Citrus Sinensis ID: 000959

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------1030------1040------1050------1060------1070------1080------1090------1100------1110------1120------1130------1140------1150------1160------1170------1180------1190------1200------121
MGKDVEEGEISDTASVEEISEEDFKIKQEEVVKVVKETKPIKVGGGEAAARVWTMRDLYNKYPAICRGYGPGLHNLAWAQAVQNKPLNEIFVMEAEQDDVSKRSSPASSVASVNSGAAAGKDDKKVVEKVVIDDSGDEIEKEEGELEEGEIELDLESESNEKVSEQVKEEMKLINVESIREALESVLRGDISFEGVCSKLEFTLESLRELVNENNVPTKDALIQLAFSAVQSVHSVFCSMNHVLKEQNKEILSRLLSLIKSHEPPLFSSNQIKEMEAMLSSLVTRANDKEKDMLAMHGVNGKDSNIVTENAVNDLNFKEKVPLPVDSLMQNKPLEASKPGPPGYRSRGVLLPLLDPHKVHDVDSLPSPTRETTPSVPVQRALVVGDGMVKSWAAAAKLSHNAEVHKTPHYETDALRAFSSYQQKFGRNSFFMNSELPSPTPSEESGDGDGDTGGEISSATAVDQPKPVNMPTLGQQPVSSQPMDISQPMDISSVQALTTANNSAPASSGYNPVVKPNPVVKAPIKSRDPRLRFASSNALNLNHQPAPILHNAPKVEPVGRVMSSRKQKTVEEPVLDGPALKRQRNGFENSGVVRDEKNIYGSGGWLEDTDMFEPQIMNRNLLVDSAESNSRKLDNGATSPITSGTPNVVVSGNEPAPATTPSTTVSLPALLKDIAVNPTMLLNILKMGQQQKLAADAQQKSNDSSMNTMHPPIPSSIPPVSVTCSIPSGILSKPMDELGKVRMKPRDPRRVLHGNALQRSGSLGPEFKTDGPSAPCTQGSKENLNFQKQLGAPEAKPVLSQSVLQPDITQQFTKNLKHIADFMSVSQPLTSEPMVSQNSPIQPGQIKSGADMKAVVTNHDDKQTGTGSGPEAGPVGAHPQSAWGDVEHLFEGYDDQQKAAIQKERTRRLEEQKKMFSARKLCLVLDLDHTLLNSAKFHEVDPVHDEILRKKEEQDREKPHRHLFRFPHMGMWTKLRPGIWTFLERASKLFEMHLYTMGNKLYATEMAKVLDPKGVLFAGRVISRGDDGDPFDGDERVPKSKDLEGVLGMESAVVIIDDSVRVWPHNKLNLIVVERYTYFPCSRRQFGLLGPSLLEIDHDERSEDGTLASSLGVIERLHKIFFSHQSLDDVDVRNILAAEQRKILAGCRIVFSRVFPVGEANPHLHPLWQTAEQFGAVCTKHIDDQVTHVVANSLGTDKVLLVVFSLLS
ccccccccccccccccccccHHHcccccccccccccccccccccccccccEEEEEccccccccccccccccccHHHHHHHHHHccccccHHHHcccccccccccccccccccccccccccccccccccEEEccccccccccccccccccccccccccccHHHHHHHHHHHHHHHcHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHccccccccccHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHccccccccccccccccHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHccccEEEEEEccccEEEccccccccccHHHHHHHcccccccccccEEccccccEEEEEccccHHHHHHHHHHHcEEEEEEcccHHHHHHHHHHHccccccccccEEEccccccccccccccccccccccccccccEEEEEEccccccccccccEEEEccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccccEEEEccEEccccccccccHHHHHHHHcccEEEccccccccEEEEccccHHHHHHHHHHHHc
cccccccccccccccEEEEEHHHccccccEEEEEccccccccccccccccHHHHHHHHHHHcHHHccccHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHccccHHHHcHHHHHHHHHHHHccccccccHHHHHHHHHHHHHEEEccccccccEEEEEcccccccccccccccccccccccccccHHHHccccccccccccccccccccccccHHcHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHcccccccccccccccccccccccccccccccEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHEEcccccccccccccccccccccccccccccccccccccccccccccHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHcHcHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccEEEEcccccHHHHcccccccccccccHcccccccccccccccccccccHHcccccccccccccccccccccHcHcccccccccccccccccccccccccccccccccccHHHccccccccccccccccccccccccccccccccccHHHHHHcccccccccccHHHHHHHHHHHHHHHHccEEEEEEccHHHEEccccccccccccccccccccccccccccEccccccccEEEEcccHHHHHHHHHHHHHHEEEHHHcHHHHHHHHHHHHcccccEcccEEEEccccccccccccccccccccHHccccccEEEEEEcccccccccccccEEEEEEEEccccccccccccccHHHHcccccccccHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHcccEEEEEcEEEccccccccHHHHHHHHHcccEEEcccccccEEEEEccccHHHHHHHHHHHHc
mgkdveegeisdtasveeiseedfKIKQEEVVKVVKetkpikvgggeAAARVWTMRDLYnkypaicrgygpglhnLAWAQavqnkplnEIFVMEAEqddvskrsspassvasvnsgaaagkddkKVVEKVVIDDsgdeiekeegeleegeieldlesesnEKVSEQVKEEMKLINVESIREALESVLRGDISFEGVCSKLEFTLESLRELvnennvptkDALIQLAFSAVQSVHSVFCSMNHVLKEQNKEILSRLLSLIkshepplfssnqIKEMEAMLSSLVTRANdkekdmlamhgvngkdsnivtenavndlnfkekvplpvdslmqnkpleaskpgppgyrsrgvllplldphkvhdvdslpsptrettpsvpvqRALVVGDGMVKSWAAAAKLShnaevhktphyetdALRAFSSYqqkfgrnsffmnselpsptpseesgdgdgdtggeissatavdqpkpvnmptlgqqpvssqpmdisqpmdisSVQALTtannsapassgynpvvkpnpvvkapiksrdprlrfassnalnlnhqpapilhnapkvepvgrvmssrkqktveepvldgpalkrqrngfensgvvrdekniygsggwledtdmfepqiMNRNLlvdsaesnsrkldngatspitsgtpnvvvsgnepapattpsttvslpALLKDIAVNPTMLLNILKMGQQQKLAADAqqksndssmntmhppipssippvsvtcsipsgilskpmdelgkvrmkprdprrvlhgnalqrsgslgpefktdgpsapctqgskeNLNFQkqlgapeakpvlsqsvlqpdiTQQFTKNLKHIADFmsvsqpltsepmvsqnspiqpgqiksgaDMKAVVtnhddkqtgtgsgpeagpvgahpqsawgdvehLFEGYDDQQKAAIQKERTRRLEEQKKMFSARKLCLVLDLDhtllnsakfhevdpvhDEILRKkeeqdrekphrhlfrfphmgmwtklrpGIWTFLERASKLFEMHLYTMGNKLYATEMakvldpkgvlfagrvisrgddgdpfdgdervpkskdlegvlGMESAVVIIddsvrvwphnkLNLIVVERYtyfpcsrrqfgllgpslleidhdersedgtlasSLGVIERLHKIFFShqslddvdVRNILAAEQRKILAGCRIvfsrvfpvgeanphlhplwqTAEQFGAVCTKHIDDQVTHVVANSLGTDKVLLVVFSLLS
mgkdveegeisdtasveeiseedfkikqeevvkvvketkpikvgggeaaarvWTMRDLYNKYPAICRGYGPGLHNLAWAQAVQNKPLNEIFVMEAEQDDVSkrsspassvasvnsgaaagkddkkvvEKVVIddsgdeiekeegeleegeieldlesesneKVSEQVKEEMKLINVESIREALESVLRGDISFEGVCSKLEFTLESLRELVNENNVPTKDALIQLAFSAVQSVHSVFCSMNHVLKEQNKEILSRLLSLIKSHEPPLFSSNQIKEMEAMLSSLVTRANDKEKDMLAMhgvngkdsniVTENAVNDLNFKEKVplpvdslmqnkpleaskpgppgyRSRGVLLPLLDPHKVHDVDSlpsptrettpsvpvQRALVVGDGMVKSWAAAAKLSHNAEVHKTPHYETDALRAFSSYQQKFGRNSFFMNSELPSPTPSEESGDGDGDTGGEISSATAVDQPKPVNMPTLGQQPVSSQPMDISQPMDISSVQALTTANNsapassgynpvvkpnPVVKAPIKSRDPRLRFASSNALNLNHQPAPILHNAPKVEPVGRVMSsrkqktveepvldgpalkrqrngfensgvvrdekniyGSGGWLEDTDMFEPQIMNRNLLVDSAESNSRkldngatspitsgtpnvVVSGNEPAPATTPSTTVSLPALLKDIAVNPTMLLNILKMGQQQKLAADAQQKSNDSSMNTMHPPIPSSIPPVSVTCSIPSGILSKPMDELGKVrmkprdprrvlhgnalqrsgslgpefKTDGPSAPCTQGSKENLNFQKQLGAPEAKPVLSQSVLQPDITQQFTKNLKHIADFMSVSQPLTSEPMVSQNSPIQPGQIKSGADMKAVVTNHDDKQTGTGSGPEAGPVGAHPQSAWGDVEHLFEGYDDQQKAAIQKERTRRLEEQKKMFSARKLCLVLDLDHTLLnsakfhevdpvhdeilrkkeeqdrekphrhlfrfphmgmwtKLRPGIWTFLERASKLFEMHLYTMGNKLYATEMAKVLDPKGVLFAGRVisrgddgdpfdgdervpkskdlegvlGMESAVViiddsvrvwphNKLNLIVVERYTYFPCSRRQFGLLGPSLLEIDHDERSEDGTLASSLGVIERLHKIFFSHQSLDDVDVRNILAAEQRKILAGCRIVFSRVFPVGEANPHLHPLWQTAEQFGAVCTKHIDDQVTHVVanslgtdkVLLVVFSLLS
MGKDVEEGEISDTASVEEISEEDFkikqeevvkvvketkpikvGGGEAAARVWTMRDLYNKYPAICRGYGPGLHNLAWAQAVQNKPLNEIFVMEAEQDDvskrsspassvasvnsgaaaGkddkkvvekvviddsgdeiekeegeleegeieldlesesNEKVSEQVKEEMKLINVESIREALESVLRGDISFEGVCSKLEFTLESLRELVNENNVPTKDALIQLAFSAVQSVHSVFCSMNHVLKEQNKEILSRLLSLIKSHEPPLFSSNQIKEMEAMLSSLVTRANDKEKDMLAMHGVNGKDSNIVTENAVNDLNFKEKVPLPVDSLMQNKPLEASKPGPPGYRSRGVLLPLLDPHKVHDVDSLPSPTRETTPSVPVQRALVVGDGMVKSWAAAAKLSHNAEVHKTPHYETDALRAFSSYQQKFGRNSFFMNselpsptpseesgdgdgdtggeissATAVDQPKPVNMPTLGQQPVSSQPMDISQPMDISSVQALTTANNSAPASSGYnpvvkpnpvvkapIKSRDPRLRFASSNALNLNHQPAPILHNAPKVEPVGRVMSSRKQKTVEEPVLDGPALKRQRNGFENSGVVRDEKNIYGSGGWLEDTDMFEPQIMNRNLLVDSAESNSRKLDNGATSPITSGTPNVVVSGNEpapattpsttvslpallKDIAVNPTMLLNILKMGqqqklaadaqqkSNDSSMNTMHppipssippvsvtcsipsGILSKPMDELGKVRMKPRDPRRVLHGNALQRSGSLGPEFKTDGPSAPCTQGSKENLNFQKQLGAPEAKPVLSQSVLQPDITQQFTKNLKHIADFMSVSQPLTSEPMVSQNSPIQPGQIKSGADMKAVVTNHDDKQTGTGSGPEAGPVGAHPQSAWGDVEHLFEGYDDQQKAAIQKERTRRLEEQKKMFSARKlclvldldhtllNSAKFHEVDPVHDEILRKKEEQDREKPHRHLFRFPHMGMWTKLRPGIWTFLERASKLFEMHLYTMGNKLYATEMAKVLDPKGVLFAGRVISRGDDGDPFDGDERVPKSKDLEGVLGMESAVVIIDDSVRVWPHNKLNLIVVERYTYFPCSRRQFGLLGPSLLEIDHDERSEDGTLASSLGVIERLHKIFFSHQSLDDVDVRNILAAEQRKILAGCRIVFSRVFPVGEANPHLHPLWQTAEQFGAVCTKHIDDQVTHVVANSLGTDKVLLVVFSLLS
*****************************EVVKVVKETKPIKVGGGEAAARVWTMRDLYNKYPAICRGYGPGLHNLAWAQAVQNKPLNEIFVM*******************************************************************************LINVESIREALESVLRGDISFEGVCSKLEFTLESLRELVNENNVPTKDALIQLAFSAVQSVHSVFCSMNHVLKEQNKEILSRLLSLI*******************************************************************************************L***************************QRALVVGDGMVKSWAAAAKLSHNAEVHKTPHYETDALRAFS*Y*******************************************************************************************************************************************************************************KNIYGSGGWLEDTDMFEPQIMN***********************************************SLPALLKDIAVNPTMLLNILKM********************************************************************************************************************************L*HI*****************************************************************DVEHLFE************************FSARKLCLVLDLDHTLLNSAKFHEVDPVH*****************HLFRFPHMGMWTKLRPGIWTFLERASKLFEMHLYTMGNKLYATEMAKVLDPKGVLFAGRVIS*********************GVLGMESAVVIIDDSVRVWPHNKLNLIVVERYTYFPCSRRQFGLLGPSLLEIDH*******TLASSLGVIERLHKIFFSHQSLDDVDVRNILAAEQRKILAGCRIVFSRVFPVGEANPHLHPLWQTAEQFGAVCTKHIDDQVTHVVANSLGTDKVLLVVFSL**
******E*************EE*****************************VWTMRDLYNKYPAICRGYGPGLHNLAWAQAVQNKPLNEIFVME*********************************************************************************VESIREALESVLRGDISFEGVCSKLEFTLESLR***********DALIQLAFSAVQSVHSVFCSMNHV******EILSRLLSLIKSHEPPLFSSNQIKEMEAMLSSLVTRANDKEKDM******************************************************GVLLPLLDPHKVHDVDSL**********VPVQRALVVGDGMVKSWA******************TDALRAFSSYQQKFGRNSFFM**********************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************EHLFEG*****************************CLVLDLDHTLLNSAKFHEVDPVHDEILRKKEEQDREKPHRHLFRFPHMGMWTKLRPGIWTFLERASKLFEMHLYTMGNKLYATEMAKVLDPKGVLFAGRVISRGDDGDPFDGDERVPKSKDLEGVLGMESAVVIIDDSVRVWPHNKLNLIVVERYTYFPCSRRQFGLLGPSLLEIDHDERSEDGTLASSLGVIERLHKIFFSHQSLDDVDVRNILAAEQRKILAGCRIVFSRVFPVGEANPHLHPLWQTAEQFGAVCTKHIDDQVTHVVANSLGTDKVLLVVFSLLS
***************VEEISEEDFKIKQEEVVKVVKETKPIKVGGGEAAARVWTMRDLYNKYPAICRGYGPGLHNLAWAQAVQNKPLNEIFVMEA*****************************KVVEKVVIDDSG****************LDLESESNEKVSEQVKEEMKLINVESIREALESVLRGDISFEGVCSKLEFTLESLRELVNENNVPTKDALIQLAFSAVQSVHSVFCSMNHVLKEQNKEILSRLLSLIKSHEPPLFSSNQIKEMEAMLSSLVTRANDKEKDMLAMHGVNGKDSNIVTENAVNDLNFKEKVPLPVDSLMQNKPLEASKPGPPGYRSRGVLLPLLDPHKVHDV**************PVQRALVVGDGMVKSWAAAAKLSHNAEVHKTPHYETDALRAFSSYQQKFGRNSFFMNSE*****************GGEISSATAVDQPKPVNMPTLGQQPVSSQPMDISQPMDISSVQALTTANNSAPASSGYNPVVKPNPVVKAPIKSRDPRLRFASSNALNLNHQPAPILHNAPKVEPVGRVMSSRKQKTVEEPVLDGPALKRQRNGFENSGVVRDEKNIYGSGGWLEDTDMFEPQIMNRNLLVDSAESNSRKLDNGATSPITSGTPNVVVSGNEPAPATTPSTTVSLPALLKDIAVNPTMLLNILKM*******************NTMHPPIPSSIPPVSVTCSIPSGILSKPMDELGKVRMKPRDPRRVLHGNALQRSGSLGPEFKTDGPSAPCTQGSKENLNFQKQLGAPEAKPVLSQSVLQPDITQQFTKNLKHIADFMSVSQPL**********PIQPGQIKSGADMKAVVTNH*******************PQSAWGDVEHLFEGYDDQQKAAIQKERTRRLEEQKKMFSARKLCLVLDLDHTLLNSAKFHEVDPVHDEILRKK********HRHLFRFPHMGMWTKLRPGIWTFLERASKLFEMHLYTMGNKLYATEMAKVLDPKGVLFAGRVISRGDDGDPFDGDERVPKSKDLEGVLGMESAVVIIDDSVRVWPHNKLNLIVVERYTYFPCSRRQFGLLGPSLLEIDHDERSEDGTLASSLGVIERLHKIFFSHQSLDDVDVRNILAAEQRKILAGCRIVFSRVFPVGEANPHLHPLWQTAEQFGAVCTKHIDDQVTHVVANSLGTDKVLLVVFSLLS
*************ASVEEISEEDFKIKQEEVVKVVKETK*******EAAARVWTMRDLYNKYPAICRGYGPGLHNLAWAQAVQNKPLNEIFV*******************************************************EGEIELDLESESN***SEQVKEEMKLINVESIREALESVLRGDISFEGVCSKLEFTLESLRELVNENNVPTKDALIQLAFSAVQSVHSVFCSMNHVLKEQNKEILSRLLSLIKSHEPPLFSSNQIKEMEAMLSSLVTRANDKEKDMLAMHGVN************************************SKPGPPGYRSRGVLLPLLDPHKVHDVDSLPSPTRETTPSVPVQRALVVGDGMVKSWAAAAKLSHNAEVHKTPHYETDALRAFSSYQQKFGRNSFFMNSEL******************************PVNMPTLG*****************************************************DPRLRFASSNALN***********APK**PVGRV********V*EPVLDGPALKRQRNGFENSGVVRDEKNIYGSGGWLEDTDMFEPQIMNRN*******************************************TVSLPALLKDIAVNPTMLLNILKMGQQQK********************************************ELGKVRMKPRDPRRVLHGN*******************************************************************************************************************************WGDVEHLFEGYDDQQKAAIQKERTRRLEEQKKMFSARKLCLVLDLDHTLLNSAKFHEVDPVHDEILRKKEEQDREKPHRHLFRFPHMGMWTKLRPGIWTFLERASKLFEMHLYTMGNKLYATEMAKVLDPKGVLFAGRVISRGDDGDPFDGDERVPKSKDLEGVLGMESAVVIIDDSVRVWPHNKLNLIVVERYTYFPCSRRQFGLLGPSLL******RSEDGTLASSLGVIERLHKIFFSHQSLDDVDVRNILAAEQRKILAGCRIVFSRVFPVGEANPHLHPLWQTAEQFGAVCTKHIDDQVTHVVANSLGTDKVLLVVFSLLS
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MGKDVEEGEISDTASVEEISEEDFKIKQEEVVKVVKETKPIKVGGGEAAARVWTMRDLYNKYPAICRGYGPGLHNLAWAQAVQNKPLNEIFVMEAEQDDVSKRSSPASSVASVNSGAAAGKDDKKVVEKVVxxxxxxxxxxxxxxxxxxxxxxxxxxxxNEKVSEQVKEEMKLINVESIREALESVLRGDISFEGVCSKLEFTLESLRELVNENNVPTKDALIQLAFSAVQSVHSVFCSMNHVLKEQNKEILSRLLSLIKSHEPPLFSSNQxxxxxxxxxxxxxxxxxxxxxMLAMHGVNGKDSNIVTENAVNDLNFKEKVPLPVDSLMQNKPLEASKPGPPGYRSRGVLLPLLDPHKVHDVDSLPSPTRETTPSVPVQRALVVGDGMVKSWAAAAKLSHNAEVHKTPHYETDALRAFSSYQQKFGRNSFFMNSELPSPTPSEESGDGDGDTGGEISSATAVDQPKPVNMPTLGQQPVSSQPMDISQPMDISSVQALTTANNSAPASSGYNPVVKPNPVVKAPIKSRDPRLRFASSNALNLNHQPAPILHNAPKVEPVGRVMSSRKQKTVEEPVLDGPALKRQRNGFENSGVVRDEKNIYGSGGWLEDTDMFEPQIMNRNLLVDSAESNSRKLDNGATSPITSGTPNVVVSGNEPAPATTPSTTVSLPALLKDIAVNPTMLLNILKMGQQQKLAADAQQKSNDSSMNTMHPPIPSSIPPVSVTCSIPSGILSKPMDELGKVRMKPRDPRRVLHGNALQRSGSLGPEFKTDGPSAPCTQGSKENLNFQKQLGAPEAKPVLSQSVLQPDITQQFTKNLKHIADFMSVSQPLTSEPMVSQNSPIQPGQIKSGADMKAVVTNHDDKQTGTGSGPEAGPVGAHPQSAWGDVEHLFEGYDDQQKAAIQKERTRRLEEQKKMFSARKLCLVLDLDHTLLNSAKFHEVDPVHDEILRKKEEQDREKPHRHLFRFPHMGMWTKLRPGIWTFLERASKLFEMHLYTMGNKLYATEMAKVLDPKGVLFAGRVISRGDDGDPFDGDERVPKSKDLEGVLGMESAVVIIDDSVRVWPHNKLNLIVVERYTYFPCSRRQFGLLGPSLLEIDHDERSEDGTLASSLGVIERLHKIFFSHQSLDDVDVRNILAAEQRKILAGCRIVFSRVFPVGEANPHLHPLWQTAEQFGAVCTKHIDDQVTHVVANSLGTDKVLLVVFSLLS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query1208 2.2.26 [Sep-21-2011]
Q8LL041241 RNA polymerase II C-termi yes no 0.877 0.854 0.487 0.0
Q00IB6440 RNA polymerase II C-termi no no 0.220 0.604 0.458 3e-62
Q7TSG2 960 RNA polymerase II subunit yes no 0.131 0.165 0.366 7e-21
Q9Y5B0 961 RNA polymerase II subunit yes no 0.125 0.157 0.362 3e-20
Q9P376 723 RNA polymerase II subunit yes no 0.142 0.237 0.333 6e-19
Q03254 732 RNA polymerase II subunit yes no 0.156 0.258 0.288 2e-13
Q8SV03411 RNA polymerase II subunit yes no 0.119 0.350 0.279 3e-11
Q66KM5466 CTD small phosphatase-lik no no 0.154 0.401 0.279 5e-08
Q3KQB6466 CTD small phosphatase-lik N/A no 0.154 0.401 0.279 6e-08
Q08BB5469 CTD small phosphatase-lik no no 0.180 0.464 0.275 6e-08
>sp|Q8LL04|CPL3_ARATH RNA polymerase II C-terminal domain phosphatase-like 3 OS=Arabidopsis thaliana GN=CPL3 PE=1 SV=2 Back     alignment and function desciption
 Score =  942 bits (2435), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 593/1216 (48%), Positives = 742/1216 (61%), Gaps = 156/1216 (12%)

