV+YNVLI G+CANGD   AFELYEEM+H+ LCPN TTY+
Sbjct: 1770 KIAEALKLKGVMELCGLKLDVVAYNVLIMGMCANGDSAAAFELYEEMRHRDLCPNITTYA 1829

Query: 1021 VLIDAISKKENNLVKGEILLKDIQERGFISWNWDGSTQHLHEGLINALRKLKSFK 1075
            VL+DAIS   NNL++GE LL D+QERG ISW   GSTQHL + L  A+ KL   +
Sbjct: 1830 VLVDAISAA-NNLIQGEKLLTDLQERGLISWG--GSTQHLDKELTVAMGKLNYIR 1881

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147803305|emb|CAN75473.1| hypothetical protein VITISV_002797 [Vitis vinifera]

 Score = 1501 bits (3887), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 727/1075 (67%), Positives = 863/1075 (80%), Gaps = 3/1075 (0%)

Query: 1    MEKSIYTLLTIDRWESLNHMEYKLASLRPVHGRLALKFLNWVMNQPGLELKHLTHILCLT 60
            +E SIYT+LTIDRWESLNHM Y L  LRPVHGRLALKFL WV+ QPGLELKHLTH+ CLT
Sbjct: 59   VESSIYTILTIDRWESLNHMAYGLKQLRPVHGRLALKFLKWVIKQPGLELKHLTHMYCLT 118

Query: 61   THVLVKTRMYEDAKLILRQLAQMGIGQNSVFGSLMNTYPLCNSNPSVFDLLIRVYLREGM 120
             H+LVK RMY+ AK ILR L QMGIG  S+FG+LM+TYPLCNS PSVFDLLIRVYL+EGM
Sbjct: 119  AHILVKARMYDSAKSILRHLCQMGIGSKSIFGALMDTYPLCNSIPSVFDLLIRVYLKEGM 178

Query: 121  VEYALETFQLMGFRGFNPSVYTCNMMLSFMLKDRRVDSVWLLFDDMLDRKICPNVATFNI 180
            ++YA+ETF+L+G  GF PSVYTCNM+L+ M+KD+R + VW LF +M D+ ICPNV TFNI
Sbjct: 179  IDYAVETFELVGLVGFKPSVYTCNMILASMVKDKRTELVWSLFREMSDKGICPNVGTFNI 238

Query: 181  LINVSCVEGKLKKAGYLLRKMEESGYVPNIVTYNTLLNWYCKKGRYKAAFKLIDCMASKG 240
            LIN  CVEG LKKAG LL++MEE+G+VP IVTYNTLLNWYCKKGRYKAA +LID M  KG
Sbjct: 239  LINGLCVEGNLKKAGNLLKQMEENGFVPTIVTYNTLLNWYCKKGRYKAAIELIDYMICKG 298

Query: 241  IEADVCTYNMFIDDLCRNNRSAKGYLLLKNMRKRMITPNEVTYNTLINGFVKEGKIQVAS 300
            IEADVCTYN+FID+LC N+RSAK YLLLK MRK MI+PNEVTYNTLINGFVKEGKI VA+
Sbjct: 299  IEADVCTYNVFIDNLCTNHRSAKAYLLLKKMRKEMISPNEVTYNTLINGFVKEGKIGVAA 358

Query: 301  RVFDEMSMLNFSPNSITYNELIDGHCCKGNFKEAFRLLAMMEEMGLRPNEVSYGALLNGF 360
            +VF+EMS  + SPN +TYN LI GHC  G+F+EA RLL  ME  GLR NEV+YG LLNG 
Sbjct: 359  QVFNEMSKFDLSPNCVTYNALIGGHCHVGDFEEALRLLDHMEAAGLRLNEVTYGTLLNGL 418

Query: 361  CKHAKFDLARSLLERMRTNGISISCIAYTSVIDGLCKCGLLDEAMQLFNKMFKDGLNPDL 420
            CKH KF+LA+ LLERMR N + +  IAYT +IDGLCK G+LDEA+QL   M+KDG+NPD+
Sbjct: 419  CKHEKFELAKRLLERMRVNDMVVGHIAYTVLIDGLCKNGMLDEAVQLVGNMYKDGVNPDV 478

Query: 421  ITFSVLINGFCKVGMTRKAKAVLCKMYRDGLVPNKIIYSTLIYYFCKMGKVTEAMKVYAV 480
            IT+S LINGFC+VG  + AK ++C+MYR GLV NKIIYSTLIY FC+ G VTEAMKVYAV
Sbjct: 479  ITYSSLINGFCRVGNIKSAKEIICRMYRSGLVLNKIIYSTLIYNFCQHGNVTEAMKVYAV 538

Query: 481  MNRNAQGSDHFTCNMLVASLCKGGKVCEAEDYVGHMKRIGVVPNSITFDCMIDGYGTLGD 540
            MN N  G+DHFTCN+LV+SLC+ GK+ EAE ++ HM RIG+VPNSIT+DC+I+GYG++GD
Sbjct: 539  MNCNGHGADHFTCNVLVSSLCRDGKLGEAEKFLCHMSRIGLVPNSITYDCIINGYGSIGD 598

Query: 541  GLKAFSMFDEMVKLGHHPSIFTYGSLLKGLCKGGNLKEAKRFLNSLHHIPSAVDTVAYNT 600
             L AFS FD+M+K G HPS FTYGSLLKGLCKGGNL EAK+FLN LH+IP AVD+V YNT
Sbjct: 599  PLNAFSFFDDMIKCGQHPSFFTYGSLLKGLCKGGNLVEAKKFLNRLHYIPGAVDSVMYNT 658

Query: 601  ILAETCKSGNLWEAIVLLDEMVQFNLLPDRYTYTILLAGLCRKGKVVSALLFFEKVVSKR 660
            +LAETCKSGNL EA+ L D+MVQ N+LPD YTY+ LL GLCRKGK V+A+  F   + + 
Sbjct: 659  LLAETCKSGNLHEAVALFDKMVQNNVLPDSYTYSSLLTGLCRKGKAVTAVCLFGTAMGRG 718

Query: 661  TFSPNNVMFTCLVDGLFKAGQSKAAMHISKIMDKEGVYPDTIAFNAVMDGFSRMGNMMMA 720
            T  PN+VM+TCLVDGL KAG  KAA +  + M K+G  PDT+AFNA++D  SR G MM A
Sbjct: 719  TLFPNHVMYTCLVDGLSKAGHPKAAFYFFEEMMKKGTCPDTVAFNAIIDSCSRRGQMMKA 778

Query: 721  NDLLSTMRSRKLCPSLATYNILLHGYSKKKDLLMCSMLLNTMKMEGLLPDKLTCHSLILG 780
            ND  STMR   +CP+LATYNILLHG+SKK+ LL    L +TM  EG+ PDKLT HSLILG
Sbjct: 779  NDFFSTMRWWGVCPNLATYNILLHGFSKKQALLRYLSLYSTMMREGIFPDKLTFHSLILG 838

Query: 781  FCETGMLEVGFKFLKKMIAEGTMVDCFTFNVLMRKCCEAGEMGKAFDLFNIMNMLGVVPD 840
              ++G+ ++G K L KMI EGT+ D FTFN+L+ K  E+G+M KAFDL N MN LGV PD
Sbjct: 839  LSKSGIPDLGVKLLGKMIMEGTLADQFTFNILINKYSESGKMRKAFDLVNFMNTLGVFPD 898

Query: 841  TNTQDAIIMGLKRIAAFQESHFVLRGMAEKGLTPKCTQYITLINGMCRVGNFQGAFKLKD 900
             +T + I  GL + +AF+ES  VL  M E G+ PK  QYITLINGMCRVG+ QGAFKLKD
Sbjct: 899  RDTYNHIFNGLNKKSAFRESTVVLHEMLENGVIPKHAQYITLINGMCRVGDIQGAFKLKD 958

Query: 901  EMEALGISSSDVAESAMVRGLAHCGKVEEAMLVLNRMLRMRLVPTIATFTTLIHKFCKEA 960
            EMEALG  S +VAESAMVRGL HCGK E+AMLVL+ MLRMRL+PTIATFTTL+H+FC++A
Sbjct: 959  EMEALGFGSHEVAESAMVRGLLHCGKTEDAMLVLDHMLRMRLLPTIATFTTLMHRFCRDA 1018

Query: 961  KFVDALKLKGTMELSGVKLDVVSYNVLISGLCANGDVMPAFELYEEMKHKGLCPNSTTYS 1020
            K  +ALKLKG MEL G+KLDVV+YNVLI G+CANGD   AFELYEEM+H+ LCPN TTY+
Sbjct: 1019 KIAEALKLKGVMELCGLKLDVVAYNVLIMGMCANGDSAAAFELYEEMRHRDLCPNITTYA 1078

Query: 1021 VLIDAISKKENNLVKGEILLKDIQERGFISWNWDGSTQHLHEGLINALRKLKSFK 1075
            VL+DAIS   NNL++GE LL D+QERG ISW   GSTQHL + L  A+ KL   +
Sbjct: 1079 VLVDAIS-AANNLIQGEKLLTDLQERGLISWG--GSTQHLDKELTVAMGKLNYIR 1130

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255563546|ref|XP_002522775.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] gi|223538013|gb|EEF39626.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis]

 Score = 1467 bits (3798), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 706/1073 (65%), Positives = 857/1073 (79%), Gaps = 4/1073 (0%)

Query: 8    LLTIDRWESLNHMEYKLASLRPVHGRLALKFLNWVMNQPGLELKHLTHILCLTTHVLVKT 67
            +LTIDRWESLNHMEYKLASLRPVHGRLALKFLNWV+ QPGLEL+HLTH+L +TTH+LV+ 
Sbjct: 1    MLTIDRWESLNHMEYKLASLRPVHGRLALKFLNWVIQQPGLELRHLTHMLSITTHILVRA 60

Query: 68   RMYEDAKLILRQLAQMGIGQNSVFGSLMNTYPLCNSNPSVFDLLIRVYLREGMVEYALET 127
            R+YE+AK IL+ L+QMG+G  SVFG+LMNTYPLC SNPSVFDLLIRVYLREGMV  ALET
Sbjct: 61   RLYENAKSILKHLSQMGVGSKSVFGALMNTYPLCKSNPSVFDLLIRVYLREGMVGDALET 120

Query: 128  FQLMGFRGFNPSVYTCNMMLSFMLKDRRVDSVWLLFDDMLDRKICPNVATFNILINVSCV 187
            F+LMG RGFNPSVYTCNM+L  ++K+R+V +VWL F +ML R++CP+V+TFNILINV CV
Sbjct: 121  FRLMGIRGFNPSVYTCNMLLGKLVKERKVGAVWLFFKEMLARRVCPDVSTFNILINVLCV 180

Query: 188  EGKLKKAGYLLRKMEESGYVPNIVTYNTLLNWYCKKGRYKAAFKLIDCMASKGIEADVCT 247
            EGKLKKAGYLL+KMEESGYVP++VTYNT+LNWYCKKGRYKAA +LID M SKGIEAD CT
Sbjct: 181  EGKLKKAGYLLKKMEESGYVPSVVTYNTVLNWYCKKGRYKAALELIDQMGSKGIEADACT 240

Query: 248  YNMFIDDLCRNNRSAKGYLLLKNMRKRMITPNEVTYNTLINGFVKEGKIQVASRVFDEMS 307
            YNM +DDLC+NNRSAKGYLLLK MRKRMI+PNE+TYN++INGFVKEGKI  A+R+F EMS
Sbjct: 241  YNMLVDDLCKNNRSAKGYLLLKKMRKRMISPNEITYNSIINGFVKEGKIGAATRIFQEMS 300

Query: 308  MLNFSPNSITYNELIDGHCCKGNFKEAFRLLAMMEEMGLRPNEVSYGALLNGFCKHAKFD 367
            MLN  PN +TYN LIDGHC  GNF++A  +L MME  G +PNEVSY ALLNG C+HAKF+
Sbjct: 301  MLNLLPNCVTYNALIDGHCHDGNFEQALTILEMMEATGPKPNEVSYSALLNGLCRHAKFE 360

Query: 368  LARSLLERMRTNGISISCIAYTSVIDGLCKCGLLDEAMQLFNKMFKDGLNPDLITFSVLI 427
            L++S+LERMR NG+ + CIAYT++IDGLC+ GLL+E+++L +KM KDG+ PD++TFSVLI
Sbjct: 361  LSKSILERMRMNGMIVGCIAYTAMIDGLCRNGLLNESVKLLDKMLKDGVVPDVVTFSVLI 420

Query: 428  NGFCKVGMTRKAKAVLCKMYRDGLVPNKIIYSTLIYYFCKMGKVTEAMKVYAVMNRNAQG 487
            NGFC+VG  +  K ++CKMY+ GL PN IIY+TLIY +CK G V EA KVY  M+R    
Sbjct: 421  NGFCRVGKIKNVKEIICKMYKAGLAPNSIIYTTLIYNYCKTGDVVEAFKVYVAMSRIGYD 480

Query: 488  SDHFTCNMLVASLCKGGKVCEAEDYVGHMKRIGVVPNSITFDCMIDGYGTLGDGLKAFSM 547
            ++ F CN+LV+SLCK GKV  AE +  HM +IG VPNSITFDC+I+GYG  G+GLKAFSM
Sbjct: 481  ANCFICNVLVSSLCKDGKVGVAEYFFHHMSKIGNVPNSITFDCIINGYGNSGNGLKAFSM 540

Query: 548  FDEMVKLGHHPSIFTYGSLLKGLCKGGNLKEAKRFLNSLHHIPSAVDTVAYNTILAETCK 607
            FDEM+K GHHPS FTYG LLK LC+ G  KEAKR L+ LH+IPSAVDTV YNTIL ET K
Sbjct: 541  FDEMIKAGHHPSHFTYGGLLKALCRAGKFKEAKRLLDKLHYIPSAVDTVTYNTILVETFK 600

Query: 608  SGNLWEAIVLLDEMVQFNLLPDRYTYTILLAGLCRKGKVVSALLFFEKVVSKRTFSPNNV 667
            SG L +A+ L DEMVQ N+LPD YTY I+ AGL R+GK+V+AL F+  ++ K   SP  V
Sbjct: 601  SGMLTDAVALFDEMVQRNVLPDSYTYAIIFAGLIRRGKMVAALHFYGNLLGKGAVSPEKV 660

Query: 668  MFTCLVDGLFKAGQSKAAMHISKIMDKEGVYPDTIAFNAVMDGFSRMGNMMMANDLLSTM 727
            M+T  VDGLF+AGQSKAA++  + M+K G+  D IA N +++G+SRMG M  A D+ + M
Sbjct: 661  MYTTFVDGLFRAGQSKAALYFCEDMEKNGLCADLIATNVILNGYSRMGKMAKAGDIFTMM 720

Query: 728  RSR-KLCPSLATYNILLHGYSKKKDLLMCSMLLNTMKMEGLLPDKLTCHSLILGFCETGM 786
             S   + PSLATYNILLHGY+KKK+L  CS L N M   G+ PDKLTCHSLILGFC++ M
Sbjct: 721  WSGITISPSLATYNILLHGYAKKKNLSKCSNLYNIMMRTGIFPDKLTCHSLILGFCKSAM 780

Query: 787  LEVGFKFLKKMIAEGTMVDCFTFNVLMRKCCEAGEMGKAFDLFNIMNMLGVVPDTNTQDA 846
            L+VG K LKKM+ +G  VD  TFN+L+ K CE  E+GKAFDL NIMN+  + PD  T D+
Sbjct: 781  LDVGLKLLKKMLLDGVAVDQCTFNMLIMKYCETDEVGKAFDLVNIMNLFDIFPDMTTHDS 840

Query: 847  IIMGLKRIAAFQESHFVLRGMAEKGLTPKCTQYITLINGMCRVGNFQGAFKLKDEMEALG 906
            II  L R++  QESH +L  M E+G  P   QYI L+N MCR+G+  GAFKLKDEMEALG
Sbjct: 841  IISVLSRVSTVQESHLLLHEMLERGCIPDRRQYIALVNRMCRMGHIHGAFKLKDEMEALG 900

Query: 907  ISSSDVAESAMVRGLAHCGKVEEAMLVLNRMLRMRLVPTIATFTTLIHKFCKEAKFVDAL 966
            ISS DVAESA+VRGLA CGKVEEA LVL+ MLR  L+PTIATFTTL+H FC+    V+AL
Sbjct: 901  ISSGDVAESALVRGLAKCGKVEEAKLVLDFMLRKSLIPTIATFTTLMHMFCRNESLVEAL 960

Query: 967  KLKGTMELSGVKLDVVSYNVLISGLCANGDVMPAFELYEEMKHKGLCPNSTTYSVLIDAI 1026
            KLK TM+   VKLDV++YNVLISGLCA+GDV  A +LY+E+K +GL PN TTY +LIDAI
Sbjct: 961  KLKDTMDFCDVKLDVIAYNVLISGLCADGDVASALKLYKEIKQRGLWPNMTTYCILIDAI 1020

Query: 1027 SKKENNLVKGEILLKDIQERGFISWNWDGSTQHLHEGLINALRKLKSFKKNRR 1079
               + +L KGE+LLKD+QERG IS +W G    + +GLI A+ +LKS K NRR
Sbjct: 1021 FTNDISLAKGEVLLKDLQERGVISGHWCGG---IRQGLIIAMDRLKSMKANRR 1070

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449446855|ref|XP_004141186.1| PREDICTED: pentatricopeptide repeat-containing protein At5g55840-like [Cucumis sativus]

 Score = 1308 bits (3384), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 636/1080 (58%), Positives = 807/1080 (74%), Gaps = 1/1080 (0%)

Query: 1    MEKSIYTLLTIDRWESLNHMEYKLASLRPVHGRLALKFLNWVMNQPGLELKHLTHILCLT 60
            ME SIYT+LTI RWESLNHM YK ASLRP+HG LALKFL WV+ QPGLE  HLTHIL +T
Sbjct: 1    MENSIYTILTIGRWESLNHMNYKFASLRPIHGVLALKFLKWVIKQPGLEPNHLTHILGIT 60

Query: 61   THVLVKTRMYEDAKLILRQLAQMGIGQNSVFGSLMNTYPLCNSNPSVFDLLIRVYLREGM 120
            THVLVK R+Y  AK IL+ LAQ   G N +FG LM+TYPLC+SNP+VFDLLIRVYLR+GM
Sbjct: 61   THVLVKARLYGYAKSILKHLAQKNSGSNFLFGVLMDTYPLCSSNPAVFDLLIRVYLRQGM 120

Query: 121  VEYALETFQLMGFRGFNPSVYTCNMMLSFMLKDRRVDSVWLLFDDMLDRKICPNVATFNI 180
            V +A+ TF  M  RGF PSVYTCNM+++ M+K+ R   VW  F  ML  ++CPNV++FNI
Sbjct: 121  VGHAVNTFSSMLIRGFKPSVYTCNMIMASMVKNCRAHLVWSFFKQMLTSRVCPNVSSFNI 180

Query: 181  LINVSCVEGKLKKAGYLLRKMEESGYVPNIVTYNTLLNWYCKKGRYKAAFKLIDCMASKG 240
            LI+V CV+GKLKKA  +L  ME +GYVP IV+YNTLL+W CKKGR+K A  LI  M  KG
Sbjct: 181  LISVLCVQGKLKKAVNILTMMERNGYVPTIVSYNTLLSWCCKKGRFKFALVLIHHMECKG 240

Query: 241  IEADVCTYNMFIDDLCRNNRSAKGYLLLKNMRKRMITPNEVTYNTLINGFVKEGKIQVAS 300
            I+ADVCTYNMFID LCRN+RSA+GYL+LK MR +MITPNEV+YNTLINGFVKEGKI VA+
Sbjct: 241  IQADVCTYNMFIDSLCRNSRSAQGYLVLKKMRNKMITPNEVSYNTLINGFVKEGKIGVAT 300

Query: 301  RVFDEMSMLNFSPNSITYNELIDGHCCKGNFKEAFRLLAMMEEMGLRPNEVSYGALLNGF 360
            RVF+EM  LN SPN ITYN LI+G+C  GNF+EA R+L +ME   +RPNEV+ G LLNG 
Sbjct: 301  RVFNEMIELNLSPNLITYNILINGYCINGNFEEALRVLDVMEANDVRPNEVTIGTLLNGL 360

Query: 361  CKHAKFDLARSLLERMRTNGISISCIAYTSVIDGLCKCGLLDEAMQLFNKMFKDGLNPDL 420
             K AKFD+AR++LER   N  S++CI++T +IDGLC+ GLLDEA QL  +M KDG++PD+
Sbjct: 361  YKSAKFDVARNILERYCINRTSLNCISHTVMIDGLCRNGLLDEAFQLLIEMCKDGVHPDI 420

Query: 421  ITFSVLINGFCKVGMTRKAKAVLCKMYRDGLVPNKIIYSTLIYYFCKMGKVTEAMKVYAV 480
            ITFSVLINGFCKVG   KAK V+ K+YR+G VPN +I+STLIY  CK+G V EAMK YA 
Sbjct: 421  ITFSVLINGFCKVGNINKAKEVMSKIYREGFVPNNVIFSTLIYNSCKVGNVYEAMKFYAA 480

Query: 481  MNRNAQGSDHFTCNMLVASLCKGGKVCEAEDYVGHMKRIGVVPNSITFDCMIDGYGTLGD 540
            MN N Q +D+FTCN LVASLC+ GK+ EAE+++ H+ RIG+VPNS+TFDC+I+GY  +GD
Sbjct: 481  MNLNGQNADNFTCNSLVASLCENGKLVEAEEFLHHISRIGLVPNSVTFDCIINGYANVGD 540

Query: 541  GLKAFSMFDEMVKLGHHPSIFTYGSLLKGLCKGGNLKEAKRFLNSLHHIPSAVDTVAYNT 600
            G  AFS+FD M+  GHHPS FTYGSLLK LCKG N  EA++ L  LH IP AVDT++YNT
Sbjct: 541  GSGAFSVFDRMISCGHHPSPFTYGSLLKVLCKGQNFWEARKLLKKLHCIPLAVDTISYNT 600

Query: 601  ILAETCKSGNLWEAIVLLDEMVQFNLLPDRYTYTILLAGLCRKGKVVSALLFFEKVVSKR 660
            ++ E  KSGNL EA+ L +EM+Q N+LPD YTYT +L+GL R+G++V A +F  +++ K 
Sbjct: 601  LIVEISKSGNLLEAVRLFEEMIQNNILPDSYTYTCILSGLIREGRLVCAFIFLGRLMQKE 660

Query: 661  TFSPNNVMFTCLVDGLFKAGQSKAAMHISKIMDKEGVYPDTIAFNAVMDGFSRMGNMMMA 720
              + N++++TC +DGLFKAGQSKAA+++ K M+++G+  D IA N++ DG+SRMG +  A
Sbjct: 661  ILTLNSIVYTCFIDGLFKAGQSKAALYLFKEMEEKGLSLDLIALNSITDGYSRMGKVFSA 720

Query: 721  NDLLSTMRSRKLCPSLATYNILLHGYSKKKDLLMCSMLLNTMKMEGLLPDKLTCHSLILG 780
            + L+S  R++ + P+L T+NILLHGYS+ +D++ C  L N M+  G  P++LT HSLILG
Sbjct: 721  SSLISKTRNKNVIPNLTTFNILLHGYSRGQDIMSCFKLYNLMRRSGFFPNRLTYHSLILG 780

Query: 781  FCETGMLEVGFKFLKKMIAEGTMVDCFTFNVLMRKCCEAGEMGKAFDLFNIMNMLGVVPD 840
             C  GMLE+G K LK  IAE + +D  TFN+L+RKCCE  ++ K  DL + M +  V  D
Sbjct: 781  LCNHGMLELGIKMLKMFIAESSTIDDLTFNMLIRKCCEINDLDKVIDLTHNMEVFRVSLD 840

Query: 841  TNTQDAIIMGLKRIAAFQESHFVLRGMAEKGLTPKCTQYITLINGMCRVGNFQGAFKLKD 900
             +TQ A+   L R    Q     +  M +KG  P   QY T++  MCRVG+ QGAFKLKD
Sbjct: 841  KDTQKAVTDVLVRRMVSQNYFVFMHEMLKKGFIPTSKQYCTMMKRMCRVGDIQGAFKLKD 900

Query: 901  EMEALGISSSDVAESAMVRGLAHCGKVEEAMLVLNRMLRMRLVPTIATFTTLIHKFCKEA 960
            +M ALGIS  D AE AMVRGLA CGK+EEAM +L RMLRM+ +PT +TFTTL+H FCK+ 
Sbjct: 901  QMVALGISLDDAAECAMVRGLALCGKIEEAMWILQRMLRMKKIPTTSTFTTLMHVFCKKD 960

Query: 961  KFVDALKLKGTMELSGVKLDVVSYNVLISGLCANGDVMPAFELYEEMKHKGLCPNSTTYS 1020
             F +A  LK  ME   VKLD+V+YNVLIS  CANGDV+ A + YEE+K KGL PN TTY 
Sbjct: 961  NFKEAHNLKILMEHYRVKLDIVAYNVLISACCANGDVITALDFYEEIKQKGLLPNMTTYR 1020

Query: 1021 VLIDAISKKENNLVKGEILLKDIQERGFISWNWDGSTQHLHEGLINALRKLKSFKKNRRN 1080
            VL+ AIS K + + +GEI+LKD+ +RG +S   DG +Q      + A++KL S K N+ N
Sbjct: 1021 VLVSAISTK-HYVSRGEIVLKDLNDRGLVSGYLDGKSQKSCRDFVVAIKKLNSLKPNQGN 1079

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356558657|ref|XP_003547620.1| PREDICTED: pentatricopeptide repeat-containing protein At5g55840-like [Glycine max]

 Score = 1308 bits (3384), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 629/1052 (59%), Positives = 798/1052 (75%), Gaps = 1/1052 (0%)

Query: 1    MEKSIYTLLTIDRWESLNHMEYKLASLRPVHGRLALKFLNWVMNQPGLELKHLTHILCLT 60
            MEKSIYT LT+ RWESLN M+Y+LASLRPVHGRLALKFLNWV+ QP LEL H+THI+C T
Sbjct: 1    MEKSIYTFLTVHRWESLNCMKYRLASLRPVHGRLALKFLNWVIKQPNLELNHVTHIICTT 60

Query: 61   THVLVKTRMYEDAKLILRQLAQMGIGQNSVFGSLMNTYPLCNSNPSVFDLLIRVYLREGM 120
            TH+LV+ RMY  AK  L+ L Q+ IG NSVFG+LM TYP+CNSNP+VFDLLIRV LR  M
Sbjct: 61   THILVRARMYNFAKTTLKHLLQLPIGLNSVFGALMETYPICNSNPAVFDLLIRVCLRNRM 120

Query: 121  VEYALETFQLMGFRGFNPSVYTCNMMLSFMLKDRRVDSVWLLFDDMLDRKICPNVATFNI 180
            V  A++TF LMGFRG NPSVYTCNM+L  ++K+++VD  W  F  ML + ICP+VATFNI
Sbjct: 121  VGDAVQTFYLMGFRGLNPSVYTCNMVLGSLVKEQKVDMFWSFFKGMLAKGICPDVATFNI 180

Query: 181  LINVSCVEGKLKKAGYLLRKMEESGYVPNIVTYNTLLNWYCKKGRYKAAFKLIDCMASKG 240
            L+N  C  GK K AG+LLRKMEESG  P  VTYNTLLNWYCKKGRYKAA +LIDCMASKG
Sbjct: 181  LLNALCERGKFKNAGFLLRKMEESGVYPTAVTYNTLLNWYCKKGRYKAASQLIDCMASKG 240

Query: 241  IEADVCTYNMFIDDLCRNNRSAKGYLLLKNMRKRMITPNEVTYNTLINGFVKEGKIQVAS 300
            I  DVCTYN+FID+LCR++RSAKGYLLLK MR+ M+ PNE+TYNTLI+GFV+EGKI+VA+
Sbjct: 241  IGVDVCTYNVFIDNLCRDSRSAKGYLLLKRMRRNMVYPNEITYNTLISGFVREGKIEVAT 300

Query: 301  RVFDEMSMLNFSPNSITYNELIDGHCCKGNFKEAFRLLAMMEEMGLRPNEVSYGALLNGF 360
            +VFDEMS+ N  PNSITYN LI GHC  GN  EA RL+ +M   GLRPNEV+YGALLNG 
Sbjct: 301  KVFDEMSLFNLLPNSITYNTLIAGHCTTGNIGEALRLMDVMVSHGLRPNEVTYGALLNGL 360

Query: 361  CKHAKFDLARSLLERMRTNGISISCIAYTSVIDGLCKCGLLDEAMQLFNKMFKDGLNPDL 420
             K+A+F +  S+LERMR  G+ +S I+YT++IDGLCK G+L+EA+QL + M K  +NPD+
Sbjct: 361  YKNAEFGMVSSILERMRMGGVRVSHISYTAMIDGLCKNGMLEEAVQLLDDMLKVSVNPDV 420

Query: 421  ITFSVLINGFCKVGMTRKAKAVLCKMYRDGLVPNKIIYSTLIYYFCKMGKVTEAMKVYAV 480
            +TFSVLINGF +VG    AK ++CKMY+ GLVPN I+YSTLIY +CKMG + EA+  YAV
Sbjct: 421  VTFSVLINGFFRVGKINNAKEIMCKMYKTGLVPNGILYSTLIYNYCKMGYLKEALNAYAV 480

Query: 481  MNRNAQGSDHFTCNMLVASLCKGGKVCEAEDYVGHMKRIGVVPNSITFDCMIDGYGTLGD 540
            MN +   +DHFTCN+LVA+ C+ GK+ EAE ++ HM R+G+ PNS+TFDC+I+GYG  GD
Sbjct: 481  MNHSGHVADHFTCNVLVATFCRYGKLEEAEYFMNHMSRMGLDPNSVTFDCIINGYGNSGD 540

Query: 541  GLKAFSMFDEMVKLGHHPSIFTYGSLLKGLCKGGNLKEAKRFLNSLHHIPSAVDTVAYNT 600
             LKAFS+FD+M   GH PS+FTYG LLKGLC GG++ EA +F + L  IP+AVD V +NT
Sbjct: 541  ALKAFSVFDKMNSFGHFPSLFTYGGLLKGLCIGGHINEALKFFHRLRCIPNAVDNVIFNT 600

Query: 601  ILAETCKSGNLWEAIVLLDEMVQFNLLPDRYTYTILLAGLCRKGKVVSALLFFEKVVSKR 660
             L  TC+SGNL +AI L++EMV  + LPD +TYT L+AGLC+KGK+V+ALL   K + K 
Sbjct: 601  KLTSTCRSGNLSDAIALINEMVTNDFLPDNFTYTNLIAGLCKKGKIVAALLLSGKAIEKG 660

Query: 661  TFSPNNVMFTCLVDGLFKAGQSKAAMHISKIMDKEGVYPDTIAFNAVMDGFSRMGNMMMA 720
              SPN  ++T LVDGL K G ++AA++I + M  + V PDT+AFN ++D +SR G     
Sbjct: 661  LLSPNPAVYTSLVDGLLKHGHARAALYIFEEMLNKDVEPDTVAFNVIIDQYSRKGKTSKV 720

Query: 721  NDLLSTMRSRKLCPSLATYNILLHGYSKKKDLLMCSMLLNTMKMEGLLPDKLTCHSLILG 780
            ND+LSTM+S+ LC +LATYNILLHGY+K+  +  C ML   M   G LPDK + HSLILG
Sbjct: 721  NDILSTMKSKNLCFNLATYNILLHGYAKRHAMARCFMLYKDMIRHGFLPDKFSWHSLILG 780

Query: 781  FCETGMLEVGFKFLKKMIAEGTMVDCFTFNVLMRKCCEAGEMGKAFDLFNIMNMLGVVPD 840
            +C++   +V  K L+ +  EG ++D FTFN+L+ K CE  EM KAF+L   MN   V+P+
Sbjct: 781  YCQSKSFDVAIKILRWITLEGHVIDRFTFNMLITKFCERNEMKKAFELVKQMNQFMVIPN 840

Query: 841  TNTQDAIIMGLKRIAAFQESHFVLRGMAEKGLTPKCTQYITLINGMCRVGNFQGAFKLKD 900
             +T +A+  GL R + F ++H VL+ + E G  P   QYITLINGMCRVGN +GA KL+D
Sbjct: 841  VDTYNALFNGLIRTSDFHKAHRVLQVLLESGSVPTNKQYITLINGMCRVGNIKGAMKLQD 900

Query: 901  EMEALGISSSDVAESAMVRGLAHCGKVEEAMLVLNRMLRMRLVPTIATFTTLIHKFCKEA 960
            EM+ LGISS +VA SA+VRGLA+  K+E A+ VL+ ML M+++PT+ATFTTL+H +CKEA
Sbjct: 901  EMKTLGISSHNVAMSAIVRGLANSKKIENAIWVLDLMLEMQIIPTVATFTTLMHVYCKEA 960

Query: 961  KFVDALKLKGTMELSGVKLDVVSYNVLISGLCANGDVMPAFELYEEMKHKGLCPNSTTYS 1020
                AL+L+  ME   VKLDVV+YNVLISGLCANGD+  AF+LYEEMK + L PN++ Y 
Sbjct: 961  NVAKALELRSIMEHCHVKLDVVAYNVLISGLCANGDIEAAFKLYEEMKQRDLWPNTSIYI 1020

Query: 1021 VLIDAISKKENNLVKGEILLKDIQERGFISWN 1052
            VLID+     N  ++ E LL+DIQ+R  +  N
Sbjct: 1021 VLIDSFCAG-NYQIESEKLLRDIQDRELMRLN 1051

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449489553|ref|XP_004158346.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing protein At5g55840-like [Cucumis sativus]

 Score = 1305 bits (3378), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 635/1080 (58%), Positives = 806/1080 (74%), Gaps = 1/1080 (0%)

Query: 1    MEKSIYTLLTIDRWESLNHMEYKLASLRPVHGRLALKFLNWVMNQPGLELKHLTHILCLT 60
            ME SIYT+LTI RWESLNHM YK ASLRP+HG LALKFL WV+ QPGLE  HLTHIL +T
Sbjct: 1    MENSIYTILTIGRWESLNHMNYKFASLRPIHGVLALKFLKWVIKQPGLEPNHLTHILGIT 60

Query: 61   THVLVKTRMYEDAKLILRQLAQMGIGQNSVFGSLMNTYPLCNSNPSVFDLLIRVYLREGM 120
            THVLV+ R+Y  AK IL+ LAQ   G N +FG LM+TYPLC+SNP+VFDLLIRVYLR+GM
Sbjct: 61   THVLVRARLYGYAKSILKHLAQKNSGSNFLFGVLMDTYPLCSSNPAVFDLLIRVYLRQGM 120

Query: 121  VEYALETFQLMGFRGFNPSVYTCNMMLSFMLKDRRVDSVWLLFDDMLDRKICPNVATFNI 180
            V +A+ TF  M  RGF PSVYTCNM+++ M+K+ R   VW  F  ML  ++CPNV++FNI
Sbjct: 121  VGHAVNTFSSMLIRGFKPSVYTCNMIMASMVKNCRAHLVWXFFKQMLTSRVCPNVSSFNI 180

Query: 181  LINVSCVEGKLKKAGYLLRKMEESGYVPNIVTYNTLLNWYCKKGRYKAAFKLIDCMASKG 240
            LI+V CV+GKLKKA  +L  ME +GYVP IV+YNTLL+W CKKGR+K A  LI  M  KG
Sbjct: 181  LISVLCVQGKLKKAVNILTMMERNGYVPTIVSYNTLLSWCCKKGRFKFALVLIHHMECKG 240

Query: 241  IEADVCTYNMFIDDLCRNNRSAKGYLLLKNMRKRMITPNEVTYNTLINGFVKEGKIQVAS 300
            I+ADVCTYNMFID LCRN+RSA+GYL+LK MR +MITPNEV+YNTLINGFVKEGKI VA+
Sbjct: 241  IQADVCTYNMFIDSLCRNSRSAQGYLVLKKMRNKMITPNEVSYNTLINGFVKEGKIGVAT 300

Query: 301  RVFDEMSMLNFSPNSITYNELIDGHCCKGNFKEAFRLLAMMEEMGLRPNEVSYGALLNGF 360
            RVF+EM  LN SPN ITYN LI+G+C  GNF+EA RLL +ME   +RPNEV+ G LLNG 
Sbjct: 301  RVFNEMIELNLSPNLITYNILINGYCINGNFEEALRLLDVMEANDVRPNEVTIGTLLNGL 360

Query: 361  CKHAKFDLARSLLERMRTNGISISCIAYTSVIDGLCKCGLLDEAMQLFNKMFKDGLNPDL 420
             K AKFD+AR++LER   N  S++CI++T +IDGLC+ GLLDEA QL  +M KDG+ PD+
Sbjct: 361  YKSAKFDVARNILERYSINRTSLNCISHTVMIDGLCRNGLLDEAFQLLIEMCKDGVYPDI 420

Query: 421  ITFSVLINGFCKVGMTRKAKAVLCKMYRDGLVPNKIIYSTLIYYFCKMGKVTEAMKVYAV 480
            ITFSVLINGFCKVG   KAK V+ K+YR+G VPN +I+STLIY  CK+G V E MK YA 
Sbjct: 421  ITFSVLINGFCKVGNLNKAKEVMSKIYREGFVPNNVIFSTLIYNSCKVGNVYEGMKFYAA 480

Query: 481  MNRNAQGSDHFTCNMLVASLCKGGKVCEAEDYVGHMKRIGVVPNSITFDCMIDGYGTLGD 540
            MN N Q +D+FTCN LVASLC+ GK+ EAE+++ H+ RIG+VPNS+TFDC+I+GY  +GD
Sbjct: 481  MNLNGQNADNFTCNSLVASLCENGKLVEAEEFLHHISRIGLVPNSVTFDCIINGYANVGD 540

Query: 541  GLKAFSMFDEMVKLGHHPSIFTYGSLLKGLCKGGNLKEAKRFLNSLHHIPSAVDTVAYNT 600
            G  AFS+FD+M+  GHHPS FTYGSLLK LCKG N  EA++ L  LH IP AVDT++YNT
Sbjct: 541  GSGAFSVFDKMISCGHHPSPFTYGSLLKVLCKGQNFWEARKLLKKLHCIPLAVDTISYNT 600

Query: 601  ILAETCKSGNLWEAIVLLDEMVQFNLLPDRYTYTILLAGLCRKGKVVSALLFFEKVVSKR 660
            ++ E  KSGNL EA+ L +EM+Q N+LPD YTYT +L+GL R+G++V A +F  +++ K 
Sbjct: 601  LIVEISKSGNLLEAVRLFEEMIQNNILPDSYTYTCILSGLIREGRLVCAFIFLGRLMQKE 660

Query: 661  TFSPNNVMFTCLVDGLFKAGQSKAAMHISKIMDKEGVYPDTIAFNAVMDGFSRMGNMMMA 720
              + N++++TC +DGLFKAGQSKAA+++ K M+++G+  D IA N++ DG+SRMG +  A
Sbjct: 661  ILTLNSIVYTCFIDGLFKAGQSKAALYLFKEMEEKGLSLDLIALNSITDGYSRMGKVFSA 720

Query: 721  NDLLSTMRSRKLCPSLATYNILLHGYSKKKDLLMCSMLLNTMKMEGLLPDKLTCHSLILG 780
            + L+S  R++ + P+L T+NILLHGYS+ +D++ C  L N M+  G  P++LT HSLILG
Sbjct: 721  SSLISKTRNKNVIPNLTTFNILLHGYSRGQDIMSCFKLYNLMRRSGFFPNRLTYHSLILG 780

Query: 781  FCETGMLEVGFKFLKKMIAEGTMVDCFTFNVLMRKCCEAGEMGKAFDLFNIMNMLGVVPD 840
             C  GMLE+G K LK  IAE + +D  TFN+L+RKCCE  ++ K  DL + M +  V  D
Sbjct: 781  LCNHGMLELGIKMLKMFIAESSTIDDLTFNMLIRKCCEINDLDKVIDLTHNMEVFRVSLD 840

Query: 841  TNTQDAIIMGLKRIAAFQESHFVLRGMAEKGLTPKCTQYITLINGMCRVGNFQGAFKLKD 900
             +TQ A+   L R    Q     +  M +KG  P   QY T++  MCRVG+ QGAFKLKD
Sbjct: 841  KDTQKAVTDVLVRRMVSQNYFVFMHEMLKKGFIPTSKQYCTMMKRMCRVGDIQGAFKLKD 900

Query: 901  EMEALGISSSDVAESAMVRGLAHCGKVEEAMLVLNRMLRMRLVPTIATFTTLIHKFCKEA 960
            +M ALGIS  D AE AMVRGLA CGK+EEAM +L RMLRM+ +PT +TFTTL+H FCK+ 
Sbjct: 901  QMVALGISLDDAAECAMVRGLALCGKIEEAMWILQRMLRMKKIPTTSTFTTLMHVFCKKD 960

Query: 961  KFVDALKLKGTMELSGVKLDVVSYNVLISGLCANGDVMPAFELYEEMKHKGLCPNSTTYS 1020
             F +A  LK  ME   VKLD+V+YNVLIS  CANGDV+ A + YEE+K KGL PN TTY 
Sbjct: 961  NFKEAHNLKILMEHYRVKLDIVAYNVLISACCANGDVITALDFYEEIKQKGLLPNMTTYR 1020

Query: 1021 VLIDAISKKENNLVKGEILLKDIQERGFISWNWDGSTQHLHEGLINALRKLKSFKKNRRN 1080
            VL+ AIS K + + +GEI+LKD+ +RG +S   DG +Q      + A++KL S K N+ N
Sbjct: 1021 VLVSAISTK-HYVSRGEIVLKDLNDRGLVSGYLDGKSQKSCRDFVVAIKKLNSLKPNQGN 1079

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|334188438|ref|NP_200395.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] gi|332009303|gb|AED96686.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]

 Score = 1289 bits (3336), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 617/1080 (57%), Positives = 802/1080 (74%), Gaps = 2/1080 (0%)

Query: 1    MEKSIYTLLTIDRWESLNHMEYKLASLRPVHGRLALKFLNWVMNQPGLELKHLTHILCLT 60
            MEKSIY +LTIDRW SLNHM+Y+ A LR VHG+LALKFL WV+ QPGLE  H+  ++C+T
Sbjct: 59   MEKSIYNILTIDRWGSLNHMDYRQARLRLVHGKLALKFLKWVVKQPGLETDHIVQLVCIT 118

Query: 61   THVLVKTRMYEDAKLILRQLAQMGIGQNSVFGSLMNTYPLCNSNPSVFDLLIRVYLREGM 120
            TH+LV+ RMY+ A+ IL++L+ M    + VFG+LM TY LCNSNPSV+D+LIRVYLREGM
Sbjct: 119  THILVRARMYDPARHILKELSLMSGKSSFVFGALMTTYRLCNSNPSVYDILIRVYLREGM 178

Query: 121  VEYALETFQLMGFRGFNPSVYTCNMMLSFMLKDRRVDSVWLLFDDMLDRKICPNVATFNI 180
            ++ +LE F+LMG  GFNPSVYTCN +L  ++K     SVW    +ML RKICP+VATFNI
Sbjct: 179  IQDSLEIFRLMGLYGFNPSVYTCNAILGSVVKSGEDVSVWSFLKEMLKRKICPDVATFNI 238

Query: 181  LINVSCVEGKLKKAGYLLRKMEESGYVPNIVTYNTLLNWYCKKGRYKAAFKLIDCMASKG 240
            LINV C EG  +K+ YL++KME+SGY P IVTYNT+L+WYCKKGR+KAA +L+D M SKG
Sbjct: 239  LINVLCAEGSFEKSSYLMQKMEKSGYAPTIVTYNTVLHWYCKKGRFKAAIELLDHMKSKG 298

Query: 241  IEADVCTYNMFIDDLCRNNRSAKGYLLLKNMRKRMITPNEVTYNTLINGFVKEGKIQVAS 300
            ++ADVCTYNM I DLCR+NR AKGYLLL++MRKRMI PNEVTYNTLINGF  EGK+ +AS
Sbjct: 299  VDADVCTYNMLIHDLCRSNRIAKGYLLLRDMRKRMIHPNEVTYNTLINGFSNEGKVLIAS 358

Query: 301  RVFDEMSMLNFSPNSITYNELIDGHCCKGNFKEAFRLLAMMEEMGLRPNEVSYGALLNGF 360
            ++ +EM     SPN +T+N LIDGH  +GNFKEA ++  MME  GL P+EVSYG LL+G 
Sbjct: 359  QLLNEMLSFGLSPNHVTFNALIDGHISEGNFKEALKMFYMMEAKGLTPSEVSYGVLLDGL 418

Query: 361  CKHAKFDLARSLLERMRTNGISISCIAYTSVIDGLCKCGLLDEAMQLFNKMFKDGLNPDL 420
            CK+A+FDLAR    RM+ NG+ +  I YT +IDGLCK G LDEA+ L N+M KDG++PD+
Sbjct: 419  CKNAEFDLARGFYMRMKRNGVCVGRITYTGMIDGLCKNGFLDEAVVLLNEMSKDGIDPDI 478

Query: 421  ITFSVLINGFCKVGMTRKAKAVLCKMYRDGLVPNKIIYSTLIYYFCKMGKVTEAMKVYAV 480
            +T+S LINGFCKVG  + AK ++C++YR GL PN IIYSTLIY  C+MG + EA+++Y  
Sbjct: 479  VTYSALINGFCKVGRFKTAKEIVCRIYRVGLSPNGIIYSTLIYNCCRMGCLKEAIRIYEA 538

Query: 481  MNRNAQGSDHFTCNMLVASLCKGGKVCEAEDYVGHMKRIGVVPNSITFDCMIDGYGTLGD 540
            M       DHFT N+LV SLCK GKV EAE+++  M   G++PN+++FDC+I+GYG  G+
Sbjct: 539  MILEGHTRDHFTFNVLVTSLCKAGKVAEAEEFMRCMTSDGILPNTVSFDCLINGYGNSGE 598

Query: 541  GLKAFSMFDEMVKLGHHPSIFTYGSLLKGLCKGGNLKEAKRFLNSLHHIPSAVDTVAYNT 600
            GLKAFS+FDEM K+GHHP+ FTYGSLLKGLCKGG+L+EA++FL SLH +P+AVDTV YNT
Sbjct: 599  GLKAFSVFDEMTKVGHHPTFFTYGSLLKGLCKGGHLREAEKFLKSLHAVPAAVDTVMYNT 658

Query: 601  ILAETCKSGNLWEAIVLLDEMVQFNLLPDRYTYTILLAGLCRKGKVVSALLFFEKVVSKR 660
            +L   CKSGNL +A+ L  EMVQ ++LPD YTYT L++GLCRKGK V A+LF ++  ++ 
Sbjct: 659  LLTAMCKSGNLAKAVSLFGEMVQRSILPDSYTYTSLISGLCRKGKTVIAILFAKEAEARG 718

Query: 661  TFSPNNVMFTCLVDGLFKAGQSKAAMHISKIMDKEGVYPDTIAFNAVMDGFSRMGNMMMA 720
               PN VM+TC VDG+FKAGQ KA ++  + MD  G  PD +  NA++DG+SRMG +   
Sbjct: 719  NVLPNKVMYTCFVDGMFKAGQWKAGIYFREQMDNLGHTPDIVTTNAMIDGYSRMGKIEKT 778

Query: 721  NDLLSTMRSRKLCPSLATYNILLHGYSKKKDLLMCSMLLNTMKMEGLLPDKLTCHSLILG 780
            NDLL  M ++   P+L TYNILLHGYSK+KD+    +L  ++ + G+LPDKLTCHSL+LG
Sbjct: 779  NDLLPEMGNQNGGPNLTTYNILLHGYSKRKDVSTSFLLYRSIILNGILPDKLTCHSLVLG 838

Query: 781  FCETGMLEVGFKFLKKMIAEGTMVDCFTFNVLMRKCCEAGEMGKAFDLFNIMNMLGVVPD 840
             CE+ MLE+G K LK  I  G  VD +TFN+L+ KCC  GE+  AFDL  +M  LG+  D
Sbjct: 839  ICESNMLEIGLKILKAFICRGVEVDRYTFNMLISKCCANGEINWAFDLVKVMTSLGISLD 898

Query: 841  TNTQDAIIMGLKRIAAFQESHFVLRGMAEKGLTPKCTQYITLINGMCRVGNFQGAFKLKD 900
             +T DA++  L R   FQES  VL  M+++G++P+  +YI LING+CRVG+ + AF +K+
Sbjct: 899  KDTCDAMVSVLNRNHRFQESRMVLHEMSKQGISPESRKYIGLINGLCRVGDIKTAFVVKE 958

Query: 901  EMEALGISSSDVAESAMVRGLAHCGKVEEAMLVLNRMLRMRLVPTIATFTTLIHKFCKEA 960
            EM A  I   +VAESAMVR LA CGK +EA L+L  ML+M+LVPTIA+FTTL+H  CK  
Sbjct: 959  EMIAHKICPPNVAESAMVRALAKCGKADEATLLLRFMLKMKLVPTIASFTTLMHLCCKNG 1018

Query: 961  KFVDALKLKGTMELSGVKLDVVSYNVLISGLCANGDVMPAFELYEEMKHKGLCPNSTTYS 1020
              ++AL+L+  M   G+KLD+VSYNVLI+GLCA GD+  AFELYEEMK  G   N+TTY 
Sbjct: 1019 NVIEALELRVVMSNCGLKLDLVSYNVLITGLCAKGDMALAFELYEEMKGDGFLANATTYK 1078

Query: 1021 VLIDAISKKENNLVKGEILLKDIQERGFISWNWDGSTQHLHEGLINALRKLKSFKKNRRN 1080
             LI  +  +E      +I+LKD+  RGFI+      +Q  H  L  A+ KLK+ + N+++
Sbjct: 1079 ALIRGLLARETAFSGADIILKDLLARGFITSM--SLSQDSHRNLKMAMEKLKALQSNKKD 1136

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|223635748|sp|Q9LVQ5.2|PP432_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g55840

 Score = 1288 bits (3334), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 617/1080 (57%), Positives = 802/1080 (74%), Gaps = 2/1080 (0%)

Query: 1    MEKSIYTLLTIDRWESLNHMEYKLASLRPVHGRLALKFLNWVMNQPGLELKHLTHILCLT 60
            MEKSIY +LTIDRW SLNHM+Y+ A LR VHG+LALKFL WV+ QPGLE  H+  ++C+T
Sbjct: 19   MEKSIYNILTIDRWGSLNHMDYRQARLRLVHGKLALKFLKWVVKQPGLETDHIVQLVCIT 78

Query: 61   THVLVKTRMYEDAKLILRQLAQMGIGQNSVFGSLMNTYPLCNSNPSVFDLLIRVYLREGM 120
            TH+LV+ RMY+ A+ IL++L+ M    + VFG+LM TY LCNSNPSV+D+LIRVYLREGM
Sbjct: 79   THILVRARMYDPARHILKELSLMSGKSSFVFGALMTTYRLCNSNPSVYDILIRVYLREGM 138

Query: 121  VEYALETFQLMGFRGFNPSVYTCNMMLSFMLKDRRVDSVWLLFDDMLDRKICPNVATFNI 180
            ++ +LE F+LMG  GFNPSVYTCN +L  ++K     SVW    +ML RKICP+VATFNI
Sbjct: 139  IQDSLEIFRLMGLYGFNPSVYTCNAILGSVVKSGEDVSVWSFLKEMLKRKICPDVATFNI 198

Query: 181  LINVSCVEGKLKKAGYLLRKMEESGYVPNIVTYNTLLNWYCKKGRYKAAFKLIDCMASKG 240
            LINV C EG  +K+ YL++KME+SGY P IVTYNT+L+WYCKKGR+KAA +L+D M SKG
Sbjct: 199  LINVLCAEGSFEKSSYLMQKMEKSGYAPTIVTYNTVLHWYCKKGRFKAAIELLDHMKSKG 258

Query: 241  IEADVCTYNMFIDDLCRNNRSAKGYLLLKNMRKRMITPNEVTYNTLINGFVKEGKIQVAS 300
            ++ADVCTYNM I DLCR+NR AKGYLLL++MRKRMI PNEVTYNTLINGF  EGK+ +AS
Sbjct: 259  VDADVCTYNMLIHDLCRSNRIAKGYLLLRDMRKRMIHPNEVTYNTLINGFSNEGKVLIAS 318

Query: 301  RVFDEMSMLNFSPNSITYNELIDGHCCKGNFKEAFRLLAMMEEMGLRPNEVSYGALLNGF 360
            ++ +EM     SPN +T+N LIDGH  +GNFKEA ++  MME  GL P+EVSYG LL+G 
Sbjct: 319  QLLNEMLSFGLSPNHVTFNALIDGHISEGNFKEALKMFYMMEAKGLTPSEVSYGVLLDGL 378

Query: 361  CKHAKFDLARSLLERMRTNGISISCIAYTSVIDGLCKCGLLDEAMQLFNKMFKDGLNPDL 420
            CK+A+FDLAR    RM+ NG+ +  I YT +IDGLCK G LDEA+ L N+M KDG++PD+
Sbjct: 379  CKNAEFDLARGFYMRMKRNGVCVGRITYTGMIDGLCKNGFLDEAVVLLNEMSKDGIDPDI 438

Query: 421  ITFSVLINGFCKVGMTRKAKAVLCKMYRDGLVPNKIIYSTLIYYFCKMGKVTEAMKVYAV 480
            +T+S LINGFCKVG  + AK ++C++YR GL PN IIYSTLIY  C+MG + EA+++Y  
Sbjct: 439  VTYSALINGFCKVGRFKTAKEIVCRIYRVGLSPNGIIYSTLIYNCCRMGCLKEAIRIYEA 498

Query: 481  MNRNAQGSDHFTCNMLVASLCKGGKVCEAEDYVGHMKRIGVVPNSITFDCMIDGYGTLGD 540
            M       DHFT N+LV SLCK GKV EAE+++  M   G++PN+++FDC+I+GYG  G+
Sbjct: 499  MILEGHTRDHFTFNVLVTSLCKAGKVAEAEEFMRCMTSDGILPNTVSFDCLINGYGNSGE 558

Query: 541  GLKAFSMFDEMVKLGHHPSIFTYGSLLKGLCKGGNLKEAKRFLNSLHHIPSAVDTVAYNT 600
            GLKAFS+FDEM K+GHHP+ FTYGSLLKGLCKGG+L+EA++FL SLH +P+AVDTV YNT
Sbjct: 559  GLKAFSVFDEMTKVGHHPTFFTYGSLLKGLCKGGHLREAEKFLKSLHAVPAAVDTVMYNT 618

Query: 601  ILAETCKSGNLWEAIVLLDEMVQFNLLPDRYTYTILLAGLCRKGKVVSALLFFEKVVSKR 660
            +L   CKSGNL +A+ L  EMVQ ++LPD YTYT L++GLCRKGK V A+LF ++  ++ 
Sbjct: 619  LLTAMCKSGNLAKAVSLFGEMVQRSILPDSYTYTSLISGLCRKGKTVIAILFAKEAEARG 678

Query: 661  TFSPNNVMFTCLVDGLFKAGQSKAAMHISKIMDKEGVYPDTIAFNAVMDGFSRMGNMMMA 720
               PN VM+TC VDG+FKAGQ KA ++  + MD  G  PD +  NA++DG+SRMG +   
Sbjct: 679  NVLPNKVMYTCFVDGMFKAGQWKAGIYFREQMDNLGHTPDIVTTNAMIDGYSRMGKIEKT 738

Query: 721  NDLLSTMRSRKLCPSLATYNILLHGYSKKKDLLMCSMLLNTMKMEGLLPDKLTCHSLILG 780
            NDLL  M ++   P+L TYNILLHGYSK+KD+    +L  ++ + G+LPDKLTCHSL+LG
Sbjct: 739  NDLLPEMGNQNGGPNLTTYNILLHGYSKRKDVSTSFLLYRSIILNGILPDKLTCHSLVLG 798

Query: 781  FCETGMLEVGFKFLKKMIAEGTMVDCFTFNVLMRKCCEAGEMGKAFDLFNIMNMLGVVPD 840
             CE+ MLE+G K LK  I  G  VD +TFN+L+ KCC  GE+  AFDL  +M  LG+  D
Sbjct: 799  ICESNMLEIGLKILKAFICRGVEVDRYTFNMLISKCCANGEINWAFDLVKVMTSLGISLD 858

Query: 841  TNTQDAIIMGLKRIAAFQESHFVLRGMAEKGLTPKCTQYITLINGMCRVGNFQGAFKLKD 900
             +T DA++  L R   FQES  VL  M+++G++P+  +YI LING+CRVG+ + AF +K+
Sbjct: 859  KDTCDAMVSVLNRNHRFQESRMVLHEMSKQGISPESRKYIGLINGLCRVGDIKTAFVVKE 918

Query: 901  EMEALGISSSDVAESAMVRGLAHCGKVEEAMLVLNRMLRMRLVPTIATFTTLIHKFCKEA 960
            EM A  I   +VAESAMVR LA CGK +EA L+L  ML+M+LVPTIA+FTTL+H  CK  
Sbjct: 919  EMIAHKICPPNVAESAMVRALAKCGKADEATLLLRFMLKMKLVPTIASFTTLMHLCCKNG 978

Query: 961  KFVDALKLKGTMELSGVKLDVVSYNVLISGLCANGDVMPAFELYEEMKHKGLCPNSTTYS 1020
              ++AL+L+  M   G+KLD+VSYNVLI+GLCA GD+  AFELYEEMK  G   N+TTY 
Sbjct: 979  NVIEALELRVVMSNCGLKLDLVSYNVLITGLCAKGDMALAFELYEEMKGDGFLANATTYK 1038

Query: 1021 VLIDAISKKENNLVKGEILLKDIQERGFISWNWDGSTQHLHEGLINALRKLKSFKKNRRN 1080
             LI  +  +E      +I+LKD+  RGFI+      +Q  H  L  A+ KLK+ + N+++
Sbjct: 1039 ALIRGLLARETAFSGADIILKDLLARGFITSM--SLSQDSHRNLKMAMEKLKALQSNKKD 1096

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|8843735|dbj|BAA97283.1| unnamed protein product [Arabidopsis thaliana]

 Score = 1287 bits (3330), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 632/1143 (55%), Positives = 823/1143 (72%), Gaps = 20/1143 (1%)

Query: 1    MEKSIYTLLTIDRWESLNHMEYKLASLRPVHGRLALKFLNWVMNQPGLELKHLTHILCLT 60
            MEKSIY +LTIDRW SLNHM+Y+ A LR VHG+LALKFL WV+ QPGLE  H+  ++C+T
Sbjct: 19   MEKSIYNILTIDRWGSLNHMDYRQARLRLVHGKLALKFLKWVVKQPGLETDHIVQLVCIT 78

Query: 61   THVLVKTRMYEDAKLILRQLAQMGIGQNSVFGSLMNTYPLCNSNPSVFDLLIRVYLREGM 120
            TH+LV+ RMY+ A+ IL++L+ M    + VFG+LM TY LCNSNPSV+D+LIRVYLREGM
Sbjct: 79   THILVRARMYDPARHILKELSLMSGKSSFVFGALMTTYRLCNSNPSVYDILIRVYLREGM 138

Query: 121  VEYALETFQLMGFRGFNPSVYTCNMMLSFMLKDRRVDSVWLLFDDMLDRKICPNVATFNI 180
            ++ +LE F+LMG  GFNPSVYTCN +L  ++K     SVW    +ML RKICP+VATFNI
Sbjct: 139  IQDSLEIFRLMGLYGFNPSVYTCNAILGSVVKSGEDVSVWSFLKEMLKRKICPDVATFNI 198

Query: 181  LINVSCVEGKLKKAGYLLRKMEESGYVPNIVTYNTLLNWYCKKGRYKAAFKLIDCMASKG 240
            LINV C EG  +K+ YL++KME+SGY P IVTYNT+L+WYCKKGR+KAA +L+D M SKG
Sbjct: 199  LINVLCAEGSFEKSSYLMQKMEKSGYAPTIVTYNTVLHWYCKKGRFKAAIELLDHMKSKG 258

Query: 241  IEADVCTYNMFIDDLCRNNRSAKGYLLLKNMRKRMITPNEVTYNTLINGFVKEGKIQVAS 300
            ++ADVCTYNM I DLCR+NR AKGYLLL++MRKRMI PNEVTYNTLINGF  EGK+ +AS
Sbjct: 259  VDADVCTYNMLIHDLCRSNRIAKGYLLLRDMRKRMIHPNEVTYNTLINGFSNEGKVLIAS 318

Query: 301  RVFDEMSMLNFSPNSITYNELIDGHCCKGNFKEAFRLLAMMEEMGLRPNEVSYGALLNGF 360
            ++ +EM     SPN +T+N LIDGH  +GNFKEA ++  MME  GL P+EVSYG LL+G 
Sbjct: 319  QLLNEMLSFGLSPNHVTFNALIDGHISEGNFKEALKMFYMMEAKGLTPSEVSYGVLLDGL 378

Query: 361  CKHAKFDLARSLLERMRTNGISISCIAYTSVIDGLCKCGLLDEAMQLFNKMFKDGLNPDL 420
            CK+A+FDLAR    RM+ NG+ +  I YT +IDGLCK G LDEA+ L N+M KDG++PD+
Sbjct: 379  CKNAEFDLARGFYMRMKRNGVCVGRITYTGMIDGLCKNGFLDEAVVLLNEMSKDGIDPDI 438

Query: 421  ITFSVLINGFCKVGMTRKAKAVLCKMYRDGLVPNKIIYSTLIYYFCKMGKVTEAMKVYAV 480
            +T+S LINGFCKVG  + AK ++C++YR GL PN IIYSTLIY  C+MG + EA+++Y  
Sbjct: 439  VTYSALINGFCKVGRFKTAKEIVCRIYRVGLSPNGIIYSTLIYNCCRMGCLKEAIRIYEA 498

Query: 481  MNRNAQGSDHFTCNMLVASLCKGGKVCEAEDYVGHMKRIGVVPNSITFDCMIDGYGTLGD 540
            M       DHFT N+LV SLCK GKV EAE+++  M   G++PN+++FDC+I+GYG  G+
Sbjct: 499  MILEGHTRDHFTFNVLVTSLCKAGKVAEAEEFMRCMTSDGILPNTVSFDCLINGYGNSGE 558

Query: 541  GLKAFSMFDEMVKLGHHPSIFTYGSLLKGLCKGGNLKEAKRFLNSLHHIPSAVDTVAYNT 600
            GLKAFS+FDEM K+GHHP+ FTYGSLLKGLCKGG+L+EA++FL SLH +P+AVDTV YNT
Sbjct: 559  GLKAFSVFDEMTKVGHHPTFFTYGSLLKGLCKGGHLREAEKFLKSLHAVPAAVDTVMYNT 618

Query: 601  ILAETCKSGNLWEAIVLLDEMVQFNLLPDRYTYTILLAGLCRKGKVVSALLFFEKVVSKR 660
            +L   CKSGNL +A+ L  EMVQ ++LPD YTYT L++GLCRKGK V A+LF ++  ++ 
Sbjct: 619  LLTAMCKSGNLAKAVSLFGEMVQRSILPDSYTYTSLISGLCRKGKTVIAILFAKEAEARG 678

Query: 661  TFSPNNVMFTCLVDGLFKAGQSKAAMHISKIMDKEGVYPDTIAFNAVMDGFSRMGNMMMA 720
               PN VM+TC VDG+FKAGQ KA ++  + MD  G  PD +  NA++DG+SRMG +   
Sbjct: 679  NVLPNKVMYTCFVDGMFKAGQWKAGIYFREQMDNLGHTPDIVTTNAMIDGYSRMGKIEKT 738

Query: 721  NDLLSTMRSRKLCPSLATYNILLHGYSKKKDLLMCSMLLNTMKMEGLLPDKLTCHSLILG 780
            NDLL  M ++   P+L TYNILLHGYSK+KD+    +L  ++ + G+LPDKLTCHSL+LG
Sbjct: 739  NDLLPEMGNQNGGPNLTTYNILLHGYSKRKDVSTSFLLYRSIILNGILPDKLTCHSLVLG 798

Query: 781  FCETGMLEVGFKFLKKMIAEGTMVDCFTFNVLMRKCCEAGEMGKAFDLFNIMNMLGVVPD 840
             CE+ MLE+G K LK  I  G  VD +TFN+L+ KCC  GE+  AFDL  +M  LG+  D
Sbjct: 799  ICESNMLEIGLKILKAFICRGVEVDRYTFNMLISKCCANGEINWAFDLVKVMTSLGISLD 858

Query: 841  TNTQDAIIMGLKRIAAFQESHFVLRGMAEKGLTPKCTQYITLINGMCRVGNFQGAFKLKD 900
             +T DA++  L R   FQES  VL  M+++G++P+  +YI LING+CRVG+ + AF +K+
Sbjct: 859  KDTCDAMVSVLNRNHRFQESRMVLHEMSKQGISPESRKYIGLINGLCRVGDIKTAFVVKE 918

Query: 901  EMEALGISSSDVAESAMVRGLAHCGKVEEAMLVLNRMLRMRLVPTIATFTTLIHKFCKEA 960
            EM A  I   +VAESAMVR LA CGK +EA L+L  ML+M+LVPTIA+FTTL+H  CK  
Sbjct: 919  EMIAHKICPPNVAESAMVRALAKCGKADEATLLLRFMLKMKLVPTIASFTTLMHLCCKNG 978

Query: 961  KFVDALKLKGTMELSGVKLDVVSYNVLISGLCANGDVMPAFELYEEMKHKGLCPNSTTYS 1020
              ++AL+L+  M   G+KLD+VSYNVLI+GLCA GD+  AFELYEEMK  G   N+TTY 
Sbjct: 979  NVIEALELRVVMSNCGLKLDLVSYNVLITGLCAKGDMALAFELYEEMKGDGFLANATTYK 1038

Query: 1021 VLIDAISKKENNLVKGEILLKDIQERGFISWNWDGSTQHLHEGLINALRKLKSFKKNRRN 1080
             LI  +  +E      +I+LKD+  RGFI+      +Q  H  L  A+ KLK+ + +   
Sbjct: 1039 ALIRGLLARETAFSGADIILKDLLARGFITSM--SLSQDSHRNLKMAMEKLKALQND--- 1093

Query: 1081 NAKIDPTFMEALPEDLLAEVLASQQ----------ASSIAQGLAHHGEGQPVDMDNASVI 1130
               I     E L  DL + VL+  Q           SS +  L  + E    D + A+++
Sbjct: 1094 ---IAVCHREEL--DLQSNVLSKNQLKLFELCLIHISSRSLSLYCYTEQDKQDSEGATLL 1148

Query: 1131 ATF 1133
            A F
Sbjct: 1149 APF 1151

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297793055|ref|XP_002864412.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297310247|gb|EFH40671.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata]

 Score = 1253 bits (3242), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 599/1050 (57%), Positives = 777/1050 (74%)

Query: 1    MEKSIYTLLTIDRWESLNHMEYKLASLRPVHGRLALKFLNWVMNQPGLELKHLTHILCLT 60
            MEKSIY +LTIDRW SLNHM+Y+ A LRPVHG+LALKFL WV+ QPGL+  H+  + C+T
Sbjct: 19   MEKSIYNILTIDRWGSLNHMDYRQARLRPVHGKLALKFLKWVVKQPGLDTDHIVQLFCIT 78

Query: 61   THVLVKTRMYEDAKLILRQLAQMGIGQNSVFGSLMNTYPLCNSNPSVFDLLIRVYLREGM 120
            TH+LV+ RMY+ A+ IL++L+ M    + VFG+LM TY LCNSNPSVFD+LIRVYLREGM
Sbjct: 79   THILVRARMYDPARHILKELSLMSGKSSFVFGALMATYRLCNSNPSVFDILIRVYLREGM 138

Query: 121  VEYALETFQLMGFRGFNPSVYTCNMMLSFMLKDRRVDSVWLLFDDMLDRKICPNVATFNI 180
            ++ +LE F+LMG  GFNPSVYTCN +L  ++K     SVW    +ML RKICP+VATFNI
Sbjct: 139  IQDSLEIFRLMGLYGFNPSVYTCNAILGSIVKSCEDVSVWSFLKEMLKRKICPDVATFNI 198

Query: 181  LINVSCVEGKLKKAGYLLRKMEESGYVPNIVTYNTLLNWYCKKGRYKAAFKLIDCMASKG 240
            LINV C EG  KK+ YL++KME+SGY P IVTYNT+L+WYCKKGR+KAA +L+D M  KG
Sbjct: 199  LINVLCAEGSFKKSSYLMQKMEKSGYAPTIVTYNTVLHWYCKKGRFKAAIELLDHMNLKG 258

Query: 241  IEADVCTYNMFIDDLCRNNRSAKGYLLLKNMRKRMITPNEVTYNTLINGFVKEGKIQVAS 300
            + ADVCTYNM I DLCR+NRSAKGYLLL++MRKRMI PNEVTYNTL+NGF  EGK+ +A 
Sbjct: 259  VNADVCTYNMLIHDLCRSNRSAKGYLLLRDMRKRMIHPNEVTYNTLLNGFSNEGKVLIAR 318

Query: 301  RVFDEMSMLNFSPNSITYNELIDGHCCKGNFKEAFRLLAMMEEMGLRPNEVSYGALLNGF 360
            ++ +EM     SPN +T+N LIDGH  +GNFKEA ++  MME  GL   EVSYG LL+G 
Sbjct: 319  QLLNEMLTFGLSPNHVTFNALIDGHISEGNFKEALKMFHMMEAKGLIGTEVSYGVLLDGL 378

Query: 361  CKHAKFDLARSLLERMRTNGISISCIAYTSVIDGLCKCGLLDEAMQLFNKMFKDGLNPDL 420
            CK+A+FDLAR    RM+ NG+ +  I YT +IDGLCK G LDEA+ + N+M KDG++PD+
Sbjct: 379  CKNAEFDLARGFYMRMKRNGVCVGRITYTGMIDGLCKNGFLDEAVVMLNEMSKDGIDPDI 438

Query: 421  ITFSVLINGFCKVGMTRKAKAVLCKMYRDGLVPNKIIYSTLIYYFCKMGKVTEAMKVYAV 480
            +T+S LINGFC+VG  + AK ++C++YR GL PN IIYSTLIY  C+MG + E +++Y  
Sbjct: 439  VTYSALINGFCRVGRLKTAKEIVCRIYRVGLSPNGIIYSTLIYNCCRMGCLKETIRIYEA 498

Query: 481  MNRNAQGSDHFTCNMLVASLCKGGKVCEAEDYVGHMKRIGVVPNSITFDCMIDGYGTLGD 540
            M       DHFT N+LV SLCK GKV EAE+++  M   G++PN+++FDC+I+GYG+ G+
Sbjct: 499  MILEGNTPDHFTFNVLVTSLCKAGKVAEAEEFMRCMTSDGILPNAVSFDCLINGYGSSGE 558

Query: 541  GLKAFSMFDEMVKLGHHPSIFTYGSLLKGLCKGGNLKEAKRFLNSLHHIPSAVDTVAYNT 600
            GLKAFS+FDEM K+GHHP+ FTYGSLLKGLCKGG+L  A++FL SL ++P+AVDTV  NT
Sbjct: 559  GLKAFSVFDEMTKVGHHPTFFTYGSLLKGLCKGGHLIAAEKFLKSLQNVPAAVDTVMCNT 618

Query: 601  ILAETCKSGNLWEAIVLLDEMVQFNLLPDRYTYTILLAGLCRKGKVVSALLFFEKVVSKR 660
            ++   CKSGNL +A+ L  EMVQ ++LPD +TYT L++GLCRKGK V A+LF ++  ++ 
Sbjct: 619  LITAMCKSGNLDKAVSLFGEMVQRSILPDSFTYTSLISGLCRKGKTVIAILFAKEAEARG 678

Query: 661  TFSPNNVMFTCLVDGLFKAGQSKAAMHISKIMDKEGVYPDTIAFNAVMDGFSRMGNMMMA 720
               PN VM+TC VDG+FKAGQ KA  +  + MDK G+  D +  NA++DG+SRMG +   
Sbjct: 679  NLVPNKVMYTCFVDGMFKAGQWKAGFYFRQQMDKLGLTRDVVTTNAMIDGYSRMGKIEKT 738

Query: 721  NDLLSTMRSRKLCPSLATYNILLHGYSKKKDLLMCSMLLNTMKMEGLLPDKLTCHSLILG 780
            +DLL  M ++   P+L TYNILLHGYSK+K +    ML  +M + G+LPDKLTC+S+ILG
Sbjct: 739  HDLLFEMGNQNQGPNLTTYNILLHGYSKRKHVSTSFMLYRSMILSGILPDKLTCYSIILG 798

Query: 781  FCETGMLEVGFKFLKKMIAEGTMVDCFTFNVLMRKCCEAGEMGKAFDLFNIMNMLGVVPD 840
             CE+ MLE+G K LK  I  G  VD  TFN+L+ KCC  GE+  AFD+ N+M  LG+  D
Sbjct: 799  ICESNMLEIGLKILKAFICRGVEVDRHTFNMLISKCCANGEINWAFDMVNVMTSLGISLD 858

Query: 841  TNTQDAIIMGLKRIAAFQESHFVLRGMAEKGLTPKCTQYITLINGMCRVGNFQGAFKLKD 900
             NT DAI+  L R   FQES  VL  M+++G++P+  +YI L+NG+CRVG+ + AF +K+
Sbjct: 859  KNTCDAIVSVLNRNHRFQESRMVLHEMSKQGISPESRKYIGLLNGLCRVGDIKTAFVVKE 918

Query: 901  EMEALGISSSDVAESAMVRGLAHCGKVEEAMLVLNRMLRMRLVPTIATFTTLIHKFCKEA 960
            EM A  I   +VAESAMVR LA CGK +EA L+L  ML+M+LVPTIA+FTTL+H FCK  
Sbjct: 919  EMIAHKICPPNVAESAMVRALAKCGKADEASLLLRSMLKMKLVPTIASFTTLMHLFCKNG 978

Query: 961  KFVDALKLKGTMELSGVKLDVVSYNVLISGLCANGDVMPAFELYEEMKHKGLCPNSTTYS 1020
               +AL+L+  M   G+KLD+VSYNVLI+GLCA GD+  AFEL+EEMK  G   N TTY 
Sbjct: 979  NVTEALELRVVMSNCGLKLDLVSYNVLITGLCAKGDMAIAFELFEEMKRDGFLANVTTYK 1038

Query: 1021 VLIDAISKKENNLVKGEILLKDIQERGFIS 1050
             L+  I  +       +I+LKD+  RGFI+
Sbjct: 1039 ALVGGILSQGTEFSGTDIILKDLLARGFIT 1068

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	1211
TAIR|locus:2168078	907	AT5G59900 "AT5G59900" [Arabido	0.664	0.887	0.280	1.8e-84
TAIR|locus:2164910	747	EMB2745 "EMBRYO DEFECTIVE 2745	0.549	0.890	0.312	7.2e-84
TAIR|locus:2150024	729	AT5G01110 [Arabidopsis thalian	0.507	0.843	0.289	2.9e-79
TAIR|locus:2116772	1112	PGR3 "AT4G31850" [Arabidopsis	0.744	0.810	0.251	6e-77
TAIR|locus:2827701	874	AT2G17140 [Arabidopsis thalian	0.610	0.845	0.271	2.8e-75
TAIR|locus:2016427	904	AT1G19290 [Arabidopsis thalian	0.649	0.870	0.250	4.2e-72
TAIR|locus:2174008	974	AT5G61990 "AT5G61990" [Arabido	0.564	0.702	0.284	5.4e-72
TAIR|locus:2155730	915	AT5G65560 "AT5G65560" [Arabido	0.373	0.493	0.313	6.7e-69
TAIR|locus:2039415	743	AT2G16880 "AT2G16880" [Arabido	0.479	0.781	0.306	3.5e-68
TAIR|locus:2077637	871	AT3G06920 "AT3G06920" [Arabido	0.592	0.823	0.255	1.9e-66

TAIR|locus:2168078 AT5G59900 "AT5G59900" [Arabidopsis thaliana (taxid:3702)]

 Score = 846 (302.9 bits), Expect = 1.8e-84, P = 1.8e-84
 Identities = 229/816 (28%), Positives = 389/816 (47%)

Query:    33 RLALKFLNWVMNQPGLELKHLTHILCLTTHVLVKTRMYEDAKLILRQLAQMGIGQNSVFG 92
             +L L+F N++    G +  H T   C+  H LVK  ++  A  +L+ L    +  + VF 
Sbjct:    85 KLGLRFFNFLGLHRGFD--HSTASFCILIHALVKANLFWPASSLLQTLLLRALKPSDVFN 142

Query:    93 SLMNTYPLCN-SNPSVFDLLIRVYLREGMVEYALETFQLMGFR-GFNPSVYTCNMMLSFM 150
              L + Y  C  S+ S FDLLI+ Y+R   V   +  F++M  +    P V T + +L  +
Sbjct:   143 VLFSCYEKCKLSSSSSFDLLIQHYVRSRRVLDGVLVFKMMITKVSLLPEVRTLSALLHGL 202

Query:   151 LKDRRVDSVWLLFDDMLDRKICPNVATFNILINVSCVEGKLKKAGYLLRKMEESGYVPNI 210
             +K R       LF+DM+   I P+V  +  +I   C    L +A  ++  ME +G   NI
Sbjct:   203 VKFRHFGLAMELFNDMVSVGIRPDVYIYTGVIRSLCELKDLSRAKEMIAHMEATGCDVNI 262

Query:   211 VTYNTLLNWYCKKGRYKAAFKLIDCMASKGIEADVCTYNMFIDDLCRNNRSAKGYLLLKN 270
             V YN L++  CKK +   A  +   +A K ++ DV TY   +  LC+      G  ++  
Sbjct:   263 VPYNVLIDGLCKKQKVWEAVGIKKDLAGKDLKPDVVTYCTLVYGLCKVQEFEIGLEMMDE 322

Query:   271 MRKRMITPNEVTYNTLINGFVKEGKIQVASRVFDEMSMLNFSPNSITYNELIDGHCCKGN 330
             M     +P+E   ++L+ G  K GKI+ A  +   +     SPN   YN LID   CKG 
Sbjct:   323 MLCLRFSPSEAAVSSLVEGLRKRGKIEEALNLVKRVVDFGVSPNLFVYNALIDS-LCKGR 381

Query:   331 -FKEAFRLLAMMEEMGLRPNEVSYGALLNGFCKHAKFDLARSLLERMRTNGISISCIAYT 389
              F EA  L   M ++GLRPN+V+Y  L++ FC+  K D A S L  M   G+ +S   Y 
Sbjct:   382 KFHEAELLFDRMGKIGLRPNDVTYSILIDMFCRRGKLDTALSFLGEMVDTGLKLSVYPYN 441

Query:   390 SVIDGLCKCGLLDEAMQLFNKMFKDGLNPDLITFSVLINGFCKVGMTRKAKAVLCKMYRD 449
             S+I+G CK G +  A     +M    L P ++T++ L+ G+C  G   KA  +  +M   
Sbjct:   442 SLINGHCKFGDISAAEGFMAEMINKKLEPTVVTYTSLMGGYCSKGKINKALRLYHEMTGK 501

Query:   450 GLVPNKIIYSTLIYYFCKMGKVTEAMKVYAVMNRNAQGSDHFTCNMLVASLCKGGKVCEA 509
             G+ P+   ++TL+    + G + +A+K++  M       +  T N+++   C+ G + +A
Sbjct:   502 GIAPSIYTFTTLLSGLFRAGLIRDAVKLFNEMAEWNVKPNRVTYNVMIEGYCEEGDMSKA 561

Query:   510 EDYVGHMKRIGVVPNSITFDCMIDGYGTLGDGLKAFSMFDEMVKLGHHPSIFTYXXXXXX 569
              +++  M   G+VP++ ++  +I G    G   +A    D + K     +   Y      
Sbjct:   562 FEFLKEMTEKGIVPDTYSYRPLIHGLCLTGQASEAKVFVDGLHKGNCELNEICYTGLLHG 621

Query:   570 XXXXXXXXEAKRFLNSLHHIPSAVDTVAYNTILAETCKSGNLWEAIVLLDEMVQFNLLPD 629
                     EA      +      +D V Y  ++  + K  +      LL EM    L PD
Sbjct:   622 FCREGKLEEALSVCQEMVQRGVDLDLVCYGVLIDGSLKHKDRKLFFGLLKEMHDRGLKPD 681

Query:   630 RYTYTILLAGLCRKGKVVSALLFFEKVVSKRTFSPNNVMFTCLVDGLFKAG-QSKAAMHI 688
                YT ++    + G    A   ++ ++++    PN V +T +++GL KAG  ++A +  
Sbjct:   682 DVIYTSMIDAKSKTGDFKEAFGIWDLMINEGCV-PNEVTYTAVINGLCKAGFVNEAEVLC 740

Query:   689 SKIMDKEGVYPDTIAFNAVMDGFSRMG-NMMMANDLLSTMRSRKLCPSLATYNILLHGYS 747
             SK+     V P+ + +   +D  ++   +M  A +L + +  + L  + ATYN+L+ G+ 
Sbjct:   741 SKMQPVSSV-PNQVTYGCFLDILTKGEVDMQKAVELHNAIL-KGLLANTATYNMLIRGFC 798

Query:   748 KKKDLLMCSMLLNTMKMEGLLPDKLTCHSLILGFCETGMLEVGFKFLKKMIAEGTMVDCF 807
             ++  +   S L+  M  +G+ PD +T  ++I   C    ++   +    M  +G   D  
Sbjct:   799 RQGRIEEASELITRMIGDGVSPDCITYTTMINELCRRNDVKKAIELWNSMTEKGIRPDRV 858

Query:   808 TFNVLMRKCCEAGEMGKAFDLFNIMNMLGVVPDTNT 843
              +N L+  CC AGEMGKA +L N M   G++P+  T
Sbjct:   859 AYNTLIHGCCVAGEMGKATELRNEMLRQGLIPNNKT 894

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2164910 EMB2745 "EMBRYO DEFECTIVE 2745" [Arabidopsis thaliana (taxid:3702)]

 Score = 841 (301.1 bits), Expect = 7.2e-84, P = 7.2e-84
 Identities = 215/689 (31%), Positives = 335/689 (48%)

Query:    34 LALKFLNWVMNQPGLELKHLTHILCLTTHVLVKTRMYEDAKLILRQLAQMGIGQ---NSV 90
             L LKFLNW        L+      C+T H+L K ++Y+ A+++   +A   +     + V
Sbjct:    64 LILKFLNWANPHQFFTLR----CKCITLHILTKFKLYKTAQILAEDVAAKTLDDEYASLV 119

Query:    91 FGSLMNTYPLCNSNPSVFDLLIRVYLREGMVEYALETFQLMGFRGFNPSVYTCNMMLSFM 150
             F SL  TY LC S  SVFDL+++ Y R  +++ AL    L    GF P V + N +L   
Sbjct:   120 FKSLQETYDLCYSTSSVFDLVVKSYSRLSLIDKALSIVHLAQAHGFMPGVLSYNAVLDAT 179

Query:   151 LKDRR-VDSVWLLFDDMLDRKICPNVATFNILINVSCVEGKLKKAGYLLRKMEESGYVPN 209
             ++ +R +     +F +ML+ ++ PNV T+NILI   C  G +  A  L  KME  G +PN
Sbjct:   180 IRSKRNISFAENVFKEMLESQVSPNVFTYNILIRGFCFAGNIDVALTLFDKMETKGCLPN 239

Query:   210 IVTYNTLLNWYCKKGRYKAAFKLIDCMASKGIEADVCTYNMFIDDLCRNNRSAKGYLLLK 269
             +VTYNTL++ YCK  +    FKL+  MA KG+E ++ +YN+ I+ LCR  R  +   +L 
Sbjct:   240 VVTYNTLIDGYCKLRKIDDGFKLLRSMALKGLEPNLISYNVVINGLCREGRMKEVSFVLT 299

Query:   270 NMRKRMITPNEVTYNTLINGFVKEGKIQVASRVFDEMSMLNFSPNSITYNELIDGHCCKG 329
              M +R  + +EVTYNTLI G+ KEG    A  +  EM     +P+ ITY  LI   C  G
Sbjct:   300 EMNRRGYSLDEVTYNTLIKGYCKEGNFHQALVMHAEMLRHGLTPSVITYTSLIHSMCKAG 359

Query:   330 NFKEAFRLLAMMEEMGLRPNEVSYGALLNGFCKHAKFDLARSLLERMRTNGISISCIAYT 389
             N   A   L  M   GL PNE +Y  L++GF +    + A  +L  M  NG S S + Y 
Sbjct:   360 NMNRAMEFLDQMRVRGLCPNERTYTTLVDGFSQKGYMNEAYRVLREMNDNGFSPSVVTYN 419

Query:   390 SVIDGLCKCGLLDEAMQLFNKMFKDGLNPDLITFSVLINGFCKVGMTRKAKAVLCKMYRD 449
             ++I+G C  G +++A+ +   M + GL+PD++++S +++GFC+     +A  V  +M   
Sbjct:   420 ALINGHCVTGKMEDAIAVLEDMKEKGLSPDVVSYSTVLSGFCRSYDVDEALRVKREMVEK 479

Query:   450 GLVPNKIIYSTLIYYFCKMGKVTEAMKVYAVMNRNAQGSDHFTCNMLVASLCKGGKVCEA 509
             G+ P+ I YS+LI  FC+  +  EA  +Y  M R     D FT   L+ + C  G + +A
Sbjct:   480 GIKPDTITYSSLIQGFCEQRRTKEACDLYEEMLRVGLPPDEFTYTALINAYCMEGDLEKA 539

Query:   510 EDYVGHMKRIGVVPNSITFDCMIDGYGTLGDGLKAFSMFDEMVKLGHHPSIFTYXXXXXX 569
                   M   GV+P+ +T+  +I+G        +A  +  ++      PS  TY      
Sbjct:   540 LQLHNEMVEKGVLPDVVTYSVLINGLNKQSRTREAKRLLLKLFYEESVPSDVTYHTLIEN 599

Query:   570 XXXXXXXX---------------EAKRFLNSLHHIPSAVDTVAYNTILAETCKSGNLWEA 614
                                    EA +   S+       D  AYN ++   C++G++ +A
Sbjct:   600 CSNIEFKSVVSLIKGFCMKGMMTEADQVFESMLGKNHKPDGTAYNIMIHGHCRAGDIRKA 659

Query:   615 IVLLDEMVQFNLLPDRYTYTILLAGLCRKGKVVSALLFFEKVVSKRTFSPNNVMFTCLVD 674
               L  EMV+   L    T   L+  L ++GKV         V+     S        LV+
Sbjct:   660 YTLYKEMVKSGFLLHTVTVIALVKALHKEGKVNELNSVIVHVLRSCELSEAE-QAKVLVE 718

Query:   675 GLFKAGQSKAAMHISKIMDKEGVYPDTIA 703
                + G     + +   M K+G  P+ I+
Sbjct:   719 INHREGNMDVVLDVLAEMAKDGFLPNGIS 747

GO:0005739 "mitochondrion" evidence=ISM;IDA

GO:0009793 "embryo development ending in seed dormancy" evidence=NAS

TAIR|locus:2150024 AT5G01110 [Arabidopsis thaliana (taxid:3702)]

 Score = 801 (287.0 bits), Expect = 2.9e-79, P = 2.9e-79
 Identities = 179/619 (28%), Positives = 318/619 (51%)

Query:    51 KHLTHILCLTTHVLVKTRMYEDAK-LILRQLAQMGIGQNSVFGSLMNTYPLCNSNPSVFD 109
             KH +  L    H+LV++    DA+  +LR + + G+ +  +  SL +T+  C SN SVFD
Sbjct:   110 KHTSLSLSAMIHILVRSGRLSDAQSCLLRMIRRSGVSRLEIVNSLDSTFSNCGSNDSVFD 169

Query:   110 LLIRVYLREGMVEYALETFQLMGFRGFNPSVYTCNMMLSFMLKDRRVDSVWLLFDDMLDR 169
             LLIR Y++   +  A E F L+  +GF  S+  CN ++  +++   V+  W ++ ++   
Sbjct:   170 LLIRTYVQARKLREAHEAFTLLRSKGFTVSIDACNALIGSLVRIGWVELAWGVYQEISRS 229

Query:   170 KICPNVATFNILINVSCVEGKLKKAGYLLRKMEESGYVPNIVTYNTLLNWYCKKGRYKAA 229
              +  NV T NI++N  C +GK++K G  L +++E G  P+IVTYNTL++ Y  KG  + A
Sbjct:   230 GVGINVYTLNIMVNALCKDGKMEKVGTFLSQVQEKGVYPDIVTYNTLISAYSSKGLMEEA 289

Query:   230 FKLIDCMASKGIEADVCTYNMFIDDLCRNNRSAKGYLLLKNMRKRMITPNEVTYNTLING 289
             F+L++ M  KG    V TYN  I+ LC++ +  +   +   M +  ++P+  TY +L+  
Sbjct:   290 FELMNAMPGKGFSPGVYTYNTVINGLCKHGKYERAKEVFAEMLRSGLSPDSTTYRSLLME 349

Query:   290 FVKEGKIQVASRVFDEMSMLNFSPNSITYNELIDGHCCKGNFKEAFRLLAMMEEMGLRPN 349
               K+G +    +VF +M   +  P+ + ++ ++      GN  +A      ++E GL P+
Sbjct:   350 ACKKGDVVETEKVFSDMRSRDVVPDLVCFSSMMSLFTRSGNLDKALMYFNSVKEAGLIPD 409

Query:   350 EVSYGALLNGFCKHAKFDLARSLLERMRTNGISISCIAYTSVIDGLCKCGLLDEAMQLFN 409
              V Y  L+ G+C+     +A +L   M   G ++  + Y +++ GLCK  +L EA +LFN
Sbjct:   410 NVIYTILIQGYCRKGMISVAMNLRNEMLQQGCAMDVVTYNTILHGLCKRKMLGEADKLFN 469

Query:   410 KMFKDGLNPDLITFSVLINGFCKVGMTRKAKAVLCKMYRDGLVPNKIIYSTLIYYFCKMG 469
             +M +  L PD  T ++LI+G CK+G  + A  +  KM    +  + + Y+TL+  F K+G
Sbjct:   470 EMTERALFPDSYTLTILIDGHCKLGNLQNAMELFQKMKEKRIRLDVVTYNTLLDGFGKVG 529

Query:   470 KVTEAMKVYAVMNRNAQGSDHFTCNMLVASLCKGGKVCEAEDYVGHMKRIGVVPNSITFD 529
              +  A +++A M          + ++LV +LC  G + EA      M    + P  +  +
Sbjct:   530 DIDTAKEIWADMVSKEILPTPISYSILVNALCSKGHLAEAFRVWDEMISKNIKPTVMICN 589

Query:   530 CMIDGYGTLGDGLKAFSMFDEMVKLGHHPSIFTYXXXXXXXXXXXXXXEAKRFLNSLHHI 589
              MI GY   G+     S  ++M+  G  P   +Y              +A   +  +   
Sbjct:   590 SMIKGYCRSGNASDGESFLEKMISEGFVPDCISYNTLIYGFVREENMSKAFGLVKKMEEE 649

Query:   590 PSAV--DTVAYNTILAETCKSGNLWEAIVLLDEMVQFNLLPDRYTYTILLAGLCRKGKVV 647
                +  D   YN+IL   C+   + EA V+L +M++  + PDR TYT ++ G   +  + 
Sbjct:   650 QGGLVPDVFTYNSILHGFCRQNQMKEAEVVLRKMIERGVNPDRSTYTCMINGFVSQDNLT 709

Query:   648 SALLFFEKVVSKRTFSPNN 666
              A    ++++ +R FSP++
Sbjct:   710 EAFRIHDEML-QRGFSPDD 727

GO:0005739 "mitochondrion" evidence=ISM

TAIR|locus:2116772 PGR3 "AT4G31850" [Arabidopsis thaliana (taxid:3702)]

 Score = 794 (284.6 bits), Expect = 6.0e-77, P = 6.0e-77
 Identities = 229/909 (25%), Positives = 403/909 (44%)

Query:   123 YALETFQLMGFRGFNPSVYTCNMMLSFMLKDRRVDSVWLLFDDMLDRKICPNVATFNILI 182
             YAL   ++  F GF  + Y+ N ++  +LK R       ++  M+     P++ T++ L+
Sbjct:   174 YALR--KMREF-GFVLNAYSYNGLIHLLLKSRFCTEAMEVYRRMILEGFRPSLQTYSSLM 230

Query:   183 NVSCVEGKLKKAGYLLRKMEESGYVPNIVTYNTLLNWYCKKGRYKAAFKLIDCMASKGIE 242
                     +     LL++ME  G  PN+ T+   +    + G+   A++++  M  +G  
Sbjct:   231 VGLGKRRDIDSVMGLLKEMETLGLKPNVYTFTICIRVLGRAGKINEAYEILKRMDDEGCG 290

Query:   243 ADVCTYNMFIDDLCRNNRSAKGYLLLKNMRKRMITPNEVTYNTLINGFVKEGKIQVASRV 302
              DV TY + ID LC   +      + + M+     P+ VTY TL++ F     +    + 
Sbjct:   291 PDVVTYTVLIDALCTARKLDCAKEVFEKMKTGRHKPDRVTYITLLDRFSDNRDLDSVKQF 350

Query:   303 FDEMSMLNFSPNSITYNELIDGHCCKGNFKEAFRLLAMMEEMGLRPNEVSYGALLNGFCK 362
             + EM      P+ +T+  L+D  C  GNF EAF  L +M + G+ PN  +Y  L+ G  +
Sbjct:   351 WSEMEKDGHVPDVVTFTILVDALCKAGNFGEAFDTLDVMRDQGILPNLHTYNTLICGLLR 410

Query:   363 HAKFDLARSLLERMRTNGISISCIAYTSVIDGLCKCGLLDEAMQLFNKMFKDGLNPDLIT 422
               + D A  L   M + G+  +   Y   ID   K G    A++ F KM   G+ P+++ 
Sbjct:   411 VHRLDDALELFGNMESLGVKPTAYTYIVFIDYYGKSGDSVSALETFEKMKTKGIAPNIVA 470

Query:   423 FSVLINGFCKVGMTRKAKAVLCKMYRDGLVPNKIIYSTLIYYFCKMGKVTEAMKVYAVMN 482
              +  +    K G  R+AK +   +   GLVP+ + Y+ ++  + K+G++ EA+K+ + M 
Sbjct:   471 CNASLYSLAKAGRDREAKQIFYGLKDIGLVPDSVTYNMMMKCYSKVGEIDEAIKLLSEMM 530

Query:   483 RNAQGSDHFTCNMLVASLCKGGKVCEAEDYVGHMKRIGVVPNSITFDCMIDGYGTLGDGL 542
              N    D    N L+ +L K  +V EA      MK + + P  +T++ ++ G G  G   
Sbjct:   531 ENGCEPDVIVVNSLINTLYKADRVDEAWKMFMRMKEMKLKPTVVTYNTLLAGLGKNGKIQ 590

Query:   543 KAFSMFDEMVKLGHHPSIFTYXXXXXXXXXXXXXXEAKRFLNSLHHIPSAVDTVAYNTIL 602
             +A  +F+ MV+ G  P+  T+               A + L  +  +    D   YNTI+
Sbjct:   591 EAIELFEGMVQKGCPPNTITFNTLFDCLCKNDEVTLALKMLFKMMDMGCVPDVFTYNTII 650

Query:   603 AETCKSGNLWEAIVLLDEMVQFNLLPDRYTYTILLAGLCRKGKVVSALLFFEKVVSKRTF 662
                 K+G + EA+    +M +  + PD  T   LL G+ +   +  A       +     
Sbjct:   651 FGLVKNGQVKEAMCFFHQMKKL-VYPDFVTLCTLLPGVVKASLIEDAYKIITNFLYNCAD 709

Query:   663 SPNNVMFTCLVDGLFKAGQSKAAMHISKIMDKEGVYPDTIAFNAVMDGFS-RMGNMMMAN 721
              P N+ +  L+  +        A+  S+ +   G+  D  +    +  +S +  N+  A 
Sbjct:   710 QPANLFWEDLIGSILAEAGIDNAVSFSERLVANGICRDGDSILVPIIRYSCKHNNVSGAR 769

Query:   722 DLLSTM-RSRKLCPSLATYNILLHGYSKKKDLLMCSMLLNTMKMEGLLPDKLTCHSLILG 780
              L     +   + P L TYN+L+ G  +   + +   +   +K  G +PD  T + L+  
Sbjct:   770 TLFEKFTKDLGVQPKLPTYNLLIGGLLEADMIEIAQDVFLQVKSTGCIPDVATYNFLLDA 829

Query:   781 FCETGMLEVGFKFLKKMIAEGTMVDCFTFNVLMRKCCEAGEMGKAFDLF-NIMNMLGVVP 839
             + ++G ++  F+  K+M       +  T N+++    +AG +  A DL+ ++M+     P
Sbjct:   830 YGKSGKIDELFELYKEMSTHECEANTITHNIVISGLVKAGNVDDALDLYYDLMSDRDFSP 889

Query:   840 DTNTQDAIIMGLKRIAAFQESHFVLRGMAEKGLTPKCTQYITLINGMCRVGNFQGAFKLK 899
                T   +I GL +     E+  +  GM + G  P C  Y  LING  + G    A  L 
Sbjct:   890 TACTYGPLIDGLSKSGRLYEAKQLFEGMLDYGCRPNCAIYNILINGFGKAGEADAACALF 949

Query:   900 DEMEALGISSSDVAESAMVRGLAHCGKVEEAXXXXXXXXXXXXXPTIATFTTLIHKFCKE 959
               M   G+       S +V  L   G+V+E              P +  +  +I+   K 
Sbjct:   950 KRMVKEGVRPDLKTYSVLVDCLCMVGRVDEGLHYFKELKESGLNPDVVCYNLIINGLGKS 1009

Query:   960 AKFVDALKLKGTMELS-GVKLDVVSYNVLISGLCANGDVMPAFELYEEMKHKGLCPNSTT 1018
              +  +AL L   M+ S G+  D+ +YN LI  L   G V  A ++Y E++  GL PN  T
Sbjct:  1010 HRLEEALVLFNEMKTSRGITPDLYTYNSLILNLGIAGMVEEAGKIYNEIQRAGLEPNVFT 1069

Query:  1019 YSVLIDAIS 1027
             ++ LI   S
Sbjct:  1070 FNALIRGYS 1078

GO:0008150 "biological_process" evidence=ND

GO:0000023 "maltose metabolic process" evidence=RCA

GO:0000272 "polysaccharide catabolic process" evidence=RCA

GO:0005982 "starch metabolic process" evidence=RCA

GO:0006098 "pentose-phosphate shunt" evidence=RCA

GO:0006655 "phosphatidylglycerol biosynthetic process" evidence=RCA

GO:0009664 "plant-type cell wall organization" evidence=RCA

GO:0009902 "chloroplast relocation" evidence=RCA

GO:0010027 "thylakoid membrane organization" evidence=RCA

GO:0010075 "regulation of meristem growth" evidence=RCA

GO:0019252 "starch biosynthetic process" evidence=RCA

GO:0019288 "isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway" evidence=RCA

GO:0034660 "ncRNA metabolic process" evidence=RCA

GO:0046777 "protein autophosphorylation" evidence=RCA

TAIR|locus:2827701 AT2G17140 [Arabidopsis thaliana (taxid:3702)]

 Score = 765 (274.4 bits), Expect = 2.8e-75, P = 2.8e-75
 Identities = 211/777 (27%), Positives = 361/777 (46%)

Query:    33 RLALKFLNWVMNQPGLELKHLTHILCLT-THVLVKTRMYEDAKLILRQLAQMGIGQNSVF 91
             RLA +    + + P  E   ++     T   +LV+ +M+E+ + +   +    I Q +  
Sbjct:    17 RLAWRIFKRIFSSPSEESHGISLDATPTIARILVRAKMHEEIQELHNLILSSSI-QKTKL 75

Query:    92 GSLMNTYPLCNSNPSVFDLLIRVYLREGMVEYALETFQLMG--FRGFNPSVYTCNMMLSF 149
              SL++              ++ ++ +   ++ A   FQL+   F    PSVY  N++L  
Sbjct:    76 SSLLS--------------VVSIFAKSNHIDKAFPQFQLVRSRFPENKPSVYLYNLLLES 121

Query:   150 MLKDRRVDSVWLLFDDMLDRKICPNVATFNILINVSCVEGKLKKAGYLLRKMEESGYVPN 209
              +K+RRV+ V  L+ DM+   I P   TFN+LI   C    +  A  L  +M E G  PN
Sbjct:   122 CIKERRVEFVSWLYKDMVLCGIAPQTYTFNLLIRALCDSSCVDAARELFDEMPEKGCKPN 181

Query:   210 IVTYNTLLNWYCKKGRYKAAFKLIDCMASKGIEADVCTYNMFIDDLCRNNRSAKGYLLLK 269
               T+  L+  YCK G      +L++ M S G+  +   YN  +   CR  R+     +++
Sbjct:   182 EFTFGILVRGYCKAGLTDKGLELLNAMESFGVLPNKVIYNTIVSSFCREGRNDDSEKMVE 241

Query:   270 NMRKRMITPNEVTYNTLINGFVKEGKIQVASRVFDEMSMLNF----SPNSITYNELIDGH 325
              MR+  + P+ VT+N+ I+   KEGK+  ASR+F +M +  +     PNSITYN ++ G 
Sbjct:   242 KMREEGLVPDIVTFNSRISALCKEGKVLDASRIFSDMELDEYLGLPRPNSITYNLMLKGF 301

Query:   326 CCKGNFKEAFRLLAMMEEMGLRPNEVSYGALLNGFCKHAKFDLARSLLERMRTNGISISC 385
             C  G  ++A  L   + E     +  SY   L G  +H KF  A ++L++M   GI  S 
Sbjct:   302 CKVGLLEDAKTLFESIRENDDLASLQSYNIWLQGLVRHGKFIEAETVLKQMTDKGIGPSI 361

Query:   386 IAYTSVIDGLCKCGLLDEAMQLFNKMFKDGLNPDLITFSVLINGFCKVGMTRKAKAVLCK 445
              +Y  ++DGLCK G+L +A  +   M ++G+ PD +T+  L++G+C VG    AK++L +
Sbjct:   362 YSYNILMDGLCKLGMLSDAKTIVGLMKRNGVCPDAVTYGCLLHGYCSVGKVDAAKSLLQE 421

Query:   446 MYRDGLVPNKIIYSTLIYYFCKMGKVTEAMKVYAVMNRNAQGSDHFTCNMLVASLCKGGK 505
             M R+  +PN    + L++   KMG+++EA ++   MN    G D  TCN++V  LC  G+
Sbjct:   422 MMRNNCLPNAYTCNILLHSLWKMGRISEAEELLRKMNEKGYGLDTVTCNIIVDGLCGSGE 481

Query:   506 VCEAEDYVGHMKRIGVVPNSITFDCMIDGYGTLGDGLKAFSMFDEMVKLGHHPSIFTYXX 565
             + +A + V  M+    V  S          G LG+      + D +++    P + TY  
Sbjct:   482 LDKAIEIVKGMR----VHGSAAL-------GNLGNSYIGL-VDDSLIENNCLPDLITYST 529

Query:   566 XXXXXXXXXXXXEAKRFLNSLHHIPSAVDTVAYNTILAETCKSGNLWEAIVLLDEMVQFN 625
                         EAK     +       D+VAYN  +   CK G +  A  +L +M +  
Sbjct:   530 LLNGLCKAGRFAEAKNLFAEMMGEKLQPDSVAYNIFIHHFCKQGKISSAFRVLKDMEKKG 589

Query:   626 LLPDRYTYTILLAGLCRKGKVVSALLFFEKVVSKRTFSPNNVMFTCLVDGLFKAGQSKAA 685
                   TY  L+ GL  K ++       +++  K   SPN   +   +  L +  + + A
Sbjct:   590 CHKSLETYNSLILGLGIKNQIFEIHGLMDEMKEKG-ISPNICTYNTAIQYLCEGEKVEDA 648

Query:   686 MHISKIMDKEGVYPDTIAFNAVMDGFSRMGNMMMANDLLSTMRSRKLCPSL-ATYNILLH 744
              ++   M ++ + P+  +F  +++ F ++ +  MA ++  T  S  +C      Y+++ +
Sbjct:   649 TNLLDEMMQKNIAPNVFSFKYLIEAFCKVPDFDMAQEVFETAVS--ICGQKEGLYSLMFN 706

Query:   745 GYSKKKDLLMCSMLLNTMKMEGLLPDKLTCHSLILGFCETGMLEVGFKFLKKMIAEG 801
                    LL  + LL  +   G          L+   C+   LEV    L KMI  G
Sbjct:   707 ELLAAGQLLKATELLEAVLDRGFELGTFLYKDLVESLCKKDELEVASGILHKMIDRG 763

GO:0005739 "mitochondrion" evidence=ISM

TAIR|locus:2016427 AT1G19290 [Arabidopsis thaliana (taxid:3702)]

 Score = 736 (264.1 bits), Expect = 4.2e-72, P = 4.2e-72
 Identities = 203/811 (25%), Positives = 383/811 (47%)

Query:     8 LLTIDRWESLNHMEYKLAS--LRPVHGRL------ALKFLNWVMNQPGLELKHLTHILCL 59
             LL + R+E+L+ +    +   L  +  RL       L+  N    Q      +  +  C 
Sbjct:    52 LLVLGRYEALHDLSLDFSDELLNSILRRLRLNPEACLEIFNLASKQQKFRPDYKAY--CK 109

Query:    60 TTHVLVKTRMYEDAKLILRQLAQMGIGQNSVFGSLMNTYPLCNSNPSVFDLLIRVYLREG 119
               H+L + R Y+  K  L +L  +      V+G L+  +   + +P+VFD++++VY  +G
Sbjct:   110 MVHILSRARNYQQTKSYLCELVALNHSGFVVWGELVRVFKEFSFSPTVFDMILKVYAEKG 169

Query:   120 MVEYALETFQLMGFRGFNPSVYTCNMMLSFMLKDRRVDSVWLLFDDMLDRKICPNVATFN 179
             +V+ AL  F  MG  G  PS+ +CN +LS +++         ++D M+  ++ P+V T +
Sbjct:   170 LVKNALHVFDNMGNYGRIPSLLSCNSLLSNLVRKGENFVALHVYDQMISFEVSPDVFTCS 229

Query:   180 ILINVSCVEGKLKKAGYLLRKMEES-GYVPNIVTYNTLLNWYCKKGRYKAAFKLIDCMAS 238
             I++N  C  G + KA    ++ E S G   N+VTYN+L+N Y   G  +   +++  M+ 
Sbjct:   230 IVVNAYCRSGNVDKAMVFAKETESSLGLELNVVTYNSLINGYAMIGDVEGMTRVLRLMSE 289

Query:   239 KGIEADVCTYNMFIDDLCRNNRSAKGYLLLKNMRKRMITPNEVTYNTLINGFVKEGKIQV 298
             +G+  +V TY   I   C+     +   + + ++++ +  ++  Y  L++G+ + G+I+ 
Sbjct:   290 RGVSRNVVTYTSLIKGYCKKGLMEEAEHVFELLKEKKLVADQHMYGVLMDGYCRTGQIRD 349

Query:   299 ASRVFDEMSMLNFSPNSITYNELIDGHCCKGNFKEAFRLLAMMEEMGLRPNEVSYGALLN 358
             A RV D M  +    N+   N LI+G+C  G   EA ++ + M +  L+P+  +Y  L++
Sbjct:   350 AVRVHDNMIEIGVRTNTTICNSLINGYCKSGQLVEAEQIFSRMNDWSLKPDHHTYNTLVD 409

Query:   359 GFCKHAKFDLARSLLERMRTNGISISCIAYTSVIDGLCKCGLLDEAMQLFNKMFKDGLNP 418
             G+C+    D A  L ++M    +  + + Y  ++ G  + G   + + L+  M K G+N 
Sbjct:   410 GYCRAGYVDEALKLCDQMCQKEVVPTVMTYNILLKGYSRIGAFHDVLSLWKMMLKRGVNA 469

Query:   419 DLITFSVLINGFCKVGMTRKAKAVLCKMYRDGLVPNKIIYSTLIYYFCKMGKVTEAMKVY 478
             D I+ S L+    K+G   +A  +   +   GL+ + I  + +I   CKM KV EA ++ 
Sbjct:   470 DEISCSTLLEALFKLGDFNEAMKLWENVLARGLLTDTITLNVMISGLCKMEKVNEAKEIL 529

Query:   479 AVMNRNAQGSDHFTCNMLVASLCKGGKVCEAEDYVGHMKRIGVVPNSITFDCMIDGYGTL 538
               +N         T   L     K G + EA     +M+R G+ P    ++ +I G    
Sbjct:   530 DNVNIFRCKPAVQTYQALSHGYYKVGNLKEAFAVKEYMERKGIFPTIEMYNTLISGAFKY 589

Query:   539 GDGLKAFSMFDEMVKLGHHPSIFTYXXXXXXXXXXXXXXEAKRFLNSLHHIPSAVDTVAY 598
                 K   +  E+   G  P++ TY              +A  +      I   + T+  
Sbjct:   590 RHLNKVADLVIELRARGLTPTVATYGALITGWCNIGMIDKA--YATCFEMIEKGI-TLNV 646

Query:   599 NTI--LAETC-KSGNLWEAIVLLDEMVQFNLLPDRYT----YTILLAGLCRKGKVVSALL 651
             N    +A +  +   + EA +LL ++V F+LL   Y     +    A  C K + ++  +
Sbjct:   647 NICSKIANSLFRLDKIDEACLLLQKIVDFDLLLPGYQSLKEFLEASATTCLKTQKIAESV 706

Query:   652 FFEKVVSKRTFSPNNVMFTCLVDGLFKAGQSKAAMHI-SKIMDKEGVYPDTIAFNAVMDG 710
               E    K+   PNN+++   + GL KAG+ + A  + S ++  +   PD   +  ++ G
Sbjct:   707 --ENSTPKKLLVPNNIVYNVAIAGLCKAGKLEDARKLFSDLLSSDRFIPDEYTYTILIHG 764

Query:   711 FSRMGNMMMANDLLSTMRSRKLCPSLATYNILLHGYSKKKDLLMCSMLLNTMKMEGLLPD 770
              +  G++  A  L   M  + + P++ TYN L+ G  K  ++     LL+ +  +G+ P+
Sbjct:   765 CAIAGDINKAFTLRDEMALKGIIPNIVTYNALIKGLCKLGNVDRAQRLLHKLPQKGITPN 824

Query:   771 KLTCHSLILGFCETGMLEVGFKFLKKMIAEG 801
              +T ++LI G  ++G +    +  +KMI +G
Sbjct:   825 AITYNTLIDGLVKSGNVAEAMRLKEKMIEKG 855

GO:0005739 "mitochondrion" evidence=ISM

TAIR|locus:2174008 AT5G61990 "AT5G61990" [Arabidopsis thaliana (taxid:3702)]

 Score = 735 (263.8 bits), Expect = 5.4e-72, P = 5.4e-72
 Identities = 199/699 (28%), Positives = 329/699 (47%)

Query:   156 VDSVWLLFDDMLDRKICPNVATFNILINVSCVEGKLKKAGYLLRKMEESGYVPNIVTYNT 215
             VD    L + M+ + + P   T+++LI+  C   +L+ A  LL +M+  G   +  TY+ 
Sbjct:   258 VDGALKLKESMICKGLVPLKYTYDVLIDGLCKIKRLEDAKSLLVEMDSLGVSLDNHTYSL 317

Query:   216 LLNWYCKKGRYKAAFKLIDCMASKGIEADVCTYNMFIDDLCRNNRSAKGYLLLKNMRKRM 275
             L++   K     AA  L+  M S GI      Y+  I  + +     K   L   M    
Sbjct:   318 LIDGLLKGRNADAAKGLVHEMVSHGINIKPYMYDCCICVMSKEGVMEKAKALFDGMIASG 377

Query:   276 ITPNEVTYNTLINGFVKEGKIQVASRVFDEMSMLNFSPNSITYNELIDGHCCKGNFKEAF 335
             + P    Y +LI G+ +E  ++    +  EM   N   +  TY  ++ G C  G+   A+
Sbjct:   378 LIPQAQAYASLIEGYCREKNVRQGYELLVEMKKRNIVISPYTYGTVVKGMCSSGDLDGAY 437

Query:   336 RLLAMMEEMGLRPNEVSYGALLNGFCKHAKFDLARSLLERMRTNGISISCIAYTSVIDGL 395
              ++  M   G RPN V Y  L+  F ++++F  A  +L+ M+  GI+     Y S+I GL
Sbjct:   438 NIVKEMIASGCRPNVVIYTTLIKTFLQNSRFGDAMRVLKEMKEQGIAPDIFCYNSLIIGL 497

Query:   396 CKCGLLDEAMQLFNKMFKDGLNPDLITFSVLINGFCKVGMTRKAKAVLCKMYRDGLVPNK 455
              K   +DEA     +M ++GL P+  T+   I+G+ +      A   + +M   G++PNK
Sbjct:   498 SKAKRMDEARSFLVEMVENGLKPNAFTYGAFISGYIEASEFASADKYVKEMRECGVLPNK 557

Query:   456 IIYSTLIYYFCKMGKVTEAMKVYAVMNRNAQGSDHFTCNMLVASLCKGGKVCEAEDYVGH 515
             ++ + LI  +CK GKV EA   Y  M       D  T  +L+  L K  KV +AE+    
Sbjct:   558 VLCTGLINEYCKKGKVIEACSAYRSMVDQGILGDAKTYTVLMNGLFKNDKVDDAEEIFRE 617

Query:   516 MKRIGVVPNSITFDCMIDGYGTLGDGLKAFSMFDEMVKLGHHPSIFTYXXXXXXXXXXXX 575
             M+  G+ P+  ++  +I+G+  LG+  KA S+FDEMV+ G  P++  Y            
Sbjct:   618 MRGKGIAPDVFSYGVLINGFSKLGNMQKASSIFDEMVEEGLTPNVIIYNMLLGGFCRSGE 677

Query:   576 XXEAKRFLNSLHHIPSAVDTVAYNTILAETCKSGNLWEAIVLLDEMVQFNLLPDRYTYTI 635
               +AK  L+ +       + V Y TI+   CKSG+L EA  L DEM    L+PD + YT 
Sbjct:   678 IEKAKELLDEMSVKGLHPNAVTYCTIIDGYCKSGDLAEAFRLFDEMKLKGLVPDSFVYTT 737

Query:   636 LLAGLCRKGKVVSALLFFEKVVSKRTFSPNNVMFTCLVDGLFKAGQSKAAMHI-SKIMDK 694
             L+ G CR   V  A+  F    +K+  + +   F  L++ +FK G+++    + +++MD 
Sbjct:   738 LVDGCCRLNDVERAITIFG--TNKKGCASSTAPFNALINWVFKFGKTELKTEVLNRLMD- 794

Query:   695 EGVY-----PDTIAFNAVMDGFSRMGNMMMANDLLSTMRSRKLCPSLATYNILLHGYSKK 749
              G +     P+ + +N ++D   + GN+  A +L   M++  L P++ TY  LL+GY K 
Sbjct:   795 -GSFDRFGKPNDVTYNIMIDYLCKEGNLEAAKELFHQMQNANLMPTVITYTSLLNGYDKM 853

Query:   750 KDLLMCSMLLNTMKMEGLLPDKLTCHSLILGFCETGMLE-----VGFKFLKKMIAEGTMV 804
                     + +     G+ PD +    +I  F + GM       V   F K  + +G  +
Sbjct:   854 GRRAEMFPVFDEAIAAGIEPDHIMYSVIINAFLKEGMTTKALVLVDQMFAKNAVDDGCKL 913

Query:   805 DCFTFNVLMRKCCEAGEMGKAFDLFNIMNMLGVVPDTNT 843
                T   L+    + GEM  A  +   M  L  +PD+ T
Sbjct:   914 SISTCRALLSGFAKVGEMEVAEKVMENMVRLQYIPDSAT 952

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2155730 AT5G65560 "AT5G65560" [Arabidopsis thaliana (taxid:3702)]

 Score = 636 (228.9 bits), Expect = 6.7e-69, Sum P(2) = 6.7e-69
 Identities = 142/453 (31%), Positives = 232/453 (51%)

Query:   111 LIRVYLREGMVEYALETFQLMGFRGFNPSVYTCNMMLSFMLKDRRVDSVWLLFDDMLDRK 170
             LI  Y +   ++ A + F  M  +G   +      ++  +   RR+D    LF  M D +
Sbjct:   259 LIMGYCQRKDLDSAFKVFNEMPLKGCRRNEVAYTHLIHGLCVARRIDEAMDLFVKMKDDE 318

Query:   171 ICPNVATFNILINVSCVEGKLKKAGYLLRKMEESGYVPNIVTYNTLLNWYCKKGRYKAAF 230
               P V T+ +LI   C   +  +A  L+++MEE+G  PNI TY  L++  C + +++ A 
Sbjct:   319 CFPTVRTYTVLIKSLCGSERKSEALNLVKEMEETGIKPNIHTYTVLIDSLCSQCKFEKAR 378

Query:   231 KLIDCMASKGIEADVCTYNMFIDDLCRNNRSAKGYLLLKNMRKRMITPNEVTYNTLINGF 290
             +L+  M  KG+  +V TYN  I+  C+         +++ M  R ++PN  TYN LI G+
Sbjct:   379 ELLGQMLEKGLMPNVITYNALINGYCKRGMIEDAVDVVELMESRKLSPNTRTYNELIKGY 438

Query:   291 VKEGKIQVASRVFDEMSMLNFSPNSITYNELIDGHCCKGNFKEAFRLLAMMEEMGLRPNE 350
              K   +  A  V ++M      P+ +TYN LIDG C  GNF  A+RLL++M + GL P++
Sbjct:   439 CKSN-VHKAMGVLNKMLERKVLPDVVTYNSLIDGQCRSGNFDSAYRLLSLMNDRGLVPDQ 497

Query:   351 VSYGALLNGFCKHAKFDLARSLLERMRTNGISISCIAYTSVIDGLCKCGLLDEAMQLFNK 410
              +Y ++++  CK  + + A  L + +   G++ + + YT++IDG CK G +DEA  +  K
Sbjct:   498 WTYTSMIDSLCKSKRVEEACDLFDSLEQKGVNPNVVMYTALIDGYCKAGKVDEAHLMLEK 557

Query:   411 MFKDGLNPDLITFSVLINGFCKVGMTRKAKAVLCKMYRDGLVPNKIIYSTLIYYFCKMGK 470
             M      P+ +TF+ LI+G C  G  ++A  +  KM + GL P     + LI+   K G 
Sbjct:   558 MLSKNCLPNSLTFNALIHGLCADGKLKEATLLEEKMVKIGLQPTVSTDTILIHRLLKDGD 617

Query:   471 VTEAMKVYAVMNRNAQGSDHFTCNMLVASLCKGGKVCEAEDYVGHMKRIGVVPNSITFDC 530
                A   +  M  +    D  T    + + C+ G++ +AED +  M+  GV P+  T+  
Sbjct:   618 FDHAYSRFQQMLSSGTKPDAHTYTTFIQTYCREGRLLDAEDMMAKMRENGVSPDLFTYSS 677

Query:   531 MIDGYGTLGDGLKAFSMFDEMVKLGHHPSIFTY 563
             +I GYG LG    AF +   M   G  PS  T+
Sbjct:   678 LIKGYGDLGQTNFAFDVLKRMRDTGCEPSQHTF 710

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2039415 AT2G16880 "AT2G16880" [Arabidopsis thaliana (taxid:3702)]

 Score = 700 (251.5 bits), Expect = 3.5e-68, P = 3.5e-68
 Identities = 181/591 (30%), Positives = 294/591 (49%)

Query:    64 LVKTRMYEDAKLILRQLAQMGIGQNSVFGSLMNTYPLCNSNPS--VFDLLIRVYLREGMV 121
             L+    + DAK +L    +      S+  SL++     +  PS  +FD+ +  YL EG  
Sbjct:    88 LLSHHKFADAKSLLVSYIRTSDASLSLCNSLLHPNLHLSPPPSKALFDIALSAYLHEGKP 147

Query:   122 EYALETFQLMGFRGFNPSVYTCNMMLSFMLK---DRRVDSVWLLFDDMLDRKICPNVATF 178
               AL+ FQ M      P++ TCN +L  +++      + S   +FDDM+   +  NV TF
Sbjct:   148 HVALQIFQKMIRLKLKPNLLTCNTLLIGLVRYPSSFSISSAREVFDDMVKIGVSLNVQTF 207

Query:   179 NILINVSCVEGKLKKA-GYLLRKMEESGYVPNIVTYNTLLNWYCKKGRYKAAFKLIDCMA 237
             N+L+N  C+EGKL+ A G L R + E    P+ VTYNT+L    KKGR     +L+  M 
Sbjct:   208 NVLVNGYCLEGKLEDALGMLERMVSEFKVNPDNVTYNTILKAMSKKGRLSDLKELLLDMK 267

Query:   238 SKGIEADVCTYNMFIDDLCRNNRSAKGYLLLKNMRKRMITPNEVTYNTLINGFVKEGKIQ 297
               G+  +  TYN  +   C+     + + +++ M++  + P+  TYN LING    G ++
Sbjct:   268 KNGLVPNRVTYNNLVYGYCKLGSLKEAFQIVELMKQTNVLPDLCTYNILINGLCNAGSMR 327

Query:   298 VASRVFDEMSMLNFSPNSITYNELIDGHCCK-GNFKEAFRLLAMMEEMGLRPNEVSYGAL 356
                 + D M  L   P+ +TYN LIDG C + G   EA +L+  ME  G++ N+V++   
Sbjct:   328 EGLELMDAMKSLKLQPDVVTYNTLIDG-CFELGLSLEARKLMEQMENDGVKANQVTHNIS 386

Query:   357 LNGFCKHAKFD-LARSLLERMRTNGISISCIAYTSVIDGLCKCGLLDEAMQLFNKMFKDG 415
             L   CK  K + + R + E +  +G S   + Y ++I    K G L  A+++  +M + G
Sbjct:   387 LKWLCKEEKREAVTRKVKELVDMHGFSPDIVTYHTLIKAYLKVGDLSGALEMMREMGQKG 446

Query:   416 LNPDLITFSVLINGFCKVGMTRKAKAVLCKMYRDGLVPNKIIYSTLIYYFCKMGKVTEAM 475
             +  + IT + +++  CK     +A  +L   ++ G + +++ Y TLI  F +  KV +A+
Sbjct:   447 IKMNTITLNTILDALCKERKLDEAHNLLNSAHKRGFIVDEVTYGTLIMGFFREEKVEKAL 506

Query:   476 KVYAVMNRNAQGSDHFTCNMLVASLCKGGKVCEAEDYVGHMKRIGVVPNSITFDCMIDGY 535
             +++  M +        T N L+  LC  GK   A +    +   G++P+  TF+ +I GY
Sbjct:   507 EMWDEMKKVKITPTVSTFNSLIGGLCHHGKTELAMEKFDELAESGLLPDDSTFNSIILGY 566

Query:   536 GTLGDGLKAFSMFDEMVKLGHHPSIFTYXXXXXXXXXXXXXXEAKRFLNSLHHIPSAVDT 595
                G   KAF  ++E +K    P  +T               +A  F N+L      VDT
Sbjct:   567 CKEGRVEKAFEFYNESIKHSFKPDNYTCNILLNGLCKEGMTEKALNFFNTLIE-EREVDT 625

Query:   596 VAYNTILAETCKSGNLWEAIVLLDEMVQFNLLPDRYTYTILLAGLCRKGKV 646
             V YNT+++  CK   L EA  LL EM +  L PDR+TY   ++ L   GK+
Sbjct:   626 VTYNTMISAFCKDKKLKEAYDLLSEMEEKGLEPDRFTYNSFISLLMEDGKL 676

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2077637 AT3G06920 "AT3G06920" [Arabidopsis thaliana (taxid:3702)]

 Score = 684 (245.8 bits), Expect = 1.9e-66, P = 1.9e-66
 Identities = 184/719 (25%), Positives = 333/719 (46%)

Query:   212 TYNTLLNWYCKKGRYKAAFKLIDCMASKGIEADVCTYNMFIDDLCRNNRSAKGYLLLKNM 271
             +YN+LL    +   + A  +++  M+  G    V T    +    + N+  +GY +++ M
Sbjct:   100 SYNSLLLVMARCRNFDALDQILGEMSVAGFGPSVNTCIEMVLGCVKANKLREGYDVVQMM 159

Query:   272 RKRMITPNEVTYNTLINGFVKEGKIQVASRVFDEMSMLNFSPNSITYNELIDGHCCKGNF 331
             RK    P    Y TLI  F       +   +F +M  L + P    +  LI G   +G  
Sbjct:   160 RKFKFRPAFSAYTTLIGAFSAVNHSDMMLTLFQQMQELGYEPTVHLFTTLIRGFAKEGRV 219

Query:   332 KEAFRLLAMMEEMGLRPNEVSYGALLNGFCKHAKFDLARSLLERMRTNGISISCIAYTSV 391
               A  LL  M+   L  + V Y   ++ F K  K D+A      +  NG+    + YTS+
Sbjct:   220 DSALSLLDEMKSSSLDADIVLYNVCIDSFGKVGKVDMAWKFFHEIEANGLKPDEVTYTSM 279

Query:   392 IDGLCKCGLLDEAMQLFNKMFKDGLNPDLITFSVLINGFCKVGMTRKAKAVLCKMYRDGL 451
             I  LCK   LDEA+++F  + K+   P    ++ +I G+   G   +A ++L +    G 
Sbjct:   280 IGVLCKANRLDEAVEMFEHLEKNRRVPCTYAYNTMIMGYGSAGKFDEAYSLLERQRAKGS 339

Query:   452 VPNKIIYSTLIYYFCKMGKVTEAMKVYAVMNRNAQGSDHFTCNMLVASLCKGGKVCEAED 511
             +P+ I Y+ ++    KMGKV EA+KV+  M ++A   +  T N+L+  LC+ GK+  A +
Sbjct:   340 IPSVIAYNCILTCLRKMGKVDEALKVFEEMKKDA-APNLSTYNILIDMLCRAGKLDTAFE 398

Query:   512 YVGHMKRIGVVPNSITFDCMIDGYGTLGDGLKAFSMFDEMVKLGHHPSIFTYXXXXXXXX 571
                 M++ G+ PN  T + M+D         +A +MF+EM      P   T+        
Sbjct:   399 LRDSMQKAGLFPNVRTVNIMVDRLCKSQKLDEACAMFEEMDYKVCTPDEITFCSLIDGLG 458

Query:   572 XXXXXXEAKRFLNSLHHIPSAVDTVAYNTILAETCKSGNLWEAIVLLDEMVQFNLLPDRY 631
                   +A +    +       +++ Y +++      G   +   +  +M+  N  PD  
Sbjct:   459 KVGRVDDAYKVYEKMLDSDCRTNSIVYTSLIKNFFNHGRKEDGHKIYKDMINQNCSPDLQ 518

Query:   632 TYTILLAGLCRKGKVVSALLFFEKVVSKRTFSPNNVMFTCLVDGLFKAGQSKAAMHISKI 691
                  +  + + G+       FE++ ++R F P+   ++ L+ GL KAG +     +   
Sbjct:   519 LLNTYMDCMFKAGEPEKGRAMFEEIKARR-FVPDARSYSILIHGLIKAGFANETYELFYS 577

Query:   692 MDKEGVYPDTIAFNAVMDGFSRMGNMMMANDLLSTMRSRKLCPSLATYNILLHGYSKKKD 751
             M ++G   DT A+N V+DGF + G +  A  LL  M+++   P++ TY  ++ G +K   
Sbjct:   578 MKEQGCVLDTRAYNIVIDGFCKCGKVNKAYQLLEEMKTKGFEPTVVTYGSVIDGLAKIDR 637

Query:   752 LLMCSMLLNTMKMEGLLPDKLTCHSLILGFCETGMLEVGFKFLKKMIAEGTMVDCFTFNV 811
             L    ML    K + +  + +   SLI GF + G ++  +  L++++ +G   + +T+N 
Sbjct:   638 LDEAYMLFEEAKSKRIELNVVIYSSLIDGFGKVGRIDEAYLILEELMQKGLTPNLYTWNS 697

Query:   812 LMRKCCEAGEMGKAFDLFNIMNMLGVVPDTNTQDAIIMGLKRIAAFQESHFVLRGMAEKG 871
             L+    +A E+ +A   F  M  L   P+  T   +I GL ++  F ++    + M ++G
Sbjct:   698 LLDALVKAEEINEALVCFQSMKELKCTPNQVTYGILINGLCKVRKFNKAFVFWQEMQKQG 757

Query:   872 LTPKCTQYITLINGMCRVGNFQGAFKLKDEMEALGISSSDVAESAMVRGLAHCGKVEEA 930
             + P    Y T+I+G+ + GN   A  L D  +A G        +AM+ GL++  +  +A
Sbjct:   758 MKPSTISYTTMISGLAKAGNIAEAGALFDRFKANGGVPDSACYNAMIEGLSNGNRAMDA 816

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9LVQ5	PP432_ARATH	No assigned EC number	0.5712	0.8901	0.9835	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	AT5G55840	pentatricopeptide (PPR) repeat-containing protein; pentatricopeptide (PPR) repeat-containing protein; LOCATED IN- cellular_component unknown; EXPRESSED IN- 23 plant structures; EXPRESSED DURING- 13 growth stages; CONTAINS InterPro DOMAIN/s- Pentatricopeptide repeat (InterPro-IPR002885), Ankyrin (InterPro-IPR002110); BEST Arabidopsis thaliana protein match is- pentatricopeptide (PPR) repeat-containing protein (TAIR-AT1G62910.1); Has 36356 Blast hits to 6044 proteins in 186 species- Archae - 4; Bacteria - 16; Metazoa - 1152; Fungi - 851; Plants - 32356; Viruses - 0; Other Eukaryotes - 19 [...] (1274 aa)
		(Arabidopsis thaliana)
Predicted Functional Partners:
	AT2G28780	unknown protein; unknown protein; INVOLVED IN- biological_process unknown; LOCATED IN- mitochon [...] (796 aa)							•		0.649
	SRp34a	SRp34a (Ser/Arg-rich protein 34a); RNA binding / nucleic acid binding / nucleotide binding; Ser [...] (300 aa)							•		0.623
	AT5G66050	unknown protein; LOCATED IN- chloroplast; EXPRESSED IN- 24 plant structures; EXPRESSED DURING- [...] (340 aa)							•		0.599
	AT5G27810	sequence-specific DNA binding / transcription factor; sequence-specific DNA binding / transcrip [...] (119 aa)							•		0.599
	AT4G22820	zinc finger (AN1-like) family protein; zinc finger (AN1-like) family protein; FUNCTIONS IN- DNA [...] (176 aa)							•		0.599
	AT4G17450	transposable element gene; copia-like retrotransposon family, has a 1.4e-306 P-value blast matc [...] (1499 aa)							•		0.599
	AT3G10750	unknown protein; FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unkn [...] (299 aa)							•		0.599
	AT3G01210	nucleic acid binding / oxidoreductase; nucleic acid binding / oxidoreductase; FUNCTIONS IN- oxi [...] (249 aa)							•		0.599
	AT2G46260	BTB/POZ domain-containing protein; BTB/POZ domain-containing protein; FUNCTIONS IN- protein bin [...] (561 aa)							•		0.599
	AT1G66790	unknown protein; unknown protein; FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biolog [...] (60 aa)							•		0.599

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	1211
PLN03218	1060	PLN03218, PLN03218, maturation of RBCL 1; Provisio	2e-34
PLN03218	1060	PLN03218, PLN03218, maturation of RBCL 1; Provisio	1e-30
PLN03077	857	PLN03077, PLN03077, Protein ECB2; Provisional	3e-26
PLN03218	1060	PLN03218, PLN03218, maturation of RBCL 1; Provisio	4e-26
PLN03077	857	PLN03077, PLN03077, Protein ECB2; Provisional	6e-24
PLN03218	1060	PLN03218, PLN03218, maturation of RBCL 1; Provisio	5e-23
PLN03081	697	PLN03081, PLN03081, pentatricopeptide (PPR) repeat	9e-20
PLN03077	857	PLN03077, PLN03077, Protein ECB2; Provisional	7e-18
PLN03218	1060	PLN03218, PLN03218, maturation of RBCL 1; Provisio	1e-17
PLN03081	697	PLN03081, PLN03081, pentatricopeptide (PPR) repeat	1e-16
pfam13041	50	pfam13041, PPR_2, PPR repeat family	6e-16
pfam13041	50	pfam13041, PPR_2, PPR repeat family	7e-16
pfam13041	50	pfam13041, PPR_2, PPR repeat family	3e-15
pfam13041	50	pfam13041, PPR_2, PPR repeat family	3e-15
pfam13041	50	pfam13041, PPR_2, PPR repeat family	3e-15
PLN03081	697	PLN03081, PLN03081, pentatricopeptide (PPR) repeat	9e-15
PLN03077	857	PLN03077, PLN03077, Protein ECB2; Provisional	1e-14
PLN03218	1060	PLN03218, PLN03218, maturation of RBCL 1; Provisio	2e-14
pfam14377	105	pfam14377, DUF4414, Domain of unknown function (DU	1e-13
pfam13041	50	pfam13041, PPR_2, PPR repeat family	7e-13
pfam13041	50	pfam13041, PPR_2, PPR repeat family	7e-13
pfam13041	50	pfam13041, PPR_2, PPR repeat family	1e-12
PLN03077	857	PLN03077, PLN03077, Protein ECB2; Provisional	2e-12
PLN03081	697	PLN03081, PLN03081, pentatricopeptide (PPR) repeat	5e-12
pfam13041	50	pfam13041, PPR_2, PPR repeat family	3e-11
PLN03081	697	PLN03081, PLN03081, pentatricopeptide (PPR) repeat	4e-11
pfam13041	50	pfam13041, PPR_2, PPR repeat family	4e-11
pfam13041	50	pfam13041, PPR_2, PPR repeat family	1e-10
PLN03081	697	PLN03081, PLN03081, pentatricopeptide (PPR) repeat	2e-10
pfam13041	50	pfam13041, PPR_2, PPR repeat family	2e-10
pfam14377	105	pfam14377, DUF4414, Domain of unknown function (DU	2e-10
pfam13041	50	pfam13041, PPR_2, PPR repeat family	4e-10
pfam12854	34	pfam12854, PPR_1, PPR repeat	5e-09
pfam12854	34	pfam12854, PPR_1, PPR repeat	1e-08
pfam13041	50	pfam13041, PPR_2, PPR repeat family	6e-08
PLN03077	857	PLN03077, PLN03077, Protein ECB2; Provisional	7e-08
pfam12854	34	pfam12854, PPR_1, PPR repeat	9e-08
pfam13041	50	pfam13041, PPR_2, PPR repeat family	1e-07
pfam13041	50	pfam13041, PPR_2, PPR repeat family	1e-07
pfam12854	34	pfam12854, PPR_1, PPR repeat	1e-07
pfam13041	50	pfam13041, PPR_2, PPR repeat family	2e-07
pfam12854	34	pfam12854, PPR_1, PPR repeat	7e-07
pfam13041	50	pfam13041, PPR_2, PPR repeat family	9e-07
pfam13041	50	pfam13041, PPR_2, PPR repeat family	1e-06
pfam13041	50	pfam13041, PPR_2, PPR repeat family	1e-06
pfam12854	34	pfam12854, PPR_1, PPR repeat	3e-06
pfam13041	50	pfam13041, PPR_2, PPR repeat family	6e-06
pfam12854	34	pfam12854, PPR_1, PPR repeat	1e-05
pfam01535	31	pfam01535, PPR, PPR repeat	1e-05
pfam13041	50	pfam13041, PPR_2, PPR repeat family	2e-05
TIGR00756	35	TIGR00756, PPR, pentatricopeptide repeat domain (P	2e-05
TIGR00756	35	TIGR00756, PPR, pentatricopeptide repeat domain (P	3e-05
TIGR00756	35	TIGR00756, PPR, pentatricopeptide repeat domain (P	3e-05
TIGR00756	35	TIGR00756, PPR, pentatricopeptide repeat domain (P	5e-05
pfam01535	31	pfam01535, PPR, PPR repeat	7e-05
pfam12854	34	pfam12854, PPR_1, PPR repeat	8e-05
pfam12854	34	pfam12854, PPR_1, PPR repeat	1e-04
pfam01535	31	pfam01535, PPR, PPR repeat	1e-04
TIGR00756	35	TIGR00756, PPR, pentatricopeptide repeat domain (P	1e-04
pfam12854	34	pfam12854, PPR_1, PPR repeat	3e-04
pfam12854	34	pfam12854, PPR_1, PPR repeat	3e-04
pfam12854	34	pfam12854, PPR_1, PPR repeat	4e-04
pfam12854	34	pfam12854, PPR_1, PPR repeat	5e-04
pfam12854	34	pfam12854, PPR_1, PPR repeat	5e-04
TIGR00756	35	TIGR00756, PPR, pentatricopeptide repeat domain (P	5e-04
TIGR00756	35	TIGR00756, PPR, pentatricopeptide repeat domain (P	5e-04
pfam01535	31	pfam01535, PPR, PPR repeat	6e-04
pfam01535	31	pfam01535, PPR, PPR repeat	8e-04
TIGR00756	35	TIGR00756, PPR, pentatricopeptide repeat domain (P	0.001
PLN03081	697	PLN03081, PLN03081, pentatricopeptide (PPR) repeat	0.002
pfam13041	50	pfam13041, PPR_2, PPR repeat family	0.002
TIGR00756	35	TIGR00756, PPR, pentatricopeptide repeat domain (P	0.002
TIGR00756	35	TIGR00756, PPR, pentatricopeptide repeat domain (P	0.002
pfam01535	31	pfam01535, PPR, PPR repeat	0.003
pfam01535	31	pfam01535, PPR, PPR repeat	0.003
pfam12854	34	pfam12854, PPR_1, PPR repeat	0.004

>gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional

 Score =  142 bits (360), Expect = 2e-34
 Identities = 104/455 (22%), Positives = 191/455 (41%), Gaps = 66/455 (14%)

Query: 150 MLKDRRV-DSVWLLFD----DMLDR---------KIC------------------PNVAT 177
           +L+D R+ D + LL D     +LD          K C                  P ++T
Sbjct: 380 LLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRNPTLST 439

Query: 178 FNILINVSCVEGKLKKAGYLLRKMEESGYVPNIVTYNTLLNWYCKKGRYKAAFKLIDCMA 237
           FN+L++V      +  A  +LR ++E+G   +   Y TL++   K G+  A F++   M 
Sbjct: 440 FNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMV 499

Query: 238 SKGIEADVCTYNMFIDDLCRNNRSAKGYLLLKNMRKRMITPNEVTYNTLINGFVKEGKIQ 297
           + G+EA+V T+   ID   R  + AK +     MR + + P+ V +N LI+   + G + 
Sbjct: 500 NAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVD 559

Query: 298 VASRVFDEMSMLNFSPNSITYNELIDGHCCKGNFKEAFRLLAMMEEMGLRPNEVSYGALL 357
            A  V  EM                                   E   + P+ ++ GAL+
Sbjct: 560 RAFDVLAEMKA---------------------------------ETHPIDPDHITVGALM 586

Query: 358 NGFCKHAKFDLARSLLERMRTNGISISCIAYTSVIDGLCKCGLLDEAMQLFNKMFKDGLN 417
                  + D A+ + + +    I  +   YT  ++   + G  D A+ +++ M K G+ 
Sbjct: 587 KACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVK 646

Query: 418 PDLITFSVLINGFCKVGMTRKAKAVLCKMYRDGLVPNKIIYSTLIYYFCKMGKVTEAMKV 477
           PD + FS L++     G   KA  +L    + G+    + YS+L+          +A+++
Sbjct: 647 PDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALEL 706

Query: 478 YAVMNRNAQGSDHFTCNMLVASLCKGGKVCEAEDYVGHMKRIGVVPNSITFDCMIDGYGT 537
           Y  +          T N L+ +LC+G ++ +A + +  MKR+G+ PN+IT+  ++     
Sbjct: 707 YEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASER 766

Query: 538 LGDGLKAFSMFDEMVKLGHHPSIFTYGSLLKGLCK 572
             D      +  +  + G  P++     +  GLC 
Sbjct: 767 KDDADVGLDLLSQAKEDGIKPNLVMCRCIT-GLCL 800

Length = 1060

>gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional

 Score =  131 bits (330), Expect = 1e-30
 Identities = 100/390 (25%), Positives = 160/390 (41%), Gaps = 52/390 (13%)

Query: 327 CK--GNFKEAFRLLAMMEEMGLRPNEVSYGALLNGFCKHAK-FDLARSLLERMRTNGISI 383
           CK     KEAFR   ++      P   ++  L++  C  ++  D A  +L  ++  G+  
Sbjct: 416 CKKQRAVKEAFRFAKLIRN----PTLSTFNMLMS-VCASSQDIDGALRVLRLVQEAGLKA 470

Query: 384 SCIAYTSVIDGLCKCGLLDEAMQLFNKMFKDGLNPDLITFSVLINGFCKVGMTRKAKAVL 443
            C  YT++I    K G +D   ++F++M   G+  ++ TF  LI+G  + G   KA    
Sbjct: 471 DCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAY 530

Query: 444 CKMYRDGLVPNKIIYSTLIYYFCKMGKVTEAMKVYAVMNRNAQ--GSDHFTCNMLVASLC 501
             M    + P++++++ LI    + G V  A  V A M         DH T   L+ +  
Sbjct: 531 GIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACA 590

Query: 502 KGGKVCEAE-------------------------------DYV----GHMKRIGVVPNSI 526
             G+V  A+                               D+       MK+ GV P+ +
Sbjct: 591 NAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEV 650

Query: 527 TFDCMIDGYGTLGDGLKAFSMFDEMVKLGHHPSIFTYGSLLKGLCKGGNLKEAKRFLNSL 586
            F  ++D  G  GD  KAF +  +  K G      +Y SL+ G C   N K  K+ L   
Sbjct: 651 FFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLM-GAC--SNAKNWKKALELY 707

Query: 587 HHIPSA--VDTVA-YNTILAETCKSGNLWEAIVLLDEMVQFNLLPDRYTYTILLAGLCRK 643
             I S     TV+  N ++   C+   L +A+ +L EM +  L P+  TY+ILL    RK
Sbjct: 708 EDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERK 767

Query: 644 GKVVSALLFFEKVVSKRTFSPNNVMFTCLV 673
                 L    +   +    PN VM  C+ 
Sbjct: 768 DDADVGLDLLSQ-AKEDGIKPNLVMCRCIT 796

Length = 1060

>gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional

 Score =  116 bits (291), Expect = 3e-26
 Identities = 135/599 (22%), Positives = 242/599 (40%), Gaps = 80/599 (13%)

Query: 189 GKLKKAGYLLRKMEESGYVPNIVTYNTLLNWYCKKGRYKAAFKLIDCMASKGIEADVCTY 248
           G+L  A Y+  KM E     ++ ++N L+  Y K G +  A  L   M   G+  DV T+
Sbjct: 135 GELVHAWYVFGKMPER----DLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTF 190

Query: 249 NMFIDDLCRNNRSAKGYLLLKNMRKRMITPNEVTY---------NTLINGFVKEGKIQVA 299
              +       R+  G   L   R R +  + V +         N LI  +VK G +  A
Sbjct: 191 PCVL-------RTCGGIPDLA--RGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSA 241

Query: 300 SRVFDEMSMLNFSPNSITYNELIDGHCCKGNFKEAFRLLAMMEEMGLRPN---------- 349
             VFD M   +     I++N +I G+   G   E   L   M E+ + P+          
Sbjct: 242 RLVFDRMPRRD----CISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISA 297

Query: 350 -----EVSYGALLNGFCKHAKFDL--------------------ARSLLERMRTNGISIS 384
                +   G  ++G+     F +                    A  +  RM T      
Sbjct: 298 CELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDA--- 354

Query: 385 CIAYTSVIDGLCKCGLLDEAMQLFNKMFKDGLNPDLITFSVLINGFCKVGMTRKAKAVLC 444
            +++T++I G  K GL D+A++ +  M +D ++PD IT + +++    +G       +  
Sbjct: 355 -VSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHE 413

Query: 445 KMYRDGLVPNKIIYSTLIYYFCKMGKVTEAMKVYAVMNRNAQGSDHFTCNMLVASLCKGG 504
              R GL+   ++ + LI  + K   + +A++V+  +       D  +   ++A L    
Sbjct: 414 LAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEK----DVISWTSIIAGLRLNN 469

Query: 505 KVCEAEDYVGHMKRIGVVPNSITFDCMIDGYGTLGDGLKAFSMFDEMVKLGHHPSIFTYG 564
           +  EA  +   M  + + PNS+T    +     +G  +    +   +++ G     F   
Sbjct: 470 RCFEALIFFRQML-LTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPN 528

Query: 565 SLLKGLCKGGNLKEAKRFLNSLHHIPSAVDTVAYNTILAETCKSGNLWEAIVLLDEMVQF 624
           +LL    + G +  A    NS        D V++N +L      G    A+ L + MV+ 
Sbjct: 529 ALLDLYVRCGRMNYAWNQFNS-----HEKDVVSWNILLTGYVAHGKGSMAVELFNRMVES 583

Query: 625 NLLPDRYTYTILLAGLCRKGKVVSALLFFEKVVSKRTFSPNNVMFTCLVDGLFKAGQSKA 684
            + PD  T+  LL    R G V   L +F  +  K + +PN   + C+VD L +AG+   
Sbjct: 584 GVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTE 643

Query: 685 AMHISKIMDKEGVYPDTIAFNAVMDGFSRMGNMMMANDLLSTMRSRKLCPSLATYNILL 743
           A      ++K  + PD   + A+++      ++ +    L+     +L P+   Y ILL
Sbjct: 644 AY---NFINKMPITPDPAVWGALLNACRIHRHVELGE--LAAQHIFELDPNSVGYYILL 697

Length = 857

>gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional

 Score =  116 bits (291), Expect = 4e-26
 Identities = 98/467 (20%), Positives = 186/467 (39%), Gaps = 109/467 (23%)

Query: 597  AYNTILAETCKSGNLWEAIVLLDEMVQFNLL----------------------------- 627
            AYN +L    + G + + I LL++M +  LL                             
Sbjct: 376  AYNRLL----RDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKL 431

Query: 628  ---PDRYTYTILLAGLCRKGKVVSALLFFEKVVSKRTFSPNNVMFTCLVDGLFKAGQSKA 684
               P   T+ +L++ +C   + +   L   ++V +     +  ++T L+    K+G+  A
Sbjct: 432  IRNPTLSTFNMLMS-VCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDA 490

Query: 685  AMHISKIMDKEGVYPDTIAFNAVMDGFSRMGNMMMANDLLSTMRSRKLCPSLATYNILLH 744
               +   M   GV  +   F A++DG +R G +  A      MRS+ +            
Sbjct: 491  MFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNV------------ 538

Query: 745  GYSKKKDLLMCSMLLNTMKMEGLLPDKLTCHSLILGFCETGMLEVGFKFLKKMIAEGTMV 804
                                    PD++  ++LI    ++G ++  F  L +M AE   +
Sbjct: 539  -----------------------KPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPI 575

Query: 805  --DCFTFNVLMRKCCEAGEMGKAFDLFNIMNMLGVVPDTNTQDAIIMGLKRIAAFQESHF 862
              D  T   LM+ C  AG++ +A +++ +++   +                         
Sbjct: 576  DPDHITVGALMKACANAGQVDRAKEVYQMIHEYNI------------------------- 610

Query: 863  VLRGMAEKGLTPKCTQYITLINGMCRVGNFQGAFKLKDEMEALGISSSDVAESAMVRGLA 922
                   KG TP+   Y   +N   + G++  A  + D+M+  G+   +V  SA+V    
Sbjct: 611  -------KG-TPEV--YTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAG 660

Query: 923  HCGKVEEAMLVLNRMLRMRLVPTIATFTTLIHKFCKEAKFVDALKLKGTMELSGVKLDVV 982
            H G +++A  +L    +  +     ++++L+        +  AL+L   ++   ++  V 
Sbjct: 661  HAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVS 720

Query: 983  SYNVLISGLCANGDVMPAFELYEEMKHKGLCPNSTTYSVLIDAISKK 1029
            + N LI+ LC    +  A E+  EMK  GLCPN+ TYS+L+ A  +K
Sbjct: 721  TMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERK 767

Length = 1060

>gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional

 Score =  108 bits (272), Expect = 6e-24
 Identities = 147/666 (22%), Positives = 265/666 (39%), Gaps = 116/666 (17%)

Query: 214 NTLLNWYCKKGRYKAAFKLIDCMASKGIEADVCTYNMFIDDLCRNNRSA-KGYLLLKNMR 272
           N+ L   C  G+ + A KL++ M    +  D   Y      LC   R+  +G  +     
Sbjct: 55  NSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFR-LCEWKRAVEEGSRVCSRAL 113

Query: 273 KRMITPNEVTYNTLINGFVKEGKIQVASRVFDEMSMLN-FSPNSITYNELIDGHCCKGNF 331
               +      N +++ FV+ G++  A  VF +M   + FS     +N L+ G+   G F
Sbjct: 114 SSHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPERDLFS-----WNVLVGGYAKAGYF 168

Query: 332 KEAFRLLAMMEEMGLRPNE--------------------------VSYG---------AL 356
            EA  L   M   G+RP+                           V +G         AL
Sbjct: 169 DEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNAL 228

Query: 357 LNGFCKHAKFDLARSLLERMRTNGISISCIAYTSVIDGLCKCGLLDEAMQLFNKMFKDGL 416
           +  + K      AR + +RM        CI++ ++I G  + G   E ++LF  M +  +
Sbjct: 229 ITMYVKCGDVVSARLVFDRMPRR----DCISWNAMISGYFENGECLEGLELFFTMRELSV 284

Query: 417 NPDLITFSVLINGFCKVGMTRKAKAVLCKMYRDGLVPNKIIYSTLIYYFCKMGKVTEAMK 476
           +PDL+T + +I+    +G  R  + +   + + G   +  + ++LI  +  +G   EA K
Sbjct: 285 DPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEK 344

Query: 477 VYAVMNRNAQGSDHFTCNMLVASLCKGGKVCEAEDYVGHMKRIGVVPNSITFDCMIDGYG 536
           V++ M       D  +   +++   K G   +A +    M++  V P+ IT   ++    
Sbjct: 345 VFSRMETK----DAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACA 400

Query: 537 TLGDGLKAFSMFDEMVKLGHHPSIFTYGSLLKGLCKGGNLKEAKRFLNSLHHIPSAVDTV 596
            LGD        D  VKL H                   L E K  ++ +         V
Sbjct: 401 CLGD-------LDVGVKL-H------------------ELAERKGLISYV---------V 425

Query: 597 AYNTILAETCKSGNLWEAIVLLDEMVQFNLLPDRYTYTILLAGLCRKGKVVSALLFFEKV 656
             N ++    K   + +A+ +   + + +++    ++T ++AGL    +   AL+FF ++
Sbjct: 426 VANALIEMYSKCKCIDKALEVFHNIPEKDVI----SWTSIIAGLRLNNRCFEALIFFRQM 481

Query: 657 VSKRTFSPNNVMFTCLVDGLFKAGQSKAAMHISKIMDKEGVYPDTIAFNAVMDGFSRMGN 716
               T  PN+V     +    + G       I   + + G+  D    NA++D + R G 
Sbjct: 482 --LLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGR 539

Query: 717 MMMANDLLSTMRSRKLCPSLATYNILLHGYSKKKDLLMCSMLLNTMKMEGLLPDKLTCHS 776
           M  A    +   S +    + ++NILL GY       M   L N M   G+ PD++T  S
Sbjct: 540 MNYA---WNQFNSHE--KDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFIS 594

Query: 777 LILGFCETGMLEVGFKFLKKMIAE----------GTMVDCFTFNVLMRKCCEAGEMGKAF 826
           L+     +GM+  G ++   M  +            +VD     +L R    AG++ +A+
Sbjct: 595 LLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVD-----LLGR----AGKLTEAY 645

Query: 827 DLFNIM 832
           +  N M
Sbjct: 646 NFINKM 651

Length = 857

>gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional

 Score =  106 bits (265), Expect = 5e-23
 Identities = 85/381 (22%), Positives = 172/381 (45%), Gaps = 21/381 (5%)

Query: 91  FGSLMNTYPLCNSNPSVFDLLIRVYLREGMVEYALETFQLMGFRGFNPSVYTCNMMLSFM 150
           F  L+      N   S F++L+ V      ++ AL   +L+   G          ++S  
Sbjct: 428 FAKLIR-----NPTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTC 482

Query: 151 LKDRRVDSVWLLFDDMLDRKICPNVATFNILINVSCVEGKLKKA----GYLLRKMEESGY 206
            K  +VD+++ +F +M++  +  NV TF  LI+     G++ KA    G +  K  +   
Sbjct: 483 AKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVK--- 539

Query: 207 VPNIVTYNTLLNWYCKKGRYKAAFKLIDCMA--SKGIEADVCTYNMFIDDLCRNNRSAKG 264
            P+ V +N L++   + G    AF ++  M   +  I+ D  T    +       +  + 
Sbjct: 540 -PDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRA 598

Query: 265 YLLLKNMRKRMITPNEVTYNTLINGFVKEGKIQVASRVFDEMSMLNFSPNSITYNELID- 323
             + + + +  I      Y   +N   ++G    A  ++D+M      P+ + ++ L+D 
Sbjct: 599 KEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDV 658

Query: 324 -GHCCKGNFKEAFRLLAMMEEMGLRPNEVSYGALLNGFCKHAK-FDLARSLLERMRTNGI 381
            GH   G+  +AF +L    + G++   VSY +L+ G C +AK +  A  L E +++  +
Sbjct: 659 AGHA--GDLDKAFEILQDARKQGIKLGTVSYSSLM-GACSNAKNWKKALELYEDIKSIKL 715

Query: 382 SISCIAYTSVIDGLCKCGLLDEAMQLFNKMFKDGLNPDLITFSVLINGFCKVGMTRKAKA 441
             +     ++I  LC+   L +A+++ ++M + GL P+ IT+S+L+    +         
Sbjct: 716 RPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLD 775

Query: 442 VLCKMYRDGLVPNKIIYSTLI 462
           +L +   DG+ PN ++   + 
Sbjct: 776 LLSQAKEDGIKPNLVMCRCIT 796

Length = 1060

>gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional

 Score = 94.9 bits (236), Expect = 9e-20
 Identities = 80/366 (21%), Positives = 157/366 (42%), Gaps = 17/366 (4%)

Query: 224 GRYKAAFKLIDCMASKG-IEADVCTYNMFIDDLC--RNNRSAKGYLLLKNMRKRMITPNE 280
           GR++ A +L + + +         TY+  ++     ++ R  K   +  ++      P++
Sbjct: 101 GRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKA--VYWHVESSGFEPDQ 158

Query: 281 VTYNTLINGFVKEGKIQVASRVFDEMSMLNFSPNSITYNELIDGHCCKGNFKEAFRLLAM 340
              N ++   VK G +  A R+FDEM       N  ++  +I G    GN++EAF L   
Sbjct: 159 YMMNRVLLMHVKCGMLIDARRLFDEMP----ERNLASWGTIIGGLVDAGNYREAFALFRE 214

Query: 341 MEEMGLRPNEVSYGALLNGFCKHAKFDLARSLLERMRTNGISISCIAYTSVIDGLCKCGL 400
           M E G      ++  +L            + L   +   G+        ++ID   KCG 
Sbjct: 215 MWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGD 274

Query: 401 LDEAMQLFNKMFKDGLNPDLITFSVLINGFCKVGMTRKAKAVLCKMYRDGLVPNKIIYST 460
           +++A  +F+ M +       + ++ ++ G+   G + +A  +  +M   G+  ++  +S 
Sbjct: 275 IEDARCVFDGMPEK----TTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSI 330

Query: 461 LIYYFCKMGKVTEAMKVYAVMNRNAQGSDHFTCNMLVASLCKGGKVCEAEDYVGHMKRIG 520
           +I  F ++  +  A + +A + R     D      LV    K G++ +A +    M R  
Sbjct: 331 MIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR-- 388

Query: 521 VVPNSITFDCMIDGYGTLGDGLKAFSMFDEMVKLGHHPSIFTYGSLLKGLCKGGNLKEAK 580
              N I+++ +I GYG  G G KA  MF+ M+  G  P+  T+ ++L      G  ++  
Sbjct: 389 --KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGW 446

Query: 581 RFLNSL 586
               S+
Sbjct: 447 EIFQSM 452

Length = 697

>gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional

 Score = 89.1 bits (221), Expect = 7e-18
 Identities = 136/671 (20%), Positives = 252/671 (37%), Gaps = 121/671 (18%)

Query: 375  RMRTNGISISCIAYTSVID------GLCKCGLLDEAMQLFNKMFKDGLNPDLITFSVLIN 428
            R R+ G+S++  + +S  D       LC  G L++A++L   M +  +  D   +  L  
Sbjct: 35   RKRSRGLSVAASSSSSTHDSNSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFR 94

Query: 429  GFCK------VGMTRKAKAVLCKMYRDGLVPNKIIYSTLIYYFCKMGKVTEAMKVYAVMN 482
              C+       G  R     L      G+     + + ++  F + G++  A  V+  M 
Sbjct: 95   -LCEWKRAVEEGS-RVCSRALSSHPSLGVR----LGNAMLSMFVRFGELVHAWYVFGKMP 148

Query: 483  RNAQGSDHFTCNMLVASLCKGGKVCEAEDYVGHMKRIGVVPNSITFDCMIDGYGTLGDGL 542
                  D F+ N+LV    K G   EA      M   GV P+  TF C++   G + D  
Sbjct: 149  ER----DLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLA 204

Query: 543  KAFSMFDEMVKLGHHPSIFTYGSLLKGLCKGGNLKEAKRFLNSLHHIPSAVDTVAYNTIL 602
            +   +   +V+ G    +    +L+    K G++  A+   + +       D +++N ++
Sbjct: 205  RGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRM----PRRDCISWNAMI 260

Query: 603  AETCKSGNLWEAIVLLDEMVQFNLLPDRYTYTILLAGLCRKGKVVSALLFFEKVVSKRTF 662
            +   ++G   E + L   M + ++ PD  T T           V+SA     +++     
Sbjct: 261  SGYFENGECLEGLELFFTMRELSVDPDLMTIT----------SVISAC----ELLGDERL 306

Query: 663  SPNNVMFTCLVDGLFKAGQSKAAMHISKIMDKEGVYPDTIAFNAVMDGFSRMGNMMMAND 722
                                   MH   +  K G   D    N+++  +  +G+   A  
Sbjct: 307  GRE--------------------MHGYVV--KTGFAVDVSVCNSLIQMYLSLGSWGEAEK 344

Query: 723  LLSTMRSRKLCPSLATYNILLHGYSK----KKDLLMCSMLLNTMKMEGLLPDKLTCHSLI 778
            + S M          ++  ++ GY K     K L   ++    M+ + + PD++T  S +
Sbjct: 345  VFSRME----TKDAVSWTAMISGYEKNGLPDKALETYAL----MEQDNVSPDEITIAS-V 395

Query: 779  LGFCET-GMLEVGFKFLKKMIAEGTMVDCFTFNVLMRKCCEAGEMGKAFDLFNIMNMLGV 837
            L  C   G L+VG K  +    +G +      N L+    +   + KA ++F+ +    V
Sbjct: 396  LSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDV 455

Query: 838  VPDTNTQDAIIMGLKRIAAFQESHFVLRGMAEKGLTPKCTQYITLINGMCRVGNFQGAFK 897
            +  T    +II GL+      E+    R M    L P     I  ++   R+G      +
Sbjct: 456  ISWT----SIIAGLRLNNRCFEALIFFRQMLLT-LKPNSVTLIAALSACARIGALMCGKE 510

Query: 898  LKDEMEALGISSSDVAESAMVRGLAHCGKVEEAMLVLNRMLRMRLVPTIATFTTLIHKFC 957
            +   +   GI       +A++     CG++  A                       ++F 
Sbjct: 511  IHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAW----------------------NQFN 548

Query: 958  KEAKFVDALKLKGTMELSGVKLDVVSYNVLISGLCANGDVMPAFELYEEMKHKGLCPNST 1017
               K                  DVVS+N+L++G  A+G    A EL+  M   G+ P+  
Sbjct: 549  SHEK------------------DVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEV 590

Query: 1018 TYSVLIDAISK 1028
            T+  L+ A S+
Sbjct: 591  TFISLLCACSR 601

Length = 857

>gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional

 Score = 88.8 bits (220), Expect = 1e-17
 Identities = 53/227 (23%), Positives = 101/227 (44%), Gaps = 8/227 (3%)

Query: 111 LIRVYLREGMVEYALETFQLM---GFRGFNPSVYTCNMMLSFMLKDRRVDSVWLLFDDML 167
           L++     G V+ A E +Q++     +G  P VYT  + ++   +    D    ++DDM 
Sbjct: 585 LMKACANAGQVDRAKEVYQMIHEYNIKGT-PEVYT--IAVNSCSQKGDWDFALSIYDDMK 641

Query: 168 DRKICPNVATFNILINVSCVEGKLKKAGYLLRKMEESGYVPNIVTYNTLLNWYCKKGRYK 227
            + + P+   F+ L++V+   G L KA  +L+   + G     V+Y++L+        +K
Sbjct: 642 KKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWK 701

Query: 228 AAFKLIDCMASKGIEADVCTYNMFIDDLCRNNRSAKGYLLLKNMRKRMITPNEVTYNTLI 287
            A +L + + S  +   V T N  I  LC  N+  K   +L  M++  + PN +TY+ L+
Sbjct: 702 KALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILL 761

Query: 288 NGFVKEGKIQVASRVFDEMSMLNFSPNSITYNELIDGHCCKGNFKEA 334
               ++    V   +  +       PN +    +     C   F++A
Sbjct: 762 VASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITG--LCLRRFEKA 806

Length = 1060

>gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional

 Score = 85.3 bits (211), Expect = 1e-16
 Identities = 77/364 (21%), Positives = 161/364 (44%), Gaps = 17/364 (4%)

Query: 124 ALETFQLMGFRG-FNPSVYTCNMMLSFMLKDRRVDSVWLLFDDMLDRKICPNVATFN--I 180
           ALE F+++     F     T + ++   +  + +  V  ++  +      P+    N  +
Sbjct: 106 ALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVL 165

Query: 181 LINVSCVEGKLKKAGYLLRKMEESGYVPNIVTYNTLLNWYCKKGRYKAAFKLIDCMASKG 240
           L++V C  G L  A  L  +M E     N+ ++ T++      G Y+ AF L   M   G
Sbjct: 166 LMHVKC--GMLIDARRLFDEMPER----NLASWGTIIGGLVDAGNYREAFALFREMWEDG 219

Query: 241 IEADVCTYNMFIDDLCRNNRSAKGYLLLKNMRKRMITPNEVTYNTLINGFVKEGKIQVAS 300
            +A+  T+ + +        +  G  L   + K  +  +      LI+ + K G I+ A 
Sbjct: 220 SDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDAR 279

Query: 301 RVFDEMSMLNFSPNSITYNELIDGHCCKGNFKEAFRLLAMMEEMGLRPNEVSYGALLNGF 360
            VFD M        ++ +N ++ G+   G  +EA  L   M + G+  ++ ++  ++  F
Sbjct: 280 CVFDGMP----EKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIF 335

Query: 361 CKHAKFDLARSLLERMRTNGISISCIAYTSVIDGLCKCGLLDEAMQLFNKMFKDGLNPDL 420
            + A  + A+     +   G  +  +A T+++D   K G +++A  +F++M +     +L
Sbjct: 336 SRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRK----NL 391

Query: 421 ITFSVLINGFCKVGMTRKAKAVLCKMYRDGLVPNKIIYSTLIYYFCKMGKVTEAMKVYAV 480
           I+++ LI G+   G   KA  +  +M  +G+ PN + +  ++      G   +  +++  
Sbjct: 392 ISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQS 451

Query: 481 MNRN 484
           M+ N
Sbjct: 452 MSEN 455

Length = 697

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 72.4 bits (179), Expect = 6e-16
 Identities = 25/50 (50%), Positives = 38/50 (76%)

Query: 208 PNIVTYNTLLNWYCKKGRYKAAFKLIDCMASKGIEADVCTYNMFIDDLCR 257
           P++VTYNTL++ YCKKG+ + A KL + M  +GI+ +V TY++ ID LC+
Sbjct: 1   PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 72.1 bits (178), Expect = 7e-16
 Identities = 23/50 (46%), Positives = 35/50 (70%)

Query: 313 PNSITYNELIDGHCCKGNFKEAFRLLAMMEEMGLRPNEVSYGALLNGFCK 362
           P+ +TYN LIDG+C KG  +EA +L   M++ G++PN  +Y  L++G CK
Sbjct: 1   PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 70.5 bits (174), Expect = 3e-15
 Identities = 25/49 (51%), Positives = 35/49 (71%)

Query: 278 PNEVTYNTLINGFVKEGKIQVASRVFDEMSMLNFSPNSITYNELIDGHC 326
           P+ VTYNTLI+G+ K+GK++ A ++F+EM      PN  TY+ LIDG C
Sbjct: 1   PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLC 49

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 70.5 bits (174), Expect = 3e-15
 Identities = 23/47 (48%), Positives = 37/47 (78%)

Query: 386 IAYTSVIDGLCKCGLLDEAMQLFNKMFKDGLNPDLITFSVLINGFCK 432
           + Y ++IDG CK G ++EA++LFN+M K G+ P++ T+S+LI+G CK
Sbjct: 4   VTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 70.5 bits (174), Expect = 3e-15
 Identities = 26/49 (53%), Positives = 33/49 (67%)

Query: 980  DVVSYNVLISGLCANGDVMPAFELYEEMKHKGLCPNSTTYSVLIDAISK 1028
            DVV+YN LI G C  G V  A +L+ EMK +G+ PN  TYS+LID + K
Sbjct: 2    DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional

 Score = 78.8 bits (194), Expect = 9e-15
 Identities = 84/394 (21%), Positives = 156/394 (39%), Gaps = 50/394 (12%)

Query: 201 MEESGYVPNIVTYNTLLNWYCKKGRYKAAFKLIDCMASKGIEADVCTYNMFIDDLCRNNR 260
           +E SG+ P+    N +L  + K G    A +L D M  +                     
Sbjct: 149 VESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPER--------------------- 187

Query: 261 SAKGYLLLKNMRKRMITPNEVTYNTLINGFVKEGKIQVASRVFDEMSMLNFSPNSITYNE 320
                             N  ++ T+I G V  G  + A  +F EM          T+  
Sbjct: 188 ------------------NLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVV 229

Query: 321 LIDGHCCKGNFKEAFRLLAMMEEMGLRPNEVSYGALLNGFCKHAKFDLARSLLERMRTNG 380
           ++      G+ +   +L   + + G+  +     AL++ + K    + AR + + M    
Sbjct: 230 MLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEK- 288

Query: 381 ISISCIAYTSVIDGLCKCGLLDEAMQLFNKMFKDGLNPDLITFSVLINGFCKVGMTRKAK 440
              + +A+ S++ G    G  +EA+ L+ +M   G++ D  TFS++I  F ++ +   AK
Sbjct: 289 ---TTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAK 345

Query: 441 AVLCKMYRDGLVPNKIIYST-LIYYFCKMGKVTEAMKVYAVMNRNAQGSDHFTCNMLVAS 499
                + R G  P  I+ +T L+  + K G++ +A  V+  M R     +  + N L+A 
Sbjct: 346 QAHAGLIRTGF-PLDIVANTALVDLYSKWGRMEDARNVFDRMPRK----NLISWNALIAG 400

Query: 500 LCKGGKVCEAEDYVGHMKRIGVVPNSITFDCMIDGYGTLGDGLKAFSMFDEMVK-LGHHP 558
               G+  +A +    M   GV PN +TF  ++      G   + + +F  M +     P
Sbjct: 401 YGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKP 460

Query: 559 SIFTYGSLLKGLCKGGNLKEAKRFLNSLHHIPSA 592
               Y  +++ L + G L EA   +      P+ 
Sbjct: 461 RAMHYACMIELLGREGLLDEAYAMIRRAPFKPTV 494

Length = 697

>gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional

 Score = 78.7 bits (194), Expect = 1e-14
 Identities = 128/628 (20%), Positives = 235/628 (37%), Gaps = 75/628 (11%)

Query: 319 NELIDGHCCKGNFKEAFRLLAMMEEMGLRPNEVSYGALLNGFCKHAKFDLARSLLERMRT 378
           N  +   C  G  ++A +LL  M+E+ +  +E +Y AL    C     +  R++ E  R 
Sbjct: 55  NSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFR-LC-----EWKRAVEEGSRV 108

Query: 379 NGISISCIAYTSV-------------------------------------IDGLCKCGLL 401
              ++S      V                                     + G  K G  
Sbjct: 109 CSRALSSHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYF 168

Query: 402 DEAMQLFNKMFKDGLNPDLITFSVLINGFCKVGMTRKAKAVLCKMYRDGLVPNKIIYSTL 461
           DEA+ L+++M   G+ PD+ TF  ++     +    + + V   + R G   +  + + L
Sbjct: 169 DEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNAL 228

Query: 462 IYYFCKMGKVTEAMKVYAVMNRNAQGSDHFTCNMLVASLCKGGKVCEAEDYVGHMKRIGV 521
           I  + K G V  A  V+  M R     D  + N +++   + G+  E  +    M+ + V
Sbjct: 229 ITMYVKCGDVVSARLVFDRMPR----RDCISWNAMISGYFENGECLEGLELFFTMRELSV 284

Query: 522 VPNSITFDCMIDGYGTLGDGLKAFSMFDEMVKLGHHPSIFTYGSLLKGLCKGGNLKEAKR 581
            P+ +T   +I     LGD      M   +VK G    +    SL++     G+  EA++
Sbjct: 285 DPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEK 344

Query: 582 FLNSLHHIPSAVDTVAYNTILAETCKSGNLWEAIVLLDEMVQFNLLPDRYTYTILLAGLC 641
             + +       D V++  +++   K+G   +A+     M Q N+ PD  T   +L+   
Sbjct: 345 VFSRM----ETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACA 400

Query: 642 RKGKVVSALLFFEKVVSKRTFSPNNVMFTCLVDGLFKAGQSKAAMHISKIMDKEGVYPDT 701
             G +   +   E    K       V+   L++   K      A+ +   + ++    D 
Sbjct: 401 CLGDLDVGVKLHELAERKG-LISYVVVANALIEMYSKCKCIDKALEVFHNIPEK----DV 455

Query: 702 IAFNAVMDGFSRMGNMMMANDLLSTMRSRKLCPSLATYNILLHGYSKKKDLLMCS----- 756
           I++ +++ G         A      M    L P+  T    L   + +   LMC      
Sbjct: 456 ISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACA-RIGALMCGKEIHA 513

Query: 757 -MLLNTMKMEGLLPDKLTCHSLILGFCETGMLEVGFKFLKKMIAEGTMVDCFTFNVLMRK 815
            +L   +  +G LP+ L    +  G       +  F   +K        D  ++N+L+  
Sbjct: 514 HVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQ--FNSHEK--------DVVSWNILLTG 563

Query: 816 CCEAGEMGKAFDLFNIMNMLGVVPDTNTQDAIIMGLKRIAAFQESHFVLRGMAEK-GLTP 874
               G+   A +LFN M   GV PD  T  +++    R     +       M EK  +TP
Sbjct: 564 YVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITP 623

Query: 875 KCTQYITLINGMCRVGNFQGAFKLKDEM 902
               Y  +++ + R G    A+   ++M
Sbjct: 624 NLKHYACVVDLLGRAGKLTEAYNFINKM 651

Length = 857

>gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional

 Score = 78.4 bits (193), Expect = 2e-14
 Identities = 71/301 (23%), Positives = 129/301 (42%), Gaps = 39/301 (12%)

Query: 734  PSLATYNILLHGYSKKKDLLMCSMLLNTMKMEGLLPDKLTCHSLILGFCETGMLEVGFKF 793
            P+L+T+N+L+   +  +D+     +L  ++  GL  D     +LI    ++G ++  F+ 
Sbjct: 435  PTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEV 494

Query: 794  LKKMIAEGTMVDCFTFNVLMRKCCEAGEMGKAFDLFNIMNMLGVVPDTNTQDAIIMGLKR 853
              +M+  G   +  TF  L+  C  AG++ KAF  + IM    V PD            R
Sbjct: 495  FHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPD------------R 542

Query: 854  IAAFQESHFVLRGMAEKGLTPKCTQYITLINGMCRVGNFQGAFKLKDEM--EALGISSSD 911
            +                        +  LI+   + G    AF +  EM  E   I    
Sbjct: 543  VV-----------------------FNALISACGQSGAVDRAFDVLAEMKAETHPIDPDH 579

Query: 912  VAESAMVRGLAHCGKVEEAMLVLNRMLRMRLVPTIATFTTLIHKFCKEAKFVD-ALKLKG 970
            +   A+++  A+ G+V+ A  V   +    +  T   +T  ++  C +    D AL +  
Sbjct: 580  ITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVN-SCSQKGDWDFALSIYD 638

Query: 971  TMELSGVKLDVVSYNVLISGLCANGDVMPAFELYEEMKHKGLCPNSTTYSVLIDAISKKE 1030
             M+  GVK D V ++ L+      GD+  AFE+ ++ + +G+   + +YS L+ A S  +
Sbjct: 639  DMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAK 698

Query: 1031 N 1031
            N
Sbjct: 699  N 699

Length = 1060

>gnl|CDD|222719 pfam14377, DUF4414, Domain of unknown function (DUF4414)

 Score = 67.8 bits (166), Expect = 1e-13
 Identities = 23/65 (35%), Positives = 36/65 (55%), Gaps = 2/65 (3%)

Query: 1080 NNAKIDPTFMEALPEDLLAEVLASQQA--SSIAQGLAHHGEGQPVDMDNASVIATFPADL 1137
               +I+P F+ ALP ++  EVL  ++      A+ +A  G   P +MD AS +AT P +L
Sbjct: 36   EPTEINPEFLAALPPEIREEVLQQERQERQRRAREIAAAGAATPQEMDPASFLATLPPEL 95

Query: 1138 CEEKL 1142
             +E L
Sbjct: 96   RQEVL 100

This family is frequently found on DNA binding proteins of the URE-B1 type and on ligases. Length = 105

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 64.0 bits (157), Expect = 7e-13
 Identities = 22/49 (44%), Positives = 33/49 (67%)

Query: 594 DTVAYNTILAETCKSGNLWEAIVLLDEMVQFNLLPDRYTYTILLAGLCR 642
           D V YNT++   CK G + EA+ L +EM +  + P+ YTY+IL+ GLC+
Sbjct: 2   DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 63.6 bits (156), Expect = 7e-13
 Identities = 21/50 (42%), Positives = 33/50 (66%)

Query: 523 PNSITFDCMIDGYGTLGDGLKAFSMFDEMVKLGHHPSIFTYGSLLKGLCK 572
           P+ +T++ +IDGY   G   +A  +F+EM K G  P+++TY  L+ GLCK
Sbjct: 1   PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 63.2 bits (155), Expect = 1e-12
 Identities = 20/50 (40%), Positives = 34/50 (68%)

Query: 173 PNVATFNILINVSCVEGKLKKAGYLLRKMEESGYVPNIVTYNTLLNWYCK 222
           P+V T+N LI+  C +GK+++A  L  +M++ G  PN+ TY+ L++  CK
Sbjct: 1   PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional

 Score = 71.4 bits (175), Expect = 2e-12
 Identities = 84/382 (21%), Positives = 139/382 (36%), Gaps = 60/382 (15%)

Query: 106 SVFDLLIRVYLREGMVEYALETFQLMGFRGFNPSVYTCNMMLSFMLKDRRVDSVWLLFDD 165
           SV + LI++YL  G    A + F  M  +       +   M+S   K+   D     +  
Sbjct: 324 SVCNSLIQMYLSLGSWGEAEKVFSRMETK----DAVSWTAMISGYEKNGLPDKALETYAL 379

Query: 166 MLDRKICPNVATFNILINVSCVEGKLKKAGYLLRKMEESGYVPNIVTYNTLLNWYCKKGR 225
           M    + P+  T   +++     G L     L    E  G +  +V  N L+  Y K   
Sbjct: 380 MEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKC 439

Query: 226 YKAAFKLIDCMASKGIEADVCTYNMFIDDLCRNNRSAKGYLLLKNMRKRMITPNEVTYNT 285
              A ++   +  K    DV ++   I  L  NNR  +  +  + M    + PN VT   
Sbjct: 440 IDKALEVFHNIPEK----DVISWTSIIAGLRLNNRCFEALIFFRQM-LLTLKPNSVTLIA 494

Query: 286 LIN-----GFVKEGKIQVASRVFDEMSMLNFSPNSITYNELIDGHCCKGNFKEAFRLLAM 340
            ++     G +  GK   A  +   +    F PN+     L+D +   G    A+     
Sbjct: 495 ALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNA-----LLDLYVRCGRMNYAWNQFNS 549

Query: 341 MEEMGLRPNEVSYGALLNGFCKHAKFDLARSLLERMRTNGISISCIAYTSVIDGLCKCGL 400
            E+     + VS+  LL G+  H K  +                                
Sbjct: 550 HEK-----DVVSWNILLTGYVAHGKGSM-------------------------------- 572

Query: 401 LDEAMQLFNKMFKDGLNPDLITFSVLINGFCKVGMTRKAKAVLCKMYRD-GLVPNKIIYS 459
              A++LFN+M + G+NPD +TF  L+    + GM  +       M     + PN   Y+
Sbjct: 573 ---AVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYA 629

Query: 460 TLIYYFCKMGKVTEAMKVYAVM 481
            ++    + GK+TEA      M
Sbjct: 630 CVVDLLGRAGKLTEAYNFINKM 651

Length = 857

>gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional

 Score = 69.9 bits (171), Expect = 5e-12
 Identities = 93/441 (21%), Positives = 181/441 (41%), Gaps = 33/441 (7%)

Query: 367 DLARSLLERMRTNGISISCIAYTSVIDGLCKCGLLDEAMQLF-----NKMFKDGLNPDLI 421
           +++ S   R+    I  S ++  S I+ L  CG   EA++LF        F    +    
Sbjct: 69  EVSESKDARLDDTQIRKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPAS---- 124

Query: 422 TFSVLINGFCKVGMTRKAKAVLCKMYRDGLVPNKIIYSTLIYYFCKMGKVTEAMKVYAVM 481
           T+  L+     +   R  KAV   +   G  P++ + + ++    K G + +A +++  M
Sbjct: 125 TYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEM 184

Query: 482 -NRNAQGSDHFTCNMLVASLCKGGKVCEAEDYVGHMKRIGVVPNSITFDCMIDGYGTLGD 540
             RN       +   ++  L   G   EA      M   G      TF  M+     LG 
Sbjct: 185 PERNL-----ASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGS 239

Query: 541 GLKAFSMFDEMVKLGHHPSIFTYGSLLKGLCKGGNLKEAKRFLNSLHHIPSAVDTVAYNT 600
                 +   ++K G     F   +L+    K G++++A+   + +   P    TVA+N+
Sbjct: 240 ARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGM---PEKT-TVAWNS 295

Query: 601 ILAETCKSGNLWEAIVLLDEMVQFNLLPDRYTYTILLAGLCRKGKVVSALLFFEKVVSKR 660
           +LA     G   EA+ L  EM    +  D++T++I++    R   +  A      ++ + 
Sbjct: 296 MLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLI-RT 354

Query: 661 TFSPNNVMFTCLVDGLFKAGQSKAAMHISKIMDKEGVYPDTIAFNAVMDGFSRMGNMMMA 720
            F  + V  T LVD   K G+ + A ++   M ++ +    I++NA++ G+   G    A
Sbjct: 355 GFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNL----ISWNALIAGYGNHGRGTKA 410

Query: 721 NDLLSTMRSRKLCPSLATYNILLH-----GYSKKKDLLMCSMLLNTMKMEGLLPDKLTCH 775
            ++   M +  + P+  T+  +L      G S++   +  SM  N      + P  +   
Sbjct: 411 VEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSEN----HRIKPRAMHYA 466

Query: 776 SLILGFCETGMLEVGFKFLKK 796
            +I      G+L+  +  +++
Sbjct: 467 CMIELLGREGLLDEAYAMIRR 487

Length = 697

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 59.0 bits (144), Expect = 3e-11
 Identities = 17/50 (34%), Positives = 31/50 (62%)

Query: 699 PDTIAFNAVMDGFSRMGNMMMANDLLSTMRSRKLCPSLATYNILLHGYSK 748
           PD + +N ++DG+ + G +  A  L + M+ R + P++ TY+IL+ G  K
Sbjct: 1   PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional

 Score = 67.2 bits (164), Expect = 4e-11
 Identities = 74/358 (20%), Positives = 149/358 (41%), Gaps = 17/358 (4%)

Query: 673  VDGLFKAGQSKAAMHISKIMDKEGVYP-DTIAFNAVMDGFSRMGNMMMANDLLSTMRSRK 731
            ++ L   G+ + A+ + +I++    +      ++A+++    + ++     +   + S  
Sbjct: 94   IEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSG 153

Query: 732  LCPSLATYNILLHGYSKKKDLLMCSMLLNTMKMEGLLPDK--LTCHSLILGFCETGMLEV 789
              P     N +L  + K      C ML++  ++   +P++   +  ++I G  + G    
Sbjct: 154  FEPDQYMMNRVLLMHVK------CGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYRE 207

Query: 790  GFKFLKKMIAEGTMVDCFTFNVLMRKCCEAGEMGKAFDLFNIMNMLGVVPDTNTQDAIIM 849
             F   ++M  +G+  +  TF V++R     G       L   +   GVV DT    A+I 
Sbjct: 208  AFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALID 267

Query: 850  GLKRIAAFQESHFVLRGMAEKGLTPKCTQYITLINGMCRVGNFQGAFKLKDEMEALGISS 909
               +    +++  V  GM EK        + +++ G    G  + A  L  EM   G+S 
Sbjct: 268  MYSKCGDIEDARCVFDGMPEKTTV----AWNSMLAGYALHGYSEEALCLYYEMRDSGVSI 323

Query: 910  SDVAESAMVRGLAHCGKVEEAMLVLNRMLRMRLVPTIATFTTLIHKFCKEAKFVDALKLK 969
                 S M+R  +    +E A      ++R      I   T L+  + K  +  DA  + 
Sbjct: 324  DQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVF 383

Query: 970  GTMELSGVKLDVVSYNVLISGLCANGDVMPAFELYEEMKHKGLCPNSTTYSVLIDAIS 1027
              M     + +++S+N LI+G   +G    A E++E M  +G+ PN  T+  ++ A  
Sbjct: 384  DRMP----RKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACR 437

Length = 697

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 59.0 bits (144), Expect = 4e-11
 Identities = 20/50 (40%), Positives = 30/50 (60%)

Query: 348 PNEVSYGALLNGFCKHAKFDLARSLLERMRTNGISISCIAYTSVIDGLCK 397
           P+ V+Y  L++G+CK  K + A  L   M+  GI  +   Y+ +IDGLCK
Sbjct: 1   PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 57.4 bits (140), Expect = 1e-10
 Identities = 19/49 (38%), Positives = 28/49 (57%)

Query: 138 PSVYTCNMMLSFMLKDRRVDSVWLLFDDMLDRKICPNVATFNILINVSC 186
           P V T N ++    K  +V+    LF++M  R I PNV T++ILI+  C
Sbjct: 1   PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLC 49

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional

 Score = 65.3 bits (159), Expect = 2e-10
 Identities = 62/272 (22%), Positives = 116/272 (42%), Gaps = 22/272 (8%)

Query: 111 LIRVYLREGMVEYALETFQLMGFRGFNPSVYTCNMMLSFMLKDRRVDSVWLLFDDMLDRK 170
           LI +Y + G +E A   F  M  +    +V   +M+  + L     +++ L ++ M D  
Sbjct: 265 LIDMYSKCGDIEDARCVFDGMPEKT---TVAWNSMLAGYALHGYSEEALCLYYE-MRDSG 320

Query: 171 ICPNVATFNILINVSCVEGKLKKAGYLLRKMEESGYVPNIVTYNTLLNWYCKKGRYKAAF 230
           +  +  TF+I+I +      L+ A      +  +G+  +IV    L++ Y K GR + A 
Sbjct: 321 VSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDAR 380

Query: 231 KLIDCMASKGIEADVCTYNMFIDDLCRNNRSAKGYLLLKNMRKRMITPNEVTYNTLIN-- 288
            + D M  K    ++ ++N  I     + R  K   + + M    + PN VT+  +++  
Sbjct: 381 NVFDRMPRK----NLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSAC 436

Query: 289 ---GFVKEGKIQVASRVFDEMS-MLNFSPNSITYNELIDGHCCKGNFKEAFRLLAMMEEM 344
              G  ++G       +F  MS      P ++ Y  +I+    +G   EA+   AM+   
Sbjct: 437 RYSGLSEQGW-----EIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAY---AMIRRA 488

Query: 345 GLRPNEVSYGALLNGFCKHAKFDLARSLLERM 376
             +P    + ALL     H   +L R   E++
Sbjct: 489 PFKPTVNMWAALLTACRIHKNLELGRLAAEKL 520

Length = 697

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 56.6 bits (138), Expect = 2e-10
 Identities = 22/49 (44%), Positives = 33/49 (67%)

Query: 944 PTIATFTTLIHKFCKEAKFVDALKLKGTMELSGVKLDVVSYNVLISGLC 992
           P + T+ TLI  +CK+ K  +ALKL   M+  G+K +V +Y++LI GLC
Sbjct: 1   PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLC 49

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|222719 pfam14377, DUF4414, Domain of unknown function (DUF4414)

 Score = 58.5 bits (142), Expect = 2e-10
 Identities = 23/59 (38%), Positives = 31/59 (52%), Gaps = 2/59 (3%)

Query: 1084 IDPTFMEALPEDLLAEVLASQQASSIAQGLAHHGEGQPVDMDNASVIATFPADLCEEKL 1142
            IDPTF+ ALPEDL  EV+A Q  +S     +    G+     N   +A  P ++ EE L
Sbjct: 1    IDPTFLAALPEDLREEVIAQQLRAS--VRQSTSASGEEPTEINPEFLAALPPEIREEVL 57

This family is frequently found on DNA binding proteins of the URE-B1 type and on ligases. Length = 105

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 55.9 bits (136), Expect = 4e-10
 Identities = 20/50 (40%), Positives = 31/50 (62%)

Query: 418 PDLITFSVLINGFCKVGMTRKAKAVLCKMYRDGLVPNKIIYSTLIYYFCK 467
           PD++T++ LI+G+CK G   +A  +  +M + G+ PN   YS LI   CK
Sbjct: 1   PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|205109 pfam12854, PPR_1, PPR repeat

 Score = 52.4 bits (127), Expect = 5e-09
 Identities = 14/34 (41%), Positives = 22/34 (64%)

Query: 274 RMITPNEVTYNTLINGFVKEGKIQVASRVFDEMS 307
           + + P+ VTYNTLI+G  + G++  A  + DEM 
Sbjct: 1   KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34

This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34

>gnl|CDD|205109 pfam12854, PPR_1, PPR repeat

 Score = 51.2 bits (124), Expect = 1e-08
 Identities = 19/34 (55%), Positives = 23/34 (67%)

Query: 975  SGVKLDVVSYNVLISGLCANGDVMPAFELYEEMK 1008
             G+K DVV+YN LI GLC  G V  A EL +EM+
Sbjct: 1    KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34

This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 49.7 bits (120), Expect = 6e-08
 Identities = 20/47 (42%), Positives = 25/47 (53%)

Query: 489 DHFTCNMLVASLCKGGKVCEAEDYVGHMKRIGVVPNSITFDCMIDGY 535
           D  T N L+   CK GKV EA      MK+ G+ PN  T+  +IDG 
Sbjct: 2   DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional

 Score = 56.8 bits (137), Expect = 7e-08
 Identities = 69/323 (21%), Positives = 132/323 (40%), Gaps = 33/323 (10%)

Query: 107 VFDLLIRVYLREGMVEYALETFQLMGFRGFNPSVYTCNMMLSFMLKDRRVDSVWLLFDDM 166
           V + LI +Y +   ++ ALE F  +  +     +   +++    L +R  +++      +
Sbjct: 426 VANALIEMYSKCKCIDKALEVFHNIPEKDV---ISWTSIIAGLRLNNRCFEALIFFRQML 482

Query: 167 LDRKICPNVATFNILINVSCVEGKLKKA----GYLLRK-MEESGYVPNIVTYNTLLNWYC 221
           L  K  PN  T    ++     G L        ++LR  +   G++PN      LL+ Y 
Sbjct: 483 LTLK--PNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPN-----ALLDLYV 535

Query: 222 KKGRYKAAFKLIDCMASKGIEADVCTYNMFIDDLCRNNRSAKGYLLLKNMRKRMITPNEV 281
           + GR   A+   +       E DV ++N+ +     + + +    L   M +  + P+EV
Sbjct: 536 RCGRMNYAWNQFNSH-----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEV 590

Query: 282 TYNTLINGFVKEGKIQVASRVFDEMSM-LNFSPNSITYNELIDGHCCKGNFKEAFRLLAM 340
           T+ +L+    + G +      F  M    + +PN   Y  ++D     G   EA+  +  
Sbjct: 591 TFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFI-- 648

Query: 341 MEEMGLRPNEVSYGALLNGFCKHAKFDL----ARSLLERMRTNGISISCIAYTSVIDGLC 396
             +M + P+   +GALLN    H   +L    A+ + E +  N +      Y  + +   
Sbjct: 649 -NKMPITPDPAVWGALLNACRIHRHVELGELAAQHIFE-LDPNSVGY----YILLCNLYA 702

Query: 397 KCGLLDEAMQLFNKMFKDGLNPD 419
             G  DE  ++   M ++GL  D
Sbjct: 703 DAGKWDEVARVRKTMRENGLTVD 725

Length = 857

>gnl|CDD|205109 pfam12854, PPR_1, PPR repeat

 Score = 48.9 bits (118), Expect = 9e-08
 Identities = 15/33 (45%), Positives = 22/33 (66%)

Query: 204 SGYVPNIVTYNTLLNWYCKKGRYKAAFKLIDCM 236
            G  P++VTYNTL++  C+ GR   A +L+D M
Sbjct: 1   KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEM 33

This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 49.3 bits (119), Expect = 1e-07
 Identities = 20/49 (40%), Positives = 25/49 (51%)

Query: 734 PSLATYNILLHGYSKKKDLLMCSMLLNTMKMEGLLPDKLTCHSLILGFC 782
           P + TYN L+ GY KK  +     L N MK  G+ P+  T   LI G C
Sbjct: 1   PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLC 49

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 48.9 bits (118), Expect = 1e-07
 Identities = 19/50 (38%), Positives = 32/50 (64%)

Query: 453 PNKIIYSTLIYYFCKMGKVTEAMKVYAVMNRNAQGSDHFTCNMLVASLCK 502
           P+ + Y+TLI  +CK GKV EA+K++  M +     + +T ++L+  LCK
Sbjct: 1   PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|205109 pfam12854, PPR_1, PPR repeat

 Score = 48.5 bits (117), Expect = 1e-07
 Identities = 13/33 (39%), Positives = 23/33 (69%)

Query: 379 NGISISCIAYTSVIDGLCKCGLLDEAMQLFNKM 411
            G+    + Y ++IDGLC+ G +DEA++L ++M
Sbjct: 1   KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEM 33

This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 48.6 bits (117), Expect = 2e-07
 Identities = 15/43 (34%), Positives = 24/43 (55%)

Query: 916 AMVRGLAHCGKVEEAMLVLNRMLRMRLVPTIATFTTLIHKFCK 958
            ++ G    GKVEEA+ + N M +  + P + T++ LI   CK
Sbjct: 8   TLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|205109 pfam12854, PPR_1, PPR repeat

 Score = 46.2 bits (111), Expect = 7e-07
 Identities = 16/33 (48%), Positives = 18/33 (54%)

Query: 310 NFSPNSITYNELIDGHCCKGNFKEAFRLLAMME 342
              P+ +TYN LIDG C  G   EA  LL  ME
Sbjct: 2   GLKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34

This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 46.2 bits (111), Expect = 9e-07
 Identities = 21/51 (41%), Positives = 29/51 (56%), Gaps = 1/51 (1%)

Query: 628 PDRYTYTILLAGLCRKGKVVSALLFFEKVVSKRTFSPNNVMFTCLVDGLFK 678
           PD  TY  L+ G C+KGKV  AL  F ++  +    PN   ++ L+DGL K
Sbjct: 1   PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRG-IKPNVYTYSILIDGLCK 50

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 46.2 bits (111), Expect = 1e-06
 Identities = 17/45 (37%), Positives = 25/45 (55%)

Query: 879 YITLINGMCRVGNFQGAFKLKDEMEALGISSSDVAESAMVRGLAH 923
           Y TLI+G C+ G  + A KL +EM+  GI  +    S ++ GL  
Sbjct: 6   YNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 46.2 bits (111), Expect = 1e-06
 Identities = 14/50 (28%), Positives = 28/50 (56%)

Query: 664 PNNVMFTCLVDGLFKAGQSKAAMHISKIMDKEGVYPDTIAFNAVMDGFSR 713
           P+ V +  L+DG  K G+ + A+ +   M K G+ P+   ++ ++DG  +
Sbjct: 1   PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|205109 pfam12854, PPR_1, PPR repeat

 Score = 44.6 bits (107), Expect = 3e-06
 Identities = 13/33 (39%), Positives = 22/33 (66%)

Query: 414 DGLNPDLITFSVLINGFCKVGMTRKAKAVLCKM 446
            GL PD++T++ LI+G C+ G   +A  +L +M
Sbjct: 1   KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEM 33

This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 43.9 bits (105), Expect = 6e-06
 Identities = 17/47 (36%), Positives = 26/47 (55%)

Query: 805 DCFTFNVLMRKCCEAGEMGKAFDLFNIMNMLGVVPDTNTQDAIIMGL 851
           D  T+N L+   C+ G++ +A  LFN M   G+ P+  T   +I GL
Sbjct: 2   DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|205109 pfam12854, PPR_1, PPR repeat

 Score = 42.7 bits (102), Expect = 1e-05
 Identities = 13/34 (38%), Positives = 21/34 (61%)

Query: 344 MGLRPNEVSYGALLNGFCKHAKFDLARSLLERMR 377
            GL+P+ V+Y  L++G C+  + D A  LL+ M 
Sbjct: 1   KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34

This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34

>gnl|CDD|144943 pfam01535, PPR, PPR repeat

 Score = 42.4 bits (101), Expect = 1e-05
 Identities = 14/31 (45%), Positives = 22/31 (70%)

Query: 386 IAYTSVIDGLCKCGLLDEAMQLFNKMFKDGL 416
           + Y S+I G CK G L+EA++LF +M + G+
Sbjct: 1   VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31

This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 42.8 bits (102), Expect = 2e-05
 Identities = 15/49 (30%), Positives = 28/49 (57%)

Query: 769 PDKLTCHSLILGFCETGMLEVGFKFLKKMIAEGTMVDCFTFNVLMRKCC 817
           PD +T ++LI G+C+ G +E   K   +M   G   + +T+++L+   C
Sbjct: 1   PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLC 49

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif)

 Score = 42.1 bits (100), Expect = 2e-05
 Identities = 16/34 (47%), Positives = 26/34 (76%)

Query: 386 IAYTSVIDGLCKCGLLDEAMQLFNKMFKDGLNPD 419
           + Y ++IDGLCK G ++EA++LF +M + G+ PD
Sbjct: 1   VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34

This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35

>gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif)

 Score = 41.7 bits (99), Expect = 3e-05
 Identities = 15/35 (42%), Positives = 21/35 (60%)

Query: 281 VTYNTLINGFVKEGKIQVASRVFDEMSMLNFSPNS 315
           VTYNTLI+G  K G+++ A  +F EM      P+ 
Sbjct: 1   VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35

This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35

>gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif)

 Score = 41.7 bits (99), Expect = 3e-05
 Identities = 16/35 (45%), Positives = 21/35 (60%)

Query: 316 ITYNELIDGHCCKGNFKEAFRLLAMMEEMGLRPNE 350
           +TYN LIDG C  G  +EA  L   M+E G+ P+ 
Sbjct: 1   VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35

This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35

>gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif)

 Score = 40.9 bits (97), Expect = 5e-05
 Identities = 11/34 (32%), Positives = 20/34 (58%)

Query: 421 ITFSVLINGFCKVGMTRKAKAVLCKMYRDGLVPN 454
           +T++ LI+G CK G   +A  +  +M   G+ P+
Sbjct: 1   VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34

This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35

>gnl|CDD|144943 pfam01535, PPR, PPR repeat

 Score = 40.5 bits (96), Expect = 7e-05
 Identities = 17/31 (54%), Positives = 22/31 (70%)

Query: 982  VSYNVLISGLCANGDVMPAFELYEEMKHKGL 1012
            V+YN LISG C  G +  A EL++EMK KG+
Sbjct: 1    VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31

This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31

>gnl|CDD|205109 pfam12854, PPR_1, PPR repeat

 Score = 40.4 bits (96), Expect = 8e-05
 Identities = 13/32 (40%), Positives = 18/32 (56%)

Query: 624 FNLLPDRYTYTILLAGLCRKGKVVSALLFFEK 655
             L PD  TY  L+ GLCR G+V  A+   ++
Sbjct: 1   KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDE 32

This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34

>gnl|CDD|205109 pfam12854, PPR_1, PPR repeat

 Score = 40.0 bits (95), Expect = 1e-04
 Identities = 12/30 (40%), Positives = 18/30 (60%)

Query: 555 GHHPSIFTYGSLLKGLCKGGNLKEAKRFLN 584
           G  P + TY +L+ GLC+ G + EA   L+
Sbjct: 2   GLKPDVVTYNTLIDGLCRAGRVDEAVELLD 31

This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34

>gnl|CDD|144943 pfam01535, PPR, PPR repeat

 Score = 40.1 bits (95), Expect = 1e-04
 Identities = 14/31 (45%), Positives = 21/31 (67%)

Query: 211 VTYNTLLNWYCKKGRYKAAFKLIDCMASKGI 241
           VTYN+L++ YCK G+ + A +L   M  KG+
Sbjct: 1   VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31

This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31

>gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif)

 Score = 39.8 bits (94), Expect = 1e-04
 Identities = 18/35 (51%), Positives = 24/35 (68%)

Query: 982  VSYNVLISGLCANGDVMPAFELYEEMKHKGLCPNS 1016
            V+YN LI GLC  G V  A EL++EMK +G+ P+ 
Sbjct: 1    VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35

This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35

>gnl|CDD|205109 pfam12854, PPR_1, PPR repeat

 Score = 38.9 bits (92), Expect = 3e-04
 Identities = 13/33 (39%), Positives = 21/33 (63%)

Query: 449 DGLVPNKIIYSTLIYYFCKMGKVTEAMKVYAVM 481
            GL P+ + Y+TLI   C+ G+V EA+++   M
Sbjct: 1   KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEM 33

This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34

>gnl|CDD|205109 pfam12854, PPR_1, PPR repeat

 Score = 38.9 bits (92), Expect = 3e-04
 Identities = 13/34 (38%), Positives = 22/34 (64%)

Query: 169 RKICPNVATFNILINVSCVEGKLKKAGYLLRKME 202
           + + P+V T+N LI+  C  G++ +A  LL +ME
Sbjct: 1   KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34

This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34

>gnl|CDD|205109 pfam12854, PPR_1, PPR repeat

 Score = 38.5 bits (91), Expect = 4e-04
 Identities = 14/29 (48%), Positives = 20/29 (68%)

Query: 594 DTVAYNTILAETCKSGNLWEAIVLLDEMV 622
           D V YNT++   C++G + EA+ LLDEM 
Sbjct: 6   DVVTYNTLIDGLCRAGRVDEAVELLDEME 34

This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34

>gnl|CDD|205109 pfam12854, PPR_1, PPR repeat

 Score = 38.5 bits (91), Expect = 5e-04
 Identities = 18/34 (52%), Positives = 21/34 (61%)

Query: 870 KGLTPKCTQYITLINGMCRVGNFQGAFKLKDEME 903
           KGL P    Y TLI+G+CR G    A +L DEME
Sbjct: 1   KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34

This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34

>gnl|CDD|205109 pfam12854, PPR_1, PPR repeat

 Score = 38.1 bits (90), Expect = 5e-04
 Identities = 16/34 (47%), Positives = 19/34 (55%)

Query: 239 KGIEADVCTYNMFIDDLCRNNRSAKGYLLLKNMR 272
           KG++ DV TYN  ID LCR  R  +   LL  M 
Sbjct: 1   KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34

This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34

>gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif)

 Score = 38.2 bits (90), Expect = 5e-04
 Identities = 11/35 (31%), Positives = 19/35 (54%)

Query: 526 ITFDCMIDGYGTLGDGLKAFSMFDEMVKLGHHPSI 560
           +T++ +IDG    G   +A  +F EM + G  P +
Sbjct: 1   VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35

This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35

>gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif)

 Score = 38.2 bits (90), Expect = 5e-04
 Identities = 18/35 (51%), Positives = 23/35 (65%)

Query: 211 VTYNTLLNWYCKKGRYKAAFKLIDCMASKGIEADV 245
           VTYNTL++  CK GR + A +L   M  +GIE DV
Sbjct: 1   VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35

This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35

>gnl|CDD|144943 pfam01535, PPR, PPR repeat

 Score = 37.8 bits (89), Expect = 6e-04
 Identities = 14/31 (45%), Positives = 20/31 (64%)

Query: 281 VTYNTLINGFVKEGKIQVASRVFDEMSMLNF 311
           VTYN+LI+G+ K GK++ A  +F EM     
Sbjct: 1   VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31

This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31

>gnl|CDD|144943 pfam01535, PPR, PPR repeat

 Score = 37.4 bits (88), Expect = 8e-04
 Identities = 14/31 (45%), Positives = 19/31 (61%)

Query: 316 ITYNELIDGHCCKGNFKEAFRLLAMMEEMGL 346
           +TYN LI G+C  G  +EA  L   M+E G+
Sbjct: 1   VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31

This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31

>gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif)

 Score = 37.1 bits (87), Expect = 0.001
 Identities = 13/35 (37%), Positives = 20/35 (57%)

Query: 807 FTFNVLMRKCCEAGEMGKAFDLFNIMNMLGVVPDT 841
            T+N L+   C+AG + +A +LF  M   G+ PD 
Sbjct: 1   VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35

This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35

>gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional

 Score = 42.2 bits (99), Expect = 0.002
 Identities = 50/243 (20%), Positives = 95/243 (39%), Gaps = 17/243 (6%)

Query: 786  MLEVGFKFLKKMIAEGTMVDCFTFNVLMRKCCEAGEMGKAFDLFNIMNMLGVVPDTNTQD 845
            +LE G  F          +   T++ L+  C     +     ++  +   G  PD    +
Sbjct: 112  ILEAGCPF---------TLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMN 162

Query: 846  AIIMGLKRIAAFQESHFVLRGMAEKGLTPKCTQYITLINGMCRVGNFQGAFKLKDEMEAL 905
             +++   +     ++  +   M E+ L      + T+I G+   GN++ AF L  EM   
Sbjct: 163  RVLLMHVKCGMLIDARRLFDEMPERNLA----SWGTIIGGLVDAGNYREAFALFREMWED 218

Query: 906  GISSSDVAESAMVRGLAHCGKVEEAMLVLNRMLRMRLVPTIATFTTLIHKFCKEAKFVDA 965
            G  +       M+R  A  G       +   +L+  +V        LI  + K     DA
Sbjct: 219  GSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDA 278

Query: 966  LKLKGTMELSGVKLDVVSYNVLISGLCANGDVMPAFELYEEMKHKGLCPNSTTYSVLIDA 1025
              +   M     +   V++N +++G   +G    A  LY EM+  G+  +  T+S++I  
Sbjct: 279  RCVFDGMP----EKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRI 334

Query: 1026 ISK 1028
             S+
Sbjct: 335  FSR 337

Length = 697

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 37.0 bits (87), Expect = 0.002
 Identities = 16/38 (42%), Positives = 24/38 (63%)

Query: 111 LIRVYLREGMVEYALETFQLMGFRGFNPSVYTCNMMLS 148
           LI  Y ++G VE AL+ F  M  RG  P+VYT ++++ 
Sbjct: 9   LIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILID 46

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif)

 Score = 36.7 bits (86), Expect = 0.002
 Identities = 11/35 (31%), Positives = 18/35 (51%)

Query: 351 VSYGALLNGFCKHAKFDLARSLLERMRTNGISISC 385
           V+Y  L++G CK  + + A  L + M+  GI    
Sbjct: 1   VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35

This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35

>gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif)

 Score = 36.3 bits (85), Expect = 0.002
 Identities = 12/35 (34%), Positives = 19/35 (54%)

Query: 141 YTCNMMLSFMLKDRRVDSVWLLFDDMLDRKICPNV 175
            T N ++  + K  RV+    LF +M +R I P+V
Sbjct: 1   VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35

This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35

>gnl|CDD|144943 pfam01535, PPR, PPR repeat

 Score = 35.9 bits (84), Expect = 0.003
 Identities = 11/31 (35%), Positives = 20/31 (64%)

Query: 351 VSYGALLNGFCKHAKFDLARSLLERMRTNGI 381
           V+Y +L++G+CK  K + A  L + M+  G+
Sbjct: 1   VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31

This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31

>gnl|CDD|144943 pfam01535, PPR, PPR repeat

 Score = 35.9 bits (84), Expect = 0.003
 Identities = 10/31 (32%), Positives = 19/31 (61%)

Query: 421 ITFSVLINGFCKVGMTRKAKAVLCKMYRDGL 451
           +T++ LI+G+CK G   +A  +  +M   G+
Sbjct: 1   VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31

This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31

>gnl|CDD|205109 pfam12854, PPR_1, PPR repeat

 Score = 35.8 bits (84), Expect = 0.004
 Identities = 11/33 (33%), Positives = 19/33 (57%)

Query: 520 GVVPNSITFDCMIDGYGTLGDGLKAFSMFDEMV 552
           G+ P+ +T++ +IDG    G   +A  + DEM 
Sbjct: 2   GLKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34

This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	1211
PLN03077	857	Protein ECB2; Provisional	100.0
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	100.0
PLN03077	857	Protein ECB2; Provisional	100.0
PLN03218	1060	maturation of RBCL 1; Provisional	100.0
PLN03218	1060	maturation of RBCL 1; Provisional	100.0
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	100.0
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	100.0
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	100.0
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	100.0
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	100.0
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.97
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.97
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	99.97
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	99.97
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	99.97
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	99.95
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.9
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.9
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	99.88
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	99.87
PRK11788	389	tetratricopeptide repeat protein; Provisional	99.87
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	99.86
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	99.86
PF14432	116	DYW_deaminase: DYW family of nucleic acid deaminas	99.86
PRK11788	389	tetratricopeptide repeat protein; Provisional	99.85
KOG2076	895	consensus RNA polymerase III transcription factor	99.85
KOG2076	895	consensus RNA polymerase III transcription factor	99.85
KOG0495	913	consensus HAT repeat protein [RNA processing and m	99.83
PRK14574	822	hmsH outer membrane protein; Provisional	99.82
KOG0495	913	consensus HAT repeat protein [RNA processing and m	99.82
PRK14574	822	hmsH outer membrane protein; Provisional	99.82
KOG4422	625	consensus Uncharacterized conserved protein [Funct	99.81
KOG4318	1088	consensus Bicoid mRNA stability factor [RNA proces	99.77
KOG4318	1088	consensus Bicoid mRNA stability factor [RNA proces	99.75
KOG4422	625	consensus Uncharacterized conserved protein [Funct	99.74
KOG2003	840	consensus TPR repeat-containing protein [General f	99.74
KOG0985	1666	consensus Vesicle coat protein clathrin, heavy cha	99.73
KOG1126	638	consensus DNA-binding cell division cycle control	99.71
KOG0547	606	consensus Translocase of outer mitochondrial membr	99.7
KOG2003	840	consensus TPR repeat-containing protein [General f	99.7
KOG0547	606	consensus Translocase of outer mitochondrial membr	99.7
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	99.68
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	99.68
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	99.67
KOG1915	677	consensus Cell cycle control protein (crooked neck	99.67
KOG3616	1636	consensus Selective LIM binding factor [Transcript	99.65
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	99.64
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	99.63
KOG1126	638	consensus DNA-binding cell division cycle control	99.62
KOG0985	1666	consensus Vesicle coat protein clathrin, heavy cha	99.61
KOG1915	677	consensus Cell cycle control protein (crooked neck	99.6
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	99.6
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	99.59
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	99.58
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	99.58
KOG2047	835	consensus mRNA splicing factor [RNA processing and	99.58
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	99.57
KOG2047	835	consensus mRNA splicing factor [RNA processing and	99.56
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	99.55
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	99.54
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	99.52
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	99.52
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	99.51
KOG3616	1636	consensus Selective LIM binding factor [Transcript	99.5
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	99.48
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	99.47
KOG3785	557	consensus Uncharacterized conserved protein [Funct	99.45
KOG3785	557	consensus Uncharacterized conserved protein [Funct	99.45
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	99.44
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	99.43
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	99.41
PRK12370	553	invasion protein regulator; Provisional	99.4
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	99.4
PRK12370	553	invasion protein regulator; Provisional	99.39
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	99.39
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	99.37
KOG1129	478	consensus TPR repeat-containing protein [General f	99.37
KOG1129	478	consensus TPR repeat-containing protein [General f	99.36
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	99.36
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.35
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.33
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	99.32
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	99.28
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	99.27
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	99.27
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	99.26
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	99.26
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	99.25
PRK11189	296	lipoprotein NlpI; Provisional	99.25
PRK11189	296	lipoprotein NlpI; Provisional	99.22
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	99.16
KOG4340	459	consensus Uncharacterized conserved protein [Funct	99.16
PF13041	50	PPR_2: PPR repeat family	99.15
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	99.15
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	99.14
PF13041	50	PPR_2: PPR repeat family	99.14
KOG2376	652	consensus Signal recognition particle, subunit Srp	99.13
KOG1125	579	consensus TPR repeat-containing protein [General f	99.12
KOG2376	652	consensus Signal recognition particle, subunit Srp	99.09
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	99.05
PLN02789	320	farnesyltranstransferase	99.01
KOG1125	579	consensus TPR repeat-containing protein [General f	99.0
PLN02789	320	farnesyltranstransferase	98.96
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	98.96
KOG4340	459	consensus Uncharacterized conserved protein [Funct	98.89
PRK04841	903	transcriptional regulator MalT; Provisional	98.84
PRK15359	144	type III secretion system chaperone protein SscB;	98.78
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	98.78
PRK04841	903	transcriptional regulator MalT; Provisional	98.76
PRK15359	144	type III secretion system chaperone protein SscB;	98.76
KOG1128	777	consensus Uncharacterized conserved protein, conta	98.75
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	98.75
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	98.71
PRK10370	198	formate-dependent nitrite reductase complex subuni	98.7
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	98.7
KOG1128	777	consensus Uncharacterized conserved protein, conta	98.68
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	98.68
PRK10370	198	formate-dependent nitrite reductase complex subuni	98.65
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	98.65
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	98.65
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	98.62
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	98.62
COG4783	484	Putative Zn-dependent protease, contains TPR repea	98.62
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	98.61
KOG1914	656	consensus mRNA cleavage and polyadenylation factor	98.58
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	98.58
KOG1914	656	consensus mRNA cleavage and polyadenylation factor	98.58
PRK14720	906	transcript cleavage factor/unknown domain fusion p	98.53
KOG3060	289	consensus Uncharacterized conserved protein [Funct	98.52
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	98.51
PF12854	34	PPR_1: PPR repeat	98.51
PRK14720	906	transcript cleavage factor/unknown domain fusion p	98.51
PF12854	34	PPR_1: PPR repeat	98.5
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	98.47
TIGR02552	135	LcrH_SycD type III secretion low calcium response	98.43
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	98.39
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	98.36
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	98.35
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	98.34
TIGR02552	135	LcrH_SycD type III secretion low calcium response	98.3
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	98.3
KOG0553	304	consensus TPR repeat-containing protein [General f	98.3
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	98.27
COG4783	484	Putative Zn-dependent protease, contains TPR repea	98.24
PF07079	549	DUF1347: Protein of unknown function (DUF1347); In	98.22
KOG3060	289	consensus Uncharacterized conserved protein [Funct	98.21
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	98.13
KOG0553	304	consensus TPR repeat-containing protein [General f	98.12
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	98.12
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	98.08
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	98.07
COG4700	251	Uncharacterized protein conserved in bacteria cont	98.0
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	97.97
COG3898	531	Uncharacterized membrane-bound protein [Function u	97.95
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	97.89
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	97.89
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	97.86
KOG2041	1189	consensus WD40 repeat protein [General function pr	97.85
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	97.85
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	97.85
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	97.83
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	97.82
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	97.82
COG3898	531	Uncharacterized membrane-bound protein [Function u	97.8
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	97.79
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	97.79
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	97.78
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	97.75
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	97.74
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	97.73
TIGR00756	35	PPR pentatricopeptide repeat domain (PPR motif). T	97.72
TIGR00756	35	PPR pentatricopeptide repeat domain (PPR motif). T	97.72
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	97.71
PF12688	120	TPR_5: Tetratrico peptide repeat	97.7
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	97.68
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	97.68
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	97.66
KOG1941	518	consensus Acetylcholine receptor-associated protei	97.64
PF07079	549	DUF1347: Protein of unknown function (DUF1347); In	97.63
PF12688	120	TPR_5: Tetratrico peptide repeat	97.62
COG4700	251	Uncharacterized protein conserved in bacteria cont	97.61
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	97.53
KOG1941	518	consensus Acetylcholine receptor-associated protei	97.5
PF13812	34	PPR_3: Pentatricopeptide repeat domain	97.5
PF13812	34	PPR_3: Pentatricopeptide repeat domain	97.48
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	97.48
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	97.43
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	97.38
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	97.37
KOG2796	366	consensus Uncharacterized conserved protein [Funct	97.33
PF01535	31	PPR: PPR repeat; InterPro: IPR002885 This entry re	97.3
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	97.28
PF01535	31	PPR: PPR repeat; InterPro: IPR002885 This entry re	97.27
PRK15331	165	chaperone protein SicA; Provisional	97.27
PRK15331	165	chaperone protein SicA; Provisional	97.24
PF08579	120	RPM2: Mitochondrial ribonuclease P subunit (RPM2);	97.23
PF10037	429	MRP-S27: Mitochondrial 28S ribosomal protein S27;	97.22
COG0457	291	NrfG FOG: TPR repeat [General function prediction	97.21
PF10037	429	MRP-S27: Mitochondrial 28S ribosomal protein S27;	97.19
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	97.19
KOG2796	366	consensus Uncharacterized conserved protein [Funct	97.17
KOG2041	1189	consensus WD40 repeat protein [General function pr	97.14
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	97.14
PRK10803	263	tol-pal system protein YbgF; Provisional	97.09
PRK10803	263	tol-pal system protein YbgF; Provisional	97.07
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	97.05
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	97.04
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	97.04
COG0457	291	NrfG FOG: TPR repeat [General function prediction	97.04
PF08579	120	RPM2: Mitochondrial ribonuclease P subunit (RPM2);	96.97
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	96.97
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	96.96
PF13371	73	TPR_9: Tetratricopeptide repeat	96.96
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	96.93
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	96.83
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	96.75
PRK11906	458	transcriptional regulator; Provisional	96.75
PF13371	73	TPR_9: Tetratricopeptide repeat	96.68
PRK11906	458	transcriptional regulator; Provisional	96.68
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	96.6
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	96.5
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	96.47
PF06239	228	ECSIT: Evolutionarily conserved signalling interme	96.44
PF06239	228	ECSIT: Evolutionarily conserved signalling interme	96.41
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	96.36
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	96.33
KOG1585	308	consensus Protein required for fusion of vesicles	96.25
PF13428	44	TPR_14: Tetratricopeptide repeat	96.17
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	96.12
PF04840	319	Vps16_C: Vps16, C-terminal region; InterPro: IPR00	96.11
PF03704	146	BTAD: Bacterial transcriptional activator domain;	96.07
PF13431	34	TPR_17: Tetratricopeptide repeat	96.06
KOG4555	175	consensus TPR repeat-containing protein [Function	96.03
KOG2610	491	consensus Uncharacterized conserved protein [Funct	96.0
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	95.97
KOG4555	175	consensus TPR repeat-containing protein [Function	95.94
PF04840	319	Vps16_C: Vps16, C-terminal region; InterPro: IPR00	95.9
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	95.83
KOG1585	308	consensus Protein required for fusion of vesicles	95.8
KOG4234	271	consensus TPR repeat-containing protein [General f	95.73
COG4105	254	ComL DNA uptake lipoprotein [General function pred	95.67
KOG1586	288	consensus Protein required for fusion of vesicles	95.67
KOG1550	552	consensus Extracellular protein SEL-1 and related	95.66
PF13512	142	TPR_18: Tetratricopeptide repeat	95.6
KOG1550	552	consensus Extracellular protein SEL-1 and related	95.59
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	95.56
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	95.55
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	95.54
KOG1586	288	consensus Protein required for fusion of vesicles	95.48
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	95.43
KOG4648	536	consensus Uncharacterized conserved protein, conta	95.31
COG3118	304	Thioredoxin domain-containing protein [Posttransla	95.29
KOG4234	271	consensus TPR repeat-containing protein [General f	95.28
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	95.28
PF03704	146	BTAD: Bacterial transcriptional activator domain;	95.27
KOG1258	577	consensus mRNA processing protein [RNA processing	95.19
KOG2610	491	consensus Uncharacterized conserved protein [Funct	95.07
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	95.06
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	95.05
COG5107	660	RNA14 Pre-mRNA 3'-end processing (cleavage and pol	94.96
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	94.91
PF13512	142	TPR_18: Tetratricopeptide repeat	94.75
KOG1258	577	consensus mRNA processing protein [RNA processing	94.74
COG3118	304	Thioredoxin domain-containing protein [Posttransla	94.71
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	94.48
COG4105	254	ComL DNA uptake lipoprotein [General function pred	94.42
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	94.35
KOG0890	2382	consensus Protein kinase of the PI-3 kinase family	94.28
COG4649	221	Uncharacterized protein conserved in bacteria [Fun	94.22
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	94.2
COG4649	221	Uncharacterized protein conserved in bacteria [Fun	94.07
PF10345	608	Cohesin_load: Cohesin loading factor; InterPro: IP	93.96
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	93.89
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	93.78
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	93.7
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	93.6
COG0790	292	FOG: TPR repeat, SEL1 subfamily [General function	93.55
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	93.55
PF13428	44	TPR_14: Tetratricopeptide repeat	93.53
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	93.18
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	93.14
KOG4648	536	consensus Uncharacterized conserved protein, conta	92.86
COG0790	292	FOG: TPR repeat, SEL1 subfamily [General function	92.59
PF12921	126	ATP13: Mitochondrial ATPase expression; InterPro:	92.54
PF10345	608	Cohesin_load: Cohesin loading factor; InterPro: IP	92.47
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	92.4
PF12921	126	ATP13: Mitochondrial ATPase expression; InterPro:	92.36
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	92.31
COG3629	280	DnrI DNA-binding transcriptional activator of the	92.2
PF13431	34	TPR_17: Tetratricopeptide repeat	91.99
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	91.8
COG5107	660	RNA14 Pre-mRNA 3'-end processing (cleavage and pol	91.68
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	91.65
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	91.49
KOG4642	284	consensus Chaperone-dependent E3 ubiquitin protein	91.49
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	91.49
smart00299	140	CLH Clathrin heavy chain repeat homology.	91.38
smart00299	140	CLH Clathrin heavy chain repeat homology.	91.34
COG2909	894	MalT ATP-dependent transcriptional regulator [Tran	90.99
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	90.82
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	90.82
PF09205	161	DUF1955: Domain of unknown function (DUF1955); Int	90.56
KOG1464	440	consensus COP9 signalosome, subunit CSN2 [Posttran	90.54
KOG3941	406	consensus Intermediate in Toll signal transduction	90.21
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	90.04
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	89.81
KOG2471	696	consensus TPR repeat-containing protein [General f	89.75
KOG1464	440	consensus COP9 signalosome, subunit CSN2 [Posttran	89.15
PF13170	297	DUF4003: Protein of unknown function (DUF4003)	88.96
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	88.85
PF09205	161	DUF1955: Domain of unknown function (DUF1955); Int	88.13
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	87.81
KOG3941	406	consensus Intermediate in Toll signal transduction	87.6
COG3629	280	DnrI DNA-binding transcriptional activator of the	87.56
KOG4642	284	consensus Chaperone-dependent E3 ubiquitin protein	87.0
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	85.92
COG1747	711	Uncharacterized N-terminal domain of the transcrip	85.78
KOG2471	696	consensus TPR repeat-containing protein [General f	85.56
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	84.47
KOG4507	886	consensus Uncharacterized conserved protein, conta	84.33
KOG1308	377	consensus Hsp70-interacting protein Hip/Transient	84.3
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	83.98
KOG2062	929	consensus 26S proteasome regulatory complex, subun	83.79
PF07035	167	Mic1: Colon cancer-associated protein Mic1-like; I	83.47
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	83.25
PF04097	613	Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9	83.22
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	82.92
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	82.58
PF04097	613	Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9	81.7
PF07035	167	Mic1: Colon cancer-associated protein Mic1-like; I	81.5
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	81.15
PRK15180	831	Vi polysaccharide biosynthesis protein TviD; Provi	81.03
TIGR02561	153	HrpB1_HrpK type III secretion protein HrpB1/HrpK.	80.33

>PLN03077 Protein ECB2; Provisional

Probab=100.00  E-value=3.2e-111  Score=1066.17  Aligned_cols=791  Identities=18%  Similarity=0.255  Sum_probs=753.8

Q ss_pred             CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHH
Q 000951          312 SPNSITYNELIDGHCCKGNFKEAFRLLAMMEEMGLRPNEVSYGALLNGFCKHAKFDLARSLLERMRTNGISISCIAYTSV  391 (1211)
Q Consensus       312 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~l~~~~~~~~~~~~~~~~~~l  391 (1211)
                      .|+..++|.++.+|++.|++++|..+|++|.+.|+.|+..+|..++.+|...+.++.+.+++..+.+.+..++..++|.+
T Consensus        48 ~~~~~~~n~~i~~l~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~l  127 (857)
T PLN03077         48 SSSTHDSNSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAM  127 (857)
T ss_pred             ccchhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHHH
Confidence            56788899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH
Q 000951          392 IDGLCKCGLLDEAMQLFNKMFKDGLNPDLITFSVLINGFCKVGMTRKAKAVLCKMYRDGLVPNKIIYSTLIYYFCKMGKV  471 (1211)
Q Consensus       392 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~  471 (1211)
                      +.+|++.|+++.|.++|++|.    .||..+||++|.+|++.|++++|+++|++|...|+.||..||+.++.+|+..+++
T Consensus       128 i~~~~~~g~~~~A~~~f~~m~----~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~  203 (857)
T PLN03077        128 LSMFVRFGELVHAWYVFGKMP----ERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDL  203 (857)
T ss_pred             HHHHHhCCChHHHHHHHhcCC----CCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccch
Confidence            999999999999999999997    5799999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 000951          472 TEAMKVYAVMNRNAQGSDHFTCNMLVASLCKGGKVCEAEDYVGHMKRIGVVPNSITFDCMIDGYGTLGDGLKAFSMFDEM  551 (1211)
Q Consensus       472 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m  551 (1211)
                      +.+.+++..+.+.|..||..++|+|+.+|++.|++++|.++|+.|.    .||.++||++|.+|++.|++++|+++|++|
T Consensus       204 ~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~----~~d~~s~n~li~~~~~~g~~~eAl~lf~~M  279 (857)
T PLN03077        204 ARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMP----RRDCISWNAMISGYFENGECLEGLELFFTM  279 (857)
T ss_pred             hhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCC----CCCcchhHHHHHHHHhCCCHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999997    479999999999999999999999999999


Q ss_pred             HHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHH
Q 000951          552 VKLGHHPSIFTYGSLLKGLCKGGNLKEAKRFLNSLHHIPSAVDTVAYNTILAETCKSGNLWEAIVLLDEMVQFNLLPDRY  631 (1211)
Q Consensus       552 ~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~  631 (1211)
                      .+.|+.||..||+.++.+|++.|+.+.|.+++..+.+.+..+|..+|++|+.+|++.|++++|.++|++|.    .||..
T Consensus       280 ~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~d~~  355 (857)
T PLN03077        280 RELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME----TKDAV  355 (857)
T ss_pred             HHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCC----CCCee
Confidence            99999999999999999999999999999999999999999999999999999999999999999999996    47899


Q ss_pred             HHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 000951          632 TYTILLAGLCRKGKVVSALLFFEKVVSKRTFSPNNVMFTCLVDGLFKAGQSKAAMHISKIMDKEGVYPDTIAFNAVMDGF  711 (1211)
Q Consensus       632 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~  711 (1211)
                      +|++++.+|++.|++++|+++|++|.+.+ +.||..+|+.++.+|++.|+++.|.++++.|.+.|+.|+..++++|+++|
T Consensus       356 s~n~li~~~~~~g~~~~A~~lf~~M~~~g-~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y  434 (857)
T PLN03077        356 SWTAMISGYEKNGLPDKALETYALMEQDN-VSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMY  434 (857)
T ss_pred             eHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHH
Confidence            99999999999999999999999999988 99999999999999999999999999999999999999999999999999


Q ss_pred             HhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHH
Q 000951          712 SRMGNMMMANDLLSTMRSRKLCPSLATYNILLHGYSKKKDLLMCSMLLNTMKMEGLLPDKLTCHSLILGFCETGMLEVGF  791 (1211)
Q Consensus       712 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~  791 (1211)
                      ++.|++++|.++|++|.+    +|..+|+.++.+|.+.|++++|+.+|++|.. ++.||..||+.++.+|++.|..+.+.
T Consensus       435 ~k~g~~~~A~~vf~~m~~----~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~  509 (857)
T PLN03077        435 SKCKCIDKALEVFHNIPE----KDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGK  509 (857)
T ss_pred             HHcCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhH
Confidence            999999999999999974    5889999999999999999999999999986 59999999999999999999999999


Q ss_pred             HHHHHHHHcCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhcchhhHHHHHHHHHHcC
Q 000951          792 KFLKKMIAEGTMVDCFTFNVLMRKCCEAGEMGKAFDLFNIMNMLGVVPDTNTQDAIIMGLKRIAAFQESHFVLRGMAEKG  871 (1211)
Q Consensus       792 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~g  871 (1211)
                      +++..+.+.|+.+|..++++|+++|+++|++++|.++|+.+     .||..+|++|+.+|.++|+.++|+.+|++|.+.|
T Consensus       510 ~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g  584 (857)
T PLN03077        510 EIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESG  584 (857)
T ss_pred             HHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence            99999999999999999999999999999999999999987     5899999999999999999999999999999999


Q ss_pred             CCCChhHHHHHHHHHHhcCChhhHHHHHHHHH-HcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCcccCHHHHH
Q 000951          872 LTPKCTQYITLINGMCRVGNFQGAFKLKDEME-ALGISSSDVAESAMVRGLAHCGKVEEAMLVLNRMLRMRLVPTIATFT  950 (1211)
Q Consensus       872 ~~p~~~~~~~l~~~~~~~g~~~eA~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~p~~~~~~  950 (1211)
                      +.||..||..++.+|++.|++++|.++|+.|. +.|+.|+..+|++|+++|.+.|++++|.+++++|   +.+||..+|.
T Consensus       585 ~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m---~~~pd~~~~~  661 (857)
T PLN03077        585 VNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKM---PITPDPAVWG  661 (857)
T ss_pred             CCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHC---CCCCCHHHHH
Confidence            99999999999999999999999999999998 7899999999999999999999999999998875   5789999999


Q ss_pred             HHHHHhhhhCCHHHHHHHHHHHHhcCCCCchH-HHHHHHHHHHhCCChhHHHHHHHHHHHcCCccCh-hhHHHHHHHHHh
Q 000951          951 TLIHKFCKEAKFVDALKLKGTMELSGVKLDVV-SYNVLISGLCANGDVMPAFELYEEMKHKGLCPNS-TTYSVLIDAISK 1028 (1211)
Q Consensus       951 ~L~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~p~~-~~~~~l~~~~~~ 1028 (1211)
                      +|+.+|..+|+.+.|+...+.+.+.  +|+.. .|..+.+.|+..|+|++|.++++.|+++|++|+| ++|+++.+.   
T Consensus       662 aLl~ac~~~~~~e~~e~~a~~l~~l--~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~ie~~~~---  736 (857)
T PLN03077        662 ALLNACRIHRHVELGELAAQHIFEL--DPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEVKGK---  736 (857)
T ss_pred             HHHHHHHHcCChHHHHHHHHHHHhh--CCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCCccEEEECCE---
Confidence            9999999999999999987766655  89766 5666777999999999999999999999999999 999997544   


Q ss_pred             cccchHHHHHHHHHHHHcCCcccCCCCcccchhhhHH-HHHHHH-HHhhhhccCCCCCChhHHhhCchhHHHHHHHHHHH
Q 000951         1029 KENNLVKGEILLKDIQERGFISWNWDGSTQHLHEGLI-NALRKL-KSFKKNRRNNAKIDPTFMEALPEDLLAEVLASQQA 1106 (1211)
Q Consensus      1029 ~~~~~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~i-~~l~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1106 (1211)
                                          +|.|..+|.+||+..+| ..|+.| .+|++.||.   +|+.++.++        +    +
T Consensus       737 --------------------~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~g~~---~~~~~~~~~--------~----~  781 (857)
T PLN03077        737 --------------------VHAFLTDDESHPQIKEINTVLEGFYEKMKASGLA---GSESSSMDE--------I----E  781 (857)
T ss_pred             --------------------EEEEecCCCCCcchHHHHHHHHHHHHHHHhCCcC---CCcchhccc--------c----H
Confidence                                89999999999999999 999999 999999996   444333322        1    4


Q ss_pred             HHHHhhhccCCCCccccCCCcceeeccchhhhhhhhcCcchhhhhHHHHhhccccceeecCccc
Q 000951         1107 SSIAQGLAHHGEGQPVDMDNASVIATFPADLCEEKLFCPCCLLHYLLKLIYQGSKQRVIIGPAV 1170 (1211)
Q Consensus      1107 ~~~~~~~~~h~e~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1170 (1211)
                      ++|+..|++||||||||||||+||||+||||+||||||+||  |+++||||||++|||||||+.
T Consensus       782 ~~k~~~~~~hse~la~a~~l~~~~~~~~i~i~knlr~c~dc--h~~~k~~s~~~~r~i~~rd~~  843 (857)
T PLN03077        782 VSKDDIFCGHSERLAIAFGLINTVPGMPIWVTKNLYMCENC--HNTVKFISKIVRREISVRDTE  843 (857)
T ss_pred             HHHHHHHHhccHHHHHHHhhhcCCCCCeEEEeCCCEeCccH--HHHHHHHHHHhCeEEEEecCC
Confidence            55778999999999999999999999999999999999999  999999999999999999974

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=100.00  E-value=2.2e-86  Score=818.91  Aligned_cols=592  Identities=18%  Similarity=0.242  Sum_probs=554.4

Q ss_pred             CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCccHHHHHH
Q 000951          522 VPNSITFDCMIDGYGTLGDGLKAFSMFDEMVKLG-HHPSIFTYGSLLKGLCKGGNLKEAKRFLNSLHHIPSAVDTVAYNT  600 (1211)
Q Consensus       522 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~  600 (1211)
                      .++..+|+.+|.+|.+.|++++|+++|+.|...+ ..||..+|+.++.+|++.++++.|.+++..+.+.|..||..+|+.
T Consensus        84 ~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~  163 (697)
T PLN03081         84 RKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNR  163 (697)
T ss_pred             CCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHH
Confidence            4466789999999999999999999999998754 678999999999999999999999999999999999899999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcC
Q 000951          601 ILAETCKSGNLWEAIVLLDEMVQFNLLPDRYTYTILLAGLCRKGKVVSALLFFEKVVSKRTFSPNNVMFTCLVDGLFKAG  680 (1211)
Q Consensus       601 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g  680 (1211)
                      ++.+|++.|++++|.++|++|.+    ||..+|++++.+|++.|++++|+++|++|.+.+ ..|+..+|..++.+|...|
T Consensus       164 Li~~y~k~g~~~~A~~lf~~m~~----~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g-~~p~~~t~~~ll~a~~~~~  238 (697)
T PLN03081        164 VLLMHVKCGMLIDARRLFDEMPE----RNLASWGTIIGGLVDAGNYREAFALFREMWEDG-SDAEPRTFVVMLRASAGLG  238 (697)
T ss_pred             HHHHHhcCCCHHHHHHHHhcCCC----CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhC-CCCChhhHHHHHHHHhcCC
Confidence            99999999999999999999963    799999999999999999999999999999988 8999999999999999999


Q ss_pred             CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHH
Q 000951          681 QSKAAMHISKIMDKEGVYPDTIAFNAVMDGFSRMGNMMMANDLLSTMRSRKLCPSLATYNILLHGYSKKKDLLMCSMLLN  760 (1211)
Q Consensus       681 ~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~  760 (1211)
                      ..+.+.+++..+.+.|+.||..++++|+++|++.|++++|.++|++|.+    +|..+||.|+.+|.+.|++++|+++|+
T Consensus       239 ~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~~~vt~n~li~~y~~~g~~~eA~~lf~  314 (697)
T PLN03081        239 SARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE----KTTVAWNSMLAGYALHGYSEEALCLYY  314 (697)
T ss_pred             cHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC----CChhHHHHHHHHHHhCCCHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999963    599999999999999999999999999


Q ss_pred             HHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHHHHHCCCCCC
Q 000951          761 TMKMEGLLPDKLTCHSLILGFCETGMLEVGFKFLKKMIAEGTMVDCFTFNVLMRKCCEAGEMGKAFDLFNIMNMLGVVPD  840 (1211)
Q Consensus       761 ~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~  840 (1211)
                      +|.+.|+.||..||+.++.+|++.|++++|.++++.+.+.|+.||..++++|+++|+++|++++|.++|++|.    .||
T Consensus       315 ~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~----~~d  390 (697)
T PLN03081        315 EMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP----RKN  390 (697)
T ss_pred             HHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC----CCC
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999996    489


Q ss_pred             hhhHHHHHHHHHhhcchhhHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChhhHHHHHHHHHH-cCCCCchHHHHHHHH
Q 000951          841 TNTQDAIIMGLKRIAAFQESHFVLRGMAEKGLTPKCTQYITLINGMCRVGNFQGAFKLKDEMEA-LGISSSDVAESAMVR  919 (1211)
Q Consensus       841 ~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~-~~~~~~~~~~~~l~~  919 (1211)
                      ..+|++|+.+|+++|+.++|+++|++|.+.|+.||..||..++.+|++.|++++|.++|+.|.+ .|+.|+..+|+++++
T Consensus       391 ~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~  470 (697)
T PLN03081        391 LISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIE  470 (697)
T ss_pred             eeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHH
Confidence            9999999999999999999999999999999999999999999999999999999999999975 699999999999999


Q ss_pred             HHHhcCCHHHHHHHHHHHHhCCcccCHHHHHHHHHHhhhhCCHHHHHHHHHHHHhcCCCCc-hHHHHHHHHHHHhCCChh
Q 000951          920 GLAHCGKVEEAMLVLNRMLRMRLVPTIATFTTLIHKFCKEAKFVDALKLKGTMELSGVKLD-VVSYNVLISGLCANGDVM  998 (1211)
Q Consensus       920 ~~~~~g~~~eA~~~~~~~~~~~~~p~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~  998 (1211)
                      +|.+.|++++|.+++++   ++..|+..+|++|+.+|+.+|+++.|..+++.+.  ++.|+ ..+|..++++|++.|+|+
T Consensus       471 ~l~r~G~~~eA~~~~~~---~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~--~~~p~~~~~y~~L~~~y~~~G~~~  545 (697)
T PLN03081        471 LLGREGLLDEAYAMIRR---APFKPTVNMWAALLTACRIHKNLELGRLAAEKLY--GMGPEKLNNYVVLLNLYNSSGRQA  545 (697)
T ss_pred             HHHhcCCHHHHHHHHHH---CCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHh--CCCCCCCcchHHHHHHHHhCCCHH
Confidence            99999999999999876   5678899999999999999999999999988765  45886 458999999999999999


Q ss_pred             HHHHHHHHHHHcCCccCh-hhHHHHHHHHHhcccchHHHHHHHHHHHHcCCcccCCCCcccchhhhHH-HHHHHH-HHhh
Q 000951          999 PAFELYEEMKHKGLCPNS-TTYSVLIDAISKKENNLVKGEILLKDIQERGFISWNWDGSTQHLHEGLI-NALRKL-KSFK 1075 (1211)
Q Consensus       999 ~a~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~~~~~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~i-~~l~~l-~~~~ 1075 (1211)
                      +|.+++++|+++|+++.| .+|+++.+.                       +|.|..+|..||+..+| ..++.| .+|+
T Consensus       546 ~A~~v~~~m~~~g~~k~~g~s~i~~~~~-----------------------~~~f~~~d~~h~~~~~i~~~l~~l~~~~~  602 (697)
T PLN03081        546 EAAKVVETLKRKGLSMHPACTWIEVKKQ-----------------------DHSFFSGDRLHPQSREIYQKLDELMKEIS  602 (697)
T ss_pred             HHHHHHHHHHHcCCccCCCeeEEEECCe-----------------------EEEEccCCCCCccHHHHHHHHHHHHHHHH
Confidence            999999999999999998 999998655                       89999999999999999 999999 9999


Q ss_pred             hhccCCCCCChhHHhhCchhHHHHHHHHHHHHHHHhhhccCCCCccccCCCcceeeccchhhhhhhhcCcchhhhhHHHH
Q 000951         1076 KNRRNNAKIDPTFMEALPEDLLAEVLASQQASSIAQGLAHHGEGQPVDMDNASVIATFPADLCEEKLFCPCCLLHYLLKL 1155 (1211)
Q Consensus      1076 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~e~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1155 (1211)
                      +.||.   +|+       ..++++|+    +++++..|++||||||||||||+||||+||||+||||||+||  |+++||
T Consensus       603 ~~gy~---~~~-------~~~~~~~~----~~~~~~~~~~hsekla~a~~l~~~~~~~~i~i~knlr~c~dc--h~~~k~  666 (697)
T PLN03081        603 EYGYV---AEE-------NELLPDVD----EDEEKVSGRYHSEKLAIAFGLINTSEWTPLQITQSHRICKDC--HKVIKF  666 (697)
T ss_pred             HcCCC---CCc-------chhhcccc----HHHHHHHHHhccHHHHHHhhCccCCCCCeEEEecCCEECCCc--hhhHHH
Confidence            99996   443       34445555    556778999999999999999999999999999999999999  999999


Q ss_pred             hhccccceeecCccc
Q 000951         1156 IYQGSKQRVIIGPAV 1170 (1211)
Q Consensus      1156 ~~~~~~~~~~~~~~~ 1170 (1211)
                      |||+++|||||||+.
T Consensus       667 ~s~~~~r~i~~rd~~  681 (697)
T PLN03081        667 IALVTKREIVVRDAS  681 (697)
T ss_pred             HhhhcceEEEEecCC
Confidence            999999999999974

>PLN03077 Protein ECB2; Provisional

Probab=100.00  E-value=6.2e-82  Score=799.04  Aligned_cols=676  Identities=20%  Similarity=0.272  Sum_probs=644.7

Q ss_pred             CChHHHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHH
Q 000951          103 SNPSVFDLLIRVYLREGMVEYALETFQLMGFRGFNPSVYTCNMMLSFMLKDRRVDSVWLLFDDMLDRKICPNVATFNILI  182 (1211)
Q Consensus       103 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~l~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li  182 (1211)
                      .++..++.+++.|++.|++++|+.+|+.|...|+.|+..+|..++.++.+.+.++.+..++..+.+.+..++..++|.++
T Consensus        49 ~~~~~~n~~i~~l~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~li  128 (857)
T PLN03077         49 SSTHDSNSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAML  128 (857)
T ss_pred             cchhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHHHH
Confidence            34567889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChH
Q 000951          183 NVSCVEGKLKKAGYLLRKMEESGYVPNIVTYNTLLNWYCKKGRYKAAFKLIDCMASKGIEADVCTYNMFIDDLCRNNRSA  262 (1211)
Q Consensus       183 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~  262 (1211)
                      .+|++.|+++.|..+|++|.    .||.++||++|.+|++.|++++|+++|++|...|+.||..||++++++|++.+++.
T Consensus       129 ~~~~~~g~~~~A~~~f~~m~----~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~  204 (857)
T PLN03077        129 SMFVRFGELVHAWYVFGKMP----ERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLA  204 (857)
T ss_pred             HHHHhCCChHHHHHHHhcCC----CCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchh
Confidence            99999999999999999997    47999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 000951          263 KGYLLLKNMRKRMITPNEVTYNTLINGFVKEGKIQVASRVFDEMSMLNFSPNSITYNELIDGHCCKGNFKEAFRLLAMME  342 (1211)
Q Consensus       263 ~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~  342 (1211)
                      .+.+++..|.+.|+.||..+||+||.+|+++|++++|..+|++|.    .||.++||+||.+|++.|++++|+++|++|.
T Consensus       205 ~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~----~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~  280 (857)
T PLN03077        205 RGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMP----RRDCISWNAMISGYFENGECLEGLELFFTMR  280 (857)
T ss_pred             hHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCC----CCCcchhHHHHHHHHhCCCHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999997    4799999999999999999999999999999


Q ss_pred             HCCCCcCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhh
Q 000951          343 EMGLRPNEVSYGALLNGFCKHAKFDLARSLLERMRTNGISISCIAYTSVIDGLCKCGLLDEAMQLFNKMFKDGLNPDLIT  422 (1211)
Q Consensus       343 ~~g~~p~~~t~~~ll~~~~~~g~~~~a~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~  422 (1211)
                      +.|+.||..||+.++.+|++.|+++.|.+++..|.+.|+.||..+||.||.+|+++|++++|.++|++|.    .||..+
T Consensus       281 ~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~d~~s  356 (857)
T PLN03077        281 ELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME----TKDAVS  356 (857)
T ss_pred             HcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCC----CCCeee
Confidence            9999999999999999999999999999999999999999999999999999999999999999999996    579999


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 000951          423 FSVLINGFCKVGMTRKAKAVLCKMYRDGLVPNKIIYSTLIYYFCKMGKVTEAMKVYAVMNRNAQGSDHFTCNMLVASLCK  502 (1211)
Q Consensus       423 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~  502 (1211)
                      ||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+++.|.++++.+.+.|..++..++|+|+++|++
T Consensus       357 ~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k  436 (857)
T PLN03077        357 WTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSK  436 (857)
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHH
Q 000951          503 GGKVCEAEDYVGHMKRIGVVPNSITFDCMIDGYGTLGDGLKAFSMFDEMVKLGHHPSIFTYGSLLKGLCKGGNLKEAKRF  582 (1211)
Q Consensus       503 ~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~  582 (1211)
                      .|++++|.++|++|.+    +|.++|+++|.+|++.|+.++|+.+|++|.. ++.||..||..++.+|++.|.++.+.++
T Consensus       437 ~g~~~~A~~vf~~m~~----~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i  511 (857)
T PLN03077        437 CKCIDKALEVFHNIPE----KDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEI  511 (857)
T ss_pred             cCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHH
Confidence            9999999999999974    7899999999999999999999999999986 5899999999999999999999999999


Q ss_pred             HHHhhhCCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCC
Q 000951          583 LNSLHHIPSAVDTVAYNTILAETCKSGNLWEAIVLLDEMVQFNLLPDRYTYTILLAGLCRKGKVVSALLFFEKVVSKRTF  662 (1211)
Q Consensus       583 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~  662 (1211)
                      +..+.+.+..++..++++|+++|+++|++++|..+|+.+     .||..+|+++|.+|++.|+.++|+++|++|.+.| +
T Consensus       512 ~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g-~  585 (857)
T PLN03077        512 HAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESG-V  585 (857)
T ss_pred             HHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcC-C
Confidence            999999999999999999999999999999999999987     4799999999999999999999999999999988 9


Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHH
Q 000951          663 SPNNVMFTCLVDGLFKAGQSKAAMHISKIMD-KEGVYPDTIAFNAVMDGFSRMGNMMMANDLLSTMRSRKLCPSLATYNI  741 (1211)
Q Consensus       663 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~  741 (1211)
                      .||..||+.++.+|.+.|++++|.++|+.|. +.|+.|+..+|+.++++|++.|++++|.+++++|.   +.||..+|++
T Consensus       586 ~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~---~~pd~~~~~a  662 (857)
T PLN03077        586 NPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMP---ITPDPAVWGA  662 (857)
T ss_pred             CCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCC---CCCCHHHHHH
Confidence            9999999999999999999999999999997 78999999999999999999999999999999984   6789999999


Q ss_pred             HHHHHHccCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH
Q 000951          742 LLHGYSKKKDLLMCSMLLNTMKMEGLLPDKL-TCHSLILGFCETGMLEVGFKFLKKMIAEGTMVDC  806 (1211)
Q Consensus       742 l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~  806 (1211)
                      |+.+|...|+.+.+....+++.+  +.|+.. .|..+...|...|+|++|.++.+.|.+.|+.+++
T Consensus       663 Ll~ac~~~~~~e~~e~~a~~l~~--l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~  726 (857)
T PLN03077        663 LLNACRIHRHVELGELAAQHIFE--LDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDP  726 (857)
T ss_pred             HHHHHHHcCChHHHHHHHHHHHh--hCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCC
Confidence            99999889999988888888887  667554 4445557888888888888888888888877764

>PLN03218 maturation of RBCL 1; Provisional

Probab=100.00  E-value=6.2e-67  Score=642.97  Aligned_cols=547  Identities=19%  Similarity=0.279  Sum_probs=406.0

Q ss_pred             CCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhHHH
Q 000951          136 FNPSVYTCNMMLSFMLKDRRVDSVWLLFDDMLDRKI-CPNVATFNILINVSCVEGKLKKAGYLLRKMEESGYVPNIVTYN  214 (1211)
Q Consensus       136 ~~~~~~~~~~ll~~l~~~~~~~~a~~~~~~m~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~  214 (1211)
                      ..++...|..++..|++.|++++|+++|++|.+.|+ +++..+++.++.+|++.|.+++|..+|+.|..    ||..+|+
T Consensus       366 ~~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn  441 (1060)
T PLN03218        366 GKRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFN  441 (1060)
T ss_pred             CCCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHH
Confidence            355667777777778888888888888888877774 46677777777888888888888888777763    7888888