Query: 52   VWTMRDLYNKYPAICRGYGPGLHNLAWAQAVQNKPLNEIFVMEAEQDDVSKRSSPASSVA 111
            VWTM +L ++YPA       GL NLAWA+AVQNKP NE  VM+ E         P  S  
Sbjct: 79   VWTMEELISQYPAYRPYANSGLSNLAWARAVQNKPFNEGLVMDYE---------PRES-- 127

Query: 112  SVNSGAAAGKDDKKVVEKVVIDDSGDE----------IEKEEGELEEGEIELDLESE--- 158
                            +K+VI+DS DE          I+  +   ++  +E D ES    
Sbjct: 128  ----------------DKIVIEDSDDEKEEGELEEGEIDLVDNASDDNLVEKDTESVVLI 171

Query: 159  SNEKVSEQ--VKEEMKLINVESIREALES--VLRGDISFEGVCSKLEFTLESLRELVNEN 214
            S +KV +   +KE      V+ IR  LES  ++     FEGVCS++   LESLRELV++N
Sbjct: 172  SADKVEDDRILKERDLEKKVKLIRGVLESTSLVEAQTGFEGVCSRILGALESLRELVSDN 231

Query: 215  N-VPTKDALIQLAFSAVQSVHSVFCSMNHVLKEQNKEILSRLLSLIKSHEPPLFSSNQIK 273
            +  P +D L+QL+F+++Q+++ VFCSMN++ KE+NKE +SRLL+L+  H     S NQ  
Sbjct: 232  DDFPKRDTLVQLSFASLQTINYVFCSMNNISKERNKETMSRLLTLVNDHFSQFLSFNQKN 291

Query: 274  EMEAMLSSLVTRANDKEKDMLAMHGVNGKDSNIVTENAVNDLNFKEKVPLPVDSLMQNK- 332
            E+E M         D  +  +A+      + N      VN +      P   DS +  K 
Sbjct: 292  EIETM-------NQDLSRSAIAVFAGTSSEEN------VNQMT----QPSNGDSFLAKKL 334

Query: 333  PLEASKPGPPGYRSRGVLLPLLDPHKVHDVDSLPSPTRETTPSVPVQRALVVGDGMVKSW 392
              E++  G    RSR  +LPLLD HK HD DSLPSPTRETTPS+PV         MV+  
Sbjct: 335  TSESTHRGAAYLRSRLPMLPLLDLHKDHDADSLPSPTRETTPSLPVNGR----HTMVRPG 390

Query: 393  AAAAKLSHNAEVHKTPHYETDALRAFSSYQQKFGRNSFFMNSELPSPTPSEESGDGDGDT 452
                + S   E  K   YE+DA +A S+YQQKFG NS F   +LPSPTPS E  DG+GD 
Sbjct: 391  FPVGRESQTTEGAKVYSYESDARKAVSTYQQKFGLNSVFKTDDLPSPTPSGEPNDGNGDV 450

Query: 453  GGEISSATAV------------DQPKPVNMPTLGQQPVSSQPMDISQPMDISSVQALTTA 500
            GGE+SS+               D P P N  +    PV++       P  +S + A+   
Sbjct: 451  GGEVSSSVVKSSNPGSHLIYGQDVPLPSNFNSRSM-PVANSVSSTVPPHHLS-IHAI--- 505

Query: 501  NNSAPASSGYNPVVKPNPVVKAPIKSRDPRLRFASSNALNLN--HQPAPILHNAPKVEPV 558
              SAP +S        +  VK   KSRDPRLR A  +A N+      +    N  KVE  
Sbjct: 506  --SAPTAS--------DQTVKPSAKSRDPRLRLAKPDAANVTIYSYSSGDARNLSKVELS 555

Query: 559  GRVMSSRKQKTVEEPVLDGPALKRQRNGFENSGVVRDEKNIYGSGGWLEDTDMFEPQIMN 618
              +++ RKQK  +E ++DGPA KRQ++         D     G+GGWLEDT+       +
Sbjct: 556  ADLVNPRKQKAADEFLIDGPAWKRQKSD-------TDAPKAAGTGGWLEDTE-------S 601

Query: 619  RNLLVDSAESNSRKLDNGATSPITSGTPNVVVSGNEPAPATTPSTTVSLPALLKDIAVNP 678
              LL    ES  R ++NG TS  +S  P   VS ++    T  + T SL +LLKDIAVNP
Sbjct: 602  SGLL--KLESKPRLIENGVTSMTSSVMPTSAVSVSQKV-RTASTDTASLQSLLKDIAVNP 658

Query: 679  TMLLNILKMGQQQKLAADAQQKSNDSSMNTMHPPIPSSIPPVSVTCSIP----------- 727
            TMLLN+LKMG++QK+   A QK  D        P  S  P VS   SIP           
Sbjct: 659  TMLLNLLKMGERQKVPEKAIQKPMDPR-RAAQLPGSSVQPGVSTPLSIPASNALAANSLN 717

Query: 728  SGIL-----SKPMDELGKVRMKPRDPRRVLHGNALQRS-GSLGPEFKTDGPSAPCT---Q 778
            SG+L     + P  E G +RMKPRDPRR+LHG+ LQR+  S+  + K + PS   T   +
Sbjct: 718  SGVLQDSSQNAPAAESGSIRMKPRDPRRILHGSTLQRTDSSMEKQTKVNDPSTLGTLTMK 777

Query: 779  GSKENLNFQKQLGAPE-------AKPVLSQSVLQ---PDITQQFTKNLKHIADFMSVSQP 828
            G  E+L    QL   +       +K  +S  +L    PD + QFTKNLK IAD + VSQ 
Sbjct: 778  GKAEDLETPPQLDPRQNISQNGTSKMKISGELLSGKTPDFSTQFTKNLKSIADMVVVSQQ 837

Query: 829  LTSEPMVSQNSPIQPGQIKSGADMKAVVTN-----HDDKQTGTGSGPEAGPVGAHPQSAW 883
            L + P     + +   Q+K+  D+K   +N      D   +       AGP  +   ++W
Sbjct: 838  LGNPP-----ASMHSVQLKTERDVKHNPSNPNAQDEDVSVSAASVTAAAGPTRS--MNSW 890

Query: 884  GDVEHLFEGYDDQQKAAIQKERTRRLEEQKKMFSARKLCLVLDLDHTLLNSAKFHEVDPV 943
            GDVEHLFEGYDD Q+ AIQ+ER RRLEEQ KMF+++KL LVLD+DHTLLNSAKF+EV+  
Sbjct: 891  GDVEHLFEGYDDIQRVAIQRERVRRLEEQNKMFASQKLSLVLDIDHTLLNSAKFNEVESR 950

Query: 944  HDEILRKKEEQDREKPHRHLFRFPHMGMWTKLRPGIWTFLERASKLFEMHLYTMGNKLYA 1003
            H+EILRKKEEQDREKP+RHLFRF HMGMWTKLRPGIW FLE+ASKL+E+HLYTMGNKLYA
Sbjct: 951  HEEILRKKEEQDREKPYRHLFRFLHMGMWTKLRPGIWNFLEKASKLYELHLYTMGNKLYA 1010

Query: 1004 TEMAKVLDPKGVLFAGRVISRGDDGDPFDGDERVPKSKDLEGVLGMESAVVIIDDSVRVW 1063
            TEMAK+LDPKGVLF GRVIS+GDDGDP DGDERVPKSKDLEGV+GMES+VVIIDDSVRVW
Sbjct: 1011 TEMAKLLDPKGVLFNGRVISKGDDGDPLDGDERVPKSKDLEGVMGMESSVVIIDDSVRVW 1070

Query: 1064 PHNKLNLIVVERYTYFPCSRRQFGLLGPSLLEIDHDERSEDGTLASSLGVIERLHKIFFS 1123
            P +K+NLI VERY YFPCSRRQFGLLGPSLLE+D DE  E+GTLASSL VIE++H+ FFS
Sbjct: 1071 PQHKMNLIAVERYLYFPCSRRQFGLLGPSLLELDRDEVPEEGTLASSLAVIEKIHQNFFS 1130

Query: 1124 HQSLDDVDVRNILAAEQRKILAGCRIVFSRVFPVGEANPHLHPLWQTAEQFGAVCTKHID 1183
            H SLD+VDVRNILA+EQRKILAGCRIVFSR+ PVGEA PHLHPLWQTAEQFGAVCT  +D
Sbjct: 1131 HTSLDEVDVRNILASEQRKILAGCRIVFSRIIPVGEAKPHLHPLWQTAEQFGAVCTTQVD 1190

Query: 1184 DQVTHVVANSLGTDKV 1199
            + VTHVV NSLGTDKV
Sbjct: 1191 EHVTHVVTNSLGTDKV 1206
Processively dephosphorylates 'Ser-2' and/or 'Ser-5' of the heptad repeats YSPTSPS in the C-terminal domain of the largest RNA polymerase II subunit (RPB1). This promotes the activity of RNA polymerase II (By similarity). Negative regulator of stress gene transcription involved in abscisic acid (ABA) mediated signaling pathway and cold resistance.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 1EC: .EC: 3EC: .EC: 1EC: 6
>sp|Q00IB6|CPL4_ARATH RNA polymerase II C-terminal domain phosphatase-like 4 OS=Arabidopsis thaliana GN=CPL4 PE=1 SV=1 Back     alignment and function description
>sp|Q7TSG2|CTDP1_MOUSE RNA polymerase II subunit A C-terminal domain phosphatase OS=Mus musculus GN=Ctdp1 PE=1 SV=1 Back     alignment and function description
>sp|Q9Y5B0|CTDP1_HUMAN RNA polymerase II subunit A C-terminal domain phosphatase OS=Homo sapiens GN=CTDP1 PE=1 SV=3 Back     alignment and function description
>sp|Q9P376|FCP1_SCHPO RNA polymerase II subunit A C-terminal domain phosphatase OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=fcp1 PE=1 SV=1 Back     alignment and function description
>sp|Q03254|FCP1_YEAST RNA polymerase II subunit A C-terminal domain phosphatase OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=FCP1 PE=1 SV=1 Back     alignment and function description
>sp|Q8SV03|FCP1_ENCCU RNA polymerase II subunit A C-terminal domain phosphatase OS=Encephalitozoon cuniculi (strain GB-M1) GN=FCP1 PE=1 SV=1 Back     alignment and function description
>sp|Q66KM5|CTSL2_XENTR CTD small phosphatase-like protein 2 OS=Xenopus tropicalis GN=ctdspl2 PE=2 SV=1 Back     alignment and function description
>sp|Q3KQB6|CTL2B_XENLA CTD small phosphatase-like protein 2-B OS=Xenopus laevis GN=ctdspl2-b PE=2 SV=1 Back     alignment and function description
>sp|Q08BB5|CTL2A_DANRE CTD small phosphatase-like protein 2-A OS=Danio rerio GN=ctdspl2a PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query1208
3594737741238 PREDICTED: RNA polymerase II C-terminal 0.942 0.919 0.564 0.0
2240535531117 predicted protein [Populus trichocarpa] 0.860 0.930 0.575 0.0
2960881691184 unnamed protein product [Vitis vinifera] 0.870 0.888 0.535 0.0
3565237181244 PREDICTED: RNA polymerase II C-terminal 0.955 0.927 0.515 0.0
4494874511249 PREDICTED: LOW QUALITY PROTEIN: RNA poly 0.940 0.909 0.526 0.0
4494457821249 PREDICTED: RNA polymerase II C-terminal 0.940 0.909 0.526 0.0
3565671921221 PREDICTED: RNA polymerase II C-terminal 0.942 0.932 0.516 0.0
2555431741195 RNA polymerase II ctd phosphatase, putat 0.725 0.733 0.612 0.0
3575027111213 RNA polymerase II C-terminal domain phos 0.913 0.910 0.485 0.0
565477171227 putative transcription regulator CPL1 [S 0.923 0.908 0.479 0.0
>gi|359473774|ref|XP_002266931.2| PREDICTED: RNA polymerase II C-terminal domain phosphatase-like 3-like [Vitis vinifera] Back     alignment and taxonomy information
 Score = 1218 bits (3151), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 708/1255 (56%), Positives = 851/1255 (67%), Gaps = 117/1255 (9%)

Query: 1    MG-KDVEEGEISDTASVEEISEEDFKIKQEEVVKVVKETKPIKVGGGEAAARVWTMRDLY 59
            MG +DVEEGEISD+ASVEEISEEDF  KQE  V+V++E KP      +A  RVWTMRDL 
Sbjct: 10   MGIEDVEEGEISDSASVEEISEEDFN-KQE--VRVLREAKP------KADTRVWTMRDLQ 60

Query: 60   N--KYPAICRGYGPGLHNLAWAQAVQNKPLNEIFVMEAEQDDVSKRSSPASSVASVNSGA 117
            +  KY   C GY P L+NLAWAQAVQNKPLN+IFVM+ E+   S  SS  S   S ++  
Sbjct: 61   DLYKYHQACSGYTPRLYNLAWAQAVQNKPLNDIFVMDDEESKRSSSSSNTSRDDSSSA-- 118

Query: 118  AAGKDDKKVVEKVVIDDSGDEIEKEEGELEEGEIE------LDLESESNEK-------VS 164
                   K V KV+IDDSGDE++ +  ++ E E        +DL+SE + K       V+
Sbjct: 119  -------KEVAKVIIDDSGDEMDVKMDDVSEKEEGELEEGEIDLDSEPDVKDEGGVLDVN 171

Query: 165  E---QVKEEMKLINVESIREALESV--LRGDISFEGVCSKLEFTLESLREL-----VNEN 214
            E    +KE   +  V+SI+E LESV  +  + SF GVCS+L+ TL SL+++     V E+
Sbjct: 172  EPEIDLKERELVERVKSIQEDLESVTVIEAEKSFSGVCSRLQNTLGSLQKVFGEKVVGES 231

Query: 215  NVPTKDALIQLAFSAVQSVHSVFCSMNHVLKEQNKEILSRLLSLIKSHEPPLFSSNQIKE 274
            +VPTKDAL Q   +A+++++ VFCSMN   KE NK++ SRLLS ++  + P+FS   IKE
Sbjct: 232  SVPTKDALAQQLINAIRALNHVFCSMNSNQKELNKDVFSRLLSCVECGDSPIFSIQHIKE 291