Q ss_pred             HHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC
Q 000951          215 TLLNWYCKKGRYKAAFKLIDCMASKGIEADVCTYNMFIDDLCRNNRSAKGYLLLKNMRKRMITPNEVTYNTLINGFVKEG  294 (1211)
Q Consensus       215 ~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g  294 (1211)
                      .++.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|
T Consensus       442 ~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G  521 (1060)
T PLN03218        442 MLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAG  521 (1060)
T ss_pred             HHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCc
Confidence            88888888888888888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             CHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHH--CCCCcCHhHHHHHHHHHHhcCChHHHHHH
Q 000951          295 KIQVASRVFDEMSMLNFSPNSITYNELIDGHCCKGNFKEAFRLLAMMEE--MGLRPNEVSYGALLNGFCKHAKFDLARSL  372 (1211)
Q Consensus       295 ~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~g~~p~~~t~~~ll~~~~~~g~~~~a~~l  372 (1211)
                      ++++|.++|++|.+.|+.||..+|+.||.+|++.|++++|.++|++|..  .|+.||.+||+++|.+|++.|++++|.++
T Consensus       522 ~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~el  601 (1060)
T PLN03218        522 QVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEV  601 (1060)
T ss_pred             CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHH
Confidence            8888888888888888888888888888888888888888888888865  56778888888888888888888888888


Q ss_pred             HHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 000951          373 LERMRTNGISISCIAYTSVIDGLCKCGLLDEAMQLFNKMFKDGLNPDLITFSVLINGFCKVGMTRKAKAVLCKMYRDGLV  452 (1211)
Q Consensus       373 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~  452 (1211)
                      |+.|.+.|++|+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+++|.+|++.|++++|.++|++|.+.|+.
T Consensus       602 f~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~  681 (1060)
T PLN03218        602 YQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIK  681 (1060)
T ss_pred             HHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC
Confidence            88888888778888888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 000951          453 PNKIIYSTLIYYFCKMGKVTEAMKVYAVMNRNAQGSDHFTCNMLVASLCKGGKVCEAEDYVGHMKRIGVVPNSITFDCMI  532 (1211)
Q Consensus       453 p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~li  532 (1211)
                      ||..+|+.+|.+|++.|++++|.++|+.|.+.+..||..+||.||.+|++.|++++|.++|++|...|+.||..+|+.++
T Consensus       682 pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL  761 (1060)
T PLN03218        682 LGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILL  761 (1060)
T ss_pred             CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence            88888888888888888888888888888777777888888888888888888888888888888777788888888888


Q ss_pred             HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHHcCCHH
Q 000951          533 DGYGTLGDGLKAFSMFDEMVKLGHHPSIFTYGSLLKGLCKGGNLKEAKRFLNSLHHIPSAVDTVAYNTILAETCKSGNLW  612 (1211)
Q Consensus       533 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~  612 (1211)
                      .+|++.|++++|.++|++|.+.|+.||..+|++++..|.  ++++++..+.+.+.....          .......+..+
T Consensus       762 ~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~--~~y~ka~~l~~~v~~f~~----------g~~~~~n~w~~  829 (1060)
T PLN03218        762 VASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCL--RRFEKACALGEPVVSFDS----------GRPQIENKWTS  829 (1060)
T ss_pred             HHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH--HHHHHHhhhhhhhhhhhc----------cccccccchHH
Confidence            888888888888888888888888888888887775543  234444443332221110          00011112234


Q ss_pred             HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 000951          613 EAIVLLDEMVQFNLLPDRYTYTILLAGLCRKGKVVSALLFFEKVVSKRTFSPNNVMFTCLVDGLFKAGQSKAAMHISKIM  692 (1211)
Q Consensus       613 ~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~  692 (1211)
                      +|..+|++|.+.|+.||..||+.++.+++..+..+.+..+++.+...+ ..|+..+|+++++++.+  ..++|..++++|
T Consensus       830 ~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~-~~~~~~~y~~Li~g~~~--~~~~A~~l~~em  906 (1060)
T PLN03218        830 WALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISA-DSQKQSNLSTLVDGFGE--YDPRAFSLLEEA  906 (1060)
T ss_pred             HHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCC-CCcchhhhHHHHHhhcc--ChHHHHHHHHHH
Confidence            566667777666666666666666666656666666666666555444 55666666666666522  124566666666


Q ss_pred             HhCCCCCCH
Q 000951          693 DKEGVYPDT  701 (1211)
Q Consensus       693 ~~~g~~~~~  701 (1211)
                      .+.|+.|+.
T Consensus       907 ~~~Gi~p~~  915 (1060)
T PLN03218        907 ASLGVVPSV  915 (1060)
T ss_pred             HHcCCCCCc
Confidence            666666654

>PLN03218 maturation of RBCL 1; Provisional

Probab=100.00  E-value=7.1e-67  Score=642.42  Aligned_cols=543  Identities=18%  Similarity=0.280  Sum_probs=296.0

Q ss_pred             HHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCcchhhhhhccCCCCCCChHHHHHHHHHHHHcCChhHHHHHHHHHhhCC
Q 000951           56 ILCLTTHVLVKTRMYEDAKLILRQLAQMGIGQNSVFGSLMNTYPLCNSNPSVFDLLIRVYLREGMVEYALETFQLMGFRG  135 (1211)
Q Consensus        56 ~~~~~~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g  135 (1211)
                      .|..+...+++.|++++|..+|+.|...+..               +.+...+..++..|.+.|.+++|+.+|+.|..  
T Consensus       372 ~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv---------------~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~--  434 (1060)
T PLN03218        372 EYIDAYNRLLRDGRIKDCIDLLEDMEKRGLL---------------DMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN--  434 (1060)
T ss_pred             HHHHHHHHHHHCcCHHHHHHHHHHHHhCCCC---------------CchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC--
Confidence            3344444455555555555555555544321               11223344455555555555555555555542  


Q ss_pred             CCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhHHHH
Q 000951          136 FNPSVYTCNMMLSFMLKDRRVDSVWLLFDDMLDRKICPNVATFNILINVSCVEGKLKKAGYLLRKMEESGYVPNIVTYNT  215 (1211)
Q Consensus       136 ~~~~~~~~~~ll~~l~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~  215 (1211)
                        |+..+||.++.+|++.|+++.|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||.++|++
T Consensus       435 --pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTyna  512 (1060)
T PLN03218        435 --PTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGA  512 (1060)
T ss_pred             --CCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence              555555555555555555555555555555555555555555555555555555555555555555555555555555


Q ss_pred             HHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH--CCCCCCHHHHHHHHHHHHHc
Q 000951          216 LLNWYCKKGRYKAAFKLIDCMASKGIEADVCTYNMFIDDLCRNNRSAKGYLLLKNMRK--RMITPNEVTYNTLINGFVKE  293 (1211)
Q Consensus       216 li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~~~~p~~~~~~~li~~~~~~  293 (1211)
                      +|.+|++.|++++|.++|++|...|+.||..+|+.+|.+|++.|++++|.++|++|..  .|+.||.++|+++|.+|++.
T Consensus       513 LI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~  592 (1060)
T PLN03218        513 LIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANA  592 (1060)
T ss_pred             HHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHC
Confidence            5555555555555555555555555555555555555555555555555555555543  34555555555555555555


Q ss_pred             CCHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHhHHHHHHHHHHhcCChHHHHHHH
Q 000951          294 GKIQVASRVFDEMSMLNFSPNSITYNELIDGHCCKGNFKEAFRLLAMMEEMGLRPNEVSYGALLNGFCKHAKFDLARSLL  373 (1211)
Q Consensus       294 g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~l~  373 (1211)
                      |++++|.++|++|.+.|+.|+..+||.+|.+|++.|++++|.++|++|.+.|+.||..||+.++.+|++.|++++|.++|
T Consensus       593 G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~  672 (1060)
T PLN03218        593 GQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEIL  672 (1060)
T ss_pred             CCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHH
Confidence            55555555555555555555555555555555555555555555555555555555555555555555555555555555


Q ss_pred             HHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 000951          374 ERMRTNGISISCIAYTSVIDGLCKCGLLDEAMQLFNKMFKDGLNPDLITFSVLINGFCKVGMTRKAKAVLCKMYRDGLVP  453 (1211)
Q Consensus       374 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p  453 (1211)
                      ++|.+.|+.||..+|+.||.+|++.|++++|.++|++|.+.|+.||..+||.||.+|++.|++++|.++|++|.+.|+.|
T Consensus       673 ~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~P  752 (1060)
T PLN03218        673 QDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCP  752 (1060)
T ss_pred             HHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCC
Confidence            55555555555555555555555555555555555555555555555555555555555555555555555555555555


Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 000951          454 NKIIYSTLIYYFCKMGKVTEAMKVYAVMNRNAQGSDHFTCNMLVASLCKGGKVCEAEDYVGHMKRIGVVPNSITFDCMID  533 (1211)
Q Consensus       454 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~  533 (1211)
                      |..||+.++.+|++.|++++|.++|+.|.+.|..||..+|+.++.++.  +++++|..+.+.+...         +. ..
T Consensus       753 d~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~--~~y~ka~~l~~~v~~f---------~~-g~  820 (1060)
T PLN03218        753 NTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCL--RRFEKACALGEPVVSF---------DS-GR  820 (1060)
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH--HHHHHHhhhhhhhhhh---------hc-cc
Confidence            555555555555555555555555555555555555555555554322  1233333332222211         00 00


Q ss_pred             HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHHcCCHHH
Q 000951          534 GYGTLGDGLKAFSMFDEMVKLGHHPSIFTYGSLLKGLCKGGNLKEAKRFLNSLHHIPSAVDTVAYNTILAETCKSGNLWE  613 (1211)
Q Consensus       534 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~  613 (1211)
                      .....+..+.|+.+|++|++.|+.||..||+.++.++++.+....+..+++.+...+..++..+|+++++++.+.  .++
T Consensus       821 ~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~  898 (1060)
T PLN03218        821 PQIENKWTSWALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEY--DPR  898 (1060)
T ss_pred             cccccchHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC--hHH
Confidence            011112234466666666666666666666666655555556666666655555555555556666666655221  245


Q ss_pred             HHHHHHHHHhCCCCCCHH
Q 000951          614 AIVLLDEMVQFNLLPDRY  631 (1211)
Q Consensus       614 A~~~~~~m~~~~~~p~~~  631 (1211)
                      |..+|++|...|+.|+..
T Consensus       899 A~~l~~em~~~Gi~p~~~  916 (1060)
T PLN03218        899 AFSLLEEAASLGVVPSVS  916 (1060)
T ss_pred             HHHHHHHHHHcCCCCCcc
Confidence            666666666666555554

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=100.00  E-value=2e-59  Score=579.14  Aligned_cols=476  Identities=20%  Similarity=0.294  Sum_probs=445.5

Q ss_pred             CCCHhHHHHHHHHHHHcCChHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHH
Q 000951          207 VPNIVTYNTLLNWYCKKGRYKAAFKLIDCMASKG-IEADVCTYNMFIDDLCRNNRSAKGYLLLKNMRKRMITPNEVTYNT  285 (1211)
Q Consensus       207 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~  285 (1211)
                      .++.++|+++|.+|.+.|++++|+++|+.|...+ +.||..+|+.++.+|++.++.+.|.+++..|.+.|+.||..+||.
T Consensus        84 ~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~  163 (697)
T PLN03081         84 RKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNR  163 (697)
T ss_pred             CCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHH
Confidence            4566788888888888888888888888887754 678888888888888888888888899999999999999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHhHHHHHHHHHHhcCC
Q 000951          286 LINGFVKEGKIQVASRVFDEMSMLNFSPNSITYNELIDGHCCKGNFKEAFRLLAMMEEMGLRPNEVSYGALLNGFCKHAK  365 (1211)
Q Consensus       286 li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~  365 (1211)
                      |+++|+++|+++.|.++|++|.    .||.++||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+
T Consensus       164 Li~~y~k~g~~~~A~~lf~~m~----~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~  239 (697)
T PLN03081        164 VLLMHVKCGMLIDARRLFDEMP----ERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGS  239 (697)
T ss_pred             HHHHHhcCCCHHHHHHHHhcCC----CCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCc
Confidence            9999999999999999999997    489999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHH
Q 000951          366 FDLARSLLERMRTNGISISCIAYTSVIDGLCKCGLLDEAMQLFNKMFKDGLNPDLITFSVLINGFCKVGMTRKAKAVLCK  445 (1211)
Q Consensus       366 ~~~a~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~  445 (1211)
                      .+.+.+++..+.+.|+.+|..+||+||++|+++|++++|.++|++|.    .+|+++||++|.+|++.|++++|.++|++
T Consensus       240 ~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~~~vt~n~li~~y~~~g~~~eA~~lf~~  315 (697)
T PLN03081        240 ARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP----EKTTVAWNSMLAGYALHGYSEEALCLYYE  315 (697)
T ss_pred             HHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC----CCChhHHHHHHHHHHhCCCHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999996    46999999999999999999999999999


Q ss_pred             HHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhcCCCCCH
Q 000951          446 MYRDGLVPNKIIYSTLIYYFCKMGKVTEAMKVYAVMNRNAQGSDHFTCNMLVASLCKGGKVCEAEDYVGHMKRIGVVPNS  525 (1211)
Q Consensus       446 m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~  525 (1211)
                      |.+.|+.||..||++++.+|++.|++++|.+++..|.+.|..||..++++|+++|+++|++++|.++|++|.    .||.
T Consensus       316 M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~----~~d~  391 (697)
T PLN03081        316 MRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP----RKNL  391 (697)
T ss_pred             HHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC----CCCe
Confidence            999999999999999999999999999999999999999999999999999999999999999999999997    4799


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhh-CCCCccHHHHHHHHHH
Q 000951          526 ITFDCMIDGYGTLGDGLKAFSMFDEMVKLGHHPSIFTYGSLLKGLCKGGNLKEAKRFLNSLHH-IPSAVDTVAYNTILAE  604 (1211)
Q Consensus       526 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~li~~  604 (1211)
                      ++||+||.+|++.|+.++|+++|++|.+.|+.||..||+.++.+|++.|.+++|.++|+.|.+ .+..|+..+|+.++++
T Consensus       392 ~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~  471 (697)
T PLN03081        392 ISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIEL  471 (697)
T ss_pred             eeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHH
Confidence            999999999999999999999999999999999999999999999999999999999999976 5888899999999999


Q ss_pred             HHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC-CHHHHHHHHHHHHHcCCHH
Q 000951          605 TCKSGNLWEAIVLLDEMVQFNLLPDRYTYTILLAGLCRKGKVVSALLFFEKVVSKRTFSP-NNVMFTCLVDGLFKAGQSK  683 (1211)
Q Consensus       605 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~  683 (1211)
                      |++.|++++|.+++++|   ++.|+..+|++|+.+|+..|+++.|..+++++.+   ..| +..+|..|++.|++.|+++
T Consensus       472 l~r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~---~~p~~~~~y~~L~~~y~~~G~~~  545 (697)
T PLN03081        472 LGREGLLDEAYAMIRRA---PFKPTVNMWAALLTACRIHKNLELGRLAAEKLYG---MGPEKLNNYVVLLNLYNSSGRQA  545 (697)
T ss_pred             HHhcCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhC---CCCCCCcchHHHHHHHHhCCCHH
Confidence            99999999999998876   4679999999999999999999999999999876   345 4678999999999999999


Q ss_pred             HHHHHHHHHHhCCCCCC
Q 000951          684 AAMHISKIMDKEGVYPD  700 (1211)
Q Consensus       684 ~A~~~~~~~~~~g~~~~  700 (1211)
                      +|.++++.|.+.|+...
T Consensus       546 ~A~~v~~~m~~~g~~k~  562 (697)
T PLN03081        546 EAAKVVETLKRKGLSMH  562 (697)
T ss_pred             HHHHHHHHHHHcCCccC
Confidence            99999999988887643

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=100.00  E-value=4.1e-50  Score=524.93  Aligned_cols=874  Identities=14%  Similarity=0.032  Sum_probs=730.7

Q ss_pred             ChHHHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 000951          104 NPSVFDLLIRVYLREGMVEYALETFQLMGFRGFNPSVYTCNMMLSFMLKDRRVDSVWLLFDDMLDRKICPNVATFNILIN  183 (1211)
Q Consensus       104 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~l~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~  183 (1211)
                      ++..+....+.+...|++++|+..|++..... +.+...+..+..++.+.|+++.|...|+++...+. ++......+..
T Consensus        21 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~a~   98 (899)
T TIGR02917        21 SPESLIEAAKSYLQKNKYKAAIIQLKNALQKD-PNDAEARFLLGKIYLALGDYAAAEKELRKALSLGY-PKNQVLPLLAR   98 (899)
T ss_pred             CHHHHHHHHHHHHHcCChHhHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-ChhhhHHHHHH
Confidence            45555667888999999999999999987653 55778888999999999999999999999988753 45666778889


Q ss_pred             HHHhcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHH
Q 000951          184 VSCVEGKLKKAGYLLRKMEESGYVPNIVTYNTLLNWYCKKGRYKAAFKLIDCMASKGIEADVCTYNMFIDDLCRNNRSAK  263 (1211)
Q Consensus       184 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~  263 (1211)
                      ++...|++++|..++..............+..+...+.+.|++++|...|+++.... +.+...+..+...+...|++++
T Consensus        99 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~  177 (899)
T TIGR02917        99 AYLLQGKFQQVLDELPGKTLLDDEGAAELLALRGLAYLGLGQLELAQKSYEQALAID-PRSLYAKLGLAQLALAENRFDE  177 (899)
T ss_pred             HHHHCCCHHHHHHhhcccccCCchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHHCCCHHH
Confidence            999999999999999876533334455677888899999999999999999998764 3456778888899999999999


Q ss_pred             HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 000951          264 GYLLLKNMRKRMITPNEVTYNTLINGFVKEGKIQVASRVFDEMSMLNFSPNSITYNELIDGHCCKGNFKEAFRLLAMMEE  343 (1211)
Q Consensus       264 A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~  343 (1211)
                      |..+++.+.+..+ ++...+..+...+...|++++|...|++..+.. +.+..++..++..+...|++++|...++.+.+
T Consensus       178 A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~  255 (899)
T TIGR02917       178 ARALIDEVLTADP-GNVDALLLKGDLLLSLGNIELALAAYRKAIALR-PNNPAVLLALATILIEAGEFEEAEKHADALLK  255 (899)
T ss_pred             HHHHHHHHHHhCC-CChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            9999999987643 477788888999999999999999999998765 45778888999999999999999999999987


Q ss_pred             CCCCcCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhH
Q 000951          344 MGLRPNEVSYGALLNGFCKHAKFDLARSLLERMRTNGISISCIAYTSVIDGLCKCGLLDEAMQLFNKMFKDGLNPDLITF  423 (1211)
Q Consensus       344 ~g~~p~~~t~~~ll~~~~~~g~~~~a~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~  423 (1211)
                      ... .+...+......+...|+++.|...++.+.+.+. .+...+..+...+...|++++|...|+++.+.. +.+...+
T Consensus       256 ~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~  332 (899)
T TIGR02917       256 KAP-NSPLAHYLKALVDFQKKNYEDARETLQDALKSAP-EYLPALLLAGASEYQLGNLEQAYQYLNQILKYA-PNSHQAR  332 (899)
T ss_pred             hCC-CCchHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CchhHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHH
Confidence            642 2333344444556678999999999999988762 334455566777889999999999999998763 3356777


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcC
Q 000951          424 SVLINGFCKVGMTRKAKAVLCKMYRDGLVPNKIIYSTLIYYFCKMGKVTEAMKVYAVMNRNAQGSDHFTCNMLVASLCKG  503 (1211)
Q Consensus       424 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~  503 (1211)
                      ..+...+.+.|++++|...+.++.... +.+...+..+...+.+.|++++|.+.|+.+.+..+. +...+..+...+...
T Consensus       333 ~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~  410 (899)
T TIGR02917       333 RLLASIQLRLGRVDEAIATLSPALGLD-PDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPE-NAAARTQLGISKLSQ  410 (899)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHhC
Confidence            888889999999999999999998764 557778888999999999999999999998887554 667788888899999


Q ss_pred             CChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHH
Q 000951          504 GKVCEAEDYVGHMKRIGVVPNSITFDCMIDGYGTLGDGLKAFSMFDEMVKLGHHPSIFTYGSLLKGLCKGGNLKEAKRFL  583 (1211)
Q Consensus       504 g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~  583 (1211)
                      |++++|.+.|..+...... +...+..++..+.+.|++++|+.+++++... .+++..++..+...+...|++++|.+.|
T Consensus       411 ~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~  488 (899)
T TIGR02917       411 GDPSEAIADLETAAQLDPE-LGRADLLLILSYLRSGQFDKALAAAKKLEKK-QPDNASLHNLLGAIYLGKGDLAKAREAF  488 (899)
T ss_pred             CChHHHHHHHHHHHhhCCc-chhhHHHHHHHHHhcCCHHHHHHHHHHHHHh-CCCCcHHHHHHHHHHHhCCCHHHHHHHH
Confidence            9999999999998876422 3456667788899999999999999999874 3556778888899999999999999999


Q ss_pred             HHhhhCCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCC
Q 000951          584 NSLHHIPSAVDTVAYNTILAETCKSGNLWEAIVLLDEMVQFNLLPDRYTYTILLAGLCRKGKVVSALLFFEKVVSKRTFS  663 (1211)
Q Consensus       584 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~  663 (1211)
                      .++.+..+. +...+..++..+...|++++|.+.|+++...+ +.+..++..+...+...|+.++|...++++.+.+  +
T Consensus       489 ~~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~  564 (899)
T TIGR02917       489 EKALSIEPD-FFPAAANLARIDIQEGNPDDAIQRFEKVLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN--P  564 (899)
T ss_pred             HHHHhhCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--c
Confidence            999887654 66778888999999999999999999998864 3467788888889999999999999999998864  4


Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHH
Q 000951          664 PNNVMFTCLVDGLFKAGQSKAAMHISKIMDKEGVYPDTIAFNAVMDGFSRMGNMMMANDLLSTMRSRKLCP-SLATYNIL  742 (1211)
Q Consensus       664 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l  742 (1211)
                      .+...+..++..+...|++++|..+++.+.+.. +.+...|..++..|.+.|++++|...|+++.+.  .| +...+..+
T Consensus       565 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l  641 (899)
T TIGR02917       565 QEIEPALALAQYYLGKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLAL--QPDSALALLLL  641 (899)
T ss_pred             cchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHH
Confidence            556778888999999999999999999987653 556788899999999999999999999999864  34 67788889


Q ss_pred             HHHHHccCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCc
Q 000951          743 LHGYSKKKDLLMCSMLLNTMKMEGLLP-DKLTCHSLILGFCETGMLEVGFKFLKKMIAEGTMVDCFTFNVLMRKCCEAGE  821 (1211)
Q Consensus       743 ~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~  821 (1211)
                      +.+|...|++++|...|+++.+  ..| +..++..++..+...|++++|.++++.+.... +.+...+..++.++...|+
T Consensus       642 ~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~  718 (899)
T TIGR02917       642 ADAYAVMKNYAKAITSLKRALE--LKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKD  718 (899)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCC
Confidence            9999999999999999999987  445 46778888899999999999999999998864 4466778888899999999


Q ss_pred             HHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhcchhhHHHHHHHHHHcCCCCC-hhHHHHHHHHHHhcCChhhHHHHHH
Q 000951          822 MGKAFDLFNIMNMLGVVPDTNTQDAIIMGLKRIAAFQESHFVLRGMAEKGLTPK-CTQYITLINGMCRVGNFQGAFKLKD  900 (1211)
Q Consensus       822 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~eA~~~~~  900 (1211)
                      +++|++.|+++.+..  |+..++..++.++.+.|++++|...++++++  ..|+ ...+..++..+...|++++|.+.|+
T Consensus       719 ~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  794 (899)
T TIGR02917       719 YPAAIQAYRKALKRA--PSSQNAIKLHRALLASGNTAEAVKTLEAWLK--THPNDAVLRTALAELYLAQKDYDKAIKHYR  794 (899)
T ss_pred             HHHHHHHHHHHHhhC--CCchHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCcCHHHHHHHHH
Confidence            999999999998754  5557788889999999999999999999988  5664 5788889999999999999999999


Q ss_pred             HHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCcccCHHHHHHHHHHhhhhCCHHHHHHHHHHHHhcCCCC-
Q 000951          901 EMEALGISSSDVAESAMVRGLAHCGKVEEAMLVLNRMLRMRLVPTIATFTTLIHKFCKEAKFVDALKLKGTMELSGVKL-  979 (1211)
Q Consensus       901 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~p~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~p-  979 (1211)
                      ++.+.. ++++.++..++.++...|+ .+|+..++++++..+. ++..+..++.++...|++++|...|+.+.+.  .| 
T Consensus       795 ~~~~~~-p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~--~~~  869 (899)
T TIGR02917       795 TVVKKA-PDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPN-IPAILDTLGWLLVEKGEADRALPLLRKAVNI--APE  869 (899)
T ss_pred             HHHHhC-CCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCC-CcHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCC
Confidence            998764 6778888999999999999 8899999999988765 7788889999999999999999999887776  55 


Q ss_pred             chHHHHHHHHHHHhCCChhHHHHHHHHHH
Q 000951          980 DVVSYNVLISGLCANGDVMPAFELYEEMK 1008 (1211)
Q Consensus       980 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 1008 (1211)
                      +..++..++.+|...|++++|.+++++|+
T Consensus       870 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~  898 (899)
T TIGR02917       870 AAAIRYHLALALLATGRKAEARKELDKLL  898 (899)
T ss_pred             ChHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence            56688889999999999999999998885

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=100.00  E-value=1.1e-49  Score=520.88  Aligned_cols=876  Identities=13%  Similarity=0.019  Sum_probs=753.6

Q ss_pred             CHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhHHHHHHH
Q 000951          139 SVYTCNMMLSFMLKDRRVDSVWLLFDDMLDRKICPNVATFNILINVSCVEGKLKKAGYLLRKMEESGYVPNIVTYNTLLN  218 (1211)
Q Consensus       139 ~~~~~~~ll~~l~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~  218 (1211)
                      +...+-.....+.+.|+++.|...|++..+. .+.+...+..+..++++.|++++|...++++.+.+.. +......+..
T Consensus        21 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~a~   98 (899)
T TIGR02917        21 SPESLIEAAKSYLQKNKYKAAIIQLKNALQK-DPNDAEARFLLGKIYLALGDYAAAEKELRKALSLGYP-KNQVLPLLAR   98 (899)
T ss_pred             CHHHHHHHHHHHHHcCChHhHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-hhhhHHHHHH
Confidence            5556666677888999999999999999875 4567788899999999999999999999999987653 4455667789


Q ss_pred             HHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHH
Q 000951          219 WYCKKGRYKAAFKLIDCMASKGIEADVCTYNMFIDDLCRNNRSAKGYLLLKNMRKRMITPNEVTYNTLINGFVKEGKIQV  298 (1211)
Q Consensus       219 ~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~  298 (1211)
                      .+...|++++|..++.+......+.+...+..+...+...|++++|...|+.+.+..+. +...+..+...+...|++++
T Consensus        99 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~~~~~~  177 (899)
T TIGR02917        99 AYLLQGKFQQVLDELPGKTLLDDEGAAELLALRGLAYLGLGQLELAQKSYEQALAIDPR-SLYAKLGLAQLALAENRFDE  177 (899)
T ss_pred             HHHHCCCHHHHHHhhcccccCCchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHHCCCHHH
Confidence            99999999999999987754444556677888888999999999999999999887653 56788889999999999999


Q ss_pred             HHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHhHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 000951          299 ASRVFDEMSMLNFSPNSITYNELIDGHCCKGNFKEAFRLLAMMEEMGLRPNEVSYGALLNGFCKHAKFDLARSLLERMRT  378 (1211)
Q Consensus       299 A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~l~~~~~~  378 (1211)
                      |..+++++.+.. +++...|..+...+...|++++|...|++..+.+ +.+..++..++..+...|++++|...++.+.+
T Consensus       178 A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~  255 (899)
T TIGR02917       178 ARALIDEVLTAD-PGNVDALLLKGDLLLSLGNIELALAAYRKAIALR-PNNPAVLLALATILIEAGEFEEAEKHADALLK  255 (899)
T ss_pred             HHHHHHHHHHhC-CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            999999998764 5678889999999999999999999999998764 45677888899999999999999999999998


Q ss_pred             CCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 000951          379 NGISISCIAYTSVIDGLCKCGLLDEAMQLFNKMFKDGLNPDLITFSVLINGFCKVGMTRKAKAVLCKMYRDGLVPNKIIY  458 (1211)
Q Consensus       379 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~  458 (1211)
                      ... .+...+......+...|++++|...|+++.+.+.. +...+..+...+...|++++|...+.++.+.. +.+...+
T Consensus       256 ~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~-~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~  332 (899)
T TIGR02917       256 KAP-NSPLAHYLKALVDFQKKNYEDARETLQDALKSAPE-YLPALLLAGASEYQLGNLEQAYQYLNQILKYA-PNSHQAR  332 (899)
T ss_pred             hCC-CCchHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-chhHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHH
Confidence            763 34444555566677899999999999999886422 24455566777889999999999999998864 5566778


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc
Q 000951          459 STLIYYFCKMGKVTEAMKVYAVMNRNAQGSDHFTCNMLVASLCKGGKVCEAEDYVGHMKRIGVVPNSITFDCMIDGYGTL  538 (1211)
Q Consensus       459 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~  538 (1211)
                      ..+...+...|++++|...+..+....+. +...+..+...+.+.|++++|.+.|+++.+.. +.+...+..+...+...
T Consensus       333 ~~la~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~  410 (899)
T TIGR02917       333 RLLASIQLRLGRVDEAIATLSPALGLDPD-DPAALSLLGEAYLALGDFEKAAEYLAKATELD-PENAAARTQLGISKLSQ  410 (899)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhC
Confidence            88889999999999999999999887654 67888999999999999999999999998764 23667888899999999


Q ss_pred             CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHHcCCHHHHHHHH
Q 000951          539 GDGLKAFSMFDEMVKLGHHPSIFTYGSLLKGLCKGGNLKEAKRFLNSLHHIPSAVDTVAYNTILAETCKSGNLWEAIVLL  618 (1211)
Q Consensus       539 g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~  618 (1211)
                      |++++|++.|+++.+... ........++..+.+.|++++|.+++..+....+. +..++..++..+...|++++|...|
T Consensus       411 ~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~  488 (899)
T TIGR02917       411 GDPSEAIADLETAAQLDP-ELGRADLLLILSYLRSGQFDKALAAAKKLEKKQPD-NASLHNLLGAIYLGKGDLAKAREAF  488 (899)
T ss_pred             CChHHHHHHHHHHHhhCC-cchhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC-CcHHHHHHHHHHHhCCCHHHHHHHH
Confidence            999999999999987642 23445566778899999999999999999876554 6788999999999999999999999


Q ss_pred             HHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC
Q 000951          619 DEMVQFNLLPDRYTYTILLAGLCRKGKVVSALLFFEKVVSKRTFSPNNVMFTCLVDGLFKAGQSKAAMHISKIMDKEGVY  698 (1211)
Q Consensus       619 ~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~  698 (1211)
                      +++.+.+ +.+...+..+...+...|++++|...|+++++..  +.+..++..+...+...|++++|...+.++.+.+ +
T Consensus       489 ~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~  564 (899)
T TIGR02917       489 EKALSIE-PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTID--PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN-P  564 (899)
T ss_pred             HHHHhhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-c
Confidence            9999864 3456678888899999999999999999999864  4567889999999999999999999999997764 4


Q ss_pred             CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCC-CHHHHHHH
Q 000951          699 PDTIAFNAVMDGFSRMGNMMMANDLLSTMRSRKLCPSLATYNILLHGYSKKKDLLMCSMLLNTMKMEGLLP-DKLTCHSL  777 (1211)
Q Consensus       699 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l  777 (1211)
                      .+...+..++..|.+.|++++|..+++++.+. .+.+..+|..++.+|...|++++|+..|+++.+.  .| +...+..+
T Consensus       565 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l  641 (899)
T TIGR02917       565 QEIEPALALAQYYLGKGQLKKALAILNEAADA-APDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLAL--QPDSALALLLL  641 (899)
T ss_pred             cchhHHHHHHHHHHHCCCHHHHHHHHHHHHHc-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHH
Confidence            56677888999999999999999999999864 3447889999999999999999999999999984  45 55677888


Q ss_pred             HHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhcch
Q 000951          778 ILGFCETGMLEVGFKFLKKMIAEGTMVDCFTFNVLMRKCCEAGEMGKAFDLFNIMNMLGVVPDTNTQDAIIMGLKRIAAF  857 (1211)
Q Consensus       778 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~  857 (1211)
                      +.++...|++++|..+++++.+.. +.+...+..++..+...|++++|.++++.+.+.. +++...+..++..+...|++
T Consensus       642 ~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~  719 (899)
T TIGR02917       642 ADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDY  719 (899)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCH
Confidence            899999999999999999999852 3457788999999999999999999999998765 45678899999999999999


Q ss_pred             hhHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 000951          858 QESHFVLRGMAEKGLTPKCTQYITLINGMCRVGNFQGAFKLKDEMEALGISSSDVAESAMVRGLAHCGKVEEAMLVLNRM  937 (1211)
Q Consensus       858 ~eA~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~  937 (1211)
                      ++|+..|+++++  ..|+..++..++.++.+.|++++|.+.++++.+. .+.+..++..++.+|...|++++|...|+++
T Consensus       720 ~~A~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~  796 (899)
T TIGR02917       720 PAAIQAYRKALK--RAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKT-HPNDAVLRTALAELYLAQKDYDKAIKHYRTV  796 (899)
T ss_pred             HHHHHHHHHHHh--hCCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence            999999999999  6677788889999999999999999999999876 3677889999999999999999999999999


Q ss_pred             HhCCcccCHHHHHHHHHHhhhhCCHHHHHHHHHHHHhcCCCCchH-HHHHHHHHHHhCCChhHHHHHHHHHHHcCCccCh
Q 000951          938 LRMRLVPTIATFTTLIHKFCKEAKFVDALKLKGTMELSGVKLDVV-SYNVLISGLCANGDVMPAFELYEEMKHKGLCPNS 1016 (1211)
Q Consensus       938 ~~~~~~p~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~p~~ 1016 (1211)
                      ++..|. ++.++..++.++...|+ .+|+..++.....  .|+.. .+..++.+|...|++++|.++++++.+.+.. ++
T Consensus       797 ~~~~p~-~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~-~~  871 (899)
T TIGR02917       797 VKKAPD-NAVVLNNLAWLYLELKD-PRALEYAEKALKL--APNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPE-AA  871 (899)
T ss_pred             HHhCCC-CHHHHHHHHHHHHhcCc-HHHHHHHHHHHhh--CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-Ch
Confidence            998865 89999999999999999 8899998877655  77554 7788999999999999999999999885433 66


Q ss_pred             hhHHHHHHHHHhcccchHHHHHHHHHHH
Q 000951         1017 TTYSVLIDAISKKENNLVKGEILLKDIQ 1044 (1211)
Q Consensus      1017 ~~~~~l~~~~~~~~~~~~~a~~~~~~l~ 1044 (1211)
                      ..+..+...+.+.|+.++ |+.+++.+.
T Consensus       872 ~~~~~l~~~~~~~g~~~~-A~~~~~~~~  898 (899)
T TIGR02917       872 AIRYHLALALLATGRKAE-ARKELDKLL  898 (899)
T ss_pred             HHHHHHHHHHHHcCCHHH-HHHHHHHHh
Confidence            899999999999999988 777776653

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=100.00  E-value=3.6e-28  Score=315.38  Aligned_cols=673  Identities=12%  Similarity=0.070  Sum_probs=414.5

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHhHHHHHHHHHHhcCC
Q 000951          286 LINGFVKEGKIQVASRVFDEMSMLNFSPNSITYNELIDGHCCKGNFKEAFRLLAMMEEMGLRPNEVSYGALLNGFCKHAK  365 (1211)
Q Consensus       286 li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~  365 (1211)
                      .+..+-..++.+.|.+.++++.... +.|...+..++..+.+.|+.++|.+.+++..+..  |+...+..+..       
T Consensus        34 q~~~~~~~~~~d~a~~~l~kl~~~~-p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~--P~~~~~~~~~~-------  103 (1157)
T PRK11447         34 QVRLGEATHREDLVRQSLYRLELID-PNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLA--PDSNAYRSSRT-------  103 (1157)
T ss_pred             HHHHHHhhCChHHHHHHHHHHHccC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC--CCChHHHHHHH-------
Confidence            3455667788888888888877653 3356677777788888888888888888887753  44333211110       


Q ss_pred             hHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHh-hHHHHHHHHHhcCCHHHHHHHHH
Q 000951          366 FDLARSLLERMRTNGISISCIAYTSVIDGLCKCGLLDEAMQLFNKMFKDGLNPDLI-TFSVLINGFCKVGMTRKAKAVLC  444 (1211)
Q Consensus       366 ~~~a~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~li~~~~~~g~~~~A~~~~~  444 (1211)
                                ..... .|+......+...+.+.|++++|.+.|+.+.+.. +|+.. ....+.......|+.++|+..|+
T Consensus       104 ----------~~~~~-~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~-p~~~~la~~y~~~~~~~~g~~~~A~~~L~  171 (1157)
T PRK11447        104 ----------TMLLS-TPEGRQALQQARLLATTGRTEEALASYDKLFNGA-PPELDLAVEYWRLVAKLPAQRPEAINQLQ  171 (1157)
T ss_pred             ----------HHHhc-CCchhhHHHHHHHHHhCCCHHHHHHHHHHHccCC-CCChHHHHHHHHHHhhCCccHHHHHHHHH
Confidence                      00011 2233333444555666666666666666666542 12211 11111111123466666666666


Q ss_pred             HHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhcCCCCC
Q 000951          445 KMYRDGLVPNKIIYSTLIYYFCKMGKVTEAMKVYAVMNRNAQGSDHFTCNMLVASLCKGGKVCEAEDYVGHMKRIGVVPN  524 (1211)
Q Consensus       445 ~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~  524 (1211)
                      ++.+.. +.+...+..+...+...|+.++|+..++.+...... +                ...+...+..+...+..++
T Consensus       172 ~ll~~~-P~~~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~-~----------------~~aa~~~~~~l~~~~~~~~  233 (1157)
T PRK11447        172 RLNADY-PGNTGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAG-R----------------DAAAQLWYGQIKDMPVSDA  233 (1157)
T ss_pred             HHHHhC-CCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCc-h----------------HHHHHHHHHHHhccCCChh
Confidence            666653 334455555666666666666666666666543211 0                0111111112211111111


Q ss_pred             H-HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHH
Q 000951          525 S-ITFDCMIDGYGTLGDGLKAFSMFDEMVKLGHHPSIFTYGSLLKGLCKGGNLKEAKRFLNSLHHIPSAVDTVAYNTILA  603 (1211)
Q Consensus       525 ~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~  603 (1211)
                      . ..+...+..+-.......|...+.++......|+... ......+...|++++|...|+++++..+. +..++..+..
T Consensus       234 ~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~-~~~G~~~~~~g~~~~A~~~l~~aL~~~P~-~~~a~~~Lg~  311 (1157)
T PRK11447        234 SVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRA-RAQGLAAVDSGQGGKAIPELQQAVRANPK-DSEALGALGQ  311 (1157)
T ss_pred             hHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHH-HHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHH
Confidence            1 1222222222222233445555554443322232221 12234455667777777777776665544 5666666777


Q ss_pred             HHHHcCCHHHHHHHHHHHHhCCCCC-CHHHHH------------HHHHHHHhCCChHHHHHHHHHHHHcCCCCCCHHHHH
Q 000951          604 ETCKSGNLWEAIVLLDEMVQFNLLP-DRYTYT------------ILLAGLCRKGKVVSALLFFEKVVSKRTFSPNNVMFT  670 (1211)
Q Consensus       604 ~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~------------~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~  670 (1211)
                      .|.+.|++++|+..|++.++..... +...|.            .....+.+.|++++|+..|+++++..  +.+...+.
T Consensus       312 ~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~--P~~~~a~~  389 (1157)
T PRK11447        312 AYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVD--NTDSYAVL  389 (1157)
T ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHH
Confidence            7777777777777777766543211 111111            12334566778888888888877753  33455666


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC--------CHHHHHHH
Q 000951          671 CLVDGLFKAGQSKAAMHISKIMDKEGVYPDTIAFNAVMDGFSRMGNMMMANDLLSTMRSRKLCP--------SLATYNIL  742 (1211)
Q Consensus       671 ~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p--------~~~~~~~l  742 (1211)
                      .+...+...|++++|++.|+++++.. +.+...+..+...|. .++.++|..+++.+.......        ....+..+
T Consensus       390 ~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~  467 (1157)
T PRK11447        390 GLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLANLYR-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQ  467 (1157)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHH
Confidence            77777777888888888887776652 233455555666554 456777777776553221000        12235566


Q ss_pred             HHHHHccCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCc
Q 000951          743 LHGYSKKKDLLMCSMLLNTMKMEGLLPD-KLTCHSLILGFCETGMLEVGFKFLKKMIAEGTMVDCFTFNVLMRKCCEAGE  821 (1211)
Q Consensus       743 ~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~  821 (1211)
                      +..+...|++++|++.|+++++  ..|+ ...+..+...|...|++++|+..++++++.. +.+...+..+...+...|+
T Consensus       468 a~~~~~~g~~~eA~~~~~~Al~--~~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~  544 (1157)
T PRK11447        468 AEALENQGKWAQAAELQRQRLA--LDPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQK-PNDPEQVYAYGLYLSGSDR  544 (1157)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCC
Confidence            7778888888888888888887  4563 4456667788888888888888888887742 2345555556666777888


Q ss_pred             HHHHHHHHHHHHHCCCCCCh---------hhHHHHHHHHHhhcchhhHHHHHHHHHHcCCCC-ChhHHHHHHHHHHhcCC
Q 000951          822 MGKAFDLFNIMNMLGVVPDT---------NTQDAIIMGLKRIAAFQESHFVLRGMAEKGLTP-KCTQYITLINGMCRVGN  891 (1211)
Q Consensus       822 ~~~A~~~~~~~~~~~~~~~~---------~~~~~l~~~~~~~g~~~eA~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~  891 (1211)
                      +++|+..++++......++.         ..+..++..+...|+.++|+.+++.      .| +...+..++..+...|+
T Consensus       545 ~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~------~p~~~~~~~~La~~~~~~g~  618 (1157)
T PRK11447        545 DRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ------QPPSTRIDLTLADWAQQRGD  618 (1157)
T ss_pred             HHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh------CCCCchHHHHHHHHHHHcCC
Confidence            88888888776432211111         1233556778889999999988872      34 44677889999999999


Q ss_pred             hhhHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCcccCHHHHHHHHHHhhhhCCHHHHHHHHHH
Q 000951          892 FQGAFKLKDEMEALGISSSDVAESAMVRGLAHCGKVEEAMLVLNRMLRMRLVPTIATFTTLIHKFCKEAKFVDALKLKGT  971 (1211)
Q Consensus       892 ~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~p~~~~~~~L~~~~~~~g~~~~A~~~~~~  971 (1211)
                      +++|++.|+++++.. |.+..++..++.+|...|++++|++.++++++..+. +...+..++.++...|++++|.++++.
T Consensus       619 ~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~-~~~~~~~la~~~~~~g~~~eA~~~~~~  696 (1157)
T PRK11447        619 YAAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAARAQLAKLPATAND-SLNTQRRVALAWAALGDTAAAQRTFNR  696 (1157)
T ss_pred             HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCC-ChHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence            999999999998763 667788899999999999999999999998887654 777888899999999999999999887


Q ss_pred             HHhcCC-CC----chHHHHHHHHHHHhCCChhHHHHHHHHHHH-cCCccC
Q 000951          972 MELSGV-KL----DVVSYNVLISGLCANGDVMPAFELYEEMKH-KGLCPN 1015 (1211)
Q Consensus       972 ~~~~~~-~p----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~g~~p~ 1015 (1211)
                      +....- .|    +...+..++.++...|++++|+..++.... .|+.|.
T Consensus       697 al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~~~~~~~~  746 (1157)
T PRK11447        697 LIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMVASGITPT  746 (1157)
T ss_pred             HhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCC
Confidence            765421 11    112556678889999999999999988643 455543

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=100.00  E-value=1e-27  Score=311.10  Aligned_cols=653  Identities=14%  Similarity=0.059  Sum_probs=453.1

Q ss_pred             hcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC---------------CCCHhhHHHH
Q 000951          362 KHAKFDLARSLLERMRTNGISISCIAYTSVIDGLCKCGLLDEAMQLFNKMFKDGL---------------NPDLITFSVL  426 (1211)
Q Consensus       362 ~~g~~~~a~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~---------------~p~~~~~~~l  426 (1211)
                      ..++.+.|.+.+.++.... +.+..++..++..+.+.|+.++|.+.++++.+..+               .|+......+
T Consensus        40 ~~~~~d~a~~~l~kl~~~~-p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~~~~~~~~~~~~~~~~~~~~~~l~~  118 (1157)
T PRK11447         40 ATHREDLVRQSLYRLELID-PNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAPDSNAYRSSRTTMLLSTPEGRQALQQ  118 (1157)
T ss_pred             hhCChHHHHHHHHHHHccC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhcCCchhhHHHH
Confidence            3344444444444444332 22333344444444444444444444444443311               2333334555


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCC
Q 000951          427 INGFCKVGMTRKAKAVLCKMYRDGLVPNKII-YSTLIYYFCKMGKVTEAMKVYAVMNRNAQGSDHFTCNMLVASLCKGGK  505 (1211)
Q Consensus       427 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~-~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~  505 (1211)
                      ...+.+.|++++|...|+++.+.. +|+... ...........|+.++|+..++.+....+. +...+..+...+...|+
T Consensus       119 A~ll~~~g~~~eA~~~~~~~l~~~-p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P~-~~~~~~~LA~ll~~~g~  196 (1157)
T PRK11447        119 ARLLATTGRTEEALASYDKLFNGA-PPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYPG-NTGLRNTLALLLFSSGR  196 (1157)
T ss_pred             HHHHHhCCCHHHHHHHHHHHccCC-CCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHccCC
Confidence            667888999999999999988753 444321 111112223458999999999999887665 66778888889999999


Q ss_pred             hHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHcCCCHHHHHHHHH
Q 000951          506 VCEAEDYVGHMKRIGVVPNSITFDCMIDGYGTLGDGLKAFSMFDEMVKLGHHPS-IFTYGSLLKGLCKGGNLKEAKRFLN  584 (1211)
Q Consensus       506 ~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~  584 (1211)
                      .++|+..++++....  +..               ...+...+..+...+..+. ...+...+..+-.....+.|...+.
T Consensus       197 ~~eAl~~l~~~~~~~--~~~---------------~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~  259 (1157)
T PRK11447        197 RDEGFAVLEQMAKSP--AGR---------------DAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLA  259 (1157)
T ss_pred             HHHHHHHHHHHhhCC--Cch---------------HHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHH
Confidence            999999999887632  110               0111111222222111111 1122222222222233445666665


Q ss_pred             HhhhCCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC
Q 000951          585 SLHHIPSAVDTVAYNTILAETCKSGNLWEAIVLLDEMVQFNLLPDRYTYTILLAGLCRKGKVVSALLFFEKVVSKRTFSP  664 (1211)
Q Consensus       585 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p  664 (1211)
                      ........+... .......+...|++++|+..|++.++.+ +.+...+..+...+.+.|++++|+..|+++++..+-.+
T Consensus       260 ~~~~~~~dp~~~-~~~~G~~~~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~  337 (1157)
T PRK11447        260 EQQKQLADPAFR-ARAQGLAAVDSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSS  337 (1157)
T ss_pred             HHHHhccCcchH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcc
Confidence            554443333322 2344677888999999999999999864 33678889999999999999999999999998642222


Q ss_pred             CHHHH------------HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCC
Q 000951          665 NNVMF------------TCLVDGLFKAGQSKAAMHISKIMDKEGVYPDTIAFNAVMDGFSRMGNMMMANDLLSTMRSRKL  732 (1211)
Q Consensus       665 ~~~~~------------~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~  732 (1211)
                      ....+            ......+.+.|++++|+..|+++++.. +.+...+..+...|...|++++|+..|+++.+.  
T Consensus       338 ~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~--  414 (1157)
T PRK11447        338 NRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRM--  414 (1157)
T ss_pred             chhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--
Confidence            22111            233567789999999999999998763 345677788999999999999999999999964  


Q ss_pred             CC-CHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCC--------CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC
Q 000951          733 CP-SLATYNILLHGYSKKKDLLMCSMLLNTMKMEGLLP--------DKLTCHSLILGFCETGMLEVGFKFLKKMIAEGTM  803 (1211)
Q Consensus       733 ~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p--------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~  803 (1211)
                      .| +...+..+...|. .+++++|+..++.+......+        ....+..+...+...|++++|++.++++++.. +
T Consensus       415 ~p~~~~a~~~L~~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P  492 (1157)
T PRK11447        415 DPGNTNAVRGLANLYR-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-P  492 (1157)
T ss_pred             CCCCHHHHHHHHHHHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-C
Confidence            45 5777788888775 467899999887654321000        01234556788889999999999999999853 2


Q ss_pred             CCHhhHHHHHHHHHhcCcHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhcchhhHHHHHHHHHHcCCCCCh-------
Q 000951          804 VDCFTFNVLMRKCCEAGEMGKAFDLFNIMNMLGVVPDTNTQDAIIMGLKRIAAFQESHFVLRGMAEKGLTPKC-------  876 (1211)
Q Consensus       804 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~g~~p~~-------  876 (1211)
                      .+..++..++.+|.+.|++++|+..|+++.+.. +.+...+..++..+...++.++|+..++++......++.       
T Consensus       493 ~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l  571 (1157)
T PRK11447        493 GSVWLTYRLAQDLRQAGQRSQADALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRL  571 (1157)
T ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHH
Confidence            346778889999999999999999999998743 335666777777788899999999999886542222222       


Q ss_pred             --hHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCcccCHHHHHHHHH
Q 000951          877 --TQYITLINGMCRVGNFQGAFKLKDEMEALGISSSDVAESAMVRGLAHCGKVEEAMLVLNRMLRMRLVPTIATFTTLIH  954 (1211)
Q Consensus       877 --~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~p~~~~~~~L~~  954 (1211)
                        ..+..++..+...|++++|.++++.     .+++...+..++..+.+.|++++|++.|+++++..|. ++.++..++.
T Consensus       572 ~~~~~l~~a~~l~~~G~~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~-~~~a~~~la~  645 (1157)
T PRK11447        572 QSDQVLETANRLRDSGKEAEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPG-NADARLGLIE  645 (1157)
T ss_pred             hhhHHHHHHHHHHHCCCHHHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHH
Confidence              2244667889999999999999872     3667778889999999999999999999999998876 8999999999


Q ss_pred             HhhhhCCHHHHHHHHHHHHhcCCCCchH-HHHHHHHHHHhCCChhHHHHHHHHHHHcCCccCh-----hhHHHHHHHHHh
Q 000951          955 KFCKEAKFVDALKLKGTMELSGVKLDVV-SYNVLISGLCANGDVMPAFELYEEMKHKGLCPNS-----TTYSVLIDAISK 1028 (1211)
Q Consensus       955 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~p~~-----~~~~~l~~~~~~ 1028 (1211)
                      +|...|++++|++.++.....  .|+.. .+..++.++...|++++|.++++++.+..-...+     ..+......+..
T Consensus       646 ~~~~~g~~~eA~~~l~~ll~~--~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~  723 (1157)
T PRK11447        646 VDIAQGDLAAARAQLAKLPAT--ANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQ  723 (1157)
T ss_pred             HHHHCCCHHHHHHHHHHHhcc--CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHH
Confidence            999999999999999866544  77654 6788899999999999999999998764322111     244445666778


Q ss_pred             cccchHHHHHHHHHHHHcCCcc
Q 000951         1029 KENNLVKGEILLKDIQERGFIS 1050 (1211)
Q Consensus      1029 ~~~~~~~a~~~~~~l~~~~~~~ 1050 (1211)
                      .|+.+++...+.+++...+..|
T Consensus       724 ~G~~~~A~~~y~~Al~~~~~~~  745 (1157)
T PRK11447        724 TGQPQQALETYKDAMVASGITP  745 (1157)
T ss_pred             cCCHHHHHHHHHHHHhhcCCCC
Confidence            8998886666666666555443

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.97  E-value=2.9e-25  Score=273.06  Aligned_cols=659  Identities=11%  Similarity=-0.016  Sum_probs=345.1

Q ss_pred             CCHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHhHHHHHHHHHHhcCChHHHHHHH
Q 000951          294 GKIQVASRVFDEMSMLNFSPNSITYNELIDGHCCKGNFKEAFRLLAMMEEMGLRPNEVSYGALLNGFCKHAKFDLARSLL  373 (1211)
Q Consensus       294 g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~l~  373 (1211)
                      |++++|...|+...+.. +-+..++..|...|.+.|++++|+..+++..+.  .|+...|..++..+   +++++|..++
T Consensus        58 Gd~~~A~~~l~~Al~~d-P~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~l--dP~n~~~~~~La~i---~~~~kA~~~y  131 (987)
T PRK09782         58 NDEATAIREFEYIHQQV-PDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKR--HPGDARLERSLAAI---PVEVKSVTTV  131 (987)
T ss_pred             CCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CcccHHHHHHHHHh---ccChhHHHHH
Confidence            66666666666665553 223455566666666666666666666666554  34434333333222   5666666666


Q ss_pred             HHHHHCCCCcCHHHHHHHHHH--------HHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHH-HHHHHhcCCHHHHHHHHH
Q 000951          374 ERMRTNGISISCIAYTSVIDG--------LCKCGLLDEAMQLFNKMFKDGLNPDLITFSVL-INGFCKVGMTRKAKAVLC  444 (1211)
Q Consensus       374 ~~~~~~~~~~~~~~~~~li~~--------~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l-i~~~~~~g~~~~A~~~~~  444 (1211)
                      +++.+.. |.+..++..+...        |.+.   ++|.+.++ .......|+..+.... ...|.+.|++++|+.++.
T Consensus       132 e~l~~~~-P~n~~~~~~la~~~~~~~~l~y~q~---eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~  206 (987)
T PRK09782        132 EELLAQQ-KACDAVPTLRCRSEVGQNALRLAQL---PVARAQLN-DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYN  206 (987)
T ss_pred             HHHHHhC-CCChhHHHHHHHHhhccchhhhhhH---HHHHHHHH-HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHH
Confidence            6666654 2333444444443        4444   33333333 2222223333333333 666666777777777777


Q ss_pred             HHHHCCCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhcCCC-
Q 000951          445 KMYRDGLVPNKIIYSTLIYYFCK-MGKVTEAMKVYAVMNRNAQGSDHFTCNMLVASLCKGGKVCEAEDYVGHMKRIGVV-  522 (1211)
Q Consensus       445 ~m~~~g~~p~~~~~~~li~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~-  522 (1211)
                      ++.+.+ +.+..-...+..+|.. .++ +++..+++.    ....+...+..++..|.+.|+.++|..++.++...-.. 
T Consensus       207 ~L~k~~-pl~~~~~~~L~~ay~q~l~~-~~a~al~~~----~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~  280 (987)
T PRK09782        207 EARQQN-TLSAAERRQWFDVLLAGQLD-DRLLALQSQ----GIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTD  280 (987)
T ss_pred             HHHhcC-CCCHHHHHHHHHHHHHhhCH-HHHHHHhch----hcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCC
Confidence            776664 3334444555555555 344 555555442    12235666666777777777777777766666543211 


Q ss_pred             CCHHHHHHHHHHHHhcCCHH-HHHHHHHHHHHCCCCCCH-HHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCccHHHHHH
Q 000951          523 PNSITFDCMIDGYGTLGDGL-KAFSMFDEMVKLGHHPSI-FTYGSLLKGLCKGGNLKEAKRFLNSLHHIPSAVDTVAYNT  600 (1211)
Q Consensus       523 p~~~~~~~li~~~~~~g~~~-~A~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~  600 (1211)
                      |...+|.-+   ..+.+... .|..-|.+    ...++. .....++..+.+.+.++.++++..    ..+. +. .  .
T Consensus       281 ~~~~~~~~~---l~r~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~-~~-~--~  345 (987)
T PRK09782        281 AQEKSWLYL---LSKYSANPVQALANYTV----QFADNRQYVVGATLPVLLKEGQYDAAQKLLA----TLPA-NE-M--L  345 (987)
T ss_pred             CccHHHHHH---HHhccCchhhhccchhh----hhHHHHHHHHHHHHHHHHhccHHHHHHHHhc----CCCc-ch-H--H
Confidence            333333333   22333221 11111111    011111 111223555666666665554421    1111 11 1  1


Q ss_pred             HHHHH--HHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHH
Q 000951          601 ILAET--CKSGNLWEAIVLLDEMVQFNLLPDRYTYTILLAGLCRKGKVVSALLFFEKVVSK-RTFSPNNVMFTCLVDGLF  677 (1211)
Q Consensus       601 li~~~--~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~p~~~~~~~l~~~~~  677 (1211)
                      .....  ...+...+|...+..|.+.. +-+.....-+.....+.|+.++|..+|++.... +...++......++..|.
T Consensus       346 ~~r~~~~~~~~~~~~~~~~~~~~y~~~-~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~  424 (987)
T PRK09782        346 EERYAVSVATRNKAEALRLARLLYQQE-PANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLE  424 (987)
T ss_pred             HHHHhhccccCchhHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHH
Confidence            11111  12355666666666666531 123333333444455677777777777776651 111223334446666666


Q ss_pred             HcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHH---HHHHHHHHHCCCCC--CHHHHHHHHHHHHccCCh
Q 000951          678 KAGQSKAAMHISKIMDKEGVYPDTIAFNAVMDGFSRMGNMMMA---NDLLSTMRSRKLCP--SLATYNILLHGYSKKKDL  752 (1211)
Q Consensus       678 ~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A---~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~  752 (1211)
                      +.+......++..-..    +++...-      +.-.|+..++   ...+..+... .++  +...|..++.++.. +++
T Consensus       425 ~~~~~~~~~~~~~l~~----~~~~~~~------~~~~~~~~~~~~~~~~~~~al~~-~p~~~~~~a~~~LG~~l~~-~~~  492 (987)
T PRK09782        425 SHPYLATPAKVAILSK----PLPLAEQ------RQWQSQLPGIADNCPAIVRLLGD-MSPSYDAAAWNRLAKCYRD-TLP  492 (987)
T ss_pred             hCCcccchHHHHHhcc----ccccchh------HHHHhhhhhhhhhHHHHHHhccc-CCCCCCHHHHHHHHHHHHh-CCc
Confidence            6665333222211110    0111100      1112333222   2223333221 122  45566666666665 666


Q ss_pred             HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHHH
Q 000951          753 LMCSMLLNTMKMEGLLPDKLTCHSLILGFCETGMLEVGFKFLKKMIAEGTMVDCFTFNVLMRKCCEAGEMGKAFDLFNIM  832 (1211)
Q Consensus       753 ~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~  832 (1211)
                      ++|+..|.+...  ..|+......+..++...|++++|+..++++...  +|+...+..++.++.+.|++++|.+.|+++
T Consensus       493 ~eAi~a~~~Al~--~~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qA  568 (987)
T PRK09782        493 GVALYAWLQAEQ--RQPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQA  568 (987)
T ss_pred             HHHHHHHHHHHH--hCCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            667776666665  3455443333344445667777777777766542  333344555566666777777777777777


Q ss_pred             HHCCCCCChhhHHHHHHHHHhhcchhhHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCchH
Q 000951          833 NMLGVVPDTNTQDAIIMGLKRIAAFQESHFVLRGMAEKGLTPKCTQYITLINGMCRVGNFQGAFKLKDEMEALGISSSDV  912 (1211)
Q Consensus       833 ~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~  912 (1211)
                      ++.. ++....+..+...+...|++++|+..|+++++  ..|+...+..++.++.+.|++++|+..|+++++.. |.+..
T Consensus       569 L~l~-P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~--l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~-Pd~~~  644 (987)
T PRK09782        569 EQRG-LGDNALYWWLHAQRYIPGQPELALNDLTRSLN--IAPSANAYVARATIYRQRHNVPAAVSDLRAALELE-PNNSN  644 (987)
T ss_pred             HhcC-CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHH--hCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHH
Confidence            6543 11222222333333444777777777777776  66666666777777777777777777777776652 55556


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhCCcccCHHHHHHHHHHhhhhCCHHHHHHHHHHHHhcCCCCchH-HHHHHHHHH
Q 000951          913 AESAMVRGLAHCGKVEEAMLVLNRMLRMRLVPTIATFTTLIHKFCKEAKFVDALKLKGTMELSGVKLDVV-SYNVLISGL  991 (1211)
Q Consensus       913 ~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~p~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~  991 (1211)
                      +++.++.++...|++++|+..|+++++..|. ++..+..++.++...|++++|+..|+...+.  .|+.. +....++..
T Consensus       645 a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~-~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l--~P~~a~i~~~~g~~~  721 (987)
T PRK09782        645 YQAALGYALWDSGDIAQSREMLERAHKGLPD-DPALIRQLAYVNQRLDDMAATQHYARLVIDD--IDNQALITPLTPEQN  721 (987)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCCchhhhhhhHHH
Confidence            6667777777777777777777777776654 6667777777777777777777776655544  66543 555666666


Q ss_pred             HhCCChhHHHHHHHHHH
Q 000951          992 CANGDVMPAFELYEEMK 1008 (1211)
Q Consensus       992 ~~~g~~~~a~~~~~~~~ 1008 (1211)
                      ....+++.+.+.++...
T Consensus       722 ~~~~~~~~a~~~~~r~~  738 (987)
T PRK09782        722 QQRFNFRRLHEEVGRRW  738 (987)
T ss_pred             HHHHHHHHHHHHHHHHh
Confidence            66666666666655543

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.97  E-value=1.3e-24  Score=267.31  Aligned_cols=679  Identities=11%  Similarity=0.003  Sum_probs=351.4

Q ss_pred             cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 000951          223 KGRYKAAFKLIDCMASKGIEADVCTYNMFIDDLCRNNRSAKGYLLLKNMRKRMITPNEVTYNTLINGFVKEGKIQVASRV  302 (1211)
Q Consensus       223 ~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~  302 (1211)
                      .|++++|+..|+...+.. +-+..++..|...|...|++++|...+++..+..+ -|...+..+ .   ..++.++|..+
T Consensus        57 ~Gd~~~A~~~l~~Al~~d-P~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP-~n~~~~~~L-a---~i~~~~kA~~~  130 (987)
T PRK09782         57 NNDEATAIREFEYIHQQV-PDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRHP-GDARLERSL-A---AIPVEVKSVTT  130 (987)
T ss_pred             CCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCc-ccHHHHHHH-H---HhccChhHHHH
Confidence            377777777777776643 22355566666666777777777777766666533 233333333 1   12666666677


Q ss_pred             HHHHHhCCCCCChHHHHHHHHH--------HHhcCCHHHHHHHHHHHHHCCCCcCHhHHHHH-HHHHHhcCChHHHHHHH
Q 000951          303 FDEMSMLNFSPNSITYNELIDG--------HCCKGNFKEAFRLLAMMEEMGLRPNEVSYGAL-LNGFCKHAKFDLARSLL  373 (1211)
Q Consensus       303 ~~~m~~~g~~~~~~~~~~li~~--------~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l-l~~~~~~g~~~~a~~l~  373 (1211)
                      ++++.... +-+..++..+...        |.+.   ++|.+.++ .......|+..+.... .+.|...++++.|..++
T Consensus       131 ye~l~~~~-P~n~~~~~~la~~~~~~~~l~y~q~---eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL  205 (987)
T PRK09782        131 VEELLAQQ-KACDAVPTLRCRSEVGQNALRLAQL---PVARAQLN-DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLY  205 (987)
T ss_pred             HHHHHHhC-CCChhHHHHHHHHhhccchhhhhhH---HHHHHHHH-HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHH
Confidence            77766653 2233334433333        4444   33333333 2222223334433333 56666666666666666


Q ss_pred             HHHHHCCCCcCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 000951          374 ERMRTNGISISCIAYTSVIDGLCK-CGLLDEAMQLFNKMFKDGLNPDLITFSVLINGFCKVGMTRKAKAVLCKMYRDGLV  452 (1211)
Q Consensus       374 ~~~~~~~~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~  452 (1211)
                      .++.+.+ +.+......|...|.. .++ ++|..++...    ++-+...+..+...|.+.|+.++|..++.++...-..
T Consensus       206 ~~L~k~~-pl~~~~~~~L~~ay~q~l~~-~~a~al~~~~----lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~  279 (987)
T PRK09782        206 NEARQQN-TLSAAERRQWFDVLLAGQLD-DRLLALQSQG----IFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTT  279 (987)
T ss_pred             HHHHhcC-CCCHHHHHHHHHHHHHhhCH-HHHHHHhchh----cccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccC
Confidence            6666665 2334445555556655 355 5555554432    2235566666666666666666666666665432111


Q ss_pred             -CCHHHHHHHHHHHHHcCCHH-HHHHHHHHHHHcCCCCC-HHHHHHHHHHHHcCCChHHHHHHHHHHHhcCCCCCHHHHH
Q 000951          453 -PNKIIYSTLIYYFCKMGKVT-EAMKVYAVMNRNAQGSD-HFTCNMLVASLCKGGKVCEAEDYVGHMKRIGVVPNSITFD  529 (1211)
Q Consensus       453 -p~~~~~~~li~~~~~~g~~~-~A~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~  529 (1211)
                       |...++-.+   +.+.+... .|..-|..  .  ..++ ....-.++..+.+.+.++.+.++..               
T Consensus       280 ~~~~~~~~~~---l~r~~~~~~~~~~~~~~--~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------  337 (987)
T PRK09782        280 DAQEKSWLYL---LSKYSANPVQALANYTV--Q--FADNRQYVVGATLPVLLKEGQYDAAQKLLA---------------  337 (987)
T ss_pred             CCccHHHHHH---HHhccCchhhhccchhh--h--hHHHHHHHHHHHHHHHHhccHHHHHHHHhc---------------
Confidence             333222222   22222221 01111100  0  0000 0111122344444444443332211               


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHHcC
Q 000951          530 CMIDGYGTLGDGLKAFSMFDEMVKLGHHPSIFTYGSLLKGLCKGGNLKEAKRFLNSLHHIPSAVDTVAYNTILAETCKSG  609 (1211)
Q Consensus       530 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g  609 (1211)
                                                +.|.......-..+....+...++.+.+..+.+..+. +......+.-...+.|
T Consensus       338 --------------------------~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~~~~-~~~~l~q~~~~~~~~~  390 (987)
T PRK09782        338 --------------------------TLPANEMLEERYAVSVATRNKAEALRLARLLYQQEPA-NLTRLDQLTWQLMQNG  390 (987)
T ss_pred             --------------------------CCCcchHHHHHHhhccccCchhHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcc
Confidence                                      1222211100000111223444444444444443222 3333333333444555


Q ss_pred             CHHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhCCC---hHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCCHHH
Q 000951          610 NLWEAIVLLDEMVQF--NLLPDRYTYTILLAGLCRKGK---VVSALLFFEKVVSKRTFSPNNVMFTCLVDGLFKAGQSKA  684 (1211)
Q Consensus       610 ~~~~A~~~~~~m~~~--~~~p~~~~~~~li~~~~~~g~---~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~  684 (1211)
                      +.++|.++|+.....  +-.++......++..|...+.   ..++..+-..+        +...-      +.-.|+..+
T Consensus       391 ~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~--------~~~~~------~~~~~~~~~  456 (987)
T PRK09782        391 QSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPL--------PLAEQ------RQWQSQLPG  456 (987)
T ss_pred             cHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhcccc--------ccchh------HHHHhhhhh
Confidence            666666666555441  011122223345555555544   22222221111        11000      111223322


Q ss_pred             HHHH---HHHHHhCCCCC--CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHH
Q 000951          685 AMHI---SKIMDKEGVYP--DTIAFNAVMDGFSRMGNMMMANDLLSTMRSRKLCPSLATYNILLHGYSKKKDLLMCSMLL  759 (1211)
Q Consensus       685 A~~~---~~~~~~~g~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~  759 (1211)
                      +...   +..+... .++  +...|..+..++.. |+.++|...+.+....  .|+......++.++...|++++|+..|
T Consensus       457 ~~~~~~~~~~al~~-~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~  532 (987)
T PRK09782        457 IADNCPAIVRLLGD-MSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQHRAVAYQAYQVEDYATALAAW  532 (987)
T ss_pred             hhhhHHHHHHhccc-CCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchHHHHHHHHHHHHCCCHHHHHHHH
Confidence            2222   2222211 022  44555556655554 6666677766666543  344333333444445677777777777


Q ss_pred             HHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHHHHHCCCCC
Q 000951          760 NTMKMEGLLPDKLTCHSLILGFCETGMLEVGFKFLKKMIAEGTMVDCFTFNVLMRKCCEAGEMGKAFDLFNIMNMLGVVP  839 (1211)
Q Consensus       760 ~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~  839 (1211)
                      +++..  ..|+...+..++.++.+.|++++|..+++++++.. +.+...+..+.......|++++|+..|+++++.  .|
T Consensus       533 rka~~--~~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--~P  607 (987)
T PRK09782        533 QKISL--HDMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQRYIPGQPELALNDLTRSLNI--AP  607 (987)
T ss_pred             HHHhc--cCCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CC
Confidence            77654  23444445556666677777777777777777643 112222223333344457777777777777764  35


Q ss_pred             ChhhHHHHHHHHHhhcchhhHHHHHHHHHHcCCCCCh-hHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCchHHHHHHH
Q 000951          840 DTNTQDAIIMGLKRIAAFQESHFVLRGMAEKGLTPKC-TQYITLINGMCRVGNFQGAFKLKDEMEALGISSSDVAESAMV  918 (1211)
Q Consensus       840 ~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~  918 (1211)
                      +...|..++.++.+.|++++|+..|+++++  ..|+. ..+..++.++...|++++|+..|+++++. .|.+..++..++
T Consensus       608 ~~~a~~~LA~~l~~lG~~deA~~~l~~AL~--l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l-~P~~~~a~~nLA  684 (987)
T PRK09782        608 SANAYVARATIYRQRHNVPAAVSDLRAALE--LEPNNSNYQAALGYALWDSGDIAQSREMLERAHKG-LPDDPALIRQLA  684 (987)
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHH
Confidence            566777777777777777777777777777  67754 66777777777778888888888777765 255666777777


Q ss_pred             HHHHhcCCHHHHHHHHHHHHhCCcccCHHHHHHHHHHhhhhCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhCCC
Q 000951          919 RGLAHCGKVEEAMLVLNRMLRMRLVPTIATFTTLIHKFCKEAKFVDALKLKGTMELSGVKLDVVSYNVLISGLCANGD  996 (1211)
Q Consensus       919 ~~~~~~g~~~eA~~~~~~~~~~~~~p~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~  996 (1211)
                      .++...|++++|+..|+++++..|. +..+....+.......+++.|.+.++.....  +|+..+....+..+...++
T Consensus       685 ~al~~lGd~~eA~~~l~~Al~l~P~-~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~--~~~~~a~~~~g~~~~~~~~  759 (987)
T PRK09782        685 YVNQRLDDMAATQHYARLVIDDIDN-QALITPLTPEQNQQRFNFRRLHEEVGRRWTF--SFDSSIGLRSGAMSTANNN  759 (987)
T ss_pred             HHHHHCCCHHHHHHHHHHHHhcCCC-CchhhhhhhHHHHHHHHHHHHHHHHHHHhhc--CccchhccccchHhhhccc
Confidence            7888888888888888888777654 6667777777777777777777766544433  5655544444444444443

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.97  E-value=8.9e-28  Score=256.98  Aligned_cols=450  Identities=17%  Similarity=0.124  Sum_probs=207.1

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHHc
Q 000951          529 DCMIDGYGTLGDGLKAFSMFDEMVKLGHHPSIFTYGSLLKGLCKGGNLKEAKRFLNSLHHIPSAVDTVAYNTILAETCKS  608 (1211)
Q Consensus       529 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~  608 (1211)
                      ..|..-..+.|++.+|.+.....-..+ +.+......+-..+....+++...+.-....+..+. -..+|..+...+-..
T Consensus        52 l~lah~~yq~gd~~~a~~h~nmv~~~d-~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~q-~ae~ysn~aN~~ker  129 (966)
T KOG4626|consen   52 LELAHRLYQGGDYKQAEKHCNMVGQED-PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNPQ-GAEAYSNLANILKER  129 (966)
T ss_pred             HHHHHHHHhccCHHHHHHHHhHhhccC-CCcccceeeehhhhhcccchhhhhhhhhhhhhccch-HHHHHHHHHHHHHHh
Confidence            334444455666666665544433221 111222222222334444444443333333333222 234455555555555


Q ss_pred             CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCCHHH-HHHHHHHHHHcCCHHHHHH
Q 000951          609 GNLWEAIVLLDEMVQFNLLPDRYTYTILLAGLCRKGKVVSALLFFEKVVSKRTFSPNNVM-FTCLVDGLFKAGQSKAAMH  687 (1211)
Q Consensus       609 g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~-~~~l~~~~~~~g~~~~A~~  687 (1211)
                      |++++|+..++.+++.. +.....|..+..++...|+.+.|.+.|.++++   +.|+... .+.+...+-..|+.++|..
T Consensus       130 g~~~~al~~y~~aiel~-p~fida~inla~al~~~~~~~~a~~~~~~alq---lnP~l~ca~s~lgnLlka~Grl~ea~~  205 (966)
T KOG4626|consen  130 GQLQDALALYRAAIELK-PKFIDAYINLAAALVTQGDLELAVQCFFEALQ---LNPDLYCARSDLGNLLKAEGRLEEAKA  205 (966)
T ss_pred             chHHHHHHHHHHHHhcC-chhhHHHhhHHHHHHhcCCCcccHHHHHHHHh---cCcchhhhhcchhHHHHhhcccchhHH
Confidence            55555555555555532 11233455555555555555555555555555   3344322 2223333333455555555


Q ss_pred             HHHHHHhCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCChHHHHHHHHHHHHC
Q 000951          688 ISKIMDKEGVYPD-TIAFNAVMDGFSRMGNMMMANDLLSTMRSRKLCP-SLATYNILLHGYSKKKDLLMCSMLLNTMKME  765 (1211)
Q Consensus       688 ~~~~~~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  765 (1211)
                      .|.++++.  .|. ...|..|...+..+|+...|+..|++..  .+.| -...|..|+..|...+.+++|+..|.+++. 
T Consensus       206 cYlkAi~~--qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAv--kldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~-  280 (966)
T KOG4626|consen  206 CYLKAIET--QPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAV--KLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALN-  280 (966)
T ss_pred             HHHHHHhh--CCceeeeehhcchHHhhcchHHHHHHHHHHhh--cCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHh-
Confidence            55554433  222 2334444444445555555555555554  2344 244455555555555555555555555444 


Q ss_pred             CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HhhHHHHHHHHHhcCcHHHHHHHHHHHHHCCCCCC-hh
Q 000951          766 GLLPD-KLTCHSLILGFCETGMLEVGFKFLKKMIAEGTMVD-CFTFNVLMRKCCEAGEMGKAFDLFNIMNMLGVVPD-TN  842 (1211)
Q Consensus       766 g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~  842 (1211)
                       ..|+ .+.+..+...|.++|..|.|++.|+++++  ..|+ +..|+.|..++-..|+..+|.+.|++++..  .|+ ..
T Consensus       281 -lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~--~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l--~p~had  355 (966)
T KOG4626|consen  281 -LRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALE--LQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRL--CPNHAD  355 (966)
T ss_pred             -cCCcchhhccceEEEEeccccHHHHHHHHHHHHh--cCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHh--CCccHH
Confidence             3342 23344444455555555555555555544  2333 344555555555555555555555555432  122 44


Q ss_pred             hHHHHHHHHHhhcchhhHHHHHHHHHHcCCCCCh-hHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCchHHHHHHHHHH
Q 000951          843 TQDAIIMGLKRIAAFQESHFVLRGMAEKGLTPKC-TQYITLINGMCRVGNFQGAFKLKDEMEALGISSSDVAESAMVRGL  921 (1211)
Q Consensus       843 ~~~~l~~~~~~~g~~~eA~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~  921 (1211)
                      +.++|+.+|...|++++|..+|.++++  +.|+. ...+.|+..|-++|++++|+..|++++... |.-..+++.++..|
T Consensus       356 am~NLgni~~E~~~~e~A~~ly~~al~--v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~-P~fAda~~NmGnt~  432 (966)
T KOG4626|consen  356 AMNNLGNIYREQGKIEEATRLYLKALE--VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIK-PTFADALSNMGNTY  432 (966)
T ss_pred             HHHHHHHHHHHhccchHHHHHHHHHHh--hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcC-chHHHHHHhcchHH
Confidence            445555555555555555555555554  44442 444555555555555555555555554331 22233445555555


Q ss_pred             HhcCCHHHHHHHHHHHHhCCcccCHHHHHHHHHHhhhhCCHHHHHHHHHHHHhcCCCCchH-HHHHHHHHHHhCCChhHH
Q 000951          922 AHCGKVEEAMLVLNRMLRMRLVPTIATFTTLIHKFCKEAKFVDALKLKGTMELSGVKLDVV-SYNVLISGLCANGDVMPA 1000 (1211)
Q Consensus       922 ~~~g~~~eA~~~~~~~~~~~~~p~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~a 1000 (1211)
                      ...|+.+.|+..|.+++..+|. -+.+..+|+.+|...|+.++|++.|+....  ++||.+ +|.+++.++.--.+|.+-
T Consensus       433 ke~g~v~~A~q~y~rAI~~nPt-~AeAhsNLasi~kDsGni~~AI~sY~~aLk--lkPDfpdA~cNllh~lq~vcdw~D~  509 (966)
T KOG4626|consen  433 KEMGDVSAAIQCYTRAIQINPT-FAEAHSNLASIYKDSGNIPEAIQSYRTALK--LKPDFPDAYCNLLHCLQIVCDWTDY  509 (966)
T ss_pred             HHhhhHHHHHHHHHHHHhcCcH-HHHHHhhHHHHhhccCCcHHHHHHHHHHHc--cCCCCchhhhHHHHHHHHHhcccch
Confidence            5555555555555555544432 344445555555555555555555443332  245443 444444444444444443

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=99.97  E-value=1.9e-24  Score=245.21  Aligned_cols=612  Identities=12%  Similarity=0.057  Sum_probs=431.1

Q ss_pred             HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhcC--CCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 000951          471 VTEAMKVYAVMNRNAQGSDHFTCNMLVASLCKGGKVCEAEDYVGHMKRIG--VVPNSITFDCMIDGYGTLGDGLKAFSMF  548 (1211)
Q Consensus       471 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g--~~p~~~~~~~li~~~~~~g~~~~A~~~~  548 (1211)
                      ++.|.+.|..+.+..+. ++-..-.-.......+++..|+.+|...+...  ..||+  .-.+...+.+.|+.+.|+..|
T Consensus       146 ~~~A~a~F~~Vl~~sp~-Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~--rIgig~Cf~kl~~~~~a~~a~  222 (1018)
T KOG2002|consen  146 MDDADAQFHFVLKQSPD-NILALLGKARIAYNKKDYRGALKYYKKALRINPACKADV--RIGIGHCFWKLGMSEKALLAF  222 (1018)
T ss_pred             HHHHHHHHHHHHhhCCc-chHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCc--cchhhhHHHhccchhhHHHHH
Confidence            57777777777766443 44444333444556677888888887765432  23333  222335556778888888888


Q ss_pred             HHHHHCCCCCCH-HHHHHHHHHH---HcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 000951          549 DEMVKLGHHPSI-FTYGSLLKGL---CKGGNLKEAKRFLNSLHHIPSAVDTVAYNTILAETCKSGNLWEAIVLLDEMVQF  624 (1211)
Q Consensus       549 ~~m~~~~~~p~~-~~~~~ll~~~---~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~  624 (1211)
                      .+.++.  .|+. .++..|...-   .....+..+...+.......+. ++.+.+.|...|...|++..+..+...+...
T Consensus       223 ~ralqL--dp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~-nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~  299 (1018)
T KOG2002|consen  223 ERALQL--DPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNE-NPVALNHLANHFYFKKDYERVWHLAEHAIKN  299 (1018)
T ss_pred             HHHHhc--ChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCC-CcHHHHHHHHHHhhcccHHHHHHHHHHHHHh
Confidence            888764  3432 2222221111   1223466677777777666554 7788888888888999999999888888774


Q ss_pred             CCCC--CHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC
Q 000951          625 NLLP--DRYTYTILLAGLCRKGKVVSALLFFEKVVSKRTFSPN--NVMFTCLVDGLFKAGQSKAAMHISKIMDKEGVYPD  700 (1211)
Q Consensus       625 ~~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~  700 (1211)
                      ...-  -..+|..+..+|...|++++|..+|.+..+..   |+  ...+..|+..+.+.|+++.+...|+.+.+. .+.+
T Consensus       300 t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~---~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~-~p~~  375 (1018)
T KOG2002|consen  300 TENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKAD---NDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQ-LPNN  375 (1018)
T ss_pred             hhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccC---CCCccccccchhHHHHHhchHHHHHHHHHHHHHh-Ccch
Confidence            3111  12336778888888999999999998888743   44  455677888999999999999999988765 2444


Q ss_pred             HHHHHHHHHHHHhcC----ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHH----HCCCCCCHH
Q 000951          701 TIAFNAVMDGFSRMG----NMMMANDLLSTMRSRKLCPSLATYNILLHGYSKKKDLLMCSMLLNTMK----MEGLLPDKL  772 (1211)
Q Consensus       701 ~~~~~~li~~~~~~g----~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~g~~p~~~  772 (1211)
                      ..+...|...|...+    ..+.|..++.+..+. .+.|...|..+...+....-+. ++..|..+.    ..+-.+...
T Consensus       376 ~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~-~~~d~~a~l~laql~e~~d~~~-sL~~~~~A~d~L~~~~~~ip~E  453 (1018)
T KOG2002|consen  376 YETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQ-TPVDSEAWLELAQLLEQTDPWA-SLDAYGNALDILESKGKQIPPE  453 (1018)
T ss_pred             HHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhc-ccccHHHHHHHHHHHHhcChHH-HHHHHHHHHHHHHHcCCCCCHH
Confidence            566667777777654    557777777777754 2237888888888776644444 477777655    334446777


Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHHc---CCCCC------HhhHHHHHHHHHhcCcHHHHHHHHHHHHHCCCCCC-hh
Q 000951          773 TCHSLILGFCETGMLEVGFKFLKKMIAE---GTMVD------CFTFNVLMRKCCEAGEMGKAFDLFNIMNMLGVVPD-TN  842 (1211)
Q Consensus       773 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~  842 (1211)
                      ..|.++..+...|++.+|...+..+...   ...+|      ..+-..+..++...++++.|.+.|..+++..  |. ..
T Consensus       454 ~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkeh--p~YId  531 (1018)
T KOG2002|consen  454 VLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEH--PGYID  531 (1018)
T ss_pred             HHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHC--chhHH
Confidence            8888888888999999999999888765   12223      2345567778888889999999999988742  43 45


Q ss_pred             hHHHHHHHHHhhcchhhHHHHHHHHHHcCCCC-ChhHHHHHHHHHHhcCChhhHHHHHHHHHHcC-CCCchHHHHHHHHH
Q 000951          843 TQDAIIMGLKRIAAFQESHFVLRGMAEKGLTP-KCTQYITLINGMCRVGNFQGAFKLKDEMEALG-ISSSDVAESAMVRG  920 (1211)
Q Consensus       843 ~~~~l~~~~~~~g~~~eA~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~-~~~~~~~~~~l~~~  920 (1211)
                      .|.-++..-...++..+|..+++.+++  ++. ++..+..+++.+.....|.-|.+-|+.+.+.. ..+|..+.-.||..
T Consensus       532 ~ylRl~~ma~~k~~~~ea~~~lk~~l~--~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~  609 (1018)
T KOG2002|consen  532 AYLRLGCMARDKNNLYEASLLLKDALN--IDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNV  609 (1018)
T ss_pred             HHHHhhHHHHhccCcHHHHHHHHHHHh--cccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHH
Confidence            555555444556788899999999887  433 44667777888888889999999888886432 23566666677776


Q ss_pred             HHhc------------CCHHHHHHHHHHHHhCCcccCHHHHHHHHHHhhhhCCHHHHHHHHHHHHhcCCCCchHHHHHHH
Q 000951          921 LAHC------------GKVEEAMLVLNRMLRMRLVPTIATFTTLIHKFCKEAKFVDALKLKGTMELSGVKLDVVSYNVLI  988 (1211)
Q Consensus       921 ~~~~------------g~~~eA~~~~~~~~~~~~~p~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~  988 (1211)
                      +.+.            +.+++|+++|.++++.+|. |..+-+.+|.+++..|++.+|..+|.+.++... -...+|.+++
T Consensus       610 ~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpk-N~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~-~~~dv~lNla  687 (1018)
T KOG2002|consen  610 YIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPK-NMYAANGIGIVLAEKGRFSEARDIFSQVREATS-DFEDVWLNLA  687 (1018)
T ss_pred             HHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcc-hhhhccchhhhhhhccCchHHHHHHHHHHHHHh-hCCceeeeHH
Confidence            5432            5688999999999999877 999999999999999999999999999887632 2456899999


Q ss_pred             HHHHhCCChhHHHHHHHHHHHcCCccCh-hhHHHHHHHHHhcccchHHHHHHHHHHHHcCCcccCCCCcccchhhhHHHH
Q 000951          989 SGLCANGDVMPAFELYEEMKHKGLCPNS-TTYSVLIDAISKKENNLVKGEILLKDIQERGFISWNWDGSTQHLHEGLINA 1067 (1211)
Q Consensus       989 ~~~~~~g~~~~a~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~~~~~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~ 1067 (1211)
                      .+|...|+|-.|+++|+...++-...+. .....+..+++..|.+.++.+.++.++......+.        ........
T Consensus       688 h~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~--------v~FN~a~v  759 (1018)
T KOG2002|consen  688 HCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTS--------VKFNLALV  759 (1018)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccch--------HHhHHHHH
Confidence            9999999999999999986654445544 89999999999999999988888888888765442        22233344


Q ss_pred             HHHH-HHhhhhccCCCCCChhHHhhCchhHHHHHHHHHHHHHHHhhhccCCCC
Q 000951         1068 LRKL-KSFKKNRRNNAKIDPTFMEALPEDLLAEVLASQQASSIAQGLAHHGEG 1119 (1211)
Q Consensus      1068 l~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~e~ 1119 (1211)
                      +.++ .+.++.-..   .        .+++...|.+.+.+.++|+.|+.++++
T Consensus       760 ~kkla~s~lr~~k~---t--------~eev~~a~~~le~a~r~F~~ls~~~d~  801 (1018)
T KOG2002|consen  760 LKKLAESILRLEKR---T--------LEEVLEAVKELEEARRLFTELSKNGDK  801 (1018)
T ss_pred             HHHHHHHHHhcccc---c--------HHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence            4455 444333221   1        122223333334488899999999998

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.97  E-value=1.4e-27  Score=255.41  Aligned_cols=459  Identities=14%  Similarity=0.133  Sum_probs=302.5

Q ss_pred             HHHHHHHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhC
Q 000951          564 GSLLKGLCKGGNLKEAKRFLNSLHHIPSAVDTVAYNTILAETCKSGNLWEAIVLLDEMVQFNLLPDRYTYTILLAGLCRK  643 (1211)
Q Consensus       564 ~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~  643 (1211)
                      ..|..-..+.|++.+|++--..+-..++. +....-.+-..+.+..+++....--...++.+ +.-..+|..+...+...
T Consensus        52 l~lah~~yq~gd~~~a~~h~nmv~~~d~t-~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~-~q~ae~ysn~aN~~ker  129 (966)
T KOG4626|consen   52 LELAHRLYQGGDYKQAEKHCNMVGQEDPT-NTERLLLLSAIFFQGSRLDKSSAGSLLAIRKN-PQGAEAYSNLANILKER  129 (966)
T ss_pred             HHHHHHHHhccCHHHHHHHHhHhhccCCC-cccceeeehhhhhcccchhhhhhhhhhhhhcc-chHHHHHHHHHHHHHHh
Confidence            33445556667777777665555443332 22333334445556666666555444444432 23455677777777777


Q ss_pred             CChHHHHHHHHHHHHcCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHH-HHHHHHhcCChHHHH
Q 000951          644 GKVVSALLFFEKVVSKRTFSPN-NVMFTCLVDGLFKAGQSKAAMHISKIMDKEGVYPDTIAFNA-VMDGFSRMGNMMMAN  721 (1211)
Q Consensus       644 g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~-li~~~~~~g~~~~A~  721 (1211)
                      |++++|+.+|+.+++.   .|+ ...|..+..++...|+.+.|.+.|.+.++.  .|+.....+ +....-..|++++|.
T Consensus       130 g~~~~al~~y~~aiel---~p~fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lgnLlka~Grl~ea~  204 (966)
T KOG4626|consen  130 GQLQDALALYRAAIEL---KPKFIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLGNLLKAEGRLEEAK  204 (966)
T ss_pred             chHHHHHHHHHHHHhc---CchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--CcchhhhhcchhHHHHhhcccchhH
Confidence            7777777777777773   443 567777777777777777777777777654  555544333 334444577777777


Q ss_pred             HHHHHHHHCCCCC-CHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 000951          722 DLLSTMRSRKLCP-SLATYNILLHGYSKKKDLLMCSMLLNTMKMEGLLPDK-LTCHSLILGFCETGMLEVGFKFLKKMIA  799 (1211)
Q Consensus       722 ~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~  799 (1211)
                      ..+.+.++.  .| -.+.|..|+..+..+|+...|++.|+++..  ++|+- .+|..|+..|.+.+.+++|+..|.+++.
T Consensus       205 ~cYlkAi~~--qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvk--ldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~  280 (966)
T KOG4626|consen  205 ACYLKAIET--QPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVK--LDPNFLDAYINLGNVYKEARIFDRAVSCYLRALN  280 (966)
T ss_pred             HHHHHHHhh--CCceeeeehhcchHHhhcchHHHHHHHHHHhhc--CCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHh
Confidence            777777743  45 356677777777777777777777777776  56643 4666777777777777777777777776


Q ss_pred             cCCCCC-HhhHHHHHHHHHhcCcHHHHHHHHHHHHHCCCCCC-hhhHHHHHHHHHhhcchhhHHHHHHHHHHcCCCCCh-
Q 000951          800 EGTMVD-CFTFNVLMRKCCEAGEMGKAFDLFNIMNMLGVVPD-TNTQDAIIMGLKRIAAFQESHFVLRGMAEKGLTPKC-  876 (1211)
Q Consensus       800 ~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~g~~p~~-  876 (1211)
                        ..|+ ..++-.+...|..+|.++-|+..|+++++  +.|+ ++.|++|+.++...|+..||+..|++++.  ..|+. 
T Consensus       281 --lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~--~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~--l~p~ha  354 (966)
T KOG4626|consen  281 --LRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALE--LQPNFPDAYNNLANALKDKGSVTEAVDCYNKALR--LCPNHA  354 (966)
T ss_pred             --cCCcchhhccceEEEEeccccHHHHHHHHHHHHh--cCCCchHHHhHHHHHHHhccchHHHHHHHHHHHH--hCCccH
Confidence              3444 44566666677777777777777777775  3455 66777777777777777777777777777  67764 


Q ss_pred             hHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCcccCHHHHHHHHHHh
Q 000951          877 TQYITLINGMCRVGNFQGAFKLKDEMEALGISSSDVAESAMVRGLAHCGKVEEAMLVLNRMLRMRLVPTIATFTTLIHKF  956 (1211)
Q Consensus       877 ~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~p~~~~~~~L~~~~  956 (1211)
                      .+.+.|+++|..+|..++|..+|.++.+. .+.-..+++.|+.+|.++|++++|+..|+++++..|. -+.++.++|..|
T Consensus       355 dam~NLgni~~E~~~~e~A~~ly~~al~v-~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~-fAda~~NmGnt~  432 (966)
T KOG4626|consen  355 DAMNNLGNIYREQGKIEEATRLYLKALEV-FPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPT-FADALSNMGNTY  432 (966)
T ss_pred             HHHHHHHHHHHHhccchHHHHHHHHHHhh-ChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCch-HHHHHHhcchHH
Confidence            67777777777777777777777777765 3455666777777777777777777777777775543 556777777777


Q ss_pred             hhhCCHHHHHHHHHHHHhcCCCCchH-HHHHHHHHHHhCCChhHHHHHHHHHHHcCCccCh-hhHHHHHHHH---Hhccc
Q 000951          957 CKEAKFVDALKLKGTMELSGVKLDVV-SYNVLISGLCANGDVMPAFELYEEMKHKGLCPNS-TTYSVLIDAI---SKKEN 1031 (1211)
Q Consensus       957 ~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~p~~-~~~~~l~~~~---~~~~~ 1031 (1211)
                      ...|+...|++.|...  ..++|... +..+|+++|..+|...+|+.-|+..++  ++||. ..+..+...+   +....
T Consensus       433 ke~g~v~~A~q~y~rA--I~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLk--lkPDfpdA~cNllh~lq~vcdw~D  508 (966)
T KOG4626|consen  433 KEMGDVSAAIQCYTRA--IQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALK--LKPDFPDAYCNLLHCLQIVCDWTD  508 (966)
T ss_pred             HHhhhHHHHHHHHHHH--HhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHc--cCCCCchhhhHHHHHHHHHhcccc
Confidence            7777777777775533  33467544 667777777777777777777777754  56666 5555555443   23333


Q ss_pred             chHHHHHHHHHHHH
Q 000951         1032 NLVKGEILLKDIQE 1045 (1211)
Q Consensus      1032 ~~~~a~~~~~~l~~ 1045 (1211)
                      .++.-.+++..+++
T Consensus       509 ~d~~~~kl~sivrd  522 (966)
T KOG4626|consen  509 YDKRMKKLVSIVRD  522 (966)
T ss_pred             hHHHHHHHHHHHHH
Confidence            34434444444443

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=99.95  E-value=7.5e-22  Score=224.37  Aligned_cols=554  Identities=12%  Similarity=0.025  Sum_probs=338.8

Q ss_pred             HHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 000951          401 LDEAMQLFNKMFKDGLNPDLITFSVLINGFCKVGMTRKAKAVLCKMYRD--GLVPNKIIYSTLIYYFCKMGKVTEAMKVY  478 (1211)
Q Consensus       401 ~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~~~~~~~li~~~~~~g~~~~A~~~~  478 (1211)
                      ++.|...|...++.. ++|+-.+---.......|++-.|+.+|..++..  ...||+..  .+..++.+.++.+.|+..|
T Consensus       146 ~~~A~a~F~~Vl~~s-p~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rI--gig~Cf~kl~~~~~a~~a~  222 (1018)
T KOG2002|consen  146 MDDADAQFHFVLKQS-PDNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRI--GIGHCFWKLGMSEKALLAF  222 (1018)
T ss_pred             HHHHHHHHHHHHhhC-CcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccc--hhhhHHHhccchhhHHHHH
Confidence            466666666666552 223333322223334556677777777665443  23444332  2334555667777777777


Q ss_pred             HHHHHcCCCCCHHHHHHHHHHHHcC---CChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 000951          479 AVMNRNAQGSDHFTCNMLVASLCKG---GKVCEAEDYVGHMKRIGVVPNSITFDCMIDGYGTLGDGLKAFSMFDEMVKLG  555 (1211)
Q Consensus       479 ~~~~~~~~~~~~~~~~~li~~~~~~---g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~  555 (1211)
                      ..++..++. ++.++-.|...-...   ..+..+...+...-... .-|++..+.|.+.|.-.|++..++.+...+....
T Consensus       223 ~ralqLdp~-~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n-~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t  300 (1018)
T KOG2002|consen  223 ERALQLDPT-CVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKEN-NENPVALNHLANHFYFKKDYERVWHLAEHAIKNT  300 (1018)
T ss_pred             HHHHhcChh-hHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhc-CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhh
Confidence            766665442 333333332222222   23344444444444332 2356667777777777777777777777766543


Q ss_pred             CCC--CHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 000951          556 HHP--SIFTYGSLLKGLCKGGNLKEAKRFLNSLHHIPSAVDTVAYNTILAETCKSGNLWEAIVLLDEMVQFNLLPDRYTY  633 (1211)
Q Consensus       556 ~~p--~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~  633 (1211)
                      ..-  -...|-.+..++-..|+++.|...|....+..+......+..++++|.+.|+++.+...|+++.+.. +.+..+.
T Consensus       301 ~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~-p~~~etm  379 (1018)
T KOG2002|consen  301 ENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQL-PNNYETM  379 (1018)
T ss_pred             hhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhC-cchHHHH
Confidence            111  1234556677777777777777777777665554334555667777777888888887777777653 3345556


Q ss_pred             HHHHHHHHhCC----ChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH----HhCCCCCCHHHHH
Q 000951          634 TILLAGLCRKG----KVVSALLFFEKVVSKRTFSPNNVMFTCLVDGLFKAGQSKAAMHISKIM----DKEGVYPDTIAFN  705 (1211)
Q Consensus       634 ~~li~~~~~~g----~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~g~~~~~~~~~  705 (1211)
                      ..|...|...+    ..+.|..+..+.++..  +.|...|..+...+.... ...++.+|..+    ...+-.+.+...|
T Consensus       380 ~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~--~~d~~a~l~laql~e~~d-~~~sL~~~~~A~d~L~~~~~~ip~E~LN  456 (1018)
T KOG2002|consen  380 KILGCLYAHSAKKQEKRDKASNVLGKVLEQT--PVDSEAWLELAQLLEQTD-PWASLDAYGNALDILESKGKQIPPEVLN  456 (1018)
T ss_pred             HHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc--cccHHHHHHHHHHHHhcC-hHHHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence            66666666554    4566677777766643  445666766666655443 33336655544    3444456677777


Q ss_pred             HHHHHHHhcCChHHHHHHHHHHHHC---CCCCCH------HHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHH-HH
Q 000951          706 AVMDGFSRMGNMMMANDLLSTMRSR---KLCPSL------ATYNILLHGYSKKKDLLMCSMLLNTMKMEGLLPDKLT-CH  775 (1211)
Q Consensus       706 ~li~~~~~~g~~~~A~~~~~~~~~~---~~~p~~------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~-~~  775 (1211)
                      .+.......|++.+|...|......   ..++|.      .+-..+...+...++.+.|.+.|..++.  ..|.-+. |.
T Consensus       457 Nvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilk--ehp~YId~yl  534 (1018)
T KOG2002|consen  457 NVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILK--EHPGYIDAYL  534 (1018)
T ss_pred             hHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHH--HCchhHHHHH
Confidence            7777777778888888777777643   122222      2344566666677777888888888777  3465543 33


Q ss_pred             HHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHHHHHCC-CCCChhhHHHHHHHHHh-
Q 000951          776 SLILGFCETGMLEVGFKFLKKMIAEGTMVDCFTFNVLMRKCCEAGEMGKAFDLFNIMNMLG-VVPDTNTQDAIIMGLKR-  853 (1211)
Q Consensus       776 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~-  853 (1211)
                      .++..-...+...+|...++.++.. -..++.++..++..|.+...+..|.+-|....+.- ..+|+.+.-+|++.|.+ 
T Consensus       535 Rl~~ma~~k~~~~ea~~~lk~~l~~-d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~  613 (1018)
T KOG2002|consen  535 RLGCMARDKNNLYEASLLLKDALNI-DSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQA  613 (1018)
T ss_pred             HhhHHHHhccCcHHHHHHHHHHHhc-ccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHH
Confidence            3333333446777777777777764 23455666667777777777777777666554421 12455555666665542 


Q ss_pred             -----------hcchhhHHHHHHHHHHcCCCCCh-hHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCchHHHHHHHHHH
Q 000951          854 -----------IAAFQESHFVLRGMAEKGLTPKC-TQYITLINGMCRVGNFQGAFKLKDEMEALGISSSDVAESAMVRGL  921 (1211)
Q Consensus       854 -----------~g~~~eA~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~  921 (1211)
                                 .+..++|+++|.++++  .+|.+ .+-+.++..+...|++.+|..+|.++.+.. .....+|-.++++|
T Consensus       614 l~~~~rn~ek~kk~~~KAlq~y~kvL~--~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~-~~~~dv~lNlah~~  690 (1018)
T KOG2002|consen  614 LHNPSRNPEKEKKHQEKALQLYGKVLR--NDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREAT-SDFEDVWLNLAHCY  690 (1018)
T ss_pred             hcccccChHHHHHHHHHHHHHHHHHHh--cCcchhhhccchhhhhhhccCchHHHHHHHHHHHHH-hhCCceeeeHHHHH
Confidence                       3456677777777777  67743 666677777778888888888888877653 34556677778888


Q ss_pred             HhcCCHHHHHHHHHHHHhCCc-ccCHHHHHHHHHHhhhhCCHHHHHHHH
Q 000951          922 AHCGKVEEAMLVLNRMLRMRL-VPTIATFTTLIHKFCKEAKFVDALKLK  969 (1211)
Q Consensus       922 ~~~g~~~eA~~~~~~~~~~~~-~p~~~~~~~L~~~~~~~g~~~~A~~~~  969 (1211)
                      ..+|+|-.|+++|+..++.-. ..+..++..|+.++.+.|.+.+|.+..
T Consensus       691 ~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~l  739 (1018)
T KOG2002|consen  691 VEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEAL  739 (1018)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHH
Confidence            888888888888887776533 226677777888888888888887763

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.90  E-value=1.3e-19  Score=221.33  Aligned_cols=429  Identities=11%  Similarity=-0.046  Sum_probs=268.5

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHH
Q 000951          527 TFDCMIDGYGTLGDGLKAFSMFDEMVKLGHHPSIFTYGSLLKGLCKGGNLKEAKRFLNSLHHIPSAVDTVAYNTILAETC  606 (1211)
Q Consensus       527 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~  606 (1211)
                      .+......+.+.|++++|+..|++.++  +.|+...|..+..+|.+.|++++|.+.+..+++..+. +...+..+..+|.
T Consensus       129 ~~k~~G~~~~~~~~~~~Ai~~y~~al~--~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~-~~~a~~~~a~a~~  205 (615)
T TIGR00990       129 KLKEKGNKAYRNKDFNKAIKLYSKAIE--CKPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPD-YSKALNRRANAYD  205 (615)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHH
Confidence            345566677778888888888887775  3566677777777777888888888888887776654 5667777788888


Q ss_pred             HcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 000951          607 KSGNLWEAIVLLDEMVQFNLLPDRYTYTILLAGLCRKGKVVSALLFFEKVVSKRTFSPNNVMFTCLVDGLFKAGQSKAAM  686 (1211)
Q Consensus       607 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~  686 (1211)
                      ..|++++|+..|......+.. +......++.-+..    ..+.......++..  +++...+..+.. +........+.
T Consensus       206 ~lg~~~eA~~~~~~~~~~~~~-~~~~~~~~~~~~l~----~~a~~~~~~~l~~~--~~~~~~~~~~~~-~~~~~~~~~~~  277 (615)
T TIGR00990       206 GLGKYADALLDLTASCIIDGF-RNEQSAQAVERLLK----KFAESKAKEILETK--PENLPSVTFVGN-YLQSFRPKPRP  277 (615)
T ss_pred             HcCCHHHHHHHHHHHHHhCCC-ccHHHHHHHHHHHH----HHHHHHHHHHHhcC--CCCCCCHHHHHH-HHHHccCCcch
Confidence            888888888777666543211 11111111111111    12233333333322  222222222222 22111111111


Q ss_pred             HHHHHHHhCCCCCCH-HHHHHHHHH---HHhcCChHHHHHHHHHHHHCC-CCC-CHHHHHHHHHHHHccCChHHHHHHHH
Q 000951          687 HISKIMDKEGVYPDT-IAFNAVMDG---FSRMGNMMMANDLLSTMRSRK-LCP-SLATYNILLHGYSKKKDLLMCSMLLN  760 (1211)
Q Consensus       687 ~~~~~~~~~g~~~~~-~~~~~li~~---~~~~g~~~~A~~~~~~~~~~~-~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~  760 (1211)
                      .-+....+.  .++. ..+..+...   ....+++++|...|+++.+.+ ..| +...|+.++..+...|++++|+..|+
T Consensus       278 ~~~~~~~~~--~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~  355 (615)
T TIGR00990       278 AGLEDSNEL--DEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLS  355 (615)
T ss_pred             hhhhccccc--ccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            111111110  1110 001111110   123467888888888887643 234 45677777888888888888888888


Q ss_pred             HHHHCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHHHHHCCCCC
Q 000951          761 TMKMEGLLPD-KLTCHSLILGFCETGMLEVGFKFLKKMIAEGTMVDCFTFNVLMRKCCEAGEMGKAFDLFNIMNMLGVVP  839 (1211)
Q Consensus       761 ~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~  839 (1211)
                      ++++  +.|+ ...|..+..++...|++++|+..++++++.. +.+..++..++.+|...|++++|++.|+++++.. +.
T Consensus       356 kal~--l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~  431 (615)
T TIGR00990       356 KSIE--LDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PD  431 (615)
T ss_pred             HHHH--cCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-cc
Confidence            8877  4564 4466677777888888888888888887752 2346677778888888888888888888887643 23


Q ss_pred             ChhhHHHHHHHHHhhcchhhHHHHHHHHHHcCCCCC-hhHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCchH------
Q 000951          840 DTNTQDAIIMGLKRIAAFQESHFVLRGMAEKGLTPK-CTQYITLINGMCRVGNFQGAFKLKDEMEALGISSSDV------  912 (1211)
Q Consensus       840 ~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~------  912 (1211)
                      +...|..++.++.+.|++++|+..|+++++  ..|+ ...+..++.++...|++++|++.|+++++.....+..      
T Consensus       432 ~~~~~~~la~~~~~~g~~~eA~~~~~~al~--~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~  509 (615)
T TIGR00990       432 FIFSHIQLGVTQYKEGSIASSMATFRRCKK--NFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLP  509 (615)
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHH
Confidence            466677788888888888888888888887  6675 4677778888888888888888888887653211111      


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhCCcccCHHHHHHHHHHhhhhCCHHHHHHHHHHHHhc
Q 000951          913 AESAMVRGLAHCGKVEEAMLVLNRMLRMRLVPTIATFTTLIHKFCKEAKFVDALKLKGTMELS  975 (1211)
Q Consensus       913 ~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~p~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~  975 (1211)
                      .+...+..+...|++++|.++++++++.+|. +..++..++.++...|++++|+..|+...+.
T Consensus       510 l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~-~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l  571 (615)
T TIGR00990       510 LINKALALFQWKQDFIEAENLCEKALIIDPE-CDIAVATMAQLLLQQGDVDEALKLFERAAEL  571 (615)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence            1111122333457888888888888877654 5667788888888888888888887766544

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.90  E-value=1.9e-19  Score=219.92  Aligned_cols=427  Identities=14%  Similarity=0.019  Sum_probs=277.9

Q ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 000951          562 TYGSLLKGLCKGGNLKEAKRFLNSLHHIPSAVDTVAYNTILAETCKSGNLWEAIVLLDEMVQFNLLPDRYTYTILLAGLC  641 (1211)
Q Consensus       562 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~  641 (1211)
                      .+......+.+.|++++|...|.++++..+  +...|..+..+|.+.|++++|+..+++.++.+ +.+...|..+..+|.
T Consensus       129 ~~k~~G~~~~~~~~~~~Ai~~y~~al~~~p--~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~  205 (615)
T TIGR00990       129 KLKEKGNKAYRNKDFNKAIKLYSKAIECKP--DPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYD  205 (615)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCC--chHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHH
Confidence            344556666777777777777777766544  45566677777777777777777777777643 224456666777777


Q ss_pred             hCCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHH
Q 000951          642 RKGKVVSALLFFEKVVSKRTFSPNNVMFTCLVDGLFKAGQSKAAMHISKIMDKEGVYPDTIAFNAVMDGFSRMGNMMMAN  721 (1211)
Q Consensus       642 ~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~  721 (1211)
                      ..|++++|+..|..+.......  ......++..+..    ..+........+.. +++...+..+.. |........+.
T Consensus       206 ~lg~~~eA~~~~~~~~~~~~~~--~~~~~~~~~~~l~----~~a~~~~~~~l~~~-~~~~~~~~~~~~-~~~~~~~~~~~  277 (615)
T TIGR00990       206 GLGKYADALLDLTASCIIDGFR--NEQSAQAVERLLK----KFAESKAKEILETK-PENLPSVTFVGN-YLQSFRPKPRP  277 (615)
T ss_pred             HcCCHHHHHHHHHHHHHhCCCc--cHHHHHHHHHHHH----HHHHHHHHHHHhcC-CCCCCCHHHHHH-HHHHccCCcch
Confidence            7777777777776655433111  1111111111111    12222222222221 111112222222 22211111111


Q ss_pred             HHHHHHHHCCCCCC-HHHHHHHHHHH---HccCChHHHHHHHHHHHHCC-CCC-CHHHHHHHHHHHHhcCChHHHHHHHH
Q 000951          722 DLLSTMRSRKLCPS-LATYNILLHGY---SKKKDLLMCSMLLNTMKMEG-LLP-DKLTCHSLILGFCETGMLEVGFKFLK  795 (1211)
Q Consensus       722 ~~~~~~~~~~~~p~-~~~~~~l~~~~---~~~g~~~~A~~~~~~~~~~g-~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~  795 (1211)
                      .-+....  ...|+ ...+..+...+   ...+++++|++.|+++++.+ ..| ....++.++..+...|++++|+..++
T Consensus       278 ~~~~~~~--~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~  355 (615)
T TIGR00990       278 AGLEDSN--ELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLS  355 (615)
T ss_pred             hhhhccc--ccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            1111111  11111 11122222111   23467889999999988754 234 33567777788888999999999999


Q ss_pred             HHHHcCCCCC-HhhHHHHHHHHHhcCcHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhcchhhHHHHHHHHHHcCCCC
Q 000951          796 KMIAEGTMVD-CFTFNVLMRKCCEAGEMGKAFDLFNIMNMLGVVPDTNTQDAIIMGLKRIAAFQESHFVLRGMAEKGLTP  874 (1211)
Q Consensus       796 ~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~g~~p  874 (1211)
                      ++++.  .|+ ...+..++.++...|++++|++.|+++++.. +.+...|..++..|...|++++|+..|+++++  +.|
T Consensus       356 kal~l--~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~--l~P  430 (615)
T TIGR00990       356 KSIEL--DPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSID--LDP  430 (615)
T ss_pred             HHHHc--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCc
Confidence            99884  444 5577888888999999999999999888753 34578888899999999999999999999988  778


Q ss_pred             Ch-hHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCcccCH-----HH
Q 000951          875 KC-TQYITLINGMCRVGNFQGAFKLKDEMEALGISSSDVAESAMVRGLAHCGKVEEAMLVLNRMLRMRLVPTI-----AT  948 (1211)
Q Consensus       875 ~~-~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~p~~-----~~  948 (1211)
                      +. ..+..++.++.+.|++++|+..|+++++. .+.+..++..++.++...|++++|++.|+++++..+..+.     ..
T Consensus       431 ~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~-~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~  509 (615)
T TIGR00990       431 DFIFSHIQLGVTQYKEGSIASSMATFRRCKKN-FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLP  509 (615)
T ss_pred             cCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHH
Confidence            64 67888889999999999999999998865 3666788888899999999999999999999987654211     11


Q ss_pred             HHHHH-HHhhhhCCHHHHHHHHHHHHhcCCCCchH-HHHHHHHHHHhCCChhHHHHHHHHHHH
Q 000951          949 FTTLI-HKFCKEAKFVDALKLKGTMELSGVKLDVV-SYNVLISGLCANGDVMPAFELYEEMKH 1009 (1211)
Q Consensus       949 ~~~L~-~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~ 1009 (1211)
                      +...+ ..+...|++++|+.+++.....  .|+.. .+..++.+|...|++++|++.+++..+
T Consensus       510 l~~~a~~~~~~~~~~~eA~~~~~kAl~l--~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~  570 (615)
T TIGR00990       510 LINKALALFQWKQDFIEAENLCEKALII--DPECDIAVATMAQLLLQQGDVDEALKLFERAAE  570 (615)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence            22222 2334468999999988766554  67655 678888899999999999999988765

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=99.88  E-value=4.6e-19  Score=214.96  Aligned_cols=322  Identities=12%  Similarity=0.063  Sum_probs=147.0

Q ss_pred             HHhCCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHH
Q 000951          640 LCRKGKVVSALLFFEKVVSKRTFSPNNVMFTCLVDGLFKAGQSKAAMHISKIMDKEGVYPDTIAFNAVMDGFSRMGNMMM  719 (1211)
Q Consensus       640 ~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~  719 (1211)
                      +.+.|++++|..+++..+...  +-+...+..++.+....|++++|...++.+.... +.+...+..+...+.+.|++++
T Consensus        52 ~~~~g~~~~A~~l~~~~l~~~--p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~-P~~~~a~~~la~~l~~~g~~~~  128 (656)
T PRK15174         52 CLRKDETDVGLTLLSDRVLTA--KNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVN-VCQPEDVLLVASVLLKSKQYAT  128 (656)
T ss_pred             HHhcCCcchhHHHhHHHHHhC--CCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHH
Confidence            334444444444444444432  1112223333333334444444444444443331 1223334444444444455555


Q ss_pred             HHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 000951          720 ANDLLSTMRSRKLCP-SLATYNILLHGYSKKKDLLMCSMLLNTMKMEGLLPDKLTCHSLILGFCETGMLEVGFKFLKKMI  798 (1211)
Q Consensus       720 A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~  798 (1211)
                      |...++++.+.  .| +...+..++.++...|++++|...++++...  .|+.......+..+...|++++|+..++.++
T Consensus       129 Ai~~l~~Al~l--~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~--~P~~~~a~~~~~~l~~~g~~~eA~~~~~~~l  204 (656)
T PRK15174        129 VADLAEQAWLA--FSGNSQIFALHLRTLVLMDKELQAISLARTQAQE--VPPRGDMIATCLSFLNKSRLPEDHDLARALL  204 (656)
T ss_pred             HHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            55555444432  23 3444444555555555555555555544432  2222111111122444555555555555544


Q ss_pred             HcCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhcchhh----HHHHHHHHHHcCCCC
Q 000951          799 AEGTMVDCFTFNVLMRKCCEAGEMGKAFDLFNIMNMLGVVPDTNTQDAIIMGLKRIAAFQE----SHFVLRGMAEKGLTP  874 (1211)
Q Consensus       799 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~e----A~~~~~~~~~~g~~p  874 (1211)
                      +....++......++.++...|++++|++.|+++.+.. +.+...+..++..|...|++++    |+..|+++++  ..|
T Consensus       205 ~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~--l~P  281 (656)
T PRK15174        205 PFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQ--FNS  281 (656)
T ss_pred             hcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHh--hCC
Confidence            43222222223333444555555555555555555432 2234444555555555555553    4555555555  445


Q ss_pred             Ch-hHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCcccCHHHHHHHH
Q 000951          875 KC-TQYITLINGMCRVGNFQGAFKLKDEMEALGISSSDVAESAMVRGLAHCGKVEEAMLVLNRMLRMRLVPTIATFTTLI  953 (1211)
Q Consensus       875 ~~-~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~p~~~~~~~L~  953 (1211)
                      +. ..+..++.++...|++++|...++++++.. +.+..++..++.++.+.|++++|+..|+++++.+|. +...+..++
T Consensus       282 ~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~-P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~-~~~~~~~~a  359 (656)
T PRK15174        282 DNVRIVTLYADALIRTGQNEKAIPLLQQSLATH-PDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGV-TSKWNRYAA  359 (656)
T ss_pred             CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-chHHHHHHH
Confidence            42 455555555555555555555555555442 333444555555555555555555555555554433 333333345


Q ss_pred             HHhhhhCCHHHHHHHHHHHH
Q 000951          954 HKFCKEAKFVDALKLKGTME  973 (1211)
Q Consensus       954 ~~~~~~g~~~~A~~~~~~~~  973 (1211)
                      .++...|++++|+..|+...
T Consensus       360 ~al~~~G~~deA~~~l~~al  379 (656)
T PRK15174        360 AALLQAGKTSEAESVFEHYI  379 (656)
T ss_pred             HHHHHCCCHHHHHHHHHHHH
Confidence            55555555555555555443

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=99.87  E-value=8.3e-19  Score=212.77  Aligned_cols=356  Identities=8%  Similarity=-0.031  Sum_probs=285.0

Q ss_pred             hCCChHHHHHHHHHHHHcCCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHH
Q 000951          642 RKGKVVSALLFFEKVVSKRTFS-PNNVMFTCLVDGLFKAGQSKAAMHISKIMDKEGVYPDTIAFNAVMDGFSRMGNMMMA  720 (1211)
Q Consensus       642 ~~g~~~~A~~~~~~~~~~~~~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A  720 (1211)
                      ++.+++.-.-+|....++-.-. .+......++..+.+.|++++|..+++..+... +.+...+..++.++...|++++|
T Consensus        17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~-p~~~~~l~~l~~~~l~~g~~~~A   95 (656)
T PRK15174         17 KQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTA-KNGRDLLRRWVISPLASSQPDAV   95 (656)
T ss_pred             hhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhC-CCchhHHHHHhhhHhhcCCHHHH
Confidence            4455555444454443321011 122334456677889999999999999998763 22344555566677789999999


Q ss_pred             HHHHHHHHHCCCCC-CHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 000951          721 NDLLSTMRSRKLCP-SLATYNILLHGYSKKKDLLMCSMLLNTMKMEGLLPD-KLTCHSLILGFCETGMLEVGFKFLKKMI  798 (1211)
Q Consensus       721 ~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~  798 (1211)
                      ...|+++.+.  .| +...|..++..+...|++++|+..|+++++  +.|+ ...+..++.++...|++++|...++.+.
T Consensus        96 ~~~l~~~l~~--~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~--l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~  171 (656)
T PRK15174         96 LQVVNKLLAV--NVCQPEDVLLVASVLLKSKQYATVADLAEQAWL--AFSGNSQIFALHLRTLVLMDKELQAISLARTQA  171 (656)
T ss_pred             HHHHHHHHHh--CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHH
Confidence            9999999964  56 688899999999999999999999999998  5675 4567778899999999999999999987


Q ss_pred             HcCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhcchhhHHHHHHHHHHcCCCCC-hh
Q 000951          799 AEGTMVDCFTFNVLMRKCCEAGEMGKAFDLFNIMNMLGVVPDTNTQDAIIMGLKRIAAFQESHFVLRGMAEKGLTPK-CT  877 (1211)
Q Consensus       799 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~g~~p~-~~  877 (1211)
                      ..... +...+..+ ..+...|++++|++.++.+++....++...+..++.++...|++++|+..|+++++  ..|+ ..
T Consensus       172 ~~~P~-~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~--~~p~~~~  247 (656)
T PRK15174        172 QEVPP-RGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALA--RGLDGAA  247 (656)
T ss_pred             HhCCC-CHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCCHH
Confidence            75322 23334333 35788999999999999988754334455556667889999999999999999998  6786 47


Q ss_pred             HHHHHHHHHHhcCChhh----HHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCcccCHHHHHHHH
Q 000951          878 QYITLINGMCRVGNFQG----AFKLKDEMEALGISSSDVAESAMVRGLAHCGKVEEAMLVLNRMLRMRLVPTIATFTTLI  953 (1211)
Q Consensus       878 ~~~~l~~~~~~~g~~~e----A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~p~~~~~~~L~  953 (1211)
                      .+..++.++...|++++    |...|+++++.. |.+..++..++.++...|++++|+..++++++..|. ++.++..++
T Consensus       248 ~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~-~~~a~~~La  325 (656)
T PRK15174        248 LRRSLGLAYYQSGRSREAKLQAAEHWRHALQFN-SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPD-LPYVRAMYA  325 (656)
T ss_pred             HHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHH
Confidence            88899999999999996    899999999873 667789999999999999999999999999998866 788999999


Q ss_pred             HHhhhhCCHHHHHHHHHHHHhcCCCCchHH-HHHHHHHHHhCCChhHHHHHHHHHHHc
Q 000951          954 HKFCKEAKFVDALKLKGTMELSGVKLDVVS-YNVLISGLCANGDVMPAFELYEEMKHK 1010 (1211)
Q Consensus       954 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~-~~~l~~~~~~~g~~~~a~~~~~~~~~~ 1010 (1211)
                      .++...|++++|+..|+.+...  .|+... +..++.++...|++++|...++...+.
T Consensus       326 ~~l~~~G~~~eA~~~l~~al~~--~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~  381 (656)
T PRK15174        326 RALRQVGQYTAASDEFVQLARE--KGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQA  381 (656)
T ss_pred             HHHHHCCCHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence            9999999999999999877765  787654 445677899999999999999998763

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=99.87  E-value=2.5e-19  Score=208.20  Aligned_cols=299  Identities=13%  Similarity=0.086  Sum_probs=236.4

Q ss_pred             HHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcC
Q 000951          710 GFSRMGNMMMANDLLSTMRSRKLCP-SLATYNILLHGYSKKKDLLMCSMLLNTMKMEGLLPD---KLTCHSLILGFCETG  785 (1211)
Q Consensus       710 ~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~---~~~~~~l~~~~~~~g  785 (1211)
                      .+...|++++|...|+++.+.  .| +..++..++..+...|++++|+.+++.++..+..++   ...+..++..|...|
T Consensus        44 ~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g  121 (389)
T PRK11788         44 NFLLNEQPDKAIDLFIEMLKV--DPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAG  121 (389)
T ss_pred             HHHhcCChHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCC
Confidence            355678888888888888754  44 566788888888888888888888888876432221   235667778888888


Q ss_pred             ChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHHHHHCCCCCC----hhhHHHHHHHHHhhcchhhHH
Q 000951          786 MLEVGFKFLKKMIAEGTMVDCFTFNVLMRKCCEAGEMGKAFDLFNIMNMLGVVPD----TNTQDAIIMGLKRIAAFQESH  861 (1211)
Q Consensus       786 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~eA~  861 (1211)
                      ++++|+.+++++.+. .+.+..++..++.+|.+.|++++|++.++.+.+.+..+.    ...+..++..+.+.|++++|+
T Consensus       122 ~~~~A~~~~~~~l~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~  200 (389)
T PRK11788        122 LLDRAEELFLQLVDE-GDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAAR  200 (389)
T ss_pred             CHHHHHHHHHHHHcC-CcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHH
Confidence            999999998888874 234566788888888999999999999988877543322    124567788888999999999


Q ss_pred             HHHHHHHHcCCCCC-hhHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 000951          862 FVLRGMAEKGLTPK-CTQYITLINGMCRVGNFQGAFKLKDEMEALGISSSDVAESAMVRGLAHCGKVEEAMLVLNRMLRM  940 (1211)
Q Consensus       862 ~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~  940 (1211)
                      ..|+++++  ..|+ ..++..++..+.+.|++++|.+.|+++.+.+......++..++.+|...|++++|...++++++.
T Consensus       201 ~~~~~al~--~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~  278 (389)
T PRK11788        201 ALLKKALA--ADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE  278 (389)
T ss_pred             HHHHHHHh--HCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            99999988  5675 46788899999999999999999999987643333556788999999999999999999999987


Q ss_pred             CcccCHHHHHHHHHHhhhhCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHh---CCChhHHHHHHHHHHHcCCccChh
Q 000951          941 RLVPTIATFTTLIHKFCKEAKFVDALKLKGTMELSGVKLDVVSYNVLISGLCA---NGDVMPAFELYEEMKHKGLCPNST 1017 (1211)
Q Consensus       941 ~~~p~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~g~~p~~~ 1017 (1211)
                      .|  +...+..++..+.+.|++++|..+++.+...  .|+...+..+...+..   .|+.+++..++++|.++++.|+|.
T Consensus       279 ~p--~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~  354 (389)
T PRK11788        279 YP--GADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR  354 (389)
T ss_pred             CC--CchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence            64  4455688999999999999999999877665  7988888777765443   569999999999999988888885

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=99.86  E-value=1.2e-17  Score=207.60  Aligned_cols=421  Identities=10%  Similarity=-0.018  Sum_probs=220.7

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHH
Q 000951          527 TFDCMIDGYGTLGDGLKAFSMFDEMVKLGHHPSIFTYGSLLKGLCKGGNLKEAKRFLNSLHHIPSAVDTVAYNTILAETC  606 (1211)
Q Consensus       527 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~  606 (1211)
                      ...-.+......|+.++|++++.+..... +.+...+..+...+...|++++|.++++.+++..|. +...+..++..+.
T Consensus        17 ~~~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~la~~l~   94 (765)
T PRK10049         17 QIADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQ-NDDYQRGLILTLA   94 (765)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHH
Confidence            33344444555666666666666665421 233444555556666666666666666666555433 3444555555666


Q ss_pred             HcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 000951          607 KSGNLWEAIVLLDEMVQFNLLPDRYTYTILLAGLCRKGKVVSALLFFEKVVSKRTFSPNNVMFTCLVDGLFKAGQSKAAM  686 (1211)
Q Consensus       607 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~  686 (1211)
                      ..|++++|+..++++.+.. +.+.. +..+...+...|+.++|+..++++++..  +.+...+..+..++...+..+.|+
T Consensus        95 ~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~--P~~~~~~~~la~~l~~~~~~e~Al  170 (765)
T PRK10049         95 DAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRA--PQTQQYPTEYVQALRNNRLSAPAL  170 (765)
T ss_pred             HCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCChHHHH
Confidence            6666666666666665542 22333 5555555556666666666666666532  222334444555555555555565


Q ss_pred             HHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-----HccCCh---HHHHHH
Q 000951          687 HISKIMDKEGVYPDTIAFNAVMDGFSRMGNMMMANDLLSTMRSRKLCPSLATYNILLHGY-----SKKKDL---LMCSML  758 (1211)
Q Consensus       687 ~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~-----~~~g~~---~~A~~~  758 (1211)
                      +.++.+..   .|+..  ..+        .                   ......++..+     ...+++   ++|++.
T Consensus       171 ~~l~~~~~---~p~~~--~~l--------~-------------------~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~  218 (765)
T PRK10049        171 GAIDDANL---TPAEK--RDL--------E-------------------ADAAAELVRLSFMPTRSEKERYAIADRALAQ  218 (765)
T ss_pred             HHHHhCCC---CHHHH--HHH--------H-------------------HHHHHHHHHhhcccccChhHHHHHHHHHHHH
Confidence            55544432   12100  000        0                   00000011111     111122   455555


Q ss_pred             HHHHHHC-CCCCCHH-HH----HHHHHHHHhcCChHHHHHHHHHHHHcCCC-CCHhhHHHHHHHHHhcCcHHHHHHHHHH
Q 000951          759 LNTMKME-GLLPDKL-TC----HSLILGFCETGMLEVGFKFLKKMIAEGTM-VDCFTFNVLMRKCCEAGEMGKAFDLFNI  831 (1211)
Q Consensus       759 ~~~~~~~-g~~p~~~-~~----~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~  831 (1211)
                      ++.+++. ...|+.. .+    ...+.++...|++++|+..|+++++.+.+ |+. ....++..|...|++++|++.|++
T Consensus       219 ~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~  297 (765)
T PRK10049        219 YDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTE  297 (765)
T ss_pred             HHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHH
Confidence            5555532 1122111 11    01122334556666666666666654321 221 112235566666666666666666


Q ss_pred             HHHCCCCC---ChhhHHHHHHHHHhhcchhhHHHHHHHHHHcC-----------CCCCh---hHHHHHHHHHHhcCChhh
Q 000951          832 MNMLGVVP---DTNTQDAIIMGLKRIAAFQESHFVLRGMAEKG-----------LTPKC---TQYITLINGMCRVGNFQG  894 (1211)
Q Consensus       832 ~~~~~~~~---~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~g-----------~~p~~---~~~~~l~~~~~~~g~~~e  894 (1211)
                      +.+.....   ....+..++.++...|++++|+.+++++.+..           ..|+.   ..+..++.++...|++++
T Consensus       298 ~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~e  377 (765)
T PRK10049        298 LFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQ  377 (765)
T ss_pred             HhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHH
Confidence            55422111   02334445555566666666666666666511           11221   244556667777777777


Q ss_pred             HHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCcccCHHHHHHHHHHhhhhCCHHHHHHHHHHHHh
Q 000951          895 AFKLKDEMEALGISSSDVAESAMVRGLAHCGKVEEAMLVLNRMLRMRLVPTIATFTTLIHKFCKEAKFVDALKLKGTMEL  974 (1211)
Q Consensus       895 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~p~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~  974 (1211)
                      |++.++++... .|.+...+..++.++...|++++|++.++++++..|. +...+..++..+...|++++|+.+++.+.+
T Consensus       378 A~~~l~~al~~-~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd-~~~l~~~~a~~al~~~~~~~A~~~~~~ll~  455 (765)
T PRK10049        378 AEMRARELAYN-APGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPR-NINLEVEQAWTALDLQEWRQMDVLTDDVVA  455 (765)
T ss_pred             HHHHHHHHHHh-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC-ChHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence            77777777655 3555667777777777777777777777777776654 666777777777777777777777776665


Q ss_pred             cCCCCchHHHHHHHHH
Q 000951          975 SGVKLDVVSYNVLISG  990 (1211)
Q Consensus       975 ~~~~p~~~~~~~l~~~  990 (1211)
                      .  .|+......+...
T Consensus       456 ~--~Pd~~~~~~~~~~  469 (765)
T PRK10049        456 R--EPQDPGVQRLARA  469 (765)
T ss_pred             h--CCCCHHHHHHHHH
Confidence            5  6766544444433

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=99.86  E-value=1.5e-17  Score=206.67  Aligned_cols=414  Identities=10%  Similarity=0.003  Sum_probs=304.3

Q ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCCHHHHHHHH
Q 000951          594 DTVAYNTILAETCKSGNLWEAIVLLDEMVQFNLLPDRYTYTILLAGLCRKGKVVSALLFFEKVVSKRTFSPNNVMFTCLV  673 (1211)
Q Consensus       594 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~  673 (1211)
                      ++....-.+......|+.++|++++.+..... +.+...+..+...+...|++++|..+|+++++..  +.+...+..++
T Consensus        14 ~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~la   90 (765)
T PRK10049         14 SNNQIADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE--PQNDDYQRGLI   90 (765)
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHH
Confidence            45555666777778888888888888887532 3455567888888888888888888888888753  34456677777


Q ss_pred             HHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCCh
Q 000951          674 DGLFKAGQSKAAMHISKIMDKEGVYPDTIAFNAVMDGFSRMGNMMMANDLLSTMRSRKLCP-SLATYNILLHGYSKKKDL  752 (1211)
Q Consensus       674 ~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~  752 (1211)
                      ..+...|++++|+..++++++.. +.+.. +..+..++...|+.++|...++++.+.  .| +...+..++.++...|..
T Consensus        91 ~~l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~--~P~~~~~~~~la~~l~~~~~~  166 (765)
T PRK10049         91 LTLADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPR--APQTQQYPTEYVQALRNNRLS  166 (765)
T ss_pred             HHHHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCh
Confidence            88888888888888888887662 33455 777788888888888888888888864  55 566677788888888888


Q ss_pred             HHHHHHHHHHHHCCCCCCHH------HHHHHHHHH-----HhcCCh---HHHHHHHHHHHHc-CCCCCHh-h-H---HHH
Q 000951          753 LMCSMLLNTMKMEGLLPDKL------TCHSLILGF-----CETGML---EVGFKFLKKMIAE-GTMVDCF-T-F---NVL  812 (1211)
Q Consensus       753 ~~A~~~~~~~~~~g~~p~~~------~~~~l~~~~-----~~~g~~---~~A~~~~~~~~~~-~~~~~~~-~-~---~~l  812 (1211)
                      ++|+..++.+..   .|+..      ....++...     ...+++   ++|++.++.+++. ...|+.. . .   ...
T Consensus       167 e~Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~  243 (765)
T PRK10049        167 APALGAIDDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDR  243 (765)
T ss_pred             HHHHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHH
Confidence            888888876653   23320      111122222     122334   7889999998864 1222211 1 1   111


Q ss_pred             HHHHHhcCcHHHHHHHHHHHHHCCCC-CChhhHHHHHHHHHhhcchhhHHHHHHHHHHcCCCCCh-----hHHHHHHHHH
Q 000951          813 MRKCCEAGEMGKAFDLFNIMNMLGVV-PDTNTQDAIIMGLKRIAAFQESHFVLRGMAEKGLTPKC-----TQYITLINGM  886 (1211)
Q Consensus       813 ~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~g~~p~~-----~~~~~l~~~~  886 (1211)
                      +.++...|++++|++.|+++.+.+.+ |+ .....++.+|...|++++|+..|+++++  ..|..     .....+..++
T Consensus       244 l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~-~a~~~la~~yl~~g~~e~A~~~l~~~l~--~~p~~~~~~~~~~~~L~~a~  320 (765)
T PRK10049        244 LGALLARDRYKDVISEYQRLKAEGQIIPP-WAQRWVASAYLKLHQPEKAQSILTELFY--HPETIADLSDEELADLFYSL  320 (765)
T ss_pred             HHHHHHhhhHHHHHHHHHHhhccCCCCCH-HHHHHHHHHHHhcCCcHHHHHHHHHHhh--cCCCCCCCChHHHHHHHHHH
Confidence            23456779999999999999876532 22 2223368899999999999999999987  44432     4566777788


Q ss_pred             HhcCChhhHHHHHHHHHHcCC-----------CCc---hHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCcccCHHHHHHH
Q 000951          887 CRVGNFQGAFKLKDEMEALGI-----------SSS---DVAESAMVRGLAHCGKVEEAMLVLNRMLRMRLVPTIATFTTL  952 (1211)
Q Consensus       887 ~~~g~~~eA~~~~~~~~~~~~-----------~~~---~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~p~~~~~~~L  952 (1211)
                      ...|++++|...++++.+...           .|+   ..++..++.++...|++++|++.++++++..|. +...+..+
T Consensus       321 ~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~-n~~l~~~l  399 (765)
T PRK10049        321 LESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPG-NQGLRIDY  399 (765)
T ss_pred             HhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHH
Confidence            999999999999999986521           122   235567888999999999999999999998766 89999999


Q ss_pred             HHHhhhhCCHHHHHHHHHHHHhcCCCCchH-HHHHHHHHHHhCCChhHHHHHHHHHHHcCCccChhhHHHHHHH
Q 000951          953 IHKFCKEAKFVDALKLKGTMELSGVKLDVV-SYNVLISGLCANGDVMPAFELYEEMKHKGLCPNSTTYSVLIDA 1025 (1211)
Q Consensus       953 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~ 1025 (1211)
                      +.++...|++++|++.++.....  .|+.. .+..++.++...|+|++|..+++.+++  ..|+......+...
T Consensus       400 A~l~~~~g~~~~A~~~l~~al~l--~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~--~~Pd~~~~~~~~~~  469 (765)
T PRK10049        400 ASVLQARGWPRAAENELKKAEVL--EPRNINLEVEQAWTALDLQEWRQMDVLTDDVVA--REPQDPGVQRLARA  469 (765)
T ss_pred             HHHHHhcCCHHHHHHHHHHHHhh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHH--hCCCCHHHHHHHHH
Confidence            99999999999999999877665  89765 667888899999999999999999977  45665544444444

>PF14432 DYW_deaminase: DYW family of nucleic acid deaminases

Probab=99.86  E-value=2.4e-23  Score=186.52  Aligned_cols=101  Identities=16%  Similarity=0.244  Sum_probs=73.4

Q ss_pred             cccCCCCcccchhhhHHHHHHHHHHhhhhccCCCCCChhHH-hhCchhHHHHHHHHHHHHHHHhhhccCCCCccccCCCc
Q 000951         1049 ISWNWDGSTQHLHEGLINALRKLKSFKKNRRNNAKIDPTFM-EALPEDLLAEVLASQQASSIAQGLAHHGEGQPVDMDNA 1127 (1211)
Q Consensus      1049 ~~~~~~~~~~~~~~~~i~~l~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~h~e~~a~~~~~~ 1127 (1211)
                      ++.|.++|.+||+...+      .+++..+|.   ++...+ +++.++....+    +++.+...+++|||||||||||+
T Consensus         8 ~h~F~sgd~shp~~~~~------~~~~~~~~~---~~~~~~~~~~~~e~~~~~----d~~~~~~~~~~HSEKlAiafgli   74 (116)
T PF14432_consen    8 VHSFVSGDRSHPQSELI------NKMKEEGYV---PDTKEVGHDVDEEEKHDY----DEEEKEESLCYHSEKLAIAFGLI   74 (116)
T ss_pred             eEEEEeCCCcCccHHHH------HHHHHcCCc---chhhhhCCCchhhhhhhc----ccccchhhhhccHHHHHHHhccc
Confidence            46788899999998444      333445553   222222 11211111111    13345568999999999999999


Q ss_pred             ceeeccchhhhhhh-hcCcchhhhhHHHHhhccccceeecCccc
Q 000951         1128 SVIATFPADLCEEK-LFCPCCLLHYLLKLIYQGSKQRVIIGPAV 1170 (1211)
Q Consensus      1128 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1170 (1211)
                      +|      ||+||+ |||+||  |+++|+||+++||+|||||+.
T Consensus        75 ~~------~vvkn~~RvC~DC--H~~~K~iS~~~~ReIiVRD~~  110 (116)
T PF14432_consen   75 NT------RVVKNLKRVCGDC--HSFIKFISKITGREIIVRDSN  110 (116)
T ss_pred             ce------eEEecCCccchHH--HHHHHHHHHHHCeEEEEeCCC
Confidence            99      999999 999999  999999999999999999984

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=99.85  E-value=1.1e-18  Score=202.81  Aligned_cols=258  Identities=14%  Similarity=0.064  Sum_probs=118.9

Q ss_pred             HHhCCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHhcCC
Q 000951          640 LCRKGKVVSALLFFEKVVSKRTFSPNNVMFTCLVDGLFKAGQSKAAMHISKIMDKEGVYPD---TIAFNAVMDGFSRMGN  716 (1211)
Q Consensus       640 ~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~---~~~~~~li~~~~~~g~  716 (1211)
                      +...|++++|+..|.++++.+  +.+..++..+...+...|++++|..+++.+...+..++   ...+..++..|.+.|+
T Consensus        45 ~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~  122 (389)
T PRK11788         45 FLLNEQPDKAIDLFIEMLKVD--PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGL  122 (389)
T ss_pred             HHhcCChHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCC
Confidence            344556666666666665532  22334555555556666666666666655554321111   1234455555555566


Q ss_pred             hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCChHHHHH
Q 000951          717 MMMANDLLSTMRSRKLCPSLATYNILLHGYSKKKDLLMCSMLLNTMKMEGLLPDK----LTCHSLILGFCETGMLEVGFK  792 (1211)
Q Consensus       717 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~----~~~~~l~~~~~~~g~~~~A~~  792 (1211)
                      +++|..+|+++.+. .+++..+++.++.++.+.|++++|++.++.+.+.+..+..    ..+..++..+.+.|++++|+.
T Consensus       123 ~~~A~~~~~~~l~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~  201 (389)
T PRK11788        123 LDRAEELFLQLVDE-GDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARA  201 (389)
T ss_pred             HHHHHHHHHHHHcC-CcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHH
Confidence            66666655555532 1124455555555555555555555555555543221111    122233444445555555555


Q ss_pred             HHHHHHHcCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhcchhhHHHHHHHHHHcCC
Q 000951          793 FLKKMIAEGTMVDCFTFNVLMRKCCEAGEMGKAFDLFNIMNMLGVVPDTNTQDAIIMGLKRIAAFQESHFVLRGMAEKGL  872 (1211)
Q Consensus       793 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~g~  872 (1211)
                      +++++++.. +.+...+..++..|.+.|++++|++.|+++.+.+......++..++.+|...|++++|...++++++  .
T Consensus       202 ~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~--~  278 (389)
T PRK11788        202 LLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALE--E  278 (389)
T ss_pred             HHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--h
Confidence            555554421 1123344444444555555555555555444322111122334444444444444444444444444  2


Q ss_pred             CCChhHHHHHHHHHHhcCChhhHHHHHHHHH
Q 000951          873 TPKCTQYITLINGMCRVGNFQGAFKLKDEME  903 (1211)
Q Consensus       873 ~p~~~~~~~l~~~~~~~g~~~eA~~~~~~~~  903 (1211)
                      .|+...+..++..+.+.|++++|...++++.
T Consensus       279 ~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l  309 (389)
T PRK11788        279 YPGADLLLALAQLLEEQEGPEAAQALLREQL  309 (389)
T ss_pred             CCCchHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence            3333333334444444444444444444443

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=99.85  E-value=1.1e-14  Score=165.98  Aligned_cols=396  Identities=14%  Similarity=0.055  Sum_probs=221.6

Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChHHHHHHHHHH
Q 000951          246 CTYNMFIDDLCRNNRSAKGYLLLKNMRKRMITPNEVTYNTLINGFVKEGKIQVASRVFDEMSMLNFSPNSITYNELIDGH  325 (1211)
Q Consensus       246 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~  325 (1211)
                      ...-...+.+...|++++|..++.+.++..+. +...|.+|...|-..|+.+++...+-...-.. +.|..-|..+....
T Consensus       140 ~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~-~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls  217 (895)
T KOG2076|consen  140 RQLLGEANNLFARGDLEEAEEILMEVIKQDPR-NPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLS  217 (895)
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcc-chhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHH
Confidence            33333344445557777777777777766543 56677777777777777777776665544433 34556677777777


Q ss_pred             HhcCCHHHHHHHHHHHHHCCCCcCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHH----HHHHHHHcCCH
Q 000951          326 CCKGNFKEAFRLLAMMEEMGLRPNEVSYGALLNGFCKHAKFDLARSLLERMRTNGISISCIAYTS----VIDGLCKCGLL  401 (1211)
Q Consensus       326 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~l~~~~~~~~~~~~~~~~~~----li~~~~~~g~~  401 (1211)
                      .+.|++++|.-.|.+..+.. +++...+---...|-+.|+...|...|.++.....+.|..-.-.    .++.+...++-
T Consensus       218 ~~~~~i~qA~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~  296 (895)
T KOG2076|consen  218 EQLGNINQARYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNER  296 (895)
T ss_pred             HhcccHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHH
Confidence            77777777777777777653 33333333445556677777777777777777654333322222    34455566666


Q ss_pred             HHHHHHHHHHHhCC-CCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 000951          402 DEAMQLFNKMFKDG-LNPDLITFSVLINGFCKVGMTRKAKAVLCKMYRDGLVPNKIIYSTLIYYFCKMGKVTEAMKVYAV  480 (1211)
Q Consensus       402 ~~A~~~~~~m~~~g-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~  480 (1211)
                      +.|.+.++.....+ -..+...++.++..|.+...++.|.....++......+|..-+-+-=     .++     .-+..
T Consensus       297 e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~-----~~~-----~~~~~  366 (895)
T KOG2076|consen  297 ERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDE-----RRR-----EEPNA  366 (895)
T ss_pred             HHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhh-----hcc-----ccccc
Confidence            77777777666521 12234556677777777777777777776666533333332221000     000     00000


Q ss_pred             H--HHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhcC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 000951          481 M--NRNAQGSDHFTCNMLVASLCKGGKVCEAEDYVGHMKRIG--VVPNSITFDCMIDGYGTLGDGLKAFSMFDEMVKLGH  556 (1211)
Q Consensus       481 ~--~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g--~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~  556 (1211)
                      .  ...+..++..+. -+.-++......+....+...+....  +.-++..|.-+..+|...|++.+|+.+|..+.....
T Consensus       367 ~~~~~~~~s~~l~v~-rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~  445 (895)
T KOG2076|consen  367 LCEVGKELSYDLRVI-RLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREG  445 (895)
T ss_pred             cccCCCCCCccchhH-hHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCcc
Confidence            0  001112222221 11222233333333333333333333  222334666677777777777777777777766544


Q ss_pred             CCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--------CCCC
Q 000951          557 HPSIFTYGSLLKGLCKGGNLKEAKRFLNSLHHIPSAVDTVAYNTILAETCKSGNLWEAIVLLDEMVQF--------NLLP  628 (1211)
Q Consensus       557 ~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--------~~~p  628 (1211)
                      .-+...|-.+..+|...|.+++|.+.|+.++...|. +..+.-.|...+.+.|+.++|.+.+..+...        +..|
T Consensus       446 ~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~-~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~  524 (895)
T KOG2076|consen  446 YQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPD-NLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEP  524 (895)
T ss_pred             ccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-chhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccH
Confidence            445666777777777777777777777777666554 4555566666777777777777777764421        1233


Q ss_pred             CHHHHHHHHHHHHhCCChHHHHHHHHHH
Q 000951          629 DRYTYTILLAGLCRKGKVVSALLFFEKV  656 (1211)
Q Consensus       629 ~~~~~~~li~~~~~~g~~~~A~~~~~~~  656 (1211)
                      +..........+.+.|+.++=+..-..+
T Consensus       525 e~ri~~~r~d~l~~~gk~E~fi~t~~~L  552 (895)
T KOG2076|consen  525 ERRILAHRCDILFQVGKREEFINTASTL  552 (895)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence            3344444455566667666644433333

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=99.85  E-value=1.1e-14  Score=165.87  Aligned_cols=660  Identities=12%  Similarity=0.045  Sum_probs=346.0

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHCCCCcCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCC
Q 000951          321 LIDGHCCKGNFKEAFRLLAMMEEMGLRPNEVSYGALLNGFCKHAKFDLARSLLERMRTNGISISCIAYTSVIDGLCKCGL  400 (1211)
Q Consensus       321 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~  400 (1211)
                      ....+.-.|++++|.+++.+..+.. +-+...|.+|...|-..|+.+.+...+-.+...+ +.|...|..+.+...+.|.
T Consensus       145 eAN~lfarg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~~~~~  222 (895)
T KOG2076|consen  145 EANNLFARGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSEQLGN  222 (895)
T ss_pred             HHHHHHHhCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHhccc
Confidence            3333444588888888888887764 4466678888888888888888887765555544 5566778888888888888


Q ss_pred             HHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHHcCCHHHHHH
Q 000951          401 LDEAMQLFNKMFKDGLNPDLITFSVLINGFCKVGMTRKAKAVLCKMYRDGLVPNK----IIYSTLIYYFCKMGKVTEAMK  476 (1211)
Q Consensus       401 ~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~~~~~li~~~~~~g~~~~A~~  476 (1211)
                      +++|.-+|.+.++.. +++....---+..|-+.|+...|.+.|.++.+..-+.|.    .....++..+...++.+.|.+
T Consensus       223 i~qA~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~  301 (895)
T KOG2076|consen  223 INQARYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAK  301 (895)
T ss_pred             HHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence            888888888888763 234333344456677788888888888888776321121    223334555666676677777


Q ss_pred             HHHHHHHc-CCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhcCCCCCHHHHHHH------HHHHHhcCCHHHHHHHHH
Q 000951          477 VYAVMNRN-AQGSDHFTCNMLVASLCKGGKVCEAEDYVGHMKRIGVVPNSITFDCM------IDGYGTLGDGLKAFSMFD  549 (1211)
Q Consensus       477 ~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l------i~~~~~~g~~~~A~~~~~  549 (1211)
                      .++..... +-..+...++.++..|.+...++.|......+......+|..-|.+-      -..++..           
T Consensus       302 ~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~-----------  370 (895)
T KOG2076|consen  302 ALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEV-----------  370 (895)
T ss_pred             HHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccC-----------
Confidence            77766652 22234456677777777777777777776666553333333322110      0000000           


Q ss_pred             HHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCC--CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC
Q 000951          550 EMVKLGHHPSIFTYGSLLKGLCKGGNLKEAKRFLNSLHHIP--SAVDTVAYNTILAETCKSGNLWEAIVLLDEMVQFNLL  627 (1211)
Q Consensus       550 ~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~  627 (1211)
                         ..+..++..+ ..+.-++......+....+...+....  +..+...|.-+..+|...|++.+|+.+|..+.....-
T Consensus       371 ---~~~~s~~l~v-~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~  446 (895)
T KOG2076|consen  371 ---GKELSYDLRV-IRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGY  446 (895)
T ss_pred             ---CCCCCccchh-HhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccc
Confidence               0112222222 111122222222222222333333322  3334556666666666667777777666666664433


Q ss_pred             CCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--------CCCC
Q 000951          628 PDRYTYTILLAGLCRKGKVVSALLFFEKVVSKRTFSPNNVMFTCLVDGLFKAGQSKAAMHISKIMDKE--------GVYP  699 (1211)
Q Consensus       628 p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------g~~~  699 (1211)
                      .+...|..+..+|...|.+++|.+.|++++...  +.+...-..|...+.+.|+.++|.+.+..+...        +..|
T Consensus       447 ~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~--p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~  524 (895)
T KOG2076|consen  447 QNAFVWYKLARCYMELGEYEEAIEFYEKVLILA--PDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEP  524 (895)
T ss_pred             cchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcC--CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccH
Confidence            445556666666666666777777776666632  222444555556666666777666666664311        1222


Q ss_pred             CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC-----C-----------------CCCHHHHHHHHHHHHccCChHHHHH
Q 000951          700 DTIAFNAVMDGFSRMGNMMMANDLLSTMRSRK-----L-----------------CPSLATYNILLHGYSKKKDLLMCSM  757 (1211)
Q Consensus       700 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-----~-----------------~p~~~~~~~l~~~~~~~g~~~~A~~  757 (1211)
                      +....-...+.|.+.|+.++-......|....     +                 .-.......++.+-.+.++.....+
T Consensus       525 e~ri~~~r~d~l~~~gk~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~  604 (895)
T KOG2076|consen  525 ERRILAHRCDILFQVGKREEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEK  604 (895)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhh
Confidence            33333334455566666666554444443210     0                 0011122222222233222221111


Q ss_pred             HHHH------HHHCCCCCC-H-HHHHHHHHHHHhcCChHHHHHHHHHHHHcCC-CCCH----hhHHHHHHHHHhcCcHHH
Q 000951          758 LLNT------MKMEGLLPD-K-LTCHSLILGFCETGMLEVGFKFLKKMIAEGT-MVDC----FTFNVLMRKCCEAGEMGK  824 (1211)
Q Consensus       758 ~~~~------~~~~g~~p~-~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~----~~~~~l~~~~~~~g~~~~  824 (1211)
                      -...      -...|+.-+ . ..+.-++..+++.+++.+|+.+...+..... ..+.    ..-...+.+.+..+++..
T Consensus       605 ~l~d~~~~~~~e~~~Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~  684 (895)
T KOG2076|consen  605 ALSDGTEFRAVELRGLSIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGD  684 (895)
T ss_pred             cccchhhhhhhhhccCcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHH
Confidence            1111      001111111 1 1223344566777888888887777766421 1121    122333456666777778


Q ss_pred             HHHHHHHHHHC-CC--CCC-hhhHHHHHHHHHhhcchhhHHHHHHHHHHcCCCCCh--hHHHHHHHHHHhcCChhhHHHH
Q 000951          825 AFDLFNIMNML-GV--VPD-TNTQDAIIMGLKRIAAFQESHFVLRGMAEKGLTPKC--TQYITLINGMCRVGNFQGAFKL  898 (1211)
Q Consensus       825 A~~~~~~~~~~-~~--~~~-~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~g~~p~~--~~~~~l~~~~~~~g~~~eA~~~  898 (1211)
                      |.+..+.+... +.  .|. ...|+...+...+.++----...+.....  ..|+.  ..+..-+.-....+.+.-|+..
T Consensus       685 a~~~lR~~i~~~~~~~~~~q~~l~n~~~s~~~~~~q~v~~~R~~~~~~~--~~~~~~~~l~~i~gh~~~~~~s~~~Al~~  762 (895)
T KOG2076|consen  685 AFSYLRSVITQFQFYLDVYQLNLWNLDFSYFSKYGQRVCYLRLIMRLLV--KNKDDTPPLALIYGHNLFVNASFKHALQE  762 (895)
T ss_pred             HHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--cCccCCcceeeeechhHhhccchHHHHHH
Confidence            87777777642 11  111 33444444444444443333333333333  23322  2222233444566777777777


Q ss_pred             HHHHHHcCCCCchHHHHHHHHHHHhc----------CCHHHHHHHHHHHHhCCcc-cCHHHHHHHHHHhhhhCCHHHHHH
Q 000951          899 KDEMEALGISSSDVAESAMVRGLAHC----------GKVEEAMLVLNRMLRMRLV-PTIATFTTLIHKFCKEAKFVDALK  967 (1211)
Q Consensus       899 ~~~~~~~~~~~~~~~~~~l~~~~~~~----------g~~~eA~~~~~~~~~~~~~-p~~~~~~~L~~~~~~~g~~~~A~~  967 (1211)
                      |-++... .|.++.+.-+++.++...          -..-.+..++++-.+.... ....+..++|.+|-..|-.--|..
T Consensus       763 y~ra~~~-~pd~Pl~nl~lglafih~a~qr~v~~Rh~~i~qG~afL~RY~~lR~~~~~QEa~YNigRayh~~gl~~LA~~  841 (895)
T KOG2076|consen  763 YMRAFRQ-NPDSPLINLCLGLAFIHLALQRRVSNRHAQIAQGFAFLKRYKELRRCEEKQEAFYNIGRAYHQIGLVHLAVS  841 (895)
T ss_pred             HHHHHHh-CCCCcHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHcccHHHHHH
Confidence            7766554 233344433443333211          1133445555554443221 134566677777777777777777


Q ss_pred             HHHHHHhcCCCCc------h-------HHHHHHHHHHHhCCChhHHHHHHH
Q 000951          968 LKGTMELSGVKLD------V-------VSYNVLISGLCANGDVMPAFELYE 1005 (1211)
Q Consensus       968 ~~~~~~~~~~~p~------~-------~~~~~l~~~~~~~g~~~~a~~~~~ 1005 (1211)
                      .|+...+.  .|-      .       .+-++|.-+|..+|...-|.++++
T Consensus       842 YYekvL~~--~p~~~~~~~~d~~dLrkeAA~NL~LIY~~SGn~~lArqil~  890 (895)
T KOG2076|consen  842 YYEKVLEV--SPKDVTDPKEDNYDLRKEAAYNLHLIYKKSGNMQLARQILE  890 (895)
T ss_pred             HHHHHhCC--CccccccccCCcccHHHHHHhhhhhhhccCCcHHHHHHHHH
Confidence            76654433  321      1       122556666777777766666654

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=99.83  E-value=2e-13  Score=149.06  Aligned_cols=469  Identities=9%  Similarity=-0.012  Sum_probs=318.7

Q ss_pred             HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHh----hhCCCCccHHHHHHHHHHHHHcCCH
Q 000951          536 GTLGDGLKAFSMFDEMVKLGHHPSIFTYGSLLKGLCKGGNLKEAKRFLNSL----HHIPSAVDTVAYNTILAETCKSGNL  611 (1211)
Q Consensus       536 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~----~~~~~~~~~~~~~~li~~~~~~g~~  611 (1211)
                      .+..-|+.|.+++++..+. ++.+..+|.+....=-..|+.+....++.+.    ...|...+...|..=...+-..|..
T Consensus       417 arLetYenAkkvLNkaRe~-iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv  495 (913)
T KOG0495|consen  417 ARLETYENAKKVLNKAREI-IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSV  495 (913)
T ss_pred             HHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCCh
Confidence            3444455555555555442 3444444444444444445555544444332    2234444444454444455555555


Q ss_pred             HHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 000951          612 WEAIVLLDEMVQFNLLPD--RYTYTILLAGLCRKGKVVSALLFFEKVVSKRTFSPNNVMFTCLVDGLFKAGQSKAAMHIS  689 (1211)
Q Consensus       612 ~~A~~~~~~m~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~  689 (1211)
                      -.+..+....+..|+...  ..||..-...|.+.+.++-|..+|..+++-.  +.+...|......--..|..++-..++
T Consensus       496 ~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvf--p~k~slWlra~~~ek~hgt~Esl~All  573 (913)
T KOG0495|consen  496 ITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVF--PCKKSLWLRAAMFEKSHGTRESLEALL  573 (913)
T ss_pred             hhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhc--cchhHHHHHHHHHHHhcCcHHHHHHHH
Confidence            555555555555444322  2346666666667777777777777776642  334555655555555567777777777


Q ss_pred             HHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCC
Q 000951          690 KIMDKEGVYPDTIAFNAVMDGFSRMGNMMMANDLLSTMRSRKLCP-SLATYNILLHGYSKKKDLLMCSMLLNTMKMEGLL  768 (1211)
Q Consensus       690 ~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~  768 (1211)
                      +.++.. ++.....|.....-+...|+...|+.++..+.+.  .| +...|..-+..-..+.+++.|..+|.++..  ..
T Consensus       574 qkav~~-~pkae~lwlM~ake~w~agdv~~ar~il~~af~~--~pnseeiwlaavKle~en~e~eraR~llakar~--~s  648 (913)
T KOG0495|consen  574 QKAVEQ-CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEA--NPNSEEIWLAAVKLEFENDELERARDLLAKARS--IS  648 (913)
T ss_pred             HHHHHh-CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHh--CCCcHHHHHHHHHHhhccccHHHHHHHHHHHhc--cC
Confidence            777655 2334455555556666678888888887777754  34 677777777777788888888888888776  45


Q ss_pred             CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHHHHHCCCCCChhhHHHHH
Q 000951          769 PDKLTCHSLILGFCETGMLEVGFKFLKKMIAEGTMVDCFTFNVLMRKCCEAGEMGKAFDLFNIMNMLGVVPDTNTQDAII  848 (1211)
Q Consensus       769 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~  848 (1211)
                      |+...|.--+..-..+++.++|++++++.++. ++.-...|--+++++.+.++++.|.+.|..-... ++.....|..|.
T Consensus       649 gTeRv~mKs~~~er~ld~~eeA~rllEe~lk~-fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllLa  726 (913)
T KOG0495|consen  649 GTERVWMKSANLERYLDNVEEALRLLEEALKS-FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLWLLLA  726 (913)
T ss_pred             CcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh-CCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHHHHHH
Confidence            66666665555556678888888888888874 3323557777888888888888888888776542 233456777777


Q ss_pred             HHHHhhcchhhHHHHHHHHHHcCCCCCh-hHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCH
Q 000951          849 MGLKRIAAFQESHFVLRGMAEKGLTPKC-TQYITLINGMCRVGNFQGAFKLKDEMEALGISSSDVAESAMVRGLAHCGKV  927 (1211)
Q Consensus       849 ~~~~~~g~~~eA~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~  927 (1211)
                      ..=.+.|+.-.|...+++..-  .+|+. ..|...+.+-.+.|+.++|..+.-++++. .+.+...|..-+.+..+.++-
T Consensus       727 kleEk~~~~~rAR~ildrarl--kNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQe-cp~sg~LWaEaI~le~~~~rk  803 (913)
T KOG0495|consen  727 KLEEKDGQLVRARSILDRARL--KNPKNALLWLESIRMELRAGNKEQAELLMAKALQE-CPSSGLLWAEAIWLEPRPQRK  803 (913)
T ss_pred             HHHHHhcchhhHHHHHHHHHh--cCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCccchhHHHHHHhccCcccc
Confidence            777788888888888888887  66754 77888888888999999999998888865 677777888878888788887


Q ss_pred             HHHHHHHHHHHhCCcccCHHHHHHHHHHhhhhCCHHHHHHHHHHHHhcCCCCchH-HHHHHHHHHHhCCChhHHHHHHHH
Q 000951          928 EEAMLVLNRMLRMRLVPTIATFTTLIHKFCKEAKFVDALKLKGTMELSGVKLDVV-SYNVLISGLCANGDVMPAFELYEE 1006 (1211)
Q Consensus       928 ~eA~~~~~~~~~~~~~p~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~ 1006 (1211)
                      ..+.+.+++-     +-|+.+...++..++...+++.|.+-|......  .||.. +|..+...+...|.-++-.+++++
T Consensus       804 Tks~DALkkc-----e~dphVllaia~lfw~e~k~~kar~Wf~Ravk~--d~d~GD~wa~fykfel~hG~eed~kev~~~  876 (913)
T KOG0495|consen  804 TKSIDALKKC-----EHDPHVLLAIAKLFWSEKKIEKAREWFERAVKK--DPDNGDAWAWFYKFELRHGTEEDQKEVLKK  876 (913)
T ss_pred             hHHHHHHHhc-----cCCchhHHHHHHHHHHHHHHHHHHHHHHHHHcc--CCccchHHHHHHHHHHHhCCHHHHHHHHHH
Confidence            7777776652     237778888999999999999999998866544  88776 777777888899998998999888


Q ss_pred             HHHcCCccCh-hhHHHHHHHH
Q 000951         1007 MKHKGLCPNS-TTYSVLIDAI 1026 (1211)
Q Consensus      1007 ~~~~g~~p~~-~~~~~l~~~~ 1026 (1211)
                      ...  ..|.+ ..|..+....
T Consensus       877 c~~--~EP~hG~~W~avSK~i  895 (913)
T KOG0495|consen  877 CET--AEPTHGELWQAVSKDI  895 (913)
T ss_pred             Hhc--cCCCCCcHHHHHhhhH
Confidence            754  57777 8888887664

>PRK14574 hmsH outer membrane protein; Provisional

Probab=99.82  E-value=1.4e-15  Score=184.12  Aligned_cols=450  Identities=10%  Similarity=0.017  Sum_probs=225.9

Q ss_pred             HHcCCChHHHHHHHHHHHhcCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHH
Q 000951          500 LCKGGKVCEAEDYVGHMKRIGVVPNSI-TFDCMIDGYGTLGDGLKAFSMFDEMVKLGHHPSIFTYGSLLKGLCKGGNLKE  578 (1211)
Q Consensus       500 ~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~  578 (1211)
                      ..+.|+++.|+..|.+..+.  .|+.. ....++..+...|+.++|+..+++.... ..........+...+...|++++
T Consensus        44 ~~r~Gd~~~Al~~L~qaL~~--~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p-~n~~~~~llalA~ly~~~gdyd~  120 (822)
T PRK14574         44 RARAGDTAPVLDYLQEESKA--GPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSS-MNISSRGLASAARAYRNEKRWDQ  120 (822)
T ss_pred             HHhCCCHHHHHHHHHHHHhh--CccchhhHHHHHHHHHHcCCcHHHHHHHHHhccC-CCCCHHHHHHHHHHHHHcCCHHH
Confidence            44556666666666666554  23321 1115555555556666666666655511 11122223333444555566666


Q ss_pred             HHHHHHHhhhCCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHH
Q 000951          579 AKRFLNSLHHIPSAVDTVAYNTILAETCKSGNLWEAIVLLDEMVQFNLLPDRYTYTILLAGLCRKGKVVSALLFFEKVVS  658 (1211)
Q Consensus       579 A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~  658 (1211)
                      |.++++.+.+..+. ++..+..++..+...++.++|++.++++...  .|+...+..++..+...++..+|++.++++++
T Consensus       121 Aiely~kaL~~dP~-n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ekll~  197 (822)
T PRK14574        121 ALALWQSSLKKDPT-NPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSEAVR  197 (822)
T ss_pred             HHHHHHHHHhhCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence            66666666555544 3444455555555556666666665555543  23433333333333334444445555555555


Q ss_pred             cCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHH
Q 000951          659 KRTFSPNNVMFTCLVDGLFKAGQSKAAMHISKIMDKEGVYPDTIAFNAVMDGFSRMGNMMMANDLLSTMRSRKLCPSLAT  738 (1211)
Q Consensus       659 ~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~  738 (1211)
                      ..  +.+...+..+..++.+.|-...|.++..+-... +.+....+  | .       .+.|.+..+...   ..+..  
T Consensus       198 ~~--P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~-f~~~~~~~--l-~-------~~~~a~~vr~a~---~~~~~--  259 (822)
T PRK14574        198 LA--PTSEEVLKNHLEILQRNRIVEPALRLAKENPNL-VSAEHYRQ--L-E-------RDAAAEQVRMAV---LPTRS--  259 (822)
T ss_pred             hC--CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccc-cCHHHHHH--H-H-------HHHHHHHHhhcc---ccccc--
Confidence            32  223444455555555555555555443322110 01111000  0 0       000000000000   00000  


Q ss_pred             HHHHHHHHHccC---ChHHHHHHHHHHHHC-CCCCCH-HHH----HHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhH
Q 000951          739 YNILLHGYSKKK---DLLMCSMLLNTMKME-GLLPDK-LTC----HSLILGFCETGMLEVGFKFLKKMIAEGTMVDCFTF  809 (1211)
Q Consensus       739 ~~~l~~~~~~~g---~~~~A~~~~~~~~~~-g~~p~~-~~~----~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~  809 (1211)
                               ...   -.+.|+.-++.++.. +..|.. ..|    .-.+.++...|++.++++.|+.+...+.+....+-
T Consensus       260 ---------~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~  330 (822)
T PRK14574        260 ---------ETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYAR  330 (822)
T ss_pred             ---------chhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHH
Confidence                     000   123344444444431 111211 111    12334556666666666666666665544334455


Q ss_pred             HHHHHHHHhcCcHHHHHHHHHHHHHCCC-----CCChhhHHHHHHHHHhhcchhhHHHHHHHHHHcC-------------
Q 000951          810 NVLMRKCCEAGEMGKAFDLFNIMNMLGV-----VPDTNTQDAIIMGLKRIAAFQESHFVLRGMAEKG-------------  871 (1211)
Q Consensus       810 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~g-------------  871 (1211)
                      ..++++|...++.++|+.+|+++.....     .++......|..+|...+++++|..+++++.+..             
T Consensus       331 ~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~  410 (822)
T PRK14574        331 RWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKE  410 (822)
T ss_pred             HHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCC
Confidence            6666666666667777776666654221     1122223556666666666666666666666511             


Q ss_pred             CCCCh-hHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCcccCHHHHH
Q 000951          872 LTPKC-TQYITLINGMCRVGNFQGAFKLKDEMEALGISSSDVAESAMVRGLAHCGKVEEAMLVLNRMLRMRLVPTIATFT  950 (1211)
Q Consensus       872 ~~p~~-~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~p~~~~~~  950 (1211)
                      .+||. ..+..++..+.-.|++.+|.+.++++... -|-+......+++++...|...+|+..++.+...+|. +..+..
T Consensus       411 pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~-aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~-~~~~~~  488 (822)
T PRK14574        411 PNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSST-APANQNLRIALASIYLARDLPRKAEQELKAVESLAPR-SLILER  488 (822)
T ss_pred             CCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCc-cHHHHH
Confidence            11222 34445566666777777777777777654 3666667777777777777777777777666665544 566666


Q ss_pred             HHHHHhhhhCCHHHHHHHHHHHHhcCCCCchHHHHH
Q 000951          951 TLIHKFCKEAKFVDALKLKGTMELSGVKLDVVSYNV  986 (1211)
Q Consensus       951 ~L~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~  986 (1211)
                      .++.++...|+|.+|..+.+.+.+.  .|+......
T Consensus       489 ~~~~~al~l~e~~~A~~~~~~l~~~--~Pe~~~~~~  522 (822)
T PRK14574        489 AQAETAMALQEWHQMELLTDDVISR--SPEDIPSQE  522 (822)
T ss_pred             HHHHHHHhhhhHHHHHHHHHHHHhh--CCCchhHHH
Confidence            7777777777777777766555544  665554333

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=99.82  E-value=3.6e-13  Score=147.04  Aligned_cols=462  Identities=11%  Similarity=-0.023  Sum_probs=331.2

Q ss_pred             HHcCCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH----HHCCCCCCHHHHHHHHHHHHcCCC
Q 000951          500 LCKGGKVCEAEDYVGHMKRIGVVPNSITFDCMIDGYGTLGDGLKAFSMFDEM----VKLGHHPSIFTYGSLLKGLCKGGN  575 (1211)
Q Consensus       500 ~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~~~~p~~~~~~~ll~~~~~~g~  575 (1211)
                      |++..-++.|.+++++..+. ++.+...|.+-...--.+|+.+...+++++-    ...|+..+...|..=...|-..|.
T Consensus       416 larLetYenAkkvLNkaRe~-iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~ags  494 (913)
T KOG0495|consen  416 LARLETYENAKKVLNKAREI-IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGS  494 (913)
T ss_pred             HHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCC
Confidence            34444455555555555443 2334455555444444555555555554432    234556666666666666666666


Q ss_pred             HHHHHHHHHHhhhCCCCc--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHH
Q 000951          576 LKEAKRFLNSLHHIPSAV--DTVAYNTILAETCKSGNLWEAIVLLDEMVQFNLLPDRYTYTILLAGLCRKGKVVSALLFF  653 (1211)
Q Consensus       576 ~~~A~~~~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~  653 (1211)
                      .-.+..+....+..|...  ...+|+.-.+.|.+.+.++-|+.+|...++- ++-+...|......--.+|..++-..+|
T Consensus       495 v~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqv-fp~k~slWlra~~~ek~hgt~Esl~All  573 (913)
T KOG0495|consen  495 VITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQV-FPCKKSLWLRAAMFEKSHGTRESLEALL  573 (913)
T ss_pred             hhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhh-ccchhHHHHHHHHHHHhcCcHHHHHHHH
Confidence            666666666666555432  2457777777888888888888888888774 2335556777666666788888888888


Q ss_pred             HHHHHcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC
Q 000951          654 EKVVSKRTFSPNNVMFTCLVDGLFKAGQSKAAMHISKIMDKEGVYPDTIAFNAVMDGFSRMGNMMMANDLLSTMRSRKLC  733 (1211)
Q Consensus       654 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~  733 (1211)
                      ++++..-  +.....|......+...|+...|..++.++.+.. +.+..+|.+.+..-.....++.|+.+|.+...  ..
T Consensus       574 qkav~~~--pkae~lwlM~ake~w~agdv~~ar~il~~af~~~-pnseeiwlaavKle~en~e~eraR~llakar~--~s  648 (913)
T KOG0495|consen  574 QKAVEQC--PKAEILWLMYAKEKWKAGDVPAARVILDQAFEAN-PNSEEIWLAAVKLEFENDELERARDLLAKARS--IS  648 (913)
T ss_pred             HHHHHhC--CcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhC-CCcHHHHHHHHHHhhccccHHHHHHHHHHHhc--cC
Confidence            8888853  4455667777788888899999999888887763 33567888888888888889999999998884  46


Q ss_pred             CCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHH
Q 000951          734 PSLATYNILLHGYSKKKDLLMCSMLLNTMKMEGLLPDKL-TCHSLILGFCETGMLEVGFKFLKKMIAEGTMVDCFTFNVL  812 (1211)
Q Consensus       734 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l  812 (1211)
                      |+...|..-+..-.-.++.++|++++++.++  ..|+.. .|..+++.+...++.+.|...|..-++. .+.....|-.|
T Consensus       649 gTeRv~mKs~~~er~ld~~eeA~rllEe~lk--~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllL  725 (913)
T KOG0495|consen  649 GTERVWMKSANLERYLDNVEEALRLLEEALK--SFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLWLLL  725 (913)
T ss_pred             CcchhhHHHhHHHHHhhhHHHHHHHHHHHHH--hCCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHHHHH
Confidence            7777887777777778889999999988888  567664 5666778888889999999988877764 23335577777


Q ss_pred             HHHHHhcCcHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhcchhhHHHHHHHHHHcCCCCCh-hHHHHHHHHHHhcCC
Q 000951          813 MRKCCEAGEMGKAFDLFNIMNMLGVVPDTNTQDAIIMGLKRIAAFQESHFVLRGMAEKGLTPKC-TQYITLINGMCRVGN  891 (1211)
Q Consensus       813 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~  891 (1211)
                      ...-.+.|++-+|..++++..-.+ +.+...|...+.+=.+.|+.+.|..+..++++  --|+. ..|..-+...-+.++
T Consensus       726 akleEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQ--ecp~sg~LWaEaI~le~~~~r  802 (913)
T KOG0495|consen  726 AKLEEKDGQLVRARSILDRARLKN-PKNALLWLESIRMELRAGNKEQAELLMAKALQ--ECPSSGLLWAEAIWLEPRPQR  802 (913)
T ss_pred             HHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCccchhHHHHHHhccCccc
Confidence            778888889999999999887655 44678888889988999999999999999988  55654 445555554445554


Q ss_pred             hhhHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCcccCHHHHHHHHHHhhhhCCHHHHHHHHHH
Q 000951          892 FQGAFKLKDEMEALGISSSDVAESAMVRGLAHCGKVEEAMLVLNRMLRMRLVPTIATFTTLIHKFCKEAKFVDALKLKGT  971 (1211)
Q Consensus       892 ~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~p~~~~~~~L~~~~~~~g~~~~A~~~~~~  971 (1211)
                      --.....+++     ...|+.+...++..+....++++|.+.|.+++..++. +-.+|-.+...+..+|.-++-.+++..
T Consensus       803 kTks~DALkk-----ce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d-~GD~wa~fykfel~hG~eed~kev~~~  876 (913)
T KOG0495|consen  803 KTKSIDALKK-----CEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPD-NGDAWAWFYKFELRHGTEEDQKEVLKK  876 (913)
T ss_pred             chHHHHHHHh-----ccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCc-cchHHHHHHHHHHHhCCHHHHHHHHHH
Confidence            3333332222     4566777788888899999999999999999998865 667888888889999998888888887


Q ss_pred             HHhcCCCCchH
Q 000951          972 MELSGVKLDVV  982 (1211)
Q Consensus       972 ~~~~~~~p~~~  982 (1211)
                      ....  +|...
T Consensus       877 c~~~--EP~hG  885 (913)
T KOG0495|consen  877 CETA--EPTHG  885 (913)
T ss_pred             Hhcc--CCCCC
Confidence            6655  77655

>PRK14574 hmsH outer membrane protein; Provisional

Probab=99.82  E-value=2e-15  Score=182.79  Aligned_cols=453  Identities=9%  Similarity=0.004  Sum_probs=296.1

Q ss_pred             HHhcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHHcCCHH
Q 000951          535 YGTLGDGLKAFSMFDEMVKLGHHPSI--FTYGSLLKGLCKGGNLKEAKRFLNSLHHIPSAVDTVAYNTILAETCKSGNLW  612 (1211)
Q Consensus       535 ~~~~g~~~~A~~~~~~m~~~~~~p~~--~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~  612 (1211)
                      ..+.|+++.|+..|++.++..  |+.  ..+ .++..+...|+.++|...+++... +.+........++..|...|+++
T Consensus        44 ~~r~Gd~~~Al~~L~qaL~~~--P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~-p~n~~~~~llalA~ly~~~gdyd  119 (822)
T PRK14574         44 RARAGDTAPVLDYLQEESKAG--PLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQS-SMNISSRGLASAARAYRNEKRWD  119 (822)
T ss_pred             HHhCCCHHHHHHHHHHHHhhC--ccchhhHH-HHHHHHHHcCCcHHHHHHHHHhcc-CCCCCHHHHHHHHHHHHHcCCHH
Confidence            446777778888887777643  332  233 666666677777777777777762 22223444444566677777777


Q ss_pred             HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 000951          613 EAIVLLDEMVQFNLLPDRYTYTILLAGLCRKGKVVSALLFFEKVVSKRTFSPNNVMFTCLVDGLFKAGQSKAAMHISKIM  692 (1211)
Q Consensus       613 ~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~  692 (1211)
                      +|+++|+++++... .+...+..++..+...++.++|++.++++...   .|+...+..++..+...++..+|++.++++
T Consensus       120 ~Aiely~kaL~~dP-~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~---dp~~~~~l~layL~~~~~~~~~AL~~~ekl  195 (822)
T PRK14574        120 QALALWQSSLKKDP-TNPDLISGMIMTQADAGRGGVVLKQATELAER---DPTVQNYMTLSYLNRATDRNYDALQASSEA  195 (822)
T ss_pred             HHHHHHHHHHhhCC-CCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc---CcchHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence            77777777777542 23455556666677777777777777777663   455555544444444455555577777777


Q ss_pred             HhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHH
Q 000951          693 DKEGVYPDTIAFNAVMDGFSRMGNMMMANDLLSTMRSRKLCPSLATYNILLHGYSKKKDLLMCSMLLNTMKMEGLLPDKL  772 (1211)
Q Consensus       693 ~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~  772 (1211)
                      ++.. +.+...+..+..++.+.|-...|.++..+-+.. +  +...+..|-        .+.|.+..+..    ..|+..
T Consensus       196 l~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~-f--~~~~~~~l~--------~~~~a~~vr~a----~~~~~~  259 (822)
T PRK14574        196 VRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNL-V--SAEHYRQLE--------RDAAAEQVRMA----VLPTRS  259 (822)
T ss_pred             HHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccc-c--CHHHHHHHH--------HHHHHHHHhhc----cccccc
Confidence            6652 334555566666666677666666555543311 1  111111110        11111111111    111100


Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHHc-C-CCCCHhh-HHH---HHHHHHhcCcHHHHHHHHHHHHHCCCCCChhhHHH
Q 000951          773 TCHSLILGFCETGMLEVGFKFLKKMIAE-G-TMVDCFT-FNV---LMRKCCEAGEMGKAFDLFNIMNMLGVVPDTNTQDA  846 (1211)
Q Consensus       773 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~-~~~~~~~-~~~---l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~  846 (1211)
                       .   -.   +---.+.|+.-++.++.. + .++.... ...   .+-++...|++.++++.|+.+...+.+-...+-..
T Consensus       260 -~---~~---r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a  332 (822)
T PRK14574        260 -E---TE---RFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRW  332 (822)
T ss_pred             -c---hh---hHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHH
Confidence             0   00   001234566666666653 1 1222122 222   33478889999999999999998775545567788


Q ss_pred             HHHHHHhhcchhhHHHHHHHHHHcCC----CC-ChhHHHHHHHHHHhcCChhhHHHHHHHHHHcCC-----------CCc
Q 000951          847 IIMGLKRIAAFQESHFVLRGMAEKGL----TP-KCTQYITLINGMCRVGNFQGAFKLKDEMEALGI-----------SSS  910 (1211)
Q Consensus       847 l~~~~~~~g~~~eA~~~~~~~~~~g~----~p-~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~-----------~~~  910 (1211)
                      ++++|...+++++|+.+|++++....    .| +......|..++...+++++|..+.+++.+...           .|+
T Consensus       333 ~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn  412 (822)
T PRK14574        333 AASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPN  412 (822)
T ss_pred             HHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCC
Confidence            99999999999999999999986321    12 234457889999999999999999999986311           122


Q ss_pred             h---HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCcccCHHHHHHHHHHhhhhCCHHHHHHHHHHHHhcCCCCchH-HHHH
Q 000951          911 D---VAESAMVRGLAHCGKVEEAMLVLNRMLRMRLVPTIATFTTLIHKFCKEAKFVDALKLKGTMELSGVKLDVV-SYNV  986 (1211)
Q Consensus       911 ~---~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~p~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~  986 (1211)
                      +   .....++..+...|++.+|++.+++++...|. |...+..++.++...|++.+|++.++.....  .|+.. ....
T Consensus       413 ~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~-n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l--~P~~~~~~~~  489 (822)
T PRK14574        413 DDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPA-NQNLRIALASIYLARDLPRKAEQELKAVESL--APRSLILERA  489 (822)
T ss_pred             ccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhh--CCccHHHHHH
Confidence            2   24456677888999999999999999998766 9999999999999999999999999876655  88655 7788


Q ss_pred             HHHHHHhCCChhHHHHHHHHHHHcCCccChhhHHHHH
Q 000951          987 LISGLCANGDVMPAFELYEEMKHKGLCPNSTTYSVLI 1023 (1211)
Q Consensus       987 l~~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~l~ 1023 (1211)
                      .+.++...|+|++|..+.+.+.+  ..|+..+...+.
T Consensus       490 ~~~~al~l~e~~~A~~~~~~l~~--~~Pe~~~~~~l~  524 (822)
T PRK14574        490 QAETAMALQEWHQMELLTDDVIS--RSPEDIPSQELD  524 (822)
T ss_pred             HHHHHHhhhhHHHHHHHHHHHHh--hCCCchhHHHHH
Confidence            88899999999999999998866  466664444433

>KOG4422 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.81  E-value=1.8e-15  Score=156.62  Aligned_cols=433  Identities=15%  Similarity=0.179  Sum_probs=293.1

Q ss_pred             HHcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHH--HHhCCChh-HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChh
Q 000951          116 LREGMVEYALETFQLMGFRGFNPSVYTCNMMLSF--MLKDRRVD-SVWLLFDDMLDRKICPNVATFNILINVSCVEGKLK  192 (1211)
Q Consensus       116 ~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~--l~~~~~~~-~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~  192 (1211)
                      ...|.+.++.-+|++|...|++.+...-..|++.  |..+.++. .-+++|-.|.+.| ..+..+|        +.|.+.
T Consensus       126 IS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~-E~S~~sW--------K~G~vA  196 (625)
T KOG4422|consen  126 ISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFG-EDSTSSW--------KSGAVA  196 (625)
T ss_pred             HhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccc-ccccccc--------ccccHH
Confidence            4568999999999999999988887776666655  33444443 4577888887765 3455555        566554


Q ss_pred             HHHHHHHHHHHcCCCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 000951          193 KAGYLLRKMEESGYVPNIVTYNTLLNWYCKKGRYKAAFKLIDCMASKGIEADVCTYNMFIDDLCRNNRSAKGYLLLKNMR  272 (1211)
Q Consensus       193 ~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~  272 (1211)
                      +  -+|+...     -...+|..+|.++||....+.|.+++.+-.....+.+..+||.+|.+-.-.    ....++.+|.
T Consensus       197 d--L~~E~~P-----KT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~----~~K~Lv~EMi  265 (625)
T KOG4422|consen  197 D--LLFETLP-----KTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYS----VGKKLVAEMI  265 (625)
T ss_pred             H--HHHhhcC-----CCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhh----ccHHHHHHHH
Confidence            4  3444433     256789999999999999999999999999998999999999999865432    2378999999


Q ss_pred             HCCCCCCHHHHHHHHHHHHHcCCHHHHH----HHHHHHHhCCCCCChHHHHHHHHHHHhcCCHHH-HHHHHHHHHH----
Q 000951          273 KRMITPNEVTYNTLINGFVKEGKIQVAS----RVFDEMSMLNFSPNSITYNELIDGHCCKGNFKE-AFRLLAMMEE----  343 (1211)
Q Consensus       273 ~~~~~p~~~~~~~li~~~~~~g~~~~A~----~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~-A~~~~~~m~~----  343 (1211)
                      +....||..|+|+++++..+.|+++.|+    +++.+|++.|+.|...+|..+|..+++.++..+ |..++.++..    
T Consensus       266 sqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltG  345 (625)
T KOG4422|consen  266 SQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTG  345 (625)
T ss_pred             HhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhcc
Confidence            9999999999999999999999988755    567889999999999999999999999888754 4444444432    


Q ss_pred             CCCCc----CHhHHHHHHHHHHhcCChHHHHHHHHHHHHCC----CCcCH---HHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 000951          344 MGLRP----NEVSYGALLNGFCKHAKFDLARSLLERMRTNG----ISISC---IAYTSVIDGLCKCGLLDEAMQLFNKMF  412 (1211)
Q Consensus       344 ~g~~p----~~~t~~~ll~~~~~~g~~~~a~~l~~~~~~~~----~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~  412 (1211)
                      ..++|    |...|...+..|.+..+.+.|.++..-.....    ++|+.   +-|..+....|.....+.-...|+.|.
T Consensus       346 K~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lV  425 (625)
T KOG4422|consen  346 KTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLV  425 (625)
T ss_pred             CcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            23333    55667788888999999999999987766532    23332   346778888888888899999999998


Q ss_pred             hCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHH
Q 000951          413 KDGLNPDLITFSVLINGFCKVGMTRKAKAVLCKMYRDGLVPNKIIYSTLIYYFCKMGKVTEAMKVYAVMNRNAQGSDHFT  492 (1211)
Q Consensus       413 ~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~  492 (1211)
                      -+-+-|+..+...++++..-.+.++-.-+++.++...|..-+.....-++.                .+.+..+.|+...
T Consensus       426 P~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~----------------~L~~~k~hp~tp~  489 (625)
T KOG4422|consen  426 PSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILM----------------LLARDKLHPLTPE  489 (625)
T ss_pred             cceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHH----------------HHhcCCCCCCChH
Confidence            777778888888888888888888888888888887774433333322222                2333333333221


Q ss_pred             HHHHHHHHHcCC-ChHHH-HHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC----CCCHHHHHHH
Q 000951          493 CNMLVASLCKGG-KVCEA-EDYVGHMKRIGVVPNSITFDCMIDGYGTLGDGLKAFSMFDEMVKLGH----HPSIFTYGSL  566 (1211)
Q Consensus       493 ~~~li~~~~~~g-~~~~A-~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~----~p~~~~~~~l  566 (1211)
                      ...+-....++- ++.++ ...-.++....  -.....+.+.-.+.+.|..++|.+++..+.+++.    .|......-+
T Consensus       490 r~Ql~~~~ak~aad~~e~~e~~~~R~r~~~--~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El  567 (625)
T KOG4422|consen  490 REQLQVAFAKCAADIKEAYESQPIRQRAQD--WPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAEL  567 (625)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhHHHHHhcc--CChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHH
Confidence            111111111110 01111 11112233322  2233455555566677777777777777654432    2333333344


Q ss_pred             HHHHHcCCCHHHHHHHHHHh
Q 000951          567 LKGLCKGGNLKEAKRFLNSL  586 (1211)
Q Consensus       567 l~~~~~~g~~~~A~~~~~~~  586 (1211)
                      ++.-........|...++.+
T Consensus       568 ~d~a~~~~spsqA~~~lQ~a  587 (625)
T KOG4422|consen  568 MDSAKVSNSPSQAIEVLQLA  587 (625)
T ss_pred             HHHHHhcCCHHHHHHHHHHH
Confidence            44444444455555544444

>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]

Probab=99.77  E-value=3.3e-13  Score=152.59  Aligned_cols=270  Identities=15%  Similarity=0.191  Sum_probs=161.1

Q ss_pred             HHHHhhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCC
Q 000951          128 FQLMGFRGFNPSVYTCNMMLSFMLKDRRVDSVWLLFDDMLDRKICPNVATFNILINVSCVEGKLKKAGYLLRKMEESGYV  207 (1211)
Q Consensus       128 ~~~~~~~g~~~~~~~~~~ll~~l~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~  207 (1211)
                      +-.+...|+.|+..||..++..||..|+.+.|- +|.-|.-...+.+...++.++.+....++.+.+.           .
T Consensus        13 la~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-----------e   80 (1088)
T KOG4318|consen   13 LALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-----------E   80 (1088)
T ss_pred             HHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-----------C
Confidence            344566788899999999999999999998888 8888877777778888899988888888777665           5


Q ss_pred             CCHhHHHHHHHHHHHcCChHHHHHHHHH-HHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH-HCCCCCCHHHHHH
Q 000951          208 PNIVTYNTLLNWYCKKGRYKAAFKLIDC-MASKGIEADVCTYNMFIDDLCRNNRSAKGYLLLKNMR-KRMITPNEVTYNT  285 (1211)
Q Consensus       208 p~~~~~~~li~~~~~~g~~~~A~~~~~~-m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~~~~p~~~~~~~  285 (1211)
                      |..-||+.|..+|...|++.. ++..++ |.            .++..+...|-......++..+. ..+.-||..+.  
T Consensus        81 p~aDtyt~Ll~ayr~hGDli~-fe~veqdLe------------~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~--  145 (1088)
T KOG4318|consen   81 PLADTYTNLLKAYRIHGDLIL-FEVVEQDLE------------SINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENA--  145 (1088)
T ss_pred             CchhHHHHHHHHHHhccchHH-HHHHHHHHH------------HHHhhhhhhccCcHHHHHHhhcccCcccchhHHHH--
Confidence            777889999999999998765 222222 11            12223333343333333333321 12233443322  


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhCCCC-CChHHHHHHHHHHHh-cCCHHHHHHHHHHHHHCCCCcCHhHHHHHHHHHHhc
Q 000951          286 LINGFVKEGKIQVASRVFDEMSMLNFS-PNSITYNELIDGHCC-KGNFKEAFRLLAMMEEMGLRPNEVSYGALLNGFCKH  363 (1211)
Q Consensus       286 li~~~~~~g~~~~A~~~~~~m~~~g~~-~~~~~~~~li~~~~~-~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~  363 (1211)
                       +.-..-.|-++.+.+++..++..... |-.+    .++-... ...+++-..+.....+   .|+..+|..+++.-...
T Consensus       146 -illlv~eglwaqllkll~~~Pvsa~~~p~~v----fLrqnv~~ntpvekLl~~cksl~e---~~~s~~l~a~l~~alaa  217 (1088)
T KOG4318|consen  146 -ILLLVLEGLWAQLLKLLAKVPVSAWNAPFQV----FLRQNVVDNTPVEKLLNMCKSLVE---APTSETLHAVLKRALAA  217 (1088)
T ss_pred             -HHHHHHHHHHHHHHHHHhhCCcccccchHHH----HHHHhccCCchHHHHHHHHHHhhc---CCChHHHHHHHHHHHhc
Confidence             22234455566666665555432111 1111    1222111 1223333333333322   36777777777777777


Q ss_pred             CChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCC
Q 000951          364 AKFDLARSLLERMRTNGISISCIAYTSVIDGLCKCGLLDEAMQLFNKMFKDGLNPDLITFSVLINGFCKVGM  435 (1211)
Q Consensus       364 g~~~~a~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~  435 (1211)
                      |+.+.|..++.+|.+.|++.+..-+-.|+-+   .+....+..++..|.+.|+.|+..|+..-+-.+..+|.
T Consensus       218 g~~d~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~  286 (1088)
T KOG4318|consen  218 GDVDGAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQ  286 (1088)
T ss_pred             CchhhHHHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchh
Confidence            7777777777777777776666554444443   56666667777777777777777776665555555443

>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]

Probab=99.75  E-value=2.6e-13  Score=153.47  Aligned_cols=759  Identities=13%  Similarity=0.105  Sum_probs=330.4

Q ss_pred             HHHHHHHcCCCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCC
Q 000951          197 LLRKMEESGYVPNIVTYNTLLNWYCKKGRYKAAFKLIDCMASKGIEADVCTYNMFIDDLCRNNRSAKGYLLLKNMRKRMI  276 (1211)
Q Consensus       197 ~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~  276 (1211)
                      ++-.+...|+.||-+||..+|..||..|+.+.|- +|.-|..+..+.+...|+.++.+....++.+.+.           
T Consensus        12 fla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-----------   79 (1088)
T KOG4318|consen   12 FLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-----------   79 (1088)
T ss_pred             HHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-----------
Confidence            4556667778888888888888888888887777 7777777777777778888887777777766654           


Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHH-CCCCcCHhHHHH
Q 000951          277 TPNEVTYNTLINGFVKEGKIQVASRVFDEMSMLNFSPNSITYNELIDGHCCKGNFKEAFRLLAMMEE-MGLRPNEVSYGA  355 (1211)
Q Consensus       277 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~g~~p~~~t~~~  355 (1211)
                      .|...||+.|..+|...|++..    |+...+        -.-.++..+...|.-..-..++..+.- -+.-||..+.  
T Consensus        80 ep~aDtyt~Ll~ayr~hGDli~----fe~veq--------dLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~--  145 (1088)
T KOG4318|consen   80 EPLADTYTNLLKAYRIHGDLIL----FEVVEQ--------DLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENA--  145 (1088)
T ss_pred             CCchhHHHHHHHHHHhccchHH----HHHHHH--------HHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHH--
Confidence            5677788888888888887665    222221        011122223333333333333322211 1222333221  


Q ss_pred             HHHHHHhcCChHHHHHHHHHHHHCC-CCcCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhc
Q 000951          356 LLNGFCKHAKFDLARSLLERMRTNG-ISISCIAYTSVIDGLCKCG-LLDEAMQLFNKMFKDGLNPDLITFSVLINGFCKV  433 (1211)
Q Consensus       356 ll~~~~~~g~~~~a~~l~~~~~~~~-~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~  433 (1211)
                       +.-..-.|-++.+.+++..+.... ..|..+    .+.-..... .+++-...-....+   .|+..+|..++..-...
T Consensus       146 -illlv~eglwaqllkll~~~Pvsa~~~p~~v----fLrqnv~~ntpvekLl~~cksl~e---~~~s~~l~a~l~~alaa  217 (1088)
T KOG4318|consen  146 -ILLLVLEGLWAQLLKLLAKVPVSAWNAPFQV----FLRQNVVDNTPVEKLLNMCKSLVE---APTSETLHAVLKRALAA  217 (1088)
T ss_pred             -HHHHHHHHHHHHHHHHHhhCCcccccchHHH----HHHHhccCCchHHHHHHHHHHhhc---CCChHHHHHHHHHHHhc
Confidence             111222333333333333222110 001000    011111111 11111111111111   24555555555555555


Q ss_pred             CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHH
Q 000951          434 GMTRKAKAVLCKMYRDGLVPNKIIYSTLIYYFCKMGKVTEAMKVYAVMNRNAQGSDHFTCNMLVASLCKGGKVCEAEDYV  513 (1211)
Q Consensus       434 g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~  513 (1211)
                      |+.+.|..++.+|.+.|++.+..-|..++-+   .++...+..+..-|...|+.|+..|+...+....++|....+..  
T Consensus       218 g~~d~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e--  292 (1088)
T KOG4318|consen  218 GDVDGAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEE--  292 (1088)
T ss_pred             CchhhHHHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhccc--
Confidence            5555555555555555555555444444433   44445555555555555555555555444444444333211111  


Q ss_pred             HHHHhcCCCCCHHHHHHHHHHHHhcC-----C-----HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHH
Q 000951          514 GHMKRIGVVPNSITFDCMIDGYGTLG-----D-----GLKAFSMFDEMVKLGHHPSIFTYGSLLKGLCKGGNLKEAKRFL  583 (1211)
Q Consensus       514 ~~~~~~g~~p~~~~~~~li~~~~~~g-----~-----~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~  583 (1211)
                            | .+....+++-...-.-.|     +     ..-....+.+..-.|+.....+|..... ....|.-++.+++-
T Consensus       293 ------~-sq~~hg~tAavrsaa~rg~~a~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c~~-l~hQgk~e~veqlv  364 (1088)
T KOG4318|consen  293 ------G-SQLAHGFTAAVRSAACRGLLANKRLRQNLRKSVIGSTKKLFLLGTDILEAIWSMCEK-LRHQGKGEEVEQLV  364 (1088)
T ss_pred             ------c-cchhhhhhHHHHHHHhcccHhHHHHHHHHHHHHHHHhhHHHHhccccchHHHHHHHH-HHHcCCCchHHHHH
Confidence                  1 111111111111111111     0     0111111222222232222222222221 12245555555555


Q ss_pred             HHhhhCC---CCccHHHHHHHHHHHHHcCCHHHHHHHHH--HHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHH
Q 000951          584 NSLHHIP---SAVDTVAYNTILAETCKSGNLWEAIVLLD--EMVQFNLLPDRYTYTILLAGLCRKGKVVSALLFFEKVVS  658 (1211)
Q Consensus       584 ~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~--~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~  658 (1211)
                      ..+..--   ...++..+..+..-|.+.-+..-...++.  +.+..+.  +....-.+. -+...-+...++.-+.....
T Consensus       365 g~l~npt~r~s~~~V~a~~~~lrqyFrr~e~~~~~~i~~~~qgls~~l--~se~tp~vs-ell~~lrkns~lr~lv~Lss  441 (1088)
T KOG4318|consen  365 GQLLNPTLRDSGQNVDAFGALLRQYFRRIERHICSRIYYAGQGLSLNL--NSEDTPRVS-ELLENLRKNSFLRQLVGLSS  441 (1088)
T ss_pred             hhhcCCccccCcchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhh--chhhhHHHH-HHHHHhCcchHHHHHhhhhH
Confidence            4443211   11123334444433333211100000000  1111000  000000000 01100011111111111110


Q ss_pred             c---CCCCC-------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 000951          659 K---RTFSP-------NNVMFTCLVDGLFKAGQSKAAMHISKIMDKEGVYPDTIAFNAVMDGFSRMGNMMMANDLLSTMR  728 (1211)
Q Consensus       659 ~---~~~~p-------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~  728 (1211)
                      .   ....|       -...-+.++..+++.-+..+++..-+.....- -+  ..|..|++.+....+.+.|..+.++..
T Consensus       442 ~Eler~he~~~~~~h~irdi~~ql~l~l~se~n~lK~l~~~ekye~~l-f~--g~ya~Li~l~~~hdkle~Al~~~~e~d  518 (1088)
T KOG4318|consen  442 TELERSHEPWPLIAHLIRDIANQLHLTLNSEYNKLKILCDEEKYEDLL-FA--GLYALLIKLMDLHDKLEYALSFVDEID  518 (1088)
T ss_pred             HHHhcccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hh--hHHHHHhhhHHHHHHHHHHHhchhhhc
Confidence            0   00111       11223444455555555555553333222111 11  456777777777777777777777765


Q ss_pred             HCC--CCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 000951          729 SRK--LCPSLATYNILLHGYSKKKDLLMCSMLLNTMKMEGLLPD--KLTCHSLILGFCETGMLEVGFKFLKKMIAEGTMV  804 (1211)
Q Consensus       729 ~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~  804 (1211)
                      ...  +.-|..-+..+.+...+.+...++..++.++.+.-...+  ..+..-++......|+.+.-.+.++-+...|+..
T Consensus       519 ~~d~s~~Ld~~~m~~l~dLL~r~~~l~dl~tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslgl~e  598 (1088)
T KOG4318|consen  519 TRDESIHLDLPLMTSLQDLLQRLAILYDLSTILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSLGLSE  598 (1088)
T ss_pred             ccchhhhcccHhHHHHHHHHHHhHHHHHHHHHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhh
Confidence            331  122455566677777777777777777777765322222  2233344455556677766666666665554432


Q ss_pred             CHhhHHHHHHHHHhcCcHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhcchhhHHHHHHHHHHcCCCCChhHHHHHHH
Q 000951          805 DCFTFNVLMRKCCEAGEMGKAFDLFNIMNMLGVVPDTNTQDAIIMGLKRIAAFQESHFVLRGMAEKGLTPKCTQYITLIN  884 (1211)
Q Consensus       805 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~g~~p~~~~~~~l~~  884 (1211)
                      +    .-++....+.++...|+++++.-.+ ..+|.+.....+...+.+.     +-...++..+         +..-+.
T Consensus       599 t----gPl~~vhLrkdd~s~a~ea~e~~~q-kyk~~P~~~e~lcrlv~ke-----~td~~qk~mD---------ls~~iq  659 (1088)
T KOG4318|consen  599 T----GPLWMVHLRKDDQSAAQEAPEPEEQ-KYKPYPKDLEGLCRLVYKE-----TTDSPQKTMD---------LSIPIQ  659 (1088)
T ss_pred             c----ccceEEEeeccchhhhhhcchHHHH-HhcCChHHHHHHHHHHHhh-----ccccHHHHHh---------hcchhH
Confidence            1    1222334445555555555543322 1122222222222222110     0000111000         000000


Q ss_pred             HHHhcCChhhHHHHHHHHH---HcC---------C---------CCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCcc
Q 000951          885 GMCRVGNFQGAFKLKDEME---ALG---------I---------SSSDVAESAMVRGLAHCGKVEEAMLVLNRMLRMRLV  943 (1211)
Q Consensus       885 ~~~~~g~~~eA~~~~~~~~---~~~---------~---------~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~  943 (1211)
                      .|.+.|++.+|-++.+.--   +.+         +         ..+......+...|.+.|++++|..++.++-   +.
T Consensus       660 ~f~k~g~~~~a~di~etpG~r~r~~RDr~~de~e~~~lEll~elt~~lg~~dRLL~sy~~~g~~erA~glwnK~Q---V~  736 (1088)
T KOG4318|consen  660 KFEKLGSCVDAGDITETPGVRCRNGRDRDTDEGEIVPLELLLELTHELGKNDRLLQSYLEEGRIERASGLWNKDQ---VS  736 (1088)
T ss_pred             HHHhcccccchhhccccCcccccCCCccccccCccccHHHHHHHHhHhHHHHHHHHHHHhhhHHHHHHhHHhhCc---CC
Confidence            1334444444433322110   000         0         0011123346678889999999999998854   56


Q ss_pred             cCHHHHHHHHHHhhhhCCHHHHHHHHH-HHHhcCCCCchH--HHHHHHH-HHHhCCCh-hHHHHHHHHHHHcCCccChhh
Q 000951          944 PTIATFTTLIHKFCKEAKFVDALKLKG-TMELSGVKLDVV--SYNVLIS-GLCANGDV-MPAFELYEEMKHKGLCPNSTT 1018 (1211)
Q Consensus       944 p~~~~~~~L~~~~~~~g~~~~A~~~~~-~~~~~~~~p~~~--~~~~l~~-~~~~~g~~-~~a~~~~~~~~~~g~~p~~~~ 1018 (1211)
                      |+......|+.++.++..-.+.-++.. .-+.....|...  +.+.-.. ..+-.+.. +.|.+.+....+.-...+...
T Consensus       737 k~~~~l~~LAsIlr~~n~evdvPe~q~e~ekas~~~~~f~ttt~~~~~~a~~a~q~~qkkaAkk~f~r~eeq~~v~tad~  816 (1088)
T KOG4318|consen  737 KSPMKLFHLASILRRMNEEVDVPEIQAETEKASELRTLFPTTTCYYEGYAFFATQTEQKKAAKKCFERLEEQLTVSTADE  816 (1088)
T ss_pred             cchHHHHHHHHHHHhhchhccchhHHHHHHHHHhcccccccchHhhhhhHHHHhhHHHHHHHHHHHHHHHHccCCCcHHH
Confidence            788888999999988765443333321 122222233211  1122222 23334444 467788888777532223366


Q ss_pred             HHHHHHHHHhcc
Q 000951         1019 YSVLIDAISKKE 1030 (1211)
Q Consensus      1019 ~~~l~~~~~~~~ 1030 (1211)
                      +..+...+....
T Consensus       817 ls~f~k~L~~nd  828 (1088)
T KOG4318|consen  817 LSDFLKCLVKND  828 (1088)
T ss_pred             HHHHHHHHHhcC
Confidence            666655554433

>KOG4422 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.74  E-value=2e-13  Score=141.80  Aligned_cols=361  Identities=13%  Similarity=0.173  Sum_probs=203.3

Q ss_pred             ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHH
Q 000951          314 NSITYNELIDGHCCKGNFKEAFRLLAMMEEMGLRPNEVSYGALLNGFCKHAKFDLARSLLERMRTNGISISCIAYTSVID  393 (1211)
Q Consensus       314 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~l~~~~~~~~~~~~~~~~~~li~  393 (1211)
                      ...+|..||.++|+--..+.|.+++++-.....+.+..+||.+|.+-.-    ....+++.+|....+.||..|+|+++.
T Consensus       206 T~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~----~~~K~Lv~EMisqkm~Pnl~TfNalL~  281 (625)
T KOG4422|consen  206 TDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSY----SVGKKLVAEMISQKMTPNLFTFNALLS  281 (625)
T ss_pred             CchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHh----hccHHHHHHHHHhhcCCchHhHHHHHH
Confidence            4456666666666666666666666666665556666666666654321    122566666666666666666666666


Q ss_pred             HHHHcCCHHH----HHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHH-HHHHHHHHHHC----CC----CCCHHHHHH
Q 000951          394 GLCKCGLLDE----AMQLFNKMFKDGLNPDLITFSVLINGFCKVGMTRK-AKAVLCKMYRD----GL----VPNKIIYST  460 (1211)
Q Consensus       394 ~~~~~g~~~~----A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~-A~~~~~~m~~~----g~----~p~~~~~~~  460 (1211)
                      ...+.|+++.    |.+++.+|.+.|++|...+|..+|..+++.++..+ |..++.+....    -+    +.|...|..
T Consensus       282 c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~  361 (625)
T KOG4422|consen  282 CAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQS  361 (625)
T ss_pred             HHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHH
Confidence            6666665543    34556667777777777777777777777666533 44444444332    12    234455666


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHcC----CCCC---HHHHHHHHHHHHcCCChHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 000951          461 LIYYFCKMGKVTEAMKVYAVMNRNA----QGSD---HFTCNMLVASLCKGGKVCEAEDYVGHMKRIGVVPNSITFDCMID  533 (1211)
Q Consensus       461 li~~~~~~g~~~~A~~~~~~~~~~~----~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~  533 (1211)
                      .++.|.+..+.+-|.++........    ..++   .+.|..+....|+....+.-...|+.|.-.-+-|+..+...++.
T Consensus       362 AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lr  441 (625)
T KOG4422|consen  362 AMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLR  441 (625)
T ss_pred             HHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHH
Confidence            7777778888888887776654321    1111   23455666677777777777777777776666677777777777


Q ss_pred             HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHHc-CCHH
Q 000951          534 GYGTLGDGLKAFSMFDEMVKLGHHPSIFTYGSLLKGLCKGGNLKEAKRFLNSLHHIPSAVDTVAYNTILAETCKS-GNLW  612 (1211)
Q Consensus       534 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g~~~  612 (1211)
                      +....|.++-.-+++.+++..|.........-+                +..+.+..+.|+......+-....++ -++.
T Consensus       442 A~~v~~~~e~ipRiw~D~~~~ght~r~~l~eei----------------l~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~  505 (625)
T KOG4422|consen  442 ALDVANRLEVIPRIWKDSKEYGHTFRSDLREEI----------------LMLLARDKLHPLTPEREQLQVAFAKCAADIK  505 (625)
T ss_pred             HHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHH----------------HHHHhcCCCCCCChHHHHHHHHHHHHHHHHH
Confidence            777777777777777777766543332222222                22222222222211111111111110 0111


Q ss_pred             HHH-HHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCCHH---HHHHHHHHHHHcCCHHHHHHH
Q 000951          613 EAI-VLLDEMVQFNLLPDRYTYTILLAGLCRKGKVVSALLFFEKVVSKRTFSPNNV---MFTCLVDGLFKAGQSKAAMHI  688 (1211)
Q Consensus       613 ~A~-~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~---~~~~l~~~~~~~g~~~~A~~~  688 (1211)
                      ++. ..-.++.+...+|  ...+..+-.+.+.|..++|.+++.-..+++.-.|-..   ...-+++.-...++...|..+
T Consensus       506 e~~e~~~~R~r~~~~~~--t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~  583 (625)
T KOG4422|consen  506 EAYESQPIRQRAQDWPA--TSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEV  583 (625)
T ss_pred             HHHHhhHHHHHhccCCh--hHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHH
Confidence            111 1122333333332  3334444456677777777777777755543333332   333455555666777777777


Q ss_pred             HHHHHhCC
Q 000951          689 SKIMDKEG  696 (1211)
Q Consensus       689 ~~~~~~~g  696 (1211)
                      ++.|...+
T Consensus       584 lQ~a~~~n  591 (625)
T KOG4422|consen  584 LQLASAFN  591 (625)
T ss_pred             HHHHHHcC
Confidence            77775543

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.74  E-value=8.6e-14  Score=144.87  Aligned_cols=488  Identities=15%  Similarity=0.092  Sum_probs=242.3

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH-HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH----HHHHHHH
Q 000951          423 FSVLINGFCKVGMTRKAKAVLCKMYRDGLVPNKIIY-STLIYYFCKMGKVTEAMKVYAVMNRNAQGSDH----FTCNMLV  497 (1211)
Q Consensus       423 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~-~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~li  497 (1211)
                      ...|..-|..+....+|+..++-.++...-||.-.. ..+...+.+...+.+|++.|+..+..-+..+.    ...+.+.
T Consensus       204 l~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nig  283 (840)
T KOG2003|consen  204 LFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIG  283 (840)
T ss_pred             HHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcC
Confidence            344555566677777888888777777666665433 23445666777788888888777665443332    2334444


Q ss_pred             HHHHcCCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHH
Q 000951          498 ASLCKGGKVCEAEDYVGHMKRIGVVPNSITFDCMIDGYGTLGDGLKAFSMFDEMVKLGHHPSIFTYGSLLKGLCKGGNLK  577 (1211)
Q Consensus       498 ~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~  577 (1211)
                      -.+.+.|.+++|+..|+...+.  .||..+-..|+-.+...|+-++..+.|.+|+.-...||..-|.       +     
T Consensus       284 vtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi-------~-----  349 (840)
T KOG2003|consen  284 VTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYI-------K-----  349 (840)
T ss_pred             eeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCccccc-------C-----
Confidence            5567778888888888777664  5777665556666666777777777888877654444432221       0     


Q ss_pred             HHHHHHHHhhhCCCCccHHHHHHH-----HHHHHHcC--CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHH
Q 000951          578 EAKRFLNSLHHIPSAVDTVAYNTI-----LAETCKSG--NLWEAIVLLDEMVQFNLLPDRYTYTILLAGLCRKGKVVSAL  650 (1211)
Q Consensus       578 ~A~~~~~~~~~~~~~~~~~~~~~l-----i~~~~~~g--~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~  650 (1211)
                                 ..-.|+....+.-     +.-..+..  +-++|+-.--+++.--+.||...      +|      +-.+
T Consensus       350 -----------~~ddp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~------g~------dwcl  406 (840)
T KOG2003|consen  350 -----------EKDDPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAA------GC------DWCL  406 (840)
T ss_pred             -----------CcCCcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhc------cc------HHHH
Confidence                       0011121111111     11111111  11111111111111111111110      00      0000


Q ss_pred             HHHHHHHHcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 000951          651 LFFEKVVSKRTFSPNNVMFTCLVDGLFKAGQSKAAMHISKIMDKEGVYPDTIAFNAVMDGFSRMGNMMMANDLLSTMRSR  730 (1211)
Q Consensus       651 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~  730 (1211)
                      +.++...-   .+.-...-..-...+.++|+++.|+++++-..+...+..                              
T Consensus       407 e~lk~s~~---~~la~dlei~ka~~~lk~~d~~~aieilkv~~~kdnk~~------------------------------  453 (840)
T KOG2003|consen  407 ESLKASQH---AELAIDLEINKAGELLKNGDIEGAIEILKVFEKKDNKTA------------------------------  453 (840)
T ss_pred             HHHHHhhh---hhhhhhhhhhHHHHHHhccCHHHHHHHHHHHHhccchhh------------------------------
Confidence            00000000   000000000111223445555555555444433221111                              


Q ss_pred             CCCCCHHHHHHHHHHHHc--cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhh
Q 000951          731 KLCPSLATYNILLHGYSK--KKDLLMCSMLLNTMKMEGLLPDKLTCHSLILGFCETGMLEVGFKFLKKMIAEGTMVDCFT  808 (1211)
Q Consensus       731 ~~~p~~~~~~~l~~~~~~--~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~  808 (1211)
                           ...-+.|-..+.-  -+++.+|.++-+.++... .-+..+...-+..-...|++++|...|++++.....- ...
T Consensus       454 -----saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc-~ea  526 (840)
T KOG2003|consen  454 -----SAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASC-TEA  526 (840)
T ss_pred             -----HHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHH-HHH
Confidence                 1111222111111  123444444444443310 0122222222233334566666666666665532111 122


Q ss_pred             HHHHHHHHHhcCcHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhcchhhHHHHHHHHHHcCCCC-ChhHHHHHHHHHH
Q 000951          809 FNVLMRKCCEAGEMGKAFDLFNIMNMLGVVPDTNTQDAIIMGLKRIAAFQESHFVLRGMAEKGLTP-KCTQYITLINGMC  887 (1211)
Q Consensus       809 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~g~~p-~~~~~~~l~~~~~  887 (1211)
                      ...++-.+.+.|++++|++.|-++... +..+......+++.|....+...|++++.++..  +-| |+..+..|+..|-
T Consensus       527 lfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~s--lip~dp~ilskl~dlyd  603 (840)
T KOG2003|consen  527 LFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQANS--LIPNDPAILSKLADLYD  603 (840)
T ss_pred             HHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcc--cCCCCHHHHHHHHHHhh
Confidence            223334455666666666666555321 123455555666666666666666666666655  555 3466667777777


Q ss_pred             hcCChhhHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCcccCHHHHHHHHH-HhhhhCCHHHHH
Q 000951          888 RVGNFQGAFKLKDEMEALGISSSDVAESAMVRGLAHCGKVEEAMLVLNRMLRMRLVPTIATFTTLIH-KFCKEAKFVDAL  966 (1211)
Q Consensus       888 ~~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~p~~~~~~~L~~-~~~~~g~~~~A~  966 (1211)
                      +.|+-.+|.+++-..... ++-+.++...|+.-|....-+++|+..|+++.-+  .|+..-|..|+. ++++.|+|+.|.
T Consensus       604 qegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaali--qp~~~kwqlmiasc~rrsgnyqka~  680 (840)
T KOG2003|consen  604 QEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAALI--QPNQSKWQLMIASCFRRSGNYQKAF  680 (840)
T ss_pred             cccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhc--CccHHHHHHHHHHHHHhcccHHHHH
Confidence            777777777666555443 5666666666776677777777777777776553  366666765554 445667777777


Q ss_pred             HHHHHHHhcCCCC-chHHHHHHHHHHHhCC
Q 000951          967 KLKGTMELSGVKL-DVVSYNVLISGLCANG  995 (1211)
Q Consensus       967 ~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g  995 (1211)
                      ++|+..+..  -| |......|.......|
T Consensus       681 d~yk~~hrk--fpedldclkflvri~~dlg  708 (840)
T KOG2003|consen  681 DLYKDIHRK--FPEDLDCLKFLVRIAGDLG  708 (840)
T ss_pred             HHHHHHHHh--CccchHHHHHHHHHhcccc
Confidence            777766654  45 3445555555544444

>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.73  E-value=5.2e-10  Score=127.93  Aligned_cols=844  Identities=14%  Similarity=0.096  Sum_probs=401.4

Q ss_pred             HHHHHHcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCh
Q 000951          112 IRVYLREGMVEYALETFQLMGFRGFNPSVYTCNMMLSFMLKDRRVDSVWLLFDDMLDRKICPNVATFNILINVSCVEGKL  191 (1211)
Q Consensus       112 ~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~l~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~  191 (1211)
                      ...+...|.+++|..+--... +|+-.+..|-+.+-..=...|...--+..|.-+...| +.|..----+++.-..+|+.
T Consensus       367 FneLfaqG~Y~eAAkvAAsSP-rgILRt~~Ti~kFq~V~a~~Gq~sPLLqYFg~LLdqG-kLNk~ETLEL~RpVL~Q~Rk  444 (1666)
T KOG0985|consen  367 FNELFAQGEYEEAAKVAASSP-RGILRTPGTINKFQSVPAQPGQPSPLLQYFGTLLDQG-KLNKYETLELCRPVLQQGRK  444 (1666)
T ss_pred             HHHHHhCccHHHHHHHHHhCc-hhhhcCHHHHHHHHcCCCCCCCCCcHHHHHHHHHhcc-cccHHHHHHHHHHHHhhhHH
Confidence            344555677777766655433 2344566666666655566666666777777776665 33443333344443344433


Q ss_pred             hHHHHHHHHHHHcCCCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 000951          192 KKAGYLLRKMEESGYVPNIVTYNTLLNWYCKKGRYKAAFKLIDCMASKGIEADVCTYNMFIDDLCRNNRSAKGYLLLKNM  271 (1211)
Q Consensus       192 ~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m  271 (1211)
                          ++++.+...    +..+++.=+.-..+--+..-|+.++.+..   +      -+..+..++..|+++++.-+..  
T Consensus       445 ----qLlekWl~E----dKLeCSEELGDlVK~~d~~lAL~iYlrAn---v------p~KVi~cfAE~Gqf~KiilY~k--  505 (1666)
T KOG0985|consen  445 ----QLLEKWLKE----DKLECSEELGDLVKPYDTTLALSIYLRAN---V------PAKVIQCFAETGQFKKIILYAK--  505 (1666)
T ss_pred             ----HHHHHHhhh----hhhhhhHHhcCccccCCchHHHHHHHHcC---C------cHHHHHHHHHhcchhHHHHHHH--
Confidence                333333321    11111111111111111112222222211   0      1223444455555555444333  


Q ss_pred             HHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHh
Q 000951          272 RKRMITPNEVTYNTLINGFVKEGKIQVASRVFDEMSMLNFSPNSITYNELIDGHCCKGNFKEAFRLLAMMEEMGLRPNEV  351 (1211)
Q Consensus       272 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~  351 (1211)
                       +.|..||...+   +....+ -..+.+.+....|.+..  |...-.+.+.+.+........+..++-...+. ..|+..
T Consensus       506 -KvGyTPdymfl---Lq~l~r-~sPD~~~qFa~~l~Q~~--~~~~die~I~DlFme~N~iQq~TSFLLdaLK~-~~Pd~g  577 (1666)
T KOG0985|consen  506 -KVGYTPDYMFL---LQQLKR-SSPDQALQFAMMLVQDE--EPLADIEQIVDLFMELNLIQQCTSFLLDALKL-NSPDEG  577 (1666)
T ss_pred             -HcCCCccHHHH---HHHHHc-cChhHHHHHHHHhhccC--CCcccHHHHHHHHHHHHhhhhhHHHHHHHhcC-CChhhh
Confidence             34666664433   222222 46677777666666542  23444566666666666666666666555543 245443


Q ss_pred             HH-HHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHH----
Q 000951          352 SY-GALLNGFCKHAKFDLARSLLERMRTNGISISCIAYTSVIDGLCKCGLLDEAMQLFNKMFKDGLNPDLITFSVL----  426 (1211)
Q Consensus       352 t~-~~ll~~~~~~g~~~~a~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l----  426 (1211)
                      .. +.++..- ..+    |.++-+.+..++. -+..-+..+...+.+.|-+.+|++.|.++.+-  +. .+..+.+    
T Consensus       578 ~LQTrLLE~N-L~~----aPqVADAILgN~m-FtHyDra~IAqLCEKAGL~qraLehytDl~DI--KR-~vVhth~L~pE  648 (1666)
T KOG0985|consen  578 HLQTRLLEMN-LVH----APQVADAILGNDM-FTHYDRAEIAQLCEKAGLLQRALEHYTDLYDI--KR-VVVHTHLLNPE  648 (1666)
T ss_pred             hHHHHHHHHH-hcc----chHHHHHHHhccc-cccccHHHHHHHHHhcchHHHHHHhcccHHHH--HH-HHHHhccCCHH
Confidence            32 2222221 112    2222222222221 11122556666777777777777777665431  11 1111111    


Q ss_pred             -HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-----------CCCCCHHHHH
Q 000951          427 -INGFCKVGMTRKAKAVLCKMYRDGLVPNKIIYSTLIYYFCKMGKVTEAMKVYAVMNRN-----------AQGSDHFTCN  494 (1211)
Q Consensus       427 -i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----------~~~~~~~~~~  494 (1211)
                       +..|.-.-.++++.+.++.|+..++.-|..+...+..-|+..--.+.-+++|+....-           .+..|+.+.-
T Consensus       649 wLv~yFg~lsve~s~eclkaml~~NirqNlQi~VQvatky~eqlg~~~li~lFE~fks~eGL~yfLgSivn~seDpevh~  728 (1666)
T KOG0985|consen  649 WLVNYFGSLSVEDSLECLKAMLSANIRQNLQIVVQVATKYHEQLGAQALIELFESFKSYEGLYYFLGSIVNFSEDPEVHF  728 (1666)
T ss_pred             HHHHHHHhcCHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCHHHHHHHHHhhccchhHHHHHHHHhccccCchHHH
Confidence             1234444556777777777777777777766666666666655555555555544321           2334555556


Q ss_pred             HHHHHHHcCCChHHHHHHHHHHH------------h---------------cCCCCCHHHHH------HHHHHHHhcCCH
Q 000951          495 MLVASLCKGGKVCEAEDYVGHMK------------R---------------IGVVPNSITFD------CMIDGYGTLGDG  541 (1211)
Q Consensus       495 ~li~~~~~~g~~~~A~~~~~~~~------------~---------------~g~~p~~~~~~------~li~~~~~~g~~  541 (1211)
                      ..|.+-|+.|++.+.+++.++-.            +               .++.+|.+.|.      ..|..|.+.-++
T Consensus       729 KYIqAA~kt~QikEvERicresn~YdpErvKNfLkeAkL~DqlPLiiVCDRf~fVhdlvlYLyrnn~~kyIE~yVQkvNp  808 (1666)
T KOG0985|consen  729 KYIQAACKTGQIKEVERICRESNCYDPERVKNFLKEAKLTDQLPLIIVCDRFDFVHDLVLYLYRNNLQKYIEIYVQKVNP  808 (1666)
T ss_pred             HHHHHHHhhccHHHHHHHHhccccCCHHHHHHHHHhccccccCceEEEecccccHHHHHHHHHHhhHHHHHHHHHhhcCC
Confidence            66777777777777766544321            1               11222322221      123333332222


Q ss_pred             HHHHHHHHHHHHCCCCCCHHH------------HHHHHHHHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHHcC
Q 000951          542 LKAFSMFDEMVKLGHHPSIFT------------YGSLLKGLCKGGNLKEAKRFLNSLHHIPSAVDTVAYNTILAETCKSG  609 (1211)
Q Consensus       542 ~~A~~~~~~m~~~~~~p~~~~------------~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g  609 (1211)
                      ...-.+...+++-.+.-+ ..            ..-|+.-+-+.+++.--...++..+..|.. |+.++|+|...|..++
T Consensus       809 s~~p~VvG~LLD~dC~E~-~ik~Li~~v~gq~~~deLv~EvEkRNRLklLlp~LE~~i~eG~~-d~a~hnAlaKIyIDSN  886 (1666)
T KOG0985|consen  809 SRTPQVVGALLDVDCSED-FIKNLILSVRGQFPVDELVEEVEKRNRLKLLLPWLESLIQEGSQ-DPATHNALAKIYIDSN  886 (1666)
T ss_pred             cccchhhhhhhcCCCcHH-HHHHHHHHHhccCChHHHHHHHHhhhhHHHHHHHHHHHHhccCc-chHHHhhhhheeecCC
Confidence            221111111111111000 00            011112222333344444444444444443 5555555555554433


Q ss_pred             CHHHH---------------------------------------------------------------------------
Q 000951          610 NLWEA---------------------------------------------------------------------------  614 (1211)
Q Consensus       610 ~~~~A---------------------------------------------------------------------------  614 (1211)
                      +-.+-                                                                           
T Consensus       887 NnPE~fLkeN~yYDs~vVGkYCEKRDP~lA~vaYerGqcD~elI~vcNeNSlfK~~aRYlv~R~D~~LW~~VL~e~n~~r  966 (1666)
T KOG0985|consen  887 NNPERFLKENPYYDSKVVGKYCEKRDPHLACVAYERGQCDLELINVCNENSLFKSQARYLVERSDPDLWAKVLNEENPYR  966 (1666)
T ss_pred             CChHHhcccCCcchhhHHhhhhcccCCceEEEeecccCCcHHHHHhcCchhHHHHHHHHHHhccChHHHHHHHhccChHH
Confidence            21111                                                                           


Q ss_pred             HHHHHHHHhCCCC--CCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 000951          615 IVLLDEMVQFNLL--PDRYTYTILLAGLCRKGKVVSALLFFEKVVSKRTFSPNNVMFTCLVDGLFKAGQSKAAMHISKIM  692 (1211)
Q Consensus       615 ~~~~~~m~~~~~~--p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~  692 (1211)
                      +.+.++..+-+++  .|......-+.++...+-+.+-++++++++-....-........|+-.-+-.-+.....++.+.+
T Consensus       967 RqLiDqVv~tal~E~~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAikad~trVm~YI~rL 1046 (1666)
T KOG0985|consen  967 RQLIDQVVQTALPETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKADRTRVMEYINRL 1046 (1666)
T ss_pred             HHHHHHHHHhcCCccCChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhcChHHHHHHHHHh
Confidence            0111111111110  12222233334444555555555555555432211111111111111111111122222222222


Q ss_pred             HhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC---------------------CCCCCHHHHHHHHHHHHccCC
Q 000951          693 DKEGVYPDTIAFNAVMDGFSRMGNMMMANDLLSTMRSR---------------------KLCPSLATYNILLHGYSKKKD  751 (1211)
Q Consensus       693 ~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---------------------~~~p~~~~~~~l~~~~~~~g~  751 (1211)
                      .... .|+      +.......+-+++|..+|++.--.                     .-...+..|..++.+..+.|.
T Consensus      1047 dnyD-a~~------ia~iai~~~LyEEAF~ifkkf~~n~~A~~VLie~i~~ldRA~efAe~~n~p~vWsqlakAQL~~~~ 1119 (1666)
T KOG0985|consen 1047 DNYD-APD------IAEIAIENQLYEEAFAIFKKFDMNVSAIQVLIENIGSLDRAYEFAERCNEPAVWSQLAKAQLQGGL 1119 (1666)
T ss_pred             ccCC-chh------HHHHHhhhhHHHHHHHHHHHhcccHHHHHHHHHHhhhHHHHHHHHHhhCChHHHHHHHHHHHhcCc
Confidence            1110 010      111112223334444444332000                     001145677788888888888


Q ss_pred             hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHH
Q 000951          752 LLMCSMLLNTMKMEGLLPDKLTCHSLILGFCETGMLEVGFKFLKKMIAEGTMVDCFTFNVLMRKCCEAGEMGKAFDLFNI  831 (1211)
Q Consensus       752 ~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~  831 (1211)
                      ..+|++-|-++      .|+..|...+....+.|.|++-.+++..+.+..-.|.  +-..|+-+|++.+++.+-.+..  
T Consensus      1120 v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~--id~eLi~AyAkt~rl~elE~fi-- 1189 (1666)
T KOG0985|consen 1120 VKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPY--IDSELIFAYAKTNRLTELEEFI-- 1189 (1666)
T ss_pred             hHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCcc--chHHHHHHHHHhchHHHHHHHh--
Confidence            88887777443      2556677777788888888888888777776544433  4456777788887777655543  


Q ss_pred             HHHCCCCCChhhHHHHHHHHHhhcchhhHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCch
Q 000951          832 MNMLGVVPDTNTQDAIIMGLKRIAAFQESHFVLRGMAEKGLTPKCTQYITLINGMCRVGNFQGAFKLKDEMEALGISSSD  911 (1211)
Q Consensus       832 ~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~  911 (1211)
                           ..|+.......++-|...|.++.|.-+|.....         |..|+..+...|+++.|...-+++-      +.
T Consensus      1190 -----~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~vSN---------~a~La~TLV~LgeyQ~AVD~aRKAn------s~ 1249 (1666)
T KOG0985|consen 1190 -----AGPNVANIQQVGDRCFEEKMYEAAKLLYSNVSN---------FAKLASTLVYLGEYQGAVDAARKAN------ST 1249 (1666)
T ss_pred             -----cCCCchhHHHHhHHHhhhhhhHHHHHHHHHhhh---------HHHHHHHHHHHHHHHHHHHHhhhcc------ch
Confidence                 246777777777777788888888777776654         6677777777777777766655442      23


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCcccCHHHHHHHHHHhhhhCCHHHHHHHHHHHHhcCCCCchH-HHHHHHHH
Q 000951          912 VAESAMVRGLAHCGKVEEAMLVLNRMLRMRLVPTIATFTTLIHKFCKEAKFVDALKLKGTMELSGVKLDVV-SYNVLISG  990 (1211)
Q Consensus       912 ~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~p~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~  990 (1211)
                      .+|..+..++...+.+.-|.     +--.++--.+.-+..|..-|-..|-++|-+.+++.  .+|++.-.- .+.-|+-.
T Consensus      1250 ktWK~VcfaCvd~~EFrlAQ-----iCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea--~LGLERAHMgmfTELaiL 1322 (1666)
T KOG0985|consen 1250 KTWKEVCFACVDKEEFRLAQ-----ICGLNIIVHADELEELIEYYQDRGYFEELISLLEA--GLGLERAHMGMFTELAIL 1322 (1666)
T ss_pred             hHHHHHHHHHhchhhhhHHH-----hcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHh--hhchhHHHHHHHHHHHHH
Confidence            45555555555444443332     22222222444555666667777777777777553  334444333 33334434


Q ss_pred             HHhCCChhHHHHHHHHHHHcCCcc-------ChhhHHHHHHHHHhcccchHHHHHHH
Q 000951          991 LCANGDVMPAFELYEEMKHKGLCP-------NSTTYSVLIDAISKKENNLVKGEILL 1040 (1211)
Q Consensus       991 ~~~~g~~~~a~~~~~~~~~~g~~p-------~~~~~~~l~~~~~~~~~~~~~a~~~~ 1040 (1211)
                      |+ .-+.+.-.+.++....+---|       ....|.++.-.+.+...++.+|..+.
T Consensus      1323 Ys-kykp~km~EHl~LFwsRvNipKviRA~eqahlW~ElvfLY~~y~eyDNAa~tmm 1378 (1666)
T KOG0985|consen 1323 YS-KYKPEKMMEHLKLFWSRVNIPKVIRAAEQAHLWSELVFLYDKYEEYDNAALTMM 1378 (1666)
T ss_pred             HH-hcCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHH
Confidence            43 334555555555444321111       22566777666666666666554443

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.71  E-value=2.9e-15  Score=165.53  Aligned_cols=285  Identities=11%  Similarity=0.041  Sum_probs=238.9

Q ss_pred             CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCC----CHHHHHHHHHHHHhcCChHHH
Q 000951          715 GNMMMANDLLSTMRSRKLCPSLATYNILLHGYSKKKDLLMCSMLLNTMKMEGLLP----DKLTCHSLILGFCETGMLEVG  790 (1211)
Q Consensus       715 g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p----~~~~~~~l~~~~~~~g~~~~A  790 (1211)
                      -+..+|...|.++.+. +.........++.+|...+++++|..+|+.+.+  ..|    +...|.+.++-+-+    +-+
T Consensus       333 y~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~--~~p~rv~~meiyST~LWHLq~----~v~  405 (638)
T KOG1126|consen  333 YNCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRR--IEPYRVKGMEIYSTTLWHLQD----EVA  405 (638)
T ss_pred             HHHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hccccccchhHHHHHHHHHHh----hHH
Confidence            3567899999996654 222456667788999999999999999999987  455    44566666655422    334


Q ss_pred             HHHHHHHHHcCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHHHHHCCCCC-ChhhHHHHHHHHHhhcchhhHHHHHHHHHH
Q 000951          791 FKFLKKMIAEGTMVDCFTFNVLMRKCCEAGEMGKAFDLFNIMNMLGVVP-DTNTQDAIIMGLKRIAAFQESHFVLRGMAE  869 (1211)
Q Consensus       791 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~  869 (1211)
                      +.++.+-+-.--+..+.+|-+++++|.-+++.+.|++.|+++++.  .| ...+|..++.-+.....+|+|...|+.++.
T Consensus       406 Ls~Laq~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQl--dp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~  483 (638)
T KOG1126|consen  406 LSYLAQDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQL--DPRFAYAYTLLGHESIATEEFDKAMKSFRKALG  483 (638)
T ss_pred             HHHHHHHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhcc--CCccchhhhhcCChhhhhHHHHhHHHHHHhhhc
Confidence            444443332222334789999999999999999999999999974  45 578899999999999999999999999998


Q ss_pred             cCCCCCh-hHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCcccCHHH
Q 000951          870 KGLTPKC-TQYITLINGMCRVGNFQGAFKLKDEMEALGISSSDVAESAMVRGLAHCGKVEEAMLVLNRMLRMRLVPTIAT  948 (1211)
Q Consensus       870 ~g~~p~~-~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~p~~~~  948 (1211)
                        ++|.+ .+|..++..|.++++++.|.-.|+++.+.+ |.+.++..+++..+.+.|+.++|+++|+++..+++. |+..
T Consensus       484 --~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k-n~l~  559 (638)
T KOG1126|consen  484 --VDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK-NPLC  559 (638)
T ss_pred             --CCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC-Cchh
Confidence              88976 899999999999999999999999999874 778888899999999999999999999999999988 9999


Q ss_pred             HHHHHHHhhhhCCHHHHHHHHHHHHhcCCCCchH-HHHHHHHHHHhCCChhHHHHHHHHHHHcCCccCh
Q 000951          949 FTTLIHKFCKEAKFVDALKLKGTMELSGVKLDVV-SYNVLISGLCANGDVMPAFELYEEMKHKGLCPNS 1016 (1211)
Q Consensus       949 ~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~p~~ 1016 (1211)
                      -...+.++...+++++|+..++.+++.  .|+.. .+..++.+|..-|+.+.|+..+--+.+  ++|..
T Consensus       560 ~~~~~~il~~~~~~~eal~~LEeLk~~--vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~--ldpkg  624 (638)
T KOG1126|consen  560 KYHRASILFSLGRYVEALQELEELKEL--VPQESSVFALLGKIYKRLGNTDLALLHFSWALD--LDPKG  624 (638)
T ss_pred             HHHHHHHHHhhcchHHHHHHHHHHHHh--CcchHHHHHHHHHHHHHHccchHHHHhhHHHhc--CCCcc
Confidence            999999999999999999999999987  89766 788889999999999999999988855  56655

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.70  E-value=1.4e-13  Score=145.63  Aligned_cols=220  Identities=13%  Similarity=0.076  Sum_probs=168.2

Q ss_pred             HhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhcchhhHH
Q 000951          782 CETGMLEVGFKFLKKMIAEGTMVDCFTFNVLMRKCCEAGEMGKAFDLFNIMNMLGVVPDTNTQDAIIMGLKRIAAFQESH  861 (1211)
Q Consensus       782 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~  861 (1211)
                      .-.|+.-.|..-++.+++....+ ...|..+..+|....+-++-...|+.+...+ +.++.+|..-+.++.-.+++++|+
T Consensus       337 fL~g~~~~a~~d~~~~I~l~~~~-~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A~  414 (606)
T KOG0547|consen  337 FLKGDSLGAQEDFDAAIKLDPAF-NSLYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEAI  414 (606)
T ss_pred             hhcCCchhhhhhHHHHHhcCccc-chHHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHHH
Confidence            44678888888888888753222 2237777778888888888888888887654 345778888888888888899999


Q ss_pred             HHHHHHHHcCCCCCh-hHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 000951          862 FVLRGMAEKGLTPKC-TQYITLINGMCRVGNFQGAFKLKDEMEALGISSSDVAESAMVRGLAHCGKVEEAMLVLNRMLRM  940 (1211)
Q Consensus       862 ~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~  940 (1211)
                      .-|++.+.  ++|.. ..|..++-+..+.++++++...|+.+.+. +|..++.|+..+.++...++++.|.+.|+.++++
T Consensus       415 aDF~Kai~--L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~L  491 (606)
T KOG0547|consen  415 ADFQKAIS--LDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIEL  491 (606)
T ss_pred             HHHHHHhh--cChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhh
Confidence            99998888  88865 77888888888888899999999888866 7888888888888888888899999999988887


Q ss_pred             Ccc-------cCHHHHHHHHHHhhhhCCHHHHHHHHHHHHhcCCCCchH-HHHHHHHHHHhCCChhHHHHHHHHHHH
Q 000951          941 RLV-------PTIATFTTLIHKFCKEAKFVDALKLKGTMELSGVKLDVV-SYNVLISGLCANGDVMPAFELYEEMKH 1009 (1211)
Q Consensus       941 ~~~-------p~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~ 1009 (1211)
                      .+.       +.+.+.-.++..-++ +++.+|+.+++..  ..++|... +|.+|+..-.+.|+.++|+++|++...
T Consensus       492 E~~~~~~~v~~~plV~Ka~l~~qwk-~d~~~a~~Ll~KA--~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~  565 (606)
T KOG0547|consen  492 EPREHLIIVNAAPLVHKALLVLQWK-EDINQAENLLRKA--IELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQ  565 (606)
T ss_pred             ccccccccccchhhhhhhHhhhchh-hhHHHHHHHHHHH--HccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            654       123333334333344 8888888886644  44478655 788888888888889999988887643

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.70  E-value=6e-14  Score=145.99  Aligned_cols=453  Identities=13%  Similarity=0.081  Sum_probs=284.0

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH-HHHHHHHHcCCCHHHHHHHHHHhhhCCCCcc----HHHHHHHHHHH
Q 000951          531 MIDGYGTLGDGLKAFSMFDEMVKLGHHPSIFTY-GSLLKGLCKGGNLKEAKRFLNSLHHIPSAVD----TVAYNTILAET  605 (1211)
Q Consensus       531 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~-~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~li~~~  605 (1211)
                      |.+.|.....+.+|+..|+-+++....|+...+ ..+.+.+.+..++..|.++++-.+..-+..+    ..+.+.+...+
T Consensus       207 laqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtf  286 (840)
T KOG2003|consen  207 LAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTF  286 (840)
T ss_pred             HHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeE
Confidence            344455555556666666666655555554322 1223344555566666666666555433332    34555566667


Q ss_pred             HHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCCHH--------HHHHHHHHHH
Q 000951          606 CKSGNLWEAIVLLDEMVQFNLLPDRYTYTILLAGLCRKGKVVSALLFFEKVVSKRTFSPNNV--------MFTCLVDGLF  677 (1211)
Q Consensus       606 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~--------~~~~l~~~~~  677 (1211)
                      .+.|.+++|+..|+...+.  .|+..+-..|+-++..-|+-++-.+.|.+++.-. ..||..        .-..|+.--.
T Consensus       287 iq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip-~~~dddkyi~~~ddp~~~ll~eai  363 (840)
T KOG2003|consen  287 IQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIP-GEIDDDKYIKEKDDPDDNLLNEAI  363 (840)
T ss_pred             EecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCC-CCCCcccccCCcCCcchHHHHHHH
Confidence            7888888888888887774  4777775555555666788888888888887643 122211        1111221111


Q ss_pred             HcC-----------CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHH
Q 000951          678 KAG-----------QSKAAMHISKIMDKEGVYPDTIAFNAVMDGFSRMGNMMMANDLLSTMRSRKLCP-SLATYNILLHG  745 (1211)
Q Consensus       678 ~~g-----------~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~  745 (1211)
                      +..           +-++++-.-..++.--+.|+...      +|      +-..+.+..-.   ..| -...-..-..-
T Consensus       364 ~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~------g~------dwcle~lk~s~---~~~la~dlei~ka~~  428 (840)
T KOG2003|consen  364 KNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAA------GC------DWCLESLKASQ---HAELAIDLEINKAGE  428 (840)
T ss_pred             hhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhc------cc------HHHHHHHHHhh---hhhhhhhhhhhHHHH
Confidence            111           11112111112222112222110      00      00111111110   001 00001112345


Q ss_pred             HHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh--cCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCcHH
Q 000951          746 YSKKKDLLMCSMLLNTMKMEGLLPDKLTCHSLILGFCE--TGMLEVGFKFLKKMIAEGTMVDCFTFNVLMRKCCEAGEMG  823 (1211)
Q Consensus       746 ~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~--~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~  823 (1211)
                      |.++|+++.|+++++-.....-+.-..+-+.|.-.+.-  ..++..|.++-+.++... .-+......-++.-...|+++
T Consensus       429 ~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~d  507 (840)
T KOG2003|consen  429 LLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDLD  507 (840)
T ss_pred             HHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcHH
Confidence            78899999999999887765333323333334333322  456788888888776531 123334444445556779999


Q ss_pred             HHHHHHHHHHHCCCCCChhhHHHHHHHHHhhcchhhHHHHHHHHHHcCCCC-ChhHHHHHHHHHHhcCChhhHHHHHHHH
Q 000951          824 KAFDLFNIMNMLGVVPDTNTQDAIIMGLKRIAAFQESHFVLRGMAEKGLTP-KCTQYITLINGMCRVGNFQGAFKLKDEM  902 (1211)
Q Consensus       824 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~eA~~~~~~~  902 (1211)
                      +|.+.|++++..+ ..-+....+++-.+...|+.++|+..|-++..  +-- +...+..+++.|....+..+|++++-++
T Consensus       508 ka~~~ykeal~nd-asc~ealfniglt~e~~~~ldeald~f~klh~--il~nn~evl~qianiye~led~aqaie~~~q~  584 (840)
T KOG2003|consen  508 KAAEFYKEALNND-ASCTEALFNIGLTAEALGNLDEALDCFLKLHA--ILLNNAEVLVQIANIYELLEDPAQAIELLMQA  584 (840)
T ss_pred             HHHHHHHHHHcCc-hHHHHHHHHhcccHHHhcCHHHHHHHHHHHHH--HHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHh
Confidence            9999999998532 12245566677778899999999999988664  433 3477889999999999999999999988


Q ss_pred             HHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCcccCHHHHHHHHHHhhhhCCHHHHHHHHHHHHhcCCCCchH
Q 000951          903 EALGISSSDVAESAMVRGLAHCGKVEEAMLVLNRMLRMRLVPTIATFTTLIHKFCKEAKFVDALKLKGTMELSGVKLDVV  982 (1211)
Q Consensus       903 ~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~p~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~  982 (1211)
                      ... ++.|+.++..|++.|.+.|+...|.+.+-...+.-|. |..+...|+.-|..-.-++.|+..|+....  +.|+..
T Consensus       585 ~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~-nie~iewl~ayyidtqf~ekai~y~ekaal--iqp~~~  660 (840)
T KOG2003|consen  585 NSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPC-NIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQPNQS  660 (840)
T ss_pred             ccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCc-chHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCccHH
Confidence            766 7889999999999999999999999887766665444 888888899999999999999999886554  489988


Q ss_pred             HHHHHHH-HHHhCCChhHHHHHHHHHHH
Q 000951          983 SYNVLIS-GLCANGDVMPAFELYEEMKH 1009 (1211)
Q Consensus       983 ~~~~l~~-~~~~~g~~~~a~~~~~~~~~ 1009 (1211)
                      -|..++. ++.+.|.+..|...|+..-.
T Consensus       661 kwqlmiasc~rrsgnyqka~d~yk~~hr  688 (840)
T KOG2003|consen  661 KWQLMIASCFRRSGNYQKAFDLYKDIHR  688 (840)
T ss_pred             HHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence            8865555 77789999999999988743

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.70  E-value=1.6e-13  Score=145.28  Aligned_cols=225  Identities=13%  Similarity=0.010  Sum_probs=183.2

Q ss_pred             HHHHHccCChHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCc
Q 000951          743 LHGYSKKKDLLMCSMLLNTMKMEGLLPDKLT-CHSLILGFCETGMLEVGFKFLKKMIAEGTMVDCFTFNVLMRKCCEAGE  821 (1211)
Q Consensus       743 ~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~  821 (1211)
                      +.-+.-.|++-.|.+-|+..++  +.|.... |..+..+|....+.++..+.|+++...+ +.++.+|...++++.-.++
T Consensus       333 gtF~fL~g~~~~a~~d~~~~I~--l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q  409 (606)
T KOG0547|consen  333 GTFHFLKGDSLGAQEDFDAAIK--LDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQ  409 (606)
T ss_pred             hhhhhhcCCchhhhhhHHHHHh--cCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHH
Confidence            3345668999999999999998  4553333 7778889999999999999999998853 2357789999999999999


Q ss_pred             HHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhcchhhHHHHHHHHHHcCCCCC-hhHHHHHHHHHHhcCChhhHHHHHH
Q 000951          822 MGKAFDLFNIMNMLGVVPDTNTQDAIIMGLKRIAAFQESHFVLRGMAEKGLTPK-CTQYITLINGMCRVGNFQGAFKLKD  900 (1211)
Q Consensus       822 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~eA~~~~~  900 (1211)
                      +++|..-|++.+... +.+...|-.+.-+..+.++++++...|++..+  .-|+ ++.|+..+.++..++++++|.+.|+
T Consensus       410 ~e~A~aDF~Kai~L~-pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kk--kFP~~~Evy~~fAeiLtDqqqFd~A~k~YD  486 (606)
T KOG0547|consen  410 YEEAIADFQKAISLD-PENAYAYIQLCCALYRQHKIAESMKTFEEAKK--KFPNCPEVYNLFAEILTDQQQFDKAVKQYD  486 (606)
T ss_pred             HHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hCCCCchHHHHHHHHHhhHHhHHHHHHHHH
Confidence            999999999998743 22467788888888899999999999999998  6776 4889999999999999999999999


Q ss_pred             HHHHcCCC-------CchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCcccCHHHHHHHHHHhhhhCCHHHHHHHHHHHH
Q 000951          901 EMEALGIS-------SSDVAESAMVRGLAHCGKVEEAMLVLNRMLRMRLVPTIATFTTLIHKFCKEAKFVDALKLKGTME  973 (1211)
Q Consensus       901 ~~~~~~~~-------~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~p~~~~~~~L~~~~~~~g~~~~A~~~~~~~~  973 (1211)
                      .+++....       +.+.+...++....+ +++.+|.++++++++.+|. ...++.+|+......|+.++|+++|+...
T Consensus       487 ~ai~LE~~~~~~~v~~~plV~Ka~l~~qwk-~d~~~a~~Ll~KA~e~Dpk-ce~A~~tlaq~~lQ~~~i~eAielFEksa  564 (606)
T KOG0547|consen  487 KAIELEPREHLIIVNAAPLVHKALLVLQWK-EDINQAENLLRKAIELDPK-CEQAYETLAQFELQRGKIDEAIELFEKSA  564 (606)
T ss_pred             HHHhhccccccccccchhhhhhhHhhhchh-hhHHHHHHHHHHHHccCch-HHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            99865322       112222333333333 8899999999999999877 77899999999999999999999998665


Q ss_pred             hc
Q 000951          974 LS  975 (1211)
Q Consensus       974 ~~  975 (1211)
                      .+
T Consensus       565 ~l  566 (606)
T KOG0547|consen  565 QL  566 (606)
T ss_pred             HH
Confidence            44

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.68  E-value=4.8e-13  Score=144.81  Aligned_cols=281  Identities=10%  Similarity=-0.001  Sum_probs=213.6

Q ss_pred             CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCC-CHHHHH
Q 000951          697 VYPDTIAFNAVMDGFSRMGNMMMANDLLSTMRSRKLCPSLATYNILLHGYSKKKDLLMCSMLLNTMKMEGLLP-DKLTCH  775 (1211)
Q Consensus       697 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~  775 (1211)
                      ...+........+-+...+++.+..++++.+.+. .++....+..-+.++.+.|+..+-..+-.++.+  ..| ...+|.
T Consensus       240 l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~-dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~--~yP~~a~sW~  316 (611)
T KOG1173|consen  240 LAENLDLLAEKADRLYYGCRFKECLKITEELLEK-DPFHLPCLPLHIACLYELGKSNKLFLLSHKLVD--LYPSKALSWF  316 (611)
T ss_pred             hhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhh-CCCCcchHHHHHHHHHHhcccchHHHHHHHHHH--hCCCCCcchh
Confidence            3556666677777888889999999999998864 233555555556688888888888878788887  455 567898


Q ss_pred             HHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HhhHHHHHHHHHhcCcHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhh
Q 000951          776 SLILGFCETGMLEVGFKFLKKMIAEGTMVD-CFTFNVLMRKCCEAGEMGKAFDLFNIMNMLGVVPDTNTQDAIIMGLKRI  854 (1211)
Q Consensus       776 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  854 (1211)
                      +++--|.-.|++++|.++|.++..  +.|. ...|-.++..|.-.|+.++|...|..+.+.- +....-+..++.-|.+.
T Consensus       317 aVg~YYl~i~k~seARry~SKat~--lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~-~G~hlP~LYlgmey~~t  393 (611)
T KOG1173|consen  317 AVGCYYLMIGKYSEARRYFSKATT--LDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLM-PGCHLPSLYLGMEYMRT  393 (611)
T ss_pred             hHHHHHHHhcCcHHHHHHHHHHhh--cCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhc-cCCcchHHHHHHHHHHh
Confidence            888888888999999999999876  4444 4578888899999999999999888876521 22233455567778888


Q ss_pred             cchhhHHHHHHHHHHcCCCC-ChhHHHHHHHHHHhcCChhhHHHHHHHHHHc----CCCC--chHHHHHHHHHHHhcCCH
Q 000951          855 AAFQESHFVLRGMAEKGLTP-KCTQYITLINGMCRVGNFQGAFKLKDEMEAL----GISS--SDVAESAMVRGLAHCGKV  927 (1211)
Q Consensus       855 g~~~eA~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~----~~~~--~~~~~~~l~~~~~~~g~~  927 (1211)
                      ++.+-|...|.++..  +.| |+..+..++-...+.+.+.+|..+|+.+++.    +.+.  -...++.+|+++.+.+++
T Consensus       394 ~n~kLAe~Ff~~A~a--i~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~  471 (611)
T KOG1173|consen  394 NNLKLAEKFFKQALA--IAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKY  471 (611)
T ss_pred             ccHHHHHHHHHHHHh--cCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhH
Confidence            899999999998887  888 4577778888888888999999999888622    1111  123577888899999999


Q ss_pred             HHHHHHHHHHHhCCcccCHHHHHHHHHHhhhhCCHHHHHHHHHHHHhcCCCCchHHHHHHH
Q 000951          928 EEAMLVLNRMLRMRLVPTIATFTTLIHKFCKEAKFVDALKLKGTMELSGVKLDVVSYNVLI  988 (1211)
Q Consensus       928 ~eA~~~~~~~~~~~~~p~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~  988 (1211)
                      ++|+..|++++.+.+. +..++.++|.+|...|+++.|++.|...  +.+.|+...-..++
T Consensus       472 ~eAI~~~q~aL~l~~k-~~~~~asig~iy~llgnld~Aid~fhKa--L~l~p~n~~~~~lL  529 (611)
T KOG1173|consen  472 EEAIDYYQKALLLSPK-DASTHASIGYIYHLLGNLDKAIDHFHKA--LALKPDNIFISELL  529 (611)
T ss_pred             HHHHHHHHHHHHcCCC-chhHHHHHHHHHHHhcChHHHHHHHHHH--HhcCCccHHHHHHH
Confidence            9999999999888777 8888888999999999999999987744  45588775443333

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.68  E-value=6.3e-12  Score=132.67  Aligned_cols=385  Identities=12%  Similarity=0.036  Sum_probs=267.4

Q ss_pred             CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCccH-HHH
Q 000951          520 GVVPNSITFDCMIDGYGTLGDGLKAFSMFDEMVKLGHHPSIFTYGSLLKGLCKGGNLKEAKRFLNSLHHIPSAVDT-VAY  598 (1211)
Q Consensus       520 g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~  598 (1211)
                      +...|...+-...-.+.+.|....|+..|...+.. .+-.-..|..|...+   .+.+.+    ..+....+..+. ..-
T Consensus       159 ~~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~-~P~~W~AWleL~~li---t~~e~~----~~l~~~l~~~~h~M~~  230 (559)
T KOG1155|consen  159 GGEKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNR-YPWFWSAWLELSELI---TDIEIL----SILVVGLPSDMHWMKK  230 (559)
T ss_pred             cccchhHHHHHHHHHHHhhchHHHHHHHHHHHHhc-CCcchHHHHHHHHhh---chHHHH----HHHHhcCcccchHHHH
Confidence            33456555555566677888999999999888753 222333444333322   222222    222211221111 111


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC-CHHHHHHHHHHHH
Q 000951          599 NTILAETCKSGNLWEAIVLLDEMVQFNLLPDRYTYTILLAGLCRKGKVVSALLFFEKVVSKRTFSP-NNVMFTCLVDGLF  677 (1211)
Q Consensus       599 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~  677 (1211)
                      --+..++......+++++-.+.....|++.+...-+-...+.....++++|+..|+++.+..+..- |..+|..++-  .
T Consensus       231 ~F~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LY--v  308 (559)
T KOG1155|consen  231 FFLKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLY--V  308 (559)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHH--H
Confidence            234445556668888998888888888765555555555566778999999999999998753332 3567776653  3


Q ss_pred             HcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCChHHHH
Q 000951          678 KAGQSKAAMHISKIMDKEGVYPDTIAFNAVMDGFSRMGNMMMANDLLSTMRSRKLCP-SLATYNILLHGYSKKKDLLMCS  756 (1211)
Q Consensus       678 ~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~  756 (1211)
                      ++.+-.  +..+.+-.-.--+-.+.|...+..-|+-.++.++|...|++..+  ++| ....|..++.-|+..++...|+
T Consensus       309 ~~~~sk--Ls~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALk--LNp~~~~aWTLmGHEyvEmKNt~AAi  384 (559)
T KOG1155|consen  309 KNDKSK--LSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALK--LNPKYLSAWTLMGHEYVEMKNTHAAI  384 (559)
T ss_pred             HhhhHH--HHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHh--cCcchhHHHHHhhHHHHHhcccHHHH
Confidence            332222  22222211111133456777788888889999999999999995  577 5788999999999999999999


Q ss_pred             HHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHHHHHC
Q 000951          757 MLLNTMKMEGLLP-DKLTCHSLILGFCETGMLEVGFKFLKKMIAEGTMVDCFTFNVLMRKCCEAGEMGKAFDLFNIMNML  835 (1211)
Q Consensus       757 ~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  835 (1211)
                      +.|+.+++  +.| |-.+|..|+++|.-.+...-|+-+|+++.+- -+.|...|.+|+++|.+.++.++|++.|+++...
T Consensus       385 ~sYRrAvd--i~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~-kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~  461 (559)
T KOG1155|consen  385 ESYRRAVD--INPRDYRAWYGLGQAYEIMKMHFYALYYFQKALEL-KPNDSRLWVALGECYEKLNRLEEAIKCYKRAILL  461 (559)
T ss_pred             HHHHHHHh--cCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhc-CCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhc
Confidence            99999999  677 8889999999999999999999999999984 3447899999999999999999999999999875


Q ss_pred             CCCCChhhHHHHHHHHHhhcchhhHHHHHHHHHHc----C-CCCCh-hHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCC
Q 000951          836 GVVPDTNTQDAIIMGLKRIAAFQESHFVLRGMAEK----G-LTPKC-TQYITLINGMCRVGNFQGAFKLKDEMEALGISS  909 (1211)
Q Consensus       836 ~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~----g-~~p~~-~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~  909 (1211)
                      + ..+...+..|+..|.+.++.++|...|.+-++.    | +.|.. .+...|+.-+.+.+++++|..+-......    
T Consensus       462 ~-dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~----  536 (559)
T KOG1155|consen  462 G-DTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKG----  536 (559)
T ss_pred             c-ccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcC----
Confidence            4 235578899999999999999999999987762    2 33322 44445677777778877777664444321    


Q ss_pred             chHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 000951          910 SDVAESAMVRGLAHCGKVEEAMLVLNRMLRM  940 (1211)
Q Consensus       910 ~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~  940 (1211)
                                    ....+||..+++++...
T Consensus       537 --------------~~e~eeak~LlReir~~  553 (559)
T KOG1155|consen  537 --------------ETECEEAKALLREIRKI  553 (559)
T ss_pred             --------------CchHHHHHHHHHHHHHh
Confidence                          22366777777666543

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=99.67  E-value=2.8e-11  Score=136.15  Aligned_cols=429  Identities=12%  Similarity=-0.030  Sum_probs=239.6

Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCc-cHHHHHHHH
Q 000951          524 NSITFDCMIDGYGTLGDGLKAFSMFDEMVKLGHHPSIFTYGSLLKGLCKGGNLKEAKRFLNSLHHIPSAV-DTVAYNTIL  602 (1211)
Q Consensus       524 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~li  602 (1211)
                      |...|..+.-+....|+++.+.+.|++.... .......|..+...+...|.-..|..+++......+.| |+..+....
T Consensus       322 d~ai~d~Lt~al~~~g~f~~lae~fE~~~~~-~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lmas  400 (799)
T KOG4162|consen  322 DAAIFDHLTFALSRCGQFEVLAEQFEQALPF-SFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMAS  400 (799)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh-hhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHHH
Confidence            4444444545555555555555555554432 22233444455555555555555555555444433222 222222222


Q ss_pred             HHHH-HcCCHHHHHHHHHHHHhC--CC--CCCHHHHHHHHHHHHh----C-------CChHHHHHHHHHHHHcCCCCCCH
Q 000951          603 AETC-KSGNLWEAIVLLDEMVQF--NL--LPDRYTYTILLAGLCR----K-------GKVVSALLFFEKVVSKRTFSPNN  666 (1211)
Q Consensus       603 ~~~~-~~g~~~~A~~~~~~m~~~--~~--~p~~~~~~~li~~~~~----~-------g~~~~A~~~~~~~~~~~~~~p~~  666 (1211)
                      ..|. +-+..+++++.-.+++..  +.  .-....+..+.-+|..    .       -...++++.++++++.++..|+.
T Consensus       401 klc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~dp~~  480 (799)
T KOG4162|consen  401 KLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTDPLV  480 (799)
T ss_pred             HHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCCchH
Confidence            2222 234455555444444431  00  0112223333333321    1       12356788888888877666666


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 000951          667 VMFTCLVDGLFKAGQSKAAMHISKIMDKEGVYPDTIAFNAVMDGFSRMGNMMMANDLLSTMRSRKLCPSLATYNILLHGY  746 (1211)
Q Consensus       667 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~  746 (1211)
                      ..|.++  -|+..++.+.|.+..++.++.+-..+...|..|.-.+...+++.+|+.+.+...+. ...|......-+..-
T Consensus       481 if~lal--q~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E-~~~N~~l~~~~~~i~  557 (799)
T KOG4162|consen  481 IFYLAL--QYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEE-FGDNHVLMDGKIHIE  557 (799)
T ss_pred             HHHHHH--HHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH-hhhhhhhchhhhhhh
Confidence            666554  46677889999999999988866778888988888888899999999998887753 111222222222333


Q ss_pred             HccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc--CCCCCHhhHHHHHHHHHhcC---c
Q 000951          747 SKKKDLLMCSMLLNTMKMEGLLPDKLTCHSLILGFCETGMLEVGFKFLKKMIAE--GTMVDCFTFNVLMRKCCEAG---E  821 (1211)
Q Consensus       747 ~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g---~  821 (1211)
                      ..-++.++|+.....++..  --+.....       ..++-....+....+.-.  .......++..+.......+   .
T Consensus       558 ~~~~~~e~~l~t~~~~L~~--we~~~~~q-------~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~  628 (799)
T KOG4162|consen  558 LTFNDREEALDTCIHKLAL--WEAEYGVQ-------QTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAG  628 (799)
T ss_pred             hhcccHHHHHHHHHHHHHH--HHhhhhHh-------hhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcc
Confidence            4467788888777776651  10111111       111111112222211111  00011222222222111111   1


Q ss_pred             HHHHHHHHHHHHHCCCCC--C------hhhHHHHHHHHHhhcchhhHHHHHHHHHHcCCCCC-hhHHHHHHHHHHhcCCh
Q 000951          822 MGKAFDLFNIMNMLGVVP--D------TNTQDAIIMGLKRIAAFQESHFVLRGMAEKGLTPK-CTQYITLINGMCRVGNF  892 (1211)
Q Consensus       822 ~~~A~~~~~~~~~~~~~~--~------~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~  892 (1211)
                      .+..      +....+.|  +      ...|...+..+...++.++|...+.++..  +.|- ...|...+..+...|++
T Consensus       629 se~~------Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~--~~~l~~~~~~~~G~~~~~~~~~  700 (799)
T KOG4162|consen  629 SELK------LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASK--IDPLSASVYYLRGLLLEVKGQL  700 (799)
T ss_pred             cccc------cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHh--cchhhHHHHHHhhHHHHHHHhh
Confidence            1111      11111122  2      22455666677777888888877777776  6664 36677777788888888


Q ss_pred             hhHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHH--HHHHHHhCCcccCHHHHHHHHHHhhhhCCHHHHHHHHH
Q 000951          893 QGAFKLKDEMEALGISSSDVAESAMVRGLAHCGKVEEAML--VLNRMLRMRLVPTIATFTTLIHKFCKEAKFVDALKLKG  970 (1211)
Q Consensus       893 ~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~--~~~~~~~~~~~p~~~~~~~L~~~~~~~g~~~~A~~~~~  970 (1211)
                      +||.+.|..+...+ |.+..+..+++.++.+.|+..-|.+  ++..+++.+|. +...|..||.++.+.|+.++|.+.|.
T Consensus       701 ~EA~~af~~Al~ld-P~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~-n~eaW~~LG~v~k~~Gd~~~Aaecf~  778 (799)
T KOG4162|consen  701 EEAKEAFLVALALD-PDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPL-NHEAWYYLGEVFKKLGDSKQAAECFQ  778 (799)
T ss_pred             HHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHccchHHHHHHHH
Confidence            88888888887663 5566677788888888887665655  88888887766 88888888888888888888888887


Q ss_pred             HHHhc
Q 000951          971 TMELS  975 (1211)
Q Consensus       971 ~~~~~  975 (1211)
                      ....+
T Consensus       779 aa~qL  783 (799)
T KOG4162|consen  779 AALQL  783 (799)
T ss_pred             HHHhh
Confidence            66555

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.67  E-value=4.6e-11  Score=126.13  Aligned_cols=438  Identities=11%  Similarity=0.035  Sum_probs=288.3

Q ss_pred             HcCCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHH
Q 000951          501 CKGGKVCEAEDYVGHMKRIGVVPNSITFDCMIDGYGTLGDGLKAFSMFDEMVKLGHHPSIFTYGSLLKGLCKGGNLKEAK  580 (1211)
Q Consensus       501 ~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~  580 (1211)
                      ...+++..|..+|+..+... ..+...|...+.+=.++.+...|..++++.+..=...| ..+--.+.+=-..|++..|.
T Consensus        84 esq~e~~RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVd-qlWyKY~ymEE~LgNi~gaR  161 (677)
T KOG1915|consen   84 ESQKEIQRARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVD-QLWYKYIYMEEMLGNIAGAR  161 (677)
T ss_pred             HhHHHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHH-HHHHHHHHHHHHhcccHHHH
Confidence            33445555555555555433 23445555555555556666666666666554311111 22222333334456666777


Q ss_pred             HHHHHhhhCCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcC
Q 000951          581 RFLNSLHHIPSAVDTVAYNTILAETCKSGNLWEAIVLLDEMVQFNLLPDRYTYTILLAGLCRKGKVVSALLFFEKVVSKR  660 (1211)
Q Consensus       581 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~  660 (1211)
                      ++|++..+..  |+...|++.|..-.+...++.|..+|++..-  +.|++.+|.-....-.++|...-|..+|+.+++.-
T Consensus       162 qiferW~~w~--P~eqaW~sfI~fElRykeieraR~IYerfV~--~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~  237 (677)
T KOG1915|consen  162 QIFERWMEWE--PDEQAWLSFIKFELRYKEIERARSIYERFVL--VHPKVSNWIKYARFEEKHGNVALARSVYERAIEFL  237 (677)
T ss_pred             HHHHHHHcCC--CcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe--ecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh
Confidence            7776665543  4666777777777777777777777777664  34777777766666667777777777777776632


Q ss_pred             CCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCh---HHHHHH-----HHHH
Q 000951          661 TFSPN---NVMFTCLVDGLFKAGQSKAAMHISKIMDKEGVYPD--TIAFNAVMDGFSRMGNM---MMANDL-----LSTM  727 (1211)
Q Consensus       661 ~~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~--~~~~~~li~~~~~~g~~---~~A~~~-----~~~~  727 (1211)
                        ..+   ...+.+....-..++.++.|.-+|+.+++.- +.+  ...|.....-=-+-|+.   ++++--     ++.+
T Consensus       238 --~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~-pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~  314 (677)
T KOG1915|consen  238 --GDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHI-PKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKE  314 (677)
T ss_pred             --hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHH
Confidence              111   2234444444455677777888887776652 222  23333333222233443   333322     3344


Q ss_pred             HHCCCCC-CHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCH--HHHHHH--------HHHHHhcCChHHHHHHHHH
Q 000951          728 RSRKLCP-SLATYNILLHGYSKKKDLLMCSMLLNTMKMEGLLPDK--LTCHSL--------ILGFCETGMLEVGFKFLKK  796 (1211)
Q Consensus       728 ~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~--~~~~~l--------~~~~~~~g~~~~A~~~~~~  796 (1211)
                      .+.  +| |..+|...+..-...|+.+...++|.+++.+ +.|-.  ..|.-.        +-.-....+.+.+.++|+.
T Consensus       315 v~~--np~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~  391 (677)
T KOG1915|consen  315 VSK--NPYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQA  391 (677)
T ss_pred             HHh--CCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence            433  45 8889999998888899999999999999975 56622  222211        1112356889999999999


Q ss_pred             HHHcCCCCCHhhHHHHHHH----HHhcCcHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhcchhhHHHHHHHHHHcCC
Q 000951          797 MIAEGTMVDCFTFNVLMRK----CCEAGEMGKAFDLFNIMNMLGVVPDTNTQDAIIMGLKRIAAFQESHFVLRGMAEKGL  872 (1211)
Q Consensus       797 ~~~~~~~~~~~~~~~l~~~----~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~g~  872 (1211)
                      .++. ++...+++..+=-+    -.++.++..|.+++-.++  |.-|..-++...+..=.+.++++....+|++.++  .
T Consensus       392 ~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL~efDRcRkLYEkfle--~  466 (677)
T KOG1915|consen  392 CLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKGYIELELQLREFDRCRKLYEKFLE--F  466 (677)
T ss_pred             HHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHh--c
Confidence            9983 44445555544333    446789999999998887  4567788888888888899999999999999999  8


Q ss_pred             CCC-hhHHHHHHHHHHhcCChhhHHHHHHHHHHcCCC-CchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCcccCHHHHH
Q 000951          873 TPK-CTQYITLINGMCRVGNFQGAFKLKDEMEALGIS-SSDVAESAMVRGLAHCGKVEEAMLVLNRMLRMRLVPTIATFT  950 (1211)
Q Consensus       873 ~p~-~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~p~~~~~~  950 (1211)
                      .|. ..+|...+..-...|+++.|..+|+-+++...- .....|...++.-...|.+++|..+|++.++..  +...+|.
T Consensus       467 ~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt--~h~kvWi  544 (677)
T KOG1915|consen  467 SPENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRT--QHVKVWI  544 (677)
T ss_pred             ChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhc--ccchHHH
Confidence            885 488999999889999999999999999865432 234467788888888999999999999999864  4667898


Q ss_pred             HHHHHhh
Q 000951          951 TLIHKFC  957 (1211)
Q Consensus       951 ~L~~~~~  957 (1211)
                      +++.--.
T Consensus       545 sFA~fe~  551 (677)
T KOG1915|consen  545 SFAKFEA  551 (677)
T ss_pred             hHHHHhc
Confidence            8776433

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=99.65  E-value=7.1e-09  Score=114.79  Aligned_cols=757  Identities=15%  Similarity=0.130  Sum_probs=375.8

Q ss_pred             HHHHHHcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCh
Q 000951          112 IRVYLREGMVEYALETFQLMGFRGFNPSVYTCNMMLSFMLKDRRVDSVWLLFDDMLDRKICPNVATFNILINVSCVEGKL  191 (1211)
Q Consensus       112 ~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~l~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~  191 (1211)
                      +-.|-...+|++|+.+-+.   .|.+.-...-.+.++++...|+-+.|-++-..   .|   |  + ...|..|.+.|.+
T Consensus       564 igmy~~lhkwde~i~lae~---~~~p~~eklk~sy~q~l~dt~qd~ka~elk~s---dg---d--~-laaiqlyika~~p  631 (1636)
T KOG3616|consen  564 IGMYQELHKWDEAIALAEA---KGHPALEKLKRSYLQALMDTGQDEKAAELKES---DG---D--G-LAAIQLYIKAGKP  631 (1636)
T ss_pred             HHHHHHHHhHHHHHHHHHh---cCChHHHHHHHHHHHHHHhcCchhhhhhhccc---cC---c--c-HHHHHHHHHcCCc
Confidence            3344455555555554432   23333334455667777777777666544221   11   1  1 2456677777777


Q ss_pred             hHHHHHHHHHHHcCCCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 000951          192 KKAGYLLRKMEESGYVPNIVTYNTLLNWYCKKGRYKAAFKLIDCMASKGIEADVCTYNMFIDDLCRNNRSAKGYLLLKNM  271 (1211)
Q Consensus       192 ~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m  271 (1211)
                      ..|......-.  .+..|......+..++.+..-+++|-.+|+++..    |     ...+..+-+-.-+-+|.++-+-.
T Consensus       632 ~~a~~~a~n~~--~l~~de~il~~ia~alik~elydkagdlfeki~d----~-----dkale~fkkgdaf~kaielarfa  700 (1636)
T KOG3616|consen  632 AKAARAALNDE--ELLADEEILEHIAAALIKGELYDKAGDLFEKIHD----F-----DKALECFKKGDAFGKAIELARFA  700 (1636)
T ss_pred             hHHHHhhcCHH--HhhccHHHHHHHHHHHHhhHHHHhhhhHHHHhhC----H-----HHHHHHHHcccHHHHHHHHHHhh
Confidence            76654332111  1123444445555666666666777777766642    1     11122222222234444433322


Q ss_pred             HHCCCCCCHHHH-HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCH
Q 000951          272 RKRMITPNEVTY-NTLINGFVKEGKIQVASRVFDEMSMLNFSPNSITYNELIDGHCCKGNFKEAFRLLAMMEEMGLRPNE  350 (1211)
Q Consensus       272 ~~~~~~p~~~~~-~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~  350 (1211)
                          ++..+++. .....-+...|+++.|..-|-+...         ...-|.+-.....+.+|+.+++.+....  .-.
T Consensus       701 ----fp~evv~lee~wg~hl~~~~q~daainhfiea~~---------~~kaieaai~akew~kai~ildniqdqk--~~s  765 (1636)
T KOG3616|consen  701 ----FPEEVVKLEEAWGDHLEQIGQLDAAINHFIEANC---------LIKAIEAAIGAKEWKKAISILDNIQDQK--TAS  765 (1636)
T ss_pred             ----CcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhhh---------HHHHHHHHhhhhhhhhhHhHHHHhhhhc--ccc
Confidence                11112221 1223445566777777777655421         2233555667788888888888877653  223


Q ss_pred             hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHH
Q 000951          351 VSYGALLNGFCKHAKFDLARSLLERMRTNGISISCIAYTSVIDGLCKCGLLDEAMQLFNKMFKDGLNPDLITFSVLINGF  430 (1211)
Q Consensus       351 ~t~~~ll~~~~~~g~~~~a~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~  430 (1211)
                      --|..+..-|+..|+++.|.++|.+.   +      .++--|++|.+.|++++|.++-++..  |.......|-+-..-+
T Consensus       766 ~yy~~iadhyan~~dfe~ae~lf~e~---~------~~~dai~my~k~~kw~da~kla~e~~--~~e~t~~~yiakaedl  834 (1636)
T KOG3616|consen  766 GYYGEIADHYANKGDFEIAEELFTEA---D------LFKDAIDMYGKAGKWEDAFKLAEECH--GPEATISLYIAKAEDL  834 (1636)
T ss_pred             ccchHHHHHhccchhHHHHHHHHHhc---c------hhHHHHHHHhccccHHHHHHHHHHhc--CchhHHHHHHHhHHhH
Confidence            34677778888899999998887543   2      35567888999999999988877764  3344566677767777


Q ss_pred             HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHH
Q 000951          431 CKVGMTRKAKAVLCKMYRDGLVPNKIIYSTLIYYFCKMGKVTEAMKVYAVMNRNAQGSDHFTCNMLVASLCKGGKVCEAE  510 (1211)
Q Consensus       431 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~  510 (1211)
                      -+.|++.+|.+++-..   | .|+.     .|.+|-+.|..++.+++.+.-.   ...-..+..-+..-|-..|++..|+
T Consensus       835 dehgkf~eaeqlyiti---~-~p~~-----aiqmydk~~~~ddmirlv~k~h---~d~l~dt~~~f~~e~e~~g~lkaae  902 (1636)
T KOG3616|consen  835 DEHGKFAEAEQLYITI---G-EPDK-----AIQMYDKHGLDDDMIRLVEKHH---GDHLHDTHKHFAKELEAEGDLKAAE  902 (1636)
T ss_pred             HhhcchhhhhheeEEc---c-CchH-----HHHHHHhhCcchHHHHHHHHhC---hhhhhHHHHHHHHHHHhccChhHHH
Confidence            7888888888877433   2 3443     3567778888887777655431   1112234555666777788888888


Q ss_pred             HHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCC
Q 000951          511 DYVGHMKRIGVVPNSITFDCMIDGYGTLGDGLKAFSMFDEMVKLGHHPSIFTYGSLLKGLCKGGNLKEAKRFLNSLHHIP  590 (1211)
Q Consensus       511 ~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~  590 (1211)
                      ..|-+..+         |.+-++.|...+.+++|..+-+.   .| ..+..-....  .+++.=--+.|.++++..    
T Consensus       903 ~~flea~d---------~kaavnmyk~s~lw~dayriakt---eg-g~n~~k~v~f--lwaksiggdaavkllnk~----  963 (1636)
T KOG3616|consen  903 EHFLEAGD---------FKAAVNMYKASELWEDAYRIAKT---EG-GANAEKHVAF--LWAKSIGGDAAVKLLNKH----  963 (1636)
T ss_pred             HHHHhhhh---------HHHHHHHhhhhhhHHHHHHHHhc---cc-cccHHHHHHH--HHHHhhCcHHHHHHHHhh----
Confidence            77755442         55666777777777777655432   12 1111111111  112211122333333221    


Q ss_pred             CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCCHHHHH
Q 000951          591 SAVDTVAYNTILAETCKSGNLWEAIVLLDEMVQFNLLPDRYTYTILLAGLCRKGKVVSALLFFEKVVSKRTFSPNNVMFT  670 (1211)
Q Consensus       591 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~  670 (1211)
                           -....-++.-+..+.++-|.++-+-..+.. .|.+.  ..+..-+-..|++++|-+.|-++++.+   .-..||.
T Consensus       964 -----gll~~~id~a~d~~afd~afdlari~~k~k-~~~vh--lk~a~~ledegk~edaskhyveaikln---tynitwc 1032 (1636)
T KOG3616|consen  964 -----GLLEAAIDFAADNCAFDFAFDLARIAAKDK-MGEVH--LKLAMFLEDEGKFEDASKHYVEAIKLN---TYNITWC 1032 (1636)
T ss_pred             -----hhHHHHhhhhhcccchhhHHHHHHHhhhcc-Cccch--hHHhhhhhhccchhhhhHhhHHHhhcc---cccchhh
Confidence                 011222333344455555555444333321 12221  112222345666666666666555532   1111111


Q ss_pred             H-------------------HHHHHHHcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 000951          671 C-------------------LVDGLFKAGQSKAAMHISKIMDKEGVYPD--TIAFNAVMDGFSRMGNMMMANDLLSTMRS  729 (1211)
Q Consensus       671 ~-------------------l~~~~~~~g~~~~A~~~~~~~~~~g~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~  729 (1211)
                      .                   -+.++.+..+|..|.++-+.-     .|+  +.++..-.......|++..|+.++-+.. 
T Consensus      1033 qavpsrfd~e~ir~gnkpe~av~mfi~dndwa~aervae~h-----~~~~l~dv~tgqar~aiee~d~~kae~fllran- 1106 (1636)
T KOG3616|consen 1033 QAVPSRFDAEFIRAGNKPEEAVEMFIHDNDWAAAERVAEAH-----CEDLLADVLTGQARGAIEEGDFLKAEGFLLRAN- 1106 (1636)
T ss_pred             hcccchhhHHHHHcCCChHHHHHHhhhcccHHHHHHHHHhh-----ChhhhHHHHhhhhhccccccchhhhhhheeecC-
Confidence            1                   112334444455554443221     121  1223333333344566666665554432 


Q ss_pred             CCCCCCHHHHHHHHHHHHccCChHHHHHHHHHH----------------HHCCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 000951          730 RKLCPSLATYNILLHGYSKKKDLLMCSMLLNTM----------------KMEGLLPDKLTCHSLILGFCETGMLEVGFKF  793 (1211)
Q Consensus       730 ~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~----------------~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~  793 (1211)
                         .|+..     ++.|...+-|.+|+++-+..                .++|.. ....+..-..-..+.|+|.+|...
T Consensus      1107 ---kp~i~-----l~yf~e~~lw~dalri~kdylp~q~a~iqeeyek~~~k~gar-gvd~fvaqak~weq~gd~rkav~~ 1177 (1636)
T KOG3616|consen 1107 ---KPDIA-----LNYFIEAELWPDALRIAKDYLPHQAAAIQEEYEKEALKKGAR-GVDGFVAQAKEWEQAGDWRKAVDA 1177 (1636)
T ss_pred             ---CCchH-----HHHHHHhccChHHHHHHHhhChhHHHHHHHHHHHHHHhcccc-ccHHHHHHHHHHHhcccHHHHHHH
Confidence               34432     23344455555555543322                122211 112233334455667777777777


Q ss_pred             HHHHHHcCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHHHHHCCCCCCh--hhHHHHHHHHHhhcchhhHHHHHHHHHHcC
Q 000951          794 LKKMIAEGTMVDCFTFNVLMRKCCEAGEMGKAFDLFNIMNMLGVVPDT--NTQDAIIMGLKRIAAFQESHFVLRGMAEKG  871 (1211)
Q Consensus       794 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~eA~~~~~~~~~~g  871 (1211)
                      +-++.+....     -..|+.-     .+++|-++--+.+    .|+.  ....+.+.++...|..+.|-+++-..-.  
T Consensus      1178 ~lkinrdst~-----nd~l~e~-----~~~kaadl~ikfl----~~d~nme~i~aa~~al~~~~~~e~aael~l~f~~-- 1241 (1636)
T KOG3616|consen 1178 LLKINRDSTD-----NDALAEH-----CTEKAADLSIKFL----MGDENMEVIGAAGGALDEAGCHEAAAELLLLFDL-- 1241 (1636)
T ss_pred             HhhhccCCCC-----cHHHHHH-----HHHHHHhhhhhhc----CCccchhhHHhcchhhhcccccHHHHHHHHHhhh--
Confidence            6665442211     1122211     1223322222211    1221  2222222333333444443333322110  


Q ss_pred             CCCChhHHHHHHHHHHhcCChhhHHHH---------------HHHHHHcCCCCchH---HHHHHHHHHHhcCCHHHHHHH
Q 000951          872 LTPKCTQYITLINGMCRVGNFQGAFKL---------------KDEMEALGISSSDV---AESAMVRGLAHCGKVEEAMLV  933 (1211)
Q Consensus       872 ~~p~~~~~~~l~~~~~~~g~~~eA~~~---------------~~~~~~~~~~~~~~---~~~~l~~~~~~~g~~~eA~~~  933 (1211)
                             -..-++++++...|.+|.++               |++.++..-..+..   -.-..++++..+++|++|++.
T Consensus      1242 -------~keaida~~~~eewakakqvake~~p~~~~~idk~yke~lknegkl~eli~vdviaaidl~ien~qwdk~idt 1314 (1636)
T KOG3616|consen 1242 -------SKEAIDAFCEAEEWAKAKQVAKELDPEMEDEIDKHYKEFLKNEGKLDELIDVDVIAAIDLMIENDQWDKAIDT 1314 (1636)
T ss_pred             -------HHHHHHHHHhHHHHHHHHHHHHHhCchhhHHHHHHHHHHHhccCccccccchhHHHHHHHHHhcccHHHHHHH
Confidence                   11223344444444444333               33332211111111   112346788899999999987


Q ss_pred             HHHHHhCCcccCHHHHHHH-HHHhhhhCCHHHHHHHHHHHHhcCCCC-chHHHHHHHH-HHHhCC-ChhHHH
Q 000951          934 LNRMLRMRLVPTIATFTTL-IHKFCKEAKFVDALKLKGTMELSGVKL-DVVSYNVLIS-GLCANG-DVMPAF 1001 (1211)
Q Consensus       934 ~~~~~~~~~~p~~~~~~~L-~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~-~~~~~g-~~~~a~ 1001 (1211)
                         +...++.|-..-|..+ +..+.+.|+...|+.++.+--+ ..+| +...|..+.. .+++-| +.++|.
T Consensus      1315 ---ak~qnykpil~kyva~yaa~li~~~d~aq~lal~~q~ga-~anpanfniyk~i~ed~lakpgt~~~eay 1382 (1636)
T KOG3616|consen 1315 ---AKKQNYKPILDKYVALYAAHLIHEGDLAQALALLEQHGA-PANPANFNIYKLIFEDMLAKPGTNCAEAY 1382 (1636)
T ss_pred             ---HHhcccHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHhCC-CCCcccccHHHHHHHHHhcCCCcchHHHH
Confidence               6667777744444443 3456788999999998765332 2345 3335655554 555555 455544

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.64  E-value=5.3e-12  Score=133.22  Aligned_cols=195  Identities=11%  Similarity=-0.006  Sum_probs=107.1

Q ss_pred             hHHHHHHHHHhcCcHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhcchhhHHHHHHHHHHcCCCC-ChhHHHHHHHHH
Q 000951          808 TFNVLMRKCCEAGEMGKAFDLFNIMNMLGVVPDTNTQDAIIMGLKRIAAFQESHFVLRGMAEKGLTP-KCTQYITLINGM  886 (1211)
Q Consensus       808 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~g~~p-~~~~~~~l~~~~  886 (1211)
                      +.-.+++-|.-.++.++|+..|+++++.+ +.....|..++.-|...++...|++.|+.+++  ++| |..+|..|+.+|
T Consensus       332 TCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvd--i~p~DyRAWYGLGQaY  408 (559)
T KOG1155|consen  332 TCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIESYRRAVD--INPRDYRAWYGLGQAY  408 (559)
T ss_pred             ceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHHHHHHHh--cCchhHHHHhhhhHHH
Confidence            34444445555555666666666665432 12244555566666666666666666666665  555 345666666666


Q ss_pred             HhcCChhhHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCcccCHHHHHHHHHHhhhhCCHHHHH
Q 000951          887 CRVGNFQGAFKLKDEMEALGISSSDVAESAMVRGLAHCGKVEEAMLVLNRMLRMRLVPTIATFTTLIHKFCKEAKFVDAL  966 (1211)
Q Consensus       887 ~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~p~~~~~~~L~~~~~~~g~~~~A~  966 (1211)
                      .-.+-..=|+-+|+++.+. -|.|+..|..||.+|.+.++.++|++.|.+++..+-. +..++..|+..|-+.++.++|.
T Consensus       409 eim~Mh~YaLyYfqkA~~~-kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dt-e~~~l~~LakLye~l~d~~eAa  486 (559)
T KOG1155|consen  409 EIMKMHFYALYYFQKALEL-KPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDT-EGSALVRLAKLYEELKDLNEAA  486 (559)
T ss_pred             HHhcchHHHHHHHHHHHhc-CCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcccc-chHHHHHHHHHHHHHHhHHHHH
Confidence            6666666666666666554 2445556666666666666666666666666655422 3355666666666666666666


Q ss_pred             HHHHHHHhcC-----CCCchH-HHHHHHHHHHhCCChhHHHHHHHHH
Q 000951          967 KLKGTMELSG-----VKLDVV-SYNVLISGLCANGDVMPAFELYEEM 1007 (1211)
Q Consensus       967 ~~~~~~~~~~-----~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~ 1007 (1211)
                      ..|....+..     +.|+.. +...|+.-+.+.++|++|.......
T Consensus       487 ~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~  533 (559)
T KOG1155|consen  487 QYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLV  533 (559)
T ss_pred             HHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHH
Confidence            5554333211     222222 2233444555666666666555444

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=99.63  E-value=1.4e-10  Score=130.64  Aligned_cols=130  Identities=15%  Similarity=0.028  Sum_probs=108.0

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhCCcccCHHHHHHHHHHhhhhCCHHHHHHHHHHHHhcCCCCchH-HHHHHHHHH
Q 000951          913 AESAMVRGLAHCGKVEEAMLVLNRMLRMRLVPTIATFTTLIHKFCKEAKFVDALKLKGTMELSGVKLDVV-SYNVLISGL  991 (1211)
Q Consensus       913 ~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~p~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~  991 (1211)
                      .|...++.+.+.++.++|...+.++....+. .+.+|+..|..+-..|.++||.+.|.....  ++|+.. +...++.++
T Consensus       652 lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l-~~~~~~~~G~~~~~~~~~~EA~~af~~Al~--ldP~hv~s~~Ala~~l  728 (799)
T KOG4162|consen  652 LWLLAADLFLLSGNDDEARSCLLEASKIDPL-SASVYYLRGLLLEVKGQLEEAKEAFLVALA--LDPDHVPSMTALAELL  728 (799)
T ss_pred             HHHHHHHHHHhcCCchHHHHHHHHHHhcchh-hHHHHHHhhHHHHHHHhhHHHHHHHHHHHh--cCCCCcHHHHHHHHHH
Confidence            5667788889999999999999999887765 888999999999999999999999875554  499665 889999999


Q ss_pred             HhCCChhHHHH--HHHHHHHcCCccCh-hhHHHHHHHHHhcccchHHHHHHHHHHHHcC
Q 000951          992 CANGDVMPAFE--LYEEMKHKGLCPNS-TTYSVLIDAISKKENNLVKGEILLKDIQERG 1047 (1211)
Q Consensus       992 ~~~g~~~~a~~--~~~~~~~~g~~p~~-~~~~~l~~~~~~~~~~~~~a~~~~~~l~~~~ 1047 (1211)
                      ...|+-.-|..  +...+.+  +.|.. ..|+.++..+.+.|+...+++.+..+++-..
T Consensus       729 le~G~~~la~~~~~L~dalr--~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~  785 (799)
T KOG4162|consen  729 LELGSPRLAEKRSLLSDALR--LDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEE  785 (799)
T ss_pred             HHhCCcchHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhcc
Confidence            99997777777  7777765  66755 9999999999999999997777776664443

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.62  E-value=8.3e-14  Score=154.23  Aligned_cols=201  Identities=13%  Similarity=0.041  Sum_probs=132.7

Q ss_pred             CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHhhHHHHHHHHHhcCcHHHHHHHHHHHHHCCCCCChhhHHHHH
Q 000951          770 DKLTCHSLILGFCETGMLEVGFKFLKKMIAEGTMV-DCFTFNVLMRKCCEAGEMGKAFDLFNIMNMLGVVPDTNTQDAII  848 (1211)
Q Consensus       770 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~  848 (1211)
                      .+.+|.+++..|.-+++.+.|++.|++++.  ++| ...+|..++.=+....++|.|...|+.++... +..-..|..++
T Consensus       420 sPesWca~GNcfSLQkdh~~Aik~f~RAiQ--ldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~-~rhYnAwYGlG  496 (638)
T KOG1126|consen  420 SPESWCALGNCFSLQKDHDTAIKCFKRAIQ--LDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVD-PRHYNAWYGLG  496 (638)
T ss_pred             CcHHHHHhcchhhhhhHHHHHHHHHHHhhc--cCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCC-chhhHHHHhhh
Confidence            345566666666666666666666666655  344 24455555555556666666666666665422 12245666777


Q ss_pred             HHHHhhcchhhHHHHHHHHHHcCCCCCh-hHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCH
Q 000951          849 MGLKRIAAFQESHFVLRGMAEKGLTPKC-TQYITLINGMCRVGNFQGAFKLKDEMEALGISSSDVAESAMVRGLAHCGKV  927 (1211)
Q Consensus       849 ~~~~~~g~~~eA~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~  927 (1211)
                      ..|.++++++.|+-.|+++++  ++|.. +....++..+.+.|+.|+|+.+|+++.... +.++..-...+.++...+++
T Consensus       497 ~vy~Kqek~e~Ae~~fqkA~~--INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld-~kn~l~~~~~~~il~~~~~~  573 (638)
T KOG1126|consen  497 TVYLKQEKLEFAEFHFQKAVE--INPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLD-PKNPLCKYHRASILFSLGRY  573 (638)
T ss_pred             hheeccchhhHHHHHHHhhhc--CCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcC-CCCchhHHHHHHHHHhhcch
Confidence            777777777777777777777  77754 556666777777777778888877777653 44555555667777777888


Q ss_pred             HHHHHHHHHHHhCCcccCHHHHHHHHHHhhhhCCHHHHHHHHHHHHhcCCCC
Q 000951          928 EEAMLVLNRMLRMRLVPTIATFTTLIHKFCKEAKFVDALKLKGTMELSGVKL  979 (1211)
Q Consensus       928 ~eA~~~~~~~~~~~~~p~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~p  979 (1211)
                      ++|+..++++.+.-|. +..++..+|.+|.+.|+.+.|+.-|.-+..+  +|
T Consensus       574 ~eal~~LEeLk~~vP~-es~v~~llgki~k~~~~~~~Al~~f~~A~~l--dp  622 (638)
T KOG1126|consen  574 VEALQELEELKELVPQ-ESSVFALLGKIYKRLGNTDLALLHFSWALDL--DP  622 (638)
T ss_pred             HHHHHHHHHHHHhCcc-hHHHHHHHHHHHHHHccchHHHHhhHHHhcC--CC
Confidence            8888888887776554 6677777888888888888887776655444  55

>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.61  E-value=6.2e-08  Score=111.49  Aligned_cols=730  Identities=14%  Similarity=0.119  Sum_probs=358.1

Q ss_pred             HHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhc
Q 000951          110 LLIRVYLREGMVEYALETFQLMGFRGFNPSVYTCNMMLSFMLKDRRVDSVWLLFDDMLDRKICPNVA-TFNILINVSCVE  188 (1211)
Q Consensus       110 ~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~l~~~~~~~~a~~~~~~m~~~~~~~~~~-~~~~li~~~~~~  188 (1211)
                      .+++.+.+ -..+.+.+....|.+.  .|...-.+.+.+.+...+....+..+.-+..+. ..|+.. .-+.++..-.. 
T Consensus       515 flLq~l~r-~sPD~~~qFa~~l~Q~--~~~~~die~I~DlFme~N~iQq~TSFLLdaLK~-~~Pd~g~LQTrLLE~NL~-  589 (1666)
T KOG0985|consen  515 FLLQQLKR-SSPDQALQFAMMLVQD--EEPLADIEQIVDLFMELNLIQQCTSFLLDALKL-NSPDEGHLQTRLLEMNLV-  589 (1666)
T ss_pred             HHHHHHHc-cChhHHHHHHHHhhcc--CCCcccHHHHHHHHHHHHhhhhhHHHHHHHhcC-CChhhhhHHHHHHHHHhc-
Confidence            34444444 4456666555554432  223344555555666666666666666665543 233332 22333322211 


Q ss_pred             CChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHH----HHHHHHhcCChHHH
Q 000951          189 GKLKKAGYLLRKMEESGYVPNIVTYNTLLNWYCKKGRYKAAFKLIDCMASKGIEADVCTYNM----FIDDLCRNNRSAKG  264 (1211)
Q Consensus       189 g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~----li~~~~~~g~~~~A  264 (1211)
                          .|-++-+.+.-.+.. +..-+..+.+.|-+.|-+..|++.+..+.+-  +..++.-+.    -+-.+...-.++++
T Consensus       590 ----~aPqVADAILgN~mF-tHyDra~IAqLCEKAGL~qraLehytDl~DI--KR~vVhth~L~pEwLv~yFg~lsve~s  662 (1666)
T KOG0985|consen  590 ----HAPQVADAILGNDMF-THYDRAEIAQLCEKAGLLQRALEHYTDLYDI--KRVVVHTHLLNPEWLVNYFGSLSVEDS  662 (1666)
T ss_pred             ----cchHHHHHHHhcccc-ccccHHHHHHHHHhcchHHHHHHhcccHHHH--HHHHHHhccCCHHHHHHHHHhcCHHHH
Confidence                122222222222111 1222667777888888888888777665431  111111111    12344555567788


Q ss_pred             HHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-----------CCCCChHHHHHHHHHHHhcCCHHH
Q 000951          265 YLLLKNMRKRMITPNEVTYNTLINGFVKEGKIQVASRVFDEMSML-----------NFSPNSITYNELIDGHCCKGNFKE  333 (1211)
Q Consensus       265 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----------g~~~~~~~~~~li~~~~~~g~~~~  333 (1211)
                      .+.++.|...++..|..+.-.+..-|+..=-.+.-.++|+..++.           ++.-|....-..|.+-|+.|++.+
T Consensus       663 ~eclkaml~~NirqNlQi~VQvatky~eqlg~~~li~lFE~fks~eGL~yfLgSivn~seDpevh~KYIqAA~kt~QikE  742 (1666)
T KOG0985|consen  663 LECLKAMLSANIRQNLQIVVQVATKYHEQLGAQALIELFESFKSYEGLYYFLGSIVNFSEDPEVHFKYIQAACKTGQIKE  742 (1666)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCHHHHHHHHHhhccchhHHHHHHHHhccccCchHHHHHHHHHHhhccHHH
Confidence            888888888777777777766666677666666666777665432           223344455566777777777777


Q ss_pred             HHHHHHHHHHCCCCcCHhHHHHHHHHHH--------hcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHH
Q 000951          334 AFRLLAMMEEMGLRPNEVSYGALLNGFC--------KHAKFDLARSLLERMRTNGISISCIAYTSVIDGLCKCGLLDEAM  405 (1211)
Q Consensus       334 A~~~~~~m~~~g~~p~~~t~~~ll~~~~--------~~g~~~~a~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~  405 (1211)
                      ..++.++-.   +-.-..+-|.+-.+-.        -..+++-..++.-.+-..+       ....|..|.+.=+....-
T Consensus       743 vERicresn---~YdpErvKNfLkeAkL~DqlPLiiVCDRf~fVhdlvlYLyrnn-------~~kyIE~yVQkvNps~~p  812 (1666)
T KOG0985|consen  743 VERICRESN---CYDPERVKNFLKEAKLTDQLPLIIVCDRFDFVHDLVLYLYRNN-------LQKYIEIYVQKVNPSRTP  812 (1666)
T ss_pred             HHHHHhccc---cCCHHHHHHHHHhccccccCceEEEecccccHHHHHHHHHHhh-------HHHHHHHHHhhcCCcccc
Confidence            776654421   1101111111110000        0000000000000000000       001122222221111111


Q ss_pred             HHHHHHHhCCCCC-----------CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHH-
Q 000951          406 QLFNKMFKDGLNP-----------DLITFSVLINGFCKVGMTRKAKAVLCKMYRDGLVPNKIIYSTLIYYFCKMGKVTE-  473 (1211)
Q Consensus       406 ~~~~~m~~~g~~p-----------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~-  473 (1211)
                      .+...+++..+.-           ....-.-|..-.-+.++..--...++.....| ..|..+++.+...|..+++-.+ 
T Consensus       813 ~VvG~LLD~dC~E~~ik~Li~~v~gq~~~deLv~EvEkRNRLklLlp~LE~~i~eG-~~d~a~hnAlaKIyIDSNNnPE~  891 (1666)
T KOG0985|consen  813 QVVGALLDVDCSEDFIKNLILSVRGQFPVDELVEEVEKRNRLKLLLPWLESLIQEG-SQDPATHNALAKIYIDSNNNPER  891 (1666)
T ss_pred             hhhhhhhcCCCcHHHHHHHHHHHhccCChHHHHHHHHhhhhHHHHHHHHHHHHhcc-CcchHHHhhhhheeecCCCChHH
Confidence            2222221111100           01111233344445566666666777777777 5678888888888876654332 


Q ss_pred             HHH---HHHH------HHHcCCCC----------CH---------HHHHHHHHHHHcCCChHHH-----------HHHHH
Q 000951          474 AMK---VYAV------MNRNAQGS----------DH---------FTCNMLVASLCKGGKVCEA-----------EDYVG  514 (1211)
Q Consensus       474 A~~---~~~~------~~~~~~~~----------~~---------~~~~~li~~~~~~g~~~~A-----------~~~~~  514 (1211)
                      -++   .|+.      -.++++..          |.         ..+-....-+.+..+.+--           +.+.+
T Consensus       892 fLkeN~yYDs~vVGkYCEKRDP~lA~vaYerGqcD~elI~vcNeNSlfK~~aRYlv~R~D~~LW~~VL~e~n~~rRqLiD  971 (1666)
T KOG0985|consen  892 FLKENPYYDSKVVGKYCEKRDPHLACVAYERGQCDLELINVCNENSLFKSQARYLVERSDPDLWAKVLNEENPYRRQLID  971 (1666)
T ss_pred             hcccCCcchhhHHhhhhcccCCceEEEeecccCCcHHHHHhcCchhHHHHHHHHHHhccChHHHHHHHhccChHHHHHHH
Confidence            111   1110      00111100          11         1111122222222222211           11222


Q ss_pred             HHHhcCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCC
Q 000951          515 HMKRIGV--VPNSITFDCMIDGYGTLGDGLKAFSMFDEMVKLG--HHPSIFTYGSLLKGLCKGGNLKEAKRFLNSLHHIP  590 (1211)
Q Consensus       515 ~~~~~g~--~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~--~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~  590 (1211)
                      +....++  ..|+.....-+.++...+-+.+-++++++++-..  +.-+...-+.|+-.-.+ .+.....+..+++-..+
T Consensus       972 qVv~tal~E~~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAik-ad~trVm~YI~rLdnyD 1050 (1666)
T KOG0985|consen  972 QVVQTALPETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIK-ADRTRVMEYINRLDNYD 1050 (1666)
T ss_pred             HHHHhcCCccCChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhh-cChHHHHHHHHHhccCC
Confidence            2222211  1233344445666777777777777777765321  11111112222222222 23334444444443322


Q ss_pred             CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCCHHHHH
Q 000951          591 SAVDTVAYNTILAETCKSGNLWEAIVLLDEMVQFNLLPDRYTYTILLAGLCRKGKVVSALLFFEKVVSKRTFSPNNVMFT  670 (1211)
Q Consensus       591 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~  670 (1211)
                      .+       .+.......+-+++|..+|++.-.     +....+.|+.   .-+..+.|.++-++.-       ....|.
T Consensus      1051 a~-------~ia~iai~~~LyEEAF~ifkkf~~-----n~~A~~VLie---~i~~ldRA~efAe~~n-------~p~vWs 1108 (1666)
T KOG0985|consen 1051 AP-------DIAEIAIENQLYEEAFAIFKKFDM-----NVSAIQVLIE---NIGSLDRAYEFAERCN-------EPAVWS 1108 (1666)
T ss_pred             ch-------hHHHHHhhhhHHHHHHHHHHHhcc-----cHHHHHHHHH---HhhhHHHHHHHHHhhC-------ChHHHH
Confidence            11       133444556667777777776532     3444444442   3455666666655542       234677


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC
Q 000951          671 CLVDGLFKAGQSKAAMHISKIMDKEGVYPDTIAFNAVMDGFSRMGNMMMANDLLSTMRSRKLCPSLATYNILLHGYSKKK  750 (1211)
Q Consensus       671 ~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g  750 (1211)
                      .+..+-.+.|...+|++-|-..      .|+..|.-+++...+.|+|++-...+..++++.-.|...  ..|+-+|.+.+
T Consensus      1109 qlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~AyAkt~ 1180 (1666)
T KOG0985|consen 1109 QLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFAYAKTN 1180 (1666)
T ss_pred             HHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHHHHhc
Confidence            7777777888888877665433      356677778888888888888888777777665455443  35667777777


Q ss_pred             ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCcHHHHHHHHH
Q 000951          751 DLLMCSMLLNTMKMEGLLPDKLTCHSLILGFCETGMLEVGFKFLKKMIAEGTMVDCFTFNVLMRKCCEAGEMGKAFDLFN  830 (1211)
Q Consensus       751 ~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~  830 (1211)
                      +..+-.++.       ..|+.......+.-|...+.++.|.-+|..+-         .|..|...+...|++..|.+.-+
T Consensus      1181 rl~elE~fi-------~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~vS---------N~a~La~TLV~LgeyQ~AVD~aR 1244 (1666)
T KOG0985|consen 1181 RLTELEEFI-------AGPNVANIQQVGDRCFEEKMYEAAKLLYSNVS---------NFAKLASTLVYLGEYQGAVDAAR 1244 (1666)
T ss_pred             hHHHHHHHh-------cCCCchhHHHHhHHHhhhhhhHHHHHHHHHhh---------hHHHHHHHHHHHHHHHHHHHHhh
Confidence            766544433       34666666777777777888887777776432         45666667777777777776655


Q ss_pred             HHHHCCCCCChhhHHHHHHHHHhhcchhhHHHHHHHHHHcCCC--CChhHHHHHHHHHHhcCChhhHHHHHHHHHHcCCC
Q 000951          831 IMNMLGVVPDTNTQDAIIMGLKRIAAFQESHFVLRGMAEKGLT--PKCTQYITLINGMCRVGNFQGAFKLKDEMEALGIS  908 (1211)
Q Consensus       831 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~g~~--p~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~  908 (1211)
                      ++.      +.-+|.....+|...+.+.-|..       -|+.  -...-...++.-|...|-++|-+.+++..+-.. .
T Consensus      1245 KAn------s~ktWK~VcfaCvd~~EFrlAQi-------CGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLE-R 1310 (1666)
T KOG0985|consen 1245 KAN------STKTWKEVCFACVDKEEFRLAQI-------CGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLE-R 1310 (1666)
T ss_pred             hcc------chhHHHHHHHHHhchhhhhHHHh-------cCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchh-H
Confidence            542      34566666666655444332221       1221  122334555666666666666666666554221 1


Q ss_pred             CchHHHHHHHHHHHh
Q 000951          909 SSDVAESAMVRGLAH  923 (1211)
Q Consensus       909 ~~~~~~~~l~~~~~~  923 (1211)
                      .....+..++-.|.+
T Consensus      1311 AHMgmfTELaiLYsk 1325 (1666)
T KOG0985|consen 1311 AHMGMFTELAILYSK 1325 (1666)
T ss_pred             HHHHHHHHHHHHHHh
Confidence            223334444444443

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.60  E-value=9.9e-10  Score=116.26  Aligned_cols=422  Identities=12%  Similarity=0.065  Sum_probs=198.7

Q ss_pred             cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHH
Q 000951          433 VGMTRKAKAVLCKMYRDGLVPNKIIYSTLIYYFCKMGKVTEAMKVYAVMNRNAQGSDHFTCNMLVASLCKGGKVCEAEDY  512 (1211)
Q Consensus       433 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~  512 (1211)
                      ++++..|..+|++++.-. ..+...|...+.+-.+...+..|..+++.++..-+..|. .|-..+.+--..|++..|.++
T Consensus        86 q~e~~RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdq-lWyKY~ymEE~LgNi~gaRqi  163 (677)
T KOG1915|consen   86 QKEIQRARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQ-LWYKYIYMEEMLGNIAGARQI  163 (677)
T ss_pred             HHHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHH-HHHHHHHHHHHhcccHHHHHH
Confidence            344444455554444432 233333444444444455555555555554443332222 222233333344555555555


Q ss_pred             HHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCC
Q 000951          513 VGHMKRIGVVPNSITFDCMIDGYGTLGDGLKAFSMFDEMVKLGHHPSIFTYGSLLKGLCKGGNLKEAKRFLNSLHHIPSA  592 (1211)
Q Consensus       513 ~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~  592 (1211)
                      |++-.+-  .|+..+|++.|+.=.+-...+.|..+|++.+-  +.|++.+|......=.+.|++..+..+|..+.+.-..
T Consensus       164 ferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~--~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~  239 (677)
T KOG1915|consen  164 FERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVL--VHPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGD  239 (677)
T ss_pred             HHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe--ecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhh
Confidence            5554442  45555555555555555555555555555543  3455555555555555555555555555554432111


Q ss_pred             --ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhCCCh---HHHH-----HHHHHHHHcC
Q 000951          593 --VDTVAYNTILAETCKSGNLWEAIVLLDEMVQFNLLPD--RYTYTILLAGLCRKGKV---VSAL-----LFFEKVVSKR  660 (1211)
Q Consensus       593 --~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~--~~~~~~li~~~~~~g~~---~~A~-----~~~~~~~~~~  660 (1211)
                        .+...+.++...-.++..++.|..+|.-.++. ++.+  ...|..+...--+-|+.   ++++     --|++.++.+
T Consensus       240 d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~-~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~n  318 (677)
T KOG1915|consen  240 DEEAEILFVAFAEFEERQKEYERARFIYKYALDH-IPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKN  318 (677)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhC
Confidence              12334445555555556666666666665553 1111  12233333222233332   2222     1234444443


Q ss_pred             CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCH--HHHHHHH----H-H-H--HhcCChHHHHHHHHHHHHC
Q 000951          661 TFSPNNVMFTCLVDGLFKAGQSKAAMHISKIMDKEGVYPDT--IAFNAVM----D-G-F--SRMGNMMMANDLLSTMRSR  730 (1211)
Q Consensus       661 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~--~~~~~li----~-~-~--~~~g~~~~A~~~~~~~~~~  730 (1211)
                        +-|..+|--.++.-...|+.+...++|+.++.. ++|-.  ..|..-|    + + |  ....+.+.+.++++..++ 
T Consensus       319 --p~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~-  394 (677)
T KOG1915|consen  319 --PYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLD-  394 (677)
T ss_pred             --CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh-
Confidence              344555555555555566666666666666543 23311  1111111    0 0 0  124555556666665554 


Q ss_pred             CCCC-CHHHHH----HHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC
Q 000951          731 KLCP-SLATYN----ILLHGYSKKKDLLMCSMLLNTMKMEGLLPDKLTCHSLILGFCETGMLEVGFKFLKKMIAEGTMVD  805 (1211)
Q Consensus       731 ~~~p-~~~~~~----~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~  805 (1211)
                       +-| ...|+.    ..+.--.++.+...|.+++..++-  .-|-.-++...+..-.+.+++|....+|++.++-+ +.+
T Consensus       395 -lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG--~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~-Pe~  470 (677)
T KOG1915|consen  395 -LIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIG--KCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFS-PEN  470 (677)
T ss_pred             -hcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhc--cCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-hHh
Confidence             233 222222    222233345556666666555553  34555555555555555566666666666666532 223


Q ss_pred             HhhHHHHHHHHHhcCcHHHHHHHHHHHHHCC-CCCChhhHHHHHHHHHhhcchhhHHHHHHHHHH
Q 000951          806 CFTFNVLMRKCCEAGEMGKAFDLFNIMNMLG-VVPDTNTQDAIIMGLKRIAAFQESHFVLRGMAE  869 (1211)
Q Consensus       806 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~  869 (1211)
                      ..+|...+..-...|+.+.|..+|.-+++.. +.-....|-+.++-=...|.+++|..+|++.++
T Consensus       471 c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~  535 (677)
T KOG1915|consen  471 CYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLD  535 (677)
T ss_pred             hHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHH
Confidence            4555555555555566666666666555421 111123344444444455666666666666655

>TIGR00540 hemY_coli hemY protein

Probab=99.60  E-value=3.1e-12  Score=147.59  Aligned_cols=288  Identities=11%  Similarity=0.021  Sum_probs=210.5

Q ss_pred             hcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHhcCChHH
Q 000951          713 RMGNMMMANDLLSTMRSRKLCPS-LATYNILLHGYSKKKDLLMCSMLLNTMKMEGLLPDKL--TCHSLILGFCETGMLEV  789 (1211)
Q Consensus       713 ~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~--~~~~l~~~~~~~g~~~~  789 (1211)
                      ..|+++.|.+.+.+..+.  .|+ ...+...+.++.+.|+++.|.+.+.++.+.  .|+..  ........+...|+++.
T Consensus        96 ~~g~~~~A~~~l~~~~~~--~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~--~p~~~l~~~~~~a~l~l~~~~~~~  171 (409)
T TIGR00540        96 AEGDYAKAEKLIAKNADH--AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAEL--AGNDNILVEIARTRILLAQNELHA  171 (409)
T ss_pred             hCCCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCcCchHHHHHHHHHHHHCCCHHH
Confidence            478888888888887754  454 344455567788889999999999888763  35442  33334677788899999


Q ss_pred             HHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHHHHHCCCCCChhhHH---HHHHHHHhhcchhhHHHHHHH
Q 000951          790 GFKFLKKMIAEGTMVDCFTFNVLMRKCCEAGEMGKAFDLFNIMNMLGVVPDTNTQD---AIIMGLKRIAAFQESHFVLRG  866 (1211)
Q Consensus       790 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~---~l~~~~~~~g~~~eA~~~~~~  866 (1211)
                      |...++++.+.. +.+..+...++.+|...|++++|.+.++.+.+.+..++.....   .....+...+..+++...+.+
T Consensus       172 Al~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~  250 (409)
T TIGR00540       172 ARHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLN  250 (409)
T ss_pred             HHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence            999999988863 3356678888888999999999999998888765433222111   112222344555566667777


Q ss_pred             HHHcCCCC-----ChhHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCchH-H-HHHHHHHHHhcCCHHHHHHHHHHHHh
Q 000951          867 MAEKGLTP-----KCTQYITLINGMCRVGNFQGAFKLKDEMEALGISSSDV-A-ESAMVRGLAHCGKVEEAMLVLNRMLR  939 (1211)
Q Consensus       867 ~~~~g~~p-----~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~-~-~~~l~~~~~~~g~~~eA~~~~~~~~~  939 (1211)
                      +.+  ..|     +...+..++..+...|+.++|.+.+++.++.. +++.. . ...........++.+.+++.+++.++
T Consensus       251 ~~~--~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~-pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk  327 (409)
T TIGR00540       251 WWK--NQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL-GDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAK  327 (409)
T ss_pred             HHH--HCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC-CCcccchhHHHHHhhhcCCCChHHHHHHHHHHHH
Confidence            776  344     56788888899999999999999999998763 22221 1 11222233445778899999999998


Q ss_pred             CCcccCH--HHHHHHHHHhhhhCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhCCChhHHHHHHHHHHH
Q 000951          940 MRLVPTI--ATFTTLIHKFCKEAKFVDALKLKGTMELSGVKLDVVSYNVLISGLCANGDVMPAFELYEEMKH 1009 (1211)
Q Consensus       940 ~~~~p~~--~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 1009 (1211)
                      ..|. |+  ....++|+++.+.|+|++|.+.|+........|++..+..++..+.+.|+.++|.+++++...
T Consensus       328 ~~p~-~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~  398 (409)
T TIGR00540       328 NVDD-KPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLG  398 (409)
T ss_pred             hCCC-ChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            8765 77  788899999999999999999998545555589988888999999999999999999987643

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.59  E-value=2.5e-11  Score=131.79  Aligned_cols=281  Identities=15%  Similarity=0.054  Sum_probs=227.5

Q ss_pred             CCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHH
Q 000951          733 CPSLATYNILLHGYSKKKDLLMCSMLLNTMKMEGLLP-DKLTCHSLILGFCETGMLEVGFKFLKKMIAEGTMVDCFTFNV  811 (1211)
Q Consensus       733 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~  811 (1211)
                      ..++.......+-+...+++.+..++.....+.  .| ....+-.-+..+.+.|+..+-..+-.++... .|....+|.+
T Consensus       241 ~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~--dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~a  317 (611)
T KOG1173|consen  241 AENLDLLAEKADRLYYGCRFKECLKITEELLEK--DPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFA  317 (611)
T ss_pred             hhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhh--CCCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhh
Confidence            346666677778888999999999999999984  33 3333333344777888888777777777764 4455789999


Q ss_pred             HHHHHHhcCcHHHHHHHHHHHHHCCCCCC-hhhHHHHHHHHHhhcchhhHHHHHHHHHHcCCCCC-hhHHHHHHHHHHhc
Q 000951          812 LMRKCCEAGEMGKAFDLFNIMNMLGVVPD-TNTQDAIIMGLKRIAAFQESHFVLRGMAEKGLTPK-CTQYITLINGMCRV  889 (1211)
Q Consensus       812 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~  889 (1211)
                      ++--|.-.|++++|++.|.+....  .|. ...|-..+..|.-.|..++|...|..+.+  +-|. ..-+..++--|.+.
T Consensus       318 Vg~YYl~i~k~seARry~SKat~l--D~~fgpaWl~fghsfa~e~EhdQAmaaY~tAar--l~~G~hlP~LYlgmey~~t  393 (611)
T KOG1173|consen  318 VGCYYLMIGKYSEARRYFSKATTL--DPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAAR--LMPGCHLPSLYLGMEYMRT  393 (611)
T ss_pred             HHHHHHHhcCcHHHHHHHHHHhhc--CccccHHHHHHhHHhhhcchHHHHHHHHHHHHH--hccCCcchHHHHHHHHHHh
Confidence            998888999999999999998763  343 67899999999999999999999999988  5554 35567778888999


Q ss_pred             CChhhHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----Ccc-c-CHHHHHHHHHHhhhhCCHH
Q 000951          890 GNFQGAFKLKDEMEALGISSSDVAESAMVRGLAHCGKVEEAMLVLNRMLRM----RLV-P-TIATFTTLIHKFCKEAKFV  963 (1211)
Q Consensus       890 g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~----~~~-p-~~~~~~~L~~~~~~~g~~~  963 (1211)
                      ++.+-|.++|.++... .|.|+.+.+-++.+....+.+.+|...|+.+++.    +.+ + ...++++||.+|++.++++
T Consensus       394 ~n~kLAe~Ff~~A~ai-~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~  472 (611)
T KOG1173|consen  394 NNLKLAEKFFKQALAI-APSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYE  472 (611)
T ss_pred             ccHHHHHHHHHHHHhc-CCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHH
Confidence            9999999999999977 5788889999999999999999999999999842    111 1 4567899999999999999


Q ss_pred             HHHHHHHHHHhcCCCC-chHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCccChhhHHHHHHH
Q 000951          964 DALKLKGTMELSGVKL-DVVSYNVLISGLCANGDVMPAFELYEEMKHKGLCPNSTTYSVLIDA 1025 (1211)
Q Consensus       964 ~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~ 1025 (1211)
                      +|+..|+.....  .| +..++..++-+|...|..+.|+..+.+.+  .++|+..+-.++.+.
T Consensus       473 eAI~~~q~aL~l--~~k~~~~~asig~iy~llgnld~Aid~fhKaL--~l~p~n~~~~~lL~~  531 (611)
T KOG1173|consen  473 EAIDYYQKALLL--SPKDASTHASIGYIYHLLGNLDKAIDHFHKAL--ALKPDNIFISELLKL  531 (611)
T ss_pred             HHHHHHHHHHHc--CCCchhHHHHHHHHHHHhcChHHHHHHHHHHH--hcCCccHHHHHHHHH
Confidence            999999876655  77 55588899999999999999999999984  578888555555443

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=99.58  E-value=7.9e-15  Score=160.70  Aligned_cols=255  Identities=14%  Similarity=0.076  Sum_probs=71.3

Q ss_pred             HHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 000951          708 MDGFSRMGNMMMANDLLSTMRSRKLCP-SLATYNILLHGYSKKKDLLMCSMLLNTMKMEGLLPDKLTCHSLILGFCETGM  786 (1211)
Q Consensus       708 i~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~  786 (1211)
                      ...+.+.|++++|.+++.+......+| |...|..++......++++.|+..|+++.+.+.. +...+..++.. ...++
T Consensus        15 A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~~   92 (280)
T PF13429_consen   15 ARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDGD   92 (280)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccccc
Confidence            444555566666666664433221122 4444445555555566666666666666553211 22233333333 45566


Q ss_pred             hHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHHHHHCC-CCCChhhHHHHHHHHHhhcchhhHHHHHH
Q 000951          787 LEVGFKFLKKMIAEGTMVDCFTFNVLMRKCCEAGEMGKAFDLFNIMNMLG-VVPDTNTQDAIIMGLKRIAAFQESHFVLR  865 (1211)
Q Consensus       787 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~eA~~~~~  865 (1211)
                      +++|.+++.+..+.  .+++..+...+..+...++++++.++++++.... .+++...|..++..+.+.|+.++|+..|+
T Consensus        93 ~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~  170 (280)
T PF13429_consen   93 PEEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYR  170 (280)
T ss_dssp             ---------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred             cccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            66666665555443  2334444555555666666666666666554311 12344455555555556666666666666


Q ss_pred             HHHHcCCCCC-hhHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCccc
Q 000951          866 GMAEKGLTPK-CTQYITLINGMCRVGNFQGAFKLKDEMEALGISSSDVAESAMVRGLAHCGKVEEAMLVLNRMLRMRLVP  944 (1211)
Q Consensus       866 ~~~~~g~~p~-~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~p  944 (1211)
                      ++++  ..|+ ......++..+...|+.+++.+.++...+.. +.++..+..++.++...|+.++|+..|+++.+.+|. 
T Consensus       171 ~al~--~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~-  246 (280)
T PF13429_consen  171 KALE--LDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPD-  246 (280)
T ss_dssp             HHHH--H-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-
T ss_pred             HHHH--cCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccccc-
Confidence            6655  5554 3445555555555555555555555554332 344444555555555555555555555555554433 


Q ss_pred             CHHHHHHHHHHhhhhCCHHHHHHHHH
Q 000951          945 TIATFTTLIHKFCKEAKFVDALKLKG  970 (1211)
Q Consensus       945 ~~~~~~~L~~~~~~~g~~~~A~~~~~  970 (1211)
                      |+.....++.++...|+.++|..+++
T Consensus       247 d~~~~~~~a~~l~~~g~~~~A~~~~~  272 (280)
T PF13429_consen  247 DPLWLLAYADALEQAGRKDEALRLRR  272 (280)
T ss_dssp             -HHHHHHHHHHHT-------------
T ss_pred             cccccccccccccccccccccccccc
Confidence            55555555555555555555555543

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=99.58  E-value=9.6e-09  Score=118.60  Aligned_cols=663  Identities=13%  Similarity=0.034  Sum_probs=387.3

Q ss_pred             CCHHHHHHHHHHHHHCCCCcC-HhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHH
Q 000951          329 GNFKEAFRLLAMMEEMGLRPN-EVSYGALLNGFCKHAKFDLARSLLERMRTNGISISCIAYTSVIDGLCKCGLLDEAMQL  407 (1211)
Q Consensus       329 g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~a~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~  407 (1211)
                      .+...|+..|-+..+..  |+ ...|..|...|+...+...|.+.|++..+.+ +.+...+-...+.|+...+++.|..+
T Consensus       472 K~~~~al~ali~alrld--~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I  548 (1238)
T KOG1127|consen  472 KNSALALHALIRALRLD--VSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEI  548 (1238)
T ss_pred             hhHHHHHHHHHHHHhcc--cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHH
Confidence            34666776666655532  22 3467778888887778888888888887776 45667777888888888888888777


Q ss_pred             HHHHHhCCC-CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 000951          408 FNKMFKDGL-NPDLITFSVLINGFCKVGMTRKAKAVLCKMYRDGLVPNKIIYSTLIYYFCKMGKVTEAMKVYAVMNRNAQ  486 (1211)
Q Consensus       408 ~~~m~~~g~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~  486 (1211)
                      .-..-++.. ..-...|....-.|.+.++...|..-|+...+.. +-|...|..++.+|...|++..|.++|..+....+
T Consensus       549 ~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP  627 (1238)
T KOG1127|consen  549 CLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRP  627 (1238)
T ss_pred             HHHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCc
Confidence            322222110 0011223333444667778888888888777754 55667788888888888888888888877766544


Q ss_pred             CCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhc------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH-------HHH
Q 000951          487 GSDHFTCNMLVASLCKGGKVCEAEDYVGHMKRI------GVVPNSITFDCMIDGYGTLGDGLKAFSMFDE-------MVK  553 (1211)
Q Consensus       487 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~------g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~-------m~~  553 (1211)
                      . +....--...+.+..|.+.+|...+......      +...-..++-.+...+...|-..+|...+++       .+.
T Consensus       628 ~-s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~  706 (1238)
T KOG1127|consen  628 L-SKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLI  706 (1238)
T ss_pred             H-hHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Confidence            3 2223333444567778888888777766532      1111112333333333333333333333333       222


Q ss_pred             CCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHHcCCH---H---HHHHHHHHHHhCCCC
Q 000951          554 LGHHPSIFTYGSLLKGLCKGGNLKEAKRFLNSLHHIPSAVDTVAYNTILAETCKSGNL---W---EAIVLLDEMVQFNLL  627 (1211)
Q Consensus       554 ~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~---~---~A~~~~~~m~~~~~~  627 (1211)
                      .....+...+..+-++|          .+|....  +..|+......+..-....+..   +   -|.+.+-.-++  ..
T Consensus       707 h~~~~~~~~Wi~asdac----------~~f~q~e--~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hls--l~  772 (1238)
T KOG1127|consen  707 HSLQSDRLQWIVASDAC----------YIFSQEE--PSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLS--LA  772 (1238)
T ss_pred             HhhhhhHHHHHHHhHHH----------HHHHHhc--ccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHH--Hh
Confidence            22222333333333322          2222222  1112222211111111122211   1   12222222222  22


Q ss_pred             CCHHHHHHHHHHHHh--------CCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC
Q 000951          628 PDRYTYTILLAGLCR--------KGKVVSALLFFEKVVSKRTFSPNNVMFTCLVDGLFKAGQSKAAMHISKIMDKEGVYP  699 (1211)
Q Consensus       628 p~~~~~~~li~~~~~--------~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~  699 (1211)
                      .+..+|..|+..|.+        ..+...|+..+++.++..  ..+..+|+.|.-. ...|.+.-|...|-+.... .+.
T Consensus       773 ~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L~--ann~~~WnaLGVl-sg~gnva~aQHCfIks~~s-ep~  848 (1238)
T KOG1127|consen  773 IHMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSLC--ANNEGLWNALGVL-SGIGNVACAQHCFIKSRFS-EPT  848 (1238)
T ss_pred             hccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHh--hccHHHHHHHHHh-hccchhhhhhhhhhhhhhc-ccc
Confidence            345666666655443        223457888999988853  4556777777655 5557777777777666544 244


Q ss_pred             CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCChHHHHHHHHH--HHHC--CCCCCHHHH
Q 000951          700 DTIAFNAVMDGFSRMGNMMMANDLLSTMRSRKLCP-SLATYNILLHGYSKKKDLLMCSMLLNT--MKME--GLLPDKLTC  774 (1211)
Q Consensus       700 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~--~~~~--g~~p~~~~~  774 (1211)
                      ...+|..+.-.+.+..+++.|...|.+.+.  +.| |...|.-....-...|+.-++..+|..  ....  |--|+..-|
T Consensus       849 ~~~~W~NlgvL~l~n~d~E~A~~af~~~qS--LdP~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw  926 (1238)
T KOG1127|consen  849 CHCQWLNLGVLVLENQDFEHAEPAFSSVQS--LDPLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYW  926 (1238)
T ss_pred             chhheeccceeEEecccHHHhhHHHHhhhh--cCchhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHH
Confidence            567788888788889999999999999984  577 778888777777788988888888877  2221  233344444


Q ss_pred             HHHHHHHHhcCChHHHHHHHHHHHHc---------CCCCCHhhHHHHHHHHHhcCcHHHHHHHHHHHHH-CCCCCChhhH
Q 000951          775 HSLILGFCETGMLEVGFKFLKKMIAE---------GTMVDCFTFNVLMRKCCEAGEMGKAFDLFNIMNM-LGVVPDTNTQ  844 (1211)
Q Consensus       775 ~~l~~~~~~~g~~~~A~~~~~~~~~~---------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~  844 (1211)
                      ..........|+.++-+...+++...         +.+.+...|...+......+.+.+|.++..+++. ...+-+...|
T Consensus       927 ~c~te~h~~Ng~~e~~I~t~~ki~sAs~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqy 1006 (1238)
T KOG1127|consen  927 LCATEIHLQNGNIEESINTARKISSASLALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQY 1006 (1238)
T ss_pred             HHHHHHHHhccchHHHHHHhhhhhhhHHHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence            44444445667766655554443322         3445577888888888888999999998887642 0011233333


Q ss_pred             H----HHHHHHHhhcchhhHHHHHHHHHHcCCCCCh--hHHHHHHHHHHhcCChhhHHHHHHHHHHcC-CCCch-HHHHH
Q 000951          845 D----AIIMGLKRIAAFQESHFVLRGMAEKGLTPKC--TQYITLINGMCRVGNFQGAFKLKDEMEALG-ISSSD-VAESA  916 (1211)
Q Consensus       845 ~----~l~~~~~~~g~~~eA~~~~~~~~~~g~~p~~--~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~-~~~~~-~~~~~  916 (1211)
                      +    ..+..++..|.++.|...+..      .|-.  .-......+..-.++++++++.|++++... .+.+. .....
T Consensus      1007 nvak~~~gRL~lslgefe~A~~a~~~------~~~evdEdi~gt~l~lFfkndf~~sl~~fe~aLsis~se~d~vvLl~k 1080 (1238)
T KOG1127|consen 1007 NVAKPDAGRLELSLGEFESAKKASWK------EWMEVDEDIRGTDLTLFFKNDFFSSLEFFEQALSISNSESDKVVLLCK 1080 (1238)
T ss_pred             hhhhhhhhhhhhhhcchhhHhhhhcc------cchhHHHHHhhhhHHHHHHhHHHHHHHHHHHHhhhcccccchhhhhHH
Confidence            3    556667777888766554433      2211  111111122245789999999999997542 22332 34455


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhCCcccCHHHHHHHHHHhhhhCCHHHHHHHHHHHHhcCCCCchHHH--HHHH-HHHHh
Q 000951          917 MVRGLAHCGKVEEAMLVLNRMLRMRLVPTIATFTTLIHKFCKEAKFVDALKLKGTMELSGVKLDVVSY--NVLI-SGLCA  993 (1211)
Q Consensus       917 l~~~~~~~g~~~eA~~~~~~~~~~~~~p~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~--~~l~-~~~~~  993 (1211)
                      ++......+..+.|...+-+.+...+ |+..+...|+.++.-..+-..-..+.+...... ......|  ..+. ..|..
T Consensus      1081 va~~~g~~~~k~~A~~lLfe~~~ls~-~~~~sll~L~A~~ild~da~~ssaileel~kl~-k~e~~~~~~~ll~e~i~~~ 1158 (1238)
T KOG1127|consen 1081 VAVCMGLARQKNDAQFLLFEVKSLSK-VQASSLLPLPAVYILDADAHGSSAILEELEKLL-KLEWFCWPPGLLKELIYAL 1158 (1238)
T ss_pred             HHHHHhhcccchHHHHHHHHHHHhCc-cchhhHHHHHHHHHHhhhhhhhHHHHHHHHHhh-hhHHhccChhHHHHHHHHH
Confidence            66667778888999988888887754 488888888777765555444444444433321 0111122  2233 37888


Q ss_pred             CCChhHHHHHHHHHHHcCCccCh-hhHHHHHHHH
Q 000951          994 NGDVMPAFELYEEMKHKGLCPNS-TTYSVLIDAI 1026 (1211)
Q Consensus       994 ~g~~~~a~~~~~~~~~~g~~p~~-~~~~~l~~~~ 1026 (1211)
                      .|+-+-..+..++..-  ..|.. ..|.-+...+
T Consensus      1159 ~~r~~~vk~~~qr~~h--~~P~~~~~WslL~vry 1190 (1238)
T KOG1127|consen 1159 QGRSVAVKKQIQRAVH--SNPGDPALWSLLSVRY 1190 (1238)
T ss_pred             hhhhHHHHHHHHHHHh--cCCCChHHHHHHHHHH
Confidence            8888888777777643  45644 8887776543

>KOG2047 consensus mRNA splicing factor [RNA processing and modification]

Probab=99.58  E-value=7.7e-08  Score=106.20  Aligned_cols=323  Identities=12%  Similarity=0.081  Sum_probs=160.4

Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC------HHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCcc---
Q 000951          524 NSITFDCMIDGYGTLGDGLKAFSMFDEMVKLGHHPS------IFTYGSLLKGLCKGGNLKEAKRFLNSLHHIPSAVD---  594 (1211)
Q Consensus       524 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~------~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~---  594 (1211)
                      ++..|..-+..+  .|+..+-+..|.+.++. +.|.      ...+..+.+.|-..|+++.|+.+|++..+.+...-   
T Consensus       348 nV~eW~kRV~l~--e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dL  424 (835)
T KOG2047|consen  348 NVEEWHKRVKLY--EGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDL  424 (835)
T ss_pred             cHHHHHhhhhhh--cCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHH
Confidence            455666555543  56666667777776653 2332      23456666777777788888888777776654421   


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC-----------------CHHHHHHHHHHHHhCCChHHHHHHHHHHH
Q 000951          595 TVAYNTILAETCKSGNLWEAIVLLDEMVQFNLLP-----------------DRYTYTILLAGLCRKGKVVSALLFFEKVV  657 (1211)
Q Consensus       595 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-----------------~~~~~~~li~~~~~~g~~~~A~~~~~~~~  657 (1211)
                      ..+|.....+-.+..+++.|+++.+.....--.|                 +...|..+++..-..|-++....+|++++
T Consensus       425 a~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdrii  504 (835)
T KOG2047|consen  425 AEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRII  504 (835)
T ss_pred             HHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence            3466666666667777777777777665421000                 11223333444444566666666666666


Q ss_pred             HcCCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHh---cCChHHHHHHHHHHHHCCC
Q 000951          658 SKRTFSPNNV-MFTCLVDGLFKAGQSKAAMHISKIMDKEGVYPDT-IAFNAVMDGFSR---MGNMMMANDLLSTMRSRKL  732 (1211)
Q Consensus       658 ~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~-~~~~~li~~~~~---~g~~~~A~~~~~~~~~~~~  732 (1211)
                      +..-..|..+ .|..+   +....-++++.++|+.-+..=-.|+. .+|+.-+.-+.+   .-+++.|+.+|++..+ +.
T Consensus       505 dLriaTPqii~NyAmf---LEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~C  580 (835)
T KOG2047|consen  505 DLRIATPQIIINYAMF---LEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GC  580 (835)
T ss_pred             HHhcCCHHHHHHHHHH---HHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cC
Confidence            6553333321 22222   23334456666665554332112332 344443333322   2345666777776665 44


Q ss_pred             CCCH-HHHH-HHHHHHHccCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH--
Q 000951          733 CPSL-ATYN-ILLHGYSKKKDLLMCSMLLNTMKMEGLLPDK--LTCHSLILGFCETGMLEVGFKFLKKMIAEGTMVDC--  806 (1211)
Q Consensus       733 ~p~~-~~~~-~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--  806 (1211)
                      +|.. .+.. .....=.+.|-...|+.+|+++-.. +++..  ..|+..+.--...=-...-..+|+++++.  -|+.  
T Consensus       581 pp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~-v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~--Lp~~~~  657 (835)
T KOG2047|consen  581 PPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSA-VKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIES--LPDSKA  657 (835)
T ss_pred             CHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHh--CChHHH
Confidence            4422 2211 1111222346666666666665542 33322  24444443222222233445566666653  2332  


Q ss_pred             -hhHHHHHHHHHhcCcHHHHHHHHHHHHHC-CCCCChhhHHHHHHHHHhhcc
Q 000951          807 -FTFNVLMRKCCEAGEMGKAFDLFNIMNML-GVVPDTNTQDAIIMGLKRIAA  856 (1211)
Q Consensus       807 -~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~  856 (1211)
                       ...-...++-++.|.++.|..+|.-..+. ++..+..-|.+--.-=.++|+
T Consensus       658 r~mclrFAdlEtklGEidRARaIya~~sq~~dPr~~~~fW~twk~FEvrHGn  709 (835)
T KOG2047|consen  658 REMCLRFADLETKLGEIDRARAIYAHGSQICDPRVTTEFWDTWKEFEVRHGN  709 (835)
T ss_pred             HHHHHHHHHHhhhhhhHHHHHHHHHhhhhcCCCcCChHHHHHHHHHHHhcCC
Confidence             12223344555666677776666655442 112223344443333344444

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=99.57  E-value=1.6e-08  Score=116.81  Aligned_cols=431  Identities=11%  Similarity=-0.042  Sum_probs=244.7

Q ss_pred             HHHHHHHHHHhhhCCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHH
Q 000951          576 LKEAKRFLNSLHHIPSAVDTVAYNTILAETCKSGNLWEAIVLLDEMVQFNLLPDRYTYTILLAGLCRKGKVVSALLFFEK  655 (1211)
Q Consensus       576 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~  655 (1211)
                      ...|...|-+..+..+. -...|..|+..|+...+...|.++|++..+.+ ..|...+......|+...++++|..+.-.
T Consensus       474 ~~~al~ali~alrld~~-~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~l~  551 (1238)
T KOG1127|consen  474 SALALHALIRALRLDVS-LAPAFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEICLR  551 (1238)
T ss_pred             HHHHHHHHHHHHhcccc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHHHH
Confidence            55555555555554433 34577788888887778888888888887764 33666678888888888888888887544


Q ss_pred             HHHcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-
Q 000951          656 VVSKRTFSPNNVMFTCLVDGLFKAGQSKAAMHISKIMDKEGVYPDTIAFNAVMDGFSRMGNMMMANDLLSTMRSRKLCP-  734 (1211)
Q Consensus       656 ~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p-  734 (1211)
                      .-+..+...-...|....-.|.+.++...|+..|+...... +.|...|..++.+|.++|++..|.++|.++..  ++| 
T Consensus       552 ~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~--LrP~  628 (1238)
T KOG1127|consen  552 AAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASL--LRPL  628 (1238)
T ss_pred             HhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHh--cCcH
Confidence            44332111123445556666777888888888888887653 44667788888888888888888888888774  455 


Q ss_pred             CHHHHHHHHHHHHccCChHHHHHHHHHHHHCC------CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc-------C
Q 000951          735 SLATYNILLHGYSKKKDLLMCSMLLNTMKMEG------LLPDKLTCHSLILGFCETGMLEVGFKFLKKMIAE-------G  801 (1211)
Q Consensus       735 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g------~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------~  801 (1211)
                      +...-.......+..|++.+|+..+...+..-      ..--..++..+...+...|=..+|..++++.++.       .
T Consensus       629 s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~  708 (1238)
T KOG1127|consen  629 SKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHS  708 (1238)
T ss_pred             hHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHh
Confidence            33333334445566788888888887766521      0001112222333344445555555555554432       1


Q ss_pred             CCCCHhhHHHHHHHHHhcCcHHHHHHHHHHHHHCCCCCChh--hHH-HHHHHHHhhcch--h----hHHHHHHHHHHcCC
Q 000951          802 TMVDCFTFNVLMRKCCEAGEMGKAFDLFNIMNMLGVVPDTN--TQD-AIIMGLKRIAAF--Q----ESHFVLRGMAEKGL  872 (1211)
Q Consensus       802 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~--~~~-~l~~~~~~~g~~--~----eA~~~~~~~~~~g~  872 (1211)
                      ...+...|..+.++          ...|-..     .|+.+  .+. .+..-....+..  +    -|.+.+-.-++  +
T Consensus       709 ~~~~~~~Wi~asda----------c~~f~q~-----e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hls--l  771 (1238)
T KOG1127|consen  709 LQSDRLQWIVASDA----------CYIFSQE-----EPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLS--L  771 (1238)
T ss_pred             hhhhHHHHHHHhHH----------HHHHHHh-----cccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHH--H
Confidence            11122223222221          1111111     12211  011 111101111111  1    11222222222  1


Q ss_pred             CCChhHHHHHHHHHHh--------cCChhhHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCccc
Q 000951          873 TPKCTQYITLINGMCR--------VGNFQGAFKLKDEMEALGISSSDVAESAMVRGLAHCGKVEEAMLVLNRMLRMRLVP  944 (1211)
Q Consensus       873 ~p~~~~~~~l~~~~~~--------~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~p  944 (1211)
                      ..+..+|..|+.-|.+        ..+...|+..++++++. ...+...|+.|+.+ ...|++.-|...|-+.....|. 
T Consensus       772 ~~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L-~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~sep~-  848 (1238)
T KOG1127|consen  772 AIHMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSL-CANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSEPT-  848 (1238)
T ss_pred             hhccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHH-hhccHHHHHHHHHh-hccchhhhhhhhhhhhhhcccc-
Confidence            1223344455444433        22334677777777765 25566677777766 5667788888887777776655 


Q ss_pred             CHHHHHHHHHHhhhhCCHHHHHHHHHHHHhcCCCCchH-HHHHHHHHHHhCCChhHHHHHHHHH--HH--cCCccChhhH
Q 000951          945 TIATFTTLIHKFCKEAKFVDALKLKGTMELSGVKLDVV-SYNVLISGLCANGDVMPAFELYEEM--KH--KGLCPNSTTY 1019 (1211)
Q Consensus       945 ~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~--~~--~g~~p~~~~~ 1019 (1211)
                      +..+|.+++..+.+..|++-|...|...+.+  .|++. .|-..+.+..+.|+.-++..++..-  ..  .|--|+..-|
T Consensus       849 ~~~~W~NlgvL~l~n~d~E~A~~af~~~qSL--dP~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw  926 (1238)
T KOG1127|consen  849 CHCQWLNLGVLVLENQDFEHAEPAFSSVQSL--DPLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYW  926 (1238)
T ss_pred             chhheeccceeEEecccHHHhhHHHHhhhhc--CchhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHH
Confidence            7778888888888888888888888766655  77544 6666555666677766666666541  11  3444455555


Q ss_pred             HHHHHHHHhcccch
Q 000951         1020 SVLIDAISKKENNL 1033 (1211)
Q Consensus      1020 ~~l~~~~~~~~~~~ 1033 (1211)
                      .+....-..+|+.+
T Consensus       927 ~c~te~h~~Ng~~e  940 (1238)
T KOG1127|consen  927 LCATEIHLQNGNIE  940 (1238)
T ss_pred             HHHHHHHHhccchH
Confidence            55544444444433

>KOG2047 consensus mRNA splicing factor [RNA processing and modification]

Probab=99.56  E-value=8.7e-08  Score=105.81  Aligned_cols=571  Identities=12%  Similarity=0.101  Sum_probs=345.9

Q ss_pred             HHHHHHHHHHHhCCChhHHHHHHHHHHh-CCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHH
Q 000951          141 YTCNMMLSFMLKDRRVDSVWLLFDDMLD-RKICPNVATFNILINVSCVEGKLKKAGYLLRKMEESGYVPNIVTYNTLLNW  219 (1211)
Q Consensus       141 ~~~~~ll~~l~~~~~~~~a~~~~~~m~~-~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~  219 (1211)
                      ..|-..+..+.+.+++......|+..+. ..+.-....|..++...-..|-++-+..++++..+.    ++..-+..|..
T Consensus       103 RIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~----~P~~~eeyie~  178 (835)
T KOG2047|consen  103 RIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV----APEAREEYIEY  178 (835)
T ss_pred             HHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc----CHHHHHHHHHH
Confidence            5677788888888888888888887654 223344557888888888888888889999888865    33446777888


Q ss_pred             HHHcCChHHHHHHHHHHHhC------CCCCCHHHHHHHHHHHHhcCChHH---HHHHHHHHHHCCCCCC--HHHHHHHHH
Q 000951          220 YCKKGRYKAAFKLIDCMASK------GIEADVCTYNMFIDDLCRNNRSAK---GYLLLKNMRKRMITPN--EVTYNTLIN  288 (1211)
Q Consensus       220 ~~~~g~~~~A~~~~~~m~~~------g~~~~~~~~~~li~~~~~~g~~~~---A~~~~~~m~~~~~~p~--~~~~~~li~  288 (1211)
                      +++.+++++|.+.+......      ..+.+-..|..+-+...++.+.-.   ...+++.+...  -+|  ...|++|.+
T Consensus       179 L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~r--ftDq~g~Lw~SLAd  256 (835)
T KOG2047|consen  179 LAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRR--FTDQLGFLWCSLAD  256 (835)
T ss_pred             HHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhccc--CcHHHHHHHHHHHH
Confidence            89999999999988877543      234455667777777766655433   33344444433  234  457899999


Q ss_pred             HHHHcCCHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHH--HCCCCcCHhHHHHHHHHHHhcCCh
Q 000951          289 GFVKEGKIQVASRVFDEMSMLNFSPNSITYNELIDGHCCKGNFKEAFRLLAMME--EMGLRPNEVSYGALLNGFCKHAKF  366 (1211)
Q Consensus       289 ~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~--~~g~~p~~~t~~~ll~~~~~~g~~  366 (1211)
                      -|.+.|.++.|..+|++....  ...+.-|+.+-++|..-..-.-+..+=  +.  +.|-+-+...+...+..+-..-+.
T Consensus       257 YYIr~g~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~FEE~~~~~~me--~a~~~~~n~ed~~dl~~~~a~~e~lm~r  332 (835)
T KOG2047|consen  257 YYIRSGLFEKARDVYEEAIQT--VMTVRDFTQIFDAYAQFEESCVAAKME--LADEESGNEEDDVDLELHMARFESLMNR  332 (835)
T ss_pred             HHHHhhhhHHHHHHHHHHHHh--heehhhHHHHHHHHHHHHHHHHHHHHh--hhhhcccChhhhhhHHHHHHHHHHHHhc
Confidence            999999999999999988764  344555677777776533222221111  11  111112222222222222110000


Q ss_pred             HHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC------HhhHHHHHHHHHhcCCHHHHH
Q 000951          367 DLARSLLERMRTNGISISCIAYTSVIDGLCKCGLLDEAMQLFNKMFKDGLNPD------LITFSVLINGFCKVGMTRKAK  440 (1211)
Q Consensus       367 ~~a~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~------~~~~~~li~~~~~~g~~~~A~  440 (1211)
                        ---++..+.-...+.++..|..-+..+  .|+..+-...|.+..+. +.|.      ...|..+...|-..|+.+.|.
T Consensus       333 --r~~~lNsVlLRQn~~nV~eW~kRV~l~--e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aR  407 (835)
T KOG2047|consen  333 --RPLLLNSVLLRQNPHNVEEWHKRVKLY--EGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDAR  407 (835)
T ss_pred             --cchHHHHHHHhcCCccHHHHHhhhhhh--cCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHH
Confidence              000111111111244556666555543  46677777777777654 2332      245777788888888888888


Q ss_pred             HHHHHHHHCCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHH
Q 000951          441 AVLCKMYRDGLVPN---KIIYSTLIYYFCKMGKVTEAMKVYAVMNRNAQGSDHFTCNMLVASLCKGGKVCEAEDYVGHMK  517 (1211)
Q Consensus       441 ~~~~~m~~~g~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~  517 (1211)
                      .+|.+...-..+--   ..+|......-.+..+++.|+++.+.+......|.        ..+...+..-++.     + 
T Consensus       408 vifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~--------~~~yd~~~pvQ~r-----l-  473 (835)
T KOG2047|consen  408 VIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPE--------LEYYDNSEPVQAR-----L-  473 (835)
T ss_pred             HHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchh--------hhhhcCCCcHHHH-----H-
Confidence            88888776532211   22344444444556677777777666544322111        1233333322211     1 


Q ss_pred             hcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCcc-HH
Q 000951          518 RIGVVPNSITFDCMIDGYGTLGDGLKAFSMFDEMVKLGHHPSIFTYGSLLKGLCKGGNLKEAKRFLNSLHHIPSAVD-TV  596 (1211)
Q Consensus       518 ~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~  596 (1211)
                          ..+...|...++.--..|-++.-..+|+++++..+. ++.........+-...-++++.+.+++-+..-..|+ ..
T Consensus       474 ----hrSlkiWs~y~DleEs~gtfestk~vYdriidLria-TPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~d  548 (835)
T KOG2047|consen  474 ----HRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIA-TPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYD  548 (835)
T ss_pred             ----HHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHH
Confidence                123456777777666778888888899999887643 333333344445566778888888888776655444 45


Q ss_pred             HHHHHHHHHHH---cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH--HHhCCChHHHHHHHHHHHHcCCCCCC--HHHH
Q 000951          597 AYNTILAETCK---SGNLWEAIVLLDEMVQFNLLPDRYTYTILLAG--LCRKGKVVSALLFFEKVVSKRTFSPN--NVMF  669 (1211)
Q Consensus       597 ~~~~li~~~~~---~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~--~~~~g~~~~A~~~~~~~~~~~~~~p~--~~~~  669 (1211)
                      +|+..+.-+.+   ...++.|..+|++.++ |++|...-+.-|+.+  --..|....|+++|+++...  +.+.  ...|
T Consensus       549 iW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~--v~~a~~l~my  625 (835)
T KOG2047|consen  549 IWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSA--VKEAQRLDMY  625 (835)
T ss_pred             HHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCHHHHHHHH
Confidence            77776666654   3478899999999998 677655443333322  22468888899999997664  3433  3566


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHH---HHHHHHHHHhcCChHHHHHHHHHHHHCCCCC--CHHHHHHHHH
Q 000951          670 TCLVDGLFKAGQSKAAMHISKIMDKEGVYPDTIA---FNAVMDGFSRMGNMMMANDLLSTMRSRKLCP--SLATYNILLH  744 (1211)
Q Consensus       670 ~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~---~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p--~~~~~~~l~~  744 (1211)
                      +..|.--...=-+.....+|+++++.  -|+..+   .....+.=++.|..+.|+.++.-..+- .+|  +...|.+.-.
T Consensus       626 ni~I~kaae~yGv~~TR~iYekaIe~--Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~-~dPr~~~~fW~twk~  702 (835)
T KOG2047|consen  626 NIYIKKAAEIYGVPRTREIYEKAIES--LPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQI-CDPRVTTEFWDTWKE  702 (835)
T ss_pred             HHHHHHHHHHhCCcccHHHHHHHHHh--CChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhc-CCCcCChHHHHHHHH
Confidence            66664333332344455677777665  344332   223345556788888888888776542 344  5667777766


Q ss_pred             HHHccCC
Q 000951          745 GYSKKKD  751 (1211)
Q Consensus       745 ~~~~~g~  751 (1211)
                      -=.+.||
T Consensus       703 FEvrHGn  709 (835)
T KOG2047|consen  703 FEVRHGN  709 (835)
T ss_pred             HHHhcCC
Confidence            6677777

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=99.55  E-value=3e-14  Score=156.13  Aligned_cols=261  Identities=15%  Similarity=0.108  Sum_probs=111.0

Q ss_pred             HHHHHHHccCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhc
Q 000951          741 ILLHGYSKKKDLLMCSMLLNTMKMEGLLPDKL-TCHSLILGFCETGMLEVGFKFLKKMIAEGTMVDCFTFNVLMRKCCEA  819 (1211)
Q Consensus       741 ~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  819 (1211)
                      .+...+.+.|++++|++++++.......|+.. .|..+.......+++++|++.|++++..+.. ++..+..++.. ...
T Consensus        13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~   90 (280)
T PF13429_consen   13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQD   90 (280)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccc
Confidence            56788889999999999997665543245444 4445566777789999999999999886432 45567777776 688


Q ss_pred             CcHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhcchhhHHHHHHHHHHcCC-CCChhHHHHHHHHHHhcCChhhHHHH
Q 000951          820 GEMGKAFDLFNIMNMLGVVPDTNTQDAIIMGLKRIAAFQESHFVLRGMAEKGL-TPKCTQYITLINGMCRVGNFQGAFKL  898 (1211)
Q Consensus       820 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~g~-~p~~~~~~~l~~~~~~~g~~~eA~~~  898 (1211)
                      +++++|.+++.+.-+.  .+++..+..++..+.+.++++++..+++++....- .++...|..++..+.+.|++++|++.
T Consensus        91 ~~~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~  168 (280)
T PF13429_consen   91 GDPEEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRD  168 (280)
T ss_dssp             -----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHH
T ss_pred             cccccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence            9999999998877553  35666777888889999999999999999876332 23557788899999999999999999


Q ss_pred             HHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCcccCHHHHHHHHHHhhhhCCHHHHHHHHHHHHhcCCC
Q 000951          899 KDEMEALGISSSDVAESAMVRGLAHCGKVEEAMLVLNRMLRMRLVPTIATFTTLIHKFCKEAKFVDALKLKGTMELSGVK  978 (1211)
Q Consensus       899 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~p~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~  978 (1211)
                      |+++++.. |.+..+...++..+...|+.+++.++++...+..+. |+..|..++.+|...|++++|+..|+.....  .
T Consensus       169 ~~~al~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~-~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~--~  244 (280)
T PF13429_consen  169 YRKALELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPD-DPDLWDALAAAYLQLGRYEEALEYLEKALKL--N  244 (280)
T ss_dssp             HHHHHHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HT-SCCHCHHHHHHHHHHT-HHHHHHHHHHHHHH--S
T ss_pred             HHHHHHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcC-HHHHHHHHHHHhccccccccccccccccccc--c
Confidence            99999873 556888889999999999999988888887776533 7778899999999999999999998877665  7


Q ss_pred             Cc-hHHHHHHHHHHHhCCChhHHHHHHHHHHH
Q 000951          979 LD-VVSYNVLISGLCANGDVMPAFELYEEMKH 1009 (1211)
Q Consensus       979 p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 1009 (1211)
                      |+ +.....++.++...|+.++|.+++++..+
T Consensus       245 p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~  276 (280)
T PF13429_consen  245 PDDPLWLLAYADALEQAGRKDEALRLRRQALR  276 (280)
T ss_dssp             TT-HHHHHHHHHHHT-----------------
T ss_pred             cccccccccccccccccccccccccccccccc
Confidence            74 45678888999999999999999887643

>TIGR00540 hemY_coli hemY protein

Probab=99.54  E-value=8.1e-12  Score=144.07  Aligned_cols=129  Identities=9%  Similarity=0.006  Sum_probs=69.9

Q ss_pred             ChhhHHHHHHHHHhhcchhhHHHHHHHHHHcCCCCChhH---HHHHHHHHHhcCChhhHHHHHHHHHHcCCCCch--HHH
Q 000951          840 DTNTQDAIIMGLKRIAAFQESHFVLRGMAEKGLTPKCTQ---YITLINGMCRVGNFQGAFKLKDEMEALGISSSD--VAE  914 (1211)
Q Consensus       840 ~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~g~~p~~~~---~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~--~~~  914 (1211)
                      ++..+..++..+...|++++|...+++.++  ..|+...   ...........++.+.+.+.+++..+. .+.++  ...
T Consensus       262 ~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~--~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~-~p~~~~~~ll  338 (409)
T TIGR00540       262 NIALKIALAEHLIDCDDHDSAQEIIFDGLK--KLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKN-VDDKPKCCIN  338 (409)
T ss_pred             CHHHHHHHHHHHHHCCChHHHHHHHHHHHh--hCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHh-CCCChhHHHH
Confidence            445555555555555666666666666555  4444321   011111222345556666666666544 23344  455


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHhCCcccCHHHHHHHHHHhhhhCCHHHHHHHHHH
Q 000951          915 SAMVRGLAHCGKVEEAMLVLNRMLRMRLVPTIATFTTLIHKFCKEAKFVDALKLKGT  971 (1211)
Q Consensus       915 ~~l~~~~~~~g~~~eA~~~~~~~~~~~~~p~~~~~~~L~~~~~~~g~~~~A~~~~~~  971 (1211)
                      .+++.++.+.|++++|.+.|+++......|+...+..++..+.+.|+.++|.++|+.
T Consensus       339 ~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~  395 (409)
T TIGR00540       339 RALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQD  395 (409)
T ss_pred             HHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            566666666666666666666322222235555556666666667776666666654

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=99.52  E-value=2e-11  Score=139.90  Aligned_cols=250  Identities=9%  Similarity=-0.028  Sum_probs=125.4

Q ss_pred             HccCChHHHHHHHHHHHHCCCCCCHHHHH--HHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCcHHH
Q 000951          747 SKKKDLLMCSMLLNTMKMEGLLPDKLTCH--SLILGFCETGMLEVGFKFLKKMIAEGTMVDCFTFNVLMRKCCEAGEMGK  824 (1211)
Q Consensus       747 ~~~g~~~~A~~~~~~~~~~g~~p~~~~~~--~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~  824 (1211)
                      .+.|+++.|...+.++.+  ..|+.....  .....+...|++++|...++++.+.. +.++.+...+...|.+.|++++
T Consensus       129 ~~~g~~~~A~~~l~~A~~--~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~  205 (398)
T PRK10747        129 QQRGDEARANQHLERAAE--LADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSS  205 (398)
T ss_pred             HHCCCHHHHHHHHHHHHh--cCCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHH
Confidence            445555555555555544  233332111  12344445555555555555554432 2224444445555555555555


Q ss_pred             HHHHHHHHHHCCCCCChh-------hHHHHHHHHHhhcchhhHHHHHHHHHHcCCCC-ChhHHHHHHHHHHhcCChhhHH
Q 000951          825 AFDLFNIMNMLGVVPDTN-------TQDAIIMGLKRIAAFQESHFVLRGMAEKGLTP-KCTQYITLINGMCRVGNFQGAF  896 (1211)
Q Consensus       825 A~~~~~~~~~~~~~~~~~-------~~~~l~~~~~~~g~~~eA~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~eA~  896 (1211)
                      |.+++..+.+....++..       +|..+..........+....+++...+  ..| +......++.++...|+.++|.
T Consensus       206 a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~--~~~~~~~~~~~~A~~l~~~g~~~~A~  283 (398)
T PRK10747        206 LLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSR--KTRHQVALQVAMAEHLIECDDHDTAQ  283 (398)
T ss_pred             HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCH--HHhCCHHHHHHHHHHHHHCCCHHHHH
Confidence            555555554433221111       111111111111112222222222221  112 3455566666666666666666


Q ss_pred             HHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCcccCHHHHHHHHHHhhhhCCHHHHHHHHHHHHhcC
Q 000951          897 KLKDEMEALGISSSDVAESAMVRGLAHCGKVEEAMLVLNRMLRMRLVPTIATFTTLIHKFCKEAKFVDALKLKGTMELSG  976 (1211)
Q Consensus       897 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~p~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~  976 (1211)
                      +.+++..+.  ++++.....  ......++.+++++.+++.++..|. |+..+..+|..+...|+|++|.+.|+...+. 
T Consensus       284 ~~L~~~l~~--~~~~~l~~l--~~~l~~~~~~~al~~~e~~lk~~P~-~~~l~l~lgrl~~~~~~~~~A~~~le~al~~-  357 (398)
T PRK10747        284 QIILDGLKR--QYDERLVLL--IPRLKTNNPEQLEKVLRQQIKQHGD-TPLLWSTLGQLLMKHGEWQEASLAFRAALKQ-  357 (398)
T ss_pred             HHHHHHHhc--CCCHHHHHH--HhhccCCChHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-
Confidence            666666653  334322211  1222346667777777766666554 6666667777777777777777776655544 


Q ss_pred             CCCchHHHHHHHHHHHhCCChhHHHHHHHHHH
Q 000951          977 VKLDVVSYNVLISGLCANGDVMPAFELYEEMK 1008 (1211)
Q Consensus       977 ~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 1008 (1211)
                       .|+...+..++.++.+.|+.++|.+++++-.
T Consensus       358 -~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l  388 (398)
T PRK10747        358 -RPDAYDYAWLADALDRLHKPEEAAAMRRDGL  388 (398)
T ss_pred             -CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence             6666666666667777777777777666543

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=99.52  E-value=2.6e-11  Score=139.02  Aligned_cols=250  Identities=11%  Similarity=-0.038  Sum_probs=113.7

Q ss_pred             HHcCCHHHHHHHHHHHHhCCCCCCHHHHH--HHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCChH
Q 000951          677 FKAGQSKAAMHISKIMDKEGVYPDTIAFN--AVMDGFSRMGNMMMANDLLSTMRSRKLCP-SLATYNILLHGYSKKKDLL  753 (1211)
Q Consensus       677 ~~~g~~~~A~~~~~~~~~~g~~~~~~~~~--~li~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~  753 (1211)
                      ...|+++.|.+.+.++.+.  .|+.....  .....+...|++++|...++++.+.  .| ++.....+...|.+.|+|+
T Consensus       129 ~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~--~P~~~~al~ll~~~~~~~gdw~  204 (398)
T PRK10747        129 QQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAARHGVDKLLEV--APRHPEVLRLAEQAYIRTGAWS  204 (398)
T ss_pred             HHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHHHhHH
Confidence            4555555555555555443  33322211  2234455555555555555555533  33 4555555555555555555


Q ss_pred             HHHHHHHHHHHCCCCCCHH-------HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCcHHHHH
Q 000951          754 MCSMLLNTMKMEGLLPDKL-------TCHSLILGFCETGMLEVGFKFLKKMIAEGTMVDCFTFNVLMRKCCEAGEMGKAF  826 (1211)
Q Consensus       754 ~A~~~~~~~~~~g~~p~~~-------~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~  826 (1211)
                      +|.+++..+.+.+..++..       +|..++.......+.+...++++.+.+. .+.++.....++..+...|+.++|.
T Consensus       205 ~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~  283 (398)
T PRK10747        205 SLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQ  283 (398)
T ss_pred             HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHH
Confidence            5555555555543322110       1111121112222233333333332221 2234444555555555555555555


Q ss_pred             HHHHHHHHCCCCCChhhHHHHHHHHHhhcchhhHHHHHHHHHHcCCCCCh-hHHHHHHHHHHhcCChhhHHHHHHHHHHc
Q 000951          827 DLFNIMNMLGVVPDTNTQDAIIMGLKRIAAFQESHFVLRGMAEKGLTPKC-TQYITLINGMCRVGNFQGAFKLKDEMEAL  905 (1211)
Q Consensus       827 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~eA~~~~~~~~~~  905 (1211)
                      +.+++..+.  .++...  .+..+....++.++++...++.++  ..|+. ..+..++..+.+.|+|++|.+.|+++.+.
T Consensus       284 ~~L~~~l~~--~~~~~l--~~l~~~l~~~~~~~al~~~e~~lk--~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~  357 (398)
T PRK10747        284 QIILDGLKR--QYDERL--VLLIPRLKTNNPEQLEKVLRQQIK--QHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ  357 (398)
T ss_pred             HHHHHHHhc--CCCHHH--HHHHhhccCCChHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence            555555442  222211  111122233555555555555554  44433 34445555555555555555555555543


Q ss_pred             CCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 000951          906 GISSSDVAESAMVRGLAHCGKVEEAMLVLNRMLR  939 (1211)
Q Consensus       906 ~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~  939 (1211)
                        .|+...+..++.++.+.|+.++|.++|++.+.
T Consensus       358 --~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~  389 (398)
T PRK10747        358 --RPDAYDYAWLADALDRLHKPEEAAAMRRDGLM  389 (398)
T ss_pred             --CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence              34444444555555555555555555555443

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=99.51  E-value=3.7e-11  Score=121.27  Aligned_cols=288  Identities=15%  Similarity=0.119  Sum_probs=209.6

Q ss_pred             cCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCH------HHHHHHHHHHHhcCC
Q 000951          714 MGNMMMANDLLSTMRSRKLCP-SLATYNILLHGYSKKKDLLMCSMLLNTMKMEGLLPDK------LTCHSLILGFCETGM  786 (1211)
Q Consensus       714 ~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~------~~~~~l~~~~~~~g~  786 (1211)
                      ..+.++|.++|-+|.+.  .| +..+..+|++.|...|..+.|+.+.+.+.+.   ||.      .+...|..-|...|-
T Consensus        48 s~Q~dKAvdlF~e~l~~--d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s---pdlT~~qr~lAl~qL~~Dym~aGl  122 (389)
T COG2956          48 SNQPDKAVDLFLEMLQE--DPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES---PDLTFEQRLLALQQLGRDYMAAGL  122 (389)
T ss_pred             hcCcchHHHHHHHHHhc--CchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC---CCCchHHHHHHHHHHHHHHHHhhh
Confidence            46677777777777753  34 5666777788888888888888887777754   332      244556777888888


Q ss_pred             hHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHHHHHCCCCCC----hhhHHHHHHHHHhhcchhhHHH
Q 000951          787 LEVGFKFLKKMIAEGTMVDCFTFNVLMRKCCEAGEMGKAFDLFNIMNMLGVVPD----TNTQDAIIMGLKRIAAFQESHF  862 (1211)
Q Consensus       787 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~eA~~  862 (1211)
                      +|.|+++|..+...+ .--......|+.+|-+..+|++|++.-.++.+.+..+.    .--|.-++..+....+.+.|..
T Consensus       123 ~DRAE~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~  201 (389)
T COG2956         123 LDRAEDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARE  201 (389)
T ss_pred             hhHHHHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHH
Confidence            888888888887632 11244667788888888888888888888877554443    2245667777778889999999


Q ss_pred             HHHHHHHcCCCCCh-hHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 000951          863 VLRGMAEKGLTPKC-TQYITLINGMCRVGNFQGAFKLKDEMEALGISSSDVAESAMVRGLAHCGKVEEAMLVLNRMLRMR  941 (1211)
Q Consensus       863 ~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~  941 (1211)
                      ++.++++  .+|+. .+-..+++.....|+++.|.+.++.+.+.+..--+.+...|..+|...|+.++.+.++.++.+..
T Consensus       202 ~l~kAlq--a~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~  279 (389)
T COG2956         202 LLKKALQ--ADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETN  279 (389)
T ss_pred             HHHHHHh--hCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcc
Confidence            9999998  77865 66778899999999999999999999988666667788899999999999999999999999876


Q ss_pred             cccCHHHHHHHHHHhhhhCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHH---HhCCChhHHHHHHHHHHHcCCc
Q 000951          942 LVPTIATFTTLIHKFCKEAKFVDALKLKGTMELSGVKLDVVSYNVLISGL---CANGDVMPAFELYEEMKHKGLC 1013 (1211)
Q Consensus       942 ~~p~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~---~~~g~~~~a~~~~~~~~~~g~~ 1013 (1211)
                      ..++  .-..|...-....-.+.|..........  .|+...++.++...   +..|.|.+..-+.+.|....++
T Consensus       280 ~g~~--~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge~l~  350 (389)
T COG2956         280 TGAD--AELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVGEQLR  350 (389)
T ss_pred             CCcc--HHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccccccchhhhHHHHHHHHHHHHh
Confidence            5444  3344554444444455555543332333  78888777777733   2446788888888887653333

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=99.50  E-value=3.2e-08  Score=109.73  Aligned_cols=475  Identities=15%  Similarity=0.091  Sum_probs=256.1

Q ss_pred             CHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHhHHHHHHHHHHhcCChHHHHHHHH
Q 000951          295 KIQVASRVFDEMSMLNFSPNSITYNELIDGHCCKGNFKEAFRLLAMMEEMGLRPNEVSYGALLNGFCKHAKFDLARSLLE  374 (1211)
Q Consensus       295 ~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~l~~  374 (1211)
                      ++.+|..+|-+-.      +   -..-|..|....++++|+.+-+.   .|.+.-...-.+.++++...|+-+.|-++- 
T Consensus       546 kfk~ae~ifleqn------~---te~aigmy~~lhkwde~i~lae~---~~~p~~eklk~sy~q~l~dt~qd~ka~elk-  612 (1636)
T KOG3616|consen  546 KFKEAEMIFLEQN------A---TEEAIGMYQELHKWDEAIALAEA---KGHPALEKLKRSYLQALMDTGQDEKAAELK-  612 (1636)
T ss_pred             hhhHHHHHHHhcc------c---HHHHHHHHHHHHhHHHHHHHHHh---cCChHHHHHHHHHHHHHHhcCchhhhhhhc-
Confidence            5666666664321      1   12334555556667776665432   232222233345556666666666655431 


Q ss_pred             HHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 000951          375 RMRTNGISISCIAYTSVIDGLCKCGLLDEAMQLFNKMFKDGLNPDLITFSVLINGFCKVGMTRKAKAVLCKMYRDGLVPN  454 (1211)
Q Consensus       375 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~  454 (1211)
                              .+...-.+-|..|.+.|....|.+....=..  +..|......+..++.+..-+++|-.+|+++..    |+
T Consensus       613 --------~sdgd~laaiqlyika~~p~~a~~~a~n~~~--l~~de~il~~ia~alik~elydkagdlfeki~d----~d  678 (1636)
T KOG3616|consen  613 --------ESDGDGLAAIQLYIKAGKPAKAARAALNDEE--LLADEEILEHIAAALIKGELYDKAGDLFEKIHD----FD  678 (1636)
T ss_pred             --------cccCccHHHHHHHHHcCCchHHHHhhcCHHH--hhccHHHHHHHHHHHHhhHHHHhhhhHHHHhhC----HH
Confidence                    1111123456778888887777655421111  123555566666667777777777777766542    11


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHH-HHHHHHHHHcCCChHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 000951          455 KIIYSTLIYYFCKMGKVTEAMKVYAVMNRNAQGSDHFT-CNMLVASLCKGGKVCEAEDYVGHMKRIGVVPNSITFDCMID  533 (1211)
Q Consensus       455 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~  533 (1211)
                           ..+.+|-+-.-+-+|.++-+..    ++..++. -......+...|+++.|+..|-+...         ....|.
T Consensus       679 -----kale~fkkgdaf~kaielarfa----fp~evv~lee~wg~hl~~~~q~daainhfiea~~---------~~kaie  740 (1636)
T KOG3616|consen  679 -----KALECFKKGDAFGKAIELARFA----FPEEVVKLEEAWGDHLEQIGQLDAAINHFIEANC---------LIKAIE  740 (1636)
T ss_pred             -----HHHHHHHcccHHHHHHHHHHhh----CcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhhh---------HHHHHH
Confidence                 1233333333344555543332    1112222 12334455666777777766644331         123345


Q ss_pred             HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHHcCCHHH
Q 000951          534 GYGTLGDGLKAFSMFDEMVKLGHHPSIFTYGSLLKGLCKGGNLKEAKRFLNSLHHIPSAVDTVAYNTILAETCKSGNLWE  613 (1211)
Q Consensus       534 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~  613 (1211)
                      +-.....+.+|+.+++.+....  .-..-|..+.+-|+..|+++.|+++|.+.         ..++.-|.+|.+.|+|++
T Consensus       741 aai~akew~kai~ildniqdqk--~~s~yy~~iadhyan~~dfe~ae~lf~e~---------~~~~dai~my~k~~kw~d  809 (1636)
T KOG3616|consen  741 AAIGAKEWKKAISILDNIQDQK--TASGYYGEIADHYANKGDFEIAEELFTEA---------DLFKDAIDMYGKAGKWED  809 (1636)
T ss_pred             HHhhhhhhhhhHhHHHHhhhhc--cccccchHHHHHhccchhHHHHHHHHHhc---------chhHHHHHHHhccccHHH
Confidence            5566778888888888877643  22334556677788888888888888653         245566788888888888


Q ss_pred             HHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 000951          614 AIVLLDEMVQFNLLPDRYTYTILLAGLCRKGKVVSALLFFEKVVSKRTFSPNNVMFTCLVDGLFKAGQSKAAMHISKIMD  693 (1211)
Q Consensus       614 A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~  693 (1211)
                      |.++-.+..  |.......|.+-..-+-.+|++.+|.++|-.+-     .|+.     -|.+|-+.|..++.+++...- 
T Consensus       810 a~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~-----~p~~-----aiqmydk~~~~ddmirlv~k~-  876 (1636)
T KOG3616|consen  810 AFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIG-----EPDK-----AIQMYDKHGLDDDMIRLVEKH-  876 (1636)
T ss_pred             HHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEcc-----CchH-----HHHHHHhhCcchHHHHHHHHh-
Confidence            888776654  333344456555556677888888887775432     3443     346677777777777665543 


Q ss_pred             hCCCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCH
Q 000951          694 KEGVYPD--TIAFNAVMDGFSRMGNMMMANDLLSTMRSRKLCPSLATYNILLHGYSKKKDLLMCSMLLNTMKMEGLLPDK  771 (1211)
Q Consensus       694 ~~g~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~  771 (1211)
                          .|+  ..+...+..-|-..|++..|+.-|-+..+         |.+-++.|...+-|++|.++-+.   .|-. +.
T Consensus       877 ----h~d~l~dt~~~f~~e~e~~g~lkaae~~flea~d---------~kaavnmyk~s~lw~dayriakt---egg~-n~  939 (1636)
T KOG3616|consen  877 ----HGDHLHDTHKHFAKELEAEGDLKAAEEHFLEAGD---------FKAAVNMYKASELWEDAYRIAKT---EGGA-NA  939 (1636)
T ss_pred             ----ChhhhhHHHHHHHHHHHhccChhHHHHHHHhhhh---------HHHHHHHhhhhhhHHHHHHHHhc---cccc-cH
Confidence                222  23444555566667777777776665542         34445566666666666554321   1211 11


Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHHHHHCCCCCChhhHHHHHHHH
Q 000951          772 LTCHSLILGFCETGMLEVGFKFLKKMIAEGTMVDCFTFNVLMRKCCEAGEMGKAFDLFNIMNMLGVVPDTNTQDAIIMGL  851 (1211)
Q Consensus       772 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~  851 (1211)
                      .-.  .+...+++=--+.|.+++++.   |      ....-++.-+..+.++-|.++-+-..+   .........++.-+
T Consensus       940 ~k~--v~flwaksiggdaavkllnk~---g------ll~~~id~a~d~~afd~afdlari~~k---~k~~~vhlk~a~~l 1005 (1636)
T KOG3616|consen  940 EKH--VAFLWAKSIGGDAAVKLLNKH---G------LLEAAIDFAADNCAFDFAFDLARIAAK---DKMGEVHLKLAMFL 1005 (1636)
T ss_pred             HHH--HHHHHHHhhCcHHHHHHHHhh---h------hHHHHhhhhhcccchhhHHHHHHHhhh---ccCccchhHHhhhh
Confidence            111  111112221223444444331   1      112223334455556666665554433   11233344455556


Q ss_pred             HhhcchhhHHHHHHHHHH
Q 000951          852 KRIAAFQESHFVLRGMAE  869 (1211)
Q Consensus       852 ~~~g~~~eA~~~~~~~~~  869 (1211)
                      ...|++++|-..|-++++
T Consensus      1006 edegk~edaskhyveaik 1023 (1636)
T KOG3616|consen 1006 EDEGKFEDASKHYVEAIK 1023 (1636)
T ss_pred             hhccchhhhhHhhHHHhh
Confidence            667777777777777766

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=99.48  E-value=1.3e-10  Score=117.39  Aligned_cols=289  Identities=11%  Similarity=0.044  Sum_probs=201.6

Q ss_pred             CCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHhcCChHH
Q 000951          643 KGKVVSALLFFEKVVSKRTFSPNNVMFTCLVDGLFKAGQSKAAMHISKIMDKEGVYPD---TIAFNAVMDGFSRMGNMMM  719 (1211)
Q Consensus       643 ~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~---~~~~~~li~~~~~~g~~~~  719 (1211)
                      .++.++|..+|-++.+..  +....+..+|.+.|.+.|..+.|+++++.+.+..--+.   ......|..-|...|-++.
T Consensus        48 s~Q~dKAvdlF~e~l~~d--~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DR  125 (389)
T COG2956          48 SNQPDKAVDLFLEMLQED--PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDR  125 (389)
T ss_pred             hcCcchHHHHHHHHHhcC--chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhH
Confidence            577888999998888853  34466778888999999999999999998876421111   1334556777888999999


Q ss_pred             HHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHH----HHHHHHHHHHhcCChHHHHHHHH
Q 000951          720 ANDLLSTMRSRKLCPSLATYNILLHGYSKKKDLLMCSMLLNTMKMEGLLPDKL----TCHSLILGFCETGMLEVGFKFLK  795 (1211)
Q Consensus       720 A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~----~~~~l~~~~~~~g~~~~A~~~~~  795 (1211)
                      |+.+|..+.+.+ ..-......|+..|....+|++|++.-.++...+-.+..+    .|.-+...+....+.+.|+..++
T Consensus       126 AE~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~  204 (389)
T COG2956         126 AEDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLK  204 (389)
T ss_pred             HHHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence            999999988631 2245667788889999999999999999888866555332    34556667777788889999999


Q ss_pred             HHHHcCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhcchhhHHHHHHHHHHcCCCCC
Q 000951          796 KMIAEGTMVDCFTFNVLMRKCCEAGEMGKAFDLFNIMNMLGVVPDTNTQDAIIMGLKRIAAFQESHFVLRGMAEKGLTPK  875 (1211)
Q Consensus       796 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~g~~p~  875 (1211)
                      ++++.+. ..+.+-..+++.+...|+++.|++.++.+.+.+..--..+...|..+|.+.|+.++.+..+..+.+  ..+.
T Consensus       205 kAlqa~~-~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~--~~~g  281 (389)
T COG2956         205 KALQADK-KCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAME--TNTG  281 (389)
T ss_pred             HHHhhCc-cceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH--ccCC
Confidence            9888532 234455667788889999999999999888754322256677788888888888888888888887  4444


Q ss_pred             hhHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCchHHHHHHHHHHHh---cCCHHHHHHHHHHHHh
Q 000951          876 CTQYITLINGMCRVGNFQGAFKLKDEMEALGISSSDVAESAMVRGLAH---CGKVEEAMLVLNRMLR  939 (1211)
Q Consensus       876 ~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~eA~~~~~~~~~  939 (1211)
                      ...-..+........-.+.|..+..+-+..  .|+...++.+++....   .|...+.+..++.|+.
T Consensus       282 ~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvg  346 (389)
T COG2956         282 ADAELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVG  346 (389)
T ss_pred             ccHHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccccccchhhhHHHHHHHHH
Confidence            444444444444444455555555555443  5666666666654432   2445555665555553

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=99.47  E-value=3.1e-09  Score=117.59  Aligned_cols=463  Identities=12%  Similarity=0.033  Sum_probs=292.4

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHH
Q 000951          528 FDCMIDGYGTLGDGLKAFSMFDEMVKLGHHPSIFTYGSLLKGLCKGGNLKEAKRFLNSLHHIPSAVDTVAYNTILAETCK  607 (1211)
Q Consensus       528 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~  607 (1211)
                      |..++..| ..+++.+.++..+.+++. .+--..|.....-.++..|+.++|........+..+. +.+.|..++-.+-.
T Consensus        11 F~~~lk~y-E~kQYkkgLK~~~~iL~k-~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~-S~vCwHv~gl~~R~   87 (700)
T KOG1156|consen   11 FRRALKCY-ETKQYKKGLKLIKQILKK-FPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLK-SHVCWHVLGLLQRS   87 (700)
T ss_pred             HHHHHHHH-HHHHHHhHHHHHHHHHHh-CCccchhHHhccchhhcccchHHHHHHHHHHhccCcc-cchhHHHHHHHHhh
Confidence            33344433 568888888888888873 2333445554555567789999999988888776554 67888888888888


Q ss_pred             cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 000951          608 SGNLWEAIVLLDEMVQFNLLPDRYTYTILLAGLCRKGKVVSALLFFEKVVSKRTFSPNNVMFTCLVDGLFKAGQSKAAMH  687 (1211)
Q Consensus       608 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~  687 (1211)
                      ..++++|+++|...+..+ +.|...|.-+.-.-.+.++++.....-.+.++..  +.....|..+..++.-.|++..|..
T Consensus        88 dK~Y~eaiKcy~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~--~~~ra~w~~~Avs~~L~g~y~~A~~  164 (700)
T KOG1156|consen   88 DKKYDEAIKCYRNALKIE-KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLR--PSQRASWIGFAVAQHLLGEYKMALE  164 (700)
T ss_pred             hhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh--hhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            899999999999998854 3356667766666677888888888888887742  3346778888888889999999999


Q ss_pred             HHHHHHhCC-CCCCHHHHHHHH------HHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHH
Q 000951          688 ISKIMDKEG-VYPDTIAFNAVM------DGFSRMGNMMMANDLLSTMRSRKLCPSLATYNILLHGYSKKKDLLMCSMLLN  760 (1211)
Q Consensus       688 ~~~~~~~~g-~~~~~~~~~~li------~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~  760 (1211)
                      +.+...+.. ..|+...+....      ....+.|..++|.+.+...... +......--+-...+.+.+++++|..+|.
T Consensus       165 il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~-i~Dkla~~e~ka~l~~kl~~lEeA~~~y~  243 (700)
T KOG1156|consen  165 ILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ-IVDKLAFEETKADLLMKLGQLEEAVKVYR  243 (700)
T ss_pred             HHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH-HHHHHHHhhhHHHHHHHHhhHHhHHHHHH
Confidence            998886554 246665553332      2344578888888777765432 11123333455677889999999999999


Q ss_pred             HHHHCCCCCCHHHHHHHHHHHH-hcCChHHHH-HHHHHHHHcCCCCCHhhHHHHHHHHHhcCcHHHHH-HHHHHHHHCCC
Q 000951          761 TMKMEGLLPDKLTCHSLILGFC-ETGMLEVGF-KFLKKMIAEGTMVDCFTFNVLMRKCCEAGEMGKAF-DLFNIMNMLGV  837 (1211)
Q Consensus       761 ~~~~~g~~p~~~~~~~l~~~~~-~~g~~~~A~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~-~~~~~~~~~~~  837 (1211)
                      .++.  ..||...|+..+..+. +-.+--+++ .+|...-+.  .|....-..+.-....-.++.+.. +++...++.|+
T Consensus       244 ~Ll~--rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~--y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~  319 (700)
T KOG1156|consen  244 RLLE--RNPDNLDYYEGLEKALGKIKDMLEALKALYAILSEK--YPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGV  319 (700)
T ss_pred             HHHh--hCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhc--CcccccchhccHHHhCcchhHHHHHHHHHHHhhcCC
Confidence            9998  5688888876664333 333444444 555555442  222111111111111112333333 33444555554


Q ss_pred             CCChhhHHHHHHHHHhhcchh---hHHHHHHHHHH-cC---------C-CCCh--hHHHHHHHHHHhcCChhhHHHHHHH
Q 000951          838 VPDTNTQDAIIMGLKRIAAFQ---ESHFVLRGMAE-KG---------L-TPKC--TQYITLINGMCRVGNFQGAFKLKDE  901 (1211)
Q Consensus       838 ~~~~~~~~~l~~~~~~~g~~~---eA~~~~~~~~~-~g---------~-~p~~--~~~~~l~~~~~~~g~~~eA~~~~~~  901 (1211)
                      ++   .+..+...|..-.+.+   +-+.-|...+. .|         . .|..  .++..++..+-+.|+++.|..+.+.
T Consensus       320 p~---vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~  396 (700)
T KOG1156|consen  320 PS---VFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDL  396 (700)
T ss_pred             Cc---hhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence            43   3344444443322222   11111111111 11         1 2332  5666778888888999999999998


Q ss_pred             HHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCcccCHHHHHHHHHHhhhhCCHHHHHHHHHHHHhcCCCC--
Q 000951          902 MEALGISSSDVAESAMVRGLAHCGKVEEAMLVLNRMLRMRLVPTIATFTTLIHKFCKEAKFVDALKLKGTMELSGVKL--  979 (1211)
Q Consensus       902 ~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~p~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~p--  979 (1211)
                      ++.+ .|.-.+.|..-+.++...|.+++|..+++.+.+++-. |...-..-+.-..+.++.++|.++.......|..-  
T Consensus       397 AIdH-TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~a-DR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~~~~~  474 (700)
T KOG1156|consen  397 AIDH-TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTA-DRAINSKCAKYMLRANEIEEAEEVLSKFTREGFGAVN  474 (700)
T ss_pred             Hhcc-CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccch-hHHHHHHHHHHHHHccccHHHHHHHHHhhhcccchhh
Confidence            8865 2333445666678888889999999999888887643 54443345555567788888888765554443211  


Q ss_pred             ---ch-HHHHHHHH--HHHhCCChhHHHHHHHH
Q 000951          980 ---DV-VSYNVLIS--GLCANGDVMPAFELYEE 1006 (1211)
Q Consensus       980 ---~~-~~~~~l~~--~~~~~g~~~~a~~~~~~ 1006 (1211)
                         +. ..|+.+-+  +|.+.|+|-.|.+-+..
T Consensus       475 ~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~  507 (700)
T KOG1156|consen  475 NLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHE  507 (700)
T ss_pred             hHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhh
Confidence               11 24555544  78888888777755443

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.45  E-value=7e-09  Score=105.79  Aligned_cols=454  Identities=13%  Similarity=0.119  Sum_probs=290.7

Q ss_pred             HHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCHHH
Q 000951          254 DLCRNNRSAKGYLLLKNMRKRMITPNEVTYNTLINGFVKEGKIQVASRVFDEMSMLNFSPNSITYNELIDGHCCKGNFKE  333 (1211)
Q Consensus       254 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~  333 (1211)
                      -+....++..|+.+++.-...+-+-...+--.+..++...|++++|...+.-+.... .|+...+-.|..++.-.|.+.+
T Consensus        31 dfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y~e  109 (557)
T KOG3785|consen   31 DFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQYIE  109 (557)
T ss_pred             HHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHHHH
Confidence            344566777777777766544433333444456677889999999999998877654 5677778888888888899999


Q ss_pred             HHHHHHHHHHCCCCcCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 000951          334 AFRLLAMMEEMGLRPNEVSYGALLNGFCKHAKFDLARSLLERMRTNGISISCIAYTSVIDGLCKCGLLDEAMQLFNKMFK  413 (1211)
Q Consensus       334 A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~  413 (1211)
                      |..+-...     +.+.-.-..+...--+.++-++...+++.+...     ..-..+|.....-.-.+++|+++|.+.+.
T Consensus       110 A~~~~~ka-----~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~-----~EdqLSLAsvhYmR~HYQeAIdvYkrvL~  179 (557)
T KOG3785|consen  110 AKSIAEKA-----PKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDT-----LEDQLSLASVHYMRMHYQEAIDVYKRVLQ  179 (557)
T ss_pred             HHHHHhhC-----CCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhh-----HHHHHhHHHHHHHHHHHHHHHHHHHHHHh
Confidence            98776543     334445556666667788888777777666543     23344555555556678999999999987


Q ss_pred             CCCCCCHhhHHHHH-HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHH
Q 000951          414 DGLNPDLITFSVLI-NGFCKVGMTRKAKAVLCKMYRDGLVPNKIIYSTLIYYFCKMGKVTEAMKVYAVMNRNAQGSDHFT  492 (1211)
Q Consensus       414 ~g~~p~~~~~~~li-~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~  492 (1211)
                      .  .|+-...|.-+ -+|.+..-++-+.+++.--+++ ++.++.+.+....-..+.=+-..|.+-.+.+.+.+...    
T Consensus       180 d--n~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q-~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~----  252 (557)
T KOG3785|consen  180 D--NPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ-FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQE----  252 (557)
T ss_pred             c--ChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh-CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhccccc----
Confidence            6  46666666544 4577888888888888877765 34455555555544444333333444444444432211    


Q ss_pred             HHHHHHHHHcC-----CChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 000951          493 CNMLVASLCKG-----GKVCEAEDYVGHMKRIGVVPNSITFDCMIDGYGTLGDGLKAFSMFDEMVKLGHHPSIFTYGSLL  567 (1211)
Q Consensus       493 ~~~li~~~~~~-----g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll  567 (1211)
                       -..+.-+++.     ..-+.|++++-.+.+.  -|  .+-..|+--|.+.++..+|..+.+++.-  ..|-......+.
T Consensus       253 -~~f~~~l~rHNLVvFrngEgALqVLP~L~~~--IP--EARlNL~iYyL~q~dVqeA~~L~Kdl~P--ttP~EyilKgvv  325 (557)
T KOG3785|consen  253 -YPFIEYLCRHNLVVFRNGEGALQVLPSLMKH--IP--EARLNLIIYYLNQNDVQEAISLCKDLDP--TTPYEYILKGVV  325 (557)
T ss_pred             -chhHHHHHHcCeEEEeCCccHHHhchHHHhh--Ch--HhhhhheeeecccccHHHHHHHHhhcCC--CChHHHHHHHHH
Confidence             1122233333     2346777777666642  22  3444566678899999999998887632  234333333333


Q ss_pred             HHH-----HcCCCHHHHHHHHHHhhhCCCCccH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 000951          568 KGL-----CKGGNLKEAKRFLNSLHHIPSAVDT-VAYNTILAETCKSGNLWEAIVLLDEMVQFNLLPDRYTYTILLAGLC  641 (1211)
Q Consensus       568 ~~~-----~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~  641 (1211)
                      .+-     .....+.-|.+.|...-..+..-|. .-..++...+.-..++++.+..+..+... +..|...-..+..+++
T Consensus       326 ~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sY-F~NdD~Fn~N~AQAk~  404 (557)
T KOG3785|consen  326 FAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESY-FTNDDDFNLNLAQAKL  404 (557)
T ss_pred             HHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCcchhhhHHHHHHH
Confidence            321     1222456677777776655554442 23456666777777888888888887764 3334444445788899


Q ss_pred             hCCChHHHHHHHHHHHHcCCCCCCHHHHH-HHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHH-HHHHHHHHHhcCChHH
Q 000951          642 RKGKVVSALLFFEKVVSKRTFSPNNVMFT-CLVDGLFKAGQSKAAMHISKIMDKEGVYPDTIA-FNAVMDGFSRMGNMMM  719 (1211)
Q Consensus       642 ~~g~~~~A~~~~~~~~~~~~~~p~~~~~~-~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~-~~~li~~~~~~g~~~~  719 (1211)
                      ..|++.+|.++|-++....  ..|..+|. .|.++|.+.++++.|..++-.+   ..+.+..+ ...+..-|.+++.+--
T Consensus       405 atgny~eaEelf~~is~~~--ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~---~t~~e~fsLLqlIAn~CYk~~eFyy  479 (557)
T KOG3785|consen  405 ATGNYVEAEELFIRISGPE--IKNKILYKSMLARCYIRNKKPQLAWDMMLKT---NTPSERFSLLQLIANDCYKANEFYY  479 (557)
T ss_pred             HhcChHHHHHHHhhhcChh--hhhhHHHHHHHHHHHHhcCCchHHHHHHHhc---CCchhHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999997764432  23455554 4557888999999997766544   32333333 3444567888888888


Q ss_pred             HHHHHHHHHHCCCCCCHHHHH
Q 000951          720 ANDLLSTMRSRKLCPSLATYN  740 (1211)
Q Consensus       720 A~~~~~~~~~~~~~p~~~~~~  740 (1211)
                      |.+.|+.+..  ..|++..|.
T Consensus       480 aaKAFd~lE~--lDP~pEnWe  498 (557)
T KOG3785|consen  480 AAKAFDELEI--LDPTPENWE  498 (557)
T ss_pred             HHHhhhHHHc--cCCCccccC
Confidence            8888888874  466666664

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.45  E-value=1e-08  Score=104.61  Aligned_cols=462  Identities=13%  Similarity=0.079  Sum_probs=235.5

Q ss_pred             HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHHcCCHH
Q 000951          533 DGYGTLGDGLKAFSMFDEMVKLGHHPSIFTYGSLLKGLCKGGNLKEAKRFLNSLHHIPSAVDTVAYNTILAETCKSGNLW  612 (1211)
Q Consensus       533 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~  612 (1211)
                      ..+.+.|++++|+..|.-+.+.. .++......|.-++.-.|.+.+|..+.....+     ++-.-..|...-.+.++-+
T Consensus        65 ~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k-----~pL~~RLlfhlahklndEk  138 (557)
T KOG3785|consen   65 HCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQYIEAKSIAEKAPK-----TPLCIRLLFHLAHKLNDEK  138 (557)
T ss_pred             HHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHHHHHHHHHhhCCC-----ChHHHHHHHHHHHHhCcHH
Confidence            34445566666666655555432 33333333444444445555555555444322     1112222233333444443


Q ss_pred             HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCCHHHHHHHH-HHHHHcCCHHHHHHHHHH
Q 000951          613 EAIVLLDEMVQFNLLPDRYTYTILLAGLCRKGKVVSALLFFEKVVSKRTFSPNNVMFTCLV-DGLFKAGQSKAAMHISKI  691 (1211)
Q Consensus       613 ~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~-~~~~~~g~~~~A~~~~~~  691 (1211)
                      +-....+.+..     ...--.+|.+.....-.+++|+++|++++..   .|+....+..+ -+|.+..-++-+.+++..
T Consensus       139 ~~~~fh~~LqD-----~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~d---n~ey~alNVy~ALCyyKlDYydvsqevl~v  210 (557)
T KOG3785|consen  139 RILTFHSSLQD-----TLEDQLSLASVHYMRMHYQEAIDVYKRVLQD---NPEYIALNVYMALCYYKLDYYDVSQEVLKV  210 (557)
T ss_pred             HHHHHHHHHhh-----hHHHHHhHHHHHHHHHHHHHHHHHHHHHHhc---ChhhhhhHHHHHHHHHhcchhhhHHHHHHH
Confidence            33333333321     1112223444444444566677777766653   34443333322 344555555666666555


Q ss_pred             HHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCH
Q 000951          692 MDKEGVYPDTIAFNAVMDGFSRMGNMMMANDLLSTMRSRKLCPSLATYNILLHGYSKKKDLLMCSMLLNTMKMEGLLPDK  771 (1211)
Q Consensus       692 ~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~  771 (1211)
                      -+.. ++.+....|....-..+.=+-..|+.-...+.+.+-..-+..-..+-.-+.--.+-+.|++++-.+.+  +-|..
T Consensus       211 YL~q-~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~--~IPEA  287 (557)
T KOG3785|consen  211 YLRQ-FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMK--HIPEA  287 (557)
T ss_pred             HHHh-CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHh--hChHh
Confidence            5443 12223333333333333211122232333333211000011111111111223445667766655554  22322


Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHh-----hHHHHHHHHHhcCcHHHHHHHHHHHHHCCCCCCh-hhHH
Q 000951          772 LTCHSLILGFCETGMLEVGFKFLKKMIAEGTMVDCF-----TFNVLMRKCCEAGEMGKAFDLFNIMNMLGVVPDT-NTQD  845 (1211)
Q Consensus       772 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-----~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~  845 (1211)
                        -..|+.-|.++++..+|..+.+....  ..|-..     ++..+++-......+.-|.+.|+-.-+.+..-|+ ..-.
T Consensus       288 --RlNL~iYyL~q~dVqeA~~L~Kdl~P--ttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQ  363 (557)
T KOG3785|consen  288 --RLNLIIYYLNQNDVQEAISLCKDLDP--TTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQ  363 (557)
T ss_pred             --hhhheeeecccccHHHHHHHHhhcCC--CChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchH
Confidence              22355566788888888877766421  112111     2222222222233455667777666554444443 3455


Q ss_pred             HHHHHHHhhcchhhHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCchHHHHHHHHHHHhcC
Q 000951          846 AIIMGLKRIAAFQESHFVLRGMAEKGLTPKCTQYITLINGMCRVGNFQGAFKLKDEMEALGISSSDVAESAMVRGLAHCG  925 (1211)
Q Consensus       846 ~l~~~~~~~g~~~eA~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  925 (1211)
                      ++++.+.-..++++.+.+++.....-.+ |..--..++.+++..|++.+|.++|-++....++.+......++..|.+.+
T Consensus       364 smAs~fFL~~qFddVl~YlnSi~sYF~N-dD~Fn~N~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nk  442 (557)
T KOG3785|consen  364 SMASYFFLSFQFDDVLTYLNSIESYFTN-DDDFNLNLAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNK  442 (557)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcC-cchhhhHHHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcC
Confidence            6777777778888888888887663332 333445688889999999999999888864433334444456778899999


Q ss_pred             CHHHHHHHHHHHHhCCcccCH-HHHHHHHHHhhhhCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhCCChhHHHHHH
Q 000951          926 KVEEAMLVLNRMLRMRLVPTI-ATFTTLIHKFCKEAKFVDALKLKGTMELSGVKLDVVSYNVLISGLCANGDVMPAFELY 1004 (1211)
Q Consensus       926 ~~~eA~~~~~~~~~~~~~p~~-~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~ 1004 (1211)
                      +.+-|.++   ++..+-+.+. .....+++-|.+.|.+=-|-+.|..+..+  +|++..|..         +...+.-++
T Consensus       443 kP~lAW~~---~lk~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~l--DP~pEnWeG---------KRGACaG~f  508 (557)
T KOG3785|consen  443 KPQLAWDM---MLKTNTPSERFSLLQLIANDCYKANEFYYAAKAFDELEIL--DPTPENWEG---------KRGACAGLF  508 (557)
T ss_pred             CchHHHHH---HHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHcc--CCCccccCC---------ccchHHHHH
Confidence            99999888   4444433233 34455667888889888888888877766  777666632         222333445


Q ss_pred             HHHHHcCCccCh-hhHHHHHHHHHhcc
Q 000951         1005 EEMKHKGLCPNS-TTYSVLIDAISKKE 1030 (1211)
Q Consensus      1005 ~~~~~~g~~p~~-~~~~~l~~~~~~~~ 1030 (1211)
                      ..+....-+|-| ....+++..+...+
T Consensus       509 ~~l~~~~~~~~p~~~~rEVvhllr~~~  535 (557)
T KOG3785|consen  509 RQLANHKTDPIPISQMREVVHLLRMKP  535 (557)
T ss_pred             HHHHcCCCCCCchhHHHHHHHHHHhCC
Confidence            555444445555 55555555544433

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.44  E-value=3.5e-09  Score=110.44  Aligned_cols=401  Identities=14%  Similarity=0.061  Sum_probs=267.6

Q ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhC-CChHHHHHHHHHHHHcCCCCCCHHHHHHH
Q 000951          594 DTVAYNTILAETCKSGNLWEAIVLLDEMVQFNLLPDRYTYTILLAGLCRK-GKVVSALLFFEKVVSKRTFSPNNVMFTCL  672 (1211)
Q Consensus       594 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~-g~~~~A~~~~~~~~~~~~~~p~~~~~~~l  672 (1211)
                      +...-...+.+|-..++-+.|+..+.+.....-   ..-.+.|+.-+.+. ++-.++.--+...+...   |-  . ...
T Consensus        96 ~~e~~r~~aecy~~~~n~~~Ai~~l~~~p~t~r---~p~inlMla~l~~~g~r~~~~vl~ykevvrec---p~--a-L~~  166 (564)
T KOG1174|consen   96 DAEQRRRAAECYRQIGNTDMAIETLLQVPPTLR---SPRINLMLARLQHHGSRHKEAVLAYKEVIREC---PM--A-LQV  166 (564)
T ss_pred             cHHHHHHHHHHHHHHccchHHHHHHhcCCcccc---chhHHHHHHHHHhccccccHHHHhhhHHHHhc---ch--H-HHH
Confidence            444555567777788888888877665443211   11123333333332 33334444455544432   11  0 111


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh--cCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHcc
Q 000951          673 VDGLFKAGQSKAAMHISKIMDKEGVYPDTIAFNAVMDGFSR--MGNMMMANDLLSTMRSRKLCP-SLATYNILLHGYSKK  749 (1211)
Q Consensus       673 ~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~--~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~  749 (1211)
                      +.+..+.+ ...+...-..|......|...+....+.++..  .++...|...+-.+.....-| |+.....++..+...
T Consensus       167 i~~ll~l~-v~g~e~~S~~m~~~~~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~  245 (564)
T KOG1174|consen  167 IEALLELG-VNGNEINSLVMHAATVPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYN  245 (564)
T ss_pred             HHHHHHHh-hcchhhhhhhhhheecCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhh
Confidence            11111111 01111111223233334444444444544443  566666666666665443344 788889999999999


Q ss_pred             CChHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCcHHHHHHH
Q 000951          750 KDLLMCSMLLNTMKMEGLLPDKLT-CHSLILGFCETGMLEVGFKFLKKMIAEGTMVDCFTFNVLMRKCCEAGEMGKAFDL  828 (1211)
Q Consensus       750 g~~~~A~~~~~~~~~~g~~p~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~  828 (1211)
                      |+.++|+..|.+.+.  +.|+.++ .-.....+...|+++.-..+...+.... ......|.--+.......+++.|+.+
T Consensus       246 Gdn~~a~~~Fe~~~~--~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~  322 (564)
T KOG1174|consen  246 GDYFQAEDIFSSTLC--ANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNF  322 (564)
T ss_pred             cCchHHHHHHHHHhh--CChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHH
Confidence            999999999999987  6676543 2222344567788888888877776531 12222333333445567789999999


Q ss_pred             HHHHHHCCCCCChhhHHHHHHHHHhhcchhhHHHHHHHHHHcCCCC-ChhHHHHHHHHHHhcCChhhHHHHHHHHHHcCC
Q 000951          829 FNIMNMLGVVPDTNTQDAIIMGLKRIAAFQESHFVLRGMAEKGLTP-KCTQYITLINGMCRVGNFQGAFKLKDEMEALGI  907 (1211)
Q Consensus       829 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~  907 (1211)
                      -++.++.+ +.+...+-.-+..+.+.|+.++|...|+.+..  +.| +...|..|+..|...|++.||...-+...+. +
T Consensus       323 ~eK~I~~~-~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~--Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~  398 (564)
T KOG1174|consen  323 VEKCIDSE-PRNHEALILKGRLLIALERHTQAVIAFRTAQM--LAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-F  398 (564)
T ss_pred             HHHHhccC-cccchHHHhccHHHHhccchHHHHHHHHHHHh--cchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-h
Confidence            99888643 23455666667888999999999999999998  888 4699999999999999999999998888754 4


Q ss_pred             CCchHHHHHHH-HHHHhcCC-HHHHHHHHHHHHhCCcccCHHHHHHHHHHhhhhCCHHHHHHHHHHHHhcCCCCchHHHH
Q 000951          908 SSSDVAESAMV-RGLAHCGK-VEEAMLVLNRMLRMRLVPTIATFTTLIHKFCKEAKFVDALKLKGTMELSGVKLDVVSYN  985 (1211)
Q Consensus       908 ~~~~~~~~~l~-~~~~~~g~-~~eA~~~~~~~~~~~~~p~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~  985 (1211)
                      +.+..++..++ .++.-... .++|.+++++.+..+|. -..+.+.++..+...|++++++.+++.....  -||..-.+
T Consensus       399 ~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~-Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~--~~D~~LH~  475 (564)
T KOG1174|consen  399 QNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPI-YTPAVNLIAELCQVEGPTKDIIKLLEKHLII--FPDVNLHN  475 (564)
T ss_pred             hcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCc-cHHHHHHHHHHHHhhCccchHHHHHHHHHhh--ccccHHHH
Confidence            66667776664 44444333 78899999999997754 5667788999999999999999998765544  78988999


Q ss_pred             HHHHHHHhCCChhHHHHHHHHHHHcCCccCh
Q 000951          986 VLISGLCANGDVMPAFELYEEMKHKGLCPNS 1016 (1211)
Q Consensus       986 ~l~~~~~~~g~~~~a~~~~~~~~~~g~~p~~ 1016 (1211)
                      .|+..+.+.+.+.+|...|...+.  +.|+.
T Consensus       476 ~Lgd~~~A~Ne~Q~am~~y~~ALr--~dP~~  504 (564)
T KOG1174|consen  476 HLGDIMRAQNEPQKAMEYYYKALR--QDPKS  504 (564)
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHh--cCccc
Confidence            999999999999999999998854  56666

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=99.43  E-value=6e-09  Score=115.39  Aligned_cols=470  Identities=14%  Similarity=0.099  Sum_probs=243.7

Q ss_pred             HcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 000951          467 KMGKVTEAMKVYAVMNRNAQGSDHFTCNMLVASLCKGGKVCEAEDYVGHMKRIGVVPNSITFDCMIDGYGTLGDGLKAFS  546 (1211)
Q Consensus       467 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~  546 (1211)
                      ..+++...++..+.+++..+. ...+.....-.++..|+-++|......-....+ .+.+.|..+.-.+....++++|++
T Consensus        19 E~kQYkkgLK~~~~iL~k~~e-HgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~-~S~vCwHv~gl~~R~dK~Y~eaiK   96 (700)
T KOG1156|consen   19 ETKQYKKGLKLIKQILKKFPE-HGESLAMKGLTLNCLGKKEEAYELVRLGLRNDL-KSHVCWHVLGLLQRSDKKYDEAIK   96 (700)
T ss_pred             HHHHHHhHHHHHHHHHHhCCc-cchhHHhccchhhcccchHHHHHHHHHHhccCc-ccchhHHHHHHHHhhhhhHHHHHH
Confidence            455666666666666553222 333333344445556666666666555554332 245667777766666777777777


Q ss_pred             HHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC-
Q 000951          547 MFDEMVKLGHHPSIFTYGSLLKGLCKGGNLKEAKRFLNSLHHIPSAVDTVAYNTILAETCKSGNLWEAIVLLDEMVQFN-  625 (1211)
Q Consensus       547 ~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-  625 (1211)
                      .|...+..+ +.|...+.-+.-.-...++++........+.+..+. ....|..++..+.-.|+...|..+.+...+.. 
T Consensus        97 cy~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~-~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~  174 (700)
T KOG1156|consen   97 CYRNALKIE-KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPS-QRASWIGFAVAQHLLGEYKMALEILEEFEKTQN  174 (700)
T ss_pred             HHHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            777776643 334444544444444555555555555555544333 44556666666666677777777776666532 


Q ss_pred             CCCCHHHHHHHHH------HHHhCCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC
Q 000951          626 LLPDRYTYTILLA------GLCRKGKVVSALLFFEKVVSKRTFSPNNVMFTCLVDGLFKAGQSKAAMHISKIMDKEGVYP  699 (1211)
Q Consensus       626 ~~p~~~~~~~li~------~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~  699 (1211)
                      -.|+...+.....      .....|..++|++.+.+-...  +......-..-.+.+.+.+++++|..++..++..  .|
T Consensus       175 ~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~--i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r--nP  250 (700)
T KOG1156|consen  175 TSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ--IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLER--NP  250 (700)
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH--HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh--Cc
Confidence            1344444333222      233455555555554443221  1111112233334455556666666666555544  34


Q ss_pred             CHHHHHHHH-HHHHhcCChHHHH-HHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 000951          700 DTIAFNAVM-DGFSRMGNMMMAN-DLLSTMRSRKLCPSLATYNILLHGYSKKKDLLMCSMLLNTMKMEGLLPDKLTCHSL  777 (1211)
Q Consensus       700 ~~~~~~~li-~~~~~~g~~~~A~-~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l  777 (1211)
                      |...|.-.. .++.+--+.-++. .+|....+. ++-....-..=++......-.+..-.++..+++.|+.+--..   +
T Consensus       251 dn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~-y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf~d---l  326 (700)
T KOG1156|consen  251 DNLDYYEGLEKALGKIKDMLEALKALYAILSEK-YPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSVFKD---L  326 (700)
T ss_pred             hhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhc-CcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCchhhh---h
Confidence            444333322 2222222222222 333333321 100000000000001111112222233444444444331111   1


Q ss_pred             HHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHHHHHCCCCCC--hhhHHHHHHHHHhhc
Q 000951          778 ILGFCETGMLEVGFKFLKKMIAEGTMVDCFTFNVLMRKCCEAGEMGKAFDLFNIMNMLGVVPD--TNTQDAIIMGLKRIA  855 (1211)
Q Consensus       778 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g  855 (1211)
                      .+.|-...   +.- +.++...        .|...+... ...+....-+     .   -+|.  .+++..++..|...|
T Consensus       327 ~SLyk~p~---k~~-~le~Lvt--------~y~~~L~~~-~~f~~~D~~~-----~---E~PttllWt~y~laqh~D~~g  385 (700)
T KOG1156|consen  327 RSLYKDPE---KVA-FLEKLVT--------SYQHSLSGT-GMFNFLDDGK-----Q---EPPTTLLWTLYFLAQHYDKLG  385 (700)
T ss_pred             HHHHhchh---HhH-HHHHHHH--------HHHhhcccc-cCCCcccccc-----c---CCchHHHHHHHHHHHHHHHcc
Confidence            11121111   000 2222111        010000000 0000000000     0   1344  345566778888999


Q ss_pred             chhhHHHHHHHHHHcCCCCCh-hHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHH
Q 000951          856 AFQESHFVLRGMAEKGLTPKC-TQYITLINGMCRVGNFQGAFKLKDEMEALGISSSDVAESAMVRGLAHCGKVEEAMLVL  934 (1211)
Q Consensus       856 ~~~eA~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~  934 (1211)
                      +++.|..+.+.+++  -.|.. +-|..-+..+.++|++++|...++++.+.+ .+|..+...-+.-..++.+.++|.++.
T Consensus       386 ~~~~A~~yId~AId--HTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~INsKcAKYmLrAn~i~eA~~~~  462 (700)
T KOG1156|consen  386 DYEVALEYIDLAID--HTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAINSKCAKYMLRANEIEEAEEVL  462 (700)
T ss_pred             cHHHHHHHHHHHhc--cCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHccccHHHHHHH
Confidence            99999999999988  77875 788899999999999999999999998875 566666667777788999999999999


Q ss_pred             HHHHhCCccc--C----HHHHHHH--HHHhhhhCCHHHHHHHHHHH
Q 000951          935 NRMLRMRLVP--T----IATFTTL--IHKFCKEAKFVDALKLKGTM  972 (1211)
Q Consensus       935 ~~~~~~~~~p--~----~~~~~~L--~~~~~~~g~~~~A~~~~~~~  972 (1211)
                      .+..+.+...  |    .-+|..+  |.+|.++|++.+|++=|..+
T Consensus       463 skFTr~~~~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i  508 (700)
T KOG1156|consen  463 SKFTREGFGAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEI  508 (700)
T ss_pred             HHhhhcccchhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhH
Confidence            8888766421  1    1345444  45688889998888755543

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=99.41  E-value=7.7e-10  Score=120.16  Aligned_cols=389  Identities=14%  Similarity=0.097  Sum_probs=202.9

Q ss_pred             HHHHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhCCC
Q 000951          567 LKGLCKGGNLKEAKRFLNSLHHIPSAVDTVAYNTILAETCKSGNLWEAIVLLDEMVQFNLLPDRY-TYTILLAGLCRKGK  645 (1211)
Q Consensus       567 l~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~-~~~~li~~~~~~g~  645 (1211)
                      .++.+..|+++.|...|...+...+. +.+.|+--..+|.+.|++++|++--.+-++  +.|+.. .|.....++.-.|+
T Consensus         9 gnaa~s~~d~~~ai~~~t~ai~l~p~-nhvlySnrsaa~a~~~~~~~al~da~k~~~--l~p~w~kgy~r~Gaa~~~lg~   85 (539)
T KOG0548|consen    9 GNAAFSSGDFETAIRLFTEAIMLSPT-NHVLYSNRSAAYASLGSYEKALKDATKTRR--LNPDWAKGYSRKGAALFGLGD   85 (539)
T ss_pred             HHhhcccccHHHHHHHHHHHHccCCC-ccchhcchHHHHHHHhhHHHHHHHHHHHHh--cCCchhhHHHHhHHHHHhccc
Confidence            34567789999999999999988877 888898889999999999999887777776  457754 58888888899999


Q ss_pred             hHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCCHHHH---HHHHHHHHhCC---CCCCHHHHHHHHHHHHh------
Q 000951          646 VVSALLFFEKVVSKRTFSPNNVMFTCLVDGLFKAGQSKAA---MHISKIMDKEG---VYPDTIAFNAVMDGFSR------  713 (1211)
Q Consensus       646 ~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A---~~~~~~~~~~g---~~~~~~~~~~li~~~~~------  713 (1211)
                      +++|+..|.+-++..  +.|...++.+.+++.......+.   -.++..+....   .......|..++..+-+      
T Consensus        86 ~~eA~~ay~~GL~~d--~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~  163 (539)
T KOG0548|consen   86 YEEAILAYSEGLEKD--PSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLK  163 (539)
T ss_pred             HHHHHHHHHHHhhcC--CchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhh
Confidence            999999999998853  44567778888777211000000   00111110000   00000112222211111      


Q ss_pred             ----cCChHHHHHHHHHHH-----HC-------CCCC------------C----------HHHHHHHHHHHHccCChHHH
Q 000951          714 ----MGNMMMANDLLSTMR-----SR-------KLCP------------S----------LATYNILLHGYSKKKDLLMC  755 (1211)
Q Consensus       714 ----~g~~~~A~~~~~~~~-----~~-------~~~p------------~----------~~~~~~l~~~~~~~g~~~~A  755 (1211)
                          -.++..|...+....     ..       ...|            |          ..-...++++..+..+++.|
T Consensus       164 ~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a  243 (539)
T KOG0548|consen  164 LYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETA  243 (539)
T ss_pred             cccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHH
Confidence                000111111111000     00       0000            0          01133445555555666666


Q ss_pred             HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC------HhhHHHHHHHHHhcCcHHHHHHHH
Q 000951          756 SMLLNTMKMEGLLPDKLTCHSLILGFCETGMLEVGFKFLKKMIAEGTMVD------CFTFNVLMRKCCEAGEMGKAFDLF  829 (1211)
Q Consensus       756 ~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~------~~~~~~l~~~~~~~g~~~~A~~~~  829 (1211)
                      ++.|...++  +..+..-++...-+|...|.+.+.+.......+.|...-      ......++.+|.+.++++.|+..|
T Consensus       244 ~q~y~~a~e--l~~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~~~ai~~~  321 (539)
T KOG0548|consen  244 IQHYAKALE--LATDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKREDYEGAIKYY  321 (539)
T ss_pred             HHHHHHHHh--HhhhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHH
Confidence            666666655  222222233334555555665555555555544432210      001111233455555566666666


Q ss_pred             HHHHHCCCCCChhhHHHHHHHHHhhcchhhHHHHHHHHHHcCCCCCh-hHHHHHHHHHHhcCChhhHHHHHHHHHHcCCC
Q 000951          830 NIMNMLGVVPDTNTQDAIIMGLKRIAAFQESHFVLRGMAEKGLTPKC-TQYITLINGMCRVGNFQGAFKLKDEMEALGIS  908 (1211)
Q Consensus       830 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~  908 (1211)
                      ++.+..-..|+.         ..+....++++.......-  +.|+. .-...-++.+.+.|+|.+|++.|.+++... |
T Consensus       322 ~kaLte~Rt~~~---------ls~lk~~Ek~~k~~e~~a~--~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~-P  389 (539)
T KOG0548|consen  322 QKALTEHRTPDL---------LSKLKEAEKALKEAERKAY--INPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRD-P  389 (539)
T ss_pred             HHHhhhhcCHHH---------HHHHHHHHHHHHHHHHHHh--hChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC-C
Confidence            555432222211         1122333444444333333  44432 223333555556666666666666665543 4


Q ss_pred             CchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCcccCHHHHHHHHHHhhhhCCHHHHHHHHHHHHhc
Q 000951          909 SSDVAESAMVRGLAHCGKVEEAMLVLNRMLRMRLVPTIATFTTLIHKFCKEAKFVDALKLKGTMELS  975 (1211)
Q Consensus       909 ~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~p~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~  975 (1211)
                      .|...|...+.+|.+.|.+.+|+.-.+..++.+|+ ....|..-+.++....+|+.|.+.|....+.
T Consensus       390 ~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~-~~kgy~RKg~al~~mk~ydkAleay~eale~  455 (539)
T KOG0548|consen  390 EDARLYSNRAACYLKLGEYPEALKDAKKCIELDPN-FIKAYLRKGAALRAMKEYDKALEAYQEALEL  455 (539)
T ss_pred             chhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCch-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            45555556666666666666666666666665543 5555555566666666666666665544433

>PRK12370 invasion protein regulator; Provisional

Probab=99.40  E-value=5.4e-11  Score=142.63  Aligned_cols=246  Identities=16%  Similarity=0.086  Sum_probs=145.1

Q ss_pred             ChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHH---------hcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcC
Q 000951          751 DLLMCSMLLNTMKMEGLLPDK-LTCHSLILGFC---------ETGMLEVGFKFLKKMIAEGTMVDCFTFNVLMRKCCEAG  820 (1211)
Q Consensus       751 ~~~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~~---------~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  820 (1211)
                      ++++|+..|+++++  ..|+. ..|..+..+|.         ..+++++|...++++++.+ +.+..++..++.++...|
T Consensus       276 ~~~~A~~~~~~Al~--ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~g  352 (553)
T PRK12370        276 SLQQALKLLTQCVN--MSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD-HNNPQALGLLGLINTIHS  352 (553)
T ss_pred             HHHHHHHHHHHHHh--cCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcc
Confidence            35667777777766  45543 33444433332         2234677777777777642 224556666777777777


Q ss_pred             cHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhcchhhHHHHHHHHHHcCCCCCh-hHHHHHHHHHHhcCChhhHHHHH
Q 000951          821 EMGKAFDLFNIMNMLGVVPDTNTQDAIIMGLKRIAAFQESHFVLRGMAEKGLTPKC-TQYITLINGMCRVGNFQGAFKLK  899 (1211)
Q Consensus       821 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~eA~~~~  899 (1211)
                      ++++|+..|+++++.+ +.+...|..++..|...|++++|+..++++++  ++|+. ..+..++.++...|++++|...+
T Consensus       353 ~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~--l~P~~~~~~~~~~~~~~~~g~~eeA~~~~  429 (553)
T PRK12370        353 EYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLK--LDPTRAAAGITKLWITYYHTGIDDAIRLG  429 (553)
T ss_pred             CHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCChhhHHHHHHHHHhccCHHHHHHHH
Confidence            7777777777777643 22355667777777777777777777777777  66653 23334444555667777777777


Q ss_pred             HHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCcccCHHHHHHHHHHhhhhCCHHHHHHHHHHHHhc-CCC
Q 000951          900 DEMEALGISSSDVAESAMVRGLAHCGKVEEAMLVLNRMLRMRLVPTIATFTTLIHKFCKEAKFVDALKLKGTMELS-GVK  978 (1211)
Q Consensus       900 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~p~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~-~~~  978 (1211)
                      +++.+...+.++..+..++.++...|++++|...++++....+. +...++.++..|...|+  +|...++.+.+. ...
T Consensus       430 ~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~--~a~~~l~~ll~~~~~~  506 (553)
T PRK12370        430 DELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEIT-GLIAVNLLYAEYCQNSE--RALPTIREFLESEQRI  506 (553)
T ss_pred             HHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccch-hHHHHHHHHHHHhccHH--HHHHHHHHHHHHhhHh
Confidence            77765432334555666777777777777777777776554433 45556666666666663  555544433321 112


Q ss_pred             CchHHHHHHHHHHHhCCChhHHHHHHHHHH
Q 000951          979 LDVVSYNVLISGLCANGDVMPAFELYEEMK 1008 (1211)
Q Consensus       979 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 1008 (1211)
                      |....+  ....|+-.|+-+.+..+ +++.
T Consensus       507 ~~~~~~--~~~~~~~~g~~~~~~~~-~~~~  533 (553)
T PRK12370        507 DNNPGL--LPLVLVAHGEAIAEKMW-NKFK  533 (553)
T ss_pred             hcCchH--HHHHHHHHhhhHHHHHH-HHhh
Confidence            222222  44455556666666555 4443

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=99.40  E-value=1.2e-09  Score=114.54  Aligned_cols=281  Identities=13%  Similarity=0.113  Sum_probs=143.6

Q ss_pred             cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHH
Q 000951          679 AGQSKAAMHISKIMDKEGVYPDTIAFNAVMDGFSRMGNMMMANDLLSTMRSRKLCPSLATYNILLHGYSKKKDLLMCSML  758 (1211)
Q Consensus       679 ~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~  758 (1211)
                      .|+|.+|++......+.+-.| ...|..-+.+--+.|+.+.+..++.++.+..-.++.....+........|+++.|..-
T Consensus        97 eG~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~  175 (400)
T COG3071          97 EGDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN  175 (400)
T ss_pred             cCcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence            466777776666655554222 2333444455556777777777777776542234555566666677777777777777


Q ss_pred             HHHHHHCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH-------hhHHHHHHHHHhcCcHHHHHHHHH
Q 000951          759 LNTMKMEGLLP-DKLTCHSLILGFCETGMLEVGFKFLKKMIAEGTMVDC-------FTFNVLMRKCCEAGEMGKAFDLFN  830 (1211)
Q Consensus       759 ~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~A~~~~~  830 (1211)
                      ..++.+.  .| ..........+|.+.|+|.....+..++.+.+.-.|+       .+++.+++=....+..+.-...|+
T Consensus       176 v~~ll~~--~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~  253 (400)
T COG3071         176 VDQLLEM--TPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWK  253 (400)
T ss_pred             HHHHHHh--CcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHH
Confidence            7777763  34 3344555567777777777777777777776554442       233333332222222222233444


Q ss_pred             HHHHCCCCCChhhHHHHHHHHHhhcchhhHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCc
Q 000951          831 IMNMLGVVPDTNTQDAIIMGLKRIAAFQESHFVLRGMAEKGLTPKCTQYITLINGMCRVGNFQGAFKLKDEMEALGISSS  910 (1211)
Q Consensus       831 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~  910 (1211)
                      .... ..+.++..-.+++.-+.+.|..++|.++..+.++.+.+|....+    -.+.+.++.+.-++..++..+. .+.+
T Consensus       254 ~~pr-~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~~~----~~~l~~~d~~~l~k~~e~~l~~-h~~~  327 (400)
T COG3071         254 NQPR-KLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLCRL----IPRLRPGDPEPLIKAAEKWLKQ-HPED  327 (400)
T ss_pred             hccH-HhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHHHH----HhhcCCCCchHHHHHHHHHHHh-CCCC
Confidence            3322 12233444444555555555555555555555554444441111    1223344444444444444322 1233


Q ss_pred             hHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCcccCHHHHHHHHHHhhhhCCHHHHHHHHH
Q 000951          911 DVAESAMVRGLAHCGKVEEAMLVLNRMLRMRLVPTIATFTTLIHKFCKEAKFVDALKLKG  970 (1211)
Q Consensus       911 ~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~p~~~~~~~L~~~~~~~g~~~~A~~~~~  970 (1211)
                      +..+..+|..|.+.+.|.+|.+.|+.++...  |+...|..++.++.+.|+.++|.++++
T Consensus       328 p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~--~s~~~~~~la~~~~~~g~~~~A~~~r~  385 (400)
T COG3071         328 PLLLSTLGRLALKNKLWGKASEALEAALKLR--PSASDYAELADALDQLGEPEEAEQVRR  385 (400)
T ss_pred             hhHHHHHHHHHHHhhHHHHHHHHHHHHHhcC--CChhhHHHHHHHHHHcCChHHHHHHHH
Confidence            3444444444444444444444444444432  344444444444444444444444444

>PRK12370 invasion protein regulator; Provisional

Probab=99.39  E-value=7.2e-11  Score=141.56  Aligned_cols=215  Identities=13%  Similarity=0.079  Sum_probs=167.9

Q ss_pred             CChHHHHHHHHHHHHcCCCCC-HhhHHHHHHHHHh---------cCcHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhh
Q 000951          785 GMLEVGFKFLKKMIAEGTMVD-CFTFNVLMRKCCE---------AGEMGKAFDLFNIMNMLGVVPDTNTQDAIIMGLKRI  854 (1211)
Q Consensus       785 g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~---------~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  854 (1211)
                      +.+++|+..++++++.  .|+ ...+..++.+|..         .+++++|.+.++++++.+ +.+...|..++.++...
T Consensus       275 ~~~~~A~~~~~~Al~l--dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~  351 (553)
T PRK12370        275 YSLQQALKLLTQCVNM--SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD-HNNPQALGLLGLINTIH  351 (553)
T ss_pred             HHHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHc
Confidence            4568999999999984  454 4566666665543         245889999999999854 33578889999999999


Q ss_pred             cchhhHHHHHHHHHHcCCCCCh-hHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHH
Q 000951          855 AAFQESHFVLRGMAEKGLTPKC-TQYITLINGMCRVGNFQGAFKLKDEMEALGISSSDVAESAMVRGLAHCGKVEEAMLV  933 (1211)
Q Consensus       855 g~~~eA~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~  933 (1211)
                      |++++|+..|+++++  .+|+. ..+..++.++...|++++|+..++++++.+ |.+...+..++.++...|++++|+..
T Consensus       352 g~~~~A~~~~~~Al~--l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~-P~~~~~~~~~~~~~~~~g~~eeA~~~  428 (553)
T PRK12370        352 SEYIVGSLLFKQANL--LSPISADIKYYYGWNLFMAGQLEEALQTINECLKLD-PTRAAAGITKLWITYYHTGIDDAIRL  428 (553)
T ss_pred             cCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHhccCHHHHHHH
Confidence            999999999999999  88874 778889999999999999999999999874 33333444555567778999999999


Q ss_pred             HHHHHhCCcccCHHHHHHHHHHhhhhCCHHHHHHHHHHHHhcCCCCchH-HHHHHHHHHHhCCChhHHHHHHHHHHH
Q 000951          934 LNRMLRMRLVPTIATFTTLIHKFCKEAKFVDALKLKGTMELSGVKLDVV-SYNVLISGLCANGDVMPAFELYEEMKH 1009 (1211)
Q Consensus       934 ~~~~~~~~~~p~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~ 1009 (1211)
                      ++++++..++.++..+..++.++...|++++|...++.+...  .|+.. ..+.++..|...|  +.|...++.+.+
T Consensus       429 ~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~  501 (553)
T PRK12370        429 GDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ--EITGLIAVNLLYAEYCQNS--ERALPTIREFLE  501 (553)
T ss_pred             HHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc--cchhHHHHHHHHHHHhccH--HHHHHHHHHHHH
Confidence            999987653326777888999999999999999998776544  66544 5566777777777  577777776654

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=99.39  E-value=1.6e-10  Score=130.68  Aligned_cols=236  Identities=19%  Similarity=0.161  Sum_probs=160.8

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHHc-----CC-CCCHh-hHHHHHHHHHhcCcHHHHHHHHHHHHH-----CCCC-C
Q 000951          773 TCHSLILGFCETGMLEVGFKFLKKMIAE-----GT-MVDCF-TFNVLMRKCCEAGEMGKAFDLFNIMNM-----LGVV-P  839 (1211)
Q Consensus       773 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~-~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~-~  839 (1211)
                      +...+...|...|++++|...++.+++.     |. .|... ..+.++..|...+++.+|+.+|++++.     .|-. |
T Consensus       201 ~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~  280 (508)
T KOG1840|consen  201 TLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHP  280 (508)
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCH
Confidence            4444666777777777777777776653     10 12222 233466677777888888777777753     1111 1


Q ss_pred             -ChhhHHHHHHHHHhhcchhhHHHHHHHHHH-----cCCCCC-h-hHHHHHHHHHHhcCChhhHHHHHHHHHHc---CCC
Q 000951          840 -DTNTQDAIIMGLKRIAAFQESHFVLRGMAE-----KGLTPK-C-TQYITLINGMCRVGNFQGAFKLKDEMEAL---GIS  908 (1211)
Q Consensus       840 -~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~-----~g~~p~-~-~~~~~l~~~~~~~g~~~eA~~~~~~~~~~---~~~  908 (1211)
                       -..+++.|+.+|.+.|+++||..+++.+++     .|..+. . ..+..++..++..+++++|..+++++.+.   -+.
T Consensus       281 ~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g  360 (508)
T KOG1840|consen  281 AVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPG  360 (508)
T ss_pred             HHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhcc
Confidence             145677777788888888888887777664     223332 2 55777888888999999999998888542   111


Q ss_pred             C----chHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC----c--cc-CHHHHHHHHHHhhhhCCHHHHHHHHHHH----H
Q 000951          909 S----SDVAESAMVRGLAHCGKVEEAMLVLNRMLRMR----L--VP-TIATFTTLIHKFCKEAKFVDALKLKGTM----E  973 (1211)
Q Consensus       909 ~----~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~----~--~p-~~~~~~~L~~~~~~~g~~~~A~~~~~~~----~  973 (1211)
                      +    -..++..|+..|...|++++|.++|+++++..    .  .+ ....++.|+..|.+.+++++|.++|...    +
T Consensus       361 ~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~  440 (508)
T KOG1840|consen  361 EDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMK  440 (508)
T ss_pred             ccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHH
Confidence            2    23467889999999999999999999988742    1  11 3456788888998889998888887643    3


Q ss_pred             hcCCC-CchH-HHHHHHHHHHhCCChhHHHHHHHHHH
Q 000951          974 LSGVK-LDVV-SYNVLISGLCANGDVMPAFELYEEMK 1008 (1211)
Q Consensus       974 ~~~~~-p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~ 1008 (1211)
                      ..|.. |+.. +|.+|+..|.+.|+++.|.++.+.+.
T Consensus       441 ~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~  477 (508)
T KOG1840|consen  441 LCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL  477 (508)
T ss_pred             HhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence            44322 3433 77889999999999999999887653

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.37  E-value=3e-08  Score=103.64  Aligned_cols=298  Identities=10%  Similarity=-0.041  Sum_probs=209.6

Q ss_pred             HHhCCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHH-HHHHHHHhcCChH
Q 000951          640 LCRKGKVVSALLFFEKVVSKRTFSPNNVMFTCLVDGLFKAGQSKAAMHISKIMDKEGVYPDTIAFN-AVMDGFSRMGNMM  718 (1211)
Q Consensus       640 ~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~-~li~~~~~~g~~~  718 (1211)
                      .+-.++-..|...+-.+.....++-|......+.+.+...|+.++|+..|++..-.  .|+...-. .-.-.+.+.|+++
T Consensus       206 q~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~--dpy~i~~MD~Ya~LL~~eg~~e  283 (564)
T KOG1174|consen  206 QMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCA--NPDNVEAMDLYAVLLGQEGGCE  283 (564)
T ss_pred             HHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhC--ChhhhhhHHHHHHHHHhccCHh
Confidence            34456666666666555555545666777888889999999999999999888643  34332211 1122345678888


Q ss_pred             HHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHH
Q 000951          719 MANDLLSTMRSRKLCPSLATYNILLHGYSKKKDLLMCSMLLNTMKMEGLLPDK-LTCHSLILGFCETGMLEVGFKFLKKM  797 (1211)
Q Consensus       719 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~  797 (1211)
                      .-..+...+.... .-....|..-+......++++.|+.+-.+.++  ..|+. ..+..-+.++...++.++|.-.|+.+
T Consensus       284 ~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~--~~~r~~~alilKG~lL~~~~R~~~A~IaFR~A  360 (564)
T KOG1174|consen  284 QDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCID--SEPRNHEALILKGRLLIALERHTQAVIAFRTA  360 (564)
T ss_pred             hHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhc--cCcccchHHHhccHHHHhccchHHHHHHHHHH
Confidence            8887777776431 12344455555566677889999988888887  45533 45544557788889999999999988


Q ss_pred             HHcCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHHHHHCCCCCChhhHHHHH-HHHHh-hcchhhHHHHHHHHHHcCCCCC
Q 000951          798 IAEGTMVDCFTFNVLMRKCCEAGEMGKAFDLFNIMNMLGVVPDTNTQDAII-MGLKR-IAAFQESHFVLRGMAEKGLTPK  875 (1211)
Q Consensus       798 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~-~~~~~-~g~~~eA~~~~~~~~~~g~~p~  875 (1211)
                      +.. -+.+...|..|+.+|...|++.+|.-.-+..... ...+.-+...++ .++.- ..--++|..++++.+.  ++|+
T Consensus       361 q~L-ap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~--~~P~  436 (564)
T KOG1174|consen  361 QML-APYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLK--INPI  436 (564)
T ss_pred             Hhc-chhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhc--cCCc
Confidence            874 2346788999999999999999988776655431 122333443332 23332 2234788889999888  8887


Q ss_pred             h-hHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCcccCHHHH
Q 000951          876 C-TQYITLINGMCRVGNFQGAFKLKDEMEALGISSSDVAESAMVRGLAHCGKVEEAMLVLNRMLRMRLVPTIATF  949 (1211)
Q Consensus       876 ~-~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~p~~~~~  949 (1211)
                      . .+-..++..+...|.+++++.++++.+..  -||....+.+++.+.....+++|++.|..+++.+|. |..+.
T Consensus       437 Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~--~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~-~~~sl  508 (564)
T KOG1174|consen  437 YTPAVNLIAELCQVEGPTKDIIKLLEKHLII--FPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPK-SKRTL  508 (564)
T ss_pred             cHHHHHHHHHHHHhhCccchHHHHHHHHHhh--ccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCcc-chHHH
Confidence            5 66778888888999999999999998753  678888888999999999999999999999988866 54443

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.37  E-value=5.1e-11  Score=119.91  Aligned_cols=122  Identities=7%  Similarity=-0.080  Sum_probs=58.7

Q ss_pred             HHHhhcchhhHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCc--hHHHHHHHHHHHhcCCH
Q 000951          850 GLKRIAAFQESHFVLRGMAEKGLTPKCTQYITLINGMCRVGNFQGAFKLKDEMEALGISSS--DVAESAMVRGLAHCGKV  927 (1211)
Q Consensus       850 ~~~~~g~~~eA~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~  927 (1211)
                      .|.=.++++-|+.+|+++++.|+. +++.|.+++-+|.-.++++-++..|++++..-..|+  ..+|+.++.+....|++
T Consensus       333 ~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~  411 (478)
T KOG1129|consen  333 GYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDF  411 (478)
T ss_pred             ccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccch
Confidence            333334444444444444443332 233344444444445555555555555543222222  22455555555555555


Q ss_pred             HHHHHHHHHHHhCCcccCHHHHHHHHHHhhhhCCHHHHHHHHHHHH
Q 000951          928 EEAMLVLNRMLRMRLVPTIATFTTLIHKFCKEAKFVDALKLKGTME  973 (1211)
Q Consensus       928 ~eA~~~~~~~~~~~~~p~~~~~~~L~~~~~~~g~~~~A~~~~~~~~  973 (1211)
                      .-|...|+-++..++. +..++++|+-.-.+.|++++|..++....
T Consensus       412 nlA~rcfrlaL~~d~~-h~ealnNLavL~~r~G~i~~Arsll~~A~  456 (478)
T KOG1129|consen  412 NLAKRCFRLALTSDAQ-HGEALNNLAVLAARSGDILGARSLLNAAK  456 (478)
T ss_pred             HHHHHHHHHHhccCcc-hHHHHHhHHHHHhhcCchHHHHHHHHHhh
Confidence            5555555555555443 55555555555555555555555555444

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.36  E-value=6.5e-11  Score=119.13  Aligned_cols=231  Identities=11%  Similarity=0.029  Sum_probs=183.3

Q ss_pred             HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHH-HHHHHHHh
Q 000951          705 NAVMDGFSRMGNMMMANDLLSTMRSRKLCPSLATYNILLHGYSKKKDLLMCSMLLNTMKMEGLLPDKLTCH-SLILGFCE  783 (1211)
Q Consensus       705 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~-~l~~~~~~  783 (1211)
                      +.+...|.+.|.+.+|+..|+...+.  .|-+.||..|..+|.+..+++.|+.+|.+-++  ..|-.+||. .....+..
T Consensus       227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld--~fP~~VT~l~g~ARi~ea  302 (478)
T KOG1129|consen  227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLD--SFPFDVTYLLGQARIHEA  302 (478)
T ss_pred             HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhh--cCCchhhhhhhhHHHHHH
Confidence            56777888888888888888887754  55667777888888888888888888888887  567777765 34477788


Q ss_pred             cCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhcchhhHHHH
Q 000951          784 TGMLEVGFKFLKKMIAEGTMVDCFTFNVLMRKCCEAGEMGKAFDLFNIMNMLGVVPDTNTQDAIIMGLKRIAAFQESHFV  863 (1211)
Q Consensus       784 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~  863 (1211)
                      .++.++|.++|+..++. .+.++.....+...|.-.++.+-|+..|+++++.|+ .++..|++++-.|.-.++++-++..
T Consensus       303 m~~~~~a~~lYk~vlk~-~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~-~speLf~NigLCC~yaqQ~D~~L~s  380 (478)
T KOG1129|consen  303 MEQQEDALQLYKLVLKL-HPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGA-QSPELFCNIGLCCLYAQQIDLVLPS  380 (478)
T ss_pred             HHhHHHHHHHHHHHHhc-CCccceeeeeeeeccccCCChHHHHHHHHHHHHhcC-CChHHHhhHHHHHHhhcchhhhHHH
Confidence            88888888888888875 233455556666677778888888888888888885 4677888888888888888888888


Q ss_pred             HHHHHHcCCCCCh--hHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 000951          864 LRGMAEKGLTPKC--TQYITLINGMCRVGNFQGAFKLKDEMEALGISSSDVAESAMVRGLAHCGKVEEAMLVLNRMLRMR  941 (1211)
Q Consensus       864 ~~~~~~~g~~p~~--~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~  941 (1211)
                      |.+++..-.+|+.  +.|.+++......|++.-|.+.|+-++..+ +.+.++++.++..-.+.|++++|..+++.+....
T Consensus       381 f~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d-~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~  459 (478)
T KOG1129|consen  381 FQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD-AQHGEALNNLAVLAARSGDILGARSLLNAAKSVM  459 (478)
T ss_pred             HHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC-cchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhC
Confidence            8888876666764  778888888888899999999999888663 5667788899888899999999999999888765


Q ss_pred             c
Q 000951          942 L  942 (1211)
Q Consensus       942 ~  942 (1211)
                      |
T Consensus       460 P  460 (478)
T KOG1129|consen  460 P  460 (478)
T ss_pred             c
Confidence            3

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=99.36  E-value=3.6e-09  Score=110.99  Aligned_cols=289  Identities=12%  Similarity=0.026  Sum_probs=150.4

Q ss_pred             CCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 000951          643 KGKVVSALLFFEKVVSKRTFSPNNVMFTCLVDGLFKAGQSKAAMHISKIMDKEGVYPDTIAFNAVMDGFSRMGNMMMAND  722 (1211)
Q Consensus       643 ~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~  722 (1211)
                      .|++..|.++..+..+.+  .--...|..-..+--..|+.+.+-.++.++.+.--.+.....-+........|+++.|..
T Consensus        97 eG~~~qAEkl~~rnae~~--e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~  174 (400)
T COG3071          97 EGDFQQAEKLLRRNAEHG--EQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARE  174 (400)
T ss_pred             cCcHHHHHHHHHHhhhcC--cchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHH
Confidence            445555555444443322  111222333333344445555555555544433212333333344444444555555555


Q ss_pred             HHHHHHHCCCCC-CHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCH-------HHHHHHHHHHHhcCChHHHHHHH
Q 000951          723 LLSTMRSRKLCP-SLATYNILLHGYSKKKDLLMCSMLLNTMKMEGLLPDK-------LTCHSLILGFCETGMLEVGFKFL  794 (1211)
Q Consensus       723 ~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~-------~~~~~l~~~~~~~g~~~~A~~~~  794 (1211)
                      -..++.+.  .| .+........+|.+.|+|.+...+..++.+.|.-.|.       .+|..+++-....+..+.-.+.+
T Consensus       175 ~v~~ll~~--~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W  252 (400)
T COG3071         175 NVDQLLEM--TPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWW  252 (400)
T ss_pred             HHHHHHHh--CcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHH
Confidence            55555432  23 3444455555555555555555555555555443332       23444444333333333333344


Q ss_pred             HHHHHcCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhcchhhHHHHHHHHHHcCCCC
Q 000951          795 KKMIAEGTMVDCFTFNVLMRKCCEAGEMGKAFDLFNIMNMLGVVPDTNTQDAIIMGLKRIAAFQESHFVLRGMAEKGLTP  874 (1211)
Q Consensus       795 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~g~~p  874 (1211)
                      +....+ ...++....+++.-+.++|..++|.++..+..+....|..    ...-.+.+-++...=++..++.++  ..|
T Consensus       253 ~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L----~~~~~~l~~~d~~~l~k~~e~~l~--~h~  325 (400)
T COG3071         253 KNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRL----CRLIPRLRPGDPEPLIKAAEKWLK--QHP  325 (400)
T ss_pred             HhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhH----HHHHhhcCCCCchHHHHHHHHHHH--hCC
Confidence            443332 3334555556666666777777777776666655444431    111223345555555555666555  334


Q ss_pred             C-hhHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCccc
Q 000951          875 K-CTQYITLINGMCRVGNFQGAFKLKDEMEALGISSSDVAESAMVRGLAHCGKVEEAMLVLNRMLRMRLVP  944 (1211)
Q Consensus       875 ~-~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~p  944 (1211)
                      + +..+.+|+..|.+.+.|.+|...|+.+++.  .|+...|..+++++.+.|+..+|.+.+++.+.+-.+|
T Consensus       326 ~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~~~~  394 (400)
T COG3071         326 EDPLLLSTLGRLALKNKLWGKASEALEAALKL--RPSASDYAELADALDQLGEPEEAEQVRREALLLTRQP  394 (400)
T ss_pred             CChhHHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHHhcCC
Confidence            2 356777777777777777777777766654  6777777777777777777777777777776543333

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.35  E-value=2e-10  Score=122.86  Aligned_cols=197  Identities=14%  Similarity=0.075  Sum_probs=121.7

Q ss_pred             HhhHHHHHHHHHhcCcHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhcchhhHHHHHHHHHHcCCCCC-hhHHHHHHH
Q 000951          806 CFTFNVLMRKCCEAGEMGKAFDLFNIMNMLGVVPDTNTQDAIIMGLKRIAAFQESHFVLRGMAEKGLTPK-CTQYITLIN  884 (1211)
Q Consensus       806 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~g~~p~-~~~~~~l~~  884 (1211)
                      ...+..++..|...|++++|.+.++++.+.. +.+...+..++..|...|++++|+..|++.++  ..|+ ...+..++.
T Consensus        31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~--~~~~~~~~~~~~~~  107 (234)
T TIGR02521        31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALT--LNPNNGDVLNNYGT  107 (234)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCCHHHHHHHHH
Confidence            3445555566666666666666666665432 22345555666666666666666666666665  3443 355566666


Q ss_pred             HHHhcCChhhHHHHHHHHHHcC-CCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCcccCHHHHHHHHHHhhhhCCHH
Q 000951          885 GMCRVGNFQGAFKLKDEMEALG-ISSSDVAESAMVRGLAHCGKVEEAMLVLNRMLRMRLVPTIATFTTLIHKFCKEAKFV  963 (1211)
Q Consensus       885 ~~~~~g~~~eA~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~p~~~~~~~L~~~~~~~g~~~  963 (1211)
                      .+...|++++|.+.|+++.+.. .+.....+..++.++...|++++|.+.++++++..+. +...+..++.++...|+++
T Consensus       108 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~  186 (234)
T TIGR02521       108 FLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQ-RPESLLELAELYYLRGQYK  186 (234)
T ss_pred             HHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-ChHHHHHHHHHHHHcCCHH
Confidence            6666777777777777766432 1223445566677777777777777777777776544 5666777777777777777


Q ss_pred             HHHHHHHHHHhcCCCCc-hHHHHHHHHHHHhCCChhHHHHHHHHHH
Q 000951          964 DALKLKGTMELSGVKLD-VVSYNVLISGLCANGDVMPAFELYEEMK 1008 (1211)
Q Consensus       964 ~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 1008 (1211)
                      +|...++.....  .|+ ...+..++..+...|++++|..+.+.+.
T Consensus       187 ~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~  230 (234)
T TIGR02521       187 DARAYLERYQQT--YNQTAESLWLGIRIARALGDVAAAQRYGAQLQ  230 (234)
T ss_pred             HHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            777776665554  343 3355556666667777777777666554

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.33  E-value=4.4e-10  Score=120.25  Aligned_cols=195  Identities=17%  Similarity=0.124  Sum_probs=108.2

Q ss_pred             HHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhh
Q 000951          775 HSLILGFCETGMLEVGFKFLKKMIAEGTMVDCFTFNVLMRKCCEAGEMGKAFDLFNIMNMLGVVPDTNTQDAIIMGLKRI  854 (1211)
Q Consensus       775 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  854 (1211)
                      ..++..+...|++++|.+.++++++.. +.+...+..++..|...|++++|.+.|+++.+.. +.+...+..++..+...
T Consensus        35 ~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~  112 (234)
T TIGR02521        35 VQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTFLCQQ  112 (234)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHc
Confidence            334444444445555555544444421 1123344444455555555555555555554432 12334445555555555


Q ss_pred             cchhhHHHHHHHHHHcCCCCC-hhHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHH
Q 000951          855 AAFQESHFVLRGMAEKGLTPK-CTQYITLINGMCRVGNFQGAFKLKDEMEALGISSSDVAESAMVRGLAHCGKVEEAMLV  933 (1211)
Q Consensus       855 g~~~eA~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~  933 (1211)
                      |++++|+..|+++++....|. ...+..++.++...|++++|...++++.+.. +.+...+..++.++...|++++|...
T Consensus       113 g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~  191 (234)
T TIGR02521       113 GKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQYKDARAY  191 (234)
T ss_pred             ccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCHHHHHHH
Confidence            555555555555554222222 2445556666667777777777777766542 33455666677777777777777777


Q ss_pred             HHHHHhCCcccCHHHHHHHHHHhhhhCCHHHHHHHHHHHH
Q 000951          934 LNRMLRMRLVPTIATFTTLIHKFCKEAKFVDALKLKGTME  973 (1211)
Q Consensus       934 ~~~~~~~~~~p~~~~~~~L~~~~~~~g~~~~A~~~~~~~~  973 (1211)
                      ++++++..+ +++..+..++..+...|+.++|..+.+.+.
T Consensus       192 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~  230 (234)
T TIGR02521       192 LERYQQTYN-QTAESLWLGIRIARALGDVAAAQRYGAQLQ  230 (234)
T ss_pred             HHHHHHhCC-CCHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            777776632 255666666777777777777777655443

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=99.32  E-value=5.7e-10  Score=126.29  Aligned_cols=195  Identities=15%  Similarity=0.178  Sum_probs=122.8

Q ss_pred             HHHHHHhcCChHHHHHHHHHHHHc-----CCC-CC-HhhHHHHHHHHHhcCcHHHHHHHHHHHHH-----CCCC-CC-hh
Q 000951          777 LILGFCETGMLEVGFKFLKKMIAE-----GTM-VD-CFTFNVLMRKCCEAGEMGKAFDLFNIMNM-----LGVV-PD-TN  842 (1211)
Q Consensus       777 l~~~~~~~g~~~~A~~~~~~~~~~-----~~~-~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~-~~-~~  842 (1211)
                      +...|...+++++|..+|++++.-     |.. |. ..+++.|...|.+.|++++|...++++.+     .+.. |. ..
T Consensus       247 ~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~  326 (508)
T KOG1840|consen  247 LALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAA  326 (508)
T ss_pred             HHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHH
Confidence            445566666666666666665542     111 11 23455555566666666666666555532     1111 11 22


Q ss_pred             hHHHHHHHHHhhcchhhHHHHHHHHHH---cCCCCCh----hHHHHHHHHHHhcCChhhHHHHHHHHHHcC----C---C
Q 000951          843 TQDAIIMGLKRIAAFQESHFVLRGMAE---KGLTPKC----TQYITLINGMCRVGNFQGAFKLKDEMEALG----I---S  908 (1211)
Q Consensus       843 ~~~~l~~~~~~~g~~~eA~~~~~~~~~---~g~~p~~----~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~----~---~  908 (1211)
                      .++.++..+...+++++|+.+++..++   .-..+++    .++..|+..|.+.|+++||.++|+++++..    -   .
T Consensus       327 ~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~  406 (508)
T KOG1840|consen  327 QLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDY  406 (508)
T ss_pred             HHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcCh
Confidence            355666677777777777777777664   1122222    668888888888888888888888886431    1   1


Q ss_pred             CchHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----Ccc-c-CHHHHHHHHHHhhhhCCHHHHHHHHHH
Q 000951          909 SSDVAESAMVRGLAHCGKVEEAMLVLNRMLRM----RLV-P-TIATFTTLIHKFCKEAKFVDALKLKGT  971 (1211)
Q Consensus       909 ~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~----~~~-p-~~~~~~~L~~~~~~~g~~~~A~~~~~~  971 (1211)
                      -....++.|+..|.+.+++.+|.++|.+.+..    |+. | ...+|.+|+.+|...|++++|+++-..
T Consensus       407 ~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~  475 (508)
T KOG1840|consen  407 GVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEK  475 (508)
T ss_pred             hhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence            12346678888888888888887777776542    221 2 347899999999999999999998553

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=99.28  E-value=2.9e-08  Score=101.13  Aligned_cols=298  Identities=11%  Similarity=0.020  Sum_probs=173.1

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCCHH-HHHHH
Q 000951          595 TVAYNTILAETCKSGNLWEAIVLLDEMVQFNLLPD-RYTYTILLAGLCRKGKVVSALLFFEKVVSKRTFSPNNV-MFTCL  672 (1211)
Q Consensus       595 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~-~~~~l  672 (1211)
                      +.-...+...+...|++.+|+..|...++.+  |+ ..++..-...|...|+...|+.-+.++++   +.||-. .-..-
T Consensus        38 vekhlElGk~lla~~Q~sDALt~yHaAve~d--p~~Y~aifrRaT~yLAmGksk~al~Dl~rVle---lKpDF~~ARiQR  112 (504)
T KOG0624|consen   38 VEKHLELGKELLARGQLSDALTHYHAAVEGD--PNNYQAIFRRATVYLAMGKSKAALQDLSRVLE---LKPDFMAARIQR  112 (504)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHcCC--chhHHHHHHHHHHHhhhcCCccchhhHHHHHh---cCccHHHHHHHh
Confidence            3334445666667777777777777777642  22 22333344556677777777777777777   567632 23334


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhCCCCCCH--H----------HH--HHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHH
Q 000951          673 VDGLFKAGQSKAAMHISKIMDKEGVYPDT--I----------AF--NAVMDGFSRMGNMMMANDLLSTMRSRKLCP-SLA  737 (1211)
Q Consensus       673 ~~~~~~~g~~~~A~~~~~~~~~~g~~~~~--~----------~~--~~li~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~  737 (1211)
                      ...+.++|.++.|..-|+.+++.....+.  .          .|  ...+..+...|+...|+.....+.+  +.| |..
T Consensus       113 g~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llE--i~~Wda~  190 (504)
T KOG0624|consen  113 GVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLE--IQPWDAS  190 (504)
T ss_pred             chhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHh--cCcchhH
Confidence            45667777777777777777665321110  1          11  1122234457888888888888884  466 777


Q ss_pred             HHHHHHHHHHccCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhH----HHH
Q 000951          738 TYNILLHGYSKKKDLLMCSMLLNTMKMEGLLP-DKLTCHSLILGFCETGMLEVGFKFLKKMIAEGTMVDCFTF----NVL  812 (1211)
Q Consensus       738 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~----~~l  812 (1211)
                      .|..-..+|...|++..|+.-++.+.+  +.. +..++.-+-..+...|+.+.++...++.++  +.||....    ..|
T Consensus       191 l~~~Rakc~i~~~e~k~AI~Dlk~ask--Ls~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLK--ldpdHK~Cf~~YKkl  266 (504)
T KOG0624|consen  191 LRQARAKCYIAEGEPKKAIHDLKQASK--LSQDNTEGHYKISQLLYTVGDAENSLKEIRECLK--LDPDHKLCFPFYKKL  266 (504)
T ss_pred             HHHHHHHHHHhcCcHHHHHHHHHHHHh--ccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHc--cCcchhhHHHHHHHH
Confidence            777788888889999988888887766  333 334455566777788888888888888888  56663221    111


Q ss_pred             -------H--HHHHhcCcHHHHHHHHHHHHHCCCCCChh---hHHHHHHHHHhhcchhhHHHHHHHHHHcCCCCC-hhHH
Q 000951          813 -------M--RKCCEAGEMGKAFDLFNIMNMLGVVPDTN---TQDAIIMGLKRIAAFQESHFVLRGMAEKGLTPK-CTQY  879 (1211)
Q Consensus       813 -------~--~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~g~~~eA~~~~~~~~~~g~~p~-~~~~  879 (1211)
                             -  ......++|.++++..+...+.......+   .+..+..+|...|++.||+....++++  +.|+ ..++
T Consensus       267 kKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~--~d~~dv~~l  344 (504)
T KOG0624|consen  267 KKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLD--IDPDDVQVL  344 (504)
T ss_pred             HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHh--cCchHHHHH
Confidence                   1  12233445555555555554433221111   222333344445555555555555555  5554 2445


Q ss_pred             HHHHHHHHhcCChhhHHHHHHHHHHc
Q 000951          880 ITLINGMCRVGNFQGAFKLKDEMEAL  905 (1211)
Q Consensus       880 ~~l~~~~~~~g~~~eA~~~~~~~~~~  905 (1211)
                      ..-+.+|.....|++|+.-|+.+.+.
T Consensus       345 ~dRAeA~l~dE~YD~AI~dye~A~e~  370 (504)
T KOG0624|consen  345 CDRAEAYLGDEMYDDAIHDYEKALEL  370 (504)
T ss_pred             HHHHHHHhhhHHHHHHHHHHHHHHhc
Confidence            55555555555555555555555443

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=99.27  E-value=3.2e-06  Score=95.89  Aligned_cols=344  Identities=17%  Similarity=0.186  Sum_probs=169.2

Q ss_pred             HHcCCHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHhHHHHHHHHHHhcCChHHHH
Q 000951          291 VKEGKIQVASRVFDEMSMLNFSPNSITYNELIDGHCCKGNFKEAFRLLAMMEEMGLRPNEVSYGALLNGFCKHAKFDLAR  370 (1211)
Q Consensus       291 ~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~  370 (1211)
                      ...|.+++|..+|.+-+.         |..|=..|-..|.+++|+++-+.=-.-.+   ..||..-.+-+-..++.+.|+
T Consensus       811 ieLgMlEeA~~lYr~ckR---------~DLlNKlyQs~g~w~eA~eiAE~~DRiHL---r~Tyy~yA~~Lear~Di~~Al  878 (1416)
T KOG3617|consen  811 IELGMLEEALILYRQCKR---------YDLLNKLYQSQGMWSEAFEIAETKDRIHL---RNTYYNYAKYLEARRDIEAAL  878 (1416)
T ss_pred             HHHhhHHHHHHHHHHHHH---------HHHHHHHHHhcccHHHHHHHHhhccceeh---hhhHHHHHHHHHhhccHHHHH
Confidence            355666777776666554         33333445556666666665443211111   123433344444455666666


Q ss_pred             HHHHHH----------HHCCC---------CcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHH
Q 000951          371 SLLERM----------RTNGI---------SISCIAYTSVIDGLCKCGLLDEAMQLFNKMFKDGLNPDLITFSVLINGFC  431 (1211)
Q Consensus       371 ~l~~~~----------~~~~~---------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~  431 (1211)
                      +.|++.          .+...         ..|...|.-....+-..|+++.|+.+|....+         |-++++..|
T Consensus       879 eyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs~VrI~C  949 (1416)
T KOG3617|consen  879 EYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------YFSMVRIKC  949 (1416)
T ss_pred             HHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------hhhheeeEe
Confidence            555432          11110         01223333344444455666666666655432         455556666


Q ss_pred             hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHH
Q 000951          432 KVGMTRKAKAVLCKMYRDGLVPNKIIYSTLIYYFCKMGKVTEAMKVYAVMNRNAQGSDHFTCNMLVASLCKGGKVCEAED  511 (1211)
Q Consensus       432 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~  511 (1211)
                      -+|+.++|-++-++      .-|......+.+.|-+.|++.+|...|..+..         +..-|. +|+.+++++-+.
T Consensus       950 ~qGk~~kAa~iA~e------sgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqa---------fsnAIR-lcKEnd~~d~L~ 1013 (1416)
T KOG3617|consen  950 IQGKTDKAARIAEE------SGDKAACYHLARMYENDGDVVKAVKFFTRAQA---------FSNAIR-LCKENDMKDRLA 1013 (1416)
T ss_pred             eccCchHHHHHHHh------cccHHHHHHHHHHhhhhHHHHHHHHHHHHHHH---------HHHHHH-HHHhcCHHHHHH
Confidence            66666666655433      12445555566666666666666666655432         111121 233333332222


Q ss_pred             HHHHHHhcCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHH--------
Q 000951          512 YVGHMKRIGVVPNSITFDCMIDGYGTLG-DGLKAFSMFDEMVKLGHHPSIFTYGSLLKGLCKGGNLKEAKRF--------  582 (1211)
Q Consensus       512 ~~~~~~~~g~~p~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~--------  582 (1211)
                      -+-.|..   ..|.+   .....|-..| ....|..+                      |-+.|.+..|.++        
T Consensus      1014 nlal~s~---~~d~v---~aArYyEe~g~~~~~AVmL----------------------YHkAGm~~kALelAF~tqQf~ 1065 (1416)
T KOG3617|consen 1014 NLALMSG---GSDLV---SAARYYEELGGYAHKAVML----------------------YHKAGMIGKALELAFRTQQFS 1065 (1416)
T ss_pred             HHHhhcC---chhHH---HHHHHHHHcchhhhHHHHH----------------------HHhhcchHHHHHHHHhhcccH
Confidence            2211111   00110   1111121222 33333333                      3333333333332        


Q ss_pred             ----HHHhhhCCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHH
Q 000951          583 ----LNSLHHIPSAVDTVAYNTILAETCKSGNLWEAIVLLDEMVQFNLLPDRYTYTILLAGLCRKGKVVSALLFFEKVVS  658 (1211)
Q Consensus       583 ----~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~  658 (1211)
                          +..  ...+..|+...+.-.+.++...++++|..++....+.         ..-+ .+|...+..-..++-+.|.-
T Consensus      1066 aL~lIa~--DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar~~---------~~Al-qlC~~~nv~vtee~aE~mTp 1133 (1416)
T KOG3617|consen 1066 ALDLIAK--DLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLAREF---------SGAL-QLCKNRNVRVTEEFAELMTP 1133 (1416)
T ss_pred             HHHHHHH--hcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH---------HHHH-HHHhcCCCchhHHHHHhcCc
Confidence                211  2344557888888888888888898888887766542         1122 23444444444444444322


Q ss_pred             cCCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHH
Q 000951          659 KRTFSPN----NVMFTCLVDGLFKAGQSKAAMHISKIMDKEGVYPDTIAFNAVMDGFSRMGNMMMA  720 (1211)
Q Consensus       659 ~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A  720 (1211)
                      ...-.|+    ......+...|.++|.+..|-+-|-++-..         ...+.++.+.|+.++-
T Consensus      1134 ~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~AtKKfTQAGdK---------l~AMraLLKSGdt~KI 1190 (1416)
T KOG3617|consen 1134 TKDDMPNEQERKQVLEQVAELCLQQGAYHAATKKFTQAGDK---------LSAMRALLKSGDTQKI 1190 (1416)
T ss_pred             CcCCCccHHHHHHHHHHHHHHHHhccchHHHHHHHhhhhhH---------HHHHHHHHhcCCcceE
Confidence            1112333    245667778899999999988777666211         2345667778877653

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=99.27  E-value=1.2e-08  Score=110.97  Aligned_cols=236  Identities=12%  Similarity=0.052  Sum_probs=164.6

Q ss_pred             HHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCC--CH----HHHHHHHH
Q 000951          706 AVMDGFSRMGNMMMANDLLSTMRSRKLCPSLATYNILLHGYSKKKDLLMCSMLLNTMKMEGLLP--DK----LTCHSLIL  779 (1211)
Q Consensus       706 ~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p--~~----~~~~~l~~  779 (1211)
                      .+..+..+..+++.|.+.+....+.  .-+..-++....+|...|.+.+.+..-....+.|..-  +.    ..+..++.
T Consensus       229 ~lgnaaykkk~f~~a~q~y~~a~el--~~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~  306 (539)
T KOG0548|consen  229 ELGNAAYKKKDFETAIQHYAKALEL--ATDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGN  306 (539)
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHhH--hhhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhh
Confidence            3455555566666666666666643  2344445556666777777666666666655544321  00    11222345


Q ss_pred             HHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHHHHHCCCCCC-hhhHHHHHHHHHhhcchh
Q 000951          780 GFCETGMLEVGFKFLKKMIAEGTMVDCFTFNVLMRKCCEAGEMGKAFDLFNIMNMLGVVPD-TNTQDAIIMGLKRIAAFQ  858 (1211)
Q Consensus       780 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~  858 (1211)
                      +|.+.++++.|+.+|.+.+...-.|+         ...+....+++........-.+  |. ..-...-+..+.+.|++.
T Consensus       307 a~~k~~~~~~ai~~~~kaLte~Rt~~---------~ls~lk~~Ek~~k~~e~~a~~~--pe~A~e~r~kGne~Fk~gdy~  375 (539)
T KOG0548|consen  307 AYTKREDYEGAIKYYQKALTEHRTPD---------LLSKLKEAEKALKEAERKAYIN--PEKAEEEREKGNEAFKKGDYP  375 (539)
T ss_pred             hhhhHHhHHHHHHHHHHHhhhhcCHH---------HHHHHHHHHHHHHHHHHHHhhC--hhHHHHHHHHHHHHHhccCHH
Confidence            77788999999999999877533322         3444556777777766655433  33 222334477888999999


Q ss_pred             hHHHHHHHHHHcCCCCC-hhHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 000951          859 ESHFVLRGMAEKGLTPK-CTQYITLINGMCRVGNFQGAFKLKDEMEALGISSSDVAESAMVRGLAHCGKVEEAMLVLNRM  937 (1211)
Q Consensus       859 eA~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~  937 (1211)
                      +|+..|.++++  .+|+ ...|.+.+.+|.+.|.+..|++--+..++. .++....|..-+.++....+|++|++.|++.
T Consensus       376 ~Av~~YteAIk--r~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL-~p~~~kgy~RKg~al~~mk~ydkAleay~ea  452 (539)
T KOG0548|consen  376 EAVKHYTEAIK--RDPEDARLYSNRAACYLKLGEYPEALKDAKKCIEL-DPNFIKAYLRKGAALRAMKEYDKALEAYQEA  452 (539)
T ss_pred             HHHHHHHHHHh--cCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhc-CchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999  7786 488999999999999999999999999887 3666778888888999999999999999999


Q ss_pred             HhCCcccCHHHHHHHHHHhhh
Q 000951          938 LRMRLVPTIATFTTLIHKFCK  958 (1211)
Q Consensus       938 ~~~~~~p~~~~~~~L~~~~~~  958 (1211)
                      ++.+|. +......+..++..
T Consensus       453 le~dp~-~~e~~~~~~rc~~a  472 (539)
T KOG0548|consen  453 LELDPS-NAEAIDGYRRCVEA  472 (539)
T ss_pred             HhcCch-hHHHHHHHHHHHHH
Confidence            998855 55555555555544

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=99.26  E-value=2.1e-09  Score=104.33  Aligned_cols=202  Identities=13%  Similarity=0.026  Sum_probs=165.2

Q ss_pred             hHHHHHHHHHhcCcHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhcchhhHHHHHHHHHHcCCCCCh-hHHHHHHHHH
Q 000951          808 TFNVLMRKCCEAGEMGKAFDLFNIMNMLGVVPDTNTQDAIIMGLKRIAAFQESHFVLRGMAEKGLTPKC-TQYITLINGM  886 (1211)
Q Consensus       808 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~g~~p~~-~~~~~l~~~~  886 (1211)
                      +...|+-.|...|++..|.+-++++++.+ +.+..+|..++..|.+.|..+.|.+.|+++++  +.|+. ...++.+.-+
T Consensus        37 arlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAls--l~p~~GdVLNNYG~FL  113 (250)
T COG3063          37 ARLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALS--LAPNNGDVLNNYGAFL  113 (250)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHh--cCCCccchhhhhhHHH
Confidence            44556678889999999999999988754 33477888899999999999999999999998  88875 7888899999


Q ss_pred             HhcCChhhHHHHHHHHHHcC-CCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCcccCHHHHHHHHHHhhhhCCHHHH
Q 000951          887 CRVGNFQGAFKLKDEMEALG-ISSSDVAESAMVRGLAHCGKVEEAMLVLNRMLRMRLVPTIATFTTLIHKFCKEAKFVDA  965 (1211)
Q Consensus       887 ~~~g~~~eA~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~p~~~~~~~L~~~~~~~g~~~~A  965 (1211)
                      |.+|++++|...|+++++.. ......+|..++.+-.+.|+.+.|.+.|+++++.++. .+.+...++....+.|++..|
T Consensus       114 C~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~-~~~~~l~~a~~~~~~~~y~~A  192 (250)
T COG3063         114 CAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQ-FPPALLELARLHYKAGDYAPA  192 (250)
T ss_pred             HhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcC-CChHHHHHHHHHHhcccchHH
Confidence            99999999999999998643 2334557888888899999999999999999998876 778888999999999999999


Q ss_pred             HHHHHHHHhcCCCCchHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCccCh
Q 000951          966 LKLKGTMELSGVKLDVVSYNVLISGLCANGDVMPAFELYEEMKHKGLCPNS 1016 (1211)
Q Consensus       966 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~p~~ 1016 (1211)
                      ...++.....+ .+...+....+.+-...|+-+.+.++-..+..  .-|..
T Consensus       193 r~~~~~~~~~~-~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r--~fP~s  240 (250)
T COG3063         193 RLYLERYQQRG-GAQAESLLLGIRIAKRLGDRAAAQRYQAQLQR--LFPYS  240 (250)
T ss_pred             HHHHHHHHhcc-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHH--hCCCc
Confidence            99888776654 37777777777787888999988888777754  34444

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=99.26  E-value=1.2e-07  Score=106.96  Aligned_cols=240  Identities=14%  Similarity=0.110  Sum_probs=141.7

Q ss_pred             CHHHHHHHHH--HHHHcCCHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-C--------CC
Q 000951          279 NEVTYNTLIN--GFVKEGKIQVASRVFDEMSMLNFSPNSITYNELIDGHCCKGNFKEAFRLLAMMEEM-G--------LR  347 (1211)
Q Consensus       279 ~~~~~~~li~--~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g--------~~  347 (1211)
                      |..|...+++  .|...|++|.|.+-.+.+++      ...|..|.+.+.+..+.+-|.-.+..|... |        -.
T Consensus       725 d~~TRkaml~FSfyvtiG~MD~AfksI~~IkS------~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~  798 (1416)
T KOG3617|consen  725 DESTRKAMLDFSFYVTIGSMDAAFKSIQFIKS------DSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQN  798 (1416)
T ss_pred             CHHHHHhhhceeEEEEeccHHHHHHHHHHHhh------hHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhC
Confidence            5556666654  35667888888777766653      456777777777777777666655555421 1        11


Q ss_pred             cCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHH
Q 000951          348 PNEVSYGALLNGFCKHAKFDLARSLLERMRTNGISISCIAYTSVIDGLCKCGLLDEAMQLFNKMFKDGLNPDLITFSVLI  427 (1211)
Q Consensus       348 p~~~t~~~ll~~~~~~g~~~~a~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li  427 (1211)
                      |+ .+=..+.-.....|.+++|..++.+-...+         .|=..|-..|.+++|.++-+.=-+  +. -..||..-.
T Consensus       799 ~~-e~eakvAvLAieLgMlEeA~~lYr~ckR~D---------LlNKlyQs~g~w~eA~eiAE~~DR--iH-Lr~Tyy~yA  865 (1416)
T KOG3617|consen  799 GE-EDEAKVAVLAIELGMLEEALILYRQCKRYD---------LLNKLYQSQGMWSEAFEIAETKDR--IH-LRNTYYNYA  865 (1416)
T ss_pred             Cc-chhhHHHHHHHHHhhHHHHHHHHHHHHHHH---------HHHHHHHhcccHHHHHHHHhhccc--ee-hhhhHHHHH
Confidence            22 111111122345677888888877766544         233456667778887777654221  11 123444444


Q ss_pred             HHHHhcCCHHHHHHHHHHHH----------HCC---------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 000951          428 NGFCKVGMTRKAKAVLCKMY----------RDG---------LVPNKIIYSTLIYYFCKMGKVTEAMKVYAVMNRNAQGS  488 (1211)
Q Consensus       428 ~~~~~~g~~~~A~~~~~~m~----------~~g---------~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~  488 (1211)
                      .-+-..++.+.|++.|++..          ...         -..|...|......+-..|+.+.|+.+|..+..     
T Consensus       866 ~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D-----  940 (1416)
T KOG3617|consen  866 KYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD-----  940 (1416)
T ss_pred             HHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh-----
Confidence            44555666666666665431          111         022334455555555567777777777776543     


Q ss_pred             CHHHHHHHHHHHHcCCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 000951          489 DHFTCNMLVASLCKGGKVCEAEDYVGHMKRIGVVPNSITFDCMIDGYGTLGDGLKAFSMFDEMV  552 (1211)
Q Consensus       489 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~  552 (1211)
                          |-+++...|-.|+.++|-++-++-      .|..+...+...|-..|++.+|...|.+..
T Consensus       941 ----~fs~VrI~C~qGk~~kAa~iA~es------gd~AAcYhlaR~YEn~g~v~~Av~FfTrAq  994 (1416)
T KOG3617|consen  941 ----YFSMVRIKCIQGKTDKAARIAEES------GDKAACYHLARMYENDGDVVKAVKFFTRAQ  994 (1416)
T ss_pred             ----hhhheeeEeeccCchHHHHHHHhc------ccHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence                345666677778888887765542      366666677788888888888888777654

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=99.25  E-value=2.9e-08  Score=101.12  Aligned_cols=323  Identities=15%  Similarity=0.088  Sum_probs=190.6

Q ss_pred             HHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHH-HHHHH
Q 000951          633 YTILLAGLCRKGKVVSALLFFEKVVSKRTFSPN-NVMFTCLVDGLFKAGQSKAAMHISKIMDKEGVYPDTIAFN-AVMDG  710 (1211)
Q Consensus       633 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~-~li~~  710 (1211)
                      ..-+...+...|++..|+..|..+++.   .|+ ..++..-...|...|+-..|+.-+...++.  +||..... .-...
T Consensus        41 hlElGk~lla~~Q~sDALt~yHaAve~---dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg~v  115 (504)
T KOG0624|consen   41 HLELGKELLARGQLSDALTHYHAAVEG---DPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRGVV  115 (504)
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHcC---CchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhchh
Confidence            444555555666666666666666552   232 233333445555556666665555555543  45543221 12233


Q ss_pred             HHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHH
Q 000951          711 FSRMGNMMMANDLLSTMRSRKLCPSLATYNILLHGYSKKKDLLMCSMLLNTMKMEGLLPDKLTCHSLILGFCETGMLEVG  790 (1211)
Q Consensus       711 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A  790 (1211)
                      +.++|.+++|..=|+.+...  .|+..+-   ..++.+.-       ..++         .......+..+...|+...|
T Consensus       116 llK~Gele~A~~DF~~vl~~--~~s~~~~---~eaqskl~-------~~~e---------~~~l~~ql~s~~~~GD~~~a  174 (504)
T KOG0624|consen  116 LLKQGELEQAEADFDQVLQH--EPSNGLV---LEAQSKLA-------LIQE---------HWVLVQQLKSASGSGDCQNA  174 (504)
T ss_pred             hhhcccHHHHHHHHHHHHhc--CCCcchh---HHHHHHHH-------hHHH---------HHHHHHHHHHHhcCCchhhH
Confidence            45566666666666665543  2211100   00000000       0000         01112233455678999999


Q ss_pred             HHHHHHHHHcCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhcchhhHHHHHHHHHHc
Q 000951          791 FKFLKKMIAEGTMVDCFTFNVLMRKCCEAGEMGKAFDLFNIMNMLGVVPDTNTQDAIIMGLKRIAAFQESHFVLRGMAEK  870 (1211)
Q Consensus       791 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~  870 (1211)
                      +.+...+++- .+.|...+.....+|...|+...|+.-++.+.+.. ..++.++.-+...+...|+.+.++...++.++ 
T Consensus       175 i~~i~~llEi-~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLK-  251 (504)
T KOG0624|consen  175 IEMITHLLEI-QPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECLK-  251 (504)
T ss_pred             HHHHHHHHhc-CcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHc-
Confidence            9999999985 45678888888999999999999998888776532 34578888888999999999999999999999 


Q ss_pred             CCCCChhHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCccc---CHH
Q 000951          871 GLTPKCTQYITLINGMCRVGNFQGAFKLKDEMEALGISSSDVAESAMVRGLAHCGKVEEAMLVLNRMLRMRLVP---TIA  947 (1211)
Q Consensus       871 g~~p~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~p---~~~  947 (1211)
                       ++||+.....      .-+.+.+..+.++.|.                .....++|.++++..+++++.+|+.   ...
T Consensus       252 -ldpdHK~Cf~------~YKklkKv~K~les~e----------------~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~  308 (504)
T KOG0624|consen  252 -LDPDHKLCFP------FYKKLKKVVKSLESAE----------------QAIEEKHWTECLEAGEKVLKNEPEETMIRYN  308 (504)
T ss_pred             -cCcchhhHHH------HHHHHHHHHHHHHHHH----------------HHHhhhhHHHHHHHHHHHHhcCCcccceeee
Confidence             8998732221      0111222222222222                1234566777777777777766542   123


Q ss_pred             HHHHHHHHhhhhCCHHHHHHHHHHHHhcCCCCch-HHHHHHHHHHHhCCChhHHHHHHHHHHH
Q 000951          948 TFTTLIHKFCKEAKFVDALKLKGTMELSGVKLDV-VSYNVLISGLCANGDVMPAFELYEEMKH 1009 (1211)
Q Consensus       948 ~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 1009 (1211)
                      ....+-.++...|++.+|++........  +||. .++..-+.+|....+||.|+.-|+...+
T Consensus       309 ~~r~~c~C~~~d~~~~eAiqqC~evL~~--d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e  369 (504)
T KOG0624|consen  309 GFRVLCTCYREDEQFGEAIQQCKEVLDI--DPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALE  369 (504)
T ss_pred             eeheeeecccccCCHHHHHHHHHHHHhc--CchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh
Confidence            3344555666677777777766655443  6653 3666667777777777777777777655

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.25  E-value=2.4e-09  Score=117.27  Aligned_cols=125  Identities=10%  Similarity=-0.022  Sum_probs=66.8

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHH
Q 000951          703 AFNAVMDGFSRMGNMMMANDLLSTMRSRKLCP-SLATYNILLHGYSKKKDLLMCSMLLNTMKMEGLLPD-KLTCHSLILG  780 (1211)
Q Consensus       703 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~  780 (1211)
                      .|..+...|...|++++|...|++..+.  .| +...|+.++..+...|++++|+..|+++++  +.|+ ..+|..++.+
T Consensus        66 ~~~~~g~~~~~~g~~~~A~~~~~~Al~l--~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~--l~P~~~~a~~~lg~~  141 (296)
T PRK11189         66 LHYERGVLYDSLGLRALARNDFSQALAL--RPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLE--LDPTYNYAYLNRGIA  141 (296)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHH
Confidence            3444555555666666666666666542  34 455666666666666666666666666665  4452 3455555556


Q ss_pred             HHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHHHH
Q 000951          781 FCETGMLEVGFKFLKKMIAEGTMVDCFTFNVLMRKCCEAGEMGKAFDLFNIMN  833 (1211)
Q Consensus       781 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~  833 (1211)
                      +...|++++|++.++++++.  .|+..........+...+++++|++.|++..
T Consensus       142 l~~~g~~~eA~~~~~~al~~--~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~  192 (296)
T PRK11189        142 LYYGGRYELAQDDLLAFYQD--DPNDPYRALWLYLAESKLDPKQAKENLKQRY  192 (296)
T ss_pred             HHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHccCCHHHHHHHHHHHH
Confidence            66666666666666666653  2322111111122334455666666665443

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.22  E-value=3.7e-09  Score=115.86  Aligned_cols=94  Identities=9%  Similarity=-0.058  Sum_probs=50.0

Q ss_pred             HHHHHHHHHHHccCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HhhHHHHHH
Q 000951          737 ATYNILLHGYSKKKDLLMCSMLLNTMKMEGLLP-DKLTCHSLILGFCETGMLEVGFKFLKKMIAEGTMVD-CFTFNVLMR  814 (1211)
Q Consensus       737 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~  814 (1211)
                      ..|..++..|...|++++|+..|+++++  ..| +...|+.++..+...|++++|+..|+++++.  .|+ ..++..++.
T Consensus        65 ~~~~~~g~~~~~~g~~~~A~~~~~~Al~--l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l--~P~~~~a~~~lg~  140 (296)
T PRK11189         65 QLHYERGVLYDSLGLRALARNDFSQALA--LRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLEL--DPTYNYAYLNRGI  140 (296)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHH--cCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHH
Confidence            3455555555555555555555555555  334 3345555555555555555555555555552  232 344455555


Q ss_pred             HHHhcCcHHHHHHHHHHHHH
Q 000951          815 KCCEAGEMGKAFDLFNIMNM  834 (1211)
Q Consensus       815 ~~~~~g~~~~A~~~~~~~~~  834 (1211)
                      ++...|++++|++.|++..+
T Consensus       141 ~l~~~g~~~eA~~~~~~al~  160 (296)
T PRK11189        141 ALYYGGRYELAQDDLLAFYQ  160 (296)
T ss_pred             HHHHCCCHHHHHHHHHHHHH
Confidence            55555555555555555554

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=99.16  E-value=4.3e-08  Score=112.91  Aligned_cols=129  Identities=18%  Similarity=0.200  Sum_probs=97.8

Q ss_pred             hhHHHHHHHHHhhcchhhHHHHHHHHHHcCCCCC-hhHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCchHHHHHHHHH
Q 000951          842 NTQDAIIMGLKRIAAFQESHFVLRGMAEKGLTPK-CTQYITLINGMCRVGNFQGAFKLKDEMEALGISSSDVAESAMVRG  920 (1211)
Q Consensus       842 ~~~~~l~~~~~~~g~~~eA~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~  920 (1211)
                      +++..++..|...|++++|+.+++++++  ..|. ...|...+..+-+.|++++|.+.++.+.+.+ ..|..+.+..+..
T Consensus       195 w~~~~lAqhyd~~g~~~~Al~~Id~aI~--htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD-~~DRyiNsK~aKy  271 (517)
T PF12569_consen  195 WTLYFLAQHYDYLGDYEKALEYIDKAIE--HTPTLVELYMTKARILKHAGDLKEAAEAMDEARELD-LADRYINSKCAKY  271 (517)
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHh--cCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCC-hhhHHHHHHHHHH
Confidence            3556777788888888888888888888  7786 4788888888889999999999888888764 4556666667778


Q ss_pred             HHhcCCHHHHHHHHHHHHhCCccc--CH----HHH--HHHHHHhhhhCCHHHHHHHHHHHH
Q 000951          921 LAHCGKVEEAMLVLNRMLRMRLVP--TI----ATF--TTLIHKFCKEAKFVDALKLKGTME  973 (1211)
Q Consensus       921 ~~~~g~~~eA~~~~~~~~~~~~~p--~~----~~~--~~L~~~~~~~g~~~~A~~~~~~~~  973 (1211)
                      +.++|+.++|.+.+....+.+..|  |.    -+|  ..-|.+|.+.|++..|++-|..+.
T Consensus       272 ~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~  332 (517)
T PF12569_consen  272 LLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVL  332 (517)
T ss_pred             HHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            888899999988888877765443  22    234  445677888888888888665543

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.16  E-value=2.4e-08  Score=99.74  Aligned_cols=282  Identities=15%  Similarity=0.067  Sum_probs=137.2

Q ss_pred             HHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCCHHHHHH-HHHHHHHcCCHH
Q 000951          605 TCKSGNLWEAIVLLDEMVQFNLLPDRYTYTILLAGLCRKGKVVSALLFFEKVVSKRTFSPNNVMFTC-LVDGLFKAGQSK  683 (1211)
Q Consensus       605 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~-l~~~~~~~g~~~  683 (1211)
                      +.+..++.+|++++..-.+.. +.+......|..+|....++..|-..|+++..   ..|...-|.. -...+.+.+.+.
T Consensus        20 lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~q---l~P~~~qYrlY~AQSLY~A~i~A   95 (459)
T KOG4340|consen   20 LIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQ---LHPELEQYRLYQAQSLYKACIYA   95 (459)
T ss_pred             HHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHh---hChHHHHHHHHHHHHHHHhcccH
Confidence            344455555555555444432 11333344445555555555555555555544   2333322221 223444555555


Q ss_pred             HHHHHHHHHHhCCCCCCHHHHHHHH--HHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHH
Q 000951          684 AAMHISKIMDKEGVYPDTIAFNAVM--DGFSRMGNMMMANDLLSTMRSRKLCPSLATYNILLHGYSKKKDLLMCSMLLNT  761 (1211)
Q Consensus       684 ~A~~~~~~~~~~g~~~~~~~~~~li--~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~  761 (1211)
                      +|+++...|...   ++...-..-+  ......+++..+..+.++....   .+..+.+..+-...+.|+++.|.+-|+.
T Consensus        96 DALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~e---n~Ad~~in~gCllykegqyEaAvqkFqa  169 (459)
T KOG4340|consen   96 DALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSE---NEADGQINLGCLLYKEGQYEAAVQKFQA  169 (459)
T ss_pred             HHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCC---CccchhccchheeeccccHHHHHHHHHH
Confidence            565555555321   1111111111  1122345555555555555421   1444445555555666666666666666


Q ss_pred             HHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-------------C---------------HhhHHHHH
Q 000951          762 MKMEGLLPDKLTCHSLILGFCETGMLEVGFKFLKKMIAEGTMV-------------D---------------CFTFNVLM  813 (1211)
Q Consensus       762 ~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-------------~---------------~~~~~~l~  813 (1211)
                      +.+.+--....+|+ +.-+..+.++++.|+++..++++.|+..             |               ...+|.-.
T Consensus       170 AlqvsGyqpllAYn-iALaHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKa  248 (459)
T KOG4340|consen  170 ALQVSGYQPLLAYN-LALAHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKA  248 (459)
T ss_pred             HHhhcCCCchhHHH-HHHHHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhh
Confidence            66653333344554 3333445566666666666666654331             1               01122222


Q ss_pred             HHHHhcCcHHHHHHHHHHHHH-CCCCCChhhHHHHHHHHHhhcchhhHHHHHHHHHHcCCCCCh-hHHHHHHHHHHhcCC
Q 000951          814 RKCCEAGEMGKAFDLFNIMNM-LGVVPDTNTQDAIIMGLKRIAAFQESHFVLRGMAEKGLTPKC-TQYITLINGMCRVGN  891 (1211)
Q Consensus       814 ~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~  891 (1211)
                      .++.+.|+++.|.+.+-.|.- .....|++|..+++-.- ..+++-+...-+.=.++  ++|-+ .||-.+.-.||+..-
T Consensus       249 AIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~--~nPfP~ETFANlLllyCKNey  325 (459)
T KOG4340|consen  249 AIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQ--QNPFPPETFANLLLLYCKNEY  325 (459)
T ss_pred             hhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHh--cCCCChHHHHHHHHHHhhhHH
Confidence            345566777777766655531 11223455555444322 23445555555555554  55643 677777777777766


Q ss_pred             hhhHHHHHH
Q 000951          892 FQGAFKLKD  900 (1211)
Q Consensus       892 ~~eA~~~~~  900 (1211)
                      ++-|..++-
T Consensus       326 f~lAADvLA  334 (459)
T KOG4340|consen  326 FDLAADVLA  334 (459)
T ss_pred             HhHHHHHHh
Confidence            666655543

>PF13041 PPR_2: PPR repeat family

Probab=99.15  E-value=8.3e-11  Score=89.19  Aligned_cols=49  Identities=49%  Similarity=0.998  Sum_probs=32.2

Q ss_pred             CCHhHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 000951          208 PNIVTYNTLLNWYCKKGRYKAAFKLIDCMASKGIEADVCTYNMFIDDLC  256 (1211)
Q Consensus       208 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~  256 (1211)
                      ||+++||++|++|++.|++++|.++|++|.+.|++||..||+++|++||
T Consensus         1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~   49 (50)
T PF13041_consen    1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC   49 (50)
T ss_pred             CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence            5666666666666666666666666666666666666666666666655

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=99.15  E-value=6.2e-08  Score=111.68  Aligned_cols=290  Identities=12%  Similarity=0.029  Sum_probs=179.2

Q ss_pred             HHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-h-----
Q 000951          710 GFSRMGNMMMANDLLSTMRSRKLCPSLATYNILLHGYSKKKDLLMCSMLLNTMKMEGLLPDKLTCHSLILGFC-E-----  783 (1211)
Q Consensus       710 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~-~-----  783 (1211)
                      .+...|++++|.+.+..-... +..........+..+.+.|+.++|..+|+.+++  ..|+...|...+..+. .     
T Consensus        13 il~e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~--rNPdn~~Yy~~L~~~~g~~~~~~   89 (517)
T PF12569_consen   13 ILEEAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELID--RNPDNYDYYRGLEEALGLQLQLS   89 (517)
T ss_pred             HHHHCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HCCCcHHHHHHHHHHHhhhcccc
Confidence            345566666666666554432 222233444555666666666666666666666  3465555554443332 1     


Q ss_pred             cCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCcHHH-HHHHHHHHHHCCCCCChhhHHHHHHHHHhhcchhhHHH
Q 000951          784 TGMLEVGFKFLKKMIAEGTMVDCFTFNVLMRKCCEAGEMGK-AFDLFNIMNMLGVVPDTNTQDAIIMGLKRIAAFQESHF  862 (1211)
Q Consensus       784 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~  862 (1211)
                      ....+.-..+|+++...-  |.......+.-.+..-..+.. +......++..|++   .++..+-..|....+..-...
T Consensus        90 ~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvP---slF~~lk~Ly~d~~K~~~i~~  164 (517)
T PF12569_consen   90 DEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVP---SLFSNLKPLYKDPEKAAIIES  164 (517)
T ss_pred             cccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCc---hHHHHHHHHHcChhHHHHHHH
Confidence            123455566666655532  222222222222222122332 22333444444432   344455555554444433334


Q ss_pred             HHHHHHHc----C---------C-CCCh--hHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCC
Q 000951          863 VLRGMAEK----G---------L-TPKC--TQYITLINGMCRVGNFQGAFKLKDEMEALGISSSDVAESAMVRGLAHCGK  926 (1211)
Q Consensus       863 ~~~~~~~~----g---------~-~p~~--~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~  926 (1211)
                      ++......    +         . .|..  .++..++..|...|++++|+++.++++++. |..+..|...+.+|-+.|+
T Consensus       165 l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~ht-Pt~~ely~~KarilKh~G~  243 (517)
T PF12569_consen  165 LVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHT-PTLVELYMTKARILKHAGD  243 (517)
T ss_pred             HHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHCCC
Confidence            44443321    1         1 2222  467888999999999999999999999883 5557788899999999999


Q ss_pred             HHHHHHHHHHHHhCCcccCHHHHHHHHHHhhhhCCHHHHHHHHHHHHhcCCCC--ch----HHHHH--HHHHHHhCCChh
Q 000951          927 VEEAMLVLNRMLRMRLVPTIATFTTLIHKFCKEAKFVDALKLKGTMELSGVKL--DV----VSYNV--LISGLCANGDVM  998 (1211)
Q Consensus       927 ~~eA~~~~~~~~~~~~~p~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~p--~~----~~~~~--l~~~~~~~g~~~  998 (1211)
                      +.+|.+..+.+.+++.. |-..-..-+..+.+.|++++|.+.+......+..|  |.    ..|+.  .+.+|.+.|++.
T Consensus       244 ~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~  322 (517)
T PF12569_consen  244 LKEAAEAMDEARELDLA-DRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYG  322 (517)
T ss_pred             HHHHHHHHHHHHhCChh-hHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHH
Confidence            99999999999999876 77777777888899999999999877766554444  11    24543  455899999999


Q ss_pred             HHHHHHHHHHH
Q 000951          999 PAFELYEEMKH 1009 (1211)
Q Consensus       999 ~a~~~~~~~~~ 1009 (1211)
                      .|.+.+..+.+
T Consensus       323 ~ALk~~~~v~k  333 (517)
T PF12569_consen  323 LALKRFHAVLK  333 (517)
T ss_pred             HHHHHHHHHHH
Confidence            99988876643

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=99.14  E-value=1.7e-08  Score=98.07  Aligned_cols=196  Identities=14%  Similarity=0.093  Sum_probs=132.6

Q ss_pred             HHHHHHHHHHccCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHH
Q 000951          738 TYNILLHGYSKKKDLLMCSMLLNTMKMEGLLP-DKLTCHSLILGFCETGMLEVGFKFLKKMIAEGTMVDCFTFNVLMRKC  816 (1211)
Q Consensus       738 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~  816 (1211)
                      +...|+-.|.+.|++..|..-++++++  ..| +..+|..+...|.+.|+.+.|.+.|++++... +.+-.+.|+.+.-+
T Consensus        37 arlqLal~YL~~gd~~~A~~nlekAL~--~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FL  113 (250)
T COG3063          37 ARLQLALGYLQQGDYAQAKKNLEKALE--HDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFL  113 (250)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHH
Confidence            455667778888888888888888887  556 34577777788888888888888888888742 22456778888888


Q ss_pred             HhcCcHHHHHHHHHHHHHCCCCC-ChhhHHHHHHHHHhhcchhhHHHHHHHHHHcCCCCCh-hHHHHHHHHHHhcCChhh
Q 000951          817 CEAGEMGKAFDLFNIMNMLGVVP-DTNTQDAIIMGLKRIAAFQESHFVLRGMAEKGLTPKC-TQYITLINGMCRVGNFQG  894 (1211)
Q Consensus       817 ~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~e  894 (1211)
                      |.+|++++|...|+++.....-+ ...+|.+++-+-.+.|+.+.|...|++.++  .+|+. .+...++......|++-.
T Consensus       114 C~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~--~dp~~~~~~l~~a~~~~~~~~y~~  191 (250)
T COG3063         114 CAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALE--LDPQFPPALLELARLHYKAGDYAP  191 (250)
T ss_pred             HhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHH--hCcCCChHHHHHHHHHHhcccchH
Confidence            88888888888888877521111 256677777777777777777777777777  66653 556666666677777777


Q ss_pred             HHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 000951          895 AFKLKDEMEALGISSSDVAESAMVRGLAHCGKVEEAMLVLNRMLR  939 (1211)
Q Consensus       895 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~  939 (1211)
                      |..+++.....+ .+....+-.-+.+-.+.|+.+.|.+.=.+..+
T Consensus       192 Ar~~~~~~~~~~-~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r  235 (250)
T COG3063         192 ARLYLERYQQRG-GAQAESLLLGIRIAKRLGDRAAAQRYQAQLQR  235 (250)
T ss_pred             HHHHHHHHHhcc-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence            777766665543 25555555445555556665555554444443

>PF13041 PPR_2: PPR repeat family

Probab=99.14  E-value=8.9e-11  Score=89.03  Aligned_cols=49  Identities=43%  Similarity=0.969  Sum_probs=26.5

Q ss_pred             CChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHhHHHHHHHHHH
Q 000951          313 PNSITYNELIDGHCCKGNFKEAFRLLAMMEEMGLRPNEVSYGALLNGFC  361 (1211)
Q Consensus       313 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~  361 (1211)
                      ||+++||++|++|++.|++++|.++|++|.+.|+.||..||+.+|++||
T Consensus         1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~   49 (50)
T PF13041_consen    1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC   49 (50)
T ss_pred             CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence            4555555555555555555555555555555555555555555555554

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.13  E-value=1.3e-06  Score=96.23  Aligned_cols=224  Identities=13%  Similarity=0.057  Sum_probs=119.8

Q ss_pred             HHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 000951          216 LLNWYCKKGRYKAAFKLIDCMASKGIEADVCTYNMFIDDLCRNNRSAKGYLLLKNMRKRMITPNEVTYNTLINGFVKEGK  295 (1211)
Q Consensus       216 li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~  295 (1211)
                      =++.+.+.|++++|.+...++...+ +-|...+..-+-++.+.+++++|+.+.+.-...  ..+.+-+-.=..+..+.++
T Consensus        18 ~ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~--~~~~~~~fEKAYc~Yrlnk   94 (652)
T KOG2376|consen   18 DLNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGAL--LVINSFFFEKAYCEYRLNK   94 (652)
T ss_pred             HHHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchh--hhcchhhHHHHHHHHHccc
Confidence            3455666777778887777777654 445566666666777777777777444332110  0011111111233457788


Q ss_pred             HHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHh-HHHHHHHHHHhcCChHHHHHHHH
Q 000951          296 IQVASRVFDEMSMLNFSPNSITYNELIDGHCCKGNFKEAFRLLAMMEEMGLRPNEV-SYGALLNGFCKHAKFDLARSLLE  374 (1211)
Q Consensus       296 ~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~g~~~~a~~l~~  374 (1211)
                      .|+|...++-...    -|..+...-.+.+.+.|++++|+++|+.+.+.+...-.. .-..++.+-    ..-.+. +  
T Consensus        95 ~Dealk~~~~~~~----~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~----a~l~~~-~--  163 (652)
T KOG2376|consen   95 LDEALKTLKGLDR----LDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVA----AALQVQ-L--  163 (652)
T ss_pred             HHHHHHHHhcccc----cchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHH----HhhhHH-H--
Confidence            8888888873221    133456666677888899999999998887765322111 111111111    111111 1  


Q ss_pred             HHHHCCCCc--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC--------CC-CCHh-----hHHHHHHHHHhcCCHHH
Q 000951          375 RMRTNGISI--SCIAYTSVIDGLCKCGLLDEAMQLFNKMFKDG--------LN-PDLI-----TFSVLINGFCKVGMTRK  438 (1211)
Q Consensus       375 ~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--------~~-p~~~-----~~~~li~~~~~~g~~~~  438 (1211)
                       +......|  +-..+......+...|++.+|+++++...+.+        .. -+..     .-..|...+-..|+..+
T Consensus       164 -~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~e  242 (652)
T KOG2376|consen  164 -LQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAE  242 (652)
T ss_pred             -HHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHH
Confidence             11111112  11222223445667788888888887773211        00 0111     11223344556788888


Q ss_pred             HHHHHHHHHHCCCCCCH
Q 000951          439 AKAVLCKMYRDGLVPNK  455 (1211)
Q Consensus       439 A~~~~~~m~~~g~~p~~  455 (1211)
                      |..++...+... ++|.
T Consensus       243 a~~iy~~~i~~~-~~D~  258 (652)
T KOG2376|consen  243 ASSIYVDIIKRN-PADE  258 (652)
T ss_pred             HHHHHHHHHHhc-CCCc
Confidence            888877777765 3443

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.12  E-value=5.7e-09  Score=114.52  Aligned_cols=249  Identities=11%  Similarity=0.012  Sum_probs=173.8

Q ss_pred             HHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhcch
Q 000951          778 ILGFCETGMLEVGFKFLKKMIAEGTMVDCFTFNVLMRKCCEAGEMGKAFDLFNIMNMLGVVPDTNTQDAIIMGLKRIAAF  857 (1211)
Q Consensus       778 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~  857 (1211)
                      +.-+.+.|++.+|.-.|+.+++.+ +.+...|..|+......++-..|+..+++.++.. +.+.....+|+-.|...|.-
T Consensus       292 G~~lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q  369 (579)
T KOG1125|consen  292 GCNLMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQ  369 (579)
T ss_pred             HHHHHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhH
Confidence            334556677777777777777652 2345677777777777777777777777777643 23466677777777777777


Q ss_pred             hhHHHHHHHHHHcCCCCChhHHHHH------H--HHHHhcCChhhHHHHHHHHH-HcCCCCchHHHHHHHHHHHhcCCHH
Q 000951          858 QESHFVLRGMAEKGLTPKCTQYITL------I--NGMCRVGNFQGAFKLKDEME-ALGISSSDVAESAMVRGLAHCGKVE  928 (1211)
Q Consensus       858 ~eA~~~~~~~~~~g~~p~~~~~~~l------~--~~~~~~g~~~eA~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~  928 (1211)
                      .+|+.++.+.+.  ..|.......-      .  ........+....++|-.+. +.+...|+.+...|+.+|.-.|+++
T Consensus       370 ~~Al~~L~~Wi~--~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efd  447 (579)
T KOG1125|consen  370 NQALKMLDKWIR--NKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFD  447 (579)
T ss_pred             HHHHHHHHHHHH--hCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHH
Confidence            777777777765  22211000000      0  00011112233445555554 5555689999999999999999999


Q ss_pred             HHHHHHHHHHhCCcccCHHHHHHHHHHhhhhCCHHHHHHHHHHHHhcCCCCchH-HHHHHHHHHHhCCChhHHHHHHHHH
Q 000951          929 EAMLVLNRMLRMRLVPTIATFTTLIHKFCKEAKFVDALKLKGTMELSGVKLDVV-SYNVLISGLCANGDVMPAFELYEEM 1007 (1211)
Q Consensus       929 eA~~~~~~~~~~~~~p~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~ 1007 (1211)
                      +|++.|+.++...|. |...|+.||..++...+.+||+..|++..++  .|... ++++|+-.|...|.+++|.+++-..
T Consensus       448 raiDcf~~AL~v~Pn-d~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~yVR~RyNlgIS~mNlG~ykEA~~hlL~A  524 (579)
T KOG1125|consen  448 RAVDCFEAALQVKPN-DYLLWNRLGATLANGNRSEEAISAYNRALQL--QPGYVRVRYNLGISCMNLGAYKEAVKHLLEA  524 (579)
T ss_pred             HHHHHHHHHHhcCCc-hHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--CCCeeeeehhhhhhhhhhhhHHHHHHHHHHH
Confidence            999999999998876 9999999999999999999999999876665  99877 8899999999999999999998765


Q ss_pred             HH---cCCc--cC----hhhHHHHHHHHHhcccch
Q 000951         1008 KH---KGLC--PN----STTYSVLIDAISKKENNL 1033 (1211)
Q Consensus      1008 ~~---~g~~--p~----~~~~~~l~~~~~~~~~~~ 1033 (1211)
                      +.   ++-.  ..    ...|..+-..+.-.++.+
T Consensus       525 L~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D  559 (579)
T KOG1125|consen  525 LSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSD  559 (579)
T ss_pred             HHhhhcccccccCCcchHHHHHHHHHHHHHcCCch
Confidence            43   2111  11    246777766666666544

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.09  E-value=4.2e-06  Score=92.44  Aligned_cols=120  Identities=16%  Similarity=0.070  Sum_probs=67.0

Q ss_pred             HHHHHHHHhcCcHHHHHHHHH--------HHHHCCCCCChhhHHHHHHHHHhhcchhhHHHHHHHHHH-----cCCCCCh
Q 000951          810 NVLMRKCCEAGEMGKAFDLFN--------IMNMLGVVPDTNTQDAIIMGLKRIAAFQESHFVLRGMAE-----KGLTPKC  876 (1211)
Q Consensus       810 ~~l~~~~~~~g~~~~A~~~~~--------~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~-----~g~~p~~  876 (1211)
                      -..+......|+++.|++++.        ...+.+..|.  +-.++...|.+.+..+-|..++.+++.     ..-.+..
T Consensus       380 L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P~--~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l  457 (652)
T KOG2376|consen  380 LLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLPG--TVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIAL  457 (652)
T ss_pred             HHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccChh--HHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHH
Confidence            333444445555555555555        3333332222  223344444444444444444444332     0011221


Q ss_pred             -hHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHH
Q 000951          877 -TQYITLINGMCRVGNFQGAFKLKDEMEALGISSSDVAESAMVRGLAHCGKVEEAMLV  933 (1211)
Q Consensus       877 -~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~  933 (1211)
                       ..+..++..-.+.|+-++|...++++.+. .+++..+...++.+|++.. .+.|..+
T Consensus       458 ~~~~~~aa~f~lr~G~~~ea~s~leel~k~-n~~d~~~l~~lV~a~~~~d-~eka~~l  513 (652)
T KOG2376|consen  458 LSLMREAAEFKLRHGNEEEASSLLEELVKF-NPNDTDLLVQLVTAYARLD-PEKAESL  513 (652)
T ss_pred             HhHHHHHhHHHHhcCchHHHHHHHHHHHHh-CCchHHHHHHHHHHHHhcC-HHHHHHH
Confidence             44555555666779999999999999876 4778888888888888765 6677765