Query: 275  MEAMLSSLVT-------RANDKEKDMLAMHGVNGKDSNIVTENAVNDLNFKEKVPL---P 324
            +E M+S L T        A+DK  D+    G+N    +   E++       +K+ L    
Sbjct: 292  VEVMMSFLDTPAAQSSAEASDKVNDVQVTDGMNRNILDSSVESSGRAFASAKKLSLDSIS 351

Query: 325  VDSLMQNKPLEASKPGPPGYRSRGVLLPLLDPHKVHDVDSLPSPTRETTPSVPVQRALVV 384
            V+S  QN P +A KPG    R R +  PLLD HK HD DSLPSPT +     PV ++ +V
Sbjct: 352  VESYNQNNP-DALKPGLSSSRGRFIFGPLLDLHKDHDEDSLPSPTGKAPQCFPVNKSELV 410

Query: 385  GDGMVKSWAAAAKLSHNAEVHKTPHYETDALRAFSSYQQKFGRNSFFMNSELPSPTPSEE 444
                       AK++H  +      YETDAL+A S+YQQKFG  SF    +LPSPTPSEE
Sbjct: 411  ----------TAKVAHETQDSIMHPYETDALKAVSTYQQKFGLTSFLPIDKLPSPTPSEE 460

Query: 445  SGDGDGDTGGEISSATAVDQPKPVNMPTLGQQPVSSQPMDISQPMDISSVQALTTANNSA 504
            SGD  GD  GE+SS++ +  P   N P LG   VSS P      MD S VQ  T   N++
Sbjct: 461  SGDTYGDISGEVSSSSTISAPITANAPALGHPIVSSAPQ-----MDSSIVQGPTVGRNTS 515

Query: 505  PASSGYNPVVKPNPVVKAPIKSRDPRLRFASSNA--LNLNHQPAPILHNAPKVEPVGRVM 562
              SSG  P +  + V  A  KSRDPRLR ASS+A  L+LN +P P + N+PKV+P+G ++
Sbjct: 516  LVSSG--PHLDSSVVASA--KSRDPRLRLASSDAGSLDLNERPLPAVSNSPKVDPLGEIV 571

Query: 563  SSRKQKTVEEPVLDGPALKRQRNGFENSGVVRDEKNIYGSGGWLEDTDMFEPQIMNRNLL 622
            SSRKQK+ EEP+LDGP  KRQRNG  +   VRD + +  SGGWLED++   PQ+MNRN L
Sbjct: 572  SSRKQKSAEEPLLDGPVTKRQRNGLTSPATVRDAQTVVASGGWLEDSNTVIPQMMNRNQL 631

Query: 623  VDSAESNSRKLDNGAT-SPITSGTPNVVVSGNEPAPATTPSTTVSLPALLKDIAVNPTML 681
            +++  ++ +KL++  T + I    P V V+GNE  P    STT SL +LLKDIAVNP + 
Sbjct: 632  IENTGTDPKKLESKVTVTGIGCDKPYVTVNGNEHLPVVATSTTASLQSLLKDIAVNPAVW 691

Query: 682  LNILKMGQQQKLAADAQQKSNDSSMNTMHPPIPSSI----PPVSVTCSIPSGILSKP--- 734
            +NI    +QQK        S D + NT+ PP  +SI    PP SV    PS +  KP   
Sbjct: 692  MNIFNKVEQQK--------SGDPAKNTVLPPTSNSILGVVPPASVAPLKPSALGQKPAGA 743

Query: 735  --------MDELGKVRMKPRDPRRVLHGNALQRSGSLGPE-FKTDGPSAPCTQGSKENLN 785
                    MDE GKVRMKPRDPRR+LH N+ QRSGS G E FKT               N
Sbjct: 744  LQVPQTGPMDESGKVRMKPRDPRRILHANSFQRSGSSGSEQFKT---------------N 788

Query: 786  FQKQLGAPEAKPVLSQSVLQPDITQQFTKNLKHIADFMSVSQPLTSEPMVSQNSPIQPGQ 845
             QKQ    E K V S SV  PDI+QQFTKNLK+IAD MS SQ  +  P   Q    Q  Q
Sbjct: 789  AQKQEDQTETKSVPSHSVNPPDISQQFTKNLKNIADLMSASQASSMTPTFPQILSSQSVQ 848

Query: 846  IKSG-ADMKAVVTNHDDKQTGTGSGPEAGPVGAHPQSAWGDVEHLFEGYDDQQKAAIQKE 904
            + +   D+KA V++  D+ T  GS PE+       ++ WGDVEHLF+GYDDQQKAAIQ+E
Sbjct: 849  VNTDRMDVKATVSDSGDQLTANGSKPESAAGPPQSKNTWGDVEHLFDGYDDQQKAAIQRE 908

Query: 905  RTRRLEEQKKMFSARKLCLVLDLDHTLLNSAKFHEVDPVHDEILRKKEEQDREKPHRHLF 964
            R RR+EEQKKMFSARKLCLVLDLDHTLLNSAKF EVDPVHDEILRKKEEQDREK  RHLF
Sbjct: 909  RARRIEEQKKMFSARKLCLVLDLDHTLLNSAKFVEVDPVHDEILRKKEEQDREKSQRHLF 968

Query: 965  RFPHMGMWTKLRPGIWTFLERASKLFEMHLYTMGNKLYATEMAKVLDPKGVLFAGRVISR 1024
            RFPHMGMWTKLRPGIW FLE+ASKL+E+HLYTMGNKLYATEMAKVLDPKGVLFAGRVIS+
Sbjct: 969  RFPHMGMWTKLRPGIWNFLEKASKLYELHLYTMGNKLYATEMAKVLDPKGVLFAGRVISK 1028

Query: 1025 GDDGDPFDGDERVPKSKDLEGVLGMESAVVIIDDSVRVWPHNKLNLIVVERYTYFPCSRR 1084
            GDDGD  DGDERVPKSKDLEGVLGMESAVVIIDDSVRVWPHNKLNLIVVERYTYFPCSRR
Sbjct: 1029 GDDGDVLDGDERVPKSKDLEGVLGMESAVVIIDDSVRVWPHNKLNLIVVERYTYFPCSRR 1088

Query: 1085 QFGLLGPSLLEIDHDERSEDGTLASSLGVIERLHKIFFSHQSLDDVDVRNILAAEQRKIL 1144
            QFGL GPSLLEIDHDER EDGTLASSL VIER+H+ FFS+++LD+VDVRNILA+EQRKIL
Sbjct: 1089 QFGLPGPSLLEIDHDERPEDGTLASSLAVIERIHQSFFSNRALDEVDVRNILASEQRKIL 1148

Query: 1145 AGCRIVFSRVFPVGEANPHLHPLWQTAEQFGAVCTKHIDDQVTHVVANSLGTDKV 1199
            AGCRIVFSRVFPVGEANPHLHPLWQTAE FGAVCT  ID+QVTHVVANSLGTDKV
Sbjct: 1149 AGCRIVFSRVFPVGEANPHLHPLWQTAESFGAVCTNQIDEQVTHVVANSLGTDKV 1203

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224053553|ref|XP_002297869.1| predicted protein [Populus trichocarpa] gi|222845127|gb|EEE82674.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|296088169|emb|CBI35661.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|356523718|ref|XP_003530482.1| PREDICTED: RNA polymerase II C-terminal domain phosphatase-like 3-like [Glycine max] Back     alignment and taxonomy information
>gi|449487451|ref|XP_004157633.1| PREDICTED: LOW QUALITY PROTEIN: RNA polymerase II C-terminal domain phosphatase-like 3-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449445782|ref|XP_004140651.1| PREDICTED: RNA polymerase II C-terminal domain phosphatase-like 3-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|356567192|ref|XP_003551805.1| PREDICTED: RNA polymerase II C-terminal domain phosphatase-like 3-like [Glycine max] Back     alignment and taxonomy information
>gi|255543174|ref|XP_002512650.1| RNA polymerase II ctd phosphatase, putative [Ricinus communis] gi|223548611|gb|EEF50102.1| RNA polymerase II ctd phosphatase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|357502711|ref|XP_003621644.1| RNA polymerase II C-terminal domain phosphatase-like protein [Medicago truncatula] gi|355496659|gb|AES77862.1| RNA polymerase II C-terminal domain phosphatase-like protein [Medicago truncatula] Back     alignment and taxonomy information
>gi|56547717|gb|AAV92930.1| putative transcription regulator CPL1 [Solanum lycopersicum] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query1208
TAIR|locus:20511641241 CPL3 "C-terminal domain phosph 0.381 0.371 0.639 4.7e-208
TAIR|locus:4010714056440 CPL4 "C-terminal domain phosph 0.187 0.515 0.491 2.4e-51
TAIR|locus:2045044277 AT2G04930 [Arabidopsis thalian 0.123 0.537 0.391 2.2e-22
TAIR|locus:2162565306 AT5G54210 [Arabidopsis thalian 0.141 0.558 0.364 9.7e-22
TAIR|locus:2194656221 AT1G43600 [Arabidopsis thalian 0.125 0.683 0.389 1.2e-21
TAIR|locus:2012943342 AT1G20320 [Arabidopsis thalian 0.128 0.453 0.396 5.4e-21
TAIR|locus:2194666255 AT1G43610 [Arabidopsis thalian 0.125 0.596 0.392 6.9e-21
TAIR|locus:2090467296 AT3G17550 [Arabidopsis thalian 0.131 0.537 0.375 8.8e-21
TAIR|locus:4515103095307 AT3G19595 [Arabidopsis thalian 0.127 0.501 0.355 3.9e-20
WB|WBGene00009479 659 fcp-1 [Caenorhabditis elegans 0.191 0.350 0.319 4.8e-20
TAIR|locus:2051164 CPL3 "C-terminal domain phosphatase-like 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1528 (542.9 bits), Expect = 4.7e-208, Sum P(3) = 4.7e-208
 Identities = 309/483 (63%), Positives = 363/483 (75%)

Query:   734 PMDELGKVRMKPRDPRRVLHGNALQRS-GSLGPEFKTDGPSAPCT---QGSKENLNFQKQ 789
             P  E G +RMKPRDPRR+LHG+ LQR+  S+  + K + PS   T   +G  E+L    Q
Sbjct:   729 PAAESGSIRMKPRDPRRILHGSTLQRTDSSMEKQTKVNDPSTLGTLTMKGKAEDLETPPQ 788

Query:   790 LGAPE-------AKPVLSQSVLQ---PDITQQFTKNLKHIADFMSVSQPLTSEPMVSQNS 839
             L   +       +K  +S  +L    PD + QFTKNLK IAD + VSQ L + P  S +S
Sbjct:   789 LDPRQNISQNGTSKMKISGELLSGKTPDFSTQFTKNLKSIADMVVVSQQLGNPP-ASMHS 847

Query:   840 PIQPGQIKSGADMKAVVTNHD--DKQTGTGSGPEAGPVG-AHPQSAWGDVEHLFEGYDDQ 896
                  Q+K+  D+K   +N +  D+     +       G     ++WGDVEHLFEGYDD 
Sbjct:   848 V----QLKTERDVKHNPSNPNAQDEDVSVSAASVTAAAGPTRSMNSWGDVEHLFEGYDDI 903

Query:   897 QKAAIQKERTRRLEEQKKMFSARKXXXXXXXXXXXXNSAKFHEVDPVHDEILRKKEEQDR 956
             Q+ AIQ+ER RRLEEQ KMF+++K            NSAKF+EV+  H+EILRKKEEQDR
Sbjct:   904 QRVAIQRERVRRLEEQNKMFASQKLSLVLDIDHTLLNSAKFNEVESRHEEILRKKEEQDR 963

Query:   957 EKPHRHLFRFPHMGMWTKLRPGIWTFLERASKLFEMHLYTMGNKLYATEMAKVLDPKGVL 1016
             EKP+RHLFRF HMGMWTKLRPGIW FLE+ASKL+E+HLYTMGNKLYATEMAK+LDPKGVL
Sbjct:   964 EKPYRHLFRFLHMGMWTKLRPGIWNFLEKASKLYELHLYTMGNKLYATEMAKLLDPKGVL 1023

Query:  1017 FAGRVISRGDDGDPFDGDERVPKSKDLEGVLGMESAVVIIDDSVRVWPHNKLNLIVVERY 1076
             F GRVIS+GDDGDP DGDERVPKSKDLEGV+GMES+VVIIDDSVRVWP +K+NLI VERY
Sbjct:  1024 FNGRVISKGDDGDPLDGDERVPKSKDLEGVMGMESSVVIIDDSVRVWPQHKMNLIAVERY 1083

Query:  1077 TYFPCSRRQFGLLGPSLLEIDHDERSEDGTLASSLGVIERLHKIFFSHQSLDDVDVRNIL 1136
              YFPCSRRQFGLLGPSLLE+D DE  E+GTLASSL VIE++H+ FFSH SLD+VDVRNIL
Sbjct:  1084 LYFPCSRRQFGLLGPSLLELDRDEVPEEGTLASSLAVIEKIHQNFFSHTSLDEVDVRNIL 1143

Query:  1137 AAEQRKILAGCRIVFSRVFPVGEANPHLHPLWQTAEQFGAVCTKHIDDQVTHVVANSLGT 1196
             A+EQRKILAGCRIVFSR+ PVGEA PHLHPLWQTAEQFGAVCT  +D+ VTHVV NSLGT
Sbjct:  1144 ASEQRKILAGCRIVFSRIIPVGEAKPHLHPLWQTAEQFGAVCTTQVDEHVTHVVTNSLGT 1203

Query:  1197 DKV 1199
             DKV
Sbjct:  1204 DKV 1206
GO:0004721 "phosphoprotein phosphatase activity" evidence=IEA
GO:0005622 "intracellular" evidence=IEA
GO:0005634 "nucleus" evidence=ISM;IEA;IDA
GO:0008420 "CTD phosphatase activity" evidence=ISS
GO:0008022 "protein C-terminus binding" evidence=IPI
GO:0009651 "response to salt stress" evidence=IEP
GO:0009788 "negative regulation of abscisic acid mediated signaling pathway" evidence=IMP
GO:0000394 "RNA splicing, via endonucleolytic cleavage and ligation" evidence=RCA
GO:0006366 "transcription from RNA polymerase II promoter" evidence=RCA
TAIR|locus:4010714056 CPL4 "C-terminal domain phosphatase-like 4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2045044 AT2G04930 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2162565 AT5G54210 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2194656 AT1G43600 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2012943 AT1G20320 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2194666 AT1G43610 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2090467 AT3G17550 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:4515103095 AT3G19595 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
WB|WBGene00009479 fcp-1 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q8LL04CPL3_ARATH3, ., 1, ., 3, ., 1, 60.48760.87740.8541yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.1.3.160.914
3rd Layer3.1.30.921

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
estExt_Genewise1_v1.C_LG_I7873
hypothetical protein (1117 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1208
TIGR02250156 TIGR02250, FCP1_euk, FCP1-like phosphatase, phosph 8e-63
smart00577148 smart00577, CPDc, catalytic domain of ctd-like pho 9e-48
pfam03031153 pfam03031, NIF, NLI interacting factor-like phosph 2e-24
TIGR02251162 TIGR02251, HIF-SF_euk, Dullard-like phosphatase do 2e-09
COG5190390 COG5190, FCP1, TFIIF-interacting CTD phosphatases, 1e-07
smart0029278 smart00292, BRCT, breast cancer carboxy-terminal d 0.002
>gnl|CDD|131304 TIGR02250, FCP1_euk, FCP1-like phosphatase, phosphatase domain Back     alignment and domain information 
 Score =  210 bits (536), Expect = 8e-63
 Identities = 72/168 (42%), Positives = 94/168 (55%), Gaps = 15/168 (8%)

Query: 915  MFSARKLCLVLDLDHTLLNSAKFHEVDPVHDEILRKKEEQDREKPHRHLFRFPHMGMW-- 972
            +   +KL LVLDLD TL+++ K   +           EE + E   R L +F    MW  
Sbjct: 1    LLREKKLHLVLDLDQTLIHTTKDPTLSEWEKY---DIEEPNSE-TRRDLRKFNLGTMWYL 56

Query: 973  TKLRPGIWTFLERASKLFEMHLYTMGNKLYATEMAKVLDPKGVLFAGRVISRGDDGDPFD 1032
            TKLRP +  FL+ ASKL+EMH+YTMG + YA  +AK++DP G  F  R+ISR + G    
Sbjct: 57   TKLRPFLHEFLKEASKLYEMHVYTMGTRAYAQAIAKLIDPDGKYFGDRIISRDESGS--- 113

Query: 1033 GDERVPKSKDLEGVLG-MESAVVIIDDSVRVWPHNKLNLIVVERYTYF 1079
                 P +K L  +    ES VVIIDD   VWP +K NLI +E Y YF
Sbjct: 114  -----PHTKSLLRLFPADESMVVIIDDREDVWPWHKRNLIQIEPYNYF 156