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=99.05  E-value=4.3e-07  Score=103.98  Aligned_cols=200  Identities=11%  Similarity=0.033  Sum_probs=98.5

Q ss_pred             HHHHHHHHHHHHccCChHHHHHHHHHHHHCCC-CCCHHH-HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHH
Q 000951          736 LATYNILLHGYSKKKDLLMCSMLLNTMKMEGL-LPDKLT-CHSLILGFCETGMLEVGFKFLKKMIAEGTMVDCFTFNVLM  813 (1211)
Q Consensus       736 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~-~p~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~  813 (1211)
                      ...|..++..+...|+.+.+...+....+... .++... .......+...|++++|.+.++++++.. +.+...+.. .
T Consensus         6 ~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~-~   83 (355)
T cd05804           6 ALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKL-H   83 (355)
T ss_pred             HHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHH-h
Confidence            44455555555555555555555555443211 112111 1112234445566666666666666542 222222221 2


Q ss_pred             HHHHh----cCcHHHHHHHHHHHHHCCCCCC-hhhHHHHHHHHHhhcchhhHHHHHHHHHHcCCCCCh-hHHHHHHHHHH
Q 000951          814 RKCCE----AGEMGKAFDLFNIMNMLGVVPD-TNTQDAIIMGLKRIAAFQESHFVLRGMAEKGLTPKC-TQYITLINGMC  887 (1211)
Q Consensus       814 ~~~~~----~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~g~~p~~-~~~~~l~~~~~  887 (1211)
                      ..+..    .+..+.+.+.++...  ...|+ ......++..+...|++++|+..++++++  ..|+. ..+..++.++.
T Consensus        84 ~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~--~~p~~~~~~~~la~i~~  159 (355)
T cd05804          84 LGAFGLGDFSGMRDHVARVLPLWA--PENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALE--LNPDDAWAVHAVAHVLE  159 (355)
T ss_pred             HHHHHhcccccCchhHHHHHhccC--cCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCCcHHHHHHHHHHH
Confidence            12222    233333333333211  11122 23334455566666667777777777666  55543 45566666666


Q ss_pred             hcCChhhHHHHHHHHHHcCC-CCch--HHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 000951          888 RVGNFQGAFKLKDEMEALGI-SSSD--VAESAMVRGLAHCGKVEEAMLVLNRMLRMR  941 (1211)
Q Consensus       888 ~~g~~~eA~~~~~~~~~~~~-~~~~--~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~  941 (1211)
                      ..|++++|...+++.++... +++.  ..|..++..+...|++++|+..|+++....
T Consensus       160 ~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~  216 (355)
T cd05804         160 MQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPS  216 (355)
T ss_pred             HcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccc
Confidence            77777777777766664321 1121  123456666667777777777777665443

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>PLN02789 farnesyltranstransferase

Probab=99.01  E-value=1.3e-07  Score=103.03  Aligned_cols=203  Identities=7%  Similarity=-0.019  Sum_probs=138.2

Q ss_pred             HhcCChHHHHHHHHHHHHcCCCCC-HhhHHHHHHHHHhcC-cHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhcch--
Q 000951          782 CETGMLEVGFKFLKKMIAEGTMVD-CFTFNVLMRKCCEAG-EMGKAFDLFNIMNMLGVVPDTNTQDAIIMGLKRIAAF--  857 (1211)
Q Consensus       782 ~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~--  857 (1211)
                      ...++.++|+..+.++++.  .|+ ..+|+....++...| .++++++.++++++.+ +.+..+|+....++.+.|+.  
T Consensus        48 ~~~e~serAL~lt~~aI~l--nP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l~~l~~~~~  124 (320)
T PLN02789         48 ASDERSPRALDLTADVIRL--NPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLAEKLGPDAA  124 (320)
T ss_pred             HcCCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHHHHcCchhh
Confidence            3456667777777777763  333 445666666666666 4677777777777643 23455676666666666653  


Q ss_pred             hhHHHHHHHHHHcCCCCCh-hHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCchHHHHHHHHHHHhc---CC----HHH
Q 000951          858 QESHFVLRGMAEKGLTPKC-TQYITLINGMCRVGNFQGAFKLKDEMEALGISSSDVAESAMVRGLAHC---GK----VEE  929 (1211)
Q Consensus       858 ~eA~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~----~~e  929 (1211)
                      ++++..++++++  .+|+. .+|...+.++.+.|++++|++.++++++.+ +.+..+|+..+.++.+.   |.    .++
T Consensus       125 ~~el~~~~kal~--~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d-~~N~sAW~~R~~vl~~~~~l~~~~~~~e~  201 (320)
T PLN02789        125 NKELEFTRKILS--LDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEED-VRNNSAWNQRYFVITRSPLLGGLEAMRDS  201 (320)
T ss_pred             HHHHHHHHHHHH--hCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHC-CCchhHHHHHHHHHHhccccccccccHHH
Confidence            567777778877  77754 778888888888888888888888888764 55666777777666554   22    256


Q ss_pred             HHHHHHHHHhCCcccCHHHHHHHHHHhhhh----CCHHHHHHHHHHHHhcCCCCchH-HHHHHHHHHHh
Q 000951          930 AMLVLNRMLRMRLVPTIATFTTLIHKFCKE----AKFVDALKLKGTMELSGVKLDVV-SYNVLISGLCA  993 (1211)
Q Consensus       930 A~~~~~~~~~~~~~p~~~~~~~L~~~~~~~----g~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~  993 (1211)
                      ++++..++++..|. |..+|+.++.++...    ++..+|...+.....  ..|+.. ....|+..|+.
T Consensus       202 el~y~~~aI~~~P~-N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~--~~~~s~~al~~l~d~~~~  267 (320)
T PLN02789        202 ELKYTIDAILANPR-NESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLS--KDSNHVFALSDLLDLLCE  267 (320)
T ss_pred             HHHHHHHHHHhCCC-CcCHHHHHHHHHhcCCcccccchhHHHHHHHhhc--ccCCcHHHHHHHHHHHHh
Confidence            78888888888776 888999999888873    455678777655443  356444 67778887775

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.00  E-value=3.6e-08  Score=108.41  Aligned_cols=258  Identities=14%  Similarity=0.074  Sum_probs=146.4

Q ss_pred             HHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCChH
Q 000951          711 FSRMGNMMMANDLLSTMRSRKLCP-SLATYNILLHGYSKKKDLLMCSMLLNTMKMEGLLPDK-LTCHSLILGFCETGMLE  788 (1211)
Q Consensus       711 ~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~  788 (1211)
                      +.+.|++.+|.-.|+..++.  .| +...|..|+......++-..|+..+++.++  ++|+. .....|...|...|.-.
T Consensus       295 lm~nG~L~~A~LafEAAVkq--dP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~--LdP~NleaLmaLAVSytNeg~q~  370 (579)
T KOG1125|consen  295 LMKNGDLSEAALAFEAAVKQ--DPQHAEAWQKLGITQAENENEQNAISALRRCLE--LDPTNLEALMALAVSYTNEGLQN  370 (579)
T ss_pred             HHhcCCchHHHHHHHHHHhh--ChHHHHHHHHhhhHhhhccchHHHHHHHHHHHh--cCCccHHHHHHHHHHHhhhhhHH
Confidence            55788888898889888865  56 788899999999999999999999999988  77844 56677888888888888


Q ss_pred             HHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhcchhhHHHHHHHHH
Q 000951          789 VGFKFLKKMIAEGTMVDCFTFNVLMRKCCEAGEMGKAFDLFNIMNMLGVVPDTNTQDAIIMGLKRIAAFQESHFVLRGMA  868 (1211)
Q Consensus       789 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~  868 (1211)
                      +|++.++.-+...++     |..+... ...+.+..-          +-.++...             +..-.++|-++.
T Consensus       371 ~Al~~L~~Wi~~~p~-----y~~l~~a-~~~~~~~~~----------~s~~~~~~-------------l~~i~~~fLeaa  421 (579)
T KOG1125|consen  371 QALKMLDKWIRNKPK-----YVHLVSA-GENEDFENT----------KSFLDSSH-------------LAHIQELFLEAA  421 (579)
T ss_pred             HHHHHHHHHHHhCcc-----chhcccc-CccccccCC----------cCCCCHHH-------------HHHHHHHHHHHH
Confidence            899988888764221     0000000 000000000          00011111             111122222222


Q ss_pred             -HcCCCCChhHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCcccCHH
Q 000951          869 -EKGLTPKCTQYITLINGMCRVGNFQGAFKLKDEMEALGISSSDVAESAMVRGLAHCGKVEEAMLVLNRMLRMRLVPTIA  947 (1211)
Q Consensus       869 -~~g~~p~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~p~~~  947 (1211)
                       +.+..+|+..+..|+-.|.-.|+++.|...|+.++... |.|...|+.||..++...+.+||+..|++++++.|. -+.
T Consensus       422 ~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~-Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~-yVR  499 (579)
T KOG1125|consen  422 RQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVK-PNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPG-YVR  499 (579)
T ss_pred             HhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcC-CchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCC-eee
Confidence             23333444555555555556666666666666665442 444555666666666666666666666666665433 445


Q ss_pred             HHHHHHHHhhhhCCHHHHHHHHHH---HHhcCC----CC--chHHHHHHHHHHHhCCChhHHHHH
Q 000951          948 TFTTLIHKFCKEAKFVDALKLKGT---MELSGV----KL--DVVSYNVLISGLCANGDVMPAFEL 1003 (1211)
Q Consensus       948 ~~~~L~~~~~~~g~~~~A~~~~~~---~~~~~~----~p--~~~~~~~l~~~~~~~g~~~~a~~~ 1003 (1211)
                      ++.+||-.|...|.|+||.+.|-.   |+..+-    .|  +...|.+|-.++...++.|.+.++
T Consensus       500 ~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a  564 (579)
T KOG1125|consen  500 VRYNLGISCMNLGAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEA  564 (579)
T ss_pred             eehhhhhhhhhhhhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHHh
Confidence            666666666666666666554332   111110    11  123555555555555555544443

>PLN02789 farnesyltranstransferase

Probab=98.96  E-value=3.5e-07  Score=99.69  Aligned_cols=206  Identities=11%  Similarity=0.058  Sum_probs=148.8

Q ss_pred             HHHccCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcC-ChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCcH
Q 000951          745 GYSKKKDLLMCSMLLNTMKMEGLLPDK-LTCHSLILGFCETG-MLEVGFKFLKKMIAEGTMVDCFTFNVLMRKCCEAGEM  822 (1211)
Q Consensus       745 ~~~~~g~~~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~  822 (1211)
                      .+...+..++|+..+.++++  +.|+. .+|+....++...| .+++++..++++++.+. .+..+|+....++.+.|+.
T Consensus        46 ~l~~~e~serAL~lt~~aI~--lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~np-knyqaW~~R~~~l~~l~~~  122 (320)
T PLN02789         46 VYASDERSPRALDLTADVIR--LNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNP-KNYQIWHHRRWLAEKLGPD  122 (320)
T ss_pred             HHHcCCCCHHHHHHHHHHHH--HCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCC-cchHHhHHHHHHHHHcCch
Confidence            34445677888888888887  56744 45666666666666 57888888888887532 2455677666666666653


Q ss_pred             --HHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhcchhhHHHHHHHHHHcCCCCC-hhHHHHHHHHHHhc---CCh----
Q 000951          823 --GKAFDLFNIMNMLGVVPDTNTQDAIIMGLKRIAAFQESHFVLRGMAEKGLTPK-CTQYITLINGMCRV---GNF----  892 (1211)
Q Consensus       823 --~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~---g~~----  892 (1211)
                        +++++.++++++.+ +.+..+|+..+.++...|++++|+..++++++  .+|. ..+|...+.++.+.   |..    
T Consensus       123 ~~~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~--~d~~N~sAW~~R~~vl~~~~~l~~~~~~~  199 (320)
T PLN02789        123 AANKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLE--EDVRNNSAWNQRYFVITRSPLLGGLEAMR  199 (320)
T ss_pred             hhHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHH--HCCCchhHHHHHHHHHHhccccccccccH
Confidence              67788888887754 34677888888888888888888888888888  6674 46677777666554   222    


Q ss_pred             hhHHHHHHHHHHcCCCCchHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCcccCHHHHHHHHHHhhh
Q 000951          893 QGAFKLKDEMEALGISSSDVAESAMVRGLAH----CGKVEEAMLVLNRMLRMRLVPTIATFTTLIHKFCK  958 (1211)
Q Consensus       893 ~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~eA~~~~~~~~~~~~~p~~~~~~~L~~~~~~  958 (1211)
                      ++++++..+++.. .|.+..+|+.+..++..    .++..+|.+++.++++.++. +..++..|+.+|+.
T Consensus       200 e~el~y~~~aI~~-~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~-s~~al~~l~d~~~~  267 (320)
T PLN02789        200 DSELKYTIDAILA-NPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSN-HVFALSDLLDLLCE  267 (320)
T ss_pred             HHHHHHHHHHHHh-CCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCC-cHHHHHHHHHHHHh
Confidence            4677777777766 36777788888888877    34567788998888887655 77788888888875

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=98.96  E-value=2.3e-06  Score=98.07  Aligned_cols=97  Identities=13%  Similarity=0.111  Sum_probs=61.8

Q ss_pred             HHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-CCH--hhHHH
Q 000951          736 LATYNILLHGYSKKKDLLMCSMLLNTMKMEGLLPD-KLTCHSLILGFCETGMLEVGFKFLKKMIAEGTM-VDC--FTFNV  811 (1211)
Q Consensus       736 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~--~~~~~  811 (1211)
                      ......++..+...|++++|...++++++  ..|+ ...+..+..++...|++++|+..+++.+..... ++.  ..+..
T Consensus       114 ~~~~~~~a~~~~~~G~~~~A~~~~~~al~--~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~  191 (355)
T cd05804         114 WYLLGMLAFGLEEAGQYDRAEEAARRALE--LNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWH  191 (355)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHH
Confidence            34445556667777777777777777776  3443 345556667777777777777777777664221 222  23445


Q ss_pred             HHHHHHhcCcHHHHHHHHHHHHH
Q 000951          812 LMRKCCEAGEMGKAFDLFNIMNM  834 (1211)
Q Consensus       812 l~~~~~~~g~~~~A~~~~~~~~~  834 (1211)
                      +..++...|++++|++.|+++..
T Consensus       192 la~~~~~~G~~~~A~~~~~~~~~  214 (355)
T cd05804         192 LALFYLERGDYEAALAIYDTHIA  214 (355)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHhc
Confidence            66777777777777777777653

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.89  E-value=2.5e-06  Score=85.68  Aligned_cols=315  Identities=14%  Similarity=0.123  Sum_probs=196.5

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChHHHHHH-HHHHH
Q 000951          248 YNMFIDDLCRNNRSAKGYLLLKNMRKRMITPNEVTYNTLINGFVKEGKIQVASRVFDEMSMLNFSPNSITYNEL-IDGHC  326 (1211)
Q Consensus       248 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l-i~~~~  326 (1211)
                      +.+.+..+.+..++.+|++++....+..+. +....+.|..+|....++..|...++++...  .|...-|... .+.+.
T Consensus        13 ftaviy~lI~d~ry~DaI~~l~s~~Er~p~-~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY   89 (459)
T KOG4340|consen   13 FTAVVYRLIRDARYADAIQLLGSELERSPR-SRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSLY   89 (459)
T ss_pred             hHHHHHHHHHHhhHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHH
Confidence            444555556666777777776666555332 6667788888888888999999999888765  4554444432 45677


Q ss_pred             hcCCHHHHHHHHHHHHHCCCCcCHhHHHHHHHH--HHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHH
Q 000951          327 CKGNFKEAFRLLAMMEEMGLRPNEVSYGALLNG--FCKHAKFDLARSLLERMRTNGISISCIAYTSVIDGLCKCGLLDEA  404 (1211)
Q Consensus       327 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~--~~~~g~~~~a~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A  404 (1211)
                      +.+.+.+|+++...|...   |+...-..-+.+  ....+++..+..+.++....|   +..+.+.....+.+.|++++|
T Consensus        90 ~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyEaA  163 (459)
T KOG4340|consen   90 KACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYEAA  163 (459)
T ss_pred             HhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccHHHH
Confidence            888999999998888653   333333333333  335788888888888766433   334455555667789999999


Q ss_pred             HHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH----HHHHHHHHHcCCHHHHHHHHHH
Q 000951          405 MQLFNKMFKDGLNPDLITFSVLINGFCKVGMTRKAKAVLCKMYRDGLVPNKIIY----STLIYYFCKMGKVTEAMKVYAV  480 (1211)
Q Consensus       405 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~----~~li~~~~~~g~~~~A~~~~~~  480 (1211)
                      .+-|+...+-|--.....||..+..| +.|+++.|++...+.+++|++..+..-    +-.+++- ..|+   -..++..
T Consensus       164 vqkFqaAlqvsGyqpllAYniALaHy-~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvr-svgN---t~~lh~S  238 (459)
T KOG4340|consen  164 VQKFQAALQVSGYQPLLAYNLALAHY-SSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVR-SVGN---TLVLHQS  238 (459)
T ss_pred             HHHHHHHHhhcCCCchhHHHHHHHHH-hhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchh-cccc---hHHHHHH
Confidence            99999887754333456777666544 678899999999999888764322110    0000000 0010   0111111


Q ss_pred             HHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhc-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 000951          481 MNRNAQGSDHFTCNMLVASLCKGGKVCEAEDYVGHMKRI-GVVPNSITFDCMIDGYGTLGDGLKAFSMFDEMVKLGHHPS  559 (1211)
Q Consensus       481 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~  559 (1211)
                      .       -+..+|.-...+.+.++++.|.+.+..|... .-..|++|...+.-.- ..+++.+..+-+.-+++... -.
T Consensus       239 a-------l~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~nP-fP  309 (459)
T KOG4340|consen  239 A-------LVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQNP-FP  309 (459)
T ss_pred             H-------HHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcCC-CC
Confidence            1       1123444445567788888888888887632 1234666665543221 24455555555555665433 23


Q ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHHH
Q 000951          560 IFTYGSLLKGLCKGGNLKEAKRFLNS  585 (1211)
Q Consensus       560 ~~~~~~ll~~~~~~g~~~~A~~~~~~  585 (1211)
                      ..||..++-.||+..-++.|..++.+
T Consensus       310 ~ETFANlLllyCKNeyf~lAADvLAE  335 (459)
T KOG4340|consen  310 PETFANLLLLYCKNEYFDLAADVLAE  335 (459)
T ss_pred             hHHHHHHHHHHhhhHHHhHHHHHHhh
Confidence            57888888899998888888877655

>PRK04841 transcriptional regulator MalT; Provisional

Probab=98.84  E-value=8e-06  Score=106.38  Aligned_cols=265  Identities=12%  Similarity=-0.012  Sum_probs=134.7

Q ss_pred             HHHccCChHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC---C--CHhhHHHHHHH
Q 000951          745 GYSKKKDLLMCSMLLNTMKMEGLLPDK----LTCHSLILGFCETGMLEVGFKFLKKMIAEGTM---V--DCFTFNVLMRK  815 (1211)
Q Consensus       745 ~~~~~g~~~~A~~~~~~~~~~g~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~--~~~~~~~l~~~  815 (1211)
                      .+...|++++|...+++..+.-...+.    ...+.+...+...|++++|...++++......   +  .......+..+
T Consensus       461 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~  540 (903)
T PRK04841        461 VAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEI  540 (903)
T ss_pred             HHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHH
Confidence            344455555555555555442101111    12233444555566666666666665532100   0  11233444555


Q ss_pred             HHhcCcHHHHHHHHHHHHH----CCCC--C-ChhhHHHHHHHHHhhcchhhHHHHHHHHHHc--CCCCC--hhHHHHHHH
Q 000951          816 CCEAGEMGKAFDLFNIMNM----LGVV--P-DTNTQDAIIMGLKRIAAFQESHFVLRGMAEK--GLTPK--CTQYITLIN  884 (1211)
Q Consensus       816 ~~~~g~~~~A~~~~~~~~~----~~~~--~-~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~--g~~p~--~~~~~~l~~  884 (1211)
                      +...|++++|.+.+++...    .+..  + ....+..++..+...|++++|...+.+++..  ...|.  ...+..++.
T Consensus       541 ~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~  620 (903)
T PRK04841        541 LFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAK  620 (903)
T ss_pred             HHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHH
Confidence            6666666666666655533    1110  0 1122334455556667777777666666541  11121  234445666


Q ss_pred             HHHhcCChhhHHHHHHHHHHcCCC-CchHHH-----HHHHHHHHhcCCHHHHHHHHHHHHhCCcccC---HHHHHHHHHH
Q 000951          885 GMCRVGNFQGAFKLKDEMEALGIS-SSDVAE-----SAMVRGLAHCGKVEEAMLVLNRMLRMRLVPT---IATFTTLIHK  955 (1211)
Q Consensus       885 ~~~~~g~~~eA~~~~~~~~~~~~~-~~~~~~-----~~l~~~~~~~g~~~eA~~~~~~~~~~~~~p~---~~~~~~L~~~  955 (1211)
                      ++...|++++|...++++...... .....+     ......+...|+.+.|...+...........   ...+..++.+
T Consensus       621 ~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~  700 (903)
T PRK04841        621 ISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARA  700 (903)
T ss_pred             HHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHH
Confidence            666777777777777776432111 000101     0112334446777777777666543211111   1124556777


Q ss_pred             hhhhCCHHHHHHHHHHHHhc----CCCCch-HHHHHHHHHHHhCCChhHHHHHHHHHHH
Q 000951          956 FCKEAKFVDALKLKGTMELS----GVKLDV-VSYNVLISGLCANGDVMPAFELYEEMKH 1009 (1211)
Q Consensus       956 ~~~~g~~~~A~~~~~~~~~~----~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 1009 (1211)
                      +...|++++|...++.....    +..++. .++..++.+|...|+.++|...+.+..+
T Consensus       701 ~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~  759 (903)
T PRK04841        701 QILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALK  759 (903)
T ss_pred             HHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            77778888887776654432    111222 2455666677788888888888777765

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=98.78  E-value=1.6e-07  Score=90.22  Aligned_cols=113  Identities=10%  Similarity=-0.113  Sum_probs=66.4

Q ss_pred             HHHHHHHHcCCCCChhHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 000951          862 FVLRGMAEKGLTPKCTQYITLINGMCRVGNFQGAFKLKDEMEALGISSSDVAESAMVRGLAHCGKVEEAMLVLNRMLRMR  941 (1211)
Q Consensus       862 ~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~  941 (1211)
                      .+|++.++  ++|+.  +..++.++...|++++|...|+.++... +.+..++..++.++...|++++|+..|+++++.+
T Consensus        14 ~~~~~al~--~~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~   88 (144)
T PRK15359         14 DILKQLLS--VDPET--VYASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD   88 (144)
T ss_pred             HHHHHHHH--cCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence            34555555  44543  3345556666666666666666665542 4455566666666666666666666666666655


Q ss_pred             cccCHHHHHHHHHHhhhhCCHHHHHHHHHHHHhcCCCCchH
Q 000951          942 LVPTIATFTTLIHKFCKEAKFVDALKLKGTMELSGVKLDVV  982 (1211)
Q Consensus       942 ~~p~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~  982 (1211)
                      |. ++..|..+|.++...|++++|+..|+.....  .|+..
T Consensus        89 p~-~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~--~p~~~  126 (144)
T PRK15359         89 AS-HPEPVYQTGVCLKMMGEPGLAREAFQTAIKM--SYADA  126 (144)
T ss_pred             CC-CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCh
Confidence            44 6666666666666666666666666554443  55443

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.78  E-value=9.6e-08  Score=102.74  Aligned_cols=149  Identities=15%  Similarity=0.111  Sum_probs=67.1

Q ss_pred             HHHhcCcHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhcchhhHHHHHHHHHHcCCCCChhHHHHHHHHHH--hc--C
Q 000951          815 KCCEAGEMGKAFDLFNIMNMLGVVPDTNTQDAIIMGLKRIAAFQESHFVLRGMAEKGLTPKCTQYITLINGMC--RV--G  890 (1211)
Q Consensus       815 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~g~~p~~~~~~~l~~~~~--~~--g  890 (1211)
                      +|...|++++|++++++.      .+.+.....+.+|.+.++++.|...++.|.+  +..|. +...++.++.  ..  .
T Consensus       111 i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~--~~eD~-~l~qLa~awv~l~~g~e  181 (290)
T PF04733_consen  111 ILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQ--IDEDS-ILTQLAEAWVNLATGGE  181 (290)
T ss_dssp             HHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHC--CSCCH-HHHHHHHHHHHHHHTTT
T ss_pred             HHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCcH-HHHHHHHHHHHHHhCch
Confidence            344445555555444321      1233333344445555555555555555544  33332 1222222222  12  2


Q ss_pred             ChhhHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCcccCHHHHHHHHHHhhhhCCH-HHHHHHH
Q 000951          891 NFQGAFKLKDEMEALGISSSDVAESAMVRGLAHCGKVEEAMLVLNRMLRMRLVPTIATFTTLIHKFCKEAKF-VDALKLK  969 (1211)
Q Consensus       891 ~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~p~~~~~~~L~~~~~~~g~~-~~A~~~~  969 (1211)
                      .+++|..+|+++.+. .++++.+.+.++.+....|++++|.++++++++.++. ++.++.+++-+....|+. +.+.+.+
T Consensus       182 ~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~-~~d~LaNliv~~~~~gk~~~~~~~~l  259 (290)
T PF04733_consen  182 KYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPN-DPDTLANLIVCSLHLGKPTEAAERYL  259 (290)
T ss_dssp             CCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CC-HHHHHHHHHHHHHHTT-TCHHHHHHH
T ss_pred             hHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccC-CHHHHHHHHHHHHHhCCChhHHHHHH
Confidence            455566666655432 3445555555555555566666666666655555444 555555555555555555 3333444


Q ss_pred             HHHHh
Q 000951          970 GTMEL  974 (1211)
Q Consensus       970 ~~~~~  974 (1211)
                      .+++.
T Consensus       260 ~qL~~  264 (290)
T PF04733_consen  260 SQLKQ  264 (290)
T ss_dssp             HHCHH
T ss_pred             HHHHH
Confidence            44443

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>PRK04841 transcriptional regulator MalT; Provisional

Probab=98.76  E-value=1.8e-05  Score=103.08  Aligned_cols=265  Identities=9%  Similarity=-0.018  Sum_probs=142.1

Q ss_pred             HHhcCChHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHccCChHHHHHHHHHHHHCCC---CCC--HHHHHHHHHHH
Q 000951          711 FSRMGNMMMANDLLSTMRSRKLCPS----LATYNILLHGYSKKKDLLMCSMLLNTMKMEGL---LPD--KLTCHSLILGF  781 (1211)
Q Consensus       711 ~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~---~p~--~~~~~~l~~~~  781 (1211)
                      +...|++++|...+++..+.....+    ....+.++..+...|++++|...+.++....-   .+.  ..++..+..++
T Consensus       462 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~  541 (903)
T PRK04841        462 AINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEIL  541 (903)
T ss_pred             HHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHH
Confidence            3446666666666666553211111    12334455556666777777666666553210   011  12334445566


Q ss_pred             HhcCChHHHHHHHHHHHHc----CCC--C-CHhhHHHHHHHHHhcCcHHHHHHHHHHHHHCC--CCC--ChhhHHHHHHH
Q 000951          782 CETGMLEVGFKFLKKMIAE----GTM--V-DCFTFNVLMRKCCEAGEMGKAFDLFNIMNMLG--VVP--DTNTQDAIIMG  850 (1211)
Q Consensus       782 ~~~g~~~~A~~~~~~~~~~----~~~--~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~--~~~~~~~l~~~  850 (1211)
                      ...|++++|...+++.+..    +..  + ....+..++..+...|++++|...+++.....  ..+  ....+..++..
T Consensus       542 ~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~  621 (903)
T PRK04841        542 FAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKI  621 (903)
T ss_pred             HHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHH
Confidence            6677777777776665542    111  0 12233445556666677777777776664321  111  12334445566


Q ss_pred             HHhhcchhhHHHHHHHHHHcCCC-CChh---HH--HHHHHHHHhcCChhhHHHHHHHHHHcCCCCc---hHHHHHHHHHH
Q 000951          851 LKRIAAFQESHFVLRGMAEKGLT-PKCT---QY--ITLINGMCRVGNFQGAFKLKDEMEALGISSS---DVAESAMVRGL  921 (1211)
Q Consensus       851 ~~~~g~~~eA~~~~~~~~~~g~~-p~~~---~~--~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~---~~~~~~l~~~~  921 (1211)
                      +...|++++|...+.++...... ....   ..  ......+...|+.+.|...+...........   ...+..++.++
T Consensus       622 ~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~  701 (903)
T PRK04841        622 SLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQ  701 (903)
T ss_pred             HHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHH
Confidence            66777777777777776541110 0000   00  0112334456777777777666542111111   11134566677


Q ss_pred             HhcCCHHHHHHHHHHHHhC----Cccc-CHHHHHHHHHHhhhhCCHHHHHHHHHHHHhc
Q 000951          922 AHCGKVEEAMLVLNRMLRM----RLVP-TIATFTTLIHKFCKEAKFVDALKLKGTMELS  975 (1211)
Q Consensus       922 ~~~g~~~eA~~~~~~~~~~----~~~p-~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~  975 (1211)
                      ...|++++|...++++++.    +..+ ...++..++.++...|+.++|...+......
T Consensus       702 ~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~l  760 (903)
T PRK04841        702 ILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKL  760 (903)
T ss_pred             HHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            7788888888888887763    1111 2346677788888888888888887766554

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=98.76  E-value=2.5e-07  Score=88.80  Aligned_cols=123  Identities=11%  Similarity=0.021  Sum_probs=92.6

Q ss_pred             HHHHHHHHCCCCCChhhHHHHHHHHHhhcchhhHHHHHHHHHHcCCCCC-hhHHHHHHHHHHhcCChhhHHHHHHHHHHc
Q 000951          827 DLFNIMNMLGVVPDTNTQDAIIMGLKRIAAFQESHFVLRGMAEKGLTPK-CTQYITLINGMCRVGNFQGAFKLKDEMEAL  905 (1211)
Q Consensus       827 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~  905 (1211)
                      .+|++.++.  .|+  .+..++..+.+.|++++|...|+.++.  .+|+ ...+..++.++...|++++|...|+++.+.
T Consensus        14 ~~~~~al~~--~p~--~~~~~g~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l   87 (144)
T PRK15359         14 DILKQLLSV--DPE--TVYASGYASWQEGDYSRAVIDFSWLVM--AQPWSWRAHIALAGTWMMLKEYTTAINFYGHALML   87 (144)
T ss_pred             HHHHHHHHc--CHH--HHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence            345555542  233  355667777788888888888888887  7775 477888888888888888888888888876


Q ss_pred             CCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCcccCHHHHHHHHHHhh
Q 000951          906 GISSSDVAESAMVRGLAHCGKVEEAMLVLNRMLRMRLVPTIATFTTLIHKFC  957 (1211)
Q Consensus       906 ~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~p~~~~~~~L~~~~~  957 (1211)
                      + +.+..++..++.++...|++++|+..|+++++..|. ++..|...+.++.
T Consensus        88 ~-p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~-~~~~~~~~~~~~~  137 (144)
T PRK15359         88 D-ASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYA-DASWSEIRQNAQI  137 (144)
T ss_pred             C-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHH
Confidence            3 667778888888888888888888888888887765 7777766666543

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=98.75  E-value=4.6e-07  Score=102.33  Aligned_cols=221  Identities=15%  Similarity=0.107  Sum_probs=140.3

Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHH
Q 000951          662 FSPNNVMFTCLVDGLFKAGQSKAAMHISKIMDKEGVYPDTIAFNAVMDGFSRMGNMMMANDLLSTMRSRKLCPSLATYNI  741 (1211)
Q Consensus       662 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~  741 (1211)
                      ++|--..-..+...+.+.|-..+|..+++..         ..|.-++..|...|+..+|..+..+-.++  +||+..|..
T Consensus       394 lpp~Wq~q~~laell~slGitksAl~I~Erl---------emw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~  462 (777)
T KOG1128|consen  394 LPPIWQLQRLLAELLLSLGITKSALVIFERL---------EMWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCL  462 (777)
T ss_pred             CCCcchHHHHHHHHHHHcchHHHHHHHHHhH---------HHHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHH
Confidence            3444444556667777777777777777655         36667777777777777777777776653  567777777


Q ss_pred             HHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCc
Q 000951          742 LLHGYSKKKDLLMCSMLLNTMKMEGLLPDKLTCHSLILGFCETGMLEVGFKFLKKMIAEGTMVDCFTFNVLMRKCCEAGE  821 (1211)
Q Consensus       742 l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~  821 (1211)
                      +++.....--+++|.++.+..-..       +-..+.......++++++.+.++..++.+ +.-..+|..++.+..++++
T Consensus       463 LGDv~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek  534 (777)
T KOG1128|consen  463 LGDVLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEK  534 (777)
T ss_pred             hhhhccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhh
Confidence            777766666667777666654331       11122222234677777777777776632 2235567777777777777


Q ss_pred             HHHHHHHHHHHHHCCCCCC-hhhHHHHHHHHHhhcchhhHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChhhHHHHHH
Q 000951          822 MGKAFDLFNIMNMLGVVPD-TNTQDAIIMGLKRIAAFQESHFVLRGMAEKGLTPKCTQYITLINGMCRVGNFQGAFKLKD  900 (1211)
Q Consensus       822 ~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~eA~~~~~  900 (1211)
                      +..|.+.|......  .|| ...||++..+|.+.|+..+|...++++++.... +...|.+-.....+.|.+++|++.+.
T Consensus       535 ~q~av~aF~rcvtL--~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~-~w~iWENymlvsvdvge~eda~~A~~  611 (777)
T KOG1128|consen  535 EQAAVKAFHRCVTL--EPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQ-HWQIWENYMLVSVDVGEFEDAIKAYH  611 (777)
T ss_pred             hHHHHHHHHHHhhc--CCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCC-CCeeeechhhhhhhcccHHHHHHHHH
Confidence            77777777776652  344 667777777777777777777777777764422 22334444445556777777777777


Q ss_pred             HHHH
Q 000951          901 EMEA  904 (1211)
Q Consensus       901 ~~~~  904 (1211)
                      ++..
T Consensus       612 rll~  615 (777)
T KOG1128|consen  612 RLLD  615 (777)
T ss_pred             HHHH
Confidence            7753

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=98.75  E-value=4.9e-07  Score=96.36  Aligned_cols=184  Identities=12%  Similarity=0.022  Sum_probs=113.3

Q ss_pred             CHhhHHHHHHHHHhcCcHHHHHHHHHHHHHCCCCC-C-hhhHHHHHHHHHhhcchhhHHHHHHHHHHcCCCCCh----hH
Q 000951          805 DCFTFNVLMRKCCEAGEMGKAFDLFNIMNMLGVVP-D-TNTQDAIIMGLKRIAAFQESHFVLRGMAEKGLTPKC----TQ  878 (1211)
Q Consensus       805 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~-~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~g~~p~~----~~  878 (1211)
                      ....+..++..+...|++++|...|+++....... . ...+..++.+|.+.|++++|+..|+++++  ..|+.    .+
T Consensus        32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~--~~p~~~~~~~a  109 (235)
T TIGR03302        32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIR--LHPNHPDADYA  109 (235)
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--HCcCCCchHHH
Confidence            35567777778888888888888888887643211 1 24667778888888888888888888887  55543    25


Q ss_pred             HHHHHHHHHhc--------CChhhHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCcccCHHHHH
Q 000951          879 YITLINGMCRV--------GNFQGAFKLKDEMEALGISSSDVAESAMVRGLAHCGKVEEAMLVLNRMLRMRLVPTIATFT  950 (1211)
Q Consensus       879 ~~~l~~~~~~~--------g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~p~~~~~~  950 (1211)
                      +..++.++...        |++++|.+.|+++.... +.+...+..+.....    ....              ......
T Consensus       110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~~~~----~~~~--------------~~~~~~  170 (235)
T TIGR03302       110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY-PNSEYAPDAKKRMDY----LRNR--------------LAGKEL  170 (235)
T ss_pred             HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC-CCChhHHHHHHHHHH----HHHH--------------HHHHHH
Confidence            66667766654        66777777777776542 222222211110000    0000              001123


Q ss_pred             HHHHHhhhhCCHHHHHHHHHHHHhc-CCCCc-hHHHHHHHHHHHhCCChhHHHHHHHHHHH
Q 000951          951 TLIHKFCKEAKFVDALKLKGTMELS-GVKLD-VVSYNVLISGLCANGDVMPAFELYEEMKH 1009 (1211)
Q Consensus       951 ~L~~~~~~~g~~~~A~~~~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 1009 (1211)
                      .++..+.+.|++++|+..++..... .-.|. ...+..++.+|...|++++|...++.+..
T Consensus       171 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~  231 (235)
T TIGR03302       171 YVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGA  231 (235)
T ss_pred             HHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            5666777788888888877765544 11222 23677778888888888888887776654

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=98.71  E-value=0.0019  Score=75.81  Aligned_cols=161  Identities=13%  Similarity=0.106  Sum_probs=88.8

Q ss_pred             HHHHHHHHHHhcCChH---HHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHHHHHCCCCCChhhHHHHHH
Q 000951          773 TCHSLILGFCETGMLE---VGFKFLKKMIAEGTMVDCFTFNVLMRKCCEAGEMGKAFDLFNIMNMLGVVPDTNTQDAIIM  849 (1211)
Q Consensus       773 ~~~~l~~~~~~~g~~~---~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~  849 (1211)
                      +.+.|+..+.+.++..   +|+.+++..+..+ +.|..+--.|+.+|+-.|-+..|.++|+.+--..+..|+..|. +..
T Consensus       438 av~~Lid~~rktnd~~~l~eaI~LLE~glt~s-~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK~IQ~DTlgh~-~~~  515 (932)
T KOG2053|consen  438 AVNHLIDLWRKTNDLTDLFEAITLLENGLTKS-PHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIKNIQTDTLGHL-IFR  515 (932)
T ss_pred             HHHHHHHHHHhcCcHHHHHHHHHHHHHHhhcC-CccHHHHHHHHHHHHHhcCChhHHHHHHhcchHHhhhccchHH-HHH
Confidence            3455667777777654   5666666666532 2345555667788888899999999998875444455554443 223


Q ss_pred             HHHhhcchhhHHHHHHHHHHcCCCCCh--hHHHHHHHHHHhcCChhhHHH---HHHHHHHcCCCCchHHHHHHHHHHHhc
Q 000951          850 GLKRIAAFQESHFVLRGMAEKGLTPKC--TQYITLINGMCRVGNFQGAFK---LKDEMEALGISSSDVAESAMVRGLAHC  924 (1211)
Q Consensus       850 ~~~~~g~~~eA~~~~~~~~~~g~~p~~--~~~~~l~~~~~~~g~~~eA~~---~~~~~~~~~~~~~~~~~~~l~~~~~~~  924 (1211)
                      .+...|++.-+...++..++  +--++  .+-..++-+| +.|.+.+-.+   .-+++..........+-+...+.+...
T Consensus       516 ~~~t~g~~~~~s~~~~~~lk--fy~~~~kE~~eyI~~AY-r~g~ySkI~em~~fr~rL~~S~q~~a~~VE~~~l~ll~~~  592 (932)
T KOG2053|consen  516 RAETSGRSSFASNTFNEHLK--FYDSSLKETPEYIALAY-RRGAYSKIPEMLAFRDRLMHSLQKWACRVENLQLSLLCNA  592 (932)
T ss_pred             HHHhcccchhHHHHHHHHHH--HHhhhhhhhHHHHHHHH-HcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            44556777777777777665  22211  2222233333 4455444333   333332110001111223445666777


Q ss_pred             CCHHHHHHHHHHHH
Q 000951          925 GKVEEAMLVLNRML  938 (1211)
Q Consensus       925 g~~~eA~~~~~~~~  938 (1211)
                      ++.++-...+..+.
T Consensus       593 ~~~~q~~~~~~~~~  606 (932)
T KOG2053|consen  593 DRGTQLLKLLESMK  606 (932)
T ss_pred             CcHHHHHHHHhccc
Confidence            77777666665544

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=98.70  E-value=7.7e-07  Score=90.44  Aligned_cols=118  Identities=12%  Similarity=0.115  Sum_probs=81.7

Q ss_pred             hcchhhHHHHHHHHHHcCCCCC-hhHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCchHHHHHHHHHH-HhcCC--HHH
Q 000951          854 IAAFQESHFVLRGMAEKGLTPK-CTQYITLINGMCRVGNFQGAFKLKDEMEALGISSSDVAESAMVRGL-AHCGK--VEE  929 (1211)
Q Consensus       854 ~g~~~eA~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~--~~e  929 (1211)
                      .++.++++..+++.++  .+|+ ...|..++..|...|++++|...|+++.+.. +.+..++..++.++ ...|+  .++
T Consensus        52 ~~~~~~~i~~l~~~L~--~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~  128 (198)
T PRK10370         52 QQTPEAQLQALQDKIR--ANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQ  128 (198)
T ss_pred             chhHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHH
Confidence            4556677777777776  6664 3667777777777777777777777777653 55666667777653 55565  477


Q ss_pred             HHHHHHHHHhCCcccCHHHHHHHHHHhhhhCCHHHHHHHHHHHHhc
Q 000951          930 AMLVLNRMLRMRLVPTIATFTTLIHKFCKEAKFVDALKLKGTMELS  975 (1211)
Q Consensus       930 A~~~~~~~~~~~~~p~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~  975 (1211)
                      |.++++++++.+|. +..++..|+..+.+.|++++|+..|+.+.+.
T Consensus       129 A~~~l~~al~~dP~-~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l  173 (198)
T PRK10370        129 TREMIDKALALDAN-EVTALMLLASDAFMQADYAQAIELWQKVLDL  173 (198)
T ss_pred             HHHHHHHHHHhCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            77777777777665 6777777777777777777777777766554

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=98.70  E-value=1.8e-06  Score=103.63  Aligned_cols=134  Identities=11%  Similarity=0.045  Sum_probs=74.9

Q ss_pred             CCCCHhhHHHHHHHHHhcCcHHHHHHHHHHHHHCCCCCC-hhhHHHHHHHHHhhcchhhHHHHHHHHHHcCCCCCh-hHH
Q 000951          802 TMVDCFTFNVLMRKCCEAGEMGKAFDLFNIMNMLGVVPD-TNTQDAIIMGLKRIAAFQESHFVLRGMAEKGLTPKC-TQY  879 (1211)
Q Consensus       802 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~g~~p~~-~~~  879 (1211)
                      ++.+...+..|+.+....|.+++|..+++.+.+.  .|| ...+..++.++.+.+++++|+..+++.++  ..|+. ...
T Consensus        82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~--~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~--~~p~~~~~~  157 (694)
T PRK15179         82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQR--FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS--GGSSSAREI  157 (694)
T ss_pred             ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh--cCCCCHHHH
Confidence            3344555555556666666666666666665542  333 34455555555566666666666666655  55543 445


Q ss_pred             HHHHHHHHhcCChhhHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 000951          880 ITLINGMCRVGNFQGAFKLKDEMEALGISSSDVAESAMVRGLAHCGKVEEAMLVLNRMLRM  940 (1211)
Q Consensus       880 ~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~  940 (1211)
                      ..++.++.+.|++++|..+|+++... .+.+..++..++..+...|+.++|...|+++++.
T Consensus       158 ~~~a~~l~~~g~~~~A~~~y~~~~~~-~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~  217 (694)
T PRK15179        158 LLEAKSWDEIGQSEQADACFERLSRQ-HPEFENGYVGWAQSLTRRGALWRARDVLQAGLDA  217 (694)
T ss_pred             HHHHHHHHHhcchHHHHHHHHHHHhc-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            55555555566666666666666542 2344555555555566666666666666665554

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=98.68  E-value=1e-06  Score=99.64  Aligned_cols=221  Identities=11%  Similarity=0.024  Sum_probs=181.1

Q ss_pred             CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHHHHHCCCCCChhhHHH
Q 000951          767 LLPDKLTCHSLILGFCETGMLEVGFKFLKKMIAEGTMVDCFTFNVLMRKCCEAGEMGKAFDLFNIMNMLGVVPDTNTQDA  846 (1211)
Q Consensus       767 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~  846 (1211)
                      ..|-...-..+...+...|-..+|+.++++..         .|..++.+|...|+..+|.++..+-++  -+||+..|..
T Consensus       394 lpp~Wq~q~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~  462 (777)
T KOG1128|consen  394 LPPIWQLQRLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCL  462 (777)
T ss_pred             CCCcchHHHHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHH
Confidence            34444444566788999999999999999864         588899999999999999998888876  3688999999


Q ss_pred             HHHHHHhhcchhhHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCC
Q 000951          847 IIMGLKRIAAFQESHFVLRGMAEKGLTPKCTQYITLINGMCRVGNFQGAFKLKDEMEALGISSSDVAESAMVRGLAHCGK  926 (1211)
Q Consensus       847 l~~~~~~~g~~~eA~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~  926 (1211)
                      ++++.....-+++|.++++..-.       .+-..++......++++++.+.++...+.+ +-...+|...+.+..+.++
T Consensus       463 LGDv~~d~s~yEkawElsn~~sa-------rA~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek  534 (777)
T KOG1128|consen  463 LGDVLHDPSLYEKAWELSNYISA-------RAQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEK  534 (777)
T ss_pred             hhhhccChHHHHHHHHHhhhhhH-------HHHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhh
Confidence            99999998889999999887543       123344455556899999999999998873 6678899999999999999


Q ss_pred             HHHHHHHHHHHHhCCcccCHHHHHHHHHHhhhhCCHHHHHHHHHHHHhcCCCCchH-HHHHHHHHHHhCCChhHHHHHHH
Q 000951          927 VEEAMLVLNRMLRMRLVPTIATFTTLIHKFCKEAKFVDALKLKGTMELSGVKLDVV-SYNVLISGLCANGDVMPAFELYE 1005 (1211)
Q Consensus       927 ~~eA~~~~~~~~~~~~~p~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~ 1005 (1211)
                      ++.|.+.|...+...|. +...|+++..+|.+.|+-.+|...++.....  +-++. .|.+-......-|.|++|++.++
T Consensus       535 ~q~av~aF~rcvtL~Pd-~~eaWnNls~ayi~~~~k~ra~~~l~EAlKc--n~~~w~iWENymlvsvdvge~eda~~A~~  611 (777)
T KOG1128|consen  535 EQAAVKAFHRCVTLEPD-NAEAWNNLSTAYIRLKKKKRAFRKLKEALKC--NYQHWQIWENYMLVSVDVGEFEDAIKAYH  611 (777)
T ss_pred             hHHHHHHHHHHhhcCCC-chhhhhhhhHHHHHHhhhHHHHHHHHHHhhc--CCCCCeeeechhhhhhhcccHHHHHHHHH
Confidence            99999999999998866 8899999999999999999999988766655  33334 56555555578899999999999


Q ss_pred             HHHH
Q 000951         1006 EMKH 1009 (1211)
Q Consensus      1006 ~~~~ 1009 (1211)
                      .+.+
T Consensus       612 rll~  615 (777)
T KOG1128|consen  612 RLLD  615 (777)
T ss_pred             HHHH
Confidence            8765

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=98.68  E-value=1.6e-06  Score=92.39  Aligned_cols=59  Identities=14%  Similarity=0.044  Sum_probs=45.1

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhCCcc-c-CHHHHHHHHHHhhhhCCHHHHHHHHHHHHh
Q 000951          916 AMVRGLAHCGKVEEAMLVLNRMLRMRLV-P-TIATFTTLIHKFCKEAKFVDALKLKGTMEL  974 (1211)
Q Consensus       916 ~l~~~~~~~g~~~eA~~~~~~~~~~~~~-p-~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~  974 (1211)
                      .++..+.+.|++++|+..++++++..|. | .+.+|..++.++...|++++|...++.+..
T Consensus       171 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~  231 (235)
T TIGR03302       171 YVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGA  231 (235)
T ss_pred             HHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            4667788888888888888888876542 2 457888888888888888888887776554

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=98.65  E-value=1.5e-06  Score=88.32  Aligned_cols=130  Identities=10%  Similarity=0.094  Sum_probs=109.1

Q ss_pred             cCChhhHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCcccCHHHHHHHHHHh-hhhCC--HHHH
Q 000951          889 VGNFQGAFKLKDEMEALGISSSDVAESAMVRGLAHCGKVEEAMLVLNRMLRMRLVPTIATFTTLIHKF-CKEAK--FVDA  965 (1211)
Q Consensus       889 ~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~p~~~~~~~L~~~~-~~~g~--~~~A  965 (1211)
                      .++.+++...+++.++.+ +.+...|..++..|...|++++|+..|+++++.+|. +...+..++.++ ...|+  .++|
T Consensus        52 ~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~-~~~~~~~lA~aL~~~~g~~~~~~A  129 (198)
T PRK10370         52 QQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGE-NAELYAALATVLYYQAGQHMTPQT  129 (198)
T ss_pred             chhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCCCCcHHH
Confidence            667788999999998773 888999999999999999999999999999999877 999999999975 67777  5999


Q ss_pred             HHHHHHHHhcCCCCchH-HHHHHHHHHHhCCChhHHHHHHHHHHHcCCccChhhHHHHHH
Q 000951          966 LKLKGTMELSGVKLDVV-SYNVLISGLCANGDVMPAFELYEEMKHKGLCPNSTTYSVLID 1024 (1211)
Q Consensus       966 ~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~l~~ 1024 (1211)
                      .++++.....  +|+.. ++..++.++...|++++|+..++++.+.  .|.......++.
T Consensus       130 ~~~l~~al~~--dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l--~~~~~~r~~~i~  185 (198)
T PRK10370        130 REMIDKALAL--DANEVTALMLLASDAFMQADYAQAIELWQKVLDL--NSPRVNRTQLVE  185 (198)
T ss_pred             HHHHHHHHHh--CCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCccHHHHHH
Confidence            9999877766  88554 8899999999999999999999999773  333334444443

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=98.65  E-value=1.4e-06  Score=91.75  Aligned_cols=186  Identities=10%  Similarity=-0.050  Sum_probs=130.4

Q ss_pred             hhHHHHH-HHHHhhcchhhHHHHHHHHHHcCCCCCh-hHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCc---------
Q 000951          842 NTQDAII-MGLKRIAAFQESHFVLRGMAEKGLTPKC-TQYITLINGMCRVGNFQGAFKLKDEMEALGISSS---------  910 (1211)
Q Consensus       842 ~~~~~l~-~~~~~~g~~~eA~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~---------  910 (1211)
                      .+|..+. .++...|++++|...--..++  +++.. .....-+.++.-.++.+.|...|++.+..+....         
T Consensus       169 ~~a~~lka~cl~~~~~~~~a~~ea~~ilk--ld~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~  246 (486)
T KOG0550|consen  169 FKAKLLKAECLAFLGDYDEAQSEAIDILK--LDATNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMP  246 (486)
T ss_pred             hHHHHhhhhhhhhcccchhHHHHHHHHHh--cccchhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhH
Confidence            4444443 345567777777777777666  55643 4444555566667777888888888775532111         


Q ss_pred             --hHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCcc---cCHHHHHHHHHHhhhhCCHHHHHHHHHHHHhcCCCCchH-HH
Q 000951          911 --DVAESAMVRGLAHCGKVEEAMLVLNRMLRMRLV---PTIATFTTLIHKFCKEAKFVDALKLKGTMELSGVKLDVV-SY  984 (1211)
Q Consensus       911 --~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~---p~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-~~  984 (1211)
                        ...+..-+.-..+.|++.+|.+.|..++..+|.   |++..|...+.+..+.|+.++|+.-.+....  ++|... .+
T Consensus       247 k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~--iD~syikal  324 (486)
T KOG0550|consen  247 KKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALK--IDSSYIKAL  324 (486)
T ss_pred             HHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhh--cCHHHHHHH
Confidence              112333366678899999999999999997754   3667888999999999999999998665443  366544 56


Q ss_pred             HHHHHHHHhCCChhHHHHHHHHHHHcCCccCh-hhHHHHHHHHHhccc
Q 000951          985 NVLISGLCANGDVMPAFELYEEMKHKGLCPNS-TTYSVLIDAISKKEN 1031 (1211)
Q Consensus       985 ~~l~~~~~~~g~~~~a~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~~~ 1031 (1211)
                      ..-+.++...++|++|.+-+++..+....+.+ ++|.+....+.+..+
T Consensus       325 l~ra~c~l~le~~e~AV~d~~~a~q~~~s~e~r~~l~~A~~aLkkSkR  372 (486)
T KOG0550|consen  325 LRRANCHLALEKWEEAVEDYEKAMQLEKDCEIRRTLREAQLALKKSKR  372 (486)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhhh
Confidence            66677888999999999999998775555666 787777666655444

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=98.65  E-value=4.6e-06  Score=100.26  Aligned_cols=143  Identities=9%  Similarity=0.053  Sum_probs=108.8

Q ss_pred             CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HhhHHHHHHHHHhcCcHHHHHHHHHHHHHCCCCCChhhHH
Q 000951          767 LLPDKLTCHSLILGFCETGMLEVGFKFLKKMIAEGTMVD-CFTFNVLMRKCCEAGEMGKAFDLFNIMNMLGVVPDTNTQD  845 (1211)
Q Consensus       767 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~  845 (1211)
                      ...+...+..|..+....|.+++|...++.+.+  +.|| ......++.++.+.+++++|+..++++...+ +.+.....
T Consensus        82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~--~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~-p~~~~~~~  158 (694)
T PRK15179         82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQ--RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGG-SSSAREIL  158 (694)
T ss_pred             ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHh--hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC-CCCHHHHH
Confidence            334566777777888888888888888888887  5565 4566677788888888888888888888643 23466777


Q ss_pred             HHHHHHHhhcchhhHHHHHHHHHHcCCCCC-hhHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCchHHHH
Q 000951          846 AIIMGLKRIAAFQESHFVLRGMAEKGLTPK-CTQYITLINGMCRVGNFQGAFKLKDEMEALGISSSDVAES  915 (1211)
Q Consensus       846 ~l~~~~~~~g~~~eA~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~  915 (1211)
                      .++.++.+.|++++|+.+|++++.  ..|+ ..++..++.++...|+.++|...|+++++. ..+....|+
T Consensus       159 ~~a~~l~~~g~~~~A~~~y~~~~~--~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~-~~~~~~~~~  226 (694)
T PRK15179        159 LEAKSWDEIGQSEQADACFERLSR--QHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDA-IGDGARKLT  226 (694)
T ss_pred             HHHHHHHHhcchHHHHHHHHHHHh--cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-hCcchHHHH
Confidence            788888888888888888888887  5665 477888888888888888888888888765 244444444

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=98.62  E-value=4.3e-06  Score=83.80  Aligned_cols=153  Identities=20%  Similarity=0.090  Sum_probs=76.8

Q ss_pred             HHHHHHHHhhcchhhHHHHHHHHHHcCCCCC-hhHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCchHHHHHHHHHHHh
Q 000951          845 DAIIMGLKRIAAFQESHFVLRGMAEKGLTPK-CTQYITLINGMCRVGNFQGAFKLKDEMEALGISSSDVAESAMVRGLAH  923 (1211)
Q Consensus       845 ~~l~~~~~~~g~~~eA~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~  923 (1211)
                      ..+...+...|+-+.+..+..+...  ..|. .......+....+.|++.+|...+.++... -++|...|+.++.+|.+
T Consensus        70 ~~~a~a~~~~G~a~~~l~~~~~~~~--~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l-~p~d~~~~~~lgaaldq  146 (257)
T COG5010          70 AKLATALYLRGDADSSLAVLQKSAI--AYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARL-APTDWEAWNLLGAALDQ  146 (257)
T ss_pred             HHHHHHHHhcccccchHHHHhhhhc--cCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhcc-CCCChhhhhHHHHHHHH
Confidence            3344444444555555444444332  2221 223333455555555555555555555544 25555555555555555


Q ss_pred             cCCHHHHHHHHHHHHhCCcccCHHHHHHHHHHhhhhCCHHHHHHHHHHHHhcCCCC-chHHHHHHHHHHHhCCChhHHHH
Q 000951          924 CGKVEEAMLVLNRMLRMRLVPTIATFTTLIHKFCKEAKFVDALKLKGTMELSGVKL-DVVSYNVLISGLCANGDVMPAFE 1002 (1211)
Q Consensus       924 ~g~~~eA~~~~~~~~~~~~~p~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~ 1002 (1211)
                      .|+.++|...|.++++..+. ++.+.++|+..|.-.|+++.|..++......  .+ |...-.+++-+....|+.++|..
T Consensus       147 ~Gr~~~Ar~ay~qAl~L~~~-~p~~~nNlgms~~L~gd~~~A~~lll~a~l~--~~ad~~v~~NLAl~~~~~g~~~~A~~  223 (257)
T COG5010         147 LGRFDEARRAYRQALELAPN-EPSIANNLGMSLLLRGDLEDAETLLLPAYLS--PAADSRVRQNLALVVGLQGDFREAED  223 (257)
T ss_pred             ccChhHHHHHHHHHHHhccC-CchhhhhHHHHHHHcCCHHHHHHHHHHHHhC--CCCchHHHHHHHHHHhhcCChHHHHh
Confidence            55555555555555555443 5555555555555555555555554443332  22 33344555555555555555554


Q ss_pred             H
Q 000951         1003 L 1003 (1211)
Q Consensus      1003 ~ 1003 (1211)
                      +
T Consensus       224 i  224 (257)
T COG5010         224 I  224 (257)
T ss_pred             h
Confidence            4

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.62  E-value=2.2e-06  Score=92.30  Aligned_cols=245  Identities=11%  Similarity=0.016  Sum_probs=101.4

Q ss_pred             HHccCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCcHH
Q 000951          746 YSKKKDLLMCSMLLNTMKMEGLLPD--KLTCHSLILGFCETGMLEVGFKFLKKMIAEGTMVDCFTFNVLMRKCCEAGEMG  823 (1211)
Q Consensus       746 ~~~~g~~~~A~~~~~~~~~~g~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~  823 (1211)
                      +.-.|+|..++.-++ ...  ..|+  ......+.+++...|+++..+.   ++... .+|.......+...+...++-+
T Consensus        11 ~fy~G~Y~~~i~e~~-~~~--~~~~~~~e~~~~~~Rs~iAlg~~~~vl~---ei~~~-~~~~l~av~~la~y~~~~~~~e   83 (290)
T PF04733_consen   11 QFYLGNYQQCINEAS-LKS--FSPENKLERDFYQYRSYIALGQYDSVLS---EIKKS-SSPELQAVRLLAEYLSSPSDKE   83 (290)
T ss_dssp             HHCTT-HHHHCHHHH-CHT--STCHHHHHHHHHHHHHHHHTT-HHHHHH---HS-TT-SSCCCHHHHHHHHHHCTSTTHH
T ss_pred             HHHhhhHHHHHHHhh-ccC--CCchhHHHHHHHHHHHHHHcCChhHHHH---HhccC-CChhHHHHHHHHHHHhCccchH
Confidence            344566666665544 221  2221  1222334456666666554332   22222 2344444433333332223333


Q ss_pred             HHHHHHHHHHHCCCCC-ChhhHHHHHHHHHhhcchhhHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChhhHHHHHHHH
Q 000951          824 KAFDLFNIMNMLGVVP-DTNTQDAIIMGLKRIAAFQESHFVLRGMAEKGLTPKCTQYITLINGMCRVGNFQGAFKLKDEM  902 (1211)
Q Consensus       824 ~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~eA~~~~~~~  902 (1211)
                      .++.-+++.......+ +.......+.++...|++++|+.++.+.      .+.+.....+.++.+.++++.|.+.++.|
T Consensus        84 ~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~  157 (290)
T PF04733_consen   84 SALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNM  157 (290)
T ss_dssp             CHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            4433333322211111 1222222233444556666665555432      12334444455555666666666666665


Q ss_pred             HHcCCCCchHHHH---HHHHHHHhcCCHHHHHHHHHHHHhCCcccCHHHHHHHHHHhhhhCCHHHHHHHHHHHHhcCCCC
Q 000951          903 EALGISSSDVAES---AMVRGLAHCGKVEEAMLVLNRMLRMRLVPTIATFTTLIHKFCKEAKFVDALKLKGTMELSGVKL  979 (1211)
Q Consensus       903 ~~~~~~~~~~~~~---~l~~~~~~~g~~~eA~~~~~~~~~~~~~p~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~p  979 (1211)
                      .+.  ..|.....   +.+..+...+++++|..+|+++.+. +.+++.+++.++.++...|+|++|.+++...  +..+|
T Consensus       158 ~~~--~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~a--l~~~~  232 (290)
T PF04733_consen  158 QQI--DEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEA--LEKDP  232 (290)
T ss_dssp             HCC--SCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHH--CCC-C
T ss_pred             Hhc--CCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHH--HHhcc
Confidence            532  22222111   1111122223456666666665443 2335555555666666666666666554432  22344


Q ss_pred             ch-HHHHHHHHHHHhCCCh-hHHHHHHHHHH
Q 000951          980 DV-VSYNVLISGLCANGDV-MPAFELYEEMK 1008 (1211)
Q Consensus       980 ~~-~~~~~l~~~~~~~g~~-~~a~~~~~~~~ 1008 (1211)
                      +. .+..+++.+....|+. +.+.+...+++
T Consensus       233 ~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~  263 (290)
T PF04733_consen  233 NDPDTLANLIVCSLHLGKPTEAAERYLSQLK  263 (290)
T ss_dssp             CHHHHHHHHHHHHHHTT-TCHHHHHHHHHCH
T ss_pred             CCHHHHHHHHHHHHHhCCChhHHHHHHHHHH
Confidence            32 2444455544455554 33444444443

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=98.62  E-value=7.6e-06  Score=89.07  Aligned_cols=163  Identities=15%  Similarity=0.121  Sum_probs=130.1

Q ss_pred             hhhHHHHHHHHHhhcchhhHHHHHHHHHHcCCCCCh-hHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCchHHHHHHHH
Q 000951          841 TNTQDAIIMGLKRIAAFQESHFVLRGMAEKGLTPKC-TQYITLINGMCRVGNFQGAFKLKDEMEALGISSSDVAESAMVR  919 (1211)
Q Consensus       841 ~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~  919 (1211)
                      ...+...+-.+...|++++|+..++..+.  ..|++ ......+..+...++.++|.+.+++++... |.....+..++.
T Consensus       306 ~aa~YG~A~~~~~~~~~d~A~~~l~~L~~--~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~-P~~~~l~~~~a~  382 (484)
T COG4783         306 LAAQYGRALQTYLAGQYDEALKLLQPLIA--AQPDNPYYLELAGDILLEANKAKEAIERLKKALALD-PNSPLLQLNLAQ  382 (484)
T ss_pred             hHHHHHHHHHHHHhcccchHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CCccHHHHHHHH
Confidence            34444555556677889999999999887  77876 445566788889999999999999998762 334667788899


Q ss_pred             HHHhcCCHHHHHHHHHHHHhCCcccCHHHHHHHHHHhhhhCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhCCChhH
Q 000951          920 GLAHCGKVEEAMLVLNRMLRMRLVPTIATFTTLIHKFCKEAKFVDALKLKGTMELSGVKLDVVSYNVLISGLCANGDVMP  999 (1211)
Q Consensus       920 ~~~~~g~~~eA~~~~~~~~~~~~~p~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~  999 (1211)
                      +|.+.|+..+|+..++..+..+|+ |+..|..|+.+|...|+..+|...+                  +..|+.+|+|++
T Consensus       383 all~~g~~~eai~~L~~~~~~~p~-dp~~w~~LAqay~~~g~~~~a~~A~------------------AE~~~~~G~~~~  443 (484)
T COG4783         383 ALLKGGKPQEAIRILNRYLFNDPE-DPNGWDLLAQAYAELGNRAEALLAR------------------AEGYALAGRLEQ  443 (484)
T ss_pred             HHHhcCChHHHHHHHHHHhhcCCC-CchHHHHHHHHHHHhCchHHHHHHH------------------HHHHHhCCCHHH
Confidence            999999999999999999988877 9999999999999999999887763                  345778899999


Q ss_pred             HHHHHHHHHHcCCccChhhHHHHHHHH
Q 000951         1000 AFELYEEMKHKGLCPNSTTYSVLIDAI 1026 (1211)
Q Consensus      1000 a~~~~~~~~~~g~~p~~~~~~~l~~~~ 1026 (1211)
                      |+......+++ ++++.-+|..+....
T Consensus       444 A~~~l~~A~~~-~~~~~~~~aR~dari  469 (484)
T COG4783         444 AIIFLMRASQQ-VKLGFPDWARADARI  469 (484)
T ss_pred             HHHHHHHHHHh-ccCCcHHHHHHHHHH
Confidence            99999888764 556666777665543

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=98.61  E-value=6.8e-06  Score=82.41  Aligned_cols=154  Identities=17%  Similarity=0.130  Sum_probs=90.7

Q ss_pred             HHHHHHHHhcCcHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhcchhhHHHHHHHHHHcCCCCC-hhHHHHHHHHHHh
Q 000951          810 NVLMRKCCEAGEMGKAFDLFNIMNMLGVVPDTNTQDAIIMGLKRIAAFQESHFVLRGMAEKGLTPK-CTQYITLINGMCR  888 (1211)
Q Consensus       810 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~g~~p~-~~~~~~l~~~~~~  888 (1211)
                      ..+...+...|+-+.+..+...... ....|......++....+.|++.+|+..++++..  ..|+ ...|+.++.+|.+
T Consensus        70 ~~~a~a~~~~G~a~~~l~~~~~~~~-~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~--l~p~d~~~~~~lgaaldq  146 (257)
T COG5010          70 AKLATALYLRGDADSSLAVLQKSAI-AYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAAR--LAPTDWEAWNLLGAALDQ  146 (257)
T ss_pred             HHHHHHHHhcccccchHHHHhhhhc-cCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhc--cCCCChhhhhHHHHHHHH
Confidence            3344444455555544444444322 1122333344455555555666666666666555  4443 3566666666666


Q ss_pred             cCChhhHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCcccCHHHHHHHHHHhhhhCCHHHHHHH
Q 000951          889 VGNFQGAFKLKDEMEALGISSSDVAESAMVRGLAHCGKVEEAMLVLNRMLRMRLVPTIATFTTLIHKFCKEAKFVDALKL  968 (1211)
Q Consensus       889 ~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~p~~~~~~~L~~~~~~~g~~~~A~~~  968 (1211)
                      .|+.++|..-|.++.+. .+.++.+.+.++..|.-.|+++.|..++..+...+.. |..+-.+|+.+....|++++|..+
T Consensus       147 ~Gr~~~Ar~ay~qAl~L-~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~a-d~~v~~NLAl~~~~~g~~~~A~~i  224 (257)
T COG5010         147 LGRFDEARRAYRQALEL-APNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAA-DSRVRQNLALVVGLQGDFREAEDI  224 (257)
T ss_pred             ccChhHHHHHHHHHHHh-ccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCC-chHHHHHHHHHHhhcCChHHHHhh
Confidence            66666666666666654 2445556666666677777777777777776665443 666777777777777777777776

>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]

Probab=98.58  E-value=0.0024  Score=70.45  Aligned_cols=82  Identities=17%  Similarity=0.191  Sum_probs=59.1

Q ss_pred             CCCCChHHHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHH
Q 000951          100 LCNSNPSVFDLLIRVYLREGMVEYALETFQLMGFRGFNPSVYTCNMMLSFMLKDRRVDSVWLLFDDMLDRKICPNVATFN  179 (1211)
Q Consensus       100 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~l~~~~~~~~a~~~~~~m~~~~~~~~~~~~~  179 (1211)
                      ..|.+.+.|..|++-+... ..+++..+++++... ++.+...|...+....+.++++.+..+|.+-+..  ..+...|.
T Consensus        15 ~nP~di~sw~~lire~qt~-~~~~~R~~YEq~~~~-FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvk--vLnlDLW~   90 (656)
T KOG1914|consen   15 ENPYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNV-FPSSPRAWKLYIERELASKDFESVEKLFSRCLVK--VLNLDLWK   90 (656)
T ss_pred             cCCccHHHHHHHHHHHccC-CHHHHHHHHHHHhcc-CCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--HhhHhHHH
Confidence            3466777888888876554 888888888887643 4556678888888888888888888888887654  24566666


Q ss_pred             HHHHHH
Q 000951          180 ILINVS  185 (1211)
Q Consensus       180 ~li~~~  185 (1211)
                      ..+..-
T Consensus        91 lYl~YV   96 (656)
T KOG1914|consen   91 LYLSYV   96 (656)
T ss_pred             HHHHHH
Confidence            666544

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=98.58  E-value=0.0042  Score=72.99  Aligned_cols=222  Identities=11%  Similarity=0.078  Sum_probs=133.2

Q ss_pred             hCCChHHHHHHHHHHHHcCCCCcchhhhhhccCCCCCCChHHHHHHHHH--HHHcCChhHHHHHHHHHhhCCCCCCHHHH
Q 000951           66 KTRMYEDAKLILRQLAQMGIGQNSVFGSLMNTYPLCNSNPSVFDLLIRV--YLREGMVEYALETFQLMGFRGFNPSVYTC  143 (1211)
Q Consensus        66 ~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~A~~~~~~~~~~g~~~~~~~~  143 (1211)
                      ..++|..|...+..+.++.              |.   .+  +..++.+  +.|.|+.++|..+++.....+.. |..|.
T Consensus        21 d~~qfkkal~~~~kllkk~--------------Pn---~~--~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tL   80 (932)
T KOG2053|consen   21 DSSQFKKALAKLGKLLKKH--------------PN---AL--YAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTL   80 (932)
T ss_pred             hhHHHHHHHHHHHHHHHHC--------------CC---cH--HHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHH
Confidence            5677888888777776543              21   12  2233333  45889999999888877655433 88999


Q ss_pred             HHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHHc
Q 000951          144 NMMLSFMLKDRRVDSVWLLFDDMLDRKICPNVATFNILINVSCVEGKLKKAGYLLRKMEESGYVPNIVTYNTLLNWYCKK  223 (1211)
Q Consensus       144 ~~ll~~l~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~  223 (1211)
                      ..+-.+|.+.++++.|..+|+.....  .|+......+..+|.|.+.+.+-.+.=-+|-+. +.-+...+-++++.+...
T Consensus        81 q~l~~~y~d~~~~d~~~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs  157 (932)
T KOG2053|consen   81 QFLQNVYRDLGKLDEAVHLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQS  157 (932)
T ss_pred             HHHHHHHHHHhhhhHHHHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHh
Confidence            99999999999999999999998754  577777788888888888876544433333332 223344545555555543


Q ss_pred             C-C---------hHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCChHHHHHHHH-HHHHCCCCCCHHHHHHHHHHHH
Q 000951          224 G-R---------YKAAFKLIDCMASKG-IEADVCTYNMFIDDLCRNNRSAKGYLLLK-NMRKRMITPNEVTYNTLINGFV  291 (1211)
Q Consensus       224 g-~---------~~~A~~~~~~m~~~g-~~~~~~~~~~li~~~~~~g~~~~A~~~~~-~m~~~~~~p~~~~~~~li~~~~  291 (1211)
                      - .         ..-|.+.++.+.+.+ ---+..-...-...+-..|++++|.+++. ...+.-..-+...-+.-+..+.
T Consensus       158 ~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk  237 (932)
T KOG2053|consen  158 IFSENELLDPILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLK  237 (932)
T ss_pred             ccCCcccccchhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHH
Confidence            2 1         123444555555443 11122222333344455666666666663 3333333334444445555566


Q ss_pred             HcCCHHHHHHHHHHHHhCC
Q 000951          292 KEGKIQVASRVFDEMSMLN  310 (1211)
Q Consensus       292 ~~g~~~~A~~~~~~m~~~g  310 (1211)
                      +.+++.+-.++-.++..+|
T Consensus       238 ~l~~w~~l~~l~~~Ll~k~  256 (932)
T KOG2053|consen  238 LLNRWQELFELSSRLLEKG  256 (932)
T ss_pred             HhcChHHHHHHHHHHHHhC
Confidence            6666666666665555554

>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]

Probab=98.58  E-value=0.002  Score=71.07  Aligned_cols=409  Identities=13%  Similarity=0.157  Sum_probs=194.1

Q ss_pred             CCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhHHHHH
Q 000951          137 NPSVYTCNMMLSFMLKDRRVDSVWLLFDDMLDRKICPNVATFNILINVSCVEGKLKKAGYLLRKMEESGYVPNIVTYNTL  216 (1211)
Q Consensus       137 ~~~~~~~~~ll~~l~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l  216 (1211)
                      +-|+.+|+.|++-+... .+++++..|+++... ++.....|...|..-.+..+++..+.+|.+-...  .-++-.|...
T Consensus        17 P~di~sw~~lire~qt~-~~~~~R~~YEq~~~~-FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvk--vLnlDLW~lY   92 (656)
T KOG1914|consen   17 PYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNV-FPSSPRAWKLYIERELASKDFESVEKLFSRCLVK--VLNLDLWKLY   92 (656)
T ss_pred             CccHHHHHHHHHHHccC-CHHHHHHHHHHHhcc-CCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--HhhHhHHHHH
Confidence            56788899999877554 889999999998764 6667788888999999999999999999888765  3456666666


Q ss_pred             HHHHHH-cCChHH----HHHHHHH-HHhCCCCCC-HHHHHHHHHHH---------HhcCChHHHHHHHHHHHHCCCCCCH
Q 000951          217 LNWYCK-KGRYKA----AFKLIDC-MASKGIEAD-VCTYNMFIDDL---------CRNNRSAKGYLLLKNMRKRMITPNE  280 (1211)
Q Consensus       217 i~~~~~-~g~~~~----A~~~~~~-m~~~g~~~~-~~~~~~li~~~---------~~~g~~~~A~~~~~~m~~~~~~p~~  280 (1211)
                      ++--.+ .|+...    ..+.|+- +.+.|..+- ...|+..+.-+         ..+.+++....++..+....+.-=.
T Consensus        93 l~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~nlE  172 (656)
T KOG1914|consen   93 LSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHNLE  172 (656)
T ss_pred             HHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccccHH
Confidence            543332 233222    2223332 333454332 23455554332         3333455566777777654332111


Q ss_pred             HHHHH------HHHHH-------HHcCCHHHHHHHHHHHHh--CCCCCChHH---------------HHHHHHHHHhcCC
Q 000951          281 VTYNT------LINGF-------VKEGKIQVASRVFDEMSM--LNFSPNSIT---------------YNELIDGHCCKGN  330 (1211)
Q Consensus       281 ~~~~~------li~~~-------~~~g~~~~A~~~~~~m~~--~g~~~~~~~---------------~~~li~~~~~~g~  330 (1211)
                      ..|+-      =|+..       -+...+-.|++++++...  +|+..+..+               |-.+|..=-.++-
T Consensus       173 kLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEksNpL  252 (656)
T KOG1914|consen  173 KLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEKSNPL  252 (656)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHhcCCc
Confidence            12211      11110       122345567777766532  243322222               4333332111110


Q ss_pred             H--------HHHHHHHHH-HHHCCCCcCHhH-HHHHH----HHHHhcCCh-------HHHHHHHHHHHHCCCCcCHHHHH
Q 000951          331 F--------KEAFRLLAM-MEEMGLRPNEVS-YGALL----NGFCKHAKF-------DLARSLLERMRTNGISISCIAYT  389 (1211)
Q Consensus       331 ~--------~~A~~~~~~-m~~~g~~p~~~t-~~~ll----~~~~~~g~~-------~~a~~l~~~~~~~~~~~~~~~~~  389 (1211)
                      -        ....-.+++ |.-.+..|+..- |...+    +.+...|+.       +++.++++..+..-...+..+|.
T Consensus       253 ~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~  332 (656)
T KOG1914|consen  253 RTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLYF  332 (656)
T ss_pred             ccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            0        001111111 111223333221 11111    112222332       22333333333222112222222


Q ss_pred             HHHHHHHHcC---CHHHHHHHHHHHHhCC-CCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHH
Q 000951          390 SVIDGLCKCG---LLDEAMQLFNKMFKDG-LNPDLITFSVLINGFCKVGMTRKAKAVLCKMYRDGLVP-NKIIYSTLIYY  464 (1211)
Q Consensus       390 ~li~~~~~~g---~~~~A~~~~~~m~~~g-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~li~~  464 (1211)
                      .+.+.--..-   +.+.....+++++..- ..| ..+|..+++.--+..-.+.|..+|.++.+.+..+ ++..+++++.-
T Consensus       333 ~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~-tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy  411 (656)
T KOG1914|consen  333 ALADYEESRYDDNKEKKVHEIYNKLLKIEDIDL-TLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEY  411 (656)
T ss_pred             HHHhhHHHhcccchhhhhHHHHHHHHhhhccCC-ceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHH
Confidence            2221111000   1333334444443321 122 2334455555555555666666666666655444 44455555544


Q ss_pred             HHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhcCCCCCH--HHHHHHHHHHHhcCCHH
Q 000951          465 FCKMGKVTEAMKVYAVMNRNAQGSDHFTCNMLVASLCKGGKVCEAEDYVGHMKRIGVVPNS--ITFDCMIDGYGTLGDGL  542 (1211)
Q Consensus       465 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~--~~~~~li~~~~~~g~~~  542 (1211)
                      +| .++.+-|.++|+.=++.-.. +.......++.+...++-..|..+|++....++.|+.  ..|..+|+-=..-|+..
T Consensus       412 ~c-skD~~~AfrIFeLGLkkf~d-~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~  489 (656)
T KOG1914|consen  412 YC-SKDKETAFRIFELGLKKFGD-SPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLN  489 (656)
T ss_pred             Hh-cCChhHHHHHHHHHHHhcCC-ChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHH
Confidence            43 34555666666554443222 3333344555555566666666666666655443333  35555555555556555


Q ss_pred             HHHHHHHHHH
Q 000951          543 KAFSMFDEMV  552 (1211)
Q Consensus       543 ~A~~~~~~m~  552 (1211)
                      .++++-+++.
T Consensus       490 si~~lekR~~  499 (656)
T KOG1914|consen  490 SILKLEKRRF  499 (656)
T ss_pred             HHHHHHHHHH
Confidence            5555555443

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=98.53  E-value=2.8e-05  Score=94.09  Aligned_cols=147  Identities=9%  Similarity=0.032  Sum_probs=80.0

Q ss_pred             CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 000951          700 DTIAFNAVMDGFSRMGNMMMANDLLSTMRSRKLCP-SLATYNILLHGYSKKKDLLMCSMLLNTMKMEGLLPDKLTCHSLI  778 (1211)
Q Consensus       700 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~  778 (1211)
                      +...+..|++.|...+++++|..+.+...+.  .| ....|..++..+.+.+++.++..+  .+.               
T Consensus        30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l---------------   90 (906)
T PRK14720         30 KFKELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYISGILSLSRRPLNDSNLL--NLI---------------   90 (906)
T ss_pred             hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHHHHHHHhhcchhhhhhh--hhh---------------
Confidence            3456666777777777777777777755542  44 344555555566666665544443  222               


Q ss_pred             HHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhcchh
Q 000951          779 LGFCETGMLEVGFKFLKKMIAEGTMVDCFTFNVLMRKCCEAGEMGKAFDLFNIMNMLGVVPDTNTQDAIIMGLKRIAAFQ  858 (1211)
Q Consensus       779 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~  858 (1211)
                      .......++.....+++.+..  ...+..++..|+.+|.+.|+.++|..+|+++++.. +.|+...|.++..|... +++
T Consensus        91 ~~~~~~~~~~~ve~~~~~i~~--~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~  166 (906)
T PRK14720         91 DSFSQNLKWAIVEHICDKILL--YGENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKE  166 (906)
T ss_pred             hhcccccchhHHHHHHHHHHh--hhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHH
Confidence            222222333222223333333  22233455566666666666666666666666544 33455666666666666 666


Q ss_pred             hHHHHHHHHHH
Q 000951          859 ESHFVLRGMAE  869 (1211)
Q Consensus       859 eA~~~~~~~~~  869 (1211)
                      +|+.++.+++.
T Consensus       167 KA~~m~~KAV~  177 (906)
T PRK14720        167 KAITYLKKAIY  177 (906)
T ss_pred             HHHHHHHHHHH
Confidence            66666666654

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.52  E-value=4.1e-05  Score=75.92  Aligned_cols=197  Identities=13%  Similarity=0.040  Sum_probs=128.9

Q ss_pred             CChHHHHHHHHHHHHC---C-CCCCHHH-HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCcHHH
Q 000951          750 KDLLMCSMLLNTMKME---G-LLPDKLT-CHSLILGFCETGMLEVGFKFLKKMIAEGTMVDCFTFNVLMRKCCEAGEMGK  824 (1211)
Q Consensus       750 g~~~~A~~~~~~~~~~---g-~~p~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~  824 (1211)
                      .+.++..+++.+++..   | ..|+..+ |-.+..+....|+.+.|..+++++... ++.+..+...-+-.+...|++++
T Consensus        26 rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~-fp~S~RV~~lkam~lEa~~~~~~  104 (289)
T KOG3060|consen   26 RNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDR-FPGSKRVGKLKAMLLEATGNYKE  104 (289)
T ss_pred             cCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh-CCCChhHHHHHHHHHHHhhchhh
Confidence            3455555555555431   2 4455443 334455666778888888888887765 33333333333334566788888


Q ss_pred             HHHHHHHHHHCCCCCChhhHHHHHHHHHhhcchhhHHHHHHHHHHcCCCC-ChhHHHHHHHHHHhcCChhhHHHHHHHHH
Q 000951          825 AFDLFNIMNMLGVVPDTNTQDAIIMGLKRIAAFQESHFVLRGMAEKGLTP-KCTQYITLINGMCRVGNFQGAFKLKDEME  903 (1211)
Q Consensus       825 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~eA~~~~~~~~  903 (1211)
                      |+++|+..++.+ +.|.+++---+.+....|+.-+|++-+.+.++  .-| |.++|..++..|...|++++|.-.+++++
T Consensus       105 A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~--~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~l  181 (289)
T KOG3060|consen  105 AIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLD--KFMNDQEAWHELAEIYLSEGDFEKAAFCLEELL  181 (289)
T ss_pred             HHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHH--HhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHH
Confidence            888888888755 44566666666677777877788888888776  444 56788888888888888888888888886


Q ss_pred             HcCCCCchHHHHHHHHHHHhcCC---HHHHHHHHHHHHhCCcccCHHHHHHH
Q 000951          904 ALGISSSDVAESAMVRGLAHCGK---VEEAMLVLNRMLRMRLVPTIATFTTL  952 (1211)
Q Consensus       904 ~~~~~~~~~~~~~l~~~~~~~g~---~~eA~~~~~~~~~~~~~p~~~~~~~L  952 (1211)
                      -. .|.++..+..+++.+.-.|-   ++-|.+.|.++++..+. +...|..+
T Consensus       182 l~-~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~-~~ral~GI  231 (289)
T KOG3060|consen  182 LI-QPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPK-NLRALFGI  231 (289)
T ss_pred             Hc-CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChH-hHHHHHHH
Confidence            54 24455556667776655443   66788888888887653 55454443

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=98.51  E-value=4.9e-05  Score=80.54  Aligned_cols=274  Identities=10%  Similarity=-0.037  Sum_probs=169.9

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCC-HHHHHHHHHHHHHcC
Q 000951          602 LAETCKSGNLWEAIVLLDEMVQFNLLPDRYTYTILLAGLCRKGKVVSALLFFEKVVSKRTFSPN-NVMFTCLVDGLFKAG  680 (1211)
Q Consensus       602 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g  680 (1211)
                      ...+.+..++.+|+..+...++..+ -+..-|..-...+...|++++|+--.++.++   +.|. ...+.....++...+
T Consensus        56 gn~~yk~k~Y~nal~~yt~Ai~~~p-d~a~yy~nRAa~~m~~~~~~~a~~dar~~~r---~kd~~~k~~~r~~~c~~a~~  131 (486)
T KOG0550|consen   56 GNAFYKQKTYGNALKNYTFAIDMCP-DNASYYSNRAATLMMLGRFEEALGDARQSVR---LKDGFSKGQLREGQCHLALS  131 (486)
T ss_pred             cchHHHHhhHHHHHHHHHHHHHhCc-cchhhhchhHHHHHHHHhHhhcccchhhhee---cCCCccccccchhhhhhhhH
Confidence            3445667778888888888887642 2334455566667777888888777766665   3332 233444444555555


Q ss_pred             CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCC-CCCHHHHHHHH-HHHHccCChHHHHHH
Q 000951          681 QSKAAMHISKIMDKEGVYPDTIAFNAVMDGFSRMGNMMMANDLLSTMRSRKL-CPSLATYNILL-HGYSKKKDLLMCSML  758 (1211)
Q Consensus       681 ~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~p~~~~~~~l~-~~~~~~g~~~~A~~~  758 (1211)
                      +..+|.+.++.-         ..+           ....|...++.+..... +|.-.+|..|- .++.-.|++++|.+.
T Consensus       132 ~~i~A~~~~~~~---------~~~-----------~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~e  191 (486)
T KOG0550|consen  132 DLIEAEEKLKSK---------QAY-----------KAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSE  191 (486)
T ss_pred             HHHHHHHHhhhh---------hhh-----------HHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHH
Confidence            555555444411         000           11112222222221111 23344454443 345567788888777


Q ss_pred             HHHHHHCCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH-------------hhHHHHHHHHHhcCcHHH
Q 000951          759 LNTMKMEGLLPDK-LTCHSLILGFCETGMLEVGFKFLKKMIAEGTMVDC-------------FTFNVLMRKCCEAGEMGK  824 (1211)
Q Consensus       759 ~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-------------~~~~~l~~~~~~~g~~~~  824 (1211)
                      --..++  +.+.. .....-..++...++.+.|...|++.++.  .|+.             ..+..-++...+.|++.+
T Consensus       192 a~~ilk--ld~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~l--dpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~  267 (486)
T KOG0550|consen  192 AIDILK--LDATNAEALYVRGLCLYYNDNADKAINHFQQALRL--DPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRK  267 (486)
T ss_pred             HHHHHh--cccchhHHHHhcccccccccchHHHHHHHhhhhcc--ChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhH
Confidence            766665  33322 22222335556677888888888888773  4442             222333456678899999


Q ss_pred             HHHHHHHHHHCC---CCCChhhHHHHHHHHHhhcchhhHHHHHHHHHHcCCCCCh-hHHHHHHHHHHhcCChhhHHHHHH
Q 000951          825 AFDLFNIMNMLG---VVPDTNTQDAIIMGLKRIAAFQESHFVLRGMAEKGLTPKC-TQYITLINGMCRVGNFQGAFKLKD  900 (1211)
Q Consensus       825 A~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~eA~~~~~  900 (1211)
                      |.+.|.+.+...   ..++.-.|...+.+..+.|+..+|+.-.+.+++  ++|.. ..|..-+.++...++|++|.+.|+
T Consensus       268 A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~--iD~syikall~ra~c~l~le~~e~AV~d~~  345 (486)
T KOG0550|consen  268 AYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALK--IDSSYIKALLRRANCHLALEKWEEAVEDYE  345 (486)
T ss_pred             HHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhh--cCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999888532   122355677888888899999999999999888  87764 778888888889999999999999


Q ss_pred             HHHHc
Q 000951          901 EMEAL  905 (1211)
Q Consensus       901 ~~~~~  905 (1211)
                      ++.+.
T Consensus       346 ~a~q~  350 (486)
T KOG0550|consen  346 KAMQL  350 (486)
T ss_pred             HHHhh
Confidence            99765

>PF12854 PPR_1: PPR repeat

Probab=98.51  E-value=1.4e-07  Score=63.88  Aligned_cols=32  Identities=50%  Similarity=0.844  Sum_probs=15.4

Q ss_pred             CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 000951          275 MITPNEVTYNTLINGFVKEGKIQVASRVFDEM  306 (1211)
Q Consensus       275 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m  306 (1211)
                      |+.||.+|||+||++||+.|++++|.++|++|
T Consensus         2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M   33 (34)
T PF12854_consen    2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM   33 (34)
T ss_pred             CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence            34444444444444444444444444444444

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=98.51  E-value=3e-05  Score=93.88  Aligned_cols=238  Identities=10%  Similarity=0.025  Sum_probs=168.4

Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHH
Q 000951          663 SPNNVMFTCLVDGLFKAGQSKAAMHISKIMDKEGVYPDT-IAFNAVMDGFSRMGNMMMANDLLSTMRSRKLCPSLATYNI  741 (1211)
Q Consensus       663 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~  741 (1211)
                      +.+...+..|+..+...+++++|.++.+...+.  .|+. ..|-.+...+.+.++++++..+  .               
T Consensus        28 p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~G~l~~q~~~~~~~~lv--~---------------   88 (906)
T PRK14720         28 LSKFKELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYISGILSLSRRPLNDSNLL--N---------------   88 (906)
T ss_pred             cchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHHHHHHHhhcchhhhhhh--h---------------
Confidence            334778999999999999999999999977765  4543 3444444467777776666555  3               


Q ss_pred             HHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCc
Q 000951          742 LLHGYSKKKDLLMCSMLLNTMKMEGLLPDKLTCHSLILGFCETGMLEVGFKFLKKMIAEGTMVDCFTFNVLMRKCCEAGE  821 (1211)
Q Consensus       742 l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~  821 (1211)
                      ++.......++.-...++..+.+.  .-+..++..++.+|.+.|+.++|..+|+++++.. +.|..+.|.++..|... +
T Consensus        89 ~l~~~~~~~~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-d  164 (906)
T PRK14720         89 LIDSFSQNLKWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-D  164 (906)
T ss_pred             hhhhcccccchhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-h
Confidence            333344444554444445555552  2345577889999999999999999999999965 44688999999999999 9


Q ss_pred             HHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhcchhhHHHHHHHHHHcCCCCChh-HHHHHHHHHHhcCChhhHHHHHH
Q 000951          822 MGKAFDLFNIMNMLGVVPDTNTQDAIIMGLKRIAAFQESHFVLRGMAEKGLTPKCT-QYITLINGMCRVGNFQGAFKLKD  900 (1211)
Q Consensus       822 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g~~~eA~~~~~  900 (1211)
                      +++|.+++.++.+.               |...+++.++.++..++..  ..|+.. .+..+.+                
T Consensus       165 L~KA~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~--~~~~d~d~f~~i~~----------------  211 (906)
T PRK14720        165 KEKAITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVH--YNSDDFDFFLRIER----------------  211 (906)
T ss_pred             HHHHHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHh--cCcccchHHHHHHH----------------
Confidence            99999999988752               5666789999999999988  667652 2332222                


Q ss_pred             HHHH-cCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCcccCHHHHHHHHHHhh
Q 000951          901 EMEA-LGISSSDVAESAMVRGLAHCGKVEEAMLVLNRMLRMRLVPTIATFTTLIHKFC  957 (1211)
Q Consensus       901 ~~~~-~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~p~~~~~~~L~~~~~  957 (1211)
                      ++.. .+...-...+.-+...|...+++++++.+++.+++.++. |..+...|+.+|.
T Consensus       212 ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~-n~~a~~~l~~~y~  268 (906)
T PRK14720        212 KVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNK-NNKAREELIRFYK  268 (906)
T ss_pred             HHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCc-chhhHHHHHHHHH
Confidence            2221 122223334445556677778888999999999888766 7777777877776

>PF12854 PPR_1: PPR repeat

Probab=98.50  E-value=1.4e-07  Score=63.80  Aligned_cols=32  Identities=56%  Similarity=1.004  Sum_probs=18.2

Q ss_pred             CCCCCHhHHHHHHHHHHHcCChHHHHHHHHHH
Q 000951          205 GYVPNIVTYNTLLNWYCKKGRYKAAFKLIDCM  236 (1211)
Q Consensus       205 g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m  236 (1211)
                      |+.||.+|||++|++||+.|++++|.++|++|
T Consensus         2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M   33 (34)
T PF12854_consen    2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM   33 (34)
T ss_pred             CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence            45555555555555555555555555555554

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=98.47  E-value=5.2e-05  Score=91.78  Aligned_cols=203  Identities=9%  Similarity=-0.044  Sum_probs=127.5

Q ss_pred             CHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCH-----HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhH
Q 000951          735 SLATYNILLHGYSKKKDLLMCSMLLNTMKMEGLLPDK-----LTCHSLILGFCETGMLEVGFKFLKKMIAEGTMVDCFTF  809 (1211)
Q Consensus       735 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~-----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~  809 (1211)
                      +...|...+.-..+.++.++|.+++++++.. +++..     -.|.+++..-..-|.-+...++|+++-+  +.....+|
T Consensus      1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~t-IN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcq--ycd~~~V~ 1533 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKT-INFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQ--YCDAYTVH 1533 (1710)
T ss_pred             cchHHHHHHHHHhhhhhhHHHHHHHHHHhhh-CCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHH--hcchHHHH
Confidence            5666777777777777777777777777654 43322     2455555544445666666777777766  33334566


Q ss_pred             HHHHHHHHhcCcHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhcchhhHHHHHHHHHHcCCCCC--h-hHHHHHHHHH
Q 000951          810 NVLMRKCCEAGEMGKAFDLFNIMNMLGVVPDTNTQDAIIMGLKRIAAFQESHFVLRGMAEKGLTPK--C-TQYITLINGM  886 (1211)
Q Consensus       810 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~g~~p~--~-~~~~~l~~~~  886 (1211)
                      ..|...|.+.+.+++|.++++.|.+. +......|...+..+.++.+-++|..++.++++  .-|.  + ......+..-
T Consensus      1534 ~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~--~lPk~eHv~~IskfAqLE 1610 (1710)
T KOG1070|consen 1534 LKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALK--SLPKQEHVEFISKFAQLE 1610 (1710)
T ss_pred             HHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHh--hcchhhhHHHHHHHHHHH
Confidence            67777777777777777777777653 224456677777777777777777777777776  5554  2 3334445555


Q ss_pred             HhcCChhhHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCccc
Q 000951          887 CRVGNFQGAFKLKDEMEALGISSSDVAESAMVRGLAHCGKVEEAMLVLNRMLRMRLVP  944 (1211)
Q Consensus       887 ~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~p  944 (1211)
                      .+.|+.+.+..+|+-.+.. .|.....|+..++.-.++|..+.+.++|++++..+..|
T Consensus      1611 Fk~GDaeRGRtlfEgll~a-yPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~ 1667 (1710)
T KOG1070|consen 1611 FKYGDAERGRTLFEGLLSA-YPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSI 1667 (1710)
T ss_pred             hhcCCchhhHHHHHHHHhh-CccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCh
Confidence            6666666666666666543 24455566666666666666666666666666666554

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=98.43  E-value=5e-06  Score=79.70  Aligned_cols=108  Identities=14%  Similarity=0.039  Sum_probs=61.8

Q ss_pred             HHHHHHcCCCCCh-hHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCc
Q 000951          864 LRGMAEKGLTPKC-TQYITLINGMCRVGNFQGAFKLKDEMEALGISSSDVAESAMVRGLAHCGKVEEAMLVLNRMLRMRL  942 (1211)
Q Consensus       864 ~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~  942 (1211)
                      |++++.  ..|+. .....++..+...|++++|...|+.+.+.+ +.+...+..++..+...|++++|...++++++.++
T Consensus         6 ~~~~l~--~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p   82 (135)
T TIGR02552         6 LKDLLG--LDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDP   82 (135)
T ss_pred             HHHHHc--CChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            444444  44533 445555556666666666666666665542 44555556666666666666666666666665554


Q ss_pred             ccCHHHHHHHHHHhhhhCCHHHHHHHHHHHHhc
Q 000951          943 VPTIATFTTLIHKFCKEAKFVDALKLKGTMELS  975 (1211)
Q Consensus       943 ~p~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~  975 (1211)
                      . +...+..++.++...|++++|+..|+.....
T Consensus        83 ~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  114 (135)
T TIGR02552        83 D-DPRPYFHAAECLLALGEPESALKALDLAIEI  114 (135)
T ss_pred             C-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            3 5555666666666666666666665544443

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=98.39  E-value=1.3e-06  Score=91.50  Aligned_cols=286  Identities=14%  Similarity=0.064  Sum_probs=164.1

Q ss_pred             HHHHhcCChHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHccCChHHHHHHHHH--HHHC--CCCC-CHHHHHHHHHH
Q 000951          709 DGFSRMGNMMMANDLLSTMRSRKLCP---SLATYNILLHGYSKKKDLLMCSMLLNT--MKME--GLLP-DKLTCHSLILG  780 (1211)
Q Consensus       709 ~~~~~~g~~~~A~~~~~~~~~~~~~p---~~~~~~~l~~~~~~~g~~~~A~~~~~~--~~~~--g~~p-~~~~~~~l~~~  780 (1211)
                      .-+++.|+......+|+..++.|...   =...|..|+++|.-.++|++|+++...  .++.  |-+- ...+...|+..
T Consensus        25 ERLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNt  104 (639)
T KOG1130|consen   25 ERLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNT  104 (639)
T ss_pred             HHHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccch
Confidence            34677777777777777777665432   134566666677777777777765432  1111  1111 11223345555


Q ss_pred             HHhcCChHHHHHHHHHHHHc----CCC-CCHhhHHHHHHHHHhcCcHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhc
Q 000951          781 FCETGMLEVGFKFLKKMIAE----GTM-VDCFTFNVLMRKCCEAGEMGKAFDLFNIMNMLGVVPDTNTQDAIIMGLKRIA  855 (1211)
Q Consensus       781 ~~~~g~~~~A~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  855 (1211)
                      +--.|.+++|+....+-+.-    |-. .....+..|+..|...|+.-....    ..+.|-.++.++           .
T Consensus       105 lKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~----pee~g~f~~ev~-----------~  169 (639)
T KOG1130|consen  105 LKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEA----PEEKGAFNAEVT-----------S  169 (639)
T ss_pred             hhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCC----hhhcccccHHHH-----------H
Confidence            55556666666655443321    110 112344444555544443110000    000000011000           1


Q ss_pred             chhhHHHHHHHHHHc----CCCC-ChhHHHHHHHHHHhcCChhhHHHHHHHHH----HcCCC-CchHHHHHHHHHHHhcC
Q 000951          856 AFQESHFVLRGMAEK----GLTP-KCTQYITLINGMCRVGNFQGAFKLKDEME----ALGIS-SSDVAESAMVRGLAHCG  925 (1211)
Q Consensus       856 ~~~eA~~~~~~~~~~----g~~p-~~~~~~~l~~~~~~~g~~~eA~~~~~~~~----~~~~~-~~~~~~~~l~~~~~~~g  925 (1211)
                      .++.|.+.|.+-++.    |-.. --.+|-.|++.|.-.|+++.|+...+.=+    +.|-. ....++..++.++.-.|
T Consensus       170 al~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg  249 (639)
T KOG1130|consen  170 ALENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLG  249 (639)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhc
Confidence            233445555554431    1111 12568888889999999999998876643    22211 12336778899999999


Q ss_pred             CHHHHHHHHHHHHhCCccc-----CHHHHHHHHHHhhhhCCHHHHHHHHHHH----HhcCCCC-chHHHHHHHHHHHhCC
Q 000951          926 KVEEAMLVLNRMLRMRLVP-----TIATFTTLIHKFCKEAKFVDALKLKGTM----ELSGVKL-DVVSYNVLISGLCANG  995 (1211)
Q Consensus       926 ~~~eA~~~~~~~~~~~~~p-----~~~~~~~L~~~~~~~g~~~~A~~~~~~~----~~~~~~p-~~~~~~~l~~~~~~~g  995 (1211)
                      +++.|.+.|+..+.+-++.     .+....+|++.|.-..+++.|+.++..-    ++++-.. ...+++.|+.+|...|
T Consensus       250 ~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg  329 (639)
T KOG1130|consen  250 NFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALG  329 (639)
T ss_pred             ccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhh
Confidence            9999999988876532221     3466788999999999999999986632    2332222 3458899999999999


Q ss_pred             ChhHHHHHHHHHHH
Q 000951          996 DVMPAFELYEEMKH 1009 (1211)
Q Consensus       996 ~~~~a~~~~~~~~~ 1009 (1211)
                      ..+.|....++-++
T Consensus       330 ~h~kAl~fae~hl~  343 (639)
T KOG1130|consen  330 EHRKALYFAELHLR  343 (639)
T ss_pred             hHHHHHHHHHHHHH
Confidence            99999988776544

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.36  E-value=0.00015  Score=72.75  Aligned_cols=111  Identities=16%  Similarity=0.141  Sum_probs=64.3

Q ss_pred             HhhcchhhHHHHHHHHHHcCCCCChhHHHHHHHHHH----hcCChhhHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCH
Q 000951          852 KRIAAFQESHFVLRGMAEKGLTPKCTQYITLINGMC----RVGNFQGAFKLKDEMEALGISSSDVAESAMVRGLAHCGKV  927 (1211)
Q Consensus       852 ~~~g~~~eA~~~~~~~~~~g~~p~~~~~~~l~~~~~----~~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~  927 (1211)
                      .+..+.+-|...+++|.+  ++ +..+...|+.+|.    ..+.+.+|.-+|+++.++ .+|+....+.++.+....|++
T Consensus       148 lk~~r~d~A~~~lk~mq~--id-ed~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~  223 (299)
T KOG3081|consen  148 LKMHRFDLAEKELKKMQQ--ID-EDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRY  223 (299)
T ss_pred             HHHHHHHHHHHHHHHHHc--cc-hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCH
Confidence            344445555555555544  22 2233444444443    223566777777777654 466666666666677777777


Q ss_pred             HHHHHHHHHHHhCCcccCHHHHHHHHHHhhhhCCHHHHHH
Q 000951          928 EEAMLVLNRMLRMRLVPTIATFTTLIHKFCKEAKFVDALK  967 (1211)
Q Consensus       928 ~eA~~~~~~~~~~~~~p~~~~~~~L~~~~~~~g~~~~A~~  967 (1211)
                      ++|..+++.++..+++ ++.++.+++-.--..|.-.++..
T Consensus       224 eeAe~lL~eaL~kd~~-dpetL~Nliv~a~~~Gkd~~~~~  262 (299)
T KOG3081|consen  224 EEAESLLEEALDKDAK-DPETLANLIVLALHLGKDAEVTE  262 (299)
T ss_pred             HHHHHHHHHHHhccCC-CHHHHHHHHHHHHHhCCChHHHH
Confidence            7777777777776655 66666666655555566555533

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=98.35  E-value=1e-05  Score=75.80  Aligned_cols=98  Identities=10%  Similarity=-0.016  Sum_probs=79.0

Q ss_pred             CchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCcccCHHHHHHHHHHhhhhCCHHHHHHHHHHHHhcCCCCch-HHHHHH
Q 000951          909 SSDVAESAMVRGLAHCGKVEEAMLVLNRMLRMRLVPTIATFTTLIHKFCKEAKFVDALKLKGTMELSGVKLDV-VSYNVL  987 (1211)
Q Consensus       909 ~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~p~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l  987 (1211)
                      .+....+.++..+...|++++|..+|+-+...+|. +...|..||.++...|++++|+..|.....+  .||. ..+.++
T Consensus        33 ~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~-~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L--~~ddp~~~~~a  109 (157)
T PRK15363         33 QPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAW-SFDYWFRLGECCQAQKHWGEAIYAYGRAAQI--KIDAPQAPWAA  109 (157)
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--CCCCchHHHHH
Confidence            34455667777888888888888888888887766 8888888888888889999998888766655  6744 488888


Q ss_pred             HHHHHhCCChhHHHHHHHHHHH
Q 000951          988 ISGLCANGDVMPAFELYEEMKH 1009 (1211)
Q Consensus       988 ~~~~~~~g~~~~a~~~~~~~~~ 1009 (1211)
                      +.+|...|+.+.|.+.|+....
T Consensus       110 g~c~L~lG~~~~A~~aF~~Ai~  131 (157)
T PRK15363        110 AECYLACDNVCYAIKALKAVVR  131 (157)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHH
Confidence            8888888998888888888766

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=98.34  E-value=4.7e-06  Score=87.38  Aligned_cols=262  Identities=12%  Similarity=0.045  Sum_probs=129.7

Q ss_pred             HHhCCChHHHHHHHHHHHHcCCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHH--Hh--CCCC-CCHHHHHHHHHH
Q 000951          640 LCRKGKVVSALLFFEKVVSKRTFSPN----NVMFTCLVDGLFKAGQSKAAMHISKIM--DK--EGVY-PDTIAFNAVMDG  710 (1211)
Q Consensus       640 ~~~~g~~~~A~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~--~g~~-~~~~~~~~li~~  710 (1211)
                      +|+.|+....+.+|+.+++.|  ..|    ...|..|..+|+..+++++|++++..=  +.  .|-+ ........|...
T Consensus        27 Lck~gdcraGv~ff~aA~qvG--TeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNt  104 (639)
T KOG1130|consen   27 LCKMGDCRAGVDFFKAALQVG--TEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNT  104 (639)
T ss_pred             HHhccchhhhHHHHHHHHHhc--chHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccch
Confidence            566666666777777666655  222    345666667777777777777665421  11  0100 011122223334


Q ss_pred             HHhcCChHHHHHHHHHHH----HCCCCC-CHHHHHHHHHHHHccCC--------------------hHHHHHHHHHHHHC
Q 000951          711 FSRMGNMMMANDLLSTMR----SRKLCP-SLATYNILLHGYSKKKD--------------------LLMCSMLLNTMKME  765 (1211)
Q Consensus       711 ~~~~g~~~~A~~~~~~~~----~~~~~p-~~~~~~~l~~~~~~~g~--------------------~~~A~~~~~~~~~~  765 (1211)
                      +--.|.+++|.....+-.    +.|-.- ....+..|+..|...|+                    ++.|.++|.+=++.
T Consensus       105 lKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l  184 (639)
T KOG1130|consen  105 LKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLEL  184 (639)
T ss_pred             hhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHH
Confidence            444566666654432221    111111 23456667777765543                    23334444332211


Q ss_pred             CCC-CCH----HHHHHHHHHHHhcCChHHHHHHHHHHHHc----CCC-CCHhhHHHHHHHHHhcCcHHHHHHHHHHHHH-
Q 000951          766 GLL-PDK----LTCHSLILGFCETGMLEVGFKFLKKMIAE----GTM-VDCFTFNVLMRKCCEAGEMGKAFDLFNIMNM-  834 (1211)
Q Consensus       766 g~~-p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-  834 (1211)
                      .-. -|.    ..|-.|+..|.-.|+++.|+..++.-+..    |-. .....+..|++++.-.|+++.|.+.|+.... 
T Consensus       185 ~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~L  264 (639)
T KOG1130|consen  185 SEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNL  264 (639)
T ss_pred             HHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHH
Confidence            000 011    24555666666677777777766654331    111 1134566666777777777777777765432 


Q ss_pred             ---CCCC-CChhhHHHHHHHHHhhcchhhHHHHHHHHHHc--CC---CCChhHHHHHHHHHHhcCChhhHHHHHHHHH
Q 000951          835 ---LGVV-PDTNTQDAIIMGLKRIAAFQESHFVLRGMAEK--GL---TPKCTQYITLINGMCRVGNFQGAFKLKDEME  903 (1211)
Q Consensus       835 ---~~~~-~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~--g~---~p~~~~~~~l~~~~~~~g~~~eA~~~~~~~~  903 (1211)
                         .|-. ...-+..+|++.|.-...+++|+.++.+-+..  .+   .....++.+|++++...|..++|+.+.+..+
T Consensus       265 Aielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl  342 (639)
T KOG1130|consen  265 AIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHL  342 (639)
T ss_pred             HHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence               1100 01234455666666666666666666554420  01   1122455566666666666666666555554

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=98.30  E-value=1.5e-05  Score=76.32  Aligned_cols=116  Identities=14%  Similarity=0.100  Sum_probs=95.9

Q ss_pred             HHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCcccCHHHHHHHHHHhhhhCCHHHHHHHHHHHHhcC
Q 000951          897 KLKDEMEALGISSSDVAESAMVRGLAHCGKVEEAMLVLNRMLRMRLVPTIATFTTLIHKFCKEAKFVDALKLKGTMELSG  976 (1211)
Q Consensus       897 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~p~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~  976 (1211)
                      +.|+++++.. +.+......++..+...|++++|...++++++.++. +...|..++.++...|++++|...++..... 
T Consensus         4 ~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-   80 (135)
T TIGR02552         4 ATLKDLLGLD-SEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPY-NSRYWLGLAACCQMLKEYEEAIDAYALAAAL-   80 (135)
T ss_pred             hhHHHHHcCC-hhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-
Confidence            3566666542 445567788899999999999999999999998765 8899999999999999999999998876655 


Q ss_pred             CCCc-hHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCccChhh
Q 000951          977 VKLD-VVSYNVLISGLCANGDVMPAFELYEEMKHKGLCPNSTT 1018 (1211)
Q Consensus       977 ~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~ 1018 (1211)
                       .|+ ...++.++.+|...|++++|...++...+  +.|+...
T Consensus        81 -~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~p~~~~  120 (135)
T TIGR02552        81 -DPDDPRPYFHAAECLLALGEPESALKALDLAIE--ICGENPE  120 (135)
T ss_pred             -CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hccccch
Confidence             675 45888999999999999999999998876  4455533

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=98.30  E-value=0.00022  Score=86.59  Aligned_cols=202  Identities=14%  Similarity=-0.007  Sum_probs=93.4

Q ss_pred             hhHHHHHHHHHhcCcHHHHHHHHHHHHHCCCCC-----ChhhHHHHHHHHHhhcchhhHHHHHHHHHHcCCCCChhHHHH
Q 000951          807 FTFNVLMRKCCEAGEMGKAFDLFNIMNMLGVVP-----DTNTQDAIIMGLKRIAAFQESHFVLRGMAEKGLTPKCTQYIT  881 (1211)
Q Consensus       807 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~g~~p~~~~~~~  881 (1211)
                      ..|...+.-....++.++|++++++++.. +.+     ....|.++.+.-...|.-+...++|+++-+  ..-....|..
T Consensus      1459 i~WI~YMaf~LelsEiekAR~iaerAL~t-IN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcq--ycd~~~V~~~ 1535 (1710)
T KOG1070|consen 1459 ILWIRYMAFHLELSEIEKARKIAERALKT-INFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQ--YCDAYTVHLK 1535 (1710)
T ss_pred             hHHHHHHHHHhhhhhhHHHHHHHHHHhhh-CCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHH--hcchHHHHHH
Confidence            34444444444445555555555544421 111     022333333333333444444444555444  2212234455


Q ss_pred             HHHHHHhcCChhhHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCccc-CHHHHHHHHHHhhhhC
Q 000951          882 LINGMCRVGNFQGAFKLKDEMEALGISSSDVAESAMVRGLAHCGKVEEAMLVLNRMLRMRLVP-TIATFTTLIHKFCKEA  960 (1211)
Q Consensus       882 l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~p-~~~~~~~L~~~~~~~g  960 (1211)
                      |...|.+.+.+++|.++|+.|.+. +.....+|...++.+.++.+-+.|..+++++++.-|.- ........+..-.+.|
T Consensus      1536 L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~G 1614 (1710)
T KOG1070|consen 1536 LLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYG 1614 (1710)
T ss_pred             HHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcC
Confidence            555555555555555555555433 23444455555555555555555555555555432221 2233344444455555


Q ss_pred             CHHHHHHHHHHHHhcCCCC-chHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCcc
Q 000951          961 KFVDALKLKGTMELSGVKL-DVVSYNVLISGLCANGDVMPAFELYEEMKHKGLCP 1014 (1211)
Q Consensus       961 ~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~p 1014 (1211)
                      +.+.+..+|+.....  .| -...|+..+..-.+.|+.+.+..+|+.....++.|
T Consensus      1615 DaeRGRtlfEgll~a--yPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~ 1667 (1710)
T KOG1070|consen 1615 DAERGRTLFEGLLSA--YPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSI 1667 (1710)
T ss_pred             CchhhHHHHHHHHhh--CccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCh
Confidence            555555555544333  33 23345555555555555555555555555544444

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.30  E-value=7.7e-06  Score=83.62  Aligned_cols=132  Identities=18%  Similarity=0.081  Sum_probs=90.8

Q ss_pred             HHHHHhhcchhhHHHHHHHHHHcCCCCCh-hHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCC
Q 000951          848 IMGLKRIAAFQESHFVLRGMAEKGLTPKC-TQYITLINGMCRVGNFQGAFKLKDEMEALGISSSDVAESAMVRGLAHCGK  926 (1211)
Q Consensus       848 ~~~~~~~g~~~eA~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~  926 (1211)
                      ++-..+.++|.+|+..|.++++  ++|.. +.|..-+.+|++.|.++.|++-.+.++..+ +....+|..|+.+|...|+
T Consensus        88 GN~~m~~~~Y~eAv~kY~~AI~--l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iD-p~yskay~RLG~A~~~~gk  164 (304)
T KOG0553|consen   88 GNKLMKNKDYQEAVDKYTEAIE--LDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSID-PHYSKAYGRLGLAYLALGK  164 (304)
T ss_pred             HHHHHHhhhHHHHHHHHHHHHh--cCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcC-hHHHHHHHHHHHHHHccCc
Confidence            3445567788888888888888  78754 667777888888888888888888887663 4455678888888888888


Q ss_pred             HHHHHHHHHHHHhCCcccCHHHHHHHHHHhhhhCCHH---HHHHHHHHHHhcCCCCchHH
Q 000951          927 VEEAMLVLNRMLRMRLVPTIATFTTLIHKFCKEAKFV---DALKLKGTMELSGVKLDVVS  983 (1211)
Q Consensus       927 ~~eA~~~~~~~~~~~~~p~~~~~~~L~~~~~~~g~~~---~A~~~~~~~~~~~~~p~~~~  983 (1211)
                      +++|++.|+++++.+|. +...+..|-.+--+.+...   .+...++.....+..||...
T Consensus       165 ~~~A~~aykKaLeldP~-Ne~~K~nL~~Ae~~l~e~~~~~~~~~~~d~~~~ig~~Pd~~s  223 (304)
T KOG0553|consen  165 YEEAIEAYKKALELDPD-NESYKSNLKIAEQKLNEPKSSAQASGSFDMAGLIGAFPDSRS  223 (304)
T ss_pred             HHHHHHHHHhhhccCCC-cHHHHHHHHHHHHHhcCCCcccccccchhhhhhccCCccchh
Confidence            88888888888887755 6666666666555444443   33333443344444465443

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.27  E-value=0.00042  Score=69.61  Aligned_cols=253  Identities=15%  Similarity=0.022  Sum_probs=151.7

Q ss_pred             HHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhcchhhH
Q 000951          781 FCETGMLEVGFKFLKKMIAEGTMVDCFTFNVLMRKCCEAGEMGKAFDLFNIMNMLGVVPDTNTQDAIIMGLKRIAAFQES  860 (1211)
Q Consensus       781 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA  860 (1211)
                      +.-.|.|..++..-......  +.+...-..+-++|...|++...+.-.+..    -.|.......+.......++.++-
T Consensus        18 ~fY~Gnyq~~ine~~~~~~~--~~~~e~d~y~~raylAlg~~~~~~~eI~~~----~~~~lqAvr~~a~~~~~e~~~~~~   91 (299)
T KOG3081|consen   18 YFYLGNYQQCINEAEKFSSS--KTDVELDVYMYRAYLALGQYQIVISEIKEG----KATPLQAVRLLAEYLELESNKKSI   91 (299)
T ss_pred             HHHhhHHHHHHHHHHhhccc--cchhHHHHHHHHHHHHcccccccccccccc----cCChHHHHHHHHHHhhCcchhHHH
Confidence            33445555555444443322  122223333344555555544333221111    122222333333333333333333


Q ss_pred             HH-HHHHHHHcCCCCChhHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 000951          861 HF-VLRGMAEKGLTPKCTQYITLINGMCRVGNFQGAFKLKDEMEALGISSSDVAESAMVRGLAHCGKVEEAMLVLNRMLR  939 (1211)
Q Consensus       861 ~~-~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~  939 (1211)
                      +. +.+.+.......+......-+..|++.|++++|++......      +.++...-+.++.+..+.+-|.+.+++|.+
T Consensus        92 ~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~  165 (299)
T KOG3081|consen   92 LASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQQ  165 (299)
T ss_pred             HHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            33 33334332333333444444567889999999988877632      122333335677788889999999999887


Q ss_pred             CCcccCHHHHHHHHHHhhh----hCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCccC
Q 000951          940 MRLVPTIATFTTLIHKFCK----EAKFVDALKLKGTMELSGVKLDVVSYNVLISGLCANGDVMPAFELYEEMKHKGLCPN 1015 (1211)
Q Consensus       940 ~~~~p~~~~~~~L~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~p~ 1015 (1211)
                      .+   +..+...|+.++.+    .+.+.+|.-+|+.+-+. ..|.+...+..+.++...|+|++|..+.+..+.+. .++
T Consensus       166 id---ed~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd-~~d  240 (299)
T KOG3081|consen  166 ID---EDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKD-AKD  240 (299)
T ss_pred             cc---hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhcc-CCC
Confidence            54   55566667766654    35688899899887652 26677788888888999999999999999987753 346


Q ss_pred             hhhHHHHHHHHHhcccchHHHHHHHHHHHHcCCcc
Q 000951         1016 STTYSVLIDAISKKENNLVKGEILLKDIQERGFIS 1050 (1211)
Q Consensus      1016 ~~~~~~l~~~~~~~~~~~~~a~~~~~~l~~~~~~~ 1050 (1211)
                      |.+.+.++-.....|+..+..+.++.+++...-.|
T Consensus       241 petL~Nliv~a~~~Gkd~~~~~r~l~QLk~~~p~h  275 (299)
T KOG3081|consen  241 PETLANLIVLALHLGKDAEVTERNLSQLKLSHPEH  275 (299)
T ss_pred             HHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCcc
Confidence            78888877777888888887788888876554333

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=98.24  E-value=0.00026  Score=77.53  Aligned_cols=129  Identities=16%  Similarity=0.090  Sum_probs=110.6

Q ss_pred             hHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCcccCHHHHHHHHHHh
Q 000951          877 TQYITLINGMCRVGNFQGAFKLKDEMEALGISSSDVAESAMVRGLAHCGKVEEAMLVLNRMLRMRLVPTIATFTTLIHKF  956 (1211)
Q Consensus       877 ~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~p~~~~~~~L~~~~  956 (1211)
                      ......+-.+...|++++|+..++.++.. .|.++..+...++++.+.++.++|.+.+++++...|. ....+.+++.+|
T Consensus       307 aa~YG~A~~~~~~~~~d~A~~~l~~L~~~-~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~-~~~l~~~~a~al  384 (484)
T COG4783         307 AAQYGRALQTYLAGQYDEALKLLQPLIAA-QPDNPYYLELAGDILLEANKAKEAIERLKKALALDPN-SPLLQLNLAQAL  384 (484)
T ss_pred             HHHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC-ccHHHHHHHHHH
Confidence            45566666778899999999999998865 5777777888899999999999999999999998765 588999999999


Q ss_pred             hhhCCHHHHHHHHHHHHhcCCCC-chHHHHHHHHHHHhCCChhHHHHHHHHHHH
Q 000951          957 CKEAKFVDALKLKGTMELSGVKL-DVVSYNVLISGLCANGDVMPAFELYEEMKH 1009 (1211)
Q Consensus       957 ~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 1009 (1211)
                      .+.|++.+|+.+++.....  .| |+..|..|+.+|...|+..++...+.+...
T Consensus       385 l~~g~~~eai~~L~~~~~~--~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~  436 (484)
T COG4783         385 LKGGKPQEAIRILNRYLFN--DPEDPNGWDLLAQAYAELGNRAEALLARAEGYA  436 (484)
T ss_pred             HhcCChHHHHHHHHHHhhc--CCCCchHHHHHHHHHHHhCchHHHHHHHHHHHH
Confidence            9999999999998766544  67 455899999999999999999988877644

>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length

Probab=98.22  E-value=0.015  Score=63.18  Aligned_cols=202  Identities=11%  Similarity=0.094  Sum_probs=105.8

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhH-------HHHHHHHHh----cCcHHHHHHHHHHHHHCCCCCC-
Q 000951          773 TCHSLILGFCETGMLEVGFKFLKKMIAEGTMVDCFTF-------NVLMRKCCE----AGEMGKAFDLFNIMNMLGVVPD-  840 (1211)
Q Consensus       773 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~-------~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~-  840 (1211)
                      ++..++....+.++-.+|.+.+.-+..  +.|+....       ..+.++.+.    .-+..+-+.+|......++... 
T Consensus       300 ~F~~~Ls~~Vk~~~T~~a~q~l~lL~~--ldp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiDrqQ  377 (549)
T PF07079_consen  300 RFGNLLSFKVKQVQTEEAKQYLALLKI--LDPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDIDRQQ  377 (549)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHh--cCCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcccHHH
Confidence            455555666666666666666665554  33432211       122223321    1123334455555554433322 


Q ss_pred             hhhHH-HHHHHHHhhcc-hhhHHHHHHHHHHcCCCCCh-h----HHHHHHHHHHhc---CChhhHHHHHHHHHHcCCCCc
Q 000951          841 TNTQD-AIIMGLKRIAA-FQESHFVLRGMAEKGLTPKC-T----QYITLINGMCRV---GNFQGAFKLKDEMEALGISSS  910 (1211)
Q Consensus       841 ~~~~~-~l~~~~~~~g~-~~eA~~~~~~~~~~g~~p~~-~----~~~~l~~~~~~~---g~~~eA~~~~~~~~~~~~~~~  910 (1211)
                      .+.|. .-+.-+.+.|. -++|+.+++.+++  +.|.. .    ++..+-.+|.++   ....+-+.+-+-+.+.|++|-
T Consensus       378 Lvh~L~~~Ak~lW~~g~~dekalnLLk~il~--ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i  455 (549)
T PF07079_consen  378 LVHYLVFGAKHLWEIGQCDEKALNLLKLILQ--FTNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPI  455 (549)
T ss_pred             HHHHHHHHHHHHHhcCCccHHHHHHHHHHHH--hccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcc
Confidence            12221 22233455555 7888999999888  66633 2    222222222211   122223333333345666663


Q ss_pred             ----hHHHHHHHHH--HHhcCCHHHHHHHHHHHHhCCcccCHHHHHHHHHHhhhhCCHHHHHHHHHHHHhcCCCCchHHH
Q 000951          911 ----DVAESAMVRG--LAHCGKVEEAMLVLNRMLRMRLVPTIATFTTLIHKFCKEAKFVDALKLKGTMELSGVKLDVVSY  984 (1211)
Q Consensus       911 ----~~~~~~l~~~--~~~~g~~~eA~~~~~~~~~~~~~p~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~  984 (1211)
                          ..+-+.+.++  +...|++.++.-.-.=..+  +.|++.+|..+|-++....+|+||..++..+     .|+...+
T Consensus       456 ~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~--iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~L-----P~n~~~~  528 (549)
T PF07079_consen  456 TISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTK--IAPSPQAYRLLGLCLMENKRYQEAWEYLQKL-----PPNERMR  528 (549)
T ss_pred             cccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH--hCCcHHHHHHHHHHHHHHhhHHHHHHHHHhC-----CCchhhH
Confidence                3355566543  5667888887654333333  4467888888888888888888888876532     5665555


Q ss_pred             H
Q 000951          985 N  985 (1211)
Q Consensus       985 ~  985 (1211)
                      +
T Consensus       529 d  529 (549)
T PF07079_consen  529 D  529 (549)
T ss_pred             H
Confidence            3

Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.21  E-value=0.0005  Score=68.52  Aligned_cols=152  Identities=16%  Similarity=0.093  Sum_probs=85.2

Q ss_pred             HhhcchhhHHHHHHHHHHcCCCCCh-hHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHH
Q 000951          852 KRIAAFQESHFVLRGMAEKGLTPKC-TQYITLINGMCRVGNFQGAFKLKDEMEALGISSSDVAESAMVRGLAHCGKVEEA  930 (1211)
Q Consensus       852 ~~~g~~~eA~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA  930 (1211)
                      ...|+.+-|...+++..+  .-|.. ..-..-+..+...|++++|+++|+..++.+ |.|..++..-+.+.-..|+.-+|
T Consensus        63 ld~~~~~lAq~C~~~L~~--~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~a  139 (289)
T KOG3060|consen   63 LDTGRDDLAQKCINQLRD--RFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEA  139 (289)
T ss_pred             HHhcchHHHHHHHHHHHH--hCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHH
Confidence            344455555555555443  22432 222223334445666666666666666553 44555555555666666666677


Q ss_pred             HHHHHHHHhCCcccCHHHHHHHHHHhhhhCCHHHHHHHHHHHHhcCCCCchH-HHHHHHHHHHhCC---ChhHHHHHHHH
Q 000951          931 MLVLNRMLRMRLVPTIATFTTLIHKFCKEAKFVDALKLKGTMELSGVKLDVV-SYNVLISGLCANG---DVMPAFELYEE 1006 (1211)
Q Consensus       931 ~~~~~~~~~~~~~p~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g---~~~~a~~~~~~ 1006 (1211)
                      ++-+...++.-+. |..+|..|+.+|...|+++.|.-+++++.-.  .|-++ .+..++..+.-.|   +..-+.++|..
T Consensus       140 Ik~ln~YL~~F~~-D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~--~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~  216 (289)
T KOG3060|consen  140 IKELNEYLDKFMN-DQEAWHELAEIYLSEGDFEKAAFCLEELLLI--QPFNPLYFQRLAEVLYTQGGAENLELARKYYER  216 (289)
T ss_pred             HHHHHHHHHHhcC-cHHHHHHHHHHHHhHhHHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            7666666665444 6777777777777777777777776666654  66444 3344555433333   33445666666


Q ss_pred             HHH
Q 000951         1007 MKH 1009 (1211)
Q Consensus      1007 ~~~ 1009 (1211)
                      .++
T Consensus       217 alk  219 (289)
T KOG3060|consen  217 ALK  219 (289)
T ss_pred             HHH
Confidence            554

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=98.13  E-value=3.5e-05  Score=72.21  Aligned_cols=102  Identities=11%  Similarity=-0.030  Sum_probs=80.9

Q ss_pred             CC-CC-hhHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCcccCHHHH
Q 000951          872 LT-PK-CTQYITLINGMCRVGNFQGAFKLKDEMEALGISSSDVAESAMVRGLAHCGKVEEAMLVLNRMLRMRLVPTIATF  949 (1211)
Q Consensus       872 ~~-p~-~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~p~~~~~  949 (1211)
                      +. ++ ......++..+...|++++|.++|+.+.... +-+...|..|+-++...|++++|++.|.++...+|. |+..+
T Consensus        29 ~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~D-p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~d-dp~~~  106 (157)
T PRK15363         29 DDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYD-AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKID-APQAP  106 (157)
T ss_pred             CChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CchHH
Confidence            44 43 3667777888888888888888888887653 456667788888888888888888888888888866 88888


Q ss_pred             HHHHHHhhhhCCHHHHHHHHHHHHhc
Q 000951          950 TTLIHKFCKEAKFVDALKLKGTMELS  975 (1211)
Q Consensus       950 ~~L~~~~~~~g~~~~A~~~~~~~~~~  975 (1211)
                      ..++.++...|+.+.|.+.|+.....
T Consensus       107 ~~ag~c~L~lG~~~~A~~aF~~Ai~~  132 (157)
T PRK15363        107 WAAAECYLACDNVCYAIKALKAVVRI  132 (157)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            88888888888888888888765544

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.12  E-value=2.9e-05  Score=79.51  Aligned_cols=130  Identities=16%  Similarity=0.112  Sum_probs=97.7

Q ss_pred             HHHHHhcCChhhHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCcccCHHHHHHHHHHhhhhCCH
Q 000951          883 INGMCRVGNFQGAFKLKDEMEALGISSSDVAESAMVRGLAHCGKVEEAMLVLNRMLRMRLVPTIATFTTLIHKFCKEAKF  962 (1211)
Q Consensus       883 ~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~p~~~~~~~L~~~~~~~g~~  962 (1211)
                      ++-..+.++|++|+..|.++++.. |.+++.|..-+.+|.+.|.++.|++-.+.++..++. ...+|..||.+|...|++
T Consensus        88 GN~~m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~-yskay~RLG~A~~~~gk~  165 (304)
T KOG0553|consen   88 GNKLMKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPH-YSKAYGRLGLAYLALGKY  165 (304)
T ss_pred             HHHHHHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChH-HHHHHHHHHHHHHccCcH
Confidence            455667899999999999999873 566777778899999999999999999999998765 778999999999999999


Q ss_pred             HHHHHHHHHHHhcCCCCchHHHH-HHHHHHHhCCChh---HHHHHHHHHHHcCCccCh
Q 000951          963 VDALKLKGTMELSGVKLDVVSYN-VLISGLCANGDVM---PAFELYEEMKHKGLCPNS 1016 (1211)
Q Consensus       963 ~~A~~~~~~~~~~~~~p~~~~~~-~l~~~~~~~g~~~---~a~~~~~~~~~~g~~p~~ 1016 (1211)
                      ++|++.|+...  .++|++.+|. .|-.+-.+.+.-+   .+..-.+.....|.-|+.
T Consensus       166 ~~A~~aykKaL--eldP~Ne~~K~nL~~Ae~~l~e~~~~~~~~~~~d~~~~ig~~Pd~  221 (304)
T KOG0553|consen  166 EEAIEAYKKAL--ELDPDNESYKSNLKIAEQKLNEPKSSAQASGSFDMAGLIGAFPDS  221 (304)
T ss_pred             HHHHHHHHhhh--ccCCCcHHHHHHHHHHHHHhcCCCcccccccchhhhhhccCCccc
Confidence            99999988544  5599888774 4444444444333   333333333334444554

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=98.12  E-value=8.4e-05  Score=71.80  Aligned_cols=115  Identities=17%  Similarity=0.148  Sum_probs=68.8

Q ss_pred             cCChhhHHHHHHHHHHcCCCCc---hHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCcccC--HHHHHHHHHHhhhhCCHH
Q 000951          889 VGNFQGAFKLKDEMEALGISSS---DVAESAMVRGLAHCGKVEEAMLVLNRMLRMRLVPT--IATFTTLIHKFCKEAKFV  963 (1211)
Q Consensus       889 ~g~~~eA~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~p~--~~~~~~L~~~~~~~g~~~  963 (1211)
                      .+++..+...++.+.+.. +.+   ..+...++..+...|++++|...|+.+++..+.|.  ..+...|+.++...|+++
T Consensus        24 ~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d  102 (145)
T PF09976_consen   24 AGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYD  102 (145)
T ss_pred             CCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHH
Confidence            566666666666665432 222   22334456667777777777777777777653332  345566677777777777


Q ss_pred             HHHHHHHHHHhcCCCCchHHHHHHHHHHHhCCChhHHHHHHHH
Q 000951          964 DALKLKGTMELSGVKLDVVSYNVLISGLCANGDVMPAFELYEE 1006 (1211)
Q Consensus       964 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 1006 (1211)
                      +|+..++.....  ...+..+...+.+|...|++++|...|+.
T Consensus       103 ~Al~~L~~~~~~--~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~  143 (145)
T PF09976_consen  103 EALATLQQIPDE--AFKALAAELLGDIYLAQGDYDEARAAYQK  143 (145)
T ss_pred             HHHHHHHhccCc--chHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            777766442211  11233556666777777777777777765

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=98.08  E-value=0.00073  Score=73.61  Aligned_cols=91  Identities=12%  Similarity=0.129  Sum_probs=46.1

Q ss_pred             HHHHHhc-CCHHHHHHHHHHHHhCCc---cc--CHHHHHHHHHHhhhhCCHHHHHHHHHHHHhcCCCC-----chHH-HH
Q 000951          918 VRGLAHC-GKVEEAMLVLNRMLRMRL---VP--TIATFTTLIHKFCKEAKFVDALKLKGTMELSGVKL-----DVVS-YN  985 (1211)
Q Consensus       918 ~~~~~~~-g~~~eA~~~~~~~~~~~~---~p--~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~p-----~~~~-~~  985 (1211)
                      +.+|... |++++|++.|+++.+.--   .+  -..++..++..+.+.|+|++|+++|+......++.     +... +.
T Consensus       121 A~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l  200 (282)
T PF14938_consen  121 AEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFL  200 (282)
T ss_dssp             HHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHH
Confidence            3344444 556666666666554310   11  12445566667777777777777776655432221     1111 22


Q ss_pred             HHHHHHHhCCChhHHHHHHHHHH
Q 000951          986 VLISGLCANGDVMPAFELYEEMK 1008 (1211)
Q Consensus       986 ~l~~~~~~~g~~~~a~~~~~~~~ 1008 (1211)
                      ..+-++...|+...|.+.++...
T Consensus       201 ~a~l~~L~~~D~v~A~~~~~~~~  223 (282)
T PF14938_consen  201 KAILCHLAMGDYVAARKALERYC  223 (282)
T ss_dssp             HHHHHHHHTT-HHHHHHHHHHHG
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHH
Confidence            33335566777777777777663

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=98.07  E-value=8.7e-05  Score=71.72  Aligned_cols=90  Identities=14%  Similarity=0.127  Sum_probs=44.1

Q ss_pred             HHHHHHHHHhcCChhhHHHHHHHHHHcCCCCc--hHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCcccCHHHHHHHHHHh
Q 000951          879 YITLINGMCRVGNFQGAFKLKDEMEALGISSS--DVAESAMVRGLAHCGKVEEAMLVLNRMLRMRLVPTIATFTTLIHKF  956 (1211)
Q Consensus       879 ~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~p~~~~~~~L~~~~  956 (1211)
                      ...++..+...|++++|...|+.+.+....+.  ..+...++.++...|++++|+..++.+...  ...+..+..+|.+|
T Consensus        51 ~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~~~~--~~~~~~~~~~Gdi~  128 (145)
T PF09976_consen   51 ALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDEALATLQQIPDE--AFKALAAELLGDIY  128 (145)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccCc--chHHHHHHHHHHHH
Confidence            33444555555555555555555554321111  123334455555555566665555442211  11344555556666


Q ss_pred             hhhCCHHHHHHHHH
Q 000951          957 CKEAKFVDALKLKG  970 (1211)
Q Consensus       957 ~~~g~~~~A~~~~~  970 (1211)
                      ...|++++|...|+
T Consensus       129 ~~~g~~~~A~~~y~  142 (145)
T PF09976_consen  129 LAQGDYDEARAAYQ  142 (145)
T ss_pred             HHCCCHHHHHHHHH
Confidence            66666666665554

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=98.00  E-value=0.00093  Score=63.02  Aligned_cols=135  Identities=10%  Similarity=0.061  Sum_probs=103.6

Q ss_pred             CCCChhHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCccc-CHHHHH
Q 000951          872 LTPKCTQYITLINGMCRVGNFQGAFKLKDEMEALGISSSDVAESAMVRGLAHCGKVEEAMLVLNRMLRMRLVP-TIATFT  950 (1211)
Q Consensus       872 ~~p~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~p-~~~~~~  950 (1211)
                      +.|....-..|+++....|++.||...|+++..--+-.|+...-.++.+....++..+|...++++.+.+|.- ++....
T Consensus        85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~L  164 (251)
T COG4700          85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHL  164 (251)
T ss_pred             hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchH
Confidence            5677777778888888888888998888888865567777788888888888899999999999888876322 455667


Q ss_pred             HHHHHhhhhCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhCCChhHHHHHHHHHH
Q 000951          951 TLIHKFCKEAKFVDALKLKGTMELSGVKLDVVSYNVLISGLCANGDVMPAFELYEEMK 1008 (1211)
Q Consensus       951 ~L~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 1008 (1211)
                      .++..|...|++++|+..|+.....  -|++..-...+..++++|+.+++..-+..+.
T Consensus       165 l~aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~aq~~~v~  220 (251)
T COG4700         165 LFARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREANAQYVAVV  220 (251)
T ss_pred             HHHHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence            7888899999999999988876665  6776655555566778888877765554443

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=97.97  E-value=0.00018  Score=71.89  Aligned_cols=85  Identities=13%  Similarity=0.055  Sum_probs=54.5

Q ss_pred             hHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCc--hHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCcccCHHHHHHHHH
Q 000951          877 TQYITLINGMCRVGNFQGAFKLKDEMEALGISSS--DVAESAMVRGLAHCGKVEEAMLVLNRMLRMRLVPTIATFTTLIH  954 (1211)
Q Consensus       877 ~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~p~~~~~~~L~~  954 (1211)
                      ..+..++..+...|++++|...|+++++....+.  ...+..++.++.+.|++++|+..++++++..+. +...+..++.
T Consensus        36 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~  114 (172)
T PRK02603         36 FVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPK-QPSALNNIAV  114 (172)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHHHHH
Confidence            4556666666667777777777777664422221  345666777777777777777777777776544 5666666777


Q ss_pred             HhhhhCCH
Q 000951          955 KFCKEAKF  962 (1211)
Q Consensus       955 ~~~~~g~~  962 (1211)
                      ++...|+.
T Consensus       115 ~~~~~g~~  122 (172)
T PRK02603        115 IYHKRGEK  122 (172)
T ss_pred             HHHHcCCh
Confidence            77666663

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=97.95  E-value=0.042  Score=58.49  Aligned_cols=281  Identities=12%  Similarity=0.069  Sum_probs=171.1

Q ss_pred             cCChHHHHHHHHHHHHCCCCCCHHHHHHHHH--HHHccCChHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHhcCChHH
Q 000951          714 MGNMMMANDLLSTMRSRKLCPSLATYNILLH--GYSKKKDLLMCSMLLNTMKMEGLLPDKL--TCHSLILGFCETGMLEV  789 (1211)
Q Consensus       714 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~--~~~~~g~~~~A~~~~~~~~~~g~~p~~~--~~~~l~~~~~~~g~~~~  789 (1211)
                      .|+-..|.++-.+..+. +..|......|+.  +-.-.|++++|.+-|+.|+.   .|...  -...|...-.+.|..+-
T Consensus        97 AGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~---dPEtRllGLRgLyleAqr~Garea  172 (531)
T COG3898          97 AGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLD---DPETRLLGLRGLYLEAQRLGAREA  172 (531)
T ss_pred             cCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhc---ChHHHHHhHHHHHHHHHhcccHHH
Confidence            56666666665554421 2224444444443  33446888888888888875   23222  22233333346788888


Q ss_pred             HHHHHHHHHHcCCCCC-HhhHHHHHHHHHhcCcHHHHHHHHHHHHH-CCCCCChhhH--HHHHHH---HHhhcchhhHHH
Q 000951          790 GFKFLKKMIAEGTMVD-CFTFNVLMRKCCEAGEMGKAFDLFNIMNM-LGVVPDTNTQ--DAIIMG---LKRIAAFQESHF  862 (1211)
Q Consensus       790 A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~--~~l~~~---~~~~g~~~eA~~  862 (1211)
                      |.++-+.+...  .|. ...+...+...+..|+|+.|+++.+.-.+ .-+.++..--  ..|..+   -.-..+...|..
T Consensus       173 Ar~yAe~Aa~~--Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~  250 (531)
T COG3898         173 ARHYAERAAEK--APQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARD  250 (531)
T ss_pred             HHHHHHHHHhh--ccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHH
Confidence            88888877663  333 56677777888888888888888876543 2233442211  111111   111234566666


Q ss_pred             HHHHHHHcCCCCCh-hHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHH-HHHHHHHHhC
Q 000951          863 VLRGMAEKGLTPKC-TQYITLINGMCRVGNFQGAFKLKDEMEALGISSSDVAESAMVRGLAHCGKVEEA-MLVLNRMLRM  940 (1211)
Q Consensus       863 ~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA-~~~~~~~~~~  940 (1211)
                      .-.+..+  +.||. -.-..-+.++.+.|+..++-.+++.+-+.  .|.+.++..  ..+.+.|+.... ++=.++...+
T Consensus       251 ~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~--ePHP~ia~l--Y~~ar~gdta~dRlkRa~~L~sl  324 (531)
T COG3898         251 DALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKA--EPHPDIALL--YVRARSGDTALDRLKRAKKLESL  324 (531)
T ss_pred             HHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhc--CCChHHHHH--HHHhcCCCcHHHHHHHHHHHHhc
Confidence            6667666  77875 33445567888999999999999999865  566655433  334566652221 1222333344


Q ss_pred             CcccCHHHHHHHHHHhhhhCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhC-CChhHHHHHHHHHHH
Q 000951          941 RLVPTIATFTTLIHKFCKEAKFVDALKLKGTMELSGVKLDVVSYNVLISGLCAN-GDVMPAFELYEEMKH 1009 (1211)
Q Consensus       941 ~~~p~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-g~~~~a~~~~~~~~~ 1009 (1211)
                      .++ +......++.+-...|++..|..--+...  ...|....|..|+.+-... |+-.++....-+..+
T Consensus       325 k~n-naes~~~va~aAlda~e~~~ARa~Aeaa~--r~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~  391 (531)
T COG3898         325 KPN-NAESSLAVAEAALDAGEFSAARAKAEAAA--REAPRESAYLLLADIEEAETGDQGKVRQWLAQAVK  391 (531)
T ss_pred             Ccc-chHHHHHHHHHHHhccchHHHHHHHHHHh--hhCchhhHHHHHHHHHhhccCchHHHHHHHHHHhc
Confidence            444 77788888888888999988877644333  3378878888888865554 888888777665544

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=97.89  E-value=0.00019  Score=80.61  Aligned_cols=97  Identities=10%  Similarity=-0.023  Sum_probs=61.7

Q ss_pred             HHHHHHhcCChhhHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCcccCHHHHHHHHHHhhhhCC
Q 000951          882 LINGMCRVGNFQGAFKLKDEMEALGISSSDVAESAMVRGLAHCGKVEEAMLVLNRMLRMRLVPTIATFTTLIHKFCKEAK  961 (1211)
Q Consensus       882 l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~p~~~~~~~L~~~~~~~g~  961 (1211)
                      .+......|++++|+..|+++++.. +.+..++..++.+|...|++++|+..++++++.++. +..+|..+|.+|...|+
T Consensus         8 ~a~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~-~~~a~~~lg~~~~~lg~   85 (356)
T PLN03088          8 KAKEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELDPS-LAKAYLRKGTACMKLEE   85 (356)
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHhCC
Confidence            3445556666666666666666552 445556666666666677777777777777666654 66666677777777777


Q ss_pred             HHHHHHHHHHHHhcCCCCchH
Q 000951          962 FVDALKLKGTMELSGVKLDVV  982 (1211)
Q Consensus       962 ~~~A~~~~~~~~~~~~~p~~~  982 (1211)
                      +++|+..|+.....  .|+..
T Consensus        86 ~~eA~~~~~~al~l--~P~~~  104 (356)
T PLN03088         86 YQTAKAALEKGASL--APGDS  104 (356)
T ss_pred             HHHHHHHHHHHHHh--CCCCH
Confidence            77777766655544  56444

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=97.89  E-value=0.00018  Score=80.95  Aligned_cols=104  Identities=13%  Similarity=0.005  Sum_probs=80.3

Q ss_pred             HHHHHhhcchhhHHHHHHHHHHcCCCCC-hhHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCC
Q 000951          848 IMGLKRIAAFQESHFVLRGMAEKGLTPK-CTQYITLINGMCRVGNFQGAFKLKDEMEALGISSSDVAESAMVRGLAHCGK  926 (1211)
Q Consensus       848 ~~~~~~~g~~~eA~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~  926 (1211)
                      +..+...|++++|+..|+++++  ..|+ ...|..++.++...|++++|+..++++++.. +.+..+|..++.+|...|+
T Consensus         9 a~~a~~~~~~~~Ai~~~~~Al~--~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~   85 (356)
T PLN03088          9 AKEAFVDDDFALAVDLYTQAID--LDPNNAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEE   85 (356)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCC
Confidence            4455677888888888888887  7775 4778888888888888888888888888763 5567788888888888899


Q ss_pred             HHHHHHHHHHHHhCCcccCHHHHHHHHHH
Q 000951          927 VEEAMLVLNRMLRMRLVPTIATFTTLIHK  955 (1211)
Q Consensus       927 ~~eA~~~~~~~~~~~~~p~~~~~~~L~~~  955 (1211)
                      +++|+..|+++++.+|. +......+..+
T Consensus        86 ~~eA~~~~~~al~l~P~-~~~~~~~l~~~  113 (356)
T PLN03088         86 YQTAKAALEKGASLAPG-DSRFTKLIKEC  113 (356)
T ss_pred             HHHHHHHHHHHHHhCCC-CHHHHHHHHHH
Confidence            99999999888887765 55555554443

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=97.86  E-value=0.00028  Score=78.61  Aligned_cols=87  Identities=15%  Similarity=0.062  Sum_probs=40.7

Q ss_pred             HHHHHHhcCChhhHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCcccCHHHHHHHHHHhhhhCC
Q 000951          882 LINGMCRVGNFQGAFKLKDEMEALGISSSDVAESAMVRGLAHCGKVEEAMLVLNRMLRMRLVPTIATFTTLIHKFCKEAK  961 (1211)
Q Consensus       882 l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~p~~~~~~~L~~~~~~~g~  961 (1211)
                      ++..+...++-.+|.++++++++. .+.+...+...+..+.+.++++.|+++.+++.+..|. +..+|..|+.+|...|+
T Consensus       206 LA~v~l~~~~E~~AI~ll~~aL~~-~p~d~~LL~~Qa~fLl~k~~~~lAL~iAk~av~lsP~-~f~~W~~La~~Yi~~~d  283 (395)
T PF09295_consen  206 LARVYLLMNEEVEAIRLLNEALKE-NPQDSELLNLQAEFLLSKKKYELALEIAKKAVELSPS-EFETWYQLAECYIQLGD  283 (395)
T ss_pred             HHHHHHhcCcHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCch-hHHHHHHHHHHHHhcCC
Confidence            334444444444444444444432 2333333444444455555555555555555554433 44455555555555555


Q ss_pred             HHHHHHHHH
Q 000951          962 FVDALKLKG  970 (1211)
Q Consensus       962 ~~~A~~~~~  970 (1211)
                      +++|+..+.
T Consensus       284 ~e~ALlaLN  292 (395)
T PF09295_consen  284 FENALLALN  292 (395)
T ss_pred             HHHHHHHHh
Confidence            555554433

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=97.85  E-value=0.056  Score=61.58  Aligned_cols=327  Identities=12%  Similarity=0.065  Sum_probs=176.6

Q ss_pred             cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCC----HHHHHHHHHHHHHcCCHH
Q 000951          608 SGNLWEAIVLLDEMVQFNLLPDRYTYTILLAGLCRKGKVVSALLFFEKVVSKRTFSPN----NVMFTCLVDGLFKAGQSK  683 (1211)
Q Consensus       608 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~  683 (1211)
                      -|++++|.++|-+|..+++         -+..+.+.|++-...++++.    |+...|    ...+..+...+.....|+
T Consensus       747 ~g~feeaek~yld~drrDL---------Aielr~klgDwfrV~qL~r~----g~~d~dD~~~e~A~r~ig~~fa~~~~We  813 (1189)
T KOG2041|consen  747 YGEFEEAEKLYLDADRRDL---------AIELRKKLGDWFRVYQLIRN----GGSDDDDEGKEDAFRNIGETFAEMMEWE  813 (1189)
T ss_pred             hcchhHhhhhhhccchhhh---------hHHHHHhhhhHHHHHHHHHc----cCCCcchHHHHHHHHHHHHHHHHHHHHH
Confidence            4788899888888766532         24456677888777666643    211222    467888999999999999


Q ss_pred             HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHH
Q 000951          684 AAMHISKIMDKEGVYPDTIAFNAVMDGFSRMGNMMMANDLLSTMRSRKLCPSLATYNILLHGYSKKKDLLMCSMLLNTMK  763 (1211)
Q Consensus       684 ~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~  763 (1211)
                      +|.+.|.+-...         ...+++|.+...+++-+.+.+.+.+     +....-.++.++...|--++|.+.|-+--
T Consensus       814 ~A~~yY~~~~~~---------e~~~ecly~le~f~~LE~la~~Lpe-----~s~llp~~a~mf~svGMC~qAV~a~Lr~s  879 (1189)
T KOG2041|consen  814 EAAKYYSYCGDT---------ENQIECLYRLELFGELEVLARTLPE-----DSELLPVMADMFTSVGMCDQAVEAYLRRS  879 (1189)
T ss_pred             HHHHHHHhccch---------HhHHHHHHHHHhhhhHHHHHHhcCc-----ccchHHHHHHHHHhhchHHHHHHHHHhcc
Confidence            999888765211         2456777777777777666665543     55666678888899999999988875542


Q ss_pred             HCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHH-HHHHHHhcCcHHHHHHHHHHHHHCCCCCChh
Q 000951          764 MEGLLPDKLTCHSLILGFCETGMLEVGFKFLKKMIAEGTMVDCFTFNV-LMRKCCEAGEMGKAFDLFNIMNMLGVVPDTN  842 (1211)
Q Consensus       764 ~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~  842 (1211)
                      .    |.     ..+.+|...++|.+|.++-++..-    |...+..+ -..-+...++.-+|++..+            
T Consensus       880 ~----pk-----aAv~tCv~LnQW~~avelaq~~~l----~qv~tliak~aaqll~~~~~~eaIe~~R------------  934 (1189)
T KOG2041|consen  880 L----PK-----AAVHTCVELNQWGEAVELAQRFQL----PQVQTLIAKQAAQLLADANHMEAIEKDR------------  934 (1189)
T ss_pred             C----cH-----HHHHHHHHHHHHHHHHHHHHhccc----hhHHHHHHHHHHHHHhhcchHHHHHHhh------------
Confidence            2    22     245678888899999888765432    22221111 1112333455555555443            


Q ss_pred             hHHHHHHHHHhhcchhhHHHHHHHHHH----cCCCCCh-hHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCchHHHHHH
Q 000951          843 TQDAIIMGLKRIAAFQESHFVLRGMAE----KGLTPKC-TQYITLINGMCRVGNFQGAFKLKDEMEALGISSSDVAESAM  917 (1211)
Q Consensus       843 ~~~~l~~~~~~~g~~~eA~~~~~~~~~----~g~~p~~-~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~l  917 (1211)
                                +.|++-.|..++.+|.+    ++..|-. .-...|+..+.  .+.-++.+-.++...+|...+...    
T Consensus       935 ----------ka~~~~daarll~qmae~e~~K~~p~lr~KklYVL~AlLv--E~h~~~ik~~~~~~~~g~~~dat~----  998 (1189)
T KOG2041|consen  935 ----------KAGRHLDAARLLSQMAEREQEKYVPYLRLKKLYVLGALLV--ENHRQTIKELRKIDKHGFLEDATD----  998 (1189)
T ss_pred             ----------hcccchhHHHHHHHHhHHHhhccCCHHHHHHHHHHHHHHH--HHHHHHHHHhhhhhhcCcchhhhh----
Confidence                      34555556666666654    2222221 22223333222  223334444444333332222111    


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhCCcccCHHHHHHHHHHhhhhCCHHHHHHHHHHHHhcC-CCCchHHHHHHHHHHHhCCC
Q 000951          918 VRGLAHCGKVEEAMLVLNRMLRMRLVPTIATFTTLIHKFCKEAKFVDALKLKGTMELSG-VKLDVVSYNVLISGLCANGD  996 (1211)
Q Consensus       918 ~~~~~~~g~~~eA~~~~~~~~~~~~~p~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~-~~p~~~~~~~l~~~~~~~g~  996 (1211)
                         +...|-..++-.+.+...+-   ..+..+..|+.-....|.+..|++---.+.... +-|....|..++-+-+....
T Consensus       999 ---lles~~l~~~~ri~~n~Wrg---AEAyHFmilAQrql~eg~v~~Al~Tal~L~DYEd~lpP~eiySllALaaca~ra 1072 (1189)
T KOG2041|consen  999 ---LLESGLLAEQSRILENTWRG---AEAYHFMILAQRQLFEGRVKDALQTALILSDYEDFLPPAEIYSLLALAACAVRA 1072 (1189)
T ss_pred             ---hhhhhhhhhHHHHHHhhhhh---HHHHHHHHHHHHHHHhchHHHHHHHHhhhccHhhcCCHHHHHHHHHHHHhhhhh
Confidence               12223333333333332220   122333445555566799999987511112111 12434466655555555555


Q ss_pred             hhHHHHHHHHHH
Q 000951          997 VMPAFELYEEMK 1008 (1211)
Q Consensus       997 ~~~a~~~~~~~~ 1008 (1211)
                      +--..+.+-++.
T Consensus      1073 FGtCSKAfmkLe 1084 (1189)
T KOG2041|consen 1073 FGTCSKAFMKLE 1084 (1189)
T ss_pred             hhhhHHHHHHHH
Confidence            555555554443

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=97.85  E-value=0.00024  Score=66.21  Aligned_cols=62  Identities=16%  Similarity=0.041  Sum_probs=25.1

Q ss_pred             HHHHHHHHHhcCChhhHHHHHHHHHHcCC--CCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 000951          879 YITLINGMCRVGNFQGAFKLKDEMEALGI--SSSDVAESAMVRGLAHCGKVEEAMLVLNRMLRM  940 (1211)
Q Consensus       879 ~~~l~~~~~~~g~~~eA~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~  940 (1211)
                      +..++.++...|++++|...|+.+.....  +....++..++.++.+.|++++|...++++++.
T Consensus        42 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~  105 (119)
T TIGR02795        42 HYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMSLQELGDKEKAKATLQQVIKR  105 (119)
T ss_pred             HHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHHHHhCChHHHHHHHHHHHHH
Confidence            33344444444444444444444433210  011233344444444444444444444444443

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=97.85  E-value=0.0019  Score=70.47  Aligned_cols=167  Identities=12%  Similarity=0.059  Sum_probs=82.0

Q ss_pred             HHHHccCChHHHHHHHHHHHHCC---CCCCH--HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHh
Q 000951          744 HGYSKKKDLLMCSMLLNTMKMEG---LLPDK--LTCHSLILGFCETGMLEVGFKFLKKMIAEGTMVDCFTFNVLMRKCCE  818 (1211)
Q Consensus       744 ~~~~~~g~~~~A~~~~~~~~~~g---~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~  818 (1211)
                      ..|...|++++|.+.|.++.+.-   -.+..  ..|......| +..++++|++.++++..               .|..
T Consensus        43 ~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~-k~~~~~~Ai~~~~~A~~---------------~y~~  106 (282)
T PF14938_consen   43 NCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCY-KKGDPDEAIECYEKAIE---------------IYRE  106 (282)
T ss_dssp             HHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHH-HHTTHHHHHHHHHHHHH---------------HHHH
T ss_pred             HHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-HhhCHHHHHHHHHHHHH---------------HHHh
Confidence            44556666777666666654310   00110  1222222333 23355566555555543               4556


Q ss_pred             cCcHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhh-cchhhHHHHHHHHHHc---CCCCC--hhHHHHHHHHHHhcCCh
Q 000951          819 AGEMGKAFDLFNIMNMLGVVPDTNTQDAIIMGLKRI-AAFQESHFVLRGMAEK---GLTPK--CTQYITLINGMCRVGNF  892 (1211)
Q Consensus       819 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~eA~~~~~~~~~~---g~~p~--~~~~~~l~~~~~~~g~~  892 (1211)
                      .|++..|-+.+.++               +..|... |++++|++.|+++.+.   .-.|.  ...+..++..+.+.|++
T Consensus       107 ~G~~~~aA~~~~~l---------------A~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y  171 (282)
T PF14938_consen  107 AGRFSQAAKCLKEL---------------AEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRY  171 (282)
T ss_dssp             CT-HHHHHHHHHHH---------------HHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-H
T ss_pred             cCcHHHHHHHHHHH---------------HHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCH
Confidence            66666655554433               3455555 6777777777776641   11221  14556666677777777


Q ss_pred             hhHHHHHHHHHHcCCCCc-----h-HHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 000951          893 QGAFKLKDEMEALGISSS-----D-VAESAMVRGLAHCGKVEEAMLVLNRMLRMR  941 (1211)
Q Consensus       893 ~eA~~~~~~~~~~~~~~~-----~-~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~  941 (1211)
                      ++|.+.|+++.......+     . ..+...+-++...|+...|.+.+++..+..
T Consensus       172 ~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~  226 (282)
T PF14938_consen  172 EEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQD  226 (282)
T ss_dssp             HHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTS
T ss_pred             HHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence            777777777654321111     1 122233445555666777777766666544

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=97.83  E-value=0.00029  Score=70.26  Aligned_cols=91  Identities=11%  Similarity=-0.050  Sum_probs=56.9

Q ss_pred             hHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCC--chHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCcccCHHHHHHHHH
Q 000951          877 TQYITLINGMCRVGNFQGAFKLKDEMEALGISS--SDVAESAMVRGLAHCGKVEEAMLVLNRMLRMRLVPTIATFTTLIH  954 (1211)
Q Consensus       877 ~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~p~~~~~~~L~~  954 (1211)
                      ..+..++..+...|++++|+..|++++.....+  ...++..++.++...|++++|++.++++++..+. ....+..++.
T Consensus        36 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~-~~~~~~~la~  114 (168)
T CHL00033         36 FTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPF-LPQALNNMAV  114 (168)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHH
Confidence            455666666666777777777777776542222  2235667777777777777777777777776543 4556666666


Q ss_pred             Hhh-------hhCCHHHHHHH
Q 000951          955 KFC-------KEAKFVDALKL  968 (1211)
Q Consensus       955 ~~~-------~~g~~~~A~~~  968 (1211)
                      ++.       ..|++++|+..
T Consensus       115 i~~~~~~~~~~~g~~~~A~~~  135 (168)
T CHL00033        115 ICHYRGEQAIEQGDSEIAEAW  135 (168)
T ss_pred             HHHHhhHHHHHcccHHHHHHH
Confidence            666       55565544433

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=97.82  E-value=0.00056  Score=68.38  Aligned_cols=112  Identities=14%  Similarity=0.070  Sum_probs=63.9

Q ss_pred             hHHHHHHHHHhcCcHHHHHHHHHHHHHCCCCCC--hhhHHHHHHHHHhhcchhhHHHHHHHHHHcCCCCC-hhHHHHHHH
Q 000951          808 TFNVLMRKCCEAGEMGKAFDLFNIMNMLGVVPD--TNTQDAIIMGLKRIAAFQESHFVLRGMAEKGLTPK-CTQYITLIN  884 (1211)
Q Consensus       808 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~g~~p~-~~~~~~l~~  884 (1211)
                      .+..++..|...|++++|+..|+++++....+.  ...+..++..+.+.|++++|+..++++++  ..|+ ...+..++.
T Consensus        37 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~lg~  114 (172)
T PRK02603         37 VYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALE--LNPKQPSALNNIAV  114 (172)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCcccHHHHHHHHH
Confidence            445555555566666666666666554322221  24556666666666666666666666666  5554 355556666


Q ss_pred             HHHhcCChhhHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCc
Q 000951          885 GMCRVGNFQGAFKLKDEMEALGISSSDVAESAMVRGLAHCGKVEEAMLVLNRMLRMRL  942 (1211)
Q Consensus       885 ~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~  942 (1211)
                      ++...|+...+...++.+..                     .+++|+++++++++.+|
T Consensus       115 ~~~~~g~~~~a~~~~~~A~~---------------------~~~~A~~~~~~a~~~~p  151 (172)
T PRK02603        115 IYHKRGEKAEEAGDQDEAEA---------------------LFDKAAEYWKQAIRLAP  151 (172)
T ss_pred             HHHHcCChHhHhhCHHHHHH---------------------HHHHHHHHHHHHHhhCc
Confidence            66666666555555444432                     15666777777766553

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=97.82  E-value=0.0002  Score=63.29  Aligned_cols=88  Identities=19%  Similarity=0.229  Sum_probs=39.9

Q ss_pred             HHHHHHHhcCChhhHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCcccCHHHHHHHHHHhhhhC
Q 000951          881 TLINGMCRVGNFQGAFKLKDEMEALGISSSDVAESAMVRGLAHCGKVEEAMLVLNRMLRMRLVPTIATFTTLIHKFCKEA  960 (1211)
Q Consensus       881 ~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~p~~~~~~~L~~~~~~~g  960 (1211)
                      .++..+...|++++|...++++.+.. +.+..++..++.++...|++++|.+.++++++..+. +..++..++.++...|
T Consensus         5 ~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~   82 (100)
T cd00189           5 NLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPD-NAKAYYNLGLAYYKLG   82 (100)
T ss_pred             HHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc-chhHHHHHHHHHHHHH
Confidence            33444444444444444444444331 222234444444444445555555555554444332 3344444555555555


Q ss_pred             CHHHHHHHHH
Q 000951          961 KFVDALKLKG  970 (1211)
Q Consensus       961 ~~~~A~~~~~  970 (1211)
                      ++++|...+.
T Consensus        83 ~~~~a~~~~~   92 (100)
T cd00189          83 KYEEALEAYE   92 (100)
T ss_pred             hHHHHHHHHH
Confidence            5555554444

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=97.80  E-value=0.076  Score=56.65  Aligned_cols=281  Identities=13%  Similarity=0.075  Sum_probs=141.6

Q ss_pred             CCChHHHHHHHHHHHHcCCCCCCHHHHHHHHH--HHHHcCCHHHHHHHHHHHHhCCCCCCHH--HHHHHHHHHHhcCChH
Q 000951          643 KGKVVSALLFFEKVVSKRTFSPNNVMFTCLVD--GLFKAGQSKAAMHISKIMDKEGVYPDTI--AFNAVMDGFSRMGNMM  718 (1211)
Q Consensus       643 ~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~--~~~~~g~~~~A~~~~~~~~~~g~~~~~~--~~~~li~~~~~~g~~~  718 (1211)
                      .|+-..|.++-.+..+.  +..|......|+.  .-.-.|+++.|.+-|+.|...   |...  -...|.-.-.+.|..+
T Consensus        97 AGda~lARkmt~~~~~l--lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---PEtRllGLRgLyleAqr~Gare  171 (531)
T COG3898          97 AGDASLARKMTARASKL--LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD---PETRLLGLRGLYLEAQRLGARE  171 (531)
T ss_pred             cCchHHHHHHHHHHHhh--hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---hHHHHHhHHHHHHHHHhcccHH
Confidence            55666666655554432  3344444444443  233457778888777777531   2211  1122322333577777


Q ss_pred             HHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCChHHHHHHHHHHHHCC-CCCCHHH--HHHHHH--HH-HhcCChHHHH
Q 000951          719 MANDLLSTMRSRKLCP-SLATYNILLHGYSKKKDLLMCSMLLNTMKMEG-LLPDKLT--CHSLIL--GF-CETGMLEVGF  791 (1211)
Q Consensus       719 ~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g-~~p~~~~--~~~l~~--~~-~~~g~~~~A~  791 (1211)
                      .|..+-++.-..  .| -...+...+...+..|+|+.|+++.+.-++.. +.++..-  -..|+.  +- .-..+...|.
T Consensus       172 aAr~yAe~Aa~~--Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar  249 (531)
T COG3898         172 AARHYAERAAEK--APQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASAR  249 (531)
T ss_pred             HHHHHHHHHHhh--ccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHH
Confidence            777777776643  44 45667777777788888888888877765432 2333321  111221  11 1123445555


Q ss_pred             HHHHHHHHcCCCCCHhhHH-HHHHHHHhcCcHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhcchhhHHHHHHHHHH-
Q 000951          792 KFLKKMIAEGTMVDCFTFN-VLMRKCCEAGEMGKAFDLFNIMNMLGVVPDTNTQDAIIMGLKRIAAFQESHFVLRGMAE-  869 (1211)
Q Consensus       792 ~~~~~~~~~~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~-  869 (1211)
                      ..-.+..+  +.||..--. .-...+.+.|+..++-.+++.+=+....|+      +...|....-.+-++.-++...+ 
T Consensus       250 ~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~------ia~lY~~ar~gdta~dRlkRa~~L  321 (531)
T COG3898         250 DDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPD------IALLYVRARSGDTALDRLKRAKKL  321 (531)
T ss_pred             HHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChH------HHHHHHHhcCCCcHHHHHHHHHHH
Confidence            55555555  444432211 112355666666666666666554332222      12223333333333333333332 


Q ss_pred             cCCCCCh-hHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCchHHHHHHHHHHHhc-CCHHHHHHHHHHHHhC
Q 000951          870 KGLTPKC-TQYITLINGMCRVGNFQGAFKLKDEMEALGISSSDVAESAMVRGLAHC-GKVEEAMLVLNRMLRM  940 (1211)
Q Consensus       870 ~g~~p~~-~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~eA~~~~~~~~~~  940 (1211)
                      ..++|++ ++...++.+-...|++..|..--+.+..  ..|...+|..|+++-... |+-.+....+-+++..
T Consensus       322 ~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r--~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~A  392 (531)
T COG3898         322 ESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAR--EAPRESAYLLLADIEEAETGDQGKVRQWLAQAVKA  392 (531)
T ss_pred             HhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhh--hCchhhHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence            1255544 5555555555566666555555444433  245555555555554333 6666666666665554

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=97.79  E-value=0.00036  Score=64.95  Aligned_cols=102  Identities=9%  Similarity=-0.054  Sum_probs=64.0

Q ss_pred             HHHHHHHHHHhcCChhhHHHHHHHHHHcCC--CCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCccc--CHHHHHHHH
Q 000951          878 QYITLINGMCRVGNFQGAFKLKDEMEALGI--SSSDVAESAMVRGLAHCGKVEEAMLVLNRMLRMRLVP--TIATFTTLI  953 (1211)
Q Consensus       878 ~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~p--~~~~~~~L~  953 (1211)
                      ++..++..+...|++++|.+.|+++.+...  +....++..++.++.+.|++++|.+.|++++...|..  ...++..++
T Consensus         4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~   83 (119)
T TIGR02795         4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG   83 (119)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence            455666666677777777777777764421  1113455666777777777777777777777654331  245666777


Q ss_pred             HHhhhhCCHHHHHHHHHHHHhcCCCCch
Q 000951          954 HKFCKEAKFVDALKLKGTMELSGVKLDV  981 (1211)
Q Consensus       954 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~  981 (1211)
                      .++.+.|++++|...++.....  .|+.
T Consensus        84 ~~~~~~~~~~~A~~~~~~~~~~--~p~~  109 (119)
T TIGR02795        84 MSLQELGDKEKAKATLQQVIKR--YPGS  109 (119)
T ss_pred             HHHHHhCChHHHHHHHHHHHHH--CcCC
Confidence            7777777777777776665554  4543

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=97.79  E-value=4.1e-05  Score=65.82  Aligned_cols=78  Identities=19%  Similarity=0.239  Sum_probs=36.2

Q ss_pred             CCHHHHHHHHHHHHhCCcc-cCHHHHHHHHHHhhhhCCHHHHHHHHHHHHhcCCCCch-HHHHHHHHHHHhCCChhHHHH
Q 000951          925 GKVEEAMLVLNRMLRMRLV-PTIATFTTLIHKFCKEAKFVDALKLKGTMELSGVKLDV-VSYNVLISGLCANGDVMPAFE 1002 (1211)
Q Consensus       925 g~~~eA~~~~~~~~~~~~~-p~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~ 1002 (1211)
                      |++++|+.+++++++..+. |+...|..++.+|.+.|++++|+.+++. .  ...|+. .....++.+|...|++++|++
T Consensus         3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~--~~~~~~~~~~~l~a~~~~~l~~y~eAi~   79 (84)
T PF12895_consen    3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-L--KLDPSNPDIHYLLARCLLKLGKYEEAIK   79 (84)
T ss_dssp             T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-H--THHHCHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred             ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-h--CCCCCCHHHHHHHHHHHHHhCCHHHHHH
Confidence            4455555555555554432 1334444455555555555555555443 1  113322 233344445555555555555


Q ss_pred             HHH
Q 000951         1003 LYE 1005 (1211)
Q Consensus      1003 ~~~ 1005 (1211)
                      +++
T Consensus        80 ~l~   82 (84)
T PF12895_consen   80 ALE   82 (84)
T ss_dssp             HHH
T ss_pred             HHh
Confidence            554

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=97.78  E-value=4.9e-05  Score=65.32  Aligned_cols=81  Identities=21%  Similarity=0.262  Sum_probs=51.7

Q ss_pred             cCChhhHHHHHHHHHHcCC-CCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCcccCHHHHHHHHHHhhhhCCHHHHHH
Q 000951          889 VGNFQGAFKLKDEMEALGI-SSSDVAESAMVRGLAHCGKVEEAMLVLNRMLRMRLVPTIATFTTLIHKFCKEAKFVDALK  967 (1211)
Q Consensus       889 ~g~~~eA~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~p~~~~~~~L~~~~~~~g~~~~A~~  967 (1211)
                      +|++++|+.+|+++.+... .++...+..++.+|.+.|++++|+.++++ .+.++. +......++.++.+.|++++|++
T Consensus         2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~-~~~~~~l~a~~~~~l~~y~eAi~   79 (84)
T PF12895_consen    2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPS-NPDIHYLLARCLLKLGKYEEAIK   79 (84)
T ss_dssp             TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHC-HHHHHHHHHHHHHHTT-HHHHHH
T ss_pred             CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCC-CHHHHHHHHHHHHHhCCHHHHHH
Confidence            4677777777777765432 12455566677777777777777777777 433332 44555566777778888888877


Q ss_pred             HHHH
Q 000951          968 LKGT  971 (1211)
Q Consensus       968 ~~~~  971 (1211)
                      +++.
T Consensus        80 ~l~~   83 (84)
T PF12895_consen   80 ALEK   83 (84)
T ss_dssp             HHHH
T ss_pred             HHhc
Confidence            7653

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=97.75  E-value=0.0001  Score=59.70  Aligned_cols=62  Identities=16%  Similarity=0.183  Sum_probs=43.4

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhCCcccCHHHHHHHHHHhhhhCCHHHHHHHHHHHHhcCCCCch
Q 000951          917 MVRGLAHCGKVEEAMLVLNRMLRMRLVPTIATFTTLIHKFCKEAKFVDALKLKGTMELSGVKLDV  981 (1211)
Q Consensus       917 l~~~~~~~g~~~eA~~~~~~~~~~~~~p~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~p~~  981 (1211)
                      ++..+...|++++|+..|+++++..|. +..+|..++.++...|++++|+..|+.....  .|++
T Consensus         3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~--~P~~   64 (65)
T PF13432_consen    3 LARALYQQGDYDEAIAAFEQALKQDPD-NPEAWYLLGRILYQQGRYDEALAYYERALEL--DPDN   64 (65)
T ss_dssp             HHHHHHHCTHHHHHHHHHHHHHCCSTT-HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH--STT-
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCC
Confidence            456677777777777777777777655 7777777777777777777777777766554  5653

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=97.74  E-value=0.00056  Score=76.22  Aligned_cols=122  Identities=14%  Similarity=0.097  Sum_probs=102.6

Q ss_pred             HHHHHHHHHhcCChhhHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCcccCHHHHHHHHHHhhh
Q 000951          879 YITLINGMCRVGNFQGAFKLKDEMEALGISSSDVAESAMVRGLAHCGKVEEAMLVLNRMLRMRLVPTIATFTTLIHKFCK  958 (1211)
Q Consensus       879 ~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~p~~~~~~~L~~~~~~  958 (1211)
                      -..|+..+...+++++|+.+++++.+..  |.  +...++.++...++-.+|+++++++++..|. +...+...+..|..
T Consensus       172 v~~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~-d~~LL~~Qa~fLl~  246 (395)
T PF09295_consen  172 VDTLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKENPQ-DSELLNLQAEFLLS  246 (395)
T ss_pred             HHHHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHh
Confidence            4456667777889999999999998653  43  4556788888889999999999999987766 88888888999999


Q ss_pred             hCCHHHHHHHHHHHHhcCCCCchH-HHHHHHHHHHhCCChhHHHHHHHHH
Q 000951          959 EAKFVDALKLKGTMELSGVKLDVV-SYNVLISGLCANGDVMPAFELYEEM 1007 (1211)
Q Consensus       959 ~g~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~ 1007 (1211)
                      .|+++.|+.+.+.....  .|+.. +|..|+.+|...|+|++|+.....+
T Consensus       247 k~~~~lAL~iAk~av~l--sP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~  294 (395)
T PF09295_consen  247 KKKYELALEIAKKAVEL--SPSEFETWYQLAECYIQLGDFENALLALNSC  294 (395)
T ss_pred             cCCHHHHHHHHHHHHHh--CchhHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence            99999999997766655  89655 9999999999999999999887754

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=97.73  E-value=0.0003  Score=62.12  Aligned_cols=95  Identities=17%  Similarity=0.201  Sum_probs=55.3

Q ss_pred             HHHHHHHHHhhcchhhHHHHHHHHHHcCCCCCh-hHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCchHHHHHHHHHHH
Q 000951          844 QDAIIMGLKRIAAFQESHFVLRGMAEKGLTPKC-TQYITLINGMCRVGNFQGAFKLKDEMEALGISSSDVAESAMVRGLA  922 (1211)
Q Consensus       844 ~~~l~~~~~~~g~~~eA~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~  922 (1211)
                      +..++..+...|++++|+..++++++  ..|+. ..+..++.++...|++++|.+.++.+.... +.+...+..++.++.
T Consensus         3 ~~~~a~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~   79 (100)
T cd00189           3 LLNLGNLYYKLGDYDEALEYYEKALE--LDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYY   79 (100)
T ss_pred             HHHHHHHHHHHhcHHHHHHHHHHHHh--cCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHH
Confidence            34445555555666666666666555  44432 455556666666666666666666665542 333445666666666


Q ss_pred             hcCCHHHHHHHHHHHHhCC
Q 000951          923 HCGKVEEAMLVLNRMLRMR  941 (1211)
Q Consensus       923 ~~g~~~eA~~~~~~~~~~~  941 (1211)
                      ..|++++|...++++++..
T Consensus        80 ~~~~~~~a~~~~~~~~~~~   98 (100)
T cd00189          80 KLGKYEEALEAYEKALELD   98 (100)
T ss_pred             HHHhHHHHHHHHHHHHccC
Confidence            6666777776666665543

>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif)

Probab=97.72  E-value=4.7e-05  Score=52.54  Aligned_cols=33  Identities=48%  Similarity=0.837  Sum_probs=23.1

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcC
Q 000951          317 TYNELIDGHCCKGNFKEAFRLLAMMEEMGLRPN  349 (1211)
Q Consensus       317 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~  349 (1211)
                      +||++|.+|++.|++++|.++|++|.+.|+.||
T Consensus         2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~   34 (35)
T TIGR00756         2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD   34 (35)
T ss_pred             cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence            567777777777777777777777777776665

This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.

>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif)

Probab=97.72  E-value=4.7e-05  Score=52.55  Aligned_cols=33  Identities=48%  Similarity=0.814  Sum_probs=19.9

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCC
Q 000951          212 TYNTLLNWYCKKGRYKAAFKLIDCMASKGIEAD  244 (1211)
Q Consensus       212 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~  244 (1211)
                      +||++|++|++.|++++|.++|++|.+.|+.||
T Consensus         2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~   34 (35)
T TIGR00756         2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD   34 (35)
T ss_pred             cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence            456666666666666666666666666655554

This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=97.71  E-value=0.001  Score=77.94  Aligned_cols=124  Identities=10%  Similarity=-0.014  Sum_probs=73.1

Q ss_pred             hhhHHHHHHHHHHcCCCCCh-hHHHHHHHHHHhcC--------ChhhHHHHHHHHHHcC-CCCchHHHHHHHHHHHhcCC
Q 000951          857 FQESHFVLRGMAEKGLTPKC-TQYITLINGMCRVG--------NFQGAFKLKDEMEALG-ISSSDVAESAMVRGLAHCGK  926 (1211)
Q Consensus       857 ~~eA~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g--------~~~eA~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~  926 (1211)
                      ..+|+.+|+++++  .+|+. ..|..++.++....        +++.+.+..+++.... .+.++.++..++......|+
T Consensus       358 ~~~A~~lle~Ai~--ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~  435 (517)
T PRK10153        358 LNKASDLLEEILK--SEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELNVLPRIYEILAVQALVKGK  435 (517)
T ss_pred             HHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCC
Confidence            5566777777776  66664 34444443333221        2233344444433321 23344566666666666777


Q ss_pred             HHHHHHHHHHHHhCCcccCHHHHHHHHHHhhhhCCHHHHHHHHHHHHhcCCCCchHHHHH
Q 000951          927 VEEAMLVLNRMLRMRLVPTIATFTTLIHKFCKEAKFVDALKLKGTMELSGVKLDVVSYNV  986 (1211)
Q Consensus       927 ~~eA~~~~~~~~~~~~~p~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~  986 (1211)
                      +++|...++++++.+  |+...|..+|..+...|+.++|.+.|+....+  +|...+|+.
T Consensus       436 ~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L--~P~~pt~~~  491 (517)
T PRK10153        436 TDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFNL--RPGENTLYW  491 (517)
T ss_pred             HHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCchHHH
Confidence            777777777777766  45667777777777777777777776654443  666555543

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=97.70  E-value=0.0012  Score=60.13  Aligned_cols=93  Identities=17%  Similarity=0.187  Sum_probs=53.0

Q ss_pred             HHHHHHHHhhcchhhHHHHHHHHHHcCCCCCh--hHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCC---chHHHHHHHH
Q 000951          845 DAIIMGLKRIAAFQESHFVLRGMAEKGLTPKC--TQYITLINGMCRVGNFQGAFKLKDEMEALGISS---SDVAESAMVR  919 (1211)
Q Consensus       845 ~~l~~~~~~~g~~~eA~~~~~~~~~~g~~p~~--~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~---~~~~~~~l~~  919 (1211)
                      ..++.++...|+.++|+.+|++.+..|..+..  ..+..++..+...|++++|+.++++.... .+.   +......++.
T Consensus         5 ~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~-~p~~~~~~~l~~f~Al   83 (120)
T PF12688_consen    5 YELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEE-FPDDELNAALRVFLAL   83 (120)
T ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-CCCccccHHHHHHHHH
Confidence            34555666666666666666666665555432  55666666666666666666666666543 122   2223333445


Q ss_pred             HHHhcCCHHHHHHHHHHHH
Q 000951          920 GLAHCGKVEEAMLVLNRML  938 (1211)
Q Consensus       920 ~~~~~g~~~eA~~~~~~~~  938 (1211)
                      ++...|+.++|+..+-..+
T Consensus        84 ~L~~~gr~~eAl~~~l~~l  102 (120)
T PF12688_consen   84 ALYNLGRPKEALEWLLEAL  102 (120)
T ss_pred             HHHHCCCHHHHHHHHHHHH
Confidence            5566666666666554443

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=97.68  E-value=0.0011  Score=68.83  Aligned_cols=102  Identities=12%  Similarity=0.068  Sum_probs=57.7

Q ss_pred             CCCC-hhHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCC---HHHHHHHHHHHHhCCcccCHH
Q 000951          872 LTPK-CTQYITLINGMCRVGNFQGAFKLKDEMEALGISSSDVAESAMVRGLAHCGK---VEEAMLVLNRMLRMRLVPTIA  947 (1211)
Q Consensus       872 ~~p~-~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~eA~~~~~~~~~~~~~p~~~  947 (1211)
                      .+|+ ...|..|+.+|...|++..|...|.++.+. -++++.++..++.++..+..   ..++.++|++++..++. |..
T Consensus       151 ~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL-~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~-~ir  228 (287)
T COG4235         151 QNPGDAEGWDLLGRAYMALGRASDALLAYRNALRL-AGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPA-NIR  228 (287)
T ss_pred             hCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCc-cHH
Confidence            4453 355666666666666666666666666554 24555555555554433211   45566666666666554 666


Q ss_pred             HHHHHHHHhhhhCCHHHHHHHHHHHHhc
Q 000951          948 TFTTLIHKFCKEAKFVDALKLKGTMELS  975 (1211)
Q Consensus       948 ~~~~L~~~~~~~g~~~~A~~~~~~~~~~  975 (1211)
                      +...|+..+...|++.+|...++.|...
T Consensus       229 al~lLA~~afe~g~~~~A~~~Wq~lL~~  256 (287)
T COG4235         229 ALSLLAFAAFEQGDYAEAAAAWQMLLDL  256 (287)
T ss_pred             HHHHHHHHHHHcccHHHHHHHHHHHHhc
Confidence            6666666666666666666666655544

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=97.68  E-value=0.00052  Score=68.40  Aligned_cols=114  Identities=11%  Similarity=-0.014  Sum_probs=84.0

Q ss_pred             hhhHHHHHHHHH-HcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCccc--CHHHHHHHHHHhhhhCCHHHHHHH
Q 000951          892 FQGAFKLKDEME-ALGISSSDVAESAMVRGLAHCGKVEEAMLVLNRMLRMRLVP--TIATFTTLIHKFCKEAKFVDALKL  968 (1211)
Q Consensus       892 ~~eA~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~p--~~~~~~~L~~~~~~~g~~~~A~~~  968 (1211)
                      +..+...+..+. ..+.......+..++..+...|++++|+..|++++...+.|  .+.+|..++.++...|++++|+..
T Consensus        15 ~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~   94 (168)
T CHL00033         15 FTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEY   94 (168)
T ss_pred             cccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHH
Confidence            444445554443 22222334567788889999999999999999999876543  346899999999999999999999


Q ss_pred             HHHHHhcCCCCchH-HHHHHHHHHH-------hCCChhHHHHHHHHH
Q 000951          969 KGTMELSGVKLDVV-SYNVLISGLC-------ANGDVMPAFELYEEM 1007 (1211)
Q Consensus       969 ~~~~~~~~~~p~~~-~~~~l~~~~~-------~~g~~~~a~~~~~~~ 1007 (1211)
                      ++.....  .|+.. .+..++.+|.       ..|+++.|...+++.
T Consensus        95 ~~~Al~~--~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a  139 (168)
T CHL00033         95 YFQALER--NPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQA  139 (168)
T ss_pred             HHHHHHh--CcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHH
Confidence            8876654  67544 6777777777       888888776666543

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=97.66  E-value=0.00013  Score=59.87  Aligned_cols=63  Identities=13%  Similarity=0.068  Sum_probs=36.9

Q ss_pred             hHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCcccCHHHHHHHHHHhhhhC-CHHHHHHHHHHHHh
Q 000951          911 DVAESAMVRGLAHCGKVEEAMLVLNRMLRMRLVPTIATFTTLIHKFCKEA-KFVDALKLKGTMEL  974 (1211)
Q Consensus       911 ~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~p~~~~~~~L~~~~~~~g-~~~~A~~~~~~~~~  974 (1211)
                      +.+|..++..+...|++++|+..|+++++.+|. ++.+|..++.+|...| ++++|++.++...+
T Consensus         3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~-~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~   66 (69)
T PF13414_consen    3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPN-NAEAYYNLGLAYMKLGKDYEEAIEDFEKALK   66 (69)
T ss_dssp             HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence            345555566666666666666666666665544 5556666666666666 46666665554443

...

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=97.64  E-value=0.00098  Score=69.52  Aligned_cols=32  Identities=22%  Similarity=0.296  Sum_probs=22.5

Q ss_pred             hhcCcchhhhhHHHHhhccccceeecCcccchHHHHH
Q 000951         1141 KLFCPCCLLHYLLKLIYQGSKQRVIIGPAVSLEEVMK 1177 (1211)
Q Consensus      1141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1177 (1211)
                      -|.|+.|  .   |++|.+..--.+-...+.+|+...
T Consensus       405 ~rsCP~C--r---klrSs~~rpgfvgs~~Vesest~~  436 (518)
T KOG1941|consen  405 TRSCPNC--R---KLRSSMKRPGFVGSVPVESESTDR  436 (518)
T ss_pred             CCCCccH--H---HHHhhccCCCCcCCCccccccccc
Confidence            5899999  3   899977655566666666666543

>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length

Probab=97.63  E-value=0.16  Score=55.59  Aligned_cols=183  Identities=13%  Similarity=0.138  Sum_probs=87.5

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhC----CCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHH---CCCCCCHHHHHH
Q 000951          388 YTSVIDGLCKCGLLDEAMQLFNKMFKD----GLNPDLITFSVLINGFCKVGMTRKAKAVLCKMYR---DGLVPNKIIYST  460 (1211)
Q Consensus       388 ~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~g~~p~~~~~~~  460 (1211)
                      -+..++.+...|++.++..+++++..+    ....++.+||.++-.+.+.        .|-++.+   ..+-|+   |.-
T Consensus       131 ~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~vlmlsrS--------YfLEl~e~~s~dl~pd---yYe  199 (549)
T PF07079_consen  131 DEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRAVLMLSRS--------YFLELKESMSSDLYPD---YYE  199 (549)
T ss_pred             HHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHhHH--------HHHHHHHhcccccChH---HHH
Confidence            355677788888888888888777654    2336777787755554432        2333322   223332   333


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCC--C---hHHHHHHHHHHHhcCCCCCHH-HHHHHHHH
Q 000951          461 LIYYFCKMGKVTEAMKVYAVMNRNAQGSDHFTCNMLVASLCKGG--K---VCEAEDYVGHMKRIGVVPNSI-TFDCMIDG  534 (1211)
Q Consensus       461 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g--~---~~~A~~~~~~~~~~g~~p~~~-~~~~li~~  534 (1211)
                      ++..|.+.=..-++.      .-..+.|.......++....-.-  +   +-.+.+.+   ...-+.|+.. ....++..
T Consensus       200 milfY~kki~~~d~~------~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l~~W---e~~yv~p~~~LVi~~L~~~  270 (549)
T PF07079_consen  200 MILFYLKKIHAFDQR------PYEKFIPEEELFSTIMQHLFIVPKERLPPLMQILENW---ENFYVHPNYDLVIEPLKQQ  270 (549)
T ss_pred             HHHHHHHHHHHHhhc------hHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHHHHH---HhhccCCchhHHHHHHHHH
Confidence            444443321111110      00011122222222222221111  1   11222222   2222344432 33444444


Q ss_pred             HHhcCCHHHHHHHHHHHHHCCCCC----CHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCC
Q 000951          535 YGTLGDGLKAFSMFDEMVKLGHHP----SIFTYGSLLKGLCKGGNLKEAKRFLNSLHHIPSA  592 (1211)
Q Consensus       535 ~~~~g~~~~A~~~~~~m~~~~~~p----~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~  592 (1211)
                      +.+  +.+++..+.+.+....+.+    =..++..++....+.++...|.+.+.-+.-..|.
T Consensus       271 f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~ldp~  330 (549)
T PF07079_consen  271 FMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKILDPR  330 (549)
T ss_pred             Hhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcCCc
Confidence            444  4555555554444322111    1356777788888888888888888877766554

Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=97.62  E-value=0.0015  Score=59.50  Aligned_cols=91  Identities=20%  Similarity=0.131  Sum_probs=61.4

Q ss_pred             HHHHHHHHHhcCChhhHHHHHHHHHHcCCCCc--hHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCccc--CHHHHHHHHH
Q 000951          879 YITLINGMCRVGNFQGAFKLKDEMEALGISSS--DVAESAMVRGLAHCGKVEEAMLVLNRMLRMRLVP--TIATFTTLIH  954 (1211)
Q Consensus       879 ~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~p--~~~~~~~L~~  954 (1211)
                      ...++.++-..|+.++|+.+|+++++.|.+..  ...+-.++..+...|++++|+.++++.++..|.+  +......++.
T Consensus         4 ~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al   83 (120)
T PF12688_consen    4 LYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLAL   83 (120)
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHH
Confidence            44566777777888888888888877665543  3355567777778888888888888777654331  2233344556


Q ss_pred             HhhhhCCHHHHHHHH
Q 000951          955 KFCKEAKFVDALKLK  969 (1211)
Q Consensus       955 ~~~~~g~~~~A~~~~  969 (1211)
                      ++...|+.++|+..+
T Consensus        84 ~L~~~gr~~eAl~~~   98 (120)
T PF12688_consen   84 ALYNLGRPKEALEWL   98 (120)
T ss_pred             HHHHCCCHHHHHHHH
Confidence            777778888887764

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=97.61  E-value=0.0099  Score=56.38  Aligned_cols=125  Identities=12%  Similarity=0.126  Sum_probs=59.6

Q ss_pred             ChhhHHHHHHHHHhhcchhhHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChhhHHHHHHHHHHcC---CCCchHHHHH
Q 000951          840 DTNTQDAIIMGLKRIAAFQESHFVLRGMAEKGLTPKCTQYITLINGMCRVGNFQGAFKLKDEMEALG---ISSSDVAESA  916 (1211)
Q Consensus       840 ~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~---~~~~~~~~~~  916 (1211)
                      .+.....|+.+....|++.||...|++.+.--+.-|......++++....+++.+|...++.+.+.+   -+||  ..-.
T Consensus        88 Tvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd--~~Ll  165 (251)
T COG4700          88 TVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPD--GHLL  165 (251)
T ss_pred             hHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCC--chHH
Confidence            3333444455555555555555555555441122234445555555555555555555555554432   1111  1223


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhCCcccCHHHHHHHHHHhhhhCCHHHHHHH
Q 000951          917 MVRGLAHCGKVEEAMLVLNRMLRMRLVPTIATFTTLIHKFCKEAKFVDALKL  968 (1211)
Q Consensus       917 l~~~~~~~g~~~eA~~~~~~~~~~~~~p~~~~~~~L~~~~~~~g~~~~A~~~  968 (1211)
                      ++..|...|++.+|...|+.++..-|.|  ..-...+..+.++|+..+|..-
T Consensus       166 ~aR~laa~g~~a~Aesafe~a~~~ypg~--~ar~~Y~e~La~qgr~~ea~aq  215 (251)
T COG4700         166 FARTLAAQGKYADAESAFEVAISYYPGP--QARIYYAEMLAKQGRLREANAQ  215 (251)
T ss_pred             HHHHHHhcCCchhHHHHHHHHHHhCCCH--HHHHHHHHHHHHhcchhHHHHH
Confidence            3455555566666666666665544322  2222234455556655555443

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=97.53  E-value=0.0028  Score=65.94  Aligned_cols=120  Identities=15%  Similarity=0.115  Sum_probs=96.4

Q ss_pred             HHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCcccCHHHHHHHHHHhhhhC---CHHHHHHHHHHHHhc
Q 000951          899 KDEMEALGISSSDVAESAMVRGLAHCGKVEEAMLVLNRMLRMRLVPTIATFTTLIHKFCKEA---KFVDALKLKGTMELS  975 (1211)
Q Consensus       899 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~p~~~~~~~L~~~~~~~g---~~~~A~~~~~~~~~~  975 (1211)
                      .+.-+.. .|.|..-|..|+.+|...|+...|...|.++.+..++ |+..+..++.++..+.   ...+|..++++....
T Consensus       145 Le~~L~~-nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~-n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~  222 (287)
T COG4235         145 LETHLQQ-NPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGD-NPEILLGLAEALYYQAGQQMTAKARALLRQALAL  222 (287)
T ss_pred             HHHHHHh-CCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhc
Confidence            3333433 4788999999999999999999999999999999876 9999999998876653   467888898877766


Q ss_pred             CCCCchH-HHHHHHHHHHhCCChhHHHHHHHHHHHcCCccChhhHHHHHH
Q 000951          976 GVKLDVV-SYNVLISGLCANGDVMPAFELYEEMKHKGLCPNSTTYSVLID 1024 (1211)
Q Consensus       976 ~~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~l~~ 1024 (1211)
                        +|++. +...|+..+...|++.+|...++.|.+  +.|....|..++.
T Consensus       223 --D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~--~lp~~~~rr~~ie  268 (287)
T COG4235         223 --DPANIRALSLLAFAAFEQGDYAEAAAAWQMLLD--LLPADDPRRSLIE  268 (287)
T ss_pred             --CCccHHHHHHHHHHHHHcccHHHHHHHHHHHHh--cCCCCCchHHHHH
Confidence              88655 788888899999999999999999977  3444444544443

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=97.50  E-value=0.02  Score=60.15  Aligned_cols=126  Identities=9%  Similarity=0.059  Sum_probs=68.3

Q ss_pred             HHHHHHHHhhcchhhHHHHHHHHHHcCC---CCC--hhHHHHHHHHHHhcCChhhHHHHHHHHHHc--CCCCc-------
Q 000951          845 DAIIMGLKRIAAFQESHFVLRGMAEKGL---TPK--CTQYITLINGMCRVGNFQGAFKLKDEMEAL--GISSS-------  910 (1211)
Q Consensus       845 ~~l~~~~~~~g~~~eA~~~~~~~~~~g~---~p~--~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~--~~~~~-------  910 (1211)
                      ..+..+....+.++++++.|+.+.+...   +|-  ...+..|+..+.+..++++|+-+..++.+.  ....+       
T Consensus       126 l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr  205 (518)
T KOG1941|consen  126 LSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYR  205 (518)
T ss_pred             hhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHH
Confidence            3455555556666666666666654211   111  155666666666666666666666555422  11111       


Q ss_pred             hHHHHHHHHHHHhcCCHHHHHHHHHHHHh----CCccc-CHHHHHHHHHHhhhhCCHHHHHHHHH
Q 000951          911 DVAESAMVRGLAHCGKVEEAMLVLNRMLR----MRLVP-TIATFTTLIHKFCKEAKFVDALKLKG  970 (1211)
Q Consensus       911 ~~~~~~l~~~~~~~g~~~eA~~~~~~~~~----~~~~p-~~~~~~~L~~~~~~~g~~~~A~~~~~  970 (1211)
                      ..+.+.|..++...|++-.|.+.-+++.+    +|-.| .......++++|+..|+.+.|..-|+
T Consensus       206 ~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe  270 (518)
T KOG1941|consen  206 AMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYE  270 (518)
T ss_pred             HHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHH
Confidence            11344556666666666666555555433    33222 33455667777777777766665544

>PF13812 PPR_3: Pentatricopeptide repeat domain

Probab=97.50  E-value=0.00016  Score=49.40  Aligned_cols=32  Identities=41%  Similarity=0.601  Sum_probs=17.5

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHhCCCCC
Q 000951          212 TYNTLLNWYCKKGRYKAAFKLIDCMASKGIEA  243 (1211)
Q Consensus       212 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~  243 (1211)
                      +|+.++.+|++.|+++.|.++|++|.+.|++|
T Consensus         3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P   34 (34)
T PF13812_consen    3 TYNALLRACAKAGDPDAALQLFDEMKEQGVKP   34 (34)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence            45555555555555555555555555555544

>PF13812 PPR_3: Pentatricopeptide repeat domain

Probab=97.48  E-value=0.00017  Score=49.23  Aligned_cols=32  Identities=34%  Similarity=0.615  Sum_probs=16.5

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCc
Q 000951          317 TYNELIDGHCCKGNFKEAFRLLAMMEEMGLRP  348 (1211)
Q Consensus       317 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p  348 (1211)
                      +||.+|.+|++.|+++.|.++|++|.+.|++|
T Consensus         3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P   34 (34)
T PF13812_consen    3 TYNALLRACAKAGDPDAALQLFDEMKEQGVKP   34 (34)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence            45555555555555555555555555555444

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=97.48  E-value=0.00037  Score=57.25  Aligned_cols=63  Identities=16%  Similarity=0.210  Sum_probs=33.2

Q ss_pred             HHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCchHHHHHHHHHHHhcC-CHHHHHHHHHHHHhCC
Q 000951          878 QYITLINGMCRVGNFQGAFKLKDEMEALGISSSDVAESAMVRGLAHCG-KVEEAMLVLNRMLRMR  941 (1211)
Q Consensus       878 ~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~eA~~~~~~~~~~~  941 (1211)
                      +|..++..+...|++++|+..|+++++.. +.+..++..++.++...| ++++|++.++++++.+
T Consensus         5 ~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~   68 (69)
T PF13414_consen    5 AWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLD   68 (69)
T ss_dssp             HHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcC
Confidence            34445555555555555555555555442 334445555555555555 4555555555555543

...

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=97.43  E-value=0.0062  Score=71.51  Aligned_cols=84  Identities=12%  Similarity=-0.047  Sum_probs=63.6

Q ss_pred             hhHHHHHHHHHHcCCCC-ChhHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHH
Q 000951          858 QESHFVLRGMAEKGLTP-KCTQYITLINGMCRVGNFQGAFKLKDEMEALGISSSDVAESAMVRGLAHCGKVEEAMLVLNR  936 (1211)
Q Consensus       858 ~eA~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~  936 (1211)
                      .++.....+.......| +...|..++-.....|++++|...++++++.+  |+...|..++..+...|+.++|.+.|++
T Consensus       401 ~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~  478 (517)
T PRK10153        401 AALSTELDNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYST  478 (517)
T ss_pred             HHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            34444455544422233 34667777777778899999999999998874  5778888999999999999999999999


Q ss_pred             HHhCCcc
Q 000951          937 MLRMRLV  943 (1211)
Q Consensus       937 ~~~~~~~  943 (1211)
                      +++++|.
T Consensus       479 A~~L~P~  485 (517)
T PRK10153        479 AFNLRPG  485 (517)
T ss_pred             HHhcCCC
Confidence            9998765

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=97.38  E-value=0.0006  Score=55.13  Aligned_cols=60  Identities=18%  Similarity=0.220  Sum_probs=38.5

Q ss_pred             HHHHHHhcCChhhHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCc
Q 000951          882 LINGMCRVGNFQGAFKLKDEMEALGISSSDVAESAMVRGLAHCGKVEEAMLVLNRMLRMRL  942 (1211)
Q Consensus       882 l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~  942 (1211)
                      ++..+...|++++|.+.|+++++.. +.+..++..++.++...|++++|+..|+++++..|
T Consensus         3 ~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P   62 (65)
T PF13432_consen    3 LARALYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERALELDP   62 (65)
T ss_dssp             HHHHHHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence            4555666666777777776666553 44566666777777777777777777777766543

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=97.37  E-value=0.00046  Score=56.46  Aligned_cols=60  Identities=18%  Similarity=0.209  Sum_probs=38.2

Q ss_pred             hcCCHHHHHHHHHHHHhCCcccCHHHHHHHHHHhhhhCCHHHHHHHHHHHHhcCCCCchHHHH
Q 000951          923 HCGKVEEAMLVLNRMLRMRLVPTIATFTTLIHKFCKEAKFVDALKLKGTMELSGVKLDVVSYN  985 (1211)
Q Consensus       923 ~~g~~~eA~~~~~~~~~~~~~p~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~  985 (1211)
                      ..|++++|++.|+++++..|. +..++..++.+|.+.|++++|..+++.+...  .|+...|.
T Consensus         3 ~~~~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~--~~~~~~~~   62 (68)
T PF14559_consen    3 KQGDYDEAIELLEKALQRNPD-NPEARLLLAQCYLKQGQYDEAEELLERLLKQ--DPDNPEYQ   62 (68)
T ss_dssp             HTTHHHHHHHHHHHHHHHTTT-SHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG--GTTHHHHH
T ss_pred             hccCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCHHHHH
Confidence            456677777777777766655 6666667777777777777777776655544  56544443

...

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.33  E-value=0.042  Score=55.30  Aligned_cols=150  Identities=13%  Similarity=-0.010  Sum_probs=107.0

Q ss_pred             HHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhcchhhHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChhhHHHHHHHH
Q 000951          823 GKAFDLFNIMNMLGVVPDTNTQDAIIMGLKRIAAFQESHFVLRGMAEKGLTPKCTQYITLINGMCRVGNFQGAFKLKDEM  902 (1211)
Q Consensus       823 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~eA~~~~~~~  902 (1211)
                      +-.++.|++=.       ....+.++..+.-+|.+.-...++.+.++....-++.....|+..-.+.|+.+.|..+|+++
T Consensus       166 ESsv~lW~KRl-------~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~v  238 (366)
T KOG2796|consen  166 ESSIRLWRKRL-------GRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDV  238 (366)
T ss_pred             hhHHHHHHHHH-------HHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence            44555555433       23345666666677777778888888877332225577778888888888888888888877


Q ss_pred             HHcC-----CCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCcccCHHHHHHHHHHhhhhCCHHHHHHHHHHHHhcCC
Q 000951          903 EALG-----ISSSDVAESAMVRGLAHCGKVEEAMLVLNRMLRMRLVPTIATFTTLIHKFCKEAKFVDALKLKGTMELSGV  977 (1211)
Q Consensus       903 ~~~~-----~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~p~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~  977 (1211)
                      .+..     ..-...+...+..++..+.++.+|...|.++++.++. |+..-++-+-++.-.|+..+|++..+++...  
T Consensus       239 ek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~-~~~a~NnKALcllYlg~l~DAiK~~e~~~~~--  315 (366)
T KOG2796|consen  239 EKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPR-NAVANNNKALCLLYLGKLKDALKQLEAMVQQ--  315 (366)
T ss_pred             HHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCC-chhhhchHHHHHHHHHHHHHHHHHHHHHhcc--
Confidence            5322     2222333445556677788899999999999998876 8888888888888889999999998888866  


Q ss_pred             CCchH
Q 000951          978 KLDVV  982 (1211)
Q Consensus       978 ~p~~~  982 (1211)
                      .|.+.
T Consensus       316 ~P~~~  320 (366)
T KOG2796|consen  316 DPRHY  320 (366)
T ss_pred             CCccc
Confidence            66444

>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat

Probab=97.30  E-value=0.00027  Score=47.01  Aligned_cols=29  Identities=48%  Similarity=0.840  Sum_probs=15.4

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 000951          317 TYNELIDGHCCKGNFKEAFRLLAMMEEMG  345 (1211)
Q Consensus       317 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g  345 (1211)
                      +||++|++|++.|++++|.++|++|.+.|
T Consensus         2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g   30 (31)
T PF01535_consen    2 TYNSLISGYCKMGQFEEALEVFDEMRERG   30 (31)
T ss_pred             cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence            45555555555555555555555555444

Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=97.28  E-value=0.063  Score=56.64  Aligned_cols=55  Identities=13%  Similarity=0.042  Sum_probs=35.4

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhCCccc--CHHHHHHHHHHhhhhCCHHHHHHHHH
Q 000951          916 AMVRGLAHCGKVEEAMLVLNRMLRMRLVP--TIATFTTLIHKFCKEAKFVDALKLKG  970 (1211)
Q Consensus       916 ~l~~~~~~~g~~~eA~~~~~~~~~~~~~p--~~~~~~~L~~~~~~~g~~~~A~~~~~  970 (1211)
                      .++..|.+.|.+.-|+.-++.+++.-|.-  ...++..++.+|...|..++|.+...
T Consensus       180 ~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~  236 (243)
T PRK10866        180 SVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAK  236 (243)
T ss_pred             HHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHH
Confidence            44566777777777777777777654321  34556666677777777777766544

>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat

Probab=97.27  E-value=0.00029  Score=46.91  Aligned_cols=29  Identities=41%  Similarity=0.897  Sum_probs=16.1

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHhCC
Q 000951          212 TYNTLLNWYCKKGRYKAAFKLIDCMASKG  240 (1211)
Q Consensus       212 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g  240 (1211)
                      +||++|++|++.|++++|.++|++|.+.|
T Consensus         2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g   30 (31)
T PF01535_consen    2 TYNSLISGYCKMGQFEEALEVFDEMRERG   30 (31)
T ss_pred             cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence            45555555555555555555555555544

Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.

>PRK15331 chaperone protein SicA; Provisional

Probab=97.27  E-value=0.012  Score=55.79  Aligned_cols=94  Identities=12%  Similarity=-0.049  Sum_probs=78.1

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhCCcccCHHHHHHHHHHhhhhCCHHHHHHHHHHHHhcCCCC-chHHHHHHHHHH
Q 000951          913 AESAMVRGLAHCGKVEEAMLVLNRMLRMRLVPTIATFTTLIHKFCKEAKFVDALKLKGTMELSGVKL-DVVSYNVLISGL  991 (1211)
Q Consensus       913 ~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~p~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~  991 (1211)
                      ..+..+.-+...|++++|..+|+-+.-.++. +..-|..|+.++-..|++++|+..|...-..  .+ |+......+..|
T Consensus        39 ~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~-n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l--~~~dp~p~f~agqC~  115 (165)
T PRK15331         39 GLYAHAYEFYNQGRLDEAETFFRFLCIYDFY-NPDYTMGLAAVCQLKKQFQKACDLYAVAFTL--LKNDYRPVFFTGQCQ  115 (165)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc--ccCCCCccchHHHHH
Confidence            4456677778899999999999988887766 8888999999999999999999998765554  44 455788889999


Q ss_pred             HhCCChhHHHHHHHHHHH
Q 000951          992 CANGDVMPAFELYEEMKH 1009 (1211)
Q Consensus       992 ~~~g~~~~a~~~~~~~~~ 1009 (1211)
                      ...|+.+.|...++...+
T Consensus       116 l~l~~~~~A~~~f~~a~~  133 (165)
T PRK15331        116 LLMRKAAKARQCFELVNE  133 (165)
T ss_pred             HHhCCHHHHHHHHHHHHh
Confidence            999999999999998876

>PRK15331 chaperone protein SicA; Provisional

Probab=97.24  E-value=0.0045  Score=58.59  Aligned_cols=96  Identities=5%  Similarity=-0.173  Sum_probs=70.7

Q ss_pred             hHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCcccCHHHHHHHHHHh
Q 000951          877 TQYITLINGMCRVGNFQGAFKLKDEMEALGISSSDVAESAMVRGLAHCGKVEEAMLVLNRMLRMRLVPTIATFTTLIHKF  956 (1211)
Q Consensus       877 ~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~p~~~~~~~L~~~~  956 (1211)
                      ......+.-+...|++++|..+|.-+.-.+ +-+...|..|+.++...+++++|+.+|..+..+++. |+......+.+|
T Consensus        38 e~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~-dp~p~f~agqC~  115 (165)
T PRK15331         38 DGLYAHAYEFYNQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKN-DYRPVFFTGQCQ  115 (165)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccC-CCCccchHHHHH
Confidence            445556666677888888888888776543 334556677777888888888888888887777655 777777788888


Q ss_pred             hhhCCHHHHHHHHHHHHh
Q 000951          957 CKEAKFVDALKLKGTMEL  974 (1211)
Q Consensus       957 ~~~g~~~~A~~~~~~~~~  974 (1211)
                      ...|+.+.|...|.....
T Consensus       116 l~l~~~~~A~~~f~~a~~  133 (165)
T PRK15331        116 LLMRKAAKARQCFELVNE  133 (165)
T ss_pred             HHhCCHHHHHHHHHHHHh
Confidence            888888888888776554

>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends

Probab=97.23  E-value=0.0051  Score=53.49  Aligned_cols=78  Identities=17%  Similarity=0.289  Sum_probs=49.6

Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhcCC--------hHHHHHHHHHHHHCCCCCCHHHH
Q 000951          213 YNTLLNWYCKKGRYKAAFKLIDCMASKGI-EADVCTYNMFIDDLCRNNR--------SAKGYLLLKNMRKRMITPNEVTY  283 (1211)
Q Consensus       213 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~~~~~~~~~li~~~~~~g~--------~~~A~~~~~~m~~~~~~p~~~~~  283 (1211)
                      ....|..+...+++.....+|+.+++.|+ .|++.+|+.++.+.++..-        .-+.+.+|+.|...+++|+..+|
T Consensus        28 ~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etY  107 (120)
T PF08579_consen   28 QIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETY  107 (120)
T ss_pred             HHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHH
Confidence            34556666677888888888888888888 7888888888877765432        22334444444444455555555


Q ss_pred             HHHHHHH
Q 000951          284 NTLINGF  290 (1211)
Q Consensus       284 ~~li~~~  290 (1211)
                      +.++..+
T Consensus       108 nivl~~L  114 (120)
T PF08579_consen  108 NIVLGSL  114 (120)
T ss_pred             HHHHHHH
Confidence            5444443

Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].

>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=97.22  E-value=0.0041  Score=69.75  Aligned_cols=122  Identities=16%  Similarity=0.155  Sum_probs=68.5

Q ss_pred             CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChHHHH
Q 000951          242 EADVCTYNMFIDDLCRNNRSAKGYLLLKNMRKR--MITPNEVTYNTLINGFVKEGKIQVASRVFDEMSMLNFSPNSITYN  319 (1211)
Q Consensus       242 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~  319 (1211)
                      +.+......+++.+....+.+++..++-..+..  ....-..|..++|..|.+.|..+.++.++..=...|+-||..++|
T Consensus        63 ~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n  142 (429)
T PF10037_consen   63 PVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFN  142 (429)
T ss_pred             CCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHH
Confidence            334444444555555555555555555554433  111112233466666666666666666666666666666666666


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHhHHHHHHHHHHhc
Q 000951          320 ELIDGHCCKGNFKEAFRLLAMMEEMGLRPNEVSYGALLNGFCKH  363 (1211)
Q Consensus       320 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~  363 (1211)
                      .|++.+.+.|++..|.++..+|...+...+..|+...+.+|.+.
T Consensus       143 ~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~  186 (429)
T PF10037_consen  143 LLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY  186 (429)
T ss_pred             HHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence            66666666666666666666666555555555555555555443

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=97.21  E-value=0.37  Score=50.95  Aligned_cols=199  Identities=18%  Similarity=0.138  Sum_probs=104.6

Q ss_pred             hhHHHHHHHHHhcCcHHHHHHHHHHHHHC-CCCCChhhHHHHHHHHHhhcchhhHHHHHHHHHHcCCCCCh-hHHHHHHH
Q 000951          807 FTFNVLMRKCCEAGEMGKAFDLFNIMNML-GVVPDTNTQDAIIMGLKRIAAFQESHFVLRGMAEKGLTPKC-TQYITLIN  884 (1211)
Q Consensus       807 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~g~~p~~-~~~~~l~~  884 (1211)
                      .........+...+.+..+...+...... ........+...+..+...+.+.++...+.....  ..++. ........
T Consensus        60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~  137 (291)
T COG0457          60 GLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALA--LDPDPDLAEALLAL  137 (291)
T ss_pred             HHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHc--CCCCcchHHHHHHH
Confidence            34444555555556666666555555431 1123344455555555555666666666666655  22221 11222222


Q ss_pred             -HHHhcCChhhHHHHHHHHHHcCC--CCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCcccCHHHHHHHHHHhhhhCC
Q 000951          885 -GMCRVGNFQGAFKLKDEMEALGI--SSSDVAESAMVRGLAHCGKVEEAMLVLNRMLRMRLVPTIATFTTLIHKFCKEAK  961 (1211)
Q Consensus       885 -~~~~~g~~~eA~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~p~~~~~~~L~~~~~~~g~  961 (1211)
                       ++...|++++|...|+++.....  ......+......+...+++++|+..+.+++...+......+..++..+...|+
T Consensus       138 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  217 (291)
T COG0457         138 GALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGK  217 (291)
T ss_pred             HHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHccc
Confidence             55666666666666666644211  012223333344455666677777777776665432124566666666777777


Q ss_pred             HHHHHHHHHHHHhcCCCCc-hHHHHHHHHHHHhCCChhHHHHHHHHHHH
Q 000951          962 FVDALKLKGTMELSGVKLD-VVSYNVLISGLCANGDVMPAFELYEEMKH 1009 (1211)
Q Consensus       962 ~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 1009 (1211)
                      +++|...+......  .|+ ...+..+...+...|.++++...+....+
T Consensus       218 ~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  264 (291)
T COG0457         218 YEEALEYYEKALEL--DPDNAEALYNLALLLLELGRYEEALEALEKALE  264 (291)
T ss_pred             HHHHHHHHHHHHhh--CcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHH
Confidence            77777765544433  444 23444555544455556666666665543

>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=97.19  E-value=0.0052  Score=68.92  Aligned_cols=124  Identities=18%  Similarity=0.243  Sum_probs=95.9

Q ss_pred             CCCcCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCC--CCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhh
Q 000951          345 GLRPNEVSYGALLNGFCKHAKFDLARSLLERMRTNG--ISISCIAYTSVIDGLCKCGLLDEAMQLFNKMFKDGLNPDLIT  422 (1211)
Q Consensus       345 g~~p~~~t~~~ll~~~~~~g~~~~a~~l~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~  422 (1211)
                      +.+.+......+++.+....+++.+..++.+.....  ...-..|..++|..|.+.|..+.+..++..=..-|+-||..+
T Consensus        61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s  140 (429)
T PF10037_consen   61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS  140 (429)
T ss_pred             CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence            345566677777888777788888888877777652  222234556888888888888888888888888888889999


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 000951          423 FSVLINGFCKVGMTRKAKAVLCKMYRDGLVPNKIIYSTLIYYFCKM  468 (1211)
Q Consensus       423 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~  468 (1211)
                      +|.|+..+.+.|++..|.++...|..++...+..|+...+.+|.+.
T Consensus       141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~  186 (429)
T PF10037_consen  141 FNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY  186 (429)
T ss_pred             HHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence            9999999999999988888888888887777777777666666554

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=97.19  E-value=0.03  Score=59.00  Aligned_cols=180  Identities=9%  Similarity=-0.016  Sum_probs=96.7

Q ss_pred             CHhhHHHHHHHHHhcCcHHHHHHHHHHHHHCCCCCC--hhhHHHHHHHHHhhcchhhHHHHHHHHHHcCCCCCh----hH
Q 000951          805 DCFTFNVLMRKCCEAGEMGKAFDLFNIMNMLGVVPD--TNTQDAIIMGLKRIAAFQESHFVLRGMAEKGLTPKC----TQ  878 (1211)
Q Consensus       805 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~g~~p~~----~~  878 (1211)
                      +.......+..+...|++++|++.|+++....+.+.  ......++.+|.+.+++++|+..|++.++  ..|++    .+
T Consensus        31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~--~~P~~~~~~~a  108 (243)
T PRK10866         31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIR--LNPTHPNIDYV  108 (243)
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--hCcCCCchHHH
Confidence            333444455566677888888888888876432222  11234566777788888888888888877  55543    33


Q ss_pred             HHHHHHHHHhcC---------------C---hhhHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 000951          879 YITLINGMCRVG---------------N---FQGAFKLKDEMEALGISSSDVAESAMVRGLAHCGKVEEAMLVLNRMLRM  940 (1211)
Q Consensus       879 ~~~l~~~~~~~g---------------~---~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~  940 (1211)
                      +..++.+....+               +   ..+|+..|+..++. .|.+              ....+|..-+..+.+.
T Consensus       109 ~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~-yP~S--------------~ya~~A~~rl~~l~~~  173 (243)
T PRK10866        109 LYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRG-YPNS--------------QYTTDATKRLVFLKDR  173 (243)
T ss_pred             HHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHH-CcCC--------------hhHHHHHHHHHHHHHH
Confidence            333333321111               0   12344444444432 1111              1122332222211110


Q ss_pred             CcccCHHHHHHHHHHhhhhCCHHHHHHHHHHHHhcCCCCch----HHHHHHHHHHHhCCChhHHHHHHHHH
Q 000951          941 RLVPTIATFTTLIHKFCKEAKFVDALKLKGTMELSGVKLDV----VSYNVLISGLCANGDVMPAFELYEEM 1007 (1211)
Q Consensus       941 ~~~p~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~g~~~~a~~~~~~~ 1007 (1211)
                          -..--..++.-|.+.|+|.-|+.-++.+...  -|+.    .+...+..+|...|..++|.++....
T Consensus       174 ----la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~--Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l  238 (243)
T PRK10866        174 ----LAKYELSVAEYYTKRGAYVAVVNRVEQMLRD--YPDTQATRDALPLMENAYRQLQLNAQADKVAKII  238 (243)
T ss_pred             ----HHHHHHHHHHHHHHcCchHHHHHHHHHHHHH--CCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence                0011124566677788888887777766544  3432    25567777888888888887776554

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.17  E-value=0.073  Score=53.64  Aligned_cols=136  Identities=13%  Similarity=0.081  Sum_probs=85.3

Q ss_pred             hHHHHHHHHHhcCcHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhcchhhHHHHHHHHHH-----cCCCCChhHHHHH
Q 000951          808 TFNVLMRKCCEAGEMGKAFDLFNIMNMLGVVPDTNTQDAIIMGLKRIAAFQESHFVLRGMAE-----KGLTPKCTQYITL  882 (1211)
Q Consensus       808 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~-----~g~~p~~~~~~~l  882 (1211)
                      +.+.++.++.-.|+|.-...+++++++...+.++.....|+++-.+.|+.+.|...|+...+     .+++.+.......
T Consensus       179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~  258 (366)
T KOG2796|consen  179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS  258 (366)
T ss_pred             HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence            44445555555555555555555555544444455555555555556666666655554433     1222233334445


Q ss_pred             HHHHHhcCChhhHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCccc
Q 000951          883 INGMCRVGNFQGAFKLKDEMEALGISSSDVAESAMVRGLAHCGKVEEAMLVLNRMLRMRLVP  944 (1211)
Q Consensus       883 ~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~p  944 (1211)
                      +..+.-++++.+|...|+++...+ +.++.+.+.-+-++.-.|+..+|++..+.+++..|.|
T Consensus       259 a~i~lg~nn~a~a~r~~~~i~~~D-~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~  319 (366)
T KOG2796|consen  259 AFLHLGQNNFAEAHRFFTEILRMD-PRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRH  319 (366)
T ss_pred             hhheecccchHHHHHHHhhccccC-CCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCcc
Confidence            556667788889999998887664 4555666666666667899999999999999877665

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=97.14  E-value=0.79  Score=52.77  Aligned_cols=30  Identities=13%  Similarity=0.029  Sum_probs=18.3

Q ss_pred             CCCHhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 000951          417 NPDLITFSVLINGFCKVGMTRKAKAVLCKM  446 (1211)
Q Consensus       417 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m  446 (1211)
                      .|.+..|..+.....+.-.++-|...|-+.
T Consensus       689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc  718 (1189)
T KOG2041|consen  689 NPHPRLWRLLAEYALFKLALDTAEHAFVRC  718 (1189)
T ss_pred             CCchHHHHHHHHHHHHHHhhhhHhhhhhhh
Confidence            466777777766655555556666555443

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=97.14  E-value=0.043  Score=61.93  Aligned_cols=226  Identities=17%  Similarity=0.177  Sum_probs=118.3

Q ss_pred             HHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 000951          543 KAFSMFDEMVKLGHHPSIFTYGSLLKGLCKGGNLKEAKRFLNSLHHIPSAVDTVAYNTILAETCKSGNLWEAIVLLDEMV  622 (1211)
Q Consensus       543 ~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~  622 (1211)
                      +-+.-++++.+.|-.|+....   ...|+-.|++.+|.++|.+                      +|.-..|+++|..|.
T Consensus       618 ~li~EL~~~k~rge~P~~iLl---A~~~Ay~gKF~EAAklFk~----------------------~G~enRAlEmyTDlR  672 (1081)
T KOG1538|consen  618 ELISELEERKKRGETPNDLLL---ADVFAYQGKFHEAAKLFKR----------------------SGHENRALEMYTDLR  672 (1081)
T ss_pred             HHHHHHHHHHhcCCCchHHHH---HHHHHhhhhHHHHHHHHHH----------------------cCchhhHHHHHHHHH
Confidence            444556777888877876543   3456667888888777754                      344455555555544


Q ss_pred             hCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHc--CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC
Q 000951          623 QFNLLPDRYTYTILLAGLCRKGKVVSALLFFEKVVSK--RTFSPNNVMFTCLVDGLFKAGQSKAAMHISKIMDKEGVYPD  700 (1211)
Q Consensus       623 ~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~  700 (1211)
                      -.+          +..-+...|..++-..+.++--+-  .--.|.     +-...+...|+.++|..+.           
T Consensus       673 MFD----------~aQE~~~~g~~~eKKmL~RKRA~WAr~~kePk-----aAAEmLiSaGe~~KAi~i~-----------  726 (1081)
T KOG1538|consen  673 MFD----------YAQEFLGSGDPKEKKMLIRKRADWARNIKEPK-----AAAEMLISAGEHVKAIEIC-----------  726 (1081)
T ss_pred             HHH----------HHHHHhhcCChHHHHHHHHHHHHHhhhcCCcH-----HHHHHhhcccchhhhhhhh-----------
Confidence            211          122233444444433333221110  000111     1122333445555554332           


Q ss_pred             HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 000951          701 TIAFNAVMDGFSRMGNMMMANDLLSTMRSRKLCPSLATYNILLHGYSKKKDLLMCSMLLNTMKMEGLLPDKLTCHSLILG  780 (1211)
Q Consensus       701 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~  780 (1211)
                                 ...|-.+-+.++-+++...    +..+...+..-+.+...+.-|-++|.+|-+         ..++.+.
T Consensus       727 -----------~d~gW~d~lidI~rkld~~----ere~l~~~a~ylk~l~~~gLAaeIF~k~gD---------~ksiVql  782 (1081)
T KOG1538|consen  727 -----------GDHGWVDMLIDIARKLDKA----EREPLLLCATYLKKLDSPGLAAEIFLKMGD---------LKSLVQL  782 (1081)
T ss_pred             -----------hcccHHHHHHHHHhhcchh----hhhHHHHHHHHHhhccccchHHHHHHHhcc---------HHHHhhh
Confidence                       2223333333333333221    233333444444455556667777776643         1235566


Q ss_pred             HHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhcchhhH
Q 000951          781 FCETGMLEVGFKFLKKMIAEGTMVDCFTFNVLMRKCCEAGEMGKAFDLFNIMNMLGVVPDTNTQDAIIMGLKRIAAFQES  860 (1211)
Q Consensus       781 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA  860 (1211)
                      ..+.++|++|..+-++..+  +.||  +|...++-++...+++||.+.|.+                      .|+-.||
T Consensus       783 Hve~~~W~eAFalAe~hPe--~~~d--Vy~pyaqwLAE~DrFeEAqkAfhk----------------------AGr~~EA  836 (1081)
T KOG1538|consen  783 HVETQRWDEAFALAEKHPE--FKDD--VYMPYAQWLAENDRFEEAQKAFHK----------------------AGRQREA  836 (1081)
T ss_pred             eeecccchHhHhhhhhCcc--cccc--ccchHHHHhhhhhhHHHHHHHHHH----------------------hcchHHH
Confidence            6778888888887776544  3333  455556666777777777766644                      3677788


Q ss_pred             HHHHHHHHH
Q 000951          861 HFVLRGMAE  869 (1211)
Q Consensus       861 ~~~~~~~~~  869 (1211)
                      ..++++...
T Consensus       837 ~~vLeQLtn  845 (1081)
T KOG1538|consen  837 VQVLEQLTN  845 (1081)
T ss_pred             HHHHHHhhh
Confidence            888877654

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=97.09  E-value=0.0071  Score=64.16  Aligned_cols=27  Identities=15%  Similarity=0.117  Sum_probs=11.3

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 000951          913 AESAMVRGLAHCGKVEEAMLVLNRMLR  939 (1211)
Q Consensus       913 ~~~~l~~~~~~~g~~~eA~~~~~~~~~  939 (1211)
                      ++..++.+|...|++++|+..|+++++
T Consensus       182 A~y~LG~~y~~~g~~~~A~~~f~~vv~  208 (263)
T PRK10803        182 ANYWLGQLNYNKGKKDDAAYYFASVVK  208 (263)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            333444444444444444444444443

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=97.07  E-value=0.0059  Score=64.75  Aligned_cols=90  Identities=9%  Similarity=-0.046  Sum_probs=61.5

Q ss_pred             HhhcchhhHHHHHHHHHHcCCCCCh----hHHHHHHHHHHhcCChhhHHHHHHHHHHcC--CCCchHHHHHHHHHHHhcC
Q 000951          852 KRIAAFQESHFVLRGMAEKGLTPKC----TQYITLINGMCRVGNFQGAFKLKDEMEALG--ISSSDVAESAMVRGLAHCG  925 (1211)
Q Consensus       852 ~~~g~~~eA~~~~~~~~~~g~~p~~----~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g  925 (1211)
                      .+.|++++|+..|+..++  ..|+.    .++..++.+|...|++++|...|+.+++..  .+....++..++.++...|
T Consensus       154 ~~~~~y~~Ai~af~~fl~--~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g  231 (263)
T PRK10803        154 QDKSRQDDAIVAFQNFVK--KYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKG  231 (263)
T ss_pred             HhcCCHHHHHHHHHHHHH--HCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcC
Confidence            445677777777777776  55543    466777777777778888887777776531  1223556666777777788


Q ss_pred             CHHHHHHHHHHHHhCCcc
Q 000951          926 KVEEAMLVLNRMLRMRLV  943 (1211)
Q Consensus       926 ~~~eA~~~~~~~~~~~~~  943 (1211)
                      ++++|...|+++++..|.
T Consensus       232 ~~~~A~~~~~~vi~~yP~  249 (263)
T PRK10803        232 DTAKAKAVYQQVIKKYPG  249 (263)
T ss_pred             CHHHHHHHHHHHHHHCcC
Confidence            888888888888776544

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=97.05  E-value=0.0016  Score=53.26  Aligned_cols=53  Identities=19%  Similarity=0.288  Sum_probs=33.7

Q ss_pred             hcCChhhHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 000951          888 RVGNFQGAFKLKDEMEALGISSSDVAESAMVRGLAHCGKVEEAMLVLNRMLRMR  941 (1211)
Q Consensus       888 ~~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~  941 (1211)
                      ..|++++|++.|+++.+. .|.+..++..++.+|.+.|++++|..++++++...
T Consensus         3 ~~~~~~~A~~~~~~~l~~-~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~   55 (68)
T PF14559_consen    3 KQGDYDEAIELLEKALQR-NPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQD   55 (68)
T ss_dssp             HTTHHHHHHHHHHHHHHH-TTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGG
T ss_pred             hccCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence            456666666666666655 24466666666777777777777777777666654

...

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=97.04  E-value=0.0088  Score=64.65  Aligned_cols=94  Identities=10%  Similarity=-0.045  Sum_probs=58.8

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhCCcccCHHHHHHHHHHhhhhCCHHHHHHHHHHHHhcCCCCchH-HHHHHHHHH
Q 000951          913 AESAMVRGLAHCGKVEEAMLVLNRMLRMRLVPTIATFTTLIHKFCKEAKFVDALKLKGTMELSGVKLDVV-SYNVLISGL  991 (1211)
Q Consensus       913 ~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~p~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~  991 (1211)
                      .+..++..+.+.+++.+|+..-++++++++. |..++..-|.+|...|+++.|+..|+.+...  .|++. +-.-+...-
T Consensus       259 ~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~-N~KALyRrG~A~l~~~e~~~A~~df~ka~k~--~P~Nka~~~el~~l~  335 (397)
T KOG0543|consen  259 CHLNLAACYLKLKEYKEAIESCNKVLELDPN-NVKALYRRGQALLALGEYDLARDDFQKALKL--EPSNKAARAELIKLK  335 (397)
T ss_pred             HhhHHHHHHHhhhhHHHHHHHHHHHHhcCCC-chhHHHHHHHHHHhhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHH
Confidence            3445666667777777777777777777655 7777777777777777777777777766655  67554 334444433


Q ss_pred             HhCCChhH-HHHHHHHHHH
Q 000951          992 CANGDVMP-AFELYEEMKH 1009 (1211)
Q Consensus       992 ~~~g~~~~-a~~~~~~~~~ 1009 (1211)
                      .+...+.+ ..++|..|..
T Consensus       336 ~k~~~~~~kekk~y~~mF~  354 (397)
T KOG0543|consen  336 QKIREYEEKEKKMYANMFA  354 (397)
T ss_pred             HHHHHHHHHHHHHHHHHhh
Confidence            33333333 3566666654

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=97.04  E-value=0.13  Score=52.87  Aligned_cols=52  Identities=13%  Similarity=0.061  Sum_probs=33.1

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhCCccc--CHHHHHHHHHHhhhhCCHHHHHH
Q 000951          916 AMVRGLAHCGKVEEAMLVLNRMLRMRLVP--TIATFTTLIHKFCKEAKFVDALK  967 (1211)
Q Consensus       916 ~l~~~~~~~g~~~eA~~~~~~~~~~~~~p--~~~~~~~L~~~~~~~g~~~~A~~  967 (1211)
                      .++..|.+.|.+..|..-++.+++.-|..  ...++..|+.+|.+.|..+.|..
T Consensus       146 ~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~~  199 (203)
T PF13525_consen  146 YIARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAADT  199 (203)
T ss_dssp             HHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred             HHHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHHH
Confidence            45677788888888888888887765432  22455667777777777764443

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=97.04  E-value=0.58  Score=49.38  Aligned_cols=63  Identities=21%  Similarity=0.027  Sum_probs=26.8

Q ss_pred             HHHHHHHHHHHccCChHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 000951          737 ATYNILLHGYSKKKDLLMCSMLLNTMKME-GLLPDKLTCHSLILGFCETGMLEVGFKFLKKMIA  799 (1211)
Q Consensus       737 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  799 (1211)
                      ..+......+...+++..+...+...... ........+......+...+++..+...+.....
T Consensus        60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  123 (291)
T COG0457          60 GLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALA  123 (291)
T ss_pred             HHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence            33444444444445555555444444321 0111223333334444444445555555555444

>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends

Probab=96.97  E-value=0.011  Score=51.54  Aligned_cols=30  Identities=10%  Similarity=0.464  Sum_probs=18.2

Q ss_pred             HHHHHHHHHHHhCCCCCCHhhHHHHHHHHH
Q 000951          402 DEAMQLFNKMFKDGLNPDLITFSVLINGFC  431 (1211)
Q Consensus       402 ~~A~~~~~~m~~~g~~p~~~~~~~li~~~~  431 (1211)
                      -+.+.+|+.|+..+++|+..+|+.++..+.
T Consensus        86 ~~LLtvYqDiL~~~lKP~~etYnivl~~Ll  115 (120)
T PF08579_consen   86 TNLLTVYQDILSNKLKPNDETYNIVLGSLL  115 (120)
T ss_pred             HHHHHHHHHHHHhccCCcHHHHHHHHHHHH
Confidence            345556666666666666666666665554

Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=96.97  E-value=0.029  Score=57.60  Aligned_cols=58  Identities=10%  Similarity=0.091  Sum_probs=24.2

Q ss_pred             HHHHHHhcCcHHHHHHHHHHHHHCCCCCC--hhhHHHHHHHHHhhcchhhHHHHHHHHHH
Q 000951          812 LMRKCCEAGEMGKAFDLFNIMNMLGVVPD--TNTQDAIIMGLKRIAAFQESHFVLRGMAE  869 (1211)
Q Consensus       812 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~eA~~~~~~~~~  869 (1211)
                      .+..+...|++++|++.|+.+........  ......++.++.+.|++++|+..|++.++
T Consensus        11 ~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~   70 (203)
T PF13525_consen   11 KALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIK   70 (203)
T ss_dssp             HHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            33344445555555555555543221111  22334444444444444444444444444

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=96.96  E-value=0.011  Score=63.85  Aligned_cols=139  Identities=16%  Similarity=0.078  Sum_probs=89.2

Q ss_pred             HHHHHHHhcCChhhHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCcccCHHHHHHHHHHhhhhC
Q 000951          881 TLINGMCRVGNFQGAFKLKDEMEALGISSSDVAESAMVRGLAHCGKVEEAMLVLNRMLRMRLVPTIATFTTLIHKFCKEA  960 (1211)
Q Consensus       881 ~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~p~~~~~~~L~~~~~~~g  960 (1211)
                      .-++.+.+.|++..|...|++++.. +            -|.+.-+.++.....    +    .-..++.+|+.+|.+.+
T Consensus       213 e~Gn~~fK~gk~~~A~~~Yerav~~-l------------~~~~~~~~ee~~~~~----~----~k~~~~lNlA~c~lKl~  271 (397)
T KOG0543|consen  213 ERGNVLFKEGKFKLAKKRYERAVSF-L------------EYRRSFDEEEQKKAE----A----LKLACHLNLAACYLKLK  271 (397)
T ss_pred             HhhhHHHhhchHHHHHHHHHHHHHH-h------------hccccCCHHHHHHHH----H----HHHHHhhHHHHHHHhhh
Confidence            4456677778888888887777532 0            011111112222211    1    12336777888888888


Q ss_pred             CHHHHHHHHHHHHhcCCCCchH-HHHHHHHHHHhCCChhHHHHHHHHHHHcCCccCh-hhHHHHHHHHHhcccchHHHHH
Q 000951          961 KFVDALKLKGTMELSGVKLDVV-SYNVLISGLCANGDVMPAFELYEEMKHKGLCPNS-TTYSVLIDAISKKENNLVKGEI 1038 (1211)
Q Consensus       961 ~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~~~~~~~a~~ 1038 (1211)
                      ++.+|+.........  +|++. ..+.-+.+|...|+++.|...++++++  +.|+. ....++...-.+.....++...
T Consensus       272 ~~~~Ai~~c~kvLe~--~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k--~~P~Nka~~~el~~l~~k~~~~~~kekk  347 (397)
T KOG0543|consen  272 EYKEAIESCNKVLEL--DPNNVKALYRRGQALLALGEYDLARDDFQKALK--LEPSNKAARAELIKLKQKIREYEEKEKK  347 (397)
T ss_pred             hHHHHHHHHHHHHhc--CCCchhHHHHHHHHHHhhccHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence            888888876655444  67555 778888888888888888888888866  67777 6666666665666666666666


Q ss_pred             HHHHHH
Q 000951         1039 LLKDIQ 1044 (1211)
Q Consensus      1039 ~~~~l~ 1044 (1211)
                      +++.|-
T Consensus       348 ~y~~mF  353 (397)
T KOG0543|consen  348 MYANMF  353 (397)
T ss_pred             HHHHHh
Confidence            776663

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=96.96  E-value=0.0035  Score=52.08  Aligned_cols=61  Identities=16%  Similarity=0.051  Sum_probs=36.5

Q ss_pred             HHHHhcCCHHHHHHHHHHHHhCCcccCHHHHHHHHHHhhhhCCHHHHHHHHHHHHhcCCCCchH
Q 000951          919 RGLAHCGKVEEAMLVLNRMLRMRLVPTIATFTTLIHKFCKEAKFVDALKLKGTMELSGVKLDVV  982 (1211)
Q Consensus       919 ~~~~~~g~~~eA~~~~~~~~~~~~~p~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~  982 (1211)
                      .+|.+.+++++|+++++++++.+|. ++..|...|.++...|++++|...++...+.  .|+..
T Consensus         3 ~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~--~p~~~   63 (73)
T PF13371_consen    3 QIYLQQEDYEEALEVLERALELDPD-DPELWLQRARCLFQLGRYEEALEDLERALEL--SPDDP   63 (73)
T ss_pred             HHHHhCCCHHHHHHHHHHHHHhCcc-cchhhHHHHHHHHHhccHHHHHHHHHHHHHH--CCCcH
Confidence            3455566666666666666666554 5666666666666666666666666655544  45433

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=96.93  E-value=0.19  Score=57.04  Aligned_cols=81  Identities=15%  Similarity=0.120  Sum_probs=41.8

Q ss_pred             hhhHHHHHHHHHhhcchhhHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCchHHHHHHHHH
Q 000951          841 TNTQDAIIMGLKRIAAFQESHFVLRGMAEKGLTPKCTQYITLINGMCRVGNFQGAFKLKDEMEALGISSSDVAESAMVRG  920 (1211)
Q Consensus       841 ~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~  920 (1211)
                      .++...+..-+.+...+.-|-++|.+|-+         .-.+.......++|++|..+-++..+.  .|  .+|.-.+.-
T Consensus       747 re~l~~~a~ylk~l~~~gLAaeIF~k~gD---------~ksiVqlHve~~~W~eAFalAe~hPe~--~~--dVy~pyaqw  813 (1081)
T KOG1538|consen  747 REPLLLCATYLKKLDSPGLAAEIFLKMGD---------LKSLVQLHVETQRWDEAFALAEKHPEF--KD--DVYMPYAQW  813 (1081)
T ss_pred             hhHHHHHHHHHhhccccchHHHHHHHhcc---------HHHHhhheeecccchHhHhhhhhCccc--cc--cccchHHHH
Confidence            34444444444455556666666666544         335556666677777777766655432  12  223333333


Q ss_pred             HHhcCCHHHHHHHH
Q 000951          921 LAHCGKVEEAMLVL  934 (1211)
Q Consensus       921 ~~~~g~~~eA~~~~  934 (1211)
                      ++...+++||.+.|
T Consensus       814 LAE~DrFeEAqkAf  827 (1081)
T KOG1538|consen  814 LAENDRFEEAQKAF  827 (1081)
T ss_pred             hhhhhhHHHHHHHH
Confidence            44444444444443

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=96.83  E-value=0.038  Score=59.90  Aligned_cols=143  Identities=10%  Similarity=-0.024  Sum_probs=99.9

Q ss_pred             hhHHHHHHHHHhhcchhhHHHHHHHHHHcCCCC-ChhHHHHHHHHHHh-cCChhhHHHHHHHHHHcCCCCchHHHHHHHH
Q 000951          842 NTQDAIIMGLKRIAAFQESHFVLRGMAEKGLTP-KCTQYITLINGMCR-VGNFQGAFKLKDEMEALGISSSDVAESAMVR  919 (1211)
Q Consensus       842 ~~~~~l~~~~~~~g~~~eA~~~~~~~~~~g~~p-~~~~~~~l~~~~~~-~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~  919 (1211)
                      .+|..++....+.+..++|..+|.++++  ..+ ....|...+..-.+ .++.+.|.++|+..++. ++.+...|...++
T Consensus         2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~--~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~   78 (280)
T PF05843_consen    2 LVWIQYMRFMRRTEGIEAARKVFKRARK--DKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLD   78 (280)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHC--CCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCChHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHH
Confidence            3566777777777778888888888874  222 34667777776444 56666699999999876 6778888888888


Q ss_pred             HHHhcCCHHHHHHHHHHHHhCCcc-c-CHHHHHHHHHHhhhhCCHHHHHHHHHHHHhcCCCCchHHHHHHHH
Q 000951          920 GLAHCGKVEEAMLVLNRMLRMRLV-P-TIATFTTLIHKFCKEAKFVDALKLKGTMELSGVKLDVVSYNVLIS  989 (1211)
Q Consensus       920 ~~~~~g~~~eA~~~~~~~~~~~~~-p-~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~  989 (1211)
                      .+...|+.+.|..+|++++..-+. . ....|...+.--.+.|+++...++.+.+.+.  -|+......+.+
T Consensus        79 ~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~--~~~~~~~~~f~~  148 (280)
T PF05843_consen   79 FLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL--FPEDNSLELFSD  148 (280)
T ss_dssp             HHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH--TTTS-HHHHHHC
T ss_pred             HHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--hhhhhHHHHHHH
Confidence            889999999999999999875211 1 2358888888888889999988888777665  555444444444

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=96.75  E-value=0.17  Score=55.77  Aligned_cols=113  Identities=14%  Similarity=0.058  Sum_probs=59.1

Q ss_pred             HHHHHHhcCChHHHHHHHHHHHHcC---CCCCHhhHHHHHHHHHh---cCcHHHHHHHHHHHHHCCCCCChhhHHHHHHH
Q 000951          777 LILGFCETGMLEVGFKFLKKMIAEG---TMVDCFTFNVLMRKCCE---AGEMGKAFDLFNIMNMLGVVPDTNTQDAIIMG  850 (1211)
Q Consensus       777 l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~  850 (1211)
                      ++-+|....+|+.-+++++.+...-   +.....+-..++-++.+   .|+.++|++++..++...-.+++++|..++..
T Consensus       147 lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GRI  226 (374)
T PF13281_consen  147 LLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGRI  226 (374)
T ss_pred             HHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHHH
Confidence            4444555555555555555554420   00012222233334444   56666666666554443444555666655555


Q ss_pred             HHh---------hcchhhHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCC
Q 000951          851 LKR---------IAAFQESHFVLRGMAEKGLTPKCTQYITLINGMCRVGN  891 (1211)
Q Consensus       851 ~~~---------~g~~~eA~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~  891 (1211)
                      |..         ....++|+.+|.+.-+  ++|+..+=.+++..+...|.
T Consensus       227 yKD~~~~s~~~d~~~ldkAi~~Y~kgFe--~~~~~Y~GIN~AtLL~~~g~  274 (374)
T PF13281_consen  227 YKDLFLESNFTDRESLDKAIEWYRKGFE--IEPDYYSGINAATLLMLAGH  274 (374)
T ss_pred             HHHHHHHcCccchHHHHHHHHHHHHHHc--CCccccchHHHHHHHHHcCC
Confidence            532         1236788888888887  66766444444544555554

>PRK11906 transcriptional regulator; Provisional

Probab=96.75  E-value=0.044  Score=61.04  Aligned_cols=112  Identities=9%  Similarity=0.005  Sum_probs=54.8

Q ss_pred             hhhHHHHHHHHHH-cCCCCCh-hHHHHHHHHHHhc---------CChhhHHHHHHHHHHcCCCCchHHHHHHHHHHHhcC
Q 000951          857 FQESHFVLRGMAE-KGLTPKC-TQYITLINGMCRV---------GNFQGAFKLKDEMEALGISSSDVAESAMVRGLAHCG  925 (1211)
Q Consensus       857 ~~eA~~~~~~~~~-~g~~p~~-~~~~~l~~~~~~~---------g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  925 (1211)
                      .+.|+.+|.+++. ..++|+. ..|..++.++...         ....+|.++-+++.+.+ +.|+.+...++.++.-.|
T Consensus       274 ~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~~  352 (458)
T PRK11906        274 IYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDIT-TVDGKILAIMGLITGLSG  352 (458)
T ss_pred             HHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhhc
Confidence            3466667777771 2266764 4555544443311         12234444444444443 344444444555444445


Q ss_pred             CHHHHHHHHHHHHhCCcccCHHHHHHHHHHhhhhCCHHHHHHHHH
Q 000951          926 KVEEAMLVLNRMLRMRLVPTIATFTTLIHKFCKEAKFVDALKLKG  970 (1211)
Q Consensus       926 ~~~eA~~~~~~~~~~~~~p~~~~~~~L~~~~~~~g~~~~A~~~~~  970 (1211)
                      +++.|...|+++...+|. .+.+|...+..+.-.|+.++|.+.++
T Consensus       353 ~~~~a~~~f~rA~~L~Pn-~A~~~~~~~~~~~~~G~~~~a~~~i~  396 (458)
T PRK11906        353 QAKVSHILFEQAKIHSTD-IASLYYYRALVHFHNEKIEEARICID  396 (458)
T ss_pred             chhhHHHHHHHHhhcCCc-cHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            555555555555554433 44455555555555555555555443

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=96.68  E-value=0.0088  Score=49.62  Aligned_cols=59  Identities=19%  Similarity=0.172  Sum_probs=40.6

Q ss_pred             HHHHhcCChhhHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCcc
Q 000951          884 NGMCRVGNFQGAFKLKDEMEALGISSSDVAESAMVRGLAHCGKVEEAMLVLNRMLRMRLV  943 (1211)
Q Consensus       884 ~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~  943 (1211)
                      .+|.+.+++++|.+.++++++.+ |.+...+...+.++...|++++|...|+++++.+|.
T Consensus         3 ~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~   61 (73)
T PF13371_consen    3 QIYLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERALELSPD   61 (73)
T ss_pred             HHHHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCC
Confidence            45666777777777777776653 556666666777777777777777777777776644

>PRK11906 transcriptional regulator; Provisional

Probab=96.68  E-value=0.059  Score=60.09  Aligned_cols=146  Identities=10%  Similarity=-0.033  Sum_probs=103.9

Q ss_pred             ChhhHHHHHHHHHH-cCCCCc-hHHHHHHHHHHHh---------cCCHHHHHHHHHHHHhCCcccCHHHHHHHHHHhhhh
Q 000951          891 NFQGAFKLKDEMEA-LGISSS-DVAESAMVRGLAH---------CGKVEEAMLVLNRMLRMRLVPTIATFTTLIHKFCKE  959 (1211)
Q Consensus       891 ~~~eA~~~~~~~~~-~~~~~~-~~~~~~l~~~~~~---------~g~~~eA~~~~~~~~~~~~~p~~~~~~~L~~~~~~~  959 (1211)
                      ..+.|+.+|.++.. ...+|+ ..+|..++..+..         .....+|.++.+++++.++. |+.+...+|.++...
T Consensus       273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~-Da~a~~~~g~~~~~~  351 (458)
T PRK11906        273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTV-DGKILAIMGLITGLS  351 (458)
T ss_pred             HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHhh
Confidence            34678889999982 223444 4455555444332         23367889999999999977 999999999999999


Q ss_pred             CCHHHHHHHHHHHHhcCCCCchH-HHHHHHHHHHhCCChhHHHHHHHHHHHcCCccCh--hhHHHHHHHHHhcccchHHH
Q 000951          960 AKFVDALKLKGTMELSGVKLDVV-SYNVLISGLCANGDVMPAFELYEEMKHKGLCPNS--TTYSVLIDAISKKENNLVKG 1036 (1211)
Q Consensus       960 g~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~p~~--~~~~~l~~~~~~~~~~~~~a 1036 (1211)
                      |+++.|...|++...+  .||.. +|+..+....-+|+.++|.+..++..+  +.|..  .+.+.+.-..+-....+++.
T Consensus       352 ~~~~~a~~~f~rA~~L--~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alr--LsP~~~~~~~~~~~~~~~~~~~~~~~~  427 (458)
T PRK11906        352 GQAKVSHILFEQAKIH--STDIASLYYYRALVHFHNEKIEEARICIDKSLQ--LEPRRRKAVVIKECVDMYVPNPLKNNI  427 (458)
T ss_pred             cchhhHHHHHHHHhhc--CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhc--cCchhhHHHHHHHHHHHHcCCchhhhH
Confidence            9999999999977766  99876 888999999999999999999988644  45544  23333333234445555534


Q ss_pred             HHHHH
Q 000951         1037 EILLK 1041 (1211)
Q Consensus      1037 ~~~~~ 1041 (1211)
                      .-+++
T Consensus       428 ~~~~~  432 (458)
T PRK11906        428 KLYYK  432 (458)
T ss_pred             HHHhh
Confidence            43333

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=96.60  E-value=0.017  Score=64.05  Aligned_cols=68  Identities=18%  Similarity=0.061  Sum_probs=43.0

Q ss_pred             CCCC-hhHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCch---HHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 000951          872 LTPK-CTQYITLINGMCRVGNFQGAFKLKDEMEALGISSSD---VAESAMVRGLAHCGKVEEAMLVLNRMLRM  940 (1211)
Q Consensus       872 ~~p~-~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~eA~~~~~~~~~~  940 (1211)
                      .+|+ ...++.++.+|...|++++|+..|+++++.+ +.+.   .+|+.++.+|...|++++|++.++++++.
T Consensus        70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~-Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel  141 (453)
T PLN03098         70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELN-PNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD  141 (453)
T ss_pred             CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            3443 3666677777777777777777777766652 2222   24666777777777777777777776664

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=96.50  E-value=0.0031  Score=53.17  Aligned_cols=61  Identities=15%  Similarity=0.211  Sum_probs=25.5

Q ss_pred             HHHHHHHHHHhcCChhhHHHHHHHHHHc--CCCC---c-hHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 000951          878 QYITLINGMCRVGNFQGAFKLKDEMEAL--GISS---S-DVAESAMVRGLAHCGKVEEAMLVLNRML  938 (1211)
Q Consensus       878 ~~~~l~~~~~~~g~~~eA~~~~~~~~~~--~~~~---~-~~~~~~l~~~~~~~g~~~eA~~~~~~~~  938 (1211)
                      +|..++.+|...|++++|+..|+++++.  ...+   . ..++..++.++...|++++|++.+++++
T Consensus         7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al   73 (78)
T PF13424_consen    7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL   73 (78)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            3444444555555555555554444321  0000   0 2233444444444444444444444443

...

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=96.47  E-value=0.1  Score=58.04  Aligned_cols=177  Identities=11%  Similarity=0.115  Sum_probs=103.5

Q ss_pred             ccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHH--HhcCcHHHH
Q 000951          748 KKKDLLMCSMLLNTMKMEGLLPDKLTCHSLILGFCETGMLEVGFKFLKKMIAEGTMVDCFTFNVLMRKC--CEAGEMGKA  825 (1211)
Q Consensus       748 ~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~g~~~~A  825 (1211)
                      +..+++.-++.-+++++  +.||..+...++ +-.......+|+++++++++.|-.       .+....  ...|..   
T Consensus       180 RERnp~aRIkaA~eALe--i~pdCAdAYILL-AEEeA~Ti~Eae~l~rqAvkAgE~-------~lg~s~~~~~~g~~---  246 (539)
T PF04184_consen  180 RERNPQARIKAAKEALE--INPDCADAYILL-AEEEASTIVEAEELLRQAVKAGEA-------SLGKSQFLQHHGHF---  246 (539)
T ss_pred             hcCCHHHHHHHHHHHHH--hhhhhhHHHhhc-ccccccCHHHHHHHHHHHHHHHHH-------hhchhhhhhcccch---
Confidence            44566677777777777  667775544333 333456678888888888875311       111100  111111   


Q ss_pred             HHHHHHHHHCCCCCChhhHHHHHHHHHhhcchhhHHHHHHHHHHcCCCCC--h-hHHHHHHHHHHhcCChhhHHHHHHHH
Q 000951          826 FDLFNIMNMLGVVPDTNTQDAIIMGLKRIAAFQESHFVLRGMAEKGLTPK--C-TQYITLINGMCRVGNFQGAFKLKDEM  902 (1211)
Q Consensus       826 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~g~~p~--~-~~~~~l~~~~~~~g~~~eA~~~~~~~  902 (1211)
                         ++........+-...-..++....+.|+.+||++.|+++++  ..|.  . .....|+.++...+.+.++..++.+-
T Consensus       247 ---~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlk--e~p~~~~l~IrenLie~LLelq~Yad~q~lL~kY  321 (539)
T PF04184_consen  247 ---WEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLK--EFPNLDNLNIRENLIEALLELQAYADVQALLAKY  321 (539)
T ss_pred             ---hhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHh--hCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence               11111111222233445677777788999999999999886  3342  2 56778888888999999998888887


Q ss_pred             HHcCCCCchHHHHHHHHHH-------------HhcCC---HHHHHHHHHHHHhCCc
Q 000951          903 EALGISSSDVAESAMVRGL-------------AHCGK---VEEAMLVLNRMLRMRL  942 (1211)
Q Consensus       903 ~~~~~~~~~~~~~~l~~~~-------------~~~g~---~~eA~~~~~~~~~~~~  942 (1211)
                      .+...+.+..+++.-+-.-             .+.|-   -..|.+.++++.+.+|
T Consensus       322 dDi~lpkSAti~YTaALLkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNP  377 (539)
T PF04184_consen  322 DDISLPKSATICYTAALLKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNP  377 (539)
T ss_pred             ccccCCchHHHHHHHHHHHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCC
Confidence            6554455555444322211             11221   2346788888888663

The molecular function of this protein is uncertain.

>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses

Probab=96.44  E-value=0.026  Score=55.86  Aligned_cols=102  Identities=21%  Similarity=0.283  Sum_probs=73.3

Q ss_pred             ChHHHHHHHHHHHH-----cCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHH
Q 000951          104 NPSVFDLLIRVYLR-----EGMVEYALETFQLMGFRGFNPSVYTCNMMLSFMLKDRRVDSVWLLFDDMLDRKICPNVATF  178 (1211)
Q Consensus       104 ~~~~~~~l~~~~~~-----~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~l~~~~~~~~a~~~~~~m~~~~~~~~~~~~  178 (1211)
                      +...|..++..|.+     .|.++-....+..|.+.|+..|..+|+.||+++-+ |.+- -..+|+.+.-.         
T Consensus        46 ~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv-p~n~fQ~~F~h---------  114 (228)
T PF06239_consen   46 DKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV-PRNFFQAEFMH---------  114 (228)
T ss_pred             cHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc-cccHHHHHhcc---------
Confidence            44556666666654     47788888889999999999999999999999976 3332 33444443221         


Q ss_pred             HHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHHcC
Q 000951          179 NILINVSCVEGKLKKAGYLLRKMEESGYVPNIVTYNTLLNWYCKKG  224 (1211)
Q Consensus       179 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g  224 (1211)
                            |  -.+.+-|+.++++|...|+-||..++..+++.+.+.+
T Consensus       115 ------y--p~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s  152 (228)
T PF06239_consen  115 ------Y--PRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKS  152 (228)
T ss_pred             ------C--cHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhcccc
Confidence                  1  1234567888999999999999999999988885544

ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].

>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses

Probab=96.41  E-value=0.052  Score=53.81  Aligned_cols=116  Identities=16%  Similarity=0.206  Sum_probs=83.2

Q ss_pred             CCCHHHHHHHHHHHH-----hCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHh
Q 000951          137 NPSVYTCNMMLSFML-----KDRRVDSVWLLFDDMLDRKICPNVATFNILINVSCVEGKLKKAGYLLRKMEESGYVPNIV  211 (1211)
Q Consensus       137 ~~~~~~~~~ll~~l~-----~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~  211 (1211)
                      ..+-.+|..+++.+.     +.|.++-....+..|.+.|+.-|..+|+.|++++=+ |.+- ...+|+.+--        
T Consensus        44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv-p~n~fQ~~F~--------  113 (228)
T PF06239_consen   44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV-PRNFFQAEFM--------  113 (228)
T ss_pred             cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc-cccHHHHHhc--------
Confidence            456777888888776     446777788888899999999999999999998865 4432 2222322221        


Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChH-HHHHHHHHH
Q 000951          212 TYNTLLNWYCKKGRYKAAFKLIDCMASKGIEADVCTYNMFIDDLCRNNRSA-KGYLLLKNM  271 (1211)
Q Consensus       212 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~-~A~~~~~~m  271 (1211)
                             -|  -.+-+-|++++++|...|+-||..|+..|++.+.+.+..- +...+.=.|
T Consensus       114 -------hy--p~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~p~~K~~rmmYWm  165 (228)
T PF06239_consen  114 -------HY--PRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSHPMKKYRRMMYWM  165 (228)
T ss_pred             -------cC--cHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence                   11  1234678999999999999999999999999998776543 333333333

ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=96.36  E-value=0.061  Score=58.32  Aligned_cols=130  Identities=12%  Similarity=0.024  Sum_probs=78.0

Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 000951          422 TFSVLINGFCKVGMTRKAKAVLCKMYRDGLVPNKIIYSTLIYY-FCKMGKVTEAMKVYAVMNRNAQGSDHFTCNMLVASL  500 (1211)
Q Consensus       422 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~-~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~  500 (1211)
                      +|..++...-+.+..+.|..+|.+..+.+ ..+...|...... +...++.+.|..+|+...+.-+ .+...|...++.+
T Consensus         3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~-~~~~~~~~Y~~~l   80 (280)
T PF05843_consen    3 VWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFP-SDPDFWLEYLDFL   80 (280)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHT-T-HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHH
Confidence            45666666666666777777777766432 2233334333333 2234556667777777666533 3666677777777


Q ss_pred             HcCCChHHHHHHHHHHHhcCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 000951          501 CKGGKVCEAEDYVGHMKRIGVVPNS---ITFDCMIDGYGTLGDGLKAFSMFDEMVKL  554 (1211)
Q Consensus       501 ~~~g~~~~A~~~~~~~~~~g~~p~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~  554 (1211)
                      .+.++.+.|..+|++.... +.++.   ..|...++.=.+.|+.+.+.++.+++.+.
T Consensus        81 ~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~  136 (280)
T PF05843_consen   81 IKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL  136 (280)
T ss_dssp             HHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred             HHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            7777777777777777654 22222   36777777777778888888887777763

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=96.33  E-value=0.011  Score=49.84  Aligned_cols=62  Identities=11%  Similarity=0.186  Sum_probs=33.6

Q ss_pred             hHHHHHHHHHhhcchhhHHHHHHHHHHc--CCC---CC-hhHHHHHHHHHHhcCChhhHHHHHHHHHH
Q 000951          843 TQDAIIMGLKRIAAFQESHFVLRGMAEK--GLT---PK-CTQYITLINGMCRVGNFQGAFKLKDEMEA  904 (1211)
Q Consensus       843 ~~~~l~~~~~~~g~~~eA~~~~~~~~~~--g~~---p~-~~~~~~l~~~~~~~g~~~eA~~~~~~~~~  904 (1211)
                      +++.++..|...|++++|+..|+++++.  ...   |+ ..++..++.++...|++++|+++++++.+
T Consensus         7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~   74 (78)
T PF13424_consen    7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD   74 (78)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            3444444455555555555555554431  011   11 25566777777777777777777777653

...

>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.25  E-value=0.93  Score=45.65  Aligned_cols=88  Identities=17%  Similarity=0.121  Sum_probs=50.4

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhC----CcccCH-HHHHHHHHHhhhhCCHHHHHHHHHHHHhcC--CCC-chHHHHHH
Q 000951          916 AMVRGLAHCGKVEEAMLVLNRMLRM----RLVPTI-ATFTTLIHKFCKEAKFVDALKLKGTMELSG--VKL-DVVSYNVL  987 (1211)
Q Consensus       916 ~l~~~~~~~g~~~eA~~~~~~~~~~----~~~p~~-~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~--~~p-~~~~~~~l  987 (1211)
                      ....+|.+..++.||-..+.+-...    .--|+. ..+...+.++....+|..|...++.--..+  ..| +..+...|
T Consensus       155 k~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenL  234 (308)
T KOG1585|consen  155 KCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENL  234 (308)
T ss_pred             HhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHH
Confidence            4455667777777776665443221    111122 345555566667778999999877532222  123 33466777


Q ss_pred             HHHHHhCCChhHHHHHH
Q 000951          988 ISGLCANGDVMPAFELY 1004 (1211)
Q Consensus       988 ~~~~~~~g~~~~a~~~~ 1004 (1211)
                      +.+| ..|+.+++.++.
T Consensus       235 L~ay-d~gD~E~~~kvl  250 (308)
T KOG1585|consen  235 LTAY-DEGDIEEIKKVL  250 (308)
T ss_pred             HHHh-ccCCHHHHHHHH
Confidence            7776 567777766654

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=96.17  E-value=0.012  Score=42.84  Aligned_cols=42  Identities=24%  Similarity=0.264  Sum_probs=30.1

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCcccCHHHHHHHHH
Q 000951          912 VAESAMVRGLAHCGKVEEAMLVLNRMLRMRLVPTIATFTTLIH  954 (1211)
Q Consensus       912 ~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~p~~~~~~~L~~  954 (1211)
                      .++..++..|.+.|++++|+++|+++++..|. |+.+|..|+.
T Consensus         2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~-~~~a~~~La~   43 (44)
T PF13428_consen    2 AAWLALARAYRRLGQPDEAERLLRRALALDPD-DPEAWRALAQ   43 (44)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC-CHHHHHHhhh
Confidence            34666777777777777777777777777765 7777766653

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=96.12  E-value=0.018  Score=63.94  Aligned_cols=62  Identities=13%  Similarity=-0.039  Sum_probs=35.8

Q ss_pred             HhhHHHHHHHHHhcCcHHHHHHHHHHHHHCCCCCCh----hhHHHHHHHHHhhcchhhHHHHHHHHHH
Q 000951          806 CFTFNVLMRKCCEAGEMGKAFDLFNIMNMLGVVPDT----NTQDAIIMGLKRIAAFQESHFVLRGMAE  869 (1211)
Q Consensus       806 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~eA~~~~~~~~~  869 (1211)
                      ...++.++.+|.+.|++++|+..|+++++.  .|+.    .+|++++.+|...|+.++|+..++++++
T Consensus        75 a~a~~NLG~AL~~lGryeEAIa~f~rALeL--~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALe  140 (453)
T PLN03098         75 AEDAVNLGLSLFSKGRVKDALAQFETALEL--NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALR  140 (453)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            455566666666666666666666666553  2331    2356666666666666666666666655

>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=96.11  E-value=2.9  Score=45.97  Aligned_cols=107  Identities=21%  Similarity=0.157  Sum_probs=71.9

Q ss_pred             HHHHHHHHcCCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcC
Q 000951          494 NMLVASLCKGGKVCEAEDYVGHMKRIGVVPNSITFDCMIDGYGTLGDGLKAFSMFDEMVKLGHHPSIFTYGSLLKGLCKG  573 (1211)
Q Consensus       494 ~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~  573 (1211)
                      +..+.-+...|+...|.++..+..    .|+..-|-..+.+++..+++++-.+....      +-++.-|..++..|.+.
T Consensus       181 ~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~  250 (319)
T PF04840_consen  181 NDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKY  250 (319)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHC
Confidence            334555666777777777766654    47777888888888888888766554321      12346677778888888


Q ss_pred             CCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 000951          574 GNLKEAKRFLNSLHHIPSAVDTVAYNTILAETCKSGNLWEAIVLLDE  620 (1211)
Q Consensus       574 g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~  620 (1211)
                      |+..+|..++..+.          +..-+..|.++|++.+|.+.--+
T Consensus       251 ~~~~eA~~yI~k~~----------~~~rv~~y~~~~~~~~A~~~A~~  287 (319)
T PF04840_consen  251 GNKKEASKYIPKIP----------DEERVEMYLKCGDYKEAAQEAFK  287 (319)
T ss_pred             CCHHHHHHHHHhCC----------hHHHHHHHHHCCCHHHHHHHHHH
Confidence            88888877776621          14456777888888887765433

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=96.07  E-value=0.21  Score=48.24  Aligned_cols=68  Identities=18%  Similarity=0.280  Sum_probs=42.4

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhCCcccCHHHHHHHHHHhhhhCCHHHHHHHHHHHH-----hcCCCCchH
Q 000951          914 ESAMVRGLAHCGKVEEAMLVLNRMLRMRLVPTIATFTTLIHKFCKEAKFVDALKLKGTME-----LSGVKLDVV  982 (1211)
Q Consensus       914 ~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~p~~~~~~~L~~~~~~~g~~~~A~~~~~~~~-----~~~~~p~~~  982 (1211)
                      ...++..+...|++++|+..+++++..+|- |...|..++.+|...|+..+|+..|+.+.     ++|+.|++.
T Consensus        65 ~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~-~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~  137 (146)
T PF03704_consen   65 LERLAEALLEAGDYEEALRLLQRALALDPY-DEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPE  137 (146)
T ss_dssp             HHHHHHHHHHTT-HHHHHHHHHHHHHHSTT--HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HH
T ss_pred             HHHHHHHHHhccCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHH
Confidence            344566667777777777777777776654 77777777777777777777777776442     566666554

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=96.06  E-value=0.0053  Score=41.52  Aligned_cols=32  Identities=6%  Similarity=0.329  Sum_probs=25.1

Q ss_pred             HHHHHhCCcccCHHHHHHHHHHhhhhCCHHHHH
Q 000951          934 LNRMLRMRLVPTIATFTTLIHKFCKEAKFVDAL  966 (1211)
Q Consensus       934 ~~~~~~~~~~p~~~~~~~L~~~~~~~g~~~~A~  966 (1211)
                      |+++++.+|. |+.+|+.|+.+|...|++++|+
T Consensus         2 y~kAie~~P~-n~~a~~nla~~~~~~g~~~~A~   33 (34)
T PF13431_consen    2 YKKAIELNPN-NAEAYNNLANLYLNQGDYEEAI   33 (34)
T ss_pred             hHHHHHHCCC-CHHHHHHHHHHHHHCcCHHhhc
Confidence            5677777766 8888888888888888888875

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=96.03  E-value=0.21  Score=44.64  Aligned_cols=88  Identities=10%  Similarity=0.020  Sum_probs=43.0

Q ss_pred             HhhcchhhHHHHHHHHHHcCCCCC-hhHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCchH---HHHHHHHHHHhcCCH
Q 000951          852 KRIAAFQESHFVLRGMAEKGLTPK-CTQYITLINGMCRVGNFQGAFKLKDEMEALGISSSDV---AESAMVRGLAHCGKV  927 (1211)
Q Consensus       852 ~~~g~~~eA~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~g~~  927 (1211)
                      ...|+.++|++.|.+.+.  +-|. ..+|+.-+.++.-+|+.++|+.-++++++..-+....   +|..-+.+|...|+.
T Consensus        54 aE~g~Ld~AlE~F~qal~--l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~d  131 (175)
T KOG4555|consen   54 AEAGDLDGALELFGQALC--LAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGND  131 (175)
T ss_pred             HhccchHHHHHHHHHHHH--hcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCch
Confidence            344555555555555554  4443 3445555555555555555555555555432222222   223334455555555


Q ss_pred             HHHHHHHHHHHhCC
Q 000951          928 EEAMLVLNRMLRMR  941 (1211)
Q Consensus       928 ~eA~~~~~~~~~~~  941 (1211)
                      +.|..-|+.+.+.|
T Consensus       132 d~AR~DFe~AA~LG  145 (175)
T KOG4555|consen  132 DAARADFEAAAQLG  145 (175)
T ss_pred             HHHHHhHHHHHHhC
Confidence            55555555555544

>KOG2610 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.00  E-value=0.34  Score=50.80  Aligned_cols=148  Identities=12%  Similarity=0.077  Sum_probs=80.8

Q ss_pred             hcchhhHHHHHHHHHHcCCCC-ChhHHHHHHHHHHhcCChhhHHHHHHHHHHc---CCCCchHHHHHHHHHHHhcCCHHH
Q 000951          854 IAAFQESHFVLRGMAEKGLTP-KCTQYITLINGMCRVGNFQGAFKLKDEMEAL---GISSSDVAESAMVRGLAHCGKVEE  929 (1211)
Q Consensus       854 ~g~~~eA~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~e  929 (1211)
                      .|++.+|-...++.++  --| |..++..--.+|...|+.+.-...+++++..   ++|-.......++-.+...|-+++
T Consensus       116 ~g~~h~a~~~wdklL~--d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~d  193 (491)
T KOG2610|consen  116 RGKHHEAAIEWDKLLD--DYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDD  193 (491)
T ss_pred             cccccHHHHHHHHHHH--hCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchh
Confidence            3455555555555554  333 2344444445555556555555555555422   111111222234455667777777


Q ss_pred             HHHHHHHHHhCCcccCHHHHHHHHHHhhhhCCHHHHHHHHHHHHhcCCCCch-----HHHHHHHHHHHhCCChhHHHHHH
Q 000951          930 AMLVLNRMLRMRLVPTIATFTTLIHKFCKEAKFVDALKLKGTMELSGVKLDV-----VSYNVLISGLCANGDVMPAFELY 1004 (1211)
Q Consensus       930 A~~~~~~~~~~~~~p~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-----~~~~~l~~~~~~~g~~~~a~~~~ 1004 (1211)
                      |.+.-+++++.++. |..+..+++.++-..|+..|+.+....-...  -.+.     -.|.+.+-.|...+.++.|.++|
T Consensus       194 AEk~A~ralqiN~~-D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~--Wr~s~mlasHNyWH~Al~~iE~aeye~aleIy  270 (491)
T KOG2610|consen  194 AEKQADRALQINRF-DCWASHAKAHVLEMNGRHKEGKEFMYKTEDD--WRQSWMLASHNYWHTALFHIEGAEYEKALEIY  270 (491)
T ss_pred             HHHHHHhhccCCCc-chHHHHHHHHHHHhcchhhhHHHHHHhcccc--hhhhhHHHhhhhHHHHHhhhcccchhHHHHHH
Confidence            77777777776654 6777777777777777777777763321110  1111     12344444555667778888777


Q ss_pred             HH
Q 000951         1005 EE 1006 (1211)
Q Consensus      1005 ~~ 1006 (1211)
                      +.
T Consensus       271 D~  272 (491)
T KOG2610|consen  271 DR  272 (491)
T ss_pred             HH
Confidence            64

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=95.97  E-value=0.25  Score=48.50  Aligned_cols=62  Identities=11%  Similarity=0.033  Sum_probs=32.3

Q ss_pred             hhhHHHHHHHHHhhcchhhHHHHHHHHHHcCCCCCh-hHHHHHHHHHHhcCChhhHHHHHHHHHH
Q 000951          841 TNTQDAIIMGLKRIAAFQESHFVLRGMAEKGLTPKC-TQYITLINGMCRVGNFQGAFKLKDEMEA  904 (1211)
Q Consensus       841 ~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~eA~~~~~~~~~  904 (1211)
                      +..||.++--+...|+++.|.+.|+..++  ++|.. .+..+-+-++.--|+++-|.+-+-+--+
T Consensus        99 ~~vfNyLG~Yl~~a~~fdaa~eaFds~~E--LDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ  161 (297)
T COG4785          99 PEVFNYLGIYLTQAGNFDAAYEAFDSVLE--LDPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQ  161 (297)
T ss_pred             HHHHHHHHHHHHhcccchHHHHHhhhHhc--cCCcchHHHhccceeeeecCchHhhHHHHHHHHh
Confidence            44455555555555555555555555555  55542 3334444444455666666655555543

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=95.94  E-value=0.098  Score=46.65  Aligned_cols=92  Identities=11%  Similarity=0.009  Sum_probs=53.9

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhCCcccCHHHHHHHHHHhhhhCCHHHHHHHHHHHHhcCCCCc-h-H-HHHHHHHHHHhC
Q 000951          918 VRGLAHCGKVEEAMLVLNRMLRMRLVPTIATFTTLIHKFCKEAKFVDALKLKGTMELSGVKLD-V-V-SYNVLISGLCAN  994 (1211)
Q Consensus       918 ~~~~~~~g~~~eA~~~~~~~~~~~~~p~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~-~-~~~~l~~~~~~~  994 (1211)
                      +.++...|+++.|++.|.+++..-|+ ++.+|++-+.+++-+|+.++|++-+....++.-... . . +|..-+..|...
T Consensus        50 ~valaE~g~Ld~AlE~F~qal~l~P~-raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~  128 (175)
T KOG4555|consen   50 AIALAEAGDLDGALELFGQALCLAPE-RASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLL  128 (175)
T ss_pred             HHHHHhccchHHHHHHHHHHHHhccc-chHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHh
Confidence            44556667777777777777666555 666777777777777777777665554443321111 1 1 344445566666


Q ss_pred             CChhHHHHHHHHHHHc
Q 000951          995 GDVMPAFELYEEMKHK 1010 (1211)
Q Consensus       995 g~~~~a~~~~~~~~~~ 1010 (1211)
                      |+-|.|..-|+...+.
T Consensus       129 g~dd~AR~DFe~AA~L  144 (175)
T KOG4555|consen  129 GNDDAARADFEAAAQL  144 (175)
T ss_pred             CchHHHHHhHHHHHHh
Confidence            6666666666655443

>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=95.90  E-value=3.6  Score=45.28  Aligned_cols=105  Identities=18%  Similarity=0.201  Sum_probs=56.8

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHc
Q 000951          319 NELIDGHCCKGNFKEAFRLLAMMEEMGLRPNEVSYGALLNGFCKHAKFDLARSLLERMRTNGISISCIAYTSVIDGLCKC  398 (1211)
Q Consensus       319 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~l~~~~~~~~~~~~~~~~~~li~~~~~~  398 (1211)
                      +.-|.-+...|+...|.++-.+..    .||..-|-..+.+++..++|++-.++...   .   -+++-|-..+..+.+.
T Consensus       181 ~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s---k---KsPIGyepFv~~~~~~  250 (319)
T PF04840_consen  181 NDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS---K---KSPIGYEPFVEACLKY  250 (319)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC---C---CCCCChHHHHHHHHHC
Confidence            334444555666666665554442    35666666666666666666655543221   1   1224456666666666


Q ss_pred             CCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHH
Q 000951          399 GLLDEAMQLFNKMFKDGLNPDLITFSVLINGFCKVGMTRKAKAVL  443 (1211)
Q Consensus       399 g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~  443 (1211)
                      |...+|..+...+          .+..-+..|.+.|++.+|.+.-
T Consensus       251 ~~~~eA~~yI~k~----------~~~~rv~~y~~~~~~~~A~~~A  285 (319)
T PF04840_consen  251 GNKKEASKYIPKI----------PDEERVEMYLKCGDYKEAAQEA  285 (319)
T ss_pred             CCHHHHHHHHHhC----------ChHHHHHHHHHCCCHHHHHHHH
Confidence            6666666655552          1234455566666666665543

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=95.83  E-value=0.45  Score=53.23  Aligned_cols=58  Identities=14%  Similarity=0.179  Sum_probs=32.3

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHhCCccc-CHHHHHHHHHHhhhhCCHHHHHHHHHHH
Q 000951          915 SAMVRGLAHCGKVEEAMLVLNRMLRMRLVP-TIATFTTLIHKFCKEAKFVDALKLKGTM  972 (1211)
Q Consensus       915 ~~l~~~~~~~g~~~eA~~~~~~~~~~~~~p-~~~~~~~L~~~~~~~g~~~~A~~~~~~~  972 (1211)
                      ..++....+.|+.+||++.++.+++..|.- +..+...|+.++...+.+.++..++...
T Consensus       263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kY  321 (539)
T PF04184_consen  263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKY  321 (539)
T ss_pred             HHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence            345555556666666666666665443221 3345555666666666666666655544

The molecular function of this protein is uncertain.

>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.80  E-value=0.88  Score=45.80  Aligned_cols=21  Identities=19%  Similarity=0.123  Sum_probs=11.2

Q ss_pred             HHHHhcCChHHHHHHHHHHHH
Q 000951          779 LGFCETGMLEVGFKFLKKMIA  799 (1211)
Q Consensus       779 ~~~~~~g~~~~A~~~~~~~~~  799 (1211)
                      ..|.++|..+-|-..++++-+
T Consensus        99 ~lY~E~GspdtAAmaleKAak  119 (308)
T KOG1585|consen   99 ELYVECGSPDTAAMALEKAAK  119 (308)
T ss_pred             HHHHHhCCcchHHHHHHHHHH
Confidence            455555655555555555443

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=95.73  E-value=0.19  Score=48.62  Aligned_cols=62  Identities=15%  Similarity=0.173  Sum_probs=26.1

Q ss_pred             HHHHHHHHHhcCChhhHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 000951          879 YITLINGMCRVGNFQGAFKLKDEMEALGISSSDVAESAMVRGLAHCGKVEEAMLVLNRMLRMR  941 (1211)
Q Consensus       879 ~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~  941 (1211)
                      |..-+.+..+.+.|+.|+.--.++++.+ +....+...-+.+|.+..++++|+.-|+++++.+
T Consensus       137 y~Nraaa~iKl~k~e~aI~dcsKaiel~-pty~kAl~RRAeayek~ek~eealeDyKki~E~d  198 (271)
T KOG4234|consen  137 YSNRAAALIKLRKWESAIEDCSKAIELN-PTYEKALERRAEAYEKMEKYEEALEDYKKILESD  198 (271)
T ss_pred             HhhhHHHHHHhhhHHHHHHHHHhhHhcC-chhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC
Confidence            3333344444444444444444444332 2222222333444444444555555555555544

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=95.67  E-value=3.1  Score=42.92  Aligned_cols=55  Identities=13%  Similarity=0.025  Sum_probs=32.2

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhCCccc--CHHHHHHHHHHhhhhCCHHHHHHHHHH
Q 000951          917 MVRGLAHCGKVEEAMLVLNRMLRMRLVP--TIATFTTLIHKFCKEAKFVDALKLKGT  971 (1211)
Q Consensus       917 l~~~~~~~g~~~eA~~~~~~~~~~~~~p--~~~~~~~L~~~~~~~g~~~~A~~~~~~  971 (1211)
                      ++.-|.+.|.+.-|..-++.+++.-+.-  ...++-.|..+|...|-.++|...-+-
T Consensus       173 IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~v  229 (254)
T COG4105         173 IARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKV  229 (254)
T ss_pred             HHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHH
Confidence            4556677777777777777777653221  123444555566666777766665433

>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.67  E-value=2.7  Score=42.20  Aligned_cols=63  Identities=6%  Similarity=0.021  Sum_probs=35.3

Q ss_pred             HHHHHHhc-CCHHHHHHHHHHHHhCC--ccc---CHHHHHHHHHHhhhhCCHHHHHHHHHHHHhcCCCC
Q 000951          917 MVRGLAHC-GKVEEAMLVLNRMLRMR--LVP---TIATFTTLIHKFCKEAKFVDALKLKGTMELSGVKL  979 (1211)
Q Consensus       917 l~~~~~~~-g~~~eA~~~~~~~~~~~--~~p---~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~p  979 (1211)
                      ++.+|... .+++.|+..|+++-+.-  -+.   -..++...+..-...|+|.+|+.+|+++....+..
T Consensus       119 iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n  187 (288)
T KOG1586|consen  119 IAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDN  187 (288)
T ss_pred             HHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            34445433 55667777777665521  111   12344445555566778888888887776554433

>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=95.66  E-value=4.5  Score=48.74  Aligned_cols=243  Identities=14%  Similarity=0.084  Sum_probs=116.6

Q ss_pred             cCChHHHHHHHHHHHH-------CCCCCCHHHHHHHHHHHHhcC-----ChHHHHHHHHHHHHcCCCCCHhhHHHHHHHH
Q 000951          749 KKDLLMCSMLLNTMKM-------EGLLPDKLTCHSLILGFCETG-----MLEVGFKFLKKMIAEGTMVDCFTFNVLMRKC  816 (1211)
Q Consensus       749 ~g~~~~A~~~~~~~~~-------~g~~p~~~~~~~l~~~~~~~g-----~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~  816 (1211)
                      ..|.+.|+.+|+.+.+       .|   .....+.+..+|.+..     +.+.|+.++.++...|.+ +  ....++.+|
T Consensus       262 ~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g~~-~--a~~~lg~~~  335 (552)
T KOG1550|consen  262 TQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELGNP-D--AQYLLGVLY  335 (552)
T ss_pred             cccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhcCCc-h--HHHHHHHHH
Confidence            3445555555555443       33   2223334444554432     445566666666654322 2  222333333


Q ss_pred             Hhc---CcHHHHHHHHHHHHHCCCCCChhhHHHHHHHHH----hhcchhhHHHHHHHHHHcCCCCChhHHHHHHHHHHhc
Q 000951          817 CEA---GEMGKAFDLFNIMNMLGVVPDTNTQDAIIMGLK----RIAAFQESHFVLRGMAEKGLTPKCTQYITLINGMCRV  889 (1211)
Q Consensus       817 ~~~---g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~g~~~eA~~~~~~~~~~g~~p~~~~~~~l~~~~~~~  889 (1211)
                      ...   .++..|.++|..+.+.|.   ...+..++..|.    ..-+..+|..+|+++.+.| .|...........+.. 
T Consensus       336 ~~g~~~~d~~~A~~yy~~Aa~~G~---~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-  410 (552)
T KOG1550|consen  336 ETGTKERDYRRAFEYYSLAAKAGH---ILAIYRLALCYELGLGVERNLELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-  410 (552)
T ss_pred             HcCCccccHHHHHHHHHHHHHcCC---hHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-
Confidence            322   245566666666665442   222223333222    2235566777777776655 2222111222222223 


Q ss_pred             CChhhHHHHHHHHHHcCCCCchHHHHHHHHHH-----Hh--cCCHHHHHHHHHHHHhCCcccCHHHHHHHHHHhhhh---
Q 000951          890 GNFQGAFKLKDEMEALGISSSDVAESAMVRGL-----AH--CGKVEEAMLVLNRMLRMRLVPTIATFTTLIHKFCKE---  959 (1211)
Q Consensus       890 g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~-----~~--~g~~~eA~~~~~~~~~~~~~p~~~~~~~L~~~~~~~---  959 (1211)
                      +.++.+.-.+..+.+.+.+.....-..+.+..     ..  ..+.+.+...+.++...+   +......|+..|...   
T Consensus       411 ~~~~~~~~~~~~~a~~g~~~~q~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g---~~~a~~~lgd~y~~g~g~  487 (552)
T KOG1550|consen  411 GRYDTALALYLYLAELGYEVAQSNAAYLLDQSEEDLFSRGVISTLERAFSLYSRAAAQG---NADAILKLGDYYYYGLGT  487 (552)
T ss_pred             ccccHHHHHHHHHHHhhhhHHhhHHHHHHHhccccccccccccchhHHHHHHHHHHhcc---CHHHHhhhcceeeecCCC
Confidence            66666666666665554322211111111111     11  234667777777766654   666777777777654   


Q ss_pred             -CCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhC-C--ChhHHHHHHHHHHH
Q 000951          960 -AKFVDALKLKGTMELSGVKLDVVSYNVLISGLCAN-G--DVMPAFELYEEMKH 1009 (1211)
Q Consensus       960 -g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-g--~~~~a~~~~~~~~~ 1009 (1211)
                       .+++.|...|......+    ......++..+... |  .+..|.+.+....+
T Consensus       488 ~~d~~~a~~~y~~a~~~~----~~~~~nlg~~~e~g~g~~~~~~a~~~~~~~~~  537 (552)
T KOG1550|consen  488 GRDPEKAAAQYARASEQG----AQALFNLGYMHEHGEGIKVLHLAKRYYDQASE  537 (552)
T ss_pred             CCChHHHHHHHHHHHHhh----hHHHhhhhhHHhcCcCcchhHHHHHHHHHHHh
Confidence             34777777766544432    44555556554322 1  14666666665544

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=95.60  E-value=0.32  Score=45.26  Aligned_cols=66  Identities=17%  Similarity=0.271  Sum_probs=39.9

Q ss_pred             hHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCC---chHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCcc
Q 000951          877 TQYITLINGMCRVGNFQGAFKLKDEMEALGISS---SDVAESAMVRGLAHCGKVEEAMLVLNRMLRMRLV  943 (1211)
Q Consensus       877 ~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~  943 (1211)
                      ..+..-+....+.|+|++|.+.|+.+... .|.   ...+-..++.+|.+.|++++|+..+++.+++.|.
T Consensus        11 ~~ly~~a~~~l~~~~Y~~A~~~le~L~~r-yP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~   79 (142)
T PF13512_consen   11 QELYQEAQEALQKGNYEEAIKQLEALDTR-YPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPT   79 (142)
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHhc-CCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence            33444455555667777777777766543 121   2334556667777777777777777777776654

>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=95.59  E-value=7.6  Score=46.81  Aligned_cols=283  Identities=12%  Similarity=0.026  Sum_probs=126.2

Q ss_pred             HHHHHHHHHHHHhCCCCCCHHHHHHHHHH-----HHhCCChHHHHHHHHHHHH-------cCCCCCCHHHHHHHHHHHHH
Q 000951          611 LWEAIVLLDEMVQFNLLPDRYTYTILLAG-----LCRKGKVVSALLFFEKVVS-------KRTFSPNNVMFTCLVDGLFK  678 (1211)
Q Consensus       611 ~~~A~~~~~~m~~~~~~p~~~~~~~li~~-----~~~~g~~~~A~~~~~~~~~-------~~~~~p~~~~~~~l~~~~~~  678 (1211)
                      ...|.+.++...+.|   +...-..+...     +....+.+.|+.+|+.+.+       .+    .......+..+|.+
T Consensus       228 ~~~a~~~~~~~a~~g---~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~----~~~a~~~lg~~Y~~  300 (552)
T KOG1550|consen  228 LSEAFKYYREAAKLG---HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG----LPPAQYGLGRLYLQ  300 (552)
T ss_pred             hhHHHHHHHHHHhhc---chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc----CCccccHHHHHHhc
Confidence            344555555555544   22322222222     2334566666666666655       22    22233445555544


Q ss_pred             cC-----CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh-cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH----c
Q 000951          679 AG-----QSKAAMHISKIMDKEGVYPDTIAFNAVMDGFSR-MGNMMMANDLLSTMRSRKLCPSLATYNILLHGYS----K  748 (1211)
Q Consensus       679 ~g-----~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~----~  748 (1211)
                      ..     +.+.|..++....+.| .|+....-..+..... ..+...|..+|......|.   ..++..+..+|.    -
T Consensus       301 g~~~~~~d~~~A~~~~~~aA~~g-~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~---~~A~~~la~~y~~G~gv  376 (552)
T KOG1550|consen  301 GLGVEKIDYEKALKLYTKAAELG-NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGH---ILAIYRLALCYELGLGV  376 (552)
T ss_pred             CCCCccccHHHHHHHHHHHHhcC-CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCC---hHHHHHHHHHHHhCCCc
Confidence            32     4556666666666655 2333222211111111 1345566666666665542   223333333222    2


Q ss_pred             cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCcHHHHHHH
Q 000951          749 KKDLLMCSMLLNTMKMEGLLPDKLTCHSLILGFCETGMLEVGFKFLKKMIAEGTMVDCFTFNVLMRKCCEAGEMGKAFDL  828 (1211)
Q Consensus       749 ~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~  828 (1211)
                      ..+.+.|..+|+++.+.| .|....-...+..+.. +.++.+.-.+..+...+.+... +-...   +...+.       
T Consensus       377 ~r~~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g~~~~q-~~a~~---l~~~~~-------  443 (552)
T KOG1550|consen  377 ERNLELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAELGYEVAQ-SNAAY---LLDQSE-------  443 (552)
T ss_pred             CCCHHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhhhhHHh-hHHHH---HHHhcc-------
Confidence            345666777777766655 2221111112222322 5555555555555443322110 00000   000000       


Q ss_pred             HHHHHHCCCCCChhhHHHHHHHHHhhcchhhHHHHHHHHHHcCCCCChhHHHHHHHHHHhc----CChhhHHHHHHHHHH
Q 000951          829 FNIMNMLGVVPDTNTQDAIIMGLKRIAAFQESHFVLRGMAEKGLTPKCTQYITLINGMCRV----GNFQGAFKLKDEMEA  904 (1211)
Q Consensus       829 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~g~~p~~~~~~~l~~~~~~~----g~~~eA~~~~~~~~~  904 (1211)
                            ..+.++.           ...+.+.+...+.+....|   +......+++.|...    .+++.|...|..+..
T Consensus       444 ------~~~~~~~-----------~~~~~~~~~~~~~~a~~~g---~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~  503 (552)
T KOG1550|consen  444 ------EDLFSRG-----------VISTLERAFSLYSRAAAQG---NADAILKLGDYYYYGLGTGRDPEKAAAQYARASE  503 (552)
T ss_pred             ------ccccccc-----------cccchhHHHHHHHHHHhcc---CHHHHhhhcceeeecCCCCCChHHHHHHHHHHHH
Confidence                  0000000           0112333444444433322   334445555555433    246677777777765


Q ss_pred             cCCCCchHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCc
Q 000951          905 LGISSSDVAESAMVRGLAH----CGKVEEAMLVLNRMLRMRL  942 (1211)
Q Consensus       905 ~~~~~~~~~~~~l~~~~~~----~g~~~eA~~~~~~~~~~~~  942 (1211)
                      .+    ......++.++..    .. +..|.++|+++.+.+.
T Consensus       504 ~~----~~~~~nlg~~~e~g~g~~~-~~~a~~~~~~~~~~~~  540 (552)
T KOG1550|consen  504 QG----AQALFNLGYMHEHGEGIKV-LHLAKRYYDQASEEDS  540 (552)
T ss_pred             hh----hHHHhhhhhHHhcCcCcch-hHHHHHHHHHHHhcCc
Confidence            54    4444555555532    23 6788888888887653

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=95.56  E-value=1.2  Score=43.87  Aligned_cols=179  Identities=12%  Similarity=0.061  Sum_probs=99.0

Q ss_pred             hcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChHHH
Q 000951          713 RMGNMMMANDLLSTMRSRKLCPS-LATYNILLHGYSKKKDLLMCSMLLNTMKMEGLLPD-KLTCHSLILGFCETGMLEVG  790 (1211)
Q Consensus       713 ~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~A  790 (1211)
                      ..|-+.-|+.=|.+..  .+.|+ +..+|.|+--+...|+++.|.+.|+...+  +.|. ..+...-+.++.-.|++.-|
T Consensus        77 SlGL~~LAR~DftQaL--ai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~E--LDp~y~Ya~lNRgi~~YY~gR~~LA  152 (297)
T COG4785          77 SLGLRALARNDFSQAL--AIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLE--LDPTYNYAHLNRGIALYYGGRYKLA  152 (297)
T ss_pred             hhhHHHHHhhhhhhhh--hcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhc--cCCcchHHHhccceeeeecCchHhh
Confidence            3455555555566655  35664 67788888888888888888888888887  5552 23333344455567888888


Q ss_pred             HHHHHHHHHcCCCCCH--hhHHHHHHHHHhcCcHHHHHHHH-HHHHHCCCCCChhhHHHHHHHHHhhcchhhHHHHHHHH
Q 000951          791 FKFLKKMIAEGTMVDC--FTFNVLMRKCCEAGEMGKAFDLF-NIMNMLGVVPDTNTQDAIIMGLKRIAAFQESHFVLRGM  867 (1211)
Q Consensus       791 ~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~  867 (1211)
                      .+-+.+--.... .|+  ..|-.+.   ...-+..+|..-+ ++...    .|..-|..-+-.|. .|+..+ ..+++++
T Consensus       153 q~d~~~fYQ~D~-~DPfR~LWLYl~---E~k~dP~~A~tnL~qR~~~----~d~e~WG~~iV~~y-LgkiS~-e~l~~~~  222 (297)
T COG4785         153 QDDLLAFYQDDP-NDPFRSLWLYLN---EQKLDPKQAKTNLKQRAEK----SDKEQWGWNIVEFY-LGKISE-ETLMERL  222 (297)
T ss_pred             HHHHHHHHhcCC-CChHHHHHHHHH---HhhCCHHHHHHHHHHHHHh----ccHhhhhHHHHHHH-HhhccH-HHHHHHH
Confidence            877777666432 222  2222222   2223455665433 34332    33334433333222 122221 2233333


Q ss_pred             HHcCCCCC------hhHHHHHHHHHHhcCChhhHHHHHHHHHHc
Q 000951          868 AEKGLTPK------CTQYITLINGMCRVGNFQGAFKLKDEMEAL  905 (1211)
Q Consensus       868 ~~~g~~p~------~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~  905 (1211)
                      .....+..      .++|..|+.-+...|+.++|..+|+-++..
T Consensus       223 ~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaian  266 (297)
T COG4785         223 KADATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVAN  266 (297)
T ss_pred             HhhccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence            33111110      167777888888888888888888877644

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=95.55  E-value=0.22  Score=51.56  Aligned_cols=90  Identities=13%  Similarity=0.145  Sum_probs=55.1

Q ss_pred             HhhcchhhHHHHHHHHHHcCCCCC----hhHHHHHHHHHHhcCChhhHHHHHHHHHHc-C-CCCchHHHHHHHHHHHhcC
Q 000951          852 KRIAAFQESHFVLRGMAEKGLTPK----CTQYITLINGMCRVGNFQGAFKLKDEMEAL-G-ISSSDVAESAMVRGLAHCG  925 (1211)
Q Consensus       852 ~~~g~~~eA~~~~~~~~~~g~~p~----~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~-~-~~~~~~~~~~l~~~~~~~g  925 (1211)
                      .+.|++.+|...|..-++  .-|+    ..++..|+.++..+|++++|...|..+.+. + .+.-+..+..++....+.|
T Consensus       152 ~ksgdy~~A~~~F~~fi~--~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~  229 (262)
T COG1729         152 YKSGDYAEAEQAFQAFIK--KYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLG  229 (262)
T ss_pred             HHcCCHHHHHHHHHHHHH--cCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhc
Confidence            345566666666666666  2232    255666777777777777777777776532 1 1223456666677777777


Q ss_pred             CHHHHHHHHHHHHhCCcc
Q 000951          926 KVEEAMLVLNRMLRMRLV  943 (1211)
Q Consensus       926 ~~~eA~~~~~~~~~~~~~  943 (1211)
                      +.++|...|+++++.-|.
T Consensus       230 ~~d~A~atl~qv~k~YP~  247 (262)
T COG1729         230 NTDEACATLQQVIKRYPG  247 (262)
T ss_pred             CHHHHHHHHHHHHHHCCC
Confidence            777777777777665433

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=95.54  E-value=0.15  Score=52.75  Aligned_cols=93  Identities=13%  Similarity=0.049  Sum_probs=62.0

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhCCccc--CHHHHHHHHHHhhhhCCHHHHHHHHHHHH-hcCCCCch-HHHHHHHHHHHh
Q 000951          918 VRGLAHCGKVEEAMLVLNRMLRMRLVP--TIATFTTLIHKFCKEAKFVDALKLKGTME-LSGVKLDV-VSYNVLISGLCA  993 (1211)
Q Consensus       918 ~~~~~~~g~~~eA~~~~~~~~~~~~~p--~~~~~~~L~~~~~~~g~~~~A~~~~~~~~-~~~~~p~~-~~~~~l~~~~~~  993 (1211)
                      +.-+...|++.+|...|...++..|..  .+.++..||.++..+|++++|..+|..+. ..+-.|.. .++.-|+.+...
T Consensus       148 A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~  227 (262)
T COG1729         148 ALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGR  227 (262)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHH
Confidence            334556677777777777777765442  34566777778888888888777766544 33333332 467777777777


Q ss_pred             CCChhHHHHHHHHHHHc
Q 000951          994 NGDVMPAFELYEEMKHK 1010 (1211)
Q Consensus       994 ~g~~~~a~~~~~~~~~~ 1010 (1211)
                      .|+.++|-..++++.++
T Consensus       228 l~~~d~A~atl~qv~k~  244 (262)
T COG1729         228 LGNTDEACATLQQVIKR  244 (262)
T ss_pred             hcCHHHHHHHHHHHHHH
Confidence            77888887777777654

>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.48  E-value=2.4  Score=42.60  Aligned_cols=34  Identities=18%  Similarity=0.090  Sum_probs=19.4

Q ss_pred             HHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCcHHHHHHHH
Q 000951          781 FCETGMLEVGFKFLKKMIAEGTMVDCFTFNVLMRKCCEAGEMGKAFDLF  829 (1211)
Q Consensus       781 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~  829 (1211)
                      |.+.++.++|...++.+++               +|...|++..|-...
T Consensus        83 cykk~~~~eAv~cL~~aie---------------Iyt~~Grf~~aAk~~  116 (288)
T KOG1586|consen   83 CYKKVDPEEAVNCLEKAIE---------------IYTDMGRFTMAAKHH  116 (288)
T ss_pred             HhhccChHHHHHHHHHHHH---------------HHHhhhHHHHHHhhh
Confidence            3455566666666665544               455666665554443

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=95.43  E-value=2.3  Score=47.09  Aligned_cols=32  Identities=16%  Similarity=0.111  Sum_probs=14.5

Q ss_pred             hHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcC
Q 000951          787 LEVGFKFLKKMIAEGTMVDCFTFNVLMRKCCEAG  820 (1211)
Q Consensus       787 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  820 (1211)
                      .++|+..|.+.-+  ..|+...-.+++..+...|
T Consensus       242 ldkAi~~Y~kgFe--~~~~~Y~GIN~AtLL~~~g  273 (374)
T PF13281_consen  242 LDKAIEWYRKGFE--IEPDYYSGINAATLLMLAG  273 (374)
T ss_pred             HHHHHHHHHHHHc--CCccccchHHHHHHHHHcC
Confidence            4555556655555  2344433333333333333

>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]

Probab=95.31  E-value=0.064  Score=55.96  Aligned_cols=88  Identities=15%  Similarity=0.110  Sum_probs=42.9

Q ss_pred             HHHHHhcCcHHHHHHHHHHHHHCCCCC-ChhhHHHHHHHHHhhcchhhHHHHHHHHHHcCCCCC-hhHHHHHHHHHHhcC
Q 000951          813 MRKCCEAGEMGKAFDLFNIMNMLGVVP-DTNTQDAIIMGLKRIAAFQESHFVLRGMAEKGLTPK-CTQYITLINGMCRVG  890 (1211)
Q Consensus       813 ~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g  890 (1211)
                      ++-|.++|.|++|++.|.+...  +.| +++++.+-+.+|.+..++..|+.-...++.  ++-. ..+|..-+.+-...|
T Consensus       104 GN~yFKQgKy~EAIDCYs~~ia--~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~Aia--Ld~~Y~KAYSRR~~AR~~Lg  179 (536)
T KOG4648|consen  104 GNTYFKQGKYEEAIDCYSTAIA--VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIA--LDKLYVKAYSRRMQARESLG  179 (536)
T ss_pred             hhhhhhccchhHHHHHhhhhhc--cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHH--hhHHHHHHHHHHHHHHHHHh
Confidence            3445555555555555555443  223 455555555555555555555555555443  2211 133444444444444


Q ss_pred             ChhhHHHHHHHHHH
Q 000951          891 NFQGAFKLKDEMEA  904 (1211)
Q Consensus       891 ~~~eA~~~~~~~~~  904 (1211)
                      ..+||.+-++.+++
T Consensus       180 ~~~EAKkD~E~vL~  193 (536)
T KOG4648|consen  180 NNMEAKKDCETVLA  193 (536)
T ss_pred             hHHHHHHhHHHHHh
Confidence            55555555555444

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=95.29  E-value=1.3  Score=46.38  Aligned_cols=154  Identities=13%  Similarity=0.086  Sum_probs=89.9

Q ss_pred             HHHhhcchhhHHHHHHHHHHcCCCCCh-hHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHH
Q 000951          850 GLKRIAAFQESHFVLRGMAEKGLTPKC-TQYITLINGMCRVGNFQGAFKLKDEMEALGISSSDVAESAMVRGLAHCGKVE  928 (1211)
Q Consensus       850 ~~~~~g~~~eA~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~  928 (1211)
                      .....|++.+|...|+.+++  ..|+. ..-..++.+|...|+.++|..++..+...-..........-+..+.+.....
T Consensus       143 ~~~~~e~~~~a~~~~~~al~--~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~  220 (304)
T COG3118         143 ELIEAEDFGEAAPLLKQALQ--AAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATP  220 (304)
T ss_pred             hhhhccchhhHHHHHHHHHH--hCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCC
Confidence            34567888888888888887  66643 6677888888889999988888887742211111111122234444444444


Q ss_pred             HHHHHHHHHHhCCcccCHHHHHHHHHHhhhhCCHHHHHHHHHHHHhcCC-CCchHHHHHHHHHHHhCCChhH-HHHHHHH
Q 000951          929 EAMLVLNRMLRMRLVPTIATFTTLIHKFCKEAKFVDALKLKGTMELSGV-KLDVVSYNVLISGLCANGDVMP-AFELYEE 1006 (1211)
Q Consensus       929 eA~~~~~~~~~~~~~p~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~-~p~~~~~~~l~~~~~~~g~~~~-a~~~~~~ 1006 (1211)
                      +..++-++. ..+|. |...-..|+..+...|+.++|.+.+-.+..... .-|...-..++..+..-|.-|. +.+.+++
T Consensus       221 ~~~~l~~~~-aadPd-d~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~Dp~~~~~RRk  298 (304)
T COG3118         221 EIQDLQRRL-AADPD-DVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPADPLVLAYRRK  298 (304)
T ss_pred             CHHHHHHHH-HhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence            444433322 23333 667777777777777888887775433332211 2244566667776666664444 3344444


Q ss_pred             H
Q 000951         1007 M 1007 (1211)
Q Consensus      1007 ~ 1007 (1211)
                      +
T Consensus       299 L  299 (304)
T COG3118         299 L  299 (304)
T ss_pred             H
Confidence            4

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=95.28  E-value=0.15  Score=49.28  Aligned_cols=89  Identities=16%  Similarity=0.115  Sum_probs=42.8

Q ss_pred             HHHhcCChhhHHHHHHHHHHcCCCCc-----hHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCcccCHHHHHHHHHHhhhh
Q 000951          885 GMCRVGNFQGAFKLKDEMEALGISSS-----DVAESAMVRGLAHCGKVEEAMLVLNRMLRMRLVPTIATFTTLIHKFCKE  959 (1211)
Q Consensus       885 ~~~~~g~~~eA~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~p~~~~~~~L~~~~~~~  959 (1211)
                      -++..|++++|..-|..+++. .++.     ...|..-+.++.+.+.++.|++-..++++++|. ...++..-+.+|-+.
T Consensus       104 ~~F~ngdyeeA~skY~~Ale~-cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pt-y~kAl~RRAeayek~  181 (271)
T KOG4234|consen  104 ELFKNGDYEEANSKYQEALES-CPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPT-YEKALERRAEAYEKM  181 (271)
T ss_pred             HhhhcccHHHHHHHHHHHHHh-CccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCch-hHHHHHHHHHHHHhh
Confidence            344455555555555555443 1221     112333344555555555555555555555543 344444445555555


Q ss_pred             CCHHHHHHHHHHHHhc
Q 000951          960 AKFVDALKLKGTMELS  975 (1211)
Q Consensus       960 g~~~~A~~~~~~~~~~  975 (1211)
                      .++++|++-|+.+.+.
T Consensus       182 ek~eealeDyKki~E~  197 (271)
T KOG4234|consen  182 EKYEEALEDYKKILES  197 (271)
T ss_pred             hhHHHHHHHHHHHHHh
Confidence            5555555555544443

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=95.28  E-value=3.6  Score=51.22  Aligned_cols=50  Identities=20%  Similarity=0.248  Sum_probs=21.7

Q ss_pred             HHHHhcCChhhHHHHHHHHHHcCCCCchHHH---HHHHHHHHhcCCHHHHHHHHHHH
Q 000951          884 NGMCRVGNFQGAFKLKDEMEALGISSSDVAE---SAMVRGLAHCGKVEEAMLVLNRM  937 (1211)
Q Consensus       884 ~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~---~~l~~~~~~~g~~~eA~~~~~~~  937 (1211)
                      .+|..+|+|.+|+.+-.++.    .+-....   ..|+.-+...++.-+|-++....
T Consensus       973 ~a~~~~~dWr~~l~~a~ql~----~~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~ 1025 (1265)
T KOG1920|consen  973 KAYKECGDWREALSLAAQLS----EGKDELVILAEELVSRLVEQRKHYEAAKILLEY 1025 (1265)
T ss_pred             HHHHHhccHHHHHHHHHhhc----CCHHHHHHHHHHHHHHHHHcccchhHHHHHHHH
Confidence            34444555555555544432    1111111   33444445555555555554433

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=95.27  E-value=0.88  Score=43.85  Aligned_cols=66  Identities=20%  Similarity=0.312  Sum_probs=36.5

Q ss_pred             HHHHHHHHhhcchhhHHHHHHHHHHcCCCCC-hhHHHHHHHHHHhcCChhhHHHHHHHHH-----HcCCCCchH
Q 000951          845 DAIIMGLKRIAAFQESHFVLRGMAEKGLTPK-CTQYITLINGMCRVGNFQGAFKLKDEME-----ALGISSSDV  912 (1211)
Q Consensus       845 ~~l~~~~~~~g~~~eA~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~eA~~~~~~~~-----~~~~~~~~~  912 (1211)
                      ..++..+...|++++|+.+++.++.  .+|. ...|..++.++...|+..+|.+.|+++.     +.|++|++.
T Consensus        66 ~~l~~~~~~~~~~~~a~~~~~~~l~--~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~  137 (146)
T PF03704_consen   66 ERLAEALLEAGDYEEALRLLQRALA--LDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPE  137 (146)
T ss_dssp             HHHHHHHHHTT-HHHHHHHHHHHHH--HSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HH
T ss_pred             HHHHHHHHhccCHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHH
Confidence            3445555566666666666666666  6663 3566666666666666666666666653     235555544

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>KOG1258 consensus mRNA processing protein [RNA processing and modification]

Probab=95.19  E-value=8.2  Score=44.73  Aligned_cols=183  Identities=13%  Similarity=0.054  Sum_probs=113.7

Q ss_pred             hhhHHHHHHHHHhhcchhhHHHHHHHHHHcCCCCC---hhHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCchHHHHHH
Q 000951          841 TNTQDAIIMGLKRIAAFQESHFVLRGMAEKGLTPK---CTQYITLINGMCRVGNFQGAFKLKDEMEALGISSSDVAESAM  917 (1211)
Q Consensus       841 ~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~g~~p~---~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~l  917 (1211)
                      ..+|..-+.--...|.++....+|+..+-    |-   ...|...+.-....|+.+-|-..+.+..+...+..+.+--.-
T Consensus       297 l~nw~~yLdf~i~~g~~~~~~~l~ercli----~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~  372 (577)
T KOG1258|consen  297 LKNWRYYLDFEITLGDFSRVFILFERCLI----PCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLE  372 (577)
T ss_pred             HHHHHHHhhhhhhcccHHHHHHHHHHHHh----HHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHH
Confidence            55677667666778888888888888764    21   144555555555668888888888777765444444444333


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhCCcccCHHHHHHHHHHhhhhCCHHHHH---HHHHHHHhcCCCCchH--HHHHHHH-HH
Q 000951          918 VRGLAHCGKVEEAMLVLNRMLRMRLVPTIATFTTLIHKFCKEAKFVDAL---KLKGTMELSGVKLDVV--SYNVLIS-GL  991 (1211)
Q Consensus       918 ~~~~~~~g~~~eA~~~~~~~~~~~~~p~~~~~~~L~~~~~~~g~~~~A~---~~~~~~~~~~~~p~~~--~~~~l~~-~~  991 (1211)
                      +......|++..|..+++++.+.-|. ...+-..-+....+.|+.+.+.   .++.........+...  .+..... .+
T Consensus       373 a~f~e~~~n~~~A~~~lq~i~~e~pg-~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~  451 (577)
T KOG1258|consen  373 ARFEESNGNFDDAKVILQRIESEYPG-LVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRY  451 (577)
T ss_pred             HHHHHhhccHHHHHHHHHHHHhhCCc-hhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHH
Confidence            44455678899999999988775422 3333344455667788888887   4544443332223211  2233333 45


Q ss_pred             HhCCChhHHHHHHHHHHHcCCccCh-hhHHHHHHHHHhcc
Q 000951          992 CANGDVMPAFELYEEMKHKGLCPNS-TTYSVLIDAISKKE 1030 (1211)
Q Consensus       992 ~~~g~~~~a~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~~ 1030 (1211)
                      .-.++.+.|..++.++.+  ..|+. .-|.++++-....+
T Consensus       452 ~i~~d~~~a~~~l~~~~~--~~~~~k~~~~~~~~~~~~~~  489 (577)
T KOG1258|consen  452 KIREDADLARIILLEAND--ILPDCKVLYLELIRFELIQP  489 (577)
T ss_pred             HHhcCHHHHHHHHHHhhh--cCCccHHHHHHHHHHHHhCC
Confidence            567888888888888865  34544 67777776654443

>KOG2610 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.07  E-value=0.43  Score=50.05  Aligned_cols=153  Identities=10%  Similarity=-0.045  Sum_probs=83.1

Q ss_pred             ccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHH----HHHHHHhcCcHH
Q 000951          748 KKKDLLMCSMLLNTMKMEGLLPDKLTCHSLILGFCETGMLEVGFKFLKKMIAEGTMVDCFTFNV----LMRKCCEAGEMG  823 (1211)
Q Consensus       748 ~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~----l~~~~~~~g~~~  823 (1211)
                      ..|+..+|...++++++. .+.|..++...-.+|...|+.+.-...+++++.. ..+|...|..    +.-++..+|-++
T Consensus       115 ~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~  192 (491)
T KOG2610|consen  115 GRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYD  192 (491)
T ss_pred             ccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccch
Confidence            345566666666666652 3335556655556666666666666666666553 2233222222    222445667777


Q ss_pred             HHHHHHHHHHHCCCCCChhhHHHHHHHHHhhcchhhHHHHHHHHHHcCCCCC---hhHHHHHHHHHHhcCChhhHHHHHH
Q 000951          824 KAFDLFNIMNMLGVVPDTNTQDAIIMGLKRIAAFQESHFVLRGMAEKGLTPK---CTQYITLINGMCRVGNFQGAFKLKD  900 (1211)
Q Consensus       824 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~g~~p~---~~~~~~l~~~~~~~g~~~eA~~~~~  900 (1211)
                      +|.+.-++..+.+ +-|..+--+...++...|++.|+.+...+-.+.=....   ...|--.+-.+...+.++.|+++|+
T Consensus       193 dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD  271 (491)
T KOG2610|consen  193 DAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYD  271 (491)
T ss_pred             hHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHH
Confidence            7777777666543 23455555666666677777777666554321000000   0123333334445577888888887


Q ss_pred             HHH
Q 000951          901 EME  903 (1211)
Q Consensus       901 ~~~  903 (1211)
                      +-+
T Consensus       272 ~ei  274 (491)
T KOG2610|consen  272 REI  274 (491)
T ss_pred             HHH
Confidence            764

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=95.06  E-value=0.77  Score=53.83  Aligned_cols=117  Identities=16%  Similarity=0.030  Sum_probs=82.6

Q ss_pred             cCChhhHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCcc---cCHHHHHHHHHHhhhhCCHHHH
Q 000951          889 VGNFQGAFKLKDEMEALGISSSDVAESAMVRGLAHCGKVEEAMLVLNRMLRMRLV---PTIATFTTLIHKFCKEAKFVDA  965 (1211)
Q Consensus       889 ~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~---p~~~~~~~L~~~~~~~g~~~~A  965 (1211)
                      ....+.|.++++.+.+. .|........-+..+...|+.++|++.|+++++....   .....+..+++.+.-.++|++|
T Consensus       246 ~~~~~~a~~lL~~~~~~-yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A  324 (468)
T PF10300_consen  246 DVPLEEAEELLEEMLKR-YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEA  324 (468)
T ss_pred             CCCHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHH
Confidence            45677888888888765 3444444455577888889999999999987752211   1456778899999999999999


Q ss_pred             HHHHHHHHhcCCCCchHHH-HHHHHHHHhCCCh-------hHHHHHHHHH
Q 000951          966 LKLKGTMELSGVKLDVVSY-NVLISGLCANGDV-------MPAFELYEEM 1007 (1211)
Q Consensus       966 ~~~~~~~~~~~~~p~~~~~-~~l~~~~~~~g~~-------~~a~~~~~~~ 1007 (1211)
                      ...|..+....-. ....| +..+.+|...|+.       ++|.++++++
T Consensus       325 ~~~f~~L~~~s~W-Ska~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~v  373 (468)
T PF10300_consen  325 AEYFLRLLKESKW-SKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKV  373 (468)
T ss_pred             HHHHHHHHhcccc-HHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHH
Confidence            9998887765211 22334 5555577888888       7777777765

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.05  E-value=11  Score=45.37  Aligned_cols=47  Identities=11%  Similarity=0.123  Sum_probs=23.3

Q ss_pred             HHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHH
Q 000951          707 VMDGFSRMGNMMMANDLLSTMRSRKLCPSLATYNILLHGYSKKKDLLMCSM  757 (1211)
Q Consensus       707 li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~  757 (1211)
                      ++..+.+..+.+.+..+.+..-+.    ++..|..++..+.+.+..+.-.+
T Consensus       711 l~~~~~q~~d~E~~it~~~~~g~~----~p~l~~~~L~yF~~~~~i~~~~~  757 (933)
T KOG2114|consen  711 LMLYFQQISDPETVITLCERLGKE----DPSLWLHALKYFVSEESIEDCYE  757 (933)
T ss_pred             HHHHHHHhhChHHHHHHHHHhCcc----ChHHHHHHHHHHhhhcchhhHHH
Confidence            334444555555555555544322    45555555555555554443333

>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]

Probab=94.96  E-value=7.5  Score=43.02  Aligned_cols=129  Identities=16%  Similarity=0.105  Sum_probs=56.7

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 000951          668 MFTCLVDGLFKAGQSKAAMHISKIMDKEG-VYPDTIAFNAVMDGFSRMGNMMMANDLLSTMRSRKLCPSLATYNILLHGY  746 (1211)
Q Consensus       668 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~  746 (1211)
                      +|..++....+..-++.|..+|-++.+.| ..++..++++.+.-++ .|+...|..+|+.-... ++.+...-+..+.-+
T Consensus       399 v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~-f~d~~~y~~kyl~fL  476 (660)
T COG5107         399 VFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK-FPDSTLYKEKYLLFL  476 (660)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh-CCCchHHHHHHHHHH
Confidence            34444444444444555555555554444 3344444555554333 34445555555543321 111222223334444


Q ss_pred             HccCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 000951          747 SKKKDLLMCSMLLNTMKMEGLLPD--KLTCHSLILGFCETGMLEVGFKFLKKMIA  799 (1211)
Q Consensus       747 ~~~g~~~~A~~~~~~~~~~g~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  799 (1211)
                      ..-++-+.|..+|+..+.. +..+  ...|..++.--..-|+...+..+=+++..
T Consensus       477 i~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e  530 (660)
T COG5107         477 IRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE  530 (660)
T ss_pred             HHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH
Confidence            4445555555555543332 1112  23444444444444555555555444444

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=94.91  E-value=4.9  Score=50.13  Aligned_cols=158  Identities=11%  Similarity=0.099  Sum_probs=99.7

Q ss_pred             cCcHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhcchhhHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChhhHHHH
Q 000951          819 AGEMGKAFDLFNIMNMLGVVPDTNTQDAIIMGLKRIAAFQESHFVLRGMAEKGLTPKCTQYITLINGMCRVGNFQGAFKL  898 (1211)
Q Consensus       819 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~eA~~~  898 (1211)
                      .++|+.|+..+.++-       ...|.-..+.-.++|.+++|+.+|.--.+    --...|..-++-+...+.+++|.-+
T Consensus       893 L~ry~~AL~hLs~~~-------~~~~~e~~n~I~kh~Ly~~aL~ly~~~~e----~~k~i~~~ya~hL~~~~~~~~Aal~  961 (1265)
T KOG1920|consen  893 LKRYEDALSHLSECG-------ETYFPECKNYIKKHGLYDEALALYKPDSE----KQKVIYEAYADHLREELMSDEAALM  961 (1265)
T ss_pred             HHHHHHHHHHHHHcC-------ccccHHHHHHHHhcccchhhhheeccCHH----HHHHHHHHHHHHHHHhccccHHHHH
Confidence            357777777665542       22344445555678888888877643222    0114455556666678888888888


Q ss_pred             HHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCcccCHHH--HHHHHHHhhhhCCHHHHHHHHHHHHhcC
Q 000951          899 KDEMEALGISSSDVAESAMVRGLAHCGKVEEAMLVLNRMLRMRLVPTIAT--FTTLIHKFCKEAKFVDALKLKGTMELSG  976 (1211)
Q Consensus       899 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~p~~~~--~~~L~~~~~~~g~~~~A~~~~~~~~~~~  976 (1211)
                      |+..-+.         .....+|..+|+|.+|+.+..++..   .-+...  -..|..-+..+|+.-+|-++....   .
T Consensus       962 Ye~~Gkl---------ekAl~a~~~~~dWr~~l~~a~ql~~---~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~---~ 1026 (1265)
T KOG1920|consen  962 YERCGKL---------EKALKAYKECGDWREALSLAAQLSE---GKDELVILAEELVSRLVEQRKHYEAAKILLEY---L 1026 (1265)
T ss_pred             HHHhccH---------HHHHHHHHHhccHHHHHHHHHhhcC---CHHHHHHHHHHHHHHHHHcccchhHHHHHHHH---h
Confidence            8877321         1134567888999999998665432   223322  367888888999988888874332   2


Q ss_pred             CCCchHHHHHHHHHHHhCCChhHHHHHHHHH
Q 000951          977 VKLDVVSYNVLISGLCANGDVMPAFELYEEM 1007 (1211)
Q Consensus       977 ~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 1007 (1211)
                      .+|.     -....|+.+..|++|.++-...
T Consensus      1027 sd~~-----~av~ll~ka~~~~eAlrva~~~ 1052 (1265)
T KOG1920|consen 1027 SDPE-----EAVALLCKAKEWEEALRVASKA 1052 (1265)
T ss_pred             cCHH-----HHHHHHhhHhHHHHHHHHHHhc
Confidence            2342     3344566777899998876544

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=94.75  E-value=0.56  Score=43.71  Aligned_cols=83  Identities=12%  Similarity=0.015  Sum_probs=62.0

Q ss_pred             chHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCccc--CHHHHHHHHHHhhhhCCHHHHHHHHHHHHhcCCCCchH----H
Q 000951          910 SDVAESAMVRGLAHCGKVEEAMLVLNRMLRMRLVP--TIATFTTLIHKFCKEAKFVDALKLKGTMELSGVKLDVV----S  983 (1211)
Q Consensus       910 ~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~p--~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~----~  983 (1211)
                      .+..+..-+....+.|++++|.+.|+.+...-|-+  ...+...|+.+|.+.|++++|...++....+  .|++.    +
T Consensus         9 ~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirL--hP~hp~vdYa   86 (142)
T PF13512_consen    9 SPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRL--HPTHPNVDYA   86 (142)
T ss_pred             CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCCCccHH
Confidence            34455566777788999999999999988764432  5678888999999999999999999887766  66432    4


Q ss_pred             HHHHHHHHHhC
Q 000951          984 YNVLISGLCAN  994 (1211)
Q Consensus       984 ~~~l~~~~~~~  994 (1211)
                      ++..+-++...
T Consensus        87 ~Y~~gL~~~~~   97 (142)
T PF13512_consen   87 YYMRGLSYYEQ   97 (142)
T ss_pred             HHHHHHHHHHH
Confidence            55555544443

>KOG1258 consensus mRNA processing protein [RNA processing and modification]

Probab=94.74  E-value=11  Score=43.82  Aligned_cols=116  Identities=10%  Similarity=0.087  Sum_probs=64.2

Q ss_pred             ChHHHHHHHHHHHhcCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-cCCCHHHHHHH
Q 000951          505 KVCEAEDYVGHMKRIGVVPNSI-TFDCMIDGYGTLGDGLKAFSMFDEMVKLGHHPSIFTYGSLLKGLC-KGGNLKEAKRF  582 (1211)
Q Consensus       505 ~~~~A~~~~~~~~~~g~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~-~~g~~~~A~~~  582 (1211)
                      ..+.+..+++.++..  .|... -|......=.+.|..+.+.++|++-+. +++.+...+.....-++ ..|+.+.....
T Consensus        60 ~~~~~r~~y~~fL~k--yPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~-aip~SvdlW~~Y~~f~~n~~~d~~~lr~~  136 (577)
T KOG1258|consen   60 DVDALREVYDIFLSK--YPLCYGYWKKFADYEYKLGNAENSVKVFERGVQ-AIPLSVDLWLSYLAFLKNNNGDPETLRDL  136 (577)
T ss_pred             HHHHHHHHHHHHHhh--CccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-hhhhHHHHHHHHHHHHhccCCCHHHHHHH
Confidence            334445555555532  34332 344444444566677777777777665 34555555555544333 34555566666


Q ss_pred             HHHhhhC-CCC-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 000951          583 LNSLHHI-PSA-VDTVAYNTILAETCKSGNLWEAIVLLDEMVQ  623 (1211)
Q Consensus       583 ~~~~~~~-~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~  623 (1211)
                      |+.+... |.. .....|...|..-..++++.....+|++.++
T Consensus       137 fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRile  179 (577)
T KOG1258|consen  137 FERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILE  179 (577)
T ss_pred             HHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHh
Confidence            6665542 221 1344566666666667777777777777775

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=94.71  E-value=3.4  Score=43.49  Aligned_cols=154  Identities=14%  Similarity=0.068  Sum_probs=99.8

Q ss_pred             HHHHHhcCChhhHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCcccCHHHHHH---HHHHhhhh
Q 000951          883 INGMCRVGNFQGAFKLKDEMEALGISSSDVAESAMVRGLAHCGKVEEAMLVLNRMLRMRLVPTIATFTT---LIHKFCKE  959 (1211)
Q Consensus       883 ~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~p~~~~~~~---L~~~~~~~  959 (1211)
                      +......|++.+|...|+.+.... +.+..+-..++.+|...|+.++|..++..+-...   ....|..   -+..+.+.
T Consensus       141 ~~~~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~---~~~~~~~l~a~i~ll~qa  216 (304)
T COG3118         141 AKELIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQA---QDKAAHGLQAQIELLEQA  216 (304)
T ss_pred             hhhhhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCcccc---hhhHHHHHHHHHHHHHHH
Confidence            445567899999999999998763 4556777788999999999999999988743321   2222222   23344455


Q ss_pred             CCHHHHHHHHHHHHhcCCCC-chHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCc-cChhhHHHHHHHHHhcccchHHHH
Q 000951          960 AKFVDALKLKGTMELSGVKL-DVVSYNVLISGLCANGDVMPAFELYEEMKHKGLC-PNSTTYSVLIDAISKKENNLVKGE 1037 (1211)
Q Consensus       960 g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~-p~~~~~~~l~~~~~~~~~~~~~a~ 1037 (1211)
                      ....+...+-+...   .+| |...-..++..|...|+.+.|.+.+-.+..+... .+......++..+.-.|..+..+.
T Consensus       217 a~~~~~~~l~~~~a---adPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~Dp~~~  293 (304)
T COG3118         217 AATPEIQDLQRRLA---ADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPADPLVL  293 (304)
T ss_pred             hcCCCHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCCHHHH
Confidence            55554444422222   278 4557788999999999999999887665543222 233555555555555565555455


Q ss_pred             HHHHHH
Q 000951         1038 ILLKDI 1043 (1211)
Q Consensus      1038 ~~~~~l 1043 (1211)
                      .+.+.|
T Consensus       294 ~~RRkL  299 (304)
T COG3118         294 AYRRKL  299 (304)
T ss_pred             HHHHHH
Confidence            444444

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=94.48  E-value=0.98  Score=52.96  Aligned_cols=82  Identities=11%  Similarity=-0.067  Sum_probs=37.7

Q ss_pred             cHHHHHHHHHHHHHCCCCCChhhH-HHHHHHHHhhcchhhHHHHHHHHHHcC--CC-CChhHHHHHHHHHHhcCChhhHH
Q 000951          821 EMGKAFDLFNIMNMLGVVPDTNTQ-DAIIMGLKRIAAFQESHFVLRGMAEKG--LT-PKCTQYITLINGMCRVGNFQGAF  896 (1211)
Q Consensus       821 ~~~~A~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~eA~~~~~~~~~~g--~~-p~~~~~~~l~~~~~~~g~~~eA~  896 (1211)
                      ..+.|.++++.+.+.  -|+...| ..-+..+...|+.++|+..|+++....  .. .....+..++..+.-+.+|++|.
T Consensus       248 ~~~~a~~lL~~~~~~--yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~  325 (468)
T PF10300_consen  248 PLEEAEELLEEMLKR--YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAA  325 (468)
T ss_pred             CHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHH
Confidence            444555555555442  2333222 222334445555555555555444200  00 01233445555555556666666


Q ss_pred             HHHHHHHH
Q 000951          897 KLKDEMEA  904 (1211)
Q Consensus       897 ~~~~~~~~  904 (1211)
                      +.|.++.+
T Consensus       326 ~~f~~L~~  333 (468)
T PF10300_consen  326 EYFLRLLK  333 (468)
T ss_pred             HHHHHHHh
Confidence            66666554

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=94.42  E-value=7.2  Score=40.39  Aligned_cols=52  Identities=19%  Similarity=0.179  Sum_probs=29.0

Q ss_pred             hcCChHHHHHHHHHHHHCCC-CC-CHHHHHHHHHHHHccCChHHHHHHHHHHHH
Q 000951          713 RMGNMMMANDLLSTMRSRKL-CP-SLATYNILLHGYSKKKDLLMCSMLLNTMKM  764 (1211)
Q Consensus       713 ~~g~~~~A~~~~~~~~~~~~-~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  764 (1211)
                      +.|++++|...|+.+..+.+ .| ...+...++.++.+.+++++|+...++.+.
T Consensus        46 ~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~   99 (254)
T COG4105          46 QKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIR   99 (254)
T ss_pred             hcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence            45666666666666664311 11 344445555566666666666666666555

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=94.35  E-value=15  Score=43.73  Aligned_cols=342  Identities=16%  Similarity=0.140  Sum_probs=172.3

Q ss_pred             HhCCCCCCHHHHHH-----HHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH--HHHHHHHHHHHhC
Q 000951          237 ASKGIEADVCTYNM-----FIDDLCRNNRSAKGYLLLKNMRKRMITPNEVTYNTLINGFVKEGKI--QVASRVFDEMSML  309 (1211)
Q Consensus       237 ~~~g~~~~~~~~~~-----li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~--~~A~~~~~~m~~~  309 (1211)
                      ..-|++.+..-|..     +|+-+...+.+..|+++-..+...-..- ..+|.....-+.+..+.  +++.+..++=.+.
T Consensus       424 ~~~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~-~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~  502 (829)
T KOG2280|consen  424 VRIGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQG-DRVLLEWARRKIKQSDKMDEEVLDKIDEKLSA  502 (829)
T ss_pred             cccCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCccccc-cHHHHHHHHHHHhccCccchHHHHHHHHHhcc
Confidence            34567766666654     4677788889999999888775432222 56777777777666322  2233333322222


Q ss_pred             CCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC----CcCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCH
Q 000951          310 NFSPNSITYNELIDGHCCKGNFKEAFRLLAMMEEMGL----RPNEVSYGALLNGFCKHAKFDLARSLLERMRTNGISISC  385 (1211)
Q Consensus       310 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~----~p~~~t~~~ll~~~~~~g~~~~a~~l~~~~~~~~~~~~~  385 (1211)
                      -. .+-++|.....--...|+.+-|..+++.=...+-    -.+..-+...+.-+...|+.+...+++-.+...-   +.
T Consensus       503 ~~-~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~---~~  578 (829)
T KOG2280|consen  503 KL-TPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKL---NR  578 (829)
T ss_pred             cC-CCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHH---HH
Confidence            12 3456788887777789999999888764221110    0011223444555556666666666555554431   11


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHH-HH-H----HCCCCCCHHHHH
Q 000951          386 IAYTSVIDGLCKCGLLDEAMQLFNKMFKDGLNPDLITFSVLINGFCKVGMTRKAKAVLC-KM-Y----RDGLVPNKIIYS  459 (1211)
Q Consensus       386 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~-~m-~----~~g~~p~~~~~~  459 (1211)
                      ..+..      ...+...|..+|.+..+..   |..   .+-+.| ++++..++..-|. +- .    ..|..|+..   
T Consensus       579 s~l~~------~l~~~p~a~~lY~~~~r~~---~~~---~l~d~y-~q~dn~~~~a~~~~q~~~~~~~~~~r~~~lk---  642 (829)
T KOG2280|consen  579 SSLFM------TLRNQPLALSLYRQFMRHQ---DRA---TLYDFY-NQDDNHQALASFHLQASYAAETIEGRIPALK---  642 (829)
T ss_pred             HHHHH------HHHhchhhhHHHHHHHHhh---chh---hhhhhh-hcccchhhhhhhhhhhhhhhhhhcccchhHH---
Confidence            11111      1123445666666655421   111   111222 2333222222221 10 0    112333332   


Q ss_pred             HHHHHHHHcCCHHHHHH----------HHHHHHH-cCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhcCCCCCHHHH
Q 000951          460 TLIYYFCKMGKVTEAMK----------VYAVMNR-NAQGSDHFTCNMLVASLCKGGKVCEAEDYVGHMKRIGVVPNSITF  528 (1211)
Q Consensus       460 ~li~~~~~~g~~~~A~~----------~~~~~~~-~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~  528 (1211)
                      .....+.+.....-..+          +.+.+.. .+......+.+--+.-+...|+..+|.++-.+..    -||-..|
T Consensus       643 ~~a~~~a~sk~~s~e~ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~  718 (829)
T KOG2280|consen  643 TAANAFAKSKEKSFEAKALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLW  718 (829)
T ss_pred             HHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhH
Confidence            23344444333111111          1111111 1111122233334445556677777777666655    4666666


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHHc
Q 000951          529 DCMIDGYGTLGDGLKAFSMFDEMVKLGHHPSIFTYGSLLKGLCKGGNLKEAKRFLNSLHHIPSAVDTVAYNTILAETCKS  608 (1211)
Q Consensus       529 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~  608 (1211)
                      -.-+.++...+++++-.++-+.+.      ++.-|...+..|.+.|+.++|.+.+.+....         ...+.+|.+.
T Consensus       719 wLk~~aLa~~~kweeLekfAkskk------sPIGy~PFVe~c~~~~n~~EA~KYiprv~~l---------~ekv~ay~~~  783 (829)
T KOG2280|consen  719 WLKLTALADIKKWEELEKFAKSKK------SPIGYLPFVEACLKQGNKDEAKKYIPRVGGL---------QEKVKAYLRV  783 (829)
T ss_pred             HHHHHHHHhhhhHHHHHHHHhccC------CCCCchhHHHHHHhcccHHHHhhhhhccCCh---------HHHHHHHHHh
Confidence            666777777777766555444332      1344555667777777777777766554211         1456667777


Q ss_pred             CCHHHHHHHH
Q 000951          609 GNLWEAIVLL  618 (1211)
Q Consensus       609 g~~~~A~~~~  618 (1211)
                      |++.+|.++-
T Consensus       784 ~~~~eAad~A  793 (829)
T KOG2280|consen  784 GDVKEAADLA  793 (829)
T ss_pred             ccHHHHHHHH
Confidence            7777776653

>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]

Probab=94.28  E-value=19  Score=48.77  Aligned_cols=315  Identities=9%  Similarity=0.007  Sum_probs=170.7

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHH----HhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Q 000951          600 TILAETCKSGNLWEAIVLLDEM----VQFNLLPDRYTYTILLAGLCRKGKVVSALLFFEKVVSKRTFSPNNVMFTCLVDG  675 (1211)
Q Consensus       600 ~li~~~~~~g~~~~A~~~~~~m----~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~  675 (1211)
                      .+..+-.+++.+..|+-.+++-    .+.+  ....-+-.+...|..-++++...-+...-..    .|+   ....+-.
T Consensus      1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~--~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a----~~s---l~~qil~ 1458 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKE--TEEALYFLLQNLYGSIHDPDGVEGVSARRFA----DPS---LYQQILE 1458 (2382)
T ss_pred             HHHHHHHhhHHHHHHHHHHHHhccccchhH--HHHHHHHHHHHHHHhcCCcchhhhHHHHhhc----Ccc---HHHHHHH
Confidence            4555667888899998888873    2211  1122244444478888888776655543111    222   2334455


Q ss_pred             HHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHH-HHHHccCChHH
Q 000951          676 LFKAGQSKAAMHISKIMDKEGVYPDTIAFNAVMDGFSRMGNMMMANDLLSTMRSRKLCPSLATYNILL-HGYSKKKDLLM  754 (1211)
Q Consensus       676 ~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~-~~~~~~g~~~~  754 (1211)
                      ....|+|..|...|+.+.+.+ ++...+++.++......|.++......+..... ..+....|+.+. .+-.+.++|+.
T Consensus      1459 ~e~~g~~~da~~Cye~~~q~~-p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~-~se~~~~~~s~~~eaaW~l~qwD~ 1536 (2382)
T KOG0890|consen 1459 HEASGNWADAAACYERLIQKD-PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIIN-RSEEVDELNSLGVEAAWRLSQWDL 1536 (2382)
T ss_pred             HHhhccHHHHHHHHHHhhcCC-CccccchhhHHHhhhcccchhHHHhhhcchhhc-cCHHHHHHHHHHHHHHhhhcchhh
Confidence            677899999999999998763 223556666666556677888777766665542 334455555554 34466677776


Q ss_pred             HHHHHHHHHHCCCCCCHHHHHH--HHHHHHhcCChHH-H-HHHHHHHHHc--------CCCC-CHhhHHHHHHHHHhcCc
Q 000951          755 CSMLLNTMKMEGLLPDKLTCHS--LILGFCETGMLEV-G-FKFLKKMIAE--------GTMV-DCFTFNVLMRKCCEAGE  821 (1211)
Q Consensus       755 A~~~~~~~~~~g~~p~~~~~~~--l~~~~~~~g~~~~-A-~~~~~~~~~~--------~~~~-~~~~~~~l~~~~~~~g~  821 (1211)
                      ......   ..    +..+|..  ++.......+-|. + .+..+.+.+.        +... -...|..++....-+ +
T Consensus      1537 ~e~~l~---~~----n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~-e 1608 (2382)
T KOG0890|consen 1537 LESYLS---DR----NIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLL-E 1608 (2382)
T ss_pred             hhhhhh---cc----cccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHH-H
Confidence            555443   11    1112221  2222222111111 0 0111111111        0000 012233333322211 1


Q ss_pred             HHHHHHHHHHHHHCCCCCC------hhhHHHHHHHHHhhcchhhHHHHHHHHH-HcCCCCC-----hhHHHHHHHHHHhc
Q 000951          822 MGKAFDLFNIMNMLGVVPD------TNTQDAIIMGLKRIAAFQESHFVLRGMA-EKGLTPK-----CTQYITLINGMCRV  889 (1211)
Q Consensus       822 ~~~A~~~~~~~~~~~~~~~------~~~~~~l~~~~~~~g~~~eA~~~~~~~~-~~g~~p~-----~~~~~~l~~~~~~~  889 (1211)
                      .+.-.+...     ++.++      ..-|-+-...-....+..|-+-.+++.. ....+|+     ...|...+......
T Consensus      1609 l~~~~~~l~-----~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~a 1683 (2382)
T KOG0890|consen 1609 LENSIEELK-----KVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLA 1683 (2382)
T ss_pred             HHHHHHHhh-----ccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhc
Confidence            111111111     12222      2334444433333334455555555543 2223333     27899999999999


Q ss_pred             CChhhHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 000951          890 GNFQGAFKLKDEMEALGISSSDVAESAMVRGLAHCGKVEEAMLVLNRMLRMR  941 (1211)
Q Consensus       890 g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~  941 (1211)
                      |+++.|....-.+.+.+   -+.++-..+..+...|+-..|+.++++.++..
T Consensus      1684 G~~q~A~nall~A~e~r---~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~ 1732 (2382)
T KOG0890|consen 1684 GHLQRAQNALLNAKESR---LPEIVLERAKLLWQTGDELNALSVLQEILSKN 1732 (2382)
T ss_pred             ccHHHHHHHHHhhhhcc---cchHHHHHHHHHHhhccHHHHHHHHHHHHHhh
Confidence            99999999988887654   35566677888999999999999999999754

>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=94.22  E-value=5.4  Score=38.17  Aligned_cols=25  Identities=16%  Similarity=0.181  Sum_probs=13.1

Q ss_pred             HHHHHHHHhCCChhHHHHHHHHHHH
Q 000951          985 NVLISGLCANGDVMPAFELYEEMKH 1009 (1211)
Q Consensus       985 ~~l~~~~~~~g~~~~a~~~~~~~~~ 1009 (1211)
                      ..|+-+-.++|++..|.+.|+.+..
T Consensus       171 EALglAa~kagd~a~A~~~F~qia~  195 (221)
T COG4649         171 EALGLAAYKAGDFAKAKSWFVQIAN  195 (221)
T ss_pred             HHHhHHHHhccchHHHHHHHHHHHc
Confidence            3444444455555555555555544

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=94.20  E-value=1.7  Score=42.48  Aligned_cols=91  Identities=11%  Similarity=0.033  Sum_probs=50.3

Q ss_pred             HHHHhhcchhhHHHHHHHHHHcCCCCCh--hHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCC
Q 000951          849 MGLKRIAAFQESHFVLRGMAEKGLTPKC--TQYITLINGMCRVGNFQGAFKLKDEMEALGISSSDVAESAMVRGLAHCGK  926 (1211)
Q Consensus       849 ~~~~~~g~~~eA~~~~~~~~~~g~~p~~--~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~  926 (1211)
                      ..+...|++++|+.-++..+....+.+.  .+-..|+......|.+++|+..++.....+.  .......-++++...|+
T Consensus        97 k~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w--~~~~~elrGDill~kg~  174 (207)
T COG2976          97 KAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESW--AAIVAELRGDILLAKGD  174 (207)
T ss_pred             HHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccH--HHHHHHHhhhHHHHcCc
Confidence            3455666777777777666642211111  3333455666666777777666665543221  11112334666777777


Q ss_pred             HHHHHHHHHHHHhCC
Q 000951          927 VEEAMLVLNRMLRMR  941 (1211)
Q Consensus       927 ~~eA~~~~~~~~~~~  941 (1211)
                      .++|+..|+++++.+
T Consensus       175 k~~Ar~ay~kAl~~~  189 (207)
T COG2976         175 KQEARAAYEKALESD  189 (207)
T ss_pred             hHHHHHHHHHHHHcc
Confidence            777777777777665

>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=94.07  E-value=2.8  Score=40.02  Aligned_cols=123  Identities=10%  Similarity=0.055  Sum_probs=51.9

Q ss_pred             HhcCcHHHHHHHHHHHHHCCCCCCh-hhHHHHHHHHHhhcchhhHHHHHHHHHHcCCCCCh---hHHHHHHHHHHhcCCh
Q 000951          817 CEAGEMGKAFDLFNIMNMLGVVPDT-NTQDAIIMGLKRIAAFQESHFVLRGMAEKGLTPKC---TQYITLINGMCRVGNF  892 (1211)
Q Consensus       817 ~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~eA~~~~~~~~~~g~~p~~---~~~~~l~~~~~~~g~~  892 (1211)
                      .+.+..++|+..|..+.+.|...-+ .....++....+.|+-.+|+..|.++-.-.-.|..   ..-..-+.++...|.|
T Consensus        69 A~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy  148 (221)
T COG4649          69 AQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSY  148 (221)
T ss_pred             HHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccH
Confidence            3444555555555555543332211 11222233344555555555555555442222211   1111222333445555


Q ss_pred             hhHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 000951          893 QGAFKLKDEMEALGISSSDVAESAMVRGLAHCGKVEEAMLVLNRMLR  939 (1211)
Q Consensus       893 ~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~  939 (1211)
                      ++.....+-+..-+.+-...+-..|+-+-.+.|++.+|.+.|+++..
T Consensus       149 ~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~  195 (221)
T COG4649         149 DDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN  195 (221)
T ss_pred             HHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence            55544444443222222222334444444555555555555555444

>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi

Probab=93.96  E-value=21  Score=43.94  Aligned_cols=49  Identities=12%  Similarity=0.139  Sum_probs=23.9

Q ss_pred             HhcCcHHHHHHHHHHHHHCCC-CCC-------hhhHHHHHHHHHhhcchhhHHHHHH
Q 000951          817 CEAGEMGKAFDLFNIMNMLGV-VPD-------TNTQDAIIMGLKRIAAFQESHFVLR  865 (1211)
Q Consensus       817 ~~~g~~~~A~~~~~~~~~~~~-~~~-------~~~~~~l~~~~~~~g~~~eA~~~~~  865 (1211)
                      +-.+++..|....+.+.+... .|+       +..+...+-.+...|+.+.|+..|.
T Consensus       372 ~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~  428 (608)
T PF10345_consen  372 FIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQ  428 (608)
T ss_pred             HHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHh
Confidence            345666666666666543110 111       2222333333344566777777775

It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=93.89  E-value=11  Score=40.77  Aligned_cols=88  Identities=13%  Similarity=0.166  Sum_probs=43.1

Q ss_pred             hCC-ChHHHHHHHHHHHHc----C---CCCCC-----HHHHHHHHHHHHHcCCHHH---HHHHHHHHHhCCCCCCHHHHH
Q 000951          642 RKG-KVVSALLFFEKVVSK----R---TFSPN-----NVMFTCLVDGLFKAGQSKA---AMHISKIMDKEGVYPDTIAFN  705 (1211)
Q Consensus       642 ~~g-~~~~A~~~~~~~~~~----~---~~~p~-----~~~~~~l~~~~~~~g~~~~---A~~~~~~~~~~g~~~~~~~~~  705 (1211)
                      +.+ ++++|...++++.+-    +   ...|+     ..++..++.+|...+..+.   |.++.+.+... ....+.++.
T Consensus        47 ~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e-~~~~~~~~~  125 (278)
T PF08631_consen   47 SKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRLSILRLLANAYLEWDTYESVEKALNALRLLESE-YGNKPEVFL  125 (278)
T ss_pred             HcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHh-CCCCcHHHH
Confidence            344 666666666555442    1   12222     2345556666666555443   34444444222 111233333


Q ss_pred             HHHHHHHhcCChHHHHHHHHHHHHC
Q 000951          706 AVMDGFSRMGNMMMANDLLSTMRSR  730 (1211)
Q Consensus       706 ~li~~~~~~g~~~~A~~~~~~~~~~  730 (1211)
                      .-+..+.+.++.+++.+.+.+|...
T Consensus       126 L~l~il~~~~~~~~~~~~L~~mi~~  150 (278)
T PF08631_consen  126 LKLEILLKSFDEEEYEEILMRMIRS  150 (278)
T ss_pred             HHHHHHhccCChhHHHHHHHHHHHh
Confidence            3344455566677777777777653

It is also involved in sporulation [].

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=93.78  E-value=0.88  Score=43.98  Aligned_cols=79  Identities=18%  Similarity=0.119  Sum_probs=45.7

Q ss_pred             HHHHHHHHHHHHhCCcccCHHHHHHHHHHhhhhCC-----------HHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhCC
Q 000951          927 VEEAMLVLNRMLRMRLVPTIATFTTLIHKFCKEAK-----------FVDALKLKGTMELSGVKLDVVSYNVLISGLCANG  995 (1211)
Q Consensus       927 ~~eA~~~~~~~~~~~~~p~~~~~~~L~~~~~~~g~-----------~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g  995 (1211)
                      +++|+.=|++++..+|. ...++..+|.+|..++.           +++|...|+.....  +|++..|..-+...    
T Consensus        51 iedAisK~eeAL~I~P~-~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~--~P~ne~Y~ksLe~~----  123 (186)
T PF06552_consen   51 IEDAISKFEEALKINPN-KHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDE--DPNNELYRKSLEMA----  123 (186)
T ss_dssp             HHHHHHHHHHHHHH-TT--HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH---TT-HHHHHHHHHH----
T ss_pred             HHHHHHHHHHHHhcCCc-hHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhc--CCCcHHHHHHHHHH----
Confidence            44555556666665554 55677777777766543           56666666666555  88888887666643    


Q ss_pred             ChhHHHHHHHHHHHcCCcc
Q 000951          996 DVMPAFELYEEMKHKGLCP 1014 (1211)
Q Consensus       996 ~~~~a~~~~~~~~~~g~~p 1014 (1211)
                        +.|-+++.+..+.+...
T Consensus       124 --~kap~lh~e~~~~~~~~  140 (186)
T PF06552_consen  124 --AKAPELHMEIHKQGLGQ  140 (186)
T ss_dssp             --HTHHHHHHHHHHSSS--
T ss_pred             --HhhHHHHHHHHHHHhhh
Confidence              34556666665554443

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=93.70  E-value=21  Score=43.13  Aligned_cols=116  Identities=17%  Similarity=0.097  Sum_probs=56.6

Q ss_pred             HHHHHHHHcCCCHHHHHHHHHHhhhCCCCcc--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 000951          564 GSLLKGLCKGGNLKEAKRFLNSLHHIPSAVD--TVAYNTILAETCKSGNLWEAIVLLDEMVQFNLLPDRYTYTILLAGLC  641 (1211)
Q Consensus       564 ~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~  641 (1211)
                      ..-++.+++...++-|..+-+..   +.+++  .......++.+.+.|++++|...|-+.+.. +.|..     ++.-|.
T Consensus       338 e~kL~iL~kK~ly~~Ai~LAk~~---~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~s~-----Vi~kfL  408 (933)
T KOG2114|consen  338 ETKLDILFKKNLYKVAINLAKSQ---HLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEPSE-----VIKKFL  408 (933)
T ss_pred             HHHHHHHHHhhhHHHHHHHHHhc---CCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CChHH-----HHHHhc
Confidence            34455566666666666554432   11111  223334444455666666666666555432 22222     223333


Q ss_pred             hCCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 000951          642 RKGKVVSALLFFEKVVSKRTFSPNNVMFTCLVDGLFKAGQSKAAMHISK  690 (1211)
Q Consensus       642 ~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~  690 (1211)
                      ...++.+-..+++.+.+.|  -.+...-+.|+.+|.+.++.++-.+..+
T Consensus       409 daq~IknLt~YLe~L~~~g--la~~dhttlLLncYiKlkd~~kL~efI~  455 (933)
T KOG2114|consen  409 DAQRIKNLTSYLEALHKKG--LANSDHTTLLLNCYIKLKDVEKLTEFIS  455 (933)
T ss_pred             CHHHHHHHHHHHHHHHHcc--cccchhHHHHHHHHHHhcchHHHHHHHh
Confidence            4444444555555555555  2333344455566666666655544433

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=93.60  E-value=14  Score=41.98  Aligned_cols=63  Identities=24%  Similarity=0.228  Sum_probs=35.6

Q ss_pred             hHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCC---chHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 000951          877 TQYITLINGMCRVGNFQGAFKLKDEMEALGISS---SDVAESAMVRGLAHCGKVEEAMLVLNRMLR  939 (1211)
Q Consensus       877 ~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~  939 (1211)
                      .++..++.++.+.|+++.|...+.++...+...   .+.+...-+..+...|+..+|+..++..++
T Consensus       147 ~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~  212 (352)
T PF02259_consen  147 ETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK  212 (352)
T ss_pred             HHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            455666666666666666666666665432111   233344445556666666666666666655

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]

Probab=93.55  E-value=13  Score=40.84  Aligned_cols=60  Identities=17%  Similarity=0.130  Sum_probs=31.3

Q ss_pred             hHHHHHHHHHHcCCCCChhHHHHHHHHHHh----cCChhhHHHHHHHHHHcCCCCchHHHHHHHHHHHhcC
Q 000951          859 ESHFVLRGMAEKGLTPKCTQYITLINGMCR----VGNFQGAFKLKDEMEALGISSSDVAESAMVRGLAHCG  925 (1211)
Q Consensus       859 eA~~~~~~~~~~g~~p~~~~~~~l~~~~~~----~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  925 (1211)
                      .|..+|.++-..+   +......++..|..    ..++++|...|+++.+.|.   ......++ .+...|
T Consensus       173 ~A~~~~~~aa~~~---~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~---~~a~~~~~-~~~~~g  236 (292)
T COG0790         173 KALYLYRKAAELG---NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD---GAACYNLG-LMYLNG  236 (292)
T ss_pred             hHHHHHHHHHHhc---CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC---HHHHHHHH-HHHhcC
Confidence            5666666655544   33444555544432    2356677777777766553   44444444 444333

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=93.55  E-value=13  Score=40.32  Aligned_cols=123  Identities=13%  Similarity=0.091  Sum_probs=60.0

Q ss_pred             hCCChHHHHHHHHHHHHcC-CCCCCH-----HHHHHHHHHHHHcC-CHHHHHHHHHHHHhC--------CCCCCH-----
Q 000951          642 RKGKVVSALLFFEKVVSKR-TFSPNN-----VMFTCLVDGLFKAG-QSKAAMHISKIMDKE--------GVYPDT-----  701 (1211)
Q Consensus       642 ~~g~~~~A~~~~~~~~~~~-~~~p~~-----~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~--------g~~~~~-----  701 (1211)
                      +.|+.+.|..++.++.... ...|+.     ..+..++......+ +++.|..++++..+.        ...++.     
T Consensus         5 ~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~   84 (278)
T PF08631_consen    5 KQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRL   84 (278)
T ss_pred             hhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHH
Confidence            3455555555555554322 123331     12223333444555 777777777666332        112222     


Q ss_pred             HHHHHHHHHHHhcCCh---HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHC
Q 000951          702 IAFNAVMDGFSRMGNM---MMANDLLSTMRSRKLCPSLATYNILLHGYSKKKDLLMCSMLLNTMKME  765 (1211)
Q Consensus       702 ~~~~~li~~~~~~g~~---~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  765 (1211)
                      .+...++.+|...+..   ++|..+++.+... ....+..+..-+.++.+.++.+++.+.+.+|+..
T Consensus        85 ~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e-~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~  150 (278)
T PF08631_consen   85 SILRLLANAYLEWDTYESVEKALNALRLLESE-YGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRS  150 (278)
T ss_pred             HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHh-CCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHh
Confidence            3345556666665544   3444455555432 1112333434444555566677777777777654

It is also involved in sporulation [].

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=93.53  E-value=0.12  Score=37.56  Aligned_cols=26  Identities=19%  Similarity=0.176  Sum_probs=11.5

Q ss_pred             HHHHHHHHHhhcchhhHHHHHHHHHH
Q 000951          844 QDAIIMGLKRIAAFQESHFVLRGMAE  869 (1211)
Q Consensus       844 ~~~l~~~~~~~g~~~eA~~~~~~~~~  869 (1211)
                      |..++..|.+.|++++|+.+|+++++
T Consensus         4 ~~~la~~~~~~G~~~~A~~~~~~~l~   29 (44)
T PF13428_consen    4 WLALARAYRRLGQPDEAERLLRRALA   29 (44)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            33444444444444444444444444

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=93.18  E-value=12  Score=42.30  Aligned_cols=29  Identities=3%  Similarity=0.001  Sum_probs=13.4

Q ss_pred             CCHHHHHHHHHHHHhCCcccCHHHHHHHHH
Q 000951          925 GKVEEAMLVLNRMLRMRLVPTIATFTTLIH  954 (1211)
Q Consensus       925 g~~~eA~~~~~~~~~~~~~p~~~~~~~L~~  954 (1211)
                      +..+++.+.|+++.+..+. ...+|..++.
T Consensus       272 ~~~~~~~~~~~~a~~~~~~-~~k~~~~~a~  300 (352)
T PF02259_consen  272 ESSDEILKYYKEATKLDPS-WEKAWHSWAL  300 (352)
T ss_pred             ccHHHHHHHHHHHHHhChh-HHHHHHHHHH
Confidence            4445555555555554433 3344444444

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=93.14  E-value=1.1  Score=51.72  Aligned_cols=132  Identities=17%  Similarity=0.157  Sum_probs=81.3

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 000951          667 VMFTCLVDGLFKAGQSKAAMHISKIMDKEGVYPDTIAFNAVMDGFSRMGNMMMANDLLSTMRSRKLCPSLATYNILLHGY  746 (1211)
Q Consensus       667 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~  746 (1211)
                      .....++..+.+.|.++.|+++..         |+.   .-.+...+.|+++.|.++.++.      ++...|..|+...
T Consensus       296 ~~~~~i~~fL~~~G~~e~AL~~~~---------D~~---~rFeLAl~lg~L~~A~~~a~~~------~~~~~W~~Lg~~A  357 (443)
T PF04053_consen  296 DQGQSIARFLEKKGYPELALQFVT---------DPD---HRFELALQLGNLDIALEIAKEL------DDPEKWKQLGDEA  357 (443)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHSS----------HH---HHHHHHHHCT-HHHHHHHCCCC------STHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHCCCHHHHHhhcC---------ChH---HHhHHHHhcCCHHHHHHHHHhc------CcHHHHHHHHHHH
Confidence            345666777777787777776532         222   2234455778888887654332      3677888888888


Q ss_pred             HccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCcHHHHH
Q 000951          747 SKKKDLLMCSMLLNTMKMEGLLPDKLTCHSLILGFCETGMLEVGFKFLKKMIAEGTMVDCFTFNVLMRKCCEAGEMGKAF  826 (1211)
Q Consensus       747 ~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~  826 (1211)
                      ..+|+++-|.+.|.+..+         +..|+-.|.-.|+.+.-.++.+.+...|      -++.-..++.-.|+.++..
T Consensus       358 L~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~------~~n~af~~~~~lgd~~~cv  422 (443)
T PF04053_consen  358 LRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERG------DINIAFQAALLLGDVEECV  422 (443)
T ss_dssp             HHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------HHHHHHHHHHHT-HHHHH
T ss_pred             HHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHcc------CHHHHHHHHHHcCCHHHHH
Confidence            888888888888877654         3456666777788777777766666543      2344444555667777777


Q ss_pred             HHHHH
Q 000951          827 DLFNI  831 (1211)
Q Consensus       827 ~~~~~  831 (1211)
                      +++.+
T Consensus       423 ~lL~~  427 (443)
T PF04053_consen  423 DLLIE  427 (443)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            66644

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]

Probab=92.86  E-value=0.87  Score=47.95  Aligned_cols=90  Identities=14%  Similarity=0.007  Sum_probs=45.8

Q ss_pred             HHHhhcchhhHHHHHHHHHHcCCCC-ChhHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHH
Q 000951          850 GLKRIAAFQESHFVLRGMAEKGLTP-KCTQYITLINGMCRVGNFQGAFKLKDEMEALGISSSDVAESAMVRGLAHCGKVE  928 (1211)
Q Consensus       850 ~~~~~g~~~eA~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~  928 (1211)
                      -|.++|+++||+..|...+.  ..| +.+++..-+.+|.+.+++..|..-...++..+ ..-..+|..-+.+-...|+..
T Consensus       106 ~yFKQgKy~EAIDCYs~~ia--~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd-~~Y~KAYSRR~~AR~~Lg~~~  182 (536)
T KOG4648|consen  106 TYFKQGKYEEAIDCYSTAIA--VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALD-KLYVKAYSRRMQARESLGNNM  182 (536)
T ss_pred             hhhhccchhHHHHHhhhhhc--cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhh-HHHHHHHHHHHHHHHHHhhHH
Confidence            34555555555555555554  445 34555555555555555555555555444331 122234444455555555555


Q ss_pred             HHHHHHHHHHhCCc
Q 000951          929 EAMLVLNRMLRMRL  942 (1211)
Q Consensus       929 eA~~~~~~~~~~~~  942 (1211)
                      ||.+-++.++++.|
T Consensus       183 EAKkD~E~vL~LEP  196 (536)
T KOG4648|consen  183 EAKKDCETVLALEP  196 (536)
T ss_pred             HHHHhHHHHHhhCc
Confidence            55555555555443

>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]

Probab=92.59  E-value=19  Score=39.52  Aligned_cols=98  Identities=12%  Similarity=-0.043  Sum_probs=49.9

Q ss_pred             chhhHHHHHHHHHHcCCCCChhHHHHHHHHHHhcC-------ChhhHHHHHHHHHHcCCCCchHHHHHHHHHHHh----c
Q 000951          856 AFQESHFVLRGMAEKGLTPKCTQYITLINGMCRVG-------NFQGAFKLKDEMEALGISSSDVAESAMVRGLAH----C  924 (1211)
Q Consensus       856 ~~~eA~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g-------~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~  924 (1211)
                      +..+|..+|+++.+.|..+...+...++..|..-+       +...|...|.++...+   ++.+...++..|..    .
T Consensus       128 d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~---~~~a~~~lg~~y~~G~Gv~  204 (292)
T COG0790         128 DLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG---NPDAQLLLGRMYEKGLGVP  204 (292)
T ss_pred             CHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc---CHHHHHHHHHHHHcCCCCC
Confidence            44555555555555443332222333333333221       2236777777776554   44455555555533    2


Q ss_pred             CCHHHHHHHHHHHHhCCcccCHHHHHHHHHHhhhhC
Q 000951          925 GKVEEAMLVLNRMLRMRLVPTIATFTTLIHKFCKEA  960 (1211)
Q Consensus       925 g~~~eA~~~~~~~~~~~~~p~~~~~~~L~~~~~~~g  960 (1211)
                      .+..+|...|+++.+.+.   ......++ .+...|
T Consensus       205 ~d~~~A~~wy~~Aa~~g~---~~a~~~~~-~~~~~g  236 (292)
T COG0790         205 RDLKKAFRWYKKAAEQGD---GAACYNLG-LMYLNG  236 (292)
T ss_pred             cCHHHHHHHHHHHHHCCC---HHHHHHHH-HHHhcC
Confidence            357777777777777663   44444455 444444

>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase

Probab=92.54  E-value=2.1  Score=39.59  Aligned_cols=51  Identities=14%  Similarity=0.195  Sum_probs=30.2

Q ss_pred             CCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHH-CCCCcCHhHHHHHHHHHH
Q 000951          311 FSPNSITYNELIDGHCCKGNFKEAFRLLAMMEE-MGLRPNEVSYGALLNGFC  361 (1211)
Q Consensus       311 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~g~~p~~~t~~~ll~~~~  361 (1211)
                      ..|+..+..+++.+|+.+|++..|+++.+...+ .+++.+..+|..|++.+.
T Consensus        48 l~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~   99 (126)
T PF12921_consen   48 LYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAY   99 (126)
T ss_pred             CCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence            345666666666666666666666666665543 345555566666665543

The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].

>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi

Probab=92.47  E-value=33  Score=42.12  Aligned_cols=192  Identities=17%  Similarity=0.201  Sum_probs=116.0

Q ss_pred             hHHHHHHHHhhhCCCCCCchhHHHHHHHHHHHH-hCCChHHHHHHHHHHHHcCCCCcchhhhhhccCCCCCCChHHHHHH
Q 000951           33 RLALKFLNWVMNQPGLELKHLTHILCLTTHVLV-KTRMYEDAKLILRQLAQMGIGQNSVFGSLMNTYPLCNSNPSVFDLL  111 (1211)
Q Consensus        33 ~~al~~f~w~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l  111 (1211)
                      ..|++-+.-+.++..++|.....++--++.+|. ....++.|+..+.+.+...-. +.+++ +         .-.+-..+
T Consensus        38 ~~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~-~~~~d-~---------k~~~~~ll  106 (608)
T PF10345_consen   38 ATAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCER-HRLTD-L---------KFRCQFLL  106 (608)
T ss_pred             HHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccc-cchHH-H---------HHHHHHHH
Confidence            357888888888777777666777777788877 678899999999876542211 11110 0         01233456


Q ss_pred             HHHHHHcCChhHHHHHHHHHhhC----CCCCCHHHHHHH-HHHHHhCCChhHHHHHHHHHHhCC---CCCCHHHHHHHHH
Q 000951          112 IRVYLREGMVEYALETFQLMGFR----GFNPSVYTCNMM-LSFMLKDRRVDSVWLLFDDMLDRK---ICPNVATFNILIN  183 (1211)
Q Consensus       112 ~~~~~~~g~~~~A~~~~~~~~~~----g~~~~~~~~~~l-l~~l~~~~~~~~a~~~~~~m~~~~---~~~~~~~~~~li~  183 (1211)
                      ++.|.+.+... |...+++..+.    +..+-...|..+ +..+...+++..|.+.++.+...-   ..|-..++..++.
T Consensus       107 ~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~  185 (608)
T PF10345_consen  107 ARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSE  185 (608)
T ss_pred             HHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHH
Confidence            78888777665 88888876532    222223334443 222333478888999998875422   2344555555555


Q ss_pred             HHH--hcCChhHHHHHHHHHHHcCC---------CCCHhHHHHHHHHHH--HcCChHHHHHHHHHH
Q 000951          184 VSC--VEGKLKKAGYLLRKMEESGY---------VPNIVTYNTLLNWYC--KKGRYKAAFKLIDCM  236 (1211)
Q Consensus       184 ~~~--~~g~~~~A~~~~~~m~~~g~---------~p~~~~~~~li~~~~--~~g~~~~A~~~~~~m  236 (1211)
                      +..  +.+..+++.+.+.++.....         .|...+|..++..++  ..|+++.+...+.++
T Consensus       186 ~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~l  251 (608)
T PF10345_consen  186 ALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQL  251 (608)
T ss_pred             HHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            443  45666777777777643211         235556767765555  467766666655554

It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=92.40  E-value=5.4  Score=39.20  Aligned_cols=91  Identities=18%  Similarity=0.093  Sum_probs=60.1

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhCCcccC--HHHHHHHHHHhhhhCCHHHHHHHHHHHHhcCCCCchH--HHHHHHHHHH
Q 000951          917 MVRGLAHCGKVEEAMLVLNRMLRMRLVPT--IATFTTLIHKFCKEAKFVDALKLKGTMELSGVKLDVV--SYNVLISGLC  992 (1211)
Q Consensus       917 l~~~~~~~g~~~eA~~~~~~~~~~~~~p~--~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~--~~~~l~~~~~  992 (1211)
                      ++..+...|++++|+..++.++......+  ..+-..|+.+....|.+++|+..+...+    +++-.  ....-++++.
T Consensus        95 lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~----~~~w~~~~~elrGDill  170 (207)
T COG2976          95 LAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIK----EESWAAIVAELRGDILL  170 (207)
T ss_pred             HHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccc----cccHHHHHHHHhhhHHH
Confidence            35566777888888888887775432212  2334557777888888888888766443    22222  2355666888


Q ss_pred             hCCChhHHHHHHHHHHHcC
Q 000951          993 ANGDVMPAFELYEEMKHKG 1011 (1211)
Q Consensus       993 ~~g~~~~a~~~~~~~~~~g 1011 (1211)
                      ..|+-++|..-|++.++.+
T Consensus       171 ~kg~k~~Ar~ay~kAl~~~  189 (207)
T COG2976         171 AKGDKQEARAAYEKALESD  189 (207)
T ss_pred             HcCchHHHHHHHHHHHHcc
Confidence            8888888888888877755

>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase

Probab=92.36  E-value=1.2  Score=41.08  Aligned_cols=96  Identities=11%  Similarity=0.110  Sum_probs=58.5

Q ss_pred             HhHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 000951          210 IVTYNTLLNWYCKKGRYKAAFKLIDCMASKGIEADVCTYNMFIDDLCRNNRSAKGYLLLKNMRKRMITPNEVTYNTLING  289 (1211)
Q Consensus       210 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~  289 (1211)
                      ..++.++|.++++.|+++....+.+..-.  +.++...         ..+.         --......|+..+..+++.+
T Consensus         2 e~~~~~ii~al~r~g~~~~i~~~i~~~Wg--I~~~~~~---------~~~~---------~~~~spl~Pt~~lL~AIv~s   61 (126)
T PF12921_consen    2 EELLCNIIYALGRSGQLDSIKSYIKSVWG--IDVNGKK---------KEGD---------YPPSSPLYPTSRLLIAIVHS   61 (126)
T ss_pred             hHHHHHHHHHHhhcCCHHHHHHHHHHhcC--CCCCCcc---------ccCc---------cCCCCCCCCCHHHHHHHHHH
Confidence            44566677777777777766666655432  2211100         0000         01123456888888888888


Q ss_pred             HHHcCCHHHHHHHHHHHHhC-CCCCChHHHHHHHHHH
Q 000951          290 FVKEGKIQVASRVFDEMSML-NFSPNSITYNELIDGH  325 (1211)
Q Consensus       290 ~~~~g~~~~A~~~~~~m~~~-g~~~~~~~~~~li~~~  325 (1211)
                      |+..|++..|.++.+...+. +++-+...|..|+.-.
T Consensus        62 f~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~   98 (126)
T PF12921_consen   62 FGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWA   98 (126)
T ss_pred             HHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence            88888888888888876554 5555677787777543

The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=92.31  E-value=0.26  Score=33.27  Aligned_cols=29  Identities=24%  Similarity=0.246  Sum_probs=15.7

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 000951          913 AESAMVRGLAHCGKVEEAMLVLNRMLRMR  941 (1211)
Q Consensus       913 ~~~~l~~~~~~~g~~~eA~~~~~~~~~~~  941 (1211)
                      +|..++.++...|++++|++.|+++++.+
T Consensus         3 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~   31 (34)
T PF00515_consen    3 AYYNLGNAYFQLGDYEEALEYYQRALELD   31 (34)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHhCCchHHHHHHHHHHHHC
Confidence            45555555555555555555555555544

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=92.20  E-value=0.74  Score=48.62  Aligned_cols=74  Identities=9%  Similarity=0.042  Sum_probs=35.5

Q ss_pred             HHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHh-----CCCCCCHHHHHHHHHH
Q 000951          110 LLIRVYLREGMVEYALETFQLMGFRGFNPSVYTCNMMLSFMLKDRRVDSVWLLFDDMLD-----RKICPNVATFNILINV  184 (1211)
Q Consensus       110 ~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~l~~~~~~~~a~~~~~~m~~-----~~~~~~~~~~~~li~~  184 (1211)
                      .++..+...|+++.+...++++.... +-+...|..++.+|.+.|+...|...|+++.+     .|+.|...+...+...
T Consensus       158 ~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y~~~  236 (280)
T COG3629         158 KLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALYEEI  236 (280)
T ss_pred             HHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHHHHH
Confidence            34444444455555555554444333 33444455555555555555555555544432     4555555555554444

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=91.99  E-value=0.14  Score=34.53  Aligned_cols=30  Identities=27%  Similarity=0.422  Sum_probs=14.5

Q ss_pred             HHHHHcCCCCCh-hHHHHHHHHHHhcCChhhHH
Q 000951          865 RGMAEKGLTPKC-TQYITLINGMCRVGNFQGAF  896 (1211)
Q Consensus       865 ~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~eA~  896 (1211)
                      +++++  ++|+. .+|..++.+|...|++++|.
T Consensus         3 ~kAie--~~P~n~~a~~nla~~~~~~g~~~~A~   33 (34)
T PF13431_consen    3 KKAIE--LNPNNAEAYNNLANLYLNQGDYEEAI   33 (34)
T ss_pred             HHHHH--HCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence            34444  44532 45555555555555555543

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=91.80  E-value=0.34  Score=32.60  Aligned_cols=29  Identities=21%  Similarity=0.224  Sum_probs=14.6

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 000951          913 AESAMVRGLAHCGKVEEAMLVLNRMLRMR  941 (1211)
Q Consensus       913 ~~~~l~~~~~~~g~~~eA~~~~~~~~~~~  941 (1211)
                      ++..++.++...|++++|++.|+++++..
T Consensus         3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l~   31 (34)
T PF07719_consen    3 AWYYLGQAYYQLGNYEEAIEYFEKALELD   31 (34)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHHC
Confidence            34445555555555555555555555543

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]

Probab=91.68  E-value=26  Score=39.09  Aligned_cols=79  Identities=5%  Similarity=0.150  Sum_probs=49.7

Q ss_pred             CCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhHHHHH
Q 000951          137 NPSVYTCNMMLSFMLKDRRVDSVWLLFDDMLDRKICPNVATFNILINVSCVEGKLKKAGYLLRKMEESGYVPNIVTYNTL  216 (1211)
Q Consensus       137 ~~~~~~~~~ll~~l~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l  216 (1211)
                      +.+..+|-.|+.-|...+.++...+++++|..- ++--..+|...+.+-....++...+.+|.+-....  .+...|...
T Consensus        39 PtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~p-fp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~--l~ldLW~lY  115 (660)
T COG5107          39 PTNILSYFQLIQYLETQESMDAEREMYEQLSSP-FPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKS--LNLDLWMLY  115 (660)
T ss_pred             chhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCC-CccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhh--ccHhHHHHH
Confidence            456677777777777777777777777777532 44445566666666666666777777777666542  234445444


Q ss_pred             HH
Q 000951          217 LN  218 (1211)
Q Consensus       217 i~  218 (1211)
                      +.
T Consensus       116 l~  117 (660)
T COG5107         116 LE  117 (660)
T ss_pred             HH
Confidence            43

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=91.65  E-value=0.29  Score=32.98  Aligned_cols=27  Identities=7%  Similarity=0.007  Sum_probs=12.8

Q ss_pred             hHHHHHHHHHhhcchhhHHHHHHHHHH
Q 000951          843 TQDAIIMGLKRIAAFQESHFVLRGMAE  869 (1211)
Q Consensus       843 ~~~~l~~~~~~~g~~~eA~~~~~~~~~  869 (1211)
                      +|..++..|...|++++|+..|+++++
T Consensus         3 ~~~~~g~~~~~~~~~~~A~~~~~~al~   29 (34)
T PF00515_consen    3 AYYNLGNAYFQLGDYEEALEYYQRALE   29 (34)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence            344444455555555555555555544

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=91.49  E-value=0.19  Score=34.53  Aligned_cols=22  Identities=18%  Similarity=0.194  Sum_probs=9.5

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHH
Q 000951          915 SAMVRGLAHCGKVEEAMLVLNR  936 (1211)
Q Consensus       915 ~~l~~~~~~~g~~~eA~~~~~~  936 (1211)
                      ..|+.+|.+.|++++|+++|++
T Consensus         3 ~~Lg~~~~~~g~~~~Ai~~y~~   24 (36)
T PF13176_consen    3 NNLGRIYRQQGDYEKAIEYYEQ   24 (36)
T ss_dssp             HHHHHHHHHCT-HHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHH
Confidence            3344444444444444444444

>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=91.49  E-value=1.7  Score=43.70  Aligned_cols=83  Identities=10%  Similarity=-0.016  Sum_probs=43.2

Q ss_pred             HhcCCHHHHHHHHHHHHhCCcccCHHHHHHHHHHhhhhCCHHHHHHHHHHHHhcCCCCchH-HHHHHHHHHHhCCChhHH
Q 000951          922 AHCGKVEEAMLVLNRMLRMRLVPTIATFTTLIHKFCKEAKFVDALKLKGTMELSGVKLDVV-SYNVLISGLCANGDVMPA 1000 (1211)
Q Consensus       922 ~~~g~~~eA~~~~~~~~~~~~~p~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~a 1000 (1211)
                      ....++..|+..|.+++..+|. .+..|.+-+.++.+..+|+.+..--+...+  +.|+.. ..+.++........+++|
T Consensus        21 f~~k~y~~ai~~y~raI~~nP~-~~~Y~tnralchlk~~~~~~v~~dcrralq--l~~N~vk~h~flg~~~l~s~~~~ea   97 (284)
T KOG4642|consen   21 FIPKRYDDAIDCYSRAICINPT-VASYYTNRALCHLKLKHWEPVEEDCRRALQ--LDPNLVKAHYFLGQWLLQSKGYDEA   97 (284)
T ss_pred             cchhhhchHHHHHHHHHhcCCC-cchhhhhHHHHHHHhhhhhhhhhhHHHHHh--cChHHHHHHHHHHHHHHhhccccHH
Confidence            3344455666666666554433 334445555555555666665554332222  255544 445555555555566666


Q ss_pred             HHHHHHH
Q 000951         1001 FELYEEM 1007 (1211)
Q Consensus      1001 ~~~~~~~ 1007 (1211)
                      +.++.+.
T Consensus        98 I~~Lqra  104 (284)
T KOG4642|consen   98 IKVLQRA  104 (284)
T ss_pred             HHHHHHH
Confidence            6555554

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=91.49  E-value=3.5  Score=47.60  Aligned_cols=105  Identities=12%  Similarity=0.090  Sum_probs=59.2

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHh
Q 000951          774 CHSLILGFCETGMLEVGFKFLKKMIAEGTMVDCFTFNVLMRKCCEAGEMGKAFDLFNIMNMLGVVPDTNTQDAIIMGLKR  853 (1211)
Q Consensus       774 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~  853 (1211)
                      .+.++.-+.+.|..+.|+++.+.         +.   .--+...++|+++.|.++.++      .++...|..|+....+
T Consensus       298 ~~~i~~fL~~~G~~e~AL~~~~D---------~~---~rFeLAl~lg~L~~A~~~a~~------~~~~~~W~~Lg~~AL~  359 (443)
T PF04053_consen  298 GQSIARFLEKKGYPELALQFVTD---------PD---HRFELALQLGNLDIALEIAKE------LDDPEKWKQLGDEALR  359 (443)
T ss_dssp             HHHHHHHHHHTT-HHHHHHHSS----------HH---HHHHHHHHCT-HHHHHHHCCC------CSTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHhhcCC---------hH---HHhHHHHhcCCHHHHHHHHHh------cCcHHHHHHHHHHHHH
Confidence            44455555666766666665322         11   122334566777777665432      2356677777777777


Q ss_pred             hcchhhHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChhhHHHHHHHHHHc
Q 000951          854 IAAFQESHFVLRGMAEKGLTPKCTQYITLINGMCRVGNFQGAFKLKDEMEAL  905 (1211)
Q Consensus       854 ~g~~~eA~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~  905 (1211)
                      +|+++-|++.|++.-+         +..|.-.|.-.|+.+.-.++-+.+...
T Consensus       360 ~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~  402 (443)
T PF04053_consen  360 QGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEER  402 (443)
T ss_dssp             TTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHT
T ss_pred             cCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHc
Confidence            7777777777777554         556666666677765555555555444

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>smart00299 CLH Clathrin heavy chain repeat homology

Probab=91.38  E-value=8.6  Score=36.56  Aligned_cols=83  Identities=16%  Similarity=0.106  Sum_probs=38.5

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHhHHHHHHHHHHhcC
Q 000951          285 TLINGFVKEGKIQVASRVFDEMSMLNFSPNSITYNELIDGHCCKGNFKEAFRLLAMMEEMGLRPNEVSYGALLNGFCKHA  364 (1211)
Q Consensus       285 ~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g  364 (1211)
                      .+|..+.+.+........++.+...+ ..+...+|.+|..|++.+ ..+.++.+..      .++.+....+++.|.+.+
T Consensus        12 ~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~------~~~~yd~~~~~~~c~~~~   83 (140)
T smart00299       12 EVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN------KSNHYDIEKVGKLCEKAK   83 (140)
T ss_pred             HHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh------ccccCCHHHHHHHHHHcC
Confidence            34444444555555555555555544 244445555555555432 2233333321      122333344555555555


Q ss_pred             ChHHHHHHHHH
Q 000951          365 KFDLARSLLER  375 (1211)
Q Consensus       365 ~~~~a~~l~~~  375 (1211)
                      .++++.-++.+
T Consensus        84 l~~~~~~l~~k   94 (140)
T smart00299       84 LYEEAVELYKK   94 (140)
T ss_pred             cHHHHHHHHHh
Confidence            55555554443

>smart00299 CLH Clathrin heavy chain repeat homology

Probab=91.34  E-value=9.6  Score=36.25  Aligned_cols=40  Identities=5%  Similarity=0.126  Sum_probs=17.0

Q ss_pred             HHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 000951          216 LLNWYCKKGRYKAAFKLIDCMASKGIEADVCTYNMFIDDLC  256 (1211)
Q Consensus       216 li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~  256 (1211)
                      ++..+...+.......+++.+...+ ..+...++.++..|+
T Consensus        13 vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~   52 (140)
T smart00299       13 VVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYA   52 (140)
T ss_pred             HHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHH
Confidence            3444444444444444444444433 133334444444444

>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]

Probab=90.99  E-value=47  Score=40.81  Aligned_cols=224  Identities=13%  Similarity=0.038  Sum_probs=117.4

Q ss_pred             HHHhcCcHHHHHHHHHHHHHCCCCCC-------hhhHHHHHHH-HHhhcchhhHHHHHHHHHHcC----CCCChhHHHHH
Q 000951          815 KCCEAGEMGKAFDLFNIMNMLGVVPD-------TNTQDAIIMG-LKRIAAFQESHFVLRGMAEKG----LTPKCTQYITL  882 (1211)
Q Consensus       815 ~~~~~g~~~~A~~~~~~~~~~~~~~~-------~~~~~~l~~~-~~~~g~~~eA~~~~~~~~~~g----~~p~~~~~~~l  882 (1211)
                      ......++++|..+..++...-..|+       ...|+.+-.. ....|++++|..+.+..+..=    ..+....+..+
T Consensus       424 ~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~  503 (894)
T COG2909         424 LLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVL  503 (894)
T ss_pred             HHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhh
Confidence            34455677777777776643211222       2244444432 235677888888888877611    11233667778


Q ss_pred             HHHHHhcCChhhHHHHHHHHHHcCCCCchHH---HHHH--HHHHHhcCC--HHHHHHHHHHHHhCC--ccc-C---HHHH
Q 000951          883 INGMCRVGNFQGAFKLKDEMEALGISSSDVA---ESAM--VRGLAHCGK--VEEAMLVLNRMLRMR--LVP-T---IATF  949 (1211)
Q Consensus       883 ~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~---~~~l--~~~~~~~g~--~~eA~~~~~~~~~~~--~~p-~---~~~~  949 (1211)
                      +.+..-.|++++|..+...+.+..-.-+...   |..+  ..++..+|+  +++....|...-+..  -.| .   ..+.
T Consensus       504 ~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r  583 (894)
T COG2909         504 GEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIR  583 (894)
T ss_pred             hHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHH
Confidence            8888888999999988888765422223332   2222  445667774  444444444443321  111 1   1233


Q ss_pred             HHHHHHhhhhCCHHHHHHH----HHHHHhcCCCC-chH-HHHHHHHHHHhCCChhHHHHHHHHHHHcCCccCh----hhH
Q 000951          950 TTLIHKFCKEAKFVDALKL----KGTMELSGVKL-DVV-SYNVLISGLCANGDVMPAFELYEEMKHKGLCPNS----TTY 1019 (1211)
Q Consensus       950 ~~L~~~~~~~g~~~~A~~~----~~~~~~~~~~p-~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~p~~----~~~ 1019 (1211)
                      ..+.+++.+   ++++..-    ++.-......| +.. .+..|+..+...|+.++|.....++......+.+    ...
T Consensus       584 ~~ll~~~~r---~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~  660 (894)
T COG2909         584 AQLLRAWLR---LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAA  660 (894)
T ss_pred             HHHHHHHHH---HhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHH
Confidence            334444333   4444332    22111221112 222 2347788888999999998888777654333322    333


Q ss_pred             HHHHHHH--HhcccchHHHHHHHH
Q 000951         1020 SVLIDAI--SKKENNLVKGEILLK 1041 (1211)
Q Consensus      1020 ~~l~~~~--~~~~~~~~~a~~~~~ 1041 (1211)
                      ++.++..  ...|+..+++..+++
T Consensus       661 ~~~v~~~lwl~qg~~~~a~~~l~~  684 (894)
T COG2909         661 AYKVKLILWLAQGDKELAAEWLLK  684 (894)
T ss_pred             HHHhhHHHhcccCCHHHHHHHHHh
Confidence            3444433  334666664444444

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=90.82  E-value=0.47  Score=31.88  Aligned_cols=32  Identities=6%  Similarity=0.061  Sum_probs=23.0

Q ss_pred             HHHHHHHHHhhhhCCHHHHHHHHHHHHhcCCCCc
Q 000951          947 ATFTTLIHKFCKEAKFVDALKLKGTMELSGVKLD  980 (1211)
Q Consensus       947 ~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~p~  980 (1211)
                      ..|..+|.++...|++++|++.|+.....  .|+
T Consensus         2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l--~p~   33 (34)
T PF07719_consen    2 EAWYYLGQAYYQLGNYEEAIEYFEKALEL--DPN   33 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHH--STT
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHH--CcC
Confidence            46777888888888888888887766655  554

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=90.82  E-value=43  Score=40.10  Aligned_cols=120  Identities=13%  Similarity=0.079  Sum_probs=66.4

Q ss_pred             HHHHhcCCHHHHHHHHHHHH--------HCCCCCCHHHH-----HHHHHHHHcCCCHHHHHHHHHHhhhCCCCccHHHHH
Q 000951          533 DGYGTLGDGLKAFSMFDEMV--------KLGHHPSIFTY-----GSLLKGLCKGGNLKEAKRFLNSLHHIPSAVDTVAYN  599 (1211)
Q Consensus       533 ~~~~~~g~~~~A~~~~~~m~--------~~~~~p~~~~~-----~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~  599 (1211)
                      .++.+.-++++-+.+.+++.        .-|++.+..-|     ..+++-+...+.+..|.++-..+...... ...+|.
T Consensus       397 k~~l~~~~~d~~~~v~~~lrVln~~r~~~~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~-~~~Vl~  475 (829)
T KOG2280|consen  397 KASLRTPNPDEYMRVCRELRVLNALRDVRIGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQ-GDRVLL  475 (829)
T ss_pred             ccccccCChHHHHHHHHHHHHHhhhcccccCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCcccc-ccHHHH
Confidence            33445555555554444332        23555444333     34566667778888888876665332222 246677


Q ss_pred             HHHHHHHHcCC--HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHH
Q 000951          600 TILAETCKSGN--LWEAIVLLDEMVQFNLLPDRYTYTILLAGLCRKGKVVSALLFFE  654 (1211)
Q Consensus       600 ~li~~~~~~g~--~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~  654 (1211)
                      .....+.+..+  -+++++..++=+.... -+..+|..+..--...|+.+-|..+++
T Consensus       476 ~Wa~~kI~~~d~~d~~vld~I~~kls~~~-~~~iSy~~iA~~Ay~~GR~~LA~kLle  531 (829)
T KOG2280|consen  476 EWARRKIKQSDKMDEEVLDKIDEKLSAKL-TPGISYAAIARRAYQEGRFELARKLLE  531 (829)
T ss_pred             HHHHHHHhccCccchHHHHHHHHHhcccC-CCceeHHHHHHHHHhcCcHHHHHHHHh
Confidence            77777776532  2223333332222112 245567777777778899998887765

>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus

Probab=90.56  E-value=13  Score=33.87  Aligned_cols=61  Identities=26%  Similarity=0.360  Sum_probs=31.9

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 000951          390 SVIDGLCKCGLLDEAMQLFNKMFKDGLNPDLITFSVLINGFCKVGMTRKAKAVLCKMYRDGL  451 (1211)
Q Consensus       390 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~  451 (1211)
                      .-++.+...|+-+.-.+++.++.+.+ .+++.....+..+|.+.|+..++.+++.++-+.|+
T Consensus        91 ~ALd~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~  151 (161)
T PF09205_consen   91 LALDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEACEKGL  151 (161)
T ss_dssp             HHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred             HHHHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence            34455556666666666666655422 45555556666666666666666666666666653

Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.

>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=90.54  E-value=23  Score=36.49  Aligned_cols=25  Identities=12%  Similarity=0.117  Sum_probs=15.4

Q ss_pred             HHHHHHHHccCChHHHHHHHHHHHH
Q 000951          740 NILLHGYSKKKDLLMCSMLLNTMKM  764 (1211)
Q Consensus       740 ~~l~~~~~~~g~~~~A~~~~~~~~~  764 (1211)
                      ..|+..|...+++.+-.++++++.+
T Consensus       149 tKLgkl~fd~~e~~kl~KIlkqLh~  173 (440)
T KOG1464|consen  149 TKLGKLYFDRGEYTKLQKILKQLHQ  173 (440)
T ss_pred             chHhhhheeHHHHHHHHHHHHHHHH
Confidence            4456666666666666666666654

>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]

Probab=90.21  E-value=2  Score=44.24  Aligned_cols=103  Identities=16%  Similarity=0.205  Sum_probs=66.7

Q ss_pred             ChHHHHHHHHHHH-----HcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHH
Q 000951          104 NPSVFDLLIRVYL-----REGMVEYALETFQLMGFRGFNPSVYTCNMMLSFMLKDRRVDSVWLLFDDMLDRKICPNVATF  178 (1211)
Q Consensus       104 ~~~~~~~l~~~~~-----~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~l~~~~~~~~a~~~~~~m~~~~~~~~~~~~  178 (1211)
                      +...|...+..+.     +.+.++-.-..+..|.+.|+..|..+|+.||+++-|..-...  .+|+..            
T Consensus        66 dK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~--nvfQ~~------------  131 (406)
T KOG3941|consen   66 DKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQ--NVFQKV------------  131 (406)
T ss_pred             cHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccH--HHHHHH------------
Confidence            3344444444443     235666677778889999999999999999988865443211  111111            


Q ss_pred             HHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHHcCC
Q 000951          179 NILINVSCVEGKLKKAGYLLRKMEESGYVPNIVTYNTLLNWYCKKGR  225 (1211)
Q Consensus       179 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~  225 (1211)
                        .++ |-  .+-+-+..++++|...|+-||..+-..+++.+.+.|-
T Consensus       132 --F~H-YP--~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~  173 (406)
T KOG3941|consen  132 --FLH-YP--QQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNF  173 (406)
T ss_pred             --Hhh-Cc--hhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence              111 11  1234577888899888999998888888888877664

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=90.04  E-value=0.56  Score=32.17  Aligned_cols=26  Identities=12%  Similarity=0.109  Sum_probs=20.7

Q ss_pred             HHHHHHHHHHhcCChhhHHHHHHHHH
Q 000951          878 QYITLINGMCRVGNFQGAFKLKDEME  903 (1211)
Q Consensus       878 ~~~~l~~~~~~~g~~~eA~~~~~~~~  903 (1211)
                      +|..|+.+|.+.|++++|+++|++++
T Consensus         1 al~~Lg~~~~~~g~~~~Ai~~y~~aL   26 (36)
T PF13176_consen    1 ALNNLGRIYRQQGDYEKAIEYYEQAL   26 (36)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            46778888888888888888888865

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=89.81  E-value=2.3  Score=41.18  Aligned_cols=32  Identities=9%  Similarity=0.130  Sum_probs=21.7

Q ss_pred             hhhHHHHHHHHHHcCCCCCh-hHHHHHHHHHHhcC
Q 000951          857 FQESHFVLRGMAEKGLTPKC-TQYITLINGMCRVG  890 (1211)
Q Consensus       857 ~~eA~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g  890 (1211)
                      +++|+.-|++++.  ++|+. .++..+++++...+
T Consensus        51 iedAisK~eeAL~--I~P~~hdAlw~lGnA~ts~A   83 (186)
T PF06552_consen   51 IEDAISKFEEALK--INPNKHDALWCLGNAYTSLA   83 (186)
T ss_dssp             HHHHHHHHHHHHH--H-TT-HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHh--cCCchHHHHHHHHHHHHHHH
Confidence            4566667777777  88874 78888888877554

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>KOG2471 consensus TPR repeat-containing protein [General function prediction only]

Probab=89.75  E-value=12  Score=42.09  Aligned_cols=19  Identities=11%  Similarity=-0.104  Sum_probs=13.3

Q ss_pred             hhhcCcchhhhhHHHHhhccc
Q 000951         1140 EKLFCPCCLLHYLLKLIYQGS 1160 (1211)
Q Consensus      1140 ~~~~~~~~~~~~~~~~~~~~~ 1160 (1211)
                      -|.-|.||  --+-||+--+.
T Consensus       534 kLLq~~~l--S~~~kfLGHiY  552 (696)
T KOG2471|consen  534 KLLQLADL--SKIYKFLGHIY  552 (696)
T ss_pred             HHHhhhhh--hhHHHHHHHHH
Confidence            47778888  77777766554

>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=89.15  E-value=30  Score=35.73  Aligned_cols=119  Identities=7%  Similarity=-0.044  Sum_probs=55.1

Q ss_pred             cCChHHHHHHHHHHHHCCCCCCHH---HHHHHHHHHHccCChHHHHHHHHHHHHC---CC--CCCHHHHHHHHHHHHhcC
Q 000951          714 MGNMMMANDLLSTMRSRKLCPSLA---TYNILLHGYSKKKDLLMCSMLLNTMKME---GL--LPDKLTCHSLILGFCETG  785 (1211)
Q Consensus       714 ~g~~~~A~~~~~~~~~~~~~p~~~---~~~~l~~~~~~~g~~~~A~~~~~~~~~~---g~--~p~~~~~~~l~~~~~~~g  785 (1211)
                      ...+++|..-|+++.+..-.....   +...++..+.+.|++++-++.|.+++--   .+  .-+.-+.++++.--..+.
T Consensus        40 e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~  119 (440)
T KOG1464|consen   40 EDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSK  119 (440)
T ss_pred             ccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhh
Confidence            346677777777776542222222   2334455666667777666666666531   00  012223444444334444


Q ss_pred             ChHHHHHHHHHHHHc--CCCCC---HhhHHHHHHHHHhcCcHHHHHHHHHHH
Q 000951          786 MLEVGFKFLKKMIAE--GTMVD---CFTFNVLMRKCCEAGEMGKAFDLFNIM  832 (1211)
Q Consensus       786 ~~~~A~~~~~~~~~~--~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~  832 (1211)
                      +.+.-..+|+..+..  ....+   ..+-..|+..|...|++.+-.++++++
T Consensus       120 ~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqL  171 (440)
T KOG1464|consen  120 NMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQL  171 (440)
T ss_pred             hhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHH
Confidence            444444444443332  00101   122234455555555555555555444

>PF13170 DUF4003: Protein of unknown function (DUF4003)

Probab=88.96  E-value=16  Score=39.79  Aligned_cols=93  Identities=12%  Similarity=0.256  Sum_probs=48.5

Q ss_pred             HHHHHHHHHHHCCC---CCCHHHHHHHHHHHHHcCC----HHHHHHHHHHHHhCCCCCC-hHHHHHHHHHHHhcCC---H
Q 000951          263 KGYLLLKNMRKRMI---TPNEVTYNTLINGFVKEGK----IQVASRVFDEMSMLNFSPN-SITYNELIDGHCCKGN---F  331 (1211)
Q Consensus       263 ~A~~~~~~m~~~~~---~p~~~~~~~li~~~~~~g~----~~~A~~~~~~m~~~g~~~~-~~~~~~li~~~~~~g~---~  331 (1211)
                      .|..+|+.|++..+   .++..++..++..  ...+    .+.+..+|+.+.+.|+..+ ..-+.+-|-+++....   +
T Consensus       121 ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v  198 (297)
T PF13170_consen  121 RAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVEELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKV  198 (297)
T ss_pred             HHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHH
Confidence            34455555554432   2344455555433  2222    3456666777776666543 3234444434433221   4


Q ss_pred             HHHHHHHHHHHHCCCCcCHhHHHHHH
Q 000951          332 KEAFRLLAMMEEMGLRPNEVSYGALL  357 (1211)
Q Consensus       332 ~~A~~~~~~m~~~g~~p~~~t~~~ll  357 (1211)
                      ..+.++++.+.+.|+++....|..+.
T Consensus       199 ~r~~~l~~~l~~~~~kik~~~yp~lG  224 (297)
T PF13170_consen  199 ARVIELYNALKKNGVKIKYMHYPTLG  224 (297)
T ss_pred             HHHHHHHHHHHHcCCccccccccHHH
Confidence            46677777777777777666665543

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=88.85  E-value=4.3  Score=40.33  Aligned_cols=94  Identities=16%  Similarity=0.027  Sum_probs=50.7

Q ss_pred             HHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-------Hh
Q 000951          737 ATYNILLHGYSKKKDLLMCSMLLNTMKMEGLLPDKL--TCHSLILGFCETGMLEVGFKFLKKMIAEGTMVD-------CF  807 (1211)
Q Consensus       737 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-------~~  807 (1211)
                      ..+..++..|.+.|+.++|++.|.++.+....|...  .+..++......+++..+.....++...--...       ..
T Consensus        37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk  116 (177)
T PF10602_consen   37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK  116 (177)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence            345556666666666666666666666654444322  334456666666777777766666554311111       11


Q ss_pred             hHHHHHHHHHhcCcHHHHHHHHHHH
Q 000951          808 TFNVLMRKCCEAGEMGKAFDLFNIM  832 (1211)
Q Consensus       808 ~~~~l~~~~~~~g~~~~A~~~~~~~  832 (1211)
                      ++..|  .+...++|.+|-+.|-..
T Consensus       117 ~~~gL--~~l~~r~f~~AA~~fl~~  139 (177)
T PF10602_consen  117 VYEGL--ANLAQRDFKEAAELFLDS  139 (177)
T ss_pred             HHHHH--HHHHhchHHHHHHHHHcc
Confidence            12222  233456777777666544

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus

Probab=88.13  E-value=21  Score=32.72  Aligned_cols=60  Identities=13%  Similarity=0.143  Sum_probs=26.9

Q ss_pred             HHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCC
Q 000951          707 VMDGFSRMGNMMMANDLLSTMRSRKLCPSLATYNILLHGYSKKKDLLMCSMLLNTMKMEGL  767 (1211)
Q Consensus       707 li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~  767 (1211)
                      .++.+.++|+-++-.++...+.+ +-.+++.....++.+|.+-|+..++-++++++-++|+
T Consensus        92 ALd~lv~~~kkDqLdki~~~l~k-n~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~  151 (161)
T PF09205_consen   92 ALDILVKQGKKDQLDKIYNELKK-NEEINPEFLVKIANAYKKLGNTREANELLKEACEKGL  151 (161)
T ss_dssp             HHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred             HHHHHHHhccHHHHHHHHHHHhh-ccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence            33444455555555555555443 1233444555555555555555555555555555554

Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=87.81  E-value=4.6  Score=40.13  Aligned_cols=63  Identities=11%  Similarity=0.118  Sum_probs=42.9

Q ss_pred             hhHHHHHHHHHhhcchhhHHHHHHHHHHcCCCCCh--hHHHHHHHHHHhcCChhhHHHHHHHHHH
Q 000951          842 NTQDAIIMGLKRIAAFQESHFVLRGMAEKGLTPKC--TQYITLINGMCRVGNFQGAFKLKDEMEA  904 (1211)
Q Consensus       842 ~~~~~l~~~~~~~g~~~eA~~~~~~~~~~g~~p~~--~~~~~l~~~~~~~g~~~eA~~~~~~~~~  904 (1211)
                      ..+..++.-|.+.|+.++|++.|.++.+....|..  ..+..++......++|..+.....++..
T Consensus        37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~  101 (177)
T PF10602_consen   37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES  101 (177)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence            34556666677777777777777777765555543  5566777777777777777777777753

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]

Probab=87.60  E-value=3.4  Score=42.60  Aligned_cols=32  Identities=31%  Similarity=0.366  Sum_probs=18.9

Q ss_pred             HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 000951          439 AKAVLCKMYRDGLVPNKIIYSTLIYYFCKMGK  470 (1211)
Q Consensus       439 A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~  470 (1211)
                      ++.++++|...|+.||..+-..++.++.+.+-
T Consensus       142 ~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~  173 (406)
T KOG3941|consen  142 AIKVLEQMEWHGVMPDKEIEDILVNAFGRWNF  173 (406)
T ss_pred             HHHHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence            45556666666666666666666666655443

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=87.56  E-value=4.2  Score=43.13  Aligned_cols=73  Identities=14%  Similarity=0.109  Sum_probs=54.3

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCChHHHHHHHHHHHH-----CCCCCCHHHHHH
Q 000951          703 AFNAVMDGFSRMGNMMMANDLLSTMRSRKLCP-SLATYNILLHGYSKKKDLLMCSMLLNTMKM-----EGLLPDKLTCHS  776 (1211)
Q Consensus       703 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~g~~p~~~~~~~  776 (1211)
                      ++..++..+..+|+.+.+...++++...  .| +...|..++.+|.+.|+...|+..|+++.+     .|+.|...+...
T Consensus       155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~--dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~  232 (280)
T COG3629         155 ALTKLAEALIACGRADAVIEHLERLIEL--DPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL  232 (280)
T ss_pred             HHHHHHHHHHhcccHHHHHHHHHHHHhc--CccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence            4556677777788888888888888853  56 788888888888888888888888887765     366666555543


Q ss_pred             H
Q 000951          777 L  777 (1211)
Q Consensus       777 l  777 (1211)
                      .
T Consensus       233 y  233 (280)
T COG3629         233 Y  233 (280)
T ss_pred             H
Confidence            3

>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=87.00  E-value=7.9  Score=39.24  Aligned_cols=83  Identities=12%  Similarity=0.125  Sum_probs=37.2

Q ss_pred             HHhcCcHHHHHHHHHHHHHCCCCCChh-hHHHHHHHHHhhcchhhHHHHHHHHHHcCCCCCh-hHHHHHHHHHHhcCChh
Q 000951          816 CCEAGEMGKAFDLFNIMNMLGVVPDTN-TQDAIIMGLKRIAAFQESHFVLRGMAEKGLTPKC-TQYITLINGMCRVGNFQ  893 (1211)
Q Consensus       816 ~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~eA~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~  893 (1211)
                      |....+++.|+..|.+++.  +.|... -|.+-+..+.+..+++.+..-.+++++  +.|+. .....++.+......++
T Consensus        20 ~f~~k~y~~ai~~y~raI~--~nP~~~~Y~tnralchlk~~~~~~v~~dcrralq--l~~N~vk~h~flg~~~l~s~~~~   95 (284)
T KOG4642|consen   20 CFIPKRYDDAIDCYSRAIC--INPTVASYYTNRALCHLKLKHWEPVEEDCRRALQ--LDPNLVKAHYFLGQWLLQSKGYD   95 (284)
T ss_pred             ccchhhhchHHHHHHHHHh--cCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHh--cChHHHHHHHHHHHHHHhhcccc
Confidence            3333445555555544443  233332 223334444444555555554555444  44443 23334444444444445


Q ss_pred             hHHHHHHHH
Q 000951          894 GAFKLKDEM  902 (1211)
Q Consensus       894 eA~~~~~~~  902 (1211)
                      +|+..+.++
T Consensus        96 eaI~~Lqra  104 (284)
T KOG4642|consen   96 EAIKVLQRA  104 (284)
T ss_pred             HHHHHHHHH
Confidence            555444444

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=85.92  E-value=21  Score=34.33  Aligned_cols=50  Identities=22%  Similarity=0.095  Sum_probs=27.6

Q ss_pred             hcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccCChHHHHHHHHHHHH
Q 000951          713 RMGNMMMANDLLSTMRSRKLCPS-LATYNILLHGYSKKKDLLMCSMLLNTMKM  764 (1211)
Q Consensus       713 ~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  764 (1211)
                      +.++.+++..++..+.-  +.|. ...-..-+..+...|+|.+|+.+++.+.+
T Consensus        22 ~~~~~~D~e~lL~ALrv--LRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~   72 (160)
T PF09613_consen   22 RLGDPDDAEALLDALRV--LRPEFPELDLFDGWLHIVRGDWDDALRLLRELEE   72 (160)
T ss_pred             ccCChHHHHHHHHHHHH--hCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhc
Confidence            45566666666666652  3442 22222233445566666666666666654

>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]

Probab=85.78  E-value=71  Score=36.49  Aligned_cols=95  Identities=14%  Similarity=0.065  Sum_probs=46.5

Q ss_pred             CHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHH
Q 000951          735 SLATYNILLHGYSKKKDLLMCSMLLNTMKMEGLLPDKLTCHSLILGFCETGMLEVGFKFLKKMIAEGTMVDCFTFNVLMR  814 (1211)
Q Consensus       735 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~  814 (1211)
                      |.....+++..+..+-++.-...+-.+|+.  +..+...|..++..|... ..++-..+++++.+..+. |...-..|+.
T Consensus        65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~--~~e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa~  140 (711)
T COG1747          65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLE--YGESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELAD  140 (711)
T ss_pred             cchHHHHHHHHhccchHHHHHHHHHHHHHH--hcchHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHHH
Confidence            444444555555555555555555555555  223445555555555554 334445555555553221 2333333444


Q ss_pred             HHHhcCcHHHHHHHHHHHHH
Q 000951          815 KCCEAGEMGKAFDLFNIMNM  834 (1211)
Q Consensus       815 ~~~~~g~~~~A~~~~~~~~~  834 (1211)
                      .|.+ ++.+.+...|.++..
T Consensus       141 ~yEk-ik~sk~a~~f~Ka~y  159 (711)
T COG1747         141 KYEK-IKKSKAAEFFGKALY  159 (711)
T ss_pred             HHHH-hchhhHHHHHHHHHH
Confidence            4433 555555555555543

>KOG2471 consensus TPR repeat-containing protein [General function prediction only]

Probab=85.56  E-value=71  Score=36.25  Aligned_cols=108  Identities=12%  Similarity=-0.006  Sum_probs=57.6

Q ss_pred             HHHHHcCCHHHHHHHHHHH---HhCCCCCCH-----HHHHHHHHHHHhcCChHHHHHHHHHHHH-------CCCCCC---
Q 000951          674 DGLFKAGQSKAAMHISKIM---DKEGVYPDT-----IAFNAVMDGFSRMGNMMMANDLLSTMRS-------RKLCPS---  735 (1211)
Q Consensus       674 ~~~~~~g~~~~A~~~~~~~---~~~g~~~~~-----~~~~~li~~~~~~g~~~~A~~~~~~~~~-------~~~~p~---  735 (1211)
                      ..+.-.|++.+|.+.+...   ...|....+     ..||.+.-...+.|.+.-+..+|.+...       .|+.|.   
T Consensus       248 q~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~  327 (696)
T KOG2471|consen  248 QLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTF  327 (696)
T ss_pred             HHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcce
Confidence            3445567777776655443   112211111     1235555555666777777777766653       243331   


Q ss_pred             -------HHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 000951          736 -------LATYNILLHGYSKKKDLLMCSMLLNTMKMEGLLPDKLTCHSLILGFC  782 (1211)
Q Consensus       736 -------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~  782 (1211)
                             .......+-.|...|++-.|.+.|.+.... +..++..|..+..+|.
T Consensus       328 tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~v-fh~nPrlWLRlAEcCi  380 (696)
T KOG2471|consen  328 TLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHV-FHRNPRLWLRLAECCI  380 (696)
T ss_pred             ehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHH-HhcCcHHHHHHHHHHH
Confidence                   111222344566677777777777776653 4446666666666554

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=84.47  E-value=13  Score=38.27  Aligned_cols=65  Identities=12%  Similarity=0.014  Sum_probs=32.9

Q ss_pred             hHHHHHHHHHHhcCChh-------hHHHHHHHHHHcCCCC-----chHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 000951          877 TQYITLINGMCRVGNFQ-------GAFKLKDEMEALGISS-----SDVAESAMVRGLAHCGKVEEAMLVLNRMLRMR  941 (1211)
Q Consensus       877 ~~~~~l~~~~~~~g~~~-------eA~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~  941 (1211)
                      ..+..++..|...|+.+       .|++.|.++.+....|     ...+.+.+|.+..+.|++++|.+.|.+++..+
T Consensus       119 ~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~  195 (214)
T PF09986_consen  119 GLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSK  195 (214)
T ss_pred             HHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCC
Confidence            34555566666666533       3444444443221111     12344455666666666666666666666543

>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]

Probab=84.33  E-value=4.4  Score=46.21  Aligned_cols=102  Identities=16%  Similarity=0.110  Sum_probs=80.0

Q ss_pred             HhhcchhhHHHHHHHHHHcCCCCC--hhHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHH
Q 000951          852 KRIAAFQESHFVLRGMAEKGLTPK--CTQYITLINGMCRVGNFQGAFKLKDEMEALGISSSDVAESAMVRGLAHCGKVEE  929 (1211)
Q Consensus       852 ~~~g~~~eA~~~~~~~~~~g~~p~--~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~e  929 (1211)
                      ...|+...|...+..++.  ..|.  .+....|++...+.|...+|-.++.+.+... ...+..+..++.++....+.+.
T Consensus       618 r~~gn~~~a~~cl~~a~~--~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~-~sepl~~~~~g~~~l~l~~i~~  694 (886)
T KOG4507|consen  618 RAVGNSTFAIACLQRALN--LAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAIN-SSEPLTFLSLGNAYLALKNISG  694 (886)
T ss_pred             eecCCcHHHHHHHHHHhc--cChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhc-ccCchHHHhcchhHHHHhhhHH
Confidence            356888888888888776  5664  3677888888888888888998888888764 5556677788888888899999


Q ss_pred             HHHHHHHHHhCCcccCHHHHHHHHHHhh
Q 000951          930 AMLVLNRMLRMRLVPTIATFTTLIHKFC  957 (1211)
Q Consensus       930 A~~~~~~~~~~~~~p~~~~~~~L~~~~~  957 (1211)
                      |++.|+++++..++ ++.+-+.|..+-|
T Consensus       695 a~~~~~~a~~~~~~-~~~~~~~l~~i~c  721 (886)
T KOG4507|consen  695 ALEAFRQALKLTTK-CPECENSLKLIRC  721 (886)
T ss_pred             HHHHHHHHHhcCCC-ChhhHHHHHHHHH
Confidence            99999999888766 7777777766555

>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=84.30  E-value=1  Score=47.92  Aligned_cols=95  Identities=11%  Similarity=-0.011  Sum_probs=69.8

Q ss_pred             HhcCCHHHHHHHHHHHHhCCcccCHHHHHHHHHHhhhhCCHHHHHHHHHHHHhcCCCCchH-HHHHHHHHHHhCCChhHH
Q 000951          922 AHCGKVEEAMLVLNRMLRMRLVPTIATFTTLIHKFCKEAKFVDALKLKGTMELSGVKLDVV-SYNVLISGLCANGDVMPA 1000 (1211)
Q Consensus       922 ~~~g~~~eA~~~~~~~~~~~~~p~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~a 1000 (1211)
                      ...|.+++|++.|..+++.++. ....|..-+.++.+.+++..|+.-+..  +..++||.. .|-.-+.+....|.|++|
T Consensus       125 ln~G~~~~ai~~~t~ai~lnp~-~a~l~~kr~sv~lkl~kp~~airD~d~--A~ein~Dsa~~ykfrg~A~rllg~~e~a  201 (377)
T KOG1308|consen  125 LNDGEFDTAIELFTSAIELNPP-LAILYAKRASVFLKLKKPNAAIRDCDF--AIEINPDSAKGYKFRGYAERLLGNWEEA  201 (377)
T ss_pred             hcCcchhhhhcccccccccCCc-hhhhcccccceeeeccCCchhhhhhhh--hhccCcccccccchhhHHHHHhhchHHH
Confidence            3567788888888888888754 777777788888888888888887553  344577766 555555566777888888


Q ss_pred             HHHHHHHHHcCCccChhhH
Q 000951         1001 FELYEEMKHKGLCPNSTTY 1019 (1211)
Q Consensus      1001 ~~~~~~~~~~g~~p~~~~~ 1019 (1211)
                      .+.+....+.+..+....|
T Consensus       202 a~dl~~a~kld~dE~~~a~  220 (377)
T KOG1308|consen  202 AHDLALACKLDYDEANSAT  220 (377)
T ss_pred             HHHHHHHHhccccHHHHHH
Confidence            8888888777776665433

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=83.98  E-value=1.5  Score=29.41  Aligned_cols=28  Identities=21%  Similarity=0.258  Sum_probs=15.4

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 000951          913 AESAMVRGLAHCGKVEEAMLVLNRMLRM  940 (1211)
Q Consensus       913 ~~~~l~~~~~~~g~~~eA~~~~~~~~~~  940 (1211)
                      +|..++.+|...|++++|.+.|+++++.
T Consensus         3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~   30 (34)
T PF13181_consen    3 AYYNLGKIYEQLGDYEEALEYFEKALEL   30 (34)
T ss_dssp             HHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            3445555555555555555555555554

...

>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]

Probab=83.79  E-value=1.1e+02  Score=36.88  Aligned_cols=51  Identities=14%  Similarity=0.118  Sum_probs=24.1

Q ss_pred             HHHhhcchhhHHHHHHHHHHcCCCCCh--hHHHHHHHHHHhcCChhhHHHHHHH
Q 000951          850 GLKRIAAFQESHFVLRGMAEKGLTPKC--TQYITLINGMCRVGNFQGAFKLKDE  901 (1211)
Q Consensus       850 ~~~~~g~~~eA~~~~~~~~~~g~~p~~--~~~~~l~~~~~~~g~~~eA~~~~~~  901 (1211)
                      ++..-|+-++|-.+.++++.. .+|-.  .-...++.+|+..|+..--.+++.-
T Consensus       510 aL~~ygrqe~Ad~lI~el~~d-kdpilR~~Gm~t~alAy~GTgnnkair~lLh~  562 (929)
T KOG2062|consen  510 ALVVYGRQEDADPLIKELLRD-KDPILRYGGMYTLALAYVGTGNNKAIRRLLHV  562 (929)
T ss_pred             HHHHhhhhhhhHHHHHHHhcC-CchhhhhhhHHHHHHHHhccCchhhHHHhhcc
Confidence            444455555666666665531 13311  2234455555555554444444333

>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1

Probab=83.47  E-value=46  Score=32.44  Aligned_cols=134  Identities=17%  Similarity=0.221  Sum_probs=68.4

Q ss_pred             HHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 000951          231 KLIDCMASKGIEADVCTYNMFIDDLCRNNRSAKGYLLLKNMRKRMITPNEVTYNTLINGFVKEGKIQVASRVFDEMSMLN  310 (1211)
Q Consensus       231 ~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g  310 (1211)
                      ++...+...+++|+...|..+|+.+.+.|++..    +..+...++-||.......+-.+.  +....+.++=-+|.++ 
T Consensus        15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~----L~qllq~~Vi~DSk~lA~~LLs~~--~~~~~~~Ql~lDMLkR-   87 (167)
T PF07035_consen   15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQ----LHQLLQYHVIPDSKPLACQLLSLG--NQYPPAYQLGLDMLKR-   87 (167)
T ss_pred             HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHH----HHHHHhhcccCCcHHHHHHHHHhH--ccChHHHHHHHHHHHH-
Confidence            444455556666666666666666666666443    333444444455444433332222  1223333333333322 


Q ss_pred             CCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHhHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 000951          311 FSPNSITYNELIDGHCCKGNFKEAFRLLAMMEEMGLRPNEVSYGALLNGFCKHAKFDLARSLLERMRT  378 (1211)
Q Consensus       311 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~l~~~~~~  378 (1211)
                         =...+..++..+...|++-+|+++.+.....    +......++.+..+.+|...=..++....+
T Consensus        88 ---L~~~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~  148 (167)
T PF07035_consen   88 ---LGTAYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRFFEE  148 (167)
T ss_pred             ---hhhhHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence               0114666777888888888888887765322    222234455555555554444444444333

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=83.25  E-value=24  Score=33.86  Aligned_cols=52  Identities=17%  Similarity=0.167  Sum_probs=31.9

Q ss_pred             HhhcchhhHHHHHHHHHHcCCCCCh-hHHHHHHHHHHhcCChhhHHHHHHHHHHc
Q 000951          852 KRIAAFQESHFVLRGMAEKGLTPKC-TQYITLINGMCRVGNFQGAFKLKDEMEAL  905 (1211)
Q Consensus       852 ~~~g~~~eA~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~eA~~~~~~~~~~  905 (1211)
                      .+.+..+++..++..+.-  +.|.. ..-..-+..+...|+|.+|..+|+.+.+.
T Consensus        21 l~~~~~~D~e~lL~ALrv--LRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~   73 (160)
T PF09613_consen   21 LRLGDPDDAEALLDALRV--LRPEFPELDLFDGWLHIVRGDWDDALRLLRELEER   73 (160)
T ss_pred             HccCChHHHHHHHHHHHH--hCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhcc
Confidence            345566677777776666  66654 33333455566677777777777776543

>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex

Probab=83.22  E-value=96  Score=38.06  Aligned_cols=67  Identities=18%  Similarity=0.050  Sum_probs=40.4

Q ss_pred             HHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCC-------hhHHHHHHHHHHhCCCCCCHH
Q 000951          109 DLLIRVYLREGMVEYALETFQLMGFRGFNPSVYTCNMMLSFMLKDRR-------VDSVWLLFDDMLDRKICPNVA  176 (1211)
Q Consensus       109 ~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~l~~~~~-------~~~a~~~~~~m~~~~~~~~~~  176 (1211)
                      ..+|-.+.|+|.+++|.++...... .+......+-..+..+....+       -+....-|++..+.....|++
T Consensus       115 Wa~Iyy~LR~G~~~~A~~~~~~~~~-~~~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r~~~~~Dpy  188 (613)
T PF04097_consen  115 WALIYYCLRCGDYDEALEVANENRN-QFQKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRIRNSTDGDPY  188 (613)
T ss_dssp             HHHHHHHHTTT-HHHHHHHHHHTGG-GS-TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTTT-TTS-HH
T ss_pred             HHHHHHHHhcCCHHHHHHHHHHhhh-hhcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcCCCCCChH
Confidence            3566777899999999999955433 234555667777777766432       235666677665543322554

It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=82.92  E-value=2.1  Score=28.66  Aligned_cols=29  Identities=10%  Similarity=0.062  Sum_probs=21.0

Q ss_pred             HHHHHHHHHhhhhCCHHHHHHHHHHHHhc
Q 000951          947 ATFTTLIHKFCKEAKFVDALKLKGTMELS  975 (1211)
Q Consensus       947 ~~~~~L~~~~~~~g~~~~A~~~~~~~~~~  975 (1211)
                      .+|..++.+|...|++++|...|+...+.
T Consensus         2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~   30 (34)
T PF13181_consen    2 EAYYNLGKIYEQLGDYEEALEYFEKALEL   30 (34)
T ss_dssp             HHHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            36777777888888888888877765544

...

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=82.58  E-value=21  Score=41.24  Aligned_cols=132  Identities=17%  Similarity=0.122  Sum_probs=81.9

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 000951          668 MFTCLVDGLFKAGQSKAAMHISKIMDKEGVYPDTIAFNAVMDGFSRMGNMMMANDLLSTMRSRKLCPSLATYNILLHGYS  747 (1211)
Q Consensus       668 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~  747 (1211)
                      ..+.++..+.++|..++|+++         .+|+...   .+...+.|+++.|.++..+..      +..-|..|+++..
T Consensus       616 ~rt~va~Fle~~g~~e~AL~~---------s~D~d~r---Felal~lgrl~iA~~la~e~~------s~~Kw~~Lg~~al  677 (794)
T KOG0276|consen  616 IRTKVAHFLESQGMKEQALEL---------STDPDQR---FELALKLGRLDIAFDLAVEAN------SEVKWRQLGDAAL  677 (794)
T ss_pred             hhhhHHhHhhhccchHhhhhc---------CCChhhh---hhhhhhcCcHHHHHHHHHhhc------chHHHHHHHHHHh
Confidence            345566667777777777653         2332211   223456788888877766553      5677888888888


Q ss_pred             ccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCcHHHHHH
Q 000951          748 KKKDLLMCSMLLNTMKMEGLLPDKLTCHSLILGFCETGMLEVGFKFLKKMIAEGTMVDCFTFNVLMRKCCEAGEMGKAFD  827 (1211)
Q Consensus       748 ~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~  827 (1211)
                      ..+++..|.+.|.....         |..|+..+...|+-+--..+-....+.|.      .|.--.+|...|+++++.+
T Consensus       678 ~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~~g~------~N~AF~~~~l~g~~~~C~~  742 (794)
T KOG0276|consen  678 SAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKKQGK------NNLAFLAYFLSGDYEECLE  742 (794)
T ss_pred             hcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHhhcc------cchHHHHHHHcCCHHHHHH
Confidence            88888888888887765         33455566666665544444444444332      1222235667788888887


Q ss_pred             HHHHH
Q 000951          828 LFNIM  832 (1211)
Q Consensus       828 ~~~~~  832 (1211)
                      ++-+-
T Consensus       743 lLi~t  747 (794)
T KOG0276|consen  743 LLIST  747 (794)
T ss_pred             HHHhc
Confidence            76543

>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex

Probab=81.70  E-value=1.4e+02  Score=36.68  Aligned_cols=85  Identities=11%  Similarity=0.029  Sum_probs=33.1

Q ss_pred             HHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC-CCCHhhHHHHHHHHHh---c
Q 000951          744 HGYSKKKDLLMCSMLLNTMKMEGLLPDKLTCHSLILGFCETGMLEVGFKFLKKMIAEGT-MVDCFTFNVLMRKCCE---A  819 (1211)
Q Consensus       744 ~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~---~  819 (1211)
                      ..+.-.|+++.|++.+-.-  .+...|.+.+...   +...|-+......-..++.... .|...-+..|+..|.+   .
T Consensus       266 ~~LlLtgqFE~AI~~L~~~--~~~~~dAVH~AIa---L~~~gLL~~~~~~~~~lls~~~~~~~~ln~arLI~~Y~~~F~~  340 (613)
T PF04097_consen  266 QVLLLTGQFEAAIEFLYRN--EFNRVDAVHFAIA---LAYYGLLRVSDSSSAPLLSVDPGDPPPLNFARLIGQYTRSFEI  340 (613)
T ss_dssp             HHHHHTT-HHHHHHHHHT----T-HHHHHHHHHH---HHHTT------------------------HHHHHHHHHHTTTT
T ss_pred             HHHHHHhhHHHHHHHHHhh--ccCcccHHHHHHH---HHHcCCCCCCCccccceeeecCCCCCCcCHHHHHHHHHHHHhc
Confidence            4456678888888887661  1122344443322   2223333222222233332211 1112445666766765   3


Q ss_pred             CcHHHHHHHHHHHH
Q 000951          820 GEMGKAFDLFNIMN  833 (1211)
Q Consensus       820 g~~~~A~~~~~~~~  833 (1211)
                      .+..+|.++|--+.
T Consensus       341 td~~~Al~Y~~li~  354 (613)
T PF04097_consen  341 TDPREALQYLYLIC  354 (613)
T ss_dssp             T-HHHHHHHHHGGG
T ss_pred             cCHHHHHHHHHHHH
Confidence            46667777765554

It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.

>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1

Probab=81.50  E-value=55  Score=31.94  Aligned_cols=129  Identities=10%  Similarity=0.176  Sum_probs=75.8

Q ss_pred             HHHHhhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCC
Q 000951          128 FQLMGFRGFNPSVYTCNMMLSFMLKDRRVDSVWLLFDDMLDRKICPNVATFNILINVSCVEGKLKKAGYLLRKMEESGYV  207 (1211)
Q Consensus       128 ~~~~~~~g~~~~~~~~~~ll~~l~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~  207 (1211)
                      .+.+.+.+++|+...+..+++.+.+.|++.....+..    .++-+|.......+-.+  .+....+.++=-.|.++   
T Consensus        17 irSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qllq----~~Vi~DSk~lA~~LLs~--~~~~~~~~Ql~lDMLkR---   87 (167)
T PF07035_consen   17 IRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLLQ----YHVIPDSKPLACQLLSL--GNQYPPAYQLGLDMLKR---   87 (167)
T ss_pred             HHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHh----hcccCCcHHHHHHHHHh--HccChHHHHHHHHHHHH---
Confidence            3445567788888899999999999988766555544    34555555444443222  23345566665566543   


Q ss_pred             CCHh-HHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 000951          208 PNIV-TYNTLLNWYCKKGRYKAAFKLIDCMASKGIEADVCTYNMFIDDLCRNNRSAKGYLLLKNM  271 (1211)
Q Consensus       208 p~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m  271 (1211)
                        .. .+..++..+...|++-+|+++.......    +......++.+..+.+|...=..+++-.
T Consensus        88 --L~~~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff  146 (167)
T PF07035_consen   88 --LGTAYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRFF  146 (167)
T ss_pred             --hhhhHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHH
Confidence              12 4556677788888888888887765321    1222234555555555544433343333

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=81.15  E-value=19  Score=36.99  Aligned_cols=86  Identities=8%  Similarity=-0.065  Sum_probs=46.4

Q ss_pred             CChhhHHHHHHHHHH----cCCCCchH--HHHHHHHHHHhcCCH-------HHHHHHHHHHHhCCccc-----CHHHHHH
Q 000951          890 GNFQGAFKLKDEMEA----LGISSSDV--AESAMVRGLAHCGKV-------EEAMLVLNRMLRMRLVP-----TIATFTT  951 (1211)
Q Consensus       890 g~~~eA~~~~~~~~~----~~~~~~~~--~~~~l~~~~~~~g~~-------~eA~~~~~~~~~~~~~p-----~~~~~~~  951 (1211)
                      -.+++|++.|.-++-    .+.++...  .+-.++++|...|+.       ..|++.|.++.+....|     ...+...
T Consensus        91 Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YL  170 (214)
T PF09986_consen   91 RTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYL  170 (214)
T ss_pred             CCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHH
Confidence            345566666655531    22233322  344557777777773       34555555555443222     2344555


Q ss_pred             HHHHhhhhCCHHHHHHHHHHHHhc
Q 000951          952 LIHKFCKEAKFVDALKLKGTMELS  975 (1211)
Q Consensus       952 L~~~~~~~g~~~~A~~~~~~~~~~  975 (1211)
                      +|...++.|++++|...|..+...
T Consensus       171 igeL~rrlg~~~eA~~~fs~vi~~  194 (214)
T PF09986_consen  171 IGELNRRLGNYDEAKRWFSRVIGS  194 (214)
T ss_pred             HHHHHHHhCCHHHHHHHHHHHHcC
Confidence            666666777777777766665544

>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional

Probab=81.03  E-value=4.8  Score=44.64  Aligned_cols=146  Identities=9%  Similarity=0.128  Sum_probs=83.3

Q ss_pred             HhcCcHHHHHH-HHHHHHHCCCCCChhhHHHHHHHHHhhcchhhHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChhhH
Q 000951          817 CEAGEMGKAFD-LFNIMNMLGVVPDTNTQDAIIMGLKRIAAFQESHFVLRGMAEKGLTPKCTQYITLINGMCRVGNFQGA  895 (1211)
Q Consensus       817 ~~~g~~~~A~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~eA  895 (1211)
                      ...|++-.|.+ ++..+....-.|+.+  ..........|.++.+...+..+-. -+.....+...+.....+.|+|++|
T Consensus       300 ~~~gd~~aas~~~~~~lr~~~~~p~~i--~l~~~i~~~lg~ye~~~~~~s~~~~-~~~s~~~~~~~~~r~~~~l~r~~~a  376 (831)
T PRK15180        300 LADGDIIAASQQLFAALRNQQQDPVLI--QLRSVIFSHLGYYEQAYQDISDVEK-IIGTTDSTLRCRLRSLHGLARWREA  376 (831)
T ss_pred             hhccCHHHHHHHHHHHHHhCCCCchhh--HHHHHHHHHhhhHHHHHHHhhchhh-hhcCCchHHHHHHHhhhchhhHHHH
Confidence            44577766654 444444332233333  3333445667888888877766543 1222345666777777788888888


Q ss_pred             HHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCcccCHHHHHHHHHH--hhhhCC-HHHHHH
Q 000951          896 FKLKDEMEALGISSSDVAESAMVRGLAHCGKVEEAMLVLNRMLRMRLVPTIATFTTLIHK--FCKEAK-FVDALK  967 (1211)
Q Consensus       896 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~p~~~~~~~L~~~--~~~~g~-~~~A~~  967 (1211)
                      +..-+-|+...++. +++....+..-...|.+++|+..+++++..+++ ....|.+....  |...|+ +.||..
T Consensus       377 ~s~a~~~l~~eie~-~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~-~~~g~v~~~~~~~~~~~~~~~~~~~~  449 (831)
T PRK15180        377 LSTAEMMLSNEIED-EEVLTVAAGSADALQLFDKSYHYWKRVLLLNPE-TQSGWVNFLSSTQYFNDGNAFSEAFH  449 (831)
T ss_pred             HHHHHHHhccccCC-hhheeeecccHHHHhHHHHHHHHHHHHhccCCh-hcccceeeeccceeccCcchHHHHHH
Confidence            88888777544333 333332233334567788888888888887765 33444333322  334443 445444

>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK

Probab=80.33  E-value=35  Score=32.23  Aligned_cols=50  Identities=12%  Similarity=0.030  Sum_probs=28.5

Q ss_pred             cCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccCChHHHHHHHHHHHHC
Q 000951          714 MGNMMMANDLLSTMRSRKLCPS-LATYNILLHGYSKKKDLLMCSMLLNTMKME  765 (1211)
Q Consensus       714 ~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  765 (1211)
                      .++.+++..++..+.-  +.|+ ...-..-+..+...|+|.+|+.+|+++.+.
T Consensus        23 ~~d~~D~e~lLdALrv--LrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~   73 (153)
T TIGR02561        23 SADPYDAQAMLDALRV--LRPNLKELDMFDGWLLIARGNYDEAARILRELLSS   73 (153)
T ss_pred             cCCHHHHHHHHHHHHH--hCCCccccchhHHHHHHHcCCHHHHHHHHHhhhcc
Confidence            6666777777766652  3442 222222334456667777777777766653

This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	1211
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	1e-18
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	5e-18
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	5e-15
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	4e-14
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	6e-13
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	3e-12
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	8e-12
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-10
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-06
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	1e-04

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134

 Score = 91.0 bits (224), Expect = 1e-18
 Identities = 26/206 (12%), Positives = 63/206 (30%), Gaps = 4/206 (1%)

Query: 257 RNNRSAKGYLLLKNMRKRMITPNEVTYNTLINGFVKEGKIQVASRVFD---EMSMLNFSP 313
                           +  ++  +          +   ++ +A  +              
Sbjct: 104 GKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLL 163

Query: 314 NSITYNELIDGHCCKGNFKEAFRLLAMMEEMGLRPNEVSYGALLNGFCKHAKFD-LARSL 372
               YN ++ G   +G FKE   +L M+++ GL P+ +SY A L    +  +        
Sbjct: 164 TLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERC 223

Query: 373 LERMRTNGISISCIAYTSVIDGLCKCGLLDEAMQLFNKMFKDGLNPDLITFSVLINGFCK 432
           LE+M   G+ +  +    ++    +  +L    ++          P  +  S L+     
Sbjct: 224 LEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYA 283

Query: 433 VGMTRKAKAVLCKMYRDGLVPNKIIY 458
                    +   +     +  K ++
Sbjct: 284 KDGRVSYPKLHLPLKTLQCLFEKQLH 309

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134

 Score = 89.5 bits (220), Expect = 5e-18
 Identities = 32/210 (15%), Positives = 66/210 (31%), Gaps = 4/210 (1%)

Query: 297 QVASRVFDEMSMLNFSPNSITYNELIDGHCCKGNFKEAFRLLAMMEEMGLRPNEVSYGAL 356
           Q+A  + D       SP       L+     K +            +  L   +    A 
Sbjct: 74  QMAGCLEDCTRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAF 133

Query: 357 LNGFCKHAKFDLARSLLERMR---TNGISISCIAYTSVIDGLCKCGLLDEAMQLFNKMFK 413
                   +  LA  LL            ++   Y +V+ G  + G   E + +   +  
Sbjct: 134 FKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKD 193

Query: 414 DGLNPDLITFSVLINGFCKVGMT-RKAKAVLCKMYRDGLVPNKIIYSTLIYYFCKMGKVT 472
            GL PDL++++  +    +        +  L +M ++GL    +  + L+    +   + 
Sbjct: 194 AGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLK 253

Query: 473 EAMKVYAVMNRNAQGSDHFTCNMLVASLCK 502
              KV    +   Q       + L+  +  
Sbjct: 254 AVHKVKPTFSLPPQLPPPVNTSKLLRDVYA 283

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134

 Score = 79.5 bits (194), Expect = 5e-15
 Identities = 25/229 (10%), Positives = 61/229 (26%), Gaps = 3/229 (1%)

Query: 509 AEDYVGHMKRIGVVPNSITFDCMIDGYGTLGDGLKAFSMFDEMVKLGHHPSIFTYGSLLK 568
           A       ++    P       ++             +   +  +           +  K
Sbjct: 76  AGCLEDCTRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFK 135

Query: 569 GLCKGGNLKEAKRFLNSLHHIP---SAVDTVAYNTILAETCKSGNLWEAIVLLDEMVQFN 625
                  L  A   L   H        +    YN ++    + G   E + +L  +    
Sbjct: 136 CCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAG 195

Query: 626 LLPDRYTYTILLAGLCRKGKVVSALLFFEKVVSKRTFSPNNVMFTCLVDGLFKAGQSKAA 685
           L PD  +Y   L  + R+ +    +    + +S+       +    L+    +A   KA 
Sbjct: 196 LTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAV 255

Query: 686 MHISKIMDKEGVYPDTIAFNAVMDGFSRMGNMMMANDLLSTMRSRKLCP 734
             +          P  +  + ++         +    L   +++ +   
Sbjct: 256 HKVKPTFSLPPQLPPPVNTSKLLRDVYAKDGRVSYPKLHLPLKTLQCLF 304

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134

 Score = 76.4 bits (186), Expect = 4e-14
 Identities = 20/207 (9%), Positives = 66/207 (31%), Gaps = 1/207 (0%)

Query: 116 LREGMVEYALETFQLMGFRGFNPSVYTCNMMLSFMLKDRRVDSVWLLFDDMLDRKICPNV 175
           L   + +            G    +           +      + ++      ++    +
Sbjct: 106 LSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTL 165

Query: 176 ATFNILINVSCVEGKLKKAGYLLRKMEESGYVPNIVTYNTLLNWYCKKGRY-KAAFKLID 234
             +N ++     +G  K+  Y+L  ++++G  P++++Y   L    ++ +      + ++
Sbjct: 166 DMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLE 225

Query: 235 CMASKGIEADVCTYNMFIDDLCRNNRSAKGYLLLKNMRKRMITPNEVTYNTLINGFVKEG 294
            M+ +G++       + + +  R       + +          P  V  + L+     + 
Sbjct: 226 QMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKD 285

Query: 295 KIQVASRVFDEMSMLNFSPNSITYNEL 321
                 ++   +  L        + EL
Sbjct: 286 GRVSYPKLHLPLKTLQCLFEKQLHMEL 312

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134

 Score = 72.9 bits (177), Expect = 6e-13
 Identities = 22/164 (13%), Positives = 54/164 (32%), Gaps = 3/164 (1%)

Query: 888  RVGNFQGAFKLKDEMEALGISSSDVAESAMVRGLAHCGKVEEAMLVLNRMLRMRLVPTIA 947
            R+ + Q A  L+D       S  +   + +++       ++       +  + +L     
Sbjct: 69   RLLSKQMAGCLEDCTRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQ 128

Query: 948  TFTTLIHKFCKEAKFVDA---LKLKGTMELSGVKLDVVSYNVLISGLCANGDVMPAFELY 1004
                         +   A   L +          L +  YN ++ G    G       + 
Sbjct: 129  RLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVL 188

Query: 1005 EEMKHKGLCPNSTTYSVLIDAISKKENNLVKGEILLKDIQERGF 1048
              +K  GL P+  +Y+  +  + +++ +    E  L+ + + G 
Sbjct: 189  FMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGL 232

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134

 Score = 70.2 bits (170), Expect = 3e-12
 Identities = 25/216 (11%), Positives = 58/216 (26%), Gaps = 4/216 (1%)

Query: 402 DEAMQLFNKMFKDGLNPDLITFSVLINGFCKVGMTRKAKAVLCKMYRDGLVPNKIIYSTL 461
             A  L +   +   +P     + L+            +A   +  +  L   +      
Sbjct: 74  QMAGCLEDCTRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAF 133

Query: 462 IYYFCKMGKVTEAMKVYAVMNRNAQGSDHF---TCNMLVASLCKGGKVCEAEDYVGHMKR 518
                   ++  A  +  V +   Q          N ++    + G   E    +  +K 
Sbjct: 134 FKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKD 193

Query: 519 IGVVPNSITFDCMIDGYGTLGDGLKAFS-MFDEMVKLGHHPSIFTYGSLLKGLCKGGNLK 577
            G+ P+ +++   +   G             ++M + G          LL    +   LK
Sbjct: 194 AGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLK 253

Query: 578 EAKRFLNSLHHIPSAVDTVAYNTILAETCKSGNLWE 613
              +   +    P     V  + +L +         
Sbjct: 254 AVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKDGRVS 289

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134

 Score = 69.1 bits (167), Expect = 8e-12
 Identities = 55/459 (11%), Positives = 126/459 (27%), Gaps = 50/459 (10%)

Query: 654  EKVVSKRTFSPNNVMFTCLVDGLFKAGQSKAAMHISKIMDKEGVYPDTIAFNAVMDGFSR 713
            E    +   SP       L+               S    +  +        A       
Sbjct: 80   EDCTRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLL 139

Query: 714  MGNMMMANDLLSTMRSRK---LCPSLATYNILLHGYSKKKDLLMCSMLLNTMKMEGLLPD 770
               + +A+ LL     ++      +L  YN ++ G++++        +L  +K  GL PD
Sbjct: 140  TDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPD 199

Query: 771  KLTCHSLILGFCETGM-LEVGFKFLKKMIAEGTMVDCFTFNVLMRKCCEAGEMGKAFDLF 829
             L+  + +              + L++M  EG  +      VL+ +   A  +     + 
Sbjct: 200  LLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVK 259

Query: 830  NIMNMLGVVPDTNTQDAIIMGLKRIAAFQESHFVLRGMAEKGLTPKCTQYITLINGMCRV 889
               ++   +P                    +  +LR +  K       +    +  +  +
Sbjct: 260  PTFSLPPQLPPP----------------VNTSKLLRDVYAKDGRVSYPKLHLPLKTLQCL 303

Query: 890  GNFQGAFKLKDEMEALGISSSDVAESAMVRGLAHCGKVEEAMLVLNRMLRMRLVPTIATF 949
               Q    L  E+ +     S    +   + + H  K  + +          L   +   
Sbjct: 304  FEKQ----LHMELASRVCVVSVEKPTLPSKEVKHARKTLKTLR---DQWEKALCRALRET 356

Query: 950  TTLIHKFCKEAKFVDALKLKGTMELSGVKLDVVSYNVLISGLCANGD------------V 997
               + +   E +F     L     L   ++  +   VL + L A G+             
Sbjct: 357  KNRLEREVYEGRFSLYPFLC---LLDEREVVRMLLQVLQA-LPAQGESFTTLARELSART 412

Query: 998  MPAFELYEEMKHKGLCPNSTTYS---VLIDAISKKENNLVKGEILLKDIQERGFISWNWD 1054
                 +  +     +      Y     L+ + ++     +  +               W 
Sbjct: 413  FSRHVVQRQRVSGQVQALQNHYRKYLCLLASDAEVPEPCLPRQYWEALGAPEALREQPWP 472

Query: 1055 GSTQ-HLHEGLINALR---KLKSFKKNRRNNAKIDPTFM 1089
               Q  L + L   L    ++         ++++ P   
Sbjct: 473  LPVQMELGKLLAEMLVQATQMPCSLDKPHRSSRLVPVLY 511

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 63.3 bits (153), Expect = 4e-10
 Identities = 89/647 (13%), Positives = 189/647 (29%), Gaps = 211/647 (32%)

Query: 618  LDEMVQFNLLPDRYTYTILLAG-LCRKGK-VVSALLFFEKVVSK-------------RTF 662
            +D ++      D  + T+ L   L  K + +V    F E+V+               R  
Sbjct: 51   IDHIIM---SKDAVSGTLRLFWTLLSKQEEMVQK--FVEEVLRINYKFLMSPIKTEQRQP 105

Query: 663  SPNNVMFTCLVDGLFKAGQSKAAMHISKIMD----KEGVYPDTIAFNAVMDGFSRMGNMM 718
            S    M+    D L+   Q  A  ++S++      ++ +     A N ++DG    G   
Sbjct: 106  SMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTW 165

Query: 719  MANDLLSTMRSRKLCPSLATYNI--LLHGYSKKKDLLMCSMLLNTMKMEGLLPDKLTCHS 776
            +A D+  + + +        + I  L        + ++  ML                + 
Sbjct: 166  VALDVCLSYKVQCKMD----FKIFWLNLKNCNSPETVL-EMLQKL------------LYQ 208

Query: 777  LILGFCETG--------MLEVGFKFLKKMIAEGTMVDCFTFNVLMRKCCEAGEMGKAFDL 828
            +   +             +      L++++      +C    +++     A    KA++ 
Sbjct: 209  IDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCL---LVLLNVQNA----KAWNA 261

Query: 829  FNIM-NMLGVVPDTNTQDAIIMGLKRIAAFQESHFVLRGMAEKGLTPKCTQYITLINGMC 887
            FN+   +L +     T+   +     ++A   +H  L       LTP             
Sbjct: 262  FNLSCKIL-LT----TRFKQVT--DFLSAATTTHISL-DHHSMTLTP------------- 300

Query: 888  RVGNFQGAFKLKDEMEAL-----GISSSDVAESAMVRGLAHCGKVEEAMLVLNRMLRMRL 942
                        DE+++L          D+              +      L+ ++   +
Sbjct: 301  ------------DEVKSLLLKYLDCRPQDLPREV----------LTTNPRRLS-IIAESI 337

Query: 943  VPTIATFTTLIHKFCKEAKFVDALKLKGTMELSGVKLD------------VVSYNVLISG 990
               +AT+    H  C         KL   +E S   L+            V   +  I  
Sbjct: 338  RDGLATWDNWKHVNCD--------KLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPT 389

Query: 991  --LC---ANGDVMPAFELYEEMKHKGLC---PNSTTYSV--LIDAISKKENNLVKGEILL 1040
              L     +        +  ++    L    P  +T S+  +   +  K  N        
Sbjct: 390  ILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENE------- 442

Query: 1041 KDIQERGFISWNWDGSTQHLHEGLINALRKLKSFKKNRRNNAKIDPTFMEALPEDLLAEV 1100
                               LH  +++     K+F     ++  I P        D     
Sbjct: 443  -----------------YALHRSIVDHYNIPKTFD----SDDLIPP------YLD----- 470

Query: 1101 LASQQASSIAQGLAHHGEGQPVDMDNASVIATFPA---DL--CEEKL-------FCPCCL 1148
                        + HH +     +++   +  F     D    E+K+            +
Sbjct: 471  ------QYFYSHIGHHLKN----IEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSI 520

Query: 1149 LHYLLKL-IYQG-------SKQRVIIGPAVSLEEVMKKVEEQTVMDK 1187
            L+ L +L  Y+          +R++     ++ + + K+EE  +  K
Sbjct: 521  LNTLQQLKFYKPYICDNDPKYERLVN----AILDFLPKIEENLICSK 563

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 50.2 bits (119), Expect = 4e-06
 Identities = 76/547 (13%), Positives = 138/547 (25%), Gaps = 211/547 (38%)

Query: 4   SIYTLLTIDRWESLNHMEYKLASLRP-----VHGR-------LALKFLN----------- 40
            ++    + R +    +   L  LRP     + G        +AL               
Sbjct: 124 QVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFK 183

Query: 41  --WV----MNQPGLELKHLTHILC------------------LTTHV-------LVKTRM 69
             W+     N P   L+ L   L                   L  H        L+K++ 
Sbjct: 184 IFWLNLKNCNSPETVLEMLQK-LLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKP 242

Query: 70  YEDAKLILRQLAQMGIGQNS----VFG----SLMNTYPLCNSNPSVFDLLIRVYLREGMV 121
           YE+  L+L  +      QN+     F      L+ T         V D L         +
Sbjct: 243 YENCLLVLLNV------QNAKAWNAFNLSCKILLTT-----RFKQVTDFLSAATTTHISL 291

Query: 122 EYALETFQLMGFRGFNPSVYTCNMMLSFMLKDRRVDSVWLLFD-DMLDRKIC---PNVAT 177
           ++   T              T + + S +LK       +L      L R++    P    
Sbjct: 292 DHHSMTL-------------TPDEVKSLLLK-------YLDCRPQDLPREVLTTNP---- 327

Query: 178 FNILINVSCVEGKLKKAGYLLRKMEESGYVPNIVTYNTLLNWYCKKGRYKAAFKLIDCMA 237
               +++             +R               T  NW  K         +I+   
Sbjct: 328 --RRLSI---------IAESIRDGL-----------ATWDNW--KHVNCDKLTTIIE--- 360

Query: 238 SKGIEADVCTYNMFIDDLCRNNRSAKGYLLLKNMRKRMITPNEV--TYNTL-INGFVKEG 294
                         ++ L                      P E    ++ L +  F    
Sbjct: 361 ------------SSLNVL---------------------EPAEYRKMFDRLSV--FPPSA 385

Query: 295 KI--QVASRVFDEMSMLNFSPNSITYNELIDGHCCKGNFKE-AFRLLAM-MEEMGLRPNE 350
            I   + S ++ ++         +  N+L      +   KE    + ++ +E      NE
Sbjct: 386 HIPTILLSLIWFDVI--KSDVMVVV-NKLHKYSLVEKQPKESTISIPSIYLELKVKLENE 442

Query: 351 VSYGALLNGFCKHAKFDLARSLLERMRTNGISISC--------IAYTSVIDGLCKCGLLD 402
            +          H       ++ +   ++ +            I +      L       
Sbjct: 443 YA---------LHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHH-----LKNIE-HP 487

Query: 403 EAMQLFNKMFKDGLNPDLITFSVLINGFCKVGMTRKAKAVLC------KMYRDGLVPNKI 456
           E M LF  +F D        F  L            A   +       K Y+  +  N  
Sbjct: 488 ERMTLFRMVFLD--------FRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDP 539

Query: 457 IYSTLIY 463
            Y  L+ 
Sbjct: 540 KYERLVN 546

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 45.1 bits (107), Expect = 1e-04
 Identities = 48/394 (12%), Positives = 101/394 (25%), Gaps = 42/394 (10%)

Query: 309 LNFSPNSI-TYNELIDGHCCKGNFKEAFRLLAMMEEMGLRPNEV-SYGALLNGFCKHAKF 366
           LN +P  +        G       +    +L   +  GL P +V +  +   G       
Sbjct: 65  LNLTPEQVVAIASHDGGKQALETVQRLLPVLC--QAHGLTPQQVVAIASHDGGKQALETV 122

Query: 367 DLARSLLERMRTNGISIS---CIAYTSVIDGLCKCGLLDEAMQLFNKMFKDGLNPDLI-T 422
                +L +       ++    +A  S   G      +   + +  +    GL P+ +  
Sbjct: 123 QRLLPVLCQ----AHGLTPEQVVAIASHDGGKQALETVQALLPVLCQAH--GLTPEQVVA 176

Query: 423 FSVLINGFCKVGMTRKAKAVLCKMYRDGLVPNKI-IYSTLIYYFCKMGKVTEAMKVYAVM 481
            +    G   +   ++   VLC+ +   L P ++   ++       +  V   + V    
Sbjct: 177 IASNGGGKQALETVQRLLPVLCQAHG--LTPQQVVAIASNGGGKQALETVQRLLPVL--- 231

Query: 482 NRNA---QGSDHFTCNMLVASLCKGGKVCEA-EDYVGHMKRIGVVPNSI-TFDCMIDGYG 536
              A                       V           +  G+ P  +        G  
Sbjct: 232 -CQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLC---QAHGLTPQQVVAIASNSGGKQ 287

Query: 537 TLGDGLKAFSMFDEMVKLGHHP-SIFTYGSLLKGLCKGGNLKEAKRFLNSLHHI-PSAVD 594
            L    +   +  +   L   P  +    S   G      ++     L   H + P    
Sbjct: 288 ALETVQRLLPVLCQAHGL--TPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQ--Q 343

Query: 595 TVAYNTILAETCKSGNLWEAIVLLDEMVQFNLLPDRY-TYTILLAGLCRKGKVVSALLFF 653
            VA  +          +   + +L +       P++         G      V   L   
Sbjct: 344 VVAIASHDGGKQALETVQRLLPVLCQAHGLT--PEQVVAIASNGGGKQALETVQRLLPVL 401

Query: 654 EKVVSKRTFSPNNVM-FTCLVDGLFKAGQSKAAM 686
            +       +P  V+       G       +  +
Sbjct: 402 CQAHG---LTPEQVVAIASHDGGKQALETVQRLL 432

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	1211
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	100.0
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	100.0
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	99.97
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	99.97
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	99.96
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	99.96
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	99.96
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	99.96
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.93
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.93
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.92
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.91
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.91
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.91
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.87
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.87
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	99.87
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	99.86
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.84
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.83
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	99.82
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	99.81
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.81
4g1t_A	472	Interferon-induced protein with tetratricopeptide	99.8
4g1t_A	472	Interferon-induced protein with tetratricopeptide	99.8
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.8
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.79
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.77
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	99.76
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.76
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.75
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.74
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	99.73
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.72
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	99.71
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	99.7
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.7
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.69
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.69
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.69
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.68
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	99.68
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.67
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.65
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	99.64
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	99.64
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.63
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	99.62
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	99.59
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.59
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	99.58
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.58
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	99.57
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.57
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.56
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.56
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.55
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.54
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	99.54
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.54
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	99.53
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.53
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.52
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	99.52
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.51
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	99.5
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.49
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	99.48
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	99.48
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.46
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	99.46
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.44
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	99.44
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	99.41
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.41
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.41
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	99.4
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	99.37
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.36
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.36
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	99.33
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	99.3
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	99.28
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.28
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	99.28
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.26
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	99.24
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.23
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	99.22
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.19
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	99.18
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.17
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.17
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	99.17
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	99.15
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.15
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.14
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	99.11
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	99.09
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	99.08
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	99.06
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	99.04
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	99.04
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	99.04
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	99.04
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	99.04
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	99.03
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	99.01
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.01
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	99.0
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	99.0
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	98.99
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	98.99
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	98.96
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	98.96
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	98.95
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	98.95
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	98.92
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	98.91
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	98.87
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	98.86
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	98.81
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	98.79
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	98.79
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	98.77
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	98.77
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	98.77
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	98.76
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	98.75
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	98.75
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	98.75
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	98.74
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	98.73
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	98.72
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	98.72
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	98.72
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	98.71
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	98.71
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	98.71
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	98.69
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	98.69
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	98.69
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	98.67
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	98.66
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	98.66
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	98.64
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	98.62
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	98.62
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	98.62
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	98.61
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	98.61
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	98.61
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	98.6
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	98.59
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	98.59
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	98.58
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	98.58
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	98.57
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	98.52
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	98.52
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	98.51
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	98.5
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	98.49
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	98.48
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	98.48
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	98.48
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	98.46
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	98.44
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	98.43
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	98.42
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	98.41
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	98.4
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	98.39
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	98.39
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	98.38
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	98.37
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	98.34
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	98.33
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	98.33
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	98.32
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	98.32
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	98.32
3k9i_A	117	BH0479 protein; putative protein binding protein,	98.32
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	98.31
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	98.29
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	98.29
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	98.28
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	98.27
3k9i_A	117	BH0479 protein; putative protein binding protein,	98.27
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	98.23
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	98.22
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	98.22
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	98.19
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	98.18
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	98.15
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	98.03
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	98.02
2l6j_A	111	TPR repeat-containing protein associated with HSP;	97.93
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	97.93
1klx_A	138	Cysteine rich protein B; structural genomics, heli	97.92
2kat_A	115	Uncharacterized protein; NESG, structure, structur	97.9
2l6j_A	111	TPR repeat-containing protein associated with HSP;	97.9
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	97.84
2kat_A	115	Uncharacterized protein; NESG, structure, structur	97.84
1klx_A	138	Cysteine rich protein B; structural genomics, heli	97.8
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	97.78
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	97.6
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	97.57
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	97.3
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	97.22
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	97.22
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	97.15
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	97.11
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	97.08
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	97.05
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	97.04
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	96.99
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	96.97
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	96.85
1pc2_A	152	Mitochondria fission protein; unknown function; NM	96.64
1pc2_A	152	Mitochondria fission protein; unknown function; NM	96.49
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	96.34
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	96.34
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	96.23
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	96.16
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	95.92
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	95.38
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	95.31
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	94.81
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	94.07
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	94.04
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	94.04
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	93.76
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	93.34
3lpz_A	336	GET4 (YOR164C homolog); protein targeting, tail-an	92.51
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	91.64
3lvg_A	624	Clathrin heavy chain 1; SELF assembly, coated PIT,	91.6
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	91.44
4b4t_P	445	26S proteasome regulatory subunit RPN5; hydrolase,	91.39
4b4t_P	445	26S proteasome regulatory subunit RPN5; hydrolase,	91.38
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	90.76
3lvg_A	624	Clathrin heavy chain 1; SELF assembly, coated PIT,	90.3
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	90.07
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	90.01
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	89.49
1wy6_A	172	Hypothetical protein ST1625; helical repeat protei	89.31
2wpv_A	312	GET4, UPF0363 protein YOR164C; golgi-ER traffickin	88.21
3txn_A	394	26S proteasome regulatory complex subunit P42B; PC	87.7
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	87.34
1wy6_A	172	Hypothetical protein ST1625; helical repeat protei	86.26
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	85.77
3lpz_A	336	GET4 (YOR164C homolog); protein targeting, tail-an	85.71
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	84.24
3txn_A	394	26S proteasome regulatory complex subunit P42B; PC	82.77
2wpv_A	312	GET4, UPF0363 protein YOR164C; golgi-ER traffickin	82.35
4fhn_B	1139	Nucleoporin NUP120; protein complex,structural pro	82.26
4fhn_B	1139	Nucleoporin NUP120; protein complex,structural pro	80.4
1zbp_A	273	Hypothetical protein VPA1032; alpha-beta protein,	80.07

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=100.00  E-value=2.2e-37  Score=382.59  Aligned_cols=485  Identities=11%  Similarity=-0.017  Sum_probs=357.0

Q ss_pred             CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHH
Q 000951          523 PNSITFDCMIDGYGTLGDGLKAFSMFDEMVKLGHHPSIFTYGSLLKGLCKGGNLKEAKRFLNSLHHIPSAVDTVAYNTIL  602 (1211)
Q Consensus       523 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li  602 (1211)
                      ++...|+.++..|.+.|++++|+.+|++|..  ..|+..++..++.+|.+.|++++|..+++.+...  .++..+++.++
T Consensus        82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~  157 (597)
T 2xpi_A           82 SREDYLRLWRHDALMQQQYKCAAFVGEKVLD--ITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY--NRSSACRYLAA  157 (597)
T ss_dssp             CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG--GTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHccCchHHHHHHHHHHh--hCCCchHHHHHHHHHHHcCcHHHHHHHHHHHhcc--ccchhHHHHHH
Confidence            4555666666666666666666666666653  2355556666666666666666666666655432  23555666666


Q ss_pred             HHHHHcCCHHHHHHHHHHHHhC---------------CCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCCHH
Q 000951          603 AETCKSGNLWEAIVLLDEMVQF---------------NLLPDRYTYTILLAGLCRKGKVVSALLFFEKVVSKRTFSPNNV  667 (1211)
Q Consensus       603 ~~~~~~g~~~~A~~~~~~m~~~---------------~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~  667 (1211)
                      .+|.+.|++++|+++|+++...               +.+++..+|+.++.+|.+.|++++|+..|+++++.+  +.+..
T Consensus       158 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--p~~~~  235 (597)
T 2xpi_A          158 FCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVD--AKCYE  235 (597)
T ss_dssp             HHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHH
T ss_pred             HHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--chhhH
Confidence            6666666666666666632211               223357788888888888888888888888888754  23345


Q ss_pred             HHHHHHHHHHHcCCHHHHH--HH-HHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 000951          668 MFTCLVDGLFKAGQSKAAM--HI-SKIMDKEGVYPDTIAFNAVMDGFSRMGNMMMANDLLSTMRSRKLCPSLATYNILLH  744 (1211)
Q Consensus       668 ~~~~l~~~~~~~g~~~~A~--~~-~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~  744 (1211)
                      .+..+...+...+..+.+.  .+ +..+...+..+...+|+.++..|.+.|++++|..+|+++.+.  +++..+|+.++.
T Consensus       236 ~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~  313 (597)
T 2xpi_A          236 AFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKAD  313 (597)
T ss_dssp             HHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHH
T ss_pred             HHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC--CchHHHHHHHHH
Confidence            5555554443332222211  11 344444333344456666778888889999999999888753  468889999999


Q ss_pred             HHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCcHHH
Q 000951          745 GYSKKKDLLMCSMLLNTMKMEGLLPDKLTCHSLILGFCETGMLEVGFKFLKKMIAEGTMVDCFTFNVLMRKCCEAGEMGK  824 (1211)
Q Consensus       745 ~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~  824 (1211)
                      +|.+.|++++|+++|+++.+.+. .+..++..++.+|.+.|++++|.++++++.+. .+.+..+++.++.+|.+.|++++
T Consensus       314 ~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~  391 (597)
T 2xpi_A          314 TLFVRSRFIDVLAITTKILEIDP-YNLDVYPLHLASLHESGEKNKLYLISNDLVDR-HPEKAVTWLAVGIYYLCVNKISE  391 (597)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCT-TCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHH-CTTSHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHhcCHHHHHHHHHHHHHcCc-ccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhh-CcccHHHHHHHHHHHHHhccHHH
Confidence            99999999999999999887532 25667888888899999999999999998865 34467788888999999999999


Q ss_pred             HHHHHHHHHHCCCCCChhhHHHHHHHHHhhcchhhHHHHHHHHHHcCCCC-ChhHHHHHHHHHHhcCChhhHHHHHHHHH
Q 000951          825 AFDLFNIMNMLGVVPDTNTQDAIIMGLKRIAAFQESHFVLRGMAEKGLTP-KCTQYITLINGMCRVGNFQGAFKLKDEME  903 (1211)
Q Consensus       825 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~eA~~~~~~~~  903 (1211)
                      |+++|+++.+.. +.+..+|+.++.+|.+.|++++|+.+|+++++  ..| +..++..++.+|.+.|++++|.++|+++.
T Consensus       392 A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~  468 (597)
T 2xpi_A          392 ARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAAR--LFQGTHLPYLFLGMQHMQLGNILLANEYLQSSY  468 (597)
T ss_dssp             HHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--TTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCccchHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            999999887643 34577899999999999999999999999988  566 45788889999999999999999999998


Q ss_pred             HcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CcccC--HHHHHHHHHHhhhhCCHHHHHHHHHHHHhcCC
Q 000951          904 ALGISSSDVAESAMVRGLAHCGKVEEAMLVLNRMLRM----RLVPT--IATFTTLIHKFCKEAKFVDALKLKGTMELSGV  977 (1211)
Q Consensus       904 ~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~----~~~p~--~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~  977 (1211)
                      +.. +.+..+|..++.+|.+.|++++|+++|+++++.    +..|+  ..+|..++.+|.+.|++++|+..|+.+...  
T Consensus       469 ~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--  545 (597)
T 2xpi_A          469 ALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLL--  545 (597)
T ss_dssp             HHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--
T ss_pred             HhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--
Confidence            763 567888899999999999999999999998886    44565  678999999999999999999998887766  


Q ss_pred             CC-chHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCccCh-hhHHHHHHH
Q 000951          978 KL-DVVSYNVLISGLCANGDVMPAFELYEEMKHKGLCPNS-TTYSVLIDA 1025 (1211)
Q Consensus       978 ~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~p~~-~~~~~l~~~ 1025 (1211)
                      .| +..+|..++.+|...|+|++|.+.++++.+  +.|+. ..+..+.+.
T Consensus       546 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~--~~p~~~~~~~~l~~~  593 (597)
T 2xpi_A          546 STNDANVHTAIALVYLHKKIPGLAITHLHESLA--ISPNEIMASDLLKRA  593 (597)
T ss_dssp             SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHT
T ss_pred             CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHh--cCCCChHHHHHHHHH
Confidence            56 455888899999999999999999998876  46655 566555443

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=100.00  E-value=4e-37  Score=380.36  Aligned_cols=503  Identities=11%  Similarity=-0.011  Sum_probs=271.0

Q ss_pred             hCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHHcCChHHHHH
Q 000951          152 KDRRVDSVWLLFDDMLDRKICPNVATFNILINVSCVEGKLKKAGYLLRKMEESGYVPNIVTYNTLLNWYCKKGRYKAAFK  231 (1211)
Q Consensus       152 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~  231 (1211)
                      +.+.+..+...+..+.    .+++..|+.++..+.+.|++++|..+|++|...  .|+..++..++..|.+.|++++|..
T Consensus        65 ~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~  138 (597)
T 2xpi_A           65 TDGSFLKERNAQNTDS----LSREDYLRLWRHDALMQQQYKCAAFVGEKVLDI--TGNPNDAFWLAQVYCCTGDYARAKC  138 (597)
T ss_dssp             ---------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             ccCccCCCCCccccch----HHHHHHHHHHHHHHHHccCchHHHHHHHHHHhh--CCCchHHHHHHHHHHHcCcHHHHHH
Confidence            3444444444444332    245556666666666666666666666666532  4555566666666666666666666


Q ss_pred             HHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC
Q 000951          232 LIDCMASKGIEADVCTYNMFIDDLCRNNRSAKGYLLLKNMRKRMITPNEVTYNTLINGFVKEGKIQVASRVFDEMSMLNF  311 (1211)
Q Consensus       232 ~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~  311 (1211)
                      +|+++...  +++..+++.++.+|.+.|++++|..+|+++....    ..     ..++.+.+           -...+.
T Consensus       139 ~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~~-----~~~~~~~~-----------~~~~~~  196 (597)
T 2xpi_A          139 LLTKEDLY--NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFR----KD-----EKNANKLL-----------MQDGGI  196 (597)
T ss_dssp             HHHHTCGG--GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC------------------------------CCCSSC
T ss_pred             HHHHHhcc--ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCcc----cc-----cccccccc-----------cccccc
Confidence            66655422  3455555555555555555555555554311100    00     00000000           001133


Q ss_pred             CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHhHHHHHHHHHHhcCChHH--HHHH-HHHHHHCCCCcCHHHH
Q 000951          312 SPNSITYNELIDGHCCKGNFKEAFRLLAMMEEMGLRPNEVSYGALLNGFCKHAKFDL--ARSL-LERMRTNGISISCIAY  388 (1211)
Q Consensus       312 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~--a~~l-~~~~~~~~~~~~~~~~  388 (1211)
                      +++..+|+.++.+|.+.|++++|+++|++|.+.+ +.+...+..+...+...+..+.  +..+ +..+...+..+...+|
T Consensus       197 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  275 (597)
T 2xpi_A          197 KLEASMCYLRGQVYTNLSNFDRAKECYKEALMVD-AKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLY  275 (597)
T ss_dssp             CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-chhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHH
Confidence            4456777777777777777777777777777643 1223334444333322211111  1111 3444444444445566


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 000951          389 TSVIDGLCKCGLLDEAMQLFNKMFKDGLNPDLITFSVLINGFCKVGMTRKAKAVLCKMYRDGLVPNKIIYSTLIYYFCKM  468 (1211)
Q Consensus       389 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~  468 (1211)
                      +.++..|.+.|++++|.++|+++.+.  +++..+|+.++.+|.+.|++++|..+|+++.+.+ +.+..++..++.++.+.
T Consensus       276 ~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~  352 (597)
T 2xpi_A          276 MLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHES  352 (597)
T ss_dssp             HTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHH
T ss_pred             HHHHHHHcCcchHHHHHHHHHHhhcC--CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHh
Confidence            66777777777888888888777654  4677777778888888888888888887777654 34566677777777777


Q ss_pred             CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 000951          469 GKVTEAMKVYAVMNRNAQGSDHFTCNMLVASLCKGGKVCEAEDYVGHMKRIGVVPNSITFDCMIDGYGTLGDGLKAFSMF  548 (1211)
Q Consensus       469 g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~  548 (1211)
                      |++++|..+++.+.+..+. +..+++.++.+|.+.|++++|.++|+++.+.. +.+..+|+.++.+|.+.|++++|+++|
T Consensus       353 g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~  430 (597)
T 2xpi_A          353 GEKNKLYLISNDLVDRHPE-KAVTWLAVGIYYLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAY  430 (597)
T ss_dssp             TCHHHHHHHHHHHHHHCTT-SHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            7777777777777755433 66677777777777777777777777776543 235667777777777777777777777


Q ss_pred             HHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC----
Q 000951          549 DEMVKLGHHPSIFTYGSLLKGLCKGGNLKEAKRFLNSLHHIPSAVDTVAYNTILAETCKSGNLWEAIVLLDEMVQF----  624 (1211)
Q Consensus       549 ~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----  624 (1211)
                      +++.+.+ +.+..++..++.+|.+.|++++|.+.|+.+.+..+. +..+|+.++..|.+.|++++|+++|+++.+.    
T Consensus       431 ~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~  508 (597)
T 2xpi_A          431 TTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQY-DPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKT  508 (597)
T ss_dssp             HHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhcc
Confidence            7776643 234445555555555555555555555554443332 3444445555555555555555555544443    


Q ss_pred             CCCCC--HHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 000951          625 NLLPD--RYTYTILLAGLCRKGKVVSALLFFEKVVSKRTFSPNNVMFTCLVDGLFKAGQSKAAMHISKIM  692 (1211)
Q Consensus       625 ~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~  692 (1211)
                      +..|+  ..+|..++.+|.+.|++++|...|+++++.+  +.+..+|..++.+|.+.|++++|.+.++++
T Consensus       509 ~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~  576 (597)
T 2xpi_A          509 QSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS--TNDANVHTAIALVYLHKKIPGLAITHLHES  576 (597)
T ss_dssp             CCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--SCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             ccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence            22333  3344444444444444444444444444332  223333444444444444444444444443

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=99.97  E-value=3.6e-27  Score=273.51  Aligned_cols=379  Identities=12%  Similarity=0.014  Sum_probs=274.2

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcC
Q 000951          601 ILAETCKSGNLWEAIVLLDEMVQFNLLPDRYTYTILLAGLCRKGKVVSALLFFEKVVSKRTFSPNNVMFTCLVDGLFKAG  680 (1211)
Q Consensus       601 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g  680 (1211)
                      +...+.+.|++++|++.+.++.+.. +.+...+..+...+...|++++|..+++.+++..  +.+..+|..++..+.+.|
T Consensus         5 ~a~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~--p~~~~~~~~lg~~~~~~g   81 (388)
T 1w3b_A            5 LAHREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN--PLLAEAYSNLGNVYKERG   81 (388)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHHCC
Confidence            3455667788888888888777653 2345556666667777888888888888877753  455677888888888888


Q ss_pred             CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCChHHHHHHH
Q 000951          681 QSKAAMHISKIMDKEGVYPDTIAFNAVMDGFSRMGNMMMANDLLSTMRSRKLCP-SLATYNILLHGYSKKKDLLMCSMLL  759 (1211)
Q Consensus       681 ~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~  759 (1211)
                      ++++|+..|+++++.. +.+...+..++.++.+.|++++|...|+++.+.  .| +...+..++..+...|++++|++.|
T Consensus        82 ~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~  158 (388)
T 1w3b_A           82 QLQEAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQY--NPDLYCVRSDLGNLLKALGRLEEAKACY  158 (388)
T ss_dssp             CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHH--CTTCTHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHccCHHHHHHHH
Confidence            8888888888876642 334556777777788888888888888877753  45 4666777777777788888888888


Q ss_pred             HHHHHCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHHHHHCCCC
Q 000951          760 NTMKMEGLLP-DKLTCHSLILGFCETGMLEVGFKFLKKMIAEGTMVDCFTFNVLMRKCCEAGEMGKAFDLFNIMNMLGVV  838 (1211)
Q Consensus       760 ~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~  838 (1211)
                      +++++.  .| +..+|..++..+...|++++|+..|+++++.+ +.+...+..++.++...|++++|++.|+++.+.. +
T Consensus       159 ~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p  234 (388)
T 1w3b_A          159 LKAIET--QPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-P  234 (388)
T ss_dssp             HHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-T
T ss_pred             HHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-c
Confidence            887773  45 45667777777778888888888888877742 2235667777777888888888888887776643 2


Q ss_pred             CChhhHHHHHHHHHhhcchhhHHHHHHHHHHcCCCCC-hhHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCchHHHHHH
Q 000951          839 PDTNTQDAIIMGLKRIAAFQESHFVLRGMAEKGLTPK-CTQYITLINGMCRVGNFQGAFKLKDEMEALGISSSDVAESAM  917 (1211)
Q Consensus       839 ~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~l  917 (1211)
                      .+..+|..++.+|...|++++|+..|+++++  ..|+ ..++..++.++...|++++|.+.|+++++. .+.+..++..+
T Consensus       235 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~l  311 (388)
T 1w3b_A          235 NHAVVHGNLACVYYEQGLIDLAIDTYRRAIE--LQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRL-CPTHADSLNNL  311 (388)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH-CTTCHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-CcccHHHHHHH
Confidence            2466777777778888888888888888777  6665 467777777777888888888888877766 35667777777


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhCCcccCHHHHHHHHHHhhhhCCHHHHHHHHHHHHhcCCCCchH-HHHHHHHHHHhCC
Q 000951          918 VRGLAHCGKVEEAMLVLNRMLRMRLVPTIATFTTLIHKFCKEAKFVDALKLKGTMELSGVKLDVV-SYNVLISGLCANG  995 (1211)
Q Consensus       918 ~~~~~~~g~~~eA~~~~~~~~~~~~~p~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g  995 (1211)
                      +.++...|++++|++.|+++++..|. +..++..++.+|.+.|++++|+..|+.+...  .|+.. .|+.++.++...|
T Consensus       312 ~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~--~p~~~~a~~~lg~~~~~~~  387 (388)
T 1w3b_A          312 ANIKREQGNIEEAVRLYRKALEVFPE-FAAAHSNLASVLQQQGKLQEALMHYKEAIRI--SPTFADAYSNMGNTLKEMQ  387 (388)
T ss_dssp             HHHHHTTTCHHHHHHHHHHHTTSCTT-CHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHTC
T ss_pred             HHHHHHcCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHhHHHHHHHcc
Confidence            77777788888888888887776544 6777777888888888888888777766544  67543 6777777666554

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=99.97  E-value=4e-27  Score=273.11  Aligned_cols=378  Identities=16%  Similarity=0.075  Sum_probs=331.3

Q ss_pred             HHHHHHhCCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 000951          636 LLAGLCRKGKVVSALLFFEKVVSKRTFSPNNVMFTCLVDGLFKAGQSKAAMHISKIMDKEGVYPDTIAFNAVMDGFSRMG  715 (1211)
Q Consensus       636 li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g  715 (1211)
                      +...+.+.|++++|+..+.++.+..  +.+...+..+...+...|++++|...++.+++.. +.+...|..+...|.+.|
T Consensus         5 ~a~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g   81 (388)
T 1w3b_A            5 LAHREYQAGDFEAAERHCMQLWRQE--PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERG   81 (388)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCC
Confidence            3456778999999999999999864  4456778888899999999999999999987753 567889999999999999


Q ss_pred             ChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCChHHHHHH
Q 000951          716 NMMMANDLLSTMRSRKLCP-SLATYNILLHGYSKKKDLLMCSMLLNTMKMEGLLPDK-LTCHSLILGFCETGMLEVGFKF  793 (1211)
Q Consensus       716 ~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~  793 (1211)
                      ++++|...|+++.+.  .| +..+|..++.++.+.|++++|++.|+++++  ..|+. ..+..+...+...|++++|++.
T Consensus        82 ~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~  157 (388)
T 1w3b_A           82 QLQEAIEHYRHALRL--KPDFIDGYINLAAALVAAGDMEGAVQAYVSALQ--YNPDLYCVRSDLGNLLKALGRLEEAKAC  157 (388)
T ss_dssp             CHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHH--HCTTCTHHHHHHHHHHHTTSCHHHHHHH
T ss_pred             CHHHHHHHHHHHHHc--CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHccCHHHHHHH
Confidence            999999999999864  56 677899999999999999999999999998  45754 4566788899999999999999


Q ss_pred             HHHHHHcCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhcchhhHHHHHHHHHHcCCC
Q 000951          794 LKKMIAEGTMVDCFTFNVLMRKCCEAGEMGKAFDLFNIMNMLGVVPDTNTQDAIIMGLKRIAAFQESHFVLRGMAEKGLT  873 (1211)
Q Consensus       794 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~g~~  873 (1211)
                      |+++++.. +.+..++..++.+|...|++++|++.|+++++.+ +.+...|..++..+...|++++|+..|+++++  ..
T Consensus       158 ~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~--~~  233 (388)
T 1w3b_A          158 YLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALS--LS  233 (388)
T ss_dssp             HHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHH--HC
T ss_pred             HHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hC
Confidence            99999853 3357789999999999999999999999998854 33578899999999999999999999999998  77


Q ss_pred             CC-hhHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCcccCHHHHHHH
Q 000951          874 PK-CTQYITLINGMCRVGNFQGAFKLKDEMEALGISSSDVAESAMVRGLAHCGKVEEAMLVLNRMLRMRLVPTIATFTTL  952 (1211)
Q Consensus       874 p~-~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~p~~~~~~~L  952 (1211)
                      |+ ..++..++.++...|++++|++.|+++++.+ +.+..++..++.++.+.|++++|++.|+++++..|. +..+|..+
T Consensus       234 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l  311 (388)
T 1w3b_A          234 PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPT-HADSLNNL  311 (388)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTT-CHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc-cHHHHHHH
Confidence            86 5889999999999999999999999999873 566788999999999999999999999999998765 89999999


Q ss_pred             HHHhhhhCCHHHHHHHHHHHHhcCCCCch-HHHHHHHHHHHhCCChhHHHHHHHHHHHcCCccCh-hhHHHHHHHHHhcc
Q 000951          953 IHKFCKEAKFVDALKLKGTMELSGVKLDV-VSYNVLISGLCANGDVMPAFELYEEMKHKGLCPNS-TTYSVLIDAISKKE 1030 (1211)
Q Consensus       953 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~~ 1030 (1211)
                      +.++...|++++|+..++.+...  .|+. .++..++.+|...|++++|.+.++++.+  +.|+. ..|..++..+...|
T Consensus       312 ~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~--~~p~~~~a~~~lg~~~~~~~  387 (388)
T 1w3b_A          312 ANIKREQGNIEEAVRLYRKALEV--FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR--ISPTFADAYSNMGNTLKEMQ  387 (388)
T ss_dssp             HHHHHTTTCHHHHHHHHHHHTTS--CTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT--TCTTCHHHHHHHHHHHHHTC
T ss_pred             HHHHHHcCCHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCCHHHHHhHHHHHHHcc
Confidence            99999999999999999877654  7864 4889999999999999999999999976  57766 88888877655443

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=99.96  E-value=9.9e-22  Score=240.25  Aligned_cols=841  Identities=13%  Similarity=0.104  Sum_probs=478.8

Q ss_pred             HHHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 000951          106 SVFDLLIRVYLREGMVEYALETFQLMGFRGFNPSVYTCNMMLSFMLKDRRVDSVWLLFDDMLDRKICPNVATFNILINVS  185 (1211)
Q Consensus       106 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~l~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~  185 (1211)
                      ..|..-...|...|++++|..+--..+ .|+-.+..|.+.+-.+=...|+..-....|.-+.+.| +.|..----+++..
T Consensus       362 ~l~~~~F~~l~~~g~y~~AA~~aa~sp-~giLRt~~ti~rfk~~~~~pgq~~pll~YF~~ll~~g-~Ln~~eSlEl~r~v  439 (1630)
T 1xi4_A          362 ELFARKFNALFAQGNYSEAAKVAANAP-KGILRTPDTIRRFQSVPAQPGQTSPLLQYFGILLDQG-QLNKYESLELCRPV  439 (1630)
T ss_pred             hHHHHHHHHHHHcCCHHHHHHHHHhCc-cccccCHHHHHHHHcCCCCCCCCCHHHHHHHHHHhcC-CCcHHHHHHHHHHH
Confidence            344445566777888888887776543 3555677777777776667777778888888888776 55655555566666


Q ss_pred             HhcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHH
Q 000951          186 CVEGKLKKAGYLLRKMEESGYVPNIVTYNTLLNWYCKKGRYKAAFKLIDCMASKGIEADVCTYNMFIDDLCRNNRSAKGY  265 (1211)
Q Consensus       186 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~  265 (1211)
                      ..+|+.+    +++++...    +..+++-=+.=+.+..+..-|+.+|-+..         ...-.+.++++.|+++++.
T Consensus       440 l~q~r~~----lle~Wl~e----~KL~~SEeLGDlv~~~d~~lAl~iY~~a~---------~~~Kvi~~l~~~gq~~ki~  502 (1630)
T 1xi4_A          440 LQQGRKQ----LLEKWLKE----DKLECSEELGDLVKSVDPTLALSVYLRAN---------VPNKVIQCFAETGQVQKIV  502 (1630)
T ss_pred             HHhchHH----HHHHHHHh----CCccccHHHHHHHHhcChHHHHHHHHhcC---------CcHHHHHHHHHhCCHHHHH
Confidence            6665543    44444443    22233222223334446777777776432         2246788889999999988


Q ss_pred             HHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 000951          266 LLLKNMRKRMITPNEVTYNTLINGFVKEGKIQVASRVFDEMSMLNFSPNSITYNELIDGHCCKGNFKEAFRLLAMMEEMG  345 (1211)
Q Consensus       266 ~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g  345 (1211)
                      .+-+   +.|..||   |..|+..+.+. +.+.|.++-..+.+..  |.....+.+++.+...+.+.++..++-+..+.+
T Consensus       503 ~Y~~---~~~~~pD---y~~ll~~~~~~-~P~~~~~fa~~L~~~~--~p~~d~~~ivd~f~~~~~iq~~t~fLld~lk~n  573 (1630)
T 1xi4_A          503 LYAK---KVGYTPD---WIFLLRNVMRI-SPDQGQQFAQMLVQDE--EPLADITQIVDVFMEYNLIQQCTAFLLDALKNN  573 (1630)
T ss_pred             HHHh---ccCCCcc---HHHHHHHHhhc-ChHHHHHHHHHHhcCC--CCccCHHHHHHHHHhcCcHHHHHHHHHHHHhCC
Confidence            8754   3466776   44566665544 5788888777666552  345668889999999999999999998888776


Q ss_pred             CCcCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC--CC-CCHhh
Q 000951          346 LRPNEVSYGALLNGFCKHAKFDLARSLLERMRTNGISISCIAYTSVIDGLCKCGLLDEAMQLFNKMFKDG--LN-PDLIT  422 (1211)
Q Consensus       346 ~~p~~~t~~~ll~~~~~~g~~~~a~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~-p~~~~  422 (1211)
                      -+-+...-+-++..-..     .|-++-+.+...++- +..-+..+...+-+.|-+++|++.|.++..-.  +. .....
T Consensus       574 ~~e~~~LQTrlle~Nl~-----~~pqvadail~~~~f-thyd~~~IA~LCE~aGl~qrale~y~d~~dikR~~~~~~~~~  647 (1630)
T 1xi4_A          574 RPSEGPLQTRLLEMNLM-----HAPQVADAILGNQMF-THYDRAHIAQLCEKAGLLQRALEHFTDLYDIKRAVVHTHLLN  647 (1630)
T ss_pred             ChhhhhHhHHHHHHhhc-----cchhHHHHHHhcCcc-ccccHHHHHHHHHHcCcHHHHHHhcCCHHHHHHHhhccCcCC
Confidence            33333444555544222     244455555555543 55567888888999999999999998664310  00 00011


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH-------------HHHHHHHHcCCHHHHHHHHHHHHHcCCCCC
Q 000951          423 FSVLINGFCKVGMTRKAKAVLCKMYRDGLVPNKIIYS-------------TLIYYFCKMGKVTEAMKVYAVMNRNAQGSD  489 (1211)
Q Consensus       423 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~-------------~li~~~~~~g~~~~A~~~~~~~~~~~~~~~  489 (1211)
                      -..|+ .|...=..+.+++.+++|+..++.-|.....             .++..+-+.+.++.-.-.+..+..  ...|
T Consensus       648 ~~~l~-~~fg~l~~~~s~~~l~~~l~~n~~qnlq~vvqva~ky~~~lg~~~li~~fe~~~~~egl~y~l~siv~--~s~d  724 (1630)
T 1xi4_A          648 PEWLV-NYFGSLSVEDSLECLRAMLSANIRQNLQICVQVASKYHEQLSTQSLIELFESFKSFEGLFYFLGSIVN--FSQD  724 (1630)
T ss_pred             HHHHH-HHHhcCCHHHHHHHHHHHHHHhHhhhhhhhhhHHHHHHhhcCHHHHHHHHHHhcchhhHHHHHHhhcc--ccCC
Confidence            11222 3334455688999999998765544433333             333444444444433333333332  3447


Q ss_pred             HHHHHHHHHHHHcCCChHHHHHHHHHH------------HhcCC---CC------------CHHHH------HHHHHHHH
Q 000951          490 HFTCNMLVASLCKGGKVCEAEDYVGHM------------KRIGV---VP------------NSITF------DCMIDGYG  536 (1211)
Q Consensus       490 ~~~~~~li~~~~~~g~~~~A~~~~~~~------------~~~g~---~p------------~~~~~------~~li~~~~  536 (1211)
                      ..+....|.+.++.|++.+.+++.++-            .+..+   .|            +.+.|      ...|..|.
T Consensus       725 ~~vhfkyi~aa~~~~q~~everi~res~~y~~e~vk~flk~~kl~d~~pli~vCdr~~~v~~l~~yLy~n~~~~~ie~yv  804 (1630)
T 1xi4_A          725 PDVHFKYIQAACKTGQIKEVERICRESNCYDPERVKNFLKEAKLTDQLPLIIVCDRFDFVHDLVLYLYRNNLQKYIEIYV  804 (1630)
T ss_pred             hHHHHHHHHHHHHhCCchhhhHHhccCCCCCHHHHHHHHhhCCCCCCCCceeeccccccHHHHHHHHHhcCchhHHHHHH
Confidence            778888999999999988887765441            11111   01            11111      12234443


Q ss_pred             hcCCHHHHHHHHHHHHHCCCCCCHHHHHHH-------------HHHHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHH
Q 000951          537 TLGDGLKAFSMFDEMVKLGHHPSIFTYGSL-------------LKGLCKGGNLKEAKRFLNSLHHIPSAVDTVAYNTILA  603 (1211)
Q Consensus       537 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l-------------l~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~  603 (1211)
                      +.-++..+-.+...+++.++.  ......|             +..+-+.+++.--...++.-...|.. ++.++|+|+.
T Consensus       805 ~~vnp~~~p~Vvg~lld~d~~--e~~ik~ll~~v~~~~~~~~lv~~~ekrnrLkll~p~LE~~~~~g~~-~~~~hnalak  881 (1630)
T 1xi4_A          805 QKVNPSRLPVVIGGLLDVDCS--EDVIKNLILVVRGQFSTDELVAEVEKRNRLKLLLPWLEARIHEGCE-EPATHNALAK  881 (1630)
T ss_pred             hccCCcccchhhhhhhcCCCC--HHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC-CHHHHHHHHH
Confidence            332222222222222211111  1111111             11112222222222223333333332 4555555555


Q ss_pred             HHHHcCCHHHH----------------------------------------------------H--------HHHHHHH-
Q 000951          604 ETCKSGNLWEA----------------------------------------------------I--------VLLDEMV-  622 (1211)
Q Consensus       604 ~~~~~g~~~~A----------------------------------------------------~--------~~~~~m~-  622 (1211)
                      .|...++-.+.                                                    .        +++...+ 
T Consensus       882 iyid~n~npe~fL~~n~~yd~~~vgkyce~rDp~la~iay~~g~~d~eli~vt~~n~l~k~~arylv~r~d~~lW~~vl~  961 (1630)
T 1xi4_A          882 IYIDSNNNPERFLRENPYYDSRVVGKYCEKRDPHLACVAYERGQCDLELINVCNENSLFKSLSRYLVRRKDPELWGSVLL  961 (1630)
T ss_pred             HHhccCCCHHHHhhccCcccHHHHHHHHHhcCcchHHHHhcccCCcHHHHHHHhcchhHHHHHHHHHHhcCHHHHHHHhc
Confidence            55433221111                                                    0        0111100 


Q ss_pred             --------------h----CCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCC-CCCCHHHHHHH-----------
Q 000951          623 --------------Q----FNLLPDRYTYTILLAGLCRKGKVVSALLFFEKVVSKRT-FSPNNVMFTCL-----------  672 (1211)
Q Consensus       623 --------------~----~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~p~~~~~~~l-----------  672 (1211)
                                    .    ....|+.+  ...+.+|...|.+.+|++++++++-.+. +..+...-+.+           
T Consensus       962 ~~n~~RR~Lidqv~a~aL~e~~~PeeV--s~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIkaD~~R 1039 (1630)
T 1xi4_A          962 ESNPYRRPLIDQVVQTALSETQDPEEV--SVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKADRTR 1039 (1630)
T ss_pred             CCcHHHHHHHHHHHHhhcccccCHHHh--HHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHhChhh
Confidence                          0    01112222  2344567788888888888888874331 11111222222           


Q ss_pred             ----------------HHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH
Q 000951          673 ----------------VDGLFKAGQSKAAMHISKIMDKEGVYPDTIAFNAVMDGFSRMGNMMMANDLLSTMRSRKLCPSL  736 (1211)
Q Consensus       673 ----------------~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~  736 (1211)
                                      ...+...|.+++|..+|++..     -.....+.+   +-..|++++|.++.+++.      ++
T Consensus      1040 v~eyI~kLd~~d~~eIA~Iai~lglyEEAf~IYkKa~-----~~~~A~~VL---ie~i~nldrAiE~Aervn------~p 1105 (1630)
T 1xi4_A         1040 VMEYINRLDNYDAPDIANIAISNELFEEAFAIFRKFD-----VNTSAVQVL---IEHIGNLDRAYEFAERCN------EP 1105 (1630)
T ss_pred             HHHHHHHhhhccHHHHHHHHHhCCCHHHHHHHHHHcC-----CHHHHHHHH---HHHHhhHHHHHHHHHhcC------CH
Confidence                            334455566666666665541     011111112   224566666666665442      46


Q ss_pred             HHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHH
Q 000951          737 ATYNILLHGYSKKKDLLMCSMLLNTMKMEGLLPDKLTCHSLILGFCETGMLEVGFKFLKKMIAEGTMVDCFTFNVLMRKC  816 (1211)
Q Consensus       737 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~  816 (1211)
                      .+|..++.++...|++++|++.|.++      .|...|..++.++.+.|++++|++++..+.+..  +++.+...++.+|
T Consensus      1106 ~vWsqLAKAql~~G~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaY 1177 (1630)
T 1xi4_A         1106 AVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFAL 1177 (1630)
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHH
Confidence            67777777777777777777777553      255566667777777777777777777766642  3333444577777


Q ss_pred             HhcCcHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhcchhhHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChhhHH
Q 000951          817 CEAGEMGKAFDLFNIMNMLGVVPDTNTQDAIIMGLKRIAAFQESHFVLRGMAEKGLTPKCTQYITLINGMCRVGNFQGAF  896 (1211)
Q Consensus       817 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~eA~  896 (1211)
                      ++.+++++ ++-|   ++   .++...|..++..|...|++++|..+|..+-         .|..++.++.+.|++++|.
T Consensus      1178 AKl~rlee-le~f---I~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA~---------ny~rLA~tLvkLge~q~AI 1241 (1630)
T 1xi4_A         1178 AKTNRLAE-LEEF---IN---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVS---------NFGRLASTLVHLGEYQAAV 1241 (1630)
T ss_pred             HhhcCHHH-HHHH---Hh---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhhh---------HHHHHHHHHHHhCCHHHHH
Confidence            77777664 3323   21   3455566667777777777777777777753         3777777777777777777


Q ss_pred             HHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCcccCHHHHHHHHHHhhhhCCHHHHHHHHHHHHhcC
Q 000951          897 KLKDEMEALGISSSDVAESAMVRGLAHCGKVEEAMLVLNRMLRMRLVPTIATFTTLIHKFCKEAKFVDALKLKGTMELSG  976 (1211)
Q Consensus       897 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~p~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~  976 (1211)
                      +.++++      .+..+|..+..++...|++..|......+.     .++..+..++..|.+.|.+++|+.+++.  .++
T Consensus      1242 EaarKA------~n~~aWkev~~acve~~Ef~LA~~cgl~Ii-----v~~deLeeli~yYe~~G~feEAI~LlE~--aL~ 1308 (1630)
T 1xi4_A         1242 DGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-----VHADELEELINYYQDRGYFEELITMLEA--ALG 1308 (1630)
T ss_pred             HHHHHh------CCHHHHHHHHHHHhhhhHHHHHHHHHHhhh-----cCHHHHHHHHHHHHHcCCHHHHHHHHHH--Hhc
Confidence            777766      234667777777777777777776644321     2455666778888888888888888754  345


Q ss_pred             CCCchH-HHHHHHHHHHhC--CChhHHHHHHHHHHHcCCcc------ChhhHHHHHHHHHhcccchHHHHHHHH
Q 000951          977 VKLDVV-SYNVLISGLCAN--GDVMPAFELYEEMKHKGLCP------NSTTYSVLIDAISKKENNLVKGEILLK 1041 (1211)
Q Consensus       977 ~~p~~~-~~~~l~~~~~~~--g~~~~a~~~~~~~~~~g~~p------~~~~~~~l~~~~~~~~~~~~~a~~~~~ 1041 (1211)
                      ++|.+. .|.-++.+|++.  ++..++.+.|....  .+.|      +...|.++.-.+.+.|.++.++..+.+
T Consensus      1309 LeraH~gmftELaiLyaKy~peklmEhlk~f~~ri--ni~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~ 1380 (1630)
T 1xi4_A         1309 LERAHMGMFTELAILYSKFKPQKMREHLELFWSRV--NIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMN 1380 (1630)
T ss_pred             cChhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhc--ccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHh
Confidence            566544 444555555543  45556666665442  2333      336788888888888888887754443

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=99.96  E-value=2.4e-21  Score=236.81  Aligned_cols=731  Identities=13%  Similarity=0.111  Sum_probs=394.0

Q ss_pred             hCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHHcCChHHHHH
Q 000951          152 KDRRVDSVWLLFDDMLDRKICPNVATFNILINVSCVEGKLKKAGYLLRKMEESGYVPNIVTYNTLLNWYCKKGRYKAAFK  231 (1211)
Q Consensus       152 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~  231 (1211)
                      +.-+...|..+|.+.   ++      ..-++.++|+.|+++++...-.   +.|+.||-   ..+++.+.+. +++.|.+
T Consensus       468 ~~~d~~lAl~iY~~a---~~------~~Kvi~~l~~~gq~~ki~~Y~~---~~~~~pDy---~~ll~~~~~~-~P~~~~~  531 (1630)
T 1xi4_A          468 KSVDPTLALSVYLRA---NV------PNKVIQCFAETGQVQKIVLYAK---KVGYTPDW---IFLLRNVMRI-SPDQGQQ  531 (1630)
T ss_pred             HhcChHHHHHHHHhc---CC------cHHHHHHHHHhCCHHHHHHHHh---ccCCCccH---HHHHHHHhhc-ChHHHHH
Confidence            333555566665532   11      2356667777777777666643   23555553   3455555544 4666666


Q ss_pred             HHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-----------------------------CHHH
Q 000951          232 LIDCMASKGIEADVCTYNMFIDDLCRNNRSAKGYLLLKNMRKRMITP-----------------------------NEVT  282 (1211)
Q Consensus       232 ~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-----------------------------~~~~  282 (1211)
                      +-..+....  |.....+.+++.+...+...++..++-+..+.+-+-                             +.+-
T Consensus       532 fa~~L~~~~--~p~~d~~~ivd~f~~~~~iq~~t~fLld~lk~n~~e~~~LQTrlle~Nl~~~pqvadail~~~~fthyd  609 (1630)
T 1xi4_A          532 FAQMLVQDE--EPLADITQIVDVFMEYNLIQQCTAFLLDALKNNRPSEGPLQTRLLEMNLMHAPQVADAILGNQMFTHYD  609 (1630)
T ss_pred             HHHHHhcCC--CCccCHHHHHHHHHhcCcHHHHHHHHHHHHhCCChhhhhHhHHHHHHhhccchhHHHHHHhcCcccccc
Confidence            666655542  234445666777777777777777666665543221                             2223


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhCC--CC-CChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHhH-------
Q 000951          283 YNTLINGFVKEGKIQVASRVFDEMSMLN--FS-PNSITYNELIDGHCCKGNFKEAFRLLAMMEEMGLRPNEVS-------  352 (1211)
Q Consensus       283 ~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t-------  352 (1211)
                      +..+...|-+.|-+..|++.|.++..-.  +. .....-.-++..+. .=..+.+++.+++|...+++-|...       
T Consensus       610 ~~~IA~LCE~aGl~qrale~y~d~~dikR~~~~~~~~~~~~l~~~fg-~l~~~~s~~~l~~~l~~n~~qnlq~vvqva~k  688 (1630)
T 1xi4_A          610 RAHIAQLCEKAGLLQRALEHFTDLYDIKRAVVHTHLLNPEWLVNYFG-SLSVEDSLECLRAMLSANIRQNLQICVQVASK  688 (1630)
T ss_pred             HHHHHHHHHHcCcHHHHHHhcCCHHHHHHHhhccCcCCHHHHHHHHh-cCCHHHHHHHHHHHHHHhHhhhhhhhhhHHHH
Confidence            4566677888899999999887653210  00 01111122333333 3567888899988887554433222       


Q ss_pred             ------HHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHH------------HhC
Q 000951          353 ------YGALLNGFCKHAKFDLARSLLERMRTNGISISCIAYTSVIDGLCKCGLLDEAMQLFNKM------------FKD  414 (1211)
Q Consensus       353 ------~~~ll~~~~~~g~~~~a~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m------------~~~  414 (1211)
                            -..++..+-+.+.++.-.-.+....  +..-|..+....|.+.++.|++.+.+++.++-            .+.
T Consensus       689 y~~~lg~~~li~~fe~~~~~egl~y~l~siv--~~s~d~~vhfkyi~aa~~~~q~~everi~res~~y~~e~vk~flk~~  766 (1630)
T 1xi4_A          689 YHEQLSTQSLIELFESFKSFEGLFYFLGSIV--NFSQDPDVHFKYIQAACKTGQIKEVERICRESNCYDPERVKNFLKEA  766 (1630)
T ss_pred             HHhhcCHHHHHHHHHHhcchhhHHHHHHhhc--cccCChHHHHHHHHHHHHhCCchhhhHHhccCCCCCHHHHHHHHhhC
Confidence                  2233333333333333333333222  23457788888999999999888877776541            111


Q ss_pred             CC---CC------------CHhhH------HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH-------------H
Q 000951          415 GL---NP------------DLITF------SVLINGFCKVGMTRKAKAVLCKMYRDGLVPNKIIYS-------------T  460 (1211)
Q Consensus       415 g~---~p------------~~~~~------~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~-------------~  460 (1211)
                      ..   .|            +.+.|      ...|..|.+.-++.++-.+...++.-+.  +.....             .
T Consensus       767 kl~d~~pli~vCdr~~~v~~l~~yLy~n~~~~~ie~yv~~vnp~~~p~Vvg~lld~d~--~e~~ik~ll~~v~~~~~~~~  844 (1630)
T 1xi4_A          767 KLTDQLPLIIVCDRFDFVHDLVLYLYRNNLQKYIEIYVQKVNPSRLPVVIGGLLDVDC--SEDVIKNLILVVRGQFSTDE  844 (1630)
T ss_pred             CCCCCCCceeeccccccHHHHHHHHHhcCchhHHHHHHhccCCcccchhhhhhhcCCC--CHHHHHHHHHHhccCCCHHH
Confidence            10   11            11111      1233344333332222222222222111  111111             1


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHH-------------------------------
Q 000951          461 LIYYFCKMGKVTEAMKVYAVMNRNAQGSDHFTCNMLVASLCKGGKVCEA-------------------------------  509 (1211)
Q Consensus       461 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A-------------------------------  509 (1211)
                      |+...-+.++..--...++.-...|.. +..++|+|+..|...++-.+.                               
T Consensus       845 lv~~~ekrnrLkll~p~LE~~~~~g~~-~~~~hnalakiyid~n~npe~fL~~n~~yd~~~vgkyce~rDp~la~iay~~  923 (1630)
T 1xi4_A          845 LVAEVEKRNRLKLLLPWLEARIHEGCE-EPATHNALAKIYIDSNNNPERFLRENPYYDSRVVGKYCEKRDPHLACVAYER  923 (1630)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCCC-CHHHHHHHHHHHhccCCCHHHHhhccCcccHHHHHHHHHhcCcchHHHHhcc
Confidence            222222333333333334444444443 666666666666544332111                               


Q ss_pred             ---------------------HH--------HHHHHH---------------h----cCCCCCHHHHHHHHHHHHhcCCH
Q 000951          510 ---------------------ED--------YVGHMK---------------R----IGVVPNSITFDCMIDGYGTLGDG  541 (1211)
Q Consensus       510 ---------------------~~--------~~~~~~---------------~----~g~~p~~~~~~~li~~~~~~g~~  541 (1211)
                                           +-        +|...+               .    ....|+  -....+.+|...|.+
T Consensus       924 g~~d~eli~vt~~n~l~k~~arylv~r~d~~lW~~vl~~~n~~RR~Lidqv~a~aL~e~~~Pe--eVs~~vKaf~~aglp 1001 (1630)
T 1xi4_A          924 GQCDLELINVCNENSLFKSLSRYLVRRKDPELWGSVLLESNPYRRPLIDQVVQTALSETQDPE--EVSVTVKAFMTADLP 1001 (1630)
T ss_pred             cCCcHHHHHHHhcchhHHHHHHHHHHhcCHHHHHHHhcCCcHHHHHHHHHHHHhhcccccCHH--HhHHHHHHHHhCCCH
Confidence                                 00        000000               0    000111  112234455555666


Q ss_pred             HHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHHcCCHHHHHHHHH
Q 000951          542 LKAFSMFDEMVKLGH--HPSIFTYGSLLKGLCKGGNLKEAKRFLNSLHHIPSAVDTVAYNTILAETCKSGNLWEAIVLLD  619 (1211)
Q Consensus       542 ~~A~~~~~~m~~~~~--~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~  619 (1211)
                      .+|++++++.+-.+-  ..+...-+.++.+..+. +.....++...+..       .....++..+...|.+++|..+|+
T Consensus      1002 ~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~-------~d~~eIA~Iai~lglyEEAf~IYk 1073 (1630)
T 1xi4_A         1002 NELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDN-------YDAPDIANIAISNELFEEAFAIFR 1073 (1630)
T ss_pred             HHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhh-------ccHHHHHHHHHhCCCHHHHHHHHH
Confidence            666666665552210  01122222233333332 23333333333221       012235556666777777777777


Q ss_pred             HHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC
Q 000951          620 EMVQFNLLPDRYTYTILLAGLCRKGKVVSALLFFEKVVSKRTFSPNNVMFTCLVDGLFKAGQSKAAMHISKIMDKEGVYP  699 (1211)
Q Consensus       620 ~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~  699 (1211)
                      +...     .....+.++   -..+++++|.++++++       -+..+|..+..++...|++++|+..|.+.      .
T Consensus      1074 Ka~~-----~~~A~~VLi---e~i~nldrAiE~Aerv-------n~p~vWsqLAKAql~~G~~kEAIdsYiKA------d 1132 (1630)
T 1xi4_A         1074 KFDV-----NTSAVQVLI---EHIGNLDRAYEFAERC-------NEPAVWSQLAKAQLQKGMVKEAIDSYIKA------D 1132 (1630)
T ss_pred             HcCC-----HHHHHHHHH---HHHhhHHHHHHHHHhc-------CCHHHHHHHHHHHHhCCCHHHHHHHHHhc------C
Confidence            6521     122222222   2556677777776644       12556777777777777777777777543      3


Q ss_pred             CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 000951          700 DTIAFNAVMDGFSRMGNMMMANDLLSTMRSRKLCPSLATYNILLHGYSKKKDLLMCSMLLNTMKMEGLLPDKLTCHSLIL  779 (1211)
Q Consensus       700 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~  779 (1211)
                      |...|..++..+.+.|++++|.+.+...++..  +++.....++.+|.+.+++++ ++.|   ++   .|+...|..++.
T Consensus      1133 D~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rlee-le~f---I~---~~n~ad~~~iGd 1203 (1630)
T 1xi4_A         1133 DPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAE-LEEF---IN---GPNNAHIQQVGD 1203 (1630)
T ss_pred             ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHH-HHHH---Hh---CCCHHHHHHHHH
Confidence            56666777777777777777777777766543  332223347777777777664 3333   22   245556666777


Q ss_pred             HHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhcchhh
Q 000951          780 GFCETGMLEVGFKFLKKMIAEGTMVDCFTFNVLMRKCCEAGEMGKAFDLFNIMNMLGVVPDTNTQDAIIMGLKRIAAFQE  859 (1211)
Q Consensus       780 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~e  859 (1211)
                      .|...|++++|..+|..+         ..|..++.+|.+.|++++|++.++++      .+..+|..+..+|...|++..
T Consensus      1204 ~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~~acve~~Ef~L 1268 (1630)
T 1xi4_A         1204 RCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRL 1268 (1630)
T ss_pred             HHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHHHhhhhHHHH
Confidence            777777888887777775         26777777777777788887777766      345777777777777777777