This model represents the phosphatase domain of the humanRNA polymerase II subunit A C-terminal domain phosphatase (FCP1, ) and closely related phosphatases from eukaryotes including plants, fungi and slime mold. This domain is a member of the haloacid dehalogenase (HAD) superfamily by virtue of a conserved set of three catalytic motifs and a conserved fold as predicted by PSIPRED. The third motif in this family is distinctive (hhhhDDppphW). This domain is classified as a "Class III" HAD, since there is no large "cap" domain found between motifs 1 and 2 or motifs 2 and 3.This domain is related to domains found in the human NLI interacting factor-like phosphatases, and together both are detected by the pfam03031. Length = 156
>gnl|CDD|214729 smart00577, CPDc, catalytic domain of ctd-like phosphatases Back     alignment and domain information
>gnl|CDD|217328 pfam03031, NIF, NLI interacting factor-like phosphatase Back     alignment and domain information
>gnl|CDD|233801 TIGR02251, HIF-SF_euk, Dullard-like phosphatase domain Back     alignment and domain information
>gnl|CDD|227517 COG5190, FCP1, TFIIF-interacting CTD phosphatases, including NLI-interacting factor [Transcription] Back     alignment and domain information
>gnl|CDD|214602 smart00292, BRCT, breast cancer carboxy-terminal domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 1208
KOG0323 635 consensus TFIIF-interacting CTD phosphatases, incl 100.0
TIGR02250156 FCP1_euk FCP1-like phosphatase, phosphatase domain 100.0
KOG1605262 consensus TFIIF-interacting CTD phosphatase, inclu 99.97
TIGR02251162 HIF-SF_euk Dullard-like phosphatase domain. This d 99.96
PF03031159 NIF: NLI interacting factor-like phosphatase; Inte 99.96
TIGR02245195 HAD_IIID1 HAD-superfamily subfamily IIID hydrolase 99.93
KOG2832393 consensus TFIIF-interacting CTD phosphatase, inclu 99.86
smart00577148 CPDc catalytic domain of ctd-like phosphatases. 99.85
COG5190390 FCP1 TFIIF-interacting CTD phosphatases, including 99.77
COG5190390 FCP1 TFIIF-interacting CTD phosphatases, including 99.51
KOG0323635 consensus TFIIF-interacting CTD phosphatases, incl 99.06
PF1273863 PTCB-BRCT: twin BRCT domain; PDB: 3PA6_A 3KTF_C 2W 98.57
PF0053378 BRCT: BRCA1 C Terminus (BRCT) domain; InterPro: IP 98.01
cd0002772 BRCT Breast Cancer Suppressor Protein (BRCA1), car 97.78
smart0029280 BRCT breast cancer carboxy-terminal domain. 97.74
cd01427139 HAD_like Haloacid dehalogenase-like hydrolases. Th 97.34
KOG3226 508 consensus DNA repair protein [Replication, recombi 97.11
TIGR01684301 viral_ppase viral phosphatase. These proteins also 97.05
PHA03398303 viral phosphatase superfamily protein; Provisional 97.03
TIGR01681128 HAD-SF-IIIC HAD-superfamily phosphatase, subfamily 96.74
TIGR01662132 HAD-SF-IIIA HAD-superfamily hydrolase, subfamily I 96.63
TIGR01685174 MDP-1 magnesium-dependent phosphatase-1. This mode 96.54
PRK14350669 ligA NAD-dependent DNA ligase LigA; Provisional 96.22
PRK07956665 ligA NAD-dependent DNA ligase LigA; Validated 96.19
PRK06063313 DNA polymerase III subunit epsilon; Provisional 96.13
TIGR01261161 hisB_Nterm histidinol-phosphatase. This model desc 96.02
TIGR01664166 DNA-3'-Pase DNA 3'-phosphatase. The central phosph 95.97
PRK14351689 ligA NAD-dependent DNA ligase LigA; Provisional 95.9
PF05152297 DUF705: Protein of unknown function (DUF705); Inte 95.89
PRK06195309 DNA polymerase III subunit epsilon; Validated 95.85
PHA02530300 pseT polynucleotide kinase; Provisional 95.83
TIGR01672237 AphA HAD superfamily (subfamily IIIB) phosphatase, 95.79
COG4996164 Predicted phosphatase [General function prediction 95.64
TIGR01686320 FkbH FkbH-like domain. The C-terminal portion of t 95.6
PRK08942181 D,D-heptose 1,7-bisphosphate phosphatase; Validate 95.38
TIGR01533266 lipo_e_P4 5'-nucleotidase, lipoprotein e(P4) famil 95.37
TIGR00213176 GmhB_yaeD D,D-heptose 1,7-bisphosphate phosphatase 95.35
PLN03122 815 Poly [ADP-ribose] polymerase; Provisional 95.07
TIGR00575652 dnlj DNA ligase, NAD-dependent. The member of this 94.88
PF12689169 Acid_PPase: Acid Phosphatase; InterPro: IPR010036 94.84
COG5275276 BRCT domain type II [General function prediction o 94.58
TIGR01656147 Histidinol-ppas histidinol-phosphate phosphatase f 94.41
PRK11009237 aphA acid phosphatase/phosphotransferase; Provisio 94.1
COG0272667 Lig NAD-dependent DNA ligase (contains BRCT domain 93.91
PRK05446354 imidazole glycerol-phosphate dehydratase/histidino 93.38
PLN03123 981 poly [ADP-ribose] polymerase; Provisional 93.27
TIGR02253221 CTE7 HAD superfamily (subfamily IA) hydrolase, TIG 93.2
PRK08238 479 hypothetical protein; Validated 92.58
PF13419176 HAD_2: Haloacid dehalogenase-like hydrolase; PDB: 92.25
TIGR01689126 EcbF-BcbF capsule biosynthesis phosphatase. Due to 91.23
PF08645159 PNK3P: Polynucleotide kinase 3 phosphatase; InterP 91.18
TIGR01663526 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase 91.1
TIGR01449213 PGP_bact 2-phosphoglycolate phosphatase, prokaryot 91.05
TIGR01509183 HAD-SF-IA-v3 haloacid dehalogenase superfamily, su 91.01
TIGR01668170 YqeG_hyp_ppase HAD superfamily (subfamily IIIA) ph 90.99
TIGR02254224 YjjG/YfnB HAD superfamily (subfamily IA) hydrolase 90.83
PLN02770248 haloacid dehalogenase-like hydrolase family protei 90.0
PRK06769173 hypothetical protein; Validated 89.46
PRK13222226 phosphoglycolate phosphatase; Provisional 89.26
TIGR01454205 AHBA_synth_RP 3-amino-5-hydroxybenoic acid synthes 89.22
TIGR01428198 HAD_type_II 2-haloalkanoic acid dehalogenase, type 89.22
PLN03243260 haloacid dehalogenase-like hydrolase; Provisional 89.16
TIGR01993184 Pyr-5-nucltdase pyrimidine 5'-nucleotidase. These 88.73
TIGR01422253 phosphonatase phosphonoacetaldehyde hydrolase. Thi 88.43
PF06941191 NT5C: 5' nucleotidase, deoxy (Pyrimidine), cytosol 88.28
PRK10563221 6-phosphogluconate phosphatase; Provisional 87.83
PRK13288214 pyrophosphatase PpaX; Provisional 87.56
PRK09449224 dUMP phosphatase; Provisional 87.46
TIGR01489188 DKMTPPase-SF 2,3-diketo-5-methylthio-1-phosphopent 87.4
TIGR01459242 HAD-SF-IIA-hyp4 HAD-superfamily class IIA hydrolas 87.32
PRK00192273 mannosyl-3-phosphoglycerate phosphatase; Reviewed 86.63
TIGR00338219 serB phosphoserine phosphatase SerB. Phosphoserine 86.39
TIGR03333214 salvage_mtnX 2-hydroxy-3-keto-5-methylthiopentenyl 85.95
PF13344101 Hydrolase_6: Haloacid dehalogenase-like hydrolase; 85.43
PRK10826222 2-deoxyglucose-6-phosphatase; Provisional 85.24
PF08282254 Hydrolase_3: haloacid dehalogenase-like hydrolase; 84.41
COG1011229 Predicted hydrolase (HAD superfamily) [General fun 83.94
PRK11587218 putative phosphatase; Provisional 83.8
COG0561264 Cof Predicted hydrolases of the HAD superfamily [G 83.51
PRK13226229 phosphoglycolate phosphatase; Provisional 83.45
PRK14988224 GMP/IMP nucleotidase; Provisional 83.15
TIGR01491201 HAD-SF-IB-PSPlk HAD-superfamily, subfamily-IB PSPa 82.57
TIGR01670154 YrbI-phosphatas 3-deoxy-D-manno-octulosonate 8-pho 81.94
PRK13223272 phosphoglycolate phosphatase; Provisional 81.8
PLN02575381 haloacid dehalogenase-like hydrolase 81.55
TIGR02463221 MPGP_rel mannosyl-3-phosphoglycerate phosphatase-r 81.53
TIGR01456321 CECR5 HAD-superfamily class IIA hydrolase, TIGR014 81.47
PRK10725188 fructose-1-P/6-phosphogluconate phosphatase; Provi 81.27
TIGR01549154 HAD-SF-IA-v1 haloacid dehalogenase superfamily, su 80.74
TIGR02009185 PGMB-YQAB-SF beta-phosphoglucomutase family hydrol 80.31
>KOG0323 consensus TFIIF-interacting CTD phosphatases, including NLI-interacting factor [Transcription] Back     alignment and domain information 
Probab=100.00  E-value=2.3e-46  Score=436.25  Aligned_cols=310  Identities=37%  Similarity=0.554  Sum_probs=248.3

Q ss_pred             cccccchhccCCchHHHHHHhHHHHhhHHHHHhhhcCCCeEEEEeCCCceeecccCCCCCCchhhhhhhccccccCCCcc
Q 000959          882 AWGDVEHLFEGYDDQQKAAIQKERTRRLEEQKKMFSARKLCLVLDLDHTLLNSAKFHEVDPVHDEILRKKEEQDREKPHR  961 (1208)
Q Consensus       882 ~~~~f~~L~~Gy~~~q~a~I~ke~arrLe~q~rLLs~rKLTLVLDLDETLIHSt~~~evdP~~~Eil~~~ee~D~~~P~~  961 (1208)
                      ..+.|.++..+....+...   ...+++..+..++...+|+||+|||+||+|+.....+....  .+... +......+.
T Consensus       111 ~~~~~~~~~~~~~l~~~~~---~~~~~~~~~~~~~~~~~L~lv~Dld~tllh~~~~~~l~e~~--~~l~~-~~~~~~sn~  184 (635)
T KOG0323|consen  111 QGRSFDYLVKGLQLSNEMV---AFTKTLTTQFSSLNRKKLHLVLDLDHTLLHTILKSDLSETE--KYLKE-EAESVESNK  184 (635)
T ss_pred             hccchhcccchhhhhhhhh---hhhhHHHHHHHHHhhhcceeehhhhhHHHHhhccchhhhhh--hhccc-ccccccccc
Confidence            3455677777766555533   36677777788888889999999999999998654333221  11111 101000123


Q ss_pred             eeeeec----cceEEEEeccCHHHHHHHhhcccEEEEEcCCcHHHHHHHHHHhcCCCceeeeeEEecCCCCCCCCCCCCC
Q 000959          962 HLFRFP----HMGMWTKLRPGIWTFLERASKLFEMHLYTMGNKLYATEMAKVLDPKGVLFAGRVISRGDDGDPFDGDERV 1037 (1208)
Q Consensus       962 ~lFrlp----~~~~yVKLRPGLdEFLeeLSklYEIVIYTAGtreYAd~VLdiLDP~gkLFs~RIiSRDDc~~~fdG~er~ 1037 (1208)
                      .+|++.    ...||||+|||+.+||++++++|||||||||++.||..|+++|||+|.||++|||+|+++..        
T Consensus       185 dl~~~~~~~~~~~~~vKlRP~~~efL~~~sklfemhVyTmg~R~YA~~i~~liDP~~~lF~dRIisrde~~~--------  256 (635)
T KOG0323|consen  185 DLFRFNPLGHDTEYLVKLRPFVHEFLKEANKLFEMHVYTMGTRDYALEIAKLIDPEGKYFGDRIISRDESPF--------  256 (635)
T ss_pred             cceeecccCCCceEEEEeCccHHHHHHHHHhhceeEEEeccchHHHHHHHHHhCCCCccccceEEEecCCCc--------
Confidence            344443    25689999999999999999999999999999999999999999999999999999997432        


Q ss_pred             CccccCCCccCCC-CcEEEEcCCCcccccCCCCeEEeccccccCccccccC-----------------------------
Q 000959         1038 PKSKDLEGVLGME-SAVVIIDDSVRVWPHNKLNLIVVERYTYFPCSRRQFG----------------------------- 1087 (1208)
Q Consensus      1038 ~yvKDLsrVLGrD-srVVIIDDrpdVW~~qpdNlI~IkpY~YF~~s~rQfG----------------------------- 1087 (1208)
                      ...+||..++.++ ++|||||||.+||.+++.|+|.|.+|.||.+.++.+.                             
T Consensus       257 ~kt~dL~~~~p~g~smvvIIDDr~dVW~~~~~nLI~i~~y~yF~~~gd~nap~~~~~~~~~~~~~~~~~~k~~~~s~~~~  336 (635)
T KOG0323|consen  257 FKTLDLVLLFPCGDSMVVIIDDRSDVWPDHKRNLIQIAPYPYFSGQGDINAPPPLHVLRNVACSVRGAFFKEFDPSLKSR  336 (635)
T ss_pred             ccccccccCCCCCCccEEEEeCccccccCCCcceEEeeeeecccCcccccCCcccccccchhcccccccccccCcccccc
Confidence            4578888777776 8999999999999999889999999999998664432                             


Q ss_pred             --------------------------------------------CCCCCcccccccCCccchhhhHHHHHHHHHHHhhhc
Q 000959         1088 --------------------------------------------LLGPSLLEIDHDERSEDGTLASSLGVIERLHKIFFS 1123 (1208)
Q Consensus      1088 --------------------------------------------lpgPSLlEid~DEdpeDg~L~sLL~~LerIHq~FF~ 1123 (1208)
                                                                  ....++.+...|+.+.|++|++++++|+.||..||.
T Consensus       337 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~s~~~~~~de~~~D~~L~~~~kvl~~vH~~ff~  416 (635)
T KOG0323|consen  337 ISEVRYEDDDESNPTSYSVELSANPGPLKQDGMDEFVPEENAPEARSGSYREKKSDESDEDGELANLLKVLKPVHKGFFA  416 (635)
T ss_pred             cccccccccccccCcccccccccccCcccccccccccccccchhhcccccccccccccccchhHHHHhhhhcccchhhhh
Confidence                                                        123344555677888899999999999999999999


Q ss_pred             CC-----CCCCCCHHHHHHHHHHhhhcCceEEeeeeccCCCCCCCCchHHHHHHhcCCEEecccCCCccEEEeCCCCcHH
Q 000959         1124 HQ-----SLDDVDVRNILAAEQRKILAGCRIVFSRVFPVGEANPHLHPLWQTAEQFGAVCTKHIDDQVTHVVANSLGTDK 1198 (1208)
Q Consensus      1124 ~~-----dL~~~DVR~ILreiRrkVL~GC~IVFSGVfPlg~anPe~h~LWrLAEsFGAtct~sId~~VTHVVAa~~GTeK 1198 (1208)
                      ..     .....|||.+|+++|.++|+||.++|||++|.+... ....+...+.+|||+..++++..+||+|+.+.||.|
T Consensus       417 ~~~~~~e~~~~~Dvr~~i~~~~~~v~~~~~~vfSg~~P~~~~~-~~s~~~~~~~~~g~vs~~~~~~~~th~i~~~~gt~k  495 (635)
T KOG0323|consen  417 KYDEVEETLESPDVRLLIPELRTKVLKGSQIVFSGLHPTGSTD-ESADILGVAQQLGAVSAPDVSDKTTHLIAANAGTKK  495 (635)
T ss_pred             ccccccccccCCChhhhhhhhhhHHhhccceeecccccCcCCc-chhhhhhhhhcccceecccccchhhhHHhhccCcce
Confidence            75     345789999999999999999999999999998642 335666679999999999999999999999999999


Q ss_pred             HHHHHHhc
Q 000959         1199 VLLVVFSL 1206 (1208)
Q Consensus      1199 Vr~A~~~g 1206 (1208)
                      +.+|...+
T Consensus       496 ~~~a~~~~  503 (635)
T KOG0323|consen  496 VYKAVVSG  503 (635)
T ss_pred             eecccccc
Confidence            99987654

>TIGR02250 FCP1_euk FCP1-like phosphatase, phosphatase domain Back     alignment and domain information
>KOG1605 consensus TFIIF-interacting CTD phosphatase, including NLI-interacting factor (involved in RNA polymerase II regulation) [Transcription] Back     alignment and domain information
>TIGR02251 HIF-SF_euk Dullard-like phosphatase domain Back     alignment and domain information
>PF03031 NIF: NLI interacting factor-like phosphatase; InterPro: IPR004274 The function of this domain is unclear Back     alignment and domain information
>TIGR02245 HAD_IIID1 HAD-superfamily subfamily IIID hydrolase, TIGR02245 Back     alignment and domain information
>KOG2832 consensus TFIIF-interacting CTD phosphatase, including NLI-interacting factor (involved in RNA polymerase II regulation) [Transcription] Back     alignment and domain information
>smart00577 CPDc catalytic domain of ctd-like phosphatases Back     alignment and domain information
>COG5190 FCP1 TFIIF-interacting CTD phosphatases, including NLI-interacting factor [Transcription] Back     alignment and domain information
>COG5190 FCP1 TFIIF-interacting CTD phosphatases, including NLI-interacting factor [Transcription] Back     alignment and domain information
>KOG0323 consensus TFIIF-interacting CTD phosphatases, including NLI-interacting factor [Transcription] Back     alignment and domain information
>PF12738 PTCB-BRCT: twin BRCT domain; PDB: 3PA6_A 3KTF_C 2WT8_C 3EF1_A 3EF0_A Back     alignment and domain information
>PF00533 BRCT: BRCA1 C Terminus (BRCT) domain; InterPro: IPR001357 The BRCT domain (after the C_terminal domain of a breast cancer susceptibility protein) is found predominantly in proteins involved in cell cycle checkpoint functions responsive to DNA damage [], for example as found in the breast cancer DNA-repair protein BRCA1 Back     alignment and domain information
>cd00027 BRCT Breast Cancer Suppressor Protein (BRCA1), carboxy-terminal domain Back     alignment and domain information
>smart00292 BRCT breast cancer carboxy-terminal domain Back     alignment and domain information
>cd01427 HAD_like Haloacid dehalogenase-like hydrolases Back     alignment and domain information
>KOG3226 consensus DNA repair protein [Replication, recombination and repair] Back     alignment and domain information
>TIGR01684 viral_ppase viral phosphatase Back     alignment and domain information
>PHA03398 viral phosphatase superfamily protein; Provisional Back     alignment and domain information
>TIGR01681 HAD-SF-IIIC HAD-superfamily phosphatase, subfamily IIIC Back     alignment and domain information
>TIGR01662 HAD-SF-IIIA HAD-superfamily hydrolase, subfamily IIIA Back     alignment and domain information
>TIGR01685 MDP-1 magnesium-dependent phosphatase-1 Back     alignment and domain information
>PRK14350 ligA NAD-dependent DNA ligase LigA; Provisional Back     alignment and domain information
>PRK07956 ligA NAD-dependent DNA ligase LigA; Validated Back     alignment and domain information
>PRK06063 DNA polymerase III subunit epsilon; Provisional Back     alignment and domain information
>TIGR01261 hisB_Nterm histidinol-phosphatase Back     alignment and domain information
>TIGR01664 DNA-3'-Pase DNA 3'-phosphatase Back     alignment and domain information
>PRK14351 ligA NAD-dependent DNA ligase LigA; Provisional Back     alignment and domain information
>PF05152 DUF705: Protein of unknown function (DUF705); InterPro: IPR007827 This family contains uncharacterised baculoviral proteins Back     alignment and domain information
>PRK06195 DNA polymerase III subunit epsilon; Validated Back     alignment and domain information
>PHA02530 pseT polynucleotide kinase; Provisional Back     alignment and domain information
>TIGR01672 AphA HAD superfamily (subfamily IIIB) phosphatase, TIGR01672 Back     alignment and domain information
>COG4996 Predicted phosphatase [General function prediction only] Back     alignment and domain information
>TIGR01686 FkbH FkbH-like domain Back     alignment and domain information
>PRK08942 D,D-heptose 1,7-bisphosphate phosphatase; Validated Back     alignment and domain information
>TIGR01533 lipo_e_P4 5'-nucleotidase, lipoprotein e(P4) family Back     alignment and domain information
>TIGR00213 GmhB_yaeD D,D-heptose 1,7-bisphosphate phosphatase Back     alignment and domain information
>PLN03122 Poly [ADP-ribose] polymerase; Provisional Back     alignment and domain information
>TIGR00575 dnlj DNA ligase, NAD-dependent Back     alignment and domain information
>PF12689 Acid_PPase: Acid Phosphatase; InterPro: IPR010036 This entry represents two closely related clades of sequences from eukaryotes and archaea Back     alignment and domain information
>COG5275 BRCT domain type II [General function prediction only] Back     alignment and domain information
>TIGR01656 Histidinol-ppas histidinol-phosphate phosphatase family domain Back     alignment and domain information
>PRK11009 aphA acid phosphatase/phosphotransferase; Provisional Back     alignment and domain information
>COG0272 Lig NAD-dependent DNA ligase (contains BRCT domain type II) [DNA replication, recombination, and repair] Back     alignment and domain information
>PRK05446 imidazole glycerol-phosphate dehydratase/histidinol phosphatase; Provisional Back     alignment and domain information
>PLN03123 poly [ADP-ribose] polymerase; Provisional Back     alignment and domain information
>TIGR02253 CTE7 HAD superfamily (subfamily IA) hydrolase, TIGR02253 Back     alignment and domain information
>PRK08238 hypothetical protein; Validated Back     alignment and domain information
>PF13419 HAD_2: Haloacid dehalogenase-like hydrolase; PDB: 2FI1_A 2I6X_A 3SD7_A 4F71_A 4DFD_B 4F72_B 4DCC_A 3DDH_A 3KZX_A 2B0C_A Back     alignment and domain information
>TIGR01689 EcbF-BcbF capsule biosynthesis phosphatase Back     alignment and domain information
>PF08645 PNK3P: Polynucleotide kinase 3 phosphatase; InterPro: IPR013954 Polynucleotide kinase 3 phosphatases play a role in the repair of single breaks in DNA induced by DNA-damaging agents such as gamma radiation and camptothecin [] Back     alignment and domain information
>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase Back     alignment and domain information
>TIGR01449 PGP_bact 2-phosphoglycolate phosphatase, prokaryotic Back     alignment and domain information
>TIGR01509 HAD-SF-IA-v3 haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED Back     alignment and domain information
>TIGR01668 YqeG_hyp_ppase HAD superfamily (subfamily IIIA) phosphatase, TIGR01668 Back     alignment and domain information
>TIGR02254 YjjG/YfnB HAD superfamily (subfamily IA) hydrolase, TIGR02254 Back     alignment and domain information
>PLN02770 haloacid dehalogenase-like hydrolase family protein Back     alignment and domain information
>PRK06769 hypothetical protein; Validated Back     alignment and domain information
>PRK13222 phosphoglycolate phosphatase; Provisional Back     alignment and domain information
>TIGR01454 AHBA_synth_RP 3-amino-5-hydroxybenoic acid synthesis related protein Back     alignment and domain information
>TIGR01428 HAD_type_II 2-haloalkanoic acid dehalogenase, type II Back     alignment and domain information
>PLN03243 haloacid dehalogenase-like hydrolase; Provisional Back     alignment and domain information
>TIGR01993 Pyr-5-nucltdase pyrimidine 5'-nucleotidase Back     alignment and domain information
>TIGR01422 phosphonatase phosphonoacetaldehyde hydrolase Back     alignment and domain information
>PF06941 NT5C: 5' nucleotidase, deoxy (Pyrimidine), cytosolic type C protein (NT5C); InterPro: IPR010708 This family consists of several 5' nucleotidase, deoxy (Pyrimidine), and cytosolic type C (NT5C) proteins Back     alignment and domain information
>PRK10563 6-phosphogluconate phosphatase; Provisional Back     alignment and domain information
>PRK13288 pyrophosphatase PpaX; Provisional Back     alignment and domain information
>PRK09449 dUMP phosphatase; Provisional Back     alignment and domain information
>TIGR01489 DKMTPPase-SF 2,3-diketo-5-methylthio-1-phosphopentane phosphatase Back     alignment and domain information
>TIGR01459 HAD-SF-IIA-hyp4 HAD-superfamily class IIA hydrolase, TIGR01459 Back     alignment and domain information
>PRK00192 mannosyl-3-phosphoglycerate phosphatase; Reviewed Back     alignment and domain information
>TIGR00338 serB phosphoserine phosphatase SerB Back     alignment and domain information
>TIGR03333 salvage_mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase Back     alignment and domain information
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A Back     alignment and domain information
>PRK10826 2-deoxyglucose-6-phosphatase; Provisional Back     alignment and domain information
>PF08282 Hydrolase_3: haloacid dehalogenase-like hydrolase; InterPro: IPR013200 The Haloacid Dehydrogenase (HAD) superfamily includes phosphatases, phosphonatases, P-type ATPases, beta-phosphoglucomutases, phosphomannomutases, and dehalogenases, which are involved in a variety of cellular processes ranging from amino acid biosynthesis to detoxification [] Back     alignment and domain information
>COG1011 Predicted hydrolase (HAD superfamily) [General function prediction only] Back     alignment and domain information
>PRK11587 putative phosphatase; Provisional Back     alignment and domain information
>COG0561 Cof Predicted hydrolases of the HAD superfamily [General function prediction only] Back     alignment and domain information
>PRK13226 phosphoglycolate phosphatase; Provisional Back     alignment and domain information
>PRK14988 GMP/IMP nucleotidase; Provisional Back     alignment and domain information
>TIGR01491 HAD-SF-IB-PSPlk HAD-superfamily, subfamily-IB PSPase-like hydrolase, archaeal Back     alignment and domain information
>TIGR01670 YrbI-phosphatas 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family Back     alignment and domain information
>PRK13223 phosphoglycolate phosphatase; Provisional Back     alignment and domain information
>PLN02575 haloacid dehalogenase-like hydrolase Back     alignment and domain information
>TIGR02463 MPGP_rel mannosyl-3-phosphoglycerate phosphatase-related protein Back     alignment and domain information
>TIGR01456 CECR5 HAD-superfamily class IIA hydrolase, TIGR01456, CECR5 Back     alignment and domain information
>PRK10725 fructose-1-P/6-phosphogluconate phosphatase; Provisional Back     alignment and domain information
>TIGR01549 HAD-SF-IA-v1 haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E Back     alignment and domain information
>TIGR02009 PGMB-YQAB-SF beta-phosphoglucomutase family hydrolase Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1208
3ef0_A372 The Structure Of Fcp1, An Essential Rna Polymerase 3e-20
3ef1_A 442 The Structure Of Fcp1, An Essential Rna Polymerase 9e-17
>pdb|3EF0|A Chain A, The Structure Of Fcp1, An Essential Rna Polymerase Ii Ctd Phosphatase Length = 372 Back     alignment and structure 
Iteration: 1

 Score = 97.8 bits (242), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 85/285 (29%), Positives = 129/285 (45%), Gaps = 77/285 (27%)
Query: 972  WTKLRPGIWTFLERASKLFEMHLYTMGNKLYATEMAKVLDPKGVLFAGRVISRGDDGDPF 1031
            + K RPG+  FL++ S+L+E+H+YTMG K YA E+AK++DP G LF  RV+SR D G   
Sbjct: 73   YIKFRPGLAQFLQKISELYELHIYTMGTKAYAKEVAKIIDPTGKLFQDRVLSRDDSGS-- 130
Query: 1032 DGDERVPKSKDLEGVLGME-SAVVIIDDSVRVWPHNKLNLIVVERYTYF----------- 1079
                     K L  +   + S VV+IDD   VW  N  NLI V  Y +F           
Sbjct: 131  ------LAQKSLRRLFPCDTSMVVVIDDRGDVWDWNP-NLIKVVPYEFFVGIGDINSNFL 183
Query: 1080 -------------------------PCSRRQFGLL------GPS---LLEIDHD-ERSED 1104
                                     P +++Q  LL       PS   L   DH+ ER E 
Sbjct: 184  SGNREALEEQNKERVTALELQKSERPLAKQQNALLEDEGKPTPSHTLLHNRDHELERLEK 243
Query: 1105 GTLASSLGVIERLHKIFFSHQSLDDVDVRN----------ILAAEQRKILAGCRIVFSRV 1154
                    V++ +H +++  +  +D+  R+          I+   ++K+L GCR++FS V
Sbjct: 244  --------VLKDIHAVYYEEE--NDISSRSGNHKHANVGLIIPKMKQKVLKGCRLLFSGV 293
Query: 1155 FPVGEANPHLHPLWQTAEQFGAVCTKHIDDQVTHVVANSLGTDKV 1199
             P+G  +     + + A  FGA          TH++A  + T+KV
Sbjct: 294  IPLG-VDVLSSDIAKWAMSFGAEVVLDFSVPPTHLIAAKIRTEKV 337
>pdb|3EF1|A Chain A, The Structure Of Fcp1, An Essential Rna Polymerase Ii Ctd Phosphatase Length = 442 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1208
3ef0_A372 RNA polymerase II subunit A C-terminal domain phos 7e-70
3ef1_A 442 RNA polymerase II subunit A C-terminal domain phos 9e-37
3ef1_A442 RNA polymerase II subunit A C-terminal domain phos 7e-19
2ght_A181 Carboxy-terminal domain RNA polymerase II polypept 3e-15
3qle_A204 TIM50P; chaperone, mitochondrion, preprotein trans 4e-15
2hhl_A195 CTD small phosphatase-like protein; CTD phosphatas 2e-14
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 9e-13
1vt4_I1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-09
1vt4_I1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-08
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-08
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-05
3l3e_A107 DNA topoisomerase 2-binding protein 1; BRCT domain 1e-08
1wf6_A132 Similar to S.pombe -RAD4+/CUT5+product (A40727); B 2e-08
2d8m_A129 DNA-repair protein XRCC1; parallel beta-sheet, DNA 2e-08
3shq_A320 UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila 1e-06
3l46_A112 Protein ECT2; alternative splicing, guanine-nucleo 6e-06
3olc_X 298 DNA topoisomerase 2-binding protein 1; BRCT domain 1e-05
2cou_A109 ECT2 protein; BRCT domain, RHO GTPase, structural 7e-05
2ebw_A97 DNA repair protein REV1; A/B/A 3 layers, parallel 7e-05
3pa6_A107 Microcephalin; BRCT domain, cell cycle; HET: MSE; 9e-05
3pc6_A104 DNA repair protein XRCC1; BRCT domain, protein:pro 3e-04
>3ef0_A RNA polymerase II subunit A C-terminal domain phosphatase; CTD, FCPH, BRCT, hydrolase, ALF4, transition state analog, cobalt, magnesium; 2.10A {Schizosaccharomyces pombe} Length = 372 Back     alignment and structure
 Score =  238 bits (607), Expect = 7e-70
 Identities = 92/349 (26%), Positives = 150/349 (42%), Gaps = 66/349 (18%)

Query: 901  IQKERTRRLEEQKKMFSARKLCLVLDLDHTLLNSAKFHEVDPVHDEILRKKEEQDREKPH 960
            ++ E  +RL ++      ++L L++DLD T++++     V     +      +  R+   
Sbjct: 5    LESENVKRLRQE------KRLSLIVDLDQTIIHATVDPTVGEWMSDPGNVNYDVLRDVRS 58

Query: 961  RHLFRFPH---MGMWTKLRPGIWTFLERASKLFEMHLYTMGNKLYATEMAKVLDPKGVLF 1017
             +L   P       + K RPG+  FL++ S+L+E+H+YTMG K YA E+AK++DP G LF
Sbjct: 59   FNLQEGPSGYTSCYYIKFRPGLAQFLQKISELYELHIYTMGTKAYAKEVAKIIDPTGKLF 118

Query: 1018 AGRVISRGDDGDPFDGDERVPKSKDLEGVLGME-SAVVIIDDSVRVWPHNKLNLIVVERY 1076
              RV+SR D G            K L  +   + S VV+IDD   VW  N  NLI V  Y
Sbjct: 119  QDRVLSRDDSGSLA--------QKSLRRLFPCDTSMVVVIDDRGDVWDWNP-NLIKVVPY 169

Query: 1077 TYFP-------------------------------CSRRQFGLLGPSLLEIDHDERSE-- 1103
             +F                                 S R       +LLE +        
Sbjct: 170  EFFVGIGDINSNFLSGNREALEEQNKERVTALELQKSERPLAKQQNALLEDEGKPTPSHT 229

Query: 1104 -----DGTLASSLGVIERLHKIFFSHQ--------SLDDVDVRNILAAEQRKILAGCRIV 1150
                 D  L     V++ +H +++  +        +    +V  I+   ++K+L GCR++
Sbjct: 230  LLHNRDHELERLEKVLKDIHAVYYEEENDISSRSGNHKHANVGLIIPKMKQKVLKGCRLL 289