Q ss_pred             HHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCchHHHHHHHHHHHh--cCCHHHHHHHHHHH
Q 000951          860 SHFVLRGMAEKGLTPKCTQYITLINGMCRVGNFQGAFKLKDEMEALGISSSDVAESAMVRGLAH--CGKVEEAMLVLNRM  937 (1211)
Q Consensus       860 A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~g~~~eA~~~~~~~  937 (1211)
                      |......     +.-+...+..++..|...|.+++|+.+++..+... +.....|..++.+|.+  -++..++++.|..-
T Consensus      1269 A~~cgl~-----Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftELaiLyaKy~peklmEhlk~f~~r 1342 (1630)
T 1xi4_A         1269 AQMCGLH-----IVVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWSR 1342 (1630)
T ss_pred             HHHHHHh-----hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence            7776654     22233445677777788888888888887777553 4445566666655554  35577777777765


Q ss_pred             HhCCcc----cCHHHHHHHHHHhhhhCCHHHHHH
Q 000951          938 LRMRLV----PTIATFTTLIHKFCKEAKFVDALK  967 (1211)
Q Consensus       938 ~~~~~~----p~~~~~~~L~~~~~~~g~~~~A~~  967 (1211)
                      +..++.    .+...|..+...|.+.|+++.|..
T Consensus      1343 ini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~ 1376 (1630)
T 1xi4_A         1343 VNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 1376 (1630)
T ss_pred             cccchHhHHHHHHHHHHHHHHHHHhcccHHHHHH
Confidence            544320    156677888888888888887773

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=99.96  E-value=4.8e-28  Score=284.19  Aligned_cols=204  Identities=15%  Similarity=0.173  Sum_probs=123.3

Q ss_pred             HHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHHcCC---------hHH
Q 000951          159 VWLLFDDMLDRKICPN-VATFNILINVSCVEGKLKKAGYLLRKMEESGYVPNIVTYNTLLNWYCKKGR---------YKA  228 (1211)
Q Consensus       159 a~~~~~~m~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~---------~~~  228 (1211)
                      +..+..++.+.+..+. ...++.+|.+||+.|++++|.++|++|.+.|+.||.+|||+||.+|++.+.         +++
T Consensus         9 ~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~   88 (501)
T 4g26_A            9 SENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSR   88 (501)
T ss_dssp             ---------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHH
T ss_pred             HHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHH
Confidence            3344444444443322 223555566666666666666666666666666666666666666655443         456


Q ss_pred             HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 000951          229 AFKLIDCMASKGIEADVCTYNMFIDDLCRNNRSAKGYLLLKNMRKRMITPNEVTYNTLINGFVKEGKIQVASRVFDEMSM  308 (1211)
Q Consensus       229 A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~  308 (1211)
                      |.++|++|...|+.||..||++||++|++.|++++|..+|++|.+.|+.||..|||++|.+|++.|++++|.++|++|.+
T Consensus        89 A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~  168 (501)
T 4g26_A           89 GFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVE  168 (501)
T ss_dssp             HHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHh
Confidence            66666666666666666666666666666666666666666666666666666666666666666666666666666666


Q ss_pred             CCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHhHHHHHHHHHHh
Q 000951          309 LNFSPNSITYNELIDGHCCKGNFKEAFRLLAMMEEMGLRPNEVSYGALLNGFCK  362 (1211)
Q Consensus       309 ~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~  362 (1211)
                      .|+.||..+|++||.+|++.|++++|.++|++|.+.|..|+..||+.++..|+.
T Consensus       169 ~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s  222 (501)
T 4g26_A          169 SEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS  222 (501)
T ss_dssp             TTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred             cCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence            666666666666666666666666666666666666666666666666666654

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=99.96  E-value=8.3e-28  Score=282.16  Aligned_cols=205  Identities=21%  Similarity=0.274  Sum_probs=136.1

Q ss_pred             HHHHHHHHHHHcCCCCCH-hHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC---------hH
Q 000951          193 KAGYLLRKMEESGYVPNI-VTYNTLLNWYCKKGRYKAAFKLIDCMASKGIEADVCTYNMFIDDLCRNNR---------SA  262 (1211)
Q Consensus       193 ~A~~~~~~m~~~g~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~---------~~  262 (1211)
                      .+..+..++.+.+..+.. ..++.+|.+|++.|++++|+++|++|.+.|++||..|||+||.+|++.+.         .+
T Consensus         8 ~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~   87 (501)
T 4g26_A            8 PSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLS   87 (501)
T ss_dssp             ----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHH
T ss_pred             hHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHH
Confidence            345566666666655443 35777888888888888888888888888888888888888888877654         45


Q ss_pred             HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 000951          263 KGYLLLKNMRKRMITPNEVTYNTLINGFVKEGKIQVASRVFDEMSMLNFSPNSITYNELIDGHCCKGNFKEAFRLLAMME  342 (1211)
Q Consensus       263 ~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~  342 (1211)
                      +|.++|++|.+.|+.||.+|||+||.+|++.|++++|.++|++|.+.|+.||..+||++|.+|++.|++++|.++|++|.
T Consensus        88 ~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~  167 (501)
T 4g26_A           88 RGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMV  167 (501)
T ss_dssp             HHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHH
Confidence            66666777766666677777777777777777777777777776666666666667777766666666666666666666


Q ss_pred             HCCCCcCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHH
Q 000951          343 EMGLRPNEVSYGALLNGFCKHAKFDLARSLLERMRTNGISISCIAYTSVIDGLCK  397 (1211)
Q Consensus       343 ~~g~~p~~~t~~~ll~~~~~~g~~~~a~~l~~~~~~~~~~~~~~~~~~li~~~~~  397 (1211)
                      +.|+.||..||++||.+|++.|++++|.+++++|.+.+..|+..||+.++..|+.
T Consensus       168 ~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s  222 (501)
T 4g26_A          168 ESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS  222 (501)
T ss_dssp             HTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred             hcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence            6666666666666666666666666666666666666666666666666666654

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.93  E-value=2.9e-23  Score=250.89  Aligned_cols=271  Identities=11%  Similarity=-0.010  Sum_probs=217.2

Q ss_pred             HHHHHHHHHHHHc---cCChHHHHHHHHHHHH-----CCCC-------C-CHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 000951          736 LATYNILLHGYSK---KKDLLMCSMLLNTMKM-----EGLL-------P-DKLTCHSLILGFCETGMLEVGFKFLKKMIA  799 (1211)
Q Consensus       736 ~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~-----~g~~-------p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  799 (1211)
                      ...+..++..+..   .|++++|+..|+++++     ....       | +..++..++..+...|++++|+..++++++
T Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~  265 (514)
T 2gw1_A          186 ADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIE  265 (514)
T ss_dssp             HHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence            5566666666554   8889999999988887     3112       2 234667778888899999999999999988


Q ss_pred             cCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhcchhhHHHHHHHHHHcCCCCC-hhH
Q 000951          800 EGTMVDCFTFNVLMRKCCEAGEMGKAFDLFNIMNMLGVVPDTNTQDAIIMGLKRIAAFQESHFVLRGMAEKGLTPK-CTQ  878 (1211)
Q Consensus       800 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~g~~p~-~~~  878 (1211)
                      ..  |+..++..++.+|...|++++|++.|+++.+.. +.+...|..++..|...|++++|+..|+++++  ..|+ ..+
T Consensus       266 ~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~  340 (514)
T 2gw1_A          266 LF--PRVNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQNYDQAGKDFDKAKE--LDPENIFP  340 (514)
T ss_dssp             HC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHH--TCSSCSHH
T ss_pred             hC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH--hChhhHHH
Confidence            64  337788888889999999999999999988753 34577888899999999999999999999988  6675 478


Q ss_pred             HHHHHHHHHhcCChhhHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCccc-C----HHHHHHHH
Q 000951          879 YITLINGMCRVGNFQGAFKLKDEMEALGISSSDVAESAMVRGLAHCGKVEEAMLVLNRMLRMRLVP-T----IATFTTLI  953 (1211)
Q Consensus       879 ~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~p-~----~~~~~~L~  953 (1211)
                      +..++.++...|++++|...|+++.+. .+.+..++..++.++...|++++|+..|+++++..+.. +    ..+|..++
T Consensus       341 ~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~  419 (514)
T 2gw1_A          341 YIQLACLAYRENKFDDCETLFSEAKRK-FPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKA  419 (514)
T ss_dssp             HHHHHHHTTTTTCHHHHHHHHHHHHHH-STTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHH-cccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHH
Confidence            888899999999999999999999876 35567788889999999999999999999998865441 1    33888999


Q ss_pred             HHhhh---hCCHHHHHHHHHHHHhcCCCCch-HHHHHHHHHHHhCCChhHHHHHHHHHHHcCCccCh
Q 000951          954 HKFCK---EAKFVDALKLKGTMELSGVKLDV-VSYNVLISGLCANGDVMPAFELYEEMKHKGLCPNS 1016 (1211)
Q Consensus       954 ~~~~~---~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~p~~ 1016 (1211)
                      .++..   .|++++|+..++.....  .|+. .++..++.+|...|++++|.+.+++..+  +.|+.
T Consensus       420 ~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~--~~~~~  482 (514)
T 2gw1_A          420 TLLTRNPTVENFIEATNLLEKASKL--DPRSEQAKIGLAQMKLQQEDIDEAITLFEESAD--LARTM  482 (514)
T ss_dssp             HHHHTSCCTTHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCSSH
T ss_pred             HHHhhhhhcCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hcccc
Confidence            99999   89999999998877765  6754 4788888899999999999999998876  45555

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.93  E-value=1.9e-23  Score=252.44  Aligned_cols=273  Identities=9%  Similarity=-0.079  Sum_probs=228.3

Q ss_pred             HHHHHHHHHHHHh---cCChHHHHHHHHHHHH-----CCCC-------C-CHHHHHHHHHHHHccCChHHHHHHHHHHHH
Q 000951          701 TIAFNAVMDGFSR---MGNMMMANDLLSTMRS-----RKLC-------P-SLATYNILLHGYSKKKDLLMCSMLLNTMKM  764 (1211)
Q Consensus       701 ~~~~~~li~~~~~---~g~~~~A~~~~~~~~~-----~~~~-------p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  764 (1211)
                      ...+......+..   .|++++|...|+++.+     ....       | +..+|..++..+...|++++|+..|+++++
T Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~  265 (514)
T 2gw1_A          186 ADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIE  265 (514)
T ss_dssp             HHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence            4444444444544   7899999999998886     2112       2 467788899999999999999999999998


Q ss_pred             CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHHHHHCCCCCChhhH
Q 000951          765 EGLLPDKLTCHSLILGFCETGMLEVGFKFLKKMIAEGTMVDCFTFNVLMRKCCEAGEMGKAFDLFNIMNMLGVVPDTNTQ  844 (1211)
Q Consensus       765 ~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~  844 (1211)
                      .  .|+...+..++.+|...|++++|+..++++++.. +.+..++..++.+|...|++++|++.|+++.+.. +.+...+
T Consensus       266 ~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~  341 (514)
T 2gw1_A          266 L--FPRVNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELD-PENIFPY  341 (514)
T ss_dssp             H--CCCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTC-SSCSHHH
T ss_pred             h--CccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-hhhHHHH
Confidence            4  4556678888899999999999999999999853 3356788899999999999999999999998854 3357789


Q ss_pred             HHHHHHHHhhcchhhHHHHHHHHHHcCCCCC-hhHHHHHHHHHHhcCChhhHHHHHHHHHHcCCC-Cc----hHHHHHHH
Q 000951          845 DAIIMGLKRIAAFQESHFVLRGMAEKGLTPK-CTQYITLINGMCRVGNFQGAFKLKDEMEALGIS-SS----DVAESAMV  918 (1211)
Q Consensus       845 ~~l~~~~~~~g~~~eA~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~-~~----~~~~~~l~  918 (1211)
                      ..++..|...|++++|+..|+++++  ..|+ ..++..++.++...|++++|...|+++.+.... +.    ..++..++
T Consensus       342 ~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~  419 (514)
T 2gw1_A          342 IQLACLAYRENKFDDCETLFSEAKR--KFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKA  419 (514)
T ss_dssp             HHHHHHTTTTTCHHHHHHHHHHHHH--HSTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHH--HcccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHH
Confidence            9999999999999999999999998  6675 478999999999999999999999999864211 11    33889999


Q ss_pred             HHHHh---cCCHHHHHHHHHHHHhCCcccCHHHHHHHHHHhhhhCCHHHHHHHHHHHHhcCCCCchH
Q 000951          919 RGLAH---CGKVEEAMLVLNRMLRMRLVPTIATFTTLIHKFCKEAKFVDALKLKGTMELSGVKLDVV  982 (1211)
Q Consensus       919 ~~~~~---~g~~~eA~~~~~~~~~~~~~p~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~  982 (1211)
                      .++..   .|++++|+..|+++++..+. +..+|..++.+|...|++++|...|+.....  .|+..
T Consensus       420 ~~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~  483 (514)
T 2gw1_A          420 TLLTRNPTVENFIEATNLLEKASKLDPR-SEQAKIGLAQMKLQQEDIDEAITLFEESADL--ARTME  483 (514)
T ss_dssp             HHHHTSCCTTHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSSHH
T ss_pred             HHHhhhhhcCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--ccccH
Confidence            99999   99999999999999998765 8889999999999999999999999987776  78665

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.92  E-value=6.6e-22  Score=234.37  Aligned_cols=324  Identities=12%  Similarity=-0.013  Sum_probs=143.6

Q ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCCHHHHHHHH
Q 000951          594 DTVAYNTILAETCKSGNLWEAIVLLDEMVQFNLLPDRYTYTILLAGLCRKGKVVSALLFFEKVVSKRTFSPNNVMFTCLV  673 (1211)
Q Consensus       594 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~  673 (1211)
                      +...+..++..+.+.|++++|+..|+++++.. +.+..+|..+...+...|++++|+..|+++++.+  +.+...+..++
T Consensus        25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~  101 (450)
T 2y4t_A           25 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK--MDFTAARLQRG  101 (450)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCcHHHHHHHH
Confidence            34445555555555555555555555554432 2234444445555555555555555555554432  22244444444


Q ss_pred             HHHHHcCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc
Q 000951          674 DGLFKAGQSKAAMHISKIMDKEGVYPDT----IAFNAVMDGFSRMGNMMMANDLLSTMRSRKLCPSLATYNILLHGYSKK  749 (1211)
Q Consensus       674 ~~~~~~g~~~~A~~~~~~~~~~g~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~  749 (1211)
                      .+|...|++++|...|+.+.+.  .|+.    ..+..++..+..                       ..+..++..+...
T Consensus       102 ~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~-----------------------~~~~~~a~~~~~~  156 (450)
T 2y4t_A          102 HLLLKQGKLDEAEDDFKKVLKS--NPSENEEKEAQSQLIKSDEM-----------------------QRLRSQALNAFGS  156 (450)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHhc--CCCChhhHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHc
Confidence            4444444444444444444433  2221    222222222100                       0111223334445


Q ss_pred             CChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCcHHHHHHH
Q 000951          750 KDLLMCSMLLNTMKMEGLLP-DKLTCHSLILGFCETGMLEVGFKFLKKMIAEGTMVDCFTFNVLMRKCCEAGEMGKAFDL  828 (1211)
Q Consensus       750 g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~  828 (1211)
                      |++++|+..|+++++.  .| +...+..++.+|...|++++|+..++++++.. +.+..++..++.+|...|++++|++.
T Consensus       157 ~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~  233 (450)
T 2y4t_A          157 GDYTAAIAFLDKILEV--CVWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSE  233 (450)
T ss_dssp             TCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence            5555555555555542  22 33444445555555555555555555554431 22344455555555555555555555


Q ss_pred             HHHHHHCCCCCChhhHHHH------------HHHHHhhcchhhHHHHHHHHHHcCCCCC-----hhHHHHHHHHHHhcCC
Q 000951          829 FNIMNMLGVVPDTNTQDAI------------IMGLKRIAAFQESHFVLRGMAEKGLTPK-----CTQYITLINGMCRVGN  891 (1211)
Q Consensus       829 ~~~~~~~~~~~~~~~~~~l------------~~~~~~~g~~~eA~~~~~~~~~~g~~p~-----~~~~~~l~~~~~~~g~  891 (1211)
                      |+++.+.. +.+...+..+            +..|...|++++|+..|+++++  ..|+     ...+..++.++.+.|+
T Consensus       234 ~~~~~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~--~~p~~~~~~~~~~~~l~~~~~~~g~  310 (450)
T 2y4t_A          234 VRECLKLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMK--TEPSIAEYTVRSKERICHCFSKDEK  310 (450)
T ss_dssp             HHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCCSSHHHHHHHHHHHHHHHHTTTC
T ss_pred             HHHHHHhC-CChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCcchHHHHHHHHHHHHHHHHCCC
Confidence            55554321 1112222222            4444444455555555554444  3333     1234444444444444


Q ss_pred             hhhHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCcccCHHHHHHHH
Q 000951          892 FQGAFKLKDEMEALGISSSDVAESAMVRGLAHCGKVEEAMLVLNRMLRMRLVPTIATFTTLI  953 (1211)
Q Consensus       892 ~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~p~~~~~~~L~  953 (1211)
                      +++|+..++++++.. +.+..+|..++.++...|++++|...|+++++..|. +..++..++
T Consensus       311 ~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~  370 (450)
T 2y4t_A          311 PVEAIRVCSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNEN-DQQIREGLE  370 (450)
T ss_dssp             HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSS-CHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcc-hHHHHHHHH
Confidence            444444444444331 333444444444444444444444444444444333 444444444

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.91  E-value=4e-22  Score=242.34  Aligned_cols=433  Identities=14%  Similarity=0.060  Sum_probs=278.6

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHH
Q 000951          526 ITFDCMIDGYGTLGDGLKAFSMFDEMVKLGHHPSIFTYGSLLKGLCKGGNLKEAKRFLNSLHHIPSAVDTVAYNTILAET  605 (1211)
Q Consensus       526 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~  605 (1211)
                      ..|..+...+.+.|++++|+..|+++++.. +.+..++..+..++...|++++|.+.++.+.+..+. +..++..++..+
T Consensus        26 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~  103 (537)
T 3fp2_A           26 VQLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPD-HSKALLRRASAN  103 (537)
T ss_dssp             HHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-hHHHHHHHHHHH
Confidence            344555555555566666666666555542 234555555555555566666666666655554443 555666666666


Q ss_pred             HHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcC-----CCCCCHHHHHHHHHHHHHcC
Q 000951          606 CKSGNLWEAIVLLDEMVQFNLLPDRYTYTILLAGLCRKGKVVSALLFFEKVVSKR-----TFSPNNVMFTCLVDGLFKAG  680 (1211)
Q Consensus       606 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-----~~~p~~~~~~~l~~~~~~~g  680 (1211)
                      ...|++++|+..|+ ....  .|+...  ..+..+...+...+|...+++++...     ...|+.    ..+..+....
T Consensus       104 ~~~g~~~~A~~~~~-~~~~--~~~~~~--~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~----~~~~~~~~~~  174 (537)
T 3fp2_A          104 ESLGNFTDAMFDLS-VLSL--NGDFDG--ASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSN----TSLASFFGIF  174 (537)
T ss_dssp             HHHTCHHHHHHHHH-HHC---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCH----HHHHHHHHTS
T ss_pred             HHcCCHHHHHHHHH-HHhc--CCCCCh--HHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchH----hHHHHHHHhc
Confidence            66666666666664 3222  122111  12223344444566666666665431     012222    2233344455


Q ss_pred             CHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHH--------hcCChHHHHHHHHHHHHCCCCCC--------HHHHHHHH
Q 000951          681 QSKAAMHISKIMDKEGVYPDT-IAFNAVMDGFS--------RMGNMMMANDLLSTMRSRKLCPS--------LATYNILL  743 (1211)
Q Consensus       681 ~~~~A~~~~~~~~~~g~~~~~-~~~~~li~~~~--------~~g~~~~A~~~~~~~~~~~~~p~--------~~~~~~l~  743 (1211)
                      +.+.+...+......  .+.. .....+...+.        ..|++++|..+++++.+.  .|+        ..++..++
T Consensus       175 ~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~~~~~g  250 (537)
T 3fp2_A          175 DSHLEVSSVNTSSNY--DTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSA--NTVDDPLRENAALALCYTG  250 (537)
T ss_dssp             CHHHHHHTSCCCCSS--CSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHH
T ss_pred             ChHHHHHHHhhcccc--ccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH--CCCcchhhHHHHHHHHHHH
Confidence            555554443332211  1221 12222222222        235788888888888853  443        23466677


Q ss_pred             HHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCcHH
Q 000951          744 HGYSKKKDLLMCSMLLNTMKMEGLLPDKLTCHSLILGFCETGMLEVGFKFLKKMIAEGTMVDCFTFNVLMRKCCEAGEMG  823 (1211)
Q Consensus       744 ~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~  823 (1211)
                      ..+...|++++|+..|+++++  ..|+...+..++..|...|++++|+..++++++.. +.+..++..++.+|...|+++
T Consensus       251 ~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~  327 (537)
T 3fp2_A          251 IFHFLKNNLLDAQVLLQESIN--LHPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYK  327 (537)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHH--HCCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHhcccHHHHHHHHHHHHh--cCCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHH
Confidence            788888899999999998888  45666777778888888899999999999888753 335677888888888999999


Q ss_pred             HHHHHHHHHHHCCCCCChhhHHHHHHHHHhhcchhhHHHHHHHHHHcCCCCC-hhHHHHHHHHHHhcCChhhHHHHHHHH
Q 000951          824 KAFDLFNIMNMLGVVPDTNTQDAIIMGLKRIAAFQESHFVLRGMAEKGLTPK-CTQYITLINGMCRVGNFQGAFKLKDEM  902 (1211)
Q Consensus       824 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~eA~~~~~~~  902 (1211)
                      +|++.|+++.+.. +.+...|..++..|...|++++|+..|+++++  ..|+ ...+..++.++...|++++|...|+++
T Consensus       328 ~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a  404 (537)
T 3fp2_A          328 NAKEDFQKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKL--KFPTLPEVPTFFAEILTDRGDFDTAIKQYDIA  404 (537)
T ss_dssp             HHHHHHHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence            9999998888743 23467788888888899999999999999888  5675 467888888888999999999999988


Q ss_pred             HHcCCC-----CchHHHHHHHHHHHhc----------CCHHHHHHHHHHHHhCCcccCHHHHHHHHHHhhhhCCHHHHHH
Q 000951          903 EALGIS-----SSDVAESAMVRGLAHC----------GKVEEAMLVLNRMLRMRLVPTIATFTTLIHKFCKEAKFVDALK  967 (1211)
Q Consensus       903 ~~~~~~-----~~~~~~~~l~~~~~~~----------g~~~eA~~~~~~~~~~~~~p~~~~~~~L~~~~~~~g~~~~A~~  967 (1211)
                      ++....     .....+..++.++...          |++++|+..|+++++..|. +..+|..++.+|...|++++|+.
T Consensus       405 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~l~~~~~~~g~~~~A~~  483 (537)
T 3fp2_A          405 KRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPR-SEQAKIGLAQLKLQMEKIDEAIE  483 (537)
T ss_dssp             HHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhccHHHHHH
Confidence            754211     1122345566777777          8899999999999887765 78888899999999999999999


Q ss_pred             HHHHHHhcCCCCchH
Q 000951          968 LKGTMELSGVKLDVV  982 (1211)
Q Consensus       968 ~~~~~~~~~~~p~~~  982 (1211)
                      .|+.....  .|+..
T Consensus       484 ~~~~al~~--~~~~~  496 (537)
T 3fp2_A          484 LFEDSAIL--ARTMD  496 (537)
T ss_dssp             HHHHHHHH--C--CH
T ss_pred             HHHHHHHh--CCCcH
Confidence            88877766  66544

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.91  E-value=1.1e-21  Score=232.30  Aligned_cols=328  Identities=16%  Similarity=0.053  Sum_probs=232.1

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHH
Q 000951          666 NVMFTCLVDGLFKAGQSKAAMHISKIMDKEGVYPDTIAFNAVMDGFSRMGNMMMANDLLSTMRSRKLCP-SLATYNILLH  744 (1211)
Q Consensus       666 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~  744 (1211)
                      ...+..++..+.+.|++++|+..|+.+++.. +.+...+..++..|...|++++|...|+++.+.  .| +..+|..++.
T Consensus        26 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~  102 (450)
T 2y4t_A           26 VEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQL--KMDFTAARLQRGH  102 (450)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCcHHHHHHHHH
Confidence            3344444444444444444444444443321 223444444444444444444444444444432  22 3444444455


Q ss_pred             HHHccCChHHHHHHHHHHHHCCCCCCH----HH------------HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhh
Q 000951          745 GYSKKKDLLMCSMLLNTMKMEGLLPDK----LT------------CHSLILGFCETGMLEVGFKFLKKMIAEGTMVDCFT  808 (1211)
Q Consensus       745 ~~~~~g~~~~A~~~~~~~~~~g~~p~~----~~------------~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~  808 (1211)
                      +|.+.|++++|+..|+++.+  ..|+.    ..            +..++..+...|++++|+..++++++.. +.+..+
T Consensus       103 ~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~  179 (450)
T 2y4t_A          103 LLLKQGKLDEAEDDFKKVLK--SNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC-VWDAEL  179 (450)
T ss_dssp             HHHHTTCHHHHHHHHHHHHT--SCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHh--cCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHH
Confidence            55555555555555555444  22322    22            2234566889999999999999999853 346788


Q ss_pred             HHHHHHHHHhcCcHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhcchhhHHHHHHHHHHcCCCCCh-hHHHHH-----
Q 000951          809 FNVLMRKCCEAGEMGKAFDLFNIMNMLGVVPDTNTQDAIIMGLKRIAAFQESHFVLRGMAEKGLTPKC-TQYITL-----  882 (1211)
Q Consensus       809 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~g~~p~~-~~~~~l-----  882 (1211)
                      +..++.+|.+.|++++|++.|+++.+.. +.+..+|..++.+|...|++++|+..|+++++  ..|+. ..+..+     
T Consensus       180 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~~~~~~~~  256 (450)
T 2y4t_A          180 RELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLK--LDQDHKRCFAHYKQVKK  256 (450)
T ss_dssp             HHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCChHHHHHHHHHHHH
Confidence            9999999999999999999999998743 35688999999999999999999999999998  77765 444444     


Q ss_pred             -------HHHHHhcCChhhHHHHHHHHHHcCCCCc----hHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCcccCHHHHHH
Q 000951          883 -------INGMCRVGNFQGAFKLKDEMEALGISSS----DVAESAMVRGLAHCGKVEEAMLVLNRMLRMRLVPTIATFTT  951 (1211)
Q Consensus       883 -------~~~~~~~g~~~eA~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~p~~~~~~~  951 (1211)
                             +.++.+.|++++|...|+++++.. +.+    ..++..++.++.+.|++++|+..++++++..|. +..+|..
T Consensus       257 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~-~~~~~~~  334 (450)
T 2y4t_A          257 LNKLIESAEELIRDGRYTDATSKYESVMKTE-PSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPD-NVNALKD  334 (450)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHH
Confidence                   899999999999999999998763 223    347889999999999999999999999998755 8899999


Q ss_pred             HHHHhhhhCCHHHHHHHHHHHHhcCCCCchH-HHHHHH------------HHHHhCC-----ChhHHHHHHHH
Q 000951          952 LIHKFCKEAKFVDALKLKGTMELSGVKLDVV-SYNVLI------------SGLCANG-----DVMPAFELYEE 1006 (1211)
Q Consensus       952 L~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~l~------------~~~~~~g-----~~~~a~~~~~~ 1006 (1211)
                      ++.+|...|++++|+..|+.....  .|+.. .+..++            ..|...|     +.+++.+.+++
T Consensus       335 l~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~  405 (450)
T 2y4t_A          335 RAEAYLIEEMYDEAIQDYETAQEH--NENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRK  405 (450)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHTT--SSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHH
T ss_pred             HHHHHHHhcCHHHHHHHHHHHHHh--CcchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHH
Confidence            999999999999999999877765  88654 677777            3455555     44566766665

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.91  E-value=4.9e-22  Score=241.54  Aligned_cols=427  Identities=14%  Similarity=0.077  Sum_probs=320.0

Q ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 000951          560 IFTYGSLLKGLCKGGNLKEAKRFLNSLHHIPSAVDTVAYNTILAETCKSGNLWEAIVLLDEMVQFNLLPDRYTYTILLAG  639 (1211)
Q Consensus       560 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~  639 (1211)
                      ...+..+...+.+.|++++|...|+.+++..+. ++..+..++.+|.+.|++++|++.|+++++.+ +.+...+..+...
T Consensus        25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~  102 (537)
T 3fp2_A           25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPN-EPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASA  102 (537)
T ss_dssp             HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCC-CcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHH
Confidence            456677777888888888888888888877654 67788888888888888888888888888764 3356778888888


Q ss_pred             HHhCCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC------CCCCCHHHHHHHHHHHHh
Q 000951          640 LCRKGKVVSALLFFEKVVSKRTFSPNNVMFTCLVDGLFKAGQSKAAMHISKIMDKE------GVYPDTIAFNAVMDGFSR  713 (1211)
Q Consensus       640 ~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------g~~~~~~~~~~li~~~~~  713 (1211)
                      +...|++++|+..|+ .+.   ..|+..  ...+..+...+....|...++.++..      ...|+.    ..+..+..
T Consensus       103 ~~~~g~~~~A~~~~~-~~~---~~~~~~--~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~----~~~~~~~~  172 (537)
T 3fp2_A          103 NESLGNFTDAMFDLS-VLS---LNGDFD--GASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSN----TSLASFFG  172 (537)
T ss_dssp             HHHHTCHHHHHHHHH-HHC----------------CHHHHHHHHHHHHHHHHHCC-------CCCCCH----HHHHHHHH
T ss_pred             HHHcCCHHHHHHHHH-HHh---cCCCCC--hHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchH----hHHHHHHH
Confidence            888888888888885 443   233321  11233445555667788888877543      112332    23334555


Q ss_pred             cCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHcc--------CChHHHHHHHHHHHHCCCCCCH--------HHHHH
Q 000951          714 MGNMMMANDLLSTMRSRKLCPS-LATYNILLHGYSKK--------KDLLMCSMLLNTMKMEGLLPDK--------LTCHS  776 (1211)
Q Consensus       714 ~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~--------g~~~~A~~~~~~~~~~g~~p~~--------~~~~~  776 (1211)
                      ..+.+.+...+.....  ..+. ......+...+...        |++++|+..|+++++  ..|+.        .++..
T Consensus       173 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~--~~p~~~~~~~~~~~~~~~  248 (537)
T 3fp2_A          173 IFDSHLEVSSVNTSSN--YDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLS--ANTVDDPLRENAALALCY  248 (537)
T ss_dssp             TSCHHHHHHTSCCCCS--SCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHH
T ss_pred             hcChHHHHHHHhhccc--cccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH--HCCCcchhhHHHHHHHHH
Confidence            5666555544433321  2222 22334444443332        489999999999987  44542        24666


Q ss_pred             HHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhcc
Q 000951          777 LILGFCETGMLEVGFKFLKKMIAEGTMVDCFTFNVLMRKCCEAGEMGKAFDLFNIMNMLGVVPDTNTQDAIIMGLKRIAA  856 (1211)
Q Consensus       777 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~  856 (1211)
                      ++..+...|++++|+..++++++.  .|+...+..++.+|...|++++|++.|+++.+.. +.+..+|..++..|...|+
T Consensus       249 ~g~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~  325 (537)
T 3fp2_A          249 TGIFHFLKNNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQD  325 (537)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHhcccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCC
Confidence            778889999999999999999985  4567888899999999999999999999998754 3458889999999999999


Q ss_pred             hhhHHHHHHHHHHcCCCCC-hhHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHH
Q 000951          857 FQESHFVLRGMAEKGLTPK-CTQYITLINGMCRVGNFQGAFKLKDEMEALGISSSDVAESAMVRGLAHCGKVEEAMLVLN  935 (1211)
Q Consensus       857 ~~eA~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~  935 (1211)
                      +++|+..|+++++  ..|+ ...+..++.++...|++++|...|+++.+.. +.+..++..++.++...|++++|+..|+
T Consensus       326 ~~~A~~~~~~a~~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~  402 (537)
T 3fp2_A          326 YKNAKEDFQKAQS--LNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYD  402 (537)
T ss_dssp             HHHHHHHHHHHHH--HCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHH
Confidence            9999999999998  6675 4789999999999999999999999999873 6677889999999999999999999999


Q ss_pred             HHHhCCccc-----CHHHHHHHHHHhhhh----------CCHHHHHHHHHHHHhcCCCCch-HHHHHHHHHHHhCCChhH
Q 000951          936 RMLRMRLVP-----TIATFTTLIHKFCKE----------AKFVDALKLKGTMELSGVKLDV-VSYNVLISGLCANGDVMP  999 (1211)
Q Consensus       936 ~~~~~~~~p-----~~~~~~~L~~~~~~~----------g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~  999 (1211)
                      ++++..+..     ....+..++.++...          |++++|+..|+.....  .|+. ..+..++.+|...|++++
T Consensus       403 ~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~l~~~~~~~g~~~~  480 (537)
T 3fp2_A          403 IAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACEL--DPRSEQAKIGLAQLKLQMEKIDE  480 (537)
T ss_dssp             HHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhccHHH
Confidence            999865432     123356667888888          9999999999987766  6754 588999999999999999


Q ss_pred             HHHHHHHHHHc
Q 000951         1000 AFELYEEMKHK 1010 (1211)
Q Consensus      1000 a~~~~~~~~~~ 1010 (1211)
                      |.+.+++..+.
T Consensus       481 A~~~~~~al~~  491 (537)
T 3fp2_A          481 AIELFEDSAIL  491 (537)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHh
Confidence            99999998773

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.87  E-value=5.1e-19  Score=202.18  Aligned_cols=338  Identities=13%  Similarity=0.024  Sum_probs=155.6

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Q 000951          595 TVAYNTILAETCKSGNLWEAIVLLDEMVQFNLLPDRYTYTILLAGLCRKGKVVSALLFFEKVVSKRTFSPNNVMFTCLVD  674 (1211)
Q Consensus       595 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~  674 (1211)
                      +..+..++..+...|++++|+..|+++++.. +.+...+..+...+...|++++|+..|+++++..  +.+...+..+..
T Consensus         3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~   79 (359)
T 3ieg_A            3 VEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK--MDFTAARLQRGH   79 (359)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCcchHHHHHHH
Confidence            3444555555555555555555555555432 2234445555555555555555555555555432  223344444555


Q ss_pred             HHHHcCCHHHHHHHHHHHHhCCCCC----CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC
Q 000951          675 GLFKAGQSKAAMHISKIMDKEGVYP----DTIAFNAVMDGFSRMGNMMMANDLLSTMRSRKLCPSLATYNILLHGYSKKK  750 (1211)
Q Consensus       675 ~~~~~g~~~~A~~~~~~~~~~g~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g  750 (1211)
                      .+...|++++|...++.+.+.  .|    +...+..+...+.                       ...+..++..+...|
T Consensus        80 ~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~-----------------------~~~~~~~a~~~~~~~  134 (359)
T 3ieg_A           80 LLLKQGKLDEAEDDFKKVLKS--NPSEQEEKEAESQLVKADE-----------------------MQRLRSQALDAFDGA  134 (359)
T ss_dssp             HHHHHTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHTT
T ss_pred             HHHHcCChHHHHHHHHHHHhc--CCcccChHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHcc
Confidence            555555555555555555433  22    1111111110000                       011122234444445


Q ss_pred             ChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCcHHHHHHHH
Q 000951          751 DLLMCSMLLNTMKMEGLLP-DKLTCHSLILGFCETGMLEVGFKFLKKMIAEGTMVDCFTFNVLMRKCCEAGEMGKAFDLF  829 (1211)
Q Consensus       751 ~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~  829 (1211)
                      ++++|+..++++.+.  .| +...+..++..+...|++++|+..++++++.. +.+..++..++.+|...|++++|.+.|
T Consensus       135 ~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~  211 (359)
T 3ieg_A          135 DYTAAITFLDKILEV--CVWDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEV  211 (359)
T ss_dssp             CHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHh--CCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            555555555554442  22 33334444444444455555555444444421 223344444444444444444444444


Q ss_pred             HHHHHCCCCCChhhHHHHHHHHHhhcchhhHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCC
Q 000951          830 NIMNMLGVVPDTNTQDAIIMGLKRIAAFQESHFVLRGMAEKGLTPKCTQYITLINGMCRVGNFQGAFKLKDEMEALGISS  909 (1211)
Q Consensus       830 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~  909 (1211)
                      +++.+.. +.+...+..+...                 .      .......++..+...|++++|...|+++.+.. +.
T Consensus       212 ~~a~~~~-~~~~~~~~~~~~~-----------------~------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~  266 (359)
T 3ieg_A          212 RECLKLD-QDHKRCFAHYKQV-----------------K------KLNKLIESAEELIRDGRYTDATSKYESVMKTE-PS  266 (359)
T ss_dssp             HHHHHHC-TTCHHHHHHHHHH-----------------H------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CS
T ss_pred             HHHHhhC-ccchHHHHHHHHH-----------------H------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CC
Confidence            4444321 1111111110000                 0      00011233555666666666666666665542 22


Q ss_pred             chH----HHHHHHHHHHhcCCHHHHHHHHHHHHhCCcccCHHHHHHHHHHhhhhCCHHHHHHHHHHHHhcCCCCchH-HH
Q 000951          910 SDV----AESAMVRGLAHCGKVEEAMLVLNRMLRMRLVPTIATFTTLIHKFCKEAKFVDALKLKGTMELSGVKLDVV-SY  984 (1211)
Q Consensus       910 ~~~----~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~p~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-~~  984 (1211)
                      +..    .+..++.++...|++++|++.|+++++..|. ++.+|..++.++...|++++|...|+.....  .|+.. .+
T Consensus       267 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~  343 (359)
T 3ieg_A          267 VAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPD-NVNALKDRAEAYLIEEMYDEAIQDYEAAQEH--NENDQQIR  343 (359)
T ss_dssp             SHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CTTCHHHH
T ss_pred             chHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCChHHH
Confidence            221    2334566666666666666666666665543 5666666666666666666666666655443  55433 44


Q ss_pred             HHHHHHH
Q 000951          985 NVLISGL  991 (1211)
Q Consensus       985 ~~l~~~~  991 (1211)
                      ..+..++
T Consensus       344 ~~l~~~~  350 (359)
T 3ieg_A          344 EGLEKAQ  350 (359)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            4444443

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.87  E-value=5.7e-19  Score=201.77  Aligned_cols=207  Identities=12%  Similarity=0.088  Sum_probs=138.7

Q ss_pred             HHHHHhcCcHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhcchhhHHHHHHHHHHcCCCCC-hhHHHHHHHHHHhcCC
Q 000951          813 MRKCCEAGEMGKAFDLFNIMNMLGVVPDTNTQDAIIMGLKRIAAFQESHFVLRGMAEKGLTPK-CTQYITLINGMCRVGN  891 (1211)
Q Consensus       813 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~  891 (1211)
                      +..+...|++++|++.|+++.+.. +.+...+..++..|...|++++|+..++++++  ..|+ ..++..++.++...|+
T Consensus       127 a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~la~~~~~~~~  203 (359)
T 3ieg_A          127 ALDAFDGADYTAAITFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASK--LKSDNTEAFYKISTLYYQLGD  203 (359)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TCSCCHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHccCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCC
Confidence            344555555555555555554432 22344555555555555555555555555554  4443 3455555555555555


Q ss_pred             hhhHHHHHHHHHHcCCCCchHHH------------HHHHHHHHhcCCHHHHHHHHHHHHhCCcccCH----HHHHHHHHH
Q 000951          892 FQGAFKLKDEMEALGISSSDVAE------------SAMVRGLAHCGKVEEAMLVLNRMLRMRLVPTI----ATFTTLIHK  955 (1211)
Q Consensus       892 ~~eA~~~~~~~~~~~~~~~~~~~------------~~l~~~~~~~g~~~eA~~~~~~~~~~~~~p~~----~~~~~L~~~  955 (1211)
                      +++|...|+++.+.. +.+...+            ..++..+.+.|++++|+..++++++..+. +.    ..+..++.+
T Consensus       204 ~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~la~~  281 (359)
T 3ieg_A          204 HELSLSEVRECLKLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-VAEYTVRSKERICHC  281 (359)
T ss_dssp             HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhC-ccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHH
Confidence            555555555555442 2222222            23477899999999999999999997755 44    346679999


Q ss_pred             hhhhCCHHHHHHHHHHHHhcCCCCc-hHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCccCh-hhHHHHHHHHHh
Q 000951          956 FCKEAKFVDALKLKGTMELSGVKLD-VVSYNVLISGLCANGDVMPAFELYEEMKHKGLCPNS-TTYSVLIDAISK 1028 (1211)
Q Consensus       956 ~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~p~~-~~~~~l~~~~~~ 1028 (1211)
                      +...|++++|+..++.....  .|+ ...+..++.+|...|++++|.+.+++..+  +.|+. ..+..+......
T Consensus       282 ~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~--~~p~~~~~~~~l~~~~~~  352 (359)
T 3ieg_A          282 FSKDEKPVEAIRICSEVLQM--EPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQE--HNENDQQIREGLEKAQRL  352 (359)
T ss_dssp             HHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TCTTCHHHHHHHHHHHHH
T ss_pred             HHHccCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCChHHHHHHHHHHHH
Confidence            99999999999999987776  774 55889999999999999999999999976  56765 666666655443

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=99.87  E-value=4.6e-18  Score=202.97  Aligned_cols=351  Identities=14%  Similarity=0.071  Sum_probs=250.7

Q ss_pred             cHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----CCChHHHHHHHHHHHHcCCCCCC
Q 000951          594 DTVAYNTILAETCK----SGNLWEAIVLLDEMVQFNLLPDRYTYTILLAGLCR----KGKVVSALLFFEKVVSKRTFSPN  665 (1211)
Q Consensus       594 ~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~p~  665 (1211)
                      ++..+..+...|..    .+++++|+..|++..+.|   +...+..|...|..    .+++++|+..|+++.+.+    +
T Consensus        38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~----~  110 (490)
T 2xm6_A           38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG----L  110 (490)
T ss_dssp             CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT----C
T ss_pred             CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC----C
Confidence            55666666777766    677777777777777654   56666677777776    777777888777777643    4


Q ss_pred             HHHHHHHHHHHHH----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHHCCCCCCHH
Q 000951          666 NVMFTCLVDGLFK----AGQSKAAMHISKIMDKEGVYPDTIAFNAVMDGFSR----MGNMMMANDLLSTMRSRKLCPSLA  737 (1211)
Q Consensus       666 ~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~  737 (1211)
                      ...+..|...|..    .+++++|...|+...+.|   +...+..+...|..    .+++++|..+|++..+.+   +..
T Consensus       111 ~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~  184 (490)
T 2xm6_A          111 PQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVW  184 (490)
T ss_dssp             HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHH
T ss_pred             HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHH
Confidence            5556667777776    677778887777776654   45566667777766    677788888888777643   567


Q ss_pred             HHHHHHHHHHc----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCCCHhhH
Q 000951          738 TYNILLHGYSK----KKDLLMCSMLLNTMKMEGLLPDKLTCHSLILGFCE----TGMLEVGFKFLKKMIAEGTMVDCFTF  809 (1211)
Q Consensus       738 ~~~~l~~~~~~----~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~  809 (1211)
                      ++..|+..|..    .+++++|+..|++..+.|   +..++..+...|..    .+++++|+..++++.+.+   +...+
T Consensus       185 a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~  258 (490)
T 2xm6_A          185 SCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQ  258 (490)
T ss_dssp             HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHH
T ss_pred             HHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHH
Confidence            77777777776    777888888888777643   45566667777665    677888888888777643   44566


Q ss_pred             HHHHHHHHh----cCcHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhh-----cchhhHHHHHHHHHHcCCCCChhHHH
Q 000951          810 NVLMRKCCE----AGEMGKAFDLFNIMNMLGVVPDTNTQDAIIMGLKRI-----AAFQESHFVLRGMAEKGLTPKCTQYI  880 (1211)
Q Consensus       810 ~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----g~~~eA~~~~~~~~~~g~~p~~~~~~  880 (1211)
                      ..++.+|..    .+++++|+++|+++.+.   .+...+..++..|...     +++++|+.+|+++.+.|   +..++.
T Consensus       259 ~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~---~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~  332 (490)
T 2xm6_A          259 FRLGYILEQGLAGAKEPLKALEWYRKSAEQ---GNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQA  332 (490)
T ss_dssp             HHHHHHHHHTTTSSCCHHHHHHHHHHHHTT---TCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred             HHHHHHHHCCCCCCCCHHHHHHHHHHHHHc---CCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHH
Confidence            677777776    77788888888877753   3456677777777766     77888888888877732   345667


Q ss_pred             HHHHHHHhcC---ChhhHHHHHHHHHHcCCCCchHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCcccCHHHHHHHH
Q 000951          881 TLINGMCRVG---NFQGAFKLKDEMEALGISSSDVAESAMVRGLAH----CGKVEEAMLVLNRMLRMRLVPTIATFTTLI  953 (1211)
Q Consensus       881 ~l~~~~~~~g---~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~eA~~~~~~~~~~~~~p~~~~~~~L~  953 (1211)
                      .++..|...|   ++++|+++|+++.+.+   ++.++..++.+|..    .+++++|+..|+++.+.+   ++.++..|+
T Consensus       333 ~lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~Lg  406 (490)
T 2xm6_A          333 NLGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG---LSAAQVQLG  406 (490)
T ss_dssp             HHHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred             HHHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC---CHHHHHHHH
Confidence            7777777655   6778888888877653   46677777777777    677888888888887764   566777788


Q ss_pred             HHhhh----hCCHHHHHHHHHHHHhc
Q 000951          954 HKFCK----EAKFVDALKLKGTMELS  975 (1211)
Q Consensus       954 ~~~~~----~g~~~~A~~~~~~~~~~  975 (1211)
                      .+|..    .+++++|...|+...+.
T Consensus       407 ~~y~~g~g~~~d~~~A~~~~~~A~~~  432 (490)
T 2xm6_A          407 EIYYYGLGVERDYVQAWAWFDTASTN  432 (490)
T ss_dssp             HHHHHTSSSCCCHHHHHHHHHHHHHH
T ss_pred             HHHHcCCCCCCCHHHHHHHHHHHHHC
Confidence            87777    77888888887776665

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=99.86  E-value=1.2e-17  Score=199.38  Aligned_cols=369  Identities=12%  Similarity=0.005  Sum_probs=289.1

Q ss_pred             CHHHHHHHHHHHHc----CCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhCCCCCCH
Q 000951          559 SIFTYGSLLKGLCK----GGNLKEAKRFLNSLHHIPSAVDTVAYNTILAETCK----SGNLWEAIVLLDEMVQFNLLPDR  630 (1211)
Q Consensus       559 ~~~~~~~ll~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~  630 (1211)
                      +...+..+...|..    .+++++|...|....+.+   ++..+..|...|..    .+++++|+..|++..+.|   +.
T Consensus        38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~  111 (490)
T 2xm6_A           38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LP  111 (490)
T ss_dssp             CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CH
T ss_pred             CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CH
Confidence            44455555555555    567777777777766653   45667777777777    778888888888887764   56


Q ss_pred             HHHHHHHHHHHh----CCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhCCCCCCHH
Q 000951          631 YTYTILLAGLCR----KGKVVSALLFFEKVVSKRTFSPNNVMFTCLVDGLFK----AGQSKAAMHISKIMDKEGVYPDTI  702 (1211)
Q Consensus       631 ~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~g~~~~~~  702 (1211)
                      ..+..|...|..    .+++++|+..|+++.+.+    +...+..|...|..    .+++++|.+.|+...+.|   +..
T Consensus       112 ~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~----~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~  184 (490)
T 2xm6_A          112 QAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG----RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVW  184 (490)
T ss_dssp             HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHH
T ss_pred             HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC----CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHH
Confidence            667777777777    778888888888887754    45667777777777    778888888888887764   567


Q ss_pred             HHHHHHHHHHh----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc----cCChHHHHHHHHHHHHCCCCCCHHHH
Q 000951          703 AFNAVMDGFSR----MGNMMMANDLLSTMRSRKLCPSLATYNILLHGYSK----KKDLLMCSMLLNTMKMEGLLPDKLTC  774 (1211)
Q Consensus       703 ~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~g~~p~~~~~  774 (1211)
                      .+..+...|..    .+++++|..+|++..+.+   +..++..++..|..    .+++++|+..|++..+.|   +...+
T Consensus       185 a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~  258 (490)
T 2xm6_A          185 SCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQ  258 (490)
T ss_dssp             HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHH
T ss_pred             HHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHH
Confidence            77778888877    788899999998888653   66778888888876    788999999999988753   45566


Q ss_pred             HHHHHHHHh----cCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhc-----CcHHHHHHHHHHHHHCCCCCChhhHH
Q 000951          775 HSLILGFCE----TGMLEVGFKFLKKMIAEGTMVDCFTFNVLMRKCCEA-----GEMGKAFDLFNIMNMLGVVPDTNTQD  845 (1211)
Q Consensus       775 ~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----g~~~~A~~~~~~~~~~~~~~~~~~~~  845 (1211)
                      ..+...|..    .+++++|+..|+++.+.+   +...+..|+.+|...     +++++|++.|+++.+.+   +...+.
T Consensus       259 ~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~  332 (490)
T 2xm6_A          259 FRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQA  332 (490)
T ss_dssp             HHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred             HHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHH
Confidence            667777877    889999999999988753   456778888888887     89999999999998753   567888


Q ss_pred             HHHHHHHhhc---chhhHHHHHHHHHHcCCCCChhHHHHHHHHHHh----cCChhhHHHHHHHHHHcCCCCchHHHHHHH
Q 000951          846 AIIMGLKRIA---AFQESHFVLRGMAEKGLTPKCTQYITLINGMCR----VGNFQGAFKLKDEMEALGISSSDVAESAMV  918 (1211)
Q Consensus       846 ~l~~~~~~~g---~~~eA~~~~~~~~~~g~~p~~~~~~~l~~~~~~----~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~  918 (1211)
                      .++..|...|   ++++|+.+|+++.+.   .+...+..++.+|..    .+++++|...|+++.+.+   ++.++..++
T Consensus       333 ~lg~~y~~~g~~~~~~~A~~~~~~a~~~---~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~Lg  406 (490)
T 2xm6_A          333 NLGAIYFRLGSEEEHKKAVEWFRKAAAK---GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG---LSAAQVQLG  406 (490)
T ss_dssp             HHHHHHHHSCCHHHHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred             HHHHHHHhCCCcccHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC---CHHHHHHHH
Confidence            8998888755   889999999999984   356788899999998    899999999999998865   477888999


Q ss_pred             HHHHh----cCCHHHHHHHHHHHHhCCcc-c-CHHHHHHHHHHhhh
Q 000951          919 RGLAH----CGKVEEAMLVLNRMLRMRLV-P-TIATFTTLIHKFCK  958 (1211)
Q Consensus       919 ~~~~~----~g~~~eA~~~~~~~~~~~~~-p-~~~~~~~L~~~~~~  958 (1211)
                      .+|..    .+++++|...|+++++.++. | ++.++..|+.++..
T Consensus       407 ~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~~a~~~l~~~~~~  452 (490)
T 2xm6_A          407 EIYYYGLGVERDYVQAWAWFDTASTNDMNLFGTENRNITEKKLTAK  452 (490)
T ss_dssp             HHHHHTSSSCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHTTSCHH
T ss_pred             HHHHcCCCCCCCHHHHHHHHHHHHHCCCCCcCCHHHHHHHHhcCHh
Confidence            99988    89999999999999998743 2 56677777776554

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.84  E-value=6.9e-19  Score=198.48  Aligned_cols=286  Identities=11%  Similarity=-0.019  Sum_probs=175.7

Q ss_pred             CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCC-CHHHHHHH
Q 000951          700 DTIAFNAVMDGFSRMGNMMMANDLLSTMRSRKLCP-SLATYNILLHGYSKKKDLLMCSMLLNTMKMEGLLP-DKLTCHSL  777 (1211)
Q Consensus       700 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l  777 (1211)
                      +...+..++..+...|++++|..+|+++.+.  .| +...+..++.++...|++++|+..++++++.  .| +...+..+
T Consensus        21 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l   96 (330)
T 3hym_B           21 NLDVVVSLAERHYYNCDFKMCYKLTSVVMEK--DPFHASCLPVHIGTLVELNKANELFYLSHKLVDL--YPSNPVSWFAV   96 (330)
T ss_dssp             CCTTHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTSTHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHh--CcCCHHHHHHH
Confidence            3344455555566666666666666666543  23 4444555556666666666666666666652  33 34455556


Q ss_pred             HHHHHhcC-ChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhcc
Q 000951          778 ILGFCETG-MLEVGFKFLKKMIAEGTMVDCFTFNVLMRKCCEAGEMGKAFDLFNIMNMLGVVPDTNTQDAIIMGLKRIAA  856 (1211)
Q Consensus       778 ~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~  856 (1211)
                      +..+...| ++++|+..++++++.. +.+...+..++.+|...|++++|++.|+++.+.. +.+...+..++..|...|+
T Consensus        97 ~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~  174 (330)
T 3hym_B           97 GCYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNN  174 (330)
T ss_dssp             HHHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTC
T ss_pred             HHHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhh
Confidence            66666666 6666666666666532 2234556666666666677777777666666533 2234555666666667777


Q ss_pred             hhhHHHHHHHHHHcCCCCC-hhHHHHHHHHHHhcCChhhHHHHHHHHHHcC--------CCCchHHHHHHHHHHHhcCCH
Q 000951          857 FQESHFVLRGMAEKGLTPK-CTQYITLINGMCRVGNFQGAFKLKDEMEALG--------ISSSDVAESAMVRGLAHCGKV  927 (1211)
Q Consensus       857 ~~eA~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~g~~  927 (1211)
                      +++|+..|+++++  ..|+ ...+..++..+...|++++|...++++.+..        .+....++..++.++...|++
T Consensus       175 ~~~A~~~~~~al~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~  252 (330)
T 3hym_B          175 SKLAERFFSQALS--IAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKY  252 (330)
T ss_dssp             HHHHHHHHHHHHT--TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCH
Confidence            7777777777666  5554 3566667777777777777777777765431        133345666777777777777


Q ss_pred             HHHHHHHHHHHhCCcccCHHHHHHHHHHhhhhCCHHHHHHHHHHHHhcCCCCchH-HHHHHHHHH-HhCCC
Q 000951          928 EEAMLVLNRMLRMRLVPTIATFTTLIHKFCKEAKFVDALKLKGTMELSGVKLDVV-SYNVLISGL-CANGD  996 (1211)
Q Consensus       928 ~eA~~~~~~~~~~~~~p~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~-~~~g~  996 (1211)
                      ++|+..|+++++..+. +..+|..++.++...|++++|...|+....  +.|+.. .+..++.++ ...|+
T Consensus       253 ~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~~g~  320 (330)
T 3hym_B          253 AEALDYHRQALVLIPQ-NASTYSAIGYIHSLMGNFENAVDYFHTALG--LRRDDTFSVTMLGHCIEMYIGD  320 (330)
T ss_dssp             HHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHHTCHHHHHHHHHTTTT--TCSCCHHHHHHHHHHHHTTTTC
T ss_pred             HHHHHHHHHHHhhCcc-chHHHHHHHHHHHHhccHHHHHHHHHHHHc--cCCCchHHHHHHHHHHHHHhCc
Confidence            7777777777776544 666777777777777777777777664433  366433 666666665 34444

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.83  E-value=2.8e-18  Score=193.46  Aligned_cols=292  Identities=9%  Similarity=-0.053  Sum_probs=220.9

Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHH
Q 000951          663 SPNNVMFTCLVDGLFKAGQSKAAMHISKIMDKEGVYPDTIAFNAVMDGFSRMGNMMMANDLLSTMRSRKLCP-SLATYNI  741 (1211)
Q Consensus       663 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~  741 (1211)
                      +.+...+..++..+...|++++|.++++.+++.. +.+...+..++..+...|++++|...++++.+.  .| +...|..
T Consensus        19 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~   95 (330)
T 3hym_B           19 QENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDL--YPSNPVSWFA   95 (330)
T ss_dssp             -CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTSTHHHHH
T ss_pred             hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHh--CcCCHHHHHH
Confidence            3344556666677777777777777777776542 233445555666677777888888887777753  34 5677777


Q ss_pred             HHHHHHccC-ChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhc
Q 000951          742 LLHGYSKKK-DLLMCSMLLNTMKMEGLLP-DKLTCHSLILGFCETGMLEVGFKFLKKMIAEGTMVDCFTFNVLMRKCCEA  819 (1211)
Q Consensus       742 l~~~~~~~g-~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  819 (1211)
                      ++..+...| ++++|+..|+++++  ..| +...|..++..+...|++++|+..++++++.. +.+...+..++.+|...
T Consensus        96 l~~~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~  172 (330)
T 3hym_B           96 VGCYYLMVGHKNEHARRYLSKATT--LEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLT  172 (330)
T ss_dssp             HHHHHHHSCSCHHHHHHHHHHHHT--TCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHT
T ss_pred             HHHHHHHhhhhHHHHHHHHHHHHH--hCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHH
Confidence            888888888 78888888888876  344 44567777788888888888888888888753 22355666788888888


Q ss_pred             CcHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhcchhhHHHHHHHHHHcCC-------CC-ChhHHHHHHHHHHhcCC
Q 000951          820 GEMGKAFDLFNIMNMLGVVPDTNTQDAIIMGLKRIAAFQESHFVLRGMAEKGL-------TP-KCTQYITLINGMCRVGN  891 (1211)
Q Consensus       820 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~g~-------~p-~~~~~~~l~~~~~~~g~  891 (1211)
                      |++++|++.|+++.+.. +.+...+..++..|...|++++|+..|+++++...       .| ...++..++.++...|+
T Consensus       173 ~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~  251 (330)
T 3hym_B          173 NNSKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKK  251 (330)
T ss_dssp             TCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTC
T ss_pred             hhHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcC
Confidence            88888888888887643 34577788888888888888888888888886211       03 24788999999999999


Q ss_pred             hhhHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCcccCHHHHHHHHHHh-hhhCCHH
Q 000951          892 FQGAFKLKDEMEALGISSSDVAESAMVRGLAHCGKVEEAMLVLNRMLRMRLVPTIATFTTLIHKF-CKEAKFV  963 (1211)
Q Consensus       892 ~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~p~~~~~~~L~~~~-~~~g~~~  963 (1211)
                      +++|...|+++++.. +.+..++..++.++...|++++|.+.|+++++..|. +..++..++.++ ...|+.+
T Consensus       252 ~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~g~~~  322 (330)
T 3hym_B          252 YAEALDYHRQALVLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRD-DTFSVTMLGHCIEMYIGDSE  322 (330)
T ss_dssp             HHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSC-CHHHHHHHHHHHHTTTTC--
T ss_pred             HHHHHHHHHHHHhhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCC-chHHHHHHHHHHHHHhCchh
Confidence            999999999998774 667888999999999999999999999999998765 888999999988 5666654

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=99.82  E-value=9.3e-17  Score=193.76  Aligned_cols=131  Identities=9%  Similarity=0.007  Sum_probs=72.4

Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHH
Q 000951          524 NSITFDCMIDGYGTLGDGLKAFSMFDEMVKLGHHPSIFTYGSLLKGLCKGGNLKEAKRFLNSLHHIPSAVDTVAYNTILA  603 (1211)
Q Consensus       524 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~  603 (1211)
                      |..+|..++. +.+.|++++|..+|+++++. .+.+...|..++..+.+.|++++|..+|++++...|  +...|..++.
T Consensus        12 ~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~-~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p--~~~lw~~~~~   87 (530)
T 2ooe_A           12 DLDAWSILIR-EAQNQPIDKARKTYERLVAQ-FPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVL--HIDLWKCYLS   87 (530)
T ss_dssp             CHHHHHHHHH-HHHSSCHHHHHHHHHHHHTT-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCC--CHHHHHHHHH
T ss_pred             CHHHHHHHHH-HHHhCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC--ChHHHHHHHH
Confidence            5566776666 35667777777777777654 233455666666666666666777766666666543  4445555554


Q ss_pred             HH-HHcCCHHHHHH----HHHHHHhC-CCCC-CHHHHHHHHHHHHh---------CCChHHHHHHHHHHHH
Q 000951          604 ET-CKSGNLWEAIV----LLDEMVQF-NLLP-DRYTYTILLAGLCR---------KGKVVSALLFFEKVVS  658 (1211)
Q Consensus       604 ~~-~~~g~~~~A~~----~~~~m~~~-~~~p-~~~~~~~li~~~~~---------~g~~~~A~~~~~~~~~  658 (1211)
                      .. ...|+.++|.+    +|+..+.. |..| +...|...+.....         .|+++.|..+|+++++
T Consensus        88 ~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~  158 (530)
T 2ooe_A           88 YVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCV  158 (530)
T ss_dssp             HHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHh
Confidence            22 23455554443    55544432 3222 34445555544333         4555555566655555

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=99.81  E-value=1.2e-16  Score=192.65  Aligned_cols=420  Identities=8%  Similarity=-0.032  Sum_probs=250.6

Q ss_pred             CHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 000951          559 SIFTYGSLLKGLCKGGNLKEAKRFLNSLHHIPSAVDTVAYNTILAETCKSGNLWEAIVLLDEMVQFNLLPDRYTYTILLA  638 (1211)
Q Consensus       559 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~  638 (1211)
                      +...+..++. +...|++++|..+|+++++..|. +...|..++..+.+.|++++|..+|++++...  |+...|..++.
T Consensus        12 ~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~P~-~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~--p~~~lw~~~~~   87 (530)
T 2ooe_A           12 DLDAWSILIR-EAQNQPIDKARKTYERLVAQFPS-SGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV--LHIDLWKCYLS   87 (530)
T ss_dssp             CHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--CCHHHHHHHHH
T ss_pred             CHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CChHHHHHHHH
Confidence            5556666666 35567777777777777665543 56667777777777777777777777776642  56555655553


Q ss_pred             H-HHhCCChHHHHH----HHHHHHHcCCCCC-CHHHHHHHHHHHHH---------cCCHHHHHHHHHHHHhCCCCCCHHH
Q 000951          639 G-LCRKGKVVSALL----FFEKVVSKRTFSP-NNVMFTCLVDGLFK---------AGQSKAAMHISKIMDKEGVYPDTIA  703 (1211)
Q Consensus       639 ~-~~~~g~~~~A~~----~~~~~~~~~~~~p-~~~~~~~l~~~~~~---------~g~~~~A~~~~~~~~~~g~~~~~~~  703 (1211)
                      . ....|+.++|.+    +|++++..-+..| +...|...+.....         .|+++.|..+|+.+++....+....
T Consensus        88 ~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~~  167 (530)
T 2ooe_A           88 YVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQL  167 (530)
T ss_dssp             HHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHHH
T ss_pred             HHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHHH
Confidence            2 234555555543    5555554321222 34455555554433         4556666666666655211111122


Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHH------HHCC---CCCC----
Q 000951          704 FNAVMDGFSRMGNMMMANDLLSTMRSRKLCPSLATYNILLHGYSKKKDLLMCSMLLNTM------KMEG---LLPD----  770 (1211)
Q Consensus       704 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~------~~~g---~~p~----  770 (1211)
                      |..........|. ..+.                   .++  ....+++..|..++.+.      .+..   +.|+    
T Consensus       168 ~~~~~~~e~~~~~-~~~~-------------------~~l--~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~  225 (530)
T 2ooe_A          168 WRDYNKYEEGINI-HLAK-------------------KMI--EDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQ  225 (530)
T ss_dssp             HHHHHHHHHHHCH-HHHH-------------------HHH--HTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CC
T ss_pred             HHHHHHHHHhhch-hHHH-------------------HHH--HHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChh
Confidence            2221111000000 0000                   000  01234556666655542      2211   2332    


Q ss_pred             ----HHHHHHHHHHHHhc----CCh----HHHHHHHHHHHHcCCCCCHhhHHHHHHHHHh-------cCcHH-------H
Q 000951          771 ----KLTCHSLILGFCET----GML----EVGFKFLKKMIAEGTMVDCFTFNVLMRKCCE-------AGEMG-------K  824 (1211)
Q Consensus       771 ----~~~~~~l~~~~~~~----g~~----~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~g~~~-------~  824 (1211)
                          ...|...+......    ++.    ..+..+|++++.. .+.+...|..++..+.+       .|+++       +
T Consensus       226 ~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~-~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~  304 (530)
T 2ooe_A          226 EAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLV-LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDE  304 (530)
T ss_dssp             HHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHH
Confidence                12343333222111    222    3677788888775 23356677777777665       67776       8


Q ss_pred             HHHHHHHHHHCCCCCChhhHHHHHHHHHhhcchhhHHHHHHHHHHcCCCCCh--hHHHHHHHHHHhcCChhhHHHHHHHH
Q 000951          825 AFDLFNIMNMLGVVPDTNTQDAIIMGLKRIAAFQESHFVLRGMAEKGLTPKC--TQYITLINGMCRVGNFQGAFKLKDEM  902 (1211)
Q Consensus       825 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~g~~p~~--~~~~~l~~~~~~~g~~~eA~~~~~~~  902 (1211)
                      |+++|+++++.-.+.+...|..++..+.+.|++++|..+|+++++  +.|+.  ..|...+..+.+.|++++|.++|+++
T Consensus       305 A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~A  382 (530)
T 2ooe_A          305 AANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLA--IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKA  382 (530)
T ss_dssp             HHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--SSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhC--ccccCchHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence            888888887521233477788888888888888888888888888  66753  46778888888888888888888888


Q ss_pred             HHcCCCCchHHHHHHHHH-HHhcCCHHHHHHHHHHHHhCCcccCHHHHHHHHHHhhhhCCHHHHHHHHHHHHhcC-CCCc
Q 000951          903 EALGISSSDVAESAMVRG-LAHCGKVEEAMLVLNRMLRMRLVPTIATFTTLIHKFCKEAKFVDALKLKGTMELSG-VKLD  980 (1211)
Q Consensus       903 ~~~~~~~~~~~~~~l~~~-~~~~g~~~eA~~~~~~~~~~~~~p~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~-~~p~  980 (1211)
                      ++.. +.+...+...+.+ +...|++++|..+|+++++..|. ++..|..++..+.+.|++++|..+|+...... ..|+
T Consensus       383 l~~~-~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~-~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~  460 (530)
T 2ooe_A          383 REDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGD-IPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPE  460 (530)
T ss_dssp             HTCT-TCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGG
T ss_pred             Hhcc-CCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCC-CHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHH
Confidence            7652 2333444433333 33578888888888888887654 77888888888888888888888888766552 2332


Q ss_pred             --hHHHHHHHHHHHhCCChhHHHHHHHHHHH
Q 000951          981 --VVSYNVLISGLCANGDVMPAFELYEEMKH 1009 (1211)
Q Consensus       981 --~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 1009 (1211)
                        ...|...+......|+.+.+.++.+++.+
T Consensus       461 ~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~  491 (530)
T 2ooe_A          461 KSGEIWARFLAFESNIGDLASILKVEKRRFT  491 (530)
T ss_dssp             GCHHHHHHHHHHHHHSSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence              12566666667778888888888887765

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.81  E-value=2.3e-18  Score=197.64  Aligned_cols=284  Identities=11%  Similarity=-0.053  Sum_probs=203.2

Q ss_pred             hcCChHHHHH-HHHHHHHCCC-CC--CHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCh
Q 000951          713 RMGNMMMAND-LLSTMRSRKL-CP--SLATYNILLHGYSKKKDLLMCSMLLNTMKMEGLLP-DKLTCHSLILGFCETGML  787 (1211)
Q Consensus       713 ~~g~~~~A~~-~~~~~~~~~~-~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~  787 (1211)
                      ..|++++|.. .|++...... .|  +...+..++..+.+.|++++|+..|+++++.  .| +..++..++.+|...|++
T Consensus        37 ~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~  114 (368)
T 1fch_A           37 WLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQ--DPKHMEAWQYLGTTQAENEQE  114 (368)
T ss_dssp             ---------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHS--CTTCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCcCH
Confidence            3466666666 6655442211 11  2345666777777777777777777777763  34 445666666777777777


Q ss_pred             HHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHHHHHCCCCCChhhHH----------------HHHHHH
Q 000951          788 EVGFKFLKKMIAEGTMVDCFTFNVLMRKCCEAGEMGKAFDLFNIMNMLGVVPDTNTQD----------------AIIMGL  851 (1211)
Q Consensus       788 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~----------------~l~~~~  851 (1211)
                      ++|+..++++++.. +.+..++..++.+|...|++++|++.|+++.+.... +...+.                .+...+
T Consensus       115 ~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  192 (368)
T 1fch_A          115 LLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPA-YAHLVTPAEEGAGGAGLGPSKRILGSLL  192 (368)
T ss_dssp             HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT-TGGGCC---------------CTTHHHH
T ss_pred             HHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHhhhhcccHHHHHHHHHh
Confidence            77777777777643 234566777777777777777777777777664321 122221                344444


Q ss_pred             HhhcchhhHHHHHHHHHHcCCCCC---hhHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHH
Q 000951          852 KRIAAFQESHFVLRGMAEKGLTPK---CTQYITLINGMCRVGNFQGAFKLKDEMEALGISSSDVAESAMVRGLAHCGKVE  928 (1211)
Q Consensus       852 ~~~g~~~eA~~~~~~~~~~g~~p~---~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~  928 (1211)
                       ..|++++|+..|+++++  ..|+   ..++..++.++...|++++|+..|+++++.. +.+..++..++.++...|+++
T Consensus       193 -~~~~~~~A~~~~~~a~~--~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~  268 (368)
T 1fch_A          193 -SDSLFLEVKELFLAAVR--LDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSE  268 (368)
T ss_dssp             -HHHHHHHHHHHHHHHHH--HSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred             -hcccHHHHHHHHHHHHH--hCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCCHH
Confidence             88999999999999998  5565   5788889999999999999999999998763 566788899999999999999


Q ss_pred             HHHHHHHHHHhCCcccCHHHHHHHHHHhhhhCCHHHHHHHHHHHHhcCCCCc------------hHHHHHHHHHHHhCCC
Q 000951          929 EAMLVLNRMLRMRLVPTIATFTTLIHKFCKEAKFVDALKLKGTMELSGVKLD------------VVSYNVLISGLCANGD  996 (1211)
Q Consensus       929 eA~~~~~~~~~~~~~p~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~p~------------~~~~~~l~~~~~~~g~  996 (1211)
                      +|+..|+++++..|. +..+|..++.+|.+.|++++|+..|+.....  .|+            ..+|..++.+|...|+
T Consensus       269 ~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~  345 (368)
T 1fch_A          269 EAVAAYRRALELQPG-YIRSRYNLGISCINLGAHREAVEHFLEALNM--QRKSRGPRGEGGAMSENIWSTLRLALSMLGQ  345 (368)
T ss_dssp             HHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--HHTC------CCCCCHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHhCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCCCccccccchhhHHHHHHHHHHHHhCC
Confidence            999999999988755 7889999999999999999999998876654  453            3578899999999999


Q ss_pred             hhHHHHHHHHH
Q 000951          997 VMPAFELYEEM 1007 (1211)
Q Consensus       997 ~~~a~~~~~~~ 1007 (1211)
                      +++|..++++.
T Consensus       346 ~~~A~~~~~~~  356 (368)
T 1fch_A          346 SDAYGAADARD  356 (368)
T ss_dssp             GGGHHHHHTTC
T ss_pred             hHhHHHhHHHH
Confidence            99999887643

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=99.80  E-value=2.9e-17  Score=195.63  Aligned_cols=380  Identities=9%  Similarity=-0.084  Sum_probs=201.2

Q ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--------CCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCC----
Q 000951          594 DTVAYNTILAETCKSGNLWEAIVLLDEMVQF--------NLLPDRYTYTILLAGLCRKGKVVSALLFFEKVVSKRT----  661 (1211)
Q Consensus       594 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--------~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~----  661 (1211)
                      ....||.|+..+...|++++|++.|++.++.        ..+....+|..+...|...|++++|...|+++++...    
T Consensus        50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~  129 (472)
T 4g1t_A           50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSS  129 (472)
T ss_dssp             CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccc
Confidence            3456777777777777777777777766541        1112345566666666677777777766666654210    


Q ss_pred             -CCC-CHHHHHHHHHHHHHc--CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH---HhcCChHHHHHHHHHHHHCCCCC
Q 000951          662 -FSP-NNVMFTCLVDGLFKA--GQSKAAMHISKIMDKEGVYPDTIAFNAVMDGF---SRMGNMMMANDLLSTMRSRKLCP  734 (1211)
Q Consensus       662 -~~p-~~~~~~~l~~~~~~~--g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~---~~~g~~~~A~~~~~~~~~~~~~p  734 (1211)
                       ..+ ...++..+..++...  +++++|+..|+++++.. +.++..+..+..++   ...++.++|...+++..+.  .|
T Consensus       130 ~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~-p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l--~p  206 (472)
T 4g1t_A          130 PYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK-PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRL--NP  206 (472)
T ss_dssp             SSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHH--CS
T ss_pred             ccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhc--CC
Confidence             011 133444444444333  34566666666665442 22333333333332   2345555555555555532  33


Q ss_pred             -CHHHHHHHHHHHH----ccCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhh
Q 000951          735 -SLATYNILLHGYS----KKKDLLMCSMLLNTMKMEGLLP-DKLTCHSLILGFCETGMLEVGFKFLKKMIAEGTMVDCFT  808 (1211)
Q Consensus       735 -~~~~~~~l~~~~~----~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~  808 (1211)
                       +..++..++..+.    ..|++++|.+.++++...  .| +..++..++..|...|++++|+..++++++.. +.+..+
T Consensus       207 ~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~--~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~  283 (472)
T 4g1t_A          207 DNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEK--APGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNAYL  283 (472)
T ss_dssp             SCHHHHHHHHHHHHHCC------CHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHH
T ss_pred             cchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHh--CccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChHHH
Confidence             3444444443332    234555566666555552  23 33445555555666666666666666655531 123444


Q ss_pred             HHHHHHHHHhcCcHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhcchhhHHHHHHHHHHcCCCCCh-hHHHHHHHHHH
Q 000951          809 FNVLMRKCCEAGEMGKAFDLFNIMNMLGVVPDTNTQDAIIMGLKRIAAFQESHFVLRGMAEKGLTPKC-TQYITLINGMC  887 (1211)
Q Consensus       809 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~g~~p~~-~~~~~l~~~~~  887 (1211)
                      +..++.+|...+....+..                ...........+.+++|+..|+++.+  ..|+. .++..++.++.
T Consensus       284 ~~~lg~~y~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~lg~~~~  345 (472)
T 4g1t_A          284 HCQIGCCYRAKVFQVMNLR----------------ENGMYGKRKLLELIGHAVAHLKKADE--ANDNLFRVCSILASLHA  345 (472)
T ss_dssp             HHHHHHHHHHHHHHHHHC----------------------CHHHHHHHHHHHHHHHHHHHH--HCTTTCCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhhHH----------------HHHHHHHHHHHhhHHHHHHHHHHHhh--cCCchhhhhhhHHHHHH
Confidence            4555544432211111000                00011111223456788888888888  66754 77888999999


Q ss_pred             hcCChhhHHHHHHHHHHcCCCCchH--HHHHHHHH-HHhcCCHHHHHHHHHHHHhCCcccCHHHHHHHHHHhhhhCCHHH
Q 000951          888 RVGNFQGAFKLKDEMEALGISSSDV--AESAMVRG-LAHCGKVEEAMLVLNRMLRMRLVPTIATFTTLIHKFCKEAKFVD  964 (1211)
Q Consensus       888 ~~g~~~eA~~~~~~~~~~~~~~~~~--~~~~l~~~-~~~~g~~~eA~~~~~~~~~~~~~p~~~~~~~L~~~~~~~g~~~~  964 (1211)
                      ..|++++|+..|+++++...++...  .+..++.. +...|++++|+..|+++++..+. +. .+.         +....
T Consensus       346 ~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~-~~-~~~---------~~~~~  414 (472)
T 4g1t_A          346 LADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQK-SR-EKE---------KMKDK  414 (472)
T ss_dssp             HTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCC-CH-HHH---------HHHHH
T ss_pred             HhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcc-cH-HHH---------HHHHH
Confidence            9999999999999998764333322  33444443 45778899999999999987654 22 221         12233


Q ss_pred             HHHHHHHHHhcCCCCc-hHHHHHHHHHHHhCCChhHHHHHHHHHHHc
Q 000951          965 ALKLKGTMELSGVKLD-VVSYNVLISGLCANGDVMPAFELYEEMKHK 1010 (1211)
Q Consensus       965 A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 1010 (1211)
                      +..+++.....  .|+ ..+|+.++.+|...|++++|++.+++.++.
T Consensus       415 l~~~~~~~l~~--~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~  459 (472)
T 4g1t_A          415 LQKIAKMRLSK--NGADSEALHVLAFLQELNEKMQQADEDSERGLES  459 (472)
T ss_dssp             HHHHHHHHHHH--CC-CTTHHHHHHHHHHHHHHCC------------
T ss_pred             HHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence            34444433333  664 458899999999999999999999988774

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=99.80  E-value=7.3e-17  Score=192.13  Aligned_cols=379  Identities=10%  Similarity=-0.041  Sum_probs=260.6

Q ss_pred             CHHHHHHHHHHHHcCCCHHHHHHHHHHhhhC--------CCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-----C
Q 000951          559 SIFTYGSLLKGLCKGGNLKEAKRFLNSLHHI--------PSAVDTVAYNTILAETCKSGNLWEAIVLLDEMVQF-----N  625 (1211)
Q Consensus       559 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~--------~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----~  625 (1211)
                      ....|+.+...+...|++++|.+.|++.++.        .......+|+.+...|...|++++|...+++..+.     +
T Consensus        50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~  129 (472)
T 4g1t_A           50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSS  129 (472)
T ss_dssp             CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccc
Confidence            3567899999999999999999999988653        11224678999999999999999999999988752     1


Q ss_pred             -CC-CCHHHHHHHHHHHHh--CCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHH---HHHcCCHHHHHHHHHHHHhCCCC
Q 000951          626 -LL-PDRYTYTILLAGLCR--KGKVVSALLFFEKVVSKRTFSPNNVMFTCLVDG---LFKAGQSKAAMHISKIMDKEGVY  698 (1211)
Q Consensus       626 -~~-p~~~~~~~li~~~~~--~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~---~~~~g~~~~A~~~~~~~~~~g~~  698 (1211)
                       .. ....++..+..++..  .+++++|+..|+++++..  +.+...+..+..+   +...++.++|++.++++++.. +
T Consensus       130 ~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~--p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p  206 (472)
T 4g1t_A          130 PYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK--PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-P  206 (472)
T ss_dssp             SSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-S
T ss_pred             ccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-C
Confidence             11 134566666666655  457999999999999964  2235555555544   345678889999999998763 3


Q ss_pred             CCHHHHHHHHHHHHh----cCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCC-CHH
Q 000951          699 PDTIAFNAVMDGFSR----MGNMMMANDLLSTMRSRKLCP-SLATYNILLHGYSKKKDLLMCSMLLNTMKMEGLLP-DKL  772 (1211)
Q Consensus       699 ~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~  772 (1211)
                      .+..++..+...+..    .|++++|...+++....  .| +..++..++..|...|++++|+..|+++++  ..| +..
T Consensus       207 ~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~--~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~--~~p~~~~  282 (472)
T 4g1t_A          207 DNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEK--APGVTDVLRSAAKFYRRKDEPDKAIELLKKALE--YIPNNAY  282 (472)
T ss_dssp             SCHHHHHHHHHHHHHCC------CHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCHH
T ss_pred             cchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHh--CccHHHHHHHHHHHHHHcCchHHHHHHHHHHHH--hCCChHH
Confidence            455666666555544    56789999999999864  45 788899999999999999999999999998  456 455


Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHHHHHCCCCCChhhHHHHHHHHH
Q 000951          773 TCHSLILGFCETGMLEVGFKFLKKMIAEGTMVDCFTFNVLMRKCCEAGEMGKAFDLFNIMNMLGVVPDTNTQDAIIMGLK  852 (1211)
Q Consensus       773 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~  852 (1211)
                      ++..++.+|...+....+.                ............+.+++|+..|+++.+.. +.+..++..++..|.
T Consensus       283 ~~~~lg~~y~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~  345 (472)
T 4g1t_A          283 LHCQIGCCYRAKVFQVMNL----------------RENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHA  345 (472)
T ss_dssp             HHHHHHHHHHHHHHHHHHC----------------------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhhH----------------HHHHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHH
Confidence            6776776664322111110                01111112223345788899998887643 345778889999999


Q ss_pred             hhcchhhHHHHHHHHHHcCCCCCh----hHHHHHHHH-HHhcCChhhHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCH
Q 000951          853 RIAAFQESHFVLRGMAEKGLTPKC----TQYITLING-MCRVGNFQGAFKLKDEMEALGISSSDVAESAMVRGLAHCGKV  927 (1211)
Q Consensus       853 ~~g~~~eA~~~~~~~~~~g~~p~~----~~~~~l~~~-~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~  927 (1211)
                      ..|++++|+..|+++++  ..|+.    ..+..++.. ....|++++|+..|+++++.  .|+.....         +..
T Consensus       346 ~~~~~~~A~~~~~kaL~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i--~~~~~~~~---------~~~  412 (472)
T 4g1t_A          346 LADQYEEAEYYFQKEFS--KELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKI--NQKSREKE---------KMK  412 (472)
T ss_dssp             HTTCHHHHHHHHHHHHH--SCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHS--CCCCHHHH---------HHH
T ss_pred             HhccHHHHHHHHHHHHh--cCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CcccHHHH---------HHH
Confidence            99999999999999998  55543    234444443 45789999999999999876  33332221         223


Q ss_pred             HHHHHHHHHHHhCCcccCHHHHHHHHHHhhhhCCHHHHHHHHHHHHhc
Q 000951          928 EEAMLVLNRMLRMRLVPTIATFTTLIHKFCKEAKFVDALKLKGTMELS  975 (1211)
Q Consensus       928 ~eA~~~~~~~~~~~~~p~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~  975 (1211)
                      ..+.+++++.++.+|. ++.+|..||.+|...|++++|++.|+...+.
T Consensus       413 ~~l~~~~~~~l~~~p~-~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~  459 (472)
T 4g1t_A          413 DKLQKIAKMRLSKNGA-DSEALHVLAFLQELNEKMQQADEDSERGLES  459 (472)
T ss_dssp             HHHHHHHHHHHHHCC--CTTHHHHHHHHHHHHHHCC------------
T ss_pred             HHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence            4556777788887765 8889999999999999999999998866554

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.80  E-value=5e-18  Score=194.81  Aligned_cols=304  Identities=10%  Similarity=-0.035  Sum_probs=190.2

Q ss_pred             HHHhCCChHHHHH-HHHHHHHcCCCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 000951          639 GLCRKGKVVSALL-FFEKVVSKRTFSP--NNVMFTCLVDGLFKAGQSKAAMHISKIMDKEGVYPDTIAFNAVMDGFSRMG  715 (1211)
Q Consensus       639 ~~~~~g~~~~A~~-~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g  715 (1211)
                      .+...|++++|+. .|++.++..+..|  +...+..+...+...|++++|...++.+++.. +.+...+..+...|...|
T Consensus        34 ~~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g  112 (368)
T 1fch_A           34 AHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENE  112 (368)
T ss_dssp             ------------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTT
T ss_pred             hhHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCc
Confidence            3444556666665 5555544221111  12334455555555555555555555555442 233444555555555555


Q ss_pred             ChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHHhcCChHHHHHH
Q 000951          716 NMMMANDLLSTMRSRKLCP-SLATYNILLHGYSKKKDLLMCSMLLNTMKMEGLLPDKLT-CHSLILGFCETGMLEVGFKF  793 (1211)
Q Consensus       716 ~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~-~~~l~~~~~~~g~~~~A~~~  793 (1211)
                      ++++|...|+++.+.  .| +..++..++.+|...|++++|+..|+++++  ..|+... +..+...       .     
T Consensus       113 ~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~~~~~~~-------~-----  176 (368)
T 1fch_A          113 QELLAISALRRCLEL--KPDNQTALMALAVSFTNESLQRQACEILRDWLR--YTPAYAHLVTPAEEG-------A-----  176 (368)
T ss_dssp             CHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TSTTTGGGCC------------------
T ss_pred             CHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCcCcHHHHHHHHHH-------h-----
Confidence            555555555555432  22 444555555555555555555555555554  2232211 1100000       0     


Q ss_pred             HHHHHHcCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHHHHHCCCCC-ChhhHHHHHHHHHhhcchhhHHHHHHHHHHcCC
Q 000951          794 LKKMIAEGTMVDCFTFNVLMRKCCEAGEMGKAFDLFNIMNMLGVVP-DTNTQDAIIMGLKRIAAFQESHFVLRGMAEKGL  872 (1211)
Q Consensus       794 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~g~  872 (1211)
                        ..    ..+ ...+..+...+ ..|++++|++.|+++.+..... +..++..++..|...|++++|+..|+++++  .
T Consensus       177 --~~----~~~-~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~--~  246 (368)
T 1fch_A          177 --GG----AGL-GPSKRILGSLL-SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALS--V  246 (368)
T ss_dssp             ----------------CTTHHHH-HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--H
T ss_pred             --hh----hcc-cHHHHHHHHHh-hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--h
Confidence              00    000 00111233444 8899999999999998754221 478889999999999999999999999998  6


Q ss_pred             CCC-hhHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCccc-------
Q 000951          873 TPK-CTQYITLINGMCRVGNFQGAFKLKDEMEALGISSSDVAESAMVRGLAHCGKVEEAMLVLNRMLRMRLVP-------  944 (1211)
Q Consensus       873 ~p~-~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~p-------  944 (1211)
                      .|+ ..++..++.++...|++++|+..|+++++.. +.+..++..++.+|.+.|++++|+..|+++++..|..       
T Consensus       247 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  325 (368)
T 1fch_A          247 RPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEG  325 (368)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------C
T ss_pred             CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccc
Confidence            775 5789999999999999999999999998773 6678889999999999999999999999999876542       


Q ss_pred             ---CHHHHHHHHHHhhhhCCHHHHHHHHH
Q 000951          945 ---TIATFTTLIHKFCKEAKFVDALKLKG  970 (1211)
Q Consensus       945 ---~~~~~~~L~~~~~~~g~~~~A~~~~~  970 (1211)
                         ...+|..++.+|...|++++|..+++
T Consensus       326 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~  354 (368)
T 1fch_A          326 GAMSENIWSTLRLALSMLGQSDAYGAADA  354 (368)
T ss_dssp             CCCCHHHHHHHHHHHHHHTCGGGHHHHHT
T ss_pred             cchhhHHHHHHHHHHHHhCChHhHHHhHH
Confidence               17899999999999999999999865

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.79  E-value=6.2e-18  Score=193.74  Aligned_cols=260  Identities=11%  Similarity=-0.041  Sum_probs=181.6

Q ss_pred             HHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHH
Q 000951          736 LATYNILLHGYSKKKDLLMCSMLLNTMKMEGLLP-DKLTCHSLILGFCETGMLEVGFKFLKKMIAEGTMVDCFTFNVLMR  814 (1211)
Q Consensus       736 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~  814 (1211)
                      ...|..++..+.+.|++++|+..|+++++.  .| +..++..++.+|...|++++|+..++++++.. +.+..++..++.
T Consensus        65 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~  141 (365)
T 4eqf_A           65 WPGAFEEGLKRLKEGDLPVTILFMEAAILQ--DPGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAV  141 (365)
T ss_dssp             CTTHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence            344666666677777777777777776663  33 45566666677777777777777777776642 223566667777


Q ss_pred             HHHhcCcHHHHHHHHHHHHHCCCCCC-hhh----------HHHHHHHHHhhcchhhHHHHHHHHHHcCCCCC---hhHHH
Q 000951          815 KCCEAGEMGKAFDLFNIMNMLGVVPD-TNT----------QDAIIMGLKRIAAFQESHFVLRGMAEKGLTPK---CTQYI  880 (1211)
Q Consensus       815 ~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~----------~~~l~~~~~~~g~~~eA~~~~~~~~~~g~~p~---~~~~~  880 (1211)
                      +|...|++++|++.|+++.+..  |+ ...          +..++..|...|++++|+..|+++++  ..|+   ..++.
T Consensus       142 ~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~~  217 (365)
T 4eqf_A          142 SYTNTSHQQDACEALKNWIKQN--PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAH--QNGDMIDPDLQT  217 (365)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHC--HHHHCC-------------------CCHHHHHHHHHHHHHHH--HSCSSCCHHHHH
T ss_pred             HHHccccHHHHHHHHHHHHHhC--ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHH--hCcCccCHHHHH
Confidence            7777777777777777766532  22 222          23447778888888888888888887  4554   57788


Q ss_pred             HHHHHHHhcCChhhHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCcccCHHHHHHHHHHhhhhC
Q 000951          881 TLINGMCRVGNFQGAFKLKDEMEALGISSSDVAESAMVRGLAHCGKVEEAMLVLNRMLRMRLVPTIATFTTLIHKFCKEA  960 (1211)
Q Consensus       881 ~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~p~~~~~~~L~~~~~~~g  960 (1211)
                      .++.++...|++++|+..|+++++.. +.+..+|..++.+|...|++++|+..|+++++..|. +..+|..++.+|...|
T Consensus       218 ~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g  295 (365)
T 4eqf_A          218 GLGVLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPG-FIRSRYNLGISCINLG  295 (365)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHCC
Confidence            88888888888888888888888763 566778888888888888888888888888887655 6788888888888888


Q ss_pred             CHHHHHHHHHHHHhcCCCCc-------------hHHHHHHHHHHHhCCChhHHHHHHHH
Q 000951          961 KFVDALKLKGTMELSGVKLD-------------VVSYNVLISGLCANGDVMPAFELYEE 1006 (1211)
Q Consensus       961 ~~~~A~~~~~~~~~~~~~p~-------------~~~~~~l~~~~~~~g~~~~a~~~~~~ 1006 (1211)
                      ++++|+..|+.....  .|+             ...|..++.++...|+.+.+.++.+.
T Consensus       296 ~~~~A~~~~~~al~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~  352 (365)
T 4eqf_A          296 AYREAVSNFLTALSL--QRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG  352 (365)
T ss_dssp             CCHHHHHHHHHHHHH--HHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred             CHHHHHHHHHHHHHh--CcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence            888888888766654  443             34678888888888888887776543

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.77  E-value=2.7e-17  Score=188.38  Aligned_cols=258  Identities=9%  Similarity=-0.021  Sum_probs=176.7

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHH
Q 000951          704 FNAVMDGFSRMGNMMMANDLLSTMRSRKLCP-SLATYNILLHGYSKKKDLLMCSMLLNTMKMEGLLP-DKLTCHSLILGF  781 (1211)
Q Consensus       704 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~  781 (1211)
                      +..+...+.+.|++++|...|+++.+.  .| +..+|..++.+|...|++++|+..|+++++.  .| +..++..++.+|
T Consensus        68 ~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~  143 (365)
T 4eqf_A           68 AFEEGLKRLKEGDLPVTILFMEAAILQ--DPGDAEAWQFLGITQAENENEQAAIVALQRCLEL--QPNNLKALMALAVSY  143 (365)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHH
Confidence            444444455555555555555555432  22 4555555555555556666666666555552  23 344555555666


Q ss_pred             HhcCChHHHHHHHHHHHHcCCCCC-----------HhhHHHHHHHHHhcCcHHHHHHHHHHHHHCCCCC-ChhhHHHHHH
Q 000951          782 CETGMLEVGFKFLKKMIAEGTMVD-----------CFTFNVLMRKCCEAGEMGKAFDLFNIMNMLGVVP-DTNTQDAIIM  849 (1211)
Q Consensus       782 ~~~g~~~~A~~~~~~~~~~~~~~~-----------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~  849 (1211)
                      ...|++++|+..++++++.  .|+           ...+..++.+|...|++++|++.|+++.+..... +..+|..++.
T Consensus       144 ~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~  221 (365)
T 4eqf_A          144 TNTSHQQDACEALKNWIKQ--NPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGV  221 (365)
T ss_dssp             HHTTCHHHHHHHHHHHHHH--CHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHH
T ss_pred             HccccHHHHHHHHHHHHHh--CccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHH
Confidence            6666666666666666553  121           1233445778888889999999998888754221 5778888999


Q ss_pred             HHHhhcchhhHHHHHHHHHHcCCCCC-hhHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHH
Q 000951          850 GLKRIAAFQESHFVLRGMAEKGLTPK-CTQYITLINGMCRVGNFQGAFKLKDEMEALGISSSDVAESAMVRGLAHCGKVE  928 (1211)
Q Consensus       850 ~~~~~g~~~eA~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~  928 (1211)
                      .|...|++++|+..|+++++  ..|+ ..++..++.++...|++++|+..|+++++.. +.+..++..++.+|...|+++
T Consensus       222 ~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~  298 (365)
T 4eqf_A          222 LFHLSGEFNRAIDAFNAALT--VRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ-PGFIRSRYNLGISCINLGAYR  298 (365)
T ss_dssp             HHHHHTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCH
T ss_pred             HHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHH
Confidence            99999999999999999988  6675 5788899999999999999999999998763 566888899999999999999


Q ss_pred             HHHHHHHHHHhCCccc-----------CHHHHHHHHHHhhhhCCHHHHHHHHH
Q 000951          929 EAMLVLNRMLRMRLVP-----------TIATFTTLIHKFCKEAKFVDALKLKG  970 (1211)
Q Consensus       929 eA~~~~~~~~~~~~~p-----------~~~~~~~L~~~~~~~g~~~~A~~~~~  970 (1211)
                      +|+..|+++++..|..           +..+|..|+.++...|+.+.|..+.+
T Consensus       299 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~  351 (365)
T 4eqf_A          299 EAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANL  351 (365)
T ss_dssp             HHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHT
T ss_pred             HHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence            9999999999865431           36789999999999999999988754

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=99.76  E-value=8.6e-18  Score=186.32  Aligned_cols=183  Identities=14%  Similarity=0.146  Sum_probs=34.0

Q ss_pred             HcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 000951          607 KSGNLWEAIVLLDEMVQFNLLPDRYTYTILLAGLCRKGKVVSALLFFEKVVSKRTFSPNNVMFTCLVDGLFKAGQSKAAM  686 (1211)
Q Consensus       607 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~  686 (1211)
                      +.|++++|.+.++++      ++...|..|+.++.+.|++++|++.|.+.       +|..+|..++..+...|++++|+
T Consensus        15 ~~~~ld~A~~fae~~------~~~~vWs~La~A~l~~g~~~eAIdsfika-------~D~~~y~~V~~~ae~~g~~EeAi   81 (449)
T 1b89_A           15 HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDSYIKA-------DDPSSYMEVVQAANTSGNWEELV   81 (449)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HccCHHHHHHHHHhC------CChHHHHHHHHHHHHcCCHHHHHHHHHcC-------CCHHHHHHHHHHHHhCCCHHHHH
Confidence            455566666655554      22335556666666666666666655331       34445555555555555555555


Q ss_pred             HHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCC
Q 000951          687 HISKIMDKEGVYPDTIAFNAVMDGFSRMGNMMMANDLLSTMRSRKLCPSLATYNILLHGYSKKKDLLMCSMLLNTMKMEG  766 (1211)
Q Consensus       687 ~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g  766 (1211)
                      .+++...+.  .+++.+.+.++.+|.+.|+++++.++++       .|+..+|+.++..|...|+|++|...|.++    
T Consensus        82 ~yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a----  148 (449)
T 1b89_A           82 KYLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV----  148 (449)
T ss_dssp             -----------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT----
T ss_pred             HHHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh----
Confidence            544444432  2334445555555555555555554442       133445555555555555555555555433    


Q ss_pred             CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCcHHHHH
Q 000951          767 LLPDKLTCHSLILGFCETGMLEVGFKFLKKMIAEGTMVDCFTFNVLMRKCCEAGEMGKAF  826 (1211)
Q Consensus       767 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~  826 (1211)
                           ..|..++.++.+.|++++|++.+.++      .++.+|..++.+|...|+++.|.
T Consensus       149 -----~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~  197 (449)
T 1b89_A          149 -----SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQ  197 (449)
T ss_dssp             -----TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             -----hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHH
Confidence                 13444444444555555554444444      13344444444444444444443

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.76  E-value=1.7e-16  Score=178.42  Aligned_cols=261  Identities=11%  Similarity=-0.010  Sum_probs=189.5

Q ss_pred             HHHHHHHHHHHccCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHH
Q 000951          737 ATYNILLHGYSKKKDLLMCSMLLNTMKMEGLLP-DKLTCHSLILGFCETGMLEVGFKFLKKMIAEGTMVDCFTFNVLMRK  815 (1211)
Q Consensus       737 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~  815 (1211)
                      ..+..++..+...|++++|+..|+++++.  .| +...+..++.++...|++++|+..++++++.. +.+..++..++.+
T Consensus        22 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~   98 (327)
T 3cv0_A           22 ENPMEEGLSMLKLANLAEAALAFEAVCQA--APEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVS   98 (327)
T ss_dssp             SCHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHH
Confidence            33455555666666666666666666553  23 44455555566666666666666666666542 2245556666666


Q ss_pred             HHhcCcHHHHHHHHHHHHHCCCCCChhhHHHH--------------HH-HHHhhcchhhHHHHHHHHHHcCCCCC-hhHH
Q 000951          816 CCEAGEMGKAFDLFNIMNMLGVVPDTNTQDAI--------------IM-GLKRIAAFQESHFVLRGMAEKGLTPK-CTQY  879 (1211)
Q Consensus       816 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l--------------~~-~~~~~g~~~eA~~~~~~~~~~g~~p~-~~~~  879 (1211)
                      |...|++++|++.|+++.+.. +.+...+..+              +. .+...|++++|+..++++++  ..|+ ...+
T Consensus        99 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~  175 (327)
T 3cv0_A           99 HTNEHNANAALASLRAWLLSQ-PQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALE--MNPNDAQLH  175 (327)
T ss_dssp             HHHTTCHHHHHHHHHHHHHTS-TTTTTC--------------------CCTTSHHHHHHHHHHHHHHHH--HSTTCHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHh--hCCCCHHHH
Confidence            666666666666666666532 1122333332              33 47788999999999999998  5664 5788


Q ss_pred             HHHHHHHHhcCChhhHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCcccCHHHHHHHHHHhhhh
Q 000951          880 ITLINGMCRVGNFQGAFKLKDEMEALGISSSDVAESAMVRGLAHCGKVEEAMLVLNRMLRMRLVPTIATFTTLIHKFCKE  959 (1211)
Q Consensus       880 ~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~p~~~~~~~L~~~~~~~  959 (1211)
                      ..++.++...|++++|.+.++++.+.. +.+..++..++.++...|++++|+..|+++++..+. +..+|..++.+|...
T Consensus       176 ~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~  253 (327)
T 3cv0_A          176 ASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALDINPG-YVRVMYNMAVSYSNM  253 (327)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHh
Confidence            899999999999999999999998763 566788999999999999999999999999998765 788999999999999


Q ss_pred             CCHHHHHHHHHHHHhcCCCCc-------------hHHHHHHHHHHHhCCChhHHHHHHHHH
Q 000951          960 AKFVDALKLKGTMELSGVKLD-------------VVSYNVLISGLCANGDVMPAFELYEEM 1007 (1211)
Q Consensus       960 g~~~~A~~~~~~~~~~~~~p~-------------~~~~~~l~~~~~~~g~~~~a~~~~~~~ 1007 (1211)
                      |++++|+..++.....  .|+             ...|..++.+|...|++++|..++++.
T Consensus       254 g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~  312 (327)
T 3cv0_A          254 SQYDLAAKQLVRAIYM--QVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQN  312 (327)
T ss_dssp             TCHHHHHHHHHHHHHH--HTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCC
T ss_pred             ccHHHHHHHHHHHHHh--CCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence            9999999998877665  565             347888999999999999999988654

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.75  E-value=1.6e-16  Score=174.06  Aligned_cols=251  Identities=10%  Similarity=0.026  Sum_probs=161.9

Q ss_pred             hcCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHH
Q 000951          713 RMGNMMMANDLLSTMRSRKLCPS--LATYNILLHGYSKKKDLLMCSMLLNTMKMEGLLPDKLTCHSLILGFCETGMLEVG  790 (1211)
Q Consensus       713 ~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A  790 (1211)
                      ..|++++|+..+++...  ..|+  ......+..+|...|++++|+..++..    -.|+..++..+...+...++.++|
T Consensus        11 ~~g~y~~ai~~~~~~~~--~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~----~~~~~~a~~~la~~~~~~~~~~~A   84 (291)
T 3mkr_A           11 YIGSYQQCINEAQRVKP--SSPERDVERDVFLYRAYLAQRKYGVVLDEIKPS----SAPELQAVRMFAEYLASHSRRDAI   84 (291)
T ss_dssp             HTTCHHHHHHHHHHSCC--CSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT----SCHHHHHHHHHHHHHHCSTTHHHH
T ss_pred             HHHHHHHHHHHHHhccc--CCchhhHHHHHHHHHHHHHCCCHHHHHHHhccc----CChhHHHHHHHHHHHcCCCcHHHH
Confidence            35666666666665442  2332  234455566666677777666655331    233445556666666666777777


Q ss_pred             HHHHHHHHHcCCCC-CHhhHHHHHHHHHhcCcHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhcchhhHHHHHHHHHH
Q 000951          791 FKFLKKMIAEGTMV-DCFTFNVLMRKCCEAGEMGKAFDLFNIMNMLGVVPDTNTQDAIIMGLKRIAAFQESHFVLRGMAE  869 (1211)
Q Consensus       791 ~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~  869 (1211)
                      ++.+++++..+..| +...+..++.+|...|++++|++.+++      +.+...+..++.+|.+.|++++|+..|+++++
T Consensus        85 ~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~  158 (291)
T 3mkr_A           85 VAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKKMQD  158 (291)
T ss_dssp             HHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence            77777776654333 345556666677777777777777765      34566677777777777777777777777776


Q ss_pred             cCCCCChhHHHH----HHHHHHhcCChhhHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCcccC
Q 000951          870 KGLTPKCTQYIT----LINGMCRVGNFQGAFKLKDEMEALGISSSDVAESAMVRGLAHCGKVEEAMLVLNRMLRMRLVPT  945 (1211)
Q Consensus       870 ~g~~p~~~~~~~----l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~p~  945 (1211)
                        ..|+.. ...    ....+...|++++|...|+++++. .+.+..+++.++.++.+.|++++|+..|+++++.+|. +
T Consensus       159 --~~p~~~-~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~-~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~-~  233 (291)
T 3mkr_A          159 --QDEDAT-LTQLATAWVSLAAGGEKLQDAYYIFQEMADK-CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSG-H  233 (291)
T ss_dssp             --HCTTCH-HHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH-SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-C
T ss_pred             --hCcCcH-HHHHHHHHHHHHhCchHHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-C
Confidence              456542 112    223333457778888888877766 4667777777788888888888888888888777655 7


Q ss_pred             HHHHHHHHHHhhhhCCHHH-HHHHHHHHHhcCCCCchH
Q 000951          946 IATFTTLIHKFCKEAKFVD-ALKLKGTMELSGVKLDVV  982 (1211)
Q Consensus       946 ~~~~~~L~~~~~~~g~~~~-A~~~~~~~~~~~~~p~~~  982 (1211)
                      +.+|..++.++...|+.++ +..+++...+.  .|+..
T Consensus       234 ~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~--~P~~~  269 (291)
T 3mkr_A          234 PETLINLVVLSQHLGKPPEVTNRYLSQLKDA--HRSHP  269 (291)
T ss_dssp             HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--CTTCH
T ss_pred             HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh--CCCCh
Confidence            7777788877777787765 45666666555  67554

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.74  E-value=2.5e-16  Score=177.10  Aligned_cols=253  Identities=11%  Similarity=0.026  Sum_probs=171.3

Q ss_pred             HHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCC
Q 000951          709 DGFSRMGNMMMANDLLSTMRSRKLCP-SLATYNILLHGYSKKKDLLMCSMLLNTMKMEGLLP-DKLTCHSLILGFCETGM  786 (1211)
Q Consensus       709 ~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~  786 (1211)
                      ..+...|++++|..+|+++.+.  .| +...|..++.++...|++++|+..|+++++.  .| +..++..++..|...|+
T Consensus        29 ~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~~~~~~  104 (327)
T 3cv0_A           29 LSMLKLANLAEAALAFEAVCQA--APEREEAWRSLGLTQAENEKDGLAIIALNHARML--DPKDIAVHAALAVSHTNEHN  104 (327)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHhccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CcCCHHHHHHHHHHHHHcCC
Confidence            3344444444444444444332  12 3444444444444444444444444444442  22 33344444444555555


Q ss_pred             hHHHHHHHHHHHHcCCCCCHhhHHH-------------H-HH-HHHhcCcHHHHHHHHHHHHHCCCCCChhhHHHHHHHH
Q 000951          787 LEVGFKFLKKMIAEGTMVDCFTFNV-------------L-MR-KCCEAGEMGKAFDLFNIMNMLGVVPDTNTQDAIIMGL  851 (1211)
Q Consensus       787 ~~~A~~~~~~~~~~~~~~~~~~~~~-------------l-~~-~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~  851 (1211)
                      +++|++.++++++... .+...+..             + .. ++...|++++|++.++++.+.. +.+...+..++..|
T Consensus       105 ~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~  182 (327)
T 3cv0_A          105 ANAALASLRAWLLSQP-QYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHASLGVLY  182 (327)
T ss_dssp             HHHHHHHHHHHHHTST-TTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCC-ccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHH
Confidence            5555555555544311 11112222             2 33 4777888999999999888754 33678888999999


Q ss_pred             HhhcchhhHHHHHHHHHHcCCCCC-hhHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHH
Q 000951          852 KRIAAFQESHFVLRGMAEKGLTPK-CTQYITLINGMCRVGNFQGAFKLKDEMEALGISSSDVAESAMVRGLAHCGKVEEA  930 (1211)
Q Consensus       852 ~~~g~~~eA~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA  930 (1211)
                      ...|++++|+..++++++  ..|+ ..++..++.++...|++++|...|+++.+.. +.+..++..++.++...|++++|
T Consensus       183 ~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~g~~~~A  259 (327)
T 3cv0_A          183 NLSNNYDSAAANLRRAVE--LRPDDAQLWNKLGATLANGNRPQEALDAYNRALDIN-PGYVRVMYNMAVSYSNMSQYDLA  259 (327)
T ss_dssp             HHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHhccHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhccHHHH
Confidence            999999999999999988  6675 5788999999999999999999999998763 56778899999999999999999


Q ss_pred             HHHHHHHHhCCccc-----------CHHHHHHHHHHhhhhCCHHHHHHHHH
Q 000951          931 MLVLNRMLRMRLVP-----------TIATFTTLIHKFCKEAKFVDALKLKG  970 (1211)
Q Consensus       931 ~~~~~~~~~~~~~p-----------~~~~~~~L~~~~~~~g~~~~A~~~~~  970 (1211)
                      .+.|+++++..+.+           +..+|..++.++...|++++|..+++
T Consensus       260 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~  310 (327)
T 3cv0_A          260 AKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYA  310 (327)
T ss_dssp             HHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTT
T ss_pred             HHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence            99999999876542           47889999999999999999999876

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=99.73  E-value=2.2e-17  Score=183.06  Aligned_cols=253  Identities=11%  Similarity=0.074  Sum_probs=94.5

Q ss_pred             HcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHH
Q 000951          571 CKGGNLKEAKRFLNSLHHIPSAVDTVAYNTILAETCKSGNLWEAIVLLDEMVQFNLLPDRYTYTILLAGLCRKGKVVSAL  650 (1211)
Q Consensus       571 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~  650 (1211)
                      .+.|++++|.++++++      +++.+|..|+.++.+.|++++|++.|.+.      +|..+|..++.++...|++++|+
T Consensus        14 ~~~~~ld~A~~fae~~------~~~~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi   81 (449)
T 1b89_A           14 EHIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELV   81 (449)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHccCHHHHHHHHHhC------CChHHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHH
Confidence            3567788888887776      23458888888888888888888888653      46667788888888888888888


Q ss_pred             HHHHHHHHcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 000951          651 LFFEKVVSKRTFSPNNVMFTCLVDGLFKAGQSKAAMHISKIMDKEGVYPDTIAFNAVMDGFSRMGNMMMANDLLSTMRSR  730 (1211)
Q Consensus       651 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~  730 (1211)
                      .+++.+.+.   .++..+.+.++.+|.+.|+++++.++++       .|+..+|+.+++.|...|++++|...|..+   
T Consensus        82 ~yl~~ark~---~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---  148 (449)
T 1b89_A           82 KYLQMARKK---ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---  148 (449)
T ss_dssp             ------------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT---
T ss_pred             HHHHHHHHh---CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh---
Confidence            877777663   4456677788888888888888776664       356668888888888888888888888866   


Q ss_pred             CCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHH
Q 000951          731 KLCPSLATYNILLHGYSKKKDLLMCSMLLNTMKMEGLLPDKLTCHSLILGFCETGMLEVGFKFLKKMIAEGTMVDCFTFN  810 (1211)
Q Consensus       731 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~  810 (1211)
                            ..|..|+.++.+.|++++|++.++++      .+..+|..++.+|...|+++.|......+.     ..+....
T Consensus       149 ------~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-----~~ad~l~  211 (449)
T 1b89_A          149 ------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-----VHADELE  211 (449)
T ss_dssp             ------TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-----TCHHHHH
T ss_pred             ------hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-----hCHhhHH
Confidence                  25778888888888888888888877      267788888888888888888855544321     2233344


Q ss_pred             HHHHHHHhcCcHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHh--hcchhhHHHHHHH
Q 000951          811 VLMRKCCEAGEMGKAFDLFNIMNMLGVVPDTNTQDAIIMGLKR--IAAFQESHFVLRG  866 (1211)
Q Consensus       811 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~g~~~eA~~~~~~  866 (1211)
                      .++..|.+.|++++|+.+++..+... +.-...|+.|+-+|.+  -++..|.+++|..
T Consensus       212 ~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~  268 (449)
T 1b89_A          212 ELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWS  268 (449)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHST
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence            56777777777777777777776432 2224455555555543  3455555555543

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.72  E-value=8.6e-16  Score=168.20  Aligned_cols=270  Identities=10%  Similarity=0.004  Sum_probs=173.6

Q ss_pred             HHHHcCCHHHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCh
Q 000951          675 GLFKAGQSKAAMHISKIMDKEGVYPDT--IAFNAVMDGFSRMGNMMMANDLLSTMRSRKLCPSLATYNILLHGYSKKKDL  752 (1211)
Q Consensus       675 ~~~~~g~~~~A~~~~~~~~~~g~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~  752 (1211)
                      -....|+++.|+...+.....  .|+.  .....+..+|...|++++|...++.    .-+|+..++..++..+...|+.
T Consensus         8 ~~~~~g~y~~ai~~~~~~~~~--~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~~~   81 (291)
T 3mkr_A            8 NAFYIGSYQQCINEAQRVKPS--SPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHSRR   81 (291)
T ss_dssp             HHHHTTCHHHHHHHHHHSCCC--SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCSTTH
T ss_pred             HHHHHHHHHHHHHHHHhcccC--CchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCCcH
Confidence            344566666666665554322  2332  2334455666667777766665533    1234566666677777777777


Q ss_pred             HHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHH
Q 000951          753 LMCSMLLNTMKMEGLLPD-KLTCHSLILGFCETGMLEVGFKFLKKMIAEGTMVDCFTFNVLMRKCCEAGEMGKAFDLFNI  831 (1211)
Q Consensus       753 ~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~  831 (1211)
                      ++|++.+++++..+..|+ ...+..++.++...|++++|++.+++      +.+...+..++.+|.+.|++++|.+.|++
T Consensus        82 ~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~  155 (291)
T 3mkr_A           82 DAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKK  155 (291)
T ss_dssp             HHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            777777777776555563 33445555777777777777777766      34566777777777777777777777777


Q ss_pred             HHHCCCCCChhhHHHH----HHHHHhhcchhhHHHHHHHHHHcCCCCC-hhHHHHHHHHHHhcCChhhHHHHHHHHHHcC
Q 000951          832 MNMLGVVPDTNTQDAI----IMGLKRIAAFQESHFVLRGMAEKGLTPK-CTQYITLINGMCRVGNFQGAFKLKDEMEALG  906 (1211)
Q Consensus       832 ~~~~~~~~~~~~~~~l----~~~~~~~g~~~eA~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~  906 (1211)
                      +.+..  |+.. ...+    +..+...|++++|+.+|+++++  ..|+ ...+..++.++.+.|++++|...|+++++..
T Consensus       156 ~~~~~--p~~~-~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~--~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~  230 (291)
T 3mkr_A          156 MQDQD--EDAT-LTQLATAWVSLAAGGEKLQDAYYIFQEMAD--KCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD  230 (291)
T ss_dssp             HHHHC--TTCH-HHHHHHHHHHHHHCTTHHHHHHHHHHHHHH--HSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHhhC--cCcH-HHHHHHHHHHHHhCchHHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence            77643  4322 2222    2333345778888888888887  4554 4777788888888888888888888887763


Q ss_pred             CCCchHHHHHHHHHHHhcCCHHH-HHHHHHHHHhCCcccCHHHHHHHHHHhhhhCCHHHHHH
Q 000951          907 ISSSDVAESAMVRGLAHCGKVEE-AMLVLNRMLRMRLVPTIATFTTLIHKFCKEAKFVDALK  967 (1211)
Q Consensus       907 ~~~~~~~~~~l~~~~~~~g~~~e-A~~~~~~~~~~~~~p~~~~~~~L~~~~~~~g~~~~A~~  967 (1211)
                       |.++.++..++.++...|+.++ +.++++++++.+|. ++.+.    ....+.+.++++..
T Consensus       231 -p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~-~~~~~----d~~~~~~~fd~~~~  286 (291)
T 3mkr_A          231 -SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRS-HPFIK----EYRAKENDFDRLVL  286 (291)
T ss_dssp             -TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHHHH----HHHHHHHHHHHHHH
T ss_pred             -CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCC-ChHHH----HHHHHHHHHHHHHH
Confidence             5677778888888888888765 56788888887655 55443    23444445555444

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}

Probab=99.71  E-value=2.5e-17  Score=196.02  Aligned_cols=154  Identities=14%  Similarity=0.159  Sum_probs=122.0

Q ss_pred             CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH---cCCCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHH
Q 000951          171 ICPNVATFNILINVSCVEGKLKKAGYLLRKMEE---SGYVPNIVTYNTLLNWYCKKGRYKAAFKLIDCMASKGIEADVCT  247 (1211)
Q Consensus       171 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~  247 (1211)
                      ...-..|||++|++||+.|++++|..+|++|.+   .|+.||++|||+||++||+.|++++|.++|++|.+.|+.||++|
T Consensus       123 ~~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvT  202 (1134)
T 3spa_A          123 LSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLS  202 (1134)
T ss_dssp             CCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHH
T ss_pred             HHhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHH
Confidence            344466899999999999999999999987764   57899999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcCCh-HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC------hHHHHH
Q 000951          248 YNMFIDDLCRNNRS-AKGYLLLKNMRKRMITPNEVTYNTLINGFVKEGKIQVASRVFDEMSMLNFSPN------SITYNE  320 (1211)
Q Consensus       248 ~~~li~~~~~~g~~-~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~------~~~~~~  320 (1211)
                      ||++|+++|+.|+. ++|.++|++|.+.|+.||.++|+++++++.+.+-++..    +++ ..++.|+      +.+...
T Consensus       203 YntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~V----rkv-~P~f~p~~~~~~~~~t~~L  277 (1134)
T 3spa_A          203 YAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAV----HKV-KPTFSLPPQLPPPVNTSKL  277 (1134)
T ss_dssp             HHHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHH----GGG-CCCCCCCCCCCCCCCCCTT
T ss_pred             HHHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHH----HHh-CcccCCCCCCcccccchHH
Confidence            99999999998885 67889999999999999999999988877665433333    333 2233433      455556


Q ss_pred             HHHHHHhcC
Q 000951          321 LIDGHCCKG  329 (1211)
Q Consensus       321 li~~~~~~g  329 (1211)
                      |.+.|.+.+
T Consensus       278 L~dl~s~d~  286 (1134)
T 3spa_A          278 LRDVYAKDG  286 (1134)
T ss_dssp             THHHHCCCS
T ss_pred             HHHHHccCC
Confidence            666666655

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}

Probab=99.70  E-value=1.5e-17  Score=197.91  Aligned_cols=119  Identities=14%  Similarity=0.169  Sum_probs=65.0

Q ss_pred             HhHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 000951          210 IVTYNTLLNWYCKKGRYKAAFKLIDCMASKGIEADVCTYNMFIDDLCRNNRSAKGYLLLKNMRKRMITPNEVTYNTLING  289 (1211)
Q Consensus       210 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~  289 (1211)
                      ..|||++|++||+.|++++|.++|++|.+.                                ...|+.||++|||+||++
T Consensus       127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m--------------------------------~~kG~~PdvvTYNtLI~G  174 (1134)
T 3spa_A          127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQ--------------------------------RQKRKLLTLDMYNAVMLG  174 (1134)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHS--------------------------------HHHHTTCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--------------------------------hhcCCCCCHhHHHHHHHH
Confidence            446666666666666666666666655432                                122444555555555555


Q ss_pred             HHHcCCHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCC-HHHHHHHHHHHHHCCCCcCHhHHHHHHHHH
Q 000951          290 FVKEGKIQVASRVFDEMSMLNFSPNSITYNELIDGHCCKGN-FKEAFRLLAMMEEMGLRPNEVSYGALLNGF  360 (1211)
Q Consensus       290 ~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~  360 (1211)
                      ||+.|++++|.++|++|.+.|+.||++|||++|.++|+.|+ .++|.++|++|.+.|+.||.+||++++.++
T Consensus       175 lck~G~~~eA~~Lf~eM~~~G~~PDvvTYntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~  246 (1134)
T 3spa_A          175 WARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEE  246 (1134)
T ss_dssp             HHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHH
T ss_pred             HHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChh
Confidence            55555555555555555555555555555555555555554 244555555555555555555555555443

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.70  E-value=1.7e-15  Score=171.26  Aligned_cols=245  Identities=7%  Similarity=-0.024  Sum_probs=187.6

Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCc-HHHHHHHHHHHHHCCCCCChhhHHHHHHH
Q 000951          772 LTCHSLILGFCETGMLEVGFKFLKKMIAEGTMVDCFTFNVLMRKCCEAGE-MGKAFDLFNIMNMLGVVPDTNTQDAIIMG  850 (1211)
Q Consensus       772 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~~l~~~  850 (1211)
                      ..|..+..++...|++++|+..++++++.+ +.+..+|+.++.+|...|+ +++|++.|+++++.. +.+...|..++.+
T Consensus        98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~~  175 (382)
T 2h6f_A           98 DVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRVL  175 (382)
T ss_dssp             HHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHH
Confidence            456666777777888888888888888742 2246677888888888886 888888888887744 2357788888888


Q ss_pred             HHhhcchhhHHHHHHHHHHcCCCCCh-hHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCchHHHHHHHHHHHh-cCCHH
Q 000951          851 LKRIAAFQESHFVLRGMAEKGLTPKC-TQYITLINGMCRVGNFQGAFKLKDEMEALGISSSDVAESAMVRGLAH-CGKVE  928 (1211)
Q Consensus       851 ~~~~g~~~eA~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~  928 (1211)
                      |...|++++|+..|+++++  ++|+. .+|..++.++...|++++|+..|+++++.. +.+..+|+.++.++.. .|..+
T Consensus       176 ~~~~g~~~eAl~~~~kal~--ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~l~~~~~  252 (382)
T 2h6f_A          176 VEWLRDPSQELEFIADILN--QDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYND  252 (382)
T ss_dssp             HHHHTCCTTHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCS
T ss_pred             HHHccCHHHHHHHHHHHHH--hCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCcch
Confidence            8888888888888888888  77854 788888888888888888888888888773 5677788888888888 56557


Q ss_pred             HH-----HHHHHHHHhCCcccCHHHHHHHHHHhhhhC--CHHHHHHHHHHHHhcCCCCchH-HHHHHHHHHHhCC-----
Q 000951          929 EA-----MLVLNRMLRMRLVPTIATFTTLIHKFCKEA--KFVDALKLKGTMELSGVKLDVV-SYNVLISGLCANG-----  995 (1211)
Q Consensus       929 eA-----~~~~~~~~~~~~~p~~~~~~~L~~~~~~~g--~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g-----  995 (1211)
                      +|     ++.|+++++.+|. +..+|..++.++...|  ++++|++.++.+   ...|+.. .+..++.+|...|     
T Consensus       253 eA~~~~el~~~~~Al~l~P~-~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~---~~~p~~~~al~~La~~~~~~~~~~~~  328 (382)
T 2h6f_A          253 RAVLEREVQYTLEMIKLVPH-NESAWNYLKGILQDRGLSKYPNLLNQLLDL---QPSHSSPYLIAFLVDIYEDMLENQCD  328 (382)
T ss_dssp             HHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTTTCGGGCHHHHHHHHHH---TTTCCCHHHHHHHHHHHHHHHHTTCS
T ss_pred             HHHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHccCccchHHHHHHHHHh---ccCCCCHHHHHHHHHHHHHHhccccc
Confidence            77     5888888888766 8888999998888887  688888877665   3467544 7788888887764     


Q ss_pred             ----ChhHHHHHHHHH-HHcCCccCh-hhHHHHHHHHH
Q 000951          996 ----DVMPAFELYEEM-KHKGLCPNS-TTYSVLIDAIS 1027 (1211)
Q Consensus       996 ----~~~~a~~~~~~~-~~~g~~p~~-~~~~~l~~~~~ 1027 (1211)
                          ..++|+++++++ .+  +.|.. .-|..+...+.
T Consensus       329 ~~~~~~~~A~~~~~~l~~~--~DP~r~~~w~~~~~~l~  364 (382)
T 2h6f_A          329 NKEDILNKALELCEILAKE--KDTIRKEYWRYIGRSLQ  364 (382)
T ss_dssp             SHHHHHHHHHHHHHHHHHT--TCGGGHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHHH--hCchhHHHHHHHHHHHH
Confidence                257888888887 44  56766 67777766653

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.69  E-value=2.6e-15  Score=169.86  Aligned_cols=250  Identities=9%  Similarity=-0.019  Sum_probs=207.6

Q ss_pred             CCC-CHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCC-hHHHHHHHHHHHHcCCCCCHhh
Q 000951          732 LCP-SLATYNILLHGYSKKKDLLMCSMLLNTMKMEGLLP-DKLTCHSLILGFCETGM-LEVGFKFLKKMIAEGTMVDCFT  808 (1211)
Q Consensus       732 ~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~  808 (1211)
                      +.| +...|+.++.++...|++++|+..|+++++  +.| +..+|+.++.++...|+ +++|+..++++++.+ +.+..+
T Consensus        92 ~~p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~--l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a  168 (382)
T 2h6f_A           92 YSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIE--LNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQV  168 (382)
T ss_dssp             CCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHH
T ss_pred             CChhhHHHHHHHHHHHHHCCChHHHHHHHHHHHH--hCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHH
Confidence            344 467788888999999999999999999998  567 55678888899999997 999999999999853 235778


Q ss_pred             HHHHHHHHHhcCcHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhcchhhHHHHHHHHHHcCCCCC-hhHHHHHHHHHH
Q 000951          809 FNVLMRKCCEAGEMGKAFDLFNIMNMLGVVPDTNTQDAIIMGLKRIAAFQESHFVLRGMAEKGLTPK-CTQYITLINGMC  887 (1211)
Q Consensus       809 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~g~~p~-~~~~~~l~~~~~  887 (1211)
                      |..++.+|...|++++|+..|+++++.. +.+...|..++.++.+.|++++|+..|+++++  ++|+ ..+|..++.++.
T Consensus       169 ~~~~g~~~~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~--l~P~~~~a~~~lg~~l~  245 (382)
T 2h6f_A          169 WHHRRVLVEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLK--EDVRNNSVWNQRYFVIS  245 (382)
T ss_dssp             HHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHH--HCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHH--hCCCCHHHHHHHHHHHH
Confidence            9999999999999999999999998754 34688999999999999999999999999999  8886 488999999999


Q ss_pred             h-cCChhhH-----HHHHHHHHHcCCCCchHHHHHHHHHHHhcC--CHHHHHHHHHHHHhCCcccCHHHHHHHHHHhhhh
Q 000951          888 R-VGNFQGA-----FKLKDEMEALGISSSDVAESAMVRGLAHCG--KVEEAMLVLNRMLRMRLVPTIATFTTLIHKFCKE  959 (1211)
Q Consensus       888 ~-~g~~~eA-----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~eA~~~~~~~~~~~~~p~~~~~~~L~~~~~~~  959 (1211)
                      . .|..++|     +..|+++++.. +.+..+|..++.++...|  ++++|++.++++ +.++. +..++..|+.+|.+.
T Consensus       246 ~l~~~~~eA~~~~el~~~~~Al~l~-P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~-~~~al~~La~~~~~~  322 (382)
T 2h6f_A          246 NTTGYNDRAVLEREVQYTLEMIKLV-PHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHS-SPYLIAFLVDIYEDM  322 (382)
T ss_dssp             HTTCSCSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCC-CHHHHHHHHHHHHHH
T ss_pred             HhcCcchHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCC-CHHHHHHHHHHHHHH
Confidence            8 6666888     58899998873 667889999999999988  689999999988 65544 788999999999987


Q ss_pred             C---------CHHHHHHHHHHH-HhcCCCCchH-HHHHHHHHHH
Q 000951          960 A---------KFVDALKLKGTM-ELSGVKLDVV-SYNVLISGLC  992 (1211)
Q Consensus       960 g---------~~~~A~~~~~~~-~~~~~~p~~~-~~~~l~~~~~  992 (1211)
                      |         .+++|+++|+.+ ...  +|... .|..++..+.
T Consensus       323 ~~~~~~~~~~~~~~A~~~~~~l~~~~--DP~r~~~w~~~~~~l~  364 (382)
T 2h6f_A          323 LENQCDNKEDILNKALELCEILAKEK--DTIRKEYWRYIGRSLQ  364 (382)
T ss_dssp             HHTTCSSHHHHHHHHHHHHHHHHHTT--CGGGHHHHHHHHHHHH
T ss_pred             hcccccchHHHHHHHHHHHHHHHHHh--CchhHHHHHHHHHHHH
Confidence            5         358999999877 544  88665 5666666544

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.69  E-value=2.9e-15  Score=161.75  Aligned_cols=225  Identities=12%  Similarity=0.037  Sum_probs=157.9

Q ss_pred             HHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC--CC----HhhH
Q 000951          736 LATYNILLHGYSKKKDLLMCSMLLNTMKMEGLLPDKLTCHSLILGFCETGMLEVGFKFLKKMIAEGTM--VD----CFTF  809 (1211)
Q Consensus       736 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~----~~~~  809 (1211)
                      ...|..++..+...|++++|+..|+++++..  ++...+..++.+|...|++++|+..++++++....  ++    ..++
T Consensus         5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~   82 (258)
T 3uq3_A            5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSF   82 (258)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence            3456666777777777777777777777654  55566666777777777777777777777663211  11    4566


Q ss_pred             HHHHHHHHhcCcHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhcchhhHHHHHHHHHHcCCCCCh-hHHHHHHHHHHh
Q 000951          810 NVLMRKCCEAGEMGKAFDLFNIMNMLGVVPDTNTQDAIIMGLKRIAAFQESHFVLRGMAEKGLTPKC-TQYITLINGMCR  888 (1211)
Q Consensus       810 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~g~~p~~-~~~~~l~~~~~~  888 (1211)
                      ..++.+|...|++++|++.|+++.+..  |+       ...+...|++++|+..+++++.  ..|+. ..+..++.++..
T Consensus        83 ~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~-------~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~  151 (258)
T 3uq3_A           83 ARIGNAYHKLGDLKKTIEYYQKSLTEH--RT-------ADILTKLRNAEKELKKAEAEAY--VNPEKAEEARLEGKEYFT  151 (258)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHC--CC-------HHHHHHHHHHHHHHHHHHHHHH--CCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcccHHHHHHHHHHHHhcC--ch-------hHHHHHHhHHHHHHHHHHHHHH--cCcchHHHHHHHHHHHHH
Confidence            777777777777777777777777632  33       2345566777788888877777  66643 667777777777


Q ss_pred             cCChhhHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCcccCHHHHHHHHHHhhhhCCHHHHHHH
Q 000951          889 VGNFQGAFKLKDEMEALGISSSDVAESAMVRGLAHCGKVEEAMLVLNRMLRMRLVPTIATFTTLIHKFCKEAKFVDALKL  968 (1211)
Q Consensus       889 ~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~p~~~~~~~L~~~~~~~g~~~~A~~~  968 (1211)
                      .|++++|...|+++++.. +.+..++..++.++...|++++|+..++++++..|. +..+|..++.++...|++++|...
T Consensus       152 ~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~  229 (258)
T 3uq3_A          152 KSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN-FVRAYIRKATAQIAVKEYASALET  229 (258)
T ss_dssp             TTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             hcCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHH-HHHHHHHHHHHHHHHhhHHHHHHH
Confidence            788888888888777653 556667777777777788888888888877776654 677777777777778888888777


Q ss_pred             HHHHHhc
Q 000951          969 KGTMELS  975 (1211)
Q Consensus       969 ~~~~~~~  975 (1211)
                      ++.....
T Consensus       230 ~~~a~~~  236 (258)
T 3uq3_A          230 LDAARTK  236 (258)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHh
Confidence            7665544

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.69  E-value=1.4e-15  Score=159.01  Aligned_cols=192  Identities=12%  Similarity=0.066  Sum_probs=105.6

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHHHHHCCCCCChhhHHHHHHHHH
Q 000951          773 TCHSLILGFCETGMLEVGFKFLKKMIAEGTMVDCFTFNVLMRKCCEAGEMGKAFDLFNIMNMLGVVPDTNTQDAIIMGLK  852 (1211)
Q Consensus       773 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~  852 (1211)
                      .+..++..+...|++++|+..++++++.. +.+...+..++.++.+.|++++|++.|+++++.. +.+...|..++.+|.
T Consensus         7 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~   84 (217)
T 2pl2_A            7 NPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLSEAYV   84 (217)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHH
Confidence            33344444444444444444444444421 1123444444444555555555555555444422 122444445555555


Q ss_pred             hh-----------cchhhHHHHHHHHHHcCCCCC-hhHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCchHHHHHHHHH
Q 000951          853 RI-----------AAFQESHFVLRGMAEKGLTPK-CTQYITLINGMCRVGNFQGAFKLKDEMEALGISSSDVAESAMVRG  920 (1211)
Q Consensus       853 ~~-----------g~~~eA~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~  920 (1211)
                      ..           |++++|+..|+++++  +.|+ ...+..++.++...|++++|+..|+++++..  .+..++..++.+
T Consensus        85 ~~~~~~~~~~~~~g~~~~A~~~~~~al~--~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la~~  160 (217)
T 2pl2_A           85 ALYRQAEDRERGKGYLEQALSVLKDAER--VNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALAEL  160 (217)
T ss_dssp             HHHHTCSSHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHH
T ss_pred             HhhhhhhhhcccccCHHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHHHH
Confidence            54           777777777777776  6664 3666677777777777777777777777665  566667777777


Q ss_pred             HHhcCCHHHHHHHHHHHHhCCcccCHHHHHHHHHHhhhhCCHHHHHHHHHH
Q 000951          921 LAHCGKVEEAMLVLNRMLRMRLVPTIATFTTLIHKFCKEAKFVDALKLKGT  971 (1211)
Q Consensus       921 ~~~~g~~~eA~~~~~~~~~~~~~p~~~~~~~L~~~~~~~g~~~~A~~~~~~  971 (1211)
                      |...|++++|+..|+++++.+|. ++.++..++.++...|++++|+..|+.
T Consensus       161 ~~~~g~~~~A~~~~~~al~~~P~-~~~~~~~la~~~~~~g~~~~A~~~~~~  210 (217)
T 2pl2_A          161 YLSMGRLDEALAQYAKALEQAPK-DLDLRVRYASALLLKGKAEEAARAAAL  210 (217)
T ss_dssp             HHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTC-------------
T ss_pred             HHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHccCHHHHHHHHHH
Confidence            77777777777777777776654 666777777777777777777776654

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.68  E-value=1.2e-15  Score=159.44  Aligned_cols=197  Identities=13%  Similarity=0.038  Sum_probs=163.6

Q ss_pred             CCCHhhHHHHHHHHHhcCcHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhcchhhHHHHHHHHHHcCCCCCh-hHHHH
Q 000951          803 MVDCFTFNVLMRKCCEAGEMGKAFDLFNIMNMLGVVPDTNTQDAIIMGLKRIAAFQESHFVLRGMAEKGLTPKC-TQYIT  881 (1211)
Q Consensus       803 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~g~~p~~-~~~~~  881 (1211)
                      +++...+..++.++.+.|++++|+..|+++++.. +.+...|..++..+.+.|++++|+..|+++++  ..|+. ..+..
T Consensus         2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~   78 (217)
T 2pl2_A            2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVA--RTPRYLGGYMV   78 (217)
T ss_dssp             --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHH
T ss_pred             CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCcHHHHHH
Confidence            4567788899999999999999999999999754 34588899999999999999999999999999  78864 88999


Q ss_pred             HHHHHHhc-----------CChhhHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCcccCHHHHH
Q 000951          882 LINGMCRV-----------GNFQGAFKLKDEMEALGISSSDVAESAMVRGLAHCGKVEEAMLVLNRMLRMRLVPTIATFT  950 (1211)
Q Consensus       882 l~~~~~~~-----------g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~p~~~~~~  950 (1211)
                      ++.++...           |++++|+..|+++++.. |.+..++..++.++...|++++|+..|+++++.+  .++.+|.
T Consensus        79 lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~  155 (217)
T 2pl2_A           79 LSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVN-PRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRS  155 (217)
T ss_dssp             HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHH
T ss_pred             HHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHH
Confidence            99999999           99999999999999873 6678889999999999999999999999999988  4899999


Q ss_pred             HHHHHhhhhCCHHHHHHHHHHHHhcCCCCchH-HHHHHHHHHHhCCChhHHHHHHHHH
Q 000951          951 TLIHKFCKEAKFVDALKLKGTMELSGVKLDVV-SYNVLISGLCANGDVMPAFELYEEM 1007 (1211)
Q Consensus       951 ~L~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~ 1007 (1211)
                      .++.+|...|++++|+..|+.....  .|+.. .+..++.++...|++++|.+.+++.
T Consensus       156 ~la~~~~~~g~~~~A~~~~~~al~~--~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~  211 (217)
T 2pl2_A          156 ALAELYLSMGRLDEALAQYAKALEQ--APKDLDLRVRYASALLLKGKAEEAARAAALE  211 (217)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHTC--------------
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence            9999999999999999999987766  78554 8899999999999999999988765

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=99.68  E-value=1.6e-15  Score=177.70  Aligned_cols=188  Identities=13%  Similarity=0.072  Sum_probs=93.0

Q ss_pred             hHHHHHHHHHhcC---cHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhh----cchhhHHHHHHHHHHcCCCCChhHHH
Q 000951          808 TFNVLMRKCCEAG---EMGKAFDLFNIMNMLGVVPDTNTQDAIIMGLKRI----AAFQESHFVLRGMAEKGLTPKCTQYI  880 (1211)
Q Consensus       808 ~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~eA~~~~~~~~~~g~~p~~~~~~  880 (1211)
                      .+..|+.+|...|   ++++|++.|++..+.+ .++...+..++..|...    +++++|+.+|+++.    .-+..++.
T Consensus       178 a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa----~g~~~a~~  252 (452)
T 3e4b_A          178 CYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA----PGYPASWV  252 (452)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG----GGSTHHHH
T ss_pred             HHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc----CCCHHHHH
Confidence            4555555555555   5555555555555543 23333334455555433    45555555555543    11234455


Q ss_pred             HHHHH-H--HhcCChhhHHHHHHHHHHcCCCCchHHHHHHHHHHHhcC-----CHHHHHHHHHHHHhCCcccCHHHHHHH
Q 000951          881 TLING-M--CRVGNFQGAFKLKDEMEALGISSSDVAESAMVRGLAHCG-----KVEEAMLVLNRMLRMRLVPTIATFTTL  952 (1211)
Q Consensus       881 ~l~~~-~--~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-----~~~eA~~~~~~~~~~~~~p~~~~~~~L  952 (1211)
                      .|+.+ +  ...+++++|++.|+++.+.|   +..++..++.+|. .|     ++++|+..|+++. .+   ++.++..|
T Consensus       253 ~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~g---~~~A~~~L  324 (452)
T 3e4b_A          253 SLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-GR---EVAADYYL  324 (452)
T ss_dssp             HHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-TT---CHHHHHHH
T ss_pred             HHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-CC---CHHHHHHH
Confidence            55554 2  34555555555555555443   3445555555554 33     5555665555555 11   45555555


Q ss_pred             HHHhhh----hCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHh----CCChhHHHHHHHHHHHcC
Q 000951          953 IHKFCK----EAKFVDALKLKGTMELSGVKLDVVSYNVLISGLCA----NGDVMPAFELYEEMKHKG 1011 (1211)
Q Consensus       953 ~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~g 1011 (1211)
                      +.+|..    ..++++|...|+...+.|   +..+.+.|+..|..    ..+.++|..++++..+.|
T Consensus       325 g~~y~~G~g~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g  388 (452)
T 3e4b_A          325 GQIYRRGYLGKVYPQKALDHLLTAARNG---QNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQD  388 (452)
T ss_dssp             HHHHHTTTTSSCCHHHHHHHHHHHHTTT---CTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTC
T ss_pred             HHHHHCCCCCCcCHHHHHHHHHHHHhhC---hHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCC
Confidence            555544    225555555555443322   23344555555442    235555555555554433

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.67  E-value=5.6e-15  Score=159.48  Aligned_cols=224  Identities=11%  Similarity=0.034  Sum_probs=196.4

Q ss_pred             HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHHHHHCCCC--CC----hhhH
Q 000951          771 KLTCHSLILGFCETGMLEVGFKFLKKMIAEGTMVDCFTFNVLMRKCCEAGEMGKAFDLFNIMNMLGVV--PD----TNTQ  844 (1211)
Q Consensus       771 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~----~~~~  844 (1211)
                      ...+..++..+...|++++|+.+++++++..  .+..++..++.+|...|++++|++.|+++.+....  ++    ...|
T Consensus         5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~   82 (258)
T 3uq3_A            5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSF   82 (258)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence            3467778899999999999999999999976  77889999999999999999999999999763311  12    5789


Q ss_pred             HHHHHHHHhhcchhhHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCchHHHHHHHHHHHhc
Q 000951          845 DAIIMGLKRIAAFQESHFVLRGMAEKGLTPKCTQYITLINGMCRVGNFQGAFKLKDEMEALGISSSDVAESAMVRGLAHC  924 (1211)
Q Consensus       845 ~~l~~~~~~~g~~~eA~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  924 (1211)
                      ..++..|...|++++|+..|+++++  +.|+.       ..+...|++++|...++++.... +.+..++..++.++...
T Consensus        83 ~~l~~~~~~~~~~~~A~~~~~~a~~--~~~~~-------~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~  152 (258)
T 3uq3_A           83 ARIGNAYHKLGDLKKTIEYYQKSLT--EHRTA-------DILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFTK  152 (258)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHH--HCCCH-------HHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHcccHHHHHHHHHHHHh--cCchh-------HHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHh
Confidence            9999999999999999999999999  66764       34566788999999999998763 55677889999999999


Q ss_pred             CCHHHHHHHHHHHHhCCcccCHHHHHHHHHHhhhhCCHHHHHHHHHHHHhcCCCCc-hHHHHHHHHHHHhCCChhHHHHH
Q 000951          925 GKVEEAMLVLNRMLRMRLVPTIATFTTLIHKFCKEAKFVDALKLKGTMELSGVKLD-VVSYNVLISGLCANGDVMPAFEL 1003 (1211)
Q Consensus       925 g~~~eA~~~~~~~~~~~~~p~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~ 1003 (1211)
                      |++++|+..|+++++..+. +..+|..++.++...|++++|+..++.....  .|+ ...+..++.+|...|++++|.+.
T Consensus       153 ~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~  229 (258)
T 3uq3_A          153 SDWPNAVKAYTEMIKRAPE-DARGYSNRAAALAKLMSFPEAIADCNKAIEK--DPNFVRAYIRKATAQIAVKEYASALET  229 (258)
T ss_dssp             TCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             cCHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence            9999999999999998766 8899999999999999999999999887766  675 45889999999999999999999


Q ss_pred             HHHHHH
Q 000951         1004 YEEMKH 1009 (1211)
Q Consensus      1004 ~~~~~~ 1009 (1211)
                      +++..+
T Consensus       230 ~~~a~~  235 (258)
T 3uq3_A          230 LDAART  235 (258)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            999876

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.65  E-value=8.6e-15  Score=159.58  Aligned_cols=60  Identities=8%  Similarity=-0.019  Sum_probs=23.7

Q ss_pred             HHHHHHHHHhcCcHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhcchhhHHHHHHHHHH
Q 000951          809 FNVLMRKCCEAGEMGKAFDLFNIMNMLGVVPDTNTQDAIIMGLKRIAAFQESHFVLRGMAE  869 (1211)
Q Consensus       809 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~  869 (1211)
                      +..++.+|...|++++|++.|+++.+.. +.+...|..++..|...|++++|+..|+++++
T Consensus        77 ~~~lg~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~  136 (272)
T 3u4t_A           77 FEYYGKILMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIR  136 (272)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCC
T ss_pred             HHHHHHHHHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhh
Confidence            3334444444444444444444443321 11233344444444444444444444444433

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=99.64  E-value=1e-14  Score=170.92  Aligned_cols=187  Identities=10%  Similarity=-0.020  Sum_probs=105.6

Q ss_pred             HHHHHHHHHHhcC---ChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhc----CcHHHHHHHHHHHHHCCCCCChhhHH
Q 000951          773 TCHSLILGFCETG---MLEVGFKFLKKMIAEGTMVDCFTFNVLMRKCCEA----GEMGKAFDLFNIMNMLGVVPDTNTQD  845 (1211)
Q Consensus       773 ~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~A~~~~~~~~~~~~~~~~~~~~  845 (1211)
                      ++..+...|...|   ++++|++.|+++.+.| +++...+..|+.+|...    +++++|+++|+++.    +.++..+.
T Consensus       178 a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa----~g~~~a~~  252 (452)
T 3e4b_A          178 CYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA----PGYPASWV  252 (452)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG----GGSTHHHH
T ss_pred             HHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc----CCCHHHHH
Confidence            4445555555555   5566666666665543 22333334555555433    45666666666654    23455555


Q ss_pred             HHHHH-H--HhhcchhhHHHHHHHHHHcCCCCChhHHHHHHHHHHhcC-----ChhhHHHHHHHHHHcCCCCchHHHHHH
Q 000951          846 AIIMG-L--KRIAAFQESHFVLRGMAEKGLTPKCTQYITLINGMCRVG-----NFQGAFKLKDEMEALGISSSDVAESAM  917 (1211)
Q Consensus       846 ~l~~~-~--~~~g~~~eA~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g-----~~~eA~~~~~~~~~~~~~~~~~~~~~l  917 (1211)
                      .|+.. |  ...+++++|+.+|+++.+.|   +..++..|+.+|. .|     ++++|++.|+++.    +.+..++..+
T Consensus       253 ~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa----~g~~~A~~~L  324 (452)
T 3e4b_A          253 SLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV----GREVAADYYL  324 (452)
T ss_dssp             HHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT----TTCHHHHHHH
T ss_pred             HHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh----CCCHHHHHHH
Confidence            55555 3  34556666666666666533   3455556666555 33     6666666666665    3345566666


Q ss_pred             HHHHHh----cCCHHHHHHHHHHHHhCCcccCHHHHHHHHHHhhh----hCCHHHHHHHHHHHHhc
Q 000951          918 VRGLAH----CGKVEEAMLVLNRMLRMRLVPTIATFTTLIHKFCK----EAKFVDALKLKGTMELS  975 (1211)
Q Consensus       918 ~~~~~~----~g~~~eA~~~~~~~~~~~~~p~~~~~~~L~~~~~~----~g~~~~A~~~~~~~~~~  975 (1211)
                      +.+|..    ..++++|...|+++.+.+   ++.++..|+.+|..    ..++++|...|+...+.
T Consensus       325 g~~y~~G~g~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~  387 (452)
T 3e4b_A          325 GQIYRRGYLGKVYPQKALDHLLTAARNG---QNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQ  387 (452)
T ss_dssp             HHHHHTTTTSSCCHHHHHHHHHHHHTTT---CTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTT
T ss_pred             HHHHHCCCCCCcCHHHHHHHHHHHHhhC---hHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHC
Confidence            666654    236677777777766654   34455666666653    34667777766655544

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.64  E-value=1.8e-13  Score=149.01  Aligned_cols=222  Identities=10%  Similarity=-0.037  Sum_probs=112.4

Q ss_pred             CHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCCCHhhHH
Q 000951          735 SLATYNILLHGYSKKKDLLMCSMLLNTMKMEGLLPDKLTCHSLILGFCE----TGMLEVGFKFLKKMIAEGTMVDCFTFN  810 (1211)
Q Consensus       735 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~  810 (1211)
                      ++.++..++..|...|++++|+..|+++.+.   .+..++..+...|..    .+++++|+..++++.+.+   +...+.
T Consensus         5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~   78 (273)
T 1ouv_A            5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH   78 (273)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred             ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence            4445555555555555555555555555551   133344445555555    555555555555555532   344555


Q ss_pred             HHHHHHHh----cCcHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHh----hcchhhHHHHHHHHHHcCCCCChhHHHHH
Q 000951          811 VLMRKCCE----AGEMGKAFDLFNIMNMLGVVPDTNTQDAIIMGLKR----IAAFQESHFVLRGMAEKGLTPKCTQYITL  882 (1211)
Q Consensus       811 ~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~eA~~~~~~~~~~g~~p~~~~~~~l  882 (1211)
                      .++.+|..    .+++++|++.|+++.+.+   +...+..++..|..    .+++++|+.+|+++++.+   +..++..+
T Consensus        79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l  152 (273)
T 1ouv_A           79 LLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTIL  152 (273)
T ss_dssp             HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred             HHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHH
Confidence            55555555    555555555555555432   44455555555555    555555555555555422   23344445


Q ss_pred             HHHHHh----cCChhhHHHHHHHHHHcCCCCchHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCcccCHHHHHHHHH
Q 000951          883 INGMCR----VGNFQGAFKLKDEMEALGISSSDVAESAMVRGLAH----CGKVEEAMLVLNRMLRMRLVPTIATFTTLIH  954 (1211)
Q Consensus       883 ~~~~~~----~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~eA~~~~~~~~~~~~~p~~~~~~~L~~  954 (1211)
                      +.++..    .+++++|+..|+++.+.+   +..++..++.+|..    .+++++|++.|+++++.+   +..++..|+.
T Consensus       153 g~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~~  226 (273)
T 1ouv_A          153 GSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGA  226 (273)
T ss_dssp             HHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred             HHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHHHHH
Confidence            555544    455555555555554432   23444445555555    555555555555555443   2334445555


Q ss_pred             Hhhh----hCCHHHHHHHHHHHHh
Q 000951          955 KFCK----EAKFVDALKLKGTMEL  974 (1211)
Q Consensus       955 ~~~~----~g~~~~A~~~~~~~~~  974 (1211)
                      +|..    .|++++|+..|+...+
T Consensus       227 ~~~~g~~~~~~~~~A~~~~~~a~~  250 (273)
T 1ouv_A          227 MQYNGEGVTRNEKQAIENFKKGCK  250 (273)
T ss_dssp             HHHTTSSSSCCSTTHHHHHHHHHH
T ss_pred             HHHcCCCcccCHHHHHHHHHHHHH
Confidence            5554    4555555555444433

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.63  E-value=2.3e-14  Score=156.18  Aligned_cols=243  Identities=8%  Similarity=-0.073  Sum_probs=197.9

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHHHHHCCCCCC--hhhHHHHHHH
Q 000951          773 TCHSLILGFCETGMLEVGFKFLKKMIAEGTMVDCFTFNVLMRKCCEAGEMGKAFDLFNIMNMLGVVPD--TNTQDAIIMG  850 (1211)
Q Consensus       773 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~  850 (1211)
                      .+...+..+...|++++|+..++++++.. +.+...+..++.+|...|++++|++.|+++.+....++  ...|..++..
T Consensus         5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~   83 (272)
T 3u4t_A            5 VEFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKI   83 (272)
T ss_dssp             CHHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHH
Confidence            34456778888999999999999998853 23455888899999999999999999999987332222  2348999999


Q ss_pred             HHhhcchhhHHHHHHHHHHcCCCCC-hhHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHH
Q 000951          851 LKRIAAFQESHFVLRGMAEKGLTPK-CTQYITLINGMCRVGNFQGAFKLKDEMEALGISSSDVAESAMVRGLAHCGKVEE  929 (1211)
Q Consensus       851 ~~~~g~~~eA~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~e  929 (1211)
                      |...|++++|+..|+++++  ..|+ ..++..++.++...|++++|+..|+++++. .+.+..++..++..+...+++++
T Consensus        84 ~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~-~~~~~~~~~~l~~~~~~~~~~~~  160 (272)
T 3u4t_A           84 LMKKGQDSLAIQQYQAAVD--RDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRP-TTTDPKVFYELGQAYYYNKEYVK  160 (272)
T ss_dssp             HHHTTCHHHHHHHHHHHHH--HSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCS-SCCCHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHcccHHHHHHHHHHHHh--cCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhc-CCCcHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999  7775 488999999999999999999999999876 46677888889844445569999


Q ss_pred             HHHHHHHHHhCCcccCHHHHHHHHHHhhhhCC---HHHHHHHHHHHHhcC-CCCch------HHHHHHHHHHHhCCChhH
Q 000951          930 AMLVLNRMLRMRLVPTIATFTTLIHKFCKEAK---FVDALKLKGTMELSG-VKLDV------VSYNVLISGLCANGDVMP  999 (1211)
Q Consensus       930 A~~~~~~~~~~~~~p~~~~~~~L~~~~~~~g~---~~~A~~~~~~~~~~~-~~p~~------~~~~~l~~~~~~~g~~~~  999 (1211)
                      |++.|+++++..|. +...+..++.++...|+   +++|+..++...... ..|+.      ..|..++..|...|++++
T Consensus       161 A~~~~~~a~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  239 (272)
T 3u4t_A          161 ADSSFVKVLELKPN-IYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVK  239 (272)
T ss_dssp             HHHHHHHHHHHSTT-CHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHhCcc-chHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHH
Confidence            99999999998766 78899999999999998   888999887665442 12442      467889999999999999


Q ss_pred             HHHHHHHHHHcCCccCh-hhHHHH
Q 000951         1000 AFELYEEMKHKGLCPNS-TTYSVL 1022 (1211)
Q Consensus      1000 a~~~~~~~~~~g~~p~~-~~~~~l 1022 (1211)
                      |.+.+++..+  +.|+. ..+..+
T Consensus       240 A~~~~~~al~--~~p~~~~a~~~l  261 (272)
T 3u4t_A          240 ADAAWKNILA--LDPTNKKAIDGL  261 (272)
T ss_dssp             HHHHHHHHHH--HCTTCHHHHHHH
T ss_pred             HHHHHHHHHh--cCccHHHHHHHh
Confidence            9999999977  45665 444444

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.62  E-value=2.9e-13  Score=147.41  Aligned_cols=224  Identities=9%  Similarity=-0.059  Sum_probs=199.1

Q ss_pred             CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHh----cCcHHHHHHHHHHHHHCCCCCChhhHH
Q 000951          770 DKLTCHSLILGFCETGMLEVGFKFLKKMIAEGTMVDCFTFNVLMRKCCE----AGEMGKAFDLFNIMNMLGVVPDTNTQD  845 (1211)
Q Consensus       770 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~  845 (1211)
                      +..++..+...|...|++++|++.|+++.+.   .+...+..++.+|..    .+++++|++.|+++.+.+   +...+.
T Consensus         5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~   78 (273)
T 1ouv_A            5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH   78 (273)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred             ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence            5567778889999999999999999999983   356788889999999    999999999999999864   788999


Q ss_pred             HHHHHHHh----hcchhhHHHHHHHHHHcCCCCChhHHHHHHHHHHh----cCChhhHHHHHHHHHHcCCCCchHHHHHH
Q 000951          846 AIIMGLKR----IAAFQESHFVLRGMAEKGLTPKCTQYITLINGMCR----VGNFQGAFKLKDEMEALGISSSDVAESAM  917 (1211)
Q Consensus       846 ~l~~~~~~----~g~~~eA~~~~~~~~~~g~~p~~~~~~~l~~~~~~----~g~~~eA~~~~~~~~~~~~~~~~~~~~~l  917 (1211)
                      .++..|..    .+++++|+.+|+++++.+   +..++..++.+|..    .+++++|++.|+++.+.+   +..++..+
T Consensus        79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l  152 (273)
T 1ouv_A           79 LLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTIL  152 (273)
T ss_dssp             HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred             HHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHH
Confidence            99999999    999999999999999853   66889999999999    999999999999999875   56788889


Q ss_pred             HHHHHh----cCCHHHHHHHHHHHHhCCcccCHHHHHHHHHHhhh----hCCHHHHHHHHHHHHhcCCCCchHHHHHHHH
Q 000951          918 VRGLAH----CGKVEEAMLVLNRMLRMRLVPTIATFTTLIHKFCK----EAKFVDALKLKGTMELSGVKLDVVSYNVLIS  989 (1211)
Q Consensus       918 ~~~~~~----~g~~~eA~~~~~~~~~~~~~p~~~~~~~L~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~  989 (1211)
                      +.+|..    .+++++|+..|+++++.+   ++.++..++.+|..    .|++++|+..|+...+.  .| ...+..++.
T Consensus       153 g~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~--~~-~~a~~~l~~  226 (273)
T 1ouv_A          153 GSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACEL--EN-GGGCFNLGA  226 (273)
T ss_dssp             HHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHT--TC-HHHHHHHHH
T ss_pred             HHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhC--CC-HHHHHHHHH
Confidence            999998    999999999999999975   67889999999999    99999999999877765  33 568889999


Q ss_pred             HHHh----CCChhHHHHHHHHHHHcC
Q 000951          990 GLCA----NGDVMPAFELYEEMKHKG 1011 (1211)
Q Consensus       990 ~~~~----~g~~~~a~~~~~~~~~~g 1011 (1211)
                      +|..    .+++++|.+.+++..+.+
T Consensus       227 ~~~~g~~~~~~~~~A~~~~~~a~~~~  252 (273)
T 1ouv_A          227 MQYNGEGVTRNEKQAIENFKKGCKLG  252 (273)
T ss_dssp             HHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred             HHHcCCCcccCHHHHHHHHHHHHHcC
Confidence            9998    999999999999987743

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=99.59  E-value=2.7e-14  Score=165.96  Aligned_cols=296  Identities=11%  Similarity=-0.020  Sum_probs=164.6

Q ss_pred             HHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCC-----HHHHHHHHHHHHhcCChHHHHHHHHHHHHc----CCCCC-
Q 000951          736 LATYNILLHGYSKKKDLLMCSMLLNTMKMEGLLPD-----KLTCHSLILGFCETGMLEVGFKFLKKMIAE----GTMVD-  805 (1211)
Q Consensus       736 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~-  805 (1211)
                      ...+..++..+...|++++|+..|+++++.  .|+     ...+..++..|...|++++|+..+++++..    +..|. 
T Consensus         9 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~   86 (406)
T 3sf4_A            9 CLELALEGERLCKSGDCRAGVSFFEAAVQV--GTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGE   86 (406)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHH
Confidence            334444445555555555555555555542  221     123444445555555555555555554432    10111 


Q ss_pred             HhhHHHHHHHHHhcCcHHHHHHHHHHHHHCCCC-CC----hhhHHHHHHHHHhhcc--------------------hhhH
Q 000951          806 CFTFNVLMRKCCEAGEMGKAFDLFNIMNMLGVV-PD----TNTQDAIIMGLKRIAA--------------------FQES  860 (1211)
Q Consensus       806 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~--------------------~~eA  860 (1211)
                      ..++..++.+|...|++++|++.++++.+.... ++    ..++..++..|...|+                    +++|
T Consensus        87 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A  166 (406)
T 3sf4_A           87 AKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAA  166 (406)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHH
Confidence            334455555555566666666555555431100 11    3355666666666666                    6666


Q ss_pred             HHHHHHHHHc----CCCCC-hhHHHHHHHHHHhcCChhhHHHHHHHHHHcCC-CCc----hHHHHHHHHHHHhcCCHHHH
Q 000951          861 HFVLRGMAEK----GLTPK-CTQYITLINGMCRVGNFQGAFKLKDEMEALGI-SSS----DVAESAMVRGLAHCGKVEEA  930 (1211)
Q Consensus       861 ~~~~~~~~~~----g~~p~-~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~g~~~eA  930 (1211)
                      +..++++++.    +..|. ..++..++.++...|++++|...++++++... .++    ..++..++.++...|++++|
T Consensus       167 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A  246 (406)
T 3sf4_A          167 VDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETA  246 (406)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHH
Confidence            6666665541    11121 24667777777777777777777777753210 111    22566777778888888888


Q ss_pred             HHHHHHHHhCCccc-----CHHHHHHHHHHhhhhCCHHHHHHHHHHHHhc----CCCCc-hHHHHHHHHHHHhCCChhHH
Q 000951          931 MLVLNRMLRMRLVP-----TIATFTTLIHKFCKEAKFVDALKLKGTMELS----GVKLD-VVSYNVLISGLCANGDVMPA 1000 (1211)
Q Consensus       931 ~~~~~~~~~~~~~p-----~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~----~~~p~-~~~~~~l~~~~~~~g~~~~a 1000 (1211)
                      +..++++++..+..     ...++..++.+|...|++++|+..++.....    +..+. ...+..++.+|...|++++|
T Consensus       247 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A  326 (406)
T 3sf4_A          247 SEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQA  326 (406)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred             HHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHH
Confidence            88887777643221     1556777888888888888888877654432    11111 23567777788888888888


Q ss_pred             HHHHHHHHH----cCCccCh-hhHHHHHHHHHhcccch
Q 000951         1001 FELYEEMKH----KGLCPNS-TTYSVLIDAISKKENNL 1033 (1211)
Q Consensus      1001 ~~~~~~~~~----~g~~p~~-~~~~~l~~~~~~~~~~~ 1033 (1211)
                      .+.+++..+    .+..+.. .++..+...+...|+..
T Consensus       327 ~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~  364 (406)
T 3sf4_A          327 MHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSY  364 (406)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTS
T ss_pred             HHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhH
Confidence            888777554    2222322 45555555555555443

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.59  E-value=5.1e-14  Score=153.63  Aligned_cols=246  Identities=9%  Similarity=-0.139  Sum_probs=119.5

Q ss_pred             cCChHHHHHHHHHHHHCCC--CC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCcHHHH
Q 000951          749 KKDLLMCSMLLNTMKMEGL--LP-DKLTCHSLILGFCETGMLEVGFKFLKKMIAEGTMVDCFTFNVLMRKCCEAGEMGKA  825 (1211)
Q Consensus       749 ~g~~~~A~~~~~~~~~~g~--~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A  825 (1211)
                      .|++++|+..|+++++...  .| +..++..++..+...|++++|+..++++++.. +.+..++..++.+|...|++++|
T Consensus        18 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A   96 (275)
T 1xnf_A           18 TLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAA   96 (275)
T ss_dssp             CHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHH
T ss_pred             cchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHHH
Confidence            3455555555555554311  11 22344445555555555555555555555532 22344555555555555555555


Q ss_pred             HHHHHHHHHCCCCCChhhHHHHHHHHHhhcchhhHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChhhHHHHHHHHHHc
Q 000951          826 FDLFNIMNMLGVVPDTNTQDAIIMGLKRIAAFQESHFVLRGMAEKGLTPKCTQYITLINGMCRVGNFQGAFKLKDEMEAL  905 (1211)
Q Consensus       826 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~  905 (1211)
                      ++.|+++++.. +.+...|..++..|...|++++|+..|+++++  ..|+..........+...|++++|...++++...
T Consensus        97 ~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~  173 (275)
T 1xnf_A           97 YEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQ--DDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK  173 (275)
T ss_dssp             HHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence            55555555432 12345555555555555555555555555555  4444332333333334455666666666555543


Q ss_pred             CCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCccc---CHHHHHHHHHHhhhhCCHHHHHHHHHHHHhcCCCCchH
Q 000951          906 GISSSDVAESAMVRGLAHCGKVEEAMLVLNRMLRMRLVP---TIATFTTLIHKFCKEAKFVDALKLKGTMELSGVKLDVV  982 (1211)
Q Consensus       906 ~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~p---~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~  982 (1211)
                      . +++...+ .++..+...++.++|++.++++++..+..   +..+|..++.+|...|++++|...|+.....  .|+..
T Consensus       174 ~-~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~  249 (275)
T 1xnf_A          174 S-DKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN--NVHNF  249 (275)
T ss_dssp             S-CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CCTTC
T ss_pred             C-CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CchhH
Confidence            2 2222222 24444555555566666666555543221   1455566666666666666666665544433  44322


Q ss_pred             HHHHHHHHHHhCCChhHHHHHH
Q 000951          983 SYNVLISGLCANGDVMPAFELY 1004 (1211)
Q Consensus       983 ~~~~l~~~~~~~g~~~~a~~~~ 1004 (1211)
                        ...+.++...|++++|++.+
T Consensus       250 --~~~~~~~~~l~~~~~a~~~~  269 (275)
T 1xnf_A          250 --VEHRYALLELSLLGQDQDDL  269 (275)
T ss_dssp             --HHHHHHHHHHHHHHHC----
T ss_pred             --HHHHHHHHHHHHHHhhHHHH
Confidence              11133444445555554443

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=99.58  E-value=4.6e-14  Score=163.99  Aligned_cols=294  Identities=11%  Similarity=-0.006  Sum_probs=186.2

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-C----HHHHHHHHHHHHccCChHHHHHHHHHHHHC----CCCCC-HHH
Q 000951          704 FNAVMDGFSRMGNMMMANDLLSTMRSRKLCP-S----LATYNILLHGYSKKKDLLMCSMLLNTMKME----GLLPD-KLT  773 (1211)
Q Consensus       704 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p-~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----g~~p~-~~~  773 (1211)
                      +......+...|++++|...|+++.+.  .| +    ...|..++..|...|++++|+..++++++.    +..|. ..+
T Consensus        12 l~~~g~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~   89 (406)
T 3sf4_A           12 LALEGERLCKSGDCRAGVSFFEAAVQV--GTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKA   89 (406)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHH
Confidence            333444444455555555555554432  12 2    234455555555555555555555554331    11111 234


Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHHcCCC-CC----HhhHHHHHHHHHhcCc--------------------HHHHHHH
Q 000951          774 CHSLILGFCETGMLEVGFKFLKKMIAEGTM-VD----CFTFNVLMRKCCEAGE--------------------MGKAFDL  828 (1211)
Q Consensus       774 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~--------------------~~~A~~~  828 (1211)
                      +..++..|...|++++|+..++++++.... ++    ..++..++.+|...|+                    +++|++.
T Consensus        90 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~  169 (406)
T 3sf4_A           90 SGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDF  169 (406)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHH
Confidence            455556666666666666666666553100 11    3356667777777777                    7777777


Q ss_pred             HHHHHHC----CCCC-ChhhHHHHHHHHHhhcchhhHHHHHHHHHHcC-CCCC----hhHHHHHHHHHHhcCChhhHHHH
Q 000951          829 FNIMNML----GVVP-DTNTQDAIIMGLKRIAAFQESHFVLRGMAEKG-LTPK----CTQYITLINGMCRVGNFQGAFKL  898 (1211)
Q Consensus       829 ~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~g-~~p~----~~~~~~l~~~~~~~g~~~eA~~~  898 (1211)
                      |+++.+.    +..+ ...++..++..|...|++++|+..|+++++.. ..++    ..++..++.++...|++++|...
T Consensus       170 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~  249 (406)
T 3sf4_A          170 YEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEY  249 (406)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHH
Confidence            7766431    1111 14467788888888899999998888888621 1122    14788899999999999999999


Q ss_pred             HHHHHHcC----CCC-chHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCccc-----CHHHHHHHHHHhhhhCCHHHHHHH
Q 000951          899 KDEMEALG----ISS-SDVAESAMVRGLAHCGKVEEAMLVLNRMLRMRLVP-----TIATFTTLIHKFCKEAKFVDALKL  968 (1211)
Q Consensus       899 ~~~~~~~~----~~~-~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~p-----~~~~~~~L~~~~~~~g~~~~A~~~  968 (1211)
                      ++++++..    .++ ...++..++.++...|++++|+..|+++++.....     ...++..++.+|...|++++|...
T Consensus       250 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~  329 (406)
T 3sf4_A          250 YKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHF  329 (406)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred             HHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence            99987431    111 14467888999999999999999999998753221     266889999999999999999998


Q ss_pred             HHHHHhc----CCCCc-hHHHHHHHHHHHhCCChhH
Q 000951          969 KGTMELS----GVKLD-VVSYNVLISGLCANGDVMP  999 (1211)
Q Consensus       969 ~~~~~~~----~~~p~-~~~~~~l~~~~~~~g~~~~  999 (1211)
                      ++.....    +..+. ..++..++.+|...|+...
T Consensus       330 ~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~  365 (406)
T 3sf4_A          330 AEKHLEISREVGDKSGELTARLNLSDLQMVLGLSYS  365 (406)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred             HHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhHH
Confidence            8765433    22222 2366788888888886644

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.58  E-value=5.1e-14  Score=153.63  Aligned_cols=246  Identities=7%  Similarity=-0.098  Sum_probs=182.3

Q ss_pred             hcCChHHHHHHHHHHHHCCC--CC-CHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChH
Q 000951          713 RMGNMMMANDLLSTMRSRKL--CP-SLATYNILLHGYSKKKDLLMCSMLLNTMKMEGLLP-DKLTCHSLILGFCETGMLE  788 (1211)
Q Consensus       713 ~~g~~~~A~~~~~~~~~~~~--~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~  788 (1211)
                      ..|++++|...|+++.+...  +| +..+|..++..|...|++++|+..|+++++.  .| +..++..++.+|...|+++
T Consensus        17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~la~~~~~~~~~~   94 (275)
T 1xnf_A           17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAI--RPDMPEVFNYLGIYLTQAGNFD   94 (275)
T ss_dssp             CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHH
T ss_pred             ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHccCHH
Confidence            35677888888888775421  12 4677888888888888888888888888874  44 5667778888888888888


Q ss_pred             HHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhcchhhHHHHHHHHH
Q 000951          789 VGFKFLKKMIAEGTMVDCFTFNVLMRKCCEAGEMGKAFDLFNIMNMLGVVPDTNTQDAIIMGLKRIAAFQESHFVLRGMA  868 (1211)
Q Consensus       789 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~  868 (1211)
                      +|+..++++++.. +.+..++..++.+|...|++++|++.|+++.+.  .|+..........+...|++++|+..+++++
T Consensus        95 ~A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~  171 (275)
T 1xnf_A           95 AAYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHF  171 (275)
T ss_dssp             HHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence            8888888888852 234678888888888999999999999888874  3444444444455567789999999998888


Q ss_pred             HcCCCCChhHHHHHHHHHHhcCChhhHHHHHHHHHHcCCC---CchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCcccC
Q 000951          869 EKGLTPKCTQYITLINGMCRVGNFQGAFKLKDEMEALGIS---SSDVAESAMVRGLAHCGKVEEAMLVLNRMLRMRLVPT  945 (1211)
Q Consensus       869 ~~g~~p~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~p~  945 (1211)
                      .  ..|+......++..+...++.++|+..++++.+....   .+...+..++.++...|++++|...|+++++.+|. +
T Consensus       172 ~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~  248 (275)
T 1xnf_A          172 E--KSDKEQWGWNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVH-N  248 (275)
T ss_dssp             H--HSCCCSTHHHHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCT-T
T ss_pred             h--cCCcchHHHHHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCch-h
Confidence            7  4454433445777788888889999999988643211   12567889999999999999999999999998754 3


Q ss_pred             HHHHHHHHHHhhhhCCHHHHHHHH
Q 000951          946 IATFTTLIHKFCKEAKFVDALKLK  969 (1211)
Q Consensus       946 ~~~~~~L~~~~~~~g~~~~A~~~~  969 (1211)
                         +...+.++...|++++|++.+
T Consensus       249 ---~~~~~~~~~~l~~~~~a~~~~  269 (275)
T 1xnf_A          249 ---FVEHRYALLELSLLGQDQDDL  269 (275)
T ss_dssp             ---CHHHHHHHHHHHHHHHC----
T ss_pred             ---HHHHHHHHHHHHHHHhhHHHH
Confidence               334466788899999998875

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=99.57  E-value=4.4e-14  Score=164.55  Aligned_cols=269  Identities=12%  Similarity=0.022  Sum_probs=178.7

Q ss_pred             HHHHHHHHHccCChHHHHHHHHHHHHCCCCCC-H----HHHHHHHHHHHhcCChHHHHHHHHHHHHc----CC-CCCHhh
Q 000951          739 YNILLHGYSKKKDLLMCSMLLNTMKMEGLLPD-K----LTCHSLILGFCETGMLEVGFKFLKKMIAE----GT-MVDCFT  808 (1211)
Q Consensus       739 ~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~-~~~~~~  808 (1211)
                      +..++..+...|++++|+..|+++++.  .|+ .    ..+..++..|...|++++|+..++++++.    +. +....+
T Consensus        51 l~~~g~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~  128 (411)
T 4a1s_A           51 LALEGERLCNAGDCRAGVAFFQAAIQA--GTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKS  128 (411)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHhCcHHHHHHHHHHHHHh--cccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHH
Confidence            334455556666666666666666653  232 1    24555556666666666666666665542    00 112345


Q ss_pred             HHHHHHHHHhcCcHHHHHHHHHHHHHCC-----CCCChhhHHHHHHHHHhhcc-----------------hhhHHHHHHH
Q 000951          809 FNVLMRKCCEAGEMGKAFDLFNIMNMLG-----VVPDTNTQDAIIMGLKRIAA-----------------FQESHFVLRG  866 (1211)
Q Consensus       809 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~g~-----------------~~eA~~~~~~  866 (1211)
                      +..++.+|...|++++|++.|+++.+..     ......++..++..|...|+                 +++|+..+++
T Consensus       129 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~  208 (411)
T 4a1s_A          129 SGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQE  208 (411)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHH
Confidence            5666666777777777777766664310     01124466777777777777                 7777777777


Q ss_pred             HHHc----CCCCC-hhHHHHHHHHHHhcCChhhHHHHHHHHHHcCCC-Cc----hHHHHHHHHHHHhcCCHHHHHHHHHH
Q 000951          867 MAEK----GLTPK-CTQYITLINGMCRVGNFQGAFKLKDEMEALGIS-SS----DVAESAMVRGLAHCGKVEEAMLVLNR  936 (1211)
Q Consensus       867 ~~~~----g~~p~-~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~~~eA~~~~~~  936 (1211)
                      +++.    +..|. ..++..++.++...|++++|+..|+++++.... ++    ..++..++.+|...|++++|+..|++
T Consensus       209 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  288 (411)
T 4a1s_A          209 NLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKR  288 (411)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHH
Confidence            6641    11122 257888888999999999999999988653110 11    22677889999999999999999999


Q ss_pred             HHhCCccc-----CHHHHHHHHHHhhhhCCHHHHHHHHHHHHhcC----CCCc-hHHHHHHHHHHHhCCChhHHHHHHHH
Q 000951          937 MLRMRLVP-----TIATFTTLIHKFCKEAKFVDALKLKGTMELSG----VKLD-VVSYNVLISGLCANGDVMPAFELYEE 1006 (1211)
Q Consensus       937 ~~~~~~~p-----~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~----~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~ 1006 (1211)
                      +++..+..     ...++..++.+|...|++++|+..++......    ..+. ...+..++.+|...|++++|.+.+++
T Consensus       289 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  368 (411)
T 4a1s_A          289 TLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQ  368 (411)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence            88754321     25788899999999999999999888655431    1111 23678889999999999999999998


Q ss_pred             HHH
Q 000951         1007 MKH 1009 (1211)
Q Consensus      1007 ~~~ 1009 (1211)
                      ..+
T Consensus       369 al~  371 (411)
T 4a1s_A          369 HLQ  371 (411)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            866

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.57  E-value=4.6e-13  Score=143.87  Aligned_cols=198  Identities=12%  Similarity=-0.077  Sum_probs=99.2

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHh
Q 000951          774 CHSLILGFCETGMLEVGFKFLKKMIAEGTMVDCFTFNVLMRKCCEAGEMGKAFDLFNIMNMLGVVPDTNTQDAIIMGLKR  853 (1211)
Q Consensus       774 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~  853 (1211)
                      +..++..+...|++++|+..++++++.. +.+..++..++.+|...|++++|++.|+++.+.. +.+...|..++..|..
T Consensus        40 ~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~  117 (252)
T 2ho1_A           40 YIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFLYE  117 (252)
T ss_dssp             HHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHH
Confidence            3334444444455555555555444431 1233444444455555555555555555544322 1234444445555555


Q ss_pred             hcchhhHHHHHHHHHHcCCCCC-hhHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHH
Q 000951          854 IAAFQESHFVLRGMAEKGLTPK-CTQYITLINGMCRVGNFQGAFKLKDEMEALGISSSDVAESAMVRGLAHCGKVEEAML  932 (1211)
Q Consensus       854 ~g~~~eA~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~  932 (1211)
                      .|++++|+..|+++++.+..|+ ...+..++.++...|++++|...|+++.+.. +.+..++..++.++...|++++|..
T Consensus       118 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~  196 (252)
T 2ho1_A          118 QKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYVPARQ  196 (252)
T ss_dssp             TTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHHHHHH
Confidence            5555555555555544223333 2445555555555555555555555555442 3344455555555555566666666


Q ss_pred             HHHHHHhCCcccCHHHHHHHHHHhhhhCCHHHHHHHHHHHHhc
Q 000951          933 VLNRMLRMRLVPTIATFTTLIHKFCKEAKFVDALKLKGTMELS  975 (1211)
Q Consensus       933 ~~~~~~~~~~~p~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~  975 (1211)
                      .++++++..+. +...+..++.++...|++++|...++.+...
T Consensus       197 ~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~  238 (252)
T 2ho1_A          197 YYDLFAQGGGQ-NARSLLLGIRLAKVFEDRDTAASYGLQLKRL  238 (252)
T ss_dssp             HHHHHHTTSCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhCcC-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence            66655554433 4555555555555566666666555555444

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.56  E-value=7.4e-14  Score=149.10  Aligned_cols=162  Identities=10%  Similarity=0.027  Sum_probs=70.9

Q ss_pred             hHHHHHHHHHhcCcHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhcchhhHHHHHHHHHHcCCCCC-hhHHHHHHHHH
Q 000951          808 TFNVLMRKCCEAGEMGKAFDLFNIMNMLGVVPDTNTQDAIIMGLKRIAAFQESHFVLRGMAEKGLTPK-CTQYITLINGM  886 (1211)
Q Consensus       808 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~g~~p~-~~~~~~l~~~~  886 (1211)
                      .+..++.+|...|++++|++.|+++.+.. +.+...+..++..|...|++++|+..|+++++  ..|+ ...+..++.++
T Consensus        59 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~~a~~~  135 (243)
T 2q7f_A           59 PYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNVYVVKEMYKEAKDMFEKALR--AGMENGDLFYMLGTVL  135 (243)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HTCCSHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHHHHHhccHHHHHHHHHHHHH--hCCCCHHHHHHHHHHH
Confidence            33333444444444444444444433321 11233344444444444444444444444443  2232 23344444444


Q ss_pred             HhcCChhhHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCcccCHHHHHHHHHHhhhhCCHHHHH
Q 000951          887 CRVGNFQGAFKLKDEMEALGISSSDVAESAMVRGLAHCGKVEEAMLVLNRMLRMRLVPTIATFTTLIHKFCKEAKFVDAL  966 (1211)
Q Consensus       887 ~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~p~~~~~~~L~~~~~~~g~~~~A~  966 (1211)
                      ...|++++|...++++.+.. +.+..++..++.++...|++++|++.++++++..+. +..+|..++.+|...|++++|.
T Consensus       136 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~  213 (243)
T 2q7f_A          136 VKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPG-HADAFYNAGVTYAYKENREKAL  213 (243)
T ss_dssp             HHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCTTHHH
T ss_pred             HHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHccCHHHHH
Confidence            44444444444444444331 233444444444555555555555555555444332 4444555555555555555555


Q ss_pred             HHHHHHHh
Q 000951          967 KLKGTMEL  974 (1211)
Q Consensus       967 ~~~~~~~~  974 (1211)
                      ..++....
T Consensus       214 ~~~~~~~~  221 (243)
T 2q7f_A          214 EMLDKAID  221 (243)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHc
Confidence            55444433

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.56  E-value=8.8e-14  Score=148.51  Aligned_cols=216  Identities=11%  Similarity=-0.022  Sum_probs=152.7

Q ss_pred             CHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHH
Q 000951          735 SLATYNILLHGYSKKKDLLMCSMLLNTMKMEGLLP-DKLTCHSLILGFCETGMLEVGFKFLKKMIAEGTMVDCFTFNVLM  813 (1211)
Q Consensus       735 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~  813 (1211)
                      ....|..++..+...|++++|+..|+++++  ..| +...+..++..|...|++++|+..++++++.. +.+..++..++
T Consensus        22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~--~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la   98 (243)
T 2q7f_A           22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIE--ENKEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAG   98 (243)
T ss_dssp             --------------------CCTTHHHHHT--TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhCHHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHH
Confidence            456677777778888888888888888877  334 55667777788888888888888888887752 33566777888


Q ss_pred             HHHHhcCcHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhcchhhHHHHHHHHHHcCCCCC-hhHHHHHHHHHHhcCCh
Q 000951          814 RKCCEAGEMGKAFDLFNIMNMLGVVPDTNTQDAIIMGLKRIAAFQESHFVLRGMAEKGLTPK-CTQYITLINGMCRVGNF  892 (1211)
Q Consensus       814 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~  892 (1211)
                      .+|...|++++|++.|+++.+.. +.+...+..++..|...|++++|+..++++++  ..|+ ...+..++.++...|++
T Consensus        99 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~  175 (243)
T 2q7f_A           99 NVYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVE--LNENDTEARFQFGMCLANEGML  175 (243)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCC
T ss_pred             HHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHH--hCCccHHHHHHHHHHHHHcCCH
Confidence            88888888888888888887643 34577788888888888888888888888887  5564 57788888999999999


Q ss_pred             hhHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCcccCHHHHHHHHHHhhh
Q 000951          893 QGAFKLKDEMEALGISSSDVAESAMVRGLAHCGKVEEAMLVLNRMLRMRLVPTIATFTTLIHKFCK  958 (1211)
Q Consensus       893 ~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~p~~~~~~~L~~~~~~  958 (1211)
                      ++|...|+++.+.. +.+..++..++.++...|++++|.+.|+++++..|. +..++..++.....
T Consensus       176 ~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~l~~~  239 (243)
T 2q7f_A          176 DEALSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPD-HMLALHAKKLLGHH  239 (243)
T ss_dssp             HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTT-CHHHHHHHTC----
T ss_pred             HHHHHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcc-hHHHHHHHHHHHhh
Confidence            99999999988763 566778888999999999999999999999988765 77777666554443

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.55  E-value=8.6e-13  Score=138.71  Aligned_cols=195  Identities=10%  Similarity=-0.053  Sum_probs=83.9

Q ss_pred             HHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhh-
Q 000951          776 SLILGFCETGMLEVGFKFLKKMIAEGTMVDCFTFNVLMRKCCEAGEMGKAFDLFNIMNMLGVVPDTNTQDAIIMGLKRI-  854 (1211)
Q Consensus       776 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-  854 (1211)
                      .++..+...|++++|++.++++++.. +.+...+..++.+|...|++++|++.|+++.+.. +.+...+..++..|... 
T Consensus        13 ~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~   90 (225)
T 2vq2_A           13 QLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWFLCGRL   90 (225)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhc
Confidence            33334444444444444444443321 1123333444444444444444444444443321 11233344444444444 


Q ss_pred             cchhhHHHHHHHHHHcCCCCC-hhHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHH
Q 000951          855 AAFQESHFVLRGMAEKGLTPK-CTQYITLINGMCRVGNFQGAFKLKDEMEALGISSSDVAESAMVRGLAHCGKVEEAMLV  933 (1211)
Q Consensus       855 g~~~eA~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~  933 (1211)
                      |++++|+..|+++++.+..|+ ...+..++.++...|++++|...|+++.+.. +.+..++..++.++...|++++|...
T Consensus        91 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~  169 (225)
T 2vq2_A           91 NRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQLGDADYY  169 (225)
T ss_dssp             CCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred             CcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcCCHHHHHHH
Confidence            444444444444443222232 2344444444445555555555555444431 23344444455555555555555555


Q ss_pred             HHHHHhCCcccCHHHHHHHHHHhhhhCCHHHHHHHHHHHH
Q 000951          934 LNRMLRMRLVPTIATFTTLIHKFCKEAKFVDALKLKGTME  973 (1211)
Q Consensus       934 ~~~~~~~~~~p~~~~~~~L~~~~~~~g~~~~A~~~~~~~~  973 (1211)
                      ++++++..+..+...+..++..+...|+.++|...++.+.
T Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~  209 (225)
T 2vq2_A          170 FKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQ  209 (225)
T ss_dssp             HHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence            5555544331144444444444455555555555544443

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.54  E-value=9.6e-13  Score=141.35  Aligned_cols=207  Identities=10%  Similarity=-0.022  Sum_probs=164.6

Q ss_pred             HHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHH
Q 000951          736 LATYNILLHGYSKKKDLLMCSMLLNTMKMEGLLP-DKLTCHSLILGFCETGMLEVGFKFLKKMIAEGTMVDCFTFNVLMR  814 (1211)
Q Consensus       736 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~  814 (1211)
                      ...|..++..+...|++++|+..|+++++.  .| +...+..++..|...|++++|++.++++++.. +.+..++..++.
T Consensus        37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~  113 (252)
T 2ho1_A           37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEI--DPSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGG  113 (252)
T ss_dssp             HHHHHHHHHHHHHTTCTGGGHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHH
Confidence            566777788888888888888888888774  34 55677777888888888888888888888753 235677888888


Q ss_pred             HHHhcCcHHHHHHHHHHHHHCCCCC-ChhhHHHHHHHHHhhcchhhHHHHHHHHHHcCCCCC-hhHHHHHHHHHHhcCCh
Q 000951          815 KCCEAGEMGKAFDLFNIMNMLGVVP-DTNTQDAIIMGLKRIAAFQESHFVLRGMAEKGLTPK-CTQYITLINGMCRVGNF  892 (1211)
Q Consensus       815 ~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~  892 (1211)
                      +|...|++++|++.|+++.+.+..| +...+..++..|...|++++|+..|+++++  ..|+ ...+..++.++...|++
T Consensus       114 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~~~la~~~~~~g~~  191 (252)
T 2ho1_A          114 FLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLR--LNRNQPSVALEMADLLYKEREY  191 (252)
T ss_dssp             HHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCSCCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCcccHHHHHHHHHHHHHcCCH
Confidence            8888889999998888887622334 366788888888899999999999999888  5665 57788899999999999


Q ss_pred             hhHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCcccCHHHH
Q 000951          893 QGAFKLKDEMEALGISSSDVAESAMVRGLAHCGKVEEAMLVLNRMLRMRLVPTIATF  949 (1211)
Q Consensus       893 ~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~p~~~~~  949 (1211)
                      ++|...++++.+. .+.+...+..++.++...|++++|.+.++++++..|. +...+
T Consensus       192 ~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~  246 (252)
T 2ho1_A          192 VPARQYYDLFAQG-GGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPG-SLEYQ  246 (252)
T ss_dssp             HHHHHHHHHHHTT-SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-SHHHH
T ss_pred             HHHHHHHHHHHHh-CcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCC-CHHHH
Confidence            9999999998875 3566777888889999999999999999999987654 54443

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=99.54  E-value=1.5e-13  Score=154.78  Aligned_cols=267  Identities=11%  Similarity=0.006  Sum_probs=161.8

Q ss_pred             HHHHHHHccCChHHHHHHHHHHHHCCCCCC-----HHHHHHHHHHHHhcCChHHHHHHHHHHHHc----CCCC-CHhhHH
Q 000951          741 ILLHGYSKKKDLLMCSMLLNTMKMEGLLPD-----KLTCHSLILGFCETGMLEVGFKFLKKMIAE----GTMV-DCFTFN  810 (1211)
Q Consensus       741 ~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~-~~~~~~  810 (1211)
                      ..+..+...|++++|+..|+++++.  .|+     ...+..++..|...|++++|++.+++++..    +..+ ...++.
T Consensus        10 ~~g~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~   87 (338)
T 3ro2_A           10 LEGERLCKSGDCRAGVSFFEAAVQV--GTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASG   87 (338)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHH--CCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred             HHHHHHHHhccHHHHHHHHHHHHhh--CcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHH
Confidence            3344455555555555555555542  221     123444455555555555555555554432    1011 133455


Q ss_pred             HHHHHHHhcCcHHHHHHHHHHHHHCCC-CCC----hhhHHHHHHHHHhhcc--------------------hhhHHHHHH
Q 000951          811 VLMRKCCEAGEMGKAFDLFNIMNMLGV-VPD----TNTQDAIIMGLKRIAA--------------------FQESHFVLR  865 (1211)
Q Consensus       811 ~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~g~--------------------~~eA~~~~~  865 (1211)
                      .++.+|...|++++|++.++++.+... .++    ..++..++..|...|+                    +++|+..++
T Consensus        88 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~  167 (338)
T 3ro2_A           88 NLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYE  167 (338)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHH
Confidence            555666666666666666665543110 011    2356666666666676                    677777776


Q ss_pred             HHHHc----CCCCC-hhHHHHHHHHHHhcCChhhHHHHHHHHHHcC--CC-C--chHHHHHHHHHHHhcCCHHHHHHHHH
Q 000951          866 GMAEK----GLTPK-CTQYITLINGMCRVGNFQGAFKLKDEMEALG--IS-S--SDVAESAMVRGLAHCGKVEEAMLVLN  935 (1211)
Q Consensus       866 ~~~~~----g~~p~-~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~--~~-~--~~~~~~~l~~~~~~~g~~~eA~~~~~  935 (1211)
                      ++++.    +..|. ..++..++..+...|++++|...++++.+..  .. +  ...++..++.++...|++++|.+.++
T Consensus       168 ~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~  247 (338)
T 3ro2_A          168 ENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYK  247 (338)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            66541    11121 2567778888888888888888888876431  01 1  12267778888888888888888888


Q ss_pred             HHHhCCccc-----CHHHHHHHHHHhhhhCCHHHHHHHHHHHHhc----CCCCc-hHHHHHHHHHHHhCCChhHHHHHHH
Q 000951          936 RMLRMRLVP-----TIATFTTLIHKFCKEAKFVDALKLKGTMELS----GVKLD-VVSYNVLISGLCANGDVMPAFELYE 1005 (1211)
Q Consensus       936 ~~~~~~~~p-----~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~----~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~ 1005 (1211)
                      ++++..+..     ...++..++.++...|++++|...++.....    +..+. ..++..++.+|...|++++|.+.++
T Consensus       248 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  327 (338)
T 3ro2_A          248 KTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAE  327 (338)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred             HHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHH
Confidence            887643221     1567788888899999999998887765433    11111 2266788888889999999999988


Q ss_pred             HHHH
Q 000951         1006 EMKH 1009 (1211)
Q Consensus      1006 ~~~~ 1009 (1211)
                      +..+
T Consensus       328 ~a~~  331 (338)
T 3ro2_A          328 KHLE  331 (338)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            8765

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.54  E-value=4e-13  Score=136.35  Aligned_cols=164  Identities=12%  Similarity=0.028  Sum_probs=88.2

Q ss_pred             HhhHHHHHHHHHhcCcHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhcchhhHHHHHHHHHHcCCCCC-hhHHHHHHH
Q 000951          806 CFTFNVLMRKCCEAGEMGKAFDLFNIMNMLGVVPDTNTQDAIIMGLKRIAAFQESHFVLRGMAEKGLTPK-CTQYITLIN  884 (1211)
Q Consensus       806 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~g~~p~-~~~~~~l~~  884 (1211)
                      ..+|..++.+|...|++++|++.|+++++.. +.+..+|..++.+|.+.|++++|+..+.++..  ..|+ ...+..++.
T Consensus         5 ~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~   81 (184)
T 3vtx_A            5 TTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVV--LDTTSAEAYYILGS   81 (184)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCCCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCchhHHHHHHHHH
Confidence            3455555555555555555555555555432 12344555555555555555555555555554  3443 244555555


Q ss_pred             HHHhcCChhhHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCcccCHHHHHHHHHHhhhhCCHHH
Q 000951          885 GMCRVGNFQGAFKLKDEMEALGISSSDVAESAMVRGLAHCGKVEEAMLVLNRMLRMRLVPTIATFTTLIHKFCKEAKFVD  964 (1211)
Q Consensus       885 ~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~p~~~~~~~L~~~~~~~g~~~~  964 (1211)
                      .+...+++++|...++++.+. .+.+..++..++.++.+.|++++|++.|+++++.+|. ++.+|..+|.+|.+.|++++
T Consensus        82 ~~~~~~~~~~a~~~~~~a~~~-~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~lg~~~~~~g~~~~  159 (184)
T 3vtx_A           82 ANFMIDEKQAAIDALQRAIAL-NTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPG-FIRAYQSIGLAYEGKGLRDE  159 (184)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHh-CccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcch-hhhHHHHHHHHHHHCCCHHH
Confidence            555555555555555555544 2344455555555555555555555555555555443 55555555555555555555


Q ss_pred             HHHHHHHHHh
Q 000951          965 ALKLKGTMEL  974 (1211)
Q Consensus       965 A~~~~~~~~~  974 (1211)
                      |+..|+...+
T Consensus       160 A~~~~~~al~  169 (184)
T 3vtx_A          160 AVKYFKKALE  169 (184)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHh
Confidence            5555554443

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=99.53  E-value=1.8e-13  Score=159.46  Aligned_cols=262  Identities=12%  Similarity=0.022  Sum_probs=159.2

Q ss_pred             HHHhcCChHHHHHHHHHHHHCCCCC-CH----HHHHHHHHHHHccCChHHHHHHHHHHHHC----CCCC-CHHHHHHHHH
Q 000951          710 GFSRMGNMMMANDLLSTMRSRKLCP-SL----ATYNILLHGYSKKKDLLMCSMLLNTMKME----GLLP-DKLTCHSLIL  779 (1211)
Q Consensus       710 ~~~~~g~~~~A~~~~~~~~~~~~~p-~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----g~~p-~~~~~~~l~~  779 (1211)
                      .+...|++++|...|+++.+.  .| +.    ..|..++..|...|++++|+..|+++++.    +..| ...++..+..
T Consensus        57 ~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~  134 (411)
T 4a1s_A           57 RLCNAGDCRAGVAFFQAAIQA--GTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGN  134 (411)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHH--CCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHhCcHHHHHHHHHHHHHh--cccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHH
Confidence            344444444444444444432  12 11    23444445555555555555555544431    1112 1234445555


Q ss_pred             HHHhcCChHHHHHHHHHHHHc----CCCC-CHhhHHHHHHHHHhcCc-----------------HHHHHHHHHHHHHC--
Q 000951          780 GFCETGMLEVGFKFLKKMIAE----GTMV-DCFTFNVLMRKCCEAGE-----------------MGKAFDLFNIMNML--  835 (1211)
Q Consensus       780 ~~~~~g~~~~A~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~-----------------~~~A~~~~~~~~~~--  835 (1211)
                      .|...|++++|+..++++++.    +-.+ ...++..++.+|...|+                 +++|++.|+++.+.  
T Consensus       135 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~  214 (411)
T 4a1s_A          135 TLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMR  214 (411)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHH
Confidence            566666666666666655543    0011 13355566666666666                 66666666665431  


Q ss_pred             --CCCC-ChhhHHHHHHHHHhhcchhhHHHHHHHHHHcCCCCC-------hhHHHHHHHHHHhcCChhhHHHHHHHHHHc
Q 000951          836 --GVVP-DTNTQDAIIMGLKRIAAFQESHFVLRGMAEKGLTPK-------CTQYITLINGMCRVGNFQGAFKLKDEMEAL  905 (1211)
Q Consensus       836 --~~~~-~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~g~~p~-------~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~  905 (1211)
                        +..+ ....+..++..|...|++++|+..|+++++  +.|+       ..++..++.++...|++++|...|+++++.
T Consensus       215 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  292 (411)
T 4a1s_A          215 DLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLR--IAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLAL  292 (411)
T ss_dssp             HHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH--HHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence              1011 134677777788888888888888888776  2221       136788888888889999999988888643


Q ss_pred             CC--C---CchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCccc-----CHHHHHHHHHHhhhhCCHHHHHHHHHHHHhc
Q 000951          906 GI--S---SSDVAESAMVRGLAHCGKVEEAMLVLNRMLRMRLVP-----TIATFTTLIHKFCKEAKFVDALKLKGTMELS  975 (1211)
Q Consensus       906 ~~--~---~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~p-----~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~  975 (1211)
                      ..  .   ....++..++.++...|++++|+..++++++.....     ...++..++.+|...|++++|...++.....
T Consensus       293 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  372 (411)
T 4a1s_A          293 AVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQL  372 (411)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence            11  1   114567788889999999999999999888753211     2457888999999999999999988876654

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.53  E-value=1.9e-12  Score=136.14  Aligned_cols=209  Identities=9%  Similarity=-0.058  Sum_probs=163.3

Q ss_pred             CHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHH
Q 000951          735 SLATYNILLHGYSKKKDLLMCSMLLNTMKMEGLLP-DKLTCHSLILGFCETGMLEVGFKFLKKMIAEGTMVDCFTFNVLM  813 (1211)
Q Consensus       735 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~  813 (1211)
                      +...|..++..+...|++++|+..|+++++.  .| +...+..++..|...|++++|++.++++++.. +.+..++..++
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~   83 (225)
T 2vq2_A            7 VSNIKTQLAMEYMRGQDYRQATASIEDALKS--DPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYG   83 (225)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHH
Confidence            5667777888888888888888888888773  34 45677777788888888888888888888753 33566778888


Q ss_pred             HHHHhc-CcHHHHHHHHHHHHHCCCCCC-hhhHHHHHHHHHhhcchhhHHHHHHHHHHcCCCCC-hhHHHHHHHHHHhcC
Q 000951          814 RKCCEA-GEMGKAFDLFNIMNMLGVVPD-TNTQDAIIMGLKRIAAFQESHFVLRGMAEKGLTPK-CTQYITLINGMCRVG  890 (1211)
Q Consensus       814 ~~~~~~-g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g  890 (1211)
                      .+|... |++++|++.|+++.+.+..|+ ...|..++..|...|++++|+..|+++++  ..|+ ...+..++.++...|
T Consensus        84 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~la~~~~~~~  161 (225)
T 2vq2_A           84 WFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLA--AQPQFPPAFKELARTKMLAG  161 (225)
T ss_dssp             HHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHHT
T ss_pred             HHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCchHHHHHHHHHHHcC
Confidence            888888 888888888888886222233 56788888888889999999999998888  5665 577888899999999


Q ss_pred             ChhhHHHHHHHHHHcCCC-CchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCcccCHHHHH
Q 000951          891 NFQGAFKLKDEMEALGIS-SSDVAESAMVRGLAHCGKVEEAMLVLNRMLRMRLVPTIATFT  950 (1211)
Q Consensus       891 ~~~eA~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~p~~~~~~  950 (1211)
                      ++++|...++++.+.. + .+...+..++..+...|+.++|..+++.+.+..|. ++....
T Consensus       162 ~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~-~~~~~~  220 (225)
T 2vq2_A          162 QLGDADYYFKKYQSRV-EVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPY-SEELQT  220 (225)
T ss_dssp             CHHHHHHHHHHHHHHH-CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHH
T ss_pred             CHHHHHHHHHHHHHhC-CCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCC-CHHHHH
Confidence            9999999999988763 4 56777777788888999999999999988876644 554443

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.52  E-value=1.3e-13  Score=162.69  Aligned_cols=213  Identities=7%  Similarity=-0.061  Sum_probs=149.0

Q ss_pred             hHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCcH-HHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhcchhhHHHHHH
Q 000951          787 LEVGFKFLKKMIAEGTMVDCFTFNVLMRKCCEAGEM-GKAFDLFNIMNMLGVVPDTNTQDAIIMGLKRIAAFQESHFVLR  865 (1211)
Q Consensus       787 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~  865 (1211)
                      +++++..+++.... .+.+...+..++.+|...|++ ++|++.|+++++.. +.+...|..++.+|...|++++|+..|+
T Consensus        84 ~~~al~~l~~~~~~-~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~  161 (474)
T 4abn_A           84 MEKTLQQMEEVLGS-AQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFS  161 (474)
T ss_dssp             HHHHHHHHHHHHTT-CCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcc-CchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            45555555554442 223456666666777777777 77777777766543 2236667777777777777777777777


Q ss_pred             HHHHcCCCCChhHHHHHHHHHHhc---------CChhhHHHHHHHHHHcCCCCchHHHHHHHHHHHhc--------CCHH
Q 000951          866 GMAEKGLTPKCTQYITLINGMCRV---------GNFQGAFKLKDEMEALGISSSDVAESAMVRGLAHC--------GKVE  928 (1211)
Q Consensus       866 ~~~~~g~~p~~~~~~~l~~~~~~~---------g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------g~~~  928 (1211)
                      ++++  +.|+..++..++.++...         |++++|+..|+++++.. +.+..+|..++.+|...        |+++
T Consensus       162 ~al~--~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~~~  238 (474)
T 4abn_A          162 GALT--HCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKISQ  238 (474)
T ss_dssp             HHHT--TCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred             HHHh--hCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccchHH
Confidence            7776  566666677777777777         77777777777777663 55666777777777777        7788


Q ss_pred             HHHHHHHHHHhCCc---ccCHHHHHHHHHHhhhhCCHHHHHHHHHHHHhcCCCCchH-HHHHHHHHHHhCCChhHHHHHH
Q 000951          929 EAMLVLNRMLRMRL---VPTIATFTTLIHKFCKEAKFVDALKLKGTMELSGVKLDVV-SYNVLISGLCANGDVMPAFELY 1004 (1211)
Q Consensus       929 eA~~~~~~~~~~~~---~p~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~a~~~~ 1004 (1211)
                      +|++.|+++++.+|   . ++.+|..++.+|...|++++|+..|+.....  .|+.. .+..++.++...|++++|++.+
T Consensus       239 ~A~~~~~~al~~~p~~~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~a~~~l~~~~~~lg~~~eAi~~~  315 (474)
T 4abn_A          239 QALSAYAQAEKVDRKASS-NPDLHLNRATLHKYEESYGEALEGFSQAAAL--DPAWPEPQQREQQLLEFLSRLTSLLESK  315 (474)
T ss_dssp             HHHHHHHHHHHHCGGGGG-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhCCCccc-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            88888888888765   3 7778888888888888888888887766655  67544 6777777888888888777665


Q ss_pred             HHH
Q 000951         1005 EEM 1007 (1211)
Q Consensus      1005 ~~~ 1007 (1211)
                      .++
T Consensus       316 ~~~  318 (474)
T 4abn_A          316 GKT  318 (474)
T ss_dssp             TTC
T ss_pred             ccc
Confidence            433

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=99.52  E-value=1.1e-12  Score=150.97  Aligned_cols=230  Identities=8%  Similarity=-0.029  Sum_probs=170.4

Q ss_pred             HHHHHHhcCChHHHHHHHHHHHHc----CCCC-CHhhHHHHHHHHHhcCcHHHHHHHHHHHHHCCCC-C-----ChhhHH
Q 000951          777 LILGFCETGMLEVGFKFLKKMIAE----GTMV-DCFTFNVLMRKCCEAGEMGKAFDLFNIMNMLGVV-P-----DTNTQD  845 (1211)
Q Consensus       777 l~~~~~~~g~~~~A~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~-----~~~~~~  845 (1211)
                      .+..+...|++++|+..++++++.    +-++ ...++..++.+|...|++++|++.++++.+.... +     ...+++
T Consensus       109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  188 (383)
T 3ulq_A          109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS  188 (383)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred             HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence            556677788888888888888764    1111 2456777888888888888888888877642111 1     135678


Q ss_pred             HHHHHHHhhcchhhHHHHHHHHHHcCC-CCC----hhHHHHHHHHHHhcCChhhHHHHHHHHHHc----CC-CCchHHHH
Q 000951          846 AIIMGLKRIAAFQESHFVLRGMAEKGL-TPK----CTQYITLINGMCRVGNFQGAFKLKDEMEAL----GI-SSSDVAES  915 (1211)
Q Consensus       846 ~l~~~~~~~g~~~eA~~~~~~~~~~g~-~p~----~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~----~~-~~~~~~~~  915 (1211)
                      .++..|...|++++|+..|+++++... .++    ..++..++.+|...|++++|+..|+++++.    +. +....++.
T Consensus       189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  268 (383)
T 3ulq_A          189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF  268 (383)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred             HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence            888889999999999999988886211 111    157888999999999999999999999762    33 44466788


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhCCcc---c-CHHHHHHHHHHhhhhCC---HHHHHHHHHHHHhcCCCCchH-HHHHH
Q 000951          916 AMVRGLAHCGKVEEAMLVLNRMLRMRLV---P-TIATFTTLIHKFCKEAK---FVDALKLKGTMELSGVKLDVV-SYNVL  987 (1211)
Q Consensus       916 ~l~~~~~~~g~~~eA~~~~~~~~~~~~~---p-~~~~~~~L~~~~~~~g~---~~~A~~~~~~~~~~~~~p~~~-~~~~l  987 (1211)
                      .++.++...|++++|...++++++....   | ....+..++.++...|+   +++|+..++..   +..|+.. .+..+
T Consensus       269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~l  345 (383)
T 3ulq_A          269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK---MLYADLEDFAIDV  345 (383)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC---cCHHHHHHHHHHH
Confidence            9999999999999999999999875321   1 22346778999999999   77777776543   3344433 67888


Q ss_pred             HHHHHhCCChhHHHHHHHHHHH
Q 000951          988 ISGLCANGDVMPAFELYEEMKH 1009 (1211)
Q Consensus       988 ~~~~~~~g~~~~a~~~~~~~~~ 1009 (1211)
                      +..|...|++++|.+.+++..+
T Consensus       346 a~~y~~~g~~~~A~~~~~~al~  367 (383)
T 3ulq_A          346 AKYYHERKNFQKASAYFLKVEQ  367 (383)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHH
Confidence            9999999999999999998765

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.51  E-value=7.9e-13  Score=134.09  Aligned_cols=165  Identities=12%  Similarity=0.052  Sum_probs=150.8

Q ss_pred             CChhhHHHHHHHHHhhcchhhHHHHHHHHHHcCCCCC-hhHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCchHHHHHH
Q 000951          839 PDTNTQDAIIMGLKRIAAFQESHFVLRGMAEKGLTPK-CTQYITLINGMCRVGNFQGAFKLKDEMEALGISSSDVAESAM  917 (1211)
Q Consensus       839 ~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~l  917 (1211)
                      .++..|..++..|.+.|++++|+..|+++++  ++|+ ..++..++.++...|++++|+..++++.... +.+..++..+
T Consensus         3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~   79 (184)
T 3vtx_A            3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLK--ADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYIL   79 (184)
T ss_dssp             -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHH
Confidence            3577899999999999999999999999999  8896 4889999999999999999999999998763 6677888899


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhCCcccCHHHHHHHHHHhhhhCCHHHHHHHHHHHHhcCCCCch-HHHHHHHHHHHhCCC
Q 000951          918 VRGLAHCGKVEEAMLVLNRMLRMRLVPTIATFTTLIHKFCKEAKFVDALKLKGTMELSGVKLDV-VSYNVLISGLCANGD  996 (1211)
Q Consensus       918 ~~~~~~~g~~~eA~~~~~~~~~~~~~p~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~  996 (1211)
                      +..+...+++++|...++++++..|. +..++..++.+|...|++++|+..|+.....  .|+. .+|..++.+|...|+
T Consensus        80 ~~~~~~~~~~~~a~~~~~~a~~~~~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~lg~~~~~~g~  156 (184)
T 3vtx_A           80 GSANFMIDEKQAAIDALQRAIALNTV-YADAYYKLGLVYDSMGEHDKAIEAYEKTISI--KPGFIRAYQSIGLAYEGKGL  156 (184)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHhCCchhHHHHHHHHHHh--cchhhhHHHHHHHHHHHCCC
Confidence            99999999999999999999998866 8899999999999999999999999987766  7854 489999999999999


Q ss_pred             hhHHHHHHHHHHH
Q 000951          997 VMPAFELYEEMKH 1009 (1211)
Q Consensus       997 ~~~a~~~~~~~~~ 1009 (1211)
                      +++|++.+++..+
T Consensus       157 ~~~A~~~~~~al~  169 (184)
T 3vtx_A          157 RDEAVKYFKKALE  169 (184)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999999876

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=99.50  E-value=4.3e-13  Score=151.04  Aligned_cols=266  Identities=11%  Similarity=0.005  Sum_probs=169.4

Q ss_pred             HHHHHhcCChHHHHHHHHHHHHCCCCC-C----HHHHHHHHHHHHccCChHHHHHHHHHHHHC----CCCC-CHHHHHHH
Q 000951          708 MDGFSRMGNMMMANDLLSTMRSRKLCP-S----LATYNILLHGYSKKKDLLMCSMLLNTMKME----GLLP-DKLTCHSL  777 (1211)
Q Consensus       708 i~~~~~~g~~~~A~~~~~~~~~~~~~p-~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----g~~p-~~~~~~~l  777 (1211)
                      ...+...|++++|...|+++.+.  .| +    ...+..++..|...|++++|+..++++++.    +..| ...++..+
T Consensus        12 g~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l   89 (338)
T 3ro2_A           12 GERLCKSGDCRAGVSFFEAAVQV--GTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNL   89 (338)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHH--CCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHHhccHHHHHHHHHHHHhh--CcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHH
Confidence            34444555555555555555443  22 2    234555555556666666666665554431    1111 12345555


Q ss_pred             HHHHHhcCChHHHHHHHHHHHHcCCC-CC----HhhHHHHHHHHHhcCc--------------------HHHHHHHHHHH
Q 000951          778 ILGFCETGMLEVGFKFLKKMIAEGTM-VD----CFTFNVLMRKCCEAGE--------------------MGKAFDLFNIM  832 (1211)
Q Consensus       778 ~~~~~~~g~~~~A~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~--------------------~~~A~~~~~~~  832 (1211)
                      ...|...|++++|+..++++++.... ++    ..++..++.+|...|+                    +++|++.++++
T Consensus        90 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a  169 (338)
T 3ro2_A           90 GNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEEN  169 (338)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHH
Confidence            66666667777777766666543100 11    2356666677777777                    77777777665


Q ss_pred             HHC----CCCC-ChhhHHHHHHHHHhhcchhhHHHHHHHHHHcCC-CCC----hhHHHHHHHHHHhcCChhhHHHHHHHH
Q 000951          833 NML----GVVP-DTNTQDAIIMGLKRIAAFQESHFVLRGMAEKGL-TPK----CTQYITLINGMCRVGNFQGAFKLKDEM  902 (1211)
Q Consensus       833 ~~~----~~~~-~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~g~-~p~----~~~~~~l~~~~~~~g~~~eA~~~~~~~  902 (1211)
                      .+.    +..+ ....+..++..|...|++++|+..++++++... .++    ..++..++.++...|++++|...++++
T Consensus       170 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a  249 (338)
T 3ro2_A          170 LSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKT  249 (338)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            431    1011 134677788888888888888888888875210 111    147888889999999999999999988


Q ss_pred             HHcCC-CCc----hHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCccc-----CHHHHHHHHHHhhhhCCHHHHHHHHHHH
Q 000951          903 EALGI-SSS----DVAESAMVRGLAHCGKVEEAMLVLNRMLRMRLVP-----TIATFTTLIHKFCKEAKFVDALKLKGTM  972 (1211)
Q Consensus       903 ~~~~~-~~~----~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~p-----~~~~~~~L~~~~~~~g~~~~A~~~~~~~  972 (1211)
                      ++... .++    ..++..++.++...|++++|...++++++..+..     ...++..++.+|...|++++|...++..
T Consensus       250 l~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  329 (338)
T 3ro2_A          250 LLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKH  329 (338)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence            64311 111    4467788899999999999999999988753221     2457888999999999999999998876


Q ss_pred             Hhc
Q 000951          973 ELS  975 (1211)
Q Consensus       973 ~~~  975 (1211)
                      ...
T Consensus       330 ~~~  332 (338)
T 3ro2_A          330 LEI  332 (338)
T ss_dssp             HHC
T ss_pred             HHH
Confidence            654

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.49  E-value=7.3e-13  Score=156.14  Aligned_cols=210  Identities=10%  Similarity=-0.047  Sum_probs=168.6

Q ss_pred             hHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCh-HHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCcHHHHHHHH
Q 000951          752 LLMCSMLLNTMKMEGLLP-DKLTCHSLILGFCETGML-EVGFKFLKKMIAEGTMVDCFTFNVLMRKCCEAGEMGKAFDLF  829 (1211)
Q Consensus       752 ~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~  829 (1211)
                      +++++..+.+...  ..| +...+..++.+|...|++ ++|++.|+++++.. +.+..++..++.+|...|++++|++.|
T Consensus        84 ~~~al~~l~~~~~--~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~  160 (474)
T 4abn_A           84 MEKTLQQMEEVLG--SAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCF  160 (474)
T ss_dssp             HHHHHHHHHHHHT--TCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred             HHHHHHHHHHHhc--cCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            4555556665554  233 555666677777777888 88888888877742 224667788888888888888888888


Q ss_pred             HHHHHCCCCCChhhHHHHHHHHHhh---------cchhhHHHHHHHHHHcCCCCC-hhHHHHHHHHHHhc--------CC
Q 000951          830 NIMNMLGVVPDTNTQDAIIMGLKRI---------AAFQESHFVLRGMAEKGLTPK-CTQYITLINGMCRV--------GN  891 (1211)
Q Consensus       830 ~~~~~~~~~~~~~~~~~l~~~~~~~---------g~~~eA~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~--------g~  891 (1211)
                      +++++.  .|+...+..++.+|...         |++++|+..|+++++  +.|+ ...+..++.+|...        |+
T Consensus       161 ~~al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~~~~~~~~~g~  236 (474)
T 4abn_A          161 SGALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQ--MDVLDGRSWYILGNAYLSLYFNTGQNPKI  236 (474)
T ss_dssp             HHHHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHTTCCHHH
T ss_pred             HHHHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHHHHhhccccch
Confidence            888764  35667788888888888         899999999999988  7785 47888899999888        99


Q ss_pred             hhhHHHHHHHHHHcCCC---CchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCcccCHHHHHHHHHHhhhhCCHHHHHHH
Q 000951          892 FQGAFKLKDEMEALGIS---SSDVAESAMVRGLAHCGKVEEAMLVLNRMLRMRLVPTIATFTTLIHKFCKEAKFVDALKL  968 (1211)
Q Consensus       892 ~~eA~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~p~~~~~~~L~~~~~~~g~~~~A~~~  968 (1211)
                      +++|+..|+++++.. +   .+..+|..++.+|...|++++|++.|+++++.+|. +..+|..++.++...|++++|+..
T Consensus       237 ~~~A~~~~~~al~~~-p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~a~~~l~~~~~~lg~~~eAi~~  314 (474)
T 4abn_A          237 SQQALSAYAQAEKVD-RKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPA-WPEPQQREQQLLEFLSRLTSLLES  314 (474)
T ss_dssp             HHHHHHHHHHHHHHC-GGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhC-CCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999998763 4   57888999999999999999999999999998876 888999999999999999999886


Q ss_pred             HH
Q 000951          969 KG  970 (1211)
Q Consensus       969 ~~  970 (1211)
                      +.
T Consensus       315 ~~  316 (474)
T 4abn_A          315 KG  316 (474)
T ss_dssp             TT
T ss_pred             hc
Confidence            43

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=99.48  E-value=1.3e-11  Score=136.66  Aligned_cols=219  Identities=10%  Similarity=0.025  Sum_probs=148.0

Q ss_pred             HHHHHHHHHHHHCCCCC-CHHHHHHHHHHHH-------hcCCh-------HHHHHHHHHHHHcCCCCCHhhHHHHHHHHH
Q 000951          753 LMCSMLLNTMKMEGLLP-DKLTCHSLILGFC-------ETGML-------EVGFKFLKKMIAEGTMVDCFTFNVLMRKCC  817 (1211)
Q Consensus       753 ~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~-------~~g~~-------~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~  817 (1211)
                      ++|+..|+++++  ..| +...|..++..+.       ..|++       ++|+.+|+++++.-.+.+...|..++..+.
T Consensus        33 ~~a~~~~~~al~--~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~  110 (308)
T 2ond_A           33 KRVMFAYEQCLL--VLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEE  110 (308)
T ss_dssp             HHHHHHHHHHHH--HHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH--HcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence            566677777766  334 4455665555554       34665       778888888876312224557777777888


Q ss_pred             hcCcHHHHHHHHHHHHHCCCCCC-hh-hHHHHHHHHHhhcchhhHHHHHHHHHHcCCCCCh-hHHHHHHHHHH-hcCChh
Q 000951          818 EAGEMGKAFDLFNIMNMLGVVPD-TN-TQDAIIMGLKRIAAFQESHFVLRGMAEKGLTPKC-TQYITLINGMC-RVGNFQ  893 (1211)
Q Consensus       818 ~~g~~~~A~~~~~~~~~~~~~~~-~~-~~~~l~~~~~~~g~~~eA~~~~~~~~~~g~~p~~-~~~~~l~~~~~-~~g~~~  893 (1211)
                      +.|++++|.++|+++++.  .|+ .. .|..++..+.+.|++++|..+|+++++  ..|+. ..|...+.... ..|+++
T Consensus       111 ~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~--~~p~~~~~~~~~a~~~~~~~~~~~  186 (308)
T 2ond_A          111 SRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARE--DARTRHHVYVTAALMEYYCSKDKS  186 (308)
T ss_dssp             HTTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHT--STTCCTHHHHHHHHHHHHTSCCHH
T ss_pred             hcCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHHHcCCHH
Confidence            888888888888888763  343 33 677778777788888888888888877  44543 44444433322 257888


Q ss_pred             hHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-ccc--CHHHHHHHHHHhhhhCCHHHHHHHHH
Q 000951          894 GAFKLKDEMEALGISSSDVAESAMVRGLAHCGKVEEAMLVLNRMLRMR-LVP--TIATFTTLIHKFCKEAKFVDALKLKG  970 (1211)
Q Consensus       894 eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~-~~p--~~~~~~~L~~~~~~~g~~~~A~~~~~  970 (1211)
                      +|.+.|+++++. .+.+..+|..++..+.+.|++++|..+|+++++.. .+|  ....|..++..+...|++++|..+++
T Consensus       187 ~A~~~~~~al~~-~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~  265 (308)
T 2ond_A          187 VAFKIFELGLKK-YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEK  265 (308)
T ss_dssp             HHHHHHHHHHHH-HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred             HHHHHHHHHHHh-CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            888888888765 35566777777778888888888888888888752 122  45677777777777888888887777


Q ss_pred             HHHhcCCCCc
Q 000951          971 TMELSGVKLD  980 (1211)
Q Consensus       971 ~~~~~~~~p~  980 (1211)
                      ...+.  .|+
T Consensus       266 ~a~~~--~p~  273 (308)
T 2ond_A          266 RRFTA--FRE  273 (308)
T ss_dssp             HHHHH--TTT
T ss_pred             HHHHH--ccc
Confidence            66554  554

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=99.48  E-value=6e-10  Score=134.26  Aligned_cols=454  Identities=10%  Similarity=-0.036  Sum_probs=297.4

Q ss_pred             hHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCC---HHHHHHH
Q 000951          506 VCEAEDYVGHMKRIGVVPNSITFDCMIDGYGTLGDGLKAFSMFDEMVKLGHHPSIFTYGSLLKGLCKGGN---LKEAKRF  582 (1211)
Q Consensus       506 ~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~---~~~A~~~  582 (1211)
                      ..+.+..|+..+... +-|..+|..++..+.+.+.++.+..+|++++.. .+.....|...+..-.+.++   ++.+.++
T Consensus        48 ~~d~i~~lE~~l~~n-p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~l  125 (679)
T 4e6h_A           48 ESDVIGKLNDMIEEQ-PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIEPV  125 (679)
T ss_dssp             CSCHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHHHH
T ss_pred             CHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHHHH
Confidence            445555666666554 358889999999999999999999999999875 45567778888888888888   9999999


Q ss_pred             HHHhhhCCC-CccHHHHHHHHHHHHHcCCH--------HHHHHHHHHHHh-CCC-CCC-HHHHHHHHHHHH---------
Q 000951          583 LNSLHHIPS-AVDTVAYNTILAETCKSGNL--------WEAIVLLDEMVQ-FNL-LPD-RYTYTILLAGLC---------  641 (1211)
Q Consensus       583 ~~~~~~~~~-~~~~~~~~~li~~~~~~g~~--------~~A~~~~~~m~~-~~~-~p~-~~~~~~li~~~~---------  641 (1211)
                      |++.+...+ .+++..|...+....+.++.        +...++|+..+. .|. .|+ ...|...+....         
T Consensus       126 feRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~e  205 (679)
T 4e6h_A          126 LARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFE  205 (679)
T ss_dssp             HHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHH
T ss_pred             HHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHH
Confidence            999988662 35777888877766665543        334477777665 354 443 467777776543         


Q ss_pred             hCCChHHHHHHHHHHHHcCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHH
Q 000951          642 RKGKVVSALLFFEKVVSKRTFSPN--NVMFTCLVDGLFKAGQSKAAMHISKIMDKEGVYPDTIAFNAVMDGFSRMGNMMM  719 (1211)
Q Consensus       642 ~~g~~~~A~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~  719 (1211)
                      .+++++.+..+|++++.   ++..  ..+|......-...+. ..+..++.+                     ...+++.
T Consensus       206 eq~~~~~~R~iy~raL~---iP~~~~~~~w~~Y~~fe~~~~~-~~a~~~~~e---------------------~~~~y~~  260 (679)
T 4e6h_A          206 EQQRVQYIRKLYKTLLC---QPMDCLESMWQRYTQWEQDVNQ-LTARRHIGE---------------------LSAQYMN  260 (679)
T ss_dssp             HHHHHHHHHHHHHHHTT---SCCSSHHHHHHHHHHHHHHHCT-TTHHHHHHH---------------------HHHHHHH
T ss_pred             HHhHHHHHHHHHHHHHh---CccHHHHHHHHHHHHHHHhcCc-chHHHHHHH---------------------hhHHHHH
Confidence            23456778888888875   2222  2233222211101000 001111111                     0112333


Q ss_pred             HHHHHHHHHH--CCC----C-----------C--C------HHHHHHHHHHHHccC-------ChHHHHHHHHHHHHCCC
Q 000951          720 ANDLLSTMRS--RKL----C-----------P--S------LATYNILLHGYSKKK-------DLLMCSMLLNTMKMEGL  767 (1211)
Q Consensus       720 A~~~~~~~~~--~~~----~-----------p--~------~~~~~~l~~~~~~~g-------~~~~A~~~~~~~~~~g~  767 (1211)
                      |...+.++..  .++    +           |  +      ...|...+.--...+       ..+.+..+|++++.. .
T Consensus       261 Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~-~  339 (679)
T 4e6h_A          261 ARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH-V  339 (679)
T ss_dssp             HHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-T
T ss_pred             HHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH-c
Confidence            3443333211  011    0           1  0      234555544332222       123456778888874 2


Q ss_pred             CCCHHHHHHHHHHHHhcCChHHHH-HHHHHHHHcCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHHHHHCC---------C
Q 000951          768 LPDKLTCHSLILGFCETGMLEVGF-KFLKKMIAEGTMVDCFTFNVLMRKCCEAGEMGKAFDLFNIMNMLG---------V  837 (1211)
Q Consensus       768 ~p~~~~~~~l~~~~~~~g~~~~A~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---------~  837 (1211)
                      .-....|...+.-+...|+.++|. ++|++++.. .+.+...+..++....+.|++++|.++|+++++..         .
T Consensus       340 p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~  418 (679)
T 4e6h_A          340 CFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMED  418 (679)
T ss_dssp             TTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhc
Confidence            226677777777777888888996 999999875 34456677788888889999999999999887521         0


Q ss_pred             CC------------ChhhHHHHHHHHHhhcchhhHHHHHHHHHHcCCCCChhHHHHHHHHHHhcC-ChhhHHHHHHHHHH
Q 000951          838 VP------------DTNTQDAIIMGLKRIAAFQESHFVLRGMAEKGLTPKCTQYITLINGMCRVG-NFQGAFKLKDEMEA  904 (1211)
Q Consensus       838 ~~------------~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g-~~~eA~~~~~~~~~  904 (1211)
                      .|            ....|...+....+.|..+.|..+|.++++.-..+....|...+..-.+.+ +++.|.++|+.+++
T Consensus       419 ~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk  498 (679)
T 4e6h_A          419 DPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLK  498 (679)
T ss_dssp             STTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHH
T ss_pred             cCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence            12            123677777777888999999999999987311112355655555544554 58999999999987


Q ss_pred             cCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCccc--CHHHHHHHHHHhhhhCCHHHHHHHHHHHHhcCCCCchH
Q 000951          905 LGISSSDVAESAMVRGLAHCGKVEEAMLVLNRMLRMRLVP--TIATFTTLIHKFCKEAKFVDALKLKGTMELSGVKLDVV  982 (1211)
Q Consensus       905 ~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~p--~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~  982 (1211)
                      . .+.+...|...++.....|+.+.|..+|++++...+.+  ....|...+..-.+.|+.+.+..+.+.+.+.  .|+..
T Consensus       499 ~-~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~--~P~~~  575 (679)
T 4e6h_A          499 Y-FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEK--FPEVN  575 (679)
T ss_dssp             H-HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHH--STTCC
T ss_pred             H-CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCc
Confidence            6 56677778888888888899999999999999876532  3467888888888899999999998888776  67665


Q ss_pred             HHHHHHHHH
Q 000951          983 SYNVLISGL  991 (1211)
Q Consensus       983 ~~~~l~~~~  991 (1211)
                      ....+..-|
T Consensus       576 ~~~~f~~ry  584 (679)
T 4e6h_A          576 KLEEFTNKY  584 (679)
T ss_dssp             HHHHHHHHT
T ss_pred             HHHHHHHHh
Confidence            555555544

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.46  E-value=9.9e-13  Score=160.65  Aligned_cols=162  Identities=16%  Similarity=0.097  Sum_probs=92.5

Q ss_pred             hhhHHHHHHHHHhhcchhhHHHHHHHHHHcCCCCCh-hHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCchHHHHHHHH
Q 000951          841 TNTQDAIIMGLKRIAAFQESHFVLRGMAEKGLTPKC-TQYITLINGMCRVGNFQGAFKLKDEMEALGISSSDVAESAMVR  919 (1211)
Q Consensus       841 ~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~  919 (1211)
                      ..+|+.|+.+|.+.|++++|+..|+++++  ++|+. .++..++.+|.+.|++++|++.|+++++.. +.+..+|..++.
T Consensus         9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~--l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nLg~   85 (723)
T 4gyw_A            9 ADSLNNLANIKREQGNIEEAVRLYRKALE--VFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGN   85 (723)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence            44555555555555555555555555555  55542 555555666666666666666666655542 344555556666


Q ss_pred             HHHhcCCHHHHHHHHHHHHhCCcccCHHHHHHHHHHhhhhCCHHHHHHHHHHHHhcCCCCchH-HHHHHHHHHHhCCChh
Q 000951          920 GLAHCGKVEEAMLVLNRMLRMRLVPTIATFTTLIHKFCKEAKFVDALKLKGTMELSGVKLDVV-SYNVLISGLCANGDVM  998 (1211)
Q Consensus       920 ~~~~~g~~~eA~~~~~~~~~~~~~p~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~  998 (1211)
                      +|...|++++|++.|+++++.+|. +..+|..||.+|...|++++|+..|+...+.  .|+.. .+..++.+|...|+|+
T Consensus        86 ~l~~~g~~~~A~~~~~kAl~l~P~-~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l--~P~~~~a~~~L~~~l~~~g~~~  162 (723)
T 4gyw_A           86 TLKEMQDVQGALQCYTRAIQINPA-FADAHSNLASIHKDSGNIPEAIASYRTALKL--KPDFPDAYCNLAHCLQIVCDWT  162 (723)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCCT
T ss_pred             HHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHhhhhhHHHhcccHH
Confidence            666666666666666666655544 5556666666666666666666665544444  55433 5555666666666666


Q ss_pred             HHHHHHHHHH
Q 000951          999 PAFELYEEMK 1008 (1211)
Q Consensus       999 ~a~~~~~~~~ 1008 (1211)
                      +|.+.+++..
T Consensus       163 ~A~~~~~kal  172 (723)
T 4gyw_A          163 DYDERMKKLV  172 (723)
T ss_dssp             THHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            6665555543

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=99.46  E-value=2.1e-12  Score=148.43  Aligned_cols=230  Identities=7%  Similarity=-0.020  Sum_probs=135.4

Q ss_pred             HHHHHHccCChHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC--CC---C-CHhhHH
Q 000951          742 LLHGYSKKKDLLMCSMLLNTMKME----GLLP-DKLTCHSLILGFCETGMLEVGFKFLKKMIAEG--TM---V-DCFTFN  810 (1211)
Q Consensus       742 l~~~~~~~g~~~~A~~~~~~~~~~----g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~---~-~~~~~~  810 (1211)
                      .+..+...|++++|+..|+++++.    +-.+ ...++..++..|...|++++|+..++++++..  ..   + ...+++
T Consensus       109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  188 (383)
T 3ulq_A          109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS  188 (383)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred             HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence            344455555555555555555442    0011 11344555555666666666666666555430  00   0 123555


Q ss_pred             HHHHHHHhcCcHHHHHHHHHHHHHCCCC-CC----hhhHHHHHHHHHhhcchhhHHHHHHHHHHc----CCCCC-hhHHH
Q 000951          811 VLMRKCCEAGEMGKAFDLFNIMNMLGVV-PD----TNTQDAIIMGLKRIAAFQESHFVLRGMAEK----GLTPK-CTQYI  880 (1211)
Q Consensus       811 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~----g~~p~-~~~~~  880 (1211)
                      .++.+|...|++++|++.|+++++.... ++    ..++..++.+|...|++++|+..|+++++.    +..|. ..++.
T Consensus       189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  268 (383)
T 3ulq_A          189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF  268 (383)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred             HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence            6666666666666666666666431100 11    235666777777777777777777776651    22243 36677


Q ss_pred             HHHHHHHhcCChhhHHHHHHHHHHc----CCCCchHHHHHHHHHHHhcCC---HHHHHHHHHHHHhCCccc-CHHHHHHH
Q 000951          881 TLINGMCRVGNFQGAFKLKDEMEAL----GISSSDVAESAMVRGLAHCGK---VEEAMLVLNRMLRMRLVP-TIATFTTL  952 (1211)
Q Consensus       881 ~l~~~~~~~g~~~eA~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~g~---~~eA~~~~~~~~~~~~~p-~~~~~~~L  952 (1211)
                      .++.++...|++++|...++++++.    +.+.....+..++.++...|+   +++|+.++++.   +..| ...++..|
T Consensus       269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~l  345 (383)
T 3ulq_A          269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK---MLYADLEDFAIDV  345 (383)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC---cCHHHHHHHHHHH
Confidence            7777888888888888888777543    112222335667778888887   77777777765   2222 44577788


Q ss_pred             HHHhhhhCCHHHHHHHHHHHHh
Q 000951          953 IHKFCKEAKFVDALKLKGTMEL  974 (1211)
Q Consensus       953 ~~~~~~~g~~~~A~~~~~~~~~  974 (1211)
                      +.+|...|++++|...|+....
T Consensus       346 a~~y~~~g~~~~A~~~~~~al~  367 (383)
T 3ulq_A          346 AKYYHERKNFQKASAYFLKVEQ  367 (383)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHH
Confidence            8888888888888888776543

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.44  E-value=6.2e-13  Score=147.93  Aligned_cols=236  Identities=14%  Similarity=0.080  Sum_probs=114.0

Q ss_pred             HHHHHHHHHHHHccCChHHHHHHHHHHHHC-----C-CCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHc------CC
Q 000951          736 LATYNILLHGYSKKKDLLMCSMLLNTMKME-----G-LLP-DKLTCHSLILGFCETGMLEVGFKFLKKMIAE------GT  802 (1211)
Q Consensus       736 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----g-~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~~  802 (1211)
                      ..++..++..|...|++++|+..|+++++.     + ..| ...++..++..|...|++++|+..+++++..      +.
T Consensus        27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  106 (311)
T 3nf1_A           27 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKD  106 (311)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence            455556666666666666666666665542     0 012 2234555566666666666666666666553      11


Q ss_pred             CC-CHhhHHHHHHHHHhcCcHHHHHHHHHHHHHC------CCCC-ChhhHHHHHHHHHhhcchhhHHHHHHHHHHc----
Q 000951          803 MV-DCFTFNVLMRKCCEAGEMGKAFDLFNIMNML------GVVP-DTNTQDAIIMGLKRIAAFQESHFVLRGMAEK----  870 (1211)
Q Consensus       803 ~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~~~~-~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~----  870 (1211)
                      .| ...++..++.+|...|++++|++.|+++.+.      +..| ....+..++..|...|++++|+..|+++++.    
T Consensus       107 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~  186 (311)
T 3nf1_A          107 HPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTK  186 (311)
T ss_dssp             CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHT
T ss_pred             ChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence            11 2345556666666666666666666665532      1111 1344555666666666666666666666552    


Q ss_pred             --CCCCC-hhHHHHHHHHHHhcCChhhHHHHHHHHHHcC-------CCC-c------hHHHHHHHHHHHhcCCHHHHHHH
Q 000951          871 --GLTPK-CTQYITLINGMCRVGNFQGAFKLKDEMEALG-------ISS-S------DVAESAMVRGLAHCGKVEEAMLV  933 (1211)
Q Consensus       871 --g~~p~-~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~-------~~~-~------~~~~~~l~~~~~~~g~~~eA~~~  933 (1211)
                        +..|. ..++..++.++...|++++|.+.|+++++..       ..+ .      ...+..++..+...+.+.+|...
T Consensus       187 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~  266 (311)
T 3nf1_A          187 LGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGW  266 (311)
T ss_dssp             SCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC--
T ss_pred             hCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHH
Confidence              11232 2455566666666666666666666665320       000 0      01111222233333444444455


Q ss_pred             HHHHHhCCcccCHHHHHHHHHHhhhhCCHHHHHHHHHHH
Q 000951          934 LNRMLRMRLVPTIATFTTLIHKFCKEAKFVDALKLKGTM  972 (1211)
Q Consensus       934 ~~~~~~~~~~p~~~~~~~L~~~~~~~g~~~~A~~~~~~~  972 (1211)
                      ++++....+. +..+|..++.+|...|++++|+..|+..
T Consensus       267 ~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~a  304 (311)
T 3nf1_A          267 YKACKVDSPT-VTTTLKNLGALYRRQGKFEAAETLEEAA  304 (311)
T ss_dssp             -------CHH-HHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HhhcCCCCch-HHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            5554443322 4455555555555555555555555443

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=99.44  E-value=1.6e-09  Score=130.52  Aligned_cols=220  Identities=9%  Similarity=-0.066  Sum_probs=167.1

Q ss_pred             HHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCcHHHHH-HHHHHHHHCCCCCChhhHHHHHHHHHhhcchhhHHHHHHH
Q 000951          788 EVGFKFLKKMIAEGTMVDCFTFNVLMRKCCEAGEMGKAF-DLFNIMNMLGVVPDTNTQDAIIMGLKRIAAFQESHFVLRG  866 (1211)
Q Consensus       788 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~  866 (1211)
                      +....+|++++.. .+.....|...+..+...|+.++|. ++|+++... ++.+...|...+....+.|++++|..+|++
T Consensus       326 ~Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek  403 (679)
T 4e6h_A          326 ARMTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILS  403 (679)
T ss_dssp             HHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence            3456788888886 4446778888888888899999997 999999863 344566788888889999999999999999


Q ss_pred             HHHcC---------CCCC------------hhHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCchHHHHHHHHHHHhcC
Q 000951          867 MAEKG---------LTPK------------CTQYITLINGMCRVGNFQGAFKLKDEMEALGISSSDVAESAMVRGLAHCG  925 (1211)
Q Consensus       867 ~~~~g---------~~p~------------~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  925 (1211)
                      +++..         -.|.            ...|...+....+.|..+.|..+|+++.+........+|...+.+-.+.|
T Consensus       404 ~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~  483 (679)
T 4e6h_A          404 CIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHIS  483 (679)
T ss_dssp             HHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhC
Confidence            98731         0142            23677778888888999999999999986511223445555555555555


Q ss_pred             -CHHHHHHHHHHHHhCCcccCHHHHHHHHHHhhhhCCHHHHHHHHHHHHhcCCCC-ch-HHHHHHHHHHHhCCChhHHHH
Q 000951          926 -KVEEAMLVLNRMLRMRLVPTIATFTTLIHKFCKEAKFVDALKLKGTMELSGVKL-DV-VSYNVLISGLCANGDVMPAFE 1002 (1211)
Q Consensus       926 -~~~eA~~~~~~~~~~~~~p~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~-~~~~~l~~~~~~~g~~~~a~~ 1002 (1211)
                       +.+.|.++|+.+++.-+. ++..|...+......|+.+.|..+|+.......+| +. ..|...+..-...|+.+.+.+
T Consensus       484 ~d~e~Ar~ife~~Lk~~p~-~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~  562 (679)
T 4e6h_A          484 KDTKTACKVLELGLKYFAT-DGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRT  562 (679)
T ss_dssp             SCCHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHH
T ss_pred             CCHHHHHHHHHHHHHHCCC-chHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence             489999999999997544 77888888888889999999999999766552222 23 256666777778899999999


Q ss_pred             HHHHHHHc
Q 000951         1003 LYEEMKHK 1010 (1211)
Q Consensus      1003 ~~~~~~~~ 1010 (1211)
                      +.+++.+.
T Consensus       563 v~~R~~~~  570 (679)
T 4e6h_A          563 LEKRFFEK  570 (679)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHh
Confidence            99999774

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=99.41  E-value=3.9e-11  Score=132.91  Aligned_cols=217  Identities=8%  Similarity=-0.054  Sum_probs=175.0

Q ss_pred             HHHHHHHHHHHHcCCCCCHhhHHHHHHHHH-------hcCcH-------HHHHHHHHHHHHCCCCCChhhHHHHHHHHHh
Q 000951          788 EVGFKFLKKMIAEGTMVDCFTFNVLMRKCC-------EAGEM-------GKAFDLFNIMNMLGVVPDTNTQDAIIMGLKR  853 (1211)
Q Consensus       788 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~g~~-------~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~  853 (1211)
                      ++|+..|++++.. .+.++..|..++..+.       +.|++       ++|+.+|+++++.-.+.+...|..++..+.+
T Consensus        33 ~~a~~~~~~al~~-~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~  111 (308)
T 2ond_A           33 KRVMFAYEQCLLV-LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES  111 (308)
T ss_dssp             HHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence            6888999999885 2345778888887765       35876       8999999999873113346789999999999


Q ss_pred             hcchhhHHHHHHHHHHcCCCCCh-h-HHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCchHHHHHHHHHHH-hcCCHHHH
Q 000951          854 IAAFQESHFVLRGMAEKGLTPKC-T-QYITLINGMCRVGNFQGAFKLKDEMEALGISSSDVAESAMVRGLA-HCGKVEEA  930 (1211)
Q Consensus       854 ~g~~~eA~~~~~~~~~~g~~p~~-~-~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~eA  930 (1211)
                      .|++++|...|+++++  +.|+. . .|..++..+.+.|++++|...|+++++.. +++..+|...+.... ..|++++|
T Consensus       112 ~~~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A  188 (308)
T 2ond_A          112 RMKYEKVHSIYNRLLA--IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVA  188 (308)
T ss_dssp             TTCHHHHHHHHHHHHT--SSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHH
T ss_pred             cCCHHHHHHHHHHHHh--ccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHHH
Confidence            9999999999999998  77864 4 79999999999999999999999998763 445556655554433 37999999


Q ss_pred             HHHHHHHHhCCcccCHHHHHHHHHHhhhhCCHHHHHHHHHHHHhcC-CCCc--hHHHHHHHHHHHhCCChhHHHHHHHHH
Q 000951          931 MLVLNRMLRMRLVPTIATFTTLIHKFCKEAKFVDALKLKGTMELSG-VKLD--VVSYNVLISGLCANGDVMPAFELYEEM 1007 (1211)
Q Consensus       931 ~~~~~~~~~~~~~p~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~-~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~ 1007 (1211)
                      ..+|+++++..|. ++..|..++..+.+.|++++|..+|+...... +.|+  ...|..++..+...|++++|..+++.+
T Consensus       189 ~~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a  267 (308)
T 2ond_A          189 FKIFELGLKKYGD-IPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR  267 (308)
T ss_dssp             HHHHHHHHHHHTT-CHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            9999999997765 88999999999999999999999998877752 4553  347778888888899999999999888


Q ss_pred             HH
Q 000951         1008 KH 1009 (1211)
Q Consensus      1008 ~~ 1009 (1211)
                      .+
T Consensus       268 ~~  269 (308)
T 2ond_A          268 FT  269 (308)
T ss_dssp             HH
T ss_pred             HH
Confidence            66

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.41  E-value=2.7e-12  Score=156.78  Aligned_cols=165  Identities=15%  Similarity=0.143  Sum_probs=135.4

Q ss_pred             HhhHHHHHHHHHhcCcHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhcchhhHHHHHHHHHHcCCCCCh-hHHHHHHH
Q 000951          806 CFTFNVLMRKCCEAGEMGKAFDLFNIMNMLGVVPDTNTQDAIIMGLKRIAAFQESHFVLRGMAEKGLTPKC-TQYITLIN  884 (1211)
Q Consensus       806 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~g~~p~~-~~~~~l~~  884 (1211)
                      ..+++.|+.+|.+.|++++|++.|+++++.. +.+...|..++.+|.+.|++++|+..|+++++  ++|+. .+|..++.
T Consensus         9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~--l~P~~~~a~~nLg~   85 (723)
T 4gyw_A            9 ADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIR--ISPTFADAYSNMGN   85 (723)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHH
Confidence            5677888888888888888888888887643 23477788888888888888888888888888  77864 78888888


Q ss_pred             HHHhcCChhhHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCcccCHHHHHHHHHHhhhhCCHHH
Q 000951          885 GMCRVGNFQGAFKLKDEMEALGISSSDVAESAMVRGLAHCGKVEEAMLVLNRMLRMRLVPTIATFTTLIHKFCKEAKFVD  964 (1211)
Q Consensus       885 ~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~p~~~~~~~L~~~~~~~g~~~~  964 (1211)
                      ++...|++++|++.|+++++.. +.+..+++.++.+|...|++++|++.|+++++.+|. +..+|..|+.+|...|++++
T Consensus        86 ~l~~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~-~~~a~~~L~~~l~~~g~~~~  163 (723)
T 4gyw_A           86 TLKEMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPD-FPDAYCNLAHCLQIVCDWTD  163 (723)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCCTT
T ss_pred             HHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHhhhhhHHHhcccHHH
Confidence            8888899999999998888773 566778888899999999999999999999988766 78888999999999999999


Q ss_pred             HHHHHHHHHhc
Q 000951          965 ALKLKGTMELS  975 (1211)
Q Consensus       965 A~~~~~~~~~~  975 (1211)
                      |.+.++...+.
T Consensus       164 A~~~~~kal~l  174 (723)
T 4gyw_A          164 YDERMKKLVSI  174 (723)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHh
Confidence            88887765543

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.41  E-value=1.6e-12  Score=144.47  Aligned_cols=237  Identities=14%  Similarity=0.077  Sum_probs=172.7

Q ss_pred             HHHHHHHHHHHHhcCChHHHHHHHHHHHHc-------CCCCCHhhHHHHHHHHHhcCcHHHHHHHHHHHHHC------CC
Q 000951          771 KLTCHSLILGFCETGMLEVGFKFLKKMIAE-------GTMVDCFTFNVLMRKCCEAGEMGKAFDLFNIMNML------GV  837 (1211)
Q Consensus       771 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~~  837 (1211)
                      ..++..++..+...|++++|+.+++++++.       ..+....++..++.+|...|++++|++.|+++.+.      +-
T Consensus        27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  106 (311)
T 3nf1_A           27 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKD  106 (311)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence            456778889999999999999999999873       22334667888999999999999999999988753      11


Q ss_pred             CC-ChhhHHHHHHHHHhhcchhhHHHHHHHHHHc------CCCCC-hhHHHHHHHHHHhcCChhhHHHHHHHHHHc----
Q 000951          838 VP-DTNTQDAIIMGLKRIAAFQESHFVLRGMAEK------GLTPK-CTQYITLINGMCRVGNFQGAFKLKDEMEAL----  905 (1211)
Q Consensus       838 ~~-~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~------g~~p~-~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~----  905 (1211)
                      .| ....+..++..|...|++++|+..|+++++.      +..|. ..++..++.++...|++++|+++|+++.+.    
T Consensus       107 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~  186 (311)
T 3nf1_A          107 HPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTK  186 (311)
T ss_dssp             CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHT
T ss_pred             ChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence            22 3667889999999999999999999999873      22343 377889999999999999999999999754    


Q ss_pred             --CCCC-chHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCcc-------c-C------HHHHHHHHHHhhhhCCHHHHHHH
Q 000951          906 --GISS-SDVAESAMVRGLAHCGKVEEAMLVLNRMLRMRLV-------P-T------IATFTTLIHKFCKEAKFVDALKL  968 (1211)
Q Consensus       906 --~~~~-~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~-------p-~------~~~~~~L~~~~~~~g~~~~A~~~  968 (1211)
                        +..| ...++..++.++...|++++|++.++++++..+.       | .      ...+..++..+...+.+.+|...
T Consensus       187 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~  266 (311)
T 3nf1_A          187 LGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGW  266 (311)
T ss_dssp             SCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC--
T ss_pred             hCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHH
Confidence              2122 3446788999999999999999999999874211       1 1      22334444445556677777777


Q ss_pred             HHHHHhcCCCCch-HHHHHHHHHHHhCCChhHHHHHHHHHHH
Q 000951          969 KGTMELSGVKLDV-VSYNVLISGLCANGDVMPAFELYEEMKH 1009 (1211)
Q Consensus       969 ~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 1009 (1211)
                      ++.....  .|+. .++..++.+|...|++++|.+.+++..+
T Consensus       267 ~~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  306 (311)
T 3nf1_A          267 YKACKVD--SPTVTTTLKNLGALYRRQGKFEAAETLEEAAMR  306 (311)
T ss_dssp             ---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HhhcCCC--CchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            6654433  5644 4788899999999999999999988765

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=99.40  E-value=3.5e-11  Score=137.92  Aligned_cols=231  Identities=9%  Similarity=-0.023  Sum_probs=171.8

Q ss_pred             HHHHHHHhcCChHHHHHHHHHHHHcCC-CCC----HhhHHHHHHHHHhcCcHHHHHHHHHHHHHCCCC-C-----ChhhH
Q 000951          776 SLILGFCETGMLEVGFKFLKKMIAEGT-MVD----CFTFNVLMRKCCEAGEMGKAFDLFNIMNMLGVV-P-----DTNTQ  844 (1211)
Q Consensus       776 ~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~-----~~~~~  844 (1211)
                      ..+..+...|++++|+..++++++... .++    ..++..++.+|...|++++|++.++++.+.... +     ...++
T Consensus       106 ~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  185 (378)
T 3q15_A          106 FRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSL  185 (378)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHH
T ss_pred             HHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHH
Confidence            345667788888888888888876411 122    456777888888899999998888887642111 1     14567


Q ss_pred             HHHHHHHHhhcchhhHHHHHHHHHHcC----CCCC-hhHHHHHHHHHHhcCChhhHHHHHHHHHHc----CCCCchHHHH
Q 000951          845 DAIIMGLKRIAAFQESHFVLRGMAEKG----LTPK-CTQYITLINGMCRVGNFQGAFKLKDEMEAL----GISSSDVAES  915 (1211)
Q Consensus       845 ~~l~~~~~~~g~~~eA~~~~~~~~~~g----~~p~-~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~----~~~~~~~~~~  915 (1211)
                      +.++..|...|++++|+..|+++++..    -.+. ..++..++.+|...|++++|+..|+++++.    +.+....++.
T Consensus       186 ~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~  265 (378)
T 3q15_A          186 FVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLF  265 (378)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHH
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHH
Confidence            888889999999999999999888621    1111 267888999999999999999999999761    2344466788


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhCCcc---c-CHHHHHHHHHHhhhhCC---HHHHHHHHHHHHhcCCCCchH-HHHHH
Q 000951          916 AMVRGLAHCGKVEEAMLVLNRMLRMRLV---P-TIATFTTLIHKFCKEAK---FVDALKLKGTMELSGVKLDVV-SYNVL  987 (1211)
Q Consensus       916 ~l~~~~~~~g~~~eA~~~~~~~~~~~~~---p-~~~~~~~L~~~~~~~g~---~~~A~~~~~~~~~~~~~p~~~-~~~~l  987 (1211)
                      .++.++.+.|++++|...++++++....   | ....+..++..+...|+   +++|+..++.   .+..|+.. .+..+
T Consensus       266 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~---~~~~~~~~~~~~~l  342 (378)
T 3q15_A          266 GLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEK---KNLHAYIEACARSA  342 (378)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHH---TTCHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh---CCChhHHHHHHHHH
Confidence            9999999999999999999999885322   1 23456777788888888   7788777664   23344433 66788


Q ss_pred             HHHHHhCCChhHHHHHHHHHHH
Q 000951          988 ISGLCANGDVMPAFELYEEMKH 1009 (1211)
Q Consensus       988 ~~~~~~~g~~~~a~~~~~~~~~ 1009 (1211)
                      +..|...|++++|.+.+++..+
T Consensus       343 a~~y~~~g~~~~A~~~~~~al~  364 (378)
T 3q15_A          343 AAVFESSCHFEQAAAFYRKVLK  364 (378)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHH
Confidence            8899999999999999988755

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=99.37  E-value=7.4e-11  Score=135.14  Aligned_cols=233  Identities=10%  Similarity=-0.036  Sum_probs=172.5

Q ss_pred             HHHHHHHHHccCChHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHHcC--C---CC-CHh
Q 000951          739 YNILLHGYSKKKDLLMCSMLLNTMKMEGL-LPD----KLTCHSLILGFCETGMLEVGFKFLKKMIAEG--T---MV-DCF  807 (1211)
Q Consensus       739 ~~~l~~~~~~~g~~~~A~~~~~~~~~~g~-~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~---~~-~~~  807 (1211)
                      |...+..+...|++++|+..|+++.+... .++    ..++..++.+|...|++++|+..++++++..  .   .+ ...
T Consensus       104 ~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~  183 (378)
T 3q15_A          104 LFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQ  183 (378)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHH
T ss_pred             HHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHH
Confidence            44456677788999999999998876311 122    2466778888999999999999999887641  1   11 145


Q ss_pred             hHHHHHHHHHhcCcHHHHHHHHHHHHHC----CCCC-ChhhHHHHHHHHHhhcchhhHHHHHHHHHHc---CCCCC-hhH
Q 000951          808 TFNVLMRKCCEAGEMGKAFDLFNIMNML----GVVP-DTNTQDAIIMGLKRIAAFQESHFVLRGMAEK---GLTPK-CTQ  878 (1211)
Q Consensus       808 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~---g~~p~-~~~  878 (1211)
                      +++.++.+|...|++++|++.|+++++.    +..+ ...++..++.+|...|++++|+..|+++++.   ...|. ..+
T Consensus       184 ~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~  263 (378)
T 3q15_A          184 SLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKV  263 (378)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHH
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHH
Confidence            6778888999999999999999888652    1111 1457888999999999999999999998861   12233 477


Q ss_pred             HHHHHHHHHhcCChhhHHHHHHHHHHcC----CCCchHHHHHHHHHHHhcCC---HHHHHHHHHHHHhCCccc-CHHHHH
Q 000951          879 YITLINGMCRVGNFQGAFKLKDEMEALG----ISSSDVAESAMVRGLAHCGK---VEEAMLVLNRMLRMRLVP-TIATFT  950 (1211)
Q Consensus       879 ~~~l~~~~~~~g~~~eA~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~g~---~~eA~~~~~~~~~~~~~p-~~~~~~  950 (1211)
                      +..++.++.+.|++++|...++++++..    .+.....+..+...+...|+   +.+|+..+++.   +..| ....+.
T Consensus       264 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~  340 (378)
T 3q15_A          264 LFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK---NLHAYIEACAR  340 (378)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT---TCHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC---CChhHHHHHHH
Confidence            8899999999999999999999998642    22223456677778888888   88888887762   2222 446778


Q ss_pred             HHHHHhhhhCCHHHHHHHHHHHHh
Q 000951          951 TLIHKFCKEAKFVDALKLKGTMEL  974 (1211)
Q Consensus       951 ~L~~~~~~~g~~~~A~~~~~~~~~  974 (1211)
                      .++..|...|++++|...|+....
T Consensus       341 ~la~~y~~~g~~~~A~~~~~~al~  364 (378)
T 3q15_A          341 SAAAVFESSCHFEQAAAFYRKVLK  364 (378)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHH
Confidence            899999999999999999876543

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.36  E-value=4.3e-11  Score=126.09  Aligned_cols=151  Identities=12%  Similarity=0.001  Sum_probs=71.9

Q ss_pred             hhHHHHHHHHHhcCcHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhcchhhHHHHHHHHHHcCCCCCh-hHHHHHHHH
Q 000951          807 FTFNVLMRKCCEAGEMGKAFDLFNIMNMLGVVPDTNTQDAIIMGLKRIAAFQESHFVLRGMAEKGLTPKC-TQYITLING  885 (1211)
Q Consensus       807 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~g~~p~~-~~~~~l~~~  885 (1211)
                      ..+..++..|...|++++|++.|+++++....++...+..++.+|...|++++|+..|+++++  ..|+. .++..++.+
T Consensus         8 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~l~~~   85 (228)
T 4i17_A            8 NQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIK--KNYNLANAYIGKSAA   85 (228)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTCSHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHH--hCcchHHHHHHHHHH
Confidence            344444444444444444444444444432223344444444444455555555555555444  44432 444455555


Q ss_pred             HHhcCChhhHHHHHHHHHHcCCCCch-------HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCccc-CHHHHHHHHHHhh
Q 000951          886 MCRVGNFQGAFKLKDEMEALGISSSD-------VAESAMVRGLAHCGKVEEAMLVLNRMLRMRLVP-TIATFTTLIHKFC  957 (1211)
Q Consensus       886 ~~~~g~~~eA~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~p-~~~~~~~L~~~~~  957 (1211)
                      +...|++++|+..|+++++.. +.+.       .++..++..+...|++++|++.|+++++.+|.. +..+|..++.+|.
T Consensus        86 ~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~  164 (228)
T 4i17_A           86 YRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVLFY  164 (228)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHH
T ss_pred             HHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHH
Confidence            555555555555555554431 2222       234555555555555666666665555543210 2345555555554


Q ss_pred             hhC
Q 000951          958 KEA  960 (1211)
Q Consensus       958 ~~g  960 (1211)
                      ..|
T Consensus       165 ~~~  167 (228)
T 4i17_A          165 NNG  167 (228)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            443

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.36  E-value=3.3e-11  Score=126.95  Aligned_cols=205  Identities=6%  Similarity=-0.120  Sum_probs=115.8

Q ss_pred             CHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHhhHHHHH
Q 000951          735 SLATYNILLHGYSKKKDLLMCSMLLNTMKMEGLLPDKLTCHSLILGFCETGMLEVGFKFLKKMIAEGTMV-DCFTFNVLM  813 (1211)
Q Consensus       735 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~  813 (1211)
                      |+..+..++..+...|++++|+..|+++++....++...+..++.++...|++++|++.++++++.  .| +..++..++
T Consensus         6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~   83 (228)
T 4i17_A            6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKK--NYNLANAYIGKS   83 (228)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TCSHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHh--CcchHHHHHHHH
Confidence            556677777777777777777777777776432245555555667777777777777777777763  23 345666667


Q ss_pred             HHHHhcCcHHHHHHHHHHHHHCCCCCCh-------hhHHHHHHHHHhhcchhhHHHHHHHHHHcCCCCC--h-hHHHHHH
Q 000951          814 RKCCEAGEMGKAFDLFNIMNMLGVVPDT-------NTQDAIIMGLKRIAAFQESHFVLRGMAEKGLTPK--C-TQYITLI  883 (1211)
Q Consensus       814 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~eA~~~~~~~~~~g~~p~--~-~~~~~l~  883 (1211)
                      .+|...|++++|++.|+++++.. +.+.       ..|..++..+...|++++|+..|+++++  ..|+  . .++..++
T Consensus        84 ~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~~~l~  160 (228)
T 4i17_A           84 AAYRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATD--VTSKKWKTDALYSLG  160 (228)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTT--SSCHHHHHHHHHHHH
T ss_pred             HHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHh--cCCCcccHHHHHHHH
Confidence            77777777777777777766532 1223       3455566666666666666666666665  5555  3 4555555


Q ss_pred             HHHHhcCChhhHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCcccCHHHHHHHH
Q 000951          884 NGMCRVGNFQGAFKLKDEMEALGISSSDVAESAMVRGLAHCGKVEEAMLVLNRMLRMRLVPTIATFTTLI  953 (1211)
Q Consensus       884 ~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~p~~~~~~~L~  953 (1211)
                      .++...|     ...++++...+ +.+...+...  .....+.+++|+..|+++++..|. +..+...+.
T Consensus       161 ~~~~~~~-----~~~~~~a~~~~-~~~~~~~~~~--~~~~~~~~~~A~~~~~~a~~l~p~-~~~~~~~l~  221 (228)
T 4i17_A          161 VLFYNNG-----ADVLRKATPLA-SSNKEKYASE--KAKADAAFKKAVDYLGEAVTLSPN-RTEIKQMQD  221 (228)
T ss_dssp             HHHHHHH-----HHHHHHHGGGT-TTCHHHHHHH--HHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred             HHHHHHH-----HHHHHHHHhcc-cCCHHHHHHH--HHHHHHHHHHHHHHHHHHhhcCCC-CHHHHHHHH
Confidence            5554333     23333333332 1122222211  122334455666666666655544 444444443

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=99.33  E-value=2e-10  Score=131.37  Aligned_cols=268  Identities=12%  Similarity=-0.048  Sum_probs=167.4

Q ss_pred             HHHHHHccCChHHHHHHHHHHHHCCCCCCHH----HHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-CC----HhhHHHH
Q 000951          742 LLHGYSKKKDLLMCSMLLNTMKMEGLLPDKL----TCHSLILGFCETGMLEVGFKFLKKMIAEGTM-VD----CFTFNVL  812 (1211)
Q Consensus       742 l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~----~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~----~~~~~~l  812 (1211)
                      +...+...|++++|...++++++.....+..    ++..+...+...|++++|...+++++..... .+    ..++..+
T Consensus        20 ~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l   99 (373)
T 1hz4_A           20 RAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQ   99 (373)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence            3444555666666666666666532111221    3444556666677777777777766653110 11    1234556


Q ss_pred             HHHHHhcCcHHHHHHHHHHHHHC----CCC--C-ChhhHHHHHHHHHhhcchhhHHHHHHHHHHcCCC--C-C-hhHHHH
Q 000951          813 MRKCCEAGEMGKAFDLFNIMNML----GVV--P-DTNTQDAIIMGLKRIAAFQESHFVLRGMAEKGLT--P-K-CTQYIT  881 (1211)
Q Consensus       813 ~~~~~~~g~~~~A~~~~~~~~~~----~~~--~-~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~g~~--p-~-~~~~~~  881 (1211)
                      +.++...|++++|++.++++.+.    +..  | ....+..++..|...|++++|...+++.++....  | . ..++..
T Consensus       100 a~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  179 (373)
T 1hz4_A          100 SEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAM  179 (373)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHH
Confidence            66777777777777777766531    111  2 1345566777777888888888888887762221  1 1 245777


Q ss_pred             HHHHHHhcCChhhHHHHHHHHHHcCCCC-chHHHH-----HHHHHHHhcCCHHHHHHHHHHHHhCCccc---CHHHHHHH
Q 000951          882 LINGMCRVGNFQGAFKLKDEMEALGISS-SDVAES-----AMVRGLAHCGKVEEAMLVLNRMLRMRLVP---TIATFTTL  952 (1211)
Q Consensus       882 l~~~~~~~g~~~eA~~~~~~~~~~~~~~-~~~~~~-----~l~~~~~~~g~~~eA~~~~~~~~~~~~~p---~~~~~~~L  952 (1211)
                      ++.++...|++++|...++++.+....+ ....+.     ..+..+...|++++|...++++++..+.+   ....+..+
T Consensus       180 la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~l  259 (373)
T 1hz4_A          180 LIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNI  259 (373)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHH
Confidence            8888888888888888888886532111 111121     23445778899999999988887754332   13356788


Q ss_pred             HHHhhhhCCHHHHHHHHHHHHhc----CCCCchH-HHHHHHHHHHhCCChhHHHHHHHHHHH
Q 000951          953 IHKFCKEAKFVDALKLKGTMELS----GVKLDVV-SYNVLISGLCANGDVMPAFELYEEMKH 1009 (1211)
Q Consensus       953 ~~~~~~~g~~~~A~~~~~~~~~~----~~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~ 1009 (1211)
                      +.++...|++++|...++.....    +..++.. .+..++.+|...|++++|...++...+
T Consensus       260 a~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~  321 (373)
T 1hz4_A          260 ARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK  321 (373)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence            88888899999998887765432    1111222 556777788888999999988887654

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=99.30  E-value=3.5e-11  Score=131.97  Aligned_cols=188  Identities=11%  Similarity=-0.017  Sum_probs=118.1

Q ss_pred             HHhcCcHHHHHHHHHHHHHC----CCCCC-hhhHHHHHHHHHhhcchhhHHHHHHHHHHcCCCC---C----hhHHHHHH
Q 000951          816 CCEAGEMGKAFDLFNIMNML----GVVPD-TNTQDAIIMGLKRIAAFQESHFVLRGMAEKGLTP---K----CTQYITLI  883 (1211)
Q Consensus       816 ~~~~g~~~~A~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~g~~p---~----~~~~~~l~  883 (1211)
                      |...|++++|++.|+++.+.    +-.++ ..+|+.++.+|...|++++|+..|+++++  +.|   +    ..++..++
T Consensus        47 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~--l~~~~g~~~~~a~~~~~lg  124 (292)
T 1qqe_A           47 YRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQ--IFTHRGQFRRGANFKFELG  124 (292)
T ss_dssp             HHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHHHTTCHHHHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--HHHHcCCHHHHHHHHHHHH
Confidence            44445555555555444321    10111 34555666666666666666666666654  222   1    24677888


Q ss_pred             HHHHhc-CChhhHHHHHHHHHHcCCCC-c----hHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCcccCH------HHHHH
Q 000951          884 NGMCRV-GNFQGAFKLKDEMEALGISS-S----DVAESAMVRGLAHCGKVEEAMLVLNRMLRMRLVPTI------ATFTT  951 (1211)
Q Consensus       884 ~~~~~~-g~~~eA~~~~~~~~~~~~~~-~----~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~p~~------~~~~~  951 (1211)
                      .+|... |++++|+..|+++++..... +    ..++..++.++.+.|++++|+..|+++++..+....      ..|..
T Consensus       125 ~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~  204 (292)
T 1qqe_A          125 EILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLK  204 (292)
T ss_dssp             HHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHH
T ss_pred             HHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHH
Confidence            888885 88888888888887542111 1    346778888999999999999999999987655322      15788


Q ss_pred             HHHHhhhhCCHHHHHHHHHHHHhcCCCCchH------HHHHHHHHHH--hCCChhHHHHHHHHH
Q 000951          952 LIHKFCKEAKFVDALKLKGTMELSGVKLDVV------SYNVLISGLC--ANGDVMPAFELYEEM 1007 (1211)
Q Consensus       952 L~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~------~~~~l~~~~~--~~g~~~~a~~~~~~~ 1007 (1211)
                      ++.++...|++++|+..|+...  .+.|+..      .+..++.+|.  ..+++++|++.++.+
T Consensus       205 lg~~~~~~g~~~~A~~~~~~al--~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~  266 (292)
T 1qqe_A          205 KGLCQLAATDAVAAARTLQEGQ--SEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNF  266 (292)
T ss_dssp             HHHHHHHTTCHHHHHHHHHGGG--CC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTS
T ss_pred             HHHHHHHcCCHHHHHHHHHHHH--hhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccC
Confidence            8888999999999999887554  3466533      1334555554  346788888887665

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=99.28  E-value=4.9e-11  Score=130.85  Aligned_cols=198  Identities=9%  Similarity=-0.089  Sum_probs=128.0

Q ss_pred             HHHhcCChHHHHHHHHHHHHc----CCCCC-HhhHHHHHHHHHhcCcHHHHHHHHHHHHHCCCC-CC----hhhHHHHHH
Q 000951          780 GFCETGMLEVGFKFLKKMIAE----GTMVD-CFTFNVLMRKCCEAGEMGKAFDLFNIMNMLGVV-PD----TNTQDAIIM  849 (1211)
Q Consensus       780 ~~~~~g~~~~A~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~----~~~~~~l~~  849 (1211)
                      .|...|++++|+..|+++++.    +-+++ ..+++.++.+|...|++++|++.|+++++.... .+    ..++..++.
T Consensus        46 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~  125 (292)
T 1qqe_A           46 IYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGE  125 (292)
T ss_dssp             HHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            445566666666666666543    11111 345666667777777777777777766542110 01    346777888


Q ss_pred             HHHhh-cchhhHHHHHHHHHHcCCCCC-------hhHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCch------HHHH
Q 000951          850 GLKRI-AAFQESHFVLRGMAEKGLTPK-------CTQYITLINGMCRVGNFQGAFKLKDEMEALGISSSD------VAES  915 (1211)
Q Consensus       850 ~~~~~-g~~~eA~~~~~~~~~~g~~p~-------~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~------~~~~  915 (1211)
                      +|... |++++|+..|+++++  +.|+       ..++..++.++...|++++|+..|+++.+.......      ..+.
T Consensus       126 ~~~~~lg~~~~A~~~~~~Al~--~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  203 (292)
T 1qqe_A          126 ILENDLHDYAKAIDCYELAGE--WYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFL  203 (292)
T ss_dssp             HHHHTTCCHHHHHHHHHHHHH--HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHH
T ss_pred             HHHHhhcCHHHHHHHHHHHHH--HHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHH
Confidence            88885 888888888888887  3331       246788888999999999999999998875422221      1567


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhCCccc-C---HHHHHHHHHHhh--hhCCHHHHHHHHHHHHhcCCCCch
Q 000951          916 AMVRGLAHCGKVEEAMLVLNRMLRMRLVP-T---IATFTTLIHKFC--KEAKFVDALKLKGTMELSGVKLDV  981 (1211)
Q Consensus       916 ~l~~~~~~~g~~~eA~~~~~~~~~~~~~p-~---~~~~~~L~~~~~--~~g~~~~A~~~~~~~~~~~~~p~~  981 (1211)
                      .++.++...|++++|+..|+++++..|.- +   ...+..++..+.  ..+++++|+..|+.+.  .++|+.
T Consensus       204 ~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~--~l~~~~  273 (292)
T 1qqe_A          204 KKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFM--RLDKWK  273 (292)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSS--CCCHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCC--ccHHHH
Confidence            78888999999999999999998866441 1   123445566554  4567888888876443  235543

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.28  E-value=7.4e-11  Score=119.32  Aligned_cols=155  Identities=13%  Similarity=0.045  Sum_probs=61.9

Q ss_pred             HHHHHHHhcCcHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhcchhhHHHHHHHHHHcCCCCC-hhHHHHHHHHHHhc
Q 000951          811 VLMRKCCEAGEMGKAFDLFNIMNMLGVVPDTNTQDAIIMGLKRIAAFQESHFVLRGMAEKGLTPK-CTQYITLINGMCRV  889 (1211)
Q Consensus       811 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~  889 (1211)
                      .++..+...|++++|++.|+++.+.. +.+...+..++..|...|++++|+..++++++  ..|+ ...+..++..+...
T Consensus        13 ~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~~a~~~~~~   89 (186)
T 3as5_A           13 DKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLA--DAPDNVKVATVLGLTYVQV   89 (186)
T ss_dssp             HHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHHh
Confidence            33334444444444444444433211 11233333444444444444444444444443  2232 23333444444444


Q ss_pred             CChhhHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCcccCHHHHHHHHHHhhhhCCHHHHHHHH
Q 000951          890 GNFQGAFKLKDEMEALGISSSDVAESAMVRGLAHCGKVEEAMLVLNRMLRMRLVPTIATFTTLIHKFCKEAKFVDALKLK  969 (1211)
Q Consensus       890 g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~p~~~~~~~L~~~~~~~g~~~~A~~~~  969 (1211)
                      |++++|.+.++++.+. .+.+..++..++.++...|++++|++.++++++..+. +..++..++.++...|++++|...+
T Consensus        90 ~~~~~A~~~~~~~~~~-~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~  167 (186)
T 3as5_A           90 QKYDLAVPLLIKVAEA-NPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPN-EGKVHRAIAFSYEQMGRHEEALPHF  167 (186)
T ss_dssp             TCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHhc-CcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHcCCHHHHHHHH
Confidence            4444444444444333 1223333444444444444444444444444443322 3344444444444444444444444


Q ss_pred             H
Q 000951          970 G  970 (1211)
Q Consensus       970 ~  970 (1211)
                      +
T Consensus       168 ~  168 (186)
T 3as5_A          168 K  168 (186)
T ss_dssp             H
T ss_pred             H
Confidence            3

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=99.28  E-value=6.2e-10  Score=127.26  Aligned_cols=236  Identities=10%  Similarity=-0.025  Sum_probs=127.9

Q ss_pred             HHHHHHHHHccCChHHHHHHHHHHHHCCC-CCCH----HHHHHHHHHHHhcCChHHHHHHHHHHHHc----CCC--C-CH
Q 000951          739 YNILLHGYSKKKDLLMCSMLLNTMKMEGL-LPDK----LTCHSLILGFCETGMLEVGFKFLKKMIAE----GTM--V-DC  806 (1211)
Q Consensus       739 ~~~l~~~~~~~g~~~~A~~~~~~~~~~g~-~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~--~-~~  806 (1211)
                      ++.++..+...|++++|...++++++... .++.    .++..+...+...|++++|+..++++++.    +..  | ..
T Consensus        56 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~  135 (373)
T 1hz4_A           56 TSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHE  135 (373)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHH
T ss_pred             HHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHH
Confidence            34444455555555555555555443100 0011    12334455566666666666666665543    111  1 12


Q ss_pred             hhHHHHHHHHHhcCcHHHHHHHHHHHHHCCCCC----ChhhHHHHHHHHHhhcchhhHHHHHHHHHHcCCCCCh-hHHH-
Q 000951          807 FTFNVLMRKCCEAGEMGKAFDLFNIMNMLGVVP----DTNTQDAIIMGLKRIAAFQESHFVLRGMAEKGLTPKC-TQYI-  880 (1211)
Q Consensus       807 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~g~~p~~-~~~~-  880 (1211)
                      ..+..++.+|...|++++|.+.+++..+.....    ...++..++..+...|++++|...++++++....++. ..+. 
T Consensus       136 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~  215 (373)
T 1hz4_A          136 FLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWIS  215 (373)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHH
Confidence            344455566666666666666666665422111    1234556666666677777777777766652112111 1111 


Q ss_pred             ----HHHHHHHhcCChhhHHHHHHHHHHcCCCC---chHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCcc----cCH-HH
Q 000951          881 ----TLINGMCRVGNFQGAFKLKDEMEALGISS---SDVAESAMVRGLAHCGKVEEAMLVLNRMLRMRLV----PTI-AT  948 (1211)
Q Consensus       881 ----~l~~~~~~~g~~~eA~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~----p~~-~~  948 (1211)
                          ..+..+...|++++|...++++......+   ....+..++.++...|++++|...++++++....    ++. .+
T Consensus       216 ~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~  295 (373)
T 1hz4_A          216 NANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRN  295 (373)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHH
Confidence                23334567777777777777765432111   1223456677777778888888777777653211    122 36


Q ss_pred             HHHHHHHhhhhCCHHHHHHHHHHHHh
Q 000951          949 FTTLIHKFCKEAKFVDALKLKGTMEL  974 (1211)
Q Consensus       949 ~~~L~~~~~~~g~~~~A~~~~~~~~~  974 (1211)
                      +..++.++...|++++|...++....
T Consensus       296 ~~~la~~~~~~g~~~~A~~~l~~al~  321 (373)
T 1hz4_A          296 LLLLNQLYWQAGRKSDAQRVLLDALK  321 (373)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence            66778888888888888887775543

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.26  E-value=1.5e-10  Score=117.06  Aligned_cols=163  Identities=8%  Similarity=0.001  Sum_probs=145.1

Q ss_pred             hhhHHHHHHHHHhhcchhhHHHHHHHHHHcCCCCC-hhHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCchHHHHHHHH
Q 000951          841 TNTQDAIIMGLKRIAAFQESHFVLRGMAEKGLTPK-CTQYITLINGMCRVGNFQGAFKLKDEMEALGISSSDVAESAMVR  919 (1211)
Q Consensus       841 ~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~  919 (1211)
                      ...|..++..+...|++++|+..|+++++  ..|+ ..++..++.++...|++++|...++++.+.. +.+..++..++.
T Consensus         8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~   84 (186)
T 3as5_A            8 QVYYRDKGISHAKAGRYSQAVMLLEQVYD--ADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGL   84 (186)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHTTTCC--TTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence            45677888999999999999999999987  6664 5789999999999999999999999998773 667888999999


Q ss_pred             HHHhcCCHHHHHHHHHHHHhCCcccCHHHHHHHHHHhhhhCCHHHHHHHHHHHHhcCCCCc-hHHHHHHHHHHHhCCChh
Q 000951          920 GLAHCGKVEEAMLVLNRMLRMRLVPTIATFTTLIHKFCKEAKFVDALKLKGTMELSGVKLD-VVSYNVLISGLCANGDVM  998 (1211)
Q Consensus       920 ~~~~~g~~~eA~~~~~~~~~~~~~p~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~  998 (1211)
                      .+...|++++|.+.++++++..+. +..++..++.++...|++++|+..++.....  .|+ ...+..++.+|...|+++
T Consensus        85 ~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~  161 (186)
T 3as5_A           85 TYVQVQKYDLAVPLLIKVAEANPI-NFNVRFRLGVALDNLGRFDEAIDSFKIALGL--RPNEGKVHRAIAFSYEQMGRHE  161 (186)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHhcCHHHHHHHHHHHHhcCcH-hHHHHHHHHHHHHHcCcHHHHHHHHHHHHhc--CccchHHHHHHHHHHHHcCCHH
Confidence            999999999999999999998765 8899999999999999999999999887766  564 458899999999999999


Q ss_pred             HHHHHHHHHHH
Q 000951          999 PAFELYEEMKH 1009 (1211)
Q Consensus       999 ~a~~~~~~~~~ 1009 (1211)
                      +|.+.+++..+
T Consensus       162 ~A~~~~~~~~~  172 (186)
T 3as5_A          162 EALPHFKKANE  172 (186)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999998866

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=99.24  E-value=1.2e-10  Score=120.30  Aligned_cols=132  Identities=10%  Similarity=-0.022  Sum_probs=97.2

Q ss_pred             HHHHHHhcCChhhHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCcccCHHHHHHHHHHhhhhCC
Q 000951          882 LINGMCRVGNFQGAFKLKDEMEALGISSSDVAESAMVRGLAHCGKVEEAMLVLNRMLRMRLVPTIATFTTLIHKFCKEAK  961 (1211)
Q Consensus       882 l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~p~~~~~~~L~~~~~~~g~  961 (1211)
                      ++.++...|++++|+..|+++++.. |.+..++..++.++...|++++|+..|+++++.+|. ++.+|..+|.+|...|+
T Consensus        60 lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~~~  137 (208)
T 3urz_A           60 LALAYKKNRNYDKAYLFYKELLQKA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEAD-NLAANIFLGNYYYLTAE  137 (208)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHhH
Confidence            8888888888888888888888763 667778888888888889999999999998888766 78888888888877664


Q ss_pred             H--HHHHHHHHHHHhcCCCCchHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCccChhhH
Q 000951          962 F--VDALKLKGTMELSGVKLDVVSYNVLISGLCANGDVMPAFELYEEMKHKGLCPNSTTY 1019 (1211)
Q Consensus       962 ~--~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~ 1019 (1211)
                      .  +.+...++...  ...|....++.++.++...|++++|+..+++..+  +.|+....
T Consensus       138 ~~~~~~~~~~~~~~--~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~--l~P~~~~~  193 (208)
T 3urz_A          138 QEKKKLETDYKKLS--SPTKMQYARYRDGLSKLFTTRYEKARNSLQKVIL--RFPSTEAQ  193 (208)
T ss_dssp             HHHHHHHHHHC-----CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTT--TSCCHHHH
T ss_pred             HHHHHHHHHHHHHh--CCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCHHHH
Confidence            3  34455544332  1133333566677777788888999988888854  56665433

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.23  E-value=9.7e-11  Score=127.82  Aligned_cols=228  Identities=11%  Similarity=0.020  Sum_probs=162.3

Q ss_pred             HhcCChHHHHHHHHHHHHc-------CCCCCHhhHHHHHHHHHhcCcHHHHHHHHHHHHHC------CCCC-ChhhHHHH
Q 000951          782 CETGMLEVGFKFLKKMIAE-------GTMVDCFTFNVLMRKCCEAGEMGKAFDLFNIMNML------GVVP-DTNTQDAI  847 (1211)
Q Consensus       782 ~~~g~~~~A~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~~~~-~~~~~~~l  847 (1211)
                      ...|++++|+.+++++++.       ..+....++..++.+|...|++++|++.|+++.+.      +-.| ...++..+
T Consensus        12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l   91 (283)
T 3edt_B           12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL   91 (283)
T ss_dssp             -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence            4568888888888887763       11223667888999999999999999999988753      1122 25678899


Q ss_pred             HHHHHhhcchhhHHHHHHHHHHc------CCCCC-hhHHHHHHHHHHhcCChhhHHHHHHHHHHc------C-CCCchHH
Q 000951          848 IMGLKRIAAFQESHFVLRGMAEK------GLTPK-CTQYITLINGMCRVGNFQGAFKLKDEMEAL------G-ISSSDVA  913 (1211)
Q Consensus       848 ~~~~~~~g~~~eA~~~~~~~~~~------g~~p~-~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~------~-~~~~~~~  913 (1211)
                      +..|...|++++|+..|+++++.      .-.|+ ..++..++.++...|++++|...|+++++.      + .+....+
T Consensus        92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  171 (283)
T 3edt_B           92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT  171 (283)
T ss_dssp             HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred             HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence            99999999999999999999873      11343 378889999999999999999999999764      1 1223457


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhCC-------ccc-CHHHHHHHHHHhhhhCCHHHHHHHHHHH---HhcC-CCCch
Q 000951          914 ESAMVRGLAHCGKVEEAMLVLNRMLRMR-------LVP-TIATFTTLIHKFCKEAKFVDALKLKGTM---ELSG-VKLDV  981 (1211)
Q Consensus       914 ~~~l~~~~~~~g~~~eA~~~~~~~~~~~-------~~p-~~~~~~~L~~~~~~~g~~~~A~~~~~~~---~~~~-~~p~~  981 (1211)
                      +..++.++...|++++|+..++++++..       ..+ ....|..++..+...+....+.......   ...+ ..|+.
T Consensus       172 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (283)
T 3edt_B          172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTV  251 (283)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHH
Confidence            7888999999999999999999998741       112 3455666666666555544443332211   1111 12433


Q ss_pred             -HHHHHHHHHHHhCCChhHHHHHHHHHHH
Q 000951          982 -VSYNVLISGLCANGDVMPAFELYEEMKH 1009 (1211)
Q Consensus       982 -~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 1009 (1211)
                       .++..++.+|...|++++|.+++++..+
T Consensus       252 ~~~~~~la~~~~~~g~~~~A~~~~~~al~  280 (283)
T 3edt_B          252 NTTLRSLGALYRRQGKLEAAHTLEDCASR  280 (283)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence             3678889999999999999999988765

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=99.22  E-value=4.8e-11  Score=115.75  Aligned_cols=144  Identities=9%  Similarity=-0.028  Sum_probs=98.5

Q ss_pred             HHHHHHhhcchhhHHHHHHHHHHcCCCCC-hhHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCchHHHHHHHHHHHhcC
Q 000951          847 IIMGLKRIAAFQESHFVLRGMAEKGLTPK-CTQYITLINGMCRVGNFQGAFKLKDEMEALGISSSDVAESAMVRGLAHCG  925 (1211)
Q Consensus       847 l~~~~~~~g~~~eA~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  925 (1211)
                      |+.++...|++++|+..+++.+.  ..|+ ...+..++.+|...|++++|++.|+++++.. |.+..+|..++.+|...|
T Consensus         3 LG~~~~~~~~~e~ai~~~~~a~~--~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~   79 (150)
T 4ga2_A            3 LGSMRRSKADVERYIASVQGSTP--SPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEE   79 (150)
T ss_dssp             ----CCCHHHHHHHHHHHHHHSC--SHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred             hHHHHHHcChHHHHHHHHHHhcc--cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcC
Confidence            45566666777777777777665  5554 3566777777777888888888888777663 556777777888888888


Q ss_pred             CHHHHHHHHHHHHhCCcccCHHHHHHHHHHhhhhCCHHHHHHH-HHHHHhcCCCCchH-HHHHHHHHHHhCCC
Q 000951          926 KVEEAMLVLNRMLRMRLVPTIATFTTLIHKFCKEAKFVDALKL-KGTMELSGVKLDVV-SYNVLISGLCANGD  996 (1211)
Q Consensus       926 ~~~eA~~~~~~~~~~~~~p~~~~~~~L~~~~~~~g~~~~A~~~-~~~~~~~~~~p~~~-~~~~l~~~~~~~g~  996 (1211)
                      ++++|+..|+++++.+|. ++.+|..++.+|.+.|++++|... ++.....  .|+.. +|......+...|+
T Consensus        80 ~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l--~P~~~~~~~l~~~ll~~~G~  149 (150)
T 4ga2_A           80 NTDKAVECYRRSVELNPT-QKDLVLKIAELLCKNDVTDGRAKYWVERAAKL--FPGSPAVYKLKEQLLDCEGE  149 (150)
T ss_dssp             CHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHH--STTCHHHHHHHHHHHHTCCC
T ss_pred             chHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHhCc
Confidence            888888888888877655 777788888888888887776654 3544444  67554 55555556666653

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.19  E-value=2.5e-10  Score=124.49  Aligned_cols=227  Identities=14%  Similarity=0.021  Sum_probs=163.6

Q ss_pred             HccCChHHHHHHHHHHHHC-----C-CCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHc------CCCC-CHhhHHHH
Q 000951          747 SKKKDLLMCSMLLNTMKME-----G-LLP-DKLTCHSLILGFCETGMLEVGFKFLKKMIAE------GTMV-DCFTFNVL  812 (1211)
Q Consensus       747 ~~~g~~~~A~~~~~~~~~~-----g-~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~~~~-~~~~~~~l  812 (1211)
                      ...|++++|+..|+++++.     + -.| ...++..++..|...|++++|+..++++++.      +-.| ...++..+
T Consensus        12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l   91 (283)
T 3edt_B           12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL   91 (283)
T ss_dssp             -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence            4567888888888877752     1 123 3457788899999999999999999999875      1122 35678889


Q ss_pred             HHHHHhcCcHHHHHHHHHHHHHC------CCCC-ChhhHHHHHHHHHhhcchhhHHHHHHHHHHc------CCCCC-hhH
Q 000951          813 MRKCCEAGEMGKAFDLFNIMNML------GVVP-DTNTQDAIIMGLKRIAAFQESHFVLRGMAEK------GLTPK-CTQ  878 (1211)
Q Consensus       813 ~~~~~~~g~~~~A~~~~~~~~~~------~~~~-~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~------g~~p~-~~~  878 (1211)
                      +.+|...|++++|++.|+++.+.      ...| ...++..++..|...|++++|+..|+++++.      +-.|. ..+
T Consensus        92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  171 (283)
T 3edt_B           92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT  171 (283)
T ss_dssp             HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred             HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence            99999999999999999999763      1112 3678899999999999999999999999973      11443 378


Q ss_pred             HHHHHHHHHhcCChhhHHHHHHHHHHc-------C-CCCchHHHHHHHHHHHhcCC------HHHHHHHHHHHHhCCccc
Q 000951          879 YITLINGMCRVGNFQGAFKLKDEMEAL-------G-ISSSDVAESAMVRGLAHCGK------VEEAMLVLNRMLRMRLVP  944 (1211)
Q Consensus       879 ~~~l~~~~~~~g~~~eA~~~~~~~~~~-------~-~~~~~~~~~~l~~~~~~~g~------~~eA~~~~~~~~~~~~~p  944 (1211)
                      +..++.++...|++++|...|+++++.       . .+.....+..+...+...+.      +.++...++......+ .
T Consensus       172 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~  250 (283)
T 3edt_B          172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSP-T  250 (283)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCH-H
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCH-H
Confidence            899999999999999999999999753       1 12223345555555544333      3344444333222222 1


Q ss_pred             CHHHHHHHHHHhhhhCCHHHHHHHHHHHHh
Q 000951          945 TIATFTTLIHKFCKEAKFVDALKLKGTMEL  974 (1211)
Q Consensus       945 ~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~  974 (1211)
                      ...++..++.+|...|++++|...++....
T Consensus       251 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~  280 (283)
T 3edt_B          251 VNTTLRSLGALYRRQGKLEAAHTLEDCASR  280 (283)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            567899999999999999999999886553

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=99.18  E-value=4.8e-11  Score=115.77  Aligned_cols=145  Identities=6%  Similarity=-0.128  Sum_probs=115.3

Q ss_pred             HHHHHHhcCcHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhcchhhHHHHHHHHHHcCCCCC-hhHHHHHHHHHHhcC
Q 000951          812 LMRKCCEAGEMGKAFDLFNIMNMLGVVPDTNTQDAIIMGLKRIAAFQESHFVLRGMAEKGLTPK-CTQYITLINGMCRVG  890 (1211)
Q Consensus       812 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g  890 (1211)
                      |+.++...|++++|++.+++..... +.+...+..++..|.+.|++++|+..|+++++  ++|+ ..+|..++.++...|
T Consensus         3 LG~~~~~~~~~e~ai~~~~~a~~~~-p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~--~~p~~~~a~~~lg~~~~~~~   79 (150)
T 4ga2_A            3 LGSMRRSKADVERYIASVQGSTPSP-RQKSIKGFYFAKLYYEAKEYDLAKKYICTYIN--VQERDPKAHRFLGLLYELEE   79 (150)
T ss_dssp             ----CCCHHHHHHHHHHHHHHSCSH-HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTT
T ss_pred             hHHHHHHcChHHHHHHHHHHhcccC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcC
Confidence            5566777888889988888876421 12366778888999999999999999999998  7885 488889999999999


Q ss_pred             ChhhHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHH-HHHHHhCCcccCHHHHHHHHHHhhhhCC
Q 000951          891 NFQGAFKLKDEMEALGISSSDVAESAMVRGLAHCGKVEEAMLV-LNRMLRMRLVPTIATFTTLIHKFCKEAK  961 (1211)
Q Consensus       891 ~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~-~~~~~~~~~~p~~~~~~~L~~~~~~~g~  961 (1211)
                      ++++|+..|+++++.. |.+..++..++.+|.+.|++++|.+. ++++++.+|. ++.+|...+.++...|+
T Consensus        80 ~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~-~~~~~~l~~~ll~~~G~  149 (150)
T 4ga2_A           80 NTDKAVECYRRSVELN-PTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPG-SPAVYKLKEQLLDCEGE  149 (150)
T ss_dssp             CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTT-CHHHHHHHHHHHHTCCC
T ss_pred             chHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHhCc
Confidence            9999999999998873 56778889999999999998876655 5889988766 88888888888877775

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.17  E-value=4.3e-10  Score=121.20  Aligned_cols=189  Identities=10%  Similarity=0.048  Sum_probs=121.6

Q ss_pred             CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC---HhhHHHHHHHHHhcCcHHHHHHHHHHHHHCCCC-CC-hhhH
Q 000951          770 DKLTCHSLILGFCETGMLEVGFKFLKKMIAEGTMVD---CFTFNVLMRKCCEAGEMGKAFDLFNIMNMLGVV-PD-TNTQ  844 (1211)
Q Consensus       770 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~-~~~~  844 (1211)
                      +...+..++..+...|++++|+..|+++++... .+   ..++..++.+|.+.|++++|++.|+++++..+. |. ...+
T Consensus        14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~   92 (261)
T 3qky_A           14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGR-THEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAE   92 (261)
T ss_dssp             SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCS-CSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred             CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC-CCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHH
Confidence            455666677788888888888888888887532 22   556777788888888888888888888764321 12 4567


Q ss_pred             HHHHHHHHh--------hcchhhHHHHHHHHHHcCCCCCh-hHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCchHHHH
Q 000951          845 DAIIMGLKR--------IAAFQESHFVLRGMAEKGLTPKC-TQYITLINGMCRVGNFQGAFKLKDEMEALGISSSDVAES  915 (1211)
Q Consensus       845 ~~l~~~~~~--------~g~~~eA~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~  915 (1211)
                      ..++.++..        .|++++|+..|+++++  ..|+. .....+..              +..+..    .....+.
T Consensus        93 ~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~--~~p~~~~~~~a~~~--------------~~~~~~----~~~~~~~  152 (261)
T 3qky_A           93 YERAMCYYKLSPPYELDQTDTRKAIEAFQLFID--RYPNHELVDDATQK--------------IRELRA----KLARKQY  152 (261)
T ss_dssp             HHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHH--HCTTCTTHHHHHHH--------------HHHHHH----HHHHHHH
T ss_pred             HHHHHHHHHhcccccccchhHHHHHHHHHHHHH--HCcCchhHHHHHHH--------------HHHHHH----HHHHHHH
Confidence            777777777        8888888888888887  55653 22211111              111100    0011245


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhCCccc--CHHHHHHHHHHhhhh----------CCHHHHHHHHHHHHhcCCCCch
Q 000951          916 AMVRGLAHCGKVEEAMLVLNRMLRMRLVP--TIATFTTLIHKFCKE----------AKFVDALKLKGTMELSGVKLDV  981 (1211)
Q Consensus       916 ~l~~~~~~~g~~~eA~~~~~~~~~~~~~p--~~~~~~~L~~~~~~~----------g~~~~A~~~~~~~~~~~~~p~~  981 (1211)
                      .++.+|...|++++|+..|+++++..|..  ...++..++.+|...          |++++|+..|+.....  .|+.
T Consensus       153 ~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~  228 (261)
T 3qky_A          153 EAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI--FPDS  228 (261)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH--CTTC
T ss_pred             HHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH--CCCC
Confidence            56777777777777777777777765432  235667777777655          7777777777766554  5644

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.17  E-value=8e-10  Score=119.04  Aligned_cols=211  Identities=9%  Similarity=-0.066  Sum_probs=155.9

Q ss_pred             CHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-CC-Hhh
Q 000951          735 SLATYNILLHGYSKKKDLLMCSMLLNTMKMEGLLPD----KLTCHSLILGFCETGMLEVGFKFLKKMIAEGTM-VD-CFT  808 (1211)
Q Consensus       735 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~-~~~  808 (1211)
                      +...+..++..+.+.|++++|+..|+++++.  .|+    ...+..++.+|...|++++|+..|+++++.... +. ..+
T Consensus        14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a   91 (261)
T 3qky_A           14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTY--GRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQA   91 (261)
T ss_dssp             SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGG--CSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred             CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHH
Confidence            6888899999999999999999999999984  453    467778899999999999999999999996321 12 557


Q ss_pred             HHHHHHHHHh--------cCcHHHHHHHHHHHHHCCCCCC-hhhHHHHHHHHHhhcchhhHHHHHHHHHHcCCCCChhHH
Q 000951          809 FNVLMRKCCE--------AGEMGKAFDLFNIMNMLGVVPD-TNTQDAIIMGLKRIAAFQESHFVLRGMAEKGLTPKCTQY  879 (1211)
Q Consensus       809 ~~~l~~~~~~--------~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~g~~p~~~~~  879 (1211)
                      +..++.+|..        .|++++|++.|+++++..  |+ ...+..+.......+.       +           ...+
T Consensus        92 ~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~a~~~~~~~~~~-------~-----------~~~~  151 (261)
T 3qky_A           92 EYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY--PNHELVDDATQKIRELRAK-------L-----------ARKQ  151 (261)
T ss_dssp             HHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC--TTCTTHHHHHHHHHHHHHH-------H-----------HHHH
T ss_pred             HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC--cCchhHHHHHHHHHHHHHH-------H-----------HHHH
Confidence            7888899999        999999999999998743  43 2333222211111100       0           1236


Q ss_pred             HHHHHHHHhcCChhhHHHHHHHHHHcCCCC--chHHHHHHHHHHHhc----------CCHHHHHHHHHHHHhCCcccC--
Q 000951          880 ITLINGMCRVGNFQGAFKLKDEMEALGISS--SDVAESAMVRGLAHC----------GKVEEAMLVLNRMLRMRLVPT--  945 (1211)
Q Consensus       880 ~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~----------g~~~eA~~~~~~~~~~~~~p~--  945 (1211)
                      ..++.+|...|++++|+..|+++++.....  ...++..++.+|...          |++++|+..|+++++..|...  
T Consensus       152 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~  231 (261)
T 3qky_A          152 YEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLL  231 (261)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHH
T ss_pred             HHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHH
Confidence            778888999999999999999998753211  355788888888866          889999999999998775521  


Q ss_pred             HHHHHHHHHHhhhhCCHHHHHH
Q 000951          946 IATFTTLIHKFCKEAKFVDALK  967 (1211)
Q Consensus       946 ~~~~~~L~~~~~~~g~~~~A~~  967 (1211)
                      ..+...+..++...|+++++..
T Consensus       232 ~~a~~~l~~~~~~~~~~~~~~~  253 (261)
T 3qky_A          232 RTAEELYTRARQRLTELEGDAS  253 (261)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCTT
T ss_pred             HHHHHHHHHHHHHHHHhhhhhH
Confidence            2455566666666666655443

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=99.17  E-value=6e-09  Score=112.53  Aligned_cols=229  Identities=9%  Similarity=-0.011  Sum_probs=165.2

Q ss_pred             hHHHHHHHHHHHHcCCCCC-HhhHHHHHHHHHhcC--cHHHHHHHHHHHHHCCCCCChhhHHHHHHHH----Hhh---cc
Q 000951          787 LEVGFKFLKKMIAEGTMVD-CFTFNVLMRKCCEAG--EMGKAFDLFNIMNMLGVVPDTNTQDAIIMGL----KRI---AA  856 (1211)
Q Consensus       787 ~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~---g~  856 (1211)
                      .++|++.+++++..  .|+ ..+|+....++...|  +++++++.++.++... +.+..+|+.-..++    ...   ++
T Consensus        49 s~~aL~~t~~~L~~--nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~l~~~~~  125 (306)
T 3dra_A           49 SERALHITELGINE--LASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMELNNNDFD  125 (306)
T ss_dssp             SHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHTTTCCC
T ss_pred             CHHHHHHHHHHHHH--CcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHhccccCC
Confidence            35677777777773  343 456677777777777  7777777777777643 23456666666655    444   67


Q ss_pred             hhhHHHHHHHHHHcCCCCC-hhHHHHHHHHHHhcCChh--hHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCC------H
Q 000951          857 FQESHFVLRGMAEKGLTPK-CTQYITLINGMCRVGNFQ--GAFKLKDEMEALGISSSDVAESAMVRGLAHCGK------V  927 (1211)
Q Consensus       857 ~~eA~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~--eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~------~  927 (1211)
                      +++++.+++++++  .+|. ..+|.....++.+.|.++  ++++.++++++.+ +.+..+|+..+.++...|+      +
T Consensus       126 ~~~EL~~~~~~l~--~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d-~~N~sAW~~R~~ll~~l~~~~~~~~~  202 (306)
T 3dra_A          126 PYREFDILEAMLS--SDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD-LKNNSAWSHRFFLLFSKKHLATDNTI  202 (306)
T ss_dssp             THHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHSSGGGCCHHHH
T ss_pred             HHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccchhhhH
Confidence            7888888888888  7775 477888888888888888  8888888888764 6677788888888888776      8


Q ss_pred             HHHHHHHHHHHhCCcccCHHHHHHHHHHhhhhCCHHHHH-HHHHHHHhcC-CCC-chHHHHHHHHHHHhCCChhHHHHHH
Q 000951          928 EEAMLVLNRMLRMRLVPTIATFTTLIHKFCKEAKFVDAL-KLKGTMELSG-VKL-DVVSYNVLISGLCANGDVMPAFELY 1004 (1211)
Q Consensus       928 ~eA~~~~~~~~~~~~~p~~~~~~~L~~~~~~~g~~~~A~-~~~~~~~~~~-~~p-~~~~~~~l~~~~~~~g~~~~a~~~~ 1004 (1211)
                      +++++.++++++.+|. |..+|+.+..++.+.|+..++. .........+ ..| +...+..++.+|...|+.++|++++
T Consensus       203 ~eEl~~~~~aI~~~p~-n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~  281 (306)
T 3dra_A          203 DEELNYVKDKIVKCPQ-NPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVY  281 (306)
T ss_dssp             HHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCC-CccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Confidence            8999999999998877 8999999999998888855544 4544333321 124 3447888888998999999999999


Q ss_pred             HHHHHcCCccCh-hhHHHHH
Q 000951         1005 EEMKHKGLCPNS-TTYSVLI 1023 (1211)
Q Consensus      1005 ~~~~~~g~~p~~-~~~~~l~ 1023 (1211)
                      +.+.+ .+.|.. .-|....
T Consensus       282 ~~l~~-~~Dpir~~yW~~~~  300 (306)
T 3dra_A          282 DLLKS-KYNPIRSNFWDYQI  300 (306)
T ss_dssp             HHHHH-TTCGGGHHHHHHHH
T ss_pred             HHHHh-ccChHHHHHHHHHH
Confidence            98864 245554 5555443

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=99.15  E-value=6e-10  Score=115.04  Aligned_cols=137  Identities=7%  Similarity=-0.024  Sum_probs=94.5

Q ss_pred             HHHHHHHhhcchhhHHHHHHHHHHcCCCCC-hhHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCchHHHHHHHHHHHhc
Q 000951          846 AIIMGLKRIAAFQESHFVLRGMAEKGLTPK-CTQYITLINGMCRVGNFQGAFKLKDEMEALGISSSDVAESAMVRGLAHC  924 (1211)
Q Consensus       846 ~l~~~~~~~g~~~eA~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  924 (1211)
                      .++.+|.+.|++++|+..|+++++  +.|+ ...+..++.++...|++++|+..|+++++.. |.+..++..++.+|...
T Consensus        59 ~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~  135 (208)
T 3urz_A           59 ELALAYKKNRNYDKAYLFYKELLQ--KAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLT  135 (208)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHH
Confidence            377777788888888888888887  6775 4777788888888888888888888887763 55677777888777665


Q ss_pred             CC--HHHHHHHHHHHHhCCcccCHHHHHHHHHHhhhhCCHHHHHHHHHHHHhcCCCCchHHHHHHHH
Q 000951          925 GK--VEEAMLVLNRMLRMRLVPTIATFTTLIHKFCKEAKFVDALKLKGTMELSGVKLDVVSYNVLIS  989 (1211)
Q Consensus       925 g~--~~eA~~~~~~~~~~~~~p~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~  989 (1211)
                      |+  .+++...+++++.  +.|....+..++.++...|++++|+..|+.....  .|+......+..
T Consensus       136 ~~~~~~~~~~~~~~~~~--~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l--~P~~~~~~~l~~  198 (208)
T 3urz_A          136 AEQEKKKLETDYKKLSS--PTKMQYARYRDGLSKLFTTRYEKARNSLQKVILR--FPSTEAQKTLDK  198 (208)
T ss_dssp             HHHHHHHHHHHHC---C--CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTT--SCCHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhC--CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCHHHHHHHHH
Confidence            54  4456666666643  3334456667777777888888888887755544  777655444444

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.15  E-value=2.4e-10  Score=140.88  Aligned_cols=172  Identities=9%  Similarity=-0.066  Sum_probs=87.5

Q ss_pred             HhcCChHHHHHHHHHHH--------HcCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHh
Q 000951          782 CETGMLEVGFKFLKKMI--------AEGTMVDCFTFNVLMRKCCEAGEMGKAFDLFNIMNMLGVVPDTNTQDAIIMGLKR  853 (1211)
Q Consensus       782 ~~~g~~~~A~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~  853 (1211)
                      ...|++++|++.+++++        +. .+.+...+..++.+|...|++++|++.|+++++.. +.+...|..++.+|..
T Consensus       402 ~~~~~~~~A~~~~~~al~~~~~~~~~~-~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~  479 (681)
T 2pzi_A          402 TVLSQPVQTLDSLRAARHGALDADGVD-FSESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELL  479 (681)
T ss_dssp             TTTCCHHHHHHHHHHHHTC-------C-CTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHH
T ss_pred             ccccCHHHHHHHHHHhhhhcccccccc-cccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHH
Confidence            45566666666666666        21 12234455555555666666666666666555422 1234455555555555


Q ss_pred             hcchhhHHHHHHHHHHcCCCCCh-hHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHH
Q 000951          854 IAAFQESHFVLRGMAEKGLTPKC-TQYITLINGMCRVGNFQGAFKLKDEMEALGISSSDVAESAMVRGLAHCGKVEEAML  932 (1211)
Q Consensus       854 ~g~~~eA~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~  932 (1211)
                      .|++++|+..|+++++  ++|+. ..+..++.++...|++++ ++.|+++++.+ +.+..++..++.++.+.|++++|++
T Consensus       480 ~g~~~~A~~~~~~al~--l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~  555 (681)
T 2pzi_A          480 TGDYDSATKHFTEVLD--TFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGAVR  555 (681)
T ss_dssp             HTCHHHHHHHHHHHHH--HSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             cCCHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHHH
Confidence            5555555555555555  44532 445555555555555555 55555555442 3344445555555555555555555


Q ss_pred             HHHHHHhCCcccCHHHHHHHHHHhhhhC
Q 000951          933 VLNRMLRMRLVPTIATFTTLIHKFCKEA  960 (1211)
Q Consensus       933 ~~~~~~~~~~~p~~~~~~~L~~~~~~~g  960 (1211)
                      .|+++++.+|. +..+|..++.++...|
T Consensus       556 ~~~~al~l~P~-~~~a~~~~~~~~~~~~  582 (681)
T 2pzi_A          556 TLDEVPPTSRH-FTTARLTSAVTLLSGR  582 (681)
T ss_dssp             HHHTSCTTSTT-HHHHHHHHHHHTC---
T ss_pred             HHHhhcccCcc-cHHHHHHHHHHHHccC
Confidence            55555544433 3444555555544433

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.14  E-value=6.5e-10  Score=137.07  Aligned_cols=172  Identities=10%  Similarity=-0.048  Sum_probs=126.3

Q ss_pred             HccCChHHHHHHHHHHH--------HCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHH
Q 000951          747 SKKKDLLMCSMLLNTMK--------MEGLLP-DKLTCHSLILGFCETGMLEVGFKFLKKMIAEGTMVDCFTFNVLMRKCC  817 (1211)
Q Consensus       747 ~~~g~~~~A~~~~~~~~--------~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~  817 (1211)
                      ...|++++|++.+++++        +  ..| +...+..++.+|...|++++|+..++++++.+ +.+...+..++.+|.
T Consensus       402 ~~~~~~~~A~~~~~~al~~~~~~~~~--~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~  478 (681)
T 2pzi_A          402 TVLSQPVQTLDSLRAARHGALDADGV--DFSESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAEL  478 (681)
T ss_dssp             TTTCCHHHHHHHHHHHHTC---------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHH
T ss_pred             ccccCHHHHHHHHHHhhhhccccccc--ccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHH
Confidence            66788888888888887        4  345 34566677788888888888888888888742 234667788888888


Q ss_pred             hcCcHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhcchhhHHHHHHHHHHcCCCCCh-hHHHHHHHHHHhcCChhhHH
Q 000951          818 EAGEMGKAFDLFNIMNMLGVVPDTNTQDAIIMGLKRIAAFQESHFVLRGMAEKGLTPKC-TQYITLINGMCRVGNFQGAF  896 (1211)
Q Consensus       818 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~eA~  896 (1211)
                      ..|++++|++.|+++++.. +.+...|..++.+|.+.|++++ +..|+++++  ++|+. ..+..++.++...|++++|+
T Consensus       479 ~~g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~--~~P~~~~a~~~lg~~~~~~g~~~~A~  554 (681)
T 2pzi_A          479 LTGDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWS--TNDGVISAAFGLARARSAEGDRVGAV  554 (681)
T ss_dssp             HHTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHH--hCCchHHHHHHHHHHHHHcCCHHHHH
Confidence            8888888888888887643 2346777888888888888888 888888888  77754 77888888888888888888


Q ss_pred             HHHHHHHHcCCCCchHHHHHHHHHHHhcCC
Q 000951          897 KLKDEMEALGISSSDVAESAMVRGLAHCGK  926 (1211)
Q Consensus       897 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~  926 (1211)
                      +.|+++++.+ +.+..++..++.++...|+
T Consensus       555 ~~~~~al~l~-P~~~~a~~~~~~~~~~~~~  583 (681)
T 2pzi_A          555 RTLDEVPPTS-RHFTTARLTSAVTLLSGRS  583 (681)
T ss_dssp             HHHHTSCTTS-TTHHHHHHHHHHHTC----
T ss_pred             HHHHhhcccC-cccHHHHHHHHHHHHccCC
Confidence            8888887652 4446677777777766554

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=99.11  E-value=1.7e-08  Score=109.02  Aligned_cols=223  Identities=4%  Similarity=-0.076  Sum_probs=154.2

Q ss_pred             ChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcC--ChHHHHHHHHHHHHcCCCCCHhhHHHHHHHH----Hhc---C
Q 000951          751 DLLMCSMLLNTMKMEGLLPD-KLTCHSLILGFCETG--MLEVGFKFLKKMIAEGTMVDCFTFNVLMRKC----CEA---G  820 (1211)
Q Consensus       751 ~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~---g  820 (1211)
                      ..++|+..+.+++.  +.|+ ..+|+.-..++...+  ++++++++++.++..+. -+..+|+....++    ...   +
T Consensus        48 ~s~~aL~~t~~~L~--~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nP-k~y~aW~~R~~iL~~~~~~l~~~~  124 (306)
T 3dra_A           48 YSERALHITELGIN--ELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNE-KNYQIWNYRQLIIGQIMELNNNDF  124 (306)
T ss_dssp             CSHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCT-TCCHHHHHHHHHHHHHHHHTTTCC
T ss_pred             CCHHHHHHHHHHHH--HCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCc-ccHHHHHHHHHHHHHHHHhccccC
Confidence            34567777777776  5563 345666666666666  77777777777777532 2345565555555    444   6


Q ss_pred             cHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhcchh--hHHHHHHHHHHcCCCCC-hhHHHHHHHHHHhcCC------
Q 000951          821 EMGKAFDLFNIMNMLGVVPDTNTQDAIIMGLKRIAAFQ--ESHFVLRGMAEKGLTPK-CTQYITLINGMCRVGN------  891 (1211)
Q Consensus       821 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~--eA~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~------  891 (1211)
                      ++++++++++++++.. +.+..+|+.-..++.+.|.++  +++..++++++  .+|. ..+|.....+..+.|.      
T Consensus       125 ~~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~--~d~~N~sAW~~R~~ll~~l~~~~~~~~  201 (306)
T 3dra_A          125 DPYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVID--TDLKNNSAWSHRFFLLFSKKHLATDNT  201 (306)
T ss_dssp             CTHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHSSGGGCCHHH
T ss_pred             CHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhccccchhhh
Confidence            7778888888777644 346777777777777777777  88888888887  6664 4667777777777666      


Q ss_pred             hhhHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCH-HHHHHHHHHHHhCC---cccCHHHHHHHHHHhhhhCCHHHHHH
Q 000951          892 FQGAFKLKDEMEALGISSSDVAESAMVRGLAHCGKV-EEAMLVLNRMLRMR---LVPTIATFTTLIHKFCKEAKFVDALK  967 (1211)
Q Consensus       892 ~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~eA~~~~~~~~~~~---~~p~~~~~~~L~~~~~~~g~~~~A~~  967 (1211)
                      ++++++.+++++... +.+..+|+.+..++.+.|+. ++...+.+++++.+   +. ++.++..++.+|.+.|+.++|++
T Consensus       202 ~~eEl~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~-s~~al~~la~~~~~~~~~~~A~~  279 (306)
T 3dra_A          202 IDEELNYVKDKIVKC-PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVT-SSFALETLAKIYTQQKKYNESRT  279 (306)
T ss_dssp             HHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEES-CHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHHHhC-CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCC-CHHHHHHHHHHHHccCCHHHHHH
Confidence            788888888887763 66777888888888888774 44556777666654   32 77788888888888888888888


Q ss_pred             HHHHHHhcCCCCchH
Q 000951          968 LKGTMELSGVKLDVV  982 (1211)
Q Consensus       968 ~~~~~~~~~~~p~~~  982 (1211)
                      +++.+.. ..+|...
T Consensus       280 ~~~~l~~-~~Dpir~  293 (306)
T 3dra_A          280 VYDLLKS-KYNPIRS  293 (306)
T ss_dssp             HHHHHHH-TTCGGGH
T ss_pred             HHHHHHh-ccChHHH
Confidence            8877654 1366444

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=99.09  E-value=3e-09  Score=111.44  Aligned_cols=83  Identities=6%  Similarity=-0.160  Sum_probs=51.6

Q ss_pred             HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC--HhhHHHHHHHHHhcCcHHHHHHHHHHHHHCCCCCC--hhhHHH
Q 000951          771 KLTCHSLILGFCETGMLEVGFKFLKKMIAEGTMVD--CFTFNVLMRKCCEAGEMGKAFDLFNIMNMLGVVPD--TNTQDA  846 (1211)
Q Consensus       771 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~  846 (1211)
                      ...+..++..+...|++++|+..|+++++......  ...+..++.+|.+.|++++|++.|+++++..+...  ...+..
T Consensus         4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~   83 (225)
T 2yhc_A            4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYM   83 (225)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHH
Confidence            34455566777777888888888888776422211  34666677777778888888888877776432211  124555


Q ss_pred             HHHHHHh
Q 000951          847 IIMGLKR  853 (1211)
Q Consensus       847 l~~~~~~  853 (1211)
                      ++.++..
T Consensus        84 ~g~~~~~   90 (225)
T 2yhc_A           84 RGLTNMA   90 (225)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHh
Confidence            5555554

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=99.08  E-value=3.6e-09  Score=110.77  Aligned_cols=183  Identities=8%  Similarity=-0.030  Sum_probs=116.7

Q ss_pred             HhhHHHHHHHHHhcCcHHHHHHHHHHHHHCCCCCC--hhhHHHHHHHHHhhcchhhHHHHHHHHHHcCCCCCh----hHH
Q 000951          806 CFTFNVLMRKCCEAGEMGKAFDLFNIMNMLGVVPD--TNTQDAIIMGLKRIAAFQESHFVLRGMAEKGLTPKC----TQY  879 (1211)
Q Consensus       806 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~g~~p~~----~~~  879 (1211)
                      ...+..++..+...|++++|++.|+++++......  ...+..++.+|.+.|++++|+..|+++++  ..|+.    .++
T Consensus         4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~--~~P~~~~~~~a~   81 (225)
T 2yhc_A            4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIR--LNPTHPNIDYVM   81 (225)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCTTHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--HCcCCCcHHHHH
Confidence            44566677778888888888888888876432211  35677778888888888888888888887  55543    256


Q ss_pred             HHHHHHHHhcCChhhHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCcccCHHHH----------
Q 000951          880 ITLINGMCRVGNFQGAFKLKDEMEALGISSSDVAESAMVRGLAHCGKVEEAMLVLNRMLRMRLVPTIATF----------  949 (1211)
Q Consensus       880 ~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~p~~~~~----------  949 (1211)
                      ..++.++...|..     .+            ..+..++..+...|++++|+..|+++++..|. +..++          
T Consensus        82 ~~~g~~~~~~~~~-----~~------------~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~-~~~a~~a~~~l~~~~  143 (225)
T 2yhc_A           82 YMRGLTNMALDDS-----AL------------QGFFGVDRSDRDPQQARAAFSDFSKLVRGYPN-SQYTTDATKRLVFLK  143 (225)
T ss_dssp             HHHHHHHHHHHC-------------------------------CCHHHHHHHHHHHHHHTTCTT-CTTHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhhhh-----hh------------hhhhccchhhcCcHHHHHHHHHHHHHHHHCcC-ChhHHHHHHHHHHHH
Confidence            6666666543210     00            01112233334456666666666666665543 33222          


Q ss_pred             -------HHHHHHhhhhCCHHHHHHHHHHHHhcCCCCch----HHHHHHHHHHHhCCChhHHHHHHHHHHHc
Q 000951          950 -------TTLIHKFCKEAKFVDALKLKGTMELSGVKLDV----VSYNVLISGLCANGDVMPAFELYEEMKHK 1010 (1211)
Q Consensus       950 -------~~L~~~~~~~g~~~~A~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 1010 (1211)
                             ..++..|.+.|++++|+..|+.+...  .|+.    ..+..++.+|...|++++|.+.++.+...
T Consensus       144 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~  213 (225)
T 2yhc_A          144 DRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRD--YPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAAN  213 (225)
T ss_dssp             HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--STTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHH--CcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh
Confidence                   45677788888888888888877665  5643    35778888888888888888888877664

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=99.06  E-value=1.2e-08  Score=105.57  Aligned_cols=160  Identities=13%  Similarity=-0.019  Sum_probs=70.7

Q ss_pred             HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcC----cHHHHHHHHHHHHHCCCCCChhhHHH
Q 000951          771 KLTCHSLILGFCETGMLEVGFKFLKKMIAEGTMVDCFTFNVLMRKCCEAG----EMGKAFDLFNIMNMLGVVPDTNTQDA  846 (1211)
Q Consensus       771 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----~~~~A~~~~~~~~~~~~~~~~~~~~~  846 (1211)
                      ..++..+...|...+++++|+..|+++.+.|   +...+..|+.+|.. +    ++++|+++|+++.+.   .++..+..
T Consensus        18 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~---g~~~a~~~   90 (212)
T 3rjv_A           18 RRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAVEA---GSKSGEIV   90 (212)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHT---TCHHHHHH
T ss_pred             HHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHC---CCHHHHHH
Confidence            3344444444444455555555555444432   23344444444444 3    445555555544432   23344444


Q ss_pred             HHHHHHh----hcchhhHHHHHHHHHHcCCCCC---hhHHHHHHHHHHh----cCChhhHHHHHHHHHHcCCCCchHHHH
Q 000951          847 IIMGLKR----IAAFQESHFVLRGMAEKGLTPK---CTQYITLINGMCR----VGNFQGAFKLKDEMEALGISSSDVAES  915 (1211)
Q Consensus       847 l~~~~~~----~g~~~eA~~~~~~~~~~g~~p~---~~~~~~l~~~~~~----~g~~~eA~~~~~~~~~~~~~~~~~~~~  915 (1211)
                      |+..|..    .+++++|+.+|+++.+  ..|.   ..++..|+.+|..    .+++++|+..|+++.+.  +.+..++.
T Consensus        91 Lg~~y~~g~g~~~d~~~A~~~~~~A~~--~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~--~~~~~a~~  166 (212)
T 3rjv_A           91 LARVLVNRQAGATDVAHAITLLQDAAR--DSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL--SRTGYAEY  166 (212)
T ss_dssp             HHHHHTCGGGSSCCHHHHHHHHHHHTS--STTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT--SCTTHHHH
T ss_pred             HHHHHHcCCCCccCHHHHHHHHHHHHH--cCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc--CCCHHHHH
Confidence            4444443    4444444444444444  2221   3444444444444    44445555555554443  12233444


Q ss_pred             HHHHHHHhc-C-----CHHHHHHHHHHHHhCC
Q 000951          916 AMVRGLAHC-G-----KVEEAMLVLNRMLRMR  941 (1211)
Q Consensus       916 ~l~~~~~~~-g-----~~~eA~~~~~~~~~~~  941 (1211)
                      .++.+|... |     ++++|+..|+++.+.+
T Consensus       167 ~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g  198 (212)
T 3rjv_A          167 WAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG  198 (212)
T ss_dssp             HHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence            444444322 1     4555555555554443

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=99.04  E-value=4.4e-08  Score=104.29  Aligned_cols=79  Identities=9%  Similarity=-0.031  Sum_probs=34.9

Q ss_pred             HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-CCHhhHHHHHHHHHhcCcHHHHHHHHHHHH
Q 000951          755 CSMLLNTMKMEGLLPDKLTCHSLILGFCETGMLEVGFKFLKKMIAEGTM-VDCFTFNVLMRKCCEAGEMGKAFDLFNIMN  833 (1211)
Q Consensus       755 A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~  833 (1211)
                      |+..+++.++.+ .++..++..++.++...|++++|++.+.+.+..+.. -+...+..++.+|.+.|+.+.|.+.+++|.
T Consensus        85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~  163 (310)
T 3mv2_B           85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT  163 (310)
T ss_dssp             CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            344444444322 233333334444555555555555555554443221 123334444445555555555555555544


Q ss_pred             H
Q 000951          834 M  834 (1211)
Q Consensus       834 ~  834 (1211)
                      +
T Consensus       164 ~  164 (310)
T 3mv2_B          164 N  164 (310)
T ss_dssp             H
T ss_pred             h
Confidence            3

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=99.04  E-value=1.9e-09  Score=117.63  Aligned_cols=163  Identities=12%  Similarity=0.015  Sum_probs=113.8

Q ss_pred             CChhhHHHHHHHHHhhcchhhHHHHHHHHHHcCCCCCh-hHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCchH-HHHH
Q 000951          839 PDTNTQDAIIMGLKRIAAFQESHFVLRGMAEKGLTPKC-TQYITLINGMCRVGNFQGAFKLKDEMEALGISSSDV-AESA  916 (1211)
Q Consensus       839 ~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~-~~~~  916 (1211)
                      .+...+..++..+.+.|++++|+..|+++++  .+|+. ..+..++.++...|++++|...++++...  .|+.. ....
T Consensus       115 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~~  190 (287)
T 3qou_A          115 REEELXAQQAMQLMQESNYTDALPLLXDAWQ--LSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ--DQDTRYQGLV  190 (287)
T ss_dssp             CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--GCSHHHHHHH
T ss_pred             CchhhHHHHHHHHHhCCCHHHHHHHHHHHHH--hCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh--hcchHHHHHH
Confidence            3455666677777777777777777777777  66753 66777777777777777777777777654  23333 2233


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhCCcccCHHHHHHHHHHhhhhCCHHHHHHHHHHHHhcCCCCch---HHHHHHHHHHHh
Q 000951          917 MVRGLAHCGKVEEAMLVLNRMLRMRLVPTIATFTTLIHKFCKEAKFVDALKLKGTMELSGVKLDV---VSYNVLISGLCA  993 (1211)
Q Consensus       917 l~~~~~~~g~~~eA~~~~~~~~~~~~~p~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~p~~---~~~~~l~~~~~~  993 (1211)
                      .+..+...++.++|+..|+++++.+|. +...+..++.+|...|++++|+..|+.....  .|+.   ..+..++.+|..
T Consensus       191 ~~~~l~~~~~~~~a~~~l~~al~~~P~-~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~--~p~~~~~~a~~~l~~~~~~  267 (287)
T 3qou_A          191 AQIELLXQAADTPEIQQLQQQVAENPE-DAALATQLALQLHQVGRNEEALELLFGHLRX--DLTAADGQTRXTFQEILAA  267 (287)
T ss_dssp             HHHHHHHHHTSCHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTGGGGHHHHHHHHHHHH
T ss_pred             HHHHHHhhcccCccHHHHHHHHhcCCc-cHHHHHHHHHHHHHcccHHHHHHHHHHHHhc--ccccccchHHHHHHHHHHH
Confidence            344466667777778888888777665 7777888888888888888888877766655  5543   367777778878


Q ss_pred             CCChhHHHHHHHHHH
Q 000951          994 NGDVMPAFELYEEMK 1008 (1211)
Q Consensus       994 ~g~~~~a~~~~~~~~ 1008 (1211)
                      .|+.++|...+++..
T Consensus       268 ~g~~~~a~~~~r~al  282 (287)
T 3qou_A          268 LGTGDALASXYRRQL  282 (287)
T ss_dssp             HCTTCHHHHHHHHHH
T ss_pred             cCCCCcHHHHHHHHH
Confidence            888888777776653

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=99.04  E-value=2.1e-09  Score=118.68  Aligned_cols=129  Identities=16%  Similarity=-0.001  Sum_probs=66.1

Q ss_pred             HHHHHHHHHhhcchhhHHHHHHHHHHcC---CCCC--hhHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCC-----chHH
Q 000951          844 QDAIIMGLKRIAAFQESHFVLRGMAEKG---LTPK--CTQYITLINGMCRVGNFQGAFKLKDEMEALGISS-----SDVA  913 (1211)
Q Consensus       844 ~~~l~~~~~~~g~~~eA~~~~~~~~~~g---~~p~--~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~-----~~~~  913 (1211)
                      |..++.+|...|++++|+..|+++++.-   -+|.  ..++..++.+|.. |++++|+..|+++++.....     ...+
T Consensus        79 ~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~  157 (307)
T 2ifu_A           79 FEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAEL  157 (307)
T ss_dssp             HHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHH
Confidence            3344444444444444444444444310   0111  1345555556655 66666666666654321000     1234


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhCCccc-----CHHHHHHHHHHhhhhCCHHHHHHHHHHHH
Q 000951          914 ESAMVRGLAHCGKVEEAMLVLNRMLRMRLVP-----TIATFTTLIHKFCKEAKFVDALKLKGTME  973 (1211)
Q Consensus       914 ~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~p-----~~~~~~~L~~~~~~~g~~~~A~~~~~~~~  973 (1211)
                      +..++.+|.+.|++++|+..|+++++..+..     ....+..++.++...|++++|+..|+...
T Consensus       158 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al  222 (307)
T 2ifu_A          158 IGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY  222 (307)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence            5566666666666666666666666542211     12355666666666677777777666544

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=99.04  E-value=2.5e-09  Score=118.17  Aligned_cols=93  Identities=12%  Similarity=0.052  Sum_probs=39.5

Q ss_pred             hHHHHHHHHHhcCcHHHHHHHHHHHHHCCC---CCC--hhhHHHHHHHHHhhcchhhHHHHHHHHHHcCCCCC-------
Q 000951          808 TFNVLMRKCCEAGEMGKAFDLFNIMNMLGV---VPD--TNTQDAIIMGLKRIAAFQESHFVLRGMAEKGLTPK-------  875 (1211)
Q Consensus       808 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~--~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~g~~p~-------  875 (1211)
                      +++.++.+|...|++++|++.|+++++...   .+.  ..++..++.+|.. |++++|+..|+++++  +.|.       
T Consensus        78 ~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~--~~~~~~~~~~~  154 (307)
T 2ifu_A           78 AFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAA--VFENEERLRQA  154 (307)
T ss_dssp             HHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHH--HHHHTTCHHHH
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHH--HHHhCCChhHH
Confidence            344444444444455555554444432100   000  2234444444444 445555555544443  1110       


Q ss_pred             hhHHHHHHHHHHhcCChhhHHHHHHHHH
Q 000951          876 CTQYITLINGMCRVGNFQGAFKLKDEME  903 (1211)
Q Consensus       876 ~~~~~~l~~~~~~~g~~~eA~~~~~~~~  903 (1211)
                      ..++..++.++...|++++|+..|++++
T Consensus       155 ~~~~~~lg~~~~~~g~~~~A~~~~~~al  182 (307)
T 2ifu_A          155 AELIGKASRLLVRQQKFDEAAASLQKEK  182 (307)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            1334444444444555555555554444

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=99.04  E-value=1e-09  Score=109.88  Aligned_cols=159  Identities=11%  Similarity=0.026  Sum_probs=99.7

Q ss_pred             hHHHHHHHHHhhcchhhHHHHHHHHHHcCCCCCh-hHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCchHHHHHHHHH-
Q 000951          843 TQDAIIMGLKRIAAFQESHFVLRGMAEKGLTPKC-TQYITLINGMCRVGNFQGAFKLKDEMEALGISSSDVAESAMVRG-  920 (1211)
Q Consensus       843 ~~~~l~~~~~~~g~~~eA~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~-  920 (1211)
                      .+..++..+.+.|++++|+..|+++++  ..|+. ..+..++.++...|++++|+..|+++.+..  |+...+..++.. 
T Consensus         8 ~~~~~a~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~   83 (176)
T 2r5s_A            8 QLLKQVSELLQQGEHAQALNVIQTLSD--ELQSRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLE   83 (176)
T ss_dssp             THHHHHHHHHHTTCHHHHHHHHHTSCH--HHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHH--HCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHH
Confidence            345556666666666777766666665  55643 566667777777777777777777665442  233333322222 


Q ss_pred             HHhcCCHHHHHHHHHHHHhCCcccCHHHHHHHHHHhhhhCCHHHHHHHHHHHHhcCCCCc---hHHHHHHHHHHHhCCCh
Q 000951          921 LAHCGKVEEAMLVLNRMLRMRLVPTIATFTTLIHKFCKEAKFVDALKLKGTMELSGVKLD---VVSYNVLISGLCANGDV  997 (1211)
Q Consensus       921 ~~~~g~~~eA~~~~~~~~~~~~~p~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~g~~  997 (1211)
                      +...+...+|+..|+++++.+|. ++.++..++.++...|++++|+..|+.....  .|+   ...+..++.+|...|+.
T Consensus        84 ~~~~~~~~~a~~~~~~al~~~P~-~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~a~~~l~~~~~~~g~~  160 (176)
T 2r5s_A           84 LHQQAAESPELKRLEQELAANPD-NFELACELAVQYNQVGRDEEALELLWNILKV--NLGAQDGEVKKTFMDILSALGQG  160 (176)
T ss_dssp             HHHHHTSCHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CTTTTTTHHHHHHHHHHHHHCSS
T ss_pred             HHhhcccchHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcccHHHHHHHHHHHHHh--CcccChHHHHHHHHHHHHHhCCC
Confidence            12223334567777777776655 6777777777777777777777777765544  553   33667777777777777


Q ss_pred             hHHHHHHHHHH
Q 000951          998 MPAFELYEEMK 1008 (1211)
Q Consensus       998 ~~a~~~~~~~~ 1008 (1211)
                      ++|...+++..
T Consensus       161 ~~A~~~y~~al  171 (176)
T 2r5s_A          161 NAIASKYRRQL  171 (176)
T ss_dssp             CHHHHHHHHHH
T ss_pred             CcHHHHHHHHH
Confidence            77777776654

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=99.03  E-value=1.1e-08  Score=105.89  Aligned_cols=176  Identities=13%  Similarity=0.042  Sum_probs=109.4

Q ss_pred             HHHHHHHHHHHCCCCCChhhHHHHHHHHHhhcchhhHHHHHHHHHHcCCCCChhHHHHHHHHHHhcC----ChhhHHHHH
Q 000951          824 KAFDLFNIMNMLGVVPDTNTQDAIIMGLKRIAAFQESHFVLRGMAEKGLTPKCTQYITLINGMCRVG----NFQGAFKLK  899 (1211)
Q Consensus       824 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g----~~~eA~~~~  899 (1211)
                      +|++.|++..+.   .++..+..++..|...+++++|+.+|+++.+.|   +..++..|+..|.. +    ++++|+++|
T Consensus         4 eA~~~~~~aa~~---g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~   76 (212)
T 3rjv_A            4 EPGSQYQQQAEA---GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLA   76 (212)
T ss_dssp             CTTHHHHHHHHT---TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHH
T ss_pred             hHHHHHHHHHHC---CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHH
Confidence            355555555553   355566666666666666666666666666532   34556666666665 4    667777777


Q ss_pred             HHHHHcCCCCchHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCcc-cCHHHHHHHHHHhhh----hCCHHHHHHHHH
Q 000951          900 DEMEALGISSSDVAESAMVRGLAH----CGKVEEAMLVLNRMLRMRLV-PTIATFTTLIHKFCK----EAKFVDALKLKG  970 (1211)
Q Consensus       900 ~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~eA~~~~~~~~~~~~~-p~~~~~~~L~~~~~~----~g~~~~A~~~~~  970 (1211)
                      +++.+.+   +..++..++.+|..    .+++++|++.|+++.+.++. .++.++..|+.+|..    .+++++|+..|+
T Consensus        77 ~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~  153 (212)
T 3rjv_A           77 EKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFK  153 (212)
T ss_dssp             HHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHH
T ss_pred             HHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence            7776543   45566666666665    66777777777777766532 025667777777766    667777777776


Q ss_pred             HHHhcCCCCchHHHHHHHHHHHhC-C-----ChhHHHHHHHHHHHcC
Q 000951          971 TMELSGVKLDVVSYNVLISGLCAN-G-----DVMPAFELYEEMKHKG 1011 (1211)
Q Consensus       971 ~~~~~~~~p~~~~~~~l~~~~~~~-g-----~~~~a~~~~~~~~~~g 1011 (1211)
                      ...+.  .++..+++.|+.+|... |     ++++|.+.+++..+.|
T Consensus       154 ~A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g  198 (212)
T 3rjv_A          154 GSSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG  198 (212)
T ss_dssp             HHHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred             HHHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence            65544  23445666777766543 2     6777777777766644

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=99.01  E-value=2.9e-09  Score=99.31  Aligned_cols=113  Identities=10%  Similarity=0.037  Sum_probs=67.8

Q ss_pred             CCCCh-hHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCcccCHHHHH
Q 000951          872 LTPKC-TQYITLINGMCRVGNFQGAFKLKDEMEALGISSSDVAESAMVRGLAHCGKVEEAMLVLNRMLRMRLVPTIATFT  950 (1211)
Q Consensus       872 ~~p~~-~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~p~~~~~~  950 (1211)
                      ++|+. ..+..++..+.+.|++++|++.|+++++.. |.+..+|..++.+|.+.|++++|+..|+++++.+|. +..+|.
T Consensus         8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~   85 (126)
T 4gco_A            8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSK-FIKGYI   85 (126)
T ss_dssp             CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHH
T ss_pred             HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhh-hhHHHH
Confidence            45543 555566666666666666666666666552 445556666666666666666666666666666544 566666


Q ss_pred             HHHHHhhhhCCHHHHHHHHHHHHhcCCCCchH-HHHHHH
Q 000951          951 TLIHKFCKEAKFVDALKLKGTMELSGVKLDVV-SYNVLI  988 (1211)
Q Consensus       951 ~L~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~l~  988 (1211)
                      .+|.+|...|++++|+..|+.....  .|+.. .+..+.
T Consensus        86 ~lg~~~~~~~~~~~A~~~~~~al~l--~P~~~~a~~~l~  122 (126)
T 4gco_A           86 RKAACLVAMREWSKAQRAYEDALQV--DPSNEEAREGVR  122 (126)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHH--CcCCHHHHHHHH
Confidence            6666666666666666666655544  55433 444443

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.01  E-value=7e-09  Score=98.04  Aligned_cols=126  Identities=14%  Similarity=0.180  Sum_probs=61.5

Q ss_pred             HHHHHHHHHhhcchhhHHHHHHHHHHcCCCCC-hhHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCchHHHHHHHHHHH
Q 000951          844 QDAIIMGLKRIAAFQESHFVLRGMAEKGLTPK-CTQYITLINGMCRVGNFQGAFKLKDEMEALGISSSDVAESAMVRGLA  922 (1211)
Q Consensus       844 ~~~l~~~~~~~g~~~eA~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~  922 (1211)
                      |..++..+...|++++|+.+|+++++  ..|+ ...+..++..+...|++++|...++++.+.+ +.+...+..++.++.
T Consensus         4 ~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~   80 (136)
T 2fo7_A            4 WYNLGNAYYKQGDYDEAIEYYQKALE--LDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYY   80 (136)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCcHHHHHHHHHHHHH--cCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHH
Confidence            34444444444555555555554444  2232 2344444555555555555555555554432 333444445555555


Q ss_pred             hcCCHHHHHHHHHHHHhCCcccCHHHHHHHHHHhhhhCCHHHHHHHHHHHH
Q 000951          923 HCGKVEEAMLVLNRMLRMRLVPTIATFTTLIHKFCKEAKFVDALKLKGTME  973 (1211)
Q Consensus       923 ~~g~~~eA~~~~~~~~~~~~~p~~~~~~~L~~~~~~~g~~~~A~~~~~~~~  973 (1211)
                      ..|++++|++.++++++..+. +..++..++.++...|++++|...++.+.
T Consensus        81 ~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~  130 (136)
T 2fo7_A           81 KQGDYDEAIEYYQKALELDPR-SAEAWYNLGNAYYKQGDYDEAIEYYQKAL  130 (136)
T ss_dssp             TTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred             HhcCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHHccHHHHHHHHHHHH
Confidence            555555555555555554332 44455555555555555555555554443

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=99.00  E-value=3e-09  Score=99.26  Aligned_cols=115  Identities=10%  Similarity=0.013  Sum_probs=95.4

Q ss_pred             CCC-hhhHHHHHHHHHhhcchhhHHHHHHHHHHcCCCCC-hhHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCchHHHH
Q 000951          838 VPD-TNTQDAIIMGLKRIAAFQESHFVLRGMAEKGLTPK-CTQYITLINGMCRVGNFQGAFKLKDEMEALGISSSDVAES  915 (1211)
Q Consensus       838 ~~~-~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~  915 (1211)
                      .|+ ...+...+..|.+.|++++|+..|+++++  +.|+ ..+|..++.++...|++++|+..|+++++.+ +.+..+|.
T Consensus         9 nP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~   85 (126)
T 4gco_A            9 NPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVK--RDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYI   85 (126)
T ss_dssp             CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHH
Confidence            344 45677788888888888888888888888  7775 4788888999999999999999999998774 66778889


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhCCcccCHHHHHHHHHHh
Q 000951          916 AMVRGLAHCGKVEEAMLVLNRMLRMRLVPTIATFTTLIHKF  956 (1211)
Q Consensus       916 ~l~~~~~~~g~~~eA~~~~~~~~~~~~~p~~~~~~~L~~~~  956 (1211)
                      .++.++...|++++|++.|+++++.+|. +..++..|+.++
T Consensus        86 ~lg~~~~~~~~~~~A~~~~~~al~l~P~-~~~a~~~l~~~l  125 (126)
T 4gco_A           86 RKAACLVAMREWSKAQRAYEDALQVDPS-NEEAREGVRNCL  125 (126)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHC
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHCcC-CHHHHHHHHHhc
Confidence            9999999999999999999999998876 888888777654

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=99.00  E-value=1.8e-08  Score=107.19  Aligned_cols=178  Identities=7%  Similarity=-0.064  Sum_probs=87.8

Q ss_pred             HHHHHHHHHHCCCCCChhhHHHHHHHHHhhcchhhHHHHHHHHHHcCCCCC-hhHHHHHHHHHHhcCChhhHHHHHHHHH
Q 000951          825 AFDLFNIMNMLGVVPDTNTQDAIIMGLKRIAAFQESHFVLRGMAEKGLTPK-CTQYITLINGMCRVGNFQGAFKLKDEME  903 (1211)
Q Consensus       825 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~eA~~~~~~~~  903 (1211)
                      |+..|++..+.+ .++..++..++.++...|++++|+.++.+.+..+-.++ ...+..++.++.+.|+.+.|.+.++++.
T Consensus        85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~  163 (310)
T 3mv2_B           85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT  163 (310)
T ss_dssp             CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            455555554432 23344444555566666666666666666554222122 2555555666666666666666666665


Q ss_pred             HcCCCC-----chHHHHHHHHH--HHhcC--CHHHHHHHHHHHHhCCcccCHHHHHHHHHHhhhhCCHHHHHHHHHHHHh
Q 000951          904 ALGISS-----SDVAESAMVRG--LAHCG--KVEEAMLVLNRMLRMRLVPTIATFTTLIHKFCKEAKFVDALKLKGTMEL  974 (1211)
Q Consensus       904 ~~~~~~-----~~~~~~~l~~~--~~~~g--~~~eA~~~~~~~~~~~~~p~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~  974 (1211)
                      +.  .|     +..+...++.+  ....|  ++++|..+|+++.+..+  +...-..|..++.+.|++++|+..++.+.+
T Consensus       164 ~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p--~~~~~~lLln~~~~~g~~~eAe~~L~~l~~  239 (310)
T 3mv2_B          164 NA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFP--TWKTQLGLLNLHLQQRNIAEAQGIVELLLS  239 (310)
T ss_dssp             HH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSC--SHHHHHHHHHHHHHHTCHHHHHHHHHHHHS
T ss_pred             hc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCC--CcccHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            43  33     23333333322  22223  56666666666655432  211111222256666666666666654332


Q ss_pred             cC--------CCCchH-HHHHHHHHHHhCCChhHHHHHHHHHHH
Q 000951          975 SG--------VKLDVV-SYNVLISGLCANGDVMPAFELYEEMKH 1009 (1211)
Q Consensus       975 ~~--------~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~ 1009 (1211)
                      .-        ..|+.. +..+++......|+  +|.+++.++++
T Consensus       240 ~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~  281 (310)
T 3mv2_B          240 DYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVK  281 (310)
T ss_dssp             HHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHH
T ss_pred             hcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHH
Confidence            20        024333 44455444444454  66666666654

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=98.99  E-value=5.6e-09  Score=113.81  Aligned_cols=162  Identities=12%  Similarity=-0.024  Sum_probs=98.9

Q ss_pred             HhhHHHHHHHHHhcCcHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhcchhhHHHHHHHHHHcCCCCCh-hHHHHHHH
Q 000951          806 CFTFNVLMRKCCEAGEMGKAFDLFNIMNMLGVVPDTNTQDAIIMGLKRIAAFQESHFVLRGMAEKGLTPKC-TQYITLIN  884 (1211)
Q Consensus       806 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~g~~p~~-~~~~~l~~  884 (1211)
                      ...+..++..+...|++++|++.|+++++.. +.+...+..++.+|.+.|++++|+..+++++.  ..|+. ........
T Consensus       117 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~--~~p~~~~~~~~~~~  193 (287)
T 3qou_A          117 EELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPL--QDQDTRYQGLVAQI  193 (287)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCG--GGCSHHHHHHHHHH
T ss_pred             hhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCch--hhcchHHHHHHHHH
Confidence            3444555555666666666666666665532 22355566666666666666666666666655  44544 22223333


Q ss_pred             HHHhcCChhhHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCccc-CHHHHHHHHHHhhhhCCHH
Q 000951          885 GMCRVGNFQGAFKLKDEMEALGISSSDVAESAMVRGLAHCGKVEEAMLVLNRMLRMRLVP-TIATFTTLIHKFCKEAKFV  963 (1211)
Q Consensus       885 ~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~p-~~~~~~~L~~~~~~~g~~~  963 (1211)
                      .+...++.++|+..|+++++.. |.+..++..++.+|...|++++|+..|+++++.+|.. +..++..|+.++...|+.+
T Consensus       194 ~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~  272 (287)
T 3qou_A          194 ELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGD  272 (287)
T ss_dssp             HHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTC
T ss_pred             HHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCC
Confidence            4555666666677777666552 5556666777777777777777777777777765442 2566777777777777777


Q ss_pred             HHHHHHHH
Q 000951          964 DALKLKGT  971 (1211)
Q Consensus       964 ~A~~~~~~  971 (1211)
                      +|...|+.
T Consensus       273 ~a~~~~r~  280 (287)
T 3qou_A          273 ALASXYRR  280 (287)
T ss_dssp             HHHHHHHH
T ss_pred             cHHHHHHH
Confidence            77766654

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=98.99  E-value=2.2e-09  Score=107.46  Aligned_cols=160  Identities=11%  Similarity=0.014  Sum_probs=96.1

Q ss_pred             HHHHHHHHHhcCcHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhcchhhHHHHHHHHHHcCCCCChhHHHHHHHH-HH
Q 000951          809 FNVLMRKCCEAGEMGKAFDLFNIMNMLGVVPDTNTQDAIIMGLKRIAAFQESHFVLRGMAEKGLTPKCTQYITLING-MC  887 (1211)
Q Consensus       809 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~g~~p~~~~~~~l~~~-~~  887 (1211)
                      ...++..+...|++++|+..|+++++.. +.+...|..++.+|...|++++|+..|+++++  ..|+...+..++.. +.
T Consensus         9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~--~~p~~~~~~~~~~~~~~   85 (176)
T 2r5s_A            9 LLKQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPL--EYQDNSYKSLIAKLELH   85 (176)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCG--GGCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhh--ccCChHHHHHHHHHHHH
Confidence            3444555556666666666666554321 22355566666666666666666666666555  33422222222211 11


Q ss_pred             hcCChhhHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCccc-CHHHHHHHHHHhhhhCCHHHHH
Q 000951          888 RVGNFQGAFKLKDEMEALGISSSDVAESAMVRGLAHCGKVEEAMLVLNRMLRMRLVP-TIATFTTLIHKFCKEAKFVDAL  966 (1211)
Q Consensus       888 ~~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~p-~~~~~~~L~~~~~~~g~~~~A~  966 (1211)
                      ..+...+|+..++++++.. |.+..++..++.++...|++++|+..|+++++.+|.+ +..++..++.++...|+.++|.
T Consensus        86 ~~~~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~  164 (176)
T 2r5s_A           86 QQAAESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIA  164 (176)
T ss_dssp             HHHTSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHH
T ss_pred             hhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHH
Confidence            2223344677777777652 4556777777777888888888888888887776553 4567777888888888888887


Q ss_pred             HHHHHH
Q 000951          967 KLKGTM  972 (1211)
Q Consensus       967 ~~~~~~  972 (1211)
                      ..|+..
T Consensus       165 ~~y~~a  170 (176)
T 2r5s_A          165 SKYRRQ  170 (176)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            776643

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=98.96  E-value=1.4e-09  Score=104.68  Aligned_cols=106  Identities=5%  Similarity=-0.149  Sum_probs=66.7

Q ss_pred             CCCCh-hHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCcccCHHHHH
Q 000951          872 LTPKC-TQYITLINGMCRVGNFQGAFKLKDEMEALGISSSDVAESAMVRGLAHCGKVEEAMLVLNRMLRMRLVPTIATFT  950 (1211)
Q Consensus       872 ~~p~~-~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~p~~~~~~  950 (1211)
                      ++|+. ..+..++..+...|++++|+..|+++++.. |.+..+|..++.+|...|++++|+..|+++++.+|. ++.+|.
T Consensus        31 l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~-~~~~~~  108 (151)
T 3gyz_A           31 IPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKN-DYTPVF  108 (151)
T ss_dssp             SCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSS-CCHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCC-CcHHHH
Confidence            45543 556666666666666666666666666552 455666666666666666666666666666666554 566666


Q ss_pred             HHHHHhhhhCCHHHHHHHHHHHHhcCCCCch
Q 000951          951 TLIHKFCKEAKFVDALKLKGTMELSGVKLDV  981 (1211)
Q Consensus       951 ~L~~~~~~~g~~~~A~~~~~~~~~~~~~p~~  981 (1211)
                      .+|.+|...|++++|+..|+.....  .|+.
T Consensus       109 ~lg~~~~~lg~~~eA~~~~~~al~l--~~~~  137 (151)
T 3gyz_A          109 HTGQCQLRLKAPLKAKECFELVIQH--SNDE  137 (151)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHH--CCCH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHh--CCCH
Confidence            6666666666666666666655544  4544

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=98.96  E-value=5.6e-09  Score=100.40  Aligned_cols=125  Identities=10%  Similarity=0.015  Sum_probs=103.4

Q ss_pred             HHHHHHHHHhcCChhhHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCcccCHHHHHHHHHHhhh
Q 000951          879 YITLINGMCRVGNFQGAFKLKDEMEALGISSSDVAESAMVRGLAHCGKVEEAMLVLNRMLRMRLVPTIATFTTLIHKFCK  958 (1211)
Q Consensus       879 ~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~p~~~~~~~L~~~~~~  958 (1211)
                      ...+.+.+...+.+.+++++        .|.+..++..++..+.+.|++++|+..|+++++.+|. ++..|..+|.+|..
T Consensus        12 ~~~l~~~~~~~~~l~~al~l--------~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~-~~~~~~~lg~~~~~   82 (151)
T 3gyz_A           12 STAVIDAINSGATLKDINAI--------PDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFY-NVDYIMGLAAIYQI   82 (151)
T ss_dssp             HHHHHHHHHTSCCTGGGCCS--------CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCCHHHHhCC--------CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHH
Confidence            44455555555555555443        2445668899999999999999999999999999876 99999999999999


Q ss_pred             hCCHHHHHHHHHHHHhcCCCCc-hHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCccCh
Q 000951          959 EAKFVDALKLKGTMELSGVKLD-VVSYNVLISGLCANGDVMPAFELYEEMKHKGLCPNS 1016 (1211)
Q Consensus       959 ~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~p~~ 1016 (1211)
                      .|++++|+..|+.....  .|+ +..|+.++.+|...|++++|++.+++..+.  .|++
T Consensus        83 ~g~~~~Ai~~~~~al~l--~P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l--~~~~  137 (151)
T 3gyz_A           83 KEQFQQAADLYAVAFAL--GKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQH--SNDE  137 (151)
T ss_dssp             TTCHHHHHHHHHHHHHH--SSSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCH
T ss_pred             HccHHHHHHHHHHHHhh--CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCH
Confidence            99999999999987776  885 458999999999999999999999999873  4554

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=98.95  E-value=6.4e-09  Score=126.15  Aligned_cols=152  Identities=8%  Similarity=-0.048  Sum_probs=61.1

Q ss_pred             CChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhcchhhHHHHH
Q 000951          785 GMLEVGFKFLKKMIAEGTMVDCFTFNVLMRKCCEAGEMGKAFDLFNIMNMLGVVPDTNTQDAIIMGLKRIAAFQESHFVL  864 (1211)
Q Consensus       785 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~  864 (1211)
                      |++++|++.++++++.. +.+...+..++.+|...|++++|++.|+++++.. +.+...|..++..|...|++++|+..|
T Consensus         3 g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~   80 (568)
T 2vsy_A            3 ADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVLL   80 (568)
T ss_dssp             -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence            44455555555554421 1123444445555555555555555555554422 122444444444444444555555544


Q ss_pred             HHHHHcCCCCC-hhHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCchHHHHHHHHHHHhc---CCHHHHHHHHHHHHhC
Q 000951          865 RGMAEKGLTPK-CTQYITLINGMCRVGNFQGAFKLKDEMEALGISSSDVAESAMVRGLAHC---GKVEEAMLVLNRMLRM  940 (1211)
Q Consensus       865 ~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~eA~~~~~~~~~~  940 (1211)
                      +++++  ..|+ ...+..++.++...|++++|.+.|+++.+.. +.+..++..++.++...   |++++|.+.|+++++.
T Consensus        81 ~~al~--~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~  157 (568)
T 2vsy_A           81 QQASD--AAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ  157 (568)
T ss_dssp             HHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred             HHHHh--cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence            44444  3343 2444444444444444444444444444431 23334444444444444   4444444444444444


Q ss_pred             C
Q 000951          941 R  941 (1211)
Q Consensus       941 ~  941 (1211)
                      +
T Consensus       158 ~  158 (568)
T 2vsy_A          158 G  158 (568)
T ss_dssp             T
T ss_pred             C
Confidence            3

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=98.95  E-value=2.3e-07  Score=100.60  Aligned_cols=194  Identities=7%  Similarity=-0.058  Sum_probs=139.3

Q ss_pred             HHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhcc--hhhHHHHHHHHHHcCCCCC-hhHHHHHHHHHHhcCC-hhhHHH
Q 000951          822 MGKAFDLFNIMNMLGVVPDTNTQDAIIMGLKRIAA--FQESHFVLRGMAEKGLTPK-CTQYITLINGMCRVGN-FQGAFK  897 (1211)
Q Consensus       822 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~eA~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~-~~eA~~  897 (1211)
                      +++++++++.++... +.+..+|+.-..++...|+  +++++..++++++  .+|. ..+|.....+....|. ++++++
T Consensus        90 l~~EL~~~~~~L~~~-PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~--~dprNy~AW~~R~~vl~~l~~~~~eel~  166 (331)
T 3dss_A           90 VKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLE--ADERNFHCWDYRRFVAAQAAVAPAEELA  166 (331)
T ss_dssp             HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred             HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHhCcCHHHHHH
Confidence            567777777777643 3467777777777777774  7788888888887  7774 4677777777777777 588888


Q ss_pred             HHHHHHHcCCCCchHHHHHHHHHHHhc--------------CCHHHHHHHHHHHHhCCcccCHHHHHHHHHHhhhh----
Q 000951          898 LKDEMEALGISSSDVAESAMVRGLAHC--------------GKVEEAMLVLNRMLRMRLVPTIATFTTLIHKFCKE----  959 (1211)
Q Consensus       898 ~~~~~~~~~~~~~~~~~~~l~~~~~~~--------------g~~~eA~~~~~~~~~~~~~p~~~~~~~L~~~~~~~----  959 (1211)
                      .++++++.+ +.+..+|+..+.++.+.              +.++++++.+++++..+|. |..+|+.+.+.+.+.    
T Consensus       167 ~~~~~I~~~-p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~-d~SaW~Y~r~ll~~~~~~~  244 (331)
T 3dss_A          167 FTDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPN-DQSAWFYHRWLLGAGSGRC  244 (331)
T ss_dssp             HHHHHHHHC-SCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHSSSCGG
T ss_pred             HHHHHHHHC-CCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccCcc
Confidence            888888763 66777787777766655              4588999999999998877 999998888777666    


Q ss_pred             -------CCHHHHHHHHHHHHhcCCCCchH-HHHHHHH---HHHhCCChhHHHHHHHHHHHcCCccCh-hhHHHHHH
Q 000951          960 -------AKFVDALKLKGTMELSGVKLDVV-SYNVLIS---GLCANGDVMPAFELYEEMKHKGLCPNS-TTYSVLID 1024 (1211)
Q Consensus       960 -------g~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~---~~~~~g~~~~a~~~~~~~~~~g~~p~~-~~~~~l~~ 1024 (1211)
                             +.++++++.++.+.+.  .||.. .+..++.   .....|..+++...+.++++  +.|.. .-|..+.+
T Consensus       245 ~~~~~~~~~l~~el~~~~elle~--~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~--~Dp~r~~~y~d~~~  317 (331)
T 3dss_A          245 ELSVEKSTVLQSELESCKELQEL--EPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKA--VDPMRAAYLDDLRS  317 (331)
T ss_dssp             GCCHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHH--HCGGGHHHHHHHHH
T ss_pred             ccchHHHHHHHHHHHHHHHHHhh--CcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHH--hCcchhhHHHHHHH
Confidence                   4688999988887776  88763 3322222   22245777788888888865  66666 44544443

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=98.92  E-value=3e-08  Score=93.64  Aligned_cols=128  Identities=16%  Similarity=0.191  Sum_probs=113.4

Q ss_pred             HHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCcccCHHHHHHHHHHhh
Q 000951          878 QYITLINGMCRVGNFQGAFKLKDEMEALGISSSDVAESAMVRGLAHCGKVEEAMLVLNRMLRMRLVPTIATFTTLIHKFC  957 (1211)
Q Consensus       878 ~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~p~~~~~~~L~~~~~  957 (1211)
                      .+..++..+...|++++|...++++.+.. +.+...+..++..+...|++++|...++++++.++. +..+|..++.++.
T Consensus         3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~   80 (136)
T 2fo7_A            3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR-SAEAWYNLGNAYY   80 (136)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCC-chHHHHHHHHHHH
Confidence            57788999999999999999999998764 556778889999999999999999999999998755 7889999999999


Q ss_pred             hhCCHHHHHHHHHHHHhcCCCCc-hHHHHHHHHHHHhCCChhHHHHHHHHHHH
Q 000951          958 KEAKFVDALKLKGTMELSGVKLD-VVSYNVLISGLCANGDVMPAFELYEEMKH 1009 (1211)
Q Consensus       958 ~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 1009 (1211)
                      ..|++++|+..++.+...  .|+ ...+..++.+|...|++++|.+.++++.+
T Consensus        81 ~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~  131 (136)
T 2fo7_A           81 KQGDYDEAIEYYQKALEL--DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE  131 (136)
T ss_dssp             TTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred             HhcCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence            999999999999887765  564 45888899999999999999999998866

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=98.91  E-value=1e-08  Score=124.30  Aligned_cols=163  Identities=9%  Similarity=-0.058  Sum_probs=122.6

Q ss_pred             cCcHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhcchhhHHHHHHHHHHcCCCCC-hhHHHHHHHHHHhcCChhhHHH
Q 000951          819 AGEMGKAFDLFNIMNMLGVVPDTNTQDAIIMGLKRIAAFQESHFVLRGMAEKGLTPK-CTQYITLINGMCRVGNFQGAFK  897 (1211)
Q Consensus       819 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~eA~~  897 (1211)
                      .|++++|++.|+++.+.. +.+...|..++..|...|++++|+..|+++++  ..|+ ...+..++.++...|++++|.+
T Consensus         2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~   78 (568)
T 2vsy_A            2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLA--LHPGHPEAVARLGRVRWTQQRHAEAAV   78 (568)
T ss_dssp             --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHT--TSTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence            478899999999988643 33578899999999999999999999999998  7786 4788999999999999999999


Q ss_pred             HHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCcccCHHHHHHHHHHhhhh---CCHHHHHHHHHHHHh
Q 000951          898 LKDEMEALGISSSDVAESAMVRGLAHCGKVEEAMLVLNRMLRMRLVPTIATFTTLIHKFCKE---AKFVDALKLKGTMEL  974 (1211)
Q Consensus       898 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~p~~~~~~~L~~~~~~~---g~~~~A~~~~~~~~~  974 (1211)
                      .|+++++.. +.+..++..++.+|...|++++|++.|+++++.++. +..++..++.++...   |++++|.+.++...+
T Consensus        79 ~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~  156 (568)
T 2vsy_A           79 LLQQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPE-EPYITAQLLNWRRRLCDWRALDVLSAQVRAAVA  156 (568)
T ss_dssp             HHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHH
T ss_pred             HHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhhccccHHHHHHHHHHHHh
Confidence            999998773 566788899999999999999999999999998765 788999999999999   999999999887766


Q ss_pred             cCCCCchH-HHHHHH
Q 000951          975 SGVKLDVV-SYNVLI  988 (1211)
Q Consensus       975 ~~~~p~~~-~~~~l~  988 (1211)
                      .  .|+.. .+..++
T Consensus       157 ~--~p~~~~~~~~l~  169 (568)
T 2vsy_A          157 Q--GVGAVEPFAFLS  169 (568)
T ss_dssp             H--TCCCSCHHHHTT
T ss_pred             c--CCcccChHHHhC
Confidence            5  66544 444443

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=98.87  E-value=2.8e-08  Score=104.37  Aligned_cols=189  Identities=7%  Similarity=-0.112  Sum_probs=121.5

Q ss_pred             hcCChHHHHHHHHHHHHcCCCCC-HhhHHHH-------HHHHHhcCcHHHHHHHHHHHHHCCCCCC--------------
Q 000951          783 ETGMLEVGFKFLKKMIAEGTMVD-CFTFNVL-------MRKCCEAGEMGKAFDLFNIMNMLGVVPD--------------  840 (1211)
Q Consensus       783 ~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l-------~~~~~~~g~~~~A~~~~~~~~~~~~~~~--------------  840 (1211)
                      ..+++..|.+.|.++.+.  .|+ ...|..+       ...+...++..+++..+++..+  +.|+              
T Consensus        18 ~~~d~~~A~~~F~~a~~~--dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~   93 (282)
T 4f3v_A           18 LPMSEARSLDLFTEITNY--DESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGD   93 (282)
T ss_dssp             TTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCC
T ss_pred             cCCCHHHHHHHHHHHHHh--ChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCcccc
Confidence            456666666666666663  333 4555555       4455555555555555555443  2222              


Q ss_pred             --------hhhHHHHHHHHHhhcchhhHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCc--
Q 000951          841 --------TNTQDAIIMGLKRIAAFQESHFVLRGMAEKGLTPKCTQYITLINGMCRVGNFQGAFKLKDEMEALGISSS--  910 (1211)
Q Consensus       841 --------~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~--  910 (1211)
                              ...+..++..+...|++++|..+|..+..  ..|+......++..+.+.|+|++|+..|+.+.+.. .|.  
T Consensus        94 ~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~--~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~  170 (282)
T 4f3v_A           94 ITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPV--AGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLA  170 (282)
T ss_dssp             CEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCC--TTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHH
T ss_pred             cccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccH
Confidence                    11233455667777788888877777765  45654466677777778888888888887554331 121  


Q ss_pred             hHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCccc--CHHHHHHHHHHhhhhCCHHHHHHHHHHHHhcCCCCc
Q 000951          911 DVAESAMVRGLAHCGKVEEAMLVLNRMLRMRLVP--TIATFTTLIHKFCKEAKFVDALKLKGTMELSGVKLD  980 (1211)
Q Consensus       911 ~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~p--~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~p~  980 (1211)
                      ..++..++.++...|++++|+..|+++..-+..|  ...++..++.++.+.|+.++|..+|+.+.+.  .|+
T Consensus       171 ~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~--~P~  240 (282)
T 4f3v_A          171 GAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT--HPE  240 (282)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--SCC
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCc
Confidence            3367777888888888888888888887543224  3346777888888888888888888877766  676

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=98.86  E-value=4.5e-07  Score=98.59  Aligned_cols=231  Identities=8%  Similarity=0.017  Sum_probs=151.3

Q ss_pred             cCChHHHHHHHHHHHHcCCCC-CHhhHHHHHHHHHhcC-cHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhh-c-chhh
Q 000951          784 TGMLEVGFKFLKKMIAEGTMV-DCFTFNVLMRKCCEAG-EMGKAFDLFNIMNMLGVVPDTNTQDAIIMGLKRI-A-AFQE  859 (1211)
Q Consensus       784 ~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g-~~~e  859 (1211)
                      .+..++|++++++++..  .| +..+|+....++...| .++++++.++.++... +.+..+|+.-..++.+. + ++++
T Consensus        67 ~e~se~AL~lt~~~L~~--nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~~~~~~  143 (349)
T 3q7a_A           67 EEKSERALELTEIIVRM--NPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISPQDPVS  143 (349)
T ss_dssp             TCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCCSCCHH
T ss_pred             CCCCHHHHHHHHHHHHh--CchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcCCChHH
Confidence            34445677777777664  23 3455666666666666 4777777777776643 33566676666666665 5 6677


Q ss_pred             HHHHHHHHHHcCCCCC-hhHHHHHHHHHHhcCChh--------hHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCC----
Q 000951          860 SHFVLRGMAEKGLTPK-CTQYITLINGMCRVGNFQ--------GAFKLKDEMEALGISSSDVAESAMVRGLAHCGK----  926 (1211)
Q Consensus       860 A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~--------eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----  926 (1211)
                      ++..++++++  .+|. ..+|.....+..+.|.++        ++++.++++++.. +.+..+|+..+.++.+.++    
T Consensus       144 EL~~~~k~L~--~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~~l~~~~~~  220 (349)
T 3q7a_A          144 EIEYIHGSLL--PDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRVSRPGAETS  220 (349)
T ss_dssp             HHHHHHHHTS--SCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHTTSTTCCCC
T ss_pred             HHHHHHHHHH--hCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccccc
Confidence            7777777776  6664 366666666666666665        7888888887763 6677788888888877776    


Q ss_pred             ---HHHHHHHHHHHHhCCcccCHHHHHHHHHHhhhhCCH--------------------HHHHHHHHHHHhcC----CC-
Q 000951          927 ---VEEAMLVLNRMLRMRLVPTIATFTTLIHKFCKEAKF--------------------VDALKLKGTMELSG----VK-  978 (1211)
Q Consensus       927 ---~~eA~~~~~~~~~~~~~p~~~~~~~L~~~~~~~g~~--------------------~~A~~~~~~~~~~~----~~-  978 (1211)
                         ++++++.+++++..+|. |..+|+.+...+.+.|+-                    .+.......+....    .. 
T Consensus       221 ~~~~~eELe~~~~aI~~~P~-n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (349)
T 3q7a_A          221 SRSLQDELIYILKSIHLIPH-NVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPL  299 (349)
T ss_dssp             HHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCS
T ss_pred             hHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCC
Confidence               78899999999998877 889999988888877764                    12222211111110    01 


Q ss_pred             CchHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCccCh-hhHHHH
Q 000951          979 LDVVSYNVLISGLCANGDVMPAFELYEEMKHKGLCPNS-TTYSVL 1022 (1211)
Q Consensus       979 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~p~~-~~~~~l 1022 (1211)
                      +....+..|+.+|...|+.++|.++++.+.+ ...|-. .-|.-.
T Consensus       300 ~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~-~~dpir~~yw~~~  343 (349)
T 3q7a_A          300 PVPLALEYLADSFIEQNRVDDAAKVFEKLSS-EYDQMRAGYWEFR  343 (349)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-TTCGGGHHHHHHH
T ss_pred             CcHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-hhChHHHHHHHHH
Confidence            2334678888899999999999999998864 244444 344433

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=98.81  E-value=2.7e-08  Score=104.52  Aligned_cols=198  Identities=7%  Similarity=-0.076  Sum_probs=144.4

Q ss_pred             ccCChHHHHHHHHHHHHCCCCC-CHHHHHHH-------HHHHHhcCChHHHHHHHHHHHHcCCCCC--------------
Q 000951          748 KKKDLLMCSMLLNTMKMEGLLP-DKLTCHSL-------ILGFCETGMLEVGFKFLKKMIAEGTMVD--------------  805 (1211)
Q Consensus       748 ~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l-------~~~~~~~g~~~~A~~~~~~~~~~~~~~~--------------  805 (1211)
                      ..+++..|.+.|.++.+  +.| ....|..+       ..++...++..+++..+...+.  +.|+              
T Consensus        18 ~~~d~~~A~~~F~~a~~--~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~   93 (282)
T 4f3v_A           18 LPMSEARSLDLFTEITN--YDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGD   93 (282)
T ss_dssp             TTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCC
T ss_pred             cCCCHHHHHHHHHHHHH--hChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCcccc
Confidence            46777777777777776  455 34466655       4555566666666666666555  2222              


Q ss_pred             --------HhhHHHHHHHHHhcCcHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhcchhhHHHHHHHHHHcCCCCC--
Q 000951          806 --------CFTFNVLMRKCCEAGEMGKAFDLFNIMNMLGVVPDTNTQDAIIMGLKRIAAFQESHFVLRGMAEKGLTPK--  875 (1211)
Q Consensus       806 --------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~g~~p~--  875 (1211)
                              ....-.+..++...|++++|.++|+.+...+  |+......++..+.+.+++++|+..|+...... .|.  
T Consensus        94 ~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~  170 (282)
T 4f3v_A           94 ITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLA  170 (282)
T ss_dssp             CEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHH
T ss_pred             cccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccH
Confidence                    1233456678889999999999998887543  544478888889999999999999998765511 221  


Q ss_pred             hhHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCC--chHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCcccCHHHHHHHH
Q 000951          876 CTQYITLINGMCRVGNFQGAFKLKDEMEALGISS--SDVAESAMVRGLAHCGKVEEAMLVLNRMLRMRLVPTIATFTTLI  953 (1211)
Q Consensus       876 ~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~p~~~~~~~L~  953 (1211)
                      ...+..++.++...|++++|+..|+++......|  ...+....+.++.+.|+.++|...|+++...+|.  ..++..|.
T Consensus       171 ~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~--~~~~~aL~  248 (282)
T 4f3v_A          171 GAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE--PKVAAALK  248 (282)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC--HHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc--HHHHHHHh
Confidence            2578899999999999999999999998544324  4457788899999999999999999999997754  55555553


Q ss_pred             H
Q 000951          954 H  954 (1211)
Q Consensus       954 ~  954 (1211)
                      .
T Consensus       249 ~  249 (282)
T 4f3v_A          249 D  249 (282)
T ss_dssp             C
T ss_pred             C
Confidence            3

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=98.79  E-value=7.5e-09  Score=115.54  Aligned_cols=150  Identities=9%  Similarity=-0.060  Sum_probs=111.5

Q ss_pred             hcchhhHHHHHHHHHHcCCCCC-hhHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCc---------------hHHHHHH
Q 000951          854 IAAFQESHFVLRGMAEKGLTPK-CTQYITLINGMCRVGNFQGAFKLKDEMEALGISSS---------------DVAESAM  917 (1211)
Q Consensus       854 ~g~~~eA~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~---------------~~~~~~l  917 (1211)
                      .+++++|+..|+..++  ..|+ ...+..++..+...|++++|+..|+++++.. +.+               ..++..+
T Consensus       126 L~~~~~A~~~~~~a~~--~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~-p~~~~~~~~~~~~~~~~~~~~~~nl  202 (336)
T 1p5q_A          126 LKSFEKAKESWEMNSE--EKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWL-EYESSFSNEEAQKAQALRLASHLNL  202 (336)
T ss_dssp             EEEEECCCCGGGCCHH--HHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCCCCCSHHHHHHHHHHHHHHHHH
T ss_pred             EeecccccchhcCCHH--HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh-hccccCChHHHHHHHHHHHHHHHHH
Confidence            3455666666655554  4453 3567777777777777777777777777653 222               4678888


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhCCcccCHHHHHHHHHHhhhhCCHHHHHHHHHHHHhcCCCCchH-HHHHHHHHHHhCCC
Q 000951          918 VRGLAHCGKVEEAMLVLNRMLRMRLVPTIATFTTLIHKFCKEAKFVDALKLKGTMELSGVKLDVV-SYNVLISGLCANGD  996 (1211)
Q Consensus       918 ~~~~~~~g~~~eA~~~~~~~~~~~~~p~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~  996 (1211)
                      +.+|.+.|++++|+..|+++++.+|. +..+|..++.+|...|++++|+..|+.....  .|+.. .+..++.++...|+
T Consensus       203 a~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--~P~~~~a~~~l~~~~~~~~~  279 (336)
T 1p5q_A          203 AMCHLKLQAFSAAIESCNKALELDSN-NEKGLSRRGEAHLAVNDFELARADFQKVLQL--YPNNKAAKTQLAVCQQRIRR  279 (336)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHHH
Confidence            88888899999999999999888765 8888888999999999999999888877665  77544 77888888888888


Q ss_pred             hhHH-HHHHHHHHH
Q 000951          997 VMPA-FELYEEMKH 1009 (1211)
Q Consensus       997 ~~~a-~~~~~~~~~ 1009 (1211)
                      +++| ...++.|..
T Consensus       280 ~~~a~~~~~~~~~~  293 (336)
T 1p5q_A          280 QLAREKKLYANMFE  293 (336)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            8888 456666643

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=98.79  E-value=1.6e-08  Score=97.37  Aligned_cols=108  Identities=9%  Similarity=-0.009  Sum_probs=62.2

Q ss_pred             HHHHHHcCCCCCh-hHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCc
Q 000951          864 LRGMAEKGLTPKC-TQYITLINGMCRVGNFQGAFKLKDEMEALGISSSDVAESAMVRGLAHCGKVEEAMLVLNRMLRMRL  942 (1211)
Q Consensus       864 ~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~  942 (1211)
                      |+++++  +.|+. ..+..++..+...|++++|+..|+++++.. +.+..+|..++.++...|++++|+..|+++++.+|
T Consensus        10 ~~~al~--~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p   86 (148)
T 2vgx_A           10 IAMLNE--ISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDI   86 (148)
T ss_dssp             HHHHTT--CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred             HHHHHc--CCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence            344443  44532 455556666666666666666666665542 44555566666666666666666666666666554


Q ss_pred             ccCHHHHHHHHHHhhhhCCHHHHHHHHHHHHhc
Q 000951          943 VPTIATFTTLIHKFCKEAKFVDALKLKGTMELS  975 (1211)
Q Consensus       943 ~p~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~  975 (1211)
                      . ++.+|..++.+|...|++++|+..|+.....
T Consensus        87 ~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~  118 (148)
T 2vgx_A           87 X-EPRFPFHAAECLLQXGELAEAESGLFLAQEL  118 (148)
T ss_dssp             T-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             C-CchHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            4 5556666666666666666666665544433

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=98.77  E-value=2.3e-07  Score=95.89  Aligned_cols=125  Identities=10%  Similarity=-0.091  Sum_probs=63.0

Q ss_pred             HHHHHHHHhhcchhhHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCchHHHHHHHHHHHhc
Q 000951          845 DAIIMGLKRIAAFQESHFVLRGMAEKGLTPKCTQYITLINGMCRVGNFQGAFKLKDEMEALGISSSDVAESAMVRGLAHC  924 (1211)
Q Consensus       845 ~~l~~~~~~~g~~~eA~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  924 (1211)
                      ..++..+...|++++|+..|++++    .|+...+..++.++...|++++|+..|+++++.. +.+..++..++.++...
T Consensus        10 ~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~   84 (213)
T 1hh8_A           10 WNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQT   84 (213)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHc
Confidence            334444444455555555554442    2344445555555555555555555555555442 33444555555555555


Q ss_pred             CCHHHHHHHHHHHHhCCcc--------------c-CHHHHHHHHHHhhhhCCHHHHHHHHHHHHh
Q 000951          925 GKVEEAMLVLNRMLRMRLV--------------P-TIATFTTLIHKFCKEAKFVDALKLKGTMEL  974 (1211)
Q Consensus       925 g~~~eA~~~~~~~~~~~~~--------------p-~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~  974 (1211)
                      |++++|++.|+++++..+.              | ...+|..++.+|...|++++|+..|+....
T Consensus        85 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~  149 (213)
T 1hh8_A           85 EKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATS  149 (213)
T ss_dssp             TCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             ccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence            5555555555555554322              0 124555555566666666666655554443

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=98.77  E-value=1.5e-07  Score=97.46  Aligned_cols=128  Identities=11%  Similarity=-0.055  Sum_probs=90.1

Q ss_pred             HHHHHHHHHhcCcHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhcchhhHHHHHHHHHHcCCCCC-hhHHHHHHHHHH
Q 000951          809 FNVLMRKCCEAGEMGKAFDLFNIMNMLGVVPDTNTQDAIIMGLKRIAAFQESHFVLRGMAEKGLTPK-CTQYITLINGMC  887 (1211)
Q Consensus       809 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~g~~p~-~~~~~~l~~~~~  887 (1211)
                      +..++..+...|++++|++.|++++    .|+...|..++..|...|++++|+..|+++++  ..|+ ...+..++.++.
T Consensus         9 ~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~~~~~~~~~~lg~~~~   82 (213)
T 1hh8_A            9 LWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSIN--RDKHLAVAYFQRGMLYY   82 (213)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCccchHHHHHHHHHHH
Confidence            4445556666677777777666653    34566677777777777777777777777776  4554 366777777777


Q ss_pred             hcCChhhHHHHHHHHHHcCCCCc----------------hHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCcc
Q 000951          888 RVGNFQGAFKLKDEMEALGISSS----------------DVAESAMVRGLAHCGKVEEAMLVLNRMLRMRLV  943 (1211)
Q Consensus       888 ~~g~~~eA~~~~~~~~~~~~~~~----------------~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~  943 (1211)
                      ..|++++|++.|+++++.. +.+                ..++..++.++...|++++|...|+++++..|.
T Consensus        83 ~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~  153 (213)
T 1hh8_A           83 QTEKYDLAIKDLKEALIQL-RGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSE  153 (213)
T ss_dssp             HTTCHHHHHHHHHHHHHTT-TTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCS
T ss_pred             HcccHHHHHHHHHHHHHhC-CCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCcc
Confidence            7777777777777776542 222                267888888999999999999999999887754

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=98.77  E-value=3.9e-07  Score=99.64  Aligned_cols=162  Identities=4%  Similarity=-0.101  Sum_probs=84.2

Q ss_pred             HHHHHhcCChHHHHHHHHHHHHcCC-CCCH----hhHHHHHHHHHhcCcHHHHHHHHHHHHHCCCCC-C----hhhHHHH
Q 000951          778 ILGFCETGMLEVGFKFLKKMIAEGT-MVDC----FTFNVLMRKCCEAGEMGKAFDLFNIMNMLGVVP-D----TNTQDAI  847 (1211)
Q Consensus       778 ~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~----~~~~~~l  847 (1211)
                      +..+...|++++|..+++++.+... .|+.    ..+..++..|...|++++|++.|+++++..... +    ..+++.+
T Consensus        82 i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~l  161 (293)
T 3u3w_A           82 VIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAI  161 (293)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHH
T ss_pred             HHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence            4556666777777777777665321 1111    122235555556666666666666666532221 1    1245666


Q ss_pred             HHHHHhhcchhhHHHHHHHHHH----c-CCCCCh-hHHHHHHHHHHhcCChhhHHHHHHHHHHc----CCCC-chHHHHH
Q 000951          848 IMGLKRIAAFQESHFVLRGMAE----K-GLTPKC-TQYITLINGMCRVGNFQGAFKLKDEMEAL----GISS-SDVAESA  916 (1211)
Q Consensus       848 ~~~~~~~g~~~eA~~~~~~~~~----~-g~~p~~-~~~~~l~~~~~~~g~~~eA~~~~~~~~~~----~~~~-~~~~~~~  916 (1211)
                      +.+|...|++++|+..|+++++    . +..|.. .++..++.+|...|++++|+++++++++.    +..+ -..++..
T Consensus       162 g~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~  241 (293)
T 3u3w_A          162 ANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQ  241 (293)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence            6666666666666666666653    1 111111 35555666666666666666666655432    1111 1334555


Q ss_pred             HHHHHHhcCC-HHHHHHHHHHHHh
Q 000951          917 MVRGLAHCGK-VEEAMLVLNRMLR  939 (1211)
Q Consensus       917 l~~~~~~~g~-~~eA~~~~~~~~~  939 (1211)
                      ++.+|.+.|+ +++|++.|+++++
T Consensus       242 lg~~~~~~g~~~~~A~~~~~~Al~  265 (293)
T 3u3w_A          242 RGECLRKLEYEEAEIEDAYKKASF  265 (293)
T ss_dssp             HHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHhCCcHHHHHHHHHHHHH
Confidence            5555555553 4555555555543

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=98.76  E-value=1.9e-06  Score=93.67  Aligned_cols=225  Identities=9%  Similarity=-0.037  Sum_probs=146.0

Q ss_pred             ccCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcC-ChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhc-C-cHH
Q 000951          748 KKKDLLMCSMLLNTMKMEGLLP-DKLTCHSLILGFCETG-MLEVGFKFLKKMIAEGTMVDCFTFNVLMRKCCEA-G-EMG  823 (1211)
Q Consensus       748 ~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g-~~~  823 (1211)
                      +.+..++|++++.+++.  +.| +..+|+.-..++...| .+++++++++.++..+ +-+..+|+....++... + +++
T Consensus        66 ~~e~se~AL~lt~~~L~--~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~~~~~  142 (349)
T 3q7a_A           66 KEEKSERALELTEIIVR--MNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISPQDPV  142 (349)
T ss_dssp             TTCCSHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCCSCCH
T ss_pred             hCCCCHHHHHHHHHHHH--hCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcCCChH
Confidence            34445667777777776  455 3345666666666666 4777777777777643 22455666666666665 5 677


Q ss_pred             HHHHHHHHHHHCCCCCChhhHHHHHHHHHhhcchh--------hHHHHHHHHHHcCCCCC-hhHHHHHHHHHHhcCC---
Q 000951          824 KAFDLFNIMNMLGVVPDTNTQDAIIMGLKRIAAFQ--------ESHFVLRGMAEKGLTPK-CTQYITLINGMCRVGN---  891 (1211)
Q Consensus       824 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~--------eA~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~---  891 (1211)
                      +++++++++++.. +.+...|+.-..++.+.|+++        ++++.++++++  .+|. ..+|.....++.+.+.   
T Consensus       143 ~EL~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~--~dp~N~SAW~~R~~lL~~l~~~~~  219 (349)
T 3q7a_A          143 SEIEYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLR--VDGRNNSAWGWRWYLRVSRPGAET  219 (349)
T ss_dssp             HHHHHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHTTSTTCCC
T ss_pred             HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhcccccc
Confidence            7777777777643 345667777777777777766        78888888887  6664 4677777777777765   


Q ss_pred             ----hhhHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCH--------------------HHHHHHHHHHHhCC-----c
Q 000951          892 ----FQGAFKLKDEMEALGISSSDVAESAMVRGLAHCGKV--------------------EEAMLVLNRMLRMR-----L  942 (1211)
Q Consensus       892 ----~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~--------------------~eA~~~~~~~~~~~-----~  942 (1211)
                          ++++++++++++.. .+.+..+|+.+..++.+.|+-                    .+-.++...+....     .
T Consensus       220 ~~~~~~eELe~~~~aI~~-~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  298 (349)
T 3q7a_A          220 SSRSLQDELIYILKSIHL-IPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTP  298 (349)
T ss_dssp             CHHHHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCC
T ss_pred             chHHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccC
Confidence                67888888888766 366777777777777666553                    22233322222221     0


Q ss_pred             ccCHHHHHHHHHHhhhhCCHHHHHHHHHHHHhcCCCCc
Q 000951          943 VPTIATFTTLIHKFCKEAKFVDALKLKGTMELSGVKLD  980 (1211)
Q Consensus       943 ~p~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~p~  980 (1211)
                      .+.+.++.-|+.+|...|+.++|.++++.+.. ..+|-
T Consensus       299 ~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~-~~dpi  335 (349)
T 3q7a_A          299 LPVPLALEYLADSFIEQNRVDDAAKVFEKLSS-EYDQM  335 (349)
T ss_dssp             SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-TTCGG
T ss_pred             CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-hhChH
Confidence            23777888899999999999999998887643 23563

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=98.75  E-value=6e-07  Score=98.17  Aligned_cols=91  Identities=10%  Similarity=0.058  Sum_probs=44.5

Q ss_pred             HHHHHhcCcHHHHHHHHHHHHHCCCC-CCh----hhHHHHHHHHHhhcchhhHHHHHHHHHHcCCC-CCh----hHHHHH
Q 000951          813 MRKCCEAGEMGKAFDLFNIMNMLGVV-PDT----NTQDAIIMGLKRIAAFQESHFVLRGMAEKGLT-PKC----TQYITL  882 (1211)
Q Consensus       813 ~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~----~~~~~l~~~~~~~g~~~eA~~~~~~~~~~g~~-p~~----~~~~~l  882 (1211)
                      +..+...|++++|.+.+++..+.... |+.    ..+..++..+...|++++|+..|+++++.... ++.    .++..+
T Consensus        82 i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~l  161 (293)
T 3u3w_A           82 VIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAI  161 (293)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHH
T ss_pred             HHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence            45566677777777777777652211 111    11223444455555555555555555552111 111    134455


Q ss_pred             HHHHHhcCChhhHHHHHHHHH
Q 000951          883 INGMCRVGNFQGAFKLKDEME  903 (1211)
Q Consensus       883 ~~~~~~~g~~~eA~~~~~~~~  903 (1211)
                      +.+|...|++++|+.+|++++
T Consensus       162 g~~y~~~g~~~~A~~~~~~al  182 (293)
T 3u3w_A          162 ANIYAENGYLKKGIDLFEQIL  182 (293)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHH
Confidence            555555555555555555544

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=98.75  E-value=7.3e-07  Score=97.47  Aligned_cols=93  Identities=4%  Similarity=-0.062  Sum_probs=41.6

Q ss_pred             HHHHHHHhcCChHHHHHHHHHHHHcCCCCC-----HhhHHHHHHHHHhcCcHHHHHHHHHHHHHCCCCC-C----hhhHH
Q 000951          776 SLILGFCETGMLEVGFKFLKKMIAEGTMVD-----CFTFNVLMRKCCEAGEMGKAFDLFNIMNMLGVVP-D----TNTQD  845 (1211)
Q Consensus       776 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~----~~~~~  845 (1211)
                      ..+..+...|++++|++.+++.++......     ...+..++..|...|++++|++.|+++.+..... +    ..+|+
T Consensus        80 ~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  159 (293)
T 2qfc_A           80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN  159 (293)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHH
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHH
Confidence            344555566666666666666555321110     0112233344455555555555555554321110 0    22344


Q ss_pred             HHHHHHHhhcchhhHHHHHHHHH
Q 000951          846 AIIMGLKRIAAFQESHFVLRGMA  868 (1211)
Q Consensus       846 ~l~~~~~~~g~~~eA~~~~~~~~  868 (1211)
                      .++..|...|++++|+..|++++
T Consensus       160 ~lg~~y~~~~~~~~A~~~~~kal  182 (293)
T 2qfc_A          160 AIANIYAENGYLKKGIDLFEQIL  182 (293)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHH
Confidence            44444444444444444444444

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=98.75  E-value=4.8e-06  Score=97.51  Aligned_cols=218  Identities=6%  Similarity=-0.079  Sum_probs=109.6

Q ss_pred             HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCC-hHHHHHHHH
Q 000951          436 TRKAKAVLCKMYRDGLVPNKIIYSTLIYYFCKMGKVTEAMKVYAVMNRNAQGSDHFTCNMLVASLCKGGK-VCEAEDYVG  514 (1211)
Q Consensus       436 ~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~-~~~A~~~~~  514 (1211)
                      ++.|..+|+.++..  -|.              ++++.+..+|+..+..  .|++..|...+....+.+. .+....+|+
T Consensus        11 i~~aR~vyer~l~~--~P~--------------~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe   72 (493)
T 2uy1_A           11 LSSPSAIMEHARRL--YMS--------------KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKLYEVYE   72 (493)
T ss_dssp             -CCHHHHHHHHHHH--HHT--------------TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CTHHHHH
T ss_pred             hHHHHHHHHHHHHH--CCC--------------CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHHHHHHH
Confidence            66666666666543  222              7788888888877764  3477777777666655552 345566676


Q ss_pred             HHHhc-CCC-CCHHHHHHHHHHHH----hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhh
Q 000951          515 HMKRI-GVV-PNSITFDCMIDGYG----TLGDGLKAFSMFDEMVKLGHHPSIFTYGSLLKGLCKGGNLKEAKRFLNSLHH  588 (1211)
Q Consensus       515 ~~~~~-g~~-p~~~~~~~li~~~~----~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~  588 (1211)
                      ..... |.. ++...|...+..+.    ..++.+.+.++|++.+......-...|..... +.+..+...+..++...  
T Consensus        73 ~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~-fE~~~~~~~~~~~~~~~--  149 (493)
T 2uy1_A           73 FTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFEN-FELELNKITGKKIVGDT--  149 (493)
T ss_dssp             HHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHH-HHHHHCHHHHHHHHHHH--
T ss_pred             HHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHH-HHHHhccccHHHHHHHH--
Confidence            66543 322 25566776666543    23456677777777775321111111211111 11111111222221111  


Q ss_pred             CCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCC--C-----hHHHHHHHHHHHHcCC
Q 000951          589 IPSAVDTVAYNTILAETCKSGNLWEAIVLLDEMVQFNLLPDRYTYTILLAGLCRKG--K-----VVSALLFFEKVVSKRT  661 (1211)
Q Consensus       589 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g--~-----~~~A~~~~~~~~~~~~  661 (1211)
                                         .+.+..|..+++.+...-...+...|...+.--...+  -     .+.+..+|++++... 
T Consensus       150 -------------------~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~-  209 (493)
T 2uy1_A          150 -------------------LPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSF-  209 (493)
T ss_dssp             -------------------HHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-
T ss_pred             -------------------hHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcC-
Confidence                               1223334444444332100012334544443322211  1     234566777777753 


Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 000951          662 FSPNNVMFTCLVDGLFKAGQSKAAMHISKIMDKE  695 (1211)
Q Consensus       662 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  695 (1211)
                       +.....|...+..+...|+.+.|..+++.++..
T Consensus       210 -p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~  242 (493)
T 2uy1_A          210 -YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM  242 (493)
T ss_dssp             -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             -CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Confidence             344566666677777777788888888777765

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=98.74  E-value=3.6e-08  Score=94.97  Aligned_cols=108  Identities=10%  Similarity=-0.058  Sum_probs=93.7

Q ss_pred             HHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCcccCHHHHHHHHHHhhhhCCHHHHHHHHHHHHhcCC
Q 000951          898 LKDEMEALGISSSDVAESAMVRGLAHCGKVEEAMLVLNRMLRMRLVPTIATFTTLIHKFCKEAKFVDALKLKGTMELSGV  977 (1211)
Q Consensus       898 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~p~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~  977 (1211)
                      .|+++++.. +.+...+..++..+...|++++|+..|+++++.+|. ++..|..++.+|...|++++|+..|+.....  
T Consensus         9 ~~~~al~~~-p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--   84 (148)
T 2vgx_A            9 TIAMLNEIS-SDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHY-DSRFFLGLGACRQAMGQYDLAIHSYSYGAVM--   84 (148)
T ss_dssp             SHHHHTTCC-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--
T ss_pred             hHHHHHcCC-HhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--
Confidence            455555442 445667888999999999999999999999998876 9999999999999999999999999987766  


Q ss_pred             CCc-hHHHHHHHHHHHhCCChhHHHHHHHHHHH
Q 000951          978 KLD-VVSYNVLISGLCANGDVMPAFELYEEMKH 1009 (1211)
Q Consensus       978 ~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 1009 (1211)
                      .|+ ...++.++.+|...|++++|.+.+++..+
T Consensus        85 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~  117 (148)
T 2vgx_A           85 DIXEPRFPFHAAECLLQXGELAEAESGLFLAQE  117 (148)
T ss_dssp             STTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            785 45889999999999999999999999876

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=98.73  E-value=7e-06  Score=96.11  Aligned_cols=385  Identities=7%  Similarity=-0.092  Sum_probs=190.9

Q ss_pred             cC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHHcCC-HHHHH
Q 000951          538 LG-DGLKAFSMFDEMVKLGHHPSIFTYGSLLKGLCKGGNLKEAKRFLNSLHHIPSAVDTVAYNTILAETCKSGN-LWEAI  615 (1211)
Q Consensus       538 ~g-~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~-~~~A~  615 (1211)
                      .| +...|..+|+.++..  -|.              ++++.+..+|++.+..-  |+...|...+....+.+. .+...
T Consensus         7 ~~~~i~~aR~vyer~l~~--~P~--------------~~~e~~~~iferal~~~--ps~~LW~~Y~~f~~~~~~~~~~i~   68 (493)
T 2uy1_A            7 MGVELSSPSAIMEHARRL--YMS--------------KDYRSLESLFGRCLKKS--YNLDLWMLYIEYVRKVSQKKFKLY   68 (493)
T ss_dssp             -----CCHHHHHHHHHHH--HHT--------------TCHHHHHHHHHHHSTTC--CCHHHHHHHHHHHHHHC----CTH
T ss_pred             cCcchHHHHHHHHHHHHH--CCC--------------CCHHHHHHHHHHHhccC--CCHHHHHHHHHHHHHhCchHHHHH
Confidence            45 366677777766642  232              78888888888887754  366777777777666653 34456


Q ss_pred             HHHHHHHhC-CCC-CCHHHHHHHHHHHH----hCCChHHHHHHHHHHHHcCCCCCC--HHHHHHHHHHHHHcCCHHHHHH
Q 000951          616 VLLDEMVQF-NLL-PDRYTYTILLAGLC----RKGKVVSALLFFEKVVSKRTFSPN--NVMFTCLVDGLFKAGQSKAAMH  687 (1211)
Q Consensus       616 ~~~~~m~~~-~~~-p~~~~~~~li~~~~----~~g~~~~A~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~  687 (1211)
                      .+|+..+.. |.. ++...|...+..+.    .+|+.+.+..+|++++..   ++.  ...|...... .+......+..
T Consensus        69 ~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~---P~~~~~~lw~~Y~~f-E~~~~~~~~~~  144 (493)
T 2uy1_A           69 EVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQT---PMGSLSELWKDFENF-ELELNKITGKK  144 (493)
T ss_dssp             HHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTS---CCTTHHHHHHHHHHH-HHHHCHHHHHH
T ss_pred             HHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhC---hhhhHHHHHHHHHHH-HHHhccccHHH
Confidence            677766652 322 35566666665443    235667777777777762   221  1222222111 11111111211


Q ss_pred             HHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC--C-----hHHHHHHHH
Q 000951          688 ISKIMDKEGVYPDTIAFNAVMDGFSRMGNMMMANDLLSTMRSRKLCPSLATYNILLHGYSKKK--D-----LLMCSMLLN  760 (1211)
Q Consensus       688 ~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g--~-----~~~A~~~~~  760 (1211)
                      +....                     .+.+..|..+++.+...-...+...|...+.--...+  -     .+.+..+|+
T Consensus       145 ~~~~~---------------------~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye  203 (493)
T 2uy1_A          145 IVGDT---------------------LPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHN  203 (493)
T ss_dssp             HHHHH---------------------HHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHH
T ss_pred             HHHHH---------------------hHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHH
Confidence            11111                     1123333433333321100012334444333221110  0     233455666


Q ss_pred             HHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHHHHHCCCCCC
Q 000951          761 TMKMEGLLPDKLTCHSLILGFCETGMLEVGFKFLKKMIAEGTMVDCFTFNVLMRKCCEAGEMGKAFDLFNIMNMLGVVPD  840 (1211)
Q Consensus       761 ~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~  840 (1211)
                      +++... ..+...|...+.-+...|+.++|..+|++++..  +.+...+..    |....+.++.   ++.+.+      
T Consensus       204 ~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~~----y~~~~e~~~~---~~~l~~------  267 (493)
T 2uy1_A          204 YILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSLY----YGLVMDEEAV---YGDLKR------  267 (493)
T ss_dssp             HHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHHH----HHHHTTCTHH---HHHHHH------
T ss_pred             HHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHHH----HHhhcchhHH---HHHHHH------
Confidence            665532 123445555555555566666666666666664  222222211    1111111111   111111      


Q ss_pred             hhhHHHHHHHHHhhcchhhHHHHHHHHHHcCCCC--C-hhHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCchHHHHHH
Q 000951          841 TNTQDAIIMGLKRIAAFQESHFVLRGMAEKGLTP--K-CTQYITLINGMCRVGNFQGAFKLKDEMEALGISSSDVAESAM  917 (1211)
Q Consensus       841 ~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~g~~p--~-~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~l  917 (1211)
                               .+.          .+.. ...+..+  + ...|...+....+.+..+.|..+|+++ ... +.+..+|...
T Consensus       268 ---------~~~----------~~~~-~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~~v~i~~  325 (493)
T 2uy1_A          268 ---------KYS----------MGEA-ESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNE-GVGPHVFIYC  325 (493)
T ss_dssp             ---------HTC---------------------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTS-CCCHHHHHHH
T ss_pred             ---------HHH----------hhcc-chhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCC-CCChHHHHHH
Confidence                     000          0000 0000001  1 144566666666677788888888888 321 2344455444


Q ss_pred             HHHHHhcC-CHHHHHHHHHHHHhCCcccCHHHHHHHHHHhhhhCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhCCC
Q 000951          918 VRGLAHCG-KVEEAMLVLNRMLRMRLVPTIATFTTLIHKFCKEAKFVDALKLKGTMELSGVKLDVVSYNVLISGLCANGD  996 (1211)
Q Consensus       918 ~~~~~~~g-~~~eA~~~~~~~~~~~~~p~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~  996 (1211)
                      +..-...+ +.+.|..+|+.+++..+. ++..|...+......|+.+.|..+|+...     .....|...+..-...|+
T Consensus       326 A~lE~~~~~d~~~ar~ife~al~~~~~-~~~~~~~yid~e~~~~~~~~aR~l~er~~-----k~~~lw~~~~~fE~~~G~  399 (493)
T 2uy1_A          326 AFIEYYATGSRATPYNIFSSGLLKHPD-STLLKEEFFLFLLRIGDEENARALFKRLE-----KTSRMWDSMIEYEFMVGS  399 (493)
T ss_dssp             HHHHHHHHCCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHSC-----CBHHHHHHHHHHHHHHSC
T ss_pred             HHHHHHHCCChHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCCC
Confidence            44444444 588888888888886543 56667777777778888888888887651     233455555555556688


Q ss_pred             hhHHHHHHHHHHH
Q 000951          997 VMPAFELYEEMKH 1009 (1211)
Q Consensus       997 ~~~a~~~~~~~~~ 1009 (1211)
                      .+.+.++++++.+
T Consensus       400 ~~~~r~v~~~~~~  412 (493)
T 2uy1_A          400 MELFRELVDQKMD  412 (493)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            8888887776654

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=98.72  E-value=1.7e-07  Score=92.38  Aligned_cols=123  Identities=11%  Similarity=0.023  Sum_probs=58.1

Q ss_pred             HHHHHHHHHhhcchhhHHHHHHHHHHcCCCCC-hhHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCchHHHHHHHHHHH
Q 000951          844 QDAIIMGLKRIAAFQESHFVLRGMAEKGLTPK-CTQYITLINGMCRVGNFQGAFKLKDEMEALGISSSDVAESAMVRGLA  922 (1211)
Q Consensus       844 ~~~l~~~~~~~g~~~eA~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~  922 (1211)
                      |..++..+...|++++|+..|+++++  ..|+ ..++..++.++...|++++|...++++++.. +.+..++..++.++.
T Consensus        16 ~~~~a~~~~~~~~~~~A~~~~~~al~--~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~   92 (166)
T 1a17_A           16 LKTQANDYFKAKDYENAIKFYSQAIE--LNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNM   92 (166)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHH
Confidence            44444444455555555555555544  3332 2444455555555555555555555554432 333444555555555


Q ss_pred             hcCCHHHHHHHHHHHHhCCcccCHHHHHH--HHHHhhhhCCHHHHHHHHH
Q 000951          923 HCGKVEEAMLVLNRMLRMRLVPTIATFTT--LIHKFCKEAKFVDALKLKG  970 (1211)
Q Consensus       923 ~~g~~~eA~~~~~~~~~~~~~p~~~~~~~--L~~~~~~~g~~~~A~~~~~  970 (1211)
                      ..|++++|+..|+++++..+. +...+..  ++..+...|++++|+..+.
T Consensus        93 ~~~~~~~A~~~~~~a~~~~p~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~  141 (166)
T 1a17_A           93 ALGKFRAALRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDE  141 (166)
T ss_dssp             HTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHHccc
Confidence            555555555555555554433 3333322  2222444455555555444

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=98.72  E-value=5e-07  Score=98.82  Aligned_cols=131  Identities=7%  Similarity=-0.024  Sum_probs=84.8

Q ss_pred             HHHHHHHHHhcCChhhHHHHHHHHHHcCC---CCc--hHHHHHHHHHHHhcCCHHHHHHHHHHHHh---CCcc-c--CHH
Q 000951          879 YITLINGMCRVGNFQGAFKLKDEMEALGI---SSS--DVAESAMVRGLAHCGKVEEAMLVLNRMLR---MRLV-P--TIA  947 (1211)
Q Consensus       879 ~~~l~~~~~~~g~~~eA~~~~~~~~~~~~---~~~--~~~~~~l~~~~~~~g~~~eA~~~~~~~~~---~~~~-p--~~~  947 (1211)
                      +..++..+...|++++|+..|+++++...   .+.  ..+++.++.+|...|++++|+..|+++++   ..+. +  ...
T Consensus       118 ~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~  197 (293)
T 2qfc_A          118 QYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVK  197 (293)
T ss_dssp             HHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHH
Confidence            33455566666777777777777764311   111  33667777777778888888888777773   2211 1  125


Q ss_pred             HHHHHHHHhhhhCCHHHHHHHHHHHHhcCCC----Cc-hHHHHHHHHHHHhCCChhHH-HHHHHHHHH
Q 000951          948 TFTTLIHKFCKEAKFVDALKLKGTMELSGVK----LD-VVSYNVLISGLCANGDVMPA-FELYEEMKH 1009 (1211)
Q Consensus       948 ~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~----p~-~~~~~~l~~~~~~~g~~~~a-~~~~~~~~~ 1009 (1211)
                      ++..+|.+|...|++++|+..++........    +. ...|+.++.+|...|++++| ...+++..+
T Consensus       198 ~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~  265 (293)
T 2qfc_A          198 VRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASF  265 (293)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred             HHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence            7788888888888888888887755433111    11 34678888888888888888 666776543

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=98.72  E-value=2.9e-06  Score=91.93  Aligned_cols=195  Identities=9%  Similarity=-0.065  Sum_probs=104.0

Q ss_pred             hHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCc--HHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhcc-hhhHHHH
Q 000951          787 LEVGFKFLKKMIAEGTMVDCFTFNVLMRKCCEAGE--MGKAFDLFNIMNMLGVVPDTNTQDAIIMGLKRIAA-FQESHFV  863 (1211)
Q Consensus       787 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~eA~~~  863 (1211)
                      +++++.+++.++..+ +-+..+|+....++...|.  ++++++.++++++.. +.|...|+.-..++...|. +++++..
T Consensus        90 l~~EL~~~~~~L~~~-PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~  167 (331)
T 3dss_A           90 VKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAF  167 (331)
T ss_dssp             HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred             HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHH
Confidence            344555555555432 1234444444444444442  455555555555433 2344455555555555554 3555555


Q ss_pred             HHHHHHcCCCCC-hhHHHHHHHHHHhc--------------CChhhHHHHHHHHHHcCCCCchHHHHHHHHHHHhc----
Q 000951          864 LRGMAEKGLTPK-CTQYITLINGMCRV--------------GNFQGAFKLKDEMEALGISSSDVAESAMVRGLAHC----  924 (1211)
Q Consensus       864 ~~~~~~~g~~p~-~~~~~~l~~~~~~~--------------g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----  924 (1211)
                      +.++++  .+|. ..+|.....++.+.              +.++++++++++++... |.|..+|+-+..++.+.    
T Consensus       168 ~~~~I~--~~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~-P~d~SaW~Y~r~ll~~~~~~~  244 (331)
T 3dss_A          168 TDSLIT--RNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGAGSGRC  244 (331)
T ss_dssp             HHHHHH--HCSCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHSSSCGG
T ss_pred             HHHHHH--HCCCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccCcc
Confidence            555555  4443 24444444444433              34566666666666552 55555665444444433    


Q ss_pred             -------CCHHHHHHHHHHHHhCCcccCHHHHHHHHHHh---hhhCCHHHHHHHHHHHHhcCCCCchH-HHHHHHH
Q 000951          925 -------GKVEEAMLVLNRMLRMRLVPTIATFTTLIHKF---CKEAKFVDALKLKGTMELSGVKLDVV-SYNVLIS  989 (1211)
Q Consensus       925 -------g~~~eA~~~~~~~~~~~~~p~~~~~~~L~~~~---~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~  989 (1211)
                             +.++++++.++++++..|. +..++.+++...   ...|..++....+..+.+.  +|--. -|..+.+
T Consensus       245 ~~~~~~~~~l~~el~~~~elle~~pd-~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--Dp~r~~~y~d~~~  317 (331)
T 3dss_A          245 ELSVEKSTVLQSELESCKELQELEPE-NKWCLLTIILLMRALDPLLYEKETLQYFSTLKAV--DPMRAAYLDDLRS  317 (331)
T ss_dssp             GCCHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHH--CGGGHHHHHHHHH
T ss_pred             ccchHHHHHHHHHHHHHHHHHhhCcc-cchHHHHHHHHHHhhcccccHHHHHHHHHHHHHh--CcchhhHHHHHHH
Confidence                   4578889999999887755 444433333222   2357777888888777766  77444 4444444

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=98.71  E-value=3.5e-08  Score=107.06  Aligned_cols=92  Identities=7%  Similarity=-0.089  Sum_probs=42.1

Q ss_pred             HHHHHHHHHhcCcHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhcchhhHHHHHHHHHHcCCCCC-hhHHHHHHHHHH
Q 000951          809 FNVLMRKCCEAGEMGKAFDLFNIMNMLGVVPDTNTQDAIIMGLKRIAAFQESHFVLRGMAEKGLTPK-CTQYITLINGMC  887 (1211)
Q Consensus       809 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~g~~p~-~~~~~~l~~~~~  887 (1211)
                      +..++..+...|++++|++.|+++++.. +.+...|..++.+|.+.|++++|+..|+++++  +.|+ ...+..++.++.
T Consensus         7 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~   83 (281)
T 2c2l_A            7 LKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALE--LDGQSVKAHFFLGQCQL   83 (281)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT--SCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHH
Confidence            3344444444444444444444444321 11344444444444444444444444444444  4443 244444555555


Q ss_pred             hcCChhhHHHHHHHHH
Q 000951          888 RVGNFQGAFKLKDEME  903 (1211)
Q Consensus       888 ~~g~~~eA~~~~~~~~  903 (1211)
                      ..|++++|...|++++
T Consensus        84 ~~g~~~~A~~~~~~al   99 (281)
T 2c2l_A           84 EMESYDEAIANLQRAY   99 (281)
T ss_dssp             HTTCHHHHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHH
Confidence            5555555555555544

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=98.71  E-value=4.3e-08  Score=106.28  Aligned_cols=192  Identities=11%  Similarity=-0.021  Sum_probs=132.8

Q ss_pred             ChhhHHHHHHHHHhhcchhhHHHHHHHHHHcCCCCC-hhHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCchHHHHHHH
Q 000951          840 DTNTQDAIIMGLKRIAAFQESHFVLRGMAEKGLTPK-CTQYITLINGMCRVGNFQGAFKLKDEMEALGISSSDVAESAMV  918 (1211)
Q Consensus       840 ~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~  918 (1211)
                      +...+..++..+...|++++|+..|+++++  ..|+ ...|..++.++...|++++|+..++++++.. +.+..++..++
T Consensus         3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg   79 (281)
T 2c2l_A            3 SAQELKEQGNRLFVGRKYPEAAACYGRAIT--RNPLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLG   79 (281)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence            466788899999999999999999999999  7785 5889999999999999999999999998763 66778899999


Q ss_pred             HHHHhcCCHHHHHHHHHHHHhCCcccCHHHHHHHHHHhhhhCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhCCChh
Q 000951          919 RGLAHCGKVEEAMLVLNRMLRMRLVPTIATFTTLIHKFCKEAKFVDALKLKGTMELSGVKLDVVSYNVLISGLCANGDVM  998 (1211)
Q Consensus       919 ~~~~~~g~~~eA~~~~~~~~~~~~~p~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~  998 (1211)
                      .+|...|++++|+..|+++++.+|. +...+...+....+..+......    .......++......+...+  .|+++
T Consensus        80 ~~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~i~~~l~~l~--~~~~~  152 (281)
T 2c2l_A           80 QCQLEMESYDEAIANLQRAYSLAKE-QRLNFGDDIPSALRIAKKKRWNS----IEERRIHQESELHSYLTRLI--AAERE  152 (281)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHH-TTCCCCSHHHHHHHHHHHHHHHH----HHHTCCCCCCHHHHHHHHHH--HHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhCcc-chhhHHHHHHHHHHHHHHHHHHH----HHHHHHhhhHHHHHHHHHHH--HHHHH
Confidence            9999999999999999999987654 32222222222221111111111    12222233444555555543  58889


Q ss_pred             HHHHHHHHHHHcCCccCh-hhHHHHHHHHHhcccchHHHHHHHHHH
Q 000951          999 PAFELYEEMKHKGLCPNS-TTYSVLIDAISKKENNLVKGEILLKDI 1043 (1211)
Q Consensus       999 ~a~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~~~~~~~a~~~~~~l 1043 (1211)
                      +|++.++...+  ..|+. .....+...+...++..++++.+|...
T Consensus       153 ~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a  196 (281)
T 2c2l_A          153 RELEECQRNHE--GHEDDGHIRAQQACIEAKHDKYMADMDELFSQV  196 (281)
T ss_dssp             HHHTTTSGGGT--TTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHhhhc--cccchhhhhhHHHHHHHHHHHHHHHHHHHHHhh
Confidence            99988887754  46655 444444444444434344477777655

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=98.71  E-value=1.5e-07  Score=88.53  Aligned_cols=116  Identities=12%  Similarity=-0.006  Sum_probs=57.9

Q ss_pred             hhhHHHHHHHHHhhcchhhHHHHHHHHHHcCCCCC-hhHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCchHHHHHHHH
Q 000951          841 TNTQDAIIMGLKRIAAFQESHFVLRGMAEKGLTPK-CTQYITLINGMCRVGNFQGAFKLKDEMEALGISSSDVAESAMVR  919 (1211)
Q Consensus       841 ~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~  919 (1211)
                      ...|..++..+...|++++|+..|+++++  ..|+ ...+..++.++...|++++|+..++++++.. +.+..++..++.
T Consensus        16 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~--~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~   92 (133)
T 2lni_A           16 ALMVKNKGNECFQKGDYPQAMKHYTEAIK--RNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRKAA   92 (133)
T ss_dssp             HHHHHHHHHHHHHTTCSHHHHHHHHHHHT--TCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHHHH
Confidence            33444455555555555555555555554  3442 2445555555555555555555555555432 334445555555


Q ss_pred             HHHhcCCHHHHHHHHHHHHhCCcccCHHHHHHHHHHhhhhC
Q 000951          920 GLAHCGKVEEAMLVLNRMLRMRLVPTIATFTTLIHKFCKEA  960 (1211)
Q Consensus       920 ~~~~~g~~~eA~~~~~~~~~~~~~p~~~~~~~L~~~~~~~g  960 (1211)
                      ++...|++++|++.|+++++..+. +...+..++.++...|
T Consensus        93 ~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~  132 (133)
T 2lni_A           93 ALEAMKDYTKAMDVYQKALDLDSS-CKEAADGYQRCMMAQY  132 (133)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCGG-GTHHHHHHHHHHHHHT
T ss_pred             HHHHHhhHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHhc
Confidence            555555555555555555554433 4444555555544443

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=98.69  E-value=5.7e-08  Score=92.95  Aligned_cols=102  Identities=12%  Similarity=-0.065  Sum_probs=63.9

Q ss_pred             CCCCh-hHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCcccCHHHHH
Q 000951          872 LTPKC-TQYITLINGMCRVGNFQGAFKLKDEMEALGISSSDVAESAMVRGLAHCGKVEEAMLVLNRMLRMRLVPTIATFT  950 (1211)
Q Consensus       872 ~~p~~-~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~p~~~~~~  950 (1211)
                      ..|+. ..+..++..+...|++++|+..|+++++.. +.+...|..++.++...|++++|+..|+++++.+|. ++..|.
T Consensus        13 ~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~   90 (142)
T 2xcb_A           13 LSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMDIN-EPRFPF   90 (142)
T ss_dssp             CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CcHHHH
Confidence            44532 455566666666666666666666666552 445556666666666666666666666666666544 566666


Q ss_pred             HHHHHhhhhCCHHHHHHHHHHHHhc
Q 000951          951 TLIHKFCKEAKFVDALKLKGTMELS  975 (1211)
Q Consensus       951 ~L~~~~~~~g~~~~A~~~~~~~~~~  975 (1211)
                      .++.+|...|++++|+..|+.....
T Consensus        91 ~lg~~~~~~g~~~~A~~~~~~al~~  115 (142)
T 2xcb_A           91 HAAECHLQLGDLDGAESGFYSARAL  115 (142)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            6666666666666666666655443

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=98.69  E-value=1.5e-07  Score=104.96  Aligned_cols=129  Identities=12%  Similarity=0.021  Sum_probs=104.3

Q ss_pred             hhhHHHHHHHHHhhcchhhHHHHHHHHHHcCCCCC----------------hhHHHHHHHHHHhcCChhhHHHHHHHHHH
Q 000951          841 TNTQDAIIMGLKRIAAFQESHFVLRGMAEKGLTPK----------------CTQYITLINGMCRVGNFQGAFKLKDEMEA  904 (1211)
Q Consensus       841 ~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~g~~p~----------------~~~~~~l~~~~~~~g~~~eA~~~~~~~~~  904 (1211)
                      ...|..++..|.+.|++++|+..|+++++  +.|+                ..+|..++.++.+.|++++|+..|+++++
T Consensus       147 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~--~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~  224 (336)
T 1p5q_A          147 STIVKERGTVYFKEGKYKQALLQYKKIVS--WLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALE  224 (336)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHH--HhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            44566666666666666666666666666  4443                36788999999999999999999999998


Q ss_pred             cCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCcccCHHHHHHHHHHhhhhCCHHHHHH-HHHHHH
Q 000951          905 LGISSSDVAESAMVRGLAHCGKVEEAMLVLNRMLRMRLVPTIATFTTLIHKFCKEAKFVDALK-LKGTME  973 (1211)
Q Consensus       905 ~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~p~~~~~~~L~~~~~~~g~~~~A~~-~~~~~~  973 (1211)
                      .. +.+..++..++.+|...|++++|+..|+++++.+|. +..++..++.++...|++++|.. .|+.|.
T Consensus       225 ~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~  292 (336)
T 1p5q_A          225 LD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPN-NKAAKTQLAVCQQRIRRQLAREKKLYANMF  292 (336)
T ss_dssp             HC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            74 667888999999999999999999999999998876 88899999999999999999844 555443

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=98.69  E-value=8.5e-08  Score=95.87  Aligned_cols=119  Identities=10%  Similarity=0.082  Sum_probs=68.3

Q ss_pred             hhcchhhHHHHHHHHHHcCCCCC-hhHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCchHHHHHHHHH-HHhcCCH--H
Q 000951          853 RIAAFQESHFVLRGMAEKGLTPK-CTQYITLINGMCRVGNFQGAFKLKDEMEALGISSSDVAESAMVRG-LAHCGKV--E  928 (1211)
Q Consensus       853 ~~g~~~eA~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~--~  928 (1211)
                      ..|++++|+..+++.++  ..|+ ...+..++.++...|++++|...|+++++.. +.+..++..++.+ +...|++  +
T Consensus        22 ~~~~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~~   98 (177)
T 2e2e_A           22 SQQNPEAQLQALQDKIR--ANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMTA   98 (177)
T ss_dssp             -----CCCCHHHHHHHH--HCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCCH
T ss_pred             hccCHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcchH
Confidence            44566666666666665  4453 3556666666666666666666666665542 3445555566666 5566665  6


Q ss_pred             HHHHHHHHHHhCCcccCHHHHHHHHHHhhhhCCHHHHHHHHHHHHhc
Q 000951          929 EAMLVLNRMLRMRLVPTIATFTTLIHKFCKEAKFVDALKLKGTMELS  975 (1211)
Q Consensus       929 eA~~~~~~~~~~~~~p~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~  975 (1211)
                      +|+..|+++++.+|. +..+|..++.+|...|++++|+..|+.....
T Consensus        99 ~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  144 (177)
T 2e2e_A           99 QTRAMIDKALALDSN-EITALMLLASDAFMQANYAQAIELWQKVMDL  144 (177)
T ss_dssp             HHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence            666666666665544 5566666666666666666666666554444

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=98.67  E-value=9.3e-08  Score=95.59  Aligned_cols=125  Identities=9%  Similarity=0.095  Sum_probs=105.1

Q ss_pred             HHhcCChhhHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCcccCHHHHHHHHHH-hhhhCCH--
Q 000951          886 MCRVGNFQGAFKLKDEMEALGISSSDVAESAMVRGLAHCGKVEEAMLVLNRMLRMRLVPTIATFTTLIHK-FCKEAKF--  962 (1211)
Q Consensus       886 ~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~p~~~~~~~L~~~-~~~~g~~--  962 (1211)
                      +...|++++|+..++++++.. +.+..++..++.+|...|++++|+..|+++++.+|. +...|..++.+ +...|++  
T Consensus        20 ~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~l~~~~~~~~~   97 (177)
T 2e2e_A           20 FASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGE-NAELYAALATVLYYQASQHMT   97 (177)
T ss_dssp             CC-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTCCC
T ss_pred             hhhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhcCCcch
Confidence            346789999999999998773 667889999999999999999999999999998765 88899999999 8899998  


Q ss_pred             HHHHHHHHHHHhcCCCCch-HHHHHHHHHHHhCCChhHHHHHHHHHHHcCCccCh
Q 000951          963 VDALKLKGTMELSGVKLDV-VSYNVLISGLCANGDVMPAFELYEEMKHKGLCPNS 1016 (1211)
Q Consensus       963 ~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~p~~ 1016 (1211)
                      ++|+..++.....  .|+. ..+..++.+|...|++++|...+++..+  ..|+.
T Consensus        98 ~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~p~~  148 (177)
T 2e2e_A           98 AQTRAMIDKALAL--DSNEITALMLLASDAFMQANYAQAIELWQKVMD--LNSPR  148 (177)
T ss_dssp             HHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TCCTT
T ss_pred             HHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHh--hCCCC
Confidence            9999999887766  7754 5889999999999999999999999877  34544

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=98.66  E-value=2.3e-07  Score=86.80  Aligned_cols=115  Identities=15%  Similarity=0.113  Sum_probs=54.4

Q ss_pred             hHHHHHHHHHhhcchhhHHHHHHHHHHcCCCCC-hhHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCchHHHHHHHHHH
Q 000951          843 TQDAIIMGLKRIAAFQESHFVLRGMAEKGLTPK-CTQYITLINGMCRVGNFQGAFKLKDEMEALGISSSDVAESAMVRGL  921 (1211)
Q Consensus       843 ~~~~l~~~~~~~g~~~eA~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~  921 (1211)
                      .+..++..+...|++++|+..|+++++  ..|+ ...+..++.++...|++++|...++++.+.. +.+..++..++.++
T Consensus        14 ~~~~~~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~   90 (131)
T 2vyi_A           14 RLKTEGNEQMKVENFEAAVHFYGKAIE--LNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGLAL   90 (131)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHH--cCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHHHH
Confidence            344444444444444444444444444  3332 2444444555555555555555555554431 33344444555555


Q ss_pred             HhcCCHHHHHHHHHHHHhCCcccCHHHHHHHHHHhhhhCC
Q 000951          922 AHCGKVEEAMLVLNRMLRMRLVPTIATFTTLIHKFCKEAK  961 (1211)
Q Consensus       922 ~~~g~~~eA~~~~~~~~~~~~~p~~~~~~~L~~~~~~~g~  961 (1211)
                      ...|++++|...|+++++..|. +...+..++.++...|+
T Consensus        91 ~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~  129 (131)
T 2vyi_A           91 SSLNKHVEAVAYYKKALELDPD-NETYKSNLKIAELKLRE  129 (131)
T ss_dssp             HHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHTT
T ss_pred             HHhCCHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHhc
Confidence            5555555555555555554433 44445555555544444

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=98.66  E-value=3.2e-07  Score=90.24  Aligned_cols=129  Identities=13%  Similarity=0.017  Sum_probs=107.8

Q ss_pred             hHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCcccCHHHHHHHHHHh
Q 000951          877 TQYITLINGMCRVGNFQGAFKLKDEMEALGISSSDVAESAMVRGLAHCGKVEEAMLVLNRMLRMRLVPTIATFTTLIHKF  956 (1211)
Q Consensus       877 ~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~p~~~~~~~L~~~~  956 (1211)
                      ..+..++..+...|++++|...|+++++.. +.+..++..++.++...|++++|++.++++++..+. +..+|..++.++
T Consensus        14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~a~~~   91 (166)
T 1a17_A           14 EELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK-YIKGYYRRAASN   91 (166)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHH
Confidence            457788899999999999999999998763 567888999999999999999999999999998765 888999999999


Q ss_pred             hhhCCHHHHHHHHHHHHhcCCCCchH-HH--HHHHHHHHhCCChhHHHHHHHHHHH
Q 000951          957 CKEAKFVDALKLKGTMELSGVKLDVV-SY--NVLISGLCANGDVMPAFELYEEMKH 1009 (1211)
Q Consensus       957 ~~~g~~~~A~~~~~~~~~~~~~p~~~-~~--~~l~~~~~~~g~~~~a~~~~~~~~~ 1009 (1211)
                      ...|++++|+..|+.....  .|+.. .+  ...+..+...|++++|.+.++...+
T Consensus        92 ~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~  145 (166)
T 1a17_A           92 MALGKFRAALRDYETVVKV--KPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS  145 (166)
T ss_dssp             HHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence            9999999999999877765  66443 55  3344457788999999998877643

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=98.64  E-value=2.3e-07  Score=86.49  Aligned_cols=93  Identities=10%  Similarity=0.122  Sum_probs=46.3

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhCCcccCHHHHHHHHHHhhhhCCHHHHHHHHHHHHhcCCCCch--------HHHH
Q 000951          914 ESAMVRGLAHCGKVEEAMLVLNRMLRMRLVPTIATFTTLIHKFCKEAKFVDALKLKGTMELSGVKLDV--------VSYN  985 (1211)
Q Consensus       914 ~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~p~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~p~~--------~~~~  985 (1211)
                      +..+|..+.+.|++++|++.|+++++.+|. ++.+|..++.+|...|++++|+..++.....  .|+.        .+|.
T Consensus        11 ~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~-~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~~a~~~~   87 (127)
T 4gcn_A           11 EKDLGNAAYKQKDFEKAHVHYDKAIELDPS-NITFYNNKAAVYFEEKKFAECVQFCEKAVEV--GRETRADYKLIAKAMS   87 (127)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HHHTTCCHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHhHHHHHHHhhhHHHHHHHHHHHHHh--CcccchhhHHHHHHHH
Confidence            344455555555555555555555554433 4555555555555555555555554433322  2211        1344


Q ss_pred             HHHHHHHhCCChhHHHHHHHHHHH
Q 000951          986 VLISGLCANGDVMPAFELYEEMKH 1009 (1211)
Q Consensus       986 ~l~~~~~~~g~~~~a~~~~~~~~~ 1009 (1211)
                      .++.+|...|++++|++.+++.++
T Consensus        88 ~lg~~~~~~~~~~~A~~~~~kal~  111 (127)
T 4gcn_A           88 RAGNAFQKQNDLSLAVQWFHRSLS  111 (127)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHh
Confidence            555555555555555555555443

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=98.62  E-value=3.8e-07  Score=85.04  Aligned_cols=93  Identities=13%  Similarity=0.021  Sum_probs=41.6

Q ss_pred             HHHHHHHHHhcCChhhHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCcccC------HHHHHHH
Q 000951          879 YITLINGMCRVGNFQGAFKLKDEMEALGISSSDVAESAMVRGLAHCGKVEEAMLVLNRMLRMRLVPT------IATFTTL  952 (1211)
Q Consensus       879 ~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~p~------~~~~~~L  952 (1211)
                      +..++..+.+.|++++|++.|+++++.. |.+..+|..++.+|...|++++|++.++++++.+|...      ..+|..+
T Consensus        11 ~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l   89 (127)
T 4gcn_A           11 EKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRA   89 (127)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHH
Confidence            3344444444444444444444444431 33344444444444444444444444444444332210      1244445


Q ss_pred             HHHhhhhCCHHHHHHHHHHH
Q 000951          953 IHKFCKEAKFVDALKLKGTM  972 (1211)
Q Consensus       953 ~~~~~~~g~~~~A~~~~~~~  972 (1211)
                      |.++...|++++|++.|+..
T Consensus        90 g~~~~~~~~~~~A~~~~~ka  109 (127)
T 4gcn_A           90 GNAFQKQNDLSLAVQWFHRS  109 (127)
T ss_dssp             HHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHH
Confidence            55555555555555554443

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=98.62  E-value=5.2e-07  Score=84.07  Aligned_cols=96  Identities=13%  Similarity=0.027  Sum_probs=55.2

Q ss_pred             HHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCcccCHHHHHHHHHHhh
Q 000951          878 QYITLINGMCRVGNFQGAFKLKDEMEALGISSSDVAESAMVRGLAHCGKVEEAMLVLNRMLRMRLVPTIATFTTLIHKFC  957 (1211)
Q Consensus       878 ~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~p~~~~~~~L~~~~~  957 (1211)
                      .+..++..+...|++++|+..|+++++.. +.+..++..++.++...|++++|+..|+++++.+|. +..+|..++.++.
T Consensus         6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~   83 (126)
T 3upv_A            6 EARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN-FVRAYIRKATAQI   83 (126)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHH
Confidence            34555555555566666666666555542 444555556666666666666666666666665544 5556666666666


Q ss_pred             hhCCHHHHHHHHHHHHhc
Q 000951          958 KEAKFVDALKLKGTMELS  975 (1211)
Q Consensus       958 ~~g~~~~A~~~~~~~~~~  975 (1211)
                      ..|++++|+..|+.....
T Consensus        84 ~~~~~~~A~~~~~~al~~  101 (126)
T 3upv_A           84 AVKEYASALETLDAARTK  101 (126)
T ss_dssp             HTTCHHHHHHHHHHHHHH
T ss_pred             HHhCHHHHHHHHHHHHHh
Confidence            666666666665544443

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=98.62  E-value=5.4e-07  Score=83.40  Aligned_cols=111  Identities=14%  Similarity=0.118  Sum_probs=50.2

Q ss_pred             hHHHHHHHHHhhcchhhHHHHHHHHHHcCCCCC-hhHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCchHHHHHHHHHH
Q 000951          843 TQDAIIMGLKRIAAFQESHFVLRGMAEKGLTPK-CTQYITLINGMCRVGNFQGAFKLKDEMEALGISSSDVAESAMVRGL  921 (1211)
Q Consensus       843 ~~~~l~~~~~~~g~~~eA~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~  921 (1211)
                      .|..++..+...|++++|+..|+++++  ..|+ ..++..++.++...|++++|...|+++.+.. +.+..++..++.++
T Consensus        11 ~~~~~~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~   87 (125)
T 1na0_A           11 AWYNLGNAYYKQGDYDEAIEYYQKALE--LDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAY   87 (125)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHH--HCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHH
Confidence            344444444444444444444444444  2232 2344444444444455555555444444331 23344444444455


Q ss_pred             HhcCCHHHHHHHHHHHHhCCcccCHHHHHHHHHHhh
Q 000951          922 AHCGKVEEAMLVLNRMLRMRLVPTIATFTTLIHKFC  957 (1211)
Q Consensus       922 ~~~g~~~eA~~~~~~~~~~~~~p~~~~~~~L~~~~~  957 (1211)
                      ...|++++|...|+++++..|. +...+..++.++.
T Consensus        88 ~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~  122 (125)
T 1na0_A           88 YKQGDYDEAIEYYQKALELDPN-NAEAKQNLGNAKQ  122 (125)
T ss_dssp             HHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred             HHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHH
Confidence            5555555555555555444333 4444444444443

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=98.61  E-value=5.3e-07  Score=84.70  Aligned_cols=115  Identities=10%  Similarity=-0.031  Sum_probs=91.2

Q ss_pred             hHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCcccCHHHHHHHHHHh
Q 000951          877 TQYITLINGMCRVGNFQGAFKLKDEMEALGISSSDVAESAMVRGLAHCGKVEEAMLVLNRMLRMRLVPTIATFTTLIHKF  956 (1211)
Q Consensus       877 ~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~p~~~~~~~L~~~~  956 (1211)
                      ..+..++..+...|++++|...|+++++.. +.+..++..++.++...|++++|++.++++++..+. +..+|..++.++
T Consensus        17 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~   94 (133)
T 2lni_A           17 LMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPT-FIKGYTRKAAAL   94 (133)
T ss_dssp             HHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-chHHHHHHHHHH
Confidence            678888888888888899988888888653 556778888888888888888888888888887655 778888888888


Q ss_pred             hhhCCHHHHHHHHHHHHhcCCCCch-HHHHHHHHHHHhCC
Q 000951          957 CKEAKFVDALKLKGTMELSGVKLDV-VSYNVLISGLCANG  995 (1211)
Q Consensus       957 ~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g  995 (1211)
                      ...|++++|+..|+.....  .|+. ..+..++.++...|
T Consensus        95 ~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~  132 (133)
T 2lni_A           95 EAMKDYTKAMDVYQKALDL--DSSCKEAADGYQRCMMAQY  132 (133)
T ss_dssp             HHTTCHHHHHHHHHHHHHH--CGGGTHHHHHHHHHHHHHT
T ss_pred             HHHhhHHHHHHHHHHHHHh--CCCchHHHHHHHHHHHHhc
Confidence            8888888888888776655  6644 46677777766554

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=98.61  E-value=2.7e-07  Score=85.99  Aligned_cols=112  Identities=7%  Similarity=-0.049  Sum_probs=83.6

Q ss_pred             hhhHHHHHHHHHhhcchhhHHHHHHHHHHcCCCCC-hhHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCchHHHHHHHH
Q 000951          841 TNTQDAIIMGLKRIAAFQESHFVLRGMAEKGLTPK-CTQYITLINGMCRVGNFQGAFKLKDEMEALGISSSDVAESAMVR  919 (1211)
Q Consensus       841 ~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~  919 (1211)
                      ...|..++..+.+.|++++|+..|+++++  ..|+ ...+..++.++...|++++|+..|+++++.. +.+..++..++.
T Consensus         4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~   80 (126)
T 3upv_A            4 AEEARLEGKEYFTKSDWPNAVKAYTEMIK--RAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKAT   80 (126)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHH
Confidence            34566777777788888888888888877  6674 4778888888888888888888888888763 556778888888


Q ss_pred             HHHhcCCHHHHHHHHHHHHhCCcc----c-CHHHHHHHHHH
Q 000951          920 GLAHCGKVEEAMLVLNRMLRMRLV----P-TIATFTTLIHK  955 (1211)
Q Consensus       920 ~~~~~g~~~eA~~~~~~~~~~~~~----p-~~~~~~~L~~~  955 (1211)
                      ++...|++++|+..|+++++.+|.    | +..++..+..+
T Consensus        81 ~~~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~  121 (126)
T 3upv_A           81 AQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKA  121 (126)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHH
T ss_pred             HHHHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHH
Confidence            888888888888888888887621    2 44555555443

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=98.61  E-value=5.8e-07  Score=84.03  Aligned_cols=118  Identities=14%  Similarity=0.041  Sum_probs=96.5

Q ss_pred             hhHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCcccCHHHHHHHHHH
Q 000951          876 CTQYITLINGMCRVGNFQGAFKLKDEMEALGISSSDVAESAMVRGLAHCGKVEEAMLVLNRMLRMRLVPTIATFTTLIHK  955 (1211)
Q Consensus       876 ~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~p~~~~~~~L~~~  955 (1211)
                      ...+..++..+...|++++|...|+++.+.. +.+..++..++.++...|++++|++.++++++..+. +..+|..++.+
T Consensus        12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~   89 (131)
T 2vyi_A           12 AERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPA-YSKAYGRMGLA   89 (131)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCcc-CHHHHHHHHHH
Confidence            3667888888889999999999999998763 556778888899999999999999999999887655 78888999999


Q ss_pred             hhhhCCHHHHHHHHHHHHhcCCCCc-hHHHHHHHHHHHhCCCh
Q 000951          956 FCKEAKFVDALKLKGTMELSGVKLD-VVSYNVLISGLCANGDV  997 (1211)
Q Consensus       956 ~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~  997 (1211)
                      +...|++++|...++.....  .|+ ...+..++.++...|++
T Consensus        90 ~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~~  130 (131)
T 2vyi_A           90 LSSLNKHVEAVAYYKKALEL--DPDNETYKSNLKIAELKLREA  130 (131)
T ss_dssp             HHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHTTC
T ss_pred             HHHhCCHHHHHHHHHHHHhc--CccchHHHHHHHHHHHHHhcC
Confidence            99999999999988876665  664 44777778788777765

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=98.60  E-value=4.3e-08  Score=100.13  Aligned_cols=147  Identities=8%  Similarity=-0.053  Sum_probs=76.2

Q ss_pred             HHHhcCcHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhcchhhHHHHHHHHHHcCCCCCh-----------------h
Q 000951          815 KCCEAGEMGKAFDLFNIMNMLGVVPDTNTQDAIIMGLKRIAAFQESHFVLRGMAEKGLTPKC-----------------T  877 (1211)
Q Consensus       815 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~g~~p~~-----------------~  877 (1211)
                      .....|.+++|.+.|+...+.. ......+..++..+...|++++|+..|+++++  ..|+.                 .
T Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~--~~~~~~~~~~~~~~~~~~~~~~~   89 (198)
T 2fbn_A           13 GRENLYFQGAKKSIYDYTDEEK-VQSAFDIKEEGNEFFKKNEINEAIVKYKEALD--FFIHTEEWDDQILLDKKKNIEIS   89 (198)
T ss_dssp             ---------CCCSGGGCCHHHH-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTTTCTTCCCHHHHHHHHHHHHH
T ss_pred             hhhhhhhccccCchhhCCHHHH-HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HHhcccccchhhHHHHHHHHHHH
Confidence            3344455555555443221100 01233455556666666666666666666665  33321                 4


Q ss_pred             HHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCcccCHHHHHHHHHHhh
Q 000951          878 QYITLINGMCRVGNFQGAFKLKDEMEALGISSSDVAESAMVRGLAHCGKVEEAMLVLNRMLRMRLVPTIATFTTLIHKFC  957 (1211)
Q Consensus       878 ~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~p~~~~~~~L~~~~~  957 (1211)
                      .+..++.++...|++++|+..++++++.. +.+..++..++.+|...|++++|++.|+++++..|. +..++..++.++.
T Consensus        90 ~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~  167 (198)
T 2fbn_A           90 CNLNLATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPN-NLDIRNSYELCVN  167 (198)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHH
Confidence            55566666666666666666666666542 445556666666666666666666666666665544 5556666666666


Q ss_pred             hhCCHHHHH
Q 000951          958 KEAKFVDAL  966 (1211)
Q Consensus       958 ~~g~~~~A~  966 (1211)
                      ..|+.+++.
T Consensus       168 ~~~~~~~~~  176 (198)
T 2fbn_A          168 KLKEARKKD  176 (198)
T ss_dssp             HHHHHHC--
T ss_pred             HHHHHHHHH
Confidence            665555554

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=98.59  E-value=3.5e-07  Score=87.40  Aligned_cols=98  Identities=12%  Similarity=-0.052  Sum_probs=88.1

Q ss_pred             CchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCcccCHHHHHHHHHHhhhhCCHHHHHHHHHHHHhcCCCCch-HHHHHH
Q 000951          909 SSDVAESAMVRGLAHCGKVEEAMLVLNRMLRMRLVPTIATFTTLIHKFCKEAKFVDALKLKGTMELSGVKLDV-VSYNVL  987 (1211)
Q Consensus       909 ~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~p~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l  987 (1211)
                      .+...+..++..+.+.|++++|+..|+++++.+|. ++..|..++.+|...|++++|+..|+.....  .|+. ..+..+
T Consensus        16 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l   92 (142)
T 2xcb_A           16 DTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHY-DARYFLGLGACRQSLGLYEQALQSYSYGALM--DINEPRFPFHA   92 (142)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--CCCCcHHHHHH
Confidence            34557788899999999999999999999998876 8999999999999999999999999987766  7854 588999


Q ss_pred             HHHHHhCCChhHHHHHHHHHHH
Q 000951          988 ISGLCANGDVMPAFELYEEMKH 1009 (1211)
Q Consensus       988 ~~~~~~~g~~~~a~~~~~~~~~ 1009 (1211)
                      +.+|...|++++|.+.++...+
T Consensus        93 g~~~~~~g~~~~A~~~~~~al~  114 (142)
T 2xcb_A           93 AECHLQLGDLDGAESGFYSARA  114 (142)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHH
Confidence            9999999999999999999876

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=98.59  E-value=6.1e-08  Score=99.01  Aligned_cols=155  Identities=7%  Similarity=-0.098  Sum_probs=107.0

Q ss_pred             HHHHHhhcchhhHHHHHHHHHHcCCCCC-hhHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCch---------------
Q 000951          848 IMGLKRIAAFQESHFVLRGMAEKGLTPK-CTQYITLINGMCRVGNFQGAFKLKDEMEALGISSSD---------------  911 (1211)
Q Consensus       848 ~~~~~~~g~~~eA~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~---------------  911 (1211)
                      +......|.+++|.+.++...+  ..+. ...+..++..+...|++++|+..|+++++.. +.+.               
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~   87 (198)
T 2fbn_A           11 SSGRENLYFQGAKKSIYDYTDE--EKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFF-IHTEEWDDQILLDKKKNIE   87 (198)
T ss_dssp             -----------CCCSGGGCCHH--HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-TTCTTCCCHHHHHHHHHHH
T ss_pred             hhhhhhhhhccccCchhhCCHH--HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-hcccccchhhHHHHHHHHH
Confidence            3344455667777666654333  2222 3567888999999999999999999998753 2233               


Q ss_pred             -HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCcccCHHHHHHHHHHhhhhCCHHHHHHHHHHHHhcCCCCchH-HHHHHHH
Q 000951          912 -VAESAMVRGLAHCGKVEEAMLVLNRMLRMRLVPTIATFTTLIHKFCKEAKFVDALKLKGTMELSGVKLDVV-SYNVLIS  989 (1211)
Q Consensus       912 -~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~p~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~  989 (1211)
                       .++..++.++...|++++|+..++++++..+. +..++..++.+|...|++++|+..|+.....  .|+.. .+..++.
T Consensus        88 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~  164 (198)
T 2fbn_A           88 ISCNLNLATCYNKNKDYPKAIDHASKVLKIDKN-NVKALYKLGVANMYFGFLEEAKENLYKAASL--NPNNLDIRNSYEL  164 (198)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--STTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHH
Confidence             67888999999999999999999999998765 8889999999999999999999998877666  77544 7777888


Q ss_pred             HHHhCCChhHHH-HHHHHHH
Q 000951          990 GLCANGDVMPAF-ELYEEMK 1008 (1211)
Q Consensus       990 ~~~~~g~~~~a~-~~~~~~~ 1008 (1211)
                      ++...++.+++. ..++.|.
T Consensus       165 ~~~~~~~~~~~~~~~~~~~f  184 (198)
T 2fbn_A          165 CVNKLKEARKKDKLTFGGMF  184 (198)
T ss_dssp             HHHHHHHHHC----------
T ss_pred             HHHHHHHHHHHHHHHHHHHh
Confidence            887777777766 4444443

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=98.58  E-value=3.5e-07  Score=93.66  Aligned_cols=26  Identities=15%  Similarity=-0.073  Sum_probs=12.3

Q ss_pred             HHHHHHHHHHhcCChhhHHHHHHHHH
Q 000951          878 QYITLINGMCRVGNFQGAFKLKDEME  903 (1211)
Q Consensus       878 ~~~~l~~~~~~~g~~~eA~~~~~~~~  903 (1211)
                      ++..++.++...|++++|...+++++
T Consensus        68 ~~~~l~~~~~~~g~~~~A~~~~~~al   93 (203)
T 3gw4_A           68 ALHQVGMVERMAGNWDAARRCFLEER   93 (203)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            34444444444444444444444443

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=98.58  E-value=4.9e-07  Score=92.49  Aligned_cols=154  Identities=8%  Similarity=-0.036  Sum_probs=108.3

Q ss_pred             hhcchhhHHHHHHHHHHcCCCC-C-hhHHHHHHHHHHhcCChhhHHHHHHHHHHc----CCC-CchHHHHHHHHHHHhcC
Q 000951          853 RIAAFQESHFVLRGMAEKGLTP-K-CTQYITLINGMCRVGNFQGAFKLKDEMEAL----GIS-SSDVAESAMVRGLAHCG  925 (1211)
Q Consensus       853 ~~g~~~eA~~~~~~~~~~g~~p-~-~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~g  925 (1211)
                      ..|++++|...++....   .| . ..++..++..+...|++++|...++++++.    +.+ ....++..++.++...|
T Consensus         4 ~~g~~~~A~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g   80 (203)
T 3gw4_A            4 EAHDYALAERQAQALLA---HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAG   80 (203)
T ss_dssp             ---CHHHHHHHHHHHHT---STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred             ccccHHHHHHHHHHhcC---ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcC
Confidence            45666666664333322   23 2 366777777777788888888888777641    111 23446788999999999


Q ss_pred             CHHHHHHHHHHHHhC---Cc-cc--CHHHHHHHHHHhhhhCCHHHHHHHHHHHHhcCC---CCc--hHHHHHHHHHHHhC
Q 000951          926 KVEEAMLVLNRMLRM---RL-VP--TIATFTTLIHKFCKEAKFVDALKLKGTMELSGV---KLD--VVSYNVLISGLCAN  994 (1211)
Q Consensus       926 ~~~eA~~~~~~~~~~---~~-~p--~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~---~p~--~~~~~~l~~~~~~~  994 (1211)
                      ++++|++.++++++.   .. .|  ...++..++.++...|++++|+..++......-   .|.  ..++..++.+|...
T Consensus        81 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~  160 (203)
T 3gw4_A           81 NWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQE  160 (203)
T ss_dssp             CHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHC
Confidence            999999999999885   21 11  356789999999999999999998876553211   111  12457888899999


Q ss_pred             CChhHHHHHHHHHHH
Q 000951          995 GDVMPAFELYEEMKH 1009 (1211)
Q Consensus       995 g~~~~a~~~~~~~~~ 1009 (1211)
                      |++++|.+.+++..+
T Consensus       161 g~~~~A~~~~~~al~  175 (203)
T 3gw4_A          161 KNLLEAQQHWLRARD  175 (203)
T ss_dssp             TCHHHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHH
Confidence            999999999988765

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=98.57  E-value=8.8e-07  Score=81.94  Aligned_cols=115  Identities=12%  Similarity=0.124  Sum_probs=90.7

Q ss_pred             hhHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCcccCHHHHHHHHHH
Q 000951          876 CTQYITLINGMCRVGNFQGAFKLKDEMEALGISSSDVAESAMVRGLAHCGKVEEAMLVLNRMLRMRLVPTIATFTTLIHK  955 (1211)
Q Consensus       876 ~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~p~~~~~~~L~~~  955 (1211)
                      ...+..++..+...|++++|.+.|+++.+.. +.+..++..++.++...|++++|+..++++++..+. +..+|..++.+
T Consensus         9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~   86 (125)
T 1na0_A            9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN-NAEAWYNLGNA   86 (125)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHH
Confidence            3667788888888999999999999988763 556778888888888899999999999988887654 77888888888


Q ss_pred             hhhhCCHHHHHHHHHHHHhcCCCCch-HHHHHHHHHHHhC
Q 000951          956 FCKEAKFVDALKLKGTMELSGVKLDV-VSYNVLISGLCAN  994 (1211)
Q Consensus       956 ~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~  994 (1211)
                      +...|++++|...++.....  .|+. ..+..++.++...
T Consensus        87 ~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~  124 (125)
T 1na0_A           87 YYKQGDYDEAIEYYQKALEL--DPNNAEAKQNLGNAKQKQ  124 (125)
T ss_dssp             HHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHH
T ss_pred             HHHhcCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHhc
Confidence            98899999998888876655  5644 3666666665543

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=98.52  E-value=1.3e-06  Score=79.79  Aligned_cols=107  Identities=13%  Similarity=0.061  Sum_probs=49.7

Q ss_pred             hHHHHHHHHHhhcchhhHHHHHHHHHHcCCCCC-hhHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCchHHHHHHHHHH
Q 000951          843 TQDAIIMGLKRIAAFQESHFVLRGMAEKGLTPK-CTQYITLINGMCRVGNFQGAFKLKDEMEALGISSSDVAESAMVRGL  921 (1211)
Q Consensus       843 ~~~~l~~~~~~~g~~~eA~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~  921 (1211)
                      .+..++..+...|++++|+..|+++++  ..|+ ...+..++.++...|++++|...++++.+.. +.+...+..++.++
T Consensus         6 ~~~~~~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~   82 (118)
T 1elw_A            6 ELKEKGNKALSVGNIDDALQCYSEAIK--LDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAAL   82 (118)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcccHHHHHHHHHHHHH--HCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHHHH
Confidence            344444444444555555555554444  3332 2444444445555555555555555554431 23344444455555


Q ss_pred             HhcCCHHHHHHHHHHHHhCCcccCHHHHHHHH
Q 000951          922 AHCGKVEEAMLVLNRMLRMRLVPTIATFTTLI  953 (1211)
Q Consensus       922 ~~~g~~~eA~~~~~~~~~~~~~p~~~~~~~L~  953 (1211)
                      ...|++++|.+.|+++++.+|. +...+..++
T Consensus        83 ~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~  113 (118)
T 1elw_A           83 EFLNRFEEAKRTYEEGLKHEAN-NPQLKEGLQ  113 (118)
T ss_dssp             HHTTCHHHHHHHHHHHHTTCTT-CHHHHHHHH
T ss_pred             HHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHH
Confidence            5555555555555555544433 344444333

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=98.52  E-value=5.3e-07  Score=83.15  Aligned_cols=99  Identities=17%  Similarity=0.029  Sum_probs=65.5

Q ss_pred             HHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCcccCHHHHHHHHHHhh
Q 000951          878 QYITLINGMCRVGNFQGAFKLKDEMEALGISSSDVAESAMVRGLAHCGKVEEAMLVLNRMLRMRLVPTIATFTTLIHKFC  957 (1211)
Q Consensus       878 ~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~p~~~~~~~L~~~~~  957 (1211)
                      .+..++..+...|++++|+..|+++++.. +.+..+|..++.++...|++++|+..|+++++.+|. +..+|..|+.+|.
T Consensus        19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~~~~~la~~~~   96 (121)
T 1hxi_A           19 NPMEEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAVSHT   96 (121)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHH
Confidence            35556666667777777777777776652 456666777777777777777777777777776655 6667777777777


Q ss_pred             hhCCHHHHHHHHHHHHhcCCCCc
Q 000951          958 KEAKFVDALKLKGTMELSGVKLD  980 (1211)
Q Consensus       958 ~~g~~~~A~~~~~~~~~~~~~p~  980 (1211)
                      ..|++++|+..++.....  .|+
T Consensus        97 ~~g~~~~A~~~~~~al~~--~P~  117 (121)
T 1hxi_A           97 NEHNANAALASLRAWLLS--QPQ  117 (121)
T ss_dssp             HHHHHHHHHHHHHHHHC------
T ss_pred             HcCCHHHHHHHHHHHHHh--CcC
Confidence            777777777776655433  553

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=98.51  E-value=5.2e-07  Score=88.68  Aligned_cols=96  Identities=6%  Similarity=-0.061  Sum_probs=44.5

Q ss_pred             hHHHHHHHHHhhcchhhHHHHHHHHHHcCCCCC-hhHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCchHHHHHHHHHH
Q 000951          843 TQDAIIMGLKRIAAFQESHFVLRGMAEKGLTPK-CTQYITLINGMCRVGNFQGAFKLKDEMEALGISSSDVAESAMVRGL  921 (1211)
Q Consensus       843 ~~~~l~~~~~~~g~~~eA~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~  921 (1211)
                      .|..++..|.+.|++++|+..|+++++  +.|+ ...|..++.++...|++++|+..|+++++.. +.+..+|..++.+|
T Consensus        13 ~~~~~g~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~   89 (164)
T 3sz7_A           13 KLKSEGNAAMARKEYSKAIDLYTQALS--IAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLGLAR   89 (164)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence            344444444444444444444444444  3342 2444444444444444444444444444432 33344444444444


Q ss_pred             HhcCCHHHHHHHHHHHHhCC
Q 000951          922 AHCGKVEEAMLVLNRMLRMR  941 (1211)
Q Consensus       922 ~~~g~~~eA~~~~~~~~~~~  941 (1211)
                      ...|++++|+..|+++++..
T Consensus        90 ~~~g~~~~A~~~~~~al~~~  109 (164)
T 3sz7_A           90 FDMADYKGAKEAYEKGIEAE  109 (164)
T ss_dssp             HHTTCHHHHHHHHHHHHHHH
T ss_pred             HHccCHHHHHHHHHHHHHhC
Confidence            44555555555555444443

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=98.50  E-value=2.4e-06  Score=101.71  Aligned_cols=171  Identities=8%  Similarity=-0.034  Sum_probs=137.3

Q ss_pred             HHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhcc----------hhhHHHHHHHHHHcCCCCCh-hHHHHHHHHHHhcC
Q 000951          822 MGKAFDLFNIMNMLGVVPDTNTQDAIIMGLKRIAA----------FQESHFVLRGMAEKGLTPKC-TQYITLINGMCRVG  890 (1211)
Q Consensus       822 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~eA~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g  890 (1211)
                      .++|++.++++++.+ +.+...|+.-..++...|+          +++++..++++++  .+|+. .+|.....++.+.|
T Consensus        45 ~eeal~~~~~~l~~n-P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~--~~pK~y~aW~hR~w~l~~l~  121 (567)
T 1dce_A           45 DESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLR--VNPKSYGTWHHRCWLLSRLP  121 (567)
T ss_dssp             SHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHTCS
T ss_pred             CHHHHHHHHHHHHHC-chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcc
Confidence            346678888777643 2236667777777777777          8899999999998  77864 78888888888888


Q ss_pred             --ChhhHHHHHHHHHHcCCCCchHHHHHHHHHHHhcC-CHHHHHHHHHHHHhCCcccCHHHHHHHHHHhhhh--------
Q 000951          891 --NFQGAFKLKDEMEALGISSSDVAESAMVRGLAHCG-KVEEAMLVLNRMLRMRLVPTIATFTTLIHKFCKE--------  959 (1211)
Q Consensus       891 --~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~eA~~~~~~~~~~~~~p~~~~~~~L~~~~~~~--------  959 (1211)
                        +++++++.++++++.. +.+..+|+..+.++.+.| .++++++.++++++.+|. |..+|+..+.++.+.        
T Consensus       122 ~~~~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~-n~saW~~r~~ll~~l~~~~~~~~  199 (567)
T 1dce_A          122 EPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQPDSGP  199 (567)
T ss_dssp             SCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC-CHHHHHHHHHHHHHHSCCCCSSS
T ss_pred             cccHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCC-CccHHHHHHHHHHhhcccccccc
Confidence              7799999999999874 667888998898999999 899999999999998877 999999999988774        


Q ss_pred             ------CCHHHHHHHHHHHHhcCCCC-chHHHHHHHHHHHhCCChhH
Q 000951          960 ------AKFVDALKLKGTMELSGVKL-DVVSYNVLISGLCANGDVMP  999 (1211)
Q Consensus       960 ------g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~  999 (1211)
                            +.+++|++.+......  .| |..+|+.+...+...++.++
T Consensus       200 ~~~~~~~~~~eel~~~~~ai~~--~P~~~saW~y~~~ll~~~~~~~~  244 (567)
T 1dce_A          200 QGRLPENVLLKELELVQNAFFT--DPNDQSAWFYHRWLLGRAEPHDV  244 (567)
T ss_dssp             CCSSCHHHHHHHHHHHHHHHHH--CSSCSHHHHHHHHHHSCCCCCSC
T ss_pred             cccccHHHHHHHHHHHHHHHhh--CCCCccHHHHHHHHHhcCCCccc
Confidence                  5678898887766555  78 45589999998888887554

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=98.49  E-value=1.2e-06  Score=85.98  Aligned_cols=102  Identities=10%  Similarity=-0.044  Sum_probs=79.5

Q ss_pred             hHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCcccCHHHHHHHHHHh
Q 000951          877 TQYITLINGMCRVGNFQGAFKLKDEMEALGISSSDVAESAMVRGLAHCGKVEEAMLVLNRMLRMRLVPTIATFTTLIHKF  956 (1211)
Q Consensus       877 ~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~p~~~~~~~L~~~~  956 (1211)
                      ..+..++..+...|++++|+..|+++++.. +.+..+|..++.+|...|++++|+..|+++++.++. +..+|..++.+|
T Consensus        12 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~   89 (164)
T 3sz7_A           12 DKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPK-YSKAWSRLGLAR   89 (164)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHH
Confidence            567778888888888888888888887763 556777888888888888888888888888887765 777888888888


Q ss_pred             hhhCCHHHHHHHHHHHHhcCCCCchH
Q 000951          957 CKEAKFVDALKLKGTMELSGVKLDVV  982 (1211)
Q Consensus       957 ~~~g~~~~A~~~~~~~~~~~~~p~~~  982 (1211)
                      ...|++++|+..|+.....  .|+..
T Consensus        90 ~~~g~~~~A~~~~~~al~~--~p~~~  113 (164)
T 3sz7_A           90 FDMADYKGAKEAYEKGIEA--EGNGG  113 (164)
T ss_dssp             HHTTCHHHHHHHHHHHHHH--HSSSC
T ss_pred             HHccCHHHHHHHHHHHHHh--CCCch
Confidence            8888888888887766655  66544

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.48  E-value=1.9e-06  Score=82.64  Aligned_cols=108  Identities=10%  Similarity=0.011  Sum_probs=49.4

Q ss_pred             hhHHHHHHHHHhhcchhhHHHHHHHHHHcCCCCC----hhHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCchHHHHHH
Q 000951          842 NTQDAIIMGLKRIAAFQESHFVLRGMAEKGLTPK----CTQYITLINGMCRVGNFQGAFKLKDEMEALGISSSDVAESAM  917 (1211)
Q Consensus       842 ~~~~~l~~~~~~~g~~~eA~~~~~~~~~~g~~p~----~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~l  917 (1211)
                      ..+..++..+...|++++|+..|+++++  ..|+    ...+..++.++...|++++|+..++++++.. +.+..++..+
T Consensus        29 ~~~~~~a~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~  105 (148)
T 2dba_A           29 EQLRKEGNELFKCGDYGGALAAYTQALG--LDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKALYRR  105 (148)
T ss_dssp             HHHHHHHHHHHTTTCHHHHHHHHHHHHT--SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHH--HcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHHHHH
Confidence            3444444444444555555555554444  3343    2344444444445555555555555444431 2234444444


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhCCcccCHHHHHHHH
Q 000951          918 VRGLAHCGKVEEAMLVLNRMLRMRLVPTIATFTTLI  953 (1211)
Q Consensus       918 ~~~~~~~g~~~eA~~~~~~~~~~~~~p~~~~~~~L~  953 (1211)
                      +.++...|++++|...|+++++..|. +..++..+.
T Consensus       106 a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~  140 (148)
T 2dba_A          106 SQALEKLGRLDQAVLDLQRCVSLEPK-NKVFQEALR  140 (148)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHCSS-CHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHHH
Confidence            44555555555555555555444333 333443333

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=98.48  E-value=1.4e-07  Score=110.12  Aligned_cols=147  Identities=7%  Similarity=-0.119  Sum_probs=99.8

Q ss_pred             cchhhHHHHHHHHHHcCCCCCh-hHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCc---------------hHHHHHHH
Q 000951          855 AAFQESHFVLRGMAEKGLTPKC-TQYITLINGMCRVGNFQGAFKLKDEMEALGISSS---------------DVAESAMV  918 (1211)
Q Consensus       855 g~~~eA~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~---------------~~~~~~l~  918 (1211)
                      +++++|+..|+...+  ..|+. ..+..++..+.+.|++++|+..|+++++.. +.+               ..+|..++
T Consensus       248 ~~~~~A~~~~~~~~~--~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~-p~~~~~~~~~~~~~~~~~~~~~~nla  324 (457)
T 1kt0_A          248 KSFEKAKESWEMDTK--EKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWL-EMEYGLSEKESKASESFLLAAFLNLA  324 (457)
T ss_dssp             EEEECCCCGGGSCHH--HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-TTCCSCCHHHHHHHHHHHHHHHHHHH
T ss_pred             hhcccCcchhhcCHH--HHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh-cccccCChHHHHHHHHHHHHHHHHHH
Confidence            445555555555444  33432 556667777777777777777777776542 222               46777888


Q ss_pred             HHHHhcCCHHHHHHHHHHHHhCCcccCHHHHHHHHHHhhhhCCHHHHHHHHHHHHhcCCCCchH-HHHHHHHHHHhCCCh
Q 000951          919 RGLAHCGKVEEAMLVLNRMLRMRLVPTIATFTTLIHKFCKEAKFVDALKLKGTMELSGVKLDVV-SYNVLISGLCANGDV  997 (1211)
Q Consensus       919 ~~~~~~g~~~eA~~~~~~~~~~~~~p~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~  997 (1211)
                      .+|.+.|++++|+..|+++++.+|. +..+|..++.+|...|++++|+..|+.....  .|+.. .+..++.++...|++
T Consensus       325 ~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l--~P~~~~a~~~l~~~~~~~~~~  401 (457)
T 1kt0_A          325 MCYLKLREYTKAVECCDKALGLDSA-NEKGLYRRGEAQLLMNEFESAKGDFEKVLEV--NPQNKAARLQISMCQKKAKEH  401 (457)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--C----CHHHHHHHHHHHHHHH
T ss_pred             HHHHHhcCHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHH
Confidence            8888888888888888888887765 7888888888888888888888887766554  77554 777777788877777


Q ss_pred             hHHHH-HHHHH
Q 000951          998 MPAFE-LYEEM 1007 (1211)
Q Consensus       998 ~~a~~-~~~~~ 1007 (1211)
                      +++.+ .++.|
T Consensus       402 ~~a~~~~~~~~  412 (457)
T 1kt0_A          402 NERDRRIYANM  412 (457)
T ss_dssp             HHHHHHHHHHC
T ss_pred             HHHHHHHHHHH
Confidence            77653 34444

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=98.48  E-value=3e-07  Score=86.84  Aligned_cols=94  Identities=14%  Similarity=0.088  Sum_probs=44.0

Q ss_pred             HHHHHHHHHhhcchhhHHHHHHHHHHcCCCCCh-------------hHHHHHHHHHHhcCChhhHHHHHHHHHHc-----
Q 000951          844 QDAIIMGLKRIAAFQESHFVLRGMAEKGLTPKC-------------TQYITLINGMCRVGNFQGAFKLKDEMEAL-----  905 (1211)
Q Consensus       844 ~~~l~~~~~~~g~~~eA~~~~~~~~~~g~~p~~-------------~~~~~l~~~~~~~g~~~eA~~~~~~~~~~-----  905 (1211)
                      +...+..+.+.|++++|+..|+++++  +.|+.             ..|..++.++...|++++|+..|+++++.     
T Consensus        14 ~~~~G~~l~~~g~~eeAi~~Y~kAL~--l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~   91 (159)
T 2hr2_A           14 ALSDAQRQLVAGEYDEAAANCRRAME--ISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRG   91 (159)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHH--HHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHh--hCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccc
Confidence            34445555555666666666666555  44431             14444444444555555555544444432     


Q ss_pred             --CCCCchHHH----HHHHHHHHhcCCHHHHHHHHHHHHhC
Q 000951          906 --GISSSDVAE----SAMVRGLAHCGKVEEAMLVLNRMLRM  940 (1211)
Q Consensus       906 --~~~~~~~~~----~~l~~~~~~~g~~~eA~~~~~~~~~~  940 (1211)
                        . +.+..+|    +..+.++...|++++|+..|+++++.
T Consensus        92 e~~-pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel  131 (159)
T 2hr2_A           92 ELN-QDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM  131 (159)
T ss_dssp             CTT-STHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             cCC-CchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhc
Confidence              1 2223333    44444444444444444444444443

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=98.46  E-value=2.5e-06  Score=77.90  Aligned_cols=109  Identities=14%  Similarity=0.003  Sum_probs=77.2

Q ss_pred             hHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCcccCHHHHHHHHHHh
Q 000951          877 TQYITLINGMCRVGNFQGAFKLKDEMEALGISSSDVAESAMVRGLAHCGKVEEAMLVLNRMLRMRLVPTIATFTTLIHKF  956 (1211)
Q Consensus       877 ~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~p~~~~~~~L~~~~  956 (1211)
                      ..+..++..+...|++++|...|+++.+.. +.+..++..++.++...|++++|...++++++..|. +..+|..++.++
T Consensus         5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~   82 (118)
T 1elw_A            5 NELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD-WGKGYSRKAAAL   82 (118)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcc-cHHHHHHHHHHH
Confidence            456677777777888888888888877653 456667777777777788888888888887776654 677777778888


Q ss_pred             hhhCCHHHHHHHHHHHHhcCCCCchH-HHHHHHH
Q 000951          957 CKEAKFVDALKLKGTMELSGVKLDVV-SYNVLIS  989 (1211)
Q Consensus       957 ~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~  989 (1211)
                      ...|++++|...++.....  .|+.. .+..++.
T Consensus        83 ~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~  114 (118)
T 1elw_A           83 EFLNRFEEAKRTYEEGLKH--EANNPQLKEGLQN  114 (118)
T ss_dssp             HHTTCHHHHHHHHHHHHTT--CTTCHHHHHHHHH
T ss_pred             HHHhhHHHHHHHHHHHHHc--CCCCHHHHHHHHH
Confidence            8888888888777665544  56443 4444443

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=98.44  E-value=8.4e-07  Score=83.79  Aligned_cols=97  Identities=8%  Similarity=-0.006  Sum_probs=66.5

Q ss_pred             HHHHHHHHHHhcCChhhHHHHHHHHHHcCCCC------c-----hHHHHHHHHHHHhcCCHHHHHHHHHHHHhC------
Q 000951          878 QYITLINGMCRVGNFQGAFKLKDEMEALGISS------S-----DVAESAMVRGLAHCGKVEEAMLVLNRMLRM------  940 (1211)
Q Consensus       878 ~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~------~-----~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~------  940 (1211)
                      .+...+..+...|++++|+..|+++++.....      +     ..+|..++.++.+.|++++|+..|+++++.      
T Consensus        13 ~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e   92 (159)
T 2hr2_A           13 LALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGE   92 (159)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcccc
Confidence            45677778888888888888888888653220      1     226777777777777777777777777776      


Q ss_pred             -CcccCHHHH----HHHHHHhhhhCCHHHHHHHHHHHHhc
Q 000951          941 -RLVPTIATF----TTLIHKFCKEAKFVDALKLKGTMELS  975 (1211)
Q Consensus       941 -~~~p~~~~~----~~L~~~~~~~g~~~~A~~~~~~~~~~  975 (1211)
                       +|. +..+|    ..+|.++...|++++|+..|+...+.
T Consensus        93 ~~pd-~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel  131 (159)
T 2hr2_A           93 LNQD-EGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM  131 (159)
T ss_dssp             TTST-HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             CCCc-hHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhc
Confidence             544 55666    67777777777777777766655443

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=98.43  E-value=2.7e-06  Score=101.28  Aligned_cols=170  Identities=9%  Similarity=-0.005  Sum_probs=144.4

Q ss_pred             chhhHHHHHHHHHHcCCCCCh-hHHHHHHHHHHhcCC----------hhhHHHHHHHHHHcCCCCchHHHHHHHHHHHhc
Q 000951          856 AFQESHFVLRGMAEKGLTPKC-TQYITLINGMCRVGN----------FQGAFKLKDEMEALGISSSDVAESAMVRGLAHC  924 (1211)
Q Consensus       856 ~~~eA~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~----------~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  924 (1211)
                      ..++|+..++++++  ++|+. .+|.....++...|+          ++++++.++++++. .+.+..+|+.-+.++.+.
T Consensus        44 ~~eeal~~~~~~l~--~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~-~pK~y~aW~hR~w~l~~l  120 (567)
T 1dce_A           44 LDESVLELTSQILG--ANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV-NPKSYGTWHHRCWLLSRL  120 (567)
T ss_dssp             CSHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC
T ss_pred             CCHHHHHHHHHHHH--HCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHc
Confidence            44688999999999  89975 788888888888888          99999999999987 488899999999999999


Q ss_pred             C--CHHHHHHHHHHHHhCCcccCHHHHHHHHHHhhhhC-CHHHHHHHHHHHHhcCCCC-chHHHHHHHHHHHhC------
Q 000951          925 G--KVEEAMLVLNRMLRMRLVPTIATFTTLIHKFCKEA-KFVDALKLKGTMELSGVKL-DVVSYNVLISGLCAN------  994 (1211)
Q Consensus       925 g--~~~eA~~~~~~~~~~~~~p~~~~~~~L~~~~~~~g-~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~------  994 (1211)
                      |  ++++|+++++++++.++. |..+|+..+.++.+.| .++++++.+..+.  ...| |..+|+..+.++...      
T Consensus       121 ~~~~~~~el~~~~k~l~~d~~-N~~aW~~R~~~l~~l~~~~~~el~~~~~~I--~~~p~n~saW~~r~~ll~~l~~~~~~  197 (567)
T 1dce_A          121 PEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLI--TRNFSNYSSWHYRSCLLPQLHPQPDS  197 (567)
T ss_dssp             SSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTT--TTTCCCHHHHHHHHHHHHHHSCCCCS
T ss_pred             ccccHHHHHHHHHHHHhhccc-cccHHHHHHHHHHHcCCChHHHHHHHHHHH--HHCCCCccHHHHHHHHHHhhcccccc
Confidence            9  679999999999999887 9999999999999999 8999999976554  4488 455898888876653      


Q ss_pred             --------CChhHHHHHHHHHHHcCCccCh-hhHHHHHHHHHhcccch
Q 000951          995 --------GDVMPAFELYEEMKHKGLCPNS-TTYSVLIDAISKKENNL 1033 (1211)
Q Consensus       995 --------g~~~~a~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~~~~~ 1033 (1211)
                              +.++++++.+++..+  +.|+. ..|......+...++.+
T Consensus       198 ~~~~~~~~~~~~eel~~~~~ai~--~~P~~~saW~y~~~ll~~~~~~~  243 (567)
T 1dce_A          198 GPQGRLPENVLLKELELVQNAFF--TDPNDQSAWFYHRWLLGRAEPHD  243 (567)
T ss_dssp             SSCCSSCHHHHHHHHHHHHHHHH--HCSSCSHHHHHHHHHHSCCCCCS
T ss_pred             cccccccHHHHHHHHHHHHHHHh--hCCCCccHHHHHHHHHhcCCCcc
Confidence                    567889999988876  57877 89999988887776633

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=98.42  E-value=2e-06  Score=81.26  Aligned_cols=96  Identities=9%  Similarity=-0.072  Sum_probs=56.3

Q ss_pred             hHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCcccCHHHHHHHHHHh
Q 000951          877 TQYITLINGMCRVGNFQGAFKLKDEMEALGISSSDVAESAMVRGLAHCGKVEEAMLVLNRMLRMRLVPTIATFTTLIHKF  956 (1211)
Q Consensus       877 ~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~p~~~~~~~L~~~~  956 (1211)
                      ..+..++..+...|++++|+..|+++++.. +.+..++..++.++...|++++|+..++++++.+|. +..+|..++.+|
T Consensus        10 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~   87 (137)
T 3q49_B           10 QELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFLGQCQ   87 (137)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCch-hHHHHHHHHHHH
Confidence            455555555666666666666666655542 344555566666666666666666666666665544 555666666666


Q ss_pred             hhhCCHHHHHHHHHHHHh
Q 000951          957 CKEAKFVDALKLKGTMEL  974 (1211)
Q Consensus       957 ~~~g~~~~A~~~~~~~~~  974 (1211)
                      ...|++++|+..|+....
T Consensus        88 ~~~~~~~~A~~~~~~a~~  105 (137)
T 3q49_B           88 LEMESYDEAIANLQRAYS  105 (137)
T ss_dssp             HHTTCHHHHHHHHHHHHH
T ss_pred             HHHhhHHHHHHHHHHHHH
Confidence            666666666666554443

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=98.41  E-value=1.4e-06  Score=85.47  Aligned_cols=66  Identities=17%  Similarity=0.138  Sum_probs=36.4

Q ss_pred             hHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCcc
Q 000951          877 TQYITLINGMCRVGNFQGAFKLKDEMEALGISSSDVAESAMVRGLAHCGKVEEAMLVLNRMLRMRLV  943 (1211)
Q Consensus       877 ~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~  943 (1211)
                      ..|..++.++.+.|++++|+..++++++.. +.+..+|..++.+|...|++++|+..|+++++.+|.
T Consensus        64 ~~~~nla~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~  129 (162)
T 3rkv_A           64 PLYANMSQCYLNIGDLHEAEETSSEVLKRE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPA  129 (162)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGG
T ss_pred             HHHHHHHHHHHhcCcHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCC
Confidence            445555555555555555555555555542 344555555555555555555555555555555433

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=98.40  E-value=2e-06  Score=81.31  Aligned_cols=102  Identities=13%  Similarity=-0.003  Sum_probs=78.6

Q ss_pred             CChhhHHHHHHHHHhhcchhhHHHHHHHHHHcCCCCC-hhHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCchHHHHHH
Q 000951          839 PDTNTQDAIIMGLKRIAAFQESHFVLRGMAEKGLTPK-CTQYITLINGMCRVGNFQGAFKLKDEMEALGISSSDVAESAM  917 (1211)
Q Consensus       839 ~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~l  917 (1211)
                      .+...|..++..+...|++++|+..|+++++  ..|+ ...+..++.++...|++++|...|+++++.. +.+..++..+
T Consensus         7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l   83 (137)
T 3q49_B            7 PSAQELKEQGNRLFVGRKYPEAAACYGRAIT--RNPLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFL   83 (137)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHh--hCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHH
Confidence            3466777777777778888888888888777  5665 4677888888888888888888888887763 5567778888


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhCCcc
Q 000951          918 VRGLAHCGKVEEAMLVLNRMLRMRLV  943 (1211)
Q Consensus       918 ~~~~~~~g~~~eA~~~~~~~~~~~~~  943 (1211)
                      +.++...|++++|+..|+++++..|.
T Consensus        84 ~~~~~~~~~~~~A~~~~~~a~~~~p~  109 (137)
T 3q49_B           84 GQCQLEMESYDEAIANLQRAYSLAKE  109 (137)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhHHHHHHHHHHHHHHChh
Confidence            88888888888888888888876543

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=98.39  E-value=1.3e-06  Score=101.99  Aligned_cols=126  Identities=9%  Similarity=0.003  Sum_probs=95.8

Q ss_pred             hHHHHHHHHHhhcchhhHHHHHHHHHHcCCCCC----------------hhHHHHHHHHHHhcCChhhHHHHHHHHHHcC
Q 000951          843 TQDAIIMGLKRIAAFQESHFVLRGMAEKGLTPK----------------CTQYITLINGMCRVGNFQGAFKLKDEMEALG  906 (1211)
Q Consensus       843 ~~~~l~~~~~~~g~~~eA~~~~~~~~~~g~~p~----------------~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~  906 (1211)
                      .|..++..|.+.|++++|+..|+++++  +.|+                ..+|..++.++.+.|++++|+..|+++++..
T Consensus       270 ~~~~~G~~~~~~g~~~~A~~~y~~Al~--~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~  347 (457)
T 1kt0_A          270 IVKEKGTVYFKGGKYMQAVIQYGKIVS--WLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD  347 (457)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHH--HHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHH--HhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence            444455555555555555555555554  3332                3678899999999999999999999999874


Q ss_pred             CCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCcccCHHHHHHHHHHhhhhCCHHHHHH-HHHHH
Q 000951          907 ISSSDVAESAMVRGLAHCGKVEEAMLVLNRMLRMRLVPTIATFTTLIHKFCKEAKFVDALK-LKGTM  972 (1211)
Q Consensus       907 ~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~p~~~~~~~L~~~~~~~g~~~~A~~-~~~~~  972 (1211)
                       +.+..++..++.+|...|++++|+..|+++++.+|. +..++..++.++...|++++|.. .++.|
T Consensus       348 -p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~-~~~a~~~l~~~~~~~~~~~~a~~~~~~~~  412 (457)
T 1kt0_A          348 -SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQ-NKAARLQISMCQKKAKEHNERDRRIYANM  412 (457)
T ss_dssp             -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             -CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             667889999999999999999999999999998866 88899999999999999998876 34433

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=98.39  E-value=2e-06  Score=80.32  Aligned_cols=94  Identities=14%  Similarity=0.151  Sum_probs=45.2

Q ss_pred             HHHHHHHHHhcCChhhHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCcccC-------HHHHHH
Q 000951          879 YITLINGMCRVGNFQGAFKLKDEMEALGISSSDVAESAMVRGLAHCGKVEEAMLVLNRMLRMRLVPT-------IATFTT  951 (1211)
Q Consensus       879 ~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~p~-------~~~~~~  951 (1211)
                      +..++..+...|++++|...|+++++.. +.+..++..++.++...|++++|+..++++++..+. +       ..+|..
T Consensus         7 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~   84 (131)
T 1elr_A            7 EKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRE-NREDYRQIAKAYAR   84 (131)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH-STTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccc-cchhHHHHHHHHHH
Confidence            4444444444555555555555544432 333444444555555555555555555555544322 2       444555


Q ss_pred             HHHHhhhhCCHHHHHHHHHHHHh
Q 000951          952 LIHKFCKEAKFVDALKLKGTMEL  974 (1211)
Q Consensus       952 L~~~~~~~g~~~~A~~~~~~~~~  974 (1211)
                      ++.++...|++++|...|+....
T Consensus        85 la~~~~~~~~~~~A~~~~~~~~~  107 (131)
T 1elr_A           85 IGNSYFKEEKYKDAIHFYNKSLA  107 (131)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHhccHHHHHHHHHHHHH
Confidence            55555555555555555544443

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=98.38  E-value=1.3e-06  Score=80.54  Aligned_cols=99  Identities=10%  Similarity=0.050  Sum_probs=76.6

Q ss_pred             hhHHHHHHHHHhhcchhhHHHHHHHHHHcCCCCC-hhHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCchHHHHHHHHH
Q 000951          842 NTQDAIIMGLKRIAAFQESHFVLRGMAEKGLTPK-CTQYITLINGMCRVGNFQGAFKLKDEMEALGISSSDVAESAMVRG  920 (1211)
Q Consensus       842 ~~~~~l~~~~~~~g~~~eA~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~  920 (1211)
                      ..+..++..+.+.|++++|+..|+++++  ..|+ ...+..++.++...|++++|+..|+++++.. +.+..++..++.+
T Consensus        18 ~~~~~~g~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~la~~   94 (121)
T 1hxi_A           18 ENPMEEGLSMLKLANLAEAALAFEAVCQ--KEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVS   94 (121)
T ss_dssp             SCHHHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHcCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence            3466677778888888888888888887  7775 4778888888888888888888888888763 5567788888888


Q ss_pred             HHhcCCHHHHHHHHHHHHhCCcc
Q 000951          921 LAHCGKVEEAMLVLNRMLRMRLV  943 (1211)
Q Consensus       921 ~~~~g~~~eA~~~~~~~~~~~~~  943 (1211)
                      +...|++++|+..|+++++.+|.
T Consensus        95 ~~~~g~~~~A~~~~~~al~~~P~  117 (121)
T 1hxi_A           95 HTNEHNANAALASLRAWLLSQPQ  117 (121)
T ss_dssp             HHHHHHHHHHHHHHHHHHC----
T ss_pred             HHHcCCHHHHHHHHHHHHHhCcC
Confidence            88888888888888888876643

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=98.37  E-value=4.4e-06  Score=77.91  Aligned_cols=92  Identities=14%  Similarity=0.055  Sum_probs=40.0

Q ss_pred             HHHHHHhhcchhhHHHHHHHHHHcCCCCCh----hHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCc---hHHHHHHHH
Q 000951          847 IIMGLKRIAAFQESHFVLRGMAEKGLTPKC----TQYITLINGMCRVGNFQGAFKLKDEMEALGISSS---DVAESAMVR  919 (1211)
Q Consensus       847 l~~~~~~~g~~~eA~~~~~~~~~~g~~p~~----~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~---~~~~~~l~~  919 (1211)
                      ++..+...|++++|+..|+++++  ..|+.    ..+..++.++...|++++|...|+++++.. +.+   ..++..++.
T Consensus         8 ~a~~~~~~~~~~~A~~~~~~~~~--~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~la~   84 (129)
T 2xev_A            8 VAFDALKNGKYDDASQLFLSFLE--LYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY-PTHDKAAGGLLKLGL   84 (129)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHH--HCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTSTTHHHHHHHHHH
T ss_pred             HHHHHHHhCCHHHHHHHHHHHHH--HCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC-CCCcccHHHHHHHHH
Confidence            33444444444444444444444  22321    234444444444444444444444444331 122   333444444


Q ss_pred             HHHhcCCHHHHHHHHHHHHhCC
Q 000951          920 GLAHCGKVEEAMLVLNRMLRMR  941 (1211)
Q Consensus       920 ~~~~~g~~~eA~~~~~~~~~~~  941 (1211)
                      ++...|++++|+..|+++++..
T Consensus        85 ~~~~~g~~~~A~~~~~~~~~~~  106 (129)
T 2xev_A           85 SQYGEGKNTEAQQTLQQVATQY  106 (129)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHS
T ss_pred             HHHHcCCHHHHHHHHHHHHHHC
Confidence            4444444444444444444433

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=98.34  E-value=2.9e-07  Score=107.75  Aligned_cols=123  Identities=11%  Similarity=0.010  Sum_probs=97.9

Q ss_pred             HHHHHHHHHhhcchhhHHHHHHHHHHcCCCCC-hhHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCchHHHHHHHHHHH
Q 000951          844 QDAIIMGLKRIAAFQESHFVLRGMAEKGLTPK-CTQYITLINGMCRVGNFQGAFKLKDEMEALGISSSDVAESAMVRGLA  922 (1211)
Q Consensus       844 ~~~l~~~~~~~g~~~eA~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~  922 (1211)
                      |..++..+.+.|++++|+..|+++++  ..|+ ..++..++.++...|++++|++.|+++++.. +.+..++..++.+|.
T Consensus         9 ~~~lg~~~~~~g~~~~A~~~~~~Al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~   85 (477)
T 1wao_1            9 LKTQANDYFKAKDYENAIKFYSQAIE--LNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNM   85 (477)
T ss_dssp             SSSSSSSTTTTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHH--hCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence            44455566778888888888888888  6775 4788889999999999999999999998873 566778889999999


Q ss_pred             hcCCHHHHHHHHHHHHhCCcccCHHHHHHHHHH--hhhhCCHHHHHHHHH
Q 000951          923 HCGKVEEAMLVLNRMLRMRLVPTIATFTTLIHK--FCKEAKFVDALKLKG  970 (1211)
Q Consensus       923 ~~g~~~eA~~~~~~~~~~~~~p~~~~~~~L~~~--~~~~g~~~~A~~~~~  970 (1211)
                      ..|++++|++.|+++++..|. +..++..++.+  +.+.|++++|++.++
T Consensus        86 ~~g~~~eA~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~g~~~~A~~~~~  134 (477)
T 1wao_1           86 ALGKFRAALRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDE  134 (477)
T ss_dssp             HHTCHHHHHHHHHHHHHHSTT-CTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred             HcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence            999999999999999987765 66677777777  888899999999876

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=98.33  E-value=2.7e-06  Score=76.83  Aligned_cols=97  Identities=14%  Similarity=0.055  Sum_probs=48.2

Q ss_pred             hHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCccc-CHHHHHHHHHH
Q 000951          877 TQYITLINGMCRVGNFQGAFKLKDEMEALGISSSDVAESAMVRGLAHCGKVEEAMLVLNRMLRMRLVP-TIATFTTLIHK  955 (1211)
Q Consensus       877 ~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~p-~~~~~~~L~~~  955 (1211)
                      ..+..++..+...|++++|...|+++++.. +.+..++..++.++...|++++|++.|+++++..+.. +..+|..++.+
T Consensus         7 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~   85 (112)
T 2kck_A            7 EEYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADA   85 (112)
T ss_dssp             TGGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHH
Confidence            334444555555555555555555554432 3334445555555555555555555555555543210 34455555555


Q ss_pred             hhhh-CCHHHHHHHHHHHHh
Q 000951          956 FCKE-AKFVDALKLKGTMEL  974 (1211)
Q Consensus       956 ~~~~-g~~~~A~~~~~~~~~  974 (1211)
                      +... |++++|++.++....
T Consensus        86 ~~~~~~~~~~A~~~~~~~~~  105 (112)
T 2kck_A           86 LRYIEGKEVEAEIAEARAKL  105 (112)
T ss_dssp             HTTCSSCSHHHHHHHHHHGG
T ss_pred             HHHHhCCHHHHHHHHHHHhh
Confidence            5555 555555555554443

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.33  E-value=8.3e-06  Score=78.08  Aligned_cols=110  Identities=10%  Similarity=-0.010  Sum_probs=86.4

Q ss_pred             hhHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCc----hHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCcccCHHHHHH
Q 000951          876 CTQYITLINGMCRVGNFQGAFKLKDEMEALGISSS----DVAESAMVRGLAHCGKVEEAMLVLNRMLRMRLVPTIATFTT  951 (1211)
Q Consensus       876 ~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~p~~~~~~~  951 (1211)
                      ...+..++..+...|++++|...|+++++.  .|+    ..++..++.++...|++++|+..++++++..+. +..+|..
T Consensus        28 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~  104 (148)
T 2dba_A           28 VEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGG-DVKALYR  104 (148)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSC-CHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCcc-CHHHHHH
Confidence            467788888888899999999999988865  344    567888888888889999999999888887655 7788888


Q ss_pred             HHHHhhhhCCHHHHHHHHHHHHhcCCCCchH-HHHHHHHH
Q 000951          952 LIHKFCKEAKFVDALKLKGTMELSGVKLDVV-SYNVLISG  990 (1211)
Q Consensus       952 L~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~  990 (1211)
                      ++.++...|++++|...|+.....  .|+.. .+..+..+
T Consensus       105 ~a~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~  142 (148)
T 2dba_A          105 RSQALEKLGRLDQAVLDLQRCVSL--EPKNKVFQEALRNI  142 (148)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHH--CSSCHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHH
Confidence            888888899999998888876665  67544 44444444

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=98.32  E-value=9.3e-07  Score=98.50  Aligned_cols=144  Identities=10%  Similarity=-0.089  Sum_probs=64.2

Q ss_pred             HHHHHHHHHhhcchhhHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCchHHHHHHHHHHHh
Q 000951          844 QDAIIMGLKRIAAFQESHFVLRGMAEKGLTPKCTQYITLINGMCRVGNFQGAFKLKDEMEALGISSSDVAESAMVRGLAH  923 (1211)
Q Consensus       844 ~~~l~~~~~~~g~~~eA~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~  923 (1211)
                      +..++..+.+.|++++|+..|+++++  ..|+...       +...|+++++...+.          ..+|..++.+|.+
T Consensus       182 ~~~~g~~~~~~g~~~~A~~~y~~Al~--~~p~~~~-------~~~~~~~~~~~~~l~----------~~~~~nla~~~~~  242 (338)
T 2if4_A          182 RKMDGNSLFKEEKLEEAMQQYEMAIA--YMGDDFM-------FQLYGKYQDMALAVK----------NPCHLNIAACLIK  242 (338)
T ss_dssp             HHHHHHHTCSSSCCHHHHHHHHHHHH--HSCHHHH-------HTCCHHHHHHHHHHH----------THHHHHHHHHHHT
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHH--Hhccchh-------hhhcccHHHHHHHHH----------HHHHHHHHHHHHH
Confidence            44555556666666666666666665  4443321       112233333322211          1255666677777


Q ss_pred             cCCHHHHHHHHHHHHhCCcccCHHHHHHHHHHhhhhCCHHHHHHHHHHHHhcCCCCchH-HHHHHHHH-HHhCCChhHHH
Q 000951          924 CGKVEEAMLVLNRMLRMRLVPTIATFTTLIHKFCKEAKFVDALKLKGTMELSGVKLDVV-SYNVLISG-LCANGDVMPAF 1001 (1211)
Q Consensus       924 ~g~~~eA~~~~~~~~~~~~~p~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~-~~~~g~~~~a~ 1001 (1211)
                      .|++++|+..|+++++.++. +..+|..++.+|...|++++|+..|+....  +.|+.. .+..+..+ ....+..+.+.
T Consensus       243 ~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~a~~~~g~~~~A~~~l~~al~--l~p~~~~a~~~L~~l~~~~~~~~~~a~  319 (338)
T 2if4_A          243 LKRYDEAIGHCNIVLTEEEK-NPKALFRRGKAKAELGQMDSARDDFRKAQK--YAPDDKAIRRELRALAEQEKALYQKQK  319 (338)
T ss_dssp             TTCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-----------------------------
T ss_pred             cCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            77777777777777776544 666777777777777777777777664433  356443 45555554 33445566666


Q ss_pred             HHHHHHHH
Q 000951         1002 ELYEEMKH 1009 (1211)
Q Consensus      1002 ~~~~~~~~ 1009 (1211)
                      +.++.|.+
T Consensus       320 ~~~~~~l~  327 (338)
T 2if4_A          320 EMYKGIFK  327 (338)
T ss_dssp             --------
T ss_pred             HHHHHhhC
Confidence            66666643

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=98.32  E-value=4.2e-06  Score=78.06  Aligned_cols=110  Identities=7%  Similarity=0.061  Sum_probs=92.2

Q ss_pred             hHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCcccCHHHHHHHHHHhhhhCCHHHHHHHHHHHHhcCCCCc--------hH
Q 000951          911 DVAESAMVRGLAHCGKVEEAMLVLNRMLRMRLVPTIATFTTLIHKFCKEAKFVDALKLKGTMELSGVKLD--------VV  982 (1211)
Q Consensus       911 ~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~p~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~p~--------~~  982 (1211)
                      ...+..++..+...|++++|+..|+++++..+. +..++..++.++...|++++|+..++.....  .|+        ..
T Consensus         4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~   80 (131)
T 1elr_A            4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPT-NMTYITNQAAVYFEKGDYNKCRELCEKAIEV--GRENREDYRQIAK   80 (131)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--HHHSTTCHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHhccHHHHHHHHHHHHhh--ccccchhHHHHHH
Confidence            456788899999999999999999999998765 8899999999999999999999998877655  443        45


Q ss_pred             HHHHHHHHHHhCCChhHHHHHHHHHHHcCCccChhhHHHHHHH
Q 000951          983 SYNVLISGLCANGDVMPAFELYEEMKHKGLCPNSTTYSVLIDA 1025 (1211)
Q Consensus       983 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~ 1025 (1211)
                      .+..++.+|...|++++|.+.+++..+.  .|++..+..+...
T Consensus        81 ~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~  121 (131)
T 1elr_A           81 AYARIGNSYFKEEKYKDAIHFYNKSLAE--HRTPDVLKKCQQA  121 (131)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCHHHHHHHHHH
Confidence            7889999999999999999999998874  4556555555443

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=98.32  E-value=3.3e-06  Score=76.20  Aligned_cols=100  Identities=8%  Similarity=-0.049  Sum_probs=88.1

Q ss_pred             CCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCcccCHHHHHHHHHHhhhhCCHHHHHHHHHHHHhcCCCCc---hHHH
Q 000951          908 SSSDVAESAMVRGLAHCGKVEEAMLVLNRMLRMRLVPTIATFTTLIHKFCKEAKFVDALKLKGTMELSGVKLD---VVSY  984 (1211)
Q Consensus       908 ~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~p~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~p~---~~~~  984 (1211)
                      +.+...+..++..+...|++++|+..|+++++..+. +..+|..++.++...|++++|+..++.....  .|+   ...+
T Consensus         3 p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~   79 (112)
T 2kck_A            3 DQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPE-ESKYWLMKGKALYNLERYEEAVDCYNYVINV--IEDEYNKDVW   79 (112)
T ss_dssp             CSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--SCCTTCHHHH
T ss_pred             CCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CcccchHHHH
Confidence            345667888999999999999999999999998765 8889999999999999999999999877766  666   4488


Q ss_pred             HHHHHHHHhC-CChhHHHHHHHHHHHc
Q 000951          985 NVLISGLCAN-GDVMPAFELYEEMKHK 1010 (1211)
Q Consensus       985 ~~l~~~~~~~-g~~~~a~~~~~~~~~~ 1010 (1211)
                      ..++.+|... |++++|.+.++...+.
T Consensus        80 ~~l~~~~~~~~~~~~~A~~~~~~~~~~  106 (112)
T 2kck_A           80 AAKADALRYIEGKEVEAEIAEARAKLE  106 (112)
T ss_dssp             HHHHHHHTTCSSCSHHHHHHHHHHGGG
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHhhc
Confidence            9999999999 9999999999998663

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=98.32  E-value=1.1e-06  Score=80.47  Aligned_cols=85  Identities=12%  Similarity=-0.010  Sum_probs=43.6

Q ss_pred             cCChhhHHHHHHHHHHcC--CCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCcccCHHHHHHHHHHhhhhCCHHHHH
Q 000951          889 VGNFQGAFKLKDEMEALG--ISSSDVAESAMVRGLAHCGKVEEAMLVLNRMLRMRLVPTIATFTTLIHKFCKEAKFVDAL  966 (1211)
Q Consensus       889 ~g~~~eA~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~p~~~~~~~L~~~~~~~g~~~~A~  966 (1211)
                      .|++++|+..|+++++.+  .+.+..++..++.+|...|++++|+..|+++++.+|. ++.++..++.++...|++++|+
T Consensus         3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~   81 (117)
T 3k9i_A            3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPN-HQALRVFYAMVLYNLGRYEQGV   81 (117)
T ss_dssp             ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHH
T ss_pred             CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHcCCHHHHH
Confidence            345555555555555432  1223344555555555556666666666666555544 5555556666666666666666


Q ss_pred             HHHHHHHh
Q 000951          967 KLKGTMEL  974 (1211)
Q Consensus       967 ~~~~~~~~  974 (1211)
                      ..++....
T Consensus        82 ~~~~~al~   89 (117)
T 3k9i_A           82 ELLLKIIA   89 (117)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            65554443

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=98.31  E-value=4.5e-06  Score=81.70  Aligned_cols=101  Identities=9%  Similarity=-0.060  Sum_probs=71.7

Q ss_pred             HHHHHHHHHhcCChhhHHHHHHHHHHc-------C----------CCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 000951          879 YITLINGMCRVGNFQGAFKLKDEMEAL-------G----------ISSSDVAESAMVRGLAHCGKVEEAMLVLNRMLRMR  941 (1211)
Q Consensus       879 ~~~l~~~~~~~g~~~eA~~~~~~~~~~-------~----------~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~  941 (1211)
                      +...+..+.+.|++++|+..|+++++.       .          .+....+|..++.+|.+.|++++|+..++++++.+
T Consensus        14 ~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~   93 (162)
T 3rkv_A           14 LRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKRE   93 (162)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC
Confidence            444555555555555555555555433       0          12234577788888888888888888888888887


Q ss_pred             cccCHHHHHHHHHHhhhhCCHHHHHHHHHHHHhcCCCCchH
Q 000951          942 LVPTIATFTTLIHKFCKEAKFVDALKLKGTMELSGVKLDVV  982 (1211)
Q Consensus       942 ~~p~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~  982 (1211)
                      |. ++.+|..+|.+|...|++++|+..|+.....  .|+..
T Consensus        94 p~-~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l--~p~~~  131 (162)
T 3rkv_A           94 ET-NEKALFRRAKARIAAWKLDEAEEDLKLLLRN--HPAAA  131 (162)
T ss_dssp             TT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CGGGH
T ss_pred             Cc-chHHHHHHHHHHHHHhcHHHHHHHHHHHHhc--CCCCH
Confidence            65 7888888888888888888888888876665  77654

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=98.29  E-value=1.2e-05  Score=93.59  Aligned_cols=166  Identities=5%  Similarity=-0.099  Sum_probs=94.7

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHHcCC-CCC----HhhHHHHHHHHHhcCcHHHHHHHHHHHHH----CCCCCC-hhh
Q 000951          774 CHSLILGFCETGMLEVGFKFLKKMIAEGT-MVD----CFTFNVLMRKCCEAGEMGKAFDLFNIMNM----LGVVPD-TNT  843 (1211)
Q Consensus       774 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~-~~~  843 (1211)
                      +..++..|...|++++|.+++.++.+.-. .++    ..+.+.+...+...|++++|+++++....    .+..+. ..+
T Consensus        58 l~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~  137 (434)
T 4b4t_Q           58 ILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSL  137 (434)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHH
Confidence            44566677777777777777776654310 011    12333344455556677777777766542    111111 345


Q ss_pred             HHHHHHHHHhhcchhhHHHHHHHHHHc--CCC--CC-hhHHHHHHHHHHhcCChhhHHHHHHHHHHc----CCCCc--hH
Q 000951          844 QDAIIMGLKRIAAFQESHFVLRGMAEK--GLT--PK-CTQYITLINGMCRVGNFQGAFKLKDEMEAL----GISSS--DV  912 (1211)
Q Consensus       844 ~~~l~~~~~~~g~~~eA~~~~~~~~~~--g~~--p~-~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~----~~~~~--~~  912 (1211)
                      +..++..|...|++++|...+++++..  +..  |. ..++..++.+|...|++++|..+++++...    +.++.  ..
T Consensus       138 ~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~  217 (434)
T 4b4t_Q          138 SIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAE  217 (434)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred             HHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHH
Confidence            566677777777777777777766642  111  11 156666777777777777777777776532    11111  23


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 000951          913 AESAMVRGLAHCGKVEEAMLVLNRMLR  939 (1211)
Q Consensus       913 ~~~~l~~~~~~~g~~~eA~~~~~~~~~  939 (1211)
                      .+..++..+...|++++|...|.++++
T Consensus       218 ~~~~~g~~~~~~~~y~~A~~~~~~a~~  244 (434)
T 4b4t_Q          218 LDLMSGILHCEDKDYKTAFSYFFESFE  244 (434)
T ss_dssp             HHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence            455566666677777777776666654

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=98.29  E-value=1.9e-05  Score=91.74  Aligned_cols=165  Identities=8%  Similarity=-0.025  Sum_probs=121.6

Q ss_pred             hHHHHHHHHHhcCcHHHHHHHHHHHHHCC-CCCC----hhhHHHHHHHHHhhcchhhHHHHHHHHHH----cCCCCC-hh
Q 000951          808 TFNVLMRKCCEAGEMGKAFDLFNIMNMLG-VVPD----TNTQDAIIMGLKRIAAFQESHFVLRGMAE----KGLTPK-CT  877 (1211)
Q Consensus       808 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~----~~~~~~l~~~~~~~g~~~eA~~~~~~~~~----~g~~p~-~~  877 (1211)
                      .+..++..|...|++++|.+.++++...- ..++    ....+.+...+...|++++|+.++++.+.    .+..+. ..
T Consensus        57 al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~  136 (434)
T 4b4t_Q           57 SILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHS  136 (434)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHH
Confidence            35678899999999999999999876411 0112    23445566667778999999999998875    233333 36


Q ss_pred             HHHHHHHHHHhcCChhhHHHHHHHHHHc--CCCC---chHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC---ccc---CH
Q 000951          878 QYITLINGMCRVGNFQGAFKLKDEMEAL--GISS---SDVAESAMVRGLAHCGKVEEAMLVLNRMLRMR---LVP---TI  946 (1211)
Q Consensus       878 ~~~~l~~~~~~~g~~~eA~~~~~~~~~~--~~~~---~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~---~~p---~~  946 (1211)
                      ++..++..+...|++++|..+++++...  +..+   ...++..++.+|...|++++|..++++++...   +.|   -.
T Consensus       137 ~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~  216 (434)
T 4b4t_Q          137 LSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVA  216 (434)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHH
T ss_pred             HHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHH
Confidence            7888999999999999999999998632  2111   23467788999999999999999999887632   111   23


Q ss_pred             HHHHHHHHHhhhhCCHHHHHHHHHHH
Q 000951          947 ATFTTLIHKFCKEAKFVDALKLKGTM  972 (1211)
Q Consensus       947 ~~~~~L~~~~~~~g~~~~A~~~~~~~  972 (1211)
                      ..+..++..+...|++++|...|...
T Consensus       217 ~~~~~~g~~~~~~~~y~~A~~~~~~a  242 (434)
T 4b4t_Q          217 ELDLMSGILHCEDKDYKTAFSYFFES  242 (434)
T ss_dssp             HHHHHHHHHTTSSSCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence            56777888888999999998876543

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=98.28  E-value=1.1e-05  Score=75.05  Aligned_cols=100  Identities=10%  Similarity=-0.069  Sum_probs=72.7

Q ss_pred             HHHHHHHHHhcCChhhHHHHHHHHHHcCCCCch---HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCcccC---HHHHHHH
Q 000951          879 YITLINGMCRVGNFQGAFKLKDEMEALGISSSD---VAESAMVRGLAHCGKVEEAMLVLNRMLRMRLVPT---IATFTTL  952 (1211)
Q Consensus       879 ~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~p~---~~~~~~L  952 (1211)
                      +..++..+...|++++|...|+++++.. +.+.   .++..++.++...|++++|+..|+++++..|. +   +.++..+
T Consensus         5 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~l   82 (129)
T 2xev_A            5 AYNVAFDALKNGKYDDASQLFLSFLELY-PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPT-HDKAAGGLLKL   82 (129)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-STTHHHHHHHH
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHHC-CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCC-CcccHHHHHHH
Confidence            4566777778888888888888887653 3333   46777788888888888888888888876654 4   5667778


Q ss_pred             HHHhhhhCCHHHHHHHHHHHHhcCCCCchH
Q 000951          953 IHKFCKEAKFVDALKLKGTMELSGVKLDVV  982 (1211)
Q Consensus       953 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~  982 (1211)
                      +.++...|++++|+..|+.....  .|+..
T Consensus        83 a~~~~~~g~~~~A~~~~~~~~~~--~p~~~  110 (129)
T 2xev_A           83 GLSQYGEGKNTEAQQTLQQVATQ--YPGSD  110 (129)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHH--STTSH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHH--CCCCh
Confidence            88888888888888887766655  56544

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=98.27  E-value=6.4e-07  Score=104.86  Aligned_cols=124  Identities=14%  Similarity=0.012  Sum_probs=103.9

Q ss_pred             HHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCcccCHHHHHHHHHHhh
Q 000951          878 QYITLINGMCRVGNFQGAFKLKDEMEALGISSSDVAESAMVRGLAHCGKVEEAMLVLNRMLRMRLVPTIATFTTLIHKFC  957 (1211)
Q Consensus       878 ~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~p~~~~~~~L~~~~~  957 (1211)
                      .+..++..+...|++++|++.|+++++.. +.+..++..++.+|.+.|++++|++.|+++++.+|. +..+|..++.+|.
T Consensus         8 ~~~~lg~~~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~lg~~~~   85 (477)
T 1wao_1            8 ELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK-YIKGYYRRAASNM   85 (477)
T ss_dssp             TSSSSSSSTTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT-CHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHH
Confidence            34556667788999999999999999873 667889999999999999999999999999999876 8999999999999


Q ss_pred             hhCCHHHHHHHHHHHHhcCCCCchH-HHHHHHHH--HHhCCChhHHHHHHH
Q 000951          958 KEAKFVDALKLKGTMELSGVKLDVV-SYNVLISG--LCANGDVMPAFELYE 1005 (1211)
Q Consensus       958 ~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~--~~~~g~~~~a~~~~~ 1005 (1211)
                      ..|++++|++.|+...+.  .|+.. .+..++.+  +...|++++|++.++
T Consensus        86 ~~g~~~eA~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~  134 (477)
T 1wao_1           86 ALGKFRAALRDYETVVKV--KPHDKDAKMKYQECNKIVKQKAFERAIAGDE  134 (477)
T ss_dssp             HHTCHHHHHHHHHHHHHH--STTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred             HcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence            999999999999887766  77544 67777766  888899999999988

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=98.27  E-value=1.7e-06  Score=79.28  Aligned_cols=92  Identities=11%  Similarity=0.060  Sum_probs=66.3

Q ss_pred             hcchhhHHHHHHHHHHcCC-CCC-hhHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHH
Q 000951          854 IAAFQESHFVLRGMAEKGL-TPK-CTQYITLINGMCRVGNFQGAFKLKDEMEALGISSSDVAESAMVRGLAHCGKVEEAM  931 (1211)
Q Consensus       854 ~g~~~eA~~~~~~~~~~g~-~p~-~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~  931 (1211)
                      .|++++|+..|+++++.+. .|+ ..++..++.++...|++++|+..|+++++.. +.+..++..++.++...|++++|+
T Consensus         3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~   81 (117)
T 3k9i_A            3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGRYEQGV   81 (117)
T ss_dssp             ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred             CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCCHHHHH
Confidence            5777888888888877221 354 3678888888888888888888888888763 556777888888888888888888


Q ss_pred             HHHHHHHhCCcccCHH
Q 000951          932 LVLNRMLRMRLVPTIA  947 (1211)
Q Consensus       932 ~~~~~~~~~~~~p~~~  947 (1211)
                      ..|+++++..|. ++.
T Consensus        82 ~~~~~al~~~p~-~~~   96 (117)
T 3k9i_A           82 ELLLKIIAETSD-DET   96 (117)
T ss_dssp             HHHHHHHHHHCC-CHH
T ss_pred             HHHHHHHHhCCC-cHH
Confidence            888888886544 443

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=98.23  E-value=4.7e-06  Score=93.80  Aligned_cols=88  Identities=6%  Similarity=-0.183  Sum_probs=56.4

Q ss_pred             hHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCcccCHHHHHHHHHHhhhhCCHHHHHHHHHHHHhcCCCCchH-HHHHHHH
Q 000951          911 DVAESAMVRGLAHCGKVEEAMLVLNRMLRMRLVPTIATFTTLIHKFCKEAKFVDALKLKGTMELSGVKLDVV-SYNVLIS  989 (1211)
Q Consensus       911 ~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~p~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~  989 (1211)
                      ..+|..++.+|.+.|++++|++.++++++.++. +..+|..++.+|...|++++|+..|+.....  .|+.. .+..+..
T Consensus       273 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l--~P~~~~~~~~l~~  349 (370)
T 1ihg_A          273 LSCVLNIGACKLKMSDWQGAVDSCLEALEIDPS-NTKALYRRAQGWQGLKEYDQALADLKKAQEI--APEDKAIQAELLK  349 (370)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccCHHHHHHHHHHHHHhCch-hHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHH
Confidence            445666677777777777777777777776654 6667777777777777777777776655554  56433 5555555