Query: 1151 FSRVFPVGEANPHLHPLWQTAEQFGAVCTKHIDDQVTHVVANSLGTDKV 1199
            FS V P+G  +     + + A  FGA          TH++A  + T+KV
Sbjct: 290  FSGVIPLGV-DVLSSDIAKWAMSFGAEVVLDFSVPPTHLIAAKIRTEKV 337
>3ef1_A RNA polymerase II subunit A C-terminal domain phosphatase; CTD, FCPH, BRCT, hydrolase, BEF3, acylphosphate analog, cobalt, magnesium; HET: BFD; 2.15A {Schizosaccharomyces pombe} Length = 442 Back     alignment and structure
>3ef1_A RNA polymerase II subunit A C-terminal domain phosphatase; CTD, FCPH, BRCT, hydrolase, BEF3, acylphosphate analog, cobalt, magnesium; HET: BFD; 2.15A {Schizosaccharomyces pombe} Length = 442 Back     alignment and structure
>2ght_A Carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 1; protein-peptide complex, HAD superfamily, hydrolase; HET: SEP; 1.80A {Homo sapiens} PDB: 2ghq_A* 3pgl_A* 1t9z_A* 1ta0_A* 3l0c_A 3l0y_A 3l0b_A* 2q5e_A Length = 181 Back     alignment and structure
>3qle_A TIM50P; chaperone, mitochondrion, preprotein translocation; HET: 1PE; 1.83A {Saccharomyces cerevisiae EC1118} Length = 204 Back     alignment and structure
>2hhl_A CTD small phosphatase-like protein; CTD phosphatase, keggins anion, structural genomics, PSI, protein structure initiative; HET: KEG; 2.10A {Homo sapiens} Length = 195 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1wf6_A Similar to S.pombe -RAD4+/CUT5+product (A40727); BRCT, topoisomerase II binding protein, checkpoint; NMR {Homo sapiens} SCOP: c.15.1.5 Length = 132 Back     alignment and structure
>2d8m_A DNA-repair protein XRCC1; parallel beta-sheet, DNA ligase III, poly(ADP-ribose) polymerase-1, DNA polymerase beta, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 129 Back     alignment and structure
>3shq_A UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila melanogaster} Length = 320 Back     alignment and structure
>3l46_A Protein ECT2; alternative splicing, guanine-nucleotide releasing factor, phosphoprotein, polymorphism, proto-oncogene, structural genomics; 1.48A {Homo sapiens} Length = 112 Back     alignment and structure
>3olc_X DNA topoisomerase 2-binding protein 1; BRCT domain, DNA repair, RAD9, DNA binding protein; HET: DNA; 2.40A {Homo sapiens} PDB: 2xnk_A* 2xnh_A* Length = 298 Back     alignment and structure
>2cou_A ECT2 protein; BRCT domain, RHO GTPase, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Length = 109 Back     alignment and structure
>2ebw_A DNA repair protein REV1; A/B/A 3 layers, parallel beta-sheet, DNA replication, translession synthesis, TLS, DNA polymerase zeta, PCNA; HET: DNA; NMR {Homo sapiens} Length = 97 Back     alignment and structure
>3pa6_A Microcephalin; BRCT domain, cell cycle; HET: MSE; 1.50A {Homo sapiens} PDB: 3ktf_A* 2wt8_A* Length = 107 Back     alignment and structure
>3pc6_A DNA repair protein XRCC1; BRCT domain, protein:protein interactions, DNA L III-alpha BRCT2 domain, DNA binding protein; HET: DNA; 1.90A {Mus musculus} PDB: 3pc8_A* 3qvg_B* 1cdz_A Length = 104 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query1208
3ef1_A442 RNA polymerase II subunit A C-terminal domain phos 100.0
3ef0_A372 RNA polymerase II subunit A C-terminal domain phos 100.0
3qle_A204 TIM50P; chaperone, mitochondrion, preprotein trans 100.0
2ght_A181 Carboxy-terminal domain RNA polymerase II polypept 99.97
3shq_A320 UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila 99.95
2hhl_A195 CTD small phosphatase-like protein; CTD phosphatas 99.94
3l3e_A107 DNA topoisomerase 2-binding protein 1; BRCT domain 98.71
2d8m_A129 DNA-repair protein XRCC1; parallel beta-sheet, DNA 98.58
3l46_A112 Protein ECT2; alternative splicing, guanine-nucleo 98.22
3pa6_A107 Microcephalin; BRCT domain, cell cycle; HET: MSE; 98.14
2cou_A109 ECT2 protein; BRCT domain, RHO GTPase, structural 98.11
4id3_A92 DNA repair protein REV1; BRCT domain, protein bind 98.07
3olc_X298 DNA topoisomerase 2-binding protein 1; BRCT domain 97.87
1l0b_A 229 BRCA1; TANDEM-BRCT, three-helix bundle, unknown fu 97.86
3olc_X 298 DNA topoisomerase 2-binding protein 1; BRCT domain 97.85
1l7b_A92 DNA ligase; BRCT, autostructure, structural genomi 97.78
3pc6_A104 DNA repair protein XRCC1; BRCT domain, protein:pro 97.78
1wf6_A132 Similar to S.pombe -RAD4+/CUT5+product (A40727); B 97.76
2ebw_A97 DNA repair protein REV1; A/B/A 3 layers, parallel 97.75
2k6g_A109 Replication factor C subunit 1; protein, BRCT, DNA 97.71
2ebu_A112 Replication factor C subunit 1; A/B/A 3 layers, pa 97.64
1t15_A 214 Breast cancer type 1 susceptibility protein; prote 97.59
2etx_A 209 Mediator of DNA damage checkpoint protein 1; tande 97.48
3m9l_A205 Hydrolase, haloacid dehalogenase-like family; HAD 97.31
2cok_A113 Poly [ADP-ribose] polymerase-1; BRCT domain, DNA r 97.27
2wm8_A187 MDP-1, magnesium-dependent phosphatase 1; haloacid 97.18
3sqd_A 219 PAX-interacting protein 1; tandem BRCT domains, ce 97.17
2fpr_A176 Histidine biosynthesis bifunctional protein HISB; 97.17
3al2_A 235 DNA topoisomerase 2-binding protein 1; BRCT domain 97.11
3ib6_A189 Uncharacterized protein; structural genomics, unkn 97.03
2jw5_A106 DNA polymerase lambda; BRCT domain, family X polym 97.03
3m1y_A217 Phosphoserine phosphatase (SERB); NYSGXRC, PSI II, 96.87
3kzx_A231 HAD-superfamily hydrolase, subfamily IA, variant; 96.82
2pib_A216 Phosphorylated carbohydrates phosphatase TM_1254; 96.76
3l8h_A179 Putative haloacid dehalogenase-like hydrolase; HAD 96.73
2gmw_A211 D,D-heptose 1,7-bisphosphate phosphatase; Zn-bindi 96.7
2pr7_A137 Haloacid dehalogenase/epoxide hydrolase family; NP 96.61
3l41_A 220 BRCT-containing protein 1; BRC1, BRCT domain, tand 96.47
3um9_A230 Haloacid dehalogenase, type II; haloacid dehalogen 96.42
3u3z_A 199 Microcephalin; DNA repair, cell cycle regulation, 96.01
4eze_A317 Haloacid dehalogenase-like hydrolase; magnesium bi 95.93
1dgs_A667 DNA ligase; AMP complex, NAD+-dependent; HET: DNA 95.9
2p9j_A162 Hypothetical protein AQ2171; secsg, riken, PSI, st 95.89
3nuq_A282 Protein SSM1, putative nucleotide phosphatase; sup 95.84
2owo_A671 DNA ligase; protein-DNA complex, ligase-DNA comple 95.69
3zvl_A416 Bifunctional polynucleotide phosphatase/kinase; hy 95.67
4dcc_A229 Putative haloacid dehalogenase-like hydrolase; mag 95.66
3dv9_A247 Beta-phosphoglucomutase; structural genomics, APC6 95.65
1nnl_A225 L-3-phosphoserine phosphatase; PSP, HPSP, phospho- 95.51
3skx_A280 Copper-exporting P-type ATPase B; P1B-ATPase, ATP 95.46
3ii6_X 263 DNA ligase 4; XRCC4, NHEJ, DNA repair, BRCT, alter 95.38
1kzy_C 259 Tumor suppressor P53-binding protein 1; tandem-BRC 95.35
3iru_A277 Phoshonoacetaldehyde hydrolase like protein; phosp 95.18
2i7d_A193 5'(3')-deoxyribonucleotidase, cytosolic type; hydr 95.16
2o2x_A218 Hypothetical protein; structural genomics, joint c 95.12
2vxb_A 241 DNA repair protein RHP9; BRCT, nucleus, cell cycle 94.77
2coe_A120 Deoxynucleotidyltransferase, terminal variant; BRC 94.71
1k1e_A180 Deoxy-D-mannose-octulosonate 8-phosphate phosphat; 94.55
2oda_A196 Hypothetical protein pspto_2114; haloacid dehaloge 94.46
3nvb_A387 Uncharacterized protein; protein FKBH, protein fkb 93.97
2i33_A258 Acid phosphatase; HAD superfamily, hydrolase; 1.57 93.6
3ii6_X263 DNA ligase 4; XRCC4, NHEJ, DNA repair, BRCT, alter 93.32
2b0c_A206 Putative phosphatase; alpha-D-glucose-1-phosphate, 93.2
3mn1_A189 Probable YRBI family phosphatase; structural genom 92.5
1z56_C264 DNA ligase IV; DNA repair, BRCT, NHEJ, XRCC4, DNA 92.41
3p96_A415 Phosphoserine phosphatase SERB; ssgcid, structural 92.34
1q92_A197 5(3)-deoxyribonucleotidase; alpha-beta rossman fol 92.18
3mmz_A176 Putative HAD family hydrolase; structural genomics 92.13
3e8m_A164 Acylneuraminate cytidylyltransferase; 2-keto-3-deo 91.58
3bwv_A180 Putative 5'(3')-deoxyribonucleotidase; NP_764060.1 91.42
3ocu_A262 Lipoprotein E; hydrolase, outer membrane; HET: NMN 90.58
3pct_A260 Class C acid phosphatase; hydrolase, outer membran 90.11
3n07_A195 3-deoxy-D-manno-octulosonate 8-phosphate phosphat; 89.77
3e58_A214 Putative beta-phosphoglucomutase; structu genomics 89.73
3s6j_A233 Hydrolase, haloacid dehalogenase-like family; stru 89.73
2ep8_A100 Pescadillo homolog 1; A/B/A 3 layers, nucleolus, r 89.7
2r8e_A188 3-deoxy-D-manno-octulosonate 8-phosphate phosphata 89.51
3ij5_A211 3-deoxy-D-manno-octulosonate 8-phosphate phosphat; 89.3
2b82_A211 APHA, class B acid phosphatase; DDDD acid phosphat 89.24
3kbb_A216 Phosphorylated carbohydrates phosphatase TM_1254; 89.22
3qnm_A240 Haloacid dehalogenase-like hydrolase; structural g 89.21
3ed5_A238 YFNB; APC60080, bacillus subtilis subsp. subtilis 89.19
2hsz_A243 Novel predicted phosphatase; structural genomics, 88.61
3n1u_A191 Hydrolase, HAD superfamily, subfamily III A; struc 88.6
2nyv_A222 Pgpase, PGP, phosphoglycolate phosphatase; structu 88.55
2obb_A142 Hypothetical protein; structural genomics, PSI-2, 88.5
2hoq_A241 Putative HAD-hydrolase PH1655; haloacid dehalogena 88.2
4ex6_A237 ALNB; modified rossman fold, phosphatase, magnesiu 88.12
3umb_A233 Dehalogenase-like hydrolase; 2.20A {Ralstonia sola 88.01
2hdo_A209 Phosphoglycolate phosphatase; NP_784602.1, structu 87.93
3kd3_A219 Phosphoserine phosphohydrolase-like protein; csgid 86.94
2gfh_A260 Haloacid dehalogenase-like hydrolase domain conta; 86.86
2dun_A133 POL MU, DNA polymerase MU; layers A/B/A, parallel 86.8
4eek_A259 Beta-phosphoglucomutase-related protein; hydrolase 86.73
3mc1_A226 Predicted phosphatase, HAD family; PSI2, NYSGXRC, 86.46
1zrn_A232 L-2-haloacid dehalogenase; hydrolase; 1.83A {Pseud 86.37
1te2_A226 Putative phosphatase; structural genomics, phospha 85.88
2no4_A240 (S)-2-haloacid dehalogenase IVA; HAD superfamily, 85.56
1rku_A206 Homoserine kinase; phosphoserine phosphatase, phos 85.27
3pc7_A88 DNA ligase 3; DNA repair, BRCT domain, protein:pro 85.01
2ah5_A210 COG0546: predicted phosphatases; MCSG, structural 84.94
3ddh_A234 Putative haloacid dehalogenase-like family hydrol; 84.76
2hi0_A240 Putative phosphoglycolate phosphatase; YP_619066.1 84.74
3u26_A234 PF00702 domain protein; structural genomics, PSI-b 84.42
1l6r_A227 Hypothetical protein TA0175; structural genomics, 84.28
2go7_A207 Hydrolase, haloacid dehalogenase-like family; stru 84.15
3kc2_A352 Uncharacterized protein YKR070W; HAD-like, mitocho 83.33
3sd7_A240 Putative phosphatase; structural genomics, haloaci 83.17
1qq5_A253 Protein (L-2-haloacid dehalogenase); hydrolase; 1. 82.82
1yns_A261 E-1 enzyme; hydrolase fold; HET: HPO; 1.70A {Homo 82.31
2i6x_A211 Hydrolase, haloacid dehalogenase-like family; HAD 81.89
1z56_C 264 DNA ligase IV; DNA repair, BRCT, NHEJ, XRCC4, DNA 81.88
1wr8_A231 Phosphoglycolate phosphatase; alpha / beta core do 81.75
3smv_A240 S-(-)-azetidine-2-carboxylate hydrolase; haloacid 81.04
1xvi_A275 MPGP, YEDP, putative mannosyl-3-phosphoglycerate p 80.92
2zg6_A220 Putative uncharacterized protein ST2620, probable 80.12
>3ef1_A RNA polymerase II subunit A C-terminal domain phosphatase; CTD, FCPH, BRCT, hydrolase, BEF3, acylphosphate analog, cobalt, magnesium; HET: BFD; 2.15A {Schizosaccharomyces pombe} Back     alignment and structure
Probab=100.00  E-value=1e-55  Score=499.65  Aligned_cols=287  Identities=33%  Similarity=0.535  Sum_probs=233.9

Q ss_pred             HhHHHHhhHHH--HHhhhcCCCeEEEEeCCCceeecccCCCCCCchhhhhhhccccccCCC------cceeeeec-----
Q 000959          901 IQKERTRRLEE--QKKMFSARKLCLVLDLDHTLLNSAKFHEVDPVHDEILRKKEEQDREKP------HRHLFRFP-----  967 (1208)
Q Consensus       901 I~ke~arrLe~--q~rLLs~rKLTLVLDLDETLIHSt~~~evdP~~~Eil~~~ee~D~~~P------~~~lFrlp-----  967 (1208)
                      ++.++|.++..  +++|+..+||+||||||||||||+.    +|...+|...     ...|      +...|.++     
T Consensus         5 vs~~~a~~~~~~~~~rll~~~Kl~LVLDLDeTLiHs~~----~~~~~~~~~~-----~~~~~~~~~~dv~~F~l~~~~~~   75 (442)
T 3ef1_A            5 VSLEEASRLESENVKRLRQEKRLSLIVXLDQTIIHATV----DPTVGEWMSD-----PGNVNYDVLRDVRSFNLQEGPSG   75 (442)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCEEEEECCBTTTEEEEC----CTHHHHHHTC-----TTSTTTGGGTTCEEEEEEETTTT
T ss_pred             ecHHHHHHHHHHHHHHHHhcCCeEEEEeeccceecccc----ccccchhccC-----CCCcchhhhccccceeeeeccCC
Confidence            45566766655  5789999999999999999999984    4554555321     1111      12346654     


Q ss_pred             -cceEEEEeccCHHHHHHHhhcccEEEEEcCCcHHHHHHHHHHhcCCCceeeeeEEecCCCCCCCCCCCCCCccccCCCc
Q 000959          968 -HMGMWTKLRPGIWTFLERASKLFEMHLYTMGNKLYATEMAKVLDPKGVLFAGRVISRGDDGDPFDGDERVPKSKDLEGV 1046 (1208)
Q Consensus       968 -~~~~yVKLRPGLdEFLeeLSklYEIVIYTAGtreYAd~VLdiLDP~gkLFs~RIiSRDDc~~~fdG~er~~yvKDLsrV 1046 (1208)
                       ...|||++|||+++||++|+++|||+|||++.+.||++|+++|||++.||.+|||+|++|+.        .|+|||++|
T Consensus        76 ~~~~~~V~~RPgl~eFL~~ls~~yEivIfTas~~~YA~~Vl~~LDp~~~~f~~Rl~sRd~cg~--------~~~KdL~~l  147 (442)
T 3ef1_A           76 YTSCYYIKFRPGLAQFLQKISELYELHIYTMGTKAYAKEVAKIIDPTGKLFQDRVLSRDDSGS--------LAQKSLRRL  147 (442)
T ss_dssp             EEEEEEEEECTTHHHHHHHHTTTEEEEEECSSCHHHHHHHHHHHCTTSTTTTTCEECTTTSSC--------SSCCCGGGT
T ss_pred             ceeEEEEEeCCCHHHHHHHHhCCcEEEEEcCCCHHHHHHHHHHhccCCccccceEEEecCCCC--------ceeeehHHh
Confidence             35799999999999999999999999999999999999999999999999999999998742        478999988


Q ss_pred             cCCC-CcEEEEcCCCcccccCCCCeEEeccccccCccc---------cc-----cCC-C--CCCcc--------------
Q 000959         1047 LGME-SAVVIIDDSVRVWPHNKLNLIVVERYTYFPCSR---------RQ-----FGL-L--GPSLL-------------- 1094 (1208)
Q Consensus      1047 LGrD-srVVIIDDrpdVW~~qpdNlI~IkpY~YF~~s~---------rQ-----fGl-p--gPSLl-------------- 1094 (1208)
                      |||+ ++||||||++.+|..|+ |+|+|+||+||.+..         ++     +++ +  .|+..              
T Consensus       148 l~rdl~~vvIIDd~p~~~~~~p-N~I~I~~~~fF~~~gD~n~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  226 (442)
T 3ef1_A          148 FPCDTSMVVVIDDRGDVWDWNP-NLIKVVPYEFFVGIGDINSNFLAKSTPLPEQEQLIPLEIPKDEPDSVDEINEENEET  226 (442)
T ss_dssp             CSSCCTTEEEEESCSGGGTTCT-TEEECCCCCCSTTCCCSCC--------------------------------------
T ss_pred             cCCCcceEEEEECCHHHhCCCC-CEEEcCCccccCCCCcccccccccccccccccccccccccccccccccccccccccC
Confidence            9998 99999999999999996 999999999998742         12     233 1  11100              


Q ss_pred             ---------------------------------------------c--------------ccccC----------Cccch
Q 000959         1095 ---------------------------------------------E--------------IDHDE----------RSEDG 1105 (1208)
Q Consensus      1095 ---------------------------------------------E--------------id~DE----------dpeDg 1105 (1208)
                                                                   |              .+.||          ...|+
T Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~rpl~~~q~~l~~~~~~~~~~~~~l~d~D~  306 (442)
T 3ef1_A          227 PEYDSSNSSYAQDSSTIPEKTLLKDTFLQNREALEEQNKERVTALELQKSERPLAKQQNALLEDEGKPTPSHTLLHNRDH  306 (442)
T ss_dssp             --------------------------------CHHHHHHHHHHHHHHHHHHCHHHHHHHHHHTSCCSCHHHHCSCCCCCC
T ss_pred             cccccccccccccccccchhhhhccccCccchhhHHHHHHhhhhhhhhhccCchhhHHHHhhhhhhccccccccccCCcH
Confidence                                                         0              00011          13588


Q ss_pred             hhhHHHHHHHHHHHhhhcCCC--------CCCCCHHHHHHHHHHhhhcCceEEeeeeccCCCCCCCCchHHHHHHhcCCE
Q 000959         1106 TLASSLGVIERLHKIFFSHQS--------LDDVDVRNILAAEQRKILAGCRIVFSRVFPVGEANPHLHPLWQTAEQFGAV 1177 (1208)
Q Consensus      1106 ~L~sLL~~LerIHq~FF~~~d--------L~~~DVR~ILreiRrkVL~GC~IVFSGVfPlg~anPe~h~LWrLAEsFGAt 1177 (1208)
                      +|..++.+|.+||++||+.++        ...+||+.||+++|+++|.||+|+|||++|.+. +++.+.+|++|+.|||+
T Consensus       307 ~L~~l~~~L~~iH~~fy~~~d~~~~~~~~~~~~Dv~~il~~~k~~~L~G~~IvfSG~~p~~~-~~~r~~l~~~~~~lGa~  385 (442)
T 3ef1_A          307 ELERLEKVLKDIHAVYYEEENDISSRSGNHKHANVGLIIPKMKQKVLKGCRLLFSGVIPLGV-DVLSSDIAKWAMSFGAE  385 (442)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTCCSCCSSSCCCCHHHHHHHHHHTTSTTCEEEEESSSCTTS-CSTTSHHHHHHHTTTCE
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhcccccccCCCCcHHHHHHHHhhcccCCcEEEEecccCCCC-CccHHHHHHHHHHcCCE
Confidence            999999999999999998653        235799999999999999999999999999874 46778999999999999


Q ss_pred             EecccCCCccEEEeCCCCcHHHHHHHHhc
Q 000959         1178 CTKHIDDQVTHVVANSLGTDKVLLVVFSL 1206 (1208)
Q Consensus      1178 ct~sId~~VTHVVAa~~GTeKVr~A~~~g 1206 (1208)
                      |+.+++.+||||||...+|.|+++|++.|
T Consensus       386 ~~~~vs~~vTHLVa~~~~t~K~~~A~~~g  414 (442)
T 3ef1_A          386 VVLDFSVPPTHLIAAKIRTEKVKKAVSMG  414 (442)
T ss_dssp             ECSSSSSCCSEEEECSCCCHHHHHHHHHS
T ss_pred             EeCCCCCCceEEEeCCCCCHHHHHHHhcC
Confidence            99999999999999999999999999974
>3ef0_A RNA polymerase II subunit A C-terminal domain phosphatase; CTD, FCPH, BRCT, hydrolase, ALF4, transition state analog, cobalt, magnesium; 2.10A {Schizosaccharomyces pombe} Back     alignment and structure
>3qle_A TIM50P; chaperone, mitochondrion, preprotein translocation; HET: 1PE; 1.83A {Saccharomyces cerevisiae EC1118} Back     alignment and structure
>2ght_A Carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 1; protein-peptide complex, HAD superfamily, hydrolase; HET: SEP; 1.80A {Homo sapiens} PDB: 2ghq_A* 3pgl_A* 1t9z_A* 1ta0_A* 3l0c_A 3l0y_A 3l0b_A* 2q5e_A Back     alignment and structure
>3shq_A UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila melanogaster} Back     alignment and structure
>2hhl_A CTD small phosphatase-like protein; CTD phosphatase, keggins anion, structural genomics, PSI, protein structure initiative; HET: KEG; 2.10A {Homo sapiens} Back     alignment and structure
>2d8m_A DNA-repair protein XRCC1; parallel beta-sheet, DNA ligase III, poly(ADP-ribose) polymerase-1, DNA polymerase beta, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>3l46_A Protein ECT2; alternative splicing, guanine-nucleotide releasing factor, phosphoprotein, polymorphism, proto-oncogene, structural genomics; 1.48A {Homo sapiens} Back     alignment and structure
>3pa6_A Microcephalin; BRCT domain, cell cycle; HET: MSE; 1.50A {Homo sapiens} PDB: 3ktf_A* 2wt8_A* Back     alignment and structure
>2cou_A ECT2 protein; BRCT domain, RHO GTPase, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Back     alignment and structure
>4id3_A DNA repair protein REV1; BRCT domain, protein binding; HET: DNA; 1.97A {Saccharomyces cerevisiae S288C} Back     alignment and structure
>3olc_X DNA topoisomerase 2-binding protein 1; BRCT domain, DNA repair, RAD9, DNA binding protein; HET: DNA; 2.40A {Homo sapiens} PDB: 2xnk_A* 2xnh_A* Back     alignment and structure
>1l0b_A BRCA1; TANDEM-BRCT, three-helix bundle, unknown function; 2.30A {Rattus norvegicus} SCOP: c.15.1.3 c.15.1.3 Back     alignment and structure
>3olc_X DNA topoisomerase 2-binding protein 1; BRCT domain, DNA repair, RAD9, DNA binding protein; HET: DNA; 2.40A {Homo sapiens} PDB: 2xnk_A* 2xnh_A* Back     alignment and structure
>1l7b_A DNA ligase; BRCT, autostructure, structural genomics, NESG, PSI, protein structure initiative, northeast structural genomics consortium; HET: DNA; NMR {Thermus thermophilus} SCOP: c.15.1.2 Back     alignment and structure
>3pc6_A DNA repair protein XRCC1; BRCT domain, protein:protein interactions, DNA L III-alpha BRCT2 domain, DNA binding protein; HET: DNA; 1.90A {Mus musculus} SCOP: c.15.1.1 PDB: 3pc8_A* 3qvg_B* 1cdz_A Back     alignment and structure
>1wf6_A Similar to S.pombe -RAD4+/CUT5+product (A40727); BRCT, topoisomerase II binding protein, checkpoint; NMR {Homo sapiens} SCOP: c.15.1.5 Back     alignment and structure
>2ebw_A DNA repair protein REV1; A/B/A 3 layers, parallel beta-sheet, DNA replication, translession synthesis, TLS, DNA polymerase zeta, PCNA; HET: DNA; NMR {Homo sapiens} Back     alignment and structure
>2k6g_A Replication factor C subunit 1; protein, BRCT, DNA binding, activator, alternative splicing, ATP-binding, DNA replication, DNA- binding; NMR {Homo sapiens} PDB: 2k7f_A Back     alignment and structure
>2ebu_A Replication factor C subunit 1; A/B/A 3 layers, parallel beta-sheet, DNA replication, clamp loader, RFC1, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1t15_A Breast cancer type 1 susceptibility protein; protein-peptide complex, antitumor protein; HET: SEP; 1.85A {Homo sapiens} SCOP: c.15.1.3 c.15.1.3 PDB: 1jnx_X* 1t29_A* 1t2v_A* 1y98_A* 3coj_X* 3k0h_A* 3k0k_A* 3pxe_A* 3pxb_A 3pxc_X 1t2u_A 1n5o_X 3pxa_A 3k15_A* 3k16_A* 3pxd_A 2ing_X 1oqa_A Back     alignment and structure
>2etx_A Mediator of DNA damage checkpoint protein 1; tandem BRCT domains histone gamma-H2AX, cell cycle; 1.33A {Homo sapiens} PDB: 2azm_A* 3k05_A* 2ado_A Back     alignment and structure
>3m9l_A Hydrolase, haloacid dehalogenase-like family; HAD family hydrolase, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Pseudomonas fluorescens} PDB: 2ybd_A* 3r09_A* Back     alignment and structure
>2cok_A Poly [ADP-ribose] polymerase-1; BRCT domain, DNA repair, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2le0_A Back     alignment and structure
>2wm8_A MDP-1, magnesium-dependent phosphatase 1; haloacid dehalogenase, protein phosphatase, hydrolase, magne metal-binding; 1.75A {Homo sapiens} PDB: 1u7o_A 1u7p_A Back     alignment and structure
>3sqd_A PAX-interacting protein 1; tandem BRCT domains, cell cycle; HET: SEP; 2.15A {Homo sapiens} Back     alignment and structure
>2fpr_A Histidine biosynthesis bifunctional protein HISB; histidinola phosphate phosphatase, bifunctional enzyme structural genomics; 1.70A {Escherichia coli} SCOP: c.108.1.19 PDB: 2fps_A 2fpu_A* 2fpx_A 2fpw_A* Back     alignment and structure
>3al2_A DNA topoisomerase 2-binding protein 1; BRCT domain, protein binding, DNA binding protein; HET: DNA MSE; 2.00A {Homo sapiens} PDB: 3al3_A* Back     alignment and structure
>3ib6_A Uncharacterized protein; structural genomics, unknown function, PSI-2, protein struct initiative; 2.20A {Listeria monocytogenes} Back     alignment and structure
>2jw5_A DNA polymerase lambda; BRCT domain, family X polymerase, nonhomologous END joining (NHEJ), DNA damage, DNA repair, DNA replication, DNA synthesis; HET: DNA; NMR {Homo sapiens} Back     alignment and structure
>3m1y_A Phosphoserine phosphatase (SERB); NYSGXRC, PSI II, phophoserine phosphatase, protein structure initiative, structural genomics; 2.40A {Helicobacter pylori} SCOP: c.108.1.0 Back     alignment and structure
>3kzx_A HAD-superfamily hydrolase, subfamily IA, variant; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 1.90A {Ehrlichia chaffeensis} Back     alignment and structure
>3l8h_A Putative haloacid dehalogenase-like hydrolase; HAD superfamily, GMHB, D-glycero-D-manno-heptose-1, 7-bispho phosphatase; HET: FX1; 1.68A {Bordetella bronchiseptica} Back     alignment and structure
>2gmw_A D,D-heptose 1,7-bisphosphate phosphatase; Zn-binding protein, hydrolase; 1.50A {Escherichia coli} SCOP: c.108.1.19 PDB: 3esq_A 3esr_A 3l1u_A 3l1v_A 3l8e_A 3l8f_A 3l8g_A* Back     alignment and structure
>2pr7_A Haloacid dehalogenase/epoxide hydrolase family; NP_599989.1, uncharacterized protein, structural genomics; 1.44A {Corynebacterium glutamicum atcc 13032} Back     alignment and structure
>3l41_A BRCT-containing protein 1; BRC1, BRCT domain, tandem BRCT repeat, phosphoserine binding domain, DNA repair, cell division, mitosis; HET: SEP; 1.45A {Schizosaccharomyces pombe} PDB: 3l40_A* Back     alignment and structure
>3um9_A Haloacid dehalogenase, type II; haloacid dehalogenase-like hydrolase protein superfamily, defluorinase, hydrolase; 2.19A {Polaromonas SP} Back     alignment and structure
>3u3z_A Microcephalin; DNA repair, cell cycle regulation, cell cycle; HET: SEP PTR; 1.50A {Homo sapiens} PDB: 3szm_A* 3t1n_A* 3sht_A 3shv_A* Back     alignment and structure
>4eze_A Haloacid dehalogenase-like hydrolase; magnesium binding site, enzyme function initiativ; 2.27A {Salmonella enterica subsp} Back     alignment and structure
>1dgs_A DNA ligase; AMP complex, NAD+-dependent; HET: DNA AMP; 2.90A {Thermus filiformis} SCOP: a.60.2.2 b.40.4.6 d.142.2.2 PDB: 1v9p_A* Back     alignment and structure
>2p9j_A Hypothetical protein AQ2171; secsg, riken, PSI, structural GENO protein structure initiative, southeast collaboratory for S genomics; 2.40A {Aquifex aeolicus} Back     alignment and structure
>3nuq_A Protein SSM1, putative nucleotide phosphatase; suppresses the 6-AU sensitivity of transcription elongation II; 1.70A {Saccharomyces cerevisiae} PDB: 3onn_A 3opx_A* Back     alignment and structure
>2owo_A DNA ligase; protein-DNA complex, ligase-DNA complex; HET: DNA OMC AMP; 2.30A {Escherichia coli} Back     alignment and structure
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A* Back     alignment and structure
>4dcc_A Putative haloacid dehalogenase-like hydrolase; magnesium binding site, enzyme function initiativ; 1.65A {Bacteroides thetaiotaomicron} PDB: 4dfd_A 4f71_A 4f72_A Back     alignment and structure
>3dv9_A Beta-phosphoglucomutase; structural genomics, APC60149, PSI- protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.72A {Bacteroides vulgatus} Back     alignment and structure
>1nnl_A L-3-phosphoserine phosphatase; PSP, HPSP, phospho-aspartyl, hydrolase; 1.53A {Homo sapiens} SCOP: c.108.1.4 PDB: 1l8l_A* 1l8o_A Back     alignment and structure
>3skx_A Copper-exporting P-type ATPase B; P1B-ATPase, ATP binding domain, copper(II) transporter, MEMB protein, hydrolase; 1.59A {Archaeoglobus fulgidus} PDB: 3sky_A* Back     alignment and structure
>3ii6_X DNA ligase 4; XRCC4, NHEJ, DNA repair, BRCT, alternative splicing, coiled coil, DNA damage, DNA recombination, isopeptide bond, nucleus; HET: DNA; 2.40A {Homo sapiens} PDB: 2e2w_A* Back     alignment and structure
>1kzy_C Tumor suppressor P53-binding protein 1; tandem-BRCT and linker complexed with non-BRCT protein, three-helix bundle, parallel beta sheet; 2.50A {Homo sapiens} SCOP: c.15.1.4 c.15.1.4 PDB: 1gzh_B Back     alignment and structure
>3iru_A Phoshonoacetaldehyde hydrolase like protein; phosphonoacetaldehyde hydrolase like P structural genomics, PSI-2, protein structure initiative; 2.30A {Oleispira antarctica} SCOP: c.108.1.0 Back     alignment and structure
>2i7d_A 5'(3')-deoxyribonucleotidase, cytosolic type; hydrolase; HET: DUR; 1.20A {Homo sapiens} PDB: 2jar_A* 2jao_A* Back     alignment and structure
>2o2x_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, hydrolase; 1.50A {Mesorhizobium loti} SCOP: c.108.1.19 Back     alignment and structure
>2vxb_A DNA repair protein RHP9; BRCT, nucleus, cell cycle, DNA damage, DNA replication inhibitor, phosphoprotein, checkpoint signalling; HET: DNA; 2.3A {Schizosaccharomyces pombe} PDB: 2vxc_A* Back     alignment and structure
>2coe_A Deoxynucleotidyltransferase, terminal variant; BRCT domain, DNA polymerase, teminal deoxynucleotidyltransferase, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1k1e_A Deoxy-D-mannose-octulosonate 8-phosphate phosphat; structural genomics, KDO 8-P phosphatase, structure function project, S2F; HET: MES; 1.67A {Haemophilus influenzae RD} SCOP: c.108.1.5 PDB: 1j8d_A* Back     alignment and structure
>2oda_A Hypothetical protein pspto_2114; haloacid dehalogenase, phosphonoacetaldehyde hydrolase, protein binding; HET: EPE; 1.90A {Pseudomonas syringae PV} Back     alignment and structure
>2i33_A Acid phosphatase; HAD superfamily, hydrolase; 1.57A {Bacillus anthracis} PDB: 2i34_A Back     alignment and structure
>3ii6_X DNA ligase 4; XRCC4, NHEJ, DNA repair, BRCT, alternative splicing, coiled coil, DNA damage, DNA recombination, isopeptide bond, nucleus; HET: DNA; 2.40A {Homo sapiens} PDB: 2e2w_A* Back     alignment and structure
>2b0c_A Putative phosphatase; alpha-D-glucose-1-phosphate, structural genomic protein structure initiative, midwest center for structural genomics, MCSG; HET: G1P; 2.00A {Escherichia coli} SCOP: c.108.1.2 Back     alignment and structure
>3mn1_A Probable YRBI family phosphatase; structural genomics, PSI, protein structure initiative, NYSG phosphatase; 1.80A {Pseudomonas syringae PV} PDB: 3nrj_A Back     alignment and structure
>1z56_C DNA ligase IV; DNA repair, BRCT, NHEJ, XRCC4, DNA ligase, coiled-coil; HET: DNA; 3.92A {Saccharomyces cerevisiae} Back     alignment and structure
>3p96_A Phosphoserine phosphatase SERB; ssgcid, structural genomics, structural genomics center for infectious disease, hydrolas; 2.05A {Mycobacterium avium} Back     alignment and structure
>1q92_A 5(3)-deoxyribonucleotidase; alpha-beta rossman fold, hydrolase; HET: DRM; 1.40A {Homo sapiens} SCOP: c.108.1.8 PDB: 1mh9_A* 1q91_A* 1z4m_A* 1z4i_A* 1z4j_A* 1z4l_A* 1z4k_A* 1z4p_X* 1z4q_A* 2jau_A* 2jaw_A* 3u19_A* 3u13_A 4e88_A Back     alignment and structure
>3mmz_A Putative HAD family hydrolase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 1.84A {Streptomyces avermitilis} Back     alignment and structure
>3e8m_A Acylneuraminate cytidylyltransferase; 2-keto-3-deoxynononic acid 9-phosphate phosphohydrolase, nucleotidyltransferase; HET: PEG PG4 EDO PGE; 1.10A {Bacteroides thetaiotaomicron} PDB: 3e84_A 3e81_A* Back     alignment and structure
>3bwv_A Putative 5'(3')-deoxyribonucleotidase; NP_764060.1, deoxyribonucleotidase-like protein; HET: MSE; 1.55A {Staphylococcus epidermidis} Back     alignment and structure
>3ocu_A Lipoprotein E; hydrolase, outer membrane; HET: NMN; 1.35A {Haemophilus influenzae} PDB: 3ocv_A* 3ocw_A* 3ocx_A* 3ocz_A* 3ocy_A* 3sf0_A* 2hlk_A 2hll_A 3et4_A 3et5_A Back     alignment and structure
>3pct_A Class C acid phosphatase; hydrolase, outer membrane; 1.85A {Pasteurella multocida} Back     alignment and structure
>3n07_A 3-deoxy-D-manno-octulosonate 8-phosphate phosphat; structural genomics, phosphatase, PSI-2, protein structure initiative; HET: MSE; 1.76A {Vibrio cholerae} Back     alignment and structure
>3e58_A Putative beta-phosphoglucomutase; structu genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 1.86A {Streptococcus thermophilus lmg 18311} Back     alignment and structure
>3s6j_A Hydrolase, haloacid dehalogenase-like family; structural genomics, PSI-2; 2.20A {Pseudomonas syringae PV} Back     alignment and structure
>2ep8_A Pescadillo homolog 1; A/B/A 3 layers, nucleolus, ribosome biogenesis, DNA damage, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2r8e_A 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase; YRBI, divalent metal, HAD superfamily, KDO 8-P, hydrolase; 1.40A {Escherichia coli O6} PDB: 2r8x_A 2r8y_A 2r8z_A 3hyc_A 3i6b_A* Back     alignment and structure
>3ij5_A 3-deoxy-D-manno-octulosonate 8-phosphate phosphat; IDP022 hydrolase, lipopolysaccharide biosynthesis, magnesium, STRU genomics; 1.95A {Yersinia pestis} Back     alignment and structure
>2b82_A APHA, class B acid phosphatase; DDDD acid phosphatase, metallo-ENZ hydrolase; HET: ADN; 1.25A {Escherichia coli} SCOP: c.108.1.12 PDB: 2b8j_A* 2hf7_A 1rmt_A* 1n9k_A 1rmq_A 1n8n_A* 1rmy_A* 2g1a_A* 3cz4_A 2heg_A* 1z5g_A 1z5u_A* 1z88_A 2aut_A Back     alignment and structure
>3kbb_A Phosphorylated carbohydrates phosphatase TM_1254; hydrolase, arbohydrate metabolism, COBA magnesium, manganese, metal-binding, nickel; HET: MSE GOL; 1.74A {Thermotoga maritima MSB8} Back     alignment and structure
>3qnm_A Haloacid dehalogenase-like hydrolase; structural genomics, PSI-2, protein structure initiative; 1.70A {Bacteroides thetaiotaomicron} SCOP: c.108.1.0 Back     alignment and structure
>3ed5_A YFNB; APC60080, bacillus subtilis subsp. subtilis STR. 168, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.72A {Bacillus subtilis} PDB: 3i76_A Back     alignment and structure
>2hsz_A Novel predicted phosphatase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: UNL; 1.90A {Haemophilus somnus 129PT} SCOP: c.108.1.6 Back     alignment and structure
>3n1u_A Hydrolase, HAD superfamily, subfamily III A; structural genomics, PSI-2; 1.80A {Legionella pneumophila} SCOP: c.108.1.0 Back     alignment and structure
>2nyv_A Pgpase, PGP, phosphoglycolate phosphatase; structural genomics, PSI-2, protein structure initiative; 2.10A {Aquifex aeolicus} PDB: 2yy6_A Back     alignment and structure
>2obb_A Hypothetical protein; structural genomics, PSI-2, PR structure initiative, midwest center for structural genomic unknown function; 2.20A {Bacteroides thetaiotaomicron} SCOP: c.108.1.25 Back     alignment and structure
>2hoq_A Putative HAD-hydrolase PH1655; haloacid dehalogenase, structural genomics, NPPSFA, national on protein structural and functional analyses; 1.70A {Pyrococcus horikoshii} Back     alignment and structure
>4ex6_A ALNB; modified rossman fold, phosphatase, magnesium binding, hydro; 1.25A {Streptomyces SP} PDB: 4ex7_A Back     alignment and structure
>3umb_A Dehalogenase-like hydrolase; 2.20A {Ralstonia solanacearum} Back     alignment and structure
>2hdo_A Phosphoglycolate phosphatase; NP_784602.1, structur genomics, PSI-2, protein structure initiative, joint center structural genomics; HET: MSE; 1.50A {Lactobacillus plantarum} SCOP: c.108.1.6 Back     alignment and structure
>3kd3_A Phosphoserine phosphohydrolase-like protein; csgid, niaid, S genomics, national institute of allergy and infectious DISE (niaid); 1.70A {Francisella tularensis subsp} Back     alignment and structure
>2gfh_A Haloacid dehalogenase-like hydrolase domain conta; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.90A {Mus musculus} SCOP: c.108.1.6 PDB: 2w4m_A Back     alignment and structure
>2dun_A POL MU, DNA polymerase MU; layers A/B/A, parallel beta-sheet of 4 strands, non- homologous END jonting, somatic hypermutation, V(D)J recombination; HET: DNA; NMR {Homo sapiens} PDB: 2htf_A* Back     alignment and structure
>4eek_A Beta-phosphoglucomutase-related protein; hydrolase, magnesium binding site, enzyme function initiativ; 1.60A {Deinococcus radiodurans} PDB: 4eel_A* 4een_A Back     alignment and structure
>3mc1_A Predicted phosphatase, HAD family; PSI2, NYSGXRC, structural genomics, protein structure initiative; 1.93A {Clostridium acetobutylicum} SCOP: c.108.1.0 Back     alignment and structure
>1zrn_A L-2-haloacid dehalogenase; hydrolase; 1.83A {Pseudomonas SP} SCOP: c.108.1.1 PDB: 1zrm_A 1jud_A 1qh9_A Back     alignment and structure
>1te2_A Putative phosphatase; structural genomics, phosphates, PSI, protein S initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.76A {Escherichia coli} SCOP: c.108.1.6 Back     alignment and structure
>2no4_A (S)-2-haloacid dehalogenase IVA; HAD superfamily, rossman fold, hydrol; 1.93A {Burkholderia cepacia} PDB: 2no5_A* Back     alignment and structure
>1rku_A Homoserine kinase; phosphoserine phosphatase, phosphoserine:homoserine phosphotransferase, THRH, phosphoserine phosphoryl donor; 1.47A {Pseudomonas aeruginosa} SCOP: c.108.1.11 PDB: 1rkv_A Back     alignment and structure
>3pc7_A DNA ligase 3; DNA repair, BRCT domain, protein:protein interactions, XRCC1 domain, DNA binding protein; HET: DNA MSE; 1.65A {Homo sapiens} SCOP: c.15.1.2 PDB: 3pc8_C* 1imo_A* 1in1_A* 3qvg_A* Back     alignment and structure
>2ah5_A COG0546: predicted phosphatases; MCSG, structural genomics, hydrola haloacid dehalogenase-like, PSI; 1.74A {Streptococcus pneumoniae} SCOP: c.108.1.6 Back     alignment and structure
>3ddh_A Putative haloacid dehalogenase-like family hydrol; hydrolase, HAD superfamily, ST genomics, PSI-2, protein structure initiative; 2.00A {Bacteroides thetaiotaomicron} Back     alignment and structure
>2hi0_A Putative phosphoglycolate phosphatase; YP_619066.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.51A {Lactobacillus delbrueckii} Back     alignment and structure
>3u26_A PF00702 domain protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, unknown function; 1.59A {Pyrococcus horikoshii} SCOP: c.108.1.1 PDB: 1x42_A Back     alignment and structure
>1l6r_A Hypothetical protein TA0175; structural genomics, putative hydrolas midwest center for structural genomics, MCSG, PSI; 1.40A {Thermoplasma acidophilum} SCOP: c.108.1.10 PDB: 1kyt_A Back     alignment and structure
>2go7_A Hydrolase, haloacid dehalogenase-like family; structural genomics, joint center for structural genomics, J protein structure initiative; 2.10A {Streptococcus pneumoniae} SCOP: c.108.1.6 Back     alignment and structure
>3kc2_A Uncharacterized protein YKR070W; HAD-like, mitochondral protein, PSI, MCSG, structural genomi protein structure initiative; HET: MSE; 1.55A {Saccharomyces cerevisiae} PDB: 3rf6_A* Back     alignment and structure
>3sd7_A Putative phosphatase; structural genomics, haloacid dehalogenase-like hydrolase, H center for structural genomics of infectious diseases; HET: PGE; 1.70A {Clostridium difficile} Back     alignment and structure
>1qq5_A Protein (L-2-haloacid dehalogenase); hydrolase; 1.52A {Xanthobacter autotrophicus} SCOP: c.108.1.1 PDB: 1qq6_A* 1qq7_A* 1aq6_A Back     alignment and structure
>1yns_A E-1 enzyme; hydrolase fold; HET: HPO; 1.70A {Homo sapiens} SCOP: c.108.1.22 PDB: 1zs9_A Back     alignment and structure
>2i6x_A Hydrolase, haloacid dehalogenase-like family; HAD superfamily, struct genomics, PSI-2, protein structure initiative; HET: MSE; 2.40A {Porphyromonas gingivalis} Back     alignment and structure
>1z56_C DNA ligase IV; DNA repair, BRCT, NHEJ, XRCC4, DNA ligase, coiled-coil; HET: DNA; 3.92A {Saccharomyces cerevisiae} Back     alignment and structure
>1wr8_A Phosphoglycolate phosphatase; alpha / beta core domain, HAD superfamily, structural genomi structural genomics/proteomics initiative, RSGI; 1.60A {Pyrococcus horikoshii} SCOP: c.108.1.10 Back     alignment and structure
>3smv_A S-(-)-azetidine-2-carboxylate hydrolase; haloacid dehalogenase superfamily, L-azetidine-2- carboxylate; HET: GOL; 1.38A {Pseudomonas} Back     alignment and structure
>1xvi_A MPGP, YEDP, putative mannosyl-3-phosphoglycerate phosphatase; hypothetical protein, conserved protein, phophatase-like domain; HET: 1PE PG4 PGE; 2.26A {Escherichia coli K12} SCOP: c.108.1.10 Back     alignment and structure
>2zg6_A Putative uncharacterized protein ST2620, probable 2-haloalkanoic; probable 2-haloalkanoic acid dehalogenase, hydrolase, structural genomics; 2.40A {Sulfolobus tokodaii} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 1208
d1ta0a_181 c.108.1.16 (A:) Carboxy-terminal domain RNA polyme 2e-26
d1zx0a1229 c.66.1.16 (A:8-236) Guanidinoacetate methyltransfe 0.002
>d1ta0a_ c.108.1.16 (A:) Carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 1, NRAMP1 {Human (Homo sapiens) [TaxId: 9606]} Length = 181 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: NLI interacting factor-like phosphatase
domain: Carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 1, NRAMP1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  105 bits (262), Expect = 2e-26
 Identities = 37/169 (21%), Positives = 62/169 (36%), Gaps = 21/169 (12%)