Q ss_pred             HHHhCCChhHHH
Q 000951          990 GLCANGDVMPAF 1001 (1211)
Q Consensus       990 ~~~~~g~~~~a~ 1001 (1211)
                      ++...++.+++.
T Consensus       350 ~~~~~~~~~~a~  361 (370)
T 1ihg_A          350 VKQKIKAQKDKE  361 (370)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            665555555544

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=98.22  E-value=5.7e-06  Score=93.10  Aligned_cols=91  Identities=15%  Similarity=0.060  Sum_probs=80.2

Q ss_pred             hhHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCcccCHHHHHHHHHH
Q 000951          876 CTQYITLINGMCRVGNFQGAFKLKDEMEALGISSSDVAESAMVRGLAHCGKVEEAMLVLNRMLRMRLVPTIATFTTLIHK  955 (1211)
Q Consensus       876 ~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~p~~~~~~~L~~~  955 (1211)
                      ..+|..++.++.+.|++++|++.++++++.. +.+..++..++.+|...|++++|++.|+++++..|. +..++..++.+
T Consensus       273 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~-~~~~~~~l~~~  350 (370)
T 1ihg_A          273 LSCVLNIGACKLKMSDWQGAVDSCLEALEID-PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPE-DKAIQAELLKV  350 (370)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHH
Confidence            3778899999999999999999999999763 567888999999999999999999999999998766 88899999999


Q ss_pred             hhhhCCHHHHHHH
Q 000951          956 FCKEAKFVDALKL  968 (1211)
Q Consensus       956 ~~~~g~~~~A~~~  968 (1211)
                      +...++.+++.+.
T Consensus       351 ~~~~~~~~~a~k~  363 (370)
T 1ihg_A          351 KQKIKAQKDKEKA  363 (370)
T ss_dssp             HHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHH
Confidence            9999988888663

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=98.22  E-value=6.6e-06  Score=80.12  Aligned_cols=94  Identities=13%  Similarity=0.063  Sum_probs=43.5

Q ss_pred             HHHHHHHHHHhcCChhhHHHHHHHHHHcC--CC--C-chHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCc----cc-CHH
Q 000951          878 QYITLINGMCRVGNFQGAFKLKDEMEALG--IS--S-SDVAESAMVRGLAHCGKVEEAMLVLNRMLRMRL----VP-TIA  947 (1211)
Q Consensus       878 ~~~~l~~~~~~~g~~~eA~~~~~~~~~~~--~~--~-~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~----~p-~~~  947 (1211)
                      ++..++..+...|++++|...++++.+..  ..  + ...++..++.++...|++++|.+.++++++...    .+ ...
T Consensus        51 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~  130 (164)
T 3ro3_A           51 AYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGR  130 (164)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHH
Confidence            44455555555555555555555554220  00  0 022344455555555555555555555543210    00 123


Q ss_pred             HHHHHHHHhhhhCCHHHHHHHHHH
Q 000951          948 TFTTLIHKFCKEAKFVDALKLKGT  971 (1211)
Q Consensus       948 ~~~~L~~~~~~~g~~~~A~~~~~~  971 (1211)
                      ++..++.++...|++++|...++.
T Consensus       131 ~~~~la~~~~~~g~~~~A~~~~~~  154 (164)
T 3ro3_A          131 ACWSLGNAYTALGNHDQAMHFAEK  154 (164)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHH
Confidence            444555555555555555555443

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=98.19  E-value=3.2e-06  Score=94.17  Aligned_cols=145  Identities=11%  Similarity=0.060  Sum_probs=83.1

Q ss_pred             hHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCcccCHHHHHHHHHHh
Q 000951          877 TQYITLINGMCRVGNFQGAFKLKDEMEALGISSSDVAESAMVRGLAHCGKVEEAMLVLNRMLRMRLVPTIATFTTLIHKF  956 (1211)
Q Consensus       877 ~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~p~~~~~~~L~~~~  956 (1211)
                      ..+..++..+...|++++|+..|+++++.  .|+..       .+...|+++++...+.          ..+|..++.+|
T Consensus       180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~-------~~~~~~~~~~~~~~l~----------~~~~~nla~~~  240 (338)
T 2if4_A          180 DRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDF-------MFQLYGKYQDMALAVK----------NPCHLNIAACL  240 (338)
T ss_dssp             HHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHH-------HHTCCHHHHHHHHHHH----------THHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccch-------hhhhcccHHHHHHHHH----------HHHHHHHHHHH
Confidence            34666777777888888888888887754  23222       1233444444443321          13889999999


Q ss_pred             hhhCCHHHHHHHHHHHHhcCCCCch-HHHHHHHHHHHhCCChhHHHHHHHHHHHcCCccCh-hhHHHHHHHHHhcccchH
Q 000951          957 CKEAKFVDALKLKGTMELSGVKLDV-VSYNVLISGLCANGDVMPAFELYEEMKHKGLCPNS-TTYSVLIDAISKKENNLV 1034 (1211)
Q Consensus       957 ~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~~~~~~ 1034 (1211)
                      .+.|++++|+..++.....  .|+. ..|+.++.+|...|++++|.+.+++..+  +.|+. ..+..+...........+
T Consensus       241 ~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~--l~p~~~~a~~~L~~l~~~~~~~~~  316 (338)
T 2if4_A          241 IKLKRYDEAIGHCNIVLTE--EEKNPKALFRRGKAKAELGQMDSARDDFRKAQK--YAPDDKAIRRELRALAEQEKALYQ  316 (338)
T ss_dssp             HTTTCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------
T ss_pred             HHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999877766  7854 4899999999999999999999999854  56766 666666655455555555


Q ss_pred             HHHHHHHHHH
Q 000951         1035 KGEILLKDIQ 1044 (1211)
Q Consensus      1035 ~a~~~~~~l~ 1044 (1211)
                      ++..+++.+.
T Consensus       317 ~a~~~~~~~l  326 (338)
T 2if4_A          317 KQKEMYKGIF  326 (338)
T ss_dssp             ----------
T ss_pred             HHHHHHHHhh
Confidence            5777776653

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=98.18  E-value=8e-06  Score=79.50  Aligned_cols=133  Identities=14%  Similarity=0.084  Sum_probs=98.2

Q ss_pred             hHHHHHHHHHHhcCChhhHHHHHHHHHHcCCC-Cc----hHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCccc-----CH
Q 000951          877 TQYITLINGMCRVGNFQGAFKLKDEMEALGIS-SS----DVAESAMVRGLAHCGKVEEAMLVLNRMLRMRLVP-----TI  946 (1211)
Q Consensus       877 ~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~p-----~~  946 (1211)
                      .++..++..+...|++++|+..++++++.... ++    ..++..++.++...|++++|++.++++++.....     ..
T Consensus        10 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~   89 (164)
T 3ro3_A           10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEA   89 (164)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHH
Confidence            45666777777777777777777777543110 11    2367788999999999999999999998753221     25


Q ss_pred             HHHHHHHHHhhhhCCHHHHHHHHHHHHhc----CCCCc-hHHHHHHHHHHHhCCChhHHHHHHHHHHH
Q 000951          947 ATFTTLIHKFCKEAKFVDALKLKGTMELS----GVKLD-VVSYNVLISGLCANGDVMPAFELYEEMKH 1009 (1211)
Q Consensus       947 ~~~~~L~~~~~~~g~~~~A~~~~~~~~~~----~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 1009 (1211)
                      .++..++.++...|++++|+..++.....    +..+. ...+..++.+|...|++++|.+.+++..+
T Consensus        90 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~  157 (164)
T 3ro3_A           90 QSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE  157 (164)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence            67889999999999999999988765433    11122 23568888899999999999999988765

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=98.15  E-value=4e-06  Score=78.97  Aligned_cols=105  Identities=13%  Similarity=0.078  Sum_probs=67.7

Q ss_pred             HhhcchhhHHHHHHHHHHcCCCCC-hhHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHH
Q 000951          852 KRIAAFQESHFVLRGMAEKGLTPK-CTQYITLINGMCRVGNFQGAFKLKDEMEALGISSSDVAESAMVRGLAHCGKVEEA  930 (1211)
Q Consensus       852 ~~~g~~~eA~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA  930 (1211)
                      .+.+++++|+..++++++  .+|+ ...|..++.++...++++.+....+                         .+++|
T Consensus        13 ~r~~~feeA~~~~~~Ai~--l~P~~aea~~n~G~~l~~l~~~~~g~~al~-------------------------~~~eA   65 (158)
T 1zu2_A           13 DRILLFEQIRQDAENTYK--SNPLDADNLTRWGGVLLELSQFHSISDAKQ-------------------------MIQEA   65 (158)
T ss_dssp             HHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHSCHHHHHH-------------------------HHHHH
T ss_pred             HHHhHHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHhcccchhhhhHh-------------------------HHHHH
Confidence            344556666666666665  5553 3555555555555555443332211                         25688


Q ss_pred             HHHHHHHHhCCcccCHHHHHHHHHHhhhhC-----------CHHHHHHHHHHHHhcCCCCchHHHHH
Q 000951          931 MLVLNRMLRMRLVPTIATFTTLIHKFCKEA-----------KFVDALKLKGTMELSGVKLDVVSYNV  986 (1211)
Q Consensus       931 ~~~~~~~~~~~~~p~~~~~~~L~~~~~~~g-----------~~~~A~~~~~~~~~~~~~p~~~~~~~  986 (1211)
                      +..|+++++.+|. +..+|..+|.+|...|           ++++|++.|+...+.  +|+...|..
T Consensus        66 i~~le~AL~ldP~-~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l--~P~~~~y~~  129 (158)
T 1zu2_A           66 ITKFEEALLIDPK-KDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDE--QPDNTHYLK  129 (158)
T ss_dssp             HHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHH
T ss_pred             HHHHHHHHHhCcC-cHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHh--CCCCHHHHH
Confidence            8888888887766 7788888888888764           788888888876665  787665533

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=98.03  E-value=2.4e-05  Score=90.63  Aligned_cols=53  Identities=9%  Similarity=0.026  Sum_probs=31.4

Q ss_pred             HHhhcchhhHHHHHHHHHH---cCCCCCh----hHHHHHHHHHHhcCChhhHHHHHHHHH
Q 000951          851 LKRIAAFQESHFVLRGMAE---KGLTPKC----TQYITLINGMCRVGNFQGAFKLKDEME  903 (1211)
Q Consensus       851 ~~~~g~~~eA~~~~~~~~~---~g~~p~~----~~~~~l~~~~~~~g~~~eA~~~~~~~~  903 (1211)
                      +..+|++++|+.++++.++   .-+.|++    .++..|+.+|..+|+|++|..++++++
T Consensus       319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL  378 (490)
T 3n71_A          319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMV  378 (490)
T ss_dssp             HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence            4455666666666666664   1122321    556666677777777777776666654

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=98.02  E-value=1e-05  Score=76.22  Aligned_cols=101  Identities=8%  Similarity=-0.059  Sum_probs=68.9

Q ss_pred             HHhcCcHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhcchh----------hHHHHHHHHHHcCCCCCh-hHHHHHHH
Q 000951          816 CCEAGEMGKAFDLFNIMNMLGVVPDTNTQDAIIMGLKRIAAFQ----------ESHFVLRGMAEKGLTPKC-TQYITLIN  884 (1211)
Q Consensus       816 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~----------eA~~~~~~~~~~g~~p~~-~~~~~l~~  884 (1211)
                      ..+.+.+++|++.++++.+.. +.+...|..++.++...++++          +|+..|+++++  ++|+. .+|..++.
T Consensus        12 ~~r~~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~--ldP~~~~A~~~LG~   88 (158)
T 1zu2_A           12 FDRILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALL--IDPKKDEAVWCIGN   88 (158)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHH
T ss_pred             HHHHhHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHH--hCcCcHHHHHHHHH
Confidence            456778999999999998855 346899999999999998865          67777777766  66653 56666666


Q ss_pred             HHHhcCChhhHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCcc
Q 000951          885 GMCRVGNFQGAFKLKDEMEALGISSSDVAESAMVRGLAHCGKVEEAMLVLNRMLRMRLV  943 (1211)
Q Consensus       885 ~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~  943 (1211)
                      +|...|.+               .|+..         ...|++++|++.|+++++.+|.
T Consensus        89 ay~~lg~l---------------~P~~~---------~a~g~~~eA~~~~~kAl~l~P~  123 (158)
T 1zu2_A           89 AYTSFAFL---------------TPDET---------EAKHNFDLATQFFQQAVDEQPD  123 (158)
T ss_dssp             HHHHHHHH---------------CCCHH---------HHHHHHHHHHHHHHHHHHHCTT
T ss_pred             HHHHhccc---------------Ccchh---------hhhccHHHHHHHHHHHHHhCCC
Confidence            66655421               11110         0124677777777777776543

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=97.93  E-value=3e-05  Score=69.73  Aligned_cols=89  Identities=13%  Similarity=0.052  Sum_probs=47.3

Q ss_pred             hHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCcccC------HHHHH
Q 000951          877 TQYITLINGMCRVGNFQGAFKLKDEMEALGISSSDVAESAMVRGLAHCGKVEEAMLVLNRMLRMRLVPT------IATFT  950 (1211)
Q Consensus       877 ~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~p~------~~~~~  950 (1211)
                      ..+..++..+...|++++|++.|+++++.. +.+..++..++.++...|++++|++.|+++++..|. +      ..++.
T Consensus         5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~   82 (111)
T 2l6j_A            5 EKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTST-AEHVAIRSKLQY   82 (111)
T ss_dssp             HHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSS-TTSHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-ccHHHHHHHHHH
Confidence            344455555555555555555555555442 334455555555555555566666655555555433 3      44455


Q ss_pred             HHHHHhhhhCCHHHHHH
Q 000951          951 TLIHKFCKEAKFVDALK  967 (1211)
Q Consensus       951 ~L~~~~~~~g~~~~A~~  967 (1211)
                      .++.++...|++++|+.
T Consensus        83 ~~~~~~~~~~~~~~a~~   99 (111)
T 2l6j_A           83 RLELAQGAVGSVQIPVV   99 (111)
T ss_dssp             HHHHHHHHHHCCCCCSS
T ss_pred             HHHHHHHHHHhHhhhHh
Confidence            55555555555555444

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=97.93  E-value=4.7e-05  Score=88.15  Aligned_cols=87  Identities=10%  Similarity=-0.024  Sum_probs=47.7

Q ss_pred             HhcCcHHHHHHHHHHHHH---CCCCCC----hhhHHHHHHHHHhhcchhhHHHHHHHHHH---cCCCC---Ch-hHHHHH
Q 000951          817 CEAGEMGKAFDLFNIMNM---LGVVPD----TNTQDAIIMGLKRIAAFQESHFVLRGMAE---KGLTP---KC-TQYITL  882 (1211)
Q Consensus       817 ~~~g~~~~A~~~~~~~~~---~~~~~~----~~~~~~l~~~~~~~g~~~eA~~~~~~~~~---~g~~p---~~-~~~~~l  882 (1211)
                      ..+|++++|+.+++++++   .-+.++    ..++++|+.+|...|++++|+.+++++++   .-+.|   +. .+++.|
T Consensus       320 ~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nL  399 (490)
T 3n71_A          320 RSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRA  399 (490)
T ss_dssp             HTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHH
T ss_pred             HhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence            344555555555554432   111121    33556666666666666666666666553   11222   22 566777


Q ss_pred             HHHHHhcCChhhHHHHHHHHH
Q 000951          883 INGMCRVGNFQGAFKLKDEME  903 (1211)
Q Consensus       883 ~~~~~~~g~~~eA~~~~~~~~  903 (1211)
                      +.+|..+|++++|..+|++++
T Consensus       400 a~~~~~~G~~~eA~~~~~~Al  420 (490)
T 3n71_A          400 GLTNWHAGHIEVGHGMICKAY  420 (490)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHH
Confidence            777777777777777766664

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=97.92  E-value=0.00015  Score=68.14  Aligned_cols=109  Identities=11%  Similarity=-0.120  Sum_probs=54.7

Q ss_pred             chhhHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCchHHHHHHHHHHHh----cCCHHHHH
Q 000951          856 AFQESHFVLRGMAEKGLTPKCTQYITLINGMCRVGNFQGAFKLKDEMEALGISSSDVAESAMVRGLAH----CGKVEEAM  931 (1211)
Q Consensus       856 ~~~eA~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~eA~  931 (1211)
                      ++++|+.+|++..+.| .|  ...  |+..|...+.+++|++.|+++.+.|   +..++..++.+|..    .+++++|.
T Consensus        10 d~~~A~~~~~~aa~~g-~~--~a~--lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~   81 (138)
T 1klx_A           10 DLKKAIQYYVKACELN-EM--FGC--LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAA   81 (138)
T ss_dssp             HHHHHHHHHHHHHHTT-CT--THH--HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred             CHHHHHHHHHHHHcCC-CH--hhh--HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHH
Confidence            4455555555555433 11  111  4445545555555555555555432   34445555555554    45555555


Q ss_pred             HHHHHHHhCCcccCHHHHHHHHHHhhh----hCCHHHHHHHHHHHHhc
Q 000951          932 LVLNRMLRMRLVPTIATFTTLIHKFCK----EAKFVDALKLKGTMELS  975 (1211)
Q Consensus       932 ~~~~~~~~~~~~p~~~~~~~L~~~~~~----~g~~~~A~~~~~~~~~~  975 (1211)
                      +.|+++.+.+   ++.++..|+.+|..    .+++++|...|+...+.
T Consensus        82 ~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~  126 (138)
T 1klx_A           82 QYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL  126 (138)
T ss_dssp             HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHC
Confidence            5555555543   44455555555555    45555555555544443

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=97.90  E-value=4e-05  Score=69.61  Aligned_cols=80  Identities=15%  Similarity=0.009  Sum_probs=48.3

Q ss_pred             hHHHHHHHHHHcCCCCC-hhHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 000951          859 ESHFVLRGMAEKGLTPK-CTQYITLINGMCRVGNFQGAFKLKDEMEALGISSSDVAESAMVRGLAHCGKVEEAMLVLNRM  937 (1211)
Q Consensus       859 eA~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~  937 (1211)
                      +|+..|+++++  ..|+ ...+..++.++...|++++|+..|+++++.. +.+..++..++.++...|++++|+..|+++
T Consensus         3 ~a~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~a   79 (115)
T 2kat_A            3 AITERLEAMLA--QGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESG   79 (115)
T ss_dssp             CHHHHHHHHHT--TTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHH--hCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            45556666655  5553 3556666666666666666666666666542 344555666666666666666666666666


Q ss_pred             HhCC
Q 000951          938 LRMR  941 (1211)
Q Consensus       938 ~~~~  941 (1211)
                      ++..
T Consensus        80 l~~~   83 (115)
T 2kat_A           80 LAAA   83 (115)
T ss_dssp             HHHH
T ss_pred             HHhc
Confidence            6543

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=97.90  E-value=3.2e-05  Score=69.52  Aligned_cols=93  Identities=11%  Similarity=0.004  Sum_probs=78.1

Q ss_pred             chHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCcccCHHHHHHHHHHhhhhCCHHHHHHHHHHHHhcCCCCch-------H
Q 000951          910 SDVAESAMVRGLAHCGKVEEAMLVLNRMLRMRLVPTIATFTTLIHKFCKEAKFVDALKLKGTMELSGVKLDV-------V  982 (1211)
Q Consensus       910 ~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~p~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-------~  982 (1211)
                      +...+..++..+...|++++|++.|+++++..|. ++.+|..++.++...|++++|+..++.....  .|+.       .
T Consensus         3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~   79 (111)
T 2l6j_A            3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQ-NPVGYSNKAMALIKLGEYTQAIQMCQQGLRY--TSTAEHVAIRSK   79 (111)
T ss_dssp             HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--CSSTTSHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCccHHHHHHH
Confidence            4567888999999999999999999999998766 8899999999999999999999998877655  7864       3


Q ss_pred             HHHHHHHHHHhCCChhHHHHHHH
Q 000951          983 SYNVLISGLCANGDVMPAFELYE 1005 (1211)
Q Consensus       983 ~~~~l~~~~~~~g~~~~a~~~~~ 1005 (1211)
                      .+..++.++...|+++.|.+.++
T Consensus        80 ~~~~~~~~~~~~~~~~~a~~~~~  102 (111)
T 2l6j_A           80 LQYRLELAQGAVGSVQIPVVEVD  102 (111)
T ss_dssp             HHHHHHHHHHHHHCCCCCSSSSS
T ss_pred             HHHHHHHHHHHHHhHhhhHhHHH
Confidence            66777888888887777765543

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=97.84  E-value=0.00012  Score=62.79  Aligned_cols=81  Identities=15%  Similarity=0.145  Sum_probs=44.0

Q ss_pred             hHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCcccCHHHHHHHHHHh
Q 000951          877 TQYITLINGMCRVGNFQGAFKLKDEMEALGISSSDVAESAMVRGLAHCGKVEEAMLVLNRMLRMRLVPTIATFTTLIHKF  956 (1211)
Q Consensus       877 ~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~p~~~~~~~L~~~~  956 (1211)
                      ..+..++..+...|++++|+..|+++++.. +.+..++..++.++...|++++|+..|+++++.+|. +..++..++.++
T Consensus        10 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~l~~~~   87 (91)
T 1na3_A           10 EAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN-NAEAKQNLGNAK   87 (91)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CHHHHHHHHHHH
Confidence            345555555555555555555555555442 334445555555566666666666666666555443 555555555555


Q ss_pred             hhh
Q 000951          957 CKE  959 (1211)
Q Consensus       957 ~~~  959 (1211)
                      ...
T Consensus        88 ~~~   90 (91)
T 1na3_A           88 QKQ   90 (91)
T ss_dssp             HHH
T ss_pred             Hhc
Confidence            443

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=97.84  E-value=6.2e-05  Score=68.32  Aligned_cols=81  Identities=12%  Similarity=0.031  Sum_probs=62.8

Q ss_pred             hhHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCcccCHHHHHHHHHHhhhhCCHHHHHHHHHHH
Q 000951          893 QGAFKLKDEMEALGISSSDVAESAMVRGLAHCGKVEEAMLVLNRMLRMRLVPTIATFTTLIHKFCKEAKFVDALKLKGTM  972 (1211)
Q Consensus       893 ~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~p~~~~~~~L~~~~~~~g~~~~A~~~~~~~  972 (1211)
                      ++|+..|+++++.. +.+..++..++.++...|++++|+..|+++++.+|. +..+|..++.+|...|++++|+..|+..
T Consensus         2 ~~a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~a   79 (115)
T 2kat_A            2 QAITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPT-YSVAWKWLGKTLQGQGDRAGARQAWESG   79 (115)
T ss_dssp             CCHHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            45777788877653 556777888888888888888888888888887755 7778888888888888888888887765


Q ss_pred             Hhc
Q 000951          973 ELS  975 (1211)
Q Consensus       973 ~~~  975 (1211)
                      ...
T Consensus        80 l~~   82 (115)
T 2kat_A           80 LAA   82 (115)
T ss_dssp             HHH
T ss_pred             HHh
Confidence            544

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=97.80  E-value=0.00022  Score=67.01  Aligned_cols=113  Identities=10%  Similarity=-0.043  Sum_probs=96.3

Q ss_pred             cCChhhHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCcccCHHHHHHHHHHhhh----hCCHHH
Q 000951          889 VGNFQGAFKLKDEMEALGISSSDVAESAMVRGLAHCGKVEEAMLVLNRMLRMRLVPTIATFTTLIHKFCK----EAKFVD  964 (1211)
Q Consensus       889 ~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~p~~~~~~~L~~~~~~----~g~~~~  964 (1211)
                      .+++++|++.|+++.+.| .+...    ++.+|...+..++|.+.|+++.+.+   ++.++..|+.+|..    .+++++
T Consensus         8 ~~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~   79 (138)
T 1klx_A            8 KKDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRK   79 (138)
T ss_dssp             HHHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHH
T ss_pred             ccCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHH
Confidence            357899999999999887 33332    8888888888999999999999985   78899999999998    899999


Q ss_pred             HHHHHHHHHhcCCCCchHHHHHHHHHHHh----CCChhHHHHHHHHHHHcCC
Q 000951          965 ALKLKGTMELSGVKLDVVSYNVLISGLCA----NGDVMPAFELYEEMKHKGL 1012 (1211)
Q Consensus       965 A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~g~ 1012 (1211)
                      |...|+...+.+   +..+++.|+..|..    .+++++|.+.+++..+.|.
T Consensus        80 A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~  128 (138)
T 1klx_A           80 AAQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS  128 (138)
T ss_dssp             HHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence            999998776653   56788999999998    8999999999999887653

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=97.78  E-value=0.0001  Score=63.28  Aligned_cols=83  Identities=13%  Similarity=0.086  Sum_probs=68.0

Q ss_pred             chHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCcccCHHHHHHHHHHhhhhCCHHHHHHHHHHHHhcCCCCch-HHHHHHH
Q 000951          910 SDVAESAMVRGLAHCGKVEEAMLVLNRMLRMRLVPTIATFTTLIHKFCKEAKFVDALKLKGTMELSGVKLDV-VSYNVLI  988 (1211)
Q Consensus       910 ~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~p~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~  988 (1211)
                      +...+..++..+...|++++|+..|+++++..+. +..+|..++.++...|++++|+..++.....  .|+. ..+..++
T Consensus         8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~l~   84 (91)
T 1na3_A            8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN-NAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPNNAEAKQNLG   84 (91)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--CCCCHHHHHHHH
Confidence            4567788899999999999999999999988765 7889999999999999999999998877665  6754 4777777


Q ss_pred             HHHHhCC
Q 000951          989 SGLCANG  995 (1211)
Q Consensus       989 ~~~~~~g  995 (1211)
                      .++...|
T Consensus        85 ~~~~~~g   91 (91)
T 1na3_A           85 NAKQKQG   91 (91)
T ss_dssp             HHHHHHC
T ss_pred             HHHHhcC
Confidence            7765543

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=97.60  E-value=0.00017  Score=63.32  Aligned_cols=63  Identities=10%  Similarity=0.028  Sum_probs=32.4

Q ss_pred             hHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 000951          877 TQYITLINGMCRVGNFQGAFKLKDEMEALGISSSDVAESAMVRGLAHCGKVEEAMLVLNRMLRM  940 (1211)
Q Consensus       877 ~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~  940 (1211)
                      ..+..++.++...|++++|+..|+++++.. +.+..+|..++.+|...|++++|++.|+++++.
T Consensus         8 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l   70 (100)
T 3ma5_A            8 FTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEV   70 (100)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            444555555555555555555555555442 333445555555555555555555555555543

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=97.57  E-value=0.00023  Score=62.50  Aligned_cols=67  Identities=9%  Similarity=0.068  Sum_probs=51.5

Q ss_pred             CCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCcccCHHHHHHHHHHhhhhCCHHHHHHHHHHHHhc
Q 000951          908 SSSDVAESAMVRGLAHCGKVEEAMLVLNRMLRMRLVPTIATFTTLIHKFCKEAKFVDALKLKGTMELS  975 (1211)
Q Consensus       908 ~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~p~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~  975 (1211)
                      +.+..++..++.+|...|++++|+..|+++++.+|. +..+|..++.+|...|++++|+..|+.....
T Consensus         4 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l   70 (100)
T 3ma5_A            4 PEDPFTRYALAQEHLKHDNASRALALFEELVETDPD-YVGTYYHLGKLYERLDRTDDAIDTYAQGIEV   70 (100)
T ss_dssp             -CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            445667778888888888888888888888887765 6778888888888888888888887755543

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=97.30  E-value=0.00032  Score=61.36  Aligned_cols=60  Identities=13%  Similarity=0.147  Sum_probs=29.8

Q ss_pred             HHHHHHhcCChhhHHHHHHHHHHcCCCCchH-HHHHHHHHHHhcCCHHHHHHHHHHHHhCCc
Q 000951          882 LINGMCRVGNFQGAFKLKDEMEALGISSSDV-AESAMVRGLAHCGKVEEAMLVLNRMLRMRL  942 (1211)
Q Consensus       882 l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~  942 (1211)
                      .+..+...|++++|+..|+++++.. +.+.. ++..++.++...|++++|++.|+++++.+|
T Consensus         6 ~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p   66 (99)
T 2kc7_A            6 TIKELINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNP   66 (99)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence            3444445555555555555554432 33334 455555555555555555555555555443

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=97.22  E-value=0.002  Score=73.39  Aligned_cols=91  Identities=8%  Similarity=-0.093  Sum_probs=67.2

Q ss_pred             HHHHhcCCHHHHHHHHHHHHhC-----Ccc-c-CHHHHHHHHHHhhhhCCHHHHHHHHHHHH-----hcC-CCCchH-HH
Q 000951          919 RGLAHCGKVEEAMLVLNRMLRM-----RLV-P-TIATFTTLIHKFCKEAKFVDALKLKGTME-----LSG-VKLDVV-SY  984 (1211)
Q Consensus       919 ~~~~~~g~~~eA~~~~~~~~~~-----~~~-p-~~~~~~~L~~~~~~~g~~~~A~~~~~~~~-----~~~-~~p~~~-~~  984 (1211)
                      ..+.+.|++++|+.+++++++.     ++. | ...++++|+.+|..+|+|++|+.+++...     ..| ..|+.. ++
T Consensus       295 e~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l  374 (429)
T 3qwp_A          295 EELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQV  374 (429)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHH
T ss_pred             HHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHH
Confidence            3455678888888888888763     211 1 24678889999999999999998877543     222 123433 67


Q ss_pred             HHHHHHHHhCCChhHHHHHHHHHHH
Q 000951          985 NVLISGLCANGDVMPAFELYEEMKH 1009 (1211)
Q Consensus       985 ~~l~~~~~~~g~~~~a~~~~~~~~~ 1009 (1211)
                      +.|+.+|...|++++|..++++..+
T Consensus       375 ~nLa~~~~~~g~~~eA~~~~~~Al~  399 (429)
T 3qwp_A          375 MKVGKLQLHQGMFPQAMKNLRLAFD  399 (429)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHH
Confidence            9999999999999999999998765

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=97.22  E-value=0.0055  Score=66.32  Aligned_cols=74  Identities=9%  Similarity=-0.016  Sum_probs=41.7

Q ss_pred             CCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCcccCHHHHHHHHHHhhhhCCHHHHHHHHHHHHhcCCCCchHHHH
Q 000951          908 SSSDVAESAMVRGLAHCGKVEEAMLVLNRMLRMRLVPTIATFTTLIHKFCKEAKFVDALKLKGTMELSGVKLDVVSYN  985 (1211)
Q Consensus       908 ~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~p~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~  985 (1211)
                      +.++.++..++..+...|++++|+..++++++.+  |+...|..++.++.-.|++++|.+.|+....+  +|...+|.
T Consensus       274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL--~P~~~t~~  347 (372)
T 3ly7_A          274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNL--RPGANTLY  347 (372)
T ss_dssp             TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCSHHHHH
T ss_pred             CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCcChHH
Confidence            3444455555555555566666666666666654  45555556666666666666666665544433  55544443

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=97.15  E-value=0.001  Score=75.55  Aligned_cols=86  Identities=8%  Similarity=-0.033  Sum_probs=47.5

Q ss_pred             hcchhhHHHHHHHHHH---cCCCCCh----hHHHHHHHHHHhcCChhhHHHHHHHHHHc-----CC--CCchHHHHHHHH
Q 000951          854 IAAFQESHFVLRGMAE---KGLTPKC----TQYITLINGMCRVGNFQGAFKLKDEMEAL-----GI--SSSDVAESAMVR  919 (1211)
Q Consensus       854 ~g~~~eA~~~~~~~~~---~g~~p~~----~~~~~l~~~~~~~g~~~eA~~~~~~~~~~-----~~--~~~~~~~~~l~~  919 (1211)
                      .|++++|+.++++.++   .-+.|++    .++..|+.+|..+|+|++|+.+++++++.     |.  +.....++.|+.
T Consensus       311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~  390 (433)
T 3qww_A          311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR  390 (433)
T ss_dssp             TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred             ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence            4566777777776664   2223332    56677777777777777777777766421     10  111223445555


Q ss_pred             HHHhcCCHHHHHHHHHHHHh
Q 000951          920 GLAHCGKVEEAMLVLNRMLR  939 (1211)
Q Consensus       920 ~~~~~g~~~eA~~~~~~~~~  939 (1211)
                      +|..+|++++|+.+|+++++
T Consensus       391 ~~~~qg~~~eA~~~~~~Al~  410 (433)
T 3qww_A          391 LYMGLENKAAGEKALKKAIA  410 (433)
T ss_dssp             HHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHhccCHHHHHHHHHHHHH
Confidence            55555555555555555443

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=97.11  E-value=0.041  Score=56.91  Aligned_cols=93  Identities=12%  Similarity=0.102  Sum_probs=72.1

Q ss_pred             chhhHHHHHHHHHHcCCCCCh---hHHHHHHHHHHhc-----CChhhHHHHHHHHHHcCCCCchHHHHHHHHHHHhc-CC
Q 000951          856 AFQESHFVLRGMAEKGLTPKC---TQYITLINGMCRV-----GNFQGAFKLKDEMEALGISSSDVAESAMVRGLAHC-GK  926 (1211)
Q Consensus       856 ~~~eA~~~~~~~~~~g~~p~~---~~~~~l~~~~~~~-----g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~  926 (1211)
                      ...+|..+++++++  ++|+.   ..|..++..|...     |+.++|.++|+++++.+...+..++...++.+++. |+
T Consensus       178 ~l~~A~a~lerAle--LDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd  255 (301)
T 3u64_A          178 TVHAAVMMLERACD--LWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNN  255 (301)
T ss_dssp             HHHHHHHHHHHHHH--HCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTC
T ss_pred             hHHHHHHHHHHHHH--hCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCC
Confidence            35678888888888  88873   6788888888884     89999999999998874323477778888888874 88


Q ss_pred             HHHHHHHHHHHHhCCcc--cCHHHHH
Q 000951          927 VEEAMLVLNRMLRMRLV--PTIATFT  950 (1211)
Q Consensus       927 ~~eA~~~~~~~~~~~~~--p~~~~~~  950 (1211)
                      .++|.+.+++++..++.  |+....+
T Consensus       256 ~~~a~~~L~kAL~a~p~~~P~~~lan  281 (301)
T 3u64_A          256 RAGFDEALDRALAIDPESVPHNKLLV  281 (301)
T ss_dssp             HHHHHHHHHHHHHCCGGGCSSCHHHH
T ss_pred             HHHHHHHHHHHHcCCCCCCCChhHHH
Confidence            99999999999988877  5544433

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=97.08  E-value=0.056  Score=55.90  Aligned_cols=85  Identities=12%  Similarity=-0.000  Sum_probs=69.9

Q ss_pred             HHHHHHHHHHHHhCCccc-CHHHHHHHHHHhhh-----hCCHHHHHHHHHHHHhcCCCCc--hHHHHHHHHHHHhC-CCh
Q 000951          927 VEEAMLVLNRMLRMRLVP-TIATFTTLIHKFCK-----EAKFVDALKLKGTMELSGVKLD--VVSYNVLISGLCAN-GDV  997 (1211)
Q Consensus       927 ~~eA~~~~~~~~~~~~~p-~~~~~~~L~~~~~~-----~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~-g~~  997 (1211)
                      ..+|...++++++.+|.- +..+|..||..|..     -|+.++|.+.|++..++  .|+  ..+++..+..|+.. |+.
T Consensus       179 l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~L--nP~~~id~~v~YA~~l~~~~gd~  256 (301)
T 3u64_A          179 VHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRY--CSAHDPDHHITYADALCIPLNNR  256 (301)
T ss_dssp             HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHH--CCTTCSHHHHHHHHHTTTTTTCH
T ss_pred             HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHh--CCCCCchHHHHHHHHHHHhcCCH
Confidence            678899999999987542 35789999999988     49999999999977766  884  56888888988874 999


Q ss_pred             hHHHHHHHHHHHcCCc
Q 000951          998 MPAFELYEEMKHKGLC 1013 (1211)
Q Consensus       998 ~~a~~~~~~~~~~g~~ 1013 (1211)
                      +++.+.+++.+.....
T Consensus       257 ~~a~~~L~kAL~a~p~  272 (301)
T 3u64_A          257 AGFDEALDRALAIDPE  272 (301)
T ss_dssp             HHHHHHHHHHHHCCGG
T ss_pred             HHHHHHHHHHHcCCCC
Confidence            9999999999875444

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=97.05  E-value=0.0052  Score=66.53  Aligned_cols=67  Identities=12%  Similarity=-0.043  Sum_probs=57.2

Q ss_pred             ChhHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCcc
Q 000951          875 KCTQYITLINGMCRVGNFQGAFKLKDEMEALGISSSDVAESAMVRGLAHCGKVEEAMLVLNRMLRMRLV  943 (1211)
Q Consensus       875 ~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~  943 (1211)
                      +..+|..++..+...|++++|...+++++..+  |+...|..++.++.-.|++++|.+.|++++.++|.
T Consensus       276 ~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~  342 (372)
T 3ly7_A          276 LSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPG  342 (372)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCS
T ss_pred             CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence            45778777777777899999999999999875  67777888899999999999999999999998754

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=97.04  E-value=0.0039  Score=70.93  Aligned_cols=89  Identities=12%  Similarity=0.030  Sum_probs=48.0

Q ss_pred             HHhhcchhhHHHHHHHHHHc---CCCCCh----hHHHHHHHHHHhcCChhhHHHHHHHHHHc-----CC--CCchHHHHH
Q 000951          851 LKRIAAFQESHFVLRGMAEK---GLTPKC----TQYITLINGMCRVGNFQGAFKLKDEMEAL-----GI--SSSDVAESA  916 (1211)
Q Consensus       851 ~~~~g~~~eA~~~~~~~~~~---g~~p~~----~~~~~l~~~~~~~g~~~eA~~~~~~~~~~-----~~--~~~~~~~~~  916 (1211)
                      +.++|++++|+.+++++++.   -+.|++    .++..|+.+|..+|+|++|+.+++++++.     |.  +.....++.
T Consensus       297 ~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~n  376 (429)
T 3qwp_A          297 LKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMK  376 (429)
T ss_dssp             HHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHH
T ss_pred             HHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHH
Confidence            34556666666666666641   122322    55666666777777777777776666421     10  111223455


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHh
Q 000951          917 MVRGLAHCGKVEEAMLVLNRMLR  939 (1211)
Q Consensus       917 l~~~~~~~g~~~eA~~~~~~~~~  939 (1211)
                      |+.+|...|++++|+.+|+++++
T Consensus       377 La~~~~~~g~~~eA~~~~~~Al~  399 (429)
T 3qwp_A          377 VGKLQLHQGMFPQAMKNLRLAFD  399 (429)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHhcCCHHHHHHHHHHHHH
Confidence            55555555555555555555544

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=96.99  E-value=0.0035  Score=53.63  Aligned_cols=70  Identities=16%  Similarity=0.116  Sum_probs=49.5

Q ss_pred             CCchHHHHHHHHHHHhcCC---HHHHHHHHHHHHhCCcccCHHHHHHHHHHhhhhCCHHHHHHHHHHHHhcCCCCc
Q 000951          908 SSSDVAESAMVRGLAHCGK---VEEAMLVLNRMLRMRLVPTIATFTTLIHKFCKEAKFVDALKLKGTMELSGVKLD  980 (1211)
Q Consensus       908 ~~~~~~~~~l~~~~~~~g~---~~eA~~~~~~~~~~~~~p~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~p~  980 (1211)
                      ++++.++..++.++...++   .++|..+++++++.+|. ++.++..+|..+.+.|++++|+..|+.+.+.  .|+
T Consensus         3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~-~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~--~p~   75 (93)
T 3bee_A            3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPY-NEAALSLIANDHFISFRFQEAIDTWVLLLDS--NDP   75 (93)
T ss_dssp             CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC--CCT
T ss_pred             CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCC
Confidence            4566667777766654433   67778888888777766 7777777777788888888888877776655  554

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=96.97  E-value=0.0023  Score=72.62  Aligned_cols=85  Identities=5%  Similarity=-0.074  Sum_probs=53.8

Q ss_pred             CcHHHHHHHHHHHHH---CCCCCC----hhhHHHHHHHHHhhcchhhHHHHHHHHHH-----cCC-CCCh-hHHHHHHHH
Q 000951          820 GEMGKAFDLFNIMNM---LGVVPD----TNTQDAIIMGLKRIAAFQESHFVLRGMAE-----KGL-TPKC-TQYITLING  885 (1211)
Q Consensus       820 g~~~~A~~~~~~~~~---~~~~~~----~~~~~~l~~~~~~~g~~~eA~~~~~~~~~-----~g~-~p~~-~~~~~l~~~  885 (1211)
                      |++++|++++++.++   .-+.|+    ..++++|+.+|...|++++|+.+++++++     .|- .|+. .+++.|+.+
T Consensus       312 g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~  391 (433)
T 3qww_A          312 KSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRL  391 (433)
T ss_dssp             SCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHH
Confidence            455555555555543   111222    34566666666666666666666666663     221 2332 778899999


Q ss_pred             HHhcCChhhHHHHHHHHHH
Q 000951          886 MCRVGNFQGAFKLKDEMEA  904 (1211)
Q Consensus       886 ~~~~g~~~eA~~~~~~~~~  904 (1211)
                      |..+|++++|..+|+++++
T Consensus       392 ~~~qg~~~eA~~~~~~Al~  410 (433)
T 3qww_A          392 YMGLENKAAGEKALKKAIA  410 (433)
T ss_dssp             HHHTTCHHHHHHHHHHHHH
T ss_pred             HHhccCHHHHHHHHHHHHH
Confidence            9999999999999888864

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=96.85  E-value=0.0042  Score=53.97  Aligned_cols=64  Identities=17%  Similarity=0.197  Sum_probs=55.5

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhCCcccCHH-HHHHHHHHhhhhCCHHHHHHHHHHHHhcCCCCchH
Q 000951          916 AMVRGLAHCGKVEEAMLVLNRMLRMRLVPTIA-TFTTLIHKFCKEAKFVDALKLKGTMELSGVKLDVV  982 (1211)
Q Consensus       916 ~l~~~~~~~g~~~eA~~~~~~~~~~~~~p~~~-~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~  982 (1211)
                      ..+..+...|++++|+..|+++++..|. +.. +|..++.+|...|++++|+..|+.....  .|+..
T Consensus         5 ~~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~   69 (99)
T 2kc7_A            5 KTIKELINQGDIENALQALEEFLQTEPV-GKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL--NPDSP   69 (99)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHHCSS-THHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTST
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCcH
Confidence            3567788999999999999999998766 788 9999999999999999999999877766  77554

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=96.64  E-value=0.0095  Score=55.31  Aligned_cols=83  Identities=12%  Similarity=0.058  Sum_probs=43.7

Q ss_pred             hHHHHHHHHHHcCCCCChhHHHHHHHHHHhcC---ChhhHHHHHHHHHHcCCCC--chHHHHHHHHHHHhcCCHHHHHHH
Q 000951          859 ESHFVLRGMAEKGLTPKCTQYITLINGMCRVG---NFQGAFKLKDEMEALGISS--SDVAESAMVRGLAHCGKVEEAMLV  933 (1211)
Q Consensus       859 eA~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g---~~~eA~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~eA~~~  933 (1211)
                      .+...|.+..+.|. ++..+...++.++.+.+   +.++|+.+++.+.+.. .|  ....++.++.++.+.|++++|++.
T Consensus        16 ~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~~y   93 (152)
T 1pc2_A           16 KFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALKY   93 (152)
T ss_dssp             HHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHHHH
T ss_pred             HHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHHHH
Confidence            34444444444222 34455555555665555   3445666666655442 12  344555556666666666666666


Q ss_pred             HHHHHhCCcc
Q 000951          934 LNRMLRMRLV  943 (1211)
Q Consensus       934 ~~~~~~~~~~  943 (1211)
                      ++++++..|.
T Consensus        94 ~~~lL~ieP~  103 (152)
T 1pc2_A           94 VRGLLQTEPQ  103 (152)
T ss_dssp             HHHHHHHCTT
T ss_pred             HHHHHhcCCC
Confidence            6666665443

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=96.49  E-value=0.01  Score=55.11  Aligned_cols=86  Identities=8%  Similarity=-0.041  Sum_probs=49.1

Q ss_pred             HHHHHHHHHHHHhCCcccCHHHHHHHHHHhhhhC---CHHHHHHHHHHHHhcCCCC-c-hHHHHHHHHHHHhCCChhHHH
Q 000951          927 VEEAMLVLNRMLRMRLVPTIATFTTLIHKFCKEA---KFVDALKLKGTMELSGVKL-D-VVSYNVLISGLCANGDVMPAF 1001 (1211)
Q Consensus       927 ~~eA~~~~~~~~~~~~~p~~~~~~~L~~~~~~~g---~~~~A~~~~~~~~~~~~~p-~-~~~~~~l~~~~~~~g~~~~a~ 1001 (1211)
                      +..+.+.|++..+.++ ++..+...+++++.+.+   ++++|+.+++...... .| + ...++.++-+|.+.|++++|.
T Consensus        14 l~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~   91 (152)
T 1pc2_A           14 LLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKAL   91 (152)
T ss_dssp             HHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred             HHHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHH
Confidence            3445555555555544 36666666666666655   4456666666555441 14 2 235566666666666666666


Q ss_pred             HHHHHHHHcCCccCh
Q 000951         1002 ELYEEMKHKGLCPNS 1016 (1211)
Q Consensus      1002 ~~~~~~~~~g~~p~~ 1016 (1211)
                      +.++..++  +.|+.
T Consensus        92 ~y~~~lL~--ieP~n  104 (152)
T 1pc2_A           92 KYVRGLLQ--TEPQN  104 (152)
T ss_dssp             HHHHHHHH--HCTTC
T ss_pred             HHHHHHHh--cCCCC
Confidence            66666655  45544

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=96.34  E-value=0.099  Score=65.84  Aligned_cols=45  Identities=13%  Similarity=0.130  Sum_probs=25.3

Q ss_pred             HhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHHH
Q 000951          782 CETGMLEVGFKFLKKMIAEGTMVDCFTFNVLMRKCCEAGEMGKAFDLFNIM  832 (1211)
Q Consensus       782 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~  832 (1211)
                      ...|++++|.++.+.+      .+...|..++..+.+.|+++.|.+.|.++
T Consensus       663 l~~~~~~~A~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~  707 (814)
T 3mkq_A          663 LKVGQLTLARDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNA  707 (814)
T ss_dssp             HHHTCHHHHHHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             hhcCCHHHHHHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence            3456666666554321      24455666666666666666666666554

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=96.34  E-value=0.026  Score=49.43  Aligned_cols=62  Identities=8%  Similarity=0.059  Sum_probs=27.7

Q ss_pred             HHHHHHHHhcCChhhHHHHHHHHHHcC------CCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 000951          880 ITLINGMCRVGNFQGAFKLKDEMEALG------ISSSDVAESAMVRGLAHCGKVEEAMLVLNRMLRMR  941 (1211)
Q Consensus       880 ~~l~~~~~~~g~~~eA~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~  941 (1211)
                      ..++..+...|+++.|...|+.+++..      -.+...++..++.++.+.|++++|+..++++++..
T Consensus         9 ~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~   76 (104)
T 2v5f_A            9 FELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELD   76 (104)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Confidence            344444444444444444444443210      01223344445555555555555555555555444

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=96.23  E-value=0.071  Score=67.16  Aligned_cols=129  Identities=19%  Similarity=0.157  Sum_probs=72.0

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc
Q 000951          670 TCLVDGLFKAGQSKAAMHISKIMDKEGVYPDTIAFNAVMDGFSRMGNMMMANDLLSTMRSRKLCPSLATYNILLHGYSKK  749 (1211)
Q Consensus       670 ~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~  749 (1211)
                      ..++..+.+.|.+++|.++.+         +..   .-.......|++++|.++.+.+      .+...|..|+..+.+.
T Consensus       633 ~~~~~~l~~~~~~~~a~~~~~---------~~~---~~f~~~l~~~~~~~A~~~~~~~------~~~~~W~~la~~al~~  694 (814)
T 3mkq_A          633 TKIARFLEGQEYYEEALNISP---------DQD---QKFELALKVGQLTLARDLLTDE------SAEMKWRALGDASLQR  694 (814)
T ss_dssp             HHHHHHHHHTTCHHHHHHHCC---------CHH---HHHHHHHHHTCHHHHHHHHTTC------CCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHhCCChHHheecCC---------Ccc---hheehhhhcCCHHHHHHHHHhh------CcHhHHHHHHHHHHHc
Confidence            445555566666666665432         111   1122345567777777764432      2567778888888888


Q ss_pred             CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCcHHHHHHHH
Q 000951          750 KDLLMCSMLLNTMKMEGLLPDKLTCHSLILGFCETGMLEVGFKFLKKMIAEGTMVDCFTFNVLMRKCCEAGEMGKAFDLF  829 (1211)
Q Consensus       750 g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~  829 (1211)
                      |+++.|.+.|.++.+         |..+...|...|+.+...++.+.+...|      -++.-..+|.+.|++++|+++|
T Consensus       695 ~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~~~------~~~~A~~~~~~~g~~~~a~~~~  759 (814)
T 3mkq_A          695 FNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAETTG------KFNLAFNAYWIAGDIQGAKDLL  759 (814)
T ss_dssp             TCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHH
T ss_pred             CCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHHcC------chHHHHHHHHHcCCHHHHHHHH
Confidence            888888887777643         2234444555666666555555444432      1222233455566666666555


Q ss_pred             HH
Q 000951          830 NI  831 (1211)
Q Consensus       830 ~~  831 (1211)
                      .+
T Consensus       760 ~~  761 (814)
T 3mkq_A          760 IK  761 (814)
T ss_dssp             HH
T ss_pred             HH
Confidence            33

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=96.16  E-value=0.03  Score=49.04  Aligned_cols=72  Identities=10%  Similarity=-0.001  Sum_probs=58.4

Q ss_pred             CchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC------cccCHHHHHHHHHHhhhhCCHHHHHHHHHHHHhcCCCCchH
Q 000951          909 SSDVAESAMVRGLAHCGKVEEAMLVLNRMLRMR------LVPTIATFTTLIHKFCKEAKFVDALKLKGTMELSGVKLDVV  982 (1211)
Q Consensus       909 ~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~------~~p~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~  982 (1211)
                      .+...+..||..+.+.|+++.|...|+++++..      ..+...++..|+.++.+.|++++|+..++.....  .|+..
T Consensus         3 Lsa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l--~P~~~   80 (104)
T 2v5f_A            3 LTAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL--DPEHQ   80 (104)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCH
T ss_pred             CCHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc--CCCCH
Confidence            355667889999999999999999999998742      1125678899999999999999999998876665  78654

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=95.92  E-value=0.04  Score=46.91  Aligned_cols=49  Identities=14%  Similarity=0.020  Sum_probs=25.2

Q ss_pred             hhhHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 000951          892 FQGAFKLKDEMEALGISSSDVAESAMVRGLAHCGKVEEAMLVLNRMLRMR  941 (1211)
Q Consensus       892 ~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~  941 (1211)
                      .++|..+++++++.. +.+..++..++..+...|++++|+..|+++++.+
T Consensus        25 ~~~A~~~l~~AL~~d-p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~   73 (93)
T 3bee_A           25 TDEVSLLLEQALQLE-PYNEAALSLIANDHFISFRFQEAIDTWVLLLDSN   73 (93)
T ss_dssp             CHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCC
T ss_pred             CHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence            345555555555442 3344445555555555555555555555555544

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=95.38  E-value=0.44  Score=45.40  Aligned_cols=101  Identities=14%  Similarity=0.110  Sum_probs=65.7

Q ss_pred             HHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHH
Q 000951          711 FSRMGNMMMANDLLSTMRSRKLCPSLATYNILLHGYSKKKDLLMCSMLLNTMKMEGLLPDKLTCHSLILGFCETGMLEVG  790 (1211)
Q Consensus       711 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A  790 (1211)
                      ....|+++.|.++.+.+.      +...|..|+......|+++-|.+.|.+..+         +..+.-.|.-.|+.+.-
T Consensus        15 AL~lg~l~~A~e~a~~l~------~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L   79 (177)
T 3mkq_B           15 ALEYGNLDAALDEAKKLN------DSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKL   79 (177)
T ss_dssp             HHHTTCHHHHHHHHHHHC------CHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHH
T ss_pred             HHhcCCHHHHHHHHHHhC------CHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHH
Confidence            446788888877766652      577788888888888888888888877653         22344455666777666


Q ss_pred             HHHHHHHHHcCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHHH
Q 000951          791 FKFLKKMIAEGTMVDCFTFNVLMRKCCEAGEMGKAFDLFNIM  832 (1211)
Q Consensus       791 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~  832 (1211)
                      .++-+.+...|      -++.-..++.-.|++++++++|.+.
T Consensus        80 ~kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~~  115 (177)
T 3mkq_B           80 SKMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAEG  115 (177)
T ss_dssp             HHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred             HHHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHHC
Confidence            65555555433      2344444566677777777777543

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=95.31  E-value=0.13  Score=45.89  Aligned_cols=85  Identities=11%  Similarity=0.012  Sum_probs=45.3

Q ss_pred             hhHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChhh---HHHHHHHHHHcCCC-CchHHHHHHHHHHHhcCCHHHHHHH
Q 000951          858 QESHFVLRGMAEKGLTPKCTQYITLINGMCRVGNFQG---AFKLKDEMEALGIS-SSDVAESAMVRGLAHCGKVEEAMLV  933 (1211)
Q Consensus       858 ~eA~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~e---A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~eA~~~  933 (1211)
                      ..+...|.+....|. |+..+-..++.++.+..+..+   ++.+++.+...+.+ ......+.++.++.+.|++++|++.
T Consensus        18 ~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~   96 (126)
T 1nzn_A           18 LKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKY   96 (126)
T ss_dssp             HHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHH
Confidence            344444444444332 455555666666666655544   66666665543211 1333445556666666666666666


Q ss_pred             HHHHHhCCcc
Q 000951          934 LNRMLRMRLV  943 (1211)
Q Consensus       934 ~~~~~~~~~~  943 (1211)
                      ++.+++..|.
T Consensus        97 ~~~lL~~eP~  106 (126)
T 1nzn_A           97 VRGLLQTEPQ  106 (126)
T ss_dssp             HHHHHHHCTT
T ss_pred             HHHHHHhCCC
Confidence            6666665543

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=94.81  E-value=0.45  Score=43.38  Aligned_cols=57  Identities=12%  Similarity=0.056  Sum_probs=46.0

Q ss_pred             hcCChhhHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCcccC
Q 000951          888 RVGNFQGAFKLKDEMEALGISSSDVAESAMVRGLAHCGKVEEAMLVLNRMLRMRLVPT  945 (1211)
Q Consensus       888 ~~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~p~  945 (1211)
                      ..++.++|.++|+.+++. .+.-..+|-..+.--.++|++..|.+++.+++.+++.|.
T Consensus        72 ei~D~d~aR~vy~~a~~~-hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~  128 (161)
T 4h7y_A           72 AIQEPDDARDYFQMARAN-CKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPL  128 (161)
T ss_dssp             HHHCGGGCHHHHHHHHHH-CTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCH
T ss_pred             HhcCHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcH
Confidence            447888999999998765 344477777777777889999999999999999988753

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=94.07  E-value=0.4  Score=42.70  Aligned_cols=67  Identities=12%  Similarity=0.051  Sum_probs=29.9

Q ss_pred             CchHHHHHHHHHHHhcCCHHH---HHHHHHHHHhCC-cccCHHHHHHHHHHhhhhCCHHHHHHHHHHHHhc
Q 000951          909 SSDVAESAMVRGLAHCGKVEE---AMLVLNRMLRMR-LVPTIATFTTLIHKFCKEAKFVDALKLKGTMELS  975 (1211)
Q Consensus       909 ~~~~~~~~l~~~~~~~g~~~e---A~~~~~~~~~~~-~~p~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~  975 (1211)
                      ++..+-..+++++.+..+..+   ++.+++.+++.+ |.-.......|+-++.+.|+|++|...++.+...
T Consensus        33 ~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~  103 (126)
T 1nzn_A           33 VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQT  103 (126)
T ss_dssp             CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence            444444444444544444332   555555544433 1112334444455555555555555554444433

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N

Probab=94.04  E-value=15  Score=44.99  Aligned_cols=257  Identities=14%  Similarity=0.078  Sum_probs=123.4

Q ss_pred             HHHcCCCHHHHHHHHHHhhhCC--CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC-------CCCHHHHHHHHHH
Q 000951          569 GLCKGGNLKEAKRFLNSLHHIP--SAVDTVAYNTILAETCKSGNLWEAIVLLDEMVQFNL-------LPDRYTYTILLAG  639 (1211)
Q Consensus       569 ~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-------~p~~~~~~~li~~  639 (1211)
                      +....|+.+++..++...+..+  ..+....-..+.-+....|..+++...+...+...-       .+....-.++.-+
T Consensus       383 GlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLG  462 (963)
T 4ady_A          383 GVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIG  462 (963)
T ss_dssp             HHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHH
T ss_pred             hhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHH
Confidence            4556677777777776655422  122233444455556666665677777766654321       0112222333334


Q ss_pred             HHhCCC-hHHHHHHHHHHHHcCCCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH--HHhc
Q 000951          640 LCRKGK-VVSALLFFEKVVSKRTFSPNN--VMFTCLVDGLFKAGQSKAAMHISKIMDKEGVYPDTIAFNAVMDG--FSRM  714 (1211)
Q Consensus       640 ~~~~g~-~~~A~~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~--~~~~  714 (1211)
                      +.-.|. -+++.+.+..++...  .+..  ..-.+|.-.+.-.|+.+....++..+.+.   .+..+...+..+  +.-.
T Consensus       463 la~~GS~~eev~e~L~~~L~dd--~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~---~~e~vrR~aalgLGll~~  537 (963)
T 4ady_A          463 LAAMGSANIEVYEALKEVLYND--SATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQET---QHGNITRGLAVGLALINY  537 (963)
T ss_dssp             HHSTTCCCHHHHHHHHHHHHTC--CHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHC---SCHHHHHHHHHHHHHHTT
T ss_pred             HHhcCCCCHHHHHHHHHHHhcC--CHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhcc---CcHHHHHHHHHHHHhhhC
Confidence            443443 245666666666533  1111  12223344455667766666666666543   233333333333  3356


Q ss_pred             CChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 000951          715 GNMMMANDLLSTMRSRKLCPSL--ATYNILLHGYSKKKDLLMCSMLLNTMKMEGLLPDKLTCHSLILGFCETGMLEVGFK  792 (1211)
Q Consensus       715 g~~~~A~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~  792 (1211)
                      |+.+.+..+++.+... ..|..  ..-.+++-+|+..|+.....+++..+... ...+......+.-+....|+.+.+.+
T Consensus       538 g~~e~~~~li~~L~~~-~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d-~~d~VRraAViaLGlI~~g~~e~v~r  615 (963)
T 4ady_A          538 GRQELADDLITKMLAS-DESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSD-SNDDVRRAAVIALGFVLLRDYTTVPR  615 (963)
T ss_dssp             TCGGGGHHHHHHHHHC-SCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHC-SCHHHHHHHHHHHHHHTSSSCSSHHH
T ss_pred             CChHHHHHHHHHHHhC-CCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccC-CcHHHHHHHHHHHHhhccCCHHHHHH
Confidence            7777777777777653 12211  11223455677777766555577776652 11122222222233334555555555


Q ss_pred             HHHHHHHcCCCCCHhhHHHHHHHHHhcCcH-HHHHHHHHHHH
Q 000951          793 FLKKMIAEGTMVDCFTFNVLMRKCCEAGEM-GKAFDLFNIMN  833 (1211)
Q Consensus       793 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~  833 (1211)
                      +++.+... ..|.......+.-+....|+. .++++.+..+.
T Consensus       616 lv~~L~~~-~d~~VR~gAalALGli~aGn~~~~aid~L~~L~  656 (963)
T 4ady_A          616 IVQLLSKS-HNAHVRCGTAFALGIACAGKGLQSAIDVLDPLT  656 (963)
T ss_dssp             HTTTGGGC-SCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHH
T ss_pred             HHHHHHhc-CCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHc
Confidence            55444432 223222222222222223332 46666666665

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=94.04  E-value=0.62  Score=42.44  Aligned_cols=103  Identities=15%  Similarity=0.049  Sum_probs=67.1

Q ss_pred             CHHHHHHHHHHHHccCCh------HHHHHHHHHHHHCCCCCCHH----HHHHHH---HHHHhcCChHHHHHHHHHHHHcC
Q 000951          735 SLATYNILLHGYSKKKDL------LMCSMLLNTMKMEGLLPDKL----TCHSLI---LGFCETGMLEVGFKFLKKMIAEG  801 (1211)
Q Consensus       735 ~~~~~~~l~~~~~~~g~~------~~A~~~~~~~~~~g~~p~~~----~~~~l~---~~~~~~g~~~~A~~~~~~~~~~~  801 (1211)
                      |..+|...+....+.|++      ++.+++|+++... ++|+..    .|..+-   -.+...++.++|.++|+.++.. 
T Consensus        12 ~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~-   89 (161)
T 4h7y_A           12 NPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARAN-   89 (161)
T ss_dssp             SHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHH-
T ss_pred             CHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH-
Confidence            778888888777777887      7778888887774 555421    111111   1223447888888888888764 


Q ss_pred             CCCCHhhHHHHHHHHHhcCcHHHHHHHHHHHHHCCCCC
Q 000951          802 TMVDCFTFNVLMRKCCEAGEMGKAFDLFNIMNMLGVVP  839 (1211)
Q Consensus       802 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~  839 (1211)
                      .+.=..+|.....--.++|++..|.+++.+++..+..|
T Consensus        90 hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~  127 (161)
T 4h7y_A           90 CKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP  127 (161)
T ss_dssp             CTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC
T ss_pred             hHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc
Confidence            22124555556666667888888888888887766444

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=93.76  E-value=0.77  Score=43.72  Aligned_cols=46  Identities=15%  Similarity=0.140  Sum_probs=23.9

Q ss_pred             HhcCcHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhcchhhHHHHHHHHH
Q 000951          817 CEAGEMGKAFDLFNIMNMLGVVPDTNTQDAIIMGLKRIAAFQESHFVLRGMA  868 (1211)
Q Consensus       817 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~  868 (1211)
                      ..+|+++.|.++.+++      .+...|..|+.....+|+++-|+..|.+.-
T Consensus        16 L~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~   61 (177)
T 3mkq_B           16 LEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQH   61 (177)
T ss_dssp             HHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTT
T ss_pred             HhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhC
Confidence            3455555555554443      234455555555555555555555555543

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=93.34  E-value=0.4  Score=44.75  Aligned_cols=56  Identities=4%  Similarity=0.020  Sum_probs=26.9

Q ss_pred             HHHHHhhcchhhHHHHHHHHHHc-CCCCCh-------hHHHHHHHHHHhcCChhhHHHHHHHHH
Q 000951          848 IMGLKRIAAFQESHFVLRGMAEK-GLTPKC-------TQYITLINGMCRVGNFQGAFKLKDEME  903 (1211)
Q Consensus       848 ~~~~~~~g~~~eA~~~~~~~~~~-g~~p~~-------~~~~~l~~~~~~~g~~~eA~~~~~~~~  903 (1211)
                      +..+...|.++.|+.+.+.++.. +.+|+.       .++..+++++...|++..|...|++++
T Consensus        27 ik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qAL   90 (167)
T 3ffl_A           27 VRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMAL   90 (167)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence            34444555555555555554431 112221       244455555555555555555555553

>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}

Probab=92.51  E-value=13  Score=39.59  Aligned_cols=81  Identities=10%  Similarity=-0.057  Sum_probs=42.1

Q ss_pred             CChhhHHHHHHHHHhhcchhhHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCchHHHHHHH
Q 000951          839 PDTNTQDAIIMGLKRIAAFQESHFVLRGMAEKGLTPKCTQYITLINGMCRVGNFQGAFKLKDEMEALGISSSDVAESAMV  918 (1211)
Q Consensus       839 ~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~  918 (1211)
                      -|+.....++..|.+.+++.+|...|-    .|.++....+..++.-+...+...++--+.-               ..+
T Consensus       134 Gdp~LH~~ig~~~~~e~~~~~Ae~H~i----lg~~~s~~~~a~mL~ew~~~~~~~e~dlfia---------------RaV  194 (336)
T 3lpz_A          134 GDPELHHVVGTLYVEEGEFEAAEKHLV----LGTKESPEVLARMEYEWYKQDESHTAPLYCA---------------RAV  194 (336)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHT----TSCTTHHHHHHHHHHHHHHTSCGGGHHHHHH---------------HHH
T ss_pred             CCHHHHHHHHHHHHccCCHHHHHHHHH----hcCCchHHHHHHHHHHHHHhcCCccHHHHHH---------------HHH
Confidence            356666677777777777777776662    1333333445444444433332222222211               223


Q ss_pred             HHHHhcCCHHHHHHHHHHHH
Q 000951          919 RGLAHCGKVEEAMLVLNRML  938 (1211)
Q Consensus       919 ~~~~~~g~~~eA~~~~~~~~  938 (1211)
                      -.|.-.++...|..+++...
T Consensus       195 L~yL~l~n~~~A~~~~~~f~  214 (336)
T 3lpz_A          195 LPYLLVANVRAANTAYRIFT  214 (336)
T ss_dssp             HHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHhCCHHHHHHHHHHHH
Confidence            34556677777777655544

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N

Probab=91.64  E-value=31  Score=42.29  Aligned_cols=26  Identities=19%  Similarity=0.248  Sum_probs=17.9

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHH
Q 000951          353 YGALLNGFCKHAKFDLARSLLERMRT  378 (1211)
Q Consensus       353 ~~~ll~~~~~~g~~~~a~~l~~~~~~  378 (1211)
                      |..+++...+.++.+.+.++|..+.+
T Consensus       233 y~~a~~~ai~LnD~~li~~if~~l~~  258 (963)
T 4ady_A          233 YLTLNKVVVNLNDAGLALQLFKKLKE  258 (963)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            55566666677777777777777664

>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A

Probab=91.60  E-value=0.00041  Score=75.83  Aligned_cols=203  Identities=10%  Similarity=0.067  Sum_probs=92.9

Q ss_pred             HHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHH
Q 000951          736 LATYNILLHGYSKKKDLLMCSMLLNTMKMEGLLPDKLTCHSLILGFCETGMLEVGFKFLKKMIAEGTMVDCFTFNVLMRK  815 (1211)
Q Consensus       736 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~  815 (1211)
                      +..|..|+.++...+...+|++.|-++.      |+..|..++.+..+.|.+++-++++..+.+.  ..++.+-+.|+.+
T Consensus        54 p~VWs~LgkAqL~~~~v~eAIdsyIkA~------Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~--~ke~~IDteLi~a  125 (624)
T 3lvg_A           54 PAVWSQLAKAQLQKGMVKEAIDSYIKAD------DPSSYMEVVQAANTSGNWEELVKYLQMARKK--ARESYVETELIFA  125 (624)
T ss_dssp             CCCSSSHHHHTTTSSSCTTTTTSSCCCS------CCCSSSHHHHHTTTSSCCTTHHHHHHTTSTT--CCSTTTTHHHHHH
T ss_pred             ccHHHHHHHHHHccCchHHHHHHHHhCC------ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccHHHHHHH
Confidence            3345555555555555555544432111      2233444445555555555555555444432  2233344455555


Q ss_pred             HHhcCcHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhcchhhHHHHHHHHHH-------------------cCCC-CC
Q 000951          816 CCEAGEMGKAFDLFNIMNMLGVVPDTNTQDAIIMGLKRIAAFQESHFVLRGMAE-------------------KGLT-PK  875 (1211)
Q Consensus       816 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~-------------------~g~~-p~  875 (1211)
                      |++.+++.+-.+..       -.|+..-....++-|...|.++.|..+|..+..                   ...+ -+
T Consensus       126 yAk~~rL~elEefl-------~~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns  198 (624)
T 3lvg_A          126 LAKTNRLAELEEFI-------NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANS  198 (624)
T ss_dssp             HHTSCSSSTTTSTT-------SCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCS
T ss_pred             HHhhCcHHHHHHHH-------cCCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            55555544432221       124444444455555555555555544443221                   0011 12


Q ss_pred             hhHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCcccCHHHHHHHHHH
Q 000951          876 CTQYITLINGMCRVGNFQGAFKLKDEMEALGISSSDVAESAMVRGLAHCGKVEEAMLVLNRMLRMRLVPTIATFTTLIHK  955 (1211)
Q Consensus       876 ~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~p~~~~~~~L~~~  955 (1211)
                      ..+|-.+..+|...+.+.-|...--.++-+.     ..+..++..|...|.++|-+.+++..+...- ....++.-|+-.
T Consensus       199 ~ktWKeV~~ACvd~~EfrLAqicGLniIvha-----deL~elv~~YE~~G~f~ELIsLlEaglglEr-AHmGmFTELaIL  272 (624)
T 3lvg_A          199 TRTWKEVCFACVDGKEFRLAQMCGLHIVVHA-----DELEELINYYQDRGYFEELITMLEAALGLER-AHMGMFTELAIL  272 (624)
T ss_dssp             SCSHHHHTHHHHHSCTTTTTTHHHHHHHCCS-----SCCSGGGSSSSTTCCCTTSTTTHHHHTTSTT-CCHHHHHHHHHH
T ss_pred             hhHHHHHHHHHhCchHHHHHHHhcchhcccH-----HHHHHHHHHHHhCCCHHHHHHHHHHHhCCCc-hhHHHHHHHHHH
Confidence            3456666666666666555544433333111     1112234455666666666666666654321 244555555555


Q ss_pred             hhhh
Q 000951          956 FCKE  959 (1211)
Q Consensus       956 ~~~~  959 (1211)
                      |.+-
T Consensus       273 YsKY  276 (624)
T 3lvg_A          273 YSKF  276 (624)
T ss_dssp             HHSS
T ss_pred             HHhc
Confidence            5543

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=91.44  E-value=1.1  Score=41.80  Aligned_cols=134  Identities=10%  Similarity=-0.013  Sum_probs=71.2

Q ss_pred             hHHHHHHHHHhcCcHHHHHHHHHHHHHCC-CCCCh-------hhHHHHHHHHHhhcchhhHHHHHHHHHHcC-CCCCh-h
Q 000951          808 TFNVLMRKCCEAGEMGKAFDLFNIMNMLG-VVPDT-------NTQDAIIMGLKRIAAFQESHFVLRGMAEKG-LTPKC-T  877 (1211)
Q Consensus       808 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~-------~~~~~l~~~~~~~g~~~eA~~~~~~~~~~g-~~p~~-~  877 (1211)
                      ++..-+..+...|.|+.|+-+.+.+.... ..|+.       .++..+++++...+++..|...|+++++.. .-|.. .
T Consensus        22 ~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s  101 (167)
T 3ffl_A           22 NVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSK  101 (167)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC-----
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCC
Confidence            44445567778888888888877654311 12331       255677888888888888888888887521 11211 1


Q ss_pred             HHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCcccCHHHHHHHHHHh
Q 000951          878 QYITLINGMCRVGNFQGAFKLKDEMEALGISSSDVAESAMVRGLAHCGKVEEAMLVLNRMLRMRLVPTIATFTTLIHKF  956 (1211)
Q Consensus       878 ~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~p~~~~~~~L~~~~  956 (1211)
                      ++..+...-...+             ......+.+.-+.++.+|.+.|++++|+.+++.+-...  -++.+-..|+..|
T Consensus       102 ~~~~~~~~ss~p~-------------s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k~--Rt~kvnm~LakLy  165 (167)
T 3ffl_A          102 VRPSTGNSASTPQ-------------SQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPSRQ--RTPKINMLLANLY  165 (167)
T ss_dssp             ----------------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGGG--CCHHHHHHHHHHC
T ss_pred             ccccccccCCCcc-------------cccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCchh--cCHHHHHHHHHHh
Confidence            1111110000000             01123344555667777777777888777765532110  1555555666554

>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=91.39  E-value=13  Score=41.87  Aligned_cols=50  Identities=14%  Similarity=0.080  Sum_probs=29.1

Q ss_pred             CChHHHHHHHHHHHHcC----CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 000951          644 GKVVSALLFFEKVVSKR----TFSPNNVMFTCLVDGLFKAGQSKAAMHISKIMD  693 (1211)
Q Consensus       644 g~~~~A~~~~~~~~~~~----~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~  693 (1211)
                      |++++|++.+..+.+..    ...........++..|...|+|+...+.+..+.
T Consensus        30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Ls   83 (445)
T 4b4t_P           30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLS   83 (445)
T ss_dssp             HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence            66777776665544321    122234556667777777777777666555543

>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=91.38  E-value=12  Score=42.33  Aligned_cols=94  Identities=11%  Similarity=0.058  Sum_probs=58.5

Q ss_pred             HHHHHHHHhcCcHHHHHHHHHHHHH--CCCCCC---hhhHHHHHHHHHhhcchhhHHHHHHHHHH----cCCCCCh--hH
Q 000951          810 NVLMRKCCEAGEMGKAFDLFNIMNM--LGVVPD---TNTQDAIIMGLKRIAAFQESHFVLRGMAE----KGLTPKC--TQ  878 (1211)
Q Consensus       810 ~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~---~~~~~~l~~~~~~~g~~~eA~~~~~~~~~----~g~~p~~--~~  878 (1211)
                      ..|...|...|++.+|.++++.+..  .+..+.   ...+...+..|...+++.+|...++++..    ....|+.  ..
T Consensus       141 ~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~  220 (445)
T 4b4t_P          141 KDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEY  220 (445)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHH
T ss_pred             HHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHH
Confidence            4566777777888888777777653  121111   34555666677777777777777777542    1112222  44


Q ss_pred             HHHHHHHHHhcCChhhHHHHHHHHH
Q 000951          879 YITLINGMCRVGNFQGAFKLKDEME  903 (1211)
Q Consensus       879 ~~~l~~~~~~~g~~~eA~~~~~~~~  903 (1211)
                      +...+..+.+.++|.+|...|..+.
T Consensus       221 ~~~~~~~~~~e~~y~~a~~~y~e~~  245 (445)
T 4b4t_P          221 YNLLVKISLHKREYLEVAQYLQEIY  245 (445)
T ss_dssp             HHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHH
Confidence            5566677777788888877777774

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=90.76  E-value=1.8  Score=38.67  Aligned_cols=22  Identities=14%  Similarity=0.018  Sum_probs=9.1

Q ss_pred             HHHHHHHHhhhhCCHHHHHHHH
Q 000951          948 TFTTLIHKFCKEAKFVDALKLK  969 (1211)
Q Consensus       948 ~~~~L~~~~~~~g~~~~A~~~~  969 (1211)
                      .+..|+-++.+.|+|++|....
T Consensus        80 ~LYyLAvg~yklgdY~~Ar~y~  101 (134)
T 3o48_A           80 CLYYLTIGCYKLGEYSMAKRYV  101 (134)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhHHHHHHHH
Confidence            3333444444444444444443

>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A

Probab=90.30  E-value=0.00029  Score=76.93  Aligned_cols=264  Identities=13%  Similarity=0.095  Sum_probs=184.2

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 000951          666 NVMFTCLVDGLFKAGQSKAAMHISKIMDKEGVYPDTIAFNAVMDGFSRMGNMMMANDLLSTMRSRKLCPSLATYNILLHG  745 (1211)
Q Consensus       666 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~  745 (1211)
                      ...|..|..+....++..+|++.|-   +   ..|+..|..++....+.|++++-...+...++..-  ++..=+.|+.+
T Consensus        54 p~VWs~LgkAqL~~~~v~eAIdsyI---k---A~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~k--e~~IDteLi~a  125 (624)
T 3lvg_A           54 PAVWSQLAKAQLQKGMVKEAIDSYI---K---ADDPSSYMEVVQAANTSGNWEELVKYLQMARKKAR--ESYVETELIFA  125 (624)
T ss_dssp             CCCSSSHHHHTTTSSSCTTTTTSSC---C---CSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCC--STTTTHHHHHH
T ss_pred             ccHHHHHHHHHHccCchHHHHHHHH---h---CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhc--ccccHHHHHHH
Confidence            3467888888888888877765442   2   23556677888888888999888888887776533  33334577888


Q ss_pred             HHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCcHHHH
Q 000951          746 YSKKKDLLMCSMLLNTMKMEGLLPDKLTCHSLILGFCETGMLEVGFKFLKKMIAEGTMVDCFTFNVLMRKCCEAGEMGKA  825 (1211)
Q Consensus       746 ~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A  825 (1211)
                      |.+.++..+-.++.       ..|+..-....+.-|...|.++.|.-+|..+-         -|..|..++.+.|++..|
T Consensus       126 yAk~~rL~elEefl-------~~~N~A~iq~VGDrcf~e~lYeAAKilys~is---------N~akLAstLV~L~~yq~A  189 (624)
T 3lvg_A          126 LAKTNRLAELEEFI-------NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVS---------NFGRLASTLVHLGEYQAA  189 (624)
T ss_dssp             HHTSCSSSTTTSTT-------SCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSC---------CCTTTSSSSSSCSGGGSS
T ss_pred             HHhhCcHHHHHHHH-------cCCCcccHHHHHHHHHHccCHHHHHHHHHhCc---------cHHHHHHHHHHHHHHHHH
Confidence            88888765433322       23666666778888888888888877775432         344566677888888888


Q ss_pred             HHHHHHHHHCCCCCChhhHHHHHHHHHhhcchhhHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChhhHHHHHHHHHHc
Q 000951          826 FDLFNIMNMLGVVPDTNTQDAIIMGLKRIAAFQESHFVLRGMAEKGLTPKCTQYITLINGMCRVGNFQGAFKLKDEMEAL  905 (1211)
Q Consensus       826 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~  905 (1211)
                      .+.-+++      .++-||-.+-.+|...+.+.-|-..--.++   +.||.  ...++.-|...|.++|-+.+++..+..
T Consensus       190 VdaArKA------ns~ktWKeV~~ACvd~~EfrLAqicGLniI---vhade--L~elv~~YE~~G~f~ELIsLlEaglgl  258 (624)
T 3lvg_A          190 VDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV---VHADE--LEELINYYQDRGYFEELITMLEAALGL  258 (624)
T ss_dssp             TTTTTTC------CSSCSHHHHTHHHHHSCTTTTTTHHHHHHH---CCSSC--CSGGGSSSSTTCCCTTSTTTHHHHTTS
T ss_pred             HHHHHhc------CChhHHHHHHHHHhCchHHHHHHHhcchhc---ccHHH--HHHHHHHHHhCCCHHHHHHHHHHHhCC
Confidence            8765443      467899999999999999988877766655   44543  234566788999999999999999743


Q ss_pred             CCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHH-hCCcccCHHHHHHHHHHhhhhCCHHHHHHHHHHHH
Q 000951          906 GISSSDVAESAMVRGLAHCGKVEEAMLVLNRML-RMRLVPTIATFTTLIHKFCKEAKFVDALKLKGTME  973 (1211)
Q Consensus       906 ~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~-~~~~~p~~~~~~~L~~~~~~~g~~~~A~~~~~~~~  973 (1211)
                       -......+.-|+-.|++-. .++-.+.++... +.+++       .++.+|-+..-|.|+.-+|....
T Consensus       259 -ErAHmGmFTELaILYsKY~-PeKlmEHlklf~sriNip-------KviracE~ahLW~ElvfLY~~yd  318 (624)
T 3lvg_A          259 -ERAHMGMFTELAILYSKFK-PQKMREHLELFWSRVNIP-------KVLRAAEQAHLWAELVFLYDKYE  318 (624)
T ss_dssp             -TTCCHHHHHHHHHHHHSSC-TTHHHHHHTTSSSSSCCT-------TTHHHHTTTTCHHHHHHHHHHHT
T ss_pred             -CchhHHHHHHHHHHHHhcC-HHHHHHHHHHHHHhccHH-------HHHHHHHHHhhHHHHHHHHhcch
Confidence             2456778899998887753 444444433221 12221       35778888888999888876543

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=90.07  E-value=4.9  Score=36.40  Aligned_cols=70  Identities=9%  Similarity=0.034  Sum_probs=37.0

Q ss_pred             CChhHHHHHHHHHHhcCCh---hhHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCcc
Q 000951          874 PKCTQYITLINGMCRVGNF---QGAFKLKDEMEALGISSSDVAESAMVRGLAHCGKVEEAMLVLNRMLRMRLV  943 (1211)
Q Consensus       874 p~~~~~~~l~~~~~~~g~~---~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~  943 (1211)
                      |...+-...+.++.+..+.   .+++.+++.+...+......-.+.++.++.+.|++++|++..+.+++..|.
T Consensus        37 vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~  109 (144)
T 1y8m_A           37 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERN  109 (144)
T ss_dssp             SCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCC
T ss_pred             CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCC
Confidence            4445555555555555433   345555555554322223334455555666666666666666666665543

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=90.01  E-value=3.4  Score=37.45  Aligned_cols=69  Identities=13%  Similarity=-0.012  Sum_probs=37.2

Q ss_pred             cCHHHHHHHHHHhhhhCC---HHHHHHHHHHHHhcCCCCc-h-HHHHHHHHHHHhCCChhHHHHHHHHHHHcCCccCh
Q 000951          944 PTIATFTTLIHKFCKEAK---FVDALKLKGTMELSGVKLD-V-VSYNVLISGLCANGDVMPAFELYEEMKHKGLCPNS 1016 (1211)
Q Consensus       944 p~~~~~~~L~~~~~~~g~---~~~A~~~~~~~~~~~~~p~-~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~p~~ 1016 (1211)
                      |+..+-..+++++.+..+   ..+++.+++.+...  .|+ . ...+.|+-++.+.|++++|.+..+.+++  +.|+.
T Consensus        37 vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~--~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~--~eP~n  110 (144)
T 1y8m_A           37 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE--AESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE--HERNN  110 (144)
T ss_dssp             SCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHH--CCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH--TCCCC
T ss_pred             CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc--CccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHh--cCCCc
Confidence            455566666666655543   33455555544433  342 2 2445555566666666666666666655  45544

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=89.49  E-value=2.9  Score=37.37  Aligned_cols=72  Identities=10%  Similarity=0.034  Sum_probs=53.2

Q ss_pred             CCCChhHHHHHHHHHHhcCCh---hhHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCcc
Q 000951          872 LTPKCTQYITLINGMCRVGNF---QGAFKLKDEMEALGISSSDVAESAMVRGLAHCGKVEEAMLVLNRMLRMRLV  943 (1211)
Q Consensus       872 ~~p~~~~~~~l~~~~~~~g~~---~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~  943 (1211)
                      -.|...+-...+.++.+..+.   .+++.+++.+.+.+.......++.++.++.+.|++++|++..+.+++..|.
T Consensus        36 ~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~  110 (134)
T 3o48_A           36 PTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERN  110 (134)
T ss_dssp             GGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTT
T ss_pred             CCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCC
Confidence            445667777778888777654   468888888876542234556777888889999999999999999887755

>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1

Probab=89.31  E-value=11  Score=33.48  Aligned_cols=59  Identities=20%  Similarity=0.289  Sum_probs=27.2

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 000951          391 VIDGLCKCGLLDEAMQLFNKMFKDGLNPDLITFSVLINGFCKVGMTRKAKAVLCKMYRDG  450 (1211)
Q Consensus       391 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g  450 (1211)
                      -++.+...|+-++-.+++.++... .+|++.....+..+|.+.|+..+|.+++.++-+.|
T Consensus        97 ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG  155 (172)
T 1wy6_A           97 ALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKKG  155 (172)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhh
Confidence            344444445555544554443221 23444444444455555555555555555554444

>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A

Probab=88.21  E-value=28  Score=36.64  Aligned_cols=107  Identities=9%  Similarity=0.038  Sum_probs=52.2

Q ss_pred             HHHHcCCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHH----HHHHHHCCCCCCHHHHHHHHHHHHcC
Q 000951          498 ASLCKGGKVCEAEDYVGHMKRIGVVPNSITFDCMIDGYGTLGDGLKAFSM----FDEMVKLGHHPSIFTYGSLLKGLCKG  573 (1211)
Q Consensus       498 ~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~----~~~m~~~~~~p~~~~~~~ll~~~~~~  573 (1211)
                      .-|.+.+++++|++++..-.               ..+.+.|+...|.++    .+-..+.+.+++......++..+...
T Consensus        41 ~Ry~~~~~~~eAidlL~~ga---------------~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~~~  105 (312)
T 2wpv_A           41 NRYVRSKSYEHAIELISQGA---------------LSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIAEL  105 (312)
T ss_dssp             HHHHHTTCHHHHHHHHHHHH---------------HHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHTTC
T ss_pred             HHHHHhcCHHHHHHHHHHHH---------------HHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHC
Confidence            34556666666666543322               123344555444443    23333445666666666555555442


Q ss_pred             CCHH-HHHHHHHHhh----hCC--CCccHHHHHHHHHHHHHcCCHHHHHHHHH
Q 000951          574 GNLK-EAKRFLNSLH----HIP--SAVDTVAYNTILAETCKSGNLWEAIVLLD  619 (1211)
Q Consensus       574 g~~~-~A~~~~~~~~----~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~  619 (1211)
                      ...+ .=..+++.++    +.+  +.-++.....+...|.+.|++.+|...|-
T Consensus       106 p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i  158 (312)
T 2wpv_A          106 DPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFM  158 (312)
T ss_dssp             CTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             CCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence            2111 0111222221    221  22366677777777777777777766553

>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A

Probab=87.70  E-value=36  Score=37.29  Aligned_cols=26  Identities=8%  Similarity=-0.107  Sum_probs=15.0

Q ss_pred             HHHHHHHHHHHccCChHHHHHHHHHH
Q 000951          737 ATYNILLHGYSKKKDLLMCSMLLNTM  762 (1211)
Q Consensus       737 ~~~~~l~~~~~~~g~~~~A~~~~~~~  762 (1211)
                      .+...|+..|.+.|+.++..+++...
T Consensus        20 ~~~~~l~~~~~~~~~~~~~~~~~~~~   45 (394)
T 3txn_A           20 QGILQQGELYKQEGKAKELADLIKVT   45 (394)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            44555666666666666655555544

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=87.34  E-value=3  Score=50.10  Aligned_cols=54  Identities=22%  Similarity=0.198  Sum_probs=42.7

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhCCcccCHHHHHHHHHHhhhhCCHHHHHHHHHHH
Q 000951          918 VRGLAHCGKVEEAMLVLNRMLRMRLVPTIATFTTLIHKFCKEAKFVDALKLKGTM  972 (1211)
Q Consensus       918 ~~~~~~~g~~~eA~~~~~~~~~~~~~p~~~~~~~L~~~~~~~g~~~~A~~~~~~~  972 (1211)
                      ++-+...|+++-|+++.++++..-|. +..+|..|+.+|...|+|+.|+-.+..+
T Consensus       344 a~FLl~K~~~elAL~~Ak~AV~~aPs-eF~tW~~La~vYi~l~d~e~ALLtLNSc  397 (754)
T 4gns_B          344 TNFLLNRGDYELALGVSNTSTELALD-SFESWYNLARCHIKKEEYEKALFAINSM  397 (754)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred             HHHHhccCcHHHHHHHHHHHHhcCch-hhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence            44556678888888888888887655 7888888888888888888888776654

>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1

Probab=86.26  E-value=18  Score=32.28  Aligned_cols=64  Identities=13%  Similarity=0.013  Sum_probs=37.1

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCC
Q 000951          704 FNAVMDGFSRMGNMMMANDLLSTMRSRKLCPSLATYNILLHGYSKKKDLLMCSMLLNTMKMEGLL  768 (1211)
Q Consensus       704 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~  768 (1211)
                      ....++.+..+|+-++-.++...+.. +.+|++.....+..+|.+-|+..+|.+++.++-+.|++
T Consensus        94 vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k  157 (172)
T 1wy6_A           94 VNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK  157 (172)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence            34445555566666666666666432 23445666666666666666666666666666666654

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=85.77  E-value=2  Score=51.69  Aligned_cols=52  Identities=12%  Similarity=0.140  Sum_probs=32.5

Q ss_pred             HHHhcCcHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhcchhhHHHHHHHH
Q 000951          815 KCCEAGEMGKAFDLFNIMNMLGVVPDTNTQDAIIMGLKRIAAFQESHFVLRGM  867 (1211)
Q Consensus       815 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~  867 (1211)
                      -+...|+++-|+++-+++.... +.+..+|..|+.+|...|+++.|+-.++.+
T Consensus       346 FLl~K~~~elAL~~Ak~AV~~a-PseF~tW~~La~vYi~l~d~e~ALLtLNSc  397 (754)
T 4gns_B          346 FLLNRGDYELALGVSNTSTELA-LDSFESWYNLARCHIKKEEYEKALFAINSM  397 (754)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred             HHhccCcHHHHHHHHHHHHhcC-chhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence            3445667777777776666532 233666777777777777777777666664

>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}

Probab=85.71  E-value=40  Score=35.78  Aligned_cols=80  Identities=6%  Similarity=0.029  Sum_probs=47.5

Q ss_pred             CHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHH
Q 000951          735 SLATYNILLHGYSKKKDLLMCSMLLNTMKMEGLLPDKLTCHSLILGFCETGMLEVGFKFLKKMIAEGTMVDCFTFNVLMR  814 (1211)
Q Consensus       735 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~  814 (1211)
                      |+..+..++..|.+.+++.+|...|-  .  |-.+....+..++.-+...+...+              .|.++..+++ 
T Consensus       135 dp~LH~~ig~~~~~e~~~~~Ae~H~i--l--g~~~s~~~~a~mL~ew~~~~~~~e--------------~dlfiaRaVL-  195 (336)
T 3lpz_A          135 DPELHHVVGTLYVEEGEFEAAEKHLV--L--GTKESPEVLARMEYEWYKQDESHT--------------APLYCARAVL-  195 (336)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHT--T--SCTTHHHHHHHHHHHHHHTSCGGG--------------HHHHHHHHHH-
T ss_pred             CHHHHHHHHHHHHccCCHHHHHHHHH--h--cCCchHHHHHHHHHHHHHhcCCcc--------------HHHHHHHHHH-
Confidence            78888888899999999988887772  1  333333455444443333332111              1222223333 


Q ss_pred             HHHhcCcHHHHHHHHHHHH
Q 000951          815 KCCEAGEMGKAFDLFNIMN  833 (1211)
Q Consensus       815 ~~~~~g~~~~A~~~~~~~~  833 (1211)
                      .|.-.++...|..+|+...
T Consensus       196 ~yL~l~n~~~A~~~~~~f~  214 (336)
T 3lpz_A          196 PYLLVANVRAANTAYRIFT  214 (336)
T ss_dssp             HHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHhCCHHHHHHHHHHHH
Confidence            3566778888888776654

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=84.24  E-value=3.9  Score=45.38  Aligned_cols=65  Identities=15%  Similarity=0.171  Sum_probs=36.0

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhCCcccCHHHHHHHHHHhhhhCCHHHHHHHHHHHH-----hcCCCCchH
Q 000951          917 MVRGLAHCGKVEEAMLVLNRMLRMRLVPTIATFTTLIHKFCKEAKFVDALKLKGTME-----LSGVKLDVV  982 (1211)
Q Consensus       917 l~~~~~~~g~~~eA~~~~~~~~~~~~~p~~~~~~~L~~~~~~~g~~~~A~~~~~~~~-----~~~~~p~~~  982 (1211)
                      ++..+...|++++|+..++.++...|- +...|..|+.+|...|+..+|+..|+...     ++|++|...
T Consensus       177 ~~~~~l~~g~~~~a~~~l~~~~~~~P~-~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~  246 (388)
T 2ff4_A          177 KAEAEIACGRASAVIAELEALTFEHPY-REPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPT  246 (388)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHH
Confidence            444555566666666666665555433 55566666666666666666666555432     345555443

>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A

Probab=82.77  E-value=60  Score=35.52  Aligned_cols=62  Identities=11%  Similarity=-0.066  Sum_probs=29.1

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCCCCHHHHHH--HH--HHHH-hCCChHHHHHHHHHHHH
Q 000951          597 AYNTILAETCKSGNLWEAIVLLDEMVQF--NLLPDRYTYTI--LL--AGLC-RKGKVVSALLFFEKVVS  658 (1211)
Q Consensus       597 ~~~~li~~~~~~g~~~~A~~~~~~m~~~--~~~p~~~~~~~--li--~~~~-~~g~~~~A~~~~~~~~~  658 (1211)
                      ++..-+..|...+++.++...+......  .+.+++..-..  ..  -.+. ..+++.+|...|-+..+
T Consensus       141 v~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~  209 (394)
T 3txn_A          141 VQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGALDLQSGILHAADERDFKTAFSYFYEAFE  209 (394)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHHHHhhHHHHHhccCHHHHHHHHHHHHh
Confidence            4444455555666666666665554431  11122222111  11  1234 56666666666655543

>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A

Probab=82.35  E-value=53  Score=34.57  Aligned_cols=80  Identities=8%  Similarity=-0.063  Sum_probs=46.5

Q ss_pred             CHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc---CChHHHHHHHHHHHHcCCCCCHhhHHH
Q 000951          735 SLATYNILLHGYSKKKDLLMCSMLLNTMKMEGLLPDKLTCHSLILGFCET---GMLEVGFKFLKKMIAEGTMVDCFTFNV  811 (1211)
Q Consensus       735 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~~~~~~~~~~~~  811 (1211)
                      ++..+..++..|.+.|++.+|...|-.    |-.-|...+..++.-+...   |...++--+              +..+
T Consensus       133 dp~LH~~~a~~~~~e~~~~~A~~H~i~----~~~~s~~~~a~~l~~w~~~~~~~~~~e~dlf--------------~~Ra  194 (312)
T 2wpv_A          133 DPYLHNTIGSKLLEGDFVYEAERYFML----GTHDSMIKYVDLLWDWLCQVDDIEDSTVAEF--------------FSRL  194 (312)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHT----SCHHHHHHHHHHHHHHHHHTTCCCHHHHHHH--------------HHHH
T ss_pred             CHHHHHHHHHHHhhcCCHHHHHHHHHh----CCCccHHHHHHHHHHHHHhcCCCCcchHHHH--------------HHHH
Confidence            788888888999999998888877641    1111334444444333333   433332221              2222


Q ss_pred             HHHHHHhcCcHHHHHHHHHHHH
Q 000951          812 LMRKCCEAGEMGKAFDLFNIMN  833 (1211)
Q Consensus       812 l~~~~~~~g~~~~A~~~~~~~~  833 (1211)
                      ++ .|.-.|+...|..+|+...
T Consensus       195 VL-~yL~l~n~~~A~~~~~~f~  215 (312)
T 2wpv_A          195 VF-NYLFISNISFAHESKDIFL  215 (312)
T ss_dssp             HH-HHHHTTBHHHHHHHHHHHH
T ss_pred             HH-HHHHhcCHHHHHHHHHHHH
Confidence            22 3556788888888887664

>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}

Probab=82.26  E-value=27  Score=45.06  Aligned_cols=56  Identities=7%  Similarity=-0.024  Sum_probs=40.9

Q ss_pred             hHHHHHHHHHhcCcHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhcchhhHHHHHHHHH
Q 000951          808 TFNVLMRKCCEAGEMGKAFDLFNIMNMLGVVPDTNTQDAIIMGLKRIAAFQESHFVLRGMA  868 (1211)
Q Consensus       808 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~  868 (1211)
                      ....++..+...+.++-+.++..-.     +.++..-..++.+|...|++++|...|.++.
T Consensus       814 ~~~~l~~~l~~~~~~~~~~~l~~~~-----~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa  869 (1139)
T 4fhn_B          814 LVTELVEKLFLFKQYNACMQLIGWL-----NSDPIAVYLKALIYLKSKEAVKAVRCFKTTS  869 (1139)
T ss_dssp             HHHHHHHHHHHHSCTTHHHHHHHHS-----CCCHHHHHHHHHHHHHTTCHHHHHHHHHTCC
T ss_pred             hHHHHHHHHHHhhhHHHHHHHhhhc-----cCCcHHHHHHHHHHHhcCCHHHHHHHHHHHh
Confidence            3445666777888888877654332     3455666778888999999999999998864

>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}

Probab=80.40  E-value=17  Score=46.99  Aligned_cols=165  Identities=13%  Similarity=0.116  Sum_probs=101.8

Q ss_pred             HHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhc
Q 000951          776 SLILGFCETGMLEVGFKFLKKMIAEGTMVDCFTFNVLMRKCCEAGEMGKAFDLFNIMNMLGVVPDTNTQDAIIMGLKRIA  855 (1211)
Q Consensus       776 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  855 (1211)
                      .++..+...+.++-+.++..-     .+.++.....++.+|..+|++++|.+.|+++.. ++..+....           
T Consensus       817 ~l~~~l~~~~~~~~~~~l~~~-----~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~-~~~~~~~l~-----------  879 (1139)
T 4fhn_B          817 ELVEKLFLFKQYNACMQLIGW-----LNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSL-VLYSHTSQF-----------  879 (1139)
T ss_dssp             HHHHHHHHHSCTTHHHHHHHH-----SCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCC-SCTTCCCSC-----------
T ss_pred             HHHHHHHHhhhHHHHHHHhhh-----ccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhh-hhcccchhh-----------
Confidence            466677888888887765543     344555556678899999999999999988742 222221100           


Q ss_pred             chhhHHHHHHHHHHcCC--CCChhHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCch----HHHHHHHHHHHhcCCHHH
Q 000951          856 AFQESHFVLRGMAEKGL--TPKCTQYITLINGMCRVGNFQGAFKLKDEMEALGISSSD----VAESAMVRGLAHCGKVEE  929 (1211)
Q Consensus       856 ~~~eA~~~~~~~~~~g~--~p~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~e  929 (1211)
                         ....-+..+.....  ..-..-|..++..+.+.|.++.+++.-..+++...+.+.    ..|..+...+...|++++
T Consensus       880 ---~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~  956 (1139)
T 4fhn_B          880 ---AVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDA  956 (1139)
T ss_dssp             ---SSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGG
T ss_pred             ---hhhcccccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHH
Confidence               00001112222111  111245667777888888888888888888754322222    256777788888899999


Q ss_pred             HHHHHHHHHhCCcccCHHHHHHHHHHhhhhCCH
Q 000951          930 AMLVLNRMLRMRLVPTIATFTTLIHKFCKEAKF  962 (1211)
Q Consensus       930 A~~~~~~~~~~~~~p~~~~~~~L~~~~~~~g~~  962 (1211)
                      |...+-.+-....  -......|...++..|..
T Consensus       957 Ay~aL~~~pd~~~--r~~cLr~LV~~lce~~~~  987 (1139)
T 4fhn_B          957 AHVALMVLSTTPL--KKSCLLDFVNQLTKQGKI  987 (1139)
T ss_dssp             GGHHHHHHHHSSS--CHHHHHHHHHHHHHHCCH
T ss_pred             HHHHHHhCCCHHH--HHHHHHHHHHHHHhCCCh
Confidence            9888765543321  345666677766666553

>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1

Probab=80.07  E-value=27  Score=35.57  Aligned_cols=57  Identities=19%  Similarity=0.109  Sum_probs=37.0

Q ss_pred             HHhcCChhhHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCcc
Q 000951          886 MCRVGNFQGAFKLKDEMEALGISSSDVAESAMVRGLAHCGKVEEAMLVLNRMLRMRLV  943 (1211)
Q Consensus       886 ~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~  943 (1211)
                      ..+.|++++|++.....++. .|.|...-..++..++-.|++++|.+-++...+++|.
T Consensus         7 ll~~g~L~~al~~~~~~VR~-~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~   63 (273)
T 1zbp_A            7 ALSEGQLQQALELLIEAIKA-SPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPE   63 (273)
T ss_dssp             HTTTTCHHHHHHHHHHHHHT-CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGG
T ss_pred             HHhCCCHHHHHHHHHHHHHh-CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCch
Confidence            34566666666666666654 2555666666677777777777777777777766544

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	1211
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.93
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.92
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.67
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.65
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.44
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.37
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	99.29
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	99.28
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.24
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	99.22
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	99.21
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.17
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	99.01
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	98.88
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	98.84
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	98.79
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	98.79
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	98.76
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	98.74
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	98.74
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	98.69
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	98.67
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	98.65
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	98.63
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	98.61
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	98.58
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	98.54
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	98.53
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	98.46
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	98.46
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	98.41
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	98.4
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	98.39
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	98.38
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	98.38
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	98.3
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	98.26
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	98.24
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	98.23
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	98.22
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	98.19
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	98.19
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	98.16
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	98.14
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	97.84
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	97.64
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	97.63
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	97.63
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	97.62
d1b89a_	336	Clathrin heavy chain proximal leg segment {Cow (Bo	97.61
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	97.6
d1b89a_	336	Clathrin heavy chain proximal leg segment {Cow (Bo	97.52
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	97.49
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	97.42
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	96.76
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	96.64
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	94.66
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	94.5
d1qsaa1	450	70 KDa soluble lytic transglycosylase (SLT70), sup	93.94
d1wy6a1	161	Hypothetical protein ST1625 {Archaeon Sulfolobus t	91.91
d1qsaa1	450	70 KDa soluble lytic transglycosylase (SLT70), sup	91.77
d1wy6a1	161	Hypothetical protein ST1625 {Archaeon Sulfolobus t	86.84

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=2.8e-22  Score=229.15  Aligned_cols=381  Identities=12%  Similarity=0.007  Sum_probs=297.6

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcC
Q 000951          601 ILAETCKSGNLWEAIVLLDEMVQFNLLPDRYTYTILLAGLCRKGKVVSALLFFEKVVSKRTFSPNNVMFTCLVDGLFKAG  680 (1211)
Q Consensus       601 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g  680 (1211)
                      +...+.+.|++++|++.|+++++.. +-+...+..+...|.+.|++++|+..|+++++..  +.+..++..++.+|...|
T Consensus         5 la~~~~~~G~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--p~~~~a~~~l~~~~~~~g   81 (388)
T d1w3ba_           5 LAHREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN--PLLAEAYSNLGNVYKERG   81 (388)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHhhhhc
Confidence            4556777888888888888888764 2356778888888888889999999988888854  334677888888888889


Q ss_pred             CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHH
Q 000951          681 QSKAAMHISKIMDKEGVYPDTIAFNAVMDGFSRMGNMMMANDLLSTMRSRKLCPSLATYNILLHGYSKKKDLLMCSMLLN  760 (1211)
Q Consensus       681 ~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~  760 (1211)
                      ++++|+..+..+.+.. ..+..............+....+.......... ..................+....+...+.
T Consensus        82 ~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (388)
T d1w3ba_          82 QLQEAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQY-NPDLYCVRSDLGNLLKALGRLEEAKACYL  159 (388)
T ss_dssp             CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHH-CTTCTHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred             cccccccccccccccc-ccccccccccccccccccccccccccccccccc-ccccccccccccccccccchhhhhHHHHH
Confidence            9999988888887653 334444555555555566666666655555443 22345555666667777888888888888


Q ss_pred             HHHHCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHHHHHCCCCC
Q 000951          761 TMKMEGLLP-DKLTCHSLILGFCETGMLEVGFKFLKKMIAEGTMVDCFTFNVLMRKCCEAGEMGKAFDLFNIMNMLGVVP  839 (1211)
Q Consensus       761 ~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~  839 (1211)
                      +....  .| +...+..++..+...|++++|...++++++.. +.+..++..++.++...|++++|++.|++..... +.
T Consensus       160 ~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~  235 (388)
T d1w3ba_         160 KAIET--QPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PN  235 (388)
T ss_dssp             HHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TT
T ss_pred             Hhhcc--CcchhHHHHhhcccccccCcHHHHHHHHHHHHHhC-cccHHHHHHHhhhhhccccHHHHHHHHHHhHHHh-hh
Confidence            87773  45 45566777788888999999999999988752 2346678888889999999999999998887643 34


Q ss_pred             ChhhHHHHHHHHHhhcchhhHHHHHHHHHHcCCCCC-hhHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCchHHHHHHH
Q 000951          840 DTNTQDAIIMGLKRIAAFQESHFVLRGMAEKGLTPK-CTQYITLINGMCRVGNFQGAFKLKDEMEALGISSSDVAESAMV  918 (1211)
Q Consensus       840 ~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~  918 (1211)
                      +...+..++..|.+.|++++|+..|+++++  +.|+ ..++..++.++...|++++|.+.++.+... .+.+...+..++
T Consensus       236 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~  312 (388)
T d1w3ba_         236 HAVVHGNLACVYYEQGLIDLAIDTYRRAIE--LQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRL-CPTHADSLNNLA  312 (388)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH-CTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhcc-CCccchhhhHHH
Confidence            577788888999999999999999999988  7786 478888999999999999999999998876 467778888889


Q ss_pred             HHHHhcCCHHHHHHHHHHHHhCCcccCHHHHHHHHHHhhhhCCHHHHHHHHHHHHhcCCCCchH-HHHHHHHHHHhCCC
Q 000951          919 RGLAHCGKVEEAMLVLNRMLRMRLVPTIATFTTLIHKFCKEAKFVDALKLKGTMELSGVKLDVV-SYNVLISGLCANGD  996 (1211)
Q Consensus       919 ~~~~~~g~~~eA~~~~~~~~~~~~~p~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~  996 (1211)
                      .++...|++++|++.|+++++..|. ++.+|..+|.+|...|++++|+..|+...+.  .|+.. +|..++.+|...||
T Consensus       313 ~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~l--~P~~~~a~~~lg~~~~~~~D  388 (388)
T d1w3ba_         313 NIKREQGNIEEAVRLYRKALEVFPE-FAAAHSNLASVLQQQGKLQEALMHYKEAIRI--SPTFADAYSNMGNTLKEMQD  388 (388)
T ss_dssp             HHHHTTTCHHHHHHHHHHHTTSCTT-CHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHTCC
T ss_pred             HHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCC
Confidence            9999999999999999999988766 7888999999999999999999998866544  88654 88889988887775

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=5.3e-22  Score=226.88  Aligned_cols=378  Identities=13%  Similarity=0.078  Sum_probs=282.0

Q ss_pred             HHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHH
Q 000951          569 GLCKGGNLKEAKRFLNSLHHIPSAVDTVAYNTILAETCKSGNLWEAIVLLDEMVQFNLLPDRYTYTILLAGLCRKGKVVS  648 (1211)
Q Consensus       569 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~  648 (1211)
                      .+.+.|++++|.+.++++.+..|. ++.++..++.+|.+.|++++|+..|+++++.+ +.+..+|..+...|...|++++
T Consensus         8 ~~~~~G~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~l~~~~~~~g~~~~   85 (388)
T d1w3ba_           8 REYQAGDFEAAERHCMQLWRQEPD-NTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQLQE   85 (388)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHhhhhccccc
Confidence            344556666666666665554433 45566666666777777777777777766653 2245566667777777777777


Q ss_pred             HHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 000951          649 ALLFFEKVVSKRTFSPNNVMFTCLVDGLFKAGQSKAAMHISKIMDKEGVYPDTIAFNAVMDGFSRMGNMMMANDLLSTMR  728 (1211)
Q Consensus       649 A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~  728 (1211)
                      |+..+..+.+..  +.+..............+....+........... .................+....+...+.+..
T Consensus        86 A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (388)
T d1w3ba_          86 AIEHYRHALRLK--PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKAI  162 (388)
T ss_dssp             HHHHHHHHHHHC--TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred             cccccccccccc--cccccccccccccccccccccccccccccccccc-cccccccccccccccccchhhhhHHHHHHhh
Confidence            777777777654  3334444444444445555555555544443332 2333344445555666777777777777776


Q ss_pred             HCCCCC-CHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH
Q 000951          729 SRKLCP-SLATYNILLHGYSKKKDLLMCSMLLNTMKMEGLLP-DKLTCHSLILGFCETGMLEVGFKFLKKMIAEGTMVDC  806 (1211)
Q Consensus       729 ~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~  806 (1211)
                      ..  .| +...+..++..+...|++++|...+.++++  ..| +..++..++..+...|++++|+..+++....+ +.+.
T Consensus       163 ~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~  237 (388)
T d1w3ba_         163 ET--QPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVT--LDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHA  237 (388)
T ss_dssp             HH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCH
T ss_pred             cc--CcchhHHHHhhcccccccCcHHHHHHHHHHHHH--hCcccHHHHHHHhhhhhccccHHHHHHHHHHhHHHh-hhHH
Confidence            53  34 677888888889999999999999999887  456 45577788889999999999999999988753 3356


Q ss_pred             hhHHHHHHHHHhcCcHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhcchhhHHHHHHHHHHcCCCCC-hhHHHHHHHH
Q 000951          807 FTFNVLMRKCCEAGEMGKAFDLFNIMNMLGVVPDTNTQDAIIMGLKRIAAFQESHFVLRGMAEKGLTPK-CTQYITLING  885 (1211)
Q Consensus       807 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~g~~p~-~~~~~~l~~~  885 (1211)
                      ..+..++.+|.+.|++++|++.|+++++.. +.+..+|..++..|...|++++|+..|+.+..  ..|+ ...+..++.+
T Consensus       238 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~l~~~  314 (388)
T d1w3ba_         238 VVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALR--LCPTHADSLNNLANI  314 (388)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH--HCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhc--cCCccchhhhHHHHH
Confidence            677888899999999999999999998754 33578899999999999999999999999888  5664 4788899999


Q ss_pred             HHhcCChhhHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCcccCHHHHHHHHHHhhhhCC
Q 000951          886 MCRVGNFQGAFKLKDEMEALGISSSDVAESAMVRGLAHCGKVEEAMLVLNRMLRMRLVPTIATFTTLIHKFCKEAK  961 (1211)
Q Consensus       886 ~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~p~~~~~~~L~~~~~~~g~  961 (1211)
                      +...|++++|++.|+++++. .|.+..++..++.+|...|++++|++.|+++++.+|. ++.+|..||.+|.+.||
T Consensus       315 ~~~~~~~~~A~~~~~~al~~-~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~-~~~a~~~lg~~~~~~~D  388 (388)
T d1w3ba_         315 KREQGNIEEAVRLYRKALEV-FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT-FADAYSNMGNTLKEMQD  388 (388)
T ss_dssp             HHTTTCHHHHHHHHHHHTTS-CTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHTCC
T ss_pred             HHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCC
Confidence            99999999999999999876 3567788999999999999999999999999998876 88999999999998886

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=7.9e-15  Score=161.85  Aligned_cols=264  Identities=13%  Similarity=0.043  Sum_probs=165.9

Q ss_pred             HHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhc
Q 000951          707 VMDGFSRMGNMMMANDLLSTMRSRKLCP-SLATYNILLHGYSKKKDLLMCSMLLNTMKMEGLLP-DKLTCHSLILGFCET  784 (1211)
Q Consensus       707 li~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~  784 (1211)
                      ....+.+.|++++|...|+++.+.  .| +..+|..++.+|...|++++|+..|.++++  +.| +...+..++.+|...
T Consensus        25 ~g~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~  100 (323)
T d1fcha_          25 EGLRRLQEGDLPNAVLLFEAAVQQ--DPKHMEAWQYLGTTQAENEQELLAISALRRCLE--LKPDNQTALMALAVSFTNE  100 (323)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHS--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhc--ccccccccccccccccccc
Confidence            344455666666666666666643  34 455666666666666666666666666665  334 344555555666666


Q ss_pred             CChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhcchhhHHHHH
Q 000951          785 GMLEVGFKFLKKMIAEGTMVDCFTFNVLMRKCCEAGEMGKAFDLFNIMNMLGVVPDTNTQDAIIMGLKRIAAFQESHFVL  864 (1211)
Q Consensus       785 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~  864 (1211)
                      |++++|.+.+++++..  .|+..............                   .+..........+...+.+.+|...|
T Consensus       101 ~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~a~~~~  159 (323)
T d1fcha_         101 SLQRQACEILRDWLRY--TPAYAHLVTPAEEGAGG-------------------AGLGPSKRILGSLLSDSLFLEVKELF  159 (323)
T ss_dssp             TCHHHHHHHHHHHHHT--STTTGGGCC----------------------------------CTTHHHHHHHHHHHHHHHH
T ss_pred             ccccccccchhhHHHh--ccchHHHHHhhhhhhhh-------------------cccccchhhHHHHHHhhHHHHHHHHH
Confidence            6666666666666552  22211100000000000                   00000111122334556778888888


Q ss_pred             HHHHHcCCCCC---hhHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 000951          865 RGMAEKGLTPK---CTQYITLINGMCRVGNFQGAFKLKDEMEALGISSSDVAESAMVRGLAHCGKVEEAMLVLNRMLRMR  941 (1211)
Q Consensus       865 ~~~~~~g~~p~---~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~  941 (1211)
                      .++++  ..|+   ...+..++..+...|++++|+..|++++... +.+..+|..++.++...|++++|++.|+++++.+
T Consensus       160 ~~al~--~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~  236 (323)
T d1fcha_         160 LAAVR--LDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQ  236 (323)
T ss_dssp             HHHHH--HSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHH--HhhcccccccchhhHHHHHHHHHHhhhhcccccccccc-cccccchhhhhhcccccccchhHHHHHHHHHHHh
Confidence            88887  4453   4667788888888999999999999888763 5567788888889999999999999999998877


Q ss_pred             cccCHHHHHHHHHHhhhhCCHHHHHHHHHHHHhcCCCCchH------------HHHHHHHHHHhCCChhHHH
Q 000951          942 LVPTIATFTTLIHKFCKEAKFVDALKLKGTMELSGVKLDVV------------SYNVLISGLCANGDVMPAF 1001 (1211)
Q Consensus       942 ~~p~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~------------~~~~l~~~~~~~g~~~~a~ 1001 (1211)
                      |. ++.+|..||.+|.+.|++++|+..|+.....  .|+..            .|..+..++...|+++.+.
T Consensus       237 p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~~~~~~~~~~~~l~~al~~~~~~d~~~  305 (323)
T d1fcha_         237 PG-YIRSRYNLGISCINLGAHREAVEHFLEALNM--QRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYG  305 (323)
T ss_dssp             TT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--HHTC------CCCCCHHHHHHHHHHHHHHTCGGGHH
T ss_pred             hc-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCcChhhhhhhHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence            65 7888889999999999999998888766554  55332            2344555665566665544

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=1.2e-14  Score=160.24  Aligned_cols=273  Identities=9%  Similarity=-0.047  Sum_probs=204.9

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHH
Q 000951          669 FTCLVDGLFKAGQSKAAMHISKIMDKEGVYPDTIAFNAVMDGFSRMGNMMMANDLLSTMRSRKLCP-SLATYNILLHGYS  747 (1211)
Q Consensus       669 ~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~  747 (1211)
                      ....+..+.+.|++++|+..|+.+++.. +.+...|..+..+|...|++++|...|.++.+.  .| +...|..++.+|.
T Consensus        22 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~   98 (323)
T d1fcha_          22 PFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLEL--KPDNQTALMALAVSFT   98 (323)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHhhhcc--cccccccccccccccc
Confidence            3456778899999999999999999873 446788999999999999999999999999864  56 7889999999999


Q ss_pred             ccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCcHHHHHH
Q 000951          748 KKKDLLMCSMLLNTMKMEGLLPDKLTCHSLILGFCETGMLEVGFKFLKKMIAEGTMVDCFTFNVLMRKCCEAGEMGKAFD  827 (1211)
Q Consensus       748 ~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~  827 (1211)
                      ..|++++|++.++++..  ..|+..............                   .+..........+...+.+.+|.+
T Consensus        99 ~~~~~~~A~~~~~~~~~--~~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~a~~  157 (323)
T d1fcha_          99 NESLQRQACEILRDWLR--YTPAYAHLVTPAEEGAGG-------------------AGLGPSKRILGSLLSDSLFLEVKE  157 (323)
T ss_dssp             HTTCHHHHHHHHHHHHH--TSTTTGGGCC----------------------------------CTTHHHHHHHHHHHHHH
T ss_pred             ccccccccccchhhHHH--hccchHHHHHhhhhhhhh-------------------cccccchhhHHHHHHhhHHHHHHH
Confidence            99999999999999988  455432211100000000                   000011111223344567788888


Q ss_pred             HHHHHHHCCCC-CChhhHHHHHHHHHhhcchhhHHHHHHHHHHcCCCCC-hhHHHHHHHHHHhcCChhhHHHHHHHHHHc
Q 000951          828 LFNIMNMLGVV-PDTNTQDAIIMGLKRIAAFQESHFVLRGMAEKGLTPK-CTQYITLINGMCRVGNFQGAFKLKDEMEAL  905 (1211)
Q Consensus       828 ~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~  905 (1211)
                      .|+++++.... .+...+..++..+...|++++|+..|+++++  ..|+ ..++..++.++...|++++|++.|+++++.
T Consensus       158 ~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~  235 (323)
T d1fcha_         158 LFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALS--VRPNDYLLWNKLGATLANGNQSEEAVAAYRRALEL  235 (323)
T ss_dssp             HHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhcccccccchhhHHHHHHHHHHhhhhcccccccc--cccccccchhhhhhcccccccchhHHHHHHHHHHH
Confidence            88887764322 3466788888899999999999999999988  6776 478889999999999999999999999876


Q ss_pred             CCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCccc----------CHHHHHHHHHHhhhhCCHHHHHHH
Q 000951          906 GISSSDVAESAMVRGLAHCGKVEEAMLVLNRMLRMRLVP----------TIATFTTLIHKFCKEAKFVDALKL  968 (1211)
Q Consensus       906 ~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~p----------~~~~~~~L~~~~~~~g~~~~A~~~  968 (1211)
                      . +.+..++..++.+|.+.|++++|++.|+++++..|.-          ....|..+..++...|+.+.+...
T Consensus       236 ~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~l~~al~~~~~~d~~~~~  307 (323)
T d1fcha_         236 Q-PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAA  307 (323)
T ss_dssp             C-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHH
T ss_pred             h-hccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcChhhhhhhHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence            3 5567788999999999999999999999999854331          123567777777777877766544

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.44  E-value=5.3e-12  Score=136.93  Aligned_cols=226  Identities=5%  Similarity=-0.050  Sum_probs=165.0

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHhhHHHHHHHHHhcC-cHHHHHHHHHHHHHCCCCCChhhHHHHHHH
Q 000951          773 TCHSLILGFCETGMLEVGFKFLKKMIAEGTMV-DCFTFNVLMRKCCEAG-EMGKAFDLFNIMNMLGVVPDTNTQDAIIMG  850 (1211)
Q Consensus       773 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~  850 (1211)
                      +++.+...+.+.+.+++|++.++++++.  .| +..+|+..+.++...| ++++|++.++++++.. +.+..+|..++.+
T Consensus        45 a~~~~~~~~~~~e~~~~Al~~~~~ai~l--nP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~-p~~~~a~~~~~~~  121 (315)
T d2h6fa1          45 VYDYFRAVLQRDERSERAFKLTRDAIEL--NAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRVL  121 (315)
T ss_dssp             HHHHHHHHHHHTCCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCchHHHHHHHHHHHHH--CCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHH-HhhhhHHHHHhHH
Confidence            4555666777778888888888888874  34 3567777777777766 4788888888887643 3357788888888


Q ss_pred             HHhhcchhhHHHHHHHHHHcCCCCC-hhHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCC---
Q 000951          851 LKRIAAFQESHFVLRGMAEKGLTPK-CTQYITLINGMCRVGNFQGAFKLKDEMEALGISSSDVAESAMVRGLAHCGK---  926 (1211)
Q Consensus       851 ~~~~g~~~eA~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---  926 (1211)
                      +.+.|++++|+..++++++  ++|+ ..+|..++.++.+.|++++|++.|+++++.+ +.+..+|+.++.++.+.+.   
T Consensus       122 ~~~l~~~~eAl~~~~kal~--~dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~-p~n~~a~~~r~~~l~~~~~~~~  198 (315)
T d2h6fa1         122 VEWLRDPSQELEFIADILN--QDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYND  198 (315)
T ss_dssp             HHHHTCCTTHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCS
T ss_pred             HHhhccHHHHHHHHhhhhh--hhhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHC-CccHHHHHHHHHHHHHccccch
Confidence            8888888888888888888  7785 4788888888888888888888888888773 5667788888877776665   


Q ss_pred             ---HHHHHHHHHHHHhCCcccCHHHHHHHHHHhhhhCCHHHHHHHHHHHHhcCCCCc-hHHHHHHHHHHHhC--CChhHH
Q 000951          927 ---VEEAMLVLNRMLRMRLVPTIATFTTLIHKFCKEAKFVDALKLKGTMELSGVKLD-VVSYNVLISGLCAN--GDVMPA 1000 (1211)
Q Consensus       927 ---~~eA~~~~~~~~~~~~~p~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~--g~~~~a 1000 (1211)
                         +++|++.+.++++.+|. +..+|..++.++...| .+++.+.++........++ ...+..++..|...  +..+.+
T Consensus       199 ~~~~~~ai~~~~~al~~~P~-~~~~~~~l~~ll~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y~~~~~~~~~~~  276 (315)
T d2h6fa1         199 RAVLEREVQYTLEMIKLVPH-NESAWNYLKGILQDRG-LSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNK  276 (315)
T ss_dssp             HHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTTTC-GGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSSH
T ss_pred             hhhhHHhHHHHHHHHHhCCC-chHHHHHHHHHHHhcC-hHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHHHHhcCHHHH
Confidence               67899999999998876 8899999988876544 6788887776665522222 23455666666432  444455


Q ss_pred             HHHHHH
Q 000951         1001 FELYEE 1006 (1211)
Q Consensus      1001 ~~~~~~ 1006 (1211)
                      ...+++
T Consensus       277 ~~~~~k  282 (315)
T d2h6fa1         277 EDILNK  282 (315)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            544443

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.37  E-value=2.6e-11  Score=131.31  Aligned_cols=215  Identities=8%  Similarity=0.003  Sum_probs=171.7

Q ss_pred             HHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcC-ChHHHHHHHHHHHHcCCCCCHhhHHHHH
Q 000951          736 LATYNILLHGYSKKKDLLMCSMLLNTMKMEGLLP-DKLTCHSLILGFCETG-MLEVGFKFLKKMIAEGTMVDCFTFNVLM  813 (1211)
Q Consensus       736 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~l~  813 (1211)
                      ...++.+...+.+.+.+++|++.++++++  +.| +..+|+..+.++...| ++++|+..++++++.. +-+..+|..++
T Consensus        43 ~~a~~~~~~~~~~~e~~~~Al~~~~~ai~--lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~-p~~~~a~~~~~  119 (315)
T d2h6fa1          43 RDVYDYFRAVLQRDERSERAFKLTRDAIE--LNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRR  119 (315)
T ss_dssp             HHHHHHHHHHHHHTCCCHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCchHHHHHHHHHHHH--HCCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHH-HhhhhHHHHHh
Confidence            55677778888888999999999999998  677 4557788888887776 4899999999998853 23477888899


Q ss_pred             HHHHhcCcHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhcchhhHHHHHHHHHHcCCCCC-hhHHHHHHHHHHhcCC-
Q 000951          814 RKCCEAGEMGKAFDLFNIMNMLGVVPDTNTQDAIIMGLKRIAAFQESHFVLRGMAEKGLTPK-CTQYITLINGMCRVGN-  891 (1211)
Q Consensus       814 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~-  891 (1211)
                      .++.+.|++++|++.|+++++.. +.+...|..++..+.+.|++++|+..|+++++  ++|+ ..+|..++.++...+. 
T Consensus       120 ~~~~~l~~~~eAl~~~~kal~~d-p~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~--~~p~n~~a~~~r~~~l~~~~~~  196 (315)
T d2h6fa1         120 VLVEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLK--EDVRNNSVWNQRYFVISNTTGY  196 (315)
T ss_dssp             HHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCS
T ss_pred             HHHHhhccHHHHHHHHhhhhhhh-hcchHHHHHHHHHHHHHHhhHHHHHHHHHHHH--HCCccHHHHHHHHHHHHHcccc
Confidence            99999999999999999998754 34588899999999999999999999999999  8885 4778888888777665 


Q ss_pred             -----hhhHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCccc-CHHHHHHHHHHhhh
Q 000951          892 -----FQGAFKLKDEMEALGISSSDVAESAMVRGLAHCGKVEEAMLVLNRMLRMRLVP-TIATFTTLIHKFCK  958 (1211)
Q Consensus       892 -----~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~p-~~~~~~~L~~~~~~  958 (1211)
                           +++|++.+.++++.. |.+..+|..++.++...| .+++.+.++++++..+.+ +...+..++.+|..
T Consensus       197 ~~~~~~~~ai~~~~~al~~~-P~~~~~~~~l~~ll~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y~~  267 (315)
T d2h6fa1         197 NDRAVLEREVQYTLEMIKLV-PHNESAWNYLKGILQDRG-LSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYED  267 (315)
T ss_dssp             CSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTC-GGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHH
T ss_pred             chhhhhHHhHHHHHHHHHhC-CCchHHHHHHHHHHHhcC-hHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHH
Confidence                 578999999998773 667888888887766544 688888998888876654 45566666666543

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=99.29  E-value=6.8e-10  Score=123.19  Aligned_cols=265  Identities=12%  Similarity=-0.034  Sum_probs=156.9

Q ss_pred             HHHHHccCChHHHHHHHHHHHHCCCCCC------HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-CC----HhhHHH
Q 000951          743 LHGYSKKKDLLMCSMLLNTMKMEGLLPD------KLTCHSLILGFCETGMLEVGFKFLKKMIAEGTM-VD----CFTFNV  811 (1211)
Q Consensus       743 ~~~~~~~g~~~~A~~~~~~~~~~g~~p~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~----~~~~~~  811 (1211)
                      ...+...|++++|++.+++.++.  .|+      ..++..++.+|...|++++|+..++++++.... ++    ...+..
T Consensus        19 A~~~~~~g~~~~A~~~~~~aL~~--~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~   96 (366)
T d1hz4a_          19 AQVAINDGNPDEAERLAKLALEE--LPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQ   96 (366)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHT--CCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHhh--CcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHH
Confidence            34455566666666666666552  222      123444556666666666666666665542100 11    233444


Q ss_pred             HHHHHHhcCcHHHHHHHHHHHHH----CCCCCC---hhhHHHHHHHHHhhcchhhHHHHHHHHHHcCCCC----ChhHHH
Q 000951          812 LMRKCCEAGEMGKAFDLFNIMNM----LGVVPD---TNTQDAIIMGLKRIAAFQESHFVLRGMAEKGLTP----KCTQYI  880 (1211)
Q Consensus       812 l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~---~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~g~~p----~~~~~~  880 (1211)
                      +...+...|++..|.+.+.+...    ......   ...+..++..+...|++++|...+.+........    ...++.
T Consensus        97 ~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~  176 (366)
T d1hz4a_          97 QSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLA  176 (366)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHH
Confidence            55566666677766666665532    111111   2244556666777777777777777766522211    124455


Q ss_pred             HHHHHHHhcCChhhHHHHHHHHHHc--CCCC----chHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCccc---CHHHHHH
Q 000951          881 TLINGMCRVGNFQGAFKLKDEMEAL--GISS----SDVAESAMVRGLAHCGKVEEAMLVLNRMLRMRLVP---TIATFTT  951 (1211)
Q Consensus       881 ~l~~~~~~~g~~~eA~~~~~~~~~~--~~~~----~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~p---~~~~~~~  951 (1211)
                      ..+..+...+++.++...+.++...  ....    ....+..++..+...|++++|...++++++..+.+   ....+..
T Consensus       177 ~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~  256 (366)
T d1hz4a_         177 MLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRN  256 (366)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHH
T ss_pred             HHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHH
Confidence            5666677777777777777776532  1111    12234556677777888888888888777654432   2345667


Q ss_pred             HHHHhhhhCCHHHHHHHHHHHH----hcCCCCchH-HHHHHHHHHHhCCChhHHHHHHHHHHH
Q 000951          952 LIHKFCKEAKFVDALKLKGTME----LSGVKLDVV-SYNVLISGLCANGDVMPAFELYEEMKH 1009 (1211)
Q Consensus       952 L~~~~~~~g~~~~A~~~~~~~~----~~~~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~ 1009 (1211)
                      ++.++...|++++|...++...    ..+..|+.. .+..++.+|...|++++|.+.+++.++
T Consensus       257 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~  319 (366)
T d1hz4a_         257 IARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK  319 (366)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            7888888888888888776543    234445433 667777888888888888888877654

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.28  E-value=1.4e-11  Score=135.85  Aligned_cols=261  Identities=9%  Similarity=-0.078  Sum_probs=164.6

Q ss_pred             ChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHH----------HccCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHh
Q 000951          716 NMMMANDLLSTMRSRKLCP-SLATYNILLHGY----------SKKKDLLMCSMLLNTMKMEGLLP-DKLTCHSLILGFCE  783 (1211)
Q Consensus       716 ~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~----------~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~  783 (1211)
                      ..++|..+++++.+.  .| +...|+.....+          ...|.+++|+..++.+++  ..| +...|..++.++..
T Consensus        44 ~~~~al~~~~~~l~~--~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~--~~pk~~~~~~~~~~~~~~  119 (334)
T d1dcea1          44 LDESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLR--VNPKSYGTWHHRCWLLSR  119 (334)
T ss_dssp             CSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHT
T ss_pred             ccHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHH--hCCCcHHHHHHhhHHHHH
Confidence            346677777776643  45 344454433332          223446777777777776  345 44556666666555


Q ss_pred             cC--ChHHHHHHHHHHHHcCCCCCHhhH-HHHHHHHHhcCcHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhcchhhH
Q 000951          784 TG--MLEVGFKFLKKMIAEGTMVDCFTF-NVLMRKCCEAGEMGKAFDLFNIMNMLGVVPDTNTQDAIIMGLKRIAAFQES  860 (1211)
Q Consensus       784 ~g--~~~~A~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA  860 (1211)
                      .+  ++++|+..++++++... ++...+ ...+.++...+.+++|++.++++++.+ +.+...|+.++.++.+.|++++|
T Consensus       120 ~~~~~~~~a~~~~~~al~~~~-~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~-p~~~~a~~~l~~~~~~~~~~~~A  197 (334)
T d1dcea1         120 LPEPNWARELELCARFLEADE-RNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQPDS  197 (334)
T ss_dssp             CSSCCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHHHHHHHHHHSCCCCS
T ss_pred             hccccHHHHHHHHHHHHhhCc-hhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCHHHH
Confidence            54  36777777777777432 233333 344466667777888888777777644 23567777777788888877777


Q ss_pred             HHHHHHHHHcCCCCChhHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 000951          861 HFVLRGMAEKGLTPKCTQYITLINGMCRVGNFQGAFKLKDEMEALGISSSDVAESAMVRGLAHCGKVEEAMLVLNRMLRM  940 (1211)
Q Consensus       861 ~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~  940 (1211)
                      ...+.+.++  +.|+.   ......+...+..+++...|.+.+... ++....+..++..+...|++++|...+.++++.
T Consensus       198 ~~~~~~~~~--~~~~~---~~~~~~~~~l~~~~~a~~~~~~~l~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  271 (334)
T d1dcea1         198 GPQGRLPEN--VLLKE---LELVQNAFFTDPNDQSAWFYHRWLLGR-AEPLFRCELSVEKSTVLQSELESCKELQELEPE  271 (334)
T ss_dssp             SSCCSSCHH--HHHHH---HHHHHHHHHHCSSCSHHHHHHHHHHSC-CCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHhHH--hHHHH---HHHHHHHHHhcchhHHHHHHHHHHHhC-cchhhHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence            766666555  33332   122333445666777777777776553 444555666667777777788888888777776


Q ss_pred             CcccCHHHHHHHHHHhhhhCCHHHHHHHHHHHHhcCCCCchH-HHHHHHHHH
Q 000951          941 RLVPTIATFTTLIHKFCKEAKFVDALKLKGTMELSGVKLDVV-SYNVLISGL  991 (1211)
Q Consensus       941 ~~~p~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~  991 (1211)
                      +|. +..+|..+|.++...|++++|++.|+...+.  +|+.. .|..|...+
T Consensus       272 ~p~-~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~l--dP~~~~y~~~L~~~~  320 (334)
T d1dcea1         272 NKW-CLLTIILLMRALDPLLYEKETLQYFSTLKAV--DPMRAAYLDDLRSKF  320 (334)
T ss_dssp             CHH-HHHHHHHHHHHHCTGGGHHHHHHHHHHHHHH--CGGGHHHHHHHHHHH
T ss_pred             Cch-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--CcccHHHHHHHHHHH
Confidence            654 6677777888888888888888877766655  77544 445555543

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.24  E-value=1.1e-10  Score=123.27  Aligned_cols=219  Identities=9%  Similarity=-0.060  Sum_probs=121.7

Q ss_pred             hHHHHHHHHHHHHcCCCCC---HhhHHHHHHHHHhcCcHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhcchhhHHHH
Q 000951          787 LEVGFKFLKKMIAEGTMVD---CFTFNVLMRKCCEAGEMGKAFDLFNIMNMLGVVPDTNTQDAIIMGLKRIAAFQESHFV  863 (1211)
Q Consensus       787 ~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~  863 (1211)
                      .+.++..+++++......+   ..++..++.+|.+.|++++|++.|+++++.. +.++.+|+.++.+|.+.|++++|+..
T Consensus        15 ~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~-p~~~~a~~~lg~~~~~~g~~~~A~~~   93 (259)
T d1xnfa_          15 QEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEA   93 (259)
T ss_dssp             HHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccC-CCCHHHHhhhchHHHHHHHHHHhhhh
Confidence            3444444555544311111   2355556667777777777777777776533 23466677777777777777777777


Q ss_pred             HHHHHHcCCCCCh-hHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCc
Q 000951          864 LRGMAEKGLTPKC-TQYITLINGMCRVGNFQGAFKLKDEMEALGISSSDVAESAMVRGLAHCGKVEEAMLVLNRMLRMRL  942 (1211)
Q Consensus       864 ~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~  942 (1211)
                      |+++++  ++|+. .++..++.++...|++++|.+.|+++++.. +.+......++..+.+.+..+.+..+.........
T Consensus        94 ~~~al~--~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (259)
T d1xnfa_          94 FDSVLE--LDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD-PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDK  170 (259)
T ss_dssp             HHHHHH--HCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCC
T ss_pred             hhHHHH--HHhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhc-cccHHHHHHHHHHHHHhhhHHHHHHHHHHhhccch
Confidence            777776  66653 567777777777777777777777776653 33444444455555555555555555454444332


Q ss_pred             ccCHHHHHHHHHHhh----hhCCHHHHHHHHHHHHhcCCCCch-HHHHHHHHHHHhCCChhHHHHHHHHHHHcCCccCh
Q 000951          943 VPTIATFTTLIHKFC----KEAKFVDALKLKGTMELSGVKLDV-VSYNVLISGLCANGDVMPAFELYEEMKHKGLCPNS 1016 (1211)
Q Consensus       943 ~p~~~~~~~L~~~~~----~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~p~~ 1016 (1211)
                      .  ...+.. ...+.    ..+..+.+...+......  .|+. .+|..++..|...|++++|.+.+++.++  ..|+.
T Consensus       171 ~--~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~  242 (259)
T d1xnfa_         171 E--QWGWNI-VEFYLGNISEQTLMERLKADATDNTSL--AEHLSETNFYLGKYYLSLGDLDSATALFKLAVA--NNVHN  242 (259)
T ss_dssp             C--STHHHH-HHHHTTSSCHHHHHHHHHHHCCSHHHH--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TCCTT
T ss_pred             h--hhhhhH-HHHHHHHHHHHHHHHHHHHHHHHhhhc--CcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--cCCCC
Confidence            2  112211 11111    122233333322211111  3433 3667777788888888888888887754  45544

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=99.22  E-value=2.4e-09  Score=118.56  Aligned_cols=201  Identities=13%  Similarity=0.021  Sum_probs=91.7

Q ss_pred             HHHHHHHHHccCChHHHHHHHHHHHHC----CCC--CCH-HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC----CCHh
Q 000951          739 YNILLHGYSKKKDLLMCSMLLNTMKME----GLL--PDK-LTCHSLILGFCETGMLEVGFKFLKKMIAEGTM----VDCF  807 (1211)
Q Consensus       739 ~~~l~~~~~~~g~~~~A~~~~~~~~~~----g~~--p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~----~~~~  807 (1211)
                      +..+...+...|++..|...+.+....    +..  +.. ..+..+...+...|+++.+...+.........    ....
T Consensus        94 ~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~  173 (366)
T d1hz4a_          94 LIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQ  173 (366)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHH
Confidence            334444455555555555555544321    111  111 13334445555666666666666665543111    1122


Q ss_pred             hHHHHHHHHHhcCcHHHHHHHHHHHHHC--CCCCC----hhhHHHHHHHHHhhcchhhHHHHHHHHHHcCCCCC---hhH
Q 000951          808 TFNVLMRKCCEAGEMGKAFDLFNIMNML--GVVPD----TNTQDAIIMGLKRIAAFQESHFVLRGMAEKGLTPK---CTQ  878 (1211)
Q Consensus       808 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~----~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~g~~p~---~~~  878 (1211)
                      .+......+...+++.++...+.+....  .....    ...+..++..+...|++++|...+++..+....++   ...
T Consensus       174 ~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~  253 (366)
T d1hz4a_         174 CLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQ  253 (366)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHH
T ss_pred             HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHH
Confidence            3334444555566666666555544321  00010    12334444455555555566555555544111111   133


Q ss_pred             HHHHHHHHHhcCChhhHHHHHHHHHH----cCCCC-chHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 000951          879 YITLINGMCRVGNFQGAFKLKDEMEA----LGISS-SDVAESAMVRGLAHCGKVEEAMLVLNRMLR  939 (1211)
Q Consensus       879 ~~~l~~~~~~~g~~~eA~~~~~~~~~----~~~~~-~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~  939 (1211)
                      +..++.++...|++++|...+++++.    .+..| ...++..++.+|...|++++|.+.++++++
T Consensus       254 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~  319 (366)
T d1hz4a_         254 WRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK  319 (366)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            44455555555666666655555532    11111 122344455555555555555555555544

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.21  E-value=5.4e-11  Score=130.92  Aligned_cols=265  Identities=9%  Similarity=-0.062  Sum_probs=201.6

Q ss_pred             HHccCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHH----------HHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHH
Q 000951          746 YSKKKDLLMCSMLLNTMKMEGLLPDKL-TCHSLILG----------FCETGMLEVGFKFLKKMIAEGTMVDCFTFNVLMR  814 (1211)
Q Consensus       746 ~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~----------~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~  814 (1211)
                      ....+..++|++++.++++  ..|+.. .|+.....          +...|++++|+.+++++++.+ +.+...+..++.
T Consensus        39 ~~~~~~~~~al~~~~~~l~--~~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~-pk~~~~~~~~~~  115 (334)
T d1dcea1          39 RQAGELDESVLELTSQILG--ANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCW  115 (334)
T ss_dssp             HHTTCCSHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred             HhcccccHHHHHHHHHHHH--HCCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhC-CCcHHHHHHhhH
Confidence            3334445899999999998  668654 44433222          334455889999999999853 335677888888


Q ss_pred             HHHhcCc--HHHHHHHHHHHHHCCCCCChhhH-HHHHHHHHhhcchhhHHHHHHHHHHcCCCCC-hhHHHHHHHHHHhcC
Q 000951          815 KCCEAGE--MGKAFDLFNIMNMLGVVPDTNTQ-DAIIMGLKRIAAFQESHFVLRGMAEKGLTPK-CTQYITLINGMCRVG  890 (1211)
Q Consensus       815 ~~~~~g~--~~~A~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~eA~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g  890 (1211)
                      ++...++  +++|+..++++++.. +++...| ..++..+...+.+++|+..++++++  .+|+ ..+|..++.++...|
T Consensus       116 ~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~--~~p~~~~a~~~l~~~~~~~~  192 (334)
T d1dcea1         116 LLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLIT--RNFSNYSSWHYRSCLLPQLH  192 (334)
T ss_dssp             HHHTCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTT--TTCCCHHHHHHHHHHHHHHS
T ss_pred             HHHHhccccHHHHHHHHHHHHhhC-chhhhhhhhHHHHHHHhccccHHHHHHHHHHHH--cCCCCHHHHHHHHHHHHHhc
Confidence            7777664  899999999998754 2345555 4556788889999999999999998  8886 488999999999999


Q ss_pred             ChhhHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCcccCHHHHHHHHHHhhhhCCHHHHHHHHH
Q 000951          891 NFQGAFKLKDEMEALGISSSDVAESAMVRGLAHCGKVEEAMLVLNRMLRMRLVPTIATFTTLIHKFCKEAKFVDALKLKG  970 (1211)
Q Consensus       891 ~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~p~~~~~~~L~~~~~~~g~~~~A~~~~~  970 (1211)
                      ++++|...++++.+.. +..    ......+...+..++|...+.+++...+. +...+..++..+...|++++|...+.
T Consensus       193 ~~~~A~~~~~~~~~~~-~~~----~~~~~~~~~l~~~~~a~~~~~~~l~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~  266 (334)
T d1dcea1         193 PQPDSGPQGRLPENVL-LKE----LELVQNAFFTDPNDQSAWFYHRWLLGRAE-PLFRCELSVEKSTVLQSELESCKELQ  266 (334)
T ss_dssp             CCCCSSSCCSSCHHHH-HHH----HHHHHHHHHHCSSCSHHHHHHHHHHSCCC-CSSSCCCCHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHhHHhH-HHH----HHHHHHHHHhcchhHHHHHHHHHHHhCcc-hhhHHHHHHHHHHHHhhHHHHHHHHH
Confidence            9999988877765441 111    22334456678888999999999988765 67778889999999999999999977


Q ss_pred             HHHhcCCCCchH-HHHHHHHHHHhCCChhHHHHHHHHHHHcCCccCh-hhHHHHHHHH
Q 000951          971 TMELSGVKLDVV-SYNVLISGLCANGDVMPAFELYEEMKHKGLCPNS-TTYSVLIDAI 1026 (1211)
Q Consensus       971 ~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~p~~-~~~~~l~~~~ 1026 (1211)
                      ...  ...|+.. .+..++.+|...|++++|++.+++..+  +.|+. .-|..+...+
T Consensus       267 ~~~--~~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~--ldP~~~~y~~~L~~~~  320 (334)
T d1dcea1         267 ELE--PENKWCLLTIILLMRALDPLLYEKETLQYFSTLKA--VDPMRAAYLDDLRSKF  320 (334)
T ss_dssp             HHC--TTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHH--HCGGGHHHHHHHHHHH
T ss_pred             HHH--hhCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--HCcccHHHHHHHHHHH
Confidence            544  4478554 889999999999999999999999977  67765 5555554443

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.17  E-value=1.5e-10  Score=122.06  Aligned_cols=200  Identities=12%  Similarity=-0.059  Sum_probs=107.0

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHHHHHCCCCCChhhHHHHHHHHH
Q 000951          773 TCHSLILGFCETGMLEVGFKFLKKMIAEGTMVDCFTFNVLMRKCCEAGEMGKAFDLFNIMNMLGVVPDTNTQDAIIMGLK  852 (1211)
Q Consensus       773 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~  852 (1211)
                      ++..++.+|...|++++|+..|+++++.. +.++.++..++.+|.+.|++++|++.|+++++.. +.+..+|..++.+|.
T Consensus        39 ~~~~~G~~y~~~g~~~~A~~~~~~al~l~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~  116 (259)
T d1xnfa_          39 LLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAHLNRGIALY  116 (259)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHhhccC-CCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHH-hhhhhhHHHHHHHHH
Confidence            44555666666666666666666666632 1235566666666666666666666666666532 123556666666666


Q ss_pred             hhcchhhHHHHHHHHHHcCCCCCh-hHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCchHHHHHHHHHHHhc----CCH
Q 000951          853 RIAAFQESHFVLRGMAEKGLTPKC-TQYITLINGMCRVGNFQGAFKLKDEMEALGISSSDVAESAMVRGLAHC----GKV  927 (1211)
Q Consensus       853 ~~g~~~eA~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~  927 (1211)
                      ..|++++|+..|++.++  ..|+. .....+..++...+..+.+..+.......  .+....+. ++..+...    +..
T Consensus       117 ~~g~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-~~~~~~~~~~~~~~~  191 (259)
T d1xnfa_         117 YGGRDKLAQDDLLAFYQ--DDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKS--DKEQWGWN-IVEFYLGNISEQTLM  191 (259)
T ss_dssp             HTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHS--CCCSTHHH-HHHHHTTSSCHHHHH
T ss_pred             HHhhHHHHHHHHHHHHh--hccccHHHHHHHHHHHHHhhhHHHHHHHHHHhhcc--chhhhhhh-HHHHHHHHHHHHHHH
Confidence            66777777777766666  44532 33333444444445444444444444332  11111111 11111111    112


Q ss_pred             HHHHHHHHHHHhCCcccCHHHHHHHHHHhhhhCCHHHHHHHHHHHHhcCCCCchH
Q 000951          928 EEAMLVLNRMLRMRLVPTIATFTTLIHKFCKEAKFVDALKLKGTMELSGVKLDVV  982 (1211)
Q Consensus       928 ~eA~~~~~~~~~~~~~p~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~  982 (1211)
                      +.+...+.......+. ...+|..||.+|...|++++|+..|+.....  .|+..
T Consensus       192 ~~~~~~~~~~~~~~~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~  243 (259)
T d1xnfa_         192 ERLKADATDNTSLAEH-LSETNFYLGKYYLSLGDLDSATALFKLAVAN--NVHNF  243 (259)
T ss_dssp             HHHHHHCCSHHHHHHH-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CCTTC
T ss_pred             HHHHHHHHHhhhcCcc-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc--CCCCH
Confidence            3333332222222211 3456777888888888888888887765544  67544

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.01  E-value=3.6e-08  Score=106.06  Aligned_cols=187  Identities=10%  Similarity=0.039  Sum_probs=117.7

Q ss_pred             CChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhcchhhHHHHH
Q 000951          785 GMLEVGFKFLKKMIAEGTMVDCFTFNVLMRKCCEAGEMGKAFDLFNIMNMLGVVPDTNTQDAIIMGLKRIAAFQESHFVL  864 (1211)
Q Consensus       785 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~  864 (1211)
                      +..++|..+|+++++...+.+...+..++..+.+.|++++|..+|+++++.........|...+..+.+.|+.++|..+|
T Consensus        78 ~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~  157 (308)
T d2onda1          78 LFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIF  157 (308)
T ss_dssp             HHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHH
Confidence            34566777777777643344455666677777777777777777777775432222445677777777777777777777


Q ss_pred             HHHHHcCCCCCh-hHHHHHHHH-HHhcCChhhHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCc
Q 000951          865 RGMAEKGLTPKC-TQYITLING-MCRVGNFQGAFKLKDEMEALGISSSDVAESAMVRGLAHCGKVEEAMLVLNRMLRMRL  942 (1211)
Q Consensus       865 ~~~~~~g~~p~~-~~~~~l~~~-~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~  942 (1211)
                      +++++  ..|.. ..|...+.. +...|+.+.|..+|+++++. .+.+...|...++.+.+.|++++|..+|+++++..+
T Consensus       158 ~~al~--~~~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~-~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~  234 (308)
T d2onda1         158 KKARE--DARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKK-YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGS  234 (308)
T ss_dssp             HHHHT--STTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSS
T ss_pred             HHHHH--hCCCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh-hhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Confidence            77776  44532 444444443 23456777777777777654 355566677777777777777777777777766543


Q ss_pred             c-c--CHHHHHHHHHHhhhhCCHHHHHHHHHHHHh
Q 000951          943 V-P--TIATFTTLIHKFCKEAKFVDALKLKGTMEL  974 (1211)
Q Consensus       943 ~-p--~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~  974 (1211)
                      . |  ....|...+.--..+|+.+.+..+++.+.+
T Consensus       235 ~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~  269 (308)
T d2onda1         235 LPPEKSGEIWARFLAFESNIGDLASILKVEKRRFT  269 (308)
T ss_dssp             SCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred             CChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            2 2  234566666655666777777766665443

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.88  E-value=1.5e-07  Score=101.01  Aligned_cols=186  Identities=10%  Similarity=-0.017  Sum_probs=92.3

Q ss_pred             HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHH
Q 000951          682 SKAAMHISKIMDKEGVYPDTIAFNAVMDGFSRMGNMMMANDLLSTMRSRKLCPSLATYNILLHGYSKKKDLLMCSMLLNT  761 (1211)
Q Consensus       682 ~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~  761 (1211)
                      .++|..+|+..++...+.+...|...+..+.+.|+++.|..+|+++.+.........|..++....+.|+++.|.++|.+
T Consensus        80 ~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~  159 (308)
T d2onda1          80 SDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKK  159 (308)
T ss_dssp             HHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence            35555566665544334444555555555556666666666666665321111233455566666666666666666666


Q ss_pred             HHHCCCCCCHHHHHHHHH-HHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHHHHHCCC-CC
Q 000951          762 MKMEGLLPDKLTCHSLIL-GFCETGMLEVGFKFLKKMIAEGTMVDCFTFNVLMRKCCEAGEMGKAFDLFNIMNMLGV-VP  839 (1211)
Q Consensus       762 ~~~~g~~p~~~~~~~l~~-~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~  839 (1211)
                      +++.+.. +...|...+. -+...|+.+.|..+|+.+++. .+.+...+...++.+...|++++|..+|++++.... .|
T Consensus       160 al~~~~~-~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~-~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~  237 (308)
T d2onda1         160 AREDART-RHHVYVTAALMEYYCSKDKSVAFKIFELGLKK-YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPP  237 (308)
T ss_dssp             HHTSTTC-CTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCG
T ss_pred             HHHhCCC-cHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh-hhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCh
Confidence            6553211 2222222222 223345566666666666554 223345555555555566666666666665554321 11


Q ss_pred             C--hhhHHHHHHHHHhhcchhhHHHHHHHHHH
Q 000951          840 D--TNTQDAIIMGLKRIAAFQESHFVLRGMAE  869 (1211)
Q Consensus       840 ~--~~~~~~l~~~~~~~g~~~eA~~~~~~~~~  869 (1211)
                      +  ...|...+..-..+|+.+.+..+++++.+
T Consensus       238 ~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~  269 (308)
T d2onda1         238 EKSGEIWARFLAFESNIGDLASILKVEKRRFT  269 (308)
T ss_dssp             GGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            1  22344444444444555555555555444

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.84  E-value=2.3e-08  Score=98.48  Aligned_cols=126  Identities=12%  Similarity=-0.026  Sum_probs=92.4

Q ss_pred             HHHHHhcCcHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhcchhhHHHHHHHHHHcCCCCCh-hHHHHHHHHHHhcCC
Q 000951          813 MRKCCEAGEMGKAFDLFNIMNMLGVVPDTNTQDAIIMGLKRIAAFQESHFVLRGMAEKGLTPKC-TQYITLINGMCRVGN  891 (1211)
Q Consensus       813 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~  891 (1211)
                      +..+...|++++|++.|.++.    +|++.+|..++.+|...|++++|+..|+++++  ++|+. ..|..++.++.+.|+
T Consensus        12 g~~~~~~~d~~~Al~~~~~i~----~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~--ldp~~~~a~~~~g~~~~~~g~   85 (192)
T d1hh8a_          12 GVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSIN--RDKHLAVAYFQRGMLYYQTEK   85 (192)
T ss_dssp             HHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHCCCHHHHHHHHHhcC----CCCHHHHHHHHHHHHHcCCchhHHHHHHHHHH--HhhhhhhhHHHHHHHHHhhcc
Confidence            455677788888888877642    46677788888888888888888888888887  77754 778888888888888


Q ss_pred             hhhHHHHHHHHHHcCCCC---------------chHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCccc
Q 000951          892 FQGAFKLKDEMEALGISS---------------SDVAESAMVRGLAHCGKVEEAMLVLNRMLRMRLVP  944 (1211)
Q Consensus       892 ~~eA~~~~~~~~~~~~~~---------------~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~p  944 (1211)
                      +++|++.|++++......               ...++..++.++.+.|++++|.+.++++++..+.|
T Consensus        86 ~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~~  153 (192)
T d1hh8a_          86 YDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP  153 (192)
T ss_dssp             HHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred             HHHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence            888888888886531110               12456677778888888888888888888776553

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.79  E-value=3.8e-08  Score=87.85  Aligned_cols=89  Identities=16%  Similarity=0.040  Sum_probs=44.5

Q ss_pred             HHHHHhcCChhhHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCcccCHHHHHHHHHHhhhhCCH
Q 000951          883 INGMCRVGNFQGAFKLKDEMEALGISSSDVAESAMVRGLAHCGKVEEAMLVLNRMLRMRLVPTIATFTTLIHKFCKEAKF  962 (1211)
Q Consensus       883 ~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~p~~~~~~~L~~~~~~~g~~  962 (1211)
                      ++.+...|++++|+..|+++++.. |.+..+|..++.+|...|++++|+..++++++.+|. ++..|..+|.++...|++
T Consensus        10 g~~~~~~g~~~eAi~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~g~~~~~~~~~   87 (117)
T d1elwa_          10 GNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD-WGKGYSRKAAALEFLNRF   87 (117)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHhcC-CcchhhhhcccccccccccccccchhhhhHHHhccc-hhhHHHHHHHHHHHccCH
Confidence            444444555555555555554442 344444555555555555555555555555554443 455555555555555555


Q ss_pred             HHHHHHHHHHH
Q 000951          963 VDALKLKGTME  973 (1211)
Q Consensus       963 ~~A~~~~~~~~  973 (1211)
                      ++|+..|+...
T Consensus        88 ~~A~~~~~~a~   98 (117)
T d1elwa_          88 EEAKRTYEEGL   98 (117)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            55555544433

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.79  E-value=4.2e-08  Score=87.54  Aligned_cols=107  Identities=13%  Similarity=0.066  Sum_probs=73.9

Q ss_pred             HHHHHHHHhhcchhhHHHHHHHHHHcCCCCC-hhHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCchHHHHHHHHHHHh
Q 000951          845 DAIIMGLKRIAAFQESHFVLRGMAEKGLTPK-CTQYITLINGMCRVGNFQGAFKLKDEMEALGISSSDVAESAMVRGLAH  923 (1211)
Q Consensus       845 ~~l~~~~~~~g~~~eA~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~  923 (1211)
                      ..-+..+.+.|++++|+..|+++++  .+|+ ...|..++.++...|++++|+..++++++.+ +.+..+|..++.++..
T Consensus         7 ~~~g~~~~~~g~~~eAi~~~~~al~--~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~g~~~~~   83 (117)
T d1elwa_           7 KEKGNKALSVGNIDDALQCYSEAIK--LDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAALEF   83 (117)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHh--cCCcchhhhhcccccccccccccccchhhhhHHHhc-cchhhHHHHHHHHHHH
Confidence            4456667777777777777777777  6664 3667777777777777777777777777663 5566677777777777


Q ss_pred             cCCHHHHHHHHHHHHhCCcccCHHHHHHHHHH
Q 000951          924 CGKVEEAMLVLNRMLRMRLVPTIATFTTLIHK  955 (1211)
Q Consensus       924 ~g~~~eA~~~~~~~~~~~~~p~~~~~~~L~~~  955 (1211)
                      .|++++|+..|+++++..|. ++.++..+..+
T Consensus        84 ~~~~~~A~~~~~~a~~~~p~-~~~~~~~l~~l  114 (117)
T d1elwa_          84 LNRFEEAKRTYEEGLKHEAN-NPQLKEGLQNM  114 (117)
T ss_dssp             TTCHHHHHHHHHHHHTTCTT-CHHHHHHHHHH
T ss_pred             ccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHH
Confidence            77777777777777776655 66666555543

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.76  E-value=1.6e-07  Score=92.25  Aligned_cols=119  Identities=11%  Similarity=-0.017  Sum_probs=56.2

Q ss_pred             HHhcCChhhHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCcccCHHHHHHHHHHhhhhCCHHHH
Q 000951          886 MCRVGNFQGAFKLKDEMEALGISSSDVAESAMVRGLAHCGKVEEAMLVLNRMLRMRLVPTIATFTTLIHKFCKEAKFVDA  965 (1211)
Q Consensus       886 ~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~p~~~~~~~L~~~~~~~g~~~~A  965 (1211)
                      +...|++++|++.|+++    .+|++.+|..+|.+|...|++++|++.|+++++.+|. ++.+|..+|.+|.+.|++++|
T Consensus        15 ~~~~~d~~~Al~~~~~i----~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~-~~~a~~~~g~~~~~~g~~~~A   89 (192)
T d1hh8a_          15 AADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKH-LAVAYFQRGMLYYQTEKYDLA   89 (192)
T ss_dssp             HHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHCCCHHHHHHHHHhc----CCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhh-hhhhHHHHHHHHHhhccHHHH
Confidence            34444444444444432    1334444444444444455555555555555444433 444444455555555555555


Q ss_pred             HHHHHHHHhc------------C--CCCc-hHHHHHHHHHHHhCCChhHHHHHHHHHHH
Q 000951          966 LKLKGTMELS------------G--VKLD-VVSYNVLISGLCANGDVMPAFELYEEMKH 1009 (1211)
Q Consensus       966 ~~~~~~~~~~------------~--~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 1009 (1211)
                      +..|+.....            +  ..++ ..+++.++.+|...|+|++|.+.++...+
T Consensus        90 ~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~  148 (192)
T d1hh8a_          90 IKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATS  148 (192)
T ss_dssp             HHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence            4444432211            0  0111 12445566666666666666666665544

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.74  E-value=1.3e-07  Score=100.56  Aligned_cols=59  Identities=12%  Similarity=-0.089  Sum_probs=27.0

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhCCcccC------HHHHHHHHHHhhhhCCHHHHHHHHHHH
Q 000951          914 ESAMVRGLAHCGKVEEAMLVLNRMLRMRLVPT------IATFTTLIHKFCKEAKFVDALKLKGTM  972 (1211)
Q Consensus       914 ~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~p~------~~~~~~L~~~~~~~g~~~~A~~~~~~~  972 (1211)
                      +..++.++...|++++|++.|++++...+...      ...+..++.++...|+++.|...++..
T Consensus       161 ~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~  225 (290)
T d1qqea_         161 FIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEG  225 (290)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGG
T ss_pred             HHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence            34445555555555555555555554332210      012333444444555555555554433

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.74  E-value=8.6e-08  Score=101.96  Aligned_cols=196  Identities=9%  Similarity=-0.081  Sum_probs=136.6

Q ss_pred             HHHHHHHhcCChHHHHHHHHHHHHc----CCCCC-HhhHHHHHHHHHhcCcHHHHHHHHHHHHHCCCCC-C----hhhHH
Q 000951          776 SLILGFCETGMLEVGFKFLKKMIAE----GTMVD-CFTFNVLMRKCCEAGEMGKAFDLFNIMNMLGVVP-D----TNTQD  845 (1211)
Q Consensus       776 ~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~----~~~~~  845 (1211)
                      ..+..|...+++++|.+.|.++.+.    +-+++ ..++..++.+|.+.|++++|++.|+++.+..... +    ..++.
T Consensus        42 ~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~  121 (290)
T d1qqea_          42 QAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKF  121 (290)
T ss_dssp             HHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHH
Confidence            3578899999999999999998874    11122 4578888999999999999999999886521111 1    44567


Q ss_pred             HHHHHHHh-hcchhhHHHHHHHHHHc----CCCCC-hhHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCch------HH
Q 000951          846 AIIMGLKR-IAAFQESHFVLRGMAEK----GLTPK-CTQYITLINGMCRVGNFQGAFKLKDEMEALGISSSD------VA  913 (1211)
Q Consensus       846 ~l~~~~~~-~g~~~eA~~~~~~~~~~----g~~p~-~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~------~~  913 (1211)
                      .++..|.. .|++++|+..|+++++.    +..+. ..++..++..+...|++++|++.|+++.........      ..
T Consensus       122 ~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~  201 (290)
T d1qqea_         122 ELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDY  201 (290)
T ss_dssp             HHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHH
T ss_pred             HHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHH
Confidence            77777754 69999999999998751    11121 266888999999999999999999999865322211      23


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhCCccc-C---HHHHHHHHHHhhh--hCCHHHHHHHHHH
Q 000951          914 ESAMVRGLAHCGKVEEAMLVLNRMLRMRLVP-T---IATFTTLIHKFCK--EAKFVDALKLKGT  971 (1211)
Q Consensus       914 ~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~p-~---~~~~~~L~~~~~~--~g~~~~A~~~~~~  971 (1211)
                      +..++..+...|+++.|...++++.+.+|.. +   ......|+.++..  .+.+++|+..|+.
T Consensus       202 ~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~~~~d~e~~~eai~~y~~  265 (290)
T d1qqea_         202 FLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDN  265 (290)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTT
T ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence            4566777788899999999999998876431 2   1233445555443  2346666666553

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.69  E-value=1.2e-07  Score=90.16  Aligned_cols=103  Identities=10%  Similarity=-0.012  Sum_probs=57.3

Q ss_pred             HHHHHhhcchhhHHHHHHHHHHcCCCCCh-hHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCC
Q 000951          848 IMGLKRIAAFQESHFVLRGMAEKGLTPKC-TQYITLINGMCRVGNFQGAFKLKDEMEALGISSSDVAESAMVRGLAHCGK  926 (1211)
Q Consensus       848 ~~~~~~~g~~~eA~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~  926 (1211)
                      +..|.+.|++++|+..|+++++  ++|+. ..|..++.++...|++++|+..|+++++.. +.+..+|..++.++...|+
T Consensus        17 gn~~~~~~~y~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~-p~~~~a~~~~g~~~~~~g~   93 (159)
T d1a17a_          17 ANDYFKAKDYENAIKFYSQAIE--LNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGK   93 (159)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHcCCHHHHHHHhhhccc--cchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHc-ccchHHHHHHHHHHHHcCC
Confidence            4445555666666666666665  45542 555555666666666666666666665542 4444555555666666666


Q ss_pred             HHHHHHHHHHHHhCCcccCHHHHHHHHH
Q 000951          927 VEEAMLVLNRMLRMRLVPTIATFTTLIH  954 (1211)
Q Consensus       927 ~~eA~~~~~~~~~~~~~p~~~~~~~L~~  954 (1211)
                      +++|+..|+++++.+|. +..++..+..
T Consensus        94 ~~eA~~~~~~a~~~~p~-~~~~~~~l~~  120 (159)
T d1a17a_          94 FRAALRDYETVVKVKPH-DKDAKMKYQE  120 (159)
T ss_dssp             HHHHHHHHHHHHHHSTT-CHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCC-CHHHHHHHHH
Confidence            66666666666555443 4444444433

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.67  E-value=1.3e-07  Score=89.90  Aligned_cols=120  Identities=13%  Similarity=0.018  Sum_probs=94.9

Q ss_pred             HHHHHHHHHhcCChhhHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCcccCHHHHHHHHHHhhh
Q 000951          879 YITLINGMCRVGNFQGAFKLKDEMEALGISSSDVAESAMVRGLAHCGKVEEAMLVLNRMLRMRLVPTIATFTTLIHKFCK  958 (1211)
Q Consensus       879 ~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~p~~~~~~~L~~~~~~  958 (1211)
                      +...++.|.+.|++++|+..|+++++.. |.+..+|..++.++...|++++|+..|+++++.+|. +..+|..+|.++..
T Consensus        13 l~~~gn~~~~~~~y~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~-~~~a~~~~g~~~~~   90 (159)
T d1a17a_          13 LKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK-YIKGYYRRAASNMA   90 (159)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHhhhccccc-hhhhhhhhhhHHHHHhccccchHHHHHHHHHHHccc-chHHHHHHHHHHHH
Confidence            4556778889999999999999999874 678888999999999999999999999999998866 88899999999999


Q ss_pred             hCCHHHHHHHHHHHHhcCCCCchH-HHHHHHHH--HHhCCChhHHHH
Q 000951          959 EAKFVDALKLKGTMELSGVKLDVV-SYNVLISG--LCANGDVMPAFE 1002 (1211)
Q Consensus       959 ~g~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~--~~~~g~~~~a~~ 1002 (1211)
                      .|++++|+..++.....  .|+.. .+..+..+  ....+.++++..
T Consensus        91 ~g~~~eA~~~~~~a~~~--~p~~~~~~~~l~~~~~~~~~~~~~~a~~  135 (159)
T d1a17a_          91 LGKFRAALRDYETVVKV--KPHDKDAKMKYQECNKIVKQKAFERAIA  135 (159)
T ss_dssp             TTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            99999999998877766  77554 44444433  223334444443

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.65  E-value=4.1e-08  Score=98.10  Aligned_cols=100  Identities=10%  Similarity=-0.049  Sum_probs=73.0

Q ss_pred             CChhHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCcccCHHHHHHHH
Q 000951          874 PKCTQYITLINGMCRVGNFQGAFKLKDEMEALGISSSDVAESAMVRGLAHCGKVEEAMLVLNRMLRMRLVPTIATFTTLI  953 (1211)
Q Consensus       874 p~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~p~~~~~~~L~  953 (1211)
                      |+...+...++.+...|++++|+..|+++++.. |.+..+|..++.+|.+.|++++|+..|+++++.+|. ++.+|..+|
T Consensus         2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~-p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~-~~~a~~~lg   79 (201)
T d2c2la1           2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFLG   79 (201)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTT-CHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCC-cHHHHHHHH
Confidence            555556667777777777777777777777663 566677777777777777777777777777777655 677777777


Q ss_pred             HHhhhhCCHHHHHHHHHHHHhc
Q 000951          954 HKFCKEAKFVDALKLKGTMELS  975 (1211)
Q Consensus       954 ~~~~~~g~~~~A~~~~~~~~~~  975 (1211)
                      .+|...|++++|+..|+.....
T Consensus        80 ~~~~~l~~~~~A~~~~~~al~l  101 (201)
T d2c2la1          80 QCQLEMESYDEAIANLQRAYSL  101 (201)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHHh
Confidence            7777778888887777755443

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=98.63  E-value=1.4e-05  Score=83.00  Aligned_cols=60  Identities=15%  Similarity=0.071  Sum_probs=28.2

Q ss_pred             HHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHH
Q 000951          737 ATYNILLHGYSKKKDLLMCSMLLNTMKMEGLLPDKLTCHSLILGFCE----TGMLEVGFKFLKKMIA  799 (1211)
Q Consensus       737 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~  799 (1211)
                      ..+..|+..+.+.|++++|++.|+++.+.|   +..++..|...|..    ..++..|...+.....
T Consensus         3 ~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g---~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~   66 (265)
T d1ouva_           3 KELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACD   66 (265)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcchhHHHHHHhhccccc
Confidence            344444444555555555555555554432   33333334444443    3344555555555444

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=98.61  E-value=1.5e-05  Score=82.81  Aligned_cols=225  Identities=9%  Similarity=-0.028  Sum_probs=116.9

Q ss_pred             HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc----cCChHHHHHHHHHHHHCCCCCCHHHHHH
Q 000951          701 TIAFNAVMDGFSRMGNMMMANDLLSTMRSRKLCPSLATYNILLHGYSK----KKDLLMCSMLLNTMKMEGLLPDKLTCHS  776 (1211)
Q Consensus       701 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~g~~p~~~~~~~  776 (1211)
                      +..+..|...+.+.|++++|..+|++..+.|   +..++..|+..|..    ..++..|...+......+   +......
T Consensus         2 p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g---~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~---~~~a~~~   75 (265)
T d1ouva_           2 PKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHL   75 (265)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc---ccchhhc
Confidence            3344445555555566666666666665443   44555555555554    456666666666665543   2222333


Q ss_pred             HHHHHHh----cCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHh----cCcHHHHHHHHHHHHHCCCCCChhhHHHHH
Q 000951          777 LILGFCE----TGMLEVGFKFLKKMIAEGTMVDCFTFNVLMRKCCE----AGEMGKAFDLFNIMNMLGVVPDTNTQDAII  848 (1211)
Q Consensus       777 l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~  848 (1211)
                      +...+..    ..+.+.|...++.....|..   .....+...+..    ......|...+.....   ..+...+..|+
T Consensus        76 l~~~~~~~~~~~~~~~~a~~~~~~a~~~g~~---~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~L~  149 (265)
T d1ouva_          76 LGNLYYSGQGVSQNTNKALQYYSKACDLKYA---EGCASLGGIYHDGKVVTRDFKKAVEYFTKACD---LNDGDGCTILG  149 (265)
T ss_dssp             HHHHHHHTSSSCCCHHHHHHHHHHHHHTTCH---HHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHH---TTCHHHHHHHH
T ss_pred             cccccccccccchhhHHHHHHHhhhhhhhhh---hHHHhhcccccCCCcccchhHHHHHHhhhhhc---ccccchhhhhh
Confidence            3333322    35566666666666654321   222223333332    3345556666655554   23455666666


Q ss_pred             HHHHh----hcchhhHHHHHHHHHHcCCCCChhHHHHHHHHHHh----cCChhhHHHHHHHHHHcCCCCchHHHHHHHHH
Q 000951          849 MGLKR----IAAFQESHFVLRGMAEKGLTPKCTQYITLINGMCR----VGNFQGAFKLKDEMEALGISSSDVAESAMVRG  920 (1211)
Q Consensus       849 ~~~~~----~g~~~eA~~~~~~~~~~g~~p~~~~~~~l~~~~~~----~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~  920 (1211)
                      ..|..    ......+..+++...+.|   +..+...++..+..    ..++++|+.+|+++.+.|   ++.++..|+.+
T Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~a~~~g---~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g---~~~a~~~LG~~  223 (265)
T d1ouva_         150 SLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGAM  223 (265)
T ss_dssp             HHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHH
T ss_pred             hhhccCCCcccccccchhhhhcccccc---ccccccchhhhcccCcccccchhhhhhhHhhhhccc---CHHHHHHHHHH
Confidence            66554    233445555555554422   34455555555554    446666666666666554   34455566666


Q ss_pred             HHh----cCCHHHHHHHHHHHHhCCcc
Q 000951          921 LAH----CGKVEEAMLVLNRMLRMRLV  943 (1211)
Q Consensus       921 ~~~----~g~~~eA~~~~~~~~~~~~~  943 (1211)
                      |.+    ..++++|.+.|+++.+.|..
T Consensus       224 y~~G~g~~~n~~~A~~~~~kAa~~g~~  250 (265)
T d1ouva_         224 QYNGEGVTRNEKQAIENFKKGCKLGAK  250 (265)
T ss_dssp             HHTTSSSSCCSTTHHHHHHHHHHHTCH
T ss_pred             HHcCCCCccCHHHHHHHHHHHHHCcCH
Confidence            654    23566666666666665533

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.58  E-value=2.4e-08  Score=115.12  Aligned_cols=269  Identities=9%  Similarity=-0.037  Sum_probs=145.3

Q ss_pred             HHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 000951          719 MANDLLSTMRSRKLCP-SLATYNILLHGYSKKKDLLMCSMLLNTMKMEGLLPDKLTCHSLILGFCETGMLEVGFKFLKKM  797 (1211)
Q Consensus       719 ~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~  797 (1211)
                      +|.+.|+++.+  ++| ...++..++.+|...|++++|   |++++.  .+|+...-......+. ...+..+++.++..
T Consensus         4 eA~q~~~qA~~--l~p~~a~a~~~la~~~~~~~~l~ea---ye~~i~--~dp~~a~~~~~e~~Lw-~~~y~~~ie~~r~~   75 (497)
T d1ya0a1           4 QSAQYLRQAEV--LKADMTDSKLGPAEVWTSRQALQDL---YQKMLV--TDLEYALDKKVEQDLW-NHAFKNQITTLQGQ   75 (497)
T ss_dssp             HHHHHHHHHHH--HHGGGTCSSSCSSSSHHHHHHHHHH---HHHHHH--HCHHHHHHHTHHHHHH-HHHTHHHHHHHHHH
T ss_pred             HHHHHHHHHHH--cCCCCHHHHhhHHHHHHHHchHHHH---HHHHHH--cChhhHHHHhHHHHHH-HHHHHHHHHHHHHh
Confidence            45666666653  244 244555666666666767665   566655  3343211110111111 11245566777776


Q ss_pred             HHcCCCCCHhh--HHHHHHHHHhcCcHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhcchhhHHHHHHHHHHcCCCCC
Q 000951          798 IAEGTMVDCFT--FNVLMRKCCEAGEMGKAFDLFNIMNMLGVVPDTNTQDAIIMGLKRIAAFQESHFVLRGMAEKGLTPK  875 (1211)
Q Consensus       798 ~~~~~~~~~~~--~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~g~~p~  875 (1211)
                      .+....++..-  ...+...+...+.++.|+..+++..... .++...+..++..+.+.|+.++|...+++.++  ..| 
T Consensus        76 ~k~~~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~~l~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~--~~~-  151 (497)
T d1ya0a1          76 AKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVD-LPCRVKSSQLGIISNKQTHTSAIVKPQSSSCS--YIC-  151 (497)
T ss_dssp             HSCSSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC--------------------------------CCHHHH--HHH-
T ss_pred             cccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-hhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhC--CCH-
Confidence            65433333221  1122223444566777777666554422 23466788888899999999999998888776  322 


Q ss_pred             hhHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCcccCHHHHHHHHHH
Q 000951          876 CTQYITLINGMCRVGNFQGAFKLKDEMEALGISSSDVAESAMVRGLAHCGKVEEAMLVLNRMLRMRLVPTIATFTTLIHK  955 (1211)
Q Consensus       876 ~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~p~~~~~~~L~~~  955 (1211)
                      ..++..++.++...|++++|...|+++.+. .|.+...|+.+|.++...|+..+|+..|.+++...++ .+.++.+|+..
T Consensus       152 ~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l-~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~~~-~~~a~~nL~~~  229 (497)
T d1ya0a1         152 QHCLVHLGDIARYRNQTSQAESYYRHAAQL-VPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFP-FPAASTNLQKA  229 (497)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBC-CHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC-CHHHHHHHHHH
Confidence            367888999999999999999999999987 3677789999999999999999999999999998754 88899999888


Q ss_pred             hhhhCCHHHHHHHHHHHHhcCCCCchH-HHHHHHHHHHhCCChhHHHHHHHHH
Q 000951          956 FCKEAKFVDALKLKGTMELSGVKLDVV-SYNVLISGLCANGDVMPAFELYEEM 1007 (1211)
Q Consensus       956 ~~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~ 1007 (1211)
                      +.+..+..++...      ....++.. .+..+...+.....++...++.+++
T Consensus       230 ~~~~~~~~~~~~~------~~~~~~~~~~f~~~~~~l~~~~~~~~~~~~~~~~  276 (497)
T d1ya0a1         230 LSKALESRDEVKT------KWGVSDFIKAFIKFHGHVYLSKSLEKLSPLREKL  276 (497)
T ss_dssp             HHHHTTSCCCCCS------SCCHHHHHHHHHHHHHHHHHTCCGGGHHHHHHHH
T ss_pred             HHHhhhhhhhhcc------ccccchHHHHHHHHHHHHHhCCchhhHHHHHHHH
Confidence            7765443322110      00011222 2344445555666676665555433

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.54  E-value=4.5e-08  Score=112.77  Aligned_cols=226  Identities=8%  Similarity=-0.047  Sum_probs=135.7

Q ss_pred             HHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHh-hHHHHHHHHHhcCcHHHHHHHHH
Q 000951          753 LMCSMLLNTMKMEGLLPDKL-TCHSLILGFCETGMLEVGFKFLKKMIAEGTMVDCF-TFNVLMRKCCEAGEMGKAFDLFN  830 (1211)
Q Consensus       753 ~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~  830 (1211)
                      -+|.+.|+++.+  ++|+.. ++..+..++...|++++|   |++++..  .|+.. ..+.. ..+. ...+..+++.++
T Consensus         3 ~eA~q~~~qA~~--l~p~~a~a~~~la~~~~~~~~l~ea---ye~~i~~--dp~~a~~~~~e-~~Lw-~~~y~~~ie~~r   73 (497)
T d1ya0a1           3 LQSAQYLRQAEV--LKADMTDSKLGPAEVWTSRQALQDL---YQKMLVT--DLEYALDKKVE-QDLW-NHAFKNQITTLQ   73 (497)
T ss_dssp             HHHHHHHHHHHH--HHGGGTCSSSCSSSSHHHHHHHHHH---HHHHHHH--CHHHHHHHTHH-HHHH-HHHTHHHHHHHH
T ss_pred             HHHHHHHHHHHH--cCCCCHHHHhhHHHHHHHHchHHHH---HHHHHHc--ChhhHHHHhHH-HHHH-HHHHHHHHHHHH
Confidence            378899999988  667543 555677788888888776   7787763  33321 11111 1111 123567788888


Q ss_pred             HHHHCCCCCChhhHH--HHHHHHHhhcchhhHHHHHHHHHHcCCCCCh-hHHHHHHHHHHhcCChhhHHHHHHHHHHcCC
Q 000951          831 IMNMLGVVPDTNTQD--AIIMGLKRIAAFQESHFVLRGMAEKGLTPKC-TQYITLINGMCRVGNFQGAFKLKDEMEALGI  907 (1211)
Q Consensus       831 ~~~~~~~~~~~~~~~--~l~~~~~~~g~~~eA~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~  907 (1211)
                      ...+....++.....  .+...+...+.++.|+..+.+..+  ++|+. ..+..++..+.+.|+.++|...++++.... 
T Consensus        74 ~~~k~~~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~~--l~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-  150 (497)
T d1ya0a1          74 GQAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFN--VDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYI-  150 (497)
T ss_dssp             HHHSCSSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC---------------------------------CCHHHHHH-
T ss_pred             HhcccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--CChhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCC-
Confidence            777543333322221  122233445667777777766665  67754 778899999999999999999999887532 


Q ss_pred             CCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCcccCHHHHHHHHHHhhhhCCHHHHHHHHHHHHhcCCCCch-HHHHH
Q 000951          908 SSSDVAESAMVRGLAHCGKVEEAMLVLNRMLRMRLVPTIATFTTLIHKFCKEAKFVDALKLKGTMELSGVKLDV-VSYNV  986 (1211)
Q Consensus       908 ~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~p~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~  986 (1211)
                        ....+..+|+++...|++++|+..|+++++..|. +...|+.||.++...|+..+|+..|......  .|+. .++.+
T Consensus       151 --~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~-~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~--~~~~~~a~~n  225 (497)
T d1ya0a1         151 --CQHCLVHLGDIARYRNQTSQAESYYRHAAQLVPS-NGQPYNQLAILASSKGDHLTTIFYYCRSIAV--KFPFPAASTN  225 (497)
T ss_dssp             --HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-BSHHHHHHHHHHHHTTCHHHHHHHHHHHHSS--SBCCHHHHHH
T ss_pred             --HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCCCHHHHHH
Confidence              1346788999999999999999999999999876 8899999999999999999999998765544  5554 48889


Q ss_pred             HHHHHHhCC
Q 000951          987 LISGLCANG  995 (1211)
Q Consensus       987 l~~~~~~~g  995 (1211)
                      |+..+.+..
T Consensus       226 L~~~~~~~~  234 (497)
T d1ya0a1         226 LQKALSKAL  234 (497)
T ss_dssp             HHHHHHHHT
T ss_pred             HHHHHHHhh
Confidence            988776543

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.53  E-value=2.6e-07  Score=92.09  Aligned_cols=99  Identities=14%  Similarity=-0.066  Sum_probs=89.8

Q ss_pred             CCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCcccCHHHHHHHHHHhhhhCCHHHHHHHHHHHHhcCCCCchH-HHHH
Q 000951          908 SSSDVAESAMVRGLAHCGKVEEAMLVLNRMLRMRLVPTIATFTTLIHKFCKEAKFVDALKLKGTMELSGVKLDVV-SYNV  986 (1211)
Q Consensus       908 ~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~p~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~  986 (1211)
                      +|+...+...|..+.+.|++++|+..|+++++.+|. ++.+|..+|.+|.+.|++++|+..|+...  .+.|+.. +|..
T Consensus         1 ~~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~-~~~~~~~lg~~y~~~~~~~~Ai~~~~~al--~l~p~~~~a~~~   77 (201)
T d2c2la1           1 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRAL--ELDGQSVKAHFF   77 (201)
T ss_dssp             CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHT--TSCTTCHHHHHH
T ss_pred             ChhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHhHHHHHhhhhhhhhhhHHHHHHH--HhCCCcHHHHHH
Confidence            467777888899999999999999999999999876 99999999999999999999999988665  4489655 8999


Q ss_pred             HHHHHHhCCChhHHHHHHHHHHH
Q 000951          987 LISGLCANGDVMPAFELYEEMKH 1009 (1211)
Q Consensus       987 l~~~~~~~g~~~~a~~~~~~~~~ 1009 (1211)
                      ++.+|...|++++|+..+++..+
T Consensus        78 lg~~~~~l~~~~~A~~~~~~al~  100 (201)
T d2c2la1          78 LGQCQLEMESYDEAIANLQRAYS  100 (201)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHH
Confidence            99999999999999999998865

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=98.46  E-value=4.9e-07  Score=79.56  Aligned_cols=91  Identities=16%  Similarity=0.020  Sum_probs=58.5

Q ss_pred             HHHHHHHHHhcCChhhHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCcccCHHHHHHHHHHhhh
Q 000951          879 YITLINGMCRVGNFQGAFKLKDEMEALGISSSDVAESAMVRGLAHCGKVEEAMLVLNRMLRMRLVPTIATFTTLIHKFCK  958 (1211)
Q Consensus       879 ~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~p~~~~~~~L~~~~~~  958 (1211)
                      ...++..+.+.|++++|+..|+++++.. |.+..+|..++.++.+.|++++|+..|+++++.+|. +..+|..|+.+|..
T Consensus        19 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~la~~y~~   96 (112)
T d1hxia_          19 PMEEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAVSHTN   96 (112)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhHHHHHHHhhhcccc-cccchhhhhhhhhhhhhhhHHHhhcccccccccccc-cccchHHHHHHHHH
Confidence            3445556666666666666666666552 445666666666666666666666666666666654 66666666666666


Q ss_pred             hCCHHHHHHHHHH
Q 000951          959 EAKFVDALKLKGT  971 (1211)
Q Consensus       959 ~g~~~~A~~~~~~  971 (1211)
                      .|++++|++.+++
T Consensus        97 ~g~~~~A~~~l~~  109 (112)
T d1hxia_          97 EHNANAALASLRA  109 (112)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHH
Confidence            6677666666554

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.46  E-value=1.2e-06  Score=83.94  Aligned_cols=61  Identities=8%  Similarity=-0.122  Sum_probs=31.5

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhCCcccCHHHHHHHHHHhhhhCCHHHHHHHHHHHHhc
Q 000951          914 ESAMVRGLAHCGKVEEAMLVLNRMLRMRLVPTIATFTTLIHKFCKEAKFVDALKLKGTMELS  975 (1211)
Q Consensus       914 ~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~p~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~  975 (1211)
                      +..++.+|.+.|++++|+..++++++.+|. ++.+|..+|.+|...|++++|+..|+.....
T Consensus        65 ~~nla~~y~k~~~~~~A~~~~~~al~~~p~-~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l  125 (170)
T d1p5qa1          65 HLNLAMCHLKLQAFSAAIESCNKALELDSN-NEKGLSRRGEAHLAVNDFELARADFQKVLQL  125 (170)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhhhcccccchhhhhhhcccc-chhhhHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence            344455555555555555555555555443 5555555555555555555555555544433

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=98.41  E-value=4.8e-07  Score=79.61  Aligned_cols=92  Identities=9%  Similarity=-0.045  Sum_probs=82.7

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhCCcccCHHHHHHHHHHhhhhCCHHHHHHHHHHHHhcCCCCch-HHHHHHHHHHH
Q 000951          914 ESAMVRGLAHCGKVEEAMLVLNRMLRMRLVPTIATFTTLIHKFCKEAKFVDALKLKGTMELSGVKLDV-VSYNVLISGLC  992 (1211)
Q Consensus       914 ~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~p~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~  992 (1211)
                      +..++..+.+.|++++|+..|+++++.+|. ++.+|..+|.++.+.|++++|+..|+.....  .|+. .+|..++.+|.
T Consensus        19 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~a~~~la~~y~   95 (112)
T d1hxia_          19 PMEEGLSMLKLANLAEAALAFEAVCQKEPE-REEAWRSLGLTQAENEKDGLAIIALNHARML--DPKDIAVHAALAVSHT   95 (112)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhHHHHHHHhhhcccccc-cchhhhhhhhhhhhhhhHHHhhccccccccc--ccccccchHHHHHHHH
Confidence            456788999999999999999999998876 8999999999999999999999999877766  8864 58999999999


Q ss_pred             hCCChhHHHHHHHHHH
Q 000951          993 ANGDVMPAFELYEEMK 1008 (1211)
Q Consensus       993 ~~g~~~~a~~~~~~~~ 1008 (1211)
                      ..|++++|.+.+++.+
T Consensus        96 ~~g~~~~A~~~l~~~l  111 (112)
T d1hxia_          96 NEHNANAALASLRAWL  111 (112)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HCCCHHHHHHHHHHHh
Confidence            9999999999998763

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.40  E-value=5.1e-07  Score=80.39  Aligned_cols=93  Identities=10%  Similarity=0.051  Sum_probs=40.6

Q ss_pred             HHHHHHhhcchhhHHHHHHHHHHcCCCCC-hhHHHHHHHHHHhcCC---hhhHHHHHHHHHHcCCCCc-hHHHHHHHHHH
Q 000951          847 IIMGLKRIAAFQESHFVLRGMAEKGLTPK-CTQYITLINGMCRVGN---FQGAFKLKDEMEALGISSS-DVAESAMVRGL  921 (1211)
Q Consensus       847 l~~~~~~~g~~~eA~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~---~~eA~~~~~~~~~~~~~~~-~~~~~~l~~~~  921 (1211)
                      +++.+...+++++|++.|++++.  .+|+ ..++..++.++.+.++   +++|+.+|+++++.+..|+ ..++..++.+|
T Consensus         5 l~n~~~~~~~l~~Ae~~Y~~aL~--~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y   82 (122)
T d1nzna_           5 VLNELVSVEDLLKFEKKFQSEKA--AGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGN   82 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHH--HSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHH
T ss_pred             HHHHhcCHHHHHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHH
Confidence            34444444455555555555554  4443 2444444444443222   2234444444443221111 12344444444


Q ss_pred             HhcCCHHHHHHHHHHHHhCC
Q 000951          922 AHCGKVEEAMLVLNRMLRMR  941 (1211)
Q Consensus       922 ~~~g~~~eA~~~~~~~~~~~  941 (1211)
                      .+.|++++|++.|+++++.+
T Consensus        83 ~~~g~~~~A~~~~~~aL~~~  102 (122)
T d1nzna_          83 YRLKEYEKALKYVRGLLQTE  102 (122)
T ss_dssp             HHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHhhhHHHHHHHHHHHHhC
Confidence            44555555555555554444

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.39  E-value=1e-06  Score=78.33  Aligned_cols=100  Identities=14%  Similarity=0.072  Sum_probs=69.4

Q ss_pred             HHHHHHHHhcCChhhHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCC---HHHHHHHHHHHHhCCcccC-HHHHHHHHHH
Q 000951          880 ITLINGMCRVGNFQGAFKLKDEMEALGISSSDVAESAMVRGLAHCGK---VEEAMLVLNRMLRMRLVPT-IATFTTLIHK  955 (1211)
Q Consensus       880 ~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~eA~~~~~~~~~~~~~p~-~~~~~~L~~~  955 (1211)
                      ..+++.+...+++++|.+.|++++..+ |.+..++..++.++.+.++   +++|+.+|+++++.++.|+ ..+|..||.+
T Consensus         3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~-p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~   81 (122)
T d1nzna_           3 EAVLNELVSVEDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVG   81 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHhcCHHHHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHH
Confidence            346666777777778888888777763 5666777777777766444   4467777777777665543 3467777777


Q ss_pred             hhhhCCHHHHHHHHHHHHhcCCCCchH
Q 000951          956 FCKEAKFVDALKLKGTMELSGVKLDVV  982 (1211)
Q Consensus       956 ~~~~g~~~~A~~~~~~~~~~~~~p~~~  982 (1211)
                      |.+.|++++|+..|+.....  +|+..
T Consensus        82 y~~~g~~~~A~~~~~~aL~~--~P~~~  106 (122)
T d1nzna_          82 NYRLKEYEKALKYVRGLLQT--EPQNN  106 (122)
T ss_dssp             HHHTTCHHHHHHHHHHHHHH--CTTCH
T ss_pred             HHHHhhhHHHHHHHHHHHHh--CcCCH
Confidence            77777777777777766655  67654

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.38  E-value=2e-06  Score=82.24  Aligned_cols=119  Identities=10%  Similarity=0.010  Sum_probs=78.9

Q ss_pred             hhHHHHHHHHHhhcchhhHHHHHHHHHHcCCCCC----------------hhHHHHHHHHHHhcCChhhHHHHHHHHHHc
Q 000951          842 NTQDAIIMGLKRIAAFQESHFVLRGMAEKGLTPK----------------CTQYITLINGMCRVGNFQGAFKLKDEMEAL  905 (1211)
Q Consensus       842 ~~~~~l~~~~~~~g~~~eA~~~~~~~~~~g~~p~----------------~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~  905 (1211)
                      ..+...+..+.+.|++++|+..|.++++  +.|.                ..+|..++.+|.+.|++++|+..++++++.
T Consensus        14 ~~l~~~G~~~~~~~~~~~Ai~~y~~al~--~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~al~~   91 (170)
T d1p5qa1          14 TIVKERGTVYFKEGKYKQALLQYKKIVS--WLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL   91 (170)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHH--HTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHH--HhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccccchhhhhhhc
Confidence            4455667777777777777777777776  2221                133555677777777777777777777766


Q ss_pred             CCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCcccCHHHHHHHHHHhhhhCCHHH
Q 000951          906 GISSSDVAESAMVRGLAHCGKVEEAMLVLNRMLRMRLVPTIATFTTLIHKFCKEAKFVD  964 (1211)
Q Consensus       906 ~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~p~~~~~~~L~~~~~~~g~~~~  964 (1211)
                      + |.+..++..++.+|...|++++|+..|+++++.+|. |..+...+..+..+.+...+
T Consensus        92 ~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~-n~~~~~~l~~~~~~~~~~~~  148 (170)
T d1p5qa1          92 D-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPN-NKAAKTQLAVCQQRIRRQLA  148 (170)
T ss_dssp             C-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHHHHHHH
T ss_pred             c-ccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHH
Confidence            3 556667777777777777777777777777776655 66666666665554444433

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=98.38  E-value=1.7e-06  Score=81.10  Aligned_cols=62  Identities=6%  Similarity=-0.086  Sum_probs=33.7

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhCCcccCHHHHHHHHHHhhhhCCHHHHHHHHHHHHhc
Q 000951          913 AESAMVRGLAHCGKVEEAMLVLNRMLRMRLVPTIATFTTLIHKFCKEAKFVDALKLKGTMELS  975 (1211)
Q Consensus       913 ~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~p~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~  975 (1211)
                      .+..++.+|.+.|++++|++.++++++.+|. +..+|..+|.++...|++++|+..|+.....
T Consensus        69 ~~~Nla~~~~~l~~~~~Al~~~~~al~~~p~-~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l  130 (153)
T d2fbna1          69 CNLNLATCYNKNKDYPKAIDHASKVLKIDKN-NVKALYKLGVANMYFGFLEEAKENLYKAASL  130 (153)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHhhHHHHHHHhcccchhhhhhhccccccch-hhhhhHHhHHHHHHcCCHHHHHHHHHHHHHh
Confidence            3444555555555555555555555555443 5555555555555555555555555544443

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.30  E-value=2.5e-06  Score=76.99  Aligned_cols=58  Identities=14%  Similarity=0.130  Sum_probs=25.4

Q ss_pred             HHHHHHHhcCChhhHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 000951          881 TLINGMCRVGNFQGAFKLKDEMEALGISSSDVAESAMVRGLAHCGKVEEAMLVLNRMLR  939 (1211)
Q Consensus       881 ~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~  939 (1211)
                      .+++.+...|++++|+..|.++++.+ |.+..++..++.+|.+.|++++|++.++++++
T Consensus         9 ~~G~~~~~~~~y~~Ai~~y~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~   66 (128)
T d1elra_           9 ELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIE   66 (128)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHhHHHHHHHcCchHHHHHHHHHHHH
Confidence            34444444444444444444444432 33334444444444444444444444444444

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.26  E-value=2.8e-06  Score=81.28  Aligned_cols=77  Identities=14%  Similarity=0.085  Sum_probs=36.0

Q ss_pred             HHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCcccCHHHHHHHHHHh
Q 000951          878 QYITLINGMCRVGNFQGAFKLKDEMEALGISSSDVAESAMVRGLAHCGKVEEAMLVLNRMLRMRLVPTIATFTTLIHKF  956 (1211)
Q Consensus       878 ~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~p~~~~~~~L~~~~  956 (1211)
                      .+..++.++.+.|++++|+..++++++.. |.+..+|..++.+|...|++++|+..|+++++.+|. +..+...|..+.
T Consensus        79 ~~~nla~~~~~~~~~~~Ai~~~~~al~~~-p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~-n~~~~~~l~~~~  155 (169)
T d1ihga1          79 CVLNIGACKLKMSDWQGAVDSCLEALEID-PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPE-DKAIQAELLKVK  155 (169)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhcccchhhhhhhhhhhhh-hhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHH
Confidence            34444444445555555555555554432 334444444555555555555555555555544433 444444444333

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=98.24  E-value=9.1e-06  Score=75.93  Aligned_cols=112  Identities=9%  Similarity=-0.043  Sum_probs=68.5

Q ss_pred             hhHHHHHHHHHhhcchhhHHHHHHHHHHcCC-CC---Ch-----------hHHHHHHHHHHhcCChhhHHHHHHHHHHcC
Q 000951          842 NTQDAIIMGLKRIAAFQESHFVLRGMAEKGL-TP---KC-----------TQYITLINGMCRVGNFQGAFKLKDEMEALG  906 (1211)
Q Consensus       842 ~~~~~l~~~~~~~g~~~eA~~~~~~~~~~g~-~p---~~-----------~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~  906 (1211)
                      ..+...+..+.+.|++.+|+..|.++++.-. .+   +.           .+|..++.+|.+.|++++|++.++++++.+
T Consensus        18 ~~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Al~~~~~al~~~   97 (153)
T d2fbna1          18 FDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKID   97 (153)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHHHhhhhHHHHHHhhHHHHHHHhcccchhhhhhhcccccc
Confidence            4555666667777777777777777765111 00   10           234556666666777777777777766653


Q ss_pred             CCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCcccCHHHHHHHHHH
Q 000951          907 ISSSDVAESAMVRGLAHCGKVEEAMLVLNRMLRMRLVPTIATFTTLIHK  955 (1211)
Q Consensus       907 ~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~p~~~~~~~L~~~  955 (1211)
                       |.+..+|..++.++...|++++|+..|+++++.+|. |..+...+..+
T Consensus        98 -p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~-n~~~~~~l~~~  144 (153)
T d2fbna1          98 -KNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPN-NLDIRNSYELC  144 (153)
T ss_dssp             -TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHH
T ss_pred             -chhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHH
Confidence             555666666777777777777777777777666654 55555554443

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=98.23  E-value=7.2e-06  Score=78.13  Aligned_cols=61  Identities=7%  Similarity=-0.148  Sum_probs=32.8

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhCCcccCHHHHHHHHHHhhhhCCHHHHHHHHHHHHhc
Q 000951          914 ESAMVRGLAHCGKVEEAMLVLNRMLRMRLVPTIATFTTLIHKFCKEAKFVDALKLKGTMELS  975 (1211)
Q Consensus       914 ~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~p~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~  975 (1211)
                      +..++.+|.+.|++++|+..++++++.+|. +..+|..++.+|...|++++|+..|+.....
T Consensus        67 ~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~-~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l  127 (168)
T d1kt1a1          67 FLNLAMCYLKLREYTKAVECCDKALGLDSA-NEKGLYRRGEAQLLMNEFESAKGDFEKVLEV  127 (168)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS
T ss_pred             HHhHHHHHHHhhhcccchhhhhhhhhcccc-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            344555555555555555555555555443 5555555555555555555555555544433

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.22  E-value=4.5e-06  Score=75.27  Aligned_cols=99  Identities=7%  Similarity=0.048  Sum_probs=83.8

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhCCcccCHHHHHHHHHHhhhhCCHHHHHHHHHHHHhcCCCCch--------HHH
Q 000951          913 AESAMVRGLAHCGKVEEAMLVLNRMLRMRLVPTIATFTTLIHKFCKEAKFVDALKLKGTMELSGVKLDV--------VSY  984 (1211)
Q Consensus       913 ~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~p~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~p~~--------~~~  984 (1211)
                      .+..+|..+.+.|++++|+..|+++++.+|. ++.+|..++.+|.+.|++++|+..++.....  .|+.        .+|
T Consensus         6 ~~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l--~~~~~~~~~~~a~~~   82 (128)
T d1elra_           6 KEKELGNDAYKKKDFDTALKHYDKAKELDPT-NMTYITNQAAVYFEKGDYNKCRELCEKAIEV--GRENREDYRQIAKAY   82 (128)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--HHHSTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHhHHHHHHHcCchHHHHHHHHHHHHh--CcccHHHHHHHHHHH
Confidence            3456899999999999999999999999876 8999999999999999999999998876654  5532        256


Q ss_pred             HHHHHHHHhCCChhHHHHHHHHHHHcCCccCh
Q 000951          985 NVLISGLCANGDVMPAFELYEEMKHKGLCPNS 1016 (1211)
Q Consensus       985 ~~l~~~~~~~g~~~~a~~~~~~~~~~g~~p~~ 1016 (1211)
                      ..++..+...+++++|++.+++...  ..|++
T Consensus        83 ~~lg~~~~~~~~~~~A~~~~~kal~--~~~~~  112 (128)
T d1elra_          83 ARIGNSYFKEEKYKDAIHFYNKSLA--EHRTP  112 (128)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHH--HCCCH
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHh--cCCCH
Confidence            7788899999999999999998765  34444

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.19  E-value=4.5e-06  Score=79.85  Aligned_cols=78  Identities=6%  Similarity=-0.144  Sum_probs=61.1

Q ss_pred             hHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCcccCHHHHHHHHHHhhhhCCHHHHHHHHHHHHhcCCCCchH-HHHHHHH
Q 000951          911 DVAESAMVRGLAHCGKVEEAMLVLNRMLRMRLVPTIATFTTLIHKFCKEAKFVDALKLKGTMELSGVKLDVV-SYNVLIS  989 (1211)
Q Consensus       911 ~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~p~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~  989 (1211)
                      ...+..++.++.+.|++++|+..++++++.+|. ++.+|..+|.+|...|++++|+..|+.....  .|+.. ....+..
T Consensus        77 ~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~-~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l--~p~n~~~~~~l~~  153 (169)
T d1ihga1          77 LSCVLNIGACKLKMSDWQGAVDSCLEALEIDPS-NTKALYRRAQGWQGLKEYDQALADLKKAQEI--APEDKAIQAELLK  153 (169)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhcccchhhhhhhhhhhhhhh-hhhHHHhHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHH
Confidence            445677888888889999999999999888766 8888888999999999999998888877765  77554 4555544


Q ss_pred             HH
Q 000951          990 GL  991 (1211)
Q Consensus       990 ~~  991 (1211)
                      ++
T Consensus       154 ~~  155 (169)
T d1ihga1         154 VK  155 (169)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=98.19  E-value=9.6e-06  Score=77.23  Aligned_cols=118  Identities=8%  Similarity=-0.011  Sum_probs=63.1

Q ss_pred             hhHHHHHHHHHhhcchhhHHHHHHHHHHc-CCCC--Ch-----------hHHHHHHHHHHhcCChhhHHHHHHHHHHcCC
Q 000951          842 NTQDAIIMGLKRIAAFQESHFVLRGMAEK-GLTP--KC-----------TQYITLINGMCRVGNFQGAFKLKDEMEALGI  907 (1211)
Q Consensus       842 ~~~~~l~~~~~~~g~~~eA~~~~~~~~~~-g~~p--~~-----------~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~  907 (1211)
                      ..+...+..+.+.|++.+|+..|++++.. ...+  +.           ..|..++.+|.+.|++++|+..++++++.. 
T Consensus        16 ~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~-   94 (168)
T d1kt1a1          16 AIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD-   94 (168)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhhhcccchhhhhhhhhcc-
Confidence            34455555666666666666666665541 1111  00           223445555566666666666666665542 


Q ss_pred             CCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCcccCHHHHHHHHHHhhhhCC
Q 000951          908 SSSDVAESAMVRGLAHCGKVEEAMLVLNRMLRMRLVPTIATFTTLIHKFCKEAK  961 (1211)
Q Consensus       908 ~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~p~~~~~~~L~~~~~~~g~  961 (1211)
                      |.+..++..++.++...|++++|+..|+++++.+|. +..++..+..+....+.
T Consensus        95 p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~-n~~~~~~l~~~~~~~~~  147 (168)
T d1kt1a1          95 SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQ-NKAARLQIFMCQKKAKE  147 (168)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT-CHHHHHHHHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHh
Confidence            445555556666666666666666666666665544 55555555554444433

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.16  E-value=2.1e-06  Score=79.32  Aligned_cols=28  Identities=7%  Similarity=0.008  Sum_probs=14.8

Q ss_pred             HHHHHHHHHHHHhCCcccCHHHHHHHHHH
Q 000951          927 VEEAMLVLNRMLRMRLVPTIATFTTLIHK  955 (1211)
Q Consensus       927 ~~eA~~~~~~~~~~~~~p~~~~~~~L~~~  955 (1211)
                      +++|.+.|+++++.+|. +...+..|+..
T Consensus       102 ~~~A~~~~~kal~l~P~-~~~~~~~L~~~  129 (145)
T d1zu2a1         102 FDLATQFFQQAVDEQPD-NTHYLKSLEMT  129 (145)
T ss_dssp             HHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred             HHHhhhhhhcccccCCC-HHHHHHHHHHH
Confidence            45566666666665543 44444444443

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.14  E-value=4.5e-06  Score=77.05  Aligned_cols=126  Identities=14%  Similarity=0.057  Sum_probs=85.6

Q ss_pred             HHhhcchhhHHHHHHHHHHcCCCCCh-hHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHH
Q 000951          851 LKRIAAFQESHFVLRGMAEKGLTPKC-TQYITLINGMCRVGNFQGAFKLKDEMEALGISSSDVAESAMVRGLAHCGKVEE  929 (1211)
Q Consensus       851 ~~~~g~~~eA~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~e  929 (1211)
                      |.+.+.+++|+..|+++++  ++|+. .++..++.++...+++..+.+.                         .+.+++
T Consensus         7 ~~r~~~fe~A~~~~e~al~--~~P~~~~~~~~~g~~l~~~~~~~~~~e~-------------------------~~~~~~   59 (145)
T d1zu2a1           7 FDRILLFEQIRQDAENTYK--SNPLDADNLTRWGGVLLELSQFHSISDA-------------------------KQMIQE   59 (145)
T ss_dssp             HHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHSCHHHH-------------------------HHHHHH
T ss_pred             HHHHccHHHHHHHHHHHHh--hCCcchHHHHHHHHHHHHhhhhhhhhHH-------------------------HHHHHH
Confidence            5566777777777777777  66753 6677777766665554444332                         234678


Q ss_pred             HHHHHHHHHhCCcccCHHHHHHHHHHhhhhCC-----------HHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhCCChh
Q 000951          930 AMLVLNRMLRMRLVPTIATFTTLIHKFCKEAK-----------FVDALKLKGTMELSGVKLDVVSYNVLISGLCANGDVM  998 (1211)
Q Consensus       930 A~~~~~~~~~~~~~p~~~~~~~L~~~~~~~g~-----------~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~  998 (1211)
                      |+..|+++++.+|. +..+|..+|.+|...|+           +++|.+.|+.....  +|+...+...+..+      .
T Consensus        60 Ai~~~~kAl~l~P~-~~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l--~P~~~~~~~~L~~~------~  130 (145)
T d1zu2a1          60 AITKFEEALLIDPK-KDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDE--QPDNTHYLKSLEMT------A  130 (145)
T ss_dssp             HHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHH------H
T ss_pred             HHHHHHHHHHhcch-hhHHHhhHHHHHHHcccchhhHHHHHHhHHHhhhhhhccccc--CCCHHHHHHHHHHH------H
Confidence            99999999998876 88899999999877654           68888888876665  88777554433322      3


Q ss_pred             HHHHHHHHHHHcCC
Q 000951          999 PAFELYEEMKHKGL 1012 (1211)
Q Consensus       999 ~a~~~~~~~~~~g~ 1012 (1211)
                      .|.+++.+..++|+
T Consensus       131 ka~~~~~e~~k~~~  144 (145)
T d1zu2a1         131 KAPQLHAEAYKQGL  144 (145)
T ss_dssp             THHHHHHHHHHSSS
T ss_pred             HHHHHHHHHHHHhc
Confidence            45556655555543

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.84  E-value=0.00015  Score=69.08  Aligned_cols=126  Identities=13%  Similarity=0.068  Sum_probs=77.8

Q ss_pred             hHHHHHHHHHhhcchhhHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCchHHHHHHHHHHH
Q 000951          843 TQDAIIMGLKRIAAFQESHFVLRGMAEKGLTPKCTQYITLINGMCRVGNFQGAFKLKDEMEALGISSSDVAESAMVRGLA  922 (1211)
Q Consensus       843 ~~~~l~~~~~~~g~~~eA~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~  922 (1211)
                      .+...+......|++++|...|.+++.  +.|....-      -...+.|  +...-..+.    +....++..++..+.
T Consensus        13 ~~~~~g~~~~~~g~~e~A~~~~~~AL~--l~rG~~l~------~~~~~~w--~~~~r~~l~----~~~~~a~~~la~~~~   78 (179)
T d2ff4a2          13 AEKTAGVHAAAAGRFEQASRHLSAALR--EWRGPVLD------DLRDFQF--VEPFATALV----EDKVLAHTAKAEAEI   78 (179)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHT--TCCSSTTG------GGTTSTT--HHHHHHHHH----HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHh--hCcccccc------cCcchHH--HHHHHHHHH----HHHHHHHHHHHHHHH
Confidence            344555667778888888888888877  43322100      0000111  111111111    111345666777888


Q ss_pred             hcCCHHHHHHHHHHHHhCCcccCHHHHHHHHHHhhhhCCHHHHHHHHHHH-----HhcCCCCchHH
Q 000951          923 HCGKVEEAMLVLNRMLRMRLVPTIATFTTLIHKFCKEAKFVDALKLKGTM-----ELSGVKLDVVS  983 (1211)
Q Consensus       923 ~~g~~~eA~~~~~~~~~~~~~p~~~~~~~L~~~~~~~g~~~~A~~~~~~~-----~~~~~~p~~~~  983 (1211)
                      ..|++++|+..++++++.+|. +...|..++.+|...|++++|+..|+..     .++|++|...+
T Consensus        79 ~~g~~~~Al~~~~~al~~~P~-~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l  143 (179)
T d2ff4a2          79 ACGRASAVIAELEALTFEHPY-REPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL  143 (179)
T ss_dssp             HTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred             HCCCchHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHH
Confidence            888888888888888887765 7788888888888888888888877765     34677776543

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.64  E-value=0.00038  Score=66.09  Aligned_cols=125  Identities=8%  Similarity=-0.007  Sum_probs=85.9

Q ss_pred             hHHHHHHHHHhcCcHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhcchhhHHHHHHHHHHcCCCCC-hhHHHHHHHHH
Q 000951          808 TFNVLMRKCCEAGEMGKAFDLFNIMNMLGVVPDTNTQDAIIMGLKRIAAFQESHFVLRGMAEKGLTPK-CTQYITLINGM  886 (1211)
Q Consensus       808 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~g~~p~-~~~~~~l~~~~  886 (1211)
                      .....+......|++++|.+.|.+++...  +....        .......-+...-..     +.+. ...+..++.++
T Consensus        13 ~~~~~g~~~~~~g~~e~A~~~~~~AL~l~--rG~~l--------~~~~~~~w~~~~r~~-----l~~~~~~a~~~la~~~   77 (179)
T d2ff4a2          13 AEKTAGVHAAAAGRFEQASRHLSAALREW--RGPVL--------DDLRDFQFVEPFATA-----LVEDKVLAHTAKAEAE   77 (179)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHTTC--CSSTT--------GGGTTSTTHHHHHHH-----HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHhhC--ccccc--------ccCcchHHHHHHHHH-----HHHHHHHHHHHHHHHH
Confidence            44455678889999999999999998732  22110        000000001111111     1111 24577888899


Q ss_pred             HhcCChhhHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----CCcccCHHH
Q 000951          887 CRVGNFQGAFKLKDEMEALGISSSDVAESAMVRGLAHCGKVEEAMLVLNRMLR-----MRLVPTIAT  948 (1211)
Q Consensus       887 ~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~-----~~~~p~~~~  948 (1211)
                      ...|++++|+..++++++.. +.+...|..++.+|.+.|++++|++.|+++.+     .|+.|.+.+
T Consensus        78 ~~~g~~~~Al~~~~~al~~~-P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l  143 (179)
T d2ff4a2          78 IACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL  143 (179)
T ss_dssp             HHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred             HHCCCchHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHH
Confidence            99999999999999998873 67788899999999999999999999998743     577777654

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=97.63  E-value=3.5e-05  Score=78.70  Aligned_cols=125  Identities=16%  Similarity=0.041  Sum_probs=94.0

Q ss_pred             HhcCChhhHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCcccCHHHHHHHHHHhhhhCCHHHHH
Q 000951          887 CRVGNFQGAFKLKDEMEALGISSSDVAESAMVRGLAHCGKVEEAMLVLNRMLRMRLVPTIATFTTLIHKFCKEAKFVDAL  966 (1211)
Q Consensus       887 ~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~p~~~~~~~L~~~~~~~g~~~~A~  966 (1211)
                      ...|++++|+..++++++. .|.+...+..++.+|+..|++++|++.|+++++.+|. +..++..++.++...+..+++.
T Consensus         7 L~~G~l~eAl~~l~~al~~-~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~-~~~~~~~l~~ll~a~~~~~~a~   84 (264)
T d1zbpa1           7 LSEGQLQQALELLIEAIKA-SPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPE-YLPGASQLRHLVKAAQARKDFA   84 (264)
T ss_dssp             TTTTCHHHHHHHHHHHHHT-CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGG-GHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHhccccHHHH
Confidence            4578888888888888876 3777888888999999999999999999999988766 7788888888888888777776


Q ss_pred             HHHHHHHhcCCCCchH-HHHHHHHHHHhCCChhHHHHHHHHHHHcCCccCh
Q 000951          967 KLKGTMELSGVKLDVV-SYNVLISGLCANGDVMPAFELYEEMKHKGLCPNS 1016 (1211)
Q Consensus       967 ~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~p~~ 1016 (1211)
                      ..+...... ..|+.. .+...+..+...|++++|.+.++...+  ..|+.
T Consensus        85 ~~~~~~~~~-~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e--~~p~~  132 (264)
T d1zbpa1          85 QGAATAKVL-GENEELTKSLVSFNLSMVSQDYEQVSELALQIEE--LRQEK  132 (264)
T ss_dssp             TSCCCEECC-CSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCCCC
T ss_pred             HHhhhhhcc-cCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHh--cCCCC
Confidence            542221111 134333 445566688889999999999998866  34444

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=97.63  E-value=0.00018  Score=67.05  Aligned_cols=89  Identities=16%  Similarity=0.147  Sum_probs=44.5

Q ss_pred             HHHhhcchhhHHHHHHHHHHcCCCC---C----------hhHHHHHHHHHHhcCChhhHHHHHHHHHHc-----CCCCc-
Q 000951          850 GLKRIAAFQESHFVLRGMAEKGLTP---K----------CTQYITLINGMCRVGNFQGAFKLKDEMEAL-----GISSS-  910 (1211)
Q Consensus       850 ~~~~~g~~~eA~~~~~~~~~~g~~p---~----------~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~-----~~~~~-  910 (1211)
                      .+.+.|++++|+..|+++++  +.|   +          ..+|..++.+|...|++++|...++++++.     ...++ 
T Consensus        18 ~~~~~g~y~~Ai~~y~~Al~--i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~   95 (156)
T d2hr2a1          18 RQLVAGEYDEAAANCRRAME--ISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDE   95 (156)
T ss_dssp             HHHHHTCHHHHHHHHHHHHH--HHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTH
T ss_pred             HHHHcCCHHHHHHHHHHHHH--hChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccc
Confidence            34455555555555555554  211   1          134555666666666666666666655432     00111 


Q ss_pred             ----hHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 000951          911 ----DVAESAMVRGLAHCGKVEEAMLVLNRMLRM  940 (1211)
Q Consensus       911 ----~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~  940 (1211)
                          ..+++.++.+|...|++++|+..|+++++.
T Consensus        96 ~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l  129 (156)
T d2hr2a1          96 GKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM  129 (156)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             cchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence                113444555555555555555555555543

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=97.62  E-value=4.1e-05  Score=78.16  Aligned_cols=120  Identities=13%  Similarity=-0.023  Sum_probs=78.0

Q ss_pred             HHhcCCHHHHHHHHHHHHhCCcccCHHHHHHHHHHhhhhCCHHHHHHHHHHHHhcCCCCchH-HHHHHHHHHHhCCChhH
Q 000951          921 LAHCGKVEEAMLVLNRMLRMRLVPTIATFTTLIHKFCKEAKFVDALKLKGTMELSGVKLDVV-SYNVLISGLCANGDVMP  999 (1211)
Q Consensus       921 ~~~~g~~~eA~~~~~~~~~~~~~p~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~  999 (1211)
                      ..+.|++++|+..|+++++..|. |...+..|+.+|+..|++++|+..++...+.  .|+.. .+..++.++...+..++
T Consensus         6 aL~~G~l~eAl~~l~~al~~~P~-d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l--~P~~~~~~~~l~~ll~a~~~~~~   82 (264)
T d1zbpa1           6 ALSEGQLQQALELLIEAIKASPK-DASLRSSFIELLCIDGDFERADEQLMQSIKL--FPEYLPGASQLRHLVKAAQARKD   82 (264)
T ss_dssp             HTTTTCHHHHHHHHHHHHHTCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CGGGHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHhccccHH
Confidence            34678888888888888888766 8888888888888888888888888877666  77655 55666666666666655


Q ss_pred             HHHHHHHHHHcCCccCh-hhHHHHHHHHHhcccchHHHHHHHHHHHH
Q 000951         1000 AFELYEEMKHKGLCPNS-TTYSVLIDAISKKENNLVKGEILLKDIQE 1045 (1211)
Q Consensus      1000 a~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~~~~~~~a~~~~~~l~~ 1045 (1211)
                      +.......... ..|+. ..+......+...|+.++ |..+++++.+
T Consensus        83 a~~~~~~~~~~-~~p~~~~~~l~~a~~~~~~gd~~~-A~~~~~~a~e  127 (264)
T d1zbpa1          83 FAQGAATAKVL-GENEELTKSLVSFNLSMVSQDYEQ-VSELALQIEE  127 (264)
T ss_dssp             HTTSCCCEECC-CSCHHHHHHHHHHHHHHHHTCHHH-HHHHHHHHHH
T ss_pred             HHHHhhhhhcc-cCchHHHHHHHHHHHHHhCCCHHH-HHHHHHHHHh
Confidence            54432221111 12322 444444555566677666 5555555433

>d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Clathrin heavy chain proximal leg segment
domain: Clathrin heavy chain proximal leg segment
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.61  E-value=0.031  Score=57.92  Aligned_cols=145  Identities=14%  Similarity=0.185  Sum_probs=85.3

Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHhHHHHH
Q 000951          277 TPNEVTYNTLINGFVKEGKIQVASRVFDEMSMLNFSPNSITYNELIDGHCCKGNFKEAFRLLAMMEEMGLRPNEVSYGAL  356 (1211)
Q Consensus       277 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l  356 (1211)
                      .||..--..+..-|.+.|.++.|..+|..+..         |..++..+.+.++++.|.+.+.+..      +..+|..+
T Consensus        11 ~~n~~d~~~i~~~c~~~~lye~A~~lY~~~~d---------~~rl~~~~v~l~~~~~avd~~~k~~------~~~~~k~~   75 (336)
T d1b89a_          11 GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSN---------FGRLASTLVHLGEYQAAVDGARKAN------STRTWKEV   75 (336)
T ss_dssp             CC----------------CTTTHHHHHHHTTC---------HHHHHHHHHTTTCHHHHHHHHHHHT------CHHHHHHH
T ss_pred             CCCcCCHHHHHHHHHHCCCHHHHHHHHHhCCC---------HHHHHHHHHhhccHHHHHHHHHHcC------CHHHHHHH
Confidence            35555555666667788888888888876543         6677777788888888877776542      45577777


Q ss_pred             HHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCH
Q 000951          357 LNGFCKHAKFDLARSLLERMRTNGISISCIAYTSVIDGLCKCGLLDEAMQLFNKMFKDGLNPDLITFSVLINGFCKVGMT  436 (1211)
Q Consensus       357 l~~~~~~g~~~~a~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~  436 (1211)
                      ...+........+     .+.......+......++..|-..|.+++...+++..... -.++...++.++..|++.+ .
T Consensus        76 ~~~l~~~~e~~la-----~i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~-~~~~~~~~~~L~~lyak~~-~  148 (336)
T d1b89a_          76 CFACVDGKEFRLA-----QMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYSKFK-P  148 (336)
T ss_dssp             HHHHHHTTCHHHH-----HHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS-TTCCHHHHHHHHHHHHTTC-H
T ss_pred             HHHHHhCcHHHHH-----HHHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcC-CccchHHHHHHHHHHHHhC-h
Confidence            7777766655443     2222333345555567788888888888888888877643 2456677888888887754 3


Q ss_pred             HHHHHHH
Q 000951          437 RKAKAVL  443 (1211)
Q Consensus       437 ~~A~~~~  443 (1211)
                      ++-.+.+
T Consensus       149 ~kl~e~l  155 (336)
T d1b89a_         149 QKMREHL  155 (336)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            3433333

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.60  E-value=0.00017  Score=60.26  Aligned_cols=75  Identities=8%  Similarity=-0.005  Sum_probs=44.9

Q ss_pred             HHHHHHHHHhcCChhhHHHHHHHHHHcC------CCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCcccCHHHHHHH
Q 000951          879 YITLINGMCRVGNFQGAFKLKDEMEALG------ISSSDVAESAMVRGLAHCGKVEEAMLVLNRMLRMRLVPTIATFTTL  952 (1211)
Q Consensus       879 ~~~l~~~~~~~g~~~eA~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~p~~~~~~~L  952 (1211)
                      +..++..+.+.|++++|+..|+++++..      ......++..++.++.+.|++++|++.|+++++.+|. ++.+++++
T Consensus         8 c~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~-~~~a~~Nl   86 (95)
T d1tjca_           8 SFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPE-HQRANGNL   86 (95)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcC-CHHHHHHH
Confidence            4455566666666666666666654321      0112345666777777777777777777777776655 66666665


Q ss_pred             HH
Q 000951          953 IH  954 (1211)
Q Consensus       953 ~~  954 (1211)
                      +.
T Consensus        87 ~~   88 (95)
T d1tjca_          87 KY   88 (95)
T ss_dssp             HH
T ss_pred             HH
Confidence            44

>d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Clathrin heavy chain proximal leg segment
domain: Clathrin heavy chain proximal leg segment
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.52  E-value=0.038  Score=57.24  Aligned_cols=127  Identities=10%  Similarity=0.069  Sum_probs=55.5

Q ss_pred             HHHHHHHcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 000951          111 LIRVYLREGMVEYALETFQLMGFRGFNPSVYTCNMMLSFMLKDRRVDSVWLLFDDMLDRKICPNVATFNILINVSCVEGK  190 (1211)
Q Consensus       111 l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~l~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~  190 (1211)
                      ++..+.+.|.++.|..+|..+.         -|..++..+.+.+++..|..++...      .+..+|..+...+.+...
T Consensus        20 i~~~c~~~~lye~A~~lY~~~~---------d~~rl~~~~v~l~~~~~avd~~~k~------~~~~~~k~~~~~l~~~~e   84 (336)
T d1b89a_          20 VGDRCYDEKMYDAAKLLYNNVS---------NFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKE   84 (336)
T ss_dssp             ---------CTTTHHHHHHHTT---------CHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHCCCHHHHHHHHHhCC---------CHHHHHHHHHhhccHHHHHHHHHHc------CCHHHHHHHHHHHHhCcH
Confidence            4444555566666666665442         2344555555666666655555432      234455555555554433


Q ss_pred             hhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 000951          191 LKKAGYLLRKMEESGYVPNIVTYNTLLNWYCKKGRYKAAFKLIDCMASKGIEADVCTYNMFIDDLCRN  258 (1211)
Q Consensus       191 ~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~  258 (1211)
                      ..-|     .+.......+......++..|-..|.+++...+++..... -.++...++.++..|++.
T Consensus        85 ~~la-----~i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~-~~~~~~~~~~L~~lyak~  146 (336)
T d1b89a_          85 FRLA-----QMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYSKF  146 (336)
T ss_dssp             HHHH-----HHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS-TTCCHHHHHHHHHHHHTT
T ss_pred             HHHH-----HHHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcC-CccchHHHHHHHHHHHHh
Confidence            3221     1111112223333344555555566666666665554322 133444455555555543

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=97.49  E-value=0.00017  Score=67.25  Aligned_cols=57  Identities=12%  Similarity=0.159  Sum_probs=31.4

Q ss_pred             HHHHHhcCChhhHHHHHHHHHHcCCC-Cc----------hHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 000951          883 INGMCRVGNFQGAFKLKDEMEALGIS-SS----------DVAESAMVRGLAHCGKVEEAMLVLNRMLR  939 (1211)
Q Consensus       883 ~~~~~~~g~~~eA~~~~~~~~~~~~~-~~----------~~~~~~l~~~~~~~g~~~eA~~~~~~~~~  939 (1211)
                      +..+...|++++|+..|+++++.... |+          ...|+.++.+|...|++++|+..++++++
T Consensus        16 g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~   83 (156)
T d2hr2a1          16 AQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALH   83 (156)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhh
Confidence            44555667777777777777643111 11          23455555666666666666665555554

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.42  E-value=0.00023  Score=59.50  Aligned_cols=77  Identities=10%  Similarity=-0.035  Sum_probs=60.2

Q ss_pred             hHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCcc-----c-CHHHHHHHHHHhhhhCCHHHHHHHHHHHHhcCCCCchH-H
Q 000951          911 DVAESAMVRGLAHCGKVEEAMLVLNRMLRMRLV-----P-TIATFTTLIHKFCKEAKFVDALKLKGTMELSGVKLDVV-S  983 (1211)
Q Consensus       911 ~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~-----p-~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-~  983 (1211)
                      ...+..+|..+.+.|++++|+..|+++++..+.     + ...++..||.++.+.|++++|+..++.....  +|+.. +
T Consensus         5 addc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l--~P~~~~a   82 (95)
T d1tjca_           5 AEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL--DPEHQRA   82 (95)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHh--CcCCHHH
Confidence            445678899999999999999999999875322     1 2567889999999999999999998877766  88655 6


Q ss_pred             HHHHHH
Q 000951          984 YNVLIS  989 (1211)
Q Consensus       984 ~~~l~~  989 (1211)
                      ++++..
T Consensus        83 ~~Nl~~   88 (95)
T d1tjca_          83 NGNLKY   88 (95)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            666543

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=96.76  E-value=0.013  Score=52.05  Aligned_cols=80  Identities=13%  Similarity=-0.093  Sum_probs=38.6

Q ss_pred             CChhhHHHHHHHHHHcCCCCchHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCcccCHHHHHHHHHHhhh----hCC
Q 000951          890 GNFQGAFKLKDEMEALGISSSDVAESAMVRGLAH----CGKVEEAMLVLNRMLRMRLVPTIATFTTLIHKFCK----EAK  961 (1211)
Q Consensus       890 g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~eA~~~~~~~~~~~~~p~~~~~~~L~~~~~~----~g~  961 (1211)
                      .+.++|+++|+++.+.|   ++.++..|+..|..    ..+.++|.+.|+++.+.+   ++.+...|+.+|..    ..+
T Consensus        37 ~~~~~a~~~~~~aa~~g---~~~a~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~~g---~~~a~~~Lg~~y~~G~gv~~d  110 (133)
T d1klxa_          37 INKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLN---DQDGCLILGYKQYAGKGVVKN  110 (133)
T ss_dssp             SCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCC
T ss_pred             cCHHHHHHHHhhhhccc---chhhhhhHHHhhhhccccchhhHHHHHHHhhhhccC---cchHHHHHHHHHHcCCccCCC
Confidence            34455555555554443   23344444444432    233555555555555544   34444555555443    235


Q ss_pred             HHHHHHHHHHHHhc
Q 000951          962 FVDALKLKGTMELS  975 (1211)
Q Consensus       962 ~~~A~~~~~~~~~~  975 (1211)
                      .++|...|+...+.
T Consensus       111 ~~~A~~~~~~Aa~~  124 (133)
T d1klxa_         111 EKQAVKTFEKACRL  124 (133)
T ss_dssp             HHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHC
Confidence            55555555544443

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=96.64  E-value=0.02  Score=50.76  Aligned_cols=111  Identities=10%  Similarity=-0.021  Sum_probs=68.6

Q ss_pred             cHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhcchhhHHHHHHHHHHcCCCCChhHHHHHHHHHHh----cCChhhHH
Q 000951          821 EMGKAFDLFNIMNMLGVVPDTNTQDAIIMGLKRIAAFQESHFVLRGMAEKGLTPKCTQYITLINGMCR----VGNFQGAF  896 (1211)
Q Consensus       821 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~g~~p~~~~~~~l~~~~~~----~g~~~eA~  896 (1211)
                      ++++|+++|++..+.+   +......|+.  ....+.++|+.+|++..+.|   +..++..|+..|..    ..+.++|.
T Consensus         8 d~~~A~~~~~kaa~~g---~~~a~~~l~~--~~~~~~~~a~~~~~~aa~~g---~~~a~~~Lg~~y~~g~~~~~d~~~A~   79 (133)
T d1klxa_           8 DLKKAIQYYVKACELN---EMFGCLSLVS--NSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAA   79 (133)
T ss_dssp             HHHHHHHHHHHHHHTT---CTTHHHHHHT--CTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred             CHHHHHHHHHHHHHCC---Chhhhhhhcc--ccccCHHHHHHHHhhhhccc---chhhhhhHHHhhhhccccchhhHHHH
Confidence            4556666666655543   2233333332  23345667777777766633   34555666666654    45677888


Q ss_pred             HHHHHHHHcCCCCchHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCc
Q 000951          897 KLKDEMEALGISSSDVAESAMVRGLAH----CGKVEEAMLVLNRMLRMRL  942 (1211)
Q Consensus       897 ~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~eA~~~~~~~~~~~~  942 (1211)
                      ++|+++.+.|   ++.+...|+.+|..    ..+.++|...|+++.+.+.
T Consensus        80 ~~~~~aa~~g---~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G~  126 (133)
T d1klxa_          80 QYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS  126 (133)
T ss_dssp             HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred             HHHhhhhccC---cchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCCC
Confidence            8888887765   34556667777765    3568888888888888774

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.66  E-value=0.15  Score=43.10  Aligned_cols=67  Identities=9%  Similarity=0.029  Sum_probs=34.9

Q ss_pred             hhHHHHHHHHHHhcC---ChhhHHHHHHHHHHcCCCCc-hHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCcc
Q 000951          876 CTQYITLINGMCRVG---NFQGAFKLKDEMEALGISSS-DVAESAMVRGLAHCGKVEEAMLVLNRMLRMRLV  943 (1211)
Q Consensus       876 ~~~~~~l~~~~~~~g---~~~eA~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~  943 (1211)
                      ..+-...+.++.+..   +.++|+.+++.+.+.+ +.+ ...++.++.+|.+.|++++|++.++++++.+|.
T Consensus        35 ~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~-p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~  105 (124)
T d2pqrb1          35 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEA-ESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERN  105 (124)
T ss_dssp             HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHC-GGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT
T ss_pred             cchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcC-chhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence            344455555555443   3345556665555432 222 244555566666666666666666666665543

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.50  E-value=0.16  Score=42.86  Aligned_cols=72  Identities=10%  Similarity=-0.002  Sum_probs=41.5

Q ss_pred             CchHHHHHHHHHHHhcCC---HHHHHHHHHHHHhCCcccCHHHHHHHHHHhhhhCCHHHHHHHHHHHHhcCCCCchH
Q 000951          909 SSDVAESAMVRGLAHCGK---VEEAMLVLNRMLRMRLVPTIATFTTLIHKFCKEAKFVDALKLKGTMELSGVKLDVV  982 (1211)
Q Consensus       909 ~~~~~~~~l~~~~~~~g~---~~eA~~~~~~~~~~~~~p~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~  982 (1211)
                      +...+....++++.+..+   .++|+.+++++++.++.-....|..|+-+|.+.|++++|...++...+.  +|++.
T Consensus        33 ~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~i--eP~n~  107 (124)
T d2pqrb1          33 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH--ERNNK  107 (124)
T ss_dssp             SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCH
T ss_pred             CCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcc--CCCcH
Confidence            344455555555655433   4566667766666543312356666666777777777777766655544  66544

>d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Bacterial muramidases
family: Bacterial muramidases
domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain
species: Escherichia coli [TaxId: 562]

Probab=93.94  E-value=5.1  Score=42.91  Aligned_cols=410  Identities=8%  Similarity=-0.043  Sum_probs=194.8

Q ss_pred             HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH--cCCCHHHHHHHHHHhhhCCCCc-cHHHHHHHHHHHHHcC
Q 000951          533 DGYGTLGDGLKAFSMFDEMVKLGHHPSIFTYGSLLKGLC--KGGNLKEAKRFLNSLHHIPSAV-DTVAYNTILAETCKSG  609 (1211)
Q Consensus       533 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~--~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g  609 (1211)
                      .-..+.|+...+.++...+.+  . | ...|...-..-.  .....++...+++.-   +..| ........+..+.+.+
T Consensus        14 ~~a~~~~~~~~~~~~~~~L~d--y-p-L~pYl~~~~l~~~~~~~~~~~i~~Fl~~~---p~~P~~~~lr~~~l~~L~~~~   86 (450)
T d1qsaa1          14 KQAWDNRQMDVVEQMMPGLKD--Y-P-LYPYLEYRQITDDLMNQPAVTVTNFVRAN---PTLPPARTLQSRFVNELARRE   86 (450)
T ss_dssp             HHHHHTTCHHHHHHHSGGGTT--S-T-THHHHHHHHHHHTGGGCCHHHHHHHHHHC---TTCHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHCCCHHHHHHHHhhhcC--C-C-CHHHHHHHHHHhccccCCHHHHHHHHHHC---CCChhHHHHHHHHHHHHHhcc
Confidence            334567788877777766632  1 2 233333322222  223444444444432   2211 1223334455666777


Q ss_pred             CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 000951          610 NLWEAIVLLDEMVQFNLLPDRYTYTILLAGLCRKGKVVSALLFFEKVVSKRTFSPNNVMFTCLVDGLFKAGQSKAAMHIS  689 (1211)
Q Consensus       610 ~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~  689 (1211)
                      ++.+.+..+.     ..+++...-..+..+....|+..+|......+-..+...|+..  .                .++
T Consensus        87 ~w~~~~~~~~-----~~p~~~~~~c~~~~A~~~~g~~~~a~~~~~~lW~~~~~~p~~c--~----------------~l~  143 (450)
T d1qsaa1          87 DWRGLLAFSP-----EKPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKSQPNAC--D----------------KLF  143 (450)
T ss_dssp             CHHHHHHHCC-----SCCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSCCCTHH--H----------------HHH
T ss_pred             CHHHHHHhcc-----CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchHH--H----------------HHH
Confidence            7765443331     1233444445566667778888888887777777664455431  1                223


Q ss_pred             HHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCC
Q 000951          690 KIMDKEGVYPDTIAFNAVMDGFSRMGNMMMANDLLSTMRSRKLCPSLATYNILLHGYSKKKDLLMCSMLLNTMKMEGLLP  769 (1211)
Q Consensus       690 ~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p  769 (1211)
                      ..+.+.| ..+...+-.-+......|++..|..+...+...    ........+........   +...   ....  .+
T Consensus       144 ~~~~~~~-~lt~~~~~~R~~~~l~~~~~~~a~~l~~~l~~~----~~~~~~a~~~l~~~p~~---~~~~---~~~~--~~  210 (450)
T d1qsaa1         144 SVWRASG-KQDPLAYLERIRLAMKAGNTGLVTVLAGQMPAD----YQTIASAIISLANNPNT---VLTF---ARTT--GA  210 (450)
T ss_dssp             HHHHHTT-CSCHHHHHHHHHHHHHTTCHHHHHHHHHTCCGG----GHHHHHHHHHHHHCGGG---HHHH---HHHS--CC
T ss_pred             HHHHhcC-CCCHHHHHHHHHHHHHcCChhhHHHHHhhCChh----HHHHHHHHHHHHhChHh---HHHH---HhcC--CC
Confidence            3333333 233333333444555667777777766543211    22233333333332222   2111   1111  12


Q ss_pred             CHHHHHHHHHHHH--hcCChHHHHHHHHHHHHcCCCCCHhhHHH----HHHHHHhcCcHHHHHHHHHHHHHCCCCCChhh
Q 000951          770 DKLTCHSLILGFC--ETGMLEVGFKFLKKMIAEGTMVDCFTFNV----LMRKCCEAGEMGKAFDLFNIMNMLGVVPDTNT  843 (1211)
Q Consensus       770 ~~~~~~~l~~~~~--~~g~~~~A~~~~~~~~~~~~~~~~~~~~~----l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~  843 (1211)
                      +......+..++.  ...+.+.|...+......... +......    +...+...+..+.+...++......  .+...
T Consensus       211 ~~~~~~~~~~~l~rla~~d~~~a~~~l~~~~~~~~~-~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~--~~~~~  287 (450)
T d1qsaa1         211 TDFTRQMAAVAFASVARQDAENARLMIPSLAQAQQL-NEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--QSTSL  287 (450)
T ss_dssp             CHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHTTC-CHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--CCHHH
T ss_pred             ChhhhHHHHHHHHHHhccChhHHHHHHHhhhhcccc-cHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhcccc--cchHH
Confidence            2222211222222  234667777777776654222 2111111    2222233455667777776665533  22222


Q ss_pred             HHHHHHHHHhhcchhhHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCchHHHHHHHHHHHh
Q 000951          844 QDAIIMGLKRIAAFQESHFVLRGMAEKGLTPKCTQYITLINGMCRVGNFQGAFKLKDEMEALGISSSDVAESAMVRGLAH  923 (1211)
Q Consensus       844 ~~~l~~~~~~~g~~~eA~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~  923 (1211)
                      ....+......+++..+...++.+... .........-++.++...|+.++|...|..+...   ++  .|..|+..  +
T Consensus       288 ~~w~~~~al~~~~~~~~~~~~~~l~~~-~~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~~---~~--fYG~LAa~--~  359 (450)
T d1qsaa1         288 IERRVRMALGTGDRRGLNTWLARLPME-AKEKDEWRYWQADLLLERGREAEAKEILHQLMQQ---RG--FYPMVAAQ--R  359 (450)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHSCTT-GGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS---CS--HHHHHHHH--H
T ss_pred             HHHHHHHHHHcCChHHHHHHHHhcCcc-cccHHHHHHHHHHHHHHcCChhhHHHHHHHHhcC---CC--hHHHHHHH--H
Confidence            222333344567777777777765320 1112344566777777788888888777777532   22  33333221  1


Q ss_pred             cCCHHHHHHHHHHHHhCCccc---C-H---HHHHHHHHHhhhhCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhCCC
Q 000951          924 CGKVEEAMLVLNRMLRMRLVP---T-I---ATFTTLIHKFCKEAKFVDALKLKGTMELSGVKLDVVSYNVLISGLCANGD  996 (1211)
Q Consensus       924 ~g~~~eA~~~~~~~~~~~~~p---~-~---~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~  996 (1211)
                      .|..-   .     +...+.|   . .   ..-...+..+...|...+|...+..+...   .+......++......|.
T Consensus       360 Lg~~~---~-----~~~~~~~~~~~~~~~~~~~~~ra~~L~~~g~~~~A~~e~~~l~~~---~~~~~~~~la~lA~~~g~  428 (450)
T d1qsaa1         360 IGEEY---E-----LKIDKAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKS---KSKTEQAQLARYAFNNQW  428 (450)
T ss_dssp             TTCCC---C-----CCCCCCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTT---CCHHHHHHHHHHHHHTTC
T ss_pred             cCCCC---C-----CCcCCCCccHHHhhhcChHHHHHHHHHHcCCchHHHHHHHHHHhC---CCHHHHHHHHHHHHHCCC
Confidence            22100   0     0000000   0 0   01122345566778888887766654432   234455556666667777


Q ss_pred             hhHHHHHHHHH
Q 000951          997 VMPAFELYEEM 1007 (1211)
Q Consensus       997 ~~~a~~~~~~~ 1007 (1211)
                      ++.|+......
T Consensus       429 ~~~aI~a~~~~  439 (450)
T d1qsaa1         429 WDLSVQATIAG  439 (450)
T ss_dssp             HHHHHHHHHHT
T ss_pred             hhHHHHHHHHH
Confidence            77777665443

>d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Hypothetical protein ST1625
family: Hypothetical protein ST1625
domain: Hypothetical protein ST1625
species: Archaeon Sulfolobus tokodaii [TaxId: 111955]

Probab=91.91  E-value=2.8  Score=34.55  Aligned_cols=58  Identities=19%  Similarity=0.207  Sum_probs=26.8

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 000951          673 VDGLFKAGQSKAAMHISKIMDKEGVYPDTIAFNAVMDGFSRMGNMMMANDLLSTMRSRK  731 (1211)
Q Consensus       673 ~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~  731 (1211)
                      ++....+|+-++-.+++..+.+.+ .+++.....+..+|.+.|...++.+++.++-++|
T Consensus        93 Ld~lv~~~kkd~Ld~i~~~l~kn~-~i~~~~llkia~A~kkig~~re~nell~~ACe~G  150 (161)
T d1wy6a1          93 LDILVIQGKRDKLEEIGREILKNN-EVSASILVAIANALRRVGDERDATTLLIEACKKG  150 (161)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHC--C-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHhccHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHh
Confidence            344444455444444444444322 4444444444555555555555555555444443

>d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Bacterial muramidases
family: Bacterial muramidases
domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain
species: Escherichia coli [TaxId: 562]

Probab=91.77  E-value=9.8  Score=40.50  Aligned_cols=413  Identities=9%  Similarity=0.027  Sum_probs=230.1

Q ss_pred             HHHHHHcCCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH--hcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHc
Q 000951          496 LVASLCKGGKVCEAEDYVGHMKRIGVVPNSITFDCMIDGYG--TLGDGLKAFSMFDEMVKLGHHPSI-FTYGSLLKGLCK  572 (1211)
Q Consensus       496 li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~--~~g~~~~A~~~~~~m~~~~~~p~~-~~~~~ll~~~~~  572 (1211)
                      .+.-..+.|+...+.++...+...   | ...|-..-..-.  ......+....+++   ..-.|-. ..-...+..+.+
T Consensus        12 ~a~~a~~~~~~~~~~~~~~~L~dy---p-L~pYl~~~~l~~~~~~~~~~~i~~Fl~~---~p~~P~~~~lr~~~l~~L~~   84 (450)
T d1qsaa1          12 QIKQAWDNRQMDVVEQMMPGLKDY---P-LYPYLEYRQITDDLMNQPAVTVTNFVRA---NPTLPPARTLQSRFVNELAR   84 (450)
T ss_dssp             HHHHHHHTTCHHHHHHHSGGGTTS---T-THHHHHHHHHHHTGGGCCHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHhhhcCC---C-CHHHHHHHHHHhccccCCHHHHHHHHHH---CCCChhHHHHHHHHHHHHHh
Confidence            344566788888888877776532   3 233333322222  23344444443332   2112212 223344567778


Q ss_pred             CCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHH
Q 000951          573 GGNLKEAKRFLNSLHHIPSAVDTVAYNTILAETCKSGNLWEAIVLLDEMVQFNLLPDRYTYTILLAGLCRKGKVVSALLF  652 (1211)
Q Consensus       573 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~  652 (1211)
                      .++++.....+    .. .+.+...-..+..+....|+.++|...+..+=..|..                 ..+....+
T Consensus        85 ~~~w~~~~~~~----~~-~p~~~~~~c~~~~A~~~~g~~~~a~~~~~~lW~~~~~-----------------~p~~c~~l  142 (450)
T d1qsaa1          85 REDWRGLLAFS----PE-KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKS-----------------QPNACDKL  142 (450)
T ss_dssp             TTCHHHHHHHC----CS-CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSC-----------------CCTHHHHH
T ss_pred             ccCHHHHHHhc----cC-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC-----------------CchHHHHH
Confidence            88877654433    11 2235666667778888899999988877766544321                 12222334


Q ss_pred             HHHHHHcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCC
Q 000951          653 FEKVVSKRTFSPNNVMFTCLVDGLFKAGQSKAAMHISKIMDKEGVYPDTIAFNAVMDGFSRMGNMMMANDLLSTMRSRKL  732 (1211)
Q Consensus       653 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~  732 (1211)
                      |......+  ..+...+-.-+......|++..|..+...+.    ..........+.........   ...   ....  
T Consensus       143 ~~~~~~~~--~lt~~~~~~R~~~~l~~~~~~~a~~l~~~l~----~~~~~~~~a~~~l~~~p~~~---~~~---~~~~--  208 (450)
T d1qsaa1         143 FSVWRASG--KQDPLAYLERIRLAMKAGNTGLVTVLAGQMP----ADYQTIASAIISLANNPNTV---LTF---ARTT--  208 (450)
T ss_dssp             HHHHHHTT--CSCHHHHHHHHHHHHHTTCHHHHHHHHHTCC----GGGHHHHHHHHHHHHCGGGH---HHH---HHHS--
T ss_pred             HHHHHhcC--CCCHHHHHHHHHHHHHcCChhhHHHHHhhCC----hhHHHHHHHHHHHHhChHhH---HHH---HhcC--
Confidence            44444444  3344444455566777899998888765442    11233444444444332222   221   1111  


Q ss_pred             CCCHHHHHHHHHHHHc--cCChHHHHHHHHHHHHCCCCCCHHH--HH-HHHHHHHhcCChHHHHHHHHHHHHcCCCCCHh
Q 000951          733 CPSLATYNILLHGYSK--KKDLLMCSMLLNTMKMEGLLPDKLT--CH-SLILGFCETGMLEVGFKFLKKMIAEGTMVDCF  807 (1211)
Q Consensus       733 ~p~~~~~~~l~~~~~~--~g~~~~A~~~~~~~~~~g~~p~~~~--~~-~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~  807 (1211)
                      .++......+..++.+  ..+.+.|...+.........+....  .. .+.......+..+.+..........+  .+..
T Consensus       209 ~~~~~~~~~~~~~l~rla~~d~~~a~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~--~~~~  286 (450)
T d1qsaa1         209 GATDFTRQMAAVAFASVARQDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--QSTS  286 (450)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--CCHH
T ss_pred             CCChhhhHHHHHHHHHHhccChhHHHHHHHhhhhcccccHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhcccc--cchH
Confidence            2233333333333333  4688899999988776432222211  11 12233344577788888888877653  3333


Q ss_pred             hHHHHHHHHHhcCcHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhcchhhHHHHHHHHHHcCCCCChhHHHHHHHHHH
Q 000951          808 TFNVLMRKCCEAGEMGKAFDLFNIMNMLGVVPDTNTQDAIIMGLKRIAAFQESHFVLRGMAEKGLTPKCTQYITLINGMC  887 (1211)
Q Consensus       808 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~g~~p~~~~~~~l~~~~~  887 (1211)
                      ....++......+++..+...++.+... .....--..-++.++...|+.++|...|..+..   .++   |.....+- 
T Consensus       287 ~~~w~~~~al~~~~~~~~~~~~~~l~~~-~~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~---~~~---fYG~LAa~-  358 (450)
T d1qsaa1         287 LIERRVRMALGTGDRRGLNTWLARLPME-AKEKDEWRYWQADLLLERGREAEAKEILHQLMQ---QRG---FYPMVAAQ-  358 (450)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHSCTT-GGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT---SCS---HHHHHHHH-
T ss_pred             HHHHHHHHHHHcCChHHHHHHHHhcCcc-cccHHHHHHHHHHHHHHcCChhhHHHHHHHHhc---CCC---hHHHHHHH-
Confidence            4444455556778999999999887531 112233447788999999999999999999864   232   44433322 


Q ss_pred             hcCC-hhhHHHHHHHHHHcCCCCchHH----HHHHHHHHHhcCCHHHHHHHHHHHHhCCcccCHHHHHHHHHHhhhhCCH
Q 000951          888 RVGN-FQGAFKLKDEMEALGISSSDVA----ESAMVRGLAHCGKVEEAMLVLNRMLRMRLVPTIATFTTLIHKFCKEAKF  962 (1211)
Q Consensus       888 ~~g~-~~eA~~~~~~~~~~~~~~~~~~----~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~p~~~~~~~L~~~~~~~g~~  962 (1211)
                      +.|. +.-...      ....++....    -...+..+...|+..+|...+..+.+..   +......++....+.|.+
T Consensus       359 ~Lg~~~~~~~~------~~~~~~~~~~~~~~~~~ra~~L~~~g~~~~A~~e~~~l~~~~---~~~~~~~la~lA~~~g~~  429 (450)
T d1qsaa1         359 RIGEEYELKID------KAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKSK---SKTEQAQLARYAFNNQWW  429 (450)
T ss_dssp             HTTCCCCCCCC------CCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTTC---CHHHHHHHHHHHHHTTCH
T ss_pred             HcCCCCCCCcC------CCCccHHHhhhcChHHHHHHHHHHcCCchHHHHHHHHHHhCC---CHHHHHHHHHHHHHCCCh
Confidence            2222 100000      0000011110    1133567888999999999999887642   555677888888999999


Q ss_pred             HHHHHHHH
Q 000951          963 VDALKLKG  970 (1211)
Q Consensus       963 ~~A~~~~~  970 (1211)
                      +.|+....
T Consensus       430 ~~aI~a~~  437 (450)
T d1qsaa1         430 DLSVQATI  437 (450)
T ss_dssp             HHHHHHHH
T ss_pred             hHHHHHHH
Confidence            99998643

>d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Hypothetical protein ST1625
family: Hypothetical protein ST1625
domain: Hypothetical protein ST1625
species: Archaeon Sulfolobus tokodaii [TaxId: 111955]

Probab=86.84  E-value=7.2  Score=32.08  Aligned_cols=61  Identities=20%  Similarity=0.284  Sum_probs=30.6

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 000951          390 SVIDGLCKCGLLDEAMQLFNKMFKDGLNPDLITFSVLINGFCKVGMTRKAKAVLCKMYRDGL  451 (1211)
Q Consensus       390 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~  451 (1211)
                      .-++.+.+.|+-+.-.++++++.+.+ +|++.....+..+|-+.|...++.+++.++-+.|+
T Consensus        91 lALd~lv~~~kkd~Ld~i~~~l~kn~-~i~~~~llkia~A~kkig~~re~nell~~ACe~G~  151 (161)
T d1wy6a1          91 KALDILVIQGKRDKLEEIGREILKNN-EVSASILVAIANALRRVGDERDATTLLIEACKKGE  151 (161)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHC--C-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHhccHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhH
Confidence            33444555555555555555544432 44444555555555555555555555555555543