Query: 912  QKKMFSARKLCLVLDLDHTLLNSAKFHEVDPVHDEILRKKEEQDREKPHRHLFRFPHMGM 971
            + K   + K+C+V+DLD TL++S                K   + +             +
Sbjct: 7    EAKAQDSDKICVVIDLDETLVHS--------------SFKPVNNADFIIPVEIDGVVHQV 52

Query: 972  WTKLRPGIWTFLERASKLFEMHLYTMGNKLYATEMAKVLDPKGVLFAGRVISRGDDGDPF 1031
            +   RP +  FL+R  +LFE  L+T     YA  +A +LD  G   A             
Sbjct: 53   YVLKRPHVDEFLQRMGELFECVLFTASLAKYADPVADLLDKWGAFRARLFRESCVFHRGN 112

Query: 1032 DGDERVPKSKDLEGVLGMESAVVIIDDSVRVWPHNKLNLIVVERYTYFP 1080
                     KDL  +      V+I+D+S   +  +  N + V  +    
Sbjct: 113  YV-------KDLSRLGRDLRRVLILDNSPASYVFHPDNAVPVASWFDNM 154
>d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]} Length = 229 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query1208
d1ta0a_181 Carboxy-terminal domain RNA polymerase II polypept 100.0
d1wf6a_132 DNA topoisomerase II binding protein 1, TopBP1 {Hu 98.06
d1cdza_96 DNA-repair protein XRCC1 {Human (Homo sapiens) [Ta 97.85
d1l7ba_92 NAD+-dependent DNA ligase, domain 4 {Thermus therm 97.84
d1t15a1109 Breast cancer associated protein, BRCA1 {Human (Ho 97.77
d1u7pa_164 Magnesium-dependent phosphatase-1, Mdp1 {Mouse (Mu 97.77
d1t15a2102 Breast cancer associated protein, BRCA1 {Human (Ho 97.3
d2obba1122 Hypothetical protein BT0820 {Bacteroides thetaiota 96.93
d2ah5a1210 predicted phosphatase SP0104 {Streptococcus pneumo 96.77
d1ltqa1149 Polynucleotide kinase, phosphatase domain {Bacteri 96.68
d2feaa1226 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate 96.22
d1in1a_88 DNA ligase III alpha {Human (Homo sapiens) [TaxId: 96.18
d2fpwa1161 Histidine biosynthesis bifunctional protein HisB, 94.57
d1xpja_124 Hypothetical protein VC0232 {Vibrio cholerae [TaxI 94.02
d2hsza1224 Phosphoglycolate phosphatase Gph {Haemophilus somn 93.11
d2hdoa1207 Phosphoglycolate phosphatase {Lactobacillus planta 91.68
d2amya1243 Phosphomannomutase 2 {Human (Homo sapiens) [TaxId: 91.58
d1x42a1230 Hypothetical protein PH0459 {Archaeon Pyrococcus h 91.29
d2o2xa1209 Hypothetical protein Mll2559 {Mesorhizobium loti [ 91.15
d1yj5a1195 5' polynucleotide kinase-3' phosphatase, middle do 91.06
d1te2a_218 Phosphatase YniC {Escherichia coli [TaxId: 562]} 90.91
d2go7a1204 Hypothetical protein SP2064 {Streptococcus pneumon 90.58
d1swva_257 Phosphonoacetaldehyde hydrolase {Bacillus cereus [ 89.39
d1xvia_232 Putative mannosyl-3-phosphoglycerate phosphatase M 89.25
d2gfha1247 N-acylneuraminate-9-phosphatase NANP {Mouse (Mus m 87.32
d1rkqa_271 Hypothetical protein YidA {Escherichia coli [TaxId 86.84
d2fuea1244 Phosphomannomutase 1 {Human (Homo sapiens) [TaxId: 86.28
d1wr8a_230 Phosphoglycolate phosphatase, PGPase {Pyrococcus h 85.45
d2c4na1250 NagD {Escherichia coli [TaxId: 562]} 84.76
d2gmwa1182 D,D-heptose 1,7-bisphosphate phosphatase GmhB {Esc 84.48
d1vjra_261 Hypothetical protein TM1742 {Thermotoga maritima [ 84.38
d1wzca1243 Putative mannosyl-3-phosphoglycerate phosphatase M 83.61
d1zs9a1253 E-1 enzyme {Human(Homo sapiens) [TaxId: 9606]} 82.63
d2hcfa1228 Hypothetical protein CT1708 {Chlorobium tepidum [T 82.44
d1l6ra_225 Phosphoglycolate phosphatase, PGPase {Archaeon The 82.18
d1nrwa_285 Hypothetical protein YwpJ {Bacillus subtilis [TaxI 81.38
d1wvia_253 Putative phosphatase SMU.1415c {Streptococcus muta 80.86
d1nf2a_267 Hypothetical protein TM0651 {Thermotoga maritima [ 80.35
>d1ta0a_ c.108.1.16 (A:) Carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 1, NRAMP1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: NLI interacting factor-like phosphatase
domain: Carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 1, NRAMP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.1e-35  Score=297.08  Aligned_cols=170  Identities=29%  Similarity=0.358  Sum_probs=136.4

Q ss_pred             hhcCCCeEEEEeCCCceeecccCCCCCCchhhhhhhccccccCCCcceeeeeccceEEEEeccCHHHHHHHhhcccEEEE
Q 000959          915 MFSARKLCLVLDLDHTLLNSAKFHEVDPVHDEILRKKEEQDREKPHRHLFRFPHMGMWTKLRPGIWTFLERASKLFEMHL  994 (1208)
Q Consensus       915 LLs~rKLTLVLDLDETLIHSt~~~evdP~~~Eil~~~ee~D~~~P~~~lFrlp~~~~yVKLRPGLdEFLeeLSklYEIVI  994 (1208)
                      ....+|+|||||||||||||+..+.-.+  +..            ....+......+||++|||+++||+.|+++|||+|
T Consensus        10 ~~~~~k~~LVLDLDeTLihs~~~~~~~~--~~~------------~~~~~~~~~~~~~v~~RP~l~eFL~~l~~~yei~I   75 (181)
T d1ta0a_          10 AQDSDKICVVIDLDETLVHSSFKPVNNA--DFI------------IPVEIDGVVHQVYVLKRPHVDEFLQRMGELFECVL   75 (181)
T ss_dssp             GGGTTSCEEEECCBTTTEEEESSCCTTC--SEE------------EEEEETTEEEEEEEEECTTHHHHHHHHHHHSEEEE
T ss_pred             cccCCCeEEEEeCCCCEEccccCCCCCc--cce------------eeecccceeeeeEEecCCCHHHHHHHHHhceEEEE
Confidence            3457899999999999999975321100  000            00111122356899999999999999999999999


Q ss_pred             EcCCcHHHHHHHHHHhcCCCceeeeeEEecCCCCCCCCCCCCCCccccCCCccCCC-CcEEEEcCCCcccccCCCCeEEe
Q 000959          995 YTMGNKLYATEMAKVLDPKGVLFAGRVISRGDDGDPFDGDERVPKSKDLEGVLGME-SAVVIIDDSVRVWPHNKLNLIVV 1073 (1208)
Q Consensus       995 YTAGtreYAd~VLdiLDP~gkLFs~RIiSRDDc~~~fdG~er~~yvKDLsrVLGrD-srVVIIDDrpdVW~~qpdNlI~I 1073 (1208)
                      ||+|++.||++|++.|||++. |.++++ |++|. ...+    .++|||+ .+|++ ++||||||++.+|..|++|+|+|
T Consensus        76 ~Ta~~~~YA~~il~~ldp~~~-~~~~~~-r~~c~-~~~~----~~~KdL~-~l~~~l~~vvivDd~~~~~~~~~~N~I~I  147 (181)
T d1ta0a_          76 FTASLAKYADPVADLLDKWGA-FRARLF-RESCV-FHRG----NYVKDLS-RLGRDLRRVLILDNSPASYVFHPDNAVPV  147 (181)
T ss_dssp             ECSSCHHHHHHHHHHHCSSCC-EEEEEC-GGGSE-EETT----EEECCGG-GSCSCGGGEEEECSCGGGGTTCGGGBCCC
T ss_pred             EcCCcHHHHHHHHHHhccCCc-eeEEEE-eeeee-ecCC----cccccHh-hcCCCHHHeEEEcCChhhhhcCccCeeEe
Confidence            999999999999999999985 455555 77664 2332    5889998 68998 99999999999999999999999


Q ss_pred             ccccccCccccccCCCCCCcccccccCCccchhhhHHHHHHHHHHHhhhcCCCCCCCCHHHHHH
Q 000959         1074 ERYTYFPCSRRQFGLLGPSLLEIDHDERSEDGTLASSLGVIERLHKIFFSHQSLDDVDVRNILA 1137 (1208)
Q Consensus      1074 kpY~YF~~s~rQfGlpgPSLlEid~DEdpeDg~L~sLL~~LerIHq~FF~~~dL~~~DVR~ILr 1137 (1208)
                      ++|..                      +++|.+|..++++|++|++         ..|||++|+
T Consensus       148 ~~f~~----------------------~~~D~eL~~l~~~L~~l~~---------~~DVR~~l~  180 (181)
T d1ta0a_         148 ASWFD----------------------NMSDTELHDLLPFFEQLSR---------VDDVYSVLR  180 (181)
T ss_dssp             CCCSS----------------------CTTCCHHHHHHHHHHHHTT---------CSCHHHHHC
T ss_pred             cCcCC----------------------CCCcHHHHHHHHHHHHHcc---------CCcHHHHhc
Confidence            99962                      4678999999999999985         789999986
>d1wf6a_ c.15.1.5 (A:) DNA topoisomerase II binding protein 1, TopBP1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1cdza_ c.15.1.1 (A:) DNA-repair protein XRCC1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1l7ba_ c.15.1.2 (A:) NAD+-dependent DNA ligase, domain 4 {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1t15a1 c.15.1.3 (A:1649-1757) Breast cancer associated protein, BRCA1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1u7pa_ c.108.1.17 (A:) Magnesium-dependent phosphatase-1, Mdp1 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1t15a2 c.15.1.3 (A:1758-1859) Breast cancer associated protein, BRCA1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2obba1 c.108.1.25 (A:1-122) Hypothetical protein BT0820 {Bacteroides thetaiotaomicron [TaxId: 818]} Back     information, alignment and structure
>d2ah5a1 c.108.1.6 (A:1-210) predicted phosphatase SP0104 {Streptococcus pneumoniae [TaxId: 1313]} Back     information, alignment and structure
>d1ltqa1 c.108.1.9 (A:153-301) Polynucleotide kinase, phosphatase domain {Bacteriophage T4 [TaxId: 10665]} Back     information, alignment and structure
>d2feaa1 c.108.1.20 (A:2-227) 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase MtnX {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1in1a_ c.15.1.2 (A:) DNA ligase III alpha {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2fpwa1 c.108.1.19 (A:3-163) Histidine biosynthesis bifunctional protein HisB, phosphatase domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1xpja_ c.108.1.18 (A:) Hypothetical protein VC0232 {Vibrio cholerae [TaxId: 666]} Back     information, alignment and structure
>d2hsza1 c.108.1.6 (A:1-224) Phosphoglycolate phosphatase Gph {Haemophilus somnus [TaxId: 731]} Back     information, alignment and structure
>d2hdoa1 c.108.1.6 (A:1-207) Phosphoglycolate phosphatase {Lactobacillus plantarum [TaxId: 1590]} Back     information, alignment and structure
>d2amya1 c.108.1.10 (A:4-246) Phosphomannomutase 2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1x42a1 c.108.1.1 (A:1-230) Hypothetical protein PH0459 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d2o2xa1 c.108.1.19 (A:8-216) Hypothetical protein Mll2559 {Mesorhizobium loti [TaxId: 381]} Back     information, alignment and structure
>d1yj5a1 c.108.1.9 (A:144-338) 5' polynucleotide kinase-3' phosphatase, middle domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1te2a_ c.108.1.6 (A:) Phosphatase YniC {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2go7a1 c.108.1.6 (A:3-206) Hypothetical protein SP2064 {Streptococcus pneumoniae [TaxId: 1313]} Back     information, alignment and structure
>d1swva_ c.108.1.3 (A:) Phosphonoacetaldehyde hydrolase {Bacillus cereus [TaxId: 1396]} Back     information, alignment and structure
>d1xvia_ c.108.1.10 (A:) Putative mannosyl-3-phosphoglycerate phosphatase MPGP (YedP) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2gfha1 c.108.1.6 (A:1-247) N-acylneuraminate-9-phosphatase NANP {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1rkqa_ c.108.1.10 (A:) Hypothetical protein YidA {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2fuea1 c.108.1.10 (A:13-256) Phosphomannomutase 1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wr8a_ c.108.1.10 (A:) Phosphoglycolate phosphatase, PGPase {Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d2c4na1 c.108.1.14 (A:1-250) NagD {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2gmwa1 c.108.1.19 (A:24-205) D,D-heptose 1,7-bisphosphate phosphatase GmhB {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1vjra_ c.108.1.14 (A:) Hypothetical protein TM1742 {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1wzca1 c.108.1.10 (A:1-243) Putative mannosyl-3-phosphoglycerate phosphatase MPGP (YedP) {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d1zs9a1 c.108.1.22 (A:4-256) E-1 enzyme {Human(Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2hcfa1 c.108.1.6 (A:2-229) Hypothetical protein CT1708 {Chlorobium tepidum [TaxId: 1097]} Back     information, alignment and structure
>d1l6ra_ c.108.1.10 (A:) Phosphoglycolate phosphatase, PGPase {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Back     information, alignment and structure
>d1nrwa_ c.108.1.10 (A:) Hypothetical protein YwpJ {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1wvia_ c.108.1.14 (A:) Putative phosphatase SMU.1415c {Streptococcus mutans [TaxId: 1309]} Back     information, alignment and structure
>d1nf2a_ c.108.1.10 (A:) Hypothetical protein TM0651 {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure