Citrus Sinensis ID: 000979
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
ID ![]() | Alignment graph ![]() | Length ![]() |
Definition ![]() |
RBH(Q2H) ![]() |
RBH(H2Q) ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 1202 | 2.2.26 [Sep-21-2011] | |||||||
| Q76CU2 | 1434 | Pleiotropic drug resistan | N/A | no | 0.969 | 0.812 | 0.722 | 0.0 | |
| Q9M9E1 | 1423 | ABC transporter G family | yes | no | 0.965 | 0.815 | 0.698 | 0.0 | |
| Q0JLC5 | 1457 | Pleiotropic drug resistan | yes | no | 0.980 | 0.809 | 0.707 | 0.0 | |
| A2WSH0 | 1457 | Pleiotropic drug resistan | N/A | no | 0.980 | 0.809 | 0.706 | 0.0 | |
| Q8GU92 | 1464 | Probable pleiotropic drug | no | no | 0.981 | 0.806 | 0.710 | 0.0 | |
| Q7PC80 | 1468 | Probable pleiotropic drug | no | no | 0.982 | 0.804 | 0.696 | 0.0 | |
| Q8GU89 | 1450 | Pleiotropic drug resistan | no | no | 0.983 | 0.815 | 0.691 | 0.0 | |
| Q949G3 | 1436 | Pleiotropic drug resistan | N/A | no | 0.966 | 0.809 | 0.712 | 0.0 | |
| Q8GU88 | 1444 | Putative pleiotropic drug | no | no | 0.981 | 0.817 | 0.687 | 0.0 | |
| O24367 | 1441 | Pleiotropic drug resistan | N/A | no | 0.977 | 0.815 | 0.690 | 0.0 |
| >sp|Q76CU2|PDR1_TOBAC Pleiotropic drug resistance protein 1 OS=Nicotiana tabacum GN=PDR1 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 1807 bits (4681), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 863/1194 (72%), Positives = 993/1194 (83%), Gaps = 29/1194 (2%)
Query: 9 EMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEM 68
EML EL+RREKAA IKPD DID+YMKA ATEGQEANV+TDY LK+LGLD+CADTMVGD+M
Sbjct: 270 EMLAELSRREKAANIKPDADIDIYMKAAATEGQEANVVTDYVLKILGLDICADTMVGDDM 329
Query: 69 IRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVIS 128
IRGISGGQKKRVTTGEM+VGP+ ALFMDEISTGLDSSTT+ IVN LRQ++ I GTAVIS
Sbjct: 330 IRGISGGQKKRVTTGEMLVGPSKALFMDEISTGLDSSTTYSIVNSLRQSVQILKGTAVIS 389
Query: 129 LLQPAPETYDLFDDIILLSDGQIVYQGPRELVLEFFASMGFRCPKRKGVADFLQEVTSRK 188
LLQPAPETY+LFDDIILLSDG IVYQGPR+ VLEFF SMGF+CP+RKGVADFLQEVTS+K
Sbjct: 390 LLQPAPETYNLFDDIILLSDGYIVYQGPRDDVLEFFESMGFKCPQRKGVADFLQEVTSKK 449
Query: 189 DQRQYWAHKEKPYRFVTVQEFAEAFQSFHVGQKISDELRTPFDKSKSHRAALTTETYGVG 248
DQ+QYW+ + +PYRF+T +EFAEA+QSFHVG+K+ DEL TPFDK+K H AALT E YG+G
Sbjct: 450 DQQQYWSKRNEPYRFITSKEFAEAYQSFHVGRKLGDELATPFDKTKCHPAALTNEKYGIG 509
Query: 249 KRELLKANISRELLLMKRNSFVYIFKLIQIAFVAVVYMTLFLRTKMHKDTVTDGGIFAGA 308
K+ELLK RELLLMKRNSFVY+FK Q+ +A++ MTLF RT+M +DT DGGI+AGA
Sbjct: 510 KKELLKVCTERELLLMKRNSFVYMFKFSQLTIMALITMTLFFRTEMPRDTTDDGGIYAGA 569
Query: 309 TFFAITMVNFNGFSEISMTIAKLPVFYKQRDFRFFPPWAYAIPSWILKIPVSFLEVAVWV 368
FF + M+ FNG SE++MTI KLPVFYKQRD FFP WAYAIPSWILKIPV+ +EV +WV
Sbjct: 570 LFFVVIMIMFNGMSELAMTIFKLPVFYKQRDLLFFPSWAYAIPSWILKIPVTLVEVGLWV 629
Query: 369 FLSYYVVGYDSNAGRFFKQYALLLGVNQMASALFRFIAVTGRNMVVANTFGSFALLVLLS 428
L+YYV+G+D N RF KQ+ LL+ VNQMAS +FRFI GR M VA+TFGSFALL+ +
Sbjct: 630 ILTYYVIGFDPNITRFLKQFLLLIVVNQMASGMFRFIGAVGRTMGVASTFGSFALLLQFA 689
Query: 429 LGGFILSREDIKKWWKWAYWCSPLTYAQNAIVANEFLGHSWKKFTQDSSETLGVQVLKSR 488
LGGF+LSR+D+K WW W YW SP+ Y+ N+I+ NEF G W +ETLG V+KSR
Sbjct: 690 LGGFVLSRDDVKSWWIWGYWISPMMYSVNSILVNEFDGKKWNHIVPGGNETLGSTVVKSR 749
Query: 489 GFFAHEYWYWLGLGALFGFVLLLNFAYTLALTFLDPFEKPRAVITEEIESNEQDDRIGGN 548
GFF YWYW+G+GAL GF ++ NF Y+LAL +L+PF+KP+AV+ E+ E+ E
Sbjct: 750 GFFPEAYWYWIGVGALVGFTVVFNFCYSLALAYLNPFDKPQAVLPEDGENAEN------- 802
Query: 549 VQLSTLGGSSNHNTRSGSTDDIRGQQSSSQSLSLAEAEASRPKKKGMVLPFEPHSLTFDE 608
G S+ T + D I Q++ KKGMVLPFEPHS+TFD+
Sbjct: 803 ------GEVSSQITSTDGGDSISESQNN---------------KKGMVLPFEPHSITFDD 841
Query: 609 VVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG 668
VVYSVDMP+EMK QG ED+LVLL GVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG
Sbjct: 842 VVYSVDMPQEMKEQGAGEDRLVLLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG 901
Query: 669 GYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRK 728
GYI G I ISGYPKKQETFARISGYCEQNDIHSP+VT+YESL++SAWLRL +VD +TRK
Sbjct: 902 GYIDGEIKISGYPKKQETFARISGYCEQNDIHSPYVTVYESLVYSAWLRLPQDVDEKTRK 961
Query: 729 MFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 788
MF+DEVMELVEL PLR +LVGLPGV+GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA
Sbjct: 962 MFVDEVMELVELGPLRSALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 1021
Query: 789 RAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLGRHSCHL 848
RAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLGRHSCHL
Sbjct: 1022 RAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLGRHSCHL 1081
Query: 849 ISYFEAIPGVQKIKDGYNPATWMLEVSAASQELALGIDFTEHYKRSDLYRRNKALIEDLS 908
I YFE+ PGV KIK+GYNPATWMLEV+A++QE+ LGIDFTE YK SDLYRRNKALI +L
Sbjct: 1082 IKYFESNPGVAKIKEGYNPATWMLEVTASAQEMMLGIDFTEVYKNSDLYRRNKALISELG 1141
Query: 909 RPPPGSKDLYFPTQFSQSSWIQFVACLWKQHWSYWRNPPYTAVRFFFTAFIALLFGSLFW 968
P PGSKDL+F TQ+SQS W Q VACLWKQHWSYWRNP YTAVRF FT FIAL+FG++FW
Sbjct: 1142 VPRPGSKDLHFETQYSQSFWTQCVACLWKQHWSYWRNPAYTAVRFIFTTFIALIFGTMFW 1201
Query: 969 DLGGRTKRNQDLFNAMGSMFTAVLFLGVQYCSSVQPIVSVERTVFYREKAAGMYAGIPWA 1028
DLG + ++QDL NAMGSM+ AVLFLGVQ SSVQP+V++ERTVFYRE+AAGMY+ IP+A
Sbjct: 1202 DLGTKVSKSQDLLNAMGSMYAAVLFLGVQNASSVQPVVAIERTVFYRERAAGMYSAIPYA 1261
Query: 1029 LAQVMIEIPYILVQSVVYGAIVYAMIGFEWTAAKFFWYIFFMYFTLLFFTFYGMMAVALT 1088
QV IEIPYI VQSV YG IVYAMIGFEW KFFWY+F M+FTLL+FTFYGMM VA+T
Sbjct: 1262 FGQVSIEIPYIFVQSVFYGIIVYAMIGFEWDVGKFFWYLFIMFFTLLYFTFYGMMGVAVT 1321
Query: 1089 PNHHIAAIVSTLFYGLWNVFSGFIIPRPRIPIWWRWYYWANPIAWTLYGLVASQFGDMDD 1148
PN ++A+IV+ FYG+WN+FSGFIIPRPR+P+WWRWYYWANP+AWTLYGLVASQFGD+
Sbjct: 1322 PNQNVASIVAAFFYGVWNLFSGFIIPRPRMPVWWRWYYWANPVAWTLYGLVASQFGDIQT 1381
Query: 1149 KKMDTGETVKQFLKDYFDFKHDFLGVVAAVLVVFAVLFGFLFALGIKMFNFQRR 1202
K D ETV+QFL+ YF FKHDFLGVVAAVL + +F F FA IK FNFQRR
Sbjct: 1382 KLSDN-ETVEQFLRRYFGFKHDFLGVVAAVLTAYVFMFAFTFAFAIKAFNFQRR 1434
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May be a general defense protein. Nicotiana tabacum (taxid: 4097) |
| >sp|Q9M9E1|AB40G_ARATH ABC transporter G family member 40 OS=Arabidopsis thaliana GN=ABCG40 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 1781 bits (4612), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 834/1194 (69%), Positives = 996/1194 (83%), Gaps = 33/1194 (2%)
Query: 9 EMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEM 68
+MLTELARREK A IKPDPDID++MKA++T G++ NV+TDY LK+LGL+VCADTMVGD+M
Sbjct: 263 DMLTELARREKEANIKPDPDIDIFMKAMSTAGEKTNVMTDYILKILGLEVCADTMVGDDM 322
Query: 69 IRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVIS 128
+RGISGGQKKRVTTGEM+VGP+ ALFMDEISTGLDSSTT+QIVN LR +HI +GTA+IS
Sbjct: 323 LRGISGGQKKRVTTGEMLVGPSRALFMDEISTGLDSSTTYQIVNSLRNYVHIFNGTALIS 382
Query: 129 LLQPAPETYDLFDDIILLSDGQIVYQGPRELVLEFFASMGFRCPKRKGVADFLQEVTSRK 188
LLQPAPET++LFDDIIL+++G+I+Y+GPR+ V+EFF +MGF+CP RKGVADFLQEVTS+K
Sbjct: 383 LLQPAPETFNLFDDIILIAEGEIIYEGPRDHVVEFFETMGFKCPPRKGVADFLQEVTSKK 442
Query: 189 DQRQYWAHKEKPYRFVTVQEFAEAFQSFHVGQKISDELRTPFDKSKSHRAALTTETYGVG 248
DQ QYWA +++PYRF+ V+EFAEAFQSFHVG++I DEL PFDK+KSH AALTT+ YGVG
Sbjct: 443 DQMQYWARRDEPYRFIRVREFAEAFQSFHVGRRIGDELALPFDKTKSHPAALTTKKYGVG 502
Query: 249 KRELLKANISRELLLMKRNSFVYIFKLIQIAFVAVVYMTLFLRTKMHKDTVTDGGIFAGA 308
+EL+K + SRE LLMKRNSFVY FK Q+ +A + MTLF RT+M K T DG ++ GA
Sbjct: 503 IKELVKTSFSREYLLMKRNSFVYYFKFGQLLVMAFLTMTLFFRTEMQKKTEVDGSLYTGA 562
Query: 309 TFFAITMVNFNGFSEISMTIAKLPVFYKQRDFRFFPPWAYAIPSWILKIPVSFLEVAVWV 368
FF + M+ FNG SE+SMTIAKLPVFYKQRD F+P W Y++P W+LKIP+SF+E A+
Sbjct: 563 LFFILMMLMFNGMSELSMTIAKLPVFYKQRDLLFYPAWVYSLPPWLLKIPISFMEAALTT 622
Query: 369 FLSYYVVGYDSNAGRFFKQYALLLGVNQMASALFRFIAVTGRNMVVANTFGSFALLVLLS 428
F++YYV+G+D N GR FKQY LL+ +NQMASALF+ +A GRNM+VANTFG+FA+LV +
Sbjct: 623 FITYYVIGFDPNVGRLFKQYILLVLMNQMASALFKMVAALGRNMIVANTFGAFAMLVFFA 682
Query: 429 LGGFILSREDIKKWWKWAYWCSPLTYAQNAIVANEFLGHSWKKFTQDSSETLGVQVLKSR 488
LGG +LSR+DIKKWW W YW SP+ Y QNAI+ANEF GHSW + ++SSETLGV LKSR
Sbjct: 683 LGGVVLSRDDIKKWWIWGYWISPIMYGQNAILANEFFGHSWSRAVENSSETLGVTFLKSR 742
Query: 489 GFFAHEYWYWLGLGALFGFVLLLNFAYTLALTFLDPFEKPRAVITEEIESNEQDDRIGGN 548
GF H YWYW+G GAL GFV+L NF +TLALTFL+ KP+AVI EE S+E
Sbjct: 743 GFLPHAYWYWIGTGALLGFVVLFNFGFTLALTFLNSLGKPQAVIAEEPASDET------- 795
Query: 549 VQLSTLGGSSNHNTRSGSTDDIRGQQSSSQSLSLAEAEASRPKKKGMVLPFEPHSLTFDE 608
+ S++S + EA A+ KK+GMVLPFEPHS+TFD
Sbjct: 796 ------------------------ELQSARSEGVVEAGAN--KKRGMVLPFEPHSITFDN 829
Query: 609 VVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG 668
VVYSVDMP+EM QG ED+LVLL GV+GAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG
Sbjct: 830 VVYSVDMPQEMIEQGTQEDRLVLLKGVNGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG 889
Query: 669 GYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRK 728
GYI GNITISGYPK Q+TFARISGYCEQ DIHSP VT+YESL++SAWLRL EVD RK
Sbjct: 890 GYIDGNITISGYPKNQQTFARISGYCEQTDIHSPHVTVYESLVYSAWLRLPKEVDKNKRK 949
Query: 729 MFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 788
+FI+EVMELVEL PLRQ+LVGLPG SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA
Sbjct: 950 IFIEEVMELVELTPLRQALVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 1009
Query: 789 RAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLGRHSCHL 848
RAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFL+KRGG+EIYVGPLG S HL
Sbjct: 1010 RAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLLKRGGEEIYVGPLGHESTHL 1069
Query: 849 ISYFEAIPGVQKIKDGYNPATWMLEVSAASQELALGIDFTEHYKRSDLYRRNKALIEDLS 908
I+YFE+I G+ KI +GYNPATWMLEVS SQE ALG+DF + YK S+LY+RNK LI++LS
Sbjct: 1070 INYFESIQGINKITEGYNPATWMLEVSTTSQEAALGVDFAQVYKNSELYKRNKELIKELS 1129
Query: 909 RPPPGSKDLYFPTQFSQSSWIQFVACLWKQHWSYWRNPPYTAVRFFFTAFIALLFGSLFW 968
+P PGSKDLYFPTQ+SQS Q +A LWKQHWSYWRNPPYTAVRF FT IAL+FG++FW
Sbjct: 1130 QPAPGSKDLYFPTQYSQSFLTQCMASLWKQHWSYWRNPPYTAVRFLFTIGIALMFGTMFW 1189
Query: 969 DLGGRTKRNQDLFNAMGSMFTAVLFLGVQYCSSVQPIVSVERTVFYREKAAGMYAGIPWA 1028
DLGG+TK QDL NAMGSM+TAVLFLG+Q +SVQP+V+VERTVFYRE+AAGMY+ +P+A
Sbjct: 1190 DLGGKTKTRQDLSNAMGSMYTAVLFLGLQNAASVQPVVNVERTVFYREQAAGMYSAMPYA 1249
Query: 1029 LAQVMIEIPYILVQSVVYGAIVYAMIGFEWTAAKFFWYIFFMYFTLLFFTFYGMMAVALT 1088
AQV IEIPY+LVQ++VYG IVYAMIGFEWTA KFFWY+FFMY + L FTFYGMMAVA+T
Sbjct: 1250 FAQVFIEIPYVLVQAIVYGLIVYAMIGFEWTAVKFFWYLFFMYGSFLTFTFYGMMAVAMT 1309
Query: 1089 PNHHIAAIVSTLFYGLWNVFSGFIIPRPRIPIWWRWYYWANPIAWTLYGLVASQFGDMDD 1148
PNHHIA++VS+ FYG+WN+FSGF+IPRP +P+WW WYYW P+AWTLYGL+ASQFGD+ +
Sbjct: 1310 PNHHIASVVSSAFYGIWNLFSGFLIPRPSMPVWWEWYYWLCPVAWTLYGLIASQFGDITE 1369
Query: 1149 KKMDTGETVKQFLKDYFDFKHDFLGVVAAVLVVFAVLFGFLFALGIKMFNFQRR 1202
D+ +VKQF+++++ ++ FLGVVAA+ V+F +LF +FA+GIK FNFQ+R
Sbjct: 1370 PMADSNMSVKQFIREFYGYREGFLGVVAAMNVIFPLLFAVIFAIGIKSFNFQKR 1423
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May be a general defense protein (By similarity). Functions as a pump to exclude Pb(2+) ions and/or Pb(2+)-containing toxic compounds from the cytoplasm. Contributes to Pb(2+) ions resistance. Confers some resistance to the terpene sclareol. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q0JLC5|PDR3_ORYSJ Pleiotropic drug resistance protein 3 OS=Oryza sativa subsp. japonica GN=PDR3 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 1778 bits (4605), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 849/1200 (70%), Positives = 986/1200 (82%), Gaps = 21/1200 (1%)
Query: 9 EMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEM 68
+MLTEL+RREKAA IKPD DID +MKA A GQEANV TDY LK+LGL++CADTMVGDEM
Sbjct: 273 DMLTELSRREKAANIKPDADIDAFMKAAAMGGQEANVNTDYILKILGLEICADTMVGDEM 332
Query: 69 IRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVIS 128
+RGISGGQ+KRVTTGEM+VGPA ALFMDEISTGLDSSTTFQIVN LRQ +HI GTAVIS
Sbjct: 333 LRGISGGQRKRVTTGEMLVGPARALFMDEISTGLDSSTTFQIVNSLRQTVHILGGTAVIS 392
Query: 129 LLQPAPETYDLFDDIILLSDGQIVYQGPRELVLEFFASMGFRCPKRKGVADFLQEVTSRK 188
LLQPAPETY+LFDDIILLSDGQIVYQGPRE VLEFF SMGF+CP RKGVADFLQEVTS+K
Sbjct: 393 LLQPAPETYNLFDDIILLSDGQIVYQGPREDVLEFFESMGFKCPDRKGVADFLQEVTSKK 452
Query: 189 DQRQYWAHKEKPYRFVTVQEFAEAFQSFHVGQKISDELRTPFDKSKSHRAALTTETYGVG 248
DQRQYWA +KPYRFVTV+EF AFQSFH G+ I++EL PFDKSKSH AAL T YG
Sbjct: 453 DQRQYWARHDKPYRFVTVKEFVSAFQSFHTGRAIANELAVPFDKSKSHPAALATTRYGAP 512
Query: 249 KRELLKANISRELLLMKRNSFVYIFKLIQIAFVAVVYMTLFLRTKMHKDTVTDGGIFAGA 308
+ELLKANI RE+LLMKRNSFVY+F+ Q+ V+++ MTLF RTKM +D+VT GGI+ GA
Sbjct: 513 GKELLKANIDREILLMKRNSFVYMFRTFQLMVVSLIAMTLFFRTKMKRDSVTSGGIYMGA 572
Query: 309 TFFAITMVNFNGFSEISMTIAKLPVFYKQRDFRFFPPWAYAIPSWILKIPVSFLEVAVWV 368
FF + M+ FNGFSE+++T+ KLPVF+KQRD F+P W+Y IPSWILKIP++F+EV +V
Sbjct: 573 LFFGVLMIMFNGFSELALTVFKLPVFFKQRDLLFYPAWSYTIPSWILKIPITFIEVGGYV 632
Query: 369 FLSYYVVGYDSNAGRFFKQYALLLGVNQMASALFRFIAVTGRNMVVANTFGSFALLVLLS 428
FL+YYV+G+DSN G FFKQY L+L +NQMA +LFRFI RNM+VAN F SF LL+ +
Sbjct: 633 FLTYYVIGFDSNVGSFFKQYLLMLAINQMAGSLFRFIGGAARNMIVANVFASFMLLIFMV 692
Query: 429 LGGFILSREDIKKWWKWAYWCSPLTYAQNAIVANEFLGHSWKKFTQDSS--ETLGVQVLK 486
LGGFIL+RE +KKWW W YW SP+ YAQNAI NE +GHSW K S+ ETLGVQVLK
Sbjct: 693 LGGFILAREQVKKWWIWGYWISPMMYAQNAISVNELMGHSWNKIVNSSASNETLGVQVLK 752
Query: 487 SRGFFAHEYWYWLGLGALFGFVLLLNFAYTLALTFLDPFEKPRAVITEEIESNEQ----D 542
SRG F WYW+G GA+ GF +L N +TLALT+L P+ R ++EE E E+ +
Sbjct: 753 SRGVFPEARWYWIGFGAMIGFTILFNALFTLALTYLRPYGNSRQSVSEE-ELKEKRANLN 811
Query: 543 DRIGGNVQLSTLGGSSNHNTRSGSTDDIRGQQSSSQSLSLAEAEASRPKKKGMVLPFEPH 602
I G+V LS+ GS+ +G+ +D S + + ++GMVLPF P
Sbjct: 812 GEIVGDVHLSS--GSTRRPMGNGTEND-----------STIVDDDTEVTQRGMVLPFTPL 858
Query: 603 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVL 662
SL+FD V YSVDMP+EMK QGV +D+L LL GVSG+FRPGVLTALMGVSGAGKTTLMDVL
Sbjct: 859 SLSFDNVRYSVDMPQEMKAQGVADDRLELLKGVSGSFRPGVLTALMGVSGAGKTTLMDVL 918
Query: 663 AGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEV 722
AGRKTGGYI G+I ISGYPKKQETFAR+SGYCEQNDIHSP VT+YESLLFSAWLRL +V
Sbjct: 919 AGRKTGGYIEGSINISGYPKKQETFARVSGYCEQNDIHSPQVTVYESLLFSAWLRLPEDV 978
Query: 723 DSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEP 782
DS TRKMFI+EVMELVEL LR +LVGLPGV+GLSTEQRKRLTIAVELVANPSIIFMDEP
Sbjct: 979 DSNTRKMFIEEVMELVELKSLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEP 1038
Query: 783 TSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLG 842
TSGLDARAAAIVMRTVRNTV+TGRTVVCTIHQPSIDIFEAFDELFLMKRGG+EIY GPLG
Sbjct: 1039 TSGLDARAAAIVMRTVRNTVNTGRTVVCTIHQPSIDIFEAFDELFLMKRGGEEIYAGPLG 1098
Query: 843 RHSCHLISYFEAIPGVQKIKDGYNPATWMLEVSAASQELALGIDFTEHYKRSDLYRRNKA 902
HS LI YFE+IPGV KIKDGYNPATWMLEV+ QE ALG+DF++ YK+S+LY+RNKA
Sbjct: 1099 HHSSELIKYFESIPGVSKIKDGYNPATWMLEVTTIGQEQALGVDFSDIYKKSELYQRNKA 1158
Query: 903 LIEDLSRPPPGSKDLYFPTQFSQSSWIQFVACLWKQHWSYWRNPPYTAVRFFFTAFIALL 962
LI+DLS+P P S DLYFPTQ+SQSS Q +ACLWKQ+ SYWRNPPY AVRFFFT IALL
Sbjct: 1159 LIKDLSQPAPDSSDLYFPTQYSQSSLTQCMACLWKQNLSYWRNPPYNAVRFFFTTVIALL 1218
Query: 963 FGSLFWDLGGRTKRNQDLFNAMGSMFTAVLFLGVQYCSSVQPIVSVERTVFYREKAAGMY 1022
FG++FWDLGG+ ++QDLFNAMGSM+ AVLF+GV C+SVQP+V+VERTVFYRE+AAGMY
Sbjct: 1219 FGTIFWDLGGKVTKSQDLFNAMGSMYAAVLFIGVMNCTSVQPVVAVERTVFYRERAAGMY 1278
Query: 1023 AGIPWALAQVMIEIPYILVQSVVYGAIVYAMIGFEWTAAKFFWYIFFMYFTLLFFTFYGM 1082
+ P+A QV+IEIPY LVQ+ VYG IVYAMIGFEWTAAKFFWY+FFM FTLL+FTFYGM
Sbjct: 1279 SAFPYAFGQVVIEIPYTLVQATVYGIIVYAMIGFEWTAAKFFWYLFFMVFTLLYFTFYGM 1338
Query: 1083 MAVALTPNHHIAAIVSTLFYGLWNVFSGFIIPRPRIPIWWRWYYWANPIAWTLYGLVASQ 1142
MAV LTPN+HIA+IVS+ FY +WN+FSGF+IPRPR+PIWWRWY WA P+AWTLYGLV SQ
Sbjct: 1339 MAVGLTPNYHIASIVSSAFYAIWNLFSGFVIPRPRVPIWWRWYCWACPVAWTLYGLVVSQ 1398
Query: 1143 FGDMDDKKMDTGETVKQFLKDYFDFKHDFLGVVAAVLVVFAVLFGFLFALGIKMFNFQRR 1202
FGD+ + M+ G VK F+++YF FKH +LG VA V+ FA LF LF I FNFQ+R
Sbjct: 1399 FGDI-ETPMEDGTPVKVFVENYFGFKHSWLGWVATVVAAFAFLFASLFGFAIMKFNFQKR 1457
|
May be a general defense protein. Oryza sativa subsp. japonica (taxid: 39947) |
| >sp|A2WSH0|PDR3_ORYSI Pleiotropic drug resistance protein 3 OS=Oryza sativa subsp. indica GN=PDR3 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 1776 bits (4599), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 848/1200 (70%), Positives = 985/1200 (82%), Gaps = 21/1200 (1%)
Query: 9 EMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEM 68
+MLTEL+RREKAA IKPD DID +MKA A GQEANV TDY LK+LGL++CADTMVGDEM
Sbjct: 273 DMLTELSRREKAANIKPDADIDAFMKAAAMGGQEANVNTDYILKILGLEICADTMVGDEM 332
Query: 69 IRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVIS 128
+RGISGGQ+KRVTTGEM+VGPA ALFMDEISTGLDSSTTFQIVN LRQ +HI GTAVIS
Sbjct: 333 LRGISGGQRKRVTTGEMLVGPARALFMDEISTGLDSSTTFQIVNSLRQTVHILGGTAVIS 392
Query: 129 LLQPAPETYDLFDDIILLSDGQIVYQGPRELVLEFFASMGFRCPKRKGVADFLQEVTSRK 188
LLQPAPETY+LFDDIILLSDGQIVYQGPRE VLEFF S GF+CP RKGVADFLQEVTS+K
Sbjct: 393 LLQPAPETYNLFDDIILLSDGQIVYQGPREDVLEFFESTGFKCPDRKGVADFLQEVTSKK 452
Query: 189 DQRQYWAHKEKPYRFVTVQEFAEAFQSFHVGQKISDELRTPFDKSKSHRAALTTETYGVG 248
DQRQYWA +KPYRFVTV+EF AFQSFH G+ I++EL PFDKSKSH AAL T YG
Sbjct: 453 DQRQYWARHDKPYRFVTVKEFVSAFQSFHTGRAIANELAVPFDKSKSHPAALATTRYGAP 512
Query: 249 KRELLKANISRELLLMKRNSFVYIFKLIQIAFVAVVYMTLFLRTKMHKDTVTDGGIFAGA 308
+ELLKANI RE+LLMKRNSFVY+F+ Q+ V+++ MTLF RTKM +D+VT GGI+ GA
Sbjct: 513 GKELLKANIDREILLMKRNSFVYMFRTFQLMVVSLIAMTLFFRTKMKRDSVTSGGIYMGA 572
Query: 309 TFFAITMVNFNGFSEISMTIAKLPVFYKQRDFRFFPPWAYAIPSWILKIPVSFLEVAVWV 368
FF + M+ FNGFSE+++T+ KLPVF+KQRD F+P W+Y IPSWILKIP++F+EV +V
Sbjct: 573 LFFGVLMIMFNGFSELALTVFKLPVFFKQRDLLFYPAWSYTIPSWILKIPITFIEVGGYV 632
Query: 369 FLSYYVVGYDSNAGRFFKQYALLLGVNQMASALFRFIAVTGRNMVVANTFGSFALLVLLS 428
FL+YYV+G+DSN G FFKQY L+L +NQMA +LFRFI RNM+VAN F SF LL+ +
Sbjct: 633 FLTYYVIGFDSNVGSFFKQYLLMLAINQMAGSLFRFIGGAARNMIVANVFASFMLLIFMV 692
Query: 429 LGGFILSREDIKKWWKWAYWCSPLTYAQNAIVANEFLGHSWKKFTQDSS--ETLGVQVLK 486
LGGFIL+RE +KKWW W YW SP+ YAQNAI NE +GHSW K S+ ETLGVQVLK
Sbjct: 693 LGGFILAREQVKKWWIWGYWISPMMYAQNAISVNELMGHSWNKIVNSSASNETLGVQVLK 752
Query: 487 SRGFFAHEYWYWLGLGALFGFVLLLNFAYTLALTFLDPFEKPRAVITEEIESNEQ----D 542
SRG F WYW+G GA+ GF +L N +TLALT+L P+ R ++EE E E+ +
Sbjct: 753 SRGVFPEARWYWIGFGAMIGFTILFNALFTLALTYLRPYGNSRQSVSEE-ELKEKRANLN 811
Query: 543 DRIGGNVQLSTLGGSSNHNTRSGSTDDIRGQQSSSQSLSLAEAEASRPKKKGMVLPFEPH 602
I G+V LS+ GS+ +G+ +D S + + ++GMVLPF P
Sbjct: 812 GEIVGDVHLSS--GSTRRPMGNGTEND-----------STIVDDDTEVTQRGMVLPFTPL 858
Query: 603 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVL 662
SL+FD V YSVDMP+EMK QGV +D+L LL GVSG+FRPGVLTALMGVSGAGKTTLMDVL
Sbjct: 859 SLSFDNVRYSVDMPQEMKAQGVADDRLELLKGVSGSFRPGVLTALMGVSGAGKTTLMDVL 918
Query: 663 AGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEV 722
AGRKTGGYI G+I ISGYPKKQETFAR+SGYCEQNDIHSP VT+YESLLFSAWLRL +V
Sbjct: 919 AGRKTGGYIEGSINISGYPKKQETFARVSGYCEQNDIHSPQVTVYESLLFSAWLRLPEDV 978
Query: 723 DSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEP 782
DS TRKMFI+EVMELVEL LR +LVGLPGV+GLSTEQRKRLTIAVELVANPSIIFMDEP
Sbjct: 979 DSNTRKMFIEEVMELVELKSLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEP 1038
Query: 783 TSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLG 842
TSGLDARAAAIVMRTVRNTV+TGRTVVCTIHQPSIDIFEAFDELFLMKRGG+EIY GPLG
Sbjct: 1039 TSGLDARAAAIVMRTVRNTVNTGRTVVCTIHQPSIDIFEAFDELFLMKRGGEEIYAGPLG 1098
Query: 843 RHSCHLISYFEAIPGVQKIKDGYNPATWMLEVSAASQELALGIDFTEHYKRSDLYRRNKA 902
HS LI YFE+IPGV KIKDGYNPATWMLEV+ QE ALG+DF++ YK+S+LY+RNKA
Sbjct: 1099 HHSSELIKYFESIPGVSKIKDGYNPATWMLEVTTIGQEQALGVDFSDIYKKSELYQRNKA 1158
Query: 903 LIEDLSRPPPGSKDLYFPTQFSQSSWIQFVACLWKQHWSYWRNPPYTAVRFFFTAFIALL 962
LI+DLS+P P S DLYFPTQ+SQSS Q +ACLWKQ+ SYWRNPPY AVRFFFT IALL
Sbjct: 1159 LIKDLSQPAPDSSDLYFPTQYSQSSLTQCMACLWKQNLSYWRNPPYNAVRFFFTTVIALL 1218
Query: 963 FGSLFWDLGGRTKRNQDLFNAMGSMFTAVLFLGVQYCSSVQPIVSVERTVFYREKAAGMY 1022
FG++FWDLGG+ ++QDLFNAMGSM+ AVLF+GV C+SVQP+V+VERTVFYRE+AAGMY
Sbjct: 1219 FGTIFWDLGGKVTKSQDLFNAMGSMYAAVLFIGVMNCTSVQPVVAVERTVFYRERAAGMY 1278
Query: 1023 AGIPWALAQVMIEIPYILVQSVVYGAIVYAMIGFEWTAAKFFWYIFFMYFTLLFFTFYGM 1082
+ P+A QV+IEIPY LVQ+ VYG IVYAMIGFEWTAAKFFWY+FFM FTLL+FTFYGM
Sbjct: 1279 SAFPYAFGQVVIEIPYTLVQATVYGIIVYAMIGFEWTAAKFFWYLFFMVFTLLYFTFYGM 1338
Query: 1083 MAVALTPNHHIAAIVSTLFYGLWNVFSGFIIPRPRIPIWWRWYYWANPIAWTLYGLVASQ 1142
MAV LTPN+HIA+IVS+ FY +WN+FSGF+IPRPR+PIWWRWY WA P+AWTLYGLV SQ
Sbjct: 1339 MAVGLTPNYHIASIVSSAFYAIWNLFSGFVIPRPRVPIWWRWYCWACPVAWTLYGLVVSQ 1398
Query: 1143 FGDMDDKKMDTGETVKQFLKDYFDFKHDFLGVVAAVLVVFAVLFGFLFALGIKMFNFQRR 1202
FGD+ + M+ G VK F+++YF FKH +LG VA V+ FA LF LF I FNFQ+R
Sbjct: 1399 FGDI-ETPMEDGTPVKVFVENYFGFKHSWLGWVATVVAAFAFLFASLFGFAIMKFNFQKR 1457
|
May be a general defense protein. Oryza sativa subsp. indica (taxid: 39946) |
| >sp|Q8GU92|PDR2_ORYSJ Probable pleiotropic drug resistance protein 2 OS=Oryza sativa subsp. japonica GN=PDR2 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 1744 bits (4517), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 850/1197 (71%), Positives = 989/1197 (82%), Gaps = 17/1197 (1%)
Query: 9 EMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEM 68
+MLTEL+RREKAA IKPD DID +MKA A EGQE N+ITDY LK+LGLD+CADTMVGD+M
Sbjct: 282 DMLTELSRREKAANIKPDADIDAFMKASAMEGQETNLITDYILKILGLDICADTMVGDDM 341
Query: 69 IRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVIS 128
+RGISGGQ+KRVTTGEM+VGPA ALFMDEISTGLDSSTTFQIV LRQ IHI GTAVIS
Sbjct: 342 VRGISGGQRKRVTTGEMLVGPANALFMDEISTGLDSSTTFQIVKSLRQAIHILGGTAVIS 401
Query: 129 LLQPAPETYDLFDDIILLSDGQIVYQGPRELVLEFFASMGFRCPKRKGVADFLQEVTSRK 188
LLQPAPETYDLFDDIILLSDGQIVYQGPRE VLEFF MGF+CP+RKGVADFLQEVTSRK
Sbjct: 402 LLQPAPETYDLFDDIILLSDGQIVYQGPREGVLEFFELMGFKCPERKGVADFLQEVTSRK 461
Query: 189 DQRQYWAHKEKPYRFVTVQEFAEAFQSFHVGQKISDELRTPFDKSKSHRAALTTETYGVG 248
DQ+QYW +KPYR+V V++FA AFQSFH G+ I++EL TPFDKSK+H AALTT YGV
Sbjct: 462 DQKQYWMQHDKPYRYVPVKDFASAFQSFHTGKSIANELATPFDKSKNHPAALTTSRYGVS 521
Query: 249 KRELLKANISRELLLMKRNSFVYIFKLIQIAFVAVVYMTLFLRTKMHKDTVTDGGIFAGA 308
ELLKANI RE LLMKRNSFVYIF+ Q+ V+ + MT+F RTKMH+D+VTDG IF GA
Sbjct: 522 AMELLKANIDREFLLMKRNSFVYIFRACQLMVVSAIAMTVFFRTKMHRDSVTDGVIFMGA 581
Query: 309 TFFAITMVNFNGFSEISMTIAKLPVFYKQRDFRFFPPWAYAIPSWILKIPVSFLEVAVWV 368
FF++ M+ FNG SE+ +TI KLPVF+KQRD FFP W Y IPSWILKIP+SF+EV +V
Sbjct: 582 LFFSVMMIMFNGLSELPLTIFKLPVFFKQRDLLFFPAWTYTIPSWILKIPMSFIEVGGFV 641
Query: 369 FLSYYVVGYDSNAGRFFKQYALLLGVNQMASALFRFIAVTGRNMVVANTFGSFALLVLLS 428
F+SYYV+G+D +AGRFFKQY L+L +NQMA+ALFRF+ RNM+VAN FGSF LL+ +
Sbjct: 642 FMSYYVIGFDPSAGRFFKQYLLMLAINQMAAALFRFVGGAARNMIVANVFGSFMLLIFMV 701
Query: 429 LGGFILSREDIKKWWKWAYWCSPLTYAQNAIVANEFLGHSWKKFTQDS--SETLGVQVLK 486
LGGFIL RE +KKWW W YW SP+ YAQNAI NEFLGHSW K +S +ETLGVQ L+
Sbjct: 702 LGGFILVREKVKKWWIWGYWISPMMYAQNAISVNEFLGHSWDKVLNNSLSNETLGVQALR 761
Query: 487 SRGFFAHEYWYWLGLGALFGFVLLLNFAYTLALTFLDPFEKPRAVITEEIESNEQDDRIG 546
SRG F WYW+G GAL GF++L N +TLALT+L P+ K + ++EE E E+ I
Sbjct: 762 SRGVFPEAKWYWIGFGALLGFIMLFNGLFTLALTYLKPYGKSQPSVSEE-ELKEKQANIN 820
Query: 547 GNV-QLSTLGGSSNHNTRSGSTDDIRGQQSSSQSLSLAEAEASRPKKKGMVLPFEPHSLT 605
GNV + T+ S+N + ++SS+ A+ S+P ++GMVLPF P SLT
Sbjct: 821 GNVLDVDTMASSTNLAI-------VDNTETSSEI-----ADNSQPTQRGMVLPFAPLSLT 868
Query: 606 FDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGR 665
FD + YSVDMP+EMK G++ED+L LL GVSG+FRPGVLTALMGVSGAGKTTLMDVLAGR
Sbjct: 869 FDNIKYSVDMPQEMKAHGIVEDRLELLKGVSGSFRPGVLTALMGVSGAGKTTLMDVLAGR 928
Query: 666 KTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSE 725
KTGGYI GNITISGYPKKQETFAR+SGYCEQNDIHSP VT+ ESLLFSAWLRL +VDS
Sbjct: 929 KTGGYIEGNITISGYPKKQETFARVSGYCEQNDIHSPQVTVSESLLFSAWLRLPKDVDSN 988
Query: 726 TRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 785
TRKMFI+EVMELVEL PLR +LVGLPGV+GLSTEQRKRLTIAVELVANPSIIFMDEPTSG
Sbjct: 989 TRKMFIEEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 1048
Query: 786 LDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLGRHS 845
LDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGG+EIYVGPLG S
Sbjct: 1049 LDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGEEIYVGPLGHQS 1108
Query: 846 CHLISYFEAIPGVQKIKDGYNPATWMLEVSAASQELALGIDFTEHYKRSDLYRRNKALIE 905
LI YFE I GV +IKDGYNPATWMLEVS SQE ALG+DF + Y++S+L++RNKALI+
Sbjct: 1109 SELIKYFEGIKGVSRIKDGYNPATWMLEVSTISQEQALGVDFCDIYRKSELFQRNKALIQ 1168
Query: 906 DLSRPPPGSKDLYFPTQFSQSSWIQFVACLWKQHWSYWRNPPYTAVRFFFTAFIALLFGS 965
+LS PPPGS +LYFPT++S S Q +ACLWK H SYWRNPPY A+R FFT IALLFG+
Sbjct: 1169 ELSTPPPGSSELYFPTKYSLSFLNQCLACLWKMHLSYWRNPPYNAIRLFFTTVIALLFGT 1228
Query: 966 LFWDLGGRTKRNQDLFNAMGSMFTAVLFLGVQYCSSVQPIVSVERTVFYREKAAGMYAGI 1025
+FWDLGG+T ++QDLFNAMGSM++AVLF+GV SVQP+VSVERTVFYRE+AAGMY+
Sbjct: 1229 IFWDLGGKTGKSQDLFNAMGSMYSAVLFIGVLNSQSVQPVVSVERTVFYRERAAGMYSAF 1288
Query: 1026 PWALAQVMIEIPYILVQSVVYGAIVYAMIGFEWTAAKFFWYIFFMYFTLLFFTFYGMMAV 1085
P+A QV IE PY LVQS++YG IVY+MIGF+WTAAKFFWY+FFM+FT L+FTFYGMMAV
Sbjct: 1289 PYAFGQVAIEFPYTLVQSIIYGIIVYSMIGFKWTAAKFFWYLFFMFFTFLYFTFYGMMAV 1348
Query: 1086 ALTPNHHIAAIVSTLFYGLWNVFSGFIIPRPRIPIWWRWYYWANPIAWTLYGLVASQFGD 1145
LTP++H+A+IVS+ FYG+WN+FSGFIIPRP++PIWWRWY W P+AWTLYGLVASQFGD
Sbjct: 1349 GLTPSYHVASIVSSAFYGIWNLFSGFIIPRPKVPIWWRWYCWICPVAWTLYGLVASQFGD 1408
Query: 1146 MDDKKMDTGETVKQFLKDYFDFKHDFLGVVAAVLVVFAVLFGFLFALGIKMFNFQRR 1202
+ MD G VK F+++YFDFKH +LGVVA V+V F +LF FLF I NFQ+R
Sbjct: 1409 I-MTPMDDGTPVKIFVENYFDFKHSWLGVVAVVIVAFTMLFAFLFGFAIMKLNFQKR 1464
|
May be a general defense protein. Oryza sativa subsp. japonica (taxid: 39947) |
| >sp|Q7PC80|PDR1_ORYSJ Probable pleiotropic drug resistance protein 1 OS=Oryza sativa subsp. japonica GN=PDR1 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 1725 bits (4467), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 833/1196 (69%), Positives = 972/1196 (81%), Gaps = 15/1196 (1%)
Query: 9 EMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEM 68
+MLTEL RREKAA IKPD D+D +MKA A EGQE+N+ITDY LK+LGL++CADTMVGD+M
Sbjct: 286 DMLTELTRREKAANIKPDADVDAFMKASAMEGQESNLITDYILKILGLEICADTMVGDDM 345
Query: 69 IRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVIS 128
+RGISGGQ+KRVTTGEM+VGPA A FMDEISTGLDSSTTFQIV LRQ IHI GTAVIS
Sbjct: 346 VRGISGGQRKRVTTGEMLVGPANAFFMDEISTGLDSSTTFQIVKSLRQTIHILGGTAVIS 405
Query: 129 LLQPAPETYDLFDDIILLSDGQIVYQGPRELVLEFFASMGFRCPKRKGVADFLQEVTSRK 188
LLQPAPETYDLFDDIILLSDG IVYQGPRE VLEFF MGF+CP+RKGVADFLQEVTSRK
Sbjct: 406 LLQPAPETYDLFDDIILLSDGHIVYQGPRENVLEFFELMGFKCPERKGVADFLQEVTSRK 465
Query: 189 DQRQYWAHKEKPYRFVTVQEFAEAFQSFHVGQKISDELRTPFDKSKSHRAALTTETYGVG 248
DQ+QYWA +KPYR+V ++EFA AFQSFH G+ I++EL TPFDKSKSH AALTT YGV
Sbjct: 466 DQKQYWAQHDKPYRYVPIKEFASAFQSFHTGRSIANELATPFDKSKSHPAALTTSRYGVS 525
Query: 249 KRELLKANISRELLLMKRNSFVYIFKLIQIAFVAVVYMTLFLRTKMHKDTVTDGGIFAGA 308
ELLKANI RELLL+KRNSFVYIF+ IQ+ V+ + MT+F RTKMH+D+V DG IF GA
Sbjct: 526 AMELLKANIDRELLLIKRNSFVYIFRTIQLMTVSAMAMTVFFRTKMHRDSVADGVIFMGA 585
Query: 309 TFFAITMVNFNGFSEISMTIAKLPVFYKQRDFRFFPPWAYAIPSWILKIPVSFLEVAVWV 368
FFA+ M+ NG SE+ +TI KLPVF+KQRD FFP W Y IPSWILK P+SF+EV +
Sbjct: 586 LFFAVMMIMLNGLSELPLTIFKLPVFFKQRDLLFFPAWTYTIPSWILKSPMSFIEVGGFC 645
Query: 369 FLSYYVVGYDSNAGRFFKQYALLLGVNQMASALFRFIAVTGRNMVVANTFGSFALLVLLS 428
F+SYYV+G+D N GRFFKQY L+L V+QMA+ALFRF+ RN++VAN FGSF LL+ +
Sbjct: 646 FMSYYVIGFDPNVGRFFKQYLLMLAVSQMAAALFRFVGGAARNLIVANVFGSFMLLIFMV 705
Query: 429 LGGFILSREDIKKWWKWAYWCSPLTYAQNAIVANEFLGHSWKKFTQDS--SETLGVQVLK 486
LGGFIL+R+ + KWW W YW SP+ YAQNA+ NEFLGHSW K +S +ETLGVQ L
Sbjct: 706 LGGFILARDKVNKWWIWGYWISPMMYAQNAVSVNEFLGHSWDKVLNNSLSNETLGVQALM 765
Query: 487 SRGFFAHEYWYWLGLGALFGFVLLLNFAYTLALTFLDPFEKPRAVITEEIESNEQDDRIG 546
SRG F WYW+G GAL GF++L N +TLALT+L P K + I+EE E E+ I
Sbjct: 766 SRGIFPEAKWYWIGFGALLGFIMLFNILFTLALTYLKPDGKSQPSISEE-ELKEKQANIN 824
Query: 547 GNVQLSTLGGSSNHNTRSGSTDDIRGQQSSSQSLSLAEAEASRPKKKGMVLPFEPHSLTF 606
GNV SSN+ GST G S A+ S+P ++GMVLPF P SLTF
Sbjct: 825 GNVLDVDTMASSNNLAIVGST----GTGSEI-------ADNSQPTQRGMVLPFTPLSLTF 873
Query: 607 DEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRK 666
+++ YSVDMP+EMK G++ED+L LL GVSG FRPGVLTALMGVSGAGKTTLMDVLAGRK
Sbjct: 874 EDIKYSVDMPQEMKAHGIVEDRLELLKGVSGCFRPGVLTALMGVSGAGKTTLMDVLAGRK 933
Query: 667 TGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSET 726
TGGYI GNI+ISGYPKKQETFAR+SGYCEQNDIHSP VT+ ESLLFSAWLRL +VDS T
Sbjct: 934 TGGYIEGNISISGYPKKQETFARVSGYCEQNDIHSPQVTVSESLLFSAWLRLPKDVDSNT 993
Query: 727 RKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 786
RKMFI+EVMELVEL PLR +LVGLPGV+GLS EQRKRLTIAVELVANPSIIFMDEPTSGL
Sbjct: 994 RKMFIEEVMELVELKPLRDALVGLPGVNGLSIEQRKRLTIAVELVANPSIIFMDEPTSGL 1053
Query: 787 DARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLGRHSC 846
DARAAAIVMRTVRNTV+TGRTVVCTIHQPSIDIFEAFDELFLMKRGG+EIYVGPLG HS
Sbjct: 1054 DARAAAIVMRTVRNTVNTGRTVVCTIHQPSIDIFEAFDELFLMKRGGEEIYVGPLGHHSS 1113
Query: 847 HLISYFEAIPGVQKIKDGYNPATWMLEVSAASQELALGIDFTEHYKRSDLYRRNKALIED 906
LI YFE I GV KI DGYNPATWMLEV+ SQE AL +DF + Y++S+L++RNKALI++
Sbjct: 1114 ELIKYFEGIQGVSKITDGYNPATWMLEVTTVSQEQALDVDFCDIYRKSELFQRNKALIQE 1173
Query: 907 LSRPPPGSKDLYFPTQFSQSSWIQFVACLWKQHWSYWRNPPYTAVRFFFTAFIALLFGSL 966
LS PPPGS +LYFPTQ+SQS IQ +ACLWKQH SYWRNPPY A+R FFT IAL+FG++
Sbjct: 1174 LSTPPPGSSELYFPTQYSQSFLIQCLACLWKQHLSYWRNPPYNAIRLFFTTVIALIFGTI 1233
Query: 967 FWDLGGRTKRNQDLFNAMGSMFTAVLFLGVQYCSSVQPIVSVERTVFYREKAAGMYAGIP 1026
FWDLGG+ ++QDLFNAMGSM+ AVLF+GV SVQP+VSVERTVFYRE+AAGMY+ +P
Sbjct: 1234 FWDLGGKMGQSQDLFNAMGSMYAAVLFIGVLNGQSVQPVVSVERTVFYRERAAGMYSALP 1293
Query: 1027 WALAQVMIEIPYILVQSVVYGAIVYAMIGFEWTAAKFFWYIFFMYFTLLFFTFYGMMAVA 1086
+A QV IE PY LVQSV+Y IVY+MIGF+WT AKFFWY+FFM+FTLL+FTFYGMMAV
Sbjct: 1294 YAFGQVAIEFPYTLVQSVIYSIIVYSMIGFQWTVAKFFWYLFFMFFTLLYFTFYGMMAVG 1353
Query: 1087 LTPNHHIAAIVSTLFYGLWNVFSGFIIPRPRIPIWWRWYYWANPIAWTLYGLVASQFGDM 1146
LTP++H+A+IVS+ FY +WN+F+GF+I RP P+WWRWY W P+AWTLYGL+ SQ+GD+
Sbjct: 1354 LTPSYHVASIVSSAFYAIWNLFTGFVISRPATPVWWRWYCWICPVAWTLYGLIVSQYGDI 1413
Query: 1147 DDKKMDTGETVKQFLKDYFDFKHDFLGVVAAVLVVFAVLFGFLFALGIKMFNFQRR 1202
MD G V F+++YFDFKH +LG VA V+V F +LF FLF I NFQ+R
Sbjct: 1414 -VTPMDDGIPVNVFVENYFDFKHSWLGFVAVVIVAFTMLFAFLFGFAIMKLNFQKR 1468
|
May be a general defense protein. Oryza sativa subsp. japonica (taxid: 39947) |
| >sp|Q8GU89|PDR4_ORYSJ Pleiotropic drug resistance protein 4 OS=Oryza sativa subsp. japonica GN=PDR4 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 1716 bits (4443), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 827/1196 (69%), Positives = 975/1196 (81%), Gaps = 14/1196 (1%)
Query: 9 EMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEM 68
EMLTELARREKAA IKPD DID+YMKA A GQE++V+TDY LK+LGLD+CADT+VG+EM
Sbjct: 267 EMLTELARREKAANIKPDHDIDIYMKASAMGGQESSVVTDYILKILGLDICADTVVGNEM 326
Query: 69 IRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVIS 128
+RGISGGQ+KRVTTGEM+VGPA ALFMDEISTGLDSSTT+QIVN LRQ IHI GTAVIS
Sbjct: 327 LRGISGGQRKRVTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQTIHILGGTAVIS 386
Query: 129 LLQPAPETYDLFDDIILLSDGQIVYQGPRELVLEFFASMGFRCPKRKGVADFLQEVTSRK 188
LLQPAPETY+LFDDIILLSDGQ+VYQGPRE VLEFF MGFRCP RKGVADFLQEVTSRK
Sbjct: 387 LLQPAPETYNLFDDIILLSDGQVVYQGPREHVLEFFEFMGFRCPARKGVADFLQEVTSRK 446
Query: 189 DQRQYWAHKEKPYRFVTVQEFAEAFQSFHVGQKISDELRTPFDKSKSHRAALTTETYGVG 248
DQ QYW +++PYRFV V++FA+AF+SFHVG+ I +EL PFD+++SH AAL T YGV
Sbjct: 447 DQGQYWCRRDRPYRFVPVKQFADAFRSFHVGRSIQNELSEPFDRTRSHPAALATSKYGVS 506
Query: 249 KRELLKANISRELLLMKRNSFVYIFKLIQIAFVAVVYMTLFLRTKMHKDTVTDGGIFAGA 308
++ELLKA I RELLLMKRN+F+YIFK + + +A++ MT F RT M D G I+ GA
Sbjct: 507 RKELLKATIDRELLLMKRNAFMYIFKAVNLTLMALIVMTTFFRTSMRHDR-DYGMIYLGA 565
Query: 309 TFFAITMVNFNGFSEISMTIAKLPVFYKQRDFRFFPPWAYAIPSWILKIPVSFLEVAVWV 368
+FA+ V FNGF+E++MT+ KLPVF+KQRD FFP WAY IPSWIL+IP++FLEV V+V
Sbjct: 566 LYFALDTVMFNGFAELAMTVMKLPVFFKQRDLLFFPAWAYTIPSWILQIPITFLEVGVYV 625
Query: 369 FLSYYVVGYDSNAGRFFKQYALLLGVNQMASALFRFIAVTGRNMVVANTFGSFALLVLLS 428
F++YYV+G+D + RFFKQY LLL +NQM+SALFRFIA GR+MVV++TFG +LL +
Sbjct: 626 FITYYVIGFDPSVSRFFKQYLLLLALNQMSSALFRFIAGIGRDMVVSHTFGPLSLLAFAA 685
Query: 429 LGGFILSREDIKKWWKWAYWCSPLTYAQNAIVANEFLGHSWKKFTQDSSETLGVQVLKSR 488
LGGFIL+R D+KKWW W YW SPL+YAQNAI NEFLGHSW + + TLGV VLKSR
Sbjct: 686 LGGFILARPDVKKWWIWGYWISPLSYAQNAISTNEFLGHSWSQILPGENVTLGVSVLKSR 745
Query: 489 GFFAHEYWYWLGLGALFGFVLLLNFAYTLALTFLDPFEKPRAVITEEIESNEQDDRIGGN 548
G F WYW+GLGAL G+ LL N YT+AL+ L PF A ++E+ + + G
Sbjct: 746 GIFTEAKWYWIGLGALLGYTLLFNLLYTVALSVLSPFTDSHASMSEDALKEKHANLTGEV 805
Query: 549 VQLSTLGGSSNHNTRSGSTD--DIRGQQSSSQSLSLAEAEASRPKKKGMVLPFEPHSLTF 606
V+ G + +R + I Q S S A++ ASR KGMVLPF P S++F
Sbjct: 806 VE-----GQKDTKSRKQELELSHIADQNSGINS---ADSSASR---KGMVLPFAPLSISF 854
Query: 607 DEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRK 666
++V YSVDMPE MK QG+ ED+L+LL GVSG+FRPGVLTALMGVSGAGKTTLMDVLAGRK
Sbjct: 855 NDVRYSVDMPEAMKAQGITEDRLLLLKGVSGSFRPGVLTALMGVSGAGKTTLMDVLAGRK 914
Query: 667 TGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSET 726
TGGYI G+I ISGYPKKQETFARISGYCEQNDIHSP VT+YESL+FSAWLRL EVDSE
Sbjct: 915 TGGYIEGDIRISGYPKKQETFARISGYCEQNDIHSPHVTVYESLVFSAWLRLPSEVDSEA 974
Query: 727 RKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 786
RKMFI+EVM+LVEL LR +LVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL
Sbjct: 975 RKMFIEEVMDLVELTSLRGALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1034
Query: 787 DARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLGRHSC 846
DARAAAIVMRTVRNTV+TGRTVVCTIHQPSIDIFEAFDELFLMKRGG+EIYVGP+G++S
Sbjct: 1035 DARAAAIVMRTVRNTVNTGRTVVCTIHQPSIDIFEAFDELFLMKRGGEEIYVGPVGQNSS 1094
Query: 847 HLISYFEAIPGVQKIKDGYNPATWMLEVSAASQELALGIDFTEHYKRSDLYRRNKALIED 906
LI YFE I GV +IKDGYNPATWMLEV++++QE LG+DF+E Y++S+LY+RNK LIE+
Sbjct: 1095 KLIEYFEGIDGVSRIKDGYNPATWMLEVTSSAQEEMLGVDFSEIYRQSELYQRNKELIEE 1154
Query: 907 LSRPPPGSKDLYFPTQFSQSSWIQFVACLWKQHWSYWRNPPYTAVRFFFTAFIALLFGSL 966
LS PPPGS DL FPTQ+S+S Q +ACLWKQ+WSYWRNP YTAVR FT IAL+FG++
Sbjct: 1155 LSTPPPGSTDLNFPTQYSRSFITQCLACLWKQNWSYWRNPSYTAVRLLFTIVIALMFGTM 1214
Query: 967 FWDLGGRTKRNQDLFNAMGSMFTAVLFLGVQYCSSVQPIVSVERTVFYREKAAGMYAGIP 1026
FW+LG RTK+ QDLFNAMGSM+ AVL++GVQ SVQP+V VERTVFYRE+AAGMY+ P
Sbjct: 1215 FWNLGTRTKKQQDLFNAMGSMYAAVLYIGVQNSGSVQPVVVVERTVFYRERAAGMYSAFP 1274
Query: 1027 WALAQVMIEIPYILVQSVVYGAIVYAMIGFEWTAAKFFWYIFFMYFTLLFFTFYGMMAVA 1086
+A QV IE+PYI+VQ+++YG +VY+MIGFEWT AKF WY+FFMYFTLL+FTFYGMMAV
Sbjct: 1275 YAFGQVAIELPYIMVQTLIYGVLVYSMIGFEWTVAKFLWYLFFMYFTLLYFTFYGMMAVG 1334
Query: 1087 LTPNHHIAAIVSTLFYGLWNVFSGFIIPRPRIPIWWRWYYWANPIAWTLYGLVASQFGDM 1146
LTPN IAAI+S+ FY +WN+FSG++IPRP+IP+WWRWY W P+AWTLYGLVASQFGD+
Sbjct: 1335 LTPNESIAAIISSAFYNVWNLFSGYLIPRPKIPVWWRWYCWICPVAWTLYGLVASQFGDI 1394
Query: 1147 DDKKMDTGETVKQFLKDYFDFKHDFLGVVAAVLVVFAVLFGFLFALGIKMFNFQRR 1202
TV QF+ DYF F H+FL VVA V VVFAV F FLF+ I FNFQRR
Sbjct: 1395 QHVLEGDTRTVAQFVTDYFGFHHNFLWVVAVVHVVFAVTFAFLFSFAIMKFNFQRR 1450
|
May be a general defense protein. Oryza sativa subsp. japonica (taxid: 39947) |
| >sp|Q949G3|PDR1_NICPL Pleiotropic drug resistance protein 1 OS=Nicotiana plumbaginifolia GN=PDR1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 1706 bits (4418), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 851/1195 (71%), Positives = 998/1195 (83%), Gaps = 33/1195 (2%)
Query: 9 EMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEM 68
EML EL+RREKAA IKPD DID++MKA +TEGQEA V+TDY LK+LGLD+CADTMVGD+M
Sbjct: 274 EMLAELSRREKAANIKPDADIDMFMKAASTEGQEAKVVTDYILKILGLDICADTMVGDQM 333
Query: 69 IRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVIS 128
IRGISGGQKKRVTTGEM+VGP+ ALFMDEISTGLDSSTT+ IVN L+Q++ I GTA+IS
Sbjct: 334 IRGISGGQKKRVTTGEMIVGPSKALFMDEISTGLDSSTTYSIVNSLKQSVRIMKGTALIS 393
Query: 129 LLQPAPETYDLFDDIILLSDGQIVYQGPRELVLEFFASMGFRCPKRKGVADFLQEVTSRK 188
LLQPAPETY+LFDDIILLSDG IVY+GPRE VLEFF SMGF+CP+RKG ADFLQEVTS+K
Sbjct: 394 LLQPAPETYNLFDDIILLSDGYIVYEGPREEVLEFFESMGFKCPERKGAADFLQEVTSKK 453
Query: 189 DQRQYWAHKEKPYRFVTVQEFAEAFQSFHVGQKISDELRTPFDKSKSHRAALTTETYGVG 248
DQ+QYW +++PYRF+T +EFAEA+QSFHVG+K+SDEL+T FDKSKSH AALTT+ YG+G
Sbjct: 454 DQQQYWIRRDEPYRFITSKEFAEAYQSFHVGRKVSDELKTTFDKSKSHPAALTTQKYGIG 513
Query: 249 KRELLKANISRELLLMKRNSFVYIFKLIQIAFVAVVYMTLFLRTKMHKDTVTDGGIFAGA 308
KR+LLK RELLLM+RNSFVY+FK Q+ +A++ MT+F RTKM +D+ DGGI++GA
Sbjct: 514 KRQLLKVCTERELLLMQRNSFVYLFKFFQLLIIALMTMTIFFRTKMPRDSAEDGGIYSGA 573
Query: 309 TFFAITMVNFNGFSEISMTIAKLPVFYKQRDFRFFPPWAYAIPSWILKIPVSFLEVAVWV 368
FF + M+ FNG SE+ MT+ KLPVFYKQRDF F+P WAYAIPSWILKIPV+F EV +WV
Sbjct: 574 LFFVVIMIMFNGLSELPMTLYKLPVFYKQRDFLFYPSWAYAIPSWILKIPVTFAEVGMWV 633
Query: 369 FLSYYVVGYDSNAGRFFKQYALLLGVNQMASALFRFIAVTGRNMVVANTFGSFALLVLLS 428
FL+YYV+G+D N GRFFKQ+ LLL VNQMASALFRFIA GR M VA+TFG+FALL+ +
Sbjct: 634 FLTYYVMGFDPNVGRFFKQFLLLLLVNQMASALFRFIAAVGRTMGVASTFGAFALLLQFA 693
Query: 429 LGGFILSREDIKKWWKWAYWCSPLTYAQNAIVANEFLGHSWKKFTQDSSETLGVQVLKSR 488
LGGFIL+R D+K WW W YW SPL Y+ NAI+ NEF G WK +E LG V+++R
Sbjct: 694 LGGFILARNDVKDWWIWGYWTSPLMYSVNAILVNEFDGQKWKHIVAGGTEPLGAAVVRAR 753
Query: 489 GFFAHEYWYWLGLGALFGFVLLLNFAYTLALTFLDPFEKPRAVITEEIESNEQDDRIGGN 548
GFF YWYW+G+GAL GF+++ N AY++AL +L+PF+KP+A I++E E+NE
Sbjct: 754 GFFPDAYWYWIGVGALAGFIVMFNIAYSVALAYLNPFDKPQATISDESENNES------- 806
Query: 549 VQLSTLGGSSNHNTRSGSTDDIRGQQSSSQSLSLAEAE-ASRPKKKGMVLPFEPHSLTFD 607
+SS Q S E + AS KKKGMVLPF+PHS+TFD
Sbjct: 807 -------------------------ESSPQITSTQEGDSASENKKKGMVLPFDPHSITFD 841
Query: 608 EVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKT 667
EVVYSVDMP EM+ G +++LVLL VSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKT
Sbjct: 842 EVVYSVDMPPEMRESGTSDNRLVLLKSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKT 901
Query: 668 GGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETR 727
GGYI G+I ISGYPKKQ+TFARISGYCEQNDIHSP+VT++ESL++SAWLRL +V+ E R
Sbjct: 902 GGYIDGSIKISGYPKKQDTFARISGYCEQNDIHSPYVTVFESLVYSAWLRLPQDVNEEKR 961
Query: 728 KMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 787
MF++EVM+LVEL PLR +LVGLPGV+GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD
Sbjct: 962 MMFVEEVMDLVELTPLRSALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1021
Query: 788 ARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLGRHSCH 847
ARAAAIVMR VRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLGR SCH
Sbjct: 1022 ARAAAIVMRAVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLGRQSCH 1081
Query: 848 LISYFEAIPGVQKIKDGYNPATWMLEVSAASQELALGIDFTEHYKRSDLYRRNKALIEDL 907
LI YFE+IPGV KI +GYNPATWMLEV+A+SQE+ALG+DFT+ YK+SDLYRRNKALI++L
Sbjct: 1082 LIKYFESIPGVSKIVEGYNPATWMLEVTASSQEMALGVDFTDLYKKSDLYRRNKALIDEL 1141
Query: 908 SRPPPGSKDLYFPTQFSQSSWIQFVACLWKQHWSYWRNPPYTAVRFFFTAFIALLFGSLF 967
S P PG+ DL+F ++FSQ W Q +ACLWKQHWSYWRNP YTAVR FT FIAL+FG++F
Sbjct: 1142 SVPRPGTSDLHFDSEFSQPFWTQCMACLWKQHWSYWRNPAYTAVRLIFTTFIALIFGTMF 1201
Query: 968 WDLGGRTKRNQDLFNAMGSMFTAVLFLGVQYCSSVQPIVSVERTVFYREKAAGMYAGIPW 1027
WD+G + RNQDL NAMGSM+ AVLFLGVQ SSVQP+VSVERTVFYREKAAGMY+ IP+
Sbjct: 1202 WDIGTKVSRNQDLVNAMGSMYAAVLFLGVQNSSSVQPVVSVERTVFYREKAAGMYSAIPY 1261
Query: 1028 ALAQVMIEIPYILVQSVVYGAIVYAMIGFEWTAAKFFWYIFFMYFTLLFFTFYGMMAVAL 1087
A AQV+IEIPYI VQ+ VYG IVY+MIGFEWT AKFFW FFM+FT L+FTF+GMM VA+
Sbjct: 1262 AFAQVLIEIPYIFVQATVYGLIVYSMIGFEWTVAKFFWDFFFMFFTFLYFTFFGMMTVAV 1321
Query: 1088 TPNHHIAAIVSTLFYGLWNVFSGFIIPRPRIPIWWRWYYWANPIAWTLYGLVASQFGDMD 1147
TPN ++A+IV+ FY +WN+FSGFI+PRPRIPIWWRWYYW PIAWTLYGLVASQFGD+
Sbjct: 1322 TPNQNVASIVAGFFYTVWNLFSGFIVPRPRIPIWWRWYYWGCPIAWTLYGLVASQFGDLQ 1381
Query: 1148 DKKMDTGETVKQFLKDYFDFKHDFLGVVAAVLVVFAVLFGFLFALGIKMFNFQRR 1202
D D +TV+QFL+ F FKHDFLGVVAAV+V FAV+F F FALGIK FNFQRR
Sbjct: 1382 DPLTDQNQTVEQFLRSNFGFKHDFLGVVAAVIVAFAVVFAFTFALGIKAFNFQRR 1436
|
Excretes secondary metabolites such as terpenes. Involved in both constitutive and jasmonic acid-dependent induced defense. Confers some resistance to sclareol and B.cinerea. Nicotiana plumbaginifolia (taxid: 4092) |
| >sp|Q8GU88|PDR7_ORYSJ Putative pleiotropic drug resistance protein 7 OS=Oryza sativa subsp. japonica GN=PDR7 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 1697 bits (4395), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 822/1196 (68%), Positives = 987/1196 (82%), Gaps = 16/1196 (1%)
Query: 9 EMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEM 68
+MLTEL+RREK A IKPDPDIDVYMKAI+ EGQE+ V+TDY LK+LGL++CADTMVGD M
Sbjct: 263 DMLTELSRREKEASIKPDPDIDVYMKAISVEGQES-VVTDYILKILGLEICADTMVGDAM 321
Query: 69 IRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVIS 128
IRGISGGQKKRVTTGEM+VGPA ALFMDEISTGLDSSTT+QIVN LRQ++HI GTA+I+
Sbjct: 322 IRGISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTYQIVNSLRQSVHILGGTALIA 381
Query: 129 LLQPAPETYDLFDDIILLSDGQIVYQGPRELVLEFFASMGFRCPKRKGVADFLQEVTSRK 188
LLQPAPETYDLFDDI+LLS+GQIVYQGPRE +LEFF +MGF+CP+RKGVADFLQEVTSRK
Sbjct: 382 LLQPAPETYDLFDDIVLLSEGQIVYQGPRENILEFFEAMGFKCPERKGVADFLQEVTSRK 441
Query: 189 DQRQYWAHKEKPYRFVTVQEFAEAFQSFHVGQKISDELRTPFDKSKSHRAALTTETYGVG 248
DQ QYW +++PYR+++V +F+EAF+ FHVG+ + ELR PFD++++H AALTT YG+
Sbjct: 442 DQHQYWCRRDEPYRYISVNDFSEAFKEFHVGRNLGSELRVPFDRTRNHPAALTTSRYGIS 501
Query: 249 KRELLKANISRELLLMKRNSFVYIFKLIQIAFVAVVYMTLFLRTKMHKDTVTDGGIFAGA 308
K EL KA SRE LLMKRNSFVYIFK++Q+ + + MT+FLRTKMH+ +V DG IF GA
Sbjct: 502 KMELTKACFSREWLLMKRNSFVYIFKILQLIILGSIGMTVFLRTKMHRRSVEDGAIFLGA 561
Query: 309 TFFAITMVNFNGFSEISMTIAKLPVFYKQRDFRFFPPWAYAIPSWILKIPVSFLEVAVWV 368
F + FNGF+E++M+IAKLP+FYKQRD F+P WAYA+P+W+LKIP+SFLE AVW+
Sbjct: 562 MFLGLVTHLFNGFAELAMSIAKLPIFYKQRDLLFYPSWAYALPTWVLKIPISFLECAVWI 621
Query: 369 FLSYYVVGYDSNAGRFFKQYALLLGVNQMASALFRFIAVTGRNMVVANTFGSFALLVLLS 428
++YYV+G+D N RFF+ Y LL+ ++QMAS LFR +A GR MVVA+TFGSFA L+LL
Sbjct: 622 CMTYYVMGFDPNIERFFRHYVLLVLISQMASGLFRLLAALGREMVVADTFGSFAQLILLV 681
Query: 429 LGGFILSREDIKKWWKWAYWCSPLTYAQNAIVANEFLGHSWKKFTQ--DSSETLGVQVLK 486
LGGF++SRE+IKKWW W YW SPL YAQNAI NEFLGHSW K S++TLGVQVLK
Sbjct: 682 LGGFLISRENIKKWWIWGYWSSPLMYAQNAIAVNEFLGHSWNKVVDPTQSNDTLGVQVLK 741
Query: 487 SRGFFAHEYWYWLGLGALFGFVLLLNFAYTLALTFLDPFEKPRAVITEEIESNEQDDRIG 546
RG F WYW+G+GAL G+++L N + L L +LDP K +AV++EE + +R G
Sbjct: 742 VRGIFVDANWYWIGVGALLGYIMLFNILFILFLEWLDPLGKGQAVVSEEELREKHVNRTG 801
Query: 547 GNVQLSTLGGSSNHNTRSGSTDDIRGQQSSSQSLSLAEAEASRPKKKGMVLPFEPHSLTF 606
NV+L TLG S ++ S + E + +K+GMVLPF P S+TF
Sbjct: 802 ENVELLTLGTDSQNS-------------PSDANAGRGEITGADTRKRGMVLPFTPLSITF 848
Query: 607 DEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRK 666
D + YSVDMP+EMK +GV ED+L+LL GVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRK
Sbjct: 849 DNIRYSVDMPQEMKDKGVTEDRLLLLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRK 908
Query: 667 TGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSET 726
TGGYI G+I+ISGYPKKQETFARI+GYCEQNDIHSP VT+YESLL+SAWLRL EVDSE
Sbjct: 909 TGGYIEGDISISGYPKKQETFARIAGYCEQNDIHSPHVTVYESLLYSAWLRLPSEVDSEA 968
Query: 727 RKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 786
RKMF++EVMELVEL LR +LVGLPGV+GLSTEQRKRLTIAVELVANPSIIFMDEPTSGL
Sbjct: 969 RKMFVEEVMELVELTSLRGALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1028
Query: 787 DARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLGRHSC 846
DARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGG+EIYVGPLG +SC
Sbjct: 1029 DARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGEEIYVGPLGHNSC 1088
Query: 847 HLISYFEAIPGVQKIKDGYNPATWMLEVSAASQELALGIDFTEHYKRSDLYRRNKALIED 906
HLI+YFE I GV+KIKDGYNPATWMLEV+ +QE LGI+F E Y+ SDLY+RNK LI +
Sbjct: 1089 HLINYFEGIQGVRKIKDGYNPATWMLEVTTLAQEDILGINFAEVYRNSDLYQRNKTLISE 1148
Query: 907 LSRPPPGSKDLYFPTQFSQSSWIQFVACLWKQHWSYWRNPPYTAVRFFFTAFIALLFGSL 966
LS PPPGS DL+FPTQFSQ + Q +ACLWKQH SYWRNP YTA R FFT IAL+FG++
Sbjct: 1149 LSTPPPGSTDLHFPTQFSQPFFTQCMACLWKQHKSYWRNPSYTATRIFFTTVIALIFGTI 1208
Query: 967 FWDLGGRTKRNQDLFNAMGSMFTAVLFLGVQYCSSVQPIVSVERTVFYREKAAGMYAGIP 1026
F +LG + + DLFN++GSM+ AVLF+G+Q +VQPIV VERTVFYREKAAGMY+ +P
Sbjct: 1209 FLNLGKKINKRLDLFNSLGSMYAAVLFIGIQNGQTVQPIVDVERTVFYREKAAGMYSALP 1268
Query: 1027 WALAQVMIEIPYILVQSVVYGAIVYAMIGFEWTAAKFFWYIFFMYFTLLFFTFYGMMAVA 1086
+A AQV+IEIP+I +Q+VVYG IVY++IGF+WT KFFWY+FFM+FT ++FTFYGMMAVA
Sbjct: 1269 YAFAQVLIEIPHIFLQTVVYGLIVYSLIGFDWTVEKFFWYMFFMFFTFMYFTFYGMMAVA 1328
Query: 1087 LTPNHHIAAIVSTLFYGLWNVFSGFIIPRPRIPIWWRWYYWANPIAWTLYGLVASQFGDM 1146
+TPN IAAIVST FY +WN+F+GF+IPRPRIPIWWRWY WA P+AWTLYGLVASQ+GD+
Sbjct: 1329 MTPNSDIAAIVSTAFYCIWNIFAGFLIPRPRIPIWWRWYSWACPVAWTLYGLVASQYGDI 1388
Query: 1147 DDKKMDTGETVKQFLKDYFDFKHDFLGVVAAVLVVFAVLFGFLFALGIKMFNFQRR 1202
+ ++ GE V+ +++ YF F+HD+LG VA +V FA LF F+FA IK+FNFQRR
Sbjct: 1389 TNSTLEDGEVVQDYIRRYFGFRHDYLGYVATAVVGFAALFAFVFAFSIKVFNFQRR 1444
|
May be a general defense protein. Oryza sativa subsp. japonica (taxid: 39947) |
| >sp|O24367|TUR2_SPIPO Pleiotropic drug resistance protein TUR2 OS=Spirodela polyrrhiza GN=TUR2 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 1674 bits (4336), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 825/1194 (69%), Positives = 980/1194 (82%), Gaps = 19/1194 (1%)
Query: 9 EMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEM 68
EMLTEL+RREK A IKPDPD+DVYMKA+A EGQE+ V+TDY LK+LGLD+CADTMVGD M
Sbjct: 267 EMLTELSRREKEANIKPDPDVDVYMKAVAVEGQES-VVTDYILKILGLDICADTMVGDGM 325
Query: 69 IRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVIS 128
IRGISGGQKKRVTTGEM+VGP+ ALFMDEISTGLDSSTTFQIVN LRQ++HI GTA+I+
Sbjct: 326 IRGISGGQKKRVTTGEMLVGPSKALFMDEISTGLDSSTTFQIVNSLRQSVHILGGTALIA 385
Query: 129 LLQPAPETYDLFDDIILLSDGQIVYQGPRELVLEFFASMGFRCPKRKGVADFLQEVTSRK 188
LLQPAPETYDLFDDI+LLSDGQIVYQGPRE VLEFF SMGF+CP+RKGVADFLQEVTSRK
Sbjct: 386 LLQPAPETYDLFDDILLLSDGQIVYQGPRENVLEFFESMGFKCPERKGVADFLQEVTSRK 445
Query: 189 DQRQYWAHKEKPYRFVTVQEFAEAFQSFHVGQKISDELRTPFDKSKSHRAALTTETYGVG 248
DQ+QYW + +PYRFV V EF+EAF+SFHVG K+ +EL TPFD+S++H AALTT YG+
Sbjct: 446 DQQQYWVRENEPYRFVPVNEFSEAFKSFHVGAKLHEELSTPFDRSRNHPAALTTSKYGIS 505
Query: 249 KRELLKANISRELLLMKRNSFVYIFKLIQIAFVAVVYMTLFLRTKMHKDTVTDGGIFAGA 308
K ELLKA I RE LLMKRNSFVYIFK++Q+ +A++ MT+F RTK+ ++ + D IF GA
Sbjct: 506 KMELLKACIDREWLLMKRNSFVYIFKVVQLIVLALIAMTVFFRTKLPRNGLEDATIFFGA 565
Query: 309 TFFAITMVNFNGFSEISMTIAKLPVFYKQRDFRFFPPWAYAIPSWILKIPVSFLEVAVWV 368
F + FNGF+E++M+IAKLPVFYKQRD F+PPWAYA+P+WILKIP+SF+E VW+
Sbjct: 566 MFLGLVTHLFNGFAELAMSIAKLPVFYKQRDLLFYPPWAYALPTWILKIPISFVECGVWI 625
Query: 369 FLSYYVVGYDSNAGRFFKQYALLLGVNQMASALFRFIAVTGRNMVVANTFGSFALLVLLS 428
++YYV+G+D N R F+ Y LL+ ++Q+AS LFR +A GR+MVVA+TFG+FA LVLL
Sbjct: 626 AMTYYVIGFDPNVVRMFRHYLLLVLISQVASGLFRLLAAVGRDMVVADTFGAFAQLVLLV 685
Query: 429 LGGFILSREDIKKWWKWAYWCSPLTYAQNAIVANEFLGHSWKKFTQDSSETLGVQVLKSR 488
LGGFI++RE IKK+W W YW SPL YAQNAI NEFLGHSW K + +TLG + L++R
Sbjct: 686 LGGFIIAREKIKKFWIWGYWSSPLMYAQNAIAVNEFLGHSWNKLVDATGQTLGERFLRNR 745
Query: 489 GFFAHEYWYWLGLGALFGFVLLLNFAYTLALTFLDPFEKPRAVITEEIESNEQDDRIGGN 548
G F + WYW+G+GAL G+++L NF + L L +LDP K + ++EE ++ +R G N
Sbjct: 746 GIFVDKNWYWIGVGALIGYMVLFNFLFILFLEWLDPLGKGQTTVSEEALQEKEANRTGAN 805
Query: 549 VQLSTLGGSSNHNTRSGSTDDIRGQQSSSQSLSLAEAEASRPKKKGMVLPFEPHSLTFDE 608
V+L+T G ++ T G + +IR + +KKGMVLPF P S+TFD
Sbjct: 806 VELATRGSAA---TSDGGSVEIRKDGN---------------RKKGMVLPFTPLSITFDN 847
Query: 609 VVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG 668
V YSVDMP+EMK +GV EDKL+LL GVSGAFRPGVLTALMGVSG GKTTLMDVLAGRKTG
Sbjct: 848 VKYSVDMPQEMKDRGVTEDKLLLLKGVSGAFRPGVLTALMGVSGRGKTTLMDVLAGRKTG 907
Query: 669 GYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRK 728
GYI G+I ISGYPK QETFARISGYCEQNDIHSP VT+YESLL+SAWLRL EVD + RK
Sbjct: 908 GYIEGDIRISGYPKNQETFARISGYCEQNDIHSPHVTVYESLLYSAWLRLPAEVDEKQRK 967
Query: 729 MFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 788
MF+DEVM+LVELN LR SLVGLPGV+GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA
Sbjct: 968 MFVDEVMDLVELNSLRGSLVGLPGVTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 1027
Query: 789 RAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLGRHSCHL 848
RAAAIVMR VRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGG+EIYVGPLGR S HL
Sbjct: 1028 RAAAIVMRAVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGEEIYVGPLGRQSSHL 1087
Query: 849 ISYFEAIPGVQKIKDGYNPATWMLEVSAASQELALGIDFTEHYKRSDLYRRNKALIEDLS 908
I YFE+I GV+KIK+ YNPATWMLEV+ SQE LG++F E Y+ SDLY+RNK LI++LS
Sbjct: 1088 IKYFESIDGVKKIKERYNPATWMLEVTTISQEEILGLNFAEVYRNSDLYKRNKDLIKELS 1147
Query: 909 RPPPGSKDLYFPTQFSQSSWIQFVACLWKQHWSYWRNPPYTAVRFFFTAFIALLFGSLFW 968
PPPGSKDL+F TQFSQS +Q +ACLWKQH SYWRNP YTA R FFT IAL+FG++FW
Sbjct: 1148 TPPPGSKDLFFATQFSQSFVMQCLACLWKQHKSYWRNPSYTATRLFFTVVIALIFGTIFW 1207
Query: 969 DLGGRTKRNQDLFNAMGSMFTAVLFLGVQYCSSVQPIVSVERTVFYREKAAGMYAGIPWA 1028
DLG + + DL NAMGSM+ AVLF+G+Q +VQPIV VERTVFYREKAAGMY+ +P+A
Sbjct: 1208 DLGKKRSTSLDLINAMGSMYAAVLFIGIQNAQTVQPIVDVERTVFYREKAAGMYSALPYA 1267
Query: 1029 LAQVMIEIPYILVQSVVYGAIVYAMIGFEWTAAKFFWYIFFMYFTLLFFTFYGMMAVALT 1088
AQV+IE+P+ILVQ+++YG +VY+MIGF+WTAAKF WY+FFM+FT L+FT+YGMMAVA+T
Sbjct: 1268 YAQVLIEVPHILVQTLLYGLLVYSMIGFDWTAAKFLWYMFFMFFTFLYFTYYGMMAVAMT 1327
Query: 1089 PNHHIAAIVSTLFYGLWNVFSGFIIPRPRIPIWWRWYYWANPIAWTLYGLVASQFGDMDD 1148
PN IAAIV+ FY +WN+F+GFIIPRPRIPIWWRWYYWA P+AWTLYGLV SQFG+ D
Sbjct: 1328 PNSDIAAIVAAAFYAIWNIFAGFIIPRPRIPIWWRWYYWACPVAWTLYGLVVSQFGEYTD 1387
Query: 1149 KKMDTGETVKQFLKDYFDFKHDFLGVVAAVLVVFAVLFGFLFALGIKMFNFQRR 1202
D ETVK FL+ + F+HDFL VV ++VVF VLF +FA IK NFQRR
Sbjct: 1388 TMSDVDETVKDFLRRFLGFRHDFLPVVGVMVVVFTVLFASIFAFSIKTLNFQRR 1441
|
May be a general defense protein (By similarity). Seems involved in turion (dormant buds) formation. Confers resistance to the diterpenoid antifungal agent sclareol. Spirodela polyrrhiza (taxid: 29656) |
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 1202 | ||||||
| 255572799 | 1443 | ATP-binding cassette transporter, putati | 0.980 | 0.816 | 0.723 | 0.0 | |
| 297743362 | 3142 | unnamed protein product [Vitis vinifera] | 0.990 | 0.378 | 0.757 | 0.0 | |
| 255543331 | 1429 | ATP-binding cassette transporter, putati | 0.970 | 0.816 | 0.736 | 0.0 | |
| 356555825 | 1427 | PREDICTED: pleiotropic drug resistance p | 0.968 | 0.815 | 0.727 | 0.0 | |
| 147816688 | 1471 | hypothetical protein VITISV_022715 [Viti | 0.990 | 0.808 | 0.744 | 0.0 | |
| 449460732 | 1451 | PREDICTED: pleiotropic drug resistance p | 0.990 | 0.820 | 0.718 | 0.0 | |
| 256538311 | 1451 | pleiotropic drug resistance protein [Cuc | 0.990 | 0.820 | 0.718 | 0.0 | |
| 449483991 | 1451 | PREDICTED: LOW QUALITY PROTEIN: pleiotro | 0.990 | 0.820 | 0.717 | 0.0 | |
| 255546581 | 1449 | ATP-binding cassette transporter, putati | 0.990 | 0.821 | 0.711 | 0.0 | |
| 255572793 | 1434 | ATP-binding cassette transporter, putati | 0.976 | 0.818 | 0.726 | 0.0 |
| >gi|255572799|ref|XP_002527332.1| ATP-binding cassette transporter, putative [Ricinus communis] gi|223533332|gb|EEF35084.1| ATP-binding cassette transporter, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 1858 bits (4813), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 865/1196 (72%), Positives = 1019/1196 (85%), Gaps = 18/1196 (1%)
Query: 9 EMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEM 68
+ML EL+RREKAA IKPDPDIDV+MKA+ATEGQE NV+TDY LK+LGL+VCADT+VGDEM
Sbjct: 264 DMLVELSRREKAANIKPDPDIDVFMKAVATEGQETNVVTDYVLKILGLEVCADTLVGDEM 323
Query: 69 IRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVIS 128
+RGISGGQ+KRVTTGEM+VGPA ALFMDEISTGLDSSTT+QIVN L+Q IHI GTAVIS
Sbjct: 324 LRGISGGQRKRVTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLKQTIHILDGTAVIS 383
Query: 129 LLQPAPETYDLFDDIILLSDGQIVYQGPRELVLEFFASMGFRCPKRKGVADFLQEVTSRK 188
LLQPAPETYDLFDDIILLSDGQIVYQGPRE VLEFF MGF+CP+RKGVADFLQEVTS+
Sbjct: 384 LLQPAPETYDLFDDIILLSDGQIVYQGPREHVLEFFEYMGFKCPERKGVADFLQEVTSKN 443
Query: 189 DQRQYWAHKEKPYRFVTVQEFAEAFQSFHVGQKISDELRTPFDKSKSHRAALTTETYGVG 248
DQ+QYW K++PY FVTVQEF+EAFQS+ VGQ I EL TPFDKSKSH AAL YGV
Sbjct: 444 DQKQYWVQKDQPYSFVTVQEFSEAFQSYDVGQIIGQELSTPFDKSKSHPAALAARKYGVD 503
Query: 249 KRELLKANISRELLLMKRNSFVYIFKLIQIAFVAVVYMTLFLRTKMHKDTVTDGGIFAGA 308
K ELLKA +RE LLMKRNSFVYIFKL Q+ +A++ MTLFLRT+MH++ +TD G++ GA
Sbjct: 504 KMELLKACFAREYLLMKRNSFVYIFKLTQLVVMAIISMTLFLRTEMHREDLTDAGVYLGA 563
Query: 309 TFFAITMVNFNGFSEISMTIAKLPVFYKQRDFRFFPPWAYAIPSWILKIPVSFLEVAVWV 368
FF++ + FNG SE+SMTIAKLPVFYKQRD +F+PPWAYA+P+WILKIP++F EV VWV
Sbjct: 564 LFFSLIAIMFNGMSELSMTIAKLPVFYKQRDLQFYPPWAYALPTWILKIPITFFEVGVWV 623
Query: 369 FLSYYVVGYDSNAGRFFKQYALLLGVNQMASALFRFIAVTGRNMVVANTFGSFALLVLLS 428
F++YYV+G+D N R FKQY LLL VNQMAS LFRFIA GRNM+VANTFGSFALL + +
Sbjct: 624 FITYYVIGFDPNVERLFKQYFLLLIVNQMASGLFRFIAAVGRNMIVANTFGSFALLTVFA 683
Query: 429 LGGFILSREDIKKWWKWAYWCSPLTYAQNAIVANEFLGHSWKKFTQDSSET--LGVQVLK 486
LGG +LSR+DIKKWW W YW SP+ Y QNA+VANEFLG SW +S+ T LGVQ +K
Sbjct: 684 LGGIVLSRDDIKKWWTWGYWISPMMYGQNALVANEFLGESWNHVPANSTSTDSLGVQFIK 743
Query: 487 SRGFFAHEYWYWLGLGALFGFVLLLNFAYTLALTFLDPFEKPRAVITEEIESNEQDDRIG 546
SRGFF H YWYW+G+GAL GF +L N +TLALT L+P+EKP AVI++E E+ DR G
Sbjct: 744 SRGFFPHAYWYWIGIGALTGFTILFNLCFTLALTHLNPYEKPHAVISDE---PERSDRTG 800
Query: 547 GNVQLSTLGGSSNHNTRSGSTDDIRGQQSSSQSLSLAEAEASRPKKKGMVLPFEPHSLTF 606
G +QLS G S+H T + + IR EA++ KKKGMVLPFEPHS+TF
Sbjct: 801 GAIQLSQNG--SSHRTITENGVGIR-----------MTDEANQNKKKGMVLPFEPHSITF 847
Query: 607 DEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRK 666
++V+YSVDMP+EMK QG+ +DKLVLL GVSGAF+PGVLTALMGVSGAGKTTLMDVLAGRK
Sbjct: 848 NDVMYSVDMPQEMKSQGIADDKLVLLKGVSGAFKPGVLTALMGVSGAGKTTLMDVLAGRK 907
Query: 667 TGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSET 726
TGGYI G+I ISGYPKKQ+TFARISGYCEQNDIHSP VT+YESL++SAWLRL+PEVD ET
Sbjct: 908 TGGYIEGDIRISGYPKKQDTFARISGYCEQNDIHSPHVTVYESLIYSAWLRLAPEVDPET 967
Query: 727 RKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 786
RKMF++EVMELVELNPLRQ+LVGLPGV+GLSTEQRKRLTI+VELVANPSIIFMDEPTSGL
Sbjct: 968 RKMFVNEVMELVELNPLRQALVGLPGVNGLSTEQRKRLTISVELVANPSIIFMDEPTSGL 1027
Query: 787 DARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLGRHSC 846
DARAAAIVMRTVRNTVDTGRTVVCTIHQPSID+FEAFDELFLMKRGG+EIYVGPLGRHSC
Sbjct: 1028 DARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDLFEAFDELFLMKRGGEEIYVGPLGRHSC 1087
Query: 847 HLISYFEAIPGVQKIKDGYNPATWMLEVSAASQELALGIDFTEHYKRSDLYRRNKALIED 906
H+I YFE I G K+KDGYNPATWMLEV++++QEL+LG+DF YK S+LYRRNKA+I++
Sbjct: 1088 HMIDYFEVIEGASKVKDGYNPATWMLEVTSSAQELSLGVDFATIYKNSELYRRNKAIIKE 1147
Query: 907 LSRPPPGSKDLYFPTQFSQSSWIQFVACLWKQHWSYWRNPPYTAVRFFFTAFIALLFGSL 966
LS PGSKDLYFPTQ+SQS Q +ACLWKQ SYWRNPPYTAVRF FT FIAL+FG++
Sbjct: 1148 LSTSVPGSKDLYFPTQYSQSFLTQCIACLWKQRLSYWRNPPYTAVRFLFTTFIALMFGTM 1207
Query: 967 FWDLGGRTKRNQDLFNAMGSMFTAVLFLGVQYCSSVQPIVSVERTVFYREKAAGMYAGIP 1026
FWDLG +T+ QD+FN+ GSM+ AV+FLG Q +SVQP+V++ERTVFYRE+AAGMY+ +P
Sbjct: 1208 FWDLGSKTRTQQDIFNSAGSMYAAVVFLGTQNAASVQPVVAIERTVFYRERAAGMYSALP 1267
Query: 1027 WALAQVMIEIPYILVQSVVYGAIVYAMIGFEWTAAKFFWYIFFMYFTLLFFTFYGMMAVA 1086
+A AQV++EIPYI Q+VVYG + Y+MIGFEWTAAKFFWYIFFMYFTL++FT+YGMMAVA
Sbjct: 1268 YAYAQVLVEIPYIFAQAVVYGLLTYSMIGFEWTAAKFFWYIFFMYFTLMYFTYYGMMAVA 1327
Query: 1087 LTPNHHIAAIVSTLFYGLWNVFSGFIIPRPRIPIWWRWYYWANPIAWTLYGLVASQFGDM 1146
+TPNHHIA++VS+ FYG+WN+FSGFI+PR R+P+WWRWYYW P++WTLYGL+ SQF D+
Sbjct: 1328 VTPNHHIASVVSSAFYGIWNLFSGFIVPRTRMPVWWRWYYWVCPVSWTLYGLIGSQFSDI 1387
Query: 1147 DDKKMDTGETVKQFLKDYFDFKHDFLGVVAAVLVVFAVLFGFLFALGIKMFNFQRR 1202
D +TV+ F+++Y+ +HDFLGVVAAV+V VLF F+FA+ IK FNFQRR
Sbjct: 1388 KDAFEGGSQTVEDFVREYYGIRHDFLGVVAAVIVGTTVLFAFIFAVSIKSFNFQRR 1443
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297743362|emb|CBI36229.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1857 bits (4809), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 908/1198 (75%), Positives = 1036/1198 (86%), Gaps = 8/1198 (0%)
Query: 9 EMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEM 68
+ML EL+RREKAA IKPDPDIDV+MKA+ATEGQ+ NVITDY LK+LGL+VCADT+VGD+M
Sbjct: 1949 DMLAELSRREKAANIKPDPDIDVFMKAVATEGQKENVITDYTLKILGLEVCADTLVGDQM 2008
Query: 69 IRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVIS 128
IRGISGGQ+KRVTTGEM+VGP+ ALFMDEISTGLDSSTT+QIVN LRQ IHI +GTA+IS
Sbjct: 2009 IRGISGGQRKRVTTGEMLVGPSKALFMDEISTGLDSSTTYQIVNSLRQTIHILNGTALIS 2068
Query: 129 LLQPAPETYDLFDDIILLSDGQIVYQGPRELVLEFFASMGFRCPKRKGVADFLQEVTSRK 188
LLQPAPETYDLFDDIILLSD QIVYQGPRE VL+FF SMGFRCP+RKGVADFLQEVTSRK
Sbjct: 2069 LLQPAPETYDLFDDIILLSDSQIVYQGPREDVLDFFESMGFRCPERKGVADFLQEVTSRK 2128
Query: 189 DQRQYWAHKEKPYRFVTVQEFAEAFQSFHVGQKISDELRTPFDKSKSHRAALTTETYGVG 248
DQ+QYWA K++PY FVTV+EFAEAFQSFH+G+K+ EL TPFDK+KSH AAL TE YGV
Sbjct: 2129 DQQQYWARKDEPYSFVTVKEFAEAFQSFHIGRKLGHELATPFDKTKSHPAALKTEKYGVR 2188
Query: 249 KRELLKANISRELLLMKRNSFVYIFKLIQIAFVAVVYMTLFLRTKMHKDTVTDGGIFAGA 308
K+ELL A ISRE LLMKRNSFVYIFKL Q+ +A + MT+FLRT+MHK++ DG I+ GA
Sbjct: 2189 KKELLDACISREYLLMKRNSFVYIFKLTQLIIMAAISMTIFLRTEMHKNSTDDGSIYTGA 2248
Query: 309 TFFAITMVNFNGFSEISMTIAKLPVFYKQRDFRFFPPWAYAIPSWILKIPVSFLEVAVWV 368
FF + M+ FNG SE++MTIAKLPVFYKQR F+P WAYA+PSWILKIP++F+EVAVWV
Sbjct: 2249 LFFTVVMIMFNGMSELAMTIAKLPVFYKQRGLLFYPAWAYALPSWILKIPITFVEVAVWV 2308
Query: 369 FLSYYVVGYDSNAGRFFKQYALLLGVNQMASALFRFIAVTGRNMVVANTFGSFALLVLLS 428
F+SYYV+G+D N GR FKQY LL+ VNQMASALFRFIA GRNM+VANTFGSF+LL+L +
Sbjct: 2309 FMSYYVIGFDPNVGRLFKQYLLLVLVNQMASALFRFIAAAGRNMIVANTFGSFSLLLLFA 2368
Query: 429 LGGFILSREDIKKWWKWAYWCSPLTYAQNAIVANEFLGHSWKKFTQ-DSSETLGVQVLKS 487
LGGF+LSRE++KKWW W YW SPL YAQNAIV NEFLG SW K + DS+E+LGV VLKS
Sbjct: 2369 LGGFVLSRENVKKWWIWGYWSSPLMYAQNAIVVNEFLGKSWSKNSSTDSTESLGVAVLKS 2428
Query: 488 RGFFAHEYWYWLGLGALFGFVLLLNFAYTLALTFLDPFEKPRAVITEEIESNEQDDRIGG 547
RGFF YWYW+G GAL GF+L+ NF YT+ALT+L+ FEKP+AVITEE E + + GG
Sbjct: 2429 RGFFTEAYWYWIGAGALLGFILVFNFCYTVALTYLNAFEKPQAVITEESE----NSKTGG 2484
Query: 548 NVQLSTLGGSSNHNTRSGSTDDIRGQQSSSQSLSL---AEAEASRPKKKGMVLPFEPHSL 604
++LS+ S T S D G+ SS S S+ A AEA R KKGMVLPF+P S+
Sbjct: 2485 KIELSSHRRGSIDQTASTERRDEIGRSISSTSSSVRAEAIAEARRNNKKGMVLPFQPLSI 2544
Query: 605 TFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG 664
TFD++ YSVDMPEEMK QGVLED+L LL GVSGAFRPGVLTALMGVSGAGKTTLMDVLAG
Sbjct: 2545 TFDDIRYSVDMPEEMKSQGVLEDRLELLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG 2604
Query: 665 RKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDS 724
RKTGGYI GNI ISGYPKKQETFARISGYCEQNDIHSP VTI+ESLL+SAWLRL +VDS
Sbjct: 2605 RKTGGYIEGNINISGYPKKQETFARISGYCEQNDIHSPHVTIHESLLYSAWLRLPADVDS 2664
Query: 725 ETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTS 784
+TRKMFI+EVMELVEL PL+ SLVGLPGV+GLSTEQRKRLTIAVELVANPSIIFMDEPTS
Sbjct: 2665 KTRKMFIEEVMELVELTPLKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTS 2724
Query: 785 GLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLGRH 844
GLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDEL L+KRGGQEIYVGPLGRH
Sbjct: 2725 GLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGQEIYVGPLGRH 2784
Query: 845 SCHLISYFEAIPGVQKIKDGYNPATWMLEVSAASQELALGIDFTEHYKRSDLYRRNKALI 904
S HLI YF+ I GV KIKDGYNPATWMLEV++++QE LG+DFTE YK SDLYRRNK LI
Sbjct: 2785 SSHLIKYFQGIEGVSKIKDGYNPATWMLEVTSSAQEFLLGVDFTEIYKNSDLYRRNKDLI 2844
Query: 905 EDLSRPPPGSKDLYFPTQFSQSSWIQFVACLWKQHWSYWRNPPYTAVRFFFTAFIALLFG 964
++LS+P PGSKDLYFPTQ+SQS + Q +ACLWKQ SYWRNPPYTAVRFFFT FIAL+FG
Sbjct: 2845 KELSQPAPGSKDLYFPTQYSQSFFTQCMACLWKQRRSYWRNPPYTAVRFFFTTFIALIFG 2904
Query: 965 SLFWDLGGRTKRNQDLFNAMGSMFTAVLFLGVQYCSSVQPIVSVERTVFYREKAAGMYAG 1024
++FWDLG + K+ QDL NAMGSM+ AVLFLGVQ SSVQP+V+VERTVFYRE+AAGMY+
Sbjct: 2905 TMFWDLGTKRKKQQDLSNAMGSMYAAVLFLGVQNSSSVQPVVAVERTVFYRERAAGMYSA 2964
Query: 1025 IPWALAQVMIEIPYILVQSVVYGAIVYAMIGFEWTAAKFFWYIFFMYFTLLFFTFYGMMA 1084
+P+A AQ ++EIPY+ Q+VVYG IVYAMIGFEWTAAKFFWY+FFM+FTLL+FTFYGMMA
Sbjct: 2965 MPYAFAQALVEIPYVFAQAVVYGVIVYAMIGFEWTAAKFFWYLFFMFFTLLYFTFYGMMA 3024
Query: 1085 VALTPNHHIAAIVSTLFYGLWNVFSGFIIPRPRIPIWWRWYYWANPIAWTLYGLVASQFG 1144
VA TPN HIAAIV+ FYGLWN+FSGFI+PR RIP+WWRWYYWA P+AWTLYGLV SQFG
Sbjct: 3025 VAATPNQHIAAIVAAAFYGLWNLFSGFIVPRTRIPVWWRWYYWACPVAWTLYGLVTSQFG 3084
Query: 1145 DMDDKKMDTGETVKQFLKDYFDFKHDFLGVVAAVLVVFAVLFGFLFALGIKMFNFQRR 1202
D+ D+ DTG+TV+Q+L DYF F+HDFLGVVAAV+V F VLF F+FA IK FNFQRR
Sbjct: 3085 DIQDRFEDTGDTVEQYLNDYFGFEHDFLGVVAAVIVGFTVLFLFIFAFAIKAFNFQRR 3142
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255543331|ref|XP_002512728.1| ATP-binding cassette transporter, putative [Ricinus communis] gi|223547739|gb|EEF49231.1| ATP-binding cassette transporter, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 1845 bits (4780), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 879/1194 (73%), Positives = 1020/1194 (85%), Gaps = 27/1194 (2%)
Query: 9 EMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEM 68
EM++EL RREKA+ IKPDPDIDV+MKA+ATEGQEANV+TDY LK+LGL+VCAD MVG+EM
Sbjct: 263 EMISELLRREKASNIKPDPDIDVFMKAMATEGQEANVVTDYILKILGLEVCADIMVGNEM 322
Query: 69 IRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVIS 128
+RG+SGGQ+KRVTTGEM+VGPA ALFMDEISTGLDSSTT+QIVN ++Q IHI +GTAVIS
Sbjct: 323 LRGVSGGQRKRVTTGEMLVGPAKALFMDEISTGLDSSTTYQIVNSIKQYIHILNGTAVIS 382
Query: 129 LLQPAPETYDLFDDIILLSDGQIVYQGPRELVLEFFASMGFRCPKRKGVADFLQEVTSRK 188
LLQP PETY+LFDDIILLSDGQIVYQGPRE VLEFF MGF+CP+RKGVADFLQEVTSRK
Sbjct: 383 LLQPPPETYNLFDDIILLSDGQIVYQGPRENVLEFFEYMGFKCPERKGVADFLQEVTSRK 442
Query: 189 DQRQYWAHKEKPYRFVTVQEFAEAFQSFHVGQKISDELRTPFDKSKSHRAALTTETYGVG 248
DQ QYWA K+KPY FVTV+EFAEAFQSF VG+++ EL TPFDKSKSH AALTT+ YGVG
Sbjct: 443 DQAQYWADKDKPYSFVTVREFAEAFQSFLVGRRLEAELSTPFDKSKSHPAALTTKKYGVG 502
Query: 249 KRELLKANISRELLLMKRNSFVYIFKLIQIAFVAVVYMTLFLRTKMHKDTVTDGGIFAGA 308
K ELLKA SRE+LLMKRNSFVYIFKL Q+ +A+V MTLFLRT+MH+D+VT+GGI+ GA
Sbjct: 503 KMELLKACFSREILLMKRNSFVYIFKLTQLTIMAMVAMTLFLRTEMHRDSVTNGGIYVGA 562
Query: 309 TFFAITMVNFNGFSEISMTIAKLPVFYKQRDFRFFPPWAYAIPSWILKIPVSFLEVAVWV 368
FF++ + FNG SEIS+TIAKLPVFYKQR F+PPWA+++P WI KIP++ ++VA+WV
Sbjct: 563 LFFSVVFIMFNGLSEISLTIAKLPVFYKQRSLLFYPPWAFSLPPWITKIPITLVQVAIWV 622
Query: 369 FLSYYVVGYDSNAGRFFKQYALLLGVNQMASALFRFIAVTGRNMVVANTFGSFALLVLLS 428
FL+YYV+G+D N GRFFKQY LL V+QMAS LFRFIA GRNM+VANTFGSFALL L +
Sbjct: 623 FLTYYVIGFDPNVGRFFKQYLLLALVSQMASGLFRFIAAAGRNMIVANTFGSFALLALFA 682
Query: 429 LGGFILSREDIKKWWKWAYWCSPLTYAQNAIVANEFLGHSWKKFTQDSSETLGVQVLKSR 488
LGGFILSR++IKKWW W YW SPL Y QNAIV NEFLG+SW K D++ETLG+QVL+SR
Sbjct: 683 LGGFILSRDNIKKWWIWGYWISPLMYGQNAIVVNEFLGNSWNKVLPDTTETLGIQVLESR 742
Query: 489 GFFAHEYWYWLGLGALFGFVLLLNFAYTLALTFLDPFEKPRAVITEEIESNEQDDRIGGN 548
GFF H YWYW+G+GAL GF LL NF +TLALTFL P +KP+AVI+E+ SN + G
Sbjct: 743 GFFTHAYWYWIGVGALVGFTLLYNFFFTLALTFLGPLQKPQAVISEDSASN-TSGKTGEV 801
Query: 549 VQLSTLGGSSNHNTRSGSTDDIRGQQSSSQSLSLAEAEASRPKKKGMVLPFEPHSLTFDE 608
+QLS++ T+ I E + K+KGMVLPFEPHS+TF++
Sbjct: 802 IQLSSV-----------RTELI--------------VEENHQKQKGMVLPFEPHSITFND 836
Query: 609 VVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG 668
+ YSVDMP+EMK QG ED+L LL GVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG
Sbjct: 837 IRYSVDMPQEMKRQGATEDRLELLRGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG 896
Query: 669 GYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRK 728
GYI G+I ISG+PKKQETFARISGYCEQNDIHSP VT+YESLL+S+WLRL PEV+SETRK
Sbjct: 897 GYIEGDIRISGFPKKQETFARISGYCEQNDIHSPHVTVYESLLYSSWLRLPPEVNSETRK 956
Query: 729 MFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 788
MFI+EVMELVEL PLRQ+LVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA
Sbjct: 957 MFIEEVMELVELTPLRQALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 1016
Query: 789 RAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLGRHSCHL 848
RAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDEL LMKRGGQEIYVGPLGRHSC L
Sbjct: 1017 RAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQEIYVGPLGRHSCQL 1076
Query: 849 ISYFEAIPGVQKIKDGYNPATWMLEVSAASQELALGIDFTEHYKRSDLYRRNKALIEDLS 908
I YFEAI GV IKDGYNPATWMLEVS+++QE+ LG+DF YK S+LYRRNKALIE+LS
Sbjct: 1077 IKYFEAIEGVPDIKDGYNPATWMLEVSSSAQEMVLGLDFAAIYKNSELYRRNKALIEELS 1136
Query: 909 RPPPGSKDLYFPTQFSQSSWIQFVACLWKQHWSYWRNPPYTAVRFFFTAFIALLFGSLFW 968
PP GS DLYFPTQ+SQS + Q +ACLWKQHWSYWRNPPYTAVRF FT IAL+FG++FW
Sbjct: 1137 TPPLGSNDLYFPTQYSQSFFTQCMACLWKQHWSYWRNPPYTAVRFLFTTVIALMFGTMFW 1196
Query: 969 DLGGRTKRNQDLFNAMGSMFTAVLFLGVQYCSSVQPIVSVERTVFYREKAAGMYAGIPWA 1028
DLG +T + QDLFNAMGSM+ A++FLG+Q SSVQP+V+VERTVFYRE+AAGMY+ +P+A
Sbjct: 1197 DLGSKTTKRQDLFNAMGSMYAAIVFLGIQNASSVQPVVAVERTVFYRERAAGMYSPLPYA 1256
Query: 1029 LAQVMIEIPYILVQSVVYGAIVYAMIGFEWTAAKFFWYIFFMYFTLLFFTFYGMMAVALT 1088
AQV+IE+PYI +Q+ VYG IVYAMIGFEW+AAKFFWY+FFMYFTLLF+T+YGMMAVA+T
Sbjct: 1257 FAQVVIELPYIFLQAAVYGLIVYAMIGFEWSAAKFFWYLFFMYFTLLFYTYYGMMAVAVT 1316
Query: 1089 PNHHIAAIVSTLFYGLWNVFSGFIIPRPRIPIWWRWYYWANPIAWTLYGLVASQFGDMDD 1148
PN +A+IVS+ FY +WN+FSGFIIPRPRIP+WWRWY W P+A+TLYGLV+SQFGD+
Sbjct: 1317 PNQQVASIVSSAFYSIWNLFSGFIIPRPRIPVWWRWYAWTCPVAYTLYGLVSSQFGDI-K 1375
Query: 1149 KKMDTGETVKQFLKDYFDFKHDFLGVVAAVLVVFAVLFGFLFALGIKMFNFQRR 1202
+++GETV+ F++ YFDFKH+ LG VAA + FA LF F FA IK FNFQRR
Sbjct: 1376 HTLESGETVEDFVRSYFDFKHELLGAVAAAVFGFATLFAFTFAFSIKFFNFQRR 1429
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356555825|ref|XP_003546230.1| PREDICTED: pleiotropic drug resistance protein 1-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1843 bits (4773), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 871/1197 (72%), Positives = 1008/1197 (84%), Gaps = 33/1197 (2%)
Query: 9 EMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEM 68
+ML+EL+RREKAA IKPDPD+DVYMKA ATEGQE+N++TDY LK+LGLD+CADTMVGDEM
Sbjct: 261 DMLSELSRREKAANIKPDPDLDVYMKATATEGQESNIVTDYTLKILGLDICADTMVGDEM 320
Query: 69 IRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVIS 128
+RGISGGQ+KRVTTGEM+VGPA ALFMDEISTGLDSSTTFQIV+ LR +HI +GTAVIS
Sbjct: 321 LRGISGGQRKRVTTGEMLVGPANALFMDEISTGLDSSTTFQIVSSLRHYVHILNGTAVIS 380
Query: 129 LLQPAPETYDLFDDIILLSDGQIVYQGPRELVLEFFASMGFRCPKRKGVADFLQEVTSRK 188
LLQPAPETYDLFDDIIL+SDGQ+VY GPRE VL+FF SMGFRCP+RKGVADFLQEVTS+K
Sbjct: 381 LLQPAPETYDLFDDIILISDGQVVYHGPREYVLDFFESMGFRCPERKGVADFLQEVTSKK 440
Query: 189 DQRQYWAHKEKPYRFVTVQEFAEAFQSFHVGQKISDELRTPFDKSKSHRAALTTETYGVG 248
DQ QYW +++PYRFVTV +FAEAFQSFH+G K+ +EL PFD++KSH AALTT+ YG+
Sbjct: 441 DQAQYWVRRDQPYRFVTVTQFAEAFQSFHIGGKLGEELTVPFDRTKSHPAALTTKKYGIN 500
Query: 249 KRELLKANISRELLLMKRNSFVYIFKLIQIAFVAVVYMTLFLRTKMHKDTVTDGGIFAGA 308
K+ELLKAN SRE LLMKRNSFVY+FKL Q+ +A+V MTLFLRT+MH + + D G++AGA
Sbjct: 501 KKELLKANFSREYLLMKRNSFVYLFKLSQLFIMALVAMTLFLRTEMHHENMDDAGVYAGA 560
Query: 309 TFFAITMVNFNGFSEISMTIAKLPVFYKQRDFRFFPPWAYAIPSWILKIPVSFLEVAVWV 368
FF + V FNG +EISMTIAKLPVFYKQR+ F+P WAYAIPSWILKIPV+ +EVAVWV
Sbjct: 561 VFFMLITVMFNGLAEISMTIAKLPVFYKQRNLLFYPSWAYAIPSWILKIPVTIVEVAVWV 620
Query: 369 FLSYYVVGYDSNAGRFFKQYALLLGVNQMASALFRFIAVTGRNMVVANTFGSFALLVLLS 428
FL+YYV+G+D N GRFFKQY +LL V+QMAS LFR IA GRNM+VANTFG+FA++ +++
Sbjct: 621 FLTYYVIGFDPNVGRFFKQYLVLLIVSQMASGLFRTIAALGRNMIVANTFGAFAIITVVA 680
Query: 429 LGGFILSREDIKKWWKWAYWCSPLTYAQNAIVANEFLGHSWKKFTQDSSETLGVQVLKSR 488
LGGFILS+ DIK WW W YW SPL Y QNA++ NEFL +SW +++ LGV+ L+SR
Sbjct: 681 LGGFILSKRDIKSWWIWGYWISPLMYGQNALMVNEFLSNSW----HNATHNLGVEYLESR 736
Query: 489 GFFAHEYWYWLGLGALFGFVLLLNFAYTLALTFLDPFEKPRAVITEEIESNEQDDRIGGN 548
FF YWYWLGLGAL GFV L N + LAL FL PF+KP+A ITE+ SNE
Sbjct: 737 AFFTDSYWYWLGLGALVGFVFLFNVMFGLALEFLGPFDKPQATITEDESSNE-------- 788
Query: 549 VQLSTLGGSSNHNTRSGSTDDIR--GQQSSSQSLSLAEAEASRPKKKGMVLPFEPHSLTF 606
G+ DI G +SS + SL E+ S KKKGMVLPFEPHS+TF
Sbjct: 789 ----------------GTLADIELPGIESSGRGDSLVES--SHGKKKGMVLPFEPHSITF 830
Query: 607 DEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRK 666
DEVVYSVDMP+EMK QGV ED+LVLL GVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRK
Sbjct: 831 DEVVYSVDMPQEMKEQGVQEDRLVLLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRK 890
Query: 667 TGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSET 726
TGGYI G+I ISGYPKKQETFARISGYCEQNDIHSP VT+YESLL+SAWLRL VDS+T
Sbjct: 891 TGGYIDGSIKISGYPKKQETFARISGYCEQNDIHSPHVTVYESLLYSAWLRLPSSVDSKT 950
Query: 727 RKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 786
RKMFI+EVMELVELNP+R SLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL
Sbjct: 951 RKMFIEEVMELVELNPVRNSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1010
Query: 787 DARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLGRHSC 846
DARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLGRHS
Sbjct: 1011 DARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLGRHSS 1070
Query: 847 HLISYFEAIPGVQKIKDGYNPATWMLEVSAASQELALGIDFTEHYKRSDLYRRNKALIED 906
HLI YFE+I GV KIKDGYNPATWMLEV+A +QEL+LG+DFT+ YK SDLYRRNK LI++
Sbjct: 1071 HLIKYFESIEGVSKIKDGYNPATWMLEVTATAQELSLGVDFTDLYKNSDLYRRNKQLIQE 1130
Query: 907 LSRPPPGSKDLYFPTQFSQSSWIQFVACLWKQHWSYWRNPPYTAVRFFFTAFIALLFGSL 966
L +P PGSKDL+FPTQ+SQS +Q ACLWKQ WSYWRNPPYTAVRFFFT FIAL+FG++
Sbjct: 1131 LGQPAPGSKDLHFPTQYSQSFLVQCQACLWKQRWSYWRNPPYTAVRFFFTTFIALMFGTI 1190
Query: 967 FWDLGGRTKRNQDLFNAMGSMFTAVLFLGVQYCSSVQPIVSVERTVFYREKAAGMYAGIP 1026
FWDLGG+ DL NA+GSM+TAVLFLGVQ SSVQP+V++ERTVFYREKAAGMY+ +P
Sbjct: 1191 FWDLGGKHSTRGDLLNAIGSMYTAVLFLGVQNASSVQPVVAIERTVFYREKAAGMYSALP 1250
Query: 1027 WALAQVMIEIPYILVQSVVYGAIVYAMIGFEWTAAKFFWYIFFMYFTLLFFTFYGMMAVA 1086
+A AQ+++E+PY+ VQ+V YG IVYAMIGFEWTA KFFWY+FFMYFTLL++TFYGMM V
Sbjct: 1251 YAFAQILVELPYVFVQAVTYGVIVYAMIGFEWTAEKFFWYLFFMYFTLLYYTFYGMMTVG 1310
Query: 1087 LTPNHHIAAIVSTLFYGLWNVFSGFIIPRPRIPIWWRWYYWANPIAWTLYGLVASQFGDM 1146
LTPNHHIA+IV+ FY +WN+FSGF++ RP IP+WWRWYYWA P+AWT+YGLVASQFGD+
Sbjct: 1311 LTPNHHIASIVAAAFYAVWNLFSGFVVTRPSIPVWWRWYYWACPVAWTIYGLVASQFGDL 1370
Query: 1147 DDKKMDTGET-VKQFLKDYFDFKHDFLGVVAAVLVVFAVLFGFLFALGIKMFNFQRR 1202
+ G+ VK FL+DY+ KHDF+GV A V+ AVLF +FA+ IK FNFQ+R
Sbjct: 1371 TEPMTSEGQKIVKDFLEDYYGIKHDFIGVSAVVVAGIAVLFALIFAVSIKTFNFQKR 1427
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147816688|emb|CAN77690.1| hypothetical protein VITISV_022715 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1841 bits (4769), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 904/1215 (74%), Positives = 1034/1215 (85%), Gaps = 25/1215 (2%)
Query: 9 EMLTELARREKAAGIKPDPDIDVYMK-----------------AIATEGQEANVITDYYL 51
+ML EL+RREKAA IKPDPDIDV+MK A+ATEGQ+ NVITDY L
Sbjct: 261 DMLAELSRREKAANIKPDPDIDVFMKEQNLLSLEFLKVLIGLMAVATEGQKENVITDYTL 320
Query: 52 KVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIV 111
K+LGL+VCADT+VGD+MIRGISGGQ+KRVTTGEM+VGP+ ALFMDEISTGLDSSTT+QIV
Sbjct: 321 KILGLEVCADTLVGDQMIRGISGGQRKRVTTGEMLVGPSKALFMDEISTGLDSSTTYQIV 380
Query: 112 NCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLEFFASMGFRC 171
N LRQ IHI +GTA+ISLLQPAPETYDLFDDIILLSD QIVYQGPRE VL+FF SMGFRC
Sbjct: 381 NSLRQTIHILNGTALISLLQPAPETYDLFDDIILLSDSQIVYQGPREDVLDFFESMGFRC 440
Query: 172 PKRKGVADFLQEVTSRKDQRQYWAHKEKPYRFVTVQEFAEAFQSFHVGQKISDELRTPFD 231
P+RKGVADFLQEVTSRKDQ+QYWA K++PY FVTV+EFAEAFQSFH+G+K+ EL TPFD
Sbjct: 441 PERKGVADFLQEVTSRKDQQQYWARKDEPYSFVTVKEFAEAFQSFHIGRKLGHELATPFD 500
Query: 232 KSKSHRAALTTETYGVGKRELLKANISRELLLMKRNSFVYIFKLIQIAFVAVVYMTLFLR 291
K+KSH AAL TE YGV K+ELL A ISRE LLMKRNSFVYIFKL Q+ +A + MT+FLR
Sbjct: 501 KTKSHPAALKTEKYGVRKKELLDACISREYLLMKRNSFVYIFKLTQLIIMAAISMTIFLR 560
Query: 292 TKMHKDTVTDGGIFAGATFFAITMVNFNGFSEISMTIAKLPVFYKQRDFRFFPPWAYAIP 351
T+MHK++ DG I+ GA FF + M+ FNG SE++MTIAKLPVFYKQR F+P WAYA+P
Sbjct: 561 TEMHKNSTDDGSIYTGALFFTVVMIMFNGMSELAMTIAKLPVFYKQRGLLFYPAWAYALP 620
Query: 352 SWILKIPVSFLEVAVWVFLSYYVVGYDSNAGRFFKQYALLLGVNQMASALFRFIAVTGRN 411
SWILKIP++F+EVAVWVF+SYYV+G+D N GR FKQY LL+ VNQMASALFRFIA GRN
Sbjct: 621 SWILKIPITFVEVAVWVFMSYYVIGFDPNVGRLFKQYLLLVLVNQMASALFRFIAAAGRN 680
Query: 412 MVVANTFGSFALLVLLSLGGFILSREDIKKWWKWAYWCSPLTYAQNAIVANEFLGHSW-K 470
M+VANTFGSF+LL+L +LGGF+LSRE++KKWW W YW SPL YAQNAIV NEFLG SW K
Sbjct: 681 MIVANTFGSFSLLLLFALGGFVLSRENVKKWWIWGYWSSPLMYAQNAIVVNEFLGKSWSK 740
Query: 471 KFTQDSSETLGVQVLKSRGFFAHEYWYWLGLGALFGFVLLLNFAYTLALTFLDPFEKPRA 530
+ DS+E+LGV VLKSRGFF YWYW+G GAL GF+L+ NF YT+ALT+L+ FEKP+A
Sbjct: 741 NSSTDSTESLGVAVLKSRGFFTEAYWYWIGAGALLGFILVFNFCYTVALTYLNAFEKPQA 800
Query: 531 VITEEIESNEQDDRIGGNVQLSTLGGSSNHNTRSGSTDDIRGQQSSSQSLSL---AEAEA 587
VITEE E++ + GG ++LS+ S T S + G+ SS S S+ A AEA
Sbjct: 801 VITEESENS----KTGGKIELSSHRRGSIDQTASTERREEIGRSISSTSSSVRAEAIAEA 856
Query: 588 SRPKKKGMVLPFEPHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTAL 647
R KKGMVLPF+P S+TF+++ YSVDMPEEMK QGVLED+L LL GVSGAFRPGVLTAL
Sbjct: 857 RRNNKKGMVLPFQPLSITFEDIRYSVDMPEEMKSQGVLEDRLELLKGVSGAFRPGVLTAL 916
Query: 648 MGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIY 707
MGVSGAGKTTLMDVLAGRKTGGYI GNI ISGYPKKQETFARI GYCEQNDIHSP VTI+
Sbjct: 917 MGVSGAGKTTLMDVLAGRKTGGYIEGNINISGYPKKQETFARIXGYCEQNDIHSPHVTIH 976
Query: 708 ESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIA 767
ESLL+SAWLRL +VDS+TRKMFI+EVMELVEL PL+ SLVGLPGV+GLSTEQRKRLTIA
Sbjct: 977 ESLLYSAWLRLPADVDSKTRKMFIEEVMELVELTPLKDSLVGLPGVNGLSTEQRKRLTIA 1036
Query: 768 VELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELF 827
VELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDEL
Sbjct: 1037 VELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELL 1096
Query: 828 LMKRGGQEIYVGPLGRHSCHLISYFEAIPGVQKIKDGYNPATWMLEVSAASQELALGIDF 887
L+KRGGQEIYVGPLGRHS HLI YFE I GV KIK GYNPATWMLEV+ ++QE LG+DF
Sbjct: 1097 LLKRGGQEIYVGPLGRHSSHLIKYFEGIEGVSKIKGGYNPATWMLEVTTSAQEFLLGVDF 1156
Query: 888 TEHYKRSDLYRRNKALIEDLSRPPPGSKDLYFPTQFSQSSWIQFVACLWKQHWSYWRNPP 947
TE YK SDLYRRNK LI++LS+P PGSKDLYFPTQ+SQS + Q +ACLWKQ SYWRNPP
Sbjct: 1157 TEIYKNSDLYRRNKDLIKELSQPAPGSKDLYFPTQYSQSFFTQCMACLWKQRRSYWRNPP 1216
Query: 948 YTAVRFFFTAFIALLFGSLFWDLGGRTKRNQDLFNAMGSMFTAVLFLGVQYCSSVQPIVS 1007
YTAVRFFFT FIAL+FG++FWDLG + K+ QDL NAMGSM+ AVLFLGVQ SSVQP+V+
Sbjct: 1217 YTAVRFFFTTFIALIFGTMFWDLGTKRKKQQDLSNAMGSMYAAVLFLGVQNSSSVQPVVA 1276
Query: 1008 VERTVFYREKAAGMYAGIPWALAQVMIEIPYILVQSVVYGAIVYAMIGFEWTAAKFFWYI 1067
VERTVFYRE+AAGMY+ +P+A AQ ++EIPY+ Q+VVYG IVYAMIGFEWTAAKFFWY+
Sbjct: 1277 VERTVFYRERAAGMYSAMPYAFAQALVEIPYVFAQAVVYGVIVYAMIGFEWTAAKFFWYL 1336
Query: 1068 FFMYFTLLFFTFYGMMAVALTPNHHIAAIVSTLFYGLWNVFSGFIIPRPRIPIWWRWYYW 1127
FFM+FTLL+FTFYGMMAVA TPN HIAAIV+ FYGLWN+FSGFI+PR RIP+WWRWYYW
Sbjct: 1337 FFMFFTLLYFTFYGMMAVAATPNQHIAAIVAAAFYGLWNLFSGFIVPRTRIPVWWRWYYW 1396
Query: 1128 ANPIAWTLYGLVASQFGDMDDKKMDTGETVKQFLKDYFDFKHDFLGVVAAVLVVFAVLFG 1187
A P+AWTLYGLV SQFGD+ D+ DTG+TV+Q+L DYF F+HDFLGVVAAV+V F +LF
Sbjct: 1397 ACPVAWTLYGLVTSQFGDIQDRFEDTGDTVEQYLNDYFGFEHDFLGVVAAVIVGFTILFL 1456
Query: 1188 FLFALGIKMFNFQRR 1202
F+FA IK FNFQRR
Sbjct: 1457 FIFAFAIKAFNFQRR 1471
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449460732|ref|XP_004148099.1| PREDICTED: pleiotropic drug resistance protein 1-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1841 bits (4769), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 859/1196 (71%), Positives = 1025/1196 (85%), Gaps = 6/1196 (0%)
Query: 9 EMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEM 68
+MLTEL+RREKAA IKPDPD+D+ MKA A GQE NV+TDY LK+LGL++CADTMVGDEM
Sbjct: 260 DMLTELSRREKAANIKPDPDLDIIMKAAALGGQETNVVTDYVLKILGLEICADTMVGDEM 319
Query: 69 IRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVIS 128
RGISGGQKKRVTTGEM+VGP+ ALFMDEISTGLDSSTT+QIVN +RQ IHI +GTA+IS
Sbjct: 320 FRGISGGQKKRVTTGEMLVGPSRALFMDEISTGLDSSTTYQIVNSMRQYIHILNGTALIS 379
Query: 129 LLQPAPETYDLFDDIILLSDGQIVYQGPRELVLEFFASMGFRCPKRKGVADFLQEVTSRK 188
LLQPAPETY+LFDDIIL+SDGQ+VYQGPRE VLEFF MGF CP+RKGVADFLQEVTSRK
Sbjct: 380 LLQPAPETYELFDDIILISDGQVVYQGPRENVLEFFQHMGFTCPQRKGVADFLQEVTSRK 439
Query: 189 DQRQYWAHKEKPYRFVTVQEFAEAFQSFHVGQKISDELRTPFDKSKSHRAALTTETYGVG 248
DQ QYW +++ YRFV+V+EF+EAFQSFHVG+K+ DEL TPFDKSKSH AALTTE YG
Sbjct: 440 DQEQYWTKRDEVYRFVSVEEFSEAFQSFHVGKKLGDELATPFDKSKSHPAALTTEKYGAS 499
Query: 249 KRELLKANISRELLLMKRNSFVYIFKLIQIAFVAVVYMTLFLRTKMHKDTVTDGGIFAGA 308
K+ELLKA ISRELLLMKRNSFVYIFKLIQ+ +A V MTLF RT+MH+ TV DG ++ GA
Sbjct: 500 KKELLKACISRELLLMKRNSFVYIFKLIQLILMAFVTMTLFFRTEMHRRTVDDGSVYMGA 559
Query: 309 TFFAITMVNFNGFSEISMTIAKLPVFYKQRDFRFFPPWAYAIPSWILKIPVSFLEVAVWV 368
FFAI ++ FNGFSE+++TI KLPVFYKQRDF FFPPWAY+IP+WILKIP++F+EV +WV
Sbjct: 560 LFFAIIIIMFNGFSELALTILKLPVFYKQRDFLFFPPWAYSIPTWILKIPITFVEVGIWV 619
Query: 369 FLSYYVVGYDSNAGRFFKQYALLLGVNQMASALFRFIAVTGRNMVVANTFGSFALLVLLS 428
++YYVVG+D NAGRFFK + +LL VNQMASALFR I GRN++VANTFGSFALL +L
Sbjct: 620 VMTYYVVGFDPNAGRFFKHFLMLLFVNQMASALFRLIGALGRNIIVANTFGSFALLTVLV 679
Query: 429 LGGFILSREDIKKWWKWAYWCSPLTYAQNAIVANEFLGHSWKKFTQDSSETLGVQVLKSR 488
LGGF+L+R+D+ WW W YW SP+ YAQN I NEFLGH W+ +S+E+LGV +LKSR
Sbjct: 680 LGGFVLARDDVHPWWIWGYWISPMMYAQNGIAVNEFLGHKWRHPAPNSNESLGVLILKSR 739
Query: 489 GFFAHEYWYWLGLGALFGFVLLLNFAYTLALTFLDPFEKPRAVITEEIESNE--QDDRIG 546
G F WYW+G+GA G++LL NF +T+AL +LDPFEKP+A++++E +++ + +
Sbjct: 740 GIFPQASWYWIGVGATIGYILLFNFLFTIALQYLDPFEKPQAIVSKETSTDKSVKKSQDV 799
Query: 547 GNVQLSTLGGSSNHNTRSGSTDDIRGQQSSSQSLSLAEAEASRPKKKGMVLPFEPHSLTF 606
++LS+ G SS+ T + + + + SS++ S +E EA++ KK+GMVLPFEPHS+TF
Sbjct: 800 QELELSSKGKSSSERTENQIS--LSSRTSSARVGSFSE-EANQNKKRGMVLPFEPHSITF 856
Query: 607 DEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRK 666
DE+ Y+VDMP+EMK QGV ED+L LL GVSG+FRPGVLTALMGVSGAGKTTLMDVLAGRK
Sbjct: 857 DEIRYAVDMPQEMKSQGVTEDRLELLKGVSGSFRPGVLTALMGVSGAGKTTLMDVLAGRK 916
Query: 667 TGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSET 726
TGGYI GNITISGYPKKQETFARI+GYCEQ DIHSP VT+YESL++SAWLRL P+VDS T
Sbjct: 917 TGGYIEGNITISGYPKKQETFARIAGYCEQTDIHSPHVTVYESLVYSAWLRLPPDVDSAT 976
Query: 727 RKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 786
RKMF++EVMEL+ELNPLR ++VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL
Sbjct: 977 RKMFVEEVMELIELNPLRDAIVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1036
Query: 787 DARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLGRHSC 846
DARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIF+AFDELFL++RGG+EIYVGP+GRHS
Sbjct: 1037 DARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDAFDELFLLRRGGEEIYVGPVGRHSS 1096
Query: 847 HLISYFEAIPGVQKIKDGYNPATWMLEVSAASQELALGIDFTEHYKRSDLYRRNKALIED 906
LI YFE+I GV KIKDGYNPATWMLE++ A+QE LG++F YK S+LYRRNKALI++
Sbjct: 1097 QLIEYFESIEGVPKIKDGYNPATWMLEITTAAQETTLGVNFNTLYKDSELYRRNKALIKE 1156
Query: 907 LSRPPPGSKDLYFPTQFSQSSWIQFVACLWKQHWSYWRNPPYTAVRFFFTAFIALLFGSL 966
LS P S +LYFPT++SQS +IQ +ACLWKQH SYWRNPPY+AVRF FT FIAL+FG++
Sbjct: 1157 LSVPNENSNELYFPTKYSQSFFIQCIACLWKQHLSYWRNPPYSAVRFLFTTFIALMFGTI 1216
Query: 967 FWDLGGRTKRNQDLFNAMGSMFTAVLFLGVQYCSSVQPIVSVERTVFYREKAAGMYAGIP 1026
FWDLG + QDLFNAMGSM+ AVLF+GVQ +SVQP+V++ERTVFYRE+AAGMY+ +P
Sbjct: 1217 FWDLGSKRGTQQDLFNAMGSMYAAVLFIGVQNATSVQPVVAIERTVFYRERAAGMYSALP 1276
Query: 1027 WALAQVMIEIPYILVQSVVYGAIVYAMIGFEWTAAKFFWYIFFMYFTLLFFTFYGMMAVA 1086
+A QV+IE+PYI +Q+VVYG IVY MIGFEWTAAKFFWYIFFMYFTLL+FTFYGMM VA
Sbjct: 1277 YAFGQVVIELPYIFIQTVVYGVIVYGMIGFEWTAAKFFWYIFFMYFTLLYFTFYGMMTVA 1336
Query: 1087 LTPNHHIAAIVSTLFYGLWNVFSGFIIPRPRIPIWWRWYYWANPIAWTLYGLVASQFGDM 1146
+TPNH+IAAIVS+ FYG WN+FSGFI+PR RIPIWWRWYYW P+AWTLYGLV SQFGD+
Sbjct: 1337 VTPNHNIAAIVSSAFYGFWNLFSGFIVPRTRIPIWWRWYYWICPVAWTLYGLVTSQFGDI 1396
Query: 1147 DDKKMDTGETVKQFLKDYFDFKHDFLGVVAAVLVVFAVLFGFLFALGIKMFNFQRR 1202
+D MD+ +TV +F+ +YF +K+DFLGVVAAV V VLFGF+FA IK+FNFQ+R
Sbjct: 1397 ND-PMDSNQTVAEFVSNYFGYKYDFLGVVAAVHVGITVLFGFIFAFSIKVFNFQKR 1451
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|256538311|gb|ACU82515.1| pleiotropic drug resistance protein [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1840 bits (4766), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 859/1196 (71%), Positives = 1024/1196 (85%), Gaps = 6/1196 (0%)
Query: 9 EMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEM 68
+MLTEL+RREKAA IKPDPD+D+ MKA A GQE NV+TDY LK+LGL++CADTMVGDEM
Sbjct: 260 DMLTELSRREKAANIKPDPDLDIIMKAAALGGQETNVVTDYVLKILGLEICADTMVGDEM 319
Query: 69 IRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVIS 128
RGISGGQKKRVTTGEM+VGP+ ALFMDEISTGLDSSTT+QIVN +RQ IHI +GTA+IS
Sbjct: 320 FRGISGGQKKRVTTGEMLVGPSRALFMDEISTGLDSSTTYQIVNSMRQYIHILNGTALIS 379
Query: 129 LLQPAPETYDLFDDIILLSDGQIVYQGPRELVLEFFASMGFRCPKRKGVADFLQEVTSRK 188
LLQPAPETY+LFDDIIL+SDGQ+VYQGPRE VLEFF MGF CP+RKGVADFLQEVTSRK
Sbjct: 380 LLQPAPETYELFDDIILISDGQVVYQGPRENVLEFFQHMGFTCPQRKGVADFLQEVTSRK 439
Query: 189 DQRQYWAHKEKPYRFVTVQEFAEAFQSFHVGQKISDELRTPFDKSKSHRAALTTETYGVG 248
DQ QYW +++ YRFV+V+EF+EAFQSFHVG+K+ DEL TPFDKSKSH AALTTE YG
Sbjct: 440 DQEQYWTKRDEVYRFVSVEEFSEAFQSFHVGKKLGDELATPFDKSKSHPAALTTEKYGAS 499
Query: 249 KRELLKANISRELLLMKRNSFVYIFKLIQIAFVAVVYMTLFLRTKMHKDTVTDGGIFAGA 308
K+ELLKA ISRELLLMKRNSFVYIFKLIQ+ +A V MTLF RT+MH+ TV DG ++ GA
Sbjct: 500 KKELLKACISRELLLMKRNSFVYIFKLIQLILMAFVTMTLFFRTEMHRRTVDDGSVYMGA 559
Query: 309 TFFAITMVNFNGFSEISMTIAKLPVFYKQRDFRFFPPWAYAIPSWILKIPVSFLEVAVWV 368
FFAI + FNGFSE+++TI KLPVFYKQRDF FFPPWAY+IP+WILKIP++F+EV +WV
Sbjct: 560 LFFAIIITMFNGFSELALTILKLPVFYKQRDFLFFPPWAYSIPTWILKIPITFVEVGIWV 619
Query: 369 FLSYYVVGYDSNAGRFFKQYALLLGVNQMASALFRFIAVTGRNMVVANTFGSFALLVLLS 428
++YYVVG+D NAGRFFK + +LL VNQMASALFR I GRN++VANTFGSFALL +L
Sbjct: 620 VMTYYVVGFDPNAGRFFKHFLMLLFVNQMASALFRLIGALGRNIIVANTFGSFALLTVLV 679
Query: 429 LGGFILSREDIKKWWKWAYWCSPLTYAQNAIVANEFLGHSWKKFTQDSSETLGVQVLKSR 488
LGGF+L+R+D+ WW W YW SP+ YAQN I NEFLGH W+ +S+E+LGV +LKSR
Sbjct: 680 LGGFVLARDDVHPWWIWGYWISPMMYAQNGIAVNEFLGHKWRHPAPNSNESLGVLILKSR 739
Query: 489 GFFAHEYWYWLGLGALFGFVLLLNFAYTLALTFLDPFEKPRAVITEEIESNE--QDDRIG 546
G F WYW+G+GA G++LL NF +T+AL +LDPFEKP+A++++E +++ + +
Sbjct: 740 GIFPQASWYWIGVGATIGYILLFNFLFTIALQYLDPFEKPQAIVSKETSTDKSVKKSQDV 799
Query: 547 GNVQLSTLGGSSNHNTRSGSTDDIRGQQSSSQSLSLAEAEASRPKKKGMVLPFEPHSLTF 606
++LS+ G SS+ T + + + + SS++ S +E EA++ KK+GMVLPFEPHS+TF
Sbjct: 800 QELELSSKGKSSSERTENQIS--LSSRTSSARVGSFSE-EANQNKKRGMVLPFEPHSITF 856
Query: 607 DEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRK 666
DE+ Y+VDMP+EMK QGV ED+L LL GVSG+FRPGVLTALMGVSGAGKTTLMDVLAGRK
Sbjct: 857 DEIRYAVDMPQEMKSQGVTEDRLELLKGVSGSFRPGVLTALMGVSGAGKTTLMDVLAGRK 916
Query: 667 TGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSET 726
TGGYI GNITISGYPKKQETFARI+GYCEQ DIHSP VT+YESL++SAWLRL P+VDS T
Sbjct: 917 TGGYIEGNITISGYPKKQETFARIAGYCEQTDIHSPHVTVYESLVYSAWLRLPPDVDSAT 976
Query: 727 RKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 786
RKMF++EVMEL+ELNPLR ++VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL
Sbjct: 977 RKMFVEEVMELIELNPLRDAIVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1036
Query: 787 DARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLGRHSC 846
DARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIF+AFDELFL++RGG+EIYVGP+GRHS
Sbjct: 1037 DARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDAFDELFLLRRGGEEIYVGPVGRHSS 1096
Query: 847 HLISYFEAIPGVQKIKDGYNPATWMLEVSAASQELALGIDFTEHYKRSDLYRRNKALIED 906
LI YFE+I GV KIKDGYNPATWMLE++ A+QE LG++F YK S+LYRRNKALI++
Sbjct: 1097 QLIEYFESIEGVPKIKDGYNPATWMLEITTAAQETTLGVNFNTLYKDSELYRRNKALIKE 1156
Query: 907 LSRPPPGSKDLYFPTQFSQSSWIQFVACLWKQHWSYWRNPPYTAVRFFFTAFIALLFGSL 966
LS P S +LYFPT++SQS +IQ +ACLWKQH SYWRNPPY+AVRF FT FIAL+FG++
Sbjct: 1157 LSVPNENSNELYFPTKYSQSFFIQCIACLWKQHLSYWRNPPYSAVRFLFTTFIALMFGTI 1216
Query: 967 FWDLGGRTKRNQDLFNAMGSMFTAVLFLGVQYCSSVQPIVSVERTVFYREKAAGMYAGIP 1026
FWDLG + QDLFNAMGSM+ AVLF+GVQ +SVQP+V++ERTVFYRE+AAGMY+ +P
Sbjct: 1217 FWDLGSKRGTQQDLFNAMGSMYAAVLFIGVQNATSVQPVVAIERTVFYRERAAGMYSALP 1276
Query: 1027 WALAQVMIEIPYILVQSVVYGAIVYAMIGFEWTAAKFFWYIFFMYFTLLFFTFYGMMAVA 1086
+A QV+IE+PYI +Q+VVYG IVY MIGFEWTAAKFFWYIFFMYFTLL+FTFYGMM VA
Sbjct: 1277 YAFGQVVIELPYIFIQTVVYGVIVYGMIGFEWTAAKFFWYIFFMYFTLLYFTFYGMMTVA 1336
Query: 1087 LTPNHHIAAIVSTLFYGLWNVFSGFIIPRPRIPIWWRWYYWANPIAWTLYGLVASQFGDM 1146
+TPNH+IAAIVS+ FYG WN+FSGFI+PR RIPIWWRWYYW P+AWTLYGLV SQFGD+
Sbjct: 1337 VTPNHNIAAIVSSAFYGFWNLFSGFIVPRTRIPIWWRWYYWICPVAWTLYGLVTSQFGDI 1396
Query: 1147 DDKKMDTGETVKQFLKDYFDFKHDFLGVVAAVLVVFAVLFGFLFALGIKMFNFQRR 1202
+D MD+ +TV +F+ +YF +K+DFLGVVAAV V VLFGF+FA IK+FNFQ+R
Sbjct: 1397 ND-PMDSNQTVAEFVSNYFGYKYDFLGVVAAVHVGITVLFGFIFAFSIKVFNFQKR 1451
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449483991|ref|XP_004156752.1| PREDICTED: LOW QUALITY PROTEIN: pleiotropic drug resistance protein 1-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1839 bits (4763), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 858/1196 (71%), Positives = 1024/1196 (85%), Gaps = 6/1196 (0%)
Query: 9 EMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEM 68
+MLTEL+RREKAA IKPDPD+D+ MKA A GQE NV+TDY LK+LGL++CADTMVGDEM
Sbjct: 260 DMLTELSRREKAANIKPDPDLDIIMKAAALGGQETNVVTDYVLKILGLEICADTMVGDEM 319
Query: 69 IRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVIS 128
RGISGGQKKRVTTGEM+VGP+ ALFMDEISTGLDSSTT+QIVN +RQ IHI +GTA+IS
Sbjct: 320 FRGISGGQKKRVTTGEMLVGPSRALFMDEISTGLDSSTTYQIVNSMRQYIHILNGTALIS 379
Query: 129 LLQPAPETYDLFDDIILLSDGQIVYQGPRELVLEFFASMGFRCPKRKGVADFLQEVTSRK 188
LLQPAPETY+LFDDIIL+SDGQ+VYQGPRE VLEFF MGF CP+RKGVADFLQEVTSRK
Sbjct: 380 LLQPAPETYELFDDIILISDGQVVYQGPRENVLEFFQHMGFTCPQRKGVADFLQEVTSRK 439
Query: 189 DQRQYWAHKEKPYRFVTVQEFAEAFQSFHVGQKISDELRTPFDKSKSHRAALTTETYGVG 248
DQ QYW +++ YRFV+V+EF+EAF SFHVG+K+ DEL TPFDKSKSH AALTTE YG
Sbjct: 440 DQEQYWTKRDEVYRFVSVEEFSEAFXSFHVGKKLGDELATPFDKSKSHPAALTTEKYGAS 499
Query: 249 KRELLKANISRELLLMKRNSFVYIFKLIQIAFVAVVYMTLFLRTKMHKDTVTDGGIFAGA 308
K+ELLKA ISRELLLMKRNSFVYIFKLIQ+ +A V MTLF RT+MH+ TV DG ++ GA
Sbjct: 500 KKELLKACISRELLLMKRNSFVYIFKLIQLILMAFVTMTLFFRTEMHRRTVDDGSVYMGA 559
Query: 309 TFFAITMVNFNGFSEISMTIAKLPVFYKQRDFRFFPPWAYAIPSWILKIPVSFLEVAVWV 368
FFAI ++ FNGFSE+++TI KLPVFYKQRDF FFPPWAY+IP+WILKIP++F+EV +WV
Sbjct: 560 LFFAIIIIMFNGFSELALTILKLPVFYKQRDFLFFPPWAYSIPTWILKIPITFVEVGIWV 619
Query: 369 FLSYYVVGYDSNAGRFFKQYALLLGVNQMASALFRFIAVTGRNMVVANTFGSFALLVLLS 428
++YYVVG+D NAGRFFK + +LL VNQMASALFR I GRN++VANTFGSFALL +L
Sbjct: 620 VMTYYVVGFDPNAGRFFKHFLMLLFVNQMASALFRLIGALGRNIIVANTFGSFALLTVLV 679
Query: 429 LGGFILSREDIKKWWKWAYWCSPLTYAQNAIVANEFLGHSWKKFTQDSSETLGVQVLKSR 488
LGGF+L+R+D+ WW W YW SP+ YAQN I NEFLGH W+ +S+E+LGV +LKSR
Sbjct: 680 LGGFVLARDDVHPWWIWGYWISPMMYAQNGIAVNEFLGHKWRHPAPNSNESLGVLILKSR 739
Query: 489 GFFAHEYWYWLGLGALFGFVLLLNFAYTLALTFLDPFEKPRAVITEEIESNE--QDDRIG 546
G F WYW+G+GA G++LL NF +T+AL +LDPFEKP+A++++E +++ + +
Sbjct: 740 GIFPQASWYWIGVGATIGYILLFNFLFTIALQYLDPFEKPQAIVSKETSTDKSVKKSQDV 799
Query: 547 GNVQLSTLGGSSNHNTRSGSTDDIRGQQSSSQSLSLAEAEASRPKKKGMVLPFEPHSLTF 606
++LS+ G SS+ T + + + + SS++ S +E EA++ KK+GMVLPFEPHS+TF
Sbjct: 800 QELELSSKGKSSSERTENQIS--LSSRTSSARVGSFSE-EANQNKKRGMVLPFEPHSITF 856
Query: 607 DEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRK 666
DE+ Y+VDMP+EMK QGV ED+L LL GVSG+FRPGVLTALMGVSGAGKTTLMDVLAGRK
Sbjct: 857 DEIRYAVDMPQEMKSQGVTEDRLELLKGVSGSFRPGVLTALMGVSGAGKTTLMDVLAGRK 916
Query: 667 TGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSET 726
TGGYI GNITISGYPKKQETFARI+GYCEQ DIHSP VT+YESL++SAWLRL P+VDS T
Sbjct: 917 TGGYIEGNITISGYPKKQETFARIAGYCEQTDIHSPHVTVYESLVYSAWLRLPPDVDSAT 976
Query: 727 RKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 786
RKMF++EVMEL+ELNPLR ++VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL
Sbjct: 977 RKMFVEEVMELIELNPLRDAIVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1036
Query: 787 DARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLGRHSC 846
DARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIF+AFDELFL++RGG+EIYVGP+GRHS
Sbjct: 1037 DARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDAFDELFLLRRGGEEIYVGPVGRHSS 1096
Query: 847 HLISYFEAIPGVQKIKDGYNPATWMLEVSAASQELALGIDFTEHYKRSDLYRRNKALIED 906
LI YFE+I GV KIKDGYNPATWMLE++ A+QE LG++F YK S+LYRRNKALI++
Sbjct: 1097 QLIEYFESIEGVPKIKDGYNPATWMLEITTAAQETTLGVNFNTLYKDSELYRRNKALIKE 1156
Query: 907 LSRPPPGSKDLYFPTQFSQSSWIQFVACLWKQHWSYWRNPPYTAVRFFFTAFIALLFGSL 966
LS P S +LYFPT++SQS +IQ +ACLWKQH SYWRNPPY+AVRF FT FIAL+FG++
Sbjct: 1157 LSVPNENSNELYFPTKYSQSFFIQCIACLWKQHLSYWRNPPYSAVRFLFTTFIALMFGTI 1216
Query: 967 FWDLGGRTKRNQDLFNAMGSMFTAVLFLGVQYCSSVQPIVSVERTVFYREKAAGMYAGIP 1026
FWDLG + QDLFNAMGSM+ AVLF+GVQ +SVQP+V++ERTVFYRE+AAGMY+ +P
Sbjct: 1217 FWDLGSKRGTQQDLFNAMGSMYAAVLFIGVQNATSVQPVVAIERTVFYRERAAGMYSALP 1276
Query: 1027 WALAQVMIEIPYILVQSVVYGAIVYAMIGFEWTAAKFFWYIFFMYFTLLFFTFYGMMAVA 1086
+A QV+IE+PYI +Q+VVYG IVY MIGFEWTAAKFFWYIFFMYFTLL+FTFYGMM VA
Sbjct: 1277 YAFGQVVIELPYIFIQTVVYGVIVYGMIGFEWTAAKFFWYIFFMYFTLLYFTFYGMMTVA 1336
Query: 1087 LTPNHHIAAIVSTLFYGLWNVFSGFIIPRPRIPIWWRWYYWANPIAWTLYGLVASQFGDM 1146
+TPNH+IAAIVS+ FYG WN+FSGFI+PR RIPIWWRWYYW P+AWTLYGLV SQFGD+
Sbjct: 1337 VTPNHNIAAIVSSAFYGFWNLFSGFIVPRTRIPIWWRWYYWICPVAWTLYGLVTSQFGDI 1396
Query: 1147 DDKKMDTGETVKQFLKDYFDFKHDFLGVVAAVLVVFAVLFGFLFALGIKMFNFQRR 1202
+D MD+ +TV +F+ +YF +K+DFLGVVAAV V VLFGF+FA IK+FNFQ+R
Sbjct: 1397 ND-PMDSNQTVAEFVSNYFGYKYDFLGVVAAVHVGITVLFGFIFAFSIKVFNFQKR 1451
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255546581|ref|XP_002514350.1| ATP-binding cassette transporter, putative [Ricinus communis] gi|223546806|gb|EEF48304.1| ATP-binding cassette transporter, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 1833 bits (4749), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 850/1194 (71%), Positives = 1013/1194 (84%), Gaps = 4/1194 (0%)
Query: 9 EMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEM 68
EML ELARREK A IKPDPDID+YMKA A EGQEANV+TDY LK+LGL++CADT+VGDEM
Sbjct: 260 EMLMELARREKEANIKPDPDIDIYMKAAALEGQEANVVTDYILKILGLELCADTLVGDEM 319
Query: 69 IRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVIS 128
RGISGGQKKRVTTGEM+VGPA ALFMDEISTGLDS+TTFQIVN LRQ++HI SGTA+I+
Sbjct: 320 ARGISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSTTTFQIVNSLRQSVHILSGTALIA 379
Query: 129 LLQPAPETYDLFDDIILLSDGQIVYQGPRELVLEFFASMGFRCPKRKGVADFLQEVTSRK 188
LLQPAPET++LFDDIILLSDGQIVYQGPRE VL+FF MGF+CP+RKGVADFLQEVTSRK
Sbjct: 380 LLQPAPETFELFDDIILLSDGQIVYQGPRENVLDFFEYMGFKCPERKGVADFLQEVTSRK 439
Query: 189 DQRQYWAHKEKPYRFVTVQEFAEAFQSFHVGQKISDELRTPFDKSKSHRAALTTETYGVG 248
DQ QYWAHK++PY FV+V EF+EAFQSFH+G+K+ DEL TPFDKSK+H +LTT+ YGV
Sbjct: 440 DQEQYWAHKDQPYLFVSVNEFSEAFQSFHIGRKLGDELATPFDKSKAHPDSLTTKKYGVS 499
Query: 249 KRELLKANISRELLLMKRNSFVYIFKLIQIAFVAVVYMTLFLRTKMHKDTVTDGGIFAGA 308
K+EL KA ISRE LLMKRNSFVYIFK+ Q+ + + MTLFLRT+MH++T TDGG++ GA
Sbjct: 500 KKELFKACISREYLLMKRNSFVYIFKMTQLIILGFITMTLFLRTEMHRNTETDGGVYLGA 559
Query: 309 TFFAITMVNFNGFSEISMTIAKLPVFYKQRDFRFFPPWAYAIPSWILKIPVSFLEVAVWV 368
FF +T + FNGFSE++MTI KLPVFYKQRD F+P WAYA+P+WILKIP++F+EVAVWV
Sbjct: 560 LFFTVTTIMFNGFSELAMTILKLPVFYKQRDLLFYPSWAYALPTWILKIPITFVEVAVWV 619
Query: 369 FLSYYVVGYDSNAGRFFKQYALLLGVNQMASALFRFIAVTGRNMVVANTFGSFALLVLLS 428
++YYV+G+D N RFFKQY +LL NQMASALFR A GRN++VANT G+FA+L L
Sbjct: 620 VMTYYVIGFDPNIQRFFKQYLILLITNQMASALFRLTAALGRNIIVANTVGAFAMLTALV 679
Query: 429 LGGFILSREDIKKWWKWAYWCSPLTYAQNAIVANEFLGHSWKKFTQDSSETLGVQVLKSR 488
LGGF++SR+++KKWW W YW SP+ Y QNAI NEFLG SW F +S++ LGV +LKSR
Sbjct: 680 LGGFVISRDNVKKWWIWGYWFSPMMYVQNAISVNEFLGSSWNHFPPNSTKPLGVTLLKSR 739
Query: 489 GFFAHEYWYWLGLGALFGFVLLLNFAYTLALTFLDPFEKPRAVITEEIESNEQDDRIGGN 548
G F YWYW+G GAL G++ L NF +TLAL +LDPF KP+A+I++E S + R G
Sbjct: 740 GLFPEAYWYWIGFGALTGYIFLFNFLFTLALKYLDPFGKPQAIISKEAYSEKTAVRTGEF 799
Query: 549 VQLSTLGGSSNHNTRSGSTDDIRGQQSSSQSLSLAEAEASRPKKKGMVLPFEPHSLTFDE 608
++LS+ N R ++ + ++SS +S + + A K+GMVLPF+P S+TF +
Sbjct: 800 IELSS--KEKNFQERGSASHRVASSRTSSARVS-SLSNAFENSKRGMVLPFQPLSITFAD 856
Query: 609 VVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG 668
V Y+V MP+EMK QG+ ED+L LL GVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG
Sbjct: 857 VRYAVQMPQEMKTQGITEDRLELLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG 916
Query: 669 GYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRK 728
GYI GNITISGYPKKQETFARISGYCEQ DIHSP VT+YESLL+SAWLRL PEVDS+TR
Sbjct: 917 GYIEGNITISGYPKKQETFARISGYCEQTDIHSPHVTVYESLLYSAWLRLPPEVDSDTRN 976
Query: 729 MFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 788
MF++EVMELVEL LR++LVGLPGV+GLS EQRKRLT+AVELVANPSIIFMDEPTSGLDA
Sbjct: 977 MFVEEVMELVELTSLREALVGLPGVNGLSVEQRKRLTVAVELVANPSIIFMDEPTSGLDA 1036
Query: 789 RAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLGRHSCHL 848
RAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIF+AFDEL L+KRGG+EIYVGP+GRH+CHL
Sbjct: 1037 RAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDAFDELLLLKRGGEEIYVGPVGRHACHL 1096
Query: 849 ISYFEAIPGVQKIKDGYNPATWMLEVSAASQELALGIDFTEHYKRSDLYRRNKALIEDLS 908
I YFE I G+ KIKDGYNPATWMLEV+ +QE+ALG+DF++ YK S+LYR+NKALI++LS
Sbjct: 1097 IKYFEDIEGIPKIKDGYNPATWMLEVTTTAQEVALGVDFSDIYKNSELYRKNKALIKELS 1156
Query: 909 RPPPGSKDLYFPTQFSQSSWIQFVACLWKQHWSYWRNPPYTAVRFFFTAFIALLFGSLFW 968
RP PGSKDLYFPTQ+S+S Q +ACLWKQHWSYWRNPPYTAVR F FIAL+FG++FW
Sbjct: 1157 RPLPGSKDLYFPTQYSKSFTTQCMACLWKQHWSYWRNPPYTAVRLVFATFIALMFGTIFW 1216
Query: 969 DLGGRTKRNQDLFNAMGSMFTAVLFLGVQYCSSVQPIVSVERTVFYREKAAGMYAGIPWA 1028
LG + R QD+FNAMGSM+ AVLFLG ++VQP+V++ERTVFYRE+AAGMY+ + +A
Sbjct: 1217 KLGTKRSRRQDIFNAMGSMYAAVLFLGFHNSTAVQPVVAIERTVFYRERAAGMYSALAYA 1276
Query: 1029 LAQVMIEIPYILVQSVVYGAIVYAMIGFEWTAAKFFWYIFFMYFTLLFFTFYGMMAVALT 1088
QVMIE+PYIL+Q+++YG IVYAM+GFEWT +KFFWY+FFMYFTLL+FTFYGMM VA+T
Sbjct: 1277 FGQVMIEVPYILIQTIIYGVIVYAMVGFEWTISKFFWYLFFMYFTLLYFTFYGMMNVAIT 1336
Query: 1089 PNHHIAAIVSTLFYGLWNVFSGFIIPRPRIPIWWRWYYWANPIAWTLYGLVASQFGDMDD 1148
PNH+IAAIVS+ FY +WN+FSGFI+PR RIPIWWRWYYWA PIAWTLYGLVASQFGD+ +
Sbjct: 1337 PNHNIAAIVSSAFYAIWNIFSGFIVPRTRIPIWWRWYYWACPIAWTLYGLVASQFGDIKE 1396
Query: 1149 KKMDTGETVKQFLKDYFDFKHDFLGVVAAVLVVFAVLFGFLFALGIKMFNFQRR 1202
++DTGETV+ FL+ YF F+HDF+G+VA VLV VLFGFLFA I+ FNFQRR
Sbjct: 1397 -ELDTGETVEHFLRSYFGFQHDFVGIVAVVLVGICVLFGFLFAFSIRTFNFQRR 1449
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255572793|ref|XP_002527329.1| ATP-binding cassette transporter, putative [Ricinus communis] gi|223533329|gb|EEF35081.1| ATP-binding cassette transporter, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 1828 bits (4736), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 868/1194 (72%), Positives = 1014/1194 (84%), Gaps = 20/1194 (1%)
Query: 9 EMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEM 68
EML EL+RREKAA IKPDPDIDV+MKA ATEGQE +V+TDY LK+LGL+VCADT+VG+EM
Sbjct: 261 EMLAELSRREKAANIKPDPDIDVFMKAAATEGQETSVVTDYVLKILGLEVCADTLVGNEM 320
Query: 69 IRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVIS 128
IRGISGGQKKRVTTGEM+VGPA ALFMDEISTGLDSSTT+QIVN LRQ+IHI +GTAVIS
Sbjct: 321 IRGISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVIS 380
Query: 129 LLQPAPETYDLFDDIILLSDGQIVYQGPRELVLEFFASMGFRCPKRKGVADFLQEVTSRK 188
LLQPAPETY+LFDDIIL+SDGQIVYQGPRE VL+FF MGF+CP+RKGVADFLQEVTS+K
Sbjct: 381 LLQPAPETYNLFDDIILISDGQIVYQGPREHVLDFFEYMGFKCPERKGVADFLQEVTSKK 440
Query: 189 DQRQYWAHKEKPYRFVTVQEFAEAFQSFHVGQKISDELRTPFDKSKSHRAALTTETYGVG 248
DQ+QYWA KE+PY +V V+EFAE FQS+ +G++I +EL TP+DK+KSH AAL+T+ YGVG
Sbjct: 441 DQQQYWARKEQPYTYVPVKEFAETFQSYDLGRRIGEELSTPYDKTKSHPAALSTKRYGVG 500
Query: 249 KRELLKANISRELLLMKRNSFVYIFKLIQIAFVAVVYMTLFLRTKMHKDTVTDGGIFAGA 308
K EL KA +RE LLMKRNSFV+IFKL Q+ +A + T+FLRT+M KDTVTDG I+ GA
Sbjct: 501 KMELFKACFAREYLLMKRNSFVFIFKLCQLLVMAFIGTTVFLRTEMSKDTVTDGNIYTGA 560
Query: 309 TFFAITMVNFNGFSEISMTIAKLPVFYKQRDFRFFPPWAYAIPSWILKIPVSFLEVAVWV 368
FF++ V FNG SE+SMTIAKLPVFYKQRD FFPPWAY+IPSWILKIP++FLEV VWV
Sbjct: 561 LFFSLITVMFNGMSELSMTIAKLPVFYKQRDLLFFPPWAYSIPSWILKIPITFLEVGVWV 620
Query: 369 FLSYYVVGYDSNAGRFFKQYALLLGVNQMASALFRFIAVTGRNMVVANTFGSFALLVLLS 428
F++YYV+G+D N R F+Q+ LLL VNQMAS LFRFIA GRNM++ANTFGSFALL L +
Sbjct: 621 FITYYVMGFDPNVERLFRQFFLLLLVNQMASGLFRFIASVGRNMIIANTFGSFALLTLFA 680
Query: 429 LGGFILSREDIKKWWKWAYWCSPLTYAQNAIVANEFLGHSWKKFTQDSSETLGVQVLKSR 488
LGGF+LSREDIKKWW W +W SPL Y QNAI+ NEFLGHSW T S+++LGVQVL SR
Sbjct: 681 LGGFVLSREDIKKWWIWGFWVSPLMYGQNAILVNEFLGHSWTNST--SNDSLGVQVLSSR 738
Query: 489 GFFAHEYWYWLGLGALFGFVLLLNFAYTLALTFLDPFEKPRAVITEEIESNEQDDRIGGN 548
GFF WYWLG+ A G+++L N YT+ALT L FEKP AVI ++ ES+ D GG
Sbjct: 739 GFFTESKWYWLGVIASAGYMVLFNILYTIALTVLGSFEKPTAVIADDHESS---DVTGGA 795
Query: 549 VQLSTLGGSSNHNTRSGSTDDIRGQQSSSQSLSLAEAEASRPKKKGMVLPFEPHSLTFDE 608
+QLS + S NT SG++ EA++ KKKGMVLPFEPHSLTFD
Sbjct: 796 IQLSQVESSRRSNTESGTS---------------RHDEANQSKKKGMVLPFEPHSLTFDN 840
Query: 609 VVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG 668
V+YSVDMP+EM+ QGVLEDKLVLL GVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG
Sbjct: 841 VIYSVDMPQEMRNQGVLEDKLVLLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG 900
Query: 669 GYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRK 728
GYI GNITISGYPKKQETFARISGYCEQNDIHSP VT+YESL++SAWLRL EVDS+TRK
Sbjct: 901 GYIEGNITISGYPKKQETFARISGYCEQNDIHSPHVTVYESLVYSAWLRLPAEVDSDTRK 960
Query: 729 MFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 788
MF++EV++LVELN R SLVGLPGV+GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA
Sbjct: 961 MFVEEVIDLVELNAQRNSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 1020
Query: 789 RAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLGRHSCHL 848
RAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGG+EIYVGPLGRHSCHL
Sbjct: 1021 RAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGEEIYVGPLGRHSCHL 1080
Query: 849 ISYFEAIPGVQKIKDGYNPATWMLEVSAASQELALGIDFTEHYKRSDLYRRNKALIEDLS 908
I+YFE + GV K+ DGYNPATWMLEV++++QEL LG+DF Y+ SDLYRRNKA+I++LS
Sbjct: 1081 INYFEGLEGVSKVTDGYNPATWMLEVTSSAQELTLGVDFANLYRNSDLYRRNKAMIQELS 1140
Query: 909 RPPPGSKDLYFPTQFSQSSWIQFVACLWKQHWSYWRNPPYTAVRFFFTAFIALLFGSLFW 968
+P PG+KDLYFPTQ+SQS Q +ACLWKQ+WSYWRNPPYTAVRF+FT FIAL+FG++FW
Sbjct: 1141 KPAPGTKDLYFPTQYSQSFLTQCMACLWKQYWSYWRNPPYTAVRFWFTTFIALMFGTIFW 1200
Query: 969 DLGGRTKRNQDLFNAMGSMFTAVLFLGVQYCSSVQPIVSVERTVFYREKAAGMYAGIPWA 1028
DLG +T QDL NAMGSM+ AVLFLGVQ SSVQP+V+VERTVFYRE+AAGMY+ +P+A
Sbjct: 1201 DLGSKTSEPQDLTNAMGSMYAAVLFLGVQNSSSVQPVVAVERTVFYRERAAGMYSAMPYA 1260
Query: 1029 LAQVMIEIPYILVQSVVYGAIVYAMIGFEWTAAKFFWYIFFMYFTLLFFTFYGMMAVALT 1088
AQ +IE+PYI VQS Y I YAMIGFEW AAKF WY+FF+YFTL++FTFYGMMAVA T
Sbjct: 1261 YAQALIEVPYIFVQSAAYSIITYAMIGFEWDAAKFLWYLFFLYFTLMYFTFYGMMAVAFT 1320
Query: 1089 PNHHIAAIVSTLFYGLWNVFSGFIIPRPRIPIWWRWYYWANPIAWTLYGLVASQFGDMDD 1148
PNHHIA+IVS+ FY +WNVF+GFI+PR R+P+WWRWYYW PI+WTLYGL+ASQ+GD+
Sbjct: 1321 PNHHIASIVSSAFYSIWNVFAGFIVPRTRLPVWWRWYYWGCPISWTLYGLIASQYGDVKT 1380
Query: 1149 KKMDTGETVKQFLKDYFDFKHDFLGVVAAVLVVFAVLFGFLFALGIKMFNFQRR 1202
G+TV++++++++ KHDFLGV AAV+V + F F+FA+ IK FNFQRR
Sbjct: 1381 LIGSDGQTVEEYVEEFYGMKHDFLGVTAAVIVGITIGFAFIFAVSIKAFNFQRR 1434
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 1202 | ||||||
| TAIR|locus:2025931 | 1469 | PEN3 "PENETRATION 3" [Arabidop | 0.985 | 0.805 | 0.545 | 0.0 | |
| TAIR|locus:2196593 | 1423 | ABCG40 "ATP-binding cassette G | 0.509 | 0.430 | 0.710 | 0.0 | |
| TAIR|locus:2019693 | 1454 | ABCG39 "ATP-binding cassette G | 0.508 | 0.420 | 0.615 | 0.0 | |
| TAIR|locus:2037703 | 1442 | ABCG35 "ATP-binding cassette G | 0.508 | 0.423 | 0.608 | 0.0 | |
| TAIR|locus:2039523 | 1420 | ABCG32 "ATP-binding cassette G | 0.508 | 0.430 | 0.606 | 0.0 | |
| TAIR|locus:2044893 | 1453 | ABCG34 "ATP-binding cassette G | 0.508 | 0.420 | 0.612 | 0.0 | |
| TAIR|locus:2094952 | 1416 | ABCG29 "ATP-binding cassette G | 0.508 | 0.431 | 0.601 | 0.0 | |
| TAIR|locus:2045683 | 1426 | ABCG31 "ATP-binding cassette G | 0.508 | 0.428 | 0.578 | 0.0 | |
| TAIR|locus:2084081 | 1450 | ABCG37 "ATP-binding cassette G | 0.505 | 0.419 | 0.532 | 3e-311 | |
| TAIR|locus:2049867 | 1413 | ABCG33 "ATP-binding cassette G | 0.505 | 0.430 | 0.519 | 9.4e-306 |
| TAIR|locus:2025931 PEN3 "PENETRATION 3" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 3424 (1210.4 bits), Expect = 0., P = 0.
Identities = 654/1200 (54%), Positives = 843/1200 (70%)
Query: 9 EMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEM 68
++L ELARREK AGI P+ D+D++MKA A +G + +++TDY LK+LGLD+C DT+VGD+M
Sbjct: 280 DLLNELARREKDAGIFPEADVDLFMKASAAQGVKNSLVTDYTLKILGLDICKDTIVGDDM 339
Query: 69 IRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVIS 128
+RGISGGQKKRVTTGEM+VGP LFMDEISTGLDSSTTFQIV CL+Q +H+N T ++S
Sbjct: 340 MRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTFQIVKCLQQIVHLNEATVLMS 399
Query: 129 LLQPAPETYDLFDDIILLSDGQIVYQGPRELVLEFFASMGFRCPKRKGVADFLQEVTSRK 188
LLQPAPET+DLFDDIIL+S+GQIVYQGPR+ +LEFF S GF+CP+RKG ADFLQEVTS+K
Sbjct: 400 LLQPAPETFDLFDDIILVSEGQIVYQGPRDNILEFFESFGFKCPERKGTADFLQEVTSKK 459
Query: 189 DQRQYWAHKEKPYRFVTVQEFAEAFQSFHVGQKISDELRTPFDKSKSHRAALTTETYGVG 248
DQ QYW + +PY ++ V EFA ++SFHVG K+S+EL PFDKS+ H+AAL + Y V
Sbjct: 460 DQEQYWVNPNRPYHYIPVSEFASRYKSFHVGTKMSNELAVPFDKSRGHKAALVFDKYSVS 519
Query: 249 KRELLKANISRELLLMKRNSFVYIFKLIQIAFVAVVYMTLFLRTKMHKDTVTDGGIFAGA 308
KRELLK+ +E LLM+RN+F Y+FK +QI +A + TLFLRT+M+ D ++ GA
Sbjct: 520 KRELLKSCWDKEWLLMQRNAFFYVFKTVQIVIIAAITSTLFLRTEMNTRNEGDANLYIGA 579
Query: 309 TFFAITMVNFNGFSEISMTIAKLPVFYKQRDFRFFPPWAYAIPSWILKIPVSFLEVAVWV 368
F + + FNGF+E++M +++LPVFYKQRD F+P W +++P+++L IP S LE W+
Sbjct: 580 LLFGMIINMFNGFAEMAMMVSRLPVFYKQRDLLFYPSWTFSLPTFLLGIPSSILESTAWM 639
Query: 369 FLSYYVVGYDSNAGRFFKQYALLLGVNQMASALFRFIAVTGRNMVVANTXXXXXXXXXXX 428
++YY +G+ +A RFFKQ+ L+ + QMA++LFR IA R M++ANT
Sbjct: 640 VVTYYSIGFAPDASRFFKQFLLVFLIQQMAASLFRLIASVCRTMMIANTGGALTLLLVFL 699
Query: 429 XXXXXXXREDIKKWWKWAYWCSPLTYAQNAIVANEFLGHSW--KKFTQDSSETLGVQVLK 486
+ I WW WAYW SPLTYA N +V NE W K + +S+ LG VL
Sbjct: 700 LGGFLLPKGKIPDWWGWAYWVSPLTYAFNGLVVNEMFAPRWMNKMASSNSTIKLGTMVLN 759
Query: 487 SRGFFAHEYWYWXXXXXXXXXXXXXXXAYTLALTFLDPFEKPRAVITEEIESNEQDDRIG 546
+ + + WYW +TLALT+L+P K ++ EE NE D+ G
Sbjct: 760 TWDVYHQKNWYWISVGALLCFTALFNILFTLALTYLNPLGKKAGLLPEE--ENEDADQ-G 816
Query: 547 GNVQLSTLGGSSNHNTRSGSTDDIRGXXXXXXXXXXXXXXXXRPKKKGMVLPFEPHSLTF 606
+ +L S+ R G G KKGMVLPF P +++F
Sbjct: 817 KDPMRRSL--STADGNRRGEV--AMGRMSRDSAAEASGGAG---NKKGMVLPFTPLAMSF 869
Query: 607 DEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRK 666
D+V Y VDMP EM+ QGV E +L LL GV+GAFRPGVLTALMGVSGAGKTTLMDVLAGRK
Sbjct: 870 DDVKYFVDMPGEMRDQGVTETRLQLLKGVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRK 929
Query: 667 TGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSET 726
TGGYI G++ ISG+PK QETFARISGYCEQ DIHSP VT+ ESL+FSA+LRL EV +
Sbjct: 930 TGGYIEGDVRISGFPKVQETFARISGYCEQTDIHSPQVTVRESLIFSAFLRLPKEVGKDE 989
Query: 727 RKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 786
+ MF+D+VMELVEL+ LR S+VGLPGV+GLSTEQRKRLTIAVELVANPSIIFMDEPTSGL
Sbjct: 990 KMMFVDQVMELVELDSLRDSIVGLPGVTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1049
Query: 787 DARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLGRHSC 846
DARAAAIVMR VRNTVDTGRTVVCTIHQPSIDIFEAFDEL LMKRGGQ IY GPLG++S
Sbjct: 1050 DARAAAIVMRAVRNTVDTGRTVVCTIHQPSIDIFEAFDELMLMKRGGQVIYAGPLGQNSH 1109
Query: 847 HLISYFEAIPGVQKIKDGYNPATWMLEVSAASQELALGIDFTEHYKRSDLYRRNKALIED 906
++ YFE+ PGV KI + YNPATWMLE S+ + EL L +DF E Y +S L++RNKAL+++
Sbjct: 1110 KVVEYFESFPGVSKIPEKYNPATWMLEASSLAAELKLSVDFAELYNQSALHQRNKALVKE 1169
Query: 907 LSRPPPGSKDLYFPTQFSQSSWIQFVACLWKQHWSYWRNPPYTAVRFFFTAFIALLFGSL 966
LS PP G+ DLYF TQFSQ++W QF +CLWKQ W+YWR+P Y VRF FT +LL G++
Sbjct: 1170 LSVPPAGASDLYFATQFSQNTWGQFKSCLWKQWWTYWRSPDYNLVRFIFTLATSLLIGTV 1229
Query: 967 FWDLGGRTKRNQDLFNAMGSMFTAVLFLGVQYCSSVQPIVSVERTVFYREKAAGMYAGIP 1026
FW +GG DL +G+++ A++F+G+ CS+VQP+V+VERTVFYRE+AAGMY+ +P
Sbjct: 1230 FWQIGGNRSNAGDLTMVIGALYAAIIFVGINNCSTVQPMVAVERTVFYRERAAGMYSAMP 1289
Query: 1027 WALAQVMIEIPYILVQSVVYGAIVYAMIGFEWTAAKFFWYIXXXXXXXXXXXXXXXMAVA 1086
+A++QV E+PY+L+Q+V Y IVYAM+GFEW A KFFW++ M V+
Sbjct: 1290 YAISQVTCELPYVLIQTVYYSLIVYAMVGFEWKAEKFFWFVFVSYFSFLYWTYYGMMTVS 1349
Query: 1087 LTPNHHIAAIVSTLFYGLWNVFSGFXXXXXXXXXXXXXYYWANPIAWTLYGLVASQFGDM 1146
LTPN +A+I ++ FYG++N+FSGF YYW P+AWT+YGL+ SQ+GD+
Sbjct: 1350 LTPNQQVASIFASAFYGIFNLFSGFFIPRPKIPKWWIWYYWICPVAWTVYGLIVSQYGDV 1409
Query: 1147 DDKKMDTGE----TVKQFLKDYFDFKHDXXXXXXXXXXXXXXXXXXXXXXXIKMFNFQRR 1202
+ + G TVKQ+++D++ F+ D I+ NFQ R
Sbjct: 1410 ETRIQVLGGAPDLTVKQYIEDHYGFQSDFMGPVAAVLIAFTVFFAFIFAFCIRTLNFQTR 1469
|
|
| TAIR|locus:2196593 ABCG40 "ATP-binding cassette G40" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2313 (819.3 bits), Expect = 0., Sum P(2) = 0.
Identities = 435/612 (71%), Positives = 499/612 (81%)
Query: 591 KKKGMVLPFEPHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGV 650
KK+GMVLPFEPHS+TFD VVYSVDMP+EM QG ED+LVLL GV+GAFRPGVLTALMGV
Sbjct: 812 KKRGMVLPFEPHSITFDNVVYSVDMPQEMIEQGTQEDRLVLLKGVNGAFRPGVLTALMGV 871
Query: 651 SGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESL 710
SGAGKTTLMDVLAGRKTGGYI GNITISGYPK Q+TFARISGYCEQ DIHSP VT+YESL
Sbjct: 872 SGAGKTTLMDVLAGRKTGGYIDGNITISGYPKNQQTFARISGYCEQTDIHSPHVTVYESL 931
Query: 711 LFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVEL 770
++SAWLRL EVD RK+FI+EVMELVEL PLRQ+LVGLPG SGLSTEQRKRLTIAVEL
Sbjct: 932 VYSAWLRLPKEVDKNKRKIFIEEVMELVELTPLRQALVGLPGESGLSTEQRKRLTIAVEL 991
Query: 771 VANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 830
VANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFL+K
Sbjct: 992 VANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLLK 1051
Query: 831 RGGQEIYVGPLGRHSCHLISYFEAIPGVQKIKDGYNPATWMLEVSAASQELALGIDFTEH 890
RGG+EIYVGPLG S HLI+YFE+I G+ KI +GYNPATWMLEVS SQE ALG+DF +
Sbjct: 1052 RGGEEIYVGPLGHESTHLINYFESIQGINKITEGYNPATWMLEVSTTSQEAALGVDFAQV 1111
Query: 891 YKRSDLYRRNKALIEDLSRPPPGSKDLYFPTQFSQSSWIQFVACLWKQHWSYWRNPPYTA 950
YK S+LY+RNK LI++LS+P PGSKDLYFPTQ+SQS Q +A LWKQHWSYWRNPPYTA
Sbjct: 1112 YKNSELYKRNKELIKELSQPAPGSKDLYFPTQYSQSFLTQCMASLWKQHWSYWRNPPYTA 1171
Query: 951 VRFFFTAFIALLFGSLFWDLGGRTKRNQDLFNAMGSMFTAVLFLGVQYCSSVQPIVSVER 1010
VRF FT IAL+FG++FWDLGG+TK QDL NAMGSM+TAVLFLG+Q +SVQP+V+VER
Sbjct: 1172 VRFLFTIGIALMFGTMFWDLGGKTKTRQDLSNAMGSMYTAVLFLGLQNAASVQPVVNVER 1231
Query: 1011 TVFYREKAAGMYAGIPWALAQVMIEIPYILVQSVVYGAIVYAMIGFEWTAAKFFWYIXXX 1070
TVFYRE+AAGMY+ +P+A AQV IEIPY+LVQ++VYG IVYAMIGFEWTA KFFWY+
Sbjct: 1232 TVFYREQAAGMYSAMPYAFAQVFIEIPYVLVQAIVYGLIVYAMIGFEWTAVKFFWYLFFM 1291
Query: 1071 XXXXXXXXXXXXMAVALTPNHHIAAIVSTLFYGLWNVFSGFXXXXXXXXXXXXXYYWANP 1130
MAVA+TPNHHIA++VS+ FYG+WN+FSGF YYW P
Sbjct: 1292 YGSFLTFTFYGMMAVAMTPNHHIASVVSSAFYGIWNLFSGFLIPRPSMPVWWEWYYWLCP 1351
Query: 1131 IAWTLYGLVASQFGDMDDKKMDTGETVKQFLKDYFDFKHDXXXXXXXXXXXXXXXXXXXX 1190
+AWTLYGL+ASQFGD+ + D+ +VKQF+++++ ++
Sbjct: 1352 VAWTLYGLIASQFGDITEPMADSNMSVKQFIREFYGYREGFLGVVAAMNVIFPLLFAVIF 1411
Query: 1191 XXXIKMFNFQRR 1202
IK FNFQ+R
Sbjct: 1412 AIGIKSFNFQKR 1423
|
|
| TAIR|locus:2019693 ABCG39 "ATP-binding cassette G39" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1968 (697.8 bits), Expect = 0., Sum P(2) = 0.
Identities = 378/614 (61%), Positives = 448/614 (72%)
Query: 592 KKGMVLPFEPHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVS 651
K+GMVLPF+P SL F+ V Y VDMP EMK QGV D+L LL V GAFRPG+LTAL+GVS
Sbjct: 841 KRGMVLPFQPLSLAFNNVNYYVDMPSEMKAQGVEGDRLQLLRDVGGAFRPGILTALVGVS 900
Query: 652 GAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESLL 711
GAGKTTLMDVLAGRKTGGYI G+I+ISGYPK Q TFAR+SGYCEQNDIHSP VT+YESL+
Sbjct: 901 GAGKTTLMDVLAGRKTGGYIEGSISISGYPKNQTTFARVSGYCEQNDIHSPHVTVYESLI 960
Query: 712 FSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELV 771
+SAWLRLS ++D +TR++F++EVMELVEL PLR S+VGLPGV GLSTEQRKRLTIAVELV
Sbjct: 961 YSAWLRLSTDIDIKTRELFVEEVMELVELKPLRNSIVGLPGVDGLSTEQRKRLTIAVELV 1020
Query: 772 ANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKR 831
ANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFE+FDEL LMKR
Sbjct: 1021 ANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDELLLMKR 1080
Query: 832 GGQEIYVGPLGRHSCHLISYFEAIPGVQKIKDGYNPATWMLEVSAASQELALGIDFTEHY 891
GGQ IY G LG HS L+ YFEA+ GV KI DGYNPATWML+V+ S E + +DF + +
Sbjct: 1081 GGQVIYAGSLGHHSQKLVEYFEAVEGVPKINDGYNPATWMLDVTTPSMESQMSLDFAQIF 1140
Query: 892 KRSDLYRRNKALIEDLSRPPPGSKDLYFPTQFSQSSWIQFVACLWKQHWSYWRNPPYTAV 951
S LYRRN+ LI+DLS PPPGSKD+YF T+++QS Q AC WKQ+WSYWR+P Y A+
Sbjct: 1141 SNSSLYRRNQELIKDLSTPPPGSKDVYFKTKYAQSFSTQTKACFWKQYWSYWRHPQYNAI 1200
Query: 952 RFFFTAFIALLFGSLFWDLGGRTKRNQDLFNAMGSMFTAVLFLGVQYCSSVQPIVSVERT 1011
RF T I +LFG +FW +G +T+ QDL N G+M+ AVLFLG ++VQP +++ERT
Sbjct: 1201 RFLMTVVIGVLFGLIFWQIGTKTENEQDLNNFFGAMYAAVLFLGALNAATVQPAIAIERT 1260
Query: 1012 VFYREKAAGMYAGIPWALAQVMIEIPYILVQSVVYGAIVYAMIGFEWTAAKFFWYIXXXX 1071
VFYREKAAGMY+ IP+A++QV +EI Y +Q+ VY I+Y+MIG WT AKF W+
Sbjct: 1261 VFYREKAAGMYSAIPYAISQVAVEIMYNTIQTGVYTLILYSMIGCNWTMAKFLWFYYYML 1320
Query: 1072 XXXXXXXXXXXMAVALTPNHHIAAIVSTLFYGLWNVFSGFXXXXXXXXXXXXXYYWANPI 1131
M +ALTPN+ IA I + F LWN+FSGF YYWA P+
Sbjct: 1321 TSFIYFTLYGMMLMALTPNYQIAGICMSFFLSLWNLFSGFLIPRPQIPIWWRWYYWATPV 1380
Query: 1132 AWTLYGLVASQFGDMDDKKMDTGE---TVKQFLKDYFDFKHDXXXXXXXXXXXXXXXXXX 1188
AWTLYGL+ SQ GD D +G +K LK+ F F+HD
Sbjct: 1381 AWTLYGLITSQVGDKDSMVHISGIGDIDLKTLLKEGFGFEHDFLPVVAVVHIAWILLFLF 1440
Query: 1189 XXXXXIKMFNFQRR 1202
IK NFQRR
Sbjct: 1441 VFAYGIKFLNFQRR 1454
|
|
| TAIR|locus:2037703 ABCG35 "ATP-binding cassette G35" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1961 (695.4 bits), Expect = 0., Sum P(2) = 0.
Identities = 374/615 (60%), Positives = 459/615 (74%)
Query: 592 KKGMVLPFEPHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVS 651
KKGMVLPF P +++FD+V Y VDMP EM+ QGV E +L LL GV+ AFRPGVLTALMGVS
Sbjct: 828 KKGMVLPFTPLAMSFDDVKYFVDMPAEMREQGVQETRLQLLKGVTSAFRPGVLTALMGVS 887
Query: 652 GAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESLL 711
GAGKTTLMDVLAGRKTGGYI G++ +SG+PKKQETFARISGYCEQ DIHSP VT+ ESL+
Sbjct: 888 GAGKTTLMDVLAGRKTGGYIEGDVRVSGFPKKQETFARISGYCEQTDIHSPQVTVRESLI 947
Query: 712 FSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELV 771
FSA+LRL+ EV E + MF+D+VMELVEL LR ++VGLPGV+GLSTEQRKRLTIAVELV
Sbjct: 948 FSAFLRLAKEVSKEDKLMFVDQVMELVELVDLRDAIVGLPGVTGLSTEQRKRLTIAVELV 1007
Query: 772 ANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKR 831
ANPSIIFMDEPTSGLDARAAAIVMR VRNTVDTGRTVVCTIHQPSIDIFEAFDEL LMKR
Sbjct: 1008 ANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKR 1067
Query: 832 GGQEIYVGPLGRHSCHLISYFEAIPGVQKIKDGYNPATWMLEVSAASQELALGIDFTEHY 891
GG IY GPLGR+S ++ YFE+ PGV KI + YNPATWMLE S+ + EL LG+DF E Y
Sbjct: 1068 GGHVIYSGPLGRNSHKVVEYFESFPGVPKIPEKYNPATWMLEASSLAAELKLGVDFAELY 1127
Query: 892 KRSDLYRRNKALIEDLSRPPPGSKDLYFPTQFSQSSWIQFVACLWKQHWSYWRNPPYTAV 951
K S L +RNKAL+++LS PP G+ DLYF TQFSQ++W QF +CLWKQ W+YWR+P Y V
Sbjct: 1128 KASALCQRNKALVQELSVPPQGATDLYFATQFSQNTWGQFKSCLWKQWWTYWRSPDYNLV 1187
Query: 952 RFFFTAFIALLFGSLFWDLGGRTKRNQDLFNAMGSMFTAVLFLGVQYCSSVQPIVSVERT 1011
RF FT +L+ GS+FW +GG+ QDL +G+++ AV+F+G+ CS+VQP+V+VERT
Sbjct: 1188 RFIFTLATSLMIGSVFWQIGGKRSNVQDLTMVIGAIYAAVVFVGINNCSTVQPMVAVERT 1247
Query: 1012 VFYREKAAGMYAGIPWALAQVMIEIPYILVQSVVYGAIVYAMIGFEWTAAKFFWYIXXXX 1071
VFYREKAAGMY+ IP+A++QV E+PY+L+Q+ Y I+Y+M+GFEW A+KF W+I
Sbjct: 1248 VFYREKAAGMYSAIPYAISQVTCELPYVLIQTTYYSLIIYSMVGFEWKASKFLWFIFINY 1307
Query: 1072 XXXXXXXXXXXMAVALTPNHHIAAIVSTLFYGLWNVFSGFXXXXXXXXXXXXXYYWANPI 1131
M V+LTPN +A+I ++ FYG++N+FSGF YYW P+
Sbjct: 1308 FSFLYWTYYGMMTVSLTPNQQVASIFASAFYGIFNLFSGFFIPRPKIPKWWVWYYWICPV 1367
Query: 1132 AWTLYGLVASQFGDMDDKKM----DTGETVKQFLKDYFDFKHDXXXXXXXXXXXXXXXXX 1187
AWT+YGL+ SQ+GD++ G TVKQ++KD + F+ D
Sbjct: 1368 AWTIYGLITSQYGDVETPIALLGGAPGLTVKQYIKDQYGFESDYMGPVAGVLVGFTVFFA 1427
Query: 1188 XXXXXXIKMFNFQRR 1202
IK NFQ R
Sbjct: 1428 FIFAFCIKTLNFQSR 1442
|
|
| TAIR|locus:2039523 ABCG32 "ATP-binding cassette G32" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1952 (692.2 bits), Expect = 0., Sum P(2) = 0.
Identities = 374/617 (60%), Positives = 459/617 (74%)
Query: 591 KKKGMVLPFEPHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGV 650
K +GMVLPF+P SL+F + Y VD+P +K QG+LED+L LL ++GAFRPGVLTAL+GV
Sbjct: 805 KNRGMVLPFQPLSLSFSNINYYVDVPLGLKEQGILEDRLQLLVNITGAFRPGVLTALVGV 864
Query: 651 SGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESL 710
SGAGKTTLMDVLAGRKTGG I G++ ISG+PK+QETFARISGYCEQND+HSP +T+ ESL
Sbjct: 865 SGAGKTTLMDVLAGRKTGGTIEGDVYISGFPKRQETFARISGYCEQNDVHSPCLTVVESL 924
Query: 711 LFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVEL 770
LFSA LRL ++DSET++ F+ EVMELVEL L +LVGLPGV GLSTEQRKRLTIAVEL
Sbjct: 925 LFSACLRLPADIDSETQRAFVHEVMELVELTSLSGALVGLPGVDGLSTEQRKRLTIAVEL 984
Query: 771 VANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 830
VANPSI+FMDEPTSGLDARAAAIVMRTVRN V+TGRT+VCTIHQPSIDIFE+FDEL MK
Sbjct: 985 VANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMK 1044
Query: 831 RGGQEIYVGPLGRHSCHLISYFEAIPGVQKIKDGYNPATWMLEVSAASQELALGIDFTEH 890
RGG+ IY GPLG+ SC LI YFE+I GVQKIK G+NPA WML+V+A+++E LG+DF E
Sbjct: 1045 RGGELIYAGPLGQKSCELIKYFESIEGVQKIKPGHNPAAWMLDVTASTEEHRLGVDFAEI 1104
Query: 891 YKRSDLYRRNKALIEDLSRPPPGSKDLYFPTQFSQSSWIQFVACLWKQHWSYWRNPPYTA 950
Y+ S+L +RNK LIE LS+P +K++ FPT++SQS + QFVACLWKQ+ SYWRNP YTA
Sbjct: 1105 YRNSNLCQRNKELIEVLSKPSNIAKEIEFPTRYSQSLYSQFVACLWKQNLSYWRNPQYTA 1164
Query: 951 VRFFFTAFIALLFGSLFWDLGGRTKRNQDLFNAMGSMFTAVLFLGVQYCSSVQPIVSVER 1010
VRFF+T I+L+ G++ W G + Q LFNAMGSM+ AVLF+G+ ++ QP+VS+ER
Sbjct: 1165 VRFFYTVVISLMLGTICWKFGSKRDTQQQLFNAMGSMYAAVLFIGITNATAAQPVVSIER 1224
Query: 1011 TVFYREKAAGMYAGIPWALAQVMIEIPYILVQSVVYGAIVYAMIGFEWTAAKFFWYIXXX 1070
V YRE+AAGMY+ +P+A AQV IE PY+L QS +Y I YAM FEW+A KF WY+
Sbjct: 1225 FVSYRERAAGMYSALPFAFAQVFIEFPYVLAQSTIYSTIFYAMAAFEWSAVKFLWYLFFM 1284
Query: 1071 XXXXXXXXXXXXMAVALTPNHHIAAIVSTLFYGLWNVFSGFXXXXXXXXXXXXXYYWANP 1130
M A+TPNH++A+I++ FY LWN+FSGF YYWANP
Sbjct: 1285 YFSIMYFTFYGMMTTAITPNHNVASIIAAPFYMLWNLFSGFMIPYKRIPLWWRWYYWANP 1344
Query: 1131 IAWTLYGLVASQFGDMDDK--KMDTG---ETVKQFLKDYFDFKHDXXXXXXXXXXXXXXX 1185
+AWTLYGL+ SQ+GD D++ K+ G VKQ L+D +KHD
Sbjct: 1345 VAWTLYGLLVSQYGD-DERSVKLSDGIHQVMVKQLLEDVMGYKHDFLGVSAIMVVAFCVF 1403
Query: 1186 XXXXXXXXIKMFNFQRR 1202
IK FNFQRR
Sbjct: 1404 FSLVFAFAIKAFNFQRR 1420
|
|
| TAIR|locus:2044893 ABCG34 "ATP-binding cassette G34" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1938 (687.3 bits), Expect = 0., Sum P(2) = 0.
Identities = 376/614 (61%), Positives = 444/614 (72%)
Query: 592 KKGMVLPFEPHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVS 651
KKGMVLPF+P SL F+ V Y VDMP EMK QGV D+L LL V GAFRPGVLTAL+GVS
Sbjct: 840 KKGMVLPFQPLSLAFNNVNYYVDMPAEMKAQGVEGDRLQLLRDVGGAFRPGVLTALVGVS 899
Query: 652 GAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESLL 711
GAGKTTLMDVLAGRKTGGY+ G+I ISGYPK Q TFAR+SGYCEQNDIHSP VT+YESL+
Sbjct: 900 GAGKTTLMDVLAGRKTGGYVEGSINISGYPKNQATFARVSGYCEQNDIHSPHVTVYESLI 959
Query: 712 FSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELV 771
+SAWLRLS ++D++TR+MF++EVMELVEL PLR S+VGLPGV GLSTEQRKRLTIAVELV
Sbjct: 960 YSAWLRLSADIDTKTREMFVEEVMELVELKPLRNSIVGLPGVDGLSTEQRKRLTIAVELV 1019
Query: 772 ANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKR 831
ANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFE+FDEL LMKR
Sbjct: 1020 ANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDELLLMKR 1079
Query: 832 GGQEIYVGPLGRHSCHLISYFEAIPGVQKIKDGYNPATWMLEVSAASQELALGIDFTEHY 891
GGQ IY G LG HS L+ YFEAI GV KIKDGYNPATWML+V+ S E + +DF + +
Sbjct: 1080 GGQVIYAGTLGHHSQKLVEYFEAIEGVPKIKDGYNPATWMLDVTTPSMESQMSVDFAQIF 1139
Query: 892 KRSDLYRRNKALIEDLSRPPPGSKDLYFPTQFSQSSWIQFVACLWKQHWSYWRNPPYTAV 951
S + RRN+ LI++LS PPPGS DLYF T+++Q Q AC WK +WS WR P Y A+
Sbjct: 1140 VNSSVNRRNQELIKELSTPPPGSNDLYFRTKYAQPFSTQTKACFWKMYWSNWRYPQYNAI 1199
Query: 952 RFFFTAFIALLFGSLFWDLGGRTKRNQDLFNAMGSMFTAVLFLGVQYCSSVQPIVSVERT 1011
RF T I +LFG LFW G + ++ QDL N G+M+ AVLFLG ++VQP V++ERT
Sbjct: 1200 RFLMTVVIGVLFGLLFWQTGTKIEKEQDLNNFFGAMYAAVLFLGATNAATVQPAVAIERT 1259
Query: 1012 VFYREKAAGMYAGIPWALAQVMIEIPYILVQSVVYGAIVYAMIGFEWTAAKFFWYIXXXX 1071
VFYREKAAGMY+ IP+A++QV +EI Y +Q+ VY I+Y+MIG++WT KFFW+
Sbjct: 1260 VFYREKAAGMYSAIPYAISQVAVEIMYNTIQTGVYTLILYSMIGYDWTVVKFFWFYYYML 1319
Query: 1072 XXXXXXXXXXXMAVALTPNHHIAAIVSTLFYGLWNVFSGFXXXXXXXXXXXXXYYWANPI 1131
M VALTPN+ IA I + F WN+FSGF YYWA+P+
Sbjct: 1320 TCFVYFTLYGMMLVALTPNYQIAGICLSFFLSFWNLFSGFLIPRPQIPIWWRWYYWASPV 1379
Query: 1132 AWTLYGLVASQFGDMDDKKMDTGE---TVKQFLKDYFDFKHDXXXXXXXXXXXXXXXXXX 1188
AWTLYG++ SQ GD D TG ++K LK+ F F +D
Sbjct: 1380 AWTLYGIITSQVGDRDSIVHITGVGDMSLKTLLKNGFGFDYDFLPVVAVVHIAWILIFLF 1439
Query: 1189 XXXXXIKMFNFQRR 1202
IK NFQRR
Sbjct: 1440 AFAYGIKFLNFQRR 1453
|
|
| TAIR|locus:2094952 ABCG29 "ATP-binding cassette G29" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1906 (676.0 bits), Expect = 0., Sum P(2) = 0.
Identities = 370/615 (60%), Positives = 454/615 (73%)
Query: 592 KKGMVLPFEPHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVS 651
K+GMVLPF P +++FD V Y VDMP+EMK QGV +DKL LL V+G FRPGVLTALMGVS
Sbjct: 802 KRGMVLPFTPLTMSFDNVNYYVDMPKEMKEQGVSKDKLQLLKEVTGVFRPGVLTALMGVS 861
Query: 652 GAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESLL 711
GAGKTTLMDVLAGRKTGGYI G+I ISG+PK+QETFARISGYCEQNDIHSP VT+ ESL+
Sbjct: 862 GAGKTTLMDVLAGRKTGGYIEGDIRISGFPKRQETFARISGYCEQNDIHSPQVTVKESLI 921
Query: 712 FSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELV 771
+SA+LRL EV + F+DEVMELVEL L+ ++VGLPG++GLSTEQRKRLTIAVELV
Sbjct: 922 YSAFLRLPKEVTKYEKMRFVDEVMELVELESLKDAVVGLPGITGLSTEQRKRLTIAVELV 981
Query: 772 ANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKR 831
ANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDEL L+KR
Sbjct: 982 ANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKR 1041
Query: 832 GGQEIYVGPLGRHSCHLISYFEAIPGVQKIKDGYNPATWMLEVSAASQELALGIDFTEHY 891
GGQ IY GPLG++S +I YF+AI GV KIK+ YNPATWMLEVS+ + E L IDF EHY
Sbjct: 1042 GGQVIYAGPLGQNSHKIIEYFQAIHGVPKIKEKYNPATWMLEVSSMAAEAKLEIDFAEHY 1101
Query: 892 KRSDLYRRNKALIEDLSRPPPGSKDLYFPTQFSQSSWIQFVACLWKQHWSYWRNPPYTAV 951
K S LY++NK L+++LS PP G+ DLYF T+FSQS QF +CLWKQ +YWR P Y
Sbjct: 1102 KTSSLYQQNKNLVKELSTPPQGASDLYFSTRFSQSLLGQFKSCLWKQWITYWRTPDYNLA 1161
Query: 952 RFFFTAFIALLFGSLFWDLGGRTKRNQDLFNAMGSMFTAVLFLGVQYCSSVQPIVSVERT 1011
RFFFT A++ GS+FW +G + + DL +G+M+ AVLF+GV SSVQP+++VER+
Sbjct: 1162 RFFFTLAAAVMLGSIFWKVGTKRENANDLTKVIGAMYAAVLFVGVNNSSSVQPLIAVERS 1221
Query: 1012 VFYREKAAGMYAGIPWALAQVMIEIPYILVQSVVYGAIVYAMIGFEWTAAKFFWYIXXXX 1071
VFYRE+AA MY+ +P+ALAQV+ EIPY+L+Q+ Y I+YAM+ FEWT AKFFW+
Sbjct: 1222 VFYRERAAEMYSALPYALAQVVCEIPYVLIQTTYYTLIIYAMMCFEWTLAKFFWFYFVSF 1281
Query: 1072 XXXXXXXXXXXMAVALTPNHHIAAIVSTLFYGLWNVFSGFXXXXXXXXXXXXXYYWANPI 1131
M VALTPN +AA+ + FYGL+N+FSGF YYW P+
Sbjct: 1282 MSFLYFTYYGMMTVALTPNQQVAAVFAGAFYGLFNLFSGFVIPRPRIPKWWIWYYWICPV 1341
Query: 1132 AWTLYGLVASQFGDMDDK-K---MDTGETVKQFLKDYFDFKHDXXXXXXXXXXXXXXXXX 1187
AWT+YGL+ SQ+GD++D K M T+K ++++++ + D
Sbjct: 1342 AWTVYGLIVSQYGDVEDTIKVPGMANDPTIKWYIENHYGYDADFMIPIATVLVGFTLFFA 1401
Query: 1188 XXXXXXIKMFNFQRR 1202
I+ NFQ+R
Sbjct: 1402 FMFAFGIRTLNFQQR 1416
|
|
| TAIR|locus:2045683 ABCG31 "ATP-binding cassette G31" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1796 (637.3 bits), Expect = 0., Sum P(2) = 0.
Identities = 356/615 (57%), Positives = 439/615 (71%)
Query: 591 KKKGMVLPFEPHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGV 650
+KKGM+LPF+P ++TF V Y VDMP+EM+ QGV E +L LL+ VSG F PGVLTAL+G
Sbjct: 813 EKKGMILPFKPLTMTFHNVNYYVDMPKEMRSQGVPETRLQLLSNVSGVFSPGVLTALVGS 872
Query: 651 SGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESL 710
SGAGKTTLMDVLAGRKTGGY G+I ISG+PK+Q+TFARISGY EQNDIHSP VT+ ESL
Sbjct: 873 SGAGKTTLMDVLAGRKTGGYTEGDIRISGHPKEQQTFARISGYVEQNDIHSPQVTVEESL 932
Query: 711 LFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVEL 770
FSA LRL E+ E +K F+++VM LVEL+ LR +LVGLPG +GLSTEQRKRLTIAVEL
Sbjct: 933 WFSASLRLPKEITKEQKKEFVEQVMRLVELDTLRYALVGLPGTTGLSTEQRKRLTIAVEL 992
Query: 771 VANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 830
VANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDEL LMK
Sbjct: 993 VANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMK 1052
Query: 831 RGGQEIYVGPLGRHSCHLISYFEAIPGVQKIKDGYNPATWMLEVSAASQELALGIDFTEH 890
RGGQ IY G LG HS L+ YF+ I GV I GYNPATWMLEV+ + E ++F +
Sbjct: 1053 RGGQVIYGGKLGTHSQVLVDYFQGINGVPPISSGYNPATWMLEVTTPALEEKYNMEFADL 1112
Query: 891 YKRSDLYRRNKALIEDLSRPPPGSKDLYFPTQFSQSSWIQFVACLWKQHWSYWRNPPYTA 950
YK+SD +R +A I+ LS PP GS+ + F +++SQ+ QF+ CLWKQ+ YWR+P Y
Sbjct: 1113 YKKSDQFREVEANIKQLSVPPEGSEPISFTSRYSQNQLSQFLLCLWKQNLVYWRSPEYNL 1172
Query: 951 VRFFFTAFIALLFGSLFWDLGGRTKRNQDLFNAMGSMFTAVLFLGVQYCSSVQPIVSVER 1010
VR FT A + G++FWD+G + +QDL MG++++A LFLGV SSVQPIVS+ER
Sbjct: 1173 VRLVFTTIAAFILGTVFWDIGSKRTSSQDLITVMGALYSACLFLGVSNASSVQPIVSIER 1232
Query: 1011 TVFYREKAAGMYAGIPWALAQVMIEIPYILVQSVVYGAIVYAMIGFEWTAAKFFWYIXXX 1070
TVFYREKAAGMYA IP+A AQ ++EIPYIL Q+++YG I Y IGFE T +KF Y+
Sbjct: 1233 TVFYREKAAGMYAPIPYAAAQGLVEIPYILTQTILYGVITYFTIGFERTFSKFVLYLVFM 1292
Query: 1071 XXXXXXXXXXXXMAVALTPNHHIAAIVSTLFYGLWNVFSGFXXXXXXXXXXXXXYYWANP 1130
MAV LTPN H+AA++S+ FY LWN+ SGF +Y+ P
Sbjct: 1293 FLTFTYFTFYGMMAVGLTPNQHLAAVISSAFYSLWNLLSGFLVQKPLIPVWWIWFYYICP 1352
Query: 1131 IAWTLYGLVASQFGDMD---DKKMDTGETVKQFLKDYFDFKHDXXXXXXXXXXXXXXXXX 1187
+AWTL G++ SQ GD++ ++ + G TVK+F++ YF +K +
Sbjct: 1353 VAWTLQGVILSQLGDVESMINEPLFHG-TVKEFIEYYFGYKPNMIGVSAAVLVGFCALFF 1411
Query: 1188 XXXXXXIKMFNFQRR 1202
+K NFQRR
Sbjct: 1412 SAFALSVKYLNFQRR 1426
|
|
| TAIR|locus:2084081 ABCG37 "ATP-binding cassette G37" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1693 (601.0 bits), Expect = 3.0e-311, Sum P(2) = 3.0e-311
Identities = 325/610 (53%), Positives = 420/610 (68%)
Query: 595 MVLPFEPHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAG 654
MVLPF+P ++TF ++ Y VDMP EM+ QG + KL LL+ ++GAFRPG+LTALMGVSGAG
Sbjct: 841 MVLPFKPLTVTFQDLNYFVDMPVEMRDQGYDQKKLQLLSDITGAFRPGILTALMGVSGAG 900
Query: 655 KTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESLLFSA 714
KTTL+DVLAGRKT GYI G+I ISG+PK QETFAR+SGYCEQ DIHSP +T+ ES+++SA
Sbjct: 901 KTTLLDVLAGRKTSGYIEGDIRISGFPKVQETFARVSGYCEQTDIHSPNITVEESVIYSA 960
Query: 715 WLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANP 774
WLRL+PE+D+ T+ F+ +V+E +EL+ ++ SLVG+ GVSGLSTEQRKRLTIAVELVANP
Sbjct: 961 WLRLAPEIDATTKTKFVKQVLETIELDEIKDSLVGVTGVSGLSTEQRKRLTIAVELVANP 1020
Query: 775 SIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQ 834
SIIFMDEPT+GLDARAAAIVMR V+N DTGRT+VCTIHQPSIDIFEAFDEL L+KRGG+
Sbjct: 1021 SIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFEAFDELVLLKRGGR 1080
Query: 835 EIYVGPLGRHSCHLISYFEAIPGVQKIKDGYNPATWMLEVSAASQELALGIDFTEHYKRS 894
IY GPLG+HS H+I YFE++P + KIKD +NPATWML+VS+ S E+ LG+DF + Y S
Sbjct: 1081 MIYTGPLGQHSRHIIEYFESVPEIPKIKDNHNPATWMLDVSSQSVEIELGVDFAKIYHDS 1140
Query: 895 DLYRRNKALIEDLSRPPPGSKDLYFPTQFSQSSWIQFVACLWKQHWSYWRNPPYTAVRFF 954
LY+RN L++ LS+P GS D+ F F+QS W QF + LWK + SYWR+P Y +R
Sbjct: 1141 ALYKRNSELVKQLSQPDSGSSDIQFKRTFAQSWWGQFKSILWKMNLSYWRSPSYNLMRMM 1200
Query: 955 FTAFIALLFGSLFWDLGGRTKRNQDLFNAMGSMFTAVLFLGVQYCSSVQPIVSVERTVFY 1014
T +L+FG+LFW G Q +F G+++ VLFLG+ C+S ER V Y
Sbjct: 1201 HTLVSSLIFGALFWKQGQNLDTQQSMFTVFGAIYGLVLFLGINNCASALQYFETERNVMY 1260
Query: 1015 REKAAGMYAGIPWALAQVMIEIPYILVQSVVYGAIVYAMIGFEWTAAKFFWYIXXXXXXX 1074
RE+ AGMY+ +AL QV+ EIPYI +Q+ + + Y MIGF +A K FW +
Sbjct: 1261 RERFAGMYSATAYALGQVVTEIPYIFIQAAEFVIVTYPMIGFYPSAYKVFWSLYSMFCSL 1320
Query: 1075 XXXXXXXXMAVALTPNHHIAAIVSTLFYGLWNVFSGFXXXXXXXXXXXXXYYWANPIAWT 1134
V++TPN +AAI+ +LFY +N+FSGF Y+ P +WT
Sbjct: 1321 LTFNYLAMFLVSITPNFMVAAILQSLFYVGFNLFSGFLIPQTQVPGWWIWLYYLTPTSWT 1380
Query: 1135 LYGLVASQFGDMDDKKMDTGE--TVKQFLKDYFDFKHDXXXXXXXXXXXXXXXXXXXXXX 1192
L G ++SQ+GD+ ++ G+ TV +FLKDYF F HD
Sbjct: 1381 LNGFISSQYGDIHEEINVFGQSTTVARFLKDYFGFHHDLLAVTAVVQIAFPIALASMFAF 1440
Query: 1193 XIKMFNFQRR 1202
+ NFQRR
Sbjct: 1441 FVGKLNFQRR 1450
|
|
| TAIR|locus:2049867 ABCG33 "ATP-binding cassette G33" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1648 (585.2 bits), Expect = 9.4e-306, Sum P(2) = 9.4e-306
Identities = 317/610 (51%), Positives = 415/610 (68%)
Query: 595 MVLPFEPHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAG 654
M+LPF+P ++TF ++ Y VD+P EMK QG E KL LL+ ++GAFRPGVLTALMG+SGAG
Sbjct: 804 MILPFKPLTITFQDLNYYVDVPVEMKGQGYNEKKLQLLSEITGAFRPGVLTALMGISGAG 863
Query: 655 KTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESLLFSA 714
KTTL+DVLAGRKT GYI G I ISG+ K QETFAR+SGYCEQ DIHSP +T+ ESL++SA
Sbjct: 864 KTTLLDVLAGRKTSGYIEGEIRISGFLKVQETFARVSGYCEQTDIHSPSITVEESLIYSA 923
Query: 715 WLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANP 774
WLRL PE++ +T+ F+ +V+E +EL ++ +LVG+ GVSGLSTEQRKRLT+AVELVANP
Sbjct: 924 WLRLVPEINPQTKIRFVKQVLETIELEEIKDALVGVAGVSGLSTEQRKRLTVAVELVANP 983
Query: 775 SIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQ 834
SIIFMDEPT+GLDARAAAIVMR V+N +TGRT+VCTIHQPSI IFEAFDEL L+KRGG+
Sbjct: 984 SIIFMDEPTTGLDARAAAIVMRAVKNVAETGRTIVCTIHQPSIHIFEAFDELVLLKRGGR 1043
Query: 835 EIYVGPLGRHSCHLISYFEAIPGVQKIKDGYNPATWMLEVSAASQELALGIDFTEHYKRS 894
IY GPLG+HS +I YF+ IPGV KI+D YNPATWMLEV++ S E L +DF + Y S
Sbjct: 1044 MIYSGPLGQHSSCVIEYFQNIPGVAKIRDKYNPATWMLEVTSESVETELDMDFAKIYNES 1103
Query: 895 DLYRRNKALIEDLSRPPPGSKDLYFPTQFSQSSWIQFVACLWKQHWSYWRNPPYTAVRFF 954
DLY+ N L+++LS+P GS DL+F F+Q+ W QF +CLWK SYWR+P Y +R
Sbjct: 1104 DLYKNNSELVKELSKPDHGSSDLHFKRTFAQNWWEQFKSCLWKMSLSYWRSPSYNLMRIG 1163
Query: 955 FTAFIALLFGSLFWDLGGRTKRNQDLFNAMGSMFTAVLFLGVQYCSSVQPIVSVERTVFY 1014
T + +FG LFW+ G + Q+LF +G+++ VLF+G+ C+S ER V Y
Sbjct: 1164 HTFISSFIFGLLFWNQGKKIDTQQNLFTVLGAIYGLVLFVGINNCTSALQYFETERNVMY 1223
Query: 1015 REKAAGMYAGIPWALAQVMIEIPYILVQSVVYGAIVYAMIGFEWTAAKFFWYIXXXXXXX 1074
RE+ AGMY+ +ALAQV+ EIPYI +QS + ++Y MIGF + +K FW +
Sbjct: 1224 RERFAGMYSAFAYALAQVVTEIPYIFIQSAEFVIVIYPMIGFYASFSKVFWSLYAMFCNL 1283
Query: 1075 XXXXXXXXMAVALTPNHHIAAIVSTLFYGLWNVFSGFXXXXXXXXXXXXXYYWANPIAWT 1134
+++TPN +AAI+ +LF+ +N+F+GF +Y+ P +WT
Sbjct: 1284 LCFNYLAMFLISITPNFMVAAILQSLFFTTFNIFAGFLIPKPQIPKWWVWFYYITPTSWT 1343
Query: 1135 LYGLVASQFGDMDDKKMDTGET--VKQFLKDYFDFKHDXXXXXXXXXXXXXXXXXXXXXX 1192
L +SQ+GD+ K GET V FL+DYF F HD
Sbjct: 1344 LNLFFSSQYGDIHQKINAFGETKTVASFLEDYFGFHHDRLMITAIILIAFPIALATMYAF 1403
Query: 1193 XIKMFNFQRR 1202
+ NFQ+R
Sbjct: 1404 FVAKLNFQKR 1413
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries 
Original result of BLAST against SWISS-PROT
ID ![]() | Name ![]() | Annotated EC number ![]() | Identity ![]() | Query coverage ![]() | Hit coverage ![]() | RBH(Q2H) ![]() | RBH(H2Q) ![]() |
| Q7PC84 | AB39G_ARATH | No assigned EC number | 0.5975 | 0.9692 | 0.8012 | yes | no |
| Q2PCF1 | PDR2_NICPL | No assigned EC number | 0.6011 | 0.9767 | 0.8035 | N/A | no |
| Q8GU92 | PDR2_ORYSJ | No assigned EC number | 0.7101 | 0.9816 | 0.8060 | no | no |
| Q0JLC5 | PDR3_ORYSJ | No assigned EC number | 0.7075 | 0.9808 | 0.8091 | yes | no |
| Q9M9E1 | AB40G_ARATH | No assigned EC number | 0.6984 | 0.9658 | 0.8158 | yes | no |
| O24367 | TUR2_SPIPO | No assigned EC number | 0.6909 | 0.9775 | 0.8154 | N/A | no |
| Q76CU2 | PDR1_TOBAC | No assigned EC number | 0.7227 | 0.9692 | 0.8124 | N/A | no |
| Q949G3 | PDR1_NICPL | No assigned EC number | 0.7121 | 0.9667 | 0.8091 | N/A | no |
| A2WSH0 | PDR3_ORYSI | No assigned EC number | 0.7066 | 0.9808 | 0.8091 | N/A | no |
| Q5W274 | PDR3_TOBAC | No assigned EC number | 0.5380 | 0.9700 | 0.8058 | N/A | no |
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
| Your Input: | |||||||||||
| GSVIVG00032575001 | SubName- Full=Chromosome chr4 scaffold_6, whole genome shotgun sequence; (1435 aa) | ||||||||||
(Vitis vinifera) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 1202 | |||
| PLN03140 | 1470 | PLN03140, PLN03140, ABC transporter G family membe | 0.0 | |
| TIGR00956 | 1394 | TIGR00956, 3a01205, Pleiotropic Drug Resistance (P | 0.0 | |
| cd03232 | 192 | cd03232, ABCG_PDR_domain2, Second domain of the pl | 1e-101 | |
| TIGR00955 | 617 | TIGR00955, 3a01204, The Eye Pigment Precursor Tran | 6e-98 | |
| cd03213 | 194 | cd03213, ABCG_EPDR, Eye pigment and drug resistanc | 5e-73 | |
| cd03234 | 226 | cd03234, ABCG_White, White pigment protein homolog | 3e-55 | |
| TIGR00956 | 1394 | TIGR00956, 3a01205, Pleiotropic Drug Resistance (P | 7e-55 | |
| pfam01061 | 210 | pfam01061, ABC2_membrane, ABC-2 type transporter | 3e-52 | |
| TIGR00955 | 617 | TIGR00955, 3a01204, The Eye Pigment Precursor Tran | 4e-48 | |
| PLN03211 | 659 | PLN03211, PLN03211, ABC transporter G-25; Provisio | 2e-46 | |
| COG1131 | 293 | COG1131, CcmA, ABC-type multidrug transport system | 1e-44 | |
| pfam01061 | 210 | pfam01061, ABC2_membrane, ABC-2 type transporter | 4e-43 | |
| cd03233 | 202 | cd03233, ABCG_PDR_domain1, First domain of the ple | 2e-39 | |
| PLN03140 | 1470 | PLN03140, PLN03140, ABC transporter G family membe | 2e-37 | |
| cd03233 | 202 | cd03233, ABCG_PDR_domain1, First domain of the ple | 1e-33 | |
| cd03263 | 220 | cd03263, ABC_subfamily_A, ATP-binding cassette dom | 3e-32 | |
| cd03225 | 211 | cd03225, ABC_cobalt_CbiO_domain1, First domain of | 6e-30 | |
| cd03264 | 211 | cd03264, ABC_drug_resistance_like, ABC-type multid | 3e-29 | |
| pfam08370 | 65 | pfam08370, PDR_assoc, Plant PDR ABC transporter as | 1e-26 | |
| cd03235 | 213 | cd03235, ABC_Metallic_Cations, ATP-binding cassett | 2e-24 | |
| COG1120 | 258 | COG1120, FepC, ABC-type cobalamin/Fe3+-siderophore | 6e-24 | |
| cd03255 | 218 | cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding casse | 5e-23 | |
| cd03214 | 180 | cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-bind | 9e-23 | |
| cd03230 | 173 | cd03230, ABC_DR_subfamily_A, ATP-binding cassette | 3e-22 | |
| cd03234 | 226 | cd03234, ABCG_White, White pigment protein homolog | 4e-22 | |
| cd03259 | 213 | cd03259, ABC_Carb_Solutes_like, ATP-binding casset | 1e-21 | |
| cd03229 | 178 | cd03229, ABC_Class3, ATP-binding cassette domain o | 1e-21 | |
| COG1121 | 254 | COG1121, ZnuC, ABC-type Mn/Zn transport systems, A | 2e-21 | |
| PLN03211 | 659 | PLN03211, PLN03211, ABC transporter G-25; Provisio | 6e-21 | |
| cd03226 | 205 | cd03226, ABC_cobalt_CbiO_domain2, Second domain of | 6e-21 | |
| COG1122 | 235 | COG1122, CbiO, ABC-type cobalt transport system, A | 7e-21 | |
| cd03213 | 194 | cd03213, ABCG_EPDR, Eye pigment and drug resistanc | 1e-20 | |
| COG1136 | 226 | COG1136, SalX, ABC-type antimicrobial peptide tran | 2e-20 | |
| TIGR00956 | 1394 | TIGR00956, 3a01205, Pleiotropic Drug Resistance (P | 3e-20 | |
| TIGR01166 | 190 | TIGR01166, cbiO, cobalt transport protein ATP-bind | 3e-20 | |
| COG4988 | 559 | COG4988, CydD, ABC-type transport system involved | 4e-20 | |
| cd00267 | 157 | cd00267, ABC_ATPase, ATP-binding cassette transpor | 2e-19 | |
| TIGR01188 | 302 | TIGR01188, drrA, daunorubicin resistance ABC trans | 2e-19 | |
| COG2274 | 709 | COG2274, SunT, ABC-type bacteriocin/lantibiotic ex | 6e-19 | |
| cd03265 | 220 | cd03265, ABC_DrrA, Daunorubicin/doxorubicin resist | 2e-18 | |
| TIGR02857 | 529 | TIGR02857, CydD, thiol reductant ABC exporter, Cyd | 4e-18 | |
| cd03219 | 236 | cd03219, ABC_Mj1267_LivG_branched, ATP-binding cas | 5e-18 | |
| cd03245 | 220 | cd03245, ABCC_bacteriocin_exporters, ATP-binding c | 5e-18 | |
| cd03292 | 214 | cd03292, ABC_FtsE_transporter, ATP-binding cassett | 6e-18 | |
| cd03266 | 218 | cd03266, ABC_NatA_sodium_exporter, ATP-binding cas | 7e-18 | |
| cd03261 | 235 | cd03261, ABC_Org_Solvent_Resistant, ATP-binding ca | 7e-18 | |
| TIGR02868 | 530 | TIGR02868, CydC, thiol reductant ABC exporter, Cyd | 1e-17 | |
| cd03228 | 171 | cd03228, ABCC_MRP_Like, ATP-binding cassette domai | 1e-17 | |
| TIGR03864 | 236 | TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-bindi | 2e-17 | |
| TIGR02315 | 243 | TIGR02315, ABC_phnC, phosphonate ABC transporter, | 2e-17 | |
| cd03256 | 241 | cd03256, ABC_PhnC_transporter, ATP-binding cassett | 2e-17 | |
| cd03293 | 220 | cd03293, ABC_NrtD_SsuB_transporters, ATP-binding c | 2e-17 | |
| cd03268 | 208 | cd03268, ABC_BcrA_bacitracin_resist, ATP-binding c | 4e-17 | |
| COG3638 | 258 | COG3638, COG3638, ABC-type phosphate/phosphonate t | 5e-17 | |
| COG3842 | 352 | COG3842, PotA, ABC-type spermidine/putrescine tran | 6e-17 | |
| TIGR03608 | 206 | TIGR03608, L_ocin_972_ABC, putative bacteriocin ex | 1e-16 | |
| cd03297 | 214 | cd03297, ABC_ModC_molybdenum_transporter, ATP-bind | 3e-16 | |
| PRK13539 | 207 | PRK13539, PRK13539, cytochrome c biogenesis protei | 3e-16 | |
| COG4555 | 245 | COG4555, NatA, ABC-type Na+ transport system, ATPa | 3e-16 | |
| COG3839 | 338 | COG3839, MalK, ABC-type sugar transport systems, A | 4e-16 | |
| COG1118 | 345 | COG1118, CysA, ABC-type sulfate/molybdate transpor | 5e-16 | |
| TIGR03873 | 256 | TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC tra | 8e-16 | |
| PRK13537 | 306 | PRK13537, PRK13537, nodulation ABC transporter Nod | 9e-16 | |
| COG0411 | 250 | COG0411, LivG, ABC-type branched-chain amino acid | 1e-15 | |
| PRK13536 | 340 | PRK13536, PRK13536, nodulation factor exporter sub | 1e-15 | |
| COG4559 | 259 | COG4559, COG4559, ABC-type hemin transport system, | 2e-15 | |
| COG4133 | 209 | COG4133, CcmA, ABC-type transport system involved | 3e-15 | |
| cd03260 | 227 | cd03260, ABC_PstB_phosphate_transporter, ATP-bindi | 4e-15 | |
| cd03269 | 210 | cd03269, ABC_putative_ATPase, ATP-binding cassette | 5e-15 | |
| cd03218 | 232 | cd03218, ABC_YhbG, ATP-binding cassette component | 5e-15 | |
| cd03257 | 228 | cd03257, ABC_NikE_OppD_transporters, ATP-binding c | 6e-15 | |
| cd03246 | 173 | cd03246, ABCC_Protease_Secretion, ATP-binding cass | 6e-15 | |
| cd03296 | 239 | cd03296, ABC_CysA_sulfate_importer, ATP-binding ca | 9e-15 | |
| COG1116 | 248 | COG1116, TauB, ABC-type nitrate/sulfonate/bicarbon | 1e-14 | |
| COG1131 | 293 | COG1131, CcmA, ABC-type multidrug transport system | 2e-14 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 2e-14 | |
| PRK13548 | 258 | PRK13548, hmuV, hemin importer ATP-binding subunit | 3e-14 | |
| cd03254 | 229 | cd03254, ABCC_Glucan_exporter_like, ATP-binding ca | 4e-14 | |
| COG4674 | 249 | COG4674, COG4674, Uncharacterized ABC-type transpo | 5e-14 | |
| COG4152 | 300 | COG4152, COG4152, ABC-type uncharacterized transpo | 5e-14 | |
| PRK10895 | 241 | PRK10895, PRK10895, lipopolysaccharide ABC transpo | 6e-14 | |
| COG0396 | 251 | COG0396, sufC, Cysteine desulfurase activator ATPa | 6e-14 | |
| COG1127 | 263 | COG1127, Ttg2A, ABC-type transport system involved | 8e-14 | |
| TIGR01288 | 303 | TIGR01288, nodI, ATP-binding ABC transporter famil | 9e-14 | |
| COG4604 | 252 | COG4604, CeuD, ABC-type enterochelin transport sys | 9e-14 | |
| COG1124 | 252 | COG1124, DppF, ABC-type dipeptide/oligopeptide/nic | 1e-13 | |
| COG1129 | 500 | COG1129, MglA, ABC-type sugar transport system, AT | 1e-13 | |
| TIGR01189 | 198 | TIGR01189, ccmA, heme ABC exporter, ATP-binding pr | 1e-13 | |
| cd03232 | 192 | cd03232, ABCG_PDR_domain2, Second domain of the pl | 2e-13 | |
| cd03224 | 222 | cd03224, ABC_TM1139_LivF_branched, ATP-binding cas | 2e-13 | |
| PRK13636 | 283 | PRK13636, cbiO, cobalt transporter ATP-binding sub | 3e-13 | |
| cd03252 | 237 | cd03252, ABCC_Hemolysin, ATP-binding cassette doma | 4e-13 | |
| TIGR00968 | 237 | TIGR00968, 3a0106s01, sulfate ABC transporter, ATP | 5e-13 | |
| TIGR03411 | 242 | TIGR03411, urea_trans_UrtD, urea ABC transporter, | 8e-13 | |
| COG1137 | 243 | COG1137, YhbG, ABC-type (unclassified) transport s | 1e-12 | |
| COG4525 | 259 | COG4525, TauB, ABC-type taurine transport system, | 1e-12 | |
| PRK11231 | 255 | PRK11231, fecE, iron-dicitrate transporter ATP-bin | 2e-12 | |
| TIGR03740 | 223 | TIGR03740, galliderm_ABC, gallidermin-class lantib | 2e-12 | |
| TIGR01257 | 2272 | TIGR01257, rim_protein, retinal-specific rim ABC t | 2e-12 | |
| PRK14239 | 252 | PRK14239, PRK14239, phosphate transporter ATP-bind | 3e-12 | |
| cd03267 | 236 | cd03267, ABC_NatA_like, ATP-binding cassette domai | 3e-12 | |
| TIGR01842 | 544 | TIGR01842, type_I_sec_PrtD, type I secretion syste | 3e-12 | |
| PRK13638 | 271 | PRK13638, cbiO, cobalt transporter ATP-binding sub | 4e-12 | |
| cd03299 | 235 | cd03299, ABC_ModC_like, ATP-binding cassette domai | 4e-12 | |
| COG1132 | 567 | COG1132, MdlB, ABC-type multidrug transport system | 4e-12 | |
| cd03249 | 238 | cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassett | 4e-12 | |
| PRK15056 | 272 | PRK15056, PRK15056, manganese/iron transporter ATP | 4e-12 | |
| cd03253 | 236 | cd03253, ABCC_ATM1_transporter, ATP-binding casset | 4e-12 | |
| PRK10584 | 228 | PRK10584, PRK10584, putative ABC transporter ATP-b | 5e-12 | |
| TIGR02982 | 220 | TIGR02982, heterocyst_DevA, ABC exporter ATP-bindi | 6e-12 | |
| COG4586 | 325 | COG4586, COG4586, ABC-type uncharacterized transpo | 7e-12 | |
| cd03300 | 232 | cd03300, ABC_PotA_N, ATP-binding cassette domain o | 7e-12 | |
| TIGR03258 | 362 | TIGR03258, PhnT, 2-aminoethylphosphonate ABC trans | 7e-12 | |
| COG1125 | 309 | COG1125, OpuBA, ABC-type proline/glycine betaine t | 8e-12 | |
| cd03295 | 242 | cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cas | 1e-11 | |
| pfam00005 | 119 | pfam00005, ABC_tran, ABC transporter | 1e-11 | |
| PRK09984 | 262 | PRK09984, PRK09984, phosphonate/organophosphate es | 1e-11 | |
| TIGR03522 | 301 | TIGR03522, GldA_ABC_ATP, gliding motility-associat | 2e-11 | |
| TIGR02673 | 214 | TIGR02673, FtsE, cell division ATP-binding protein | 2e-11 | |
| TIGR02211 | 221 | TIGR02211, LolD_lipo_ex, lipoprotein releasing sys | 2e-11 | |
| COG4618 | 580 | COG4618, ArpD, ABC-type protease/lipase transport | 2e-11 | |
| COG1135 | 339 | COG1135, AbcC, ABC-type metal ion transport system | 2e-11 | |
| COG1117 | 253 | COG1117, PstB, ABC-type phosphate transport system | 3e-11 | |
| COG2884 | 223 | COG2884, FtsE, Predicted ATPase involved in cell d | 4e-11 | |
| TIGR02142 | 354 | TIGR02142, modC_ABC, molybdenum ABC transporter, A | 4e-11 | |
| COG4181 | 228 | COG4181, COG4181, Predicted ABC-type transport sys | 4e-11 | |
| PRK11264 | 250 | PRK11264, PRK11264, putative amino-acid ABC transp | 5e-11 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 5e-11 | |
| TIGR03265 | 353 | TIGR03265, PhnT2, putative 2-aminoethylphosphonate | 6e-11 | |
| PRK13639 | 275 | PRK13639, cbiO, cobalt transporter ATP-binding sub | 6e-11 | |
| PRK13652 | 277 | PRK13652, cbiO, cobalt transporter ATP-binding sub | 7e-11 | |
| COG4136 | 213 | COG4136, COG4136, ABC-type uncharacterized transpo | 8e-11 | |
| COG0444 | 316 | COG0444, DppD, ABC-type dipeptide/oligopeptide/nic | 1e-10 | |
| cd03301 | 213 | cd03301, ABC_MalK_N, The N-terminal ATPase domain | 1e-10 | |
| COG4987 | 573 | COG4987, CydC, ABC-type transport system involved | 1e-10 | |
| COG3845 | 501 | COG3845, COG3845, ABC-type uncharacterized transpo | 1e-10 | |
| PRK11248 | 255 | PRK11248, tauB, taurine transporter ATP-binding su | 1e-10 | |
| COG4138 | 248 | COG4138, BtuD, ABC-type cobalamin transport system | 1e-10 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 2e-10 | |
| COG0410 | 237 | COG0410, LivF, ABC-type branched-chain amino acid | 2e-10 | |
| TIGR01187 | 325 | TIGR01187, potA, spermidine/putrescine ABC transpo | 2e-10 | |
| TIGR03796 | 710 | TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin syste | 2e-10 | |
| PRK13631 | 320 | PRK13631, cbiO, cobalt transporter ATP-binding sub | 2e-10 | |
| COG4107 | 258 | COG4107, PhnK, ABC-type phosphonate transport syst | 2e-10 | |
| TIGR03797 | 686 | TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin syste | 2e-10 | |
| TIGR03410 | 230 | TIGR03410, urea_trans_UrtE, urea ABC transporter, | 2e-10 | |
| PRK14272 | 252 | PRK14272, PRK14272, phosphate ABC transporter ATP- | 2e-10 | |
| PRK11288 | 501 | PRK11288, araG, L-arabinose transporter ATP-bindin | 3e-10 | |
| cd03250 | 204 | cd03250, ABCC_MRP_domain1, ATP-binding cassette do | 3e-10 | |
| COG1101 | 263 | COG1101, PhnK, ABC-type uncharacterized transport | 3e-10 | |
| cd03231 | 201 | cd03231, ABC_CcmA_heme_exporter, Cytochrome c biog | 3e-10 | |
| cd03251 | 234 | cd03251, ABCC_MsbA, ATP-binding cassette domain of | 4e-10 | |
| PRK09536 | 402 | PRK09536, btuD, corrinoid ABC transporter ATPase; | 4e-10 | |
| TIGR01846 | 694 | TIGR01846, type_I_sec_HlyB, type I secretion syste | 4e-10 | |
| PRK10575 | 265 | PRK10575, PRK10575, iron-hydroxamate transporter A | 6e-10 | |
| COG4148 | 352 | COG4148, ModC, ABC-type molybdate transport system | 6e-10 | |
| TIGR00972 | 247 | TIGR00972, 3a0107s01c2, phosphate ABC transporter, | 8e-10 | |
| cd03217 | 200 | cd03217, ABC_FeS_Assembly, ABC-type transport syst | 8e-10 | |
| TIGR02323 | 253 | TIGR02323, CP_lyasePhnK, phosphonate C-P lyase sys | 2e-09 | |
| cd03298 | 211 | cd03298, ABC_ThiQ_thiamine_transporter, ATP-bindin | 2e-09 | |
| COG1119 | 257 | COG1119, ModF, ABC-type molybdenum transport syste | 2e-09 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 3e-09 | |
| PRK14255 | 252 | PRK14255, PRK14255, phosphate ABC transporter ATP- | 3e-09 | |
| PRK13643 | 288 | PRK13643, cbiO, cobalt transporter ATP-binding sub | 3e-09 | |
| PRK11174 | 588 | PRK11174, PRK11174, cysteine/glutathione ABC trans | 4e-09 | |
| TIGR03375 | 694 | TIGR03375, type_I_sec_LssB, type I secretion syste | 5e-09 | |
| TIGR01978 | 243 | TIGR01978, sufC, FeS assembly ATPase SufC | 5e-09 | |
| PRK13547 | 272 | PRK13547, hmuV, hemin importer ATP-binding subunit | 8e-09 | |
| cd03258 | 233 | cd03258, ABC_MetN_methionine_transporter, ATP-bind | 8e-09 | |
| COG5265 | 497 | COG5265, ATM1, ABC-type transport system involved | 9e-09 | |
| cd03248 | 226 | cd03248, ABCC_TAP, ATP-binding cassette domain of | 1e-08 | |
| PRK13647 | 274 | PRK13647, cbiO, cobalt transporter ATP-binding sub | 1e-08 | |
| cd03244 | 221 | cd03244, ABCC_MRP_domain2, ATP-binding cassette do | 1e-08 | |
| cd03262 | 213 | cd03262, ABC_HisP_GlnQ, ATP-binding cassette domai | 2e-08 | |
| PRK14247 | 250 | PRK14247, PRK14247, phosphate ABC transporter ATP- | 2e-08 | |
| COG1126 | 240 | COG1126, GlnQ, ABC-type polar amino acid transport | 2e-08 | |
| TIGR01186 | 363 | TIGR01186, proV, glycine betaine/L-proline transpo | 2e-08 | |
| PRK14253 | 249 | PRK14253, PRK14253, phosphate ABC transporter ATP- | 2e-08 | |
| COG4619 | 223 | COG4619, COG4619, ABC-type uncharacterized transpo | 3e-08 | |
| PRK13646 | 286 | PRK13646, cbiO, cobalt transporter ATP-binding sub | 3e-08 | |
| PRK14241 | 258 | PRK14241, PRK14241, phosphate transporter ATP-bind | 3e-08 | |
| PRK13540 | 200 | PRK13540, PRK13540, cytochrome c biogenesis protei | 5e-08 | |
| PRK09700 | 510 | PRK09700, PRK09700, D-allose transporter ATP-bindi | 5e-08 | |
| PRK14261 | 253 | PRK14261, PRK14261, phosphate ABC transporter ATP- | 6e-08 | |
| TIGR02769 | 265 | TIGR02769, nickel_nikE, nickel import ATP-binding | 6e-08 | |
| PRK14235 | 267 | PRK14235, PRK14235, phosphate transporter ATP-bind | 6e-08 | |
| TIGR03771 | 223 | TIGR03771, anch_rpt_ABC, anchored repeat-type ABC | 7e-08 | |
| PRK14245 | 250 | PRK14245, PRK14245, phosphate ABC transporter ATP- | 7e-08 | |
| cd03263 | 220 | cd03263, ABC_subfamily_A, ATP-binding cassette dom | 8e-08 | |
| PRK10982 | 491 | PRK10982, PRK10982, galactose/methyl galaxtoside t | 8e-08 | |
| PRK11629 | 233 | PRK11629, lolD, lipoprotein transporter ATP-bindin | 8e-08 | |
| cd00267 | 157 | cd00267, ABC_ATPase, ATP-binding cassette transpor | 9e-08 | |
| cd03238 | 176 | cd03238, ABC_UvrA, ATP-binding cassette domain of | 9e-08 | |
| TIGR01184 | 230 | TIGR01184, ntrCD, nitrate transport ATP-binding su | 9e-08 | |
| cd00267 | 157 | cd00267, ABC_ATPase, ATP-binding cassette transpor | 1e-07 | |
| TIGR02204 | 576 | TIGR02204, MsbA_rel, ABC transporter, permease/ATP | 1e-07 | |
| PRK14240 | 250 | PRK14240, PRK14240, phosphate transporter ATP-bind | 1e-07 | |
| PRK13641 | 287 | PRK13641, cbiO, cobalt transporter ATP-binding sub | 2e-07 | |
| PRK14262 | 250 | PRK14262, PRK14262, phosphate ABC transporter ATP- | 2e-07 | |
| PRK10762 | 501 | PRK10762, PRK10762, D-ribose transporter ATP bindi | 2e-07 | |
| TIGR02770 | 230 | TIGR02770, nickel_nikD, nickel import ATP-binding | 2e-07 | |
| PRK13635 | 279 | PRK13635, cbiO, cobalt transporter ATP-binding sub | 2e-07 | |
| cd03297 | 214 | cd03297, ABC_ModC_molybdenum_transporter, ATP-bind | 3e-07 | |
| PRK10419 | 268 | PRK10419, nikE, nickel transporter ATP-binding pro | 3e-07 | |
| TIGR01257 | 2272 | TIGR01257, rim_protein, retinal-specific rim ABC t | 4e-07 | |
| PRK15134 | 529 | PRK15134, PRK15134, microcin C ABC transporter ATP | 4e-07 | |
| PRK14270 | 251 | PRK14270, PRK14270, phosphate ABC transporter ATP- | 4e-07 | |
| COG4175 | 386 | COG4175, ProV, ABC-type proline/glycine betaine tr | 4e-07 | |
| cd03288 | 257 | cd03288, ABCC_SUR2, ATP-binding cassette domain 2 | 4e-07 | |
| PRK13640 | 282 | PRK13640, cbiO, cobalt transporter ATP-binding sub | 4e-07 | |
| COG1120 | 258 | COG1120, FepC, ABC-type cobalamin/Fe3+-siderophore | 5e-07 | |
| cd03369 | 207 | cd03369, ABCC_NFT1, ATP-binding cassette domain 2 | 5e-07 | |
| cd03247 | 178 | cd03247, ABCC_cytochrome_bd, ATP-binding cassette | 6e-07 | |
| COG4167 | 267 | COG4167, SapF, ABC-type antimicrobial peptide tran | 6e-07 | |
| PRK10851 | 353 | PRK10851, PRK10851, sulfate/thiosulfate transporte | 6e-07 | |
| cd03216 | 163 | cd03216, ABC_Carb_Monos_I, First domain of the ATP | 6e-07 | |
| cd03225 | 211 | cd03225, ABC_cobalt_CbiO_domain1, First domain of | 7e-07 | |
| COG3840 | 231 | COG3840, ThiQ, ABC-type thiamine transport system, | 7e-07 | |
| TIGR01277 | 213 | TIGR01277, thiQ, thiamine ABC transporter, ATP-bin | 7e-07 | |
| PRK14271 | 276 | PRK14271, PRK14271, phosphate ABC transporter ATP- | 8e-07 | |
| PRK14273 | 254 | PRK14273, PRK14273, phosphate ABC transporter ATP- | 8e-07 | |
| cd03253 | 236 | cd03253, ABCC_ATM1_transporter, ATP-binding casset | 1e-06 | |
| PRK13549 | 506 | PRK13549, PRK13549, xylose transporter ATP-binding | 1e-06 | |
| PRK11160 | 574 | PRK11160, PRK11160, cysteine/glutathione ABC trans | 1e-06 | |
| PRK13657 | 588 | PRK13657, PRK13657, cyclic beta-1,2-glucan ABC tra | 1e-06 | |
| COG1245 | 591 | COG1245, COG1245, Predicted ATPase, RNase L inhibi | 1e-06 | |
| PRK09580 | 248 | PRK09580, sufC, cysteine desulfurase ATPase compon | 1e-06 | |
| COG0444 | 316 | COG0444, DppD, ABC-type dipeptide/oligopeptide/nic | 2e-06 | |
| TIGR03375 | 694 | TIGR03375, type_I_sec_LssB, type I secretion syste | 2e-06 | |
| cd03216 | 163 | cd03216, ABC_Carb_Monos_I, First domain of the ATP | 2e-06 | |
| PRK11701 | 258 | PRK11701, phnK, phosphonate C-P lyase system prote | 2e-06 | |
| COG4161 | 242 | COG4161, ArtP, ABC-type arginine transport system, | 2e-06 | |
| TIGR02203 | 571 | TIGR02203, MsbA_lipidA, lipid A export permease/AT | 2e-06 | |
| TIGR02633 | 500 | TIGR02633, xylG, D-xylose ABC transporter, ATP-bin | 2e-06 | |
| PRK13538 | 204 | PRK13538, PRK13538, cytochrome c biogenesis protei | 2e-06 | |
| PRK13644 | 274 | PRK13644, cbiO, cobalt transporter ATP-binding sub | 2e-06 | |
| COG0842 | 286 | COG0842, COG0842, ABC-type multidrug transport sys | 2e-06 | |
| PRK14251 | 251 | PRK14251, PRK14251, phosphate ABC transporter ATP- | 2e-06 | |
| cd03236 | 255 | cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-bin | 2e-06 | |
| PRK09452 | 375 | PRK09452, potA, putrescine/spermidine ABC transpor | 2e-06 | |
| PRK14267 | 253 | PRK14267, PRK14267, phosphate ABC transporter ATP- | 2e-06 | |
| PRK14236 | 272 | PRK14236, PRK14236, phosphate transporter ATP-bind | 2e-06 | |
| PRK14238 | 271 | PRK14238, PRK14238, phosphate transporter ATP-bind | 2e-06 | |
| COG4172 | 534 | COG4172, COG4172, ABC-type uncharacterized transpo | 2e-06 | |
| PRK11300 | 255 | PRK11300, livG, leucine/isoleucine/valine transpor | 2e-06 | |
| COG4555 | 245 | COG4555, NatA, ABC-type Na+ transport system, ATPa | 3e-06 | |
| TIGR02633 | 500 | TIGR02633, xylG, D-xylose ABC transporter, ATP-bin | 3e-06 | |
| PRK14256 | 252 | PRK14256, PRK14256, phosphate ABC transporter ATP- | 3e-06 | |
| PRK13632 | 271 | PRK13632, cbiO, cobalt transporter ATP-binding sub | 3e-06 | |
| PRK09493 | 240 | PRK09493, glnQ, glutamine ABC transporter ATP-bind | 3e-06 | |
| cd03294 | 269 | cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette | 4e-06 | |
| PRK11432 | 351 | PRK11432, fbpC, ferric transporter ATP-binding sub | 4e-06 | |
| COG4608 | 268 | COG4608, AppF, ABC-type oligopeptide transport sys | 4e-06 | |
| COG4598 | 256 | COG4598, HisP, ABC-type histidine transport system | 6e-06 | |
| PRK14275 | 286 | PRK14275, PRK14275, phosphate ABC transporter ATP- | 7e-06 | |
| PRK03695 | 248 | PRK03695, PRK03695, vitamin B12-transporter ATPase | 8e-06 | |
| PRK14259 | 269 | PRK14259, PRK14259, phosphate ABC transporter ATP- | 8e-06 | |
| TIGR02314 | 343 | TIGR02314, ABC_MetN, D-methionine ABC transporter, | 8e-06 | |
| cd03261 | 235 | cd03261, ABC_Org_Solvent_Resistant, ATP-binding ca | 1e-05 | |
| cd03217 | 200 | cd03217, ABC_FeS_Assembly, ABC-type transport syst | 1e-05 | |
| PRK10619 | 257 | PRK10619, PRK10619, histidine/lysine/arginine/orni | 1e-05 | |
| PRK11000 | 369 | PRK11000, PRK11000, maltose/maltodextrin transport | 1e-05 | |
| PRK14242 | 253 | PRK14242, PRK14242, phosphate transporter ATP-bind | 1e-05 | |
| TIGR03269 | 520 | TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc | 1e-05 | |
| PRK14237 | 267 | PRK14237, PRK14237, phosphate transporter ATP-bind | 1e-05 | |
| PRK09544 | 251 | PRK09544, znuC, high-affinity zinc transporter ATP | 1e-05 | |
| pfam12698 | 278 | pfam12698, ABC2_membrane_3, ABC-2 family transport | 1e-05 | |
| TIGR01193 | 708 | TIGR01193, bacteriocin_ABC, ABC-type bacteriocin t | 1e-05 | |
| COG1122 | 235 | COG1122, CbiO, ABC-type cobalt transport system, A | 2e-05 | |
| cd03256 | 241 | cd03256, ABC_PhnC_transporter, ATP-binding cassett | 2e-05 | |
| COG1129 | 500 | COG1129, MglA, ABC-type sugar transport system, AT | 2e-05 | |
| COG3845 | 501 | COG3845, COG3845, ABC-type uncharacterized transpo | 2e-05 | |
| TIGR03269 | 520 | TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc | 2e-05 | |
| PRK13543 | 214 | PRK13543, PRK13543, cytochrome c biogenesis protei | 2e-05 | |
| cd03290 | 218 | cd03290, ABCC_SUR1_N, ATP-binding cassette domain | 2e-05 | |
| PRK10253 | 265 | PRK10253, PRK10253, iron-enterobactin transporter | 2e-05 | |
| TIGR00958 | 711 | TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) | 2e-05 | |
| PRK13634 | 290 | PRK13634, cbiO, cobalt transporter ATP-binding sub | 2e-05 | |
| COG1118 | 345 | COG1118, CysA, ABC-type sulfate/molybdate transpor | 3e-05 | |
| cd03257 | 228 | cd03257, ABC_NikE_OppD_transporters, ATP-binding c | 3e-05 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 3e-05 | |
| PRK13651 | 305 | PRK13651, PRK13651, cobalt transporter ATP-binding | 3e-05 | |
| PLN03232 | 1495 | PLN03232, PLN03232, ABC transporter C family membe | 3e-05 | |
| PRK14246 | 257 | PRK14246, PRK14246, phosphate ABC transporter ATP- | 3e-05 | |
| smart00382 | 148 | smart00382, AAA, ATPases associated with a variety | 3e-05 | |
| COG4178 | 604 | COG4178, COG4178, ABC-type uncharacterized transpo | 4e-05 | |
| PRK14249 | 251 | PRK14249, PRK14249, phosphate ABC transporter ATP- | 4e-05 | |
| PRK10771 | 232 | PRK10771, thiQ, thiamine transporter ATP-binding s | 4e-05 | |
| CHL00131 | 252 | CHL00131, ycf16, sulfate ABC transporter protein; | 5e-05 | |
| PRK11607 | 377 | PRK11607, potG, putrescine transporter ATP-binding | 5e-05 | |
| TIGR02324 | 224 | TIGR02324, CP_lyasePhnL, phosphonate C-P lyase sys | 5e-05 | |
| TIGR03005 | 252 | TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine AB | 6e-05 | |
| PRK10908 | 222 | PRK10908, PRK10908, cell division protein FtsE; Pr | 6e-05 | |
| PRK10535 | 648 | PRK10535, PRK10535, macrolide transporter ATP-bind | 6e-05 | |
| PTZ00265 | 1466 | PTZ00265, PTZ00265, multidrug resistance protein ( | 6e-05 | |
| PRK11144 | 352 | PRK11144, modC, molybdate transporter ATP-binding | 6e-05 | |
| PRK11614 | 237 | PRK11614, livF, leucine/isoleucine/valine transpor | 6e-05 | |
| cd03227 | 162 | cd03227, ABC_Class2, ATP-binding cassette domain o | 7e-05 | |
| PRK14274 | 259 | PRK14274, PRK14274, phosphate ABC transporter ATP- | 8e-05 | |
| PRK14269 | 246 | PRK14269, PRK14269, phosphate ABC transporter ATP- | 8e-05 | |
| PRK10247 | 225 | PRK10247, PRK10247, putative ABC transporter ATP-b | 9e-05 | |
| PRK14266 | 250 | PRK14266, PRK14266, phosphate ABC transporter ATP- | 9e-05 | |
| cd03245 | 220 | cd03245, ABCC_bacteriocin_exporters, ATP-binding c | 1e-04 | |
| PTZ00265 | 1466 | PTZ00265, PTZ00265, multidrug resistance protein ( | 1e-04 | |
| PRK14243 | 264 | PRK14243, PRK14243, phosphate transporter ATP-bind | 1e-04 | |
| PRK13648 | 269 | PRK13648, cbiO, cobalt transporter ATP-binding sub | 1e-04 | |
| PRK11308 | 327 | PRK11308, dppF, dipeptide transporter ATP-binding | 1e-04 | |
| PRK13649 | 280 | PRK13649, cbiO, cobalt transporter ATP-binding sub | 1e-04 | |
| PRK14264 | 305 | PRK14264, PRK14264, phosphate ABC transporter ATP- | 1e-04 | |
| PRK13637 | 287 | PRK13637, cbiO, cobalt transporter ATP-binding sub | 1e-04 | |
| PRK15439 | 510 | PRK15439, PRK15439, autoinducer 2 ABC transporter | 1e-04 | |
| cd03229 | 178 | cd03229, ABC_Class3, ATP-binding cassette domain o | 2e-04 | |
| COG3638 | 258 | COG3638, COG3638, ABC-type phosphate/phosphonate t | 2e-04 | |
| PRK09700 | 510 | PRK09700, PRK09700, D-allose transporter ATP-bindi | 2e-04 | |
| cd03220 | 224 | cd03220, ABC_KpsT_Wzt, ATP-binding cassette compon | 2e-04 | |
| PRK15112 | 267 | PRK15112, PRK15112, antimicrobial peptide ABC syst | 2e-04 | |
| cd03249 | 238 | cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassett | 3e-04 | |
| TIGR02982 | 220 | TIGR02982, heterocyst_DevA, ABC exporter ATP-bindi | 3e-04 | |
| PRK13645 | 289 | PRK13645, cbiO, cobalt transporter ATP-binding sub | 3e-04 | |
| cd03223 | 166 | cd03223, ABCD_peroxisomal_ALDP, ATP-binding casset | 3e-04 | |
| PRK14254 | 285 | PRK14254, PRK14254, phosphate ABC transporter ATP- | 3e-04 | |
| PRK14250 | 241 | PRK14250, PRK14250, phosphate ABC transporter ATP- | 3e-04 | |
| COG2274 | 709 | COG2274, SunT, ABC-type bacteriocin/lantibiotic ex | 4e-04 | |
| TIGR01193 | 708 | TIGR01193, bacteriocin_ABC, ABC-type bacteriocin t | 4e-04 | |
| PRK13642 | 277 | PRK13642, cbiO, cobalt transporter ATP-binding sub | 4e-04 | |
| PRK14252 | 265 | PRK14252, PRK14252, phosphate ABC transporter ATP- | 4e-04 | |
| cd03214 | 180 | cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-bind | 5e-04 | |
| TIGR02203 | 571 | TIGR02203, MsbA_lipidA, lipid A export permease/AT | 5e-04 | |
| PRK11176 | 582 | PRK11176, PRK11176, lipid transporter ATP-binding/ | 5e-04 | |
| COG1119 | 257 | COG1119, ModF, ABC-type molybdenum transport syste | 6e-04 | |
| PRK13631 | 320 | PRK13631, cbiO, cobalt transporter ATP-binding sub | 7e-04 | |
| cd03237 | 246 | cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-bin | 7e-04 | |
| TIGR01192 | 585 | TIGR01192, chvA, glucan exporter ATP-binding prote | 7e-04 | |
| COG1127 | 263 | COG1127, Ttg2A, ABC-type transport system involved | 8e-04 | |
| COG1135 | 339 | COG1135, AbcC, ABC-type metal ion transport system | 8e-04 | |
| PRK13651 | 305 | PRK13651, PRK13651, cobalt transporter ATP-binding | 8e-04 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 9e-04 | |
| PRK13640 | 282 | PRK13640, cbiO, cobalt transporter ATP-binding sub | 9e-04 | |
| PRK14257 | 329 | PRK14257, PRK14257, phosphate ABC transporter ATP- | 9e-04 | |
| cd03235 | 213 | cd03235, ABC_Metallic_Cations, ATP-binding cassett | 0.001 | |
| COG1121 | 254 | COG1121, ZnuC, ABC-type Mn/Zn transport systems, A | 0.001 | |
| TIGR01188 | 302 | TIGR01188, drrA, daunorubicin resistance ABC trans | 0.001 | |
| cd03252 | 237 | cd03252, ABCC_Hemolysin, ATP-binding cassette doma | 0.001 | |
| PRK13643 | 288 | PRK13643, cbiO, cobalt transporter ATP-binding sub | 0.001 | |
| TIGR01978 | 243 | TIGR01978, sufC, FeS assembly ATPase SufC | 0.001 | |
| COG5265 | 497 | COG5265, ATM1, ABC-type transport system involved | 0.001 | |
| cd03238 | 176 | cd03238, ABC_UvrA, ATP-binding cassette domain of | 0.001 | |
| COG4172 | 534 | COG4172, COG4172, ABC-type uncharacterized transpo | 0.001 | |
| TIGR03269 | 520 | TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc | 0.001 | |
| PRK14250 | 241 | PRK14250, PRK14250, phosphate ABC transporter ATP- | 0.001 | |
| PRK11124 | 242 | PRK11124, artP, arginine transporter ATP-binding s | 0.001 | |
| PRK14258 | 261 | PRK14258, PRK14258, phosphate ABC transporter ATP- | 0.001 | |
| PRK14248 | 268 | PRK14248, PRK14248, phosphate ABC transporter ATP- | 0.001 | |
| cd03228 | 171 | cd03228, ABCC_MRP_Like, ATP-binding cassette domai | 0.002 | |
| TIGR03873 | 256 | TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC tra | 0.002 | |
| PRK13638 | 271 | PRK13638, cbiO, cobalt transporter ATP-binding sub | 0.002 | |
| PRK13639 | 275 | PRK13639, cbiO, cobalt transporter ATP-binding sub | 0.002 | |
| COG4107 | 258 | COG4107, PhnK, ABC-type phosphonate transport syst | 0.002 | |
| cd03251 | 234 | cd03251, ABCC_MsbA, ATP-binding cassette domain of | 0.002 | |
| PRK13650 | 279 | PRK13650, cbiO, cobalt transporter ATP-binding sub | 0.002 | |
| PRK14244 | 251 | PRK14244, PRK14244, phosphate ABC transporter ATP- | 0.002 | |
| PRK14268 | 258 | PRK14268, PRK14268, phosphate ABC transporter ATP- | 0.002 | |
| TIGR03415 | 382 | TIGR03415, ABC_choXWV_ATP, choline ABC transporter | 0.002 | |
| PRK10744 | 260 | PRK10744, pstB, phosphate transporter ATP-binding | 0.002 | |
| PTZ00243 | 1560 | PTZ00243, PTZ00243, ABC transporter; Provisional | 0.002 | |
| PRK11650 | 356 | PRK11650, ugpC, glycerol-3-phosphate transporter A | 0.002 | |
| TIGR02315 | 243 | TIGR02315, ABC_phnC, phosphonate ABC transporter, | 0.003 | |
| COG0396 | 251 | COG0396, sufC, Cysteine desulfurase activator ATPa | 0.003 | |
| TIGR02142 | 354 | TIGR02142, modC_ABC, molybdenum ABC transporter, A | 0.003 | |
| cd03250 | 204 | cd03250, ABCC_MRP_domain1, ATP-binding cassette do | 0.003 | |
| TIGR02323 | 253 | TIGR02323, CP_lyasePhnK, phosphonate C-P lyase sys | 0.003 | |
| cd03258 | 233 | cd03258, ABC_MetN_methionine_transporter, ATP-bind | 0.003 | |
| pfam13304 | 256 | pfam13304, AAA_21, AAA domain | 0.003 | |
| TIGR00957 | 1522 | TIGR00957, MRP_assoc_pro, multi drug resistance-as | 0.003 | |
| cd03255 | 218 | cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding casse | 0.004 | |
| TIGR01846 | 694 | TIGR01846, type_I_sec_HlyB, type I secretion syste | 0.004 | |
| TIGR03005 | 252 | TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine AB | 0.004 | |
| PRK10790 | 592 | PRK10790, PRK10790, putative multidrug transporter | 0.004 |
| >gnl|CDD|215599 PLN03140, PLN03140, ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Score = 1772 bits (4590), Expect = 0.0
Identities = 731/1199 (60%), Positives = 916/1199 (76%), Gaps = 7/1199 (0%)
Query: 9 EMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEM 68
++L+ELARREK AGI P+ ++D++MKA A EG ++++ITDY LK+LGLD+C DT+VGDEM
Sbjct: 274 DLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEM 333
Query: 69 IRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVIS 128
IRGISGGQKKRVTTGEM+VGP LFMDEISTGLDSSTT+QIV CL+Q +H+ T ++S
Sbjct: 334 IRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHLTEATVLMS 393
Query: 129 LLQPAPETYDLFDDIILLSDGQIVYQGPRELVLEFFASMGFRCPKRKGVADFLQEVTSRK 188
LLQPAPET+DLFDDIILLS+GQIVYQGPR+ +LEFF S GF+CP+RKG ADFLQEVTS+K
Sbjct: 394 LLQPAPETFDLFDDIILLSEGQIVYQGPRDHILEFFESCGFKCPERKGTADFLQEVTSKK 453
Query: 189 DQRQYWAHKEKPYRFVTVQEFAEAFQSFHVGQKISDELRTPFDKSKSHRAALTTETYGVG 248
DQ QYWA + KPYR+++V EFAE F+SFHVG ++ +EL PFDKS+SH+AAL Y V
Sbjct: 454 DQEQYWADRNKPYRYISVSEFAERFKSFHVGMQLENELSVPFDKSQSHKAALVFSKYSVP 513
Query: 249 KRELLKANISRELLLMKRNSFVYIFKLIQIAFVAVVYMTLFLRTKMHKDTVTDGGIFAGA 308
K ELLKA +E LLMKRN+FVY+FK +QI VA + T+FLRT+MH DG ++ GA
Sbjct: 514 KMELLKACWDKEWLLMKRNAFVYVFKTVQIIIVAAIASTVFLRTEMHTRNEEDGALYIGA 573
Query: 309 TFFAITMVNFNGFSEISMTIAKLPVFYKQRDFRFFPPWAYAIPSWILKIPVSFLEVAVWV 368
F++ + FNGF+E+++ I +LPVFYKQRD F PPW + +P+++L IP+S +E VWV
Sbjct: 574 LLFSMIINMFNGFAELALMIQRLPVFYKQRDLLFHPPWTFTLPTFLLGIPISIIESVVWV 633
Query: 369 FLSYYVVGYDSNAGRFFKQYALLLGVNQMASALFRFIAVTGRNMVVANTFGSFALLVLLS 428
++YY +G+ A RFFKQ L+ + QMA+ +FR IA R M++ANT G+ LL++
Sbjct: 634 VITYYSIGFAPEASRFFKQLLLVFLIQQMAAGIFRLIASVCRTMIIANTGGALVLLLVFL 693
Query: 429 LGGFILSREDIKKWWKWAYWCSPLTYAQNAIVANEFLGHSW-KKFTQDSSETLGVQVLKS 487
LGGFIL + +I WW+WAYW SPL+Y NA+ NE W K D+S LG VL
Sbjct: 694 LGGFILPKGEIPNWWEWAYWVSPLSYGFNALAVNEMFAPRWMNKMASDNSTRLGTAVLNI 753
Query: 488 RGFFAHEYWYWLGLGALFGFVLLLNFAYTLALTFLDPFEKPRAVITEEIESNEQDDRIGG 547
F + WYW+G+GAL GF +L N +TLALT+L+P K +A+I+EE + +
Sbjct: 754 FDVFTDKNWYWIGVGALLGFTILFNVLFTLALTYLNPLGKKQAIISEETAEEMEGEEDSI 813
Query: 548 NVQLSTLGGSSNHNTRSGSTDDIRGQQSSSQSLSLAEAEASRPKKKGMVLPFEPHSLTFD 607
LS+ G++ + G + S EA K+GMVLPF P +++FD
Sbjct: 814 PRSLSSADGNNTREVAIQRMSNPEGLSKNRDSS--LEAANGVAPKRGMVLPFTPLAMSFD 871
Query: 608 EVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKT 667
+V Y VDMP EMK QGV ED+L LL V+GAFRPGVLTALMGVSGAGKTTLMDVLAGRKT
Sbjct: 872 DVNYFVDMPAEMKEQGVTEDRLQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKT 931
Query: 668 GGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETR 727
GGYI G+I ISG+PKKQETFARISGYCEQNDIHSP VT+ ESL++SA+LRL EV E +
Sbjct: 932 GGYIEGDIRISGFPKKQETFARISGYCEQNDIHSPQVTVRESLIYSAFLRLPKEVSKEEK 991
Query: 728 KMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 787
MF+DEVMELVEL+ L+ ++VGLPGV+GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD
Sbjct: 992 MMFVDEVMELVELDNLKDAIVGLPGVTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1051
Query: 788 ARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLGRHSCH 847
ARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDEL LMKRGGQ IY GPLGR+S
Sbjct: 1052 ARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYSGPLGRNSHK 1111
Query: 848 LISYFEAIPGVQKIKDGYNPATWMLEVSAASQELALGIDFTEHYKRSDLYRRNKALIEDL 907
+I YFEAIPGV KIK+ YNPATWMLEVS+ + E+ LGIDF EHYK S LY+RNKAL+++L
Sbjct: 1112 IIEYFEAIPGVPKIKEKYNPATWMLEVSSLAAEVKLGIDFAEHYKSSSLYQRNKALVKEL 1171
Query: 908 SRPPPGSKDLYFPTQFSQSSWIQFVACLWKQHWSYWRNPPYTAVRFFFTAFIALLFGSLF 967
S PPPG+ DLYF TQ+SQS+W QF +CLWKQ W+YWR+P Y VRFFFT AL+ G++F
Sbjct: 1172 STPPPGASDLYFATQYSQSTWGQFKSCLWKQWWTYWRSPDYNLVRFFFTLAAALMVGTIF 1231
Query: 968 WDLGGRTKRNQDLFNAMGSMFTAVLFLGVQYCSSVQPIVSVERTVFYREKAAGMYAGIPW 1027
W +G + DL +G+M+ AVLF+G+ CS+VQP+V+VERTVFYRE+AAGMY+ +P+
Sbjct: 1232 WKVGTKRSNANDLTMVIGAMYAAVLFVGINNCSTVQPMVAVERTVFYRERAAGMYSALPY 1291
Query: 1028 ALAQVMIEIPYILVQSVVYGAIVYAMIGFEWTAAKFFWYIFFMYFTLLFFTFYGMMAVAL 1087
A+AQV+ EIPY+L+Q+ Y IVYAM+ FEWTAAKFFW+ F +F+ L+FT+YGMM V+L
Sbjct: 1292 AIAQVVCEIPYVLIQTTYYTLIVYAMVAFEWTAAKFFWFYFISFFSFLYFTYYGMMTVSL 1351
Query: 1088 TPNHHIAAIVSTLFYGLWNVFSGFIIPRPRIPIWWRWYYWANPIAWTLYGLVASQFGDMD 1147
TPN +AAI + FYGL+N+FSGF IPRP+IP WW WYYW P+AWT+YGL+ SQ+GD++
Sbjct: 1352 TPNQQVAAIFAAAFYGLFNLFSGFFIPRPKIPKWWVWYYWICPVAWTVYGLIVSQYGDVE 1411
Query: 1148 DK----KMDTGETVKQFLKDYFDFKHDFLGVVAAVLVVFAVLFGFLFALGIKMFNFQRR 1202
D T+K +++D++ + DF+G VAAVLV F V F F+FA I+ NFQ R
Sbjct: 1412 DTIKVPGGAPDPTIKWYIQDHYGYDPDFMGPVAAVLVGFTVFFAFIFAFCIRTLNFQTR 1470
|
Length = 1470 |
| >gnl|CDD|233208 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Score = 1037 bits (2683), Expect = 0.0
Identities = 363/1255 (28%), Positives = 576/1255 (45%), Gaps = 141/1255 (11%)
Query: 43 ANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGL 102
A I D Y+ GL +T VG++ +RG+SGG++KRV+ E +G A D + GL
Sbjct: 181 AKHIADVYMATYGLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLGGAKIQCWDNATRGL 240
Query: 103 DSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLE 162
DS+T + + L+ + +I T ++++ Q + + Y+LFD +I+L +G +Y GP + +
Sbjct: 241 DSATALEFIRALKTSANILDTTPLVAIYQCSQDAYELFDKVIVLYEGYQIYFGPADKAKQ 300
Query: 163 FFASMGFRCPKRKGVADFLQEVTSRKDQRQYWAHKEKP-YRFVTVQEFAEAFQSFHVGQK 221
+F MGF+CP R+ ADFL +TS +RQ EK R T QEF +++ +
Sbjct: 301 YFEKMGFKCPDRQTTADFLTSLTSPA-ERQIKPGYEKKVPR--TPQEFETYWRNSPEYAQ 357
Query: 222 ISDELRTPFDK---------------SKSHRAALTTETYGVGKRELLKANISRELLLMKR 266
+ E+ D+ +K + + Y V +K ++R L MK
Sbjct: 358 LMKEIDEYLDRCSESDTKEAYRESHVAKQSKRTRPSSPYTVSFSMQVKYCLARNFLRMKG 417
Query: 267 NSFVYIFKLIQIAFVAVVYMTLFLRTKMHKDTVTDGGIFAGATFFAITMVNFNGFSEISM 326
N +F + +A++ ++F + G GA FFAI F+ EI+
Sbjct: 418 NPSFTLFMVFGNIIMALILSSVFYNLPKNTSDFYSRG---GALFFAILFNAFSSLLEIAS 474
Query: 327 TIAKLPVFYKQRDFRFFPPWAYAIPSWILKIPVSFLEVAVWVFLSYYVVGYDSNAGRFFK 386
P+ K R + + P A AI S I +IP +E V+ + Y++V + AGRFF
Sbjct: 475 MYEARPIVEKHRKYALYHPSADAIASIISEIPFKIIESVVFNIILYFMVNFRRTAGRFFF 534
Query: 387 QYALLLGVNQMASALFRFIAVTGRNMVVANTFGSFALLVLLSLGGFILSREDIKKWWKWA 446
+L S LFR I + + A T + LL L GF + R + W KW
Sbjct: 535 YLLILFICTLAMSHLFRSIGAVTKTLSEAMTPAAILLLALSIYTGFAIPRPSMLGWSKWI 594
Query: 447 YWCSPLTYAQNAIVANEFLGHSWKKFTQ----DSSETLGVQ---------------VLKS 487
Y+ +PL YA +++ NEF G ++ + LGV V
Sbjct: 595 YYVNPLAYAFESLMVNEFHGRRFECSQYVPSGGGYDNLGVTNKVCTVVGAEPGQDYVDGD 654
Query: 488 ---RGFFAHEY-WYWLGLGALFGFVLLLNFAYTLALTFLDPFEKPRAVITEEIESNEQDD 543
+ F + W G + GF + F Y L F ++ ++ + +
Sbjct: 655 DYLKLSFQYYNSHKWRNFGIIIGFTVFFFFVYILLTEFNKGAKQKGEILVFR-RGSLKRA 713
Query: 544 RIGGNVQLSTLGGSSNHNTRSGSTDDIRGQQSSSQSLSLAEAEASRPKKKGMVLPFEPHS 603
+ G T + + +DI + G VL +
Sbjct: 714 KKAG-------------ETSASNKNDI---------------------EAGEVLGSTDLT 739
Query: 604 LTFDEVVYSVDMPEEMKV-----------QGVLEDKLVLLNGVSGAFRPGVLTALMGVSG 652
D+V DM +E + ++K V+LN V G +PG LTALMG SG
Sbjct: 740 DESDDVNDEKDMEKESGEDIFHWRNLTYEVKIKKEKRVILNNVDGWVKPGTLTALMGASG 799
Query: 653 AGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESLLF 712
AGKTTL++VLA R T G ITG + +F R GY +Q D+H P T+ ESL F
Sbjct: 800 AGKTTLLNVLAERVTTGVITGGDRLVNGRPLDSSFQRSIGYVQQQDLHLPTSTVRESLRF 859
Query: 713 SAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVA 772
SA+LR V + +++EV++L+E+ ++VG+PG GL+ EQRKRLTI VELVA
Sbjct: 860 SAYLRQPKSVSKSEKMEYVEEVIKLLEMESYADAVVGVPG-EGLNVEQRKRLTIGVELVA 918
Query: 773 NP-SIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKR 831
P ++F+DEPTSGLD++ A + + +R D G+ ++CTIHQPS +FE FD L L+++
Sbjct: 919 KPKLLLFLDEPTSGLDSQTAWSICKLMRKLADHGQAILCTIHQPSAILFEEFDRLLLLQK 978
Query: 832 GGQEIYVGPLGRHSCHLISYFEAIPGVQKIKDGYNPATWMLEVSAASQELALGIDFTEHY 891
GGQ +Y G LG +S +I+YFE G K + NPA WMLEV A+ D+ E +
Sbjct: 979 GGQTVYFGDLGENSHTIINYFE-KHGAPKCPEDANPAEWMLEVIGAAPGAHANQDYHEVW 1037
Query: 892 KRSDLYRRNKALIEDLSRPPPGSKDLYFPT---QFSQSSWIQFVACLWKQHWSYWRNPPY 948
+ S Y+ K ++ L ++D P +++ S W QF LW+ YWR P Y
Sbjct: 1038 RNSSEYQAVKNELDRLEAELSKAEDDNDPDALSKYAASLWYQFKLVLWRTFQQYWRTPDY 1097
Query: 949 TAVRFFFTAFIALLFGSLFWDLGGRTKRNQDLFNAMGSMFTAVLFLGVQYCSSVQPIVSV 1008
+FF T F AL G F+ +G Q L N M ++F A + + P V+
Sbjct: 1098 LYSKFFLTIFAALFIGFTFFKVG---TSLQGLQNQMFAVFMATVLFNPLIQQYLPPFVAQ 1154
Query: 1009 ERTVFYREKAAGMYAGIPWALAQVMIEIPYILVQSVVYGAIVYAMIGFEWTAAK------ 1062
RE+ + ++ + + AQ+ +EIPY LV ++ I Y +GF W A+K
Sbjct: 1155 RDLYEVRERPSRTFSWLAFIAAQITVEIPYNLVAGTIFFFIWYYPVGFYWNASKTGQVHE 1214
Query: 1063 -FFWYIFFMYFTLLFFTFYGMMAVALTPNHHIAAIVSTLFYGLWNVFSGFIIPRPRIPIW 1121
+ L+F+ G M ++ PN AA++++L + + F G + P R+P +
Sbjct: 1215 RGVLFWLLSTMFFLYFSTLGQMVISFNPNADNAAVLASLLFTMCLSFCGVLAPPSRMPGF 1274
Query: 1122 WRWYYWANPIAWTLYGLVASQFGDMDDK---------KMDTGETVKQFLKDY-------- 1164
W + Y +P + + L+++ D+ +G+T +++K Y
Sbjct: 1275 WIFMYRCSPFTYLVQALLSTGLADVPVTCKVKELLTFNPPSGQTCGEYMKPYLENAGGYL 1334
Query: 1165 -------------FDFKHDFLGVVAAVLV----VFAVLFGFLFALGIKMFNFQRR 1202
+ + +DFL +++ F + F+F I F
Sbjct: 1335 LNPNATDSCSFCQYSYTNDFLEPISSKYSGRWRNFGIFIAFIFFNIIATVFFYWL 1389
|
[Transport and binding proteins, Other]. Length = 1394 |
| >gnl|CDD|213199 cd03232, ABCG_PDR_domain2, Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 318 bits (818), Expect = e-101
Identities = 112/239 (46%), Positives = 141/239 (58%), Gaps = 47/239 (19%)
Query: 601 PHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMD 660
LT+ + Y+V + K LLN +SG +PG LTALMG SGAGKTTL+D
Sbjct: 1 GSVLTWKNLNYTVPVKG---------GKRQLLNNISGYVKPGTLTALMGESGAGKTTLLD 51
Query: 661 VLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSP 720
VLAGRKT G ITG I I+G P + F R +GY EQ D+HSP +T+ E+L FSA LR
Sbjct: 52 VLAGRKTAGVITGEILINGRPLD-KNFQRSTGYVEQQDVHSPNLTVREALRFSALLR--- 107
Query: 721 EVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMD 780
GLS EQRKRLTI VEL A PSI+F+D
Sbjct: 108 ----------------------------------GLSVEQRKRLTIGVELAAKPSILFLD 133
Query: 781 EPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVG 839
EPTSGLD++AA ++R ++ D+G+ ++CTIHQPS IFE FD L L+KRGG+ +Y G
Sbjct: 134 EPTSGLDSQAAYNIVRFLKKLADSGQAILCTIHQPSASIFEKFDRLLLLKRGGKTVYFG 192
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 192 |
| >gnl|CDD|233207 TIGR00955, 3a01204, The Eye Pigment Precursor Transporter (EPP) Family protein | Back alignment and domain information |
|---|
Score = 325 bits (834), Expect = 6e-98
Identities = 173/593 (29%), Positives = 286/593 (48%), Gaps = 48/593 (8%)
Query: 631 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGY-ITGNITISGYPKKQETFAR 689
LL VSG +PG L A+MG SGAGKTTLM+ LA R G +G++ ++G P +
Sbjct: 40 LLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRA 99
Query: 690 ISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVG 749
IS Y +Q+D+ P +T+ E L+F A LR+ V + ++ +DEV++ + L + +G
Sbjct: 100 ISAYVQQDDLFIPTLTVREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIG 159
Query: 750 LPG-VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTV 808
+PG V GLS +RKRL A EL+ +P ++F DEPTSGLD+ A V++ ++ G+T+
Sbjct: 160 VPGRVKGLSGGERKRLAFASELLTDPPLLFCDEPTSGLDSFMAYSVVQVLKGLAQKGKTI 219
Query: 809 VCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLGRHSCHLISYFEAIPGVQKIKDGYNPA 868
+CTIHQPS ++FE FD++ LM G+ Y+G + +F + G + YNPA
Sbjct: 220 ICTIHQPSSELFELFDKIILMA-EGRVAYLGSPD----QAVPFFSDL-GHP-CPENYNPA 272
Query: 869 TWMLEVSA-------ASQELALGIDFTEHYKRSDLYRRNKALIEDLSRPPPGSKDLYFPT 921
+ ++V A S+E I + + SD+ R S + L +
Sbjct: 273 DFYVQVLAVIPGSENESRERIEKI--CDSFAVSDIGRDMLVNTNLWSGK---AGGLVKDS 327
Query: 922 QFSQSS------WIQFVACLWKQHWSYWRNPPYTAVRFFFTAFIALLFGSLFW--DLGGR 973
+ + W QF A L + S R+P VR T A+L G ++ L +
Sbjct: 328 ENMEGIGYNASWWTQFYALLKRSWLSVLRDPLLLKVRLIQTMMTAILIGLIYLGQGLTQK 387
Query: 974 TKRNQDLFNAMGSMFTAVLFLGVQYCSSVQPIVSVERTVFYREKAAGMYAGIPWALAQVM 1033
+N + G++F + + Q V + + E VF RE +G+Y + LA+ +
Sbjct: 388 GVQNIN-----GALFLFLTNMTFQNVFPVINVFTAELPVFLRETRSGLYRVSAYFLAKTI 442
Query: 1034 IEIPYILVQSVVYGAIVYAMIGFEWTAAKFFWYIFFMYFTLLFFTFYGMMAVALTPNHHI 1093
E+P ++ ++ +I Y MIG A F ++F + T +G + + +
Sbjct: 443 AELPLFIILPALFTSITYWMIGLRSGATHFLTFLFLVTLVANVATSFGYLISCAFSSTSM 502
Query: 1094 AAIVSTLFYGLWNVFSGFIIPRPRIPIWWRWYYWANPIAWTLY---GLVASQFGDMDDKK 1150
A V F + +F GF I IP++++W + ++W Y GL+ +Q+ D+D+ +
Sbjct: 503 ALTVGPPFVIPFLLFGGFFINSDSIPVYFKWLSY---LSWFRYGNEGLLINQWSDVDNIE 559
Query: 1151 MDTGETVKQFLKDY------FDFKHDFLGVVAAVLVVFAVLF--GFLFALGIK 1195
+ T F++ L + LV+ F FAL I+
Sbjct: 560 CTSANTTGPCPSSGEVILETLSFRNADLYLDLIGLVILIFFFRLLAYFALRIR 612
|
[Transport and binding proteins, Other]. Length = 617 |
| >gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily | Back alignment and domain information |
|---|
Score = 240 bits (615), Expect = 5e-73
Identities = 96/237 (40%), Positives = 139/237 (58%), Gaps = 45/237 (18%)
Query: 603 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVL 662
+L+F + +V + LL VSG +PG LTA+MG SGAGK+TL++ L
Sbjct: 3 TLSFRNLTVTVK-------SSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNAL 55
Query: 663 AGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEV 722
AGR+TG ++G + I+G P + +F +I GY Q+DI P +T+ E+L+F+A LR
Sbjct: 56 AGRRTGLGVSGEVLINGRPLDKRSFRKIIGYVPQDDILHPTLTVRETLMFAAKLR----- 110
Query: 723 DSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEP 782
GLS +RKR++IA+ELV+NPS++F+DEP
Sbjct: 111 --------------------------------GLSGGERKRVSIALELVSNPSLLFLDEP 138
Query: 783 TSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVG 839
TSGLD+ +A VM +R DTGRT++C+IHQPS +IFE FD+L L+ + G+ IY G
Sbjct: 139 TSGLDSSSALQVMSLLRRLADTGRTIICSIHQPSSEIFELFDKLLLLSQ-GRVIYFG 194
|
ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. Length = 194 |
| >gnl|CDD|213201 cd03234, ABCG_White, White pigment protein homolog of ABCG transporter subfamily | Back alignment and domain information |
|---|
Score = 191 bits (488), Expect = 3e-55
Identities = 80/210 (38%), Positives = 123/210 (58%), Gaps = 6/210 (2%)
Query: 631 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIT-GNITISGYPKKQETFAR 689
+LN VS G + A++G SG+GKTTL+D ++GR GG T G I +G P+K + F +
Sbjct: 22 ILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPDQFQK 81
Query: 690 ISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVG 749
Y Q+DI P +T+ E+L ++A LRL P S+ + E + L +L R +G
Sbjct: 82 CVAYVRQDDILLPGLTVRETLTYTAILRL-PRKSSDAIRKKRVEDVLLRDLALTR---IG 137
Query: 750 LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVV 809
V G+S +R+R++IAV+L+ +P ++ +DEPTSGLD+ A ++ T+ R V+
Sbjct: 138 GNLVKGISGGERRRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLARRNRIVI 197
Query: 810 CTIHQPSIDIFEAFDELFLMKRGGQEIYVG 839
TIHQP D+F FD + L+ G +Y G
Sbjct: 198 LTIHQPRSDLFRLFDRILLLSSGEI-VYSG 226
|
The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners. Length = 226 |
| >gnl|CDD|233208 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Score = 209 bits (534), Expect = 7e-55
Identities = 144/565 (25%), Positives = 259/565 (45%), Gaps = 80/565 (14%)
Query: 631 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGY---ITGNITISGYP----KK 683
+L + G +PG LT ++G G+G +TL+ +A T G+ + G IT G KK
Sbjct: 76 ILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIAS-NTDGFHIGVEGVITYDGITPEEIKK 134
Query: 684 QETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPE--VDSETRKMFI----DEVMEL 737
+ Y + D+H P +T+ E+L F+A + +P+ D +R+ + D M
Sbjct: 135 HYRGDVV--YNAETDVHFPHLTVGETLDFAARCK-TPQNRPDGVSREEYAKHIADVYMAT 191
Query: 738 VELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA---AIV 794
L+ R + VG V G+S +RKR++IA + I D T GLD+ A
Sbjct: 192 YGLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLGGAKIQCWDNATRGLDSATALEFIRA 251
Query: 795 MRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLGRHSCHLISYFEA 854
++T N +DT T + I+Q S D +E FD++ ++ G +IY GP + YFE
Sbjct: 252 LKTSANILDT--TPLVAIYQCSQDAYELFDKVIVLYE-GYQIYFGP----ADKAKQYFEK 304
Query: 855 I----PGVQKIKDGYNPATWMLEVSAASQELALG----------IDFTEHYKRSDLYRRN 900
+ P Q D ++ +++ ++ +F +++ S Y
Sbjct: 305 MGFKCPDRQTTAD------FLTSLTSPAERQIKPGYEKKVPRTPQEFETYWRNSPEY--- 355
Query: 901 KALIEDLSRP-----PPGSKDLYFPTQFSQSS-------------WIQFVACLWKQHWSY 942
L++++ +K+ Y + ++ S +Q CL +
Sbjct: 356 AQLMKEIDEYLDRCSESDTKEAYRESHVAKQSKRTRPSSPYTVSFSMQVKYCLARNFLRM 415
Query: 943 WRNPPYTAVRFFFTAFIALLFGSLFWDLGGRTKRNQDLFNAMGSMFTAVLFLGVQYCSSV 1002
NP +T F +AL+ S+F++L K D ++ G++F A+LF SS+
Sbjct: 416 KGNPSFTLFMVFGNIIMALILSSVFYNL---PKNTSDFYSRGGALFFAILFNAF---SSL 469
Query: 1003 QPIVSV--ERTVFYREKAAGMYAGIPWA--LAQVMIEIPYILVQSVVYGAIVYAMIGFEW 1058
I S+ R + + + +Y P A +A ++ EIP+ +++SVV+ I+Y M+ F
Sbjct: 470 LEIASMYEARPIVEKHRKYALYH--PSADAIASIISEIPFKIIESVVFNIILYFMVNFRR 527
Query: 1059 TAAKFFWYIFFMYFTLLFFTFYGMMAVALTPNHHIAAIVSTLFYGLWNVFSGFIIPRPRI 1118
TA +FF+Y+ ++ L + A+T A + + ++++GF IPRP +
Sbjct: 528 TAGRFFFYLLILFICTLAMSHLFRSIGAVTKTLSEAMTPAAILLLALSIYTGFAIPRPSM 587
Query: 1119 PIWWRWYYWANPIAWTLYGLVASQF 1143
W +W Y+ NP+A+ L+ ++F
Sbjct: 588 LGWSKWIYYVNPLAYAFESLMVNEF 612
|
[Transport and binding proteins, Other]. Length = 1394 |
| >gnl|CDD|216273 pfam01061, ABC2_membrane, ABC-2 type transporter | Back alignment and domain information |
|---|
Score = 182 bits (463), Expect = 3e-52
Identities = 60/215 (27%), Positives = 108/215 (50%), Gaps = 7/215 (3%)
Query: 930 QFVACLWKQHWSYWRNPPYT-AVRFFFTAFIALLFGSLFWDLGGRTKRNQDLFNAMGSMF 988
Q A L ++ WR+P R +AL+FG++F + N G +F
Sbjct: 2 QLKALLKREFLRRWRDPSLGLLWRLIQPLLMALVFGTVFG----NLDTSLGGLNRPGLLF 57
Query: 989 TAVLFLGVQYCSSVQPIVSVERTVFYREKAAGMYAGIPWALAQVMIEIPYILVQSVVYGA 1048
++LF + + P+ ER V RE A+ +Y+ + LA++++E+P L+Q++++
Sbjct: 58 FSILFNAFSSLTGISPVFIRERGVLERELASPLYSPSAYVLAKILVELPISLLQAIIFLL 117
Query: 1049 IVYAMIGFEWTAAKFFWYIFFMYFTLLFFTFYGMMAVALTPNHHIAAIVSTLFYGLWNVF 1108
IVY M+G + +FF ++ + T L + G+ AL P+ A+ + L +
Sbjct: 118 IVYFMVGLPVS--RFFLFLLVLLLTALAASGLGLFIAALAPSFEDASQIGPLLLLPLLLL 175
Query: 1109 SGFIIPRPRIPIWWRWYYWANPIAWTLYGLVASQF 1143
SGF IP +P W +W Y+ NP+ + + L A++F
Sbjct: 176 SGFFIPVDSMPGWLQWIYYLNPLTYAIEALRANEF 210
|
Length = 210 |
| >gnl|CDD|233207 TIGR00955, 3a01204, The Eye Pigment Precursor Transporter (EPP) Family protein | Back alignment and domain information |
|---|
Score = 182 bits (464), Expect = 4e-48
Identities = 117/488 (23%), Positives = 227/488 (46%), Gaps = 42/488 (8%)
Query: 51 LKVLGLDVCADTMVGDE-MIRGISGGQKKRVTTG-EMMVGPALALFMDEISTGLDSSTTF 108
L+ LGL CA+T +G ++G+SGG++KR+ E++ P L LF DE ++GLDS +
Sbjct: 145 LQALGLRKCANTRIGVPGRVKGLSGGERKRLAFASELLTDPPL-LFCDEPTSGLDSFMAY 203
Query: 109 QIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLEFFASMG 168
+V L+ + T + ++ QP+ E ++LFD IIL+++G++ Y G + + FF+ +G
Sbjct: 204 SVVQVLK-GLAQKGKTIICTIHQPSSELFELFDKIILMAEGRVAYLGSPDQAVPFFSDLG 262
Query: 169 FRCPKRKGVADFLQEVTSRKDQRQYWAHKEKPYRFVTVQEFAEAFQSFHVGQKISDELRT 228
CP+ ADF +V + + + +++ ++F +G+ +
Sbjct: 263 HPCPENYNPADFYVQVLAVIPGSE-----NESRE--RIEKICDSFAVSDIGRDMLVNTNL 315
Query: 229 PFDKSKS------------HRAALTTETYGVGKRELLKANISRELLLMKRNSFVYIFKLI 276
K+ + A+ T+ Y + KR L ++ R+ LL+K +LI
Sbjct: 316 WSGKAGGLVKDSENMEGIGYNASWWTQFYALLKRSWL--SVLRDPLLLK-------VRLI 366
Query: 277 QIAFVAVVYMTLFLRTKMHKDTVTDGGIFAGATFFAITMVNF-NGFSEISMTIAKLPVFY 335
Q A++ ++L + + V + GA F +T + F N F I++ A+LPVF
Sbjct: 367 QTMMTAILIGLIYLGQGLTQKGVQNIN---GALFLFLTNMTFQNVFPVINVFTAELPVFL 423
Query: 336 KQRDFRFFPPWAYAIPSWILKIPVSFLEVAVWVFLSYYVVGYDSNAGRFFKQYALLLGVN 395
++ + AY + I ++P+ + A++ ++Y+++G S A F L+ V
Sbjct: 424 RETRSGLYRVSAYFLAKTIAELPLFIILPALFTSITYWMIGLRSGATHFLTFLFLVTLVA 483
Query: 396 QMASALFRFIAVTGRNMVVANTFGSFALLVLLSLGGFILSREDIKKWWKWAYWCSPLTYA 455
+A++ I+ + +A T G ++ L GGF ++ + I ++KW + S Y
Sbjct: 484 NVATSFGYLISCAFSSTSMALTVGPPFVIPFLLFGGFFINSDSIPVYFKWLSYLSWFRYG 543
Query: 456 QNAIVANEFLGHSWKKFTQDSSETL----GVQVLKSRGFFAHEYWYWLGLGALFGFVLLL 511
++ N++ + T ++ G +L++ F + +L L L +
Sbjct: 544 NEGLLINQWSDVDNIECTSANTTGPCPSSGEVILETLSFRNAD--LYLDLIGLVILIFFF 601
Query: 512 NFAYTLAL 519
AL
Sbjct: 602 RLLAYFAL 609
|
[Transport and binding proteins, Other]. Length = 617 |
| >gnl|CDD|215634 PLN03211, PLN03211, ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Score = 177 bits (451), Expect = 2e-46
Identities = 131/497 (26%), Positives = 242/497 (48%), Gaps = 61/497 (12%)
Query: 601 PHSLTFDEVVYSVDMPEEMKVQGVLEDKLV-----------------LLNGVSGAFRPGV 643
P +L F +V Y V E MK +G +++ +LNGV+G PG
Sbjct: 37 PITLKFMDVCYRVKF-ENMKNKGSNIKRILGHKPKISDETRQIQERTILNGVTGMASPGE 95
Query: 644 LTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPF 703
+ A++G SG+GK+TL++ LAGR G TG I + ++ R G+ Q+DI P
Sbjct: 96 ILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPTKQILKRT-GFVTQDDILYPH 154
Query: 704 VTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKR 763
+T+ E+L+F + LRL + + + + + V+ + L +++G + G+S +RKR
Sbjct: 155 LTVRETLVFCSLLRLPKSLTKQEKILVAESVISELGLTKCENTIIGNSFIRGISGGERKR 214
Query: 764 LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAF 823
++IA E++ NPS++ +DEPTSGLDA AA ++ T+ + G+T+V ++HQPS +++ F
Sbjct: 215 VSIAHEMLINPSLLILDEPTSGLDATAAYRLVLTLGSLAQKGKTIVTSMHQPSSRVYQMF 274
Query: 824 DELFLMKRGGQEIYVGPLGRHSCHLISYFEAIPGVQKIKDGYNPATWMLEVSAASQELAL 883
D + ++ G+ ++ G G + ++YFE++ NPA ++L +LA
Sbjct: 275 DSVLVLSE-GRCLFFGK-GSDA---MAYFESVGFSPSFP--MNPADFLL-------DLAN 320
Query: 884 GIDFTEHYKRSDLYRRNKALIEDL-SRPPPGSKDLYFPTQFSQ----------------- 925
G+ T+ + ++L+ + P K + F Q
Sbjct: 321 GVCQTDGVSEREKPNVKQSLVASYNTLLAPKVKAAIEMSHFPQANARFVGSASTKEHRSS 380
Query: 926 -----SSWIQFVACLWKQHWSYWRNPPYTAVRFFFTAFIALLFGSLFWDLGGRTKRNQDL 980
S+W + L ++ ++ + +R F ALL G ++W R D+
Sbjct: 381 DRISISTWFNQFSILLQRSLKERKHESFNTLRVFQVIAAALLAGLMWWHSDFR-----DV 435
Query: 981 FNAMGSMFTAVLFLGVQYCSSVQPIVSVERTVFYREKAAGMYAGIPWALAQVMIEIPYIL 1040
+ +G +F +F GV + + ER +F +E+A+GMY + +A+++ ++P L
Sbjct: 436 QDRLGLLFFISIFWGVFPSFNSVFVFPQERAIFVKERASGMYTLSSYFMARIVGDLPMEL 495
Query: 1041 VQSVVYGAIVYAMIGFE 1057
+ ++ + Y M G +
Sbjct: 496 ILPTIFLTVTYWMAGLK 512
|
Length = 659 |
| >gnl|CDD|224054 COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 163 bits (414), Expect = 1e-44
Identities = 65/217 (29%), Positives = 100/217 (46%), Gaps = 13/217 (5%)
Query: 627 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP--KKQ 684
L+GVS PG + L+G +GAGKTTL+ +LAG +G I + GY K+
Sbjct: 16 GDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKP--TSGEILVLGYDVVKEP 73
Query: 685 ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLR 744
R GY Q P +T+ E+L F A L + ++E R I+E++EL L
Sbjct: 74 AKVRRRIGYVPQEPSLYPELTVRENLEFFARLYGLSKEEAEER---IEELLELFGLEDKA 130
Query: 745 QSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT 804
V LS ++RL+IA+ L+ +P ++ +DEPTSGLD + + +R
Sbjct: 131 NKKV-----RTLSGGMKQRLSIALALLHDPELLILDEPTSGLDPESRREIWELLRELAKE 185
Query: 805 GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPL 841
G + + E D + ++ G I G
Sbjct: 186 GGVTILLSTHILEEAEELCDRVIILNDGKI-IAEGTP 221
|
Length = 293 |
| >gnl|CDD|216273 pfam01061, ABC2_membrane, ABC-2 type transporter | Back alignment and domain information |
|---|
Score = 156 bits (396), Expect = 4e-43
Identities = 68/216 (31%), Positives = 109/216 (50%), Gaps = 8/216 (3%)
Query: 251 ELLKANISRELLLMKRNSFV-YIFKLIQIAFVAVVYMTLFLRTKMHKDTVTDGGIFAGAT 309
LKA + RE L R+ + +++LIQ +A+V+ T+F DT G G
Sbjct: 1 TQLKALLKREFLRRWRDPSLGLLWRLIQPLLMALVFGTVFGNL----DTSLGGLNRPGLL 56
Query: 310 FFAITMVNFNGFSEISMT-IAKLPVFYKQRDFRFFPPWAYAIPSWILKIPVSFLEVAVWV 368
FF+I F+ + IS I + V ++ + P AY + ++++P+S L+ +++
Sbjct: 57 FFSILFNAFSSLTGISPVFIRERGVLERELASPLYSPSAYVLAKILVELPISLLQAIIFL 116
Query: 369 FLSYYVVGYDSNAGRFFKQYALLLGVNQMASALFRFIAVTGRNMVVANTFGSFALLVLLS 428
+ Y++VG + RFF +LL AS L FIA + A+ G LL LL
Sbjct: 117 LIVYFMVGLPVS--RFFLFLLVLLLTALAASGLGLFIAALAPSFEDASQIGPLLLLPLLL 174
Query: 429 LGGFILSREDIKKWWKWAYWCSPLTYAQNAIVANEF 464
L GF + + + W +W Y+ +PLTYA A+ ANEF
Sbjct: 175 LSGFFIPVDSMPGWLQWIYYLNPLTYAIEALRANEF 210
|
Length = 210 |
| >gnl|CDD|213200 cd03233, ABCG_PDR_domain1, First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 145 bits (367), Expect = 2e-39
Identities = 39/91 (42%), Positives = 58/91 (63%)
Query: 65 GDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGT 124
G+E +RGISGG++KRV+ E +V A L D + GLDSST +I+ C+R + T
Sbjct: 112 GNEFVRGISGGERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTT 171
Query: 125 AVISLLQPAPETYDLFDDIILLSDGQIVYQG 155
+SL Q + E YDLFD +++L +G+ +Y G
Sbjct: 172 TFVSLYQASDEIYDLFDKVLVLYEGRQIYYG 202
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 202 |
| >gnl|CDD|215599 PLN03140, PLN03140, ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Score = 153 bits (388), Expect = 2e-37
Identities = 163/645 (25%), Positives = 278/645 (43%), Gaps = 106/645 (16%)
Query: 628 KLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGY-ITGNITISGYPKKQET 686
KL +L SG +P +T L+G +GKTTL+ LAG+ ++G IT +GY +
Sbjct: 177 KLTILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEFV 236
Query: 687 FARISGYCEQNDIHSPFVTIYESLLFSAWLR--------LS--------------PEVD- 723
+ S Y QND+H +T+ E+L FSA + LS EVD
Sbjct: 237 PRKTSAYISQNDVHVGVMTVKETLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDL 296
Query: 724 --------SETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPS 775
+ D ++++ L+ + ++VG + G+S Q+KR+T +V
Sbjct: 297 FMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMIRGISGGQKKRVTTGEMIVGPTK 356
Query: 776 IIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKRGGQ 834
+FMDE ++GLD+ +++ ++ V T TV+ ++ QP+ + F+ FD++ L+ GQ
Sbjct: 357 TLFMDEISTGLDSSTTYQIVKCLQQIVHLTEATVLMSLLQPAPETFDLFDDIILLSE-GQ 415
Query: 835 EIYVGPLGRHSCHLISYFEAIPGVQKIKDGYNPATWMLEVSAASQELALGID-------- 886
+Y GP H++ +FE+ G K + A ++ EV++ + D
Sbjct: 416 IVYQGPRD----HILEFFESC-GF-KCPERKGTADFLQEVTSKKDQEQYWADRNKPYRYI 469
Query: 887 ----FTEHYKRSDLYRRNKALIEDLSRPPPGSKD----LYFPTQFSQSSWIQFVACLWKQ 938
F E +K + L +LS P S+ L F +++S AC W +
Sbjct: 470 SVSEFAERFKS---FHVGMQLENELSVPFDKSQSHKAALVF-SKYSVPKMELLKAC-WDK 524
Query: 939 HWSYW-RNPPYTAVRFFFTAFIALLFGSLFWDLGGRTKRNQD--------LFNAMGSMFT 989
W RN + +A + ++F T+ +D LF+ + +MF
Sbjct: 525 EWLLMKRNAFVYVFKTVQIIIVAAIASTVFLRTEMHTRNEEDGALYIGALLFSMIINMFN 584
Query: 990 AVLFLGVQYCSSVQPIVSVERTVFYREKAAGMYAGIPWALAQVMIEIPYILVQSVVYGAI 1049
L ++ VFY+++ + + L ++ IP +++SVV+ I
Sbjct: 585 GFAELA---------LMIQRLPVFYKQRDLLFHPPWTFTLPTFLLGIPISIIESVVWVVI 635
Query: 1050 VYAMIGFEWTAAKFFWYIFFMYFTLLFFTFYGMMAVALTPNHHIAAIVSTLFYG------ 1103
Y IGF A++ FF L+F MA + IA++ T+
Sbjct: 636 TYYSIGFAPEASR-----FFKQLLLVFLI--QQMAAGIF--RLIASVCRTMIIANTGGAL 686
Query: 1104 -LWNVF--SGFIIPRPRIPIWWRWYYWANPIAWTLYGLVASQFGD---MDDKKMDTGETV 1157
L VF GFI+P+ IP WW W YW +P+++ L ++ M+ D +
Sbjct: 687 VLLLVFLLGGFILPKGEIPNWWEWAYWVSPLSYGFNALAVNEMFAPRWMNKMASDNSTRL 746
Query: 1158 KQFLKDYFDFKHD----FLGVVAAVLVVFAVLFGFLFALGIKMFN 1198
+ + FD D ++GV A L+ F +LF LF L + N
Sbjct: 747 GTAVLNIFDVFTDKNWYWIGVGA--LLGFTILFNVLFTLALTYLN 789
|
Length = 1470 |
| >gnl|CDD|213200 cd03233, ABCG_PDR_domain1, First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 128 bits (324), Expect = 1e-33
Identities = 60/219 (27%), Positives = 105/219 (47%), Gaps = 38/219 (17%)
Query: 626 EDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGY--ITGNITISGYPKK 683
K+ +L SG +PG + ++G G+G +TL+ LA R T G + G+I +G P K
Sbjct: 17 RSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANR-TEGNVSVEGDIHYNGIPYK 75
Query: 684 Q--ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELN 741
+ E + Y + D+H P +T+ E+L F+ +
Sbjct: 76 EFAEKYPGEIIYVSEEDVHFPTLTVRETLDFALRCK------------------------ 111
Query: 742 PLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT 801
G V G+S +RKR++IA LV+ S++ D T GLD+ A +++ +R
Sbjct: 112 -------GNEFVRGISGGERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEILKCIRTM 164
Query: 802 VD-TGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVG 839
D T +++Q S +I++ FD++ ++ G++IY G
Sbjct: 165 ADVLKTTTFVSLYQASDEIYDLFDKVLVL-YEGRQIYYG 202
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 202 |
| >gnl|CDD|213230 cd03263, ABC_subfamily_A, ATP-binding cassette domain of the lipid transporters, subfamily A | Back alignment and domain information |
|---|
Score = 125 bits (316), Expect = 3e-32
Identities = 60/206 (29%), Positives = 102/206 (49%), Gaps = 20/206 (9%)
Query: 632 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYPKKQETFA- 688
++ +S G + L+G +GAGKTT + +L G R T +G I+GY + + A
Sbjct: 18 VDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPT----SGTAYINGYSIRTDRKAA 73
Query: 689 -RISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSL 747
+ GYC Q D +T+ E L F A L+ P+ K ++ ++ ++ L
Sbjct: 74 RQSLGYCPQFDALFDELTVREHLRFYARLKGLPK---SEIKEEVELLLRVLGLTDKANKR 130
Query: 748 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT 807
LS +++L++A+ L+ PS++ +DEPTSGLD + + + V GR+
Sbjct: 131 AR-----TLSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPASRRAIWDLI-LEVRKGRS 184
Query: 808 VVCTIHQPSIDIFEAF-DELFLMKRG 832
++ T H S+D EA D + +M G
Sbjct: 185 IILTTH--SMDEAEALCDRIAIMSDG 208
|
The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. Length = 220 |
| >gnl|CDD|213192 cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 118 bits (298), Expect = 6e-30
Identities = 56/210 (26%), Positives = 96/210 (45%), Gaps = 23/210 (10%)
Query: 631 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQET---F 687
L+ +S + G ++G +G+GK+TL+ +L G G +G + + G + +
Sbjct: 16 ALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLL--GPTSGEVLVDGKDLTKLSLKEL 73
Query: 688 ARISGYCEQNDIHSP---FV--TIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP 742
R G QN P F T+ E + F PE + E R ++E +ELV L
Sbjct: 74 RRKVGLVFQN----PDDQFFGPTVEEEVAFGLENLGLPEEEIEER---VEEALELVGLEG 126
Query: 743 LRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV 802
LR LS Q++R+ IA L +P I+ +DEPT+GLD ++ ++
Sbjct: 127 LRDRSP-----FTLSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPAGRRELLELLKKLK 181
Query: 803 DTGRTVVCTIHQPSIDIFEAFDELFLMKRG 832
G+T++ H + E D + +++ G
Sbjct: 182 AEGKTIIIVTHDLD-LLLELADRVIVLEDG 210
|
Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 211 |
| >gnl|CDD|213231 cd03264, ABC_drug_resistance_like, ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Score = 115 bits (291), Expect = 3e-29
Identities = 70/208 (33%), Positives = 104/208 (50%), Gaps = 15/208 (7%)
Query: 627 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP--KKQ 684
K L+GVS PG+ L+G +GAGKTTLM +LA G I I G K+
Sbjct: 11 GKKRALDGVSLTLGPGM-YGLLGPNGAGKTTLMRILATLTPPSS--GTIRIDGQDVLKQP 67
Query: 685 ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLR 744
+ R GY Q P T+ E L + AWL+ + S+ K +DEV+ELV L
Sbjct: 68 QKLRRRIGYLPQEFGVYPNFTVREFLDYIAWLK---GIPSKEVKARVDEVLELVNLGDRA 124
Query: 745 QSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT 804
+ +G LS R+R+ IA LV +PSI+ +DEPT+GLD I R + + +
Sbjct: 125 KKKIG-----SLSGGMRRRVGIAQALVGDPSILIVDEPTAGLDP-EERIRFRNLLSELGE 178
Query: 805 GRTVVCTIHQPSIDIFEAFDELFLMKRG 832
R V+ + H D+ +++ ++ +G
Sbjct: 179 DRIVILSTHIVE-DVESLCNQVAVLNKG 205
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|219810 pfam08370, PDR_assoc, Plant PDR ABC transporter associated | Back alignment and domain information |
|---|
Score = 103 bits (259), Expect = 1e-26
Identities = 35/64 (54%), Positives = 45/64 (70%)
Query: 469 WKKFTQDSSETLGVQVLKSRGFFAHEYWYWLGLGALFGFVLLLNFAYTLALTFLDPFEKP 528
W K S+ETLG VLKSRG F YWYW+G+GAL GF +L N +TLALT+L+P K
Sbjct: 1 WSKPFSGSNETLGEAVLKSRGLFTEAYWYWIGVGALLGFTILFNILFTLALTYLNPLGKS 60
Query: 529 RAVI 532
+A++
Sbjct: 61 QAIV 64
|
This domain is found on the C-terminus of ABC-2 type transporter domains (pfam01061). It seems to be associated with the plant pleiotropic drug resistance (PDR) protein family of ABC transporters. Like in yeast, plant PDR ABC transporters may also play a role in the transport of antifungal agents (pfam06422). The PDR family is characterized by a configuration in which the ABC domain is nearer the N-terminus of the protein than the transmembrane domain. Length = 65 |
| >gnl|CDD|213202 cd03235, ABC_Metallic_Cations, ATP-binding cassette domain of the metal-type transporters | Back alignment and domain information |
|---|
Score = 102 bits (257), Expect = 2e-24
Identities = 58/208 (27%), Positives = 102/208 (49%), Gaps = 21/208 (10%)
Query: 632 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYPKKQETFAR 689
L VS +PG A++G +GAGK+TL+ + G + T +G+I + G P ++E R
Sbjct: 15 LEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPT----SGSIRVFGKPLEKER-KR 69
Query: 690 ISGYCEQN---DIHSPFVTIYESLLFSAW--LRLSPEVDSETRKMFIDEVMELVELNPLR 744
I GY Q D P +++ + +L + L + + +DE +E V L+ L
Sbjct: 70 I-GYVPQRRSIDRDFP-ISVRDVVLMGLYGHKGLFRRLSKADKAK-VDEALERVGLSELA 126
Query: 745 QSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT 804
+G LS Q++R+ +A LV +P ++ +DEP +G+D + + +R
Sbjct: 127 DRQIGE-----LSGGQQQRVLLARALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRRE 181
Query: 805 GRTVVCTIHQPSIDIFEAFDELFLMKRG 832
G T++ H + + E FD + L+ R
Sbjct: 182 GMTILVVTHDLGL-VLEYFDRVLLLNRT 208
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. Length = 213 |
| >gnl|CDD|224045 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 102 bits (256), Expect = 6e-24
Identities = 61/216 (28%), Positives = 99/216 (45%), Gaps = 29/216 (13%)
Query: 630 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GNITISGYPKKQET 686
+L+ +S + G +T ++G +G+GK+TL+ LAG + G + I+ K+
Sbjct: 16 PILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKE-- 73
Query: 687 FARISGYCEQNDIHSPFVTIYESLLF------SAWLRLSPEVDSETRKMFIDEVMELVEL 740
A+ Y Q+ +T+YE +L + R S E + ++E +EL+ L
Sbjct: 74 LAKKLAYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEI-----VEEALELLGL 128
Query: 741 NPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN 800
L V LS +R+R+ IA L I+ +DEPTS LD V+ +R+
Sbjct: 129 EHLADR-----PVDELSGGERQRVLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRD 183
Query: 801 -TVDTGRTVVCTIHQPSIDIFEAF---DELFLMKRG 832
+ G TVV +H D+ A D L L+K G
Sbjct: 184 LNREKGLTVVMVLH----DLNLAARYADHLILLKDG 215
|
Length = 258 |
| >gnl|CDD|213222 cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein | Back alignment and domain information |
|---|
Score = 98.3 bits (246), Expect = 5e-23
Identities = 67/219 (30%), Positives = 101/219 (46%), Gaps = 32/219 (14%)
Query: 628 KLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GNITISGYPKKQ 684
K+ L GVS + G A++G SG+GK+TL+++L G R T G + IS +K+
Sbjct: 16 KVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKE 75
Query: 685 ETFAR---ISGYCEQNDIHS--PFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVE 739
R I G+ Q+ + P +T E++ L L+ E R+ EL+E
Sbjct: 76 LAAFRRRHI-GFVFQS--FNLLPDLTALENVELP--LLLAGVPKKERRER----AEELLE 126
Query: 740 LNPLRQSLVGLPG-----VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV 794
VGL S LS Q++R+ IA L +P II DEPT LD+ V
Sbjct: 127 R-------VGLGDRLNHYPSELSGGQQQRVAIARALANDPKIILADEPTGNLDSETGKEV 179
Query: 795 MRTVRNTV-DTGRTVVCTIHQPSIDIFEAFDELFLMKRG 832
M +R + G T+V H P ++ E D + ++ G
Sbjct: 180 MELLRELNKEAGTTIVVVTHDP--ELAEYADRIIELRDG 216
|
This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. Length = 218 |
| >gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins | Back alignment and domain information |
|---|
Score = 96.4 bits (241), Expect = 9e-23
Identities = 49/211 (23%), Positives = 82/211 (38%), Gaps = 49/211 (23%)
Query: 627 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GNITISGYPKK 683
+L+ +S + G + ++G +GAGK+TL+ LAG + + G I ++ K
Sbjct: 10 GGRTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLSPK 69
Query: 684 QETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPL 743
+ AR Y Q +EL+ L L
Sbjct: 70 E--LARKIAYVPQ-------------------------------------ALELLGLAHL 90
Query: 744 RQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD 803
+ LS +R+R+ +A L P I+ +DEPTS LD ++ +R
Sbjct: 91 ADR-----PFNELSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLAR 145
Query: 804 -TGRTVVCTIHQPSIDIFEAFDELFLMKRGG 833
G+TVV +H ++ D + L+K G
Sbjct: 146 ERGKTVVMVLHDLNL-AARYADRVILLKDGR 175
|
ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. Length = 180 |
| >gnl|CDD|213197 cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A | Back alignment and domain information |
|---|
Score = 94.4 bits (236), Expect = 3e-22
Identities = 45/205 (21%), Positives = 78/205 (38%), Gaps = 53/205 (25%)
Query: 632 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYP--KKQETF 687
L+ +S G + L+G +GAGKTTL+ ++ G + G I + G K+ E
Sbjct: 16 LDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSG----EIKVLGKDIKKEPEEV 71
Query: 688 ARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSL 747
R GY + +T+ E+L S
Sbjct: 72 KRRIGYLPEEPSLYENLTVRENLKLS---------------------------------- 97
Query: 748 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT 807
G ++RL +A L+ +P ++ +DEPTSGLD + +R G+T
Sbjct: 98 ------GG----MKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKT 147
Query: 808 VVCTIHQPSIDIFEAFDELFLMKRG 832
++ + H + D + ++ G
Sbjct: 148 ILLSSHILE-EAERLCDRVAILNNG 171
|
This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 173 |
| >gnl|CDD|213201 cd03234, ABCG_White, White pigment protein homolog of ABCG transporter subfamily | Back alignment and domain information |
|---|
Score = 95.8 bits (239), Expect = 4e-22
Identities = 38/104 (36%), Positives = 64/104 (61%), Gaps = 3/104 (2%)
Query: 53 VLGLDVCADTMVGDEMIRGISGGQKKRVTTG-EMMVGPALALFMDEISTGLDSSTTFQIV 111
+ L A T +G +++GISGG+++RV+ +++ P + L +DE ++GLDS T +V
Sbjct: 125 DVLLRDLALTRIGGNLVKGISGGERRRVSIAVQLLWDPKV-LILDEPTSGLDSFTALNLV 183
Query: 112 NCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQG 155
+ L Q N ++++ QP + + LFD I+LLS G+IVY G
Sbjct: 184 STLSQLARRNR-IVILTIHQPRSDLFRLFDRILLLSSGEIVYSG 226
|
The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners. Length = 226 |
| >gnl|CDD|213226 cd03259, ABC_Carb_Solutes_like, ATP-binding cassette domain of the carbohydrate and solute transporters-like | Back alignment and domain information |
|---|
Score = 94.5 bits (236), Expect = 1e-21
Identities = 62/213 (29%), Positives = 98/213 (46%), Gaps = 23/213 (10%)
Query: 627 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GNITISGYPKK 683
+ L+ +S PG AL+G SG GKTTL+ ++AG R G I ++G P +
Sbjct: 11 GSVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPPE 70
Query: 684 QETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPL 743
+ R G Q+ P +T+ E++ F LR P+ + R + E++ELV L L
Sbjct: 71 R----RNIGMVFQDYALFPHLTVAENIAFGLKLRGVPKAEIRAR---VRELLELVGLEGL 123
Query: 744 RQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT-V 802
LS Q++R+ +A L PS++ +DEP S LDA+ + ++
Sbjct: 124 LNRYP-----HELSGGQQQRVALARALAREPSLLLLDEPLSALDAKLREELREELKELQR 178
Query: 803 DTGRTVVCTIHQPSIDIFEAF---DELFLMKRG 832
+ G T + H D EA D + +M G
Sbjct: 179 ELGITTIYVTH----DQEEALALADRIAVMNEG 207
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 213 |
| >gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding protein-dependent transport systems | Back alignment and domain information |
|---|
Score = 93.4 bits (233), Expect = 1e-21
Identities = 54/207 (26%), Positives = 82/207 (39%), Gaps = 51/207 (24%)
Query: 632 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYPKKQETFAR 689
LN VS G + AL+G SG+GK+TL+ +AG G +I I G E
Sbjct: 16 LNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSG----SILIDG-----EDLTD 66
Query: 690 ISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVG 749
+ V + LF L+ V+E + L
Sbjct: 67 LEDELPPLRRRIGMV-FQDFALFP---HLT--------------VLENIAL--------- 99
Query: 750 LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTV 808
GLS Q++R+ +A L +P ++ +DEPTS LD V +++ G TV
Sbjct: 100 -----GLSGGQQQRVALARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITV 154
Query: 809 VCTIHQPSIDIFEAF---DELFLMKRG 832
V H D+ EA D + +++ G
Sbjct: 155 VLVTH----DLDEAARLADRVVVLRDG 177
|
This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 178 |
| >gnl|CDD|224046 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 94.6 bits (236), Expect = 2e-21
Identities = 52/209 (24%), Positives = 97/209 (46%), Gaps = 19/209 (9%)
Query: 631 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARI 690
+L +S + G +TAL+G +GAGK+TL+ + G +G I I G P ++
Sbjct: 19 VLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKP--SSGEIKIFGKPVRKRRKRLR 76
Query: 691 SGYCEQNDIHSPF-----VTIYESLLFSAWLRLS--PEVDSETRKMFIDEVMELVELNPL 743
GY Q S +T+ + +L + + ++ + ++ +DE +E V + L
Sbjct: 77 IGYVPQ---KSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEK-VDEALERVGMEDL 132
Query: 744 RQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD 803
R +G LS Q++R+ +A L NP ++ +DEP +G+D + ++
Sbjct: 133 RDRQIG-----ELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQ 187
Query: 804 TGRTVVCTIHQPSIDIFEAFDELFLMKRG 832
G+TV+ H + + FD + + R
Sbjct: 188 EGKTVLMVTHDLGL-VMAYFDRVICLNRH 215
|
Length = 254 |
| >gnl|CDD|215634 PLN03211, PLN03211, ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Score = 98.8 bits (246), Expect = 6e-21
Identities = 95/407 (23%), Positives = 191/407 (46%), Gaps = 31/407 (7%)
Query: 41 QEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTG-EMMVGPALALFMDEIS 99
QE ++ + + LGL C +T++G+ IRGISGG++KRV+ EM++ P+L L +DE +
Sbjct: 176 QEKILVAESVISELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSL-LILDEPT 234
Query: 100 TGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPREL 159
+GLD++ +++V L T V S+ QP+ Y +FD +++LS+G+ ++ G
Sbjct: 235 SGLDATAAYRLVLTLGSLAQ-KGKTIVTSMHQPSSRVYQMFDSVLVLSEGRCLFFGKGSD 293
Query: 160 VLEFFASMGFRCPKRKGVADFLQEVTSRKDQRQYWAHKEKPYRFVTVQEFAEAFQSFHVG 219
+ +F S+GF ADFL ++ + Q + +EKP Q ++ +
Sbjct: 294 AMAYFESVGFSPSFPMNPADFLLDLANGVCQTDGVSEREKPN---VKQSLVASYNTLLAP 350
Query: 220 Q-KISDELRTPFDKSKSHRAALTTETYGVGKRELLKANISRELLLMKR-------NSF-- 269
+ K + E+ + + +T+ + R + ++ +L++R SF
Sbjct: 351 KVKAAIEMSHFPQANARFVGSASTKEHRSSDRISISTWFNQFSILLQRSLKERKHESFNT 410
Query: 270 VYIFKLIQIAFVAVVYMTLFLRTKMHKD--TVTD--GGIFAGATFFAITMVNFNGFSEIS 325
+ +F++I A +A + H D V D G +F + F+ + F F+ +
Sbjct: 411 LRVFQVIAAALLAGLMW-------WHSDFRDVQDRLGLLFFISIFWGV----FPSFNSVF 459
Query: 326 MTIAKLPVFYKQRDFRFFPPWAYAIPSWILKIPVSFLEVAVWVFLSYYVVGYDSNAGRFF 385
+ + +F K+R + +Y + + +P+ + +++ ++Y++ G G F
Sbjct: 460 VFPQERAIFVKERASGMYTLSSYFMARIVGDLPMELILPTIFLTVTYWMAGLKPELGAFL 519
Query: 386 KQYALLLGVNQMASALFRFIAVTGRNMVVANTFGSFALLVLLSLGGF 432
+LLG ++ L + + A+T + +L + GGF
Sbjct: 520 LTLLVLLGYVLVSQGLGLALGAAIMDAKKASTIVTVTMLAFVLTGGF 566
|
Length = 659 |
| >gnl|CDD|213193 cd03226, ABC_cobalt_CbiO_domain2, Second domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 91.9 bits (229), Expect = 6e-21
Identities = 59/216 (27%), Positives = 98/216 (45%), Gaps = 37/216 (17%)
Query: 631 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYPKKQETFA 688
+L+ +S G + AL G +GAGKTTL +LAG +++ G +I ++G P K +
Sbjct: 15 ILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSG----SILLNGKPIKAKERR 70
Query: 689 RISGYCEQN-DIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLR--- 744
+ GY Q+ D ++ E LL E+D+ + + V++ ++L L+
Sbjct: 71 KSIGYVMQDVDYQLFTDSVREELLLGL-----KELDAGNEQ--AETVLKDLDLYALKERH 123
Query: 745 -QSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD 803
SL S Q++RL IA L++ ++ DEPTSGLD + V +R
Sbjct: 124 PLSL---------SGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVGELIRELAA 174
Query: 804 TGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVG 839
G+ V+ H D FL K + + +
Sbjct: 175 QGKAVIVITH----------DYEFLAKVCDRVLLLA 200
|
Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 205 |
| >gnl|CDD|224047 COG1122, CbiO, ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 92.7 bits (231), Expect = 7e-21
Identities = 53/222 (23%), Positives = 91/222 (40%), Gaps = 18/222 (8%)
Query: 625 LEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ 684
+ L VS G L+G +G+GK+TL+ +L G +G + + G
Sbjct: 13 YPGRKAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNG--LLKPTSGEVLVDGLDTSS 70
Query: 685 ET----FARISGYCEQNDIHSPFV-TIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVE 739
E + G QN F T+ + + F L E + + E +ELV
Sbjct: 71 EKSLLELRQKVGLVFQNPDDQLFGPTVEDEVAFG--LENLGLPREEIEE-RVAEALELVG 127
Query: 740 LNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 799
L L LS Q++R+ IA L P I+ +DEPT+GLD + ++ ++
Sbjct: 128 LEELLDRPP-----FNLSGGQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRRELLELLK 182
Query: 800 NTV-DTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGP 840
+ G+T++ H + E D + ++ G+ + G
Sbjct: 183 KLKEEGGKTIIIVTHDLE-LVLEYADRVVVL-DDGKILADGD 222
|
Length = 235 |
| >gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily | Back alignment and domain information |
|---|
Score = 91.1 bits (227), Expect = 1e-20
Identities = 35/87 (40%), Positives = 59/87 (67%), Gaps = 1/87 (1%)
Query: 69 IRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVIS 128
+RG+SGG++KRV+ +V LF+DE ++GLDSS+ Q+++ LR+ T + S
Sbjct: 109 LRGLSGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGR-TIICS 167
Query: 129 LLQPAPETYDLFDDIILLSDGQIVYQG 155
+ QP+ E ++LFD ++LLS G+++Y G
Sbjct: 168 IHQPSSEIFELFDKLLLLSQGRVIYFG 194
|
ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. Length = 194 |
| >gnl|CDD|224059 COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 91.4 bits (228), Expect = 2e-20
Identities = 58/222 (26%), Positives = 108/222 (48%), Gaps = 19/222 (8%)
Query: 620 KVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GNIT 676
K+ G+ +K+ L V+ G A++G SG+GK+TL+++L G + T G +
Sbjct: 9 KIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKD 68
Query: 677 ISGYPKKQ--ETFARISGYCEQNDIHS--PFVTIYESLLFSAWLRLSPEVDSETRKMFID 732
++ +K+ + + G+ QN + P +T+ E++ + + RK +
Sbjct: 69 LTKLSEKELAKLRRKKIGFVFQN--FNLLPDLTVLENVELPLLIAG---KSAGRRKRAAE 123
Query: 733 EVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 792
E++E++ L S LS Q++R+ IA L+ NP II DEPT LD++ A
Sbjct: 124 ELLEVLGLEDRLLKKK----PSELSGGQQQRVAIARALINNPKIILADEPTGNLDSKTAK 179
Query: 793 IVMRTVRNTV-DTGRTVVCTIHQPSIDIFEAFDELFLMKRGG 833
V+ +R + G+T++ H P ++ + D + +K G
Sbjct: 180 EVLELLRELNKERGKTIIMVTHDP--ELAKYADRVIELKDGK 219
|
Length = 226 |
| >gnl|CDD|233208 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Score = 97.5 bits (243), Expect = 3e-20
Identities = 108/459 (23%), Positives = 180/459 (39%), Gaps = 77/459 (16%)
Query: 42 EANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTG-EMMVGPALALFMDEIST 100
E + +K+L ++ AD +VG G++ Q+KR+T G E++ P L LF+DE ++
Sbjct: 873 EKMEYVEEVIKLLEMESYADAVVGVPGE-GLNVEQRKRLTIGVELVAKPKLLLFLDEPTS 931
Query: 101 GLDSSTTFQIVNCLRQNIHINSGTAVI-SLLQPAPETYDLFDDIILLSDG-QIVYQGP-- 156
GLDS T + I +R+ + G A++ ++ QP+ ++ FD ++LL G Q VY G
Sbjct: 932 GLDSQTAWSICKLMRKL--ADHGQAILCTIHQPSAILFEEFDRLLLLQKGGQTVYFGDLG 989
Query: 157 --RELVLEFFASMGFR-CPKRKGVADFLQEVTSRKDQRQYWAHKEKPYRFVTVQEFAEAF 213
++ +F G CP+ A+++ EV AH Q++ E +
Sbjct: 990 ENSHTIINYFEKHGAPKCPEDANPAEWMLEVIGAAPG----AHAN--------QDYHEVW 1037
Query: 214 QSFHVGQKIS---DELRTPFDKSKSHRAALTTETYGVGKRELLKANISRELLLMKRNSFV 270
++ Q + D L K++ Y S
Sbjct: 1038 RNSSEYQAVKNELDRLEAELSKAEDDNDPDALSKYAA--------------------SLW 1077
Query: 271 YIFKLIQIAFVAVVYMTL-FLRTKMHKDTVTDGGIFAGATFFAITMVNFNG-----FSEI 324
Y FKL+ + T +L +K +F G TFF + + G F+
Sbjct: 1078 YQFKLVLWRTFQQYWRTPDYLYSKFFLTIF--AALFIGFTFFKVGT-SLQGLQNQMFAVF 1134
Query: 325 SMTI-------AKLPVFYKQRDF--------RFFPPWAYAIPSWILKIPVSFLEVAVWVF 369
T+ LP F QRD R F A+ ++IP + + ++ F
Sbjct: 1135 MATVLFNPLIQQYLPPFVAQRDLYEVRERPSRTFSWLAFIAAQITVEIPYNLVAGTIFFF 1194
Query: 370 LSYYVVGYDSNA-------GRFFKQYALLLGVNQMASALFRFIAVTGRNMVVANTFGSFA 422
+ YY VG+ NA R + L S L + + N A S
Sbjct: 1195 IWYYPVGFYWNASKTGQVHERGVLFWLLSTMFFLYFSTLGQMVISFNPNADNAAVLASLL 1254
Query: 423 LLVLLSLGGFILSREDIKKWWKWAYWCSPLTYAQNAIVA 461
+ LS G + + +W + Y CSP TY A+++
Sbjct: 1255 FTMCLSFCGVLAPPSRMPGFWIFMYRCSPFTYLVQALLS 1293
|
[Transport and binding proteins, Other]. Length = 1394 |
| >gnl|CDD|130234 TIGR01166, cbiO, cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Score = 89.4 bits (222), Expect = 3e-20
Identities = 50/194 (25%), Positives = 84/194 (43%), Gaps = 16/194 (8%)
Query: 626 EDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYPKK 683
+L G++ A G + AL+G +GAGK+TL+ L G R G + + Y +K
Sbjct: 2 PGGPEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRK 61
Query: 684 QETFARIS-GYCEQN---DIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVE 739
R G Q+ + + + + + F L L R+ + E + V
Sbjct: 62 GLLERRQRVGLVFQDPDDQLFAA--DVDQDVAFGP-LNLGLSEAEVERR--VREALTAVG 116
Query: 740 LNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 799
+ LR+ LS ++KR+ IA + P ++ +DEPT+GLD ++ +R
Sbjct: 117 ASGLRERPTHC-----LSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGREQMLAILR 171
Query: 800 NTVDTGRTVVCTIH 813
G TVV + H
Sbjct: 172 RLRAEGMTVVISTH 185
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux [Transport and binding proteins, Cations and iron carrying compounds]. Length = 190 |
| >gnl|CDD|227321 COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 95.8 bits (239), Expect = 4e-20
Identities = 59/218 (27%), Positives = 102/218 (46%), Gaps = 29/218 (13%)
Query: 626 EDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK--- 682
D L+ ++ + G LTAL+G SGAGK+TL+++L G G I ++G
Sbjct: 331 PDGKPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAP--TQGEIRVNGIDLRDL 388
Query: 683 KQETFARISGYCEQNDIHSPFV---TIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVE 739
E + + + QN P++ TI E++L + P+ E I ++
Sbjct: 389 SPEAWRKQISWVSQN----PYLFAGTIRENILLAR-----PDASDEE----IIAALDQAG 435
Query: 740 LNPLRQSLVGLPGV-----SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV 794
L GL V +GLS Q +RL +A L++ S++ +DEPT+ LDA I+
Sbjct: 436 LLEFVPKPDGLDTVIGEGGAGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQII 495
Query: 795 MRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 832
++ ++ +TV+ H+ D +A D + ++ G
Sbjct: 496 LQALQELAK-QKTVLVITHRLE-DAADA-DRIVVLDNG 530
|
Length = 559 |
| >gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain | Back alignment and domain information |
|---|
Score = 86.1 bits (214), Expect = 2e-19
Identities = 29/80 (36%), Positives = 45/80 (56%), Gaps = 1/80 (1%)
Query: 753 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTI 812
V LS QR+R+ +A L+ NP ++ +DEPTSGLD + ++ +R + GRTV+
Sbjct: 78 VPQLSGGQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVT 137
Query: 813 HQPSIDIFEAFDELFLMKRG 832
H P A D + ++K G
Sbjct: 138 HDPE-LAELAADRVIVLKDG 156
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157 |
| >gnl|CDD|130256 TIGR01188, drrA, daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 90.1 bits (224), Expect = 2e-19
Identities = 60/213 (28%), Positives = 95/213 (44%), Gaps = 23/213 (10%)
Query: 627 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYP--K 682
++GV+ R G + +G +GAGKTT + +L R T G ++GY +
Sbjct: 4 GDFKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSG----TARVAGYDVVR 59
Query: 683 KQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP 742
+ R G Q +T E+L L P+ ++E R +E++EL EL
Sbjct: 60 EPRKVRRSIGIVPQYASVDEDLTGRENLEMMGRLYGLPKDEAEER---AEELLELFELGE 116
Query: 743 LRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV 802
VG S R+RL IA L+ P ++F+DEPT+GLD R + +R
Sbjct: 117 AADRPVG-----TYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDYIRALK 171
Query: 803 DTGRTVVCTIHQPSIDIFEA---FDELFLMKRG 832
+ G T++ T H + EA D + ++ G
Sbjct: 172 EEGVTILLTTH----YMEEADKLCDRIAIIDHG 200
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc [Transport and binding proteins, Other]. Length = 302 |
| >gnl|CDD|225183 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 92.3 bits (230), Expect = 6e-19
Identities = 61/213 (28%), Positives = 100/213 (46%), Gaps = 28/213 (13%)
Query: 631 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGY--ITGNITISGYPKKQ---E 685
+L +S PG A++G SG+GK+TL+ +L G Y G I + G
Sbjct: 488 VLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGL----YKPQQGRILLDGVDLNDIDLA 543
Query: 686 TFARISGYCEQNDIHSPFV---TIYESLLFSAWLRLSPEVDSET--RKMFIDEVMELVEL 740
+ R GY Q+ PF+ +I E++ +PE E + E +E
Sbjct: 544 SLRRQVGYVLQD----PFLFSGSIRENIALG-----NPEATDEEIIEAAQLAGAHEFIEN 594
Query: 741 NPLR-QSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 799
P+ + VG G + LS QR+RL +A L++ P I+ +DE TS LD AI+++ +
Sbjct: 595 LPMGYDTPVGEGG-ANLSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQNLL 653
Query: 800 NTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 832
+ GRTV+ H+ S + D + ++ +G
Sbjct: 654 -QILQGRTVIIIAHRLS--TIRSADRIIVLDQG 683
|
Length = 709 |
| >gnl|CDD|213232 cd03265, ABC_DrrA, Daunorubicin/doxorubicin resistance ATP-binding protein | Back alignment and domain information |
|---|
Score = 85.1 bits (211), Expect = 2e-18
Identities = 62/209 (29%), Positives = 95/209 (45%), Gaps = 24/209 (11%)
Query: 632 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYP--KKQETF 687
+ GVS R G + L+G +GAGKTT + +L + T G T++G+ ++
Sbjct: 16 VRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSG----RATVAGHDVVREPREV 71
Query: 688 ARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSL 747
R G Q+ +T +E+L A L V R+ IDE+++ V L L
Sbjct: 72 RRRIGIVFQDLSVDDELTGWENLYIHARLY---GVPGAERRERIDELLDFVGLLEAADRL 128
Query: 748 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GR 806
V S R+RL IA LV P ++F+DEPT GLD + A V + + G
Sbjct: 129 V-----KTYSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGM 183
Query: 807 TVVCTIHQPSIDIFEA---FDELFLMKRG 832
T++ T H + EA D + ++ G
Sbjct: 184 TILLTTH----YMEEAEQLCDRVAIIDHG 208
|
DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|234033 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Score = 88.9 bits (221), Expect = 4e-18
Identities = 70/275 (25%), Positives = 115/275 (41%), Gaps = 49/275 (17%)
Query: 556 GSSNHNTRSGSTDDIRGQQSSSQSLSLAEAEASRPKK-KGMVLPFEPHSLTFDEVVYSVD 614
G+ H G +++++L A RP K V SL F V +
Sbjct: 281 GAQYHARADG--------VAAAEALFAVLDAAPRPLAGKAPVTAAPAPSLEFSGVSVA-- 330
Query: 615 MPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT 672
+ L VS PG AL+G SGAGK+TL+++L G T G I
Sbjct: 331 ----------YPGRRPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIA 380
Query: 673 -GNITISGYPKKQETFARISGYCEQNDIHSPFV---TIYESLLFSAWLRLSPEVDSETRK 728
+ ++ +++ + Q+ PF+ TI E++ + P+
Sbjct: 381 VNGVPLADAD--ADSWRDQIAWVPQH----PFLFAGTIAENIRLAR-----PDASDAE-- 427
Query: 729 MFIDEVMELVELNPLRQSL-VGL-----PGVSGLSTEQRKRLTIAVELVANPSIIFMDEP 782
I E +E L+ +L GL G +GLS Q +RL +A + + ++ +DEP
Sbjct: 428 --IREALERAGLDEFVAALPQGLDTPIGEGGAGLSGGQAQRLALARAFLRDAPLLLLDEP 485
Query: 783 TSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSI 817
T+ LDA A V+ +R + GRTV+ H+ ++
Sbjct: 486 TAHLDAETEAEVLEALRA-LAQGRTVLLVTHRLAL 519
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD. Length = 529 |
| >gnl|CDD|213186 cd03219, ABC_Mj1267_LivG_branched, ATP-binding cassette component of branched chain amino acids transport system | Back alignment and domain information |
|---|
Score = 84.4 bits (210), Expect = 5e-18
Identities = 57/201 (28%), Positives = 92/201 (45%), Gaps = 36/201 (17%)
Query: 629 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GNITISGYPKKQ- 684
LV L+ VS + RPG + L+G +GAGKTTL ++++G R T G + I+G P +
Sbjct: 13 LVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEI 72
Query: 685 ------ETFARISGYCEQNDIHSPF--VTIYESLL--------FSAWLRLSPEVDSETRK 728
TF Q F +T+ E+++ L + + E R+
Sbjct: 73 ARLGIGRTF--------QIP--RLFPELTVLENVMVAAQARTGSGLLLARARREEREARE 122
Query: 729 MFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 788
+E++E V L L G LS Q++RL IA L +P ++ +DEP +GL+
Sbjct: 123 R-AEELLERVGLADLADRPAGE-----LSYGQQRRLEIARALATDPKLLLLDEPAAGLNP 176
Query: 789 RAAAIVMRTVRNTVDTGRTVV 809
+ +R + G TV+
Sbjct: 177 EETEELAELIRELRERGITVL 197
|
The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). Length = 236 |
| >gnl|CDD|213212 cd03245, ABCC_bacteriocin_exporters, ATP-binding cassette domain of bacteriocin exporters, subfamily C | Back alignment and domain information |
|---|
Score = 83.8 bits (208), Expect = 5e-18
Identities = 57/243 (23%), Positives = 101/243 (41%), Gaps = 41/243 (16%)
Query: 602 HSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDV 661
+ F V +S ++ L+ VS R G A++G G+GK+TL+ +
Sbjct: 1 GRIEFRNVSFSYP-----------NQEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKL 49
Query: 662 LAG--RKTGGYI-TGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRL 718
LAG + T G + I + I GY Q D+ + T+ +++ A
Sbjct: 50 LAGLYKPTSGSVLLDGTDIRQLDP-ADLRRNI-GYVPQ-DVTLFYGTLRDNITLGA---- 102
Query: 719 SPEVDSETRKMFIDEVMELVELNPLRQSLVGLP---------GVSGLSTEQRKRLTIAVE 769
P D E ++ EL + + P GLS QR+ + +A
Sbjct: 103 -PLADDE-------RILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARA 154
Query: 770 LVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLM 829
L+ +P I+ +DEPTS +D + + +R + +T++ H+PS+ + D + +M
Sbjct: 155 LLNDPPILLLDEPTSAMDMNSEERLKERLRQLL-GDKTLIIITHRPSLL--DLVDRIIVM 211
Query: 830 KRG 832
G
Sbjct: 212 DSG 214
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. Length = 220 |
| >gnl|CDD|213259 cd03292, ABC_FtsE_transporter, ATP-binding cassette domain of the cell division transporter | Back alignment and domain information |
|---|
Score = 83.6 bits (207), Expect = 6e-18
Identities = 54/190 (28%), Positives = 88/190 (46%), Gaps = 12/190 (6%)
Query: 632 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRK--TGGYITGN-ITISGYPKKQETFA 688
L+G++ + G L+G SGAGK+TL+ ++ + T G I N +S + +
Sbjct: 17 LDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYL 76
Query: 689 RIS-GYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSL 747
R G Q+ P +YE++ F+ L ++ E RK V +EL L
Sbjct: 77 RRKIGVVFQDFRLLPDRNVYENVAFA--LEVTGVPPREIRK----RVPAALELVGLSHKH 130
Query: 748 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT 807
LP + LS +++R+ IA +V +P+I+ DEPT LD +M ++ G T
Sbjct: 131 RALP--AELSGGEQQRVAIARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINKAGTT 188
Query: 808 VVCTIHQPSI 817
VV H +
Sbjct: 189 VVVATHAKEL 198
|
FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. Length = 214 |
| >gnl|CDD|213233 cd03266, ABC_NatA_sodium_exporter, ATP-binding cassette domain of the Na+ transporter | Back alignment and domain information |
|---|
Score = 83.6 bits (207), Expect = 7e-18
Identities = 52/186 (27%), Positives = 90/186 (48%), Gaps = 12/186 (6%)
Query: 630 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFA- 688
++GVS +PG +T L+G +GAGKTT + +LAG G T+ G+ +E
Sbjct: 19 QAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPD--AGFATVDGFDVVKEPAEA 76
Query: 689 -RISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSL 747
R G+ + +T E+L + A L + + ++E+ + + + L
Sbjct: 77 RRRLGFVSDSTGLYDRLTARENLEYFAGLY---GLKGDELTARLEELADRLGMEELLDRR 133
Query: 748 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT 807
VG G ST R+++ IA LV +P ++ +DEPT+GLD A + +R G+
Sbjct: 134 VG-----GFSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRALGKC 188
Query: 808 VVCTIH 813
++ + H
Sbjct: 189 ILFSTH 194
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein. Length = 218 |
| >gnl|CDD|213228 cd03261, ABC_Org_Solvent_Resistant, ATP-binding cassette transport system involved in resistant to organic solvents | Back alignment and domain information |
|---|
Score = 84.1 bits (209), Expect = 7e-18
Identities = 56/218 (25%), Positives = 95/218 (43%), Gaps = 33/218 (15%)
Query: 630 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGG--YITGNITISGYPKKQE 685
+L GV R G + A++G SG+GK+TL+ ++ G R G I G +
Sbjct: 14 TVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELY 73
Query: 686 TFARISGYCEQ-----NDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVEL 740
R G Q + + T++E++ F LR E ++ +E+ E+V
Sbjct: 74 RLRRRMGMLFQSGALFDSL-----TVFENVAF--PLR-------EHTRLSEEEIREIVLE 119
Query: 741 NPLRQSLVGLPGV-----SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM 795
+ VGL G + LS +KR+ +A L +P ++ DEPT+GLD A+ ++
Sbjct: 120 ---KLEAVGLRGAEDLYPAELSGGMKKRVALARALALDPELLLYDEPTAGLDPIASGVID 176
Query: 796 RTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRG 832
+R+ G T + H F D + ++ G
Sbjct: 177 DLIRSLKKELGLTSIMVTHDLD-TAFAIADRIAVLYDG 213
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|234041 TIGR02868, CydC, thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Score = 87.4 bits (217), Expect = 1e-17
Identities = 62/193 (32%), Positives = 92/193 (47%), Gaps = 22/193 (11%)
Query: 632 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP---KKQETFA 688
L+GVS PG A++G SG+GK+TL+ LAG + G +T+ G P Q+
Sbjct: 351 LDGVSLDLPPGERVAILGPSGSGKSTLLATLAGLLDP--LQGEVTLDGVPVSSLDQDEVR 408
Query: 689 RISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLV 748
R C Q D H T+ E+L + P+ E + +E V L ++L
Sbjct: 409 RRVSVCAQ-DAHLFDTTVRENLRLAR-----PDATDEE----LWAALERVGLADWLRALP 458
Query: 749 -GL-----PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV 802
GL G + LS +R+RL +A L+A+ I+ +DEPT LDA A ++ +
Sbjct: 459 DGLDTVLGEGGARLSGGERQRLALARALLADAPILLLDEPTEHLDAETADELLEDLLA-A 517
Query: 803 DTGRTVVCTIHQP 815
+GRTVV H
Sbjct: 518 LSGRTVVLITHHL 530
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Length = 530 |
| >gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug resistance protein-like transporters | Back alignment and domain information |
|---|
Score = 81.3 bits (202), Expect = 1e-17
Identities = 49/205 (23%), Positives = 82/205 (40%), Gaps = 54/205 (26%)
Query: 631 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GNITISGYPKKQETF 687
+L VS +PG A++G SG+GK+TL+ +L T G I + + E+
Sbjct: 17 VLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLD--LESL 74
Query: 688 ARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSL 747
+ Y Q + LFS +R + +
Sbjct: 75 RKNIAYVPQ-----------DPFLFSGTIR--------------ENI------------- 96
Query: 748 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT 807
LS QR+R+ IA L+ +P I+ +DE TS LD A+++ +R + G+T
Sbjct: 97 --------LSGGQRQRIAIARALLRDPPILILDEATSALDPETEALILEALRA-LAKGKT 147
Query: 808 VVCTIHQPSIDIFEAFDELFLMKRG 832
V+ H+ S D + ++ G
Sbjct: 148 VIVIAHRLS--TIRDADRIIVLDDG 170
|
The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 171 |
| >gnl|CDD|188394 TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Score = 82.7 bits (205), Expect = 2e-17
Identities = 60/207 (28%), Positives = 101/207 (48%), Gaps = 21/207 (10%)
Query: 632 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIT--GNITISGYPKKQE---T 686
L+ VS RPG AL+G +GAGK+TL +L T Y+ G I+++G+ ++
Sbjct: 17 LDDVSFTVRPGRFVALLGPNGAGKSTLFSLL----TRLYVAQEGQISVAGHDLRRAPRAA 72
Query: 687 FARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQS 746
AR+ +Q + +++ ++L + A L ++ R I E++ + L
Sbjct: 73 LARLGVVFQQPTL-DLDLSVRQNLRYHAALHGLSRAEARAR---IAELLARLGLAERADD 128
Query: 747 LVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN-TVDTG 805
V L+ R+R+ IA L+ P+++ +DEPT GLD + A + VR D G
Sbjct: 129 KVR-----ELNGGHRRRVEIARALLHRPALLLLDEPTVGLDPASRAAITAHVRALARDQG 183
Query: 806 RTVVCTIHQPSIDIFEAFDELFLMKRG 832
+V+ H +D EA D L ++ RG
Sbjct: 184 LSVLWATHL--VDEIEADDRLVVLHRG 208
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 236 |
| >gnl|CDD|131368 TIGR02315, ABC_phnC, phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 83.1 bits (206), Expect = 2e-17
Identities = 55/224 (24%), Positives = 98/224 (43%), Gaps = 27/224 (12%)
Query: 632 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT---GNITISGYPKKQET 686
L ++ PG A++G SGAGK+TL+ + + G I +IT K ++
Sbjct: 18 LKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKL 77
Query: 687 FARISGYCEQNDIHSPFVTIYESLL---------FSAWLRLSPEVDSETRKMFIDEVMEL 737
RI G Q+ +T+ E++L + + L E D E ++ V L
Sbjct: 78 RRRI-GMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERV-GL 135
Query: 738 VELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT 797
+ R LS Q++R+ IA L P +I DEP + LD + + VM
Sbjct: 136 ADKAYQR--------ADQLSGGQQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDY 187
Query: 798 VRN-TVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGP 840
++ + G TV+ +HQ +D+ + + + + + G+ ++ G
Sbjct: 188 LKRINKEDGITVIINLHQ--VDLAKKYADRIVGLKAGEIVFDGA 229
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates [Transport and binding proteins, Anions]. Length = 243 |
| >gnl|CDD|213223 cd03256, ABC_PhnC_transporter, ATP-binding cassette domain of the binding protein-dependent phosphonate transport system | Back alignment and domain information |
|---|
Score = 82.6 bits (205), Expect = 2e-17
Identities = 54/205 (26%), Positives = 87/205 (42%), Gaps = 33/205 (16%)
Query: 632 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNIT-ISGYPKKQETFA 688
L VS + PG AL+G SGAGK+TL+ L G T G + + T I+ K
Sbjct: 17 LKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQL 76
Query: 689 RI-SGYCEQNDIHSPFVTIYESLL---------FSAWLRLSPEVDSETRKMFIDEVMELV 738
R G Q +++ E++L + + L P+ + + +
Sbjct: 77 RRQIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEE-------KQRALAAL 129
Query: 739 ELNPLRQSLVGLPG-----VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAI 793
E VGL LS Q++R+ IA L+ P +I DEP + LD ++
Sbjct: 130 ER-------VGLLDKAYQRADQLSGGQQQRVAIARALMQQPKLILADEPVASLDPASSRQ 182
Query: 794 VMRTVRN-TVDTGRTVVCTIHQPSI 817
VM ++ + G TV+ ++HQ +
Sbjct: 183 VMDLLKRINREEGITVIVSLHQVDL 207
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 241 |
| >gnl|CDD|213260 cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of the nitrate and sulfonate transporters | Back alignment and domain information |
|---|
Score = 82.1 bits (204), Expect = 2e-17
Identities = 66/230 (28%), Positives = 102/230 (44%), Gaps = 40/230 (17%)
Query: 632 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYPKKQETFAR 689
L +S + G AL+G SG GK+TL+ ++AG R T G + + G P R
Sbjct: 20 LEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSG----EVLVDGEPVTGPGPDR 75
Query: 690 ISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVG 749
GY Q D P++T+ +++ L L +E R + EL+EL VG
Sbjct: 76 --GYVFQQDALLPWLTVLDNVALG--LELQGVPKAEAR----ERAEELLEL-------VG 120
Query: 750 LPGVSG-----LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-D 803
L G LS R+R+ +A L +P ++ +DEP S LDA + + + +
Sbjct: 121 LSGFENAYPHQLSGGMRQRVALARALAVDPDVLLLDEPFSALDALTREQLQEELLDIWRE 180
Query: 804 TGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLGRHSCHLISYFE 853
TG+TV+ H DI EA +FL + V L +++ E
Sbjct: 181 TGKTVLLVTH----DIDEA---VFL----ADRVVV--LSARPGRIVAEVE 217
|
NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|213235 cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of the bacitracin-resistance transporter | Back alignment and domain information |
|---|
Score = 81.1 bits (201), Expect = 4e-17
Identities = 55/185 (29%), Positives = 85/185 (45%), Gaps = 17/185 (9%)
Query: 632 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYPKKQETFAR 689
L+ +S + G + +G +GAGKTT M ++ G + G IT Y K E R
Sbjct: 16 LDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEIT--FDGKSYQKNIEALRR 73
Query: 690 ISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVG 749
I E + P +T E+L A L + IDEV+++V L + V
Sbjct: 74 IGALIEAPGFY-PNLTARENLRLLARLLGIRKKR-------IDEVLDVVGLKDSAKKKVK 125
Query: 750 LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVV 809
G S ++RL IA+ L+ NP ++ +DEPT+GLD + + + D G TV+
Sbjct: 126 -----GFSLGMKQRLGIALALLGNPDLLILDEPTNGLDPDGIKELRELILSLRDQGITVL 180
Query: 810 CTIHQ 814
+ H
Sbjct: 181 ISSHL 185
|
The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. Length = 208 |
| >gnl|CDD|226164 COG3638, COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 81.9 bits (203), Expect = 5e-17
Identities = 64/221 (28%), Positives = 101/221 (45%), Gaps = 21/221 (9%)
Query: 632 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNIT-ISGYPKKQETFA 688
L V+ G + A++G SGAGK+TL+ L G T G I N I+ K+
Sbjct: 20 LKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKL 79
Query: 689 RIS-GYCEQNDIHSPFVTIYESLLF------SAWLRLSPEVDSETRKMFIDEVMELVELN 741
R G Q P +++ E++L S W L E + +D L +
Sbjct: 80 RRDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDA---LERVG 136
Query: 742 PLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR-- 799
L ++ S LS Q++R+ IA LV P II DEP + LD +A VM ++
Sbjct: 137 ILDKAYQR---ASTLSGGQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDI 193
Query: 800 NTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGP 840
N D G TV+ +HQ +D+ + + + + + G+ ++ GP
Sbjct: 194 NQED-GITVIVNLHQ--VDLAKKYADRIIGLKAGRIVFDGP 231
|
Length = 258 |
| >gnl|CDD|226361 COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 83.5 bits (207), Expect = 6e-17
Identities = 62/237 (26%), Positives = 101/237 (42%), Gaps = 29/237 (12%)
Query: 627 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GNITISGYPKK 683
++ +S + G L+G SG GKTTL+ ++AG + + G I I+ P
Sbjct: 16 GDFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVP-- 73
Query: 684 QETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPL 743
R G Q+ P +T+ E++ F L++ ++ K ++E +ELV L
Sbjct: 74 --PEKRPIGMVFQSYALFPHMTVEENVAFG--LKVRKKLKKAEIKARVEEALELVGLEGF 129
Query: 744 RQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN-TV 802
LS Q++R+ +A LV P ++ +DEP S LDA+ + + ++
Sbjct: 130 ADRK-----PHQLSGGQQQRVALARALVPEPKVLLLDEPLSALDAKLREQMRKELKELQR 184
Query: 803 DTGRTVVCTIHQPSIDIFEAF---DELFLMKRG-------GQEIYVGPLGRHSCHLI 849
+ G T V H D EA D + +M G +EIY P R I
Sbjct: 185 ELGITFVYVTH----DQEEALAMSDRIAVMNDGRIEQVGTPEEIYERPATRFVADFI 237
|
Length = 352 |
| >gnl|CDD|188353 TIGR03608, L_ocin_972_ABC, putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Score = 79.6 bits (197), Expect = 1e-16
Identities = 55/199 (27%), Positives = 92/199 (46%), Gaps = 25/199 (12%)
Query: 630 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGG--YITGNITISGYPKKQE 685
V+L+ ++ G + A++G SG+GK+TL++++ + G Y+ G T KK
Sbjct: 12 VILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGQETPPLNSKKAS 71
Query: 686 TFARIS-GYCEQNDIHSPFV-----TIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVE 739
F R GY QN F T+ E+L L+ E R+ E +E V
Sbjct: 72 KFRREKLGYLFQN-----FALIENETVEENLDLG--LKYKKLSKKEKREKKK-EALEKVG 123
Query: 740 LN-PLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV 798
LN L+Q + LS +++R+ +A ++ P +I DEPT LD + V+ +
Sbjct: 124 LNLKLKQK------IYELSGGEQQRVALARAILKPPPLILADEPTGSLDPKNRDEVLDLL 177
Query: 799 RNTVDTGRTVVCTIHQPSI 817
D G+T++ H P +
Sbjct: 178 LELNDEGKTIIIVTHDPEV 196
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins [Cellular processes, Toxin production and resistance, Transport and binding proteins, Unknown substrate]. Length = 206 |
| >gnl|CDD|213264 cd03297, ABC_ModC_molybdenum_transporter, ATP-binding cassette domain of the molybdenum transport system | Back alignment and domain information |
|---|
Score = 78.5 bits (194), Expect = 3e-16
Identities = 52/201 (25%), Positives = 90/201 (44%), Gaps = 23/201 (11%)
Query: 641 PGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYPKKQ---ETFARISGYCE 695
+T + G SGAGK+TL+ +AG + GG I N T+ +K+ R G
Sbjct: 22 NEEVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQRKIGLVF 81
Query: 696 QNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSG 755
Q P + + E+L F R D ++ +DE+++L+ L+ L +
Sbjct: 82 QQYALFPHLNVRENLAFGL-KRKRNRED----RISVDELLDLLGLDHLLNR-----YPAQ 131
Query: 756 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DTGRTVVCTIHQ 814
LS +++R+ +A L A P ++ +DEP S LD ++ ++ + V+ H
Sbjct: 132 LSGGEKQRVALARALAAQPELLLLDEPFSALDRALRLQLLPELKQIKKNLNIPVIFVTHD 191
Query: 815 PSIDIFEAF---DELFLMKRG 832
S EA D + +M+ G
Sbjct: 192 LS----EAEYLADRIVVMEDG 208
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 214 |
| >gnl|CDD|237421 PRK13539, PRK13539, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 78.4 bits (194), Expect = 3e-16
Identities = 60/195 (30%), Positives = 87/195 (44%), Gaps = 19/195 (9%)
Query: 630 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYPKKQETF 687
VL +G+S G L G +G+GKTTL+ ++AG G I + G
Sbjct: 16 VLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAG----TIKLDGGDIDDPDV 71
Query: 688 ARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSL 747
A Y + P +T+ E+L F A E+D I +E V L PL
Sbjct: 72 AEACHYLGHRNAMKPALTVAENLEFWAAFLGGEELD-------IAAALEAVGLAPL---- 120
Query: 748 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT 807
LP LS Q++R+ +A LV+N I +DEPT+ LDA A A+ +R + G
Sbjct: 121 AHLPF-GYLSAGQKRRVALARLLVSNRPIWILDEPTAALDAAAVALFAELIRAHLAQGGI 179
Query: 808 VVCTIHQPSIDIFEA 822
V+ H P + + A
Sbjct: 180 VIAATHIP-LGLPGA 193
|
Length = 207 |
| >gnl|CDD|226927 COG4555, NatA, ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 79.4 bits (196), Expect = 3e-16
Identities = 54/182 (29%), Positives = 89/182 (48%), Gaps = 14/182 (7%)
Query: 635 VSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP-KKQETFAR--IS 691
VS G +T L+G +GAGKTTL+ ++A +G +TI G + +F R I
Sbjct: 21 VSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPD--SGKVTIDGVDTVRDPSFVRRKIG 78
Query: 692 GYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLP 751
+ +++ +T E+L + A L + + R I E+ + ++L VG
Sbjct: 79 VLFGERGLYAR-LTARENLKYFARLNGLSRKEIKAR---IAELSKRLQLLEYLDRRVG-- 132
Query: 752 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCT 811
ST ++++ IA LV +PSI+ +DEPTSGLD R ++ + GR V+ +
Sbjct: 133 ---EFSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKNEGRAVIFS 189
Query: 812 IH 813
H
Sbjct: 190 SH 191
|
Length = 245 |
| >gnl|CDD|226359 COG3839, MalK, ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 80.8 bits (200), Expect = 4e-16
Identities = 71/274 (25%), Positives = 112/274 (40%), Gaps = 42/274 (15%)
Query: 632 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GNITISGYPKKQETFA 688
L V+ G L+G SG GK+TL+ ++AG T G I ++ P ++
Sbjct: 19 LKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEK---- 74
Query: 689 RISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLV 748
R QN P +T+YE++ F LR P+ + + R + EV +L+ L L
Sbjct: 75 RGIAMVFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKR---VKEVAKLLGLEHLLNRKP 131
Query: 749 GLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD--TGR 806
LS QR+R+ +A LV P + +DEP S LDA+ ++MR+ + G
Sbjct: 132 -----LQLSGGQRQRVALARALVRKPKVFLLDEPLSNLDAK-LRVLMRSEIKKLHERLGT 185
Query: 807 TVVCTIHQPSIDIFEA---FDELFLMKRGG-------QEIYVGPLGRHSCHL-ISYFEAI 855
T + H D EA D + +M G E+Y +L ++ F
Sbjct: 186 TTIYVTH----DQVEAMTLADRIVVMNDGRIQQVGTPLELY-----ERPANLFVAGFIGS 236
Query: 856 PGVQKIKDGYNPATWMLEVSAASQELA----LGI 885
P + +K L + + LGI
Sbjct: 237 PPMNFLKAEVKADGNGLSIPEDKKVALEQVILGI 270
|
Length = 338 |
| >gnl|CDD|224043 COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 80.9 bits (200), Expect = 5e-16
Identities = 61/219 (27%), Positives = 101/219 (46%), Gaps = 17/219 (7%)
Query: 632 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYPKKQETFAR 689
L+ +S + G L AL+G SGAGK+TL+ ++AG G I N + R
Sbjct: 18 LDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLAVRDR 77
Query: 690 ISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVG 749
G+ Q+ P +T+ +++ F +R ++E R ++E++ LV+L L
Sbjct: 78 KVGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRAR-VEELLRLVQLEGLADR--- 133
Query: 750 LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTV 808
P + LS QR+R+ +A L P ++ +DEP LDA+ + R +R D G T
Sbjct: 134 YP--AQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTT 191
Query: 809 VCTIHQPSIDIFEAFDELFLMKRGG-------QEIYVGP 840
V H + E D + ++ +G E+Y P
Sbjct: 192 VFVTHDQE-EALELADRVVVLNQGRIEQVGPPDEVYDHP 229
|
Length = 345 |
| >gnl|CDD|163585 TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 78.3 bits (193), Expect = 8e-16
Identities = 55/192 (28%), Positives = 88/192 (45%), Gaps = 21/192 (10%)
Query: 631 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GNITISGYPKKQETF 687
+++GV PG LT L+G +G+GK+TL+ +LAG R G + + + G ++
Sbjct: 16 IVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRAR-- 73
Query: 688 ARISGYCEQNDIHSPFVTIYESLLF------SAWLRLSPEVDSETRKMFIDEVMELVELN 741
AR EQ+ + +T+ + + S W SP + + EL L
Sbjct: 74 ARRVALVEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALAR--TELSHL- 130
Query: 742 PLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT 801
+S LS +R+R+ +A L P ++ +DEPT+ LD RA + VR
Sbjct: 131 -------ADRDMSTLSGGERQRVHVARALAQEPKLLLLDEPTNHLDVRAQLETLALVREL 183
Query: 802 VDTGRTVVCTIH 813
TG TVV +H
Sbjct: 184 AATGVTVVAALH 195
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. Length = 256 |
| >gnl|CDD|237420 PRK13537, PRK13537, nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Score = 79.1 bits (195), Expect = 9e-16
Identities = 62/190 (32%), Positives = 96/190 (50%), Gaps = 15/190 (7%)
Query: 627 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQET 686
DKLV+ +G+S + G L+G +GAGKTT + +L G G+I++ G P
Sbjct: 19 DKLVV-DGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPD--AGSISLCGEPVPSRA 75
Query: 687 -FARIS-GYCEQNDIHSPFVTIYESLL-FSAWLRLSPEVDSETRKMFIDEVMELVELNPL 743
AR G Q D P T+ E+LL F + LS + R + V L+E L
Sbjct: 76 RHARQRVGVVPQFDNLDPDFTVRENLLVFGRYFGLSA---AAARAL----VPPLLEFAKL 128
Query: 744 RQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD 803
V LS ++RLT+A LV +P ++ +DEPT+GLD +A ++ +R+ +
Sbjct: 129 ENK--ADAKVGELSGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLA 186
Query: 804 TGRTVVCTIH 813
G+T++ T H
Sbjct: 187 RGKTILLTTH 196
|
Length = 306 |
| >gnl|CDD|223488 COG0411, LivG, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 78.0 bits (193), Expect = 1e-15
Identities = 54/203 (26%), Positives = 82/203 (40%), Gaps = 37/203 (18%)
Query: 629 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GNITISGYPKKQ- 684
L +N VS RPG + L+G +GAGKTTL +++ G + + G + I+G P +
Sbjct: 17 LTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHRI 76
Query: 685 ------ETFARISGYCEQNDIHSPFVTIYESLL--------FSAWLRLSPEVDSETRKMF 730
TF Q P +T+ E++ S L E
Sbjct: 77 ARLGIARTF--------QITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREAR- 127
Query: 731 IDEVMEL---VELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 787
+ EL V L L G LS Q++RL IA L P ++ +DEP +GL+
Sbjct: 128 -ERARELLEFVGLGELADRPAG-----NLSYGQQRRLEIARALATQPKLLLLDEPAAGLN 181
Query: 788 ARAAAIVMRTVRNTVDT-GRTVV 809
+ +R D G T++
Sbjct: 182 PEETEELAELIRELRDRGGVTIL 204
|
Length = 250 |
| >gnl|CDD|237419 PRK13536, PRK13536, nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Score = 79.5 bits (196), Expect = 1e-15
Identities = 71/240 (29%), Positives = 115/240 (47%), Gaps = 35/240 (14%)
Query: 578 QSLSLAEAEASRPKKKGMVLPFEPHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSG 637
+ ++EA+AS P V ++D+ K G DK V+ NG+S
Sbjct: 22 KHQGISEAKASIPGSMSTV---------------AIDLAGVSKSYG---DKAVV-NGLSF 62
Query: 638 AFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP-KKQETFARIS-GYCE 695
G L+G +GAGK+T+ ++ G + G IT+ G P + AR G
Sbjct: 63 TVASGECFGLLGPNGAGKSTIARMILGMTSPD--AGKITVLGVPVPARARLARARIGVVP 120
Query: 696 QNDIHSPFVTIYESLL-FSAWLRLSPEVDSETRKMFIDEVM-ELVELNPLRQSLVGLPGV 753
Q D T+ E+LL F + +S TR+ I+ V+ L+E L +S V
Sbjct: 121 QFDNLDLEFTVRENLLVFGRYFGMS------TRE--IEAVIPSLLEFARL-ESKADAR-V 170
Query: 754 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIH 813
S LS ++RLT+A L+ +P ++ +DEPT+GLD A ++ +R+ + G+T++ T H
Sbjct: 171 SDLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTH 230
|
Length = 340 |
| >gnl|CDD|226929 COG4559, COG4559, ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 77.4 bits (191), Expect = 2e-15
Identities = 55/213 (25%), Positives = 97/213 (45%), Gaps = 22/213 (10%)
Query: 631 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GNITISGYPKKQETF 687
LL+GVS RPG + A++G +GAGK+TL+ L+G G +T + ++ +P ++
Sbjct: 16 LLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEE--L 73
Query: 688 ARISGYCEQNDIHS-PFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQS 746
AR QN + PF T+ E + S E ++ + + +L+ L
Sbjct: 74 ARHRAVLPQNSSLAFPF-TVQEVVQMGRIPHRSGREPEEDERI-AAQALAATDLSGLAGR 131
Query: 747 LVGLPGVSGLSTEQRKRLTIAVEL------VANPSIIFMDEPTSGLDARAAAIVMRTVRN 800
LS +++R+ +A L V + +F+DEPTS LD +R R
Sbjct: 132 D-----YRTLSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQ 186
Query: 801 TVDTGRTVVCTIHQPSIDIFEAF-DELFLMKRG 832
G V+ +H +++ + D + L+ +G
Sbjct: 187 LAREGGAVLAVLH--DLNLAAQYADRIVLLHQG 217
|
Length = 259 |
| >gnl|CDD|226617 COG4133, CcmA, ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 75.8 bits (187), Expect = 3e-15
Identities = 50/191 (26%), Positives = 80/191 (41%), Gaps = 15/191 (7%)
Query: 627 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYPKKQ 684
+ L + +S G + G +GAGKTTL+ +LAG R G + +
Sbjct: 13 GERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEV--YWQGEPIQNVR 70
Query: 685 ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLR 744
E++ + Y +T E+L F W R ++ T I E + V L L
Sbjct: 71 ESYHQALLYLGHQPGIKTELTALENLHF--WQRFHGSGNAAT----IWEALAQVGLAGLE 124
Query: 745 QSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT 804
LP V LS Q++R+ +A ++ + +DEP + LD A++ +
Sbjct: 125 D----LP-VGQLSAGQQRRVALARLWLSPAPLWILDEPFTALDKEGVALLTALMAAHAAQ 179
Query: 805 GRTVVCTIHQP 815
G V+ T HQP
Sbjct: 180 GGIVLLTTHQP 190
|
Length = 209 |
| >gnl|CDD|213227 cd03260, ABC_PstB_phosphate_transporter, ATP-binding cassette domain of the phosphate transport system | Back alignment and domain information |
|---|
Score = 75.7 bits (187), Expect = 4e-15
Identities = 47/181 (25%), Positives = 74/181 (40%), Gaps = 34/181 (18%)
Query: 632 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG---RKTGGYITGNITISGYPKKQETFA 688
L +S G +TAL+G SG GK+TL+ +L G G + + G
Sbjct: 16 LKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVD 75
Query: 689 RIS-----GYCEQNDIHSPFV-TIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP 742
+ G Q +PF +IY+++ + L K +DE +E
Sbjct: 76 VLELRRRVGMVFQKP--NPFPGSIYDNVAYGLRLHG------IKLKEELDERVE------ 121
Query: 743 LRQSL--VGLPG-------VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAI 793
++L L GLS Q++RL +A L P ++ +DEPTS LD + A
Sbjct: 122 --EALRKAALWDEVKDRLHALGLSGGQQQRLCLARALANEPEVLLLDEPTSALDPISTAK 179
Query: 794 V 794
+
Sbjct: 180 I 180
|
Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). Length = 227 |
| >gnl|CDD|213236 cd03269, ABC_putative_ATPase, ATP-binding cassette domain of an uncharacterized transporter | Back alignment and domain information |
|---|
Score = 75.0 bits (185), Expect = 5e-15
Identities = 56/212 (26%), Positives = 101/212 (47%), Gaps = 24/212 (11%)
Query: 632 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYI----TGNITISGYPKKQETF 687
L+ +S + G + L+G +GAGKTT + ++ G I +G + G P
Sbjct: 16 LDDISFSVEKGEIFGLLGPNGAGKTTTIRMILG------IILPDSGEVLFDGKPLDIAAR 69
Query: 688 ARISGYCEQNDIHSPFVTIYESLLFSAWLR-LSPEVDSETRKMFIDEVMELVELNPLRQS 746
RI GY + P + + + L++ A L+ L E E R+ IDE +E +EL+
Sbjct: 70 NRI-GYLPEERGLYPKMKVIDQLVYLAQLKGLKKE---EARRR-IDEWLERLELSEYANK 124
Query: 747 LVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGR 806
V LS ++++ ++ +P ++ +DEP SGLD ++ +R G+
Sbjct: 125 -----RVEELSKGNQQKVQFIAAVIHDPELLILDEPFSGLDPVNVELLKDVIRELARAGK 179
Query: 807 TVVCTIHQPSIDIFEAF-DELFLMKRGGQEIY 837
TV+ + HQ +++ E D + L+ +G +Y
Sbjct: 180 TVILSTHQ--MELVEELCDRVLLLNKGRAVLY 209
|
This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 210 |
| >gnl|CDD|213185 cd03218, ABC_YhbG, ATP-binding cassette component of YhbG transport system | Back alignment and domain information |
|---|
Score = 75.7 bits (187), Expect = 5e-15
Identities = 57/188 (30%), Positives = 95/188 (50%), Gaps = 18/188 (9%)
Query: 632 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GNITISGYPKKQETFA 688
+NGVS + + G + L+G +GAGKTT ++ G + G I I+ P + A
Sbjct: 16 VNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKR--A 73
Query: 689 RIS-GYCEQNDIHSPF--VTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQ 745
R+ GY Q S F +T+ E++L A L + + + R+ ++E++E + LR+
Sbjct: 74 RLGIGYLPQE--ASIFRKLTVEENIL--AVLEIR-GLSKKEREEKLEELLEEFHITHLRK 128
Query: 746 SLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTG 805
S S LS +R+R+ IA L NP + +DEP +G+D A + + ++ D G
Sbjct: 129 SKA-----SSLSGGERRRVEIARALATNPKFLLLDEPFAGVDPIAVQDIQKIIKILKDRG 183
Query: 806 RTVVCTIH 813
V+ T H
Sbjct: 184 IGVLITDH 191
|
The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. Length = 232 |
| >gnl|CDD|213224 cd03257, ABC_NikE_OppD_transporters, ATP-binding cassette domain of nickel/oligopeptides specific transporters | Back alignment and domain information |
|---|
Score = 75.2 bits (186), Expect = 6e-15
Identities = 47/175 (26%), Positives = 77/175 (44%), Gaps = 11/175 (6%)
Query: 632 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT--GNITISGYPKKQETF 687
L+ VS + + G L+G SG+GK+TL + G + T G I G + + ++
Sbjct: 21 LDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKIR 80
Query: 688 ARISGYCEQNDIHS--PFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQ 745
+ Q+ + S P +TI E + + E RK + ++ V L
Sbjct: 81 RKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIH-GKLSKKEARKEAVLLLLVGVGLPEEVL 139
Query: 746 SLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN 800
+ P LS QR+R+ IA L NP ++ DEPTS LD A ++ ++
Sbjct: 140 NR--YP--HELSGGQRQRVAIARALALNPKLLIADEPTSALDVSVQAQILDLLKK 190
|
The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. Length = 228 |
| >gnl|CDD|213213 cd03246, ABCC_Protease_Secretion, ATP-binding cassette domain of PrtD, subfamily C | Back alignment and domain information |
|---|
Score = 73.8 bits (182), Expect = 6e-15
Identities = 50/209 (23%), Positives = 77/209 (36%), Gaps = 57/209 (27%)
Query: 631 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYPKKQ---E 685
+L VS + PG A++G SG+GK+TL ++ G R T G + + G Q
Sbjct: 17 VLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSG----RVRLDGADISQWDPN 72
Query: 686 TFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQ 745
GY Q+D LFS + E +
Sbjct: 73 ELGDHVGYLPQDDE-----------LFS------------------GSIAENI------- 96
Query: 746 SLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTG 805
LS QR+RL +A L NP I+ +DEP S LD + + + G
Sbjct: 97 ----------LSGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAG 146
Query: 806 RTVVCTIHQPSIDIFEAFDELFLMKRGGQ 834
T + H+P + D + +++ G
Sbjct: 147 ATRIVIAHRPE--TLASADRILVLEDGRV 173
|
This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA. Length = 173 |
| >gnl|CDD|213263 cd03296, ABC_CysA_sulfate_importer, ATP-binding cassette domain of the sulfate transporter | Back alignment and domain information |
|---|
Score = 75.1 bits (185), Expect = 9e-15
Identities = 62/221 (28%), Positives = 103/221 (46%), Gaps = 22/221 (9%)
Query: 632 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GNITISGYPKKQETFA 688
L+ VS G L AL+G SG+GKTTL+ ++AG R G I G + P ++
Sbjct: 18 LDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPVQE---- 73
Query: 689 RISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETR-KMFIDEVMELVELNPLRQSL 747
R G+ Q+ +T+++++ F ++ E E + + E+++LV+L+ L
Sbjct: 74 RNVGFVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADR- 132
Query: 748 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGR 806
P + LS QR+R+ +A L P ++ +DEP LDA+ + R +R D
Sbjct: 133 --YP--AQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHV 188
Query: 807 TVVCTIHQPSIDIFEAFDELFLMKRG-------GQEIYVGP 840
T V H + E D + +M +G E+Y P
Sbjct: 189 TTVFVTHDQE-EALEVADRVVVMNKGRIEQVGTPDEVYDHP 228
|
Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 239 |
| >gnl|CDD|224041 COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 74.9 bits (185), Expect = 1e-14
Identities = 54/216 (25%), Positives = 93/216 (43%), Gaps = 24/216 (11%)
Query: 627 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYPKKQ 684
+ +L ++ + G A++G SG GK+TL+ ++AG + T G + + G P
Sbjct: 14 GGVEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSG----EVLLDGRPVTG 69
Query: 685 ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLR 744
GY Q D P++T+ +++ LR + ++ R E++ELV L
Sbjct: 70 PGPDI--GYVFQEDALLPWLTVLDNVALGLELRGKSKAEARER---AKELLELVGLAGFE 124
Query: 745 QSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-D 803
P LS R+R+ IA L P ++ +DEP LDA + + +
Sbjct: 125 DKY---PHQ--LSGGMRQRVAIARALATRPKLLLLDEPFGALDALTREELQDELLRLWEE 179
Query: 804 TGRTVVCTIHQPSIDIFEAF---DELFLMKRGGQEI 836
T +TV+ H D+ EA D + ++ I
Sbjct: 180 TRKTVLLVTH----DVDEAVYLADRVVVLSNRPGRI 211
|
Length = 248 |
| >gnl|CDD|224054 COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 74.7 bits (184), Expect = 2e-14
Identities = 42/164 (25%), Positives = 81/164 (49%), Gaps = 12/164 (7%)
Query: 40 GQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEIS 99
+EA + L++ GL+ ++ +R +SGG K+R++ ++ L +DE +
Sbjct: 110 KEEAEERIEELLELFGLE-----DKANKKVRTLSGGMKQRLSIALALLHDPELLILDEPT 164
Query: 100 TGLDSSTTFQIVNCLRQNIHINSGTAVIS--LLQPAPETYDLFDDIILLSDGQIVYQGPR 157
+GLD + +I LR+ T ++S +L+ E +L D +I+L+DG+I+ +G
Sbjct: 165 SGLDPESRREIWELLRELAKEGGVTILLSTHILE---EAEELCDRVIILNDGKIIAEGTP 221
Query: 158 ELVLEFFASMGFRC--PKRKGVADFLQEVTSRKDQRQYWAHKEK 199
E + E F G P+R +A+ L+ + K + + E
Sbjct: 222 EELKEKFGGKGVIELEPERLELAELLEGLKLVKGEEELAEILEA 265
|
Length = 293 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 77.6 bits (192), Expect = 2e-14
Identities = 51/170 (30%), Positives = 76/170 (44%), Gaps = 11/170 (6%)
Query: 632 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GNITISGYPKKQETFA 688
++ VS R G L+G SG+GK+TL +LAG + G I + +
Sbjct: 307 VDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLDLTGGELRRLR 366
Query: 689 RISGYCEQNDIHS--PFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQS 746
R Q+ S P +T+ + L LR+ R+ + E++ELV L P +
Sbjct: 367 RRIQMVFQDPYSSLNPRMTVGDILAEP--LRIHGGGSGAERRARVAELLELVGLPP--EF 422
Query: 747 LVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR 796
L P LS QR+R+ IA L P ++ +DEP S LD A V+
Sbjct: 423 LDRYPH--ELSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLN 470
|
Length = 539 |
| >gnl|CDD|237422 PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 73.7 bits (182), Expect = 3e-14
Identities = 55/203 (27%), Positives = 83/203 (40%), Gaps = 40/203 (19%)
Query: 631 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIT---GNITISGYPKKQ--- 684
LL+ VS RPG + A++G +GAGK+TL+ L+ G ++ G + ++G P
Sbjct: 17 LLDDVSLTLRPGEVVAILGPNGAGKSTLLRALS-----GELSPDSGEVRLNGRPLADWSP 71
Query: 685 ETFARISGYCEQNDIHSPFVTIYESLLFS------AWLRLSPEVDSETR-KMFIDEVMEL 737
AR Q HS SL F + +P S + +
Sbjct: 72 AELARRRAVLPQ---HS-------SLSFPFTVEEVVAMGRAPHGLSRAEDDALVAAALAQ 121
Query: 738 VELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELV------ANPSIIFMDEPTSGLDARAA 791
V+L L P +SG EQ +R+ +A L P + +DEPTS LD
Sbjct: 122 VDLAHLAGRD--YPQLSG--GEQ-QRVQLARVLAQLWEPDGPPRWLLLDEPTSALDLAHQ 176
Query: 792 AIVMRTVRN-TVDTGRTVVCTIH 813
V+R R + G V+ +H
Sbjct: 177 HHVLRLARQLAHERGLAVIVVLH 199
|
Length = 258 |
| >gnl|CDD|213221 cd03254, ABCC_Glucan_exporter_like, ATP-binding cassette domain of glucan transporter and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 72.6 bits (179), Expect = 4e-14
Identities = 50/214 (23%), Positives = 90/214 (42%), Gaps = 32/214 (14%)
Query: 632 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GNITISGYPKKQETFA 688
L ++ + +PG A++G +GAGKTTL+++L G I I I +K +
Sbjct: 19 LKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRK--SLR 76
Query: 689 RISGYCEQNDIHSPFV---TIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQ 745
+ G Q F+ TI E++ R + + + E + +
Sbjct: 77 SMIGVVLQ----DTFLFSGTIMENIRLG---RPNATDEE------VIEAAKEAGAHDFIM 123
Query: 746 SL-------VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV 798
L +G LS +R+ L IA ++ +P I+ +DE TS +D ++ +
Sbjct: 124 KLPNGYDTVLG-ENGGNLSQGERQLLAIARAMLRDPKILILDEATSNIDTETEKLIQEAL 182
Query: 799 RNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 832
+ GRT + H+ S I A D++ ++ G
Sbjct: 183 EKLMK-GRTSIIIAHRLST-IKNA-DKILVLDDG 213
|
Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 229 |
| >gnl|CDD|227019 COG4674, COG4674, Uncharacterized ABC-type transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 72.8 bits (179), Expect = 5e-14
Identities = 52/167 (31%), Positives = 83/167 (49%), Gaps = 21/167 (12%)
Query: 632 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGG--YITGNITISGYPKKQETF 687
LN +S + PG L L+G +GAGKTTLMDV+ G R G G+ ++ P+ +
Sbjct: 21 LNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLPEHR--I 78
Query: 688 ARISGYCEQNDIHSPF--VTIYESLLF------SAWLRLSPEVDSETRKMFIDEVMELVE 739
AR G + + F +T+ E+L S + L + +E R+ IDE++ +
Sbjct: 79 ARA-GIGRKFQKPTVFENLTVRENLELALNRDKSVFASLFARLRAEERRR-IDELLATIG 136
Query: 740 LNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 786
L R L L LS Q++ L I + L +P ++ +DEP +G+
Sbjct: 137 LGDERDRLAAL-----LSHGQKQWLEIGMLLAQDPKLLLLDEPVAGM 178
|
Length = 249 |
| >gnl|CDD|226631 COG4152, COG4152, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 73.9 bits (182), Expect = 5e-14
Identities = 61/246 (24%), Positives = 112/246 (45%), Gaps = 31/246 (12%)
Query: 632 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARIS 691
++ +S PG + L+G +GAGKTT ++ G G IT +G P QE RI
Sbjct: 18 VDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLE--PTEGEITWNGGPLSQEIKNRI- 74
Query: 692 GYC-EQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGL 750
GY E+ ++ P +T+ + L + A L+ P+ + + + + +E R +VG
Sbjct: 75 GYLPEERGLY-PKMTVEDQLKYLAELKGMPKAEIQKK---LQAWLE-------RLEIVGK 123
Query: 751 PG--VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTV 808
+ LS ++++ ++ P ++ +DEP SGLD ++ + + G T+
Sbjct: 124 KTKKIKELSKGNQQKIQFISAVIHEPELLILDEPFSGLDPVNVELLKDAIFELKEEGATI 183
Query: 809 VCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPL-------GR-----HSCHLISYFEAIP 856
+ + H+ + E D L ++K+ GQ + G + G+ S + IP
Sbjct: 184 IFSSHRME-HVEELCDRLLMLKK-GQTVLYGTVEDIRRSFGKKRLVIESDLSLEELANIP 241
Query: 857 GVQKIK 862
G+ KI
Sbjct: 242 GILKIT 247
|
Length = 300 |
| >gnl|CDD|182817 PRK10895, PRK10895, lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 72.6 bits (178), Expect = 6e-14
Identities = 59/192 (30%), Positives = 97/192 (50%), Gaps = 13/192 (6%)
Query: 635 VSGAFRPGVLTALMGVSGAGKTTLMDVLAG---RKTGGYITGNITISGYPKKQETFARIS 691
VS G + L+G +GAGKTT ++ G R G I + IS P I
Sbjct: 22 VSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRGI- 80
Query: 692 GYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLP 751
GY Q +++Y++L+ A L++ ++ +E R+ +E+ME + LR S+
Sbjct: 81 GYLPQEASIFRRLSVYDNLM--AVLQIRDDLSAEQREDRANELMEEFHIEHLRDSM---- 134
Query: 752 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCT 811
G S LS +R+R+ IA L ANP I +DEP +G+D + + R + + D+G V+ T
Sbjct: 135 GQS-LSGGERRRVEIARALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLIT 193
Query: 812 IH--QPSIDIFE 821
H + ++ + E
Sbjct: 194 DHNVRETLAVCE 205
|
Length = 241 |
| >gnl|CDD|223473 COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 72.6 bits (179), Expect = 6e-14
Identities = 57/219 (26%), Positives = 84/219 (38%), Gaps = 53/219 (24%)
Query: 626 EDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGY-IT-GNITISG---- 679
E K +L GV+ + G + A+MG +G+GK+TL + G Y +T G I G
Sbjct: 14 EGKKEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHP--KYEVTEGEILFDGEDIL 71
Query: 680 -----------------YPKKQETFARISGYCEQNDIHSPFVTIYESLLFSAW--LRLSP 720
YP I G VT L +A R +
Sbjct: 72 ELSPDERARAGIFLAFQYP------VEIPG-----------VTN-SDFLRAAMNARRGAR 113
Query: 721 EVDSETRKMFIDEVMELVELNP--LRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIF 778
+ E K + E EL+ L+ L + + G S ++KR I L+ P +
Sbjct: 114 GILPEFIK-ELKEKAELLGLDEEFLERYV----NE-GFSGGEKKRNEILQLLLLEPKLAI 167
Query: 779 MDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSI 817
+DEP SGLD A IV + + GR V+ H +
Sbjct: 168 LDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQRL 206
|
Length = 251 |
| >gnl|CDD|224052 COG1127, Ttg2A, ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 72.6 bits (179), Expect = 8e-14
Identities = 64/217 (29%), Positives = 101/217 (46%), Gaps = 31/217 (14%)
Query: 615 MPEEMKVQ--GV---LEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKT 667
E ++ GV D+++L +GV G + A++G SG+GK+TL+ ++ G R
Sbjct: 3 ASPEPLIEVRGVTKSFGDRVIL-DGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPD 61
Query: 668 GGYI---TGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDS 724
G I +I + E R+ G Q +T++E++ F LR
Sbjct: 62 KGEILIDGEDIPQLSEEELYEIRKRM-GVLFQQGALFSSLTVFENVAFP--LR------- 111
Query: 725 ETRKMFIDEVMELVELNPLRQSLVGLPGV------SGLSTEQRKRLTIAVELVANPSIIF 778
E K+ + ELV + LVGL G S LS RKR+ +A + +P ++F
Sbjct: 112 EHTKLPESLIRELVLMK---LELVGLRGAAADLYPSELSGGMRKRVALARAIALDPELLF 168
Query: 779 MDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQ 814
+DEPTSGLD +A ++ +R D G TV+ H
Sbjct: 169 LDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHD 205
|
Length = 263 |
| >gnl|CDD|130355 TIGR01288, nodI, ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Score = 73.4 bits (180), Expect = 9e-14
Identities = 56/187 (29%), Positives = 97/187 (51%), Gaps = 14/187 (7%)
Query: 630 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK-KQETFA 688
V++N +S G L+G +GAGK+T+ +L G + G IT+ G P + A
Sbjct: 18 VVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPD--RGKITVLGEPVPSRARLA 75
Query: 689 RIS-GYCEQNDIHSPFVTIYESLL-FSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQS 746
R++ G Q D P T+ E+LL F + +S + + I ++E L +S
Sbjct: 76 RVAIGVVPQFDNLDPEFTVRENLLVFGRYFGMS----TREIEAVIPSLLEFARL----ES 127
Query: 747 LVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGR 806
+ V+ LS ++RLT+A L+ +P ++ +DEPT+GLD A ++ +R+ + G+
Sbjct: 128 KADVR-VALLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGK 186
Query: 807 TVVCTIH 813
T++ T H
Sbjct: 187 TILLTTH 193
|
This protein is required for normal nodulation by nitrogen-fixing root nodule bacteria such as Mesorhizobium loti. It is a member of the family of ABC transporter ATP binding proteins and works with NodJ to export a nodulation signal molecule. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans [Cellular processes, Other, Transport and binding proteins, Other]. Length = 303 |
| >gnl|CDD|226963 COG4604, CeuD, ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 72.3 bits (178), Expect = 9e-14
Identities = 59/211 (27%), Positives = 103/211 (48%), Gaps = 21/211 (9%)
Query: 630 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP----KKQE 685
V+L+ VS G +T+++G +GAGK+TL+ + R +G ITI G +E
Sbjct: 15 VVLDDVSLDIPKGGITSIIGPNGAGKSTLLS-MMSRLLK-KDSGEITIDGLELTSTPSKE 72
Query: 686 TFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQ 745
++S ++N I+S T+ + + F + + E R++ I+E +E + L L
Sbjct: 73 LAKKLSILKQENHINSRL-TVRDLVGFGRFPYSQGRLTKEDRRI-INEAIEYLHLEDLSD 130
Query: 746 SLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT- 804
+ LS QR+R IA+ L + + +DEP + LD + + +M+ +R D
Sbjct: 131 RYL-----DELSGGQRQRAFIAMVLAQDTDYVLLDEPLNNLDMKHSVQIMKILRRLADEL 185
Query: 805 GRTVVCTIHQPSIDIFEA---FDELFLMKRG 832
G+T+V +H DI A D + +K G
Sbjct: 186 GKTIVVVLH----DINFASCYSDHIVALKNG 212
|
Length = 252 |
| >gnl|CDD|224049 COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 71.9 bits (177), Expect = 1e-13
Identities = 51/179 (28%), Positives = 76/179 (42%), Gaps = 25/179 (13%)
Query: 620 KVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITI 677
V G + LN VS G ++G SG+GK+TL +LAG + + +G+I +
Sbjct: 11 IVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPS----SGSILL 66
Query: 678 SG--YPKKQET--FARISGYCEQNDIHS--PFVTIYESLLFSAWLRLSPEVDSETRKMFI 731
G K+ F R Q+ S P T+ L + I
Sbjct: 67 DGKPLAPKKRAKAFYRPVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKSQQR-----I 121
Query: 732 DEVMELVELNP--LRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 788
E+++ V L P L + L G G QR+R+ IA L+ P ++ +DEPTS LD
Sbjct: 122 AELLDQVGLPPSFLDRRPHELSG--G----QRQRIAIARALIPEPKLLILDEPTSALDV 174
|
Length = 252 |
| >gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 74.5 bits (184), Expect = 1e-13
Identities = 53/217 (24%), Positives = 92/217 (42%), Gaps = 35/217 (16%)
Query: 632 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYPKKQETFAR 689
L+GVS RPG + AL+G +GAGK+TLM +L+G G I I G P
Sbjct: 24 LDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDS----GEILIDGKP------VA 73
Query: 690 ISGYCEQND-----IH-----SPFVTIYESLLFSAWL-RLSPEVDSETRKMFID--EVME 736
S + +H P +++ E++ R +D + M E++
Sbjct: 74 FSSPRDALAAGIATVHQELSLVPNLSVAENIFLGREPTRRFGLID--RKAMRRRARELLA 131
Query: 737 LVELN-PLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM 795
+ L+ V LS QR+ + IA L + ++ +DEPT+ L + +
Sbjct: 132 RLGLDIDPDTL------VGDLSIAQRQMVEIARALSFDARVLILDEPTAALTVKETERLF 185
Query: 796 RTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 832
+R G ++ H+ ++FE D + +++ G
Sbjct: 186 DLIRRLKAQGVAIIYISHRLD-EVFEIADRITVLRDG 221
|
Length = 500 |
| >gnl|CDD|233305 TIGR01189, ccmA, heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Score = 70.5 bits (173), Expect = 1e-13
Identities = 47/191 (24%), Positives = 79/191 (41%), Gaps = 16/191 (8%)
Query: 627 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYPKKQ 684
+ +L G+S G + G +G GKTTL+ +LAG R G + N T +++
Sbjct: 11 GERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTAL--AEQR 68
Query: 685 ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLR 744
+ R Y P ++ E+L F W + I++ + V L
Sbjct: 69 DEPHRNILYLGHLPGLKPELSALENLHF--WAA-----IHGGAQRTIEDALAAVGLTGFE 121
Query: 745 QSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT 804
LS Q++RL +A ++ + +DEPT+ LD A++ +R +
Sbjct: 122 DLPAAQ-----LSAGQQRRLALARLWLSRAPLWILDEPTTALDKAGVALLAGLLRAHLAR 176
Query: 805 GRTVVCTIHQP 815
G V+ T HQ
Sbjct: 177 GGIVLLTTHQD 187
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Other]. Length = 198 |
| >gnl|CDD|213199 cd03232, ABCG_PDR_domain2, Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 69.6 bits (171), Expect = 2e-13
Identities = 32/89 (35%), Positives = 54/89 (60%), Gaps = 4/89 (4%)
Query: 69 IRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVI- 127
+RG+S Q+KR+T G + LF+DE ++GLDS + IV L+ + +SG A++
Sbjct: 106 LRGLSVEQRKRLTIGVELAAKPSILFLDEPTSGLDSQAAYNIVRFLK-KL-ADSGQAILC 163
Query: 128 SLLQPAPETYDLFDDIILL-SDGQIVYQG 155
++ QP+ ++ FD ++LL G+ VY G
Sbjct: 164 TIHQPSASIFEKFDRLLLLKRGGKTVYFG 192
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 192 |
| >gnl|CDD|213191 cd03224, ABC_TM1139_LivF_branched, ATP-binding cassette domain of branched-chain amino acid transporter | Back alignment and domain information |
|---|
Score = 70.5 bits (174), Expect = 2e-13
Identities = 53/187 (28%), Positives = 83/187 (44%), Gaps = 25/187 (13%)
Query: 632 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT---GNITISGYPKKQET 686
L GVS G + AL+G +GAGKTTL+ + G G I +IT
Sbjct: 16 LFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDIT------GLPP 69
Query: 687 FARIS---GYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELV-ELNP 742
R GY + P +T+ E+LL A+ R + + ++ V EL L
Sbjct: 70 HERARAGIGYVPEGRRIFPELTVEENLLLGAYARRRAKRKAR-----LERVYELFPRLKE 124
Query: 743 LRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV 802
R+ L G LS +++ L IA L++ P ++ +DEP+ GL + + +R
Sbjct: 125 RRKQLAGT-----LSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIRELR 179
Query: 803 DTGRTVV 809
D G T++
Sbjct: 180 DEGVTIL 186
|
LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. Length = 222 |
| >gnl|CDD|184196 PRK13636, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 71.4 bits (175), Expect = 3e-13
Identities = 61/207 (29%), Positives = 101/207 (48%), Gaps = 16/207 (7%)
Query: 632 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYPKKQETFAR 689
L G++ + G +TA++G +GAGK+TL L G + + G I + Y +K R
Sbjct: 22 LKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLR 81
Query: 690 IS-GYCEQNDIHSPF-VTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSL 747
S G Q+ + F ++Y+ + F A PE + R +D ++ + L+
Sbjct: 82 ESVGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKR---VDNALKRTGIEHLKDK- 137
Query: 748 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DTGR 806
P LS Q+KR+ IA LV P ++ +DEPT+GLD + +M+ + + G
Sbjct: 138 ---P-THCLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGL 193
Query: 807 TVVCTIHQPSIDIFEAF-DELFLMKRG 832
T++ H IDI + D +F+MK G
Sbjct: 194 TIIIATH--DIDIVPLYCDNVFVMKEG 218
|
Length = 283 |
| >gnl|CDD|213219 cd03252, ABCC_Hemolysin, ATP-binding cassette domain of hemolysin B, subfamily C | Back alignment and domain information |
|---|
Score = 70.2 bits (172), Expect = 4e-13
Identities = 57/205 (27%), Positives = 93/205 (45%), Gaps = 34/205 (16%)
Query: 627 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYI--TGNITISGYP--- 681
D V+L+ +S +PG + ++G SG+GK+TL ++ Y+ G + + G+
Sbjct: 13 DGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRF----YVPENGRVLVDGHDLAL 68
Query: 682 KKQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVME----- 736
R G Q E++LF+ +R + M ++ V+E
Sbjct: 69 ADPAWLRRQVGVVLQ-----------ENVLFNRSIR--DNIALADPGMSMERVIEAAKLA 115
Query: 737 -----LVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA 791
+ EL ++VG G GLS QR+R+ IA L+ NP I+ DE TS LD +
Sbjct: 116 GAHDFISELPEGYDTIVGEQGA-GLSGGQRQRIAIARALIHNPRILIFDEATSALDYESE 174
Query: 792 AIVMRTVRNTVDTGRTVVCTIHQPS 816
+MR + + GRTV+ H+ S
Sbjct: 175 HAIMRNMHDICA-GRTVIIIAHRLS 198
|
The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. Length = 237 |
| >gnl|CDD|130041 TIGR00968, 3a0106s01, sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 69.8 bits (171), Expect = 5e-13
Identities = 58/218 (26%), Positives = 99/218 (45%), Gaps = 20/218 (9%)
Query: 632 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFA-RI 690
L+ V+ G L AL+G SG+GK+TL+ ++AG + +G I ++G + R
Sbjct: 16 LDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPD--SGRIRLNGQDATRVHARDRK 73
Query: 691 SGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGL 750
G+ Q+ +T+ +++ F +R + K ++E++ELV+L L
Sbjct: 74 IGFVFQHYALFKHLTVRDNIAFGLEIR---KHPKAKIKARVEELLELVQLEGLGDR---Y 127
Query: 751 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGR-TVV 809
P + LS QR+R+ +A L P ++ +DEP LDA+ + +R D T V
Sbjct: 128 P--NQLSGGQRQRVALARALAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTV 185
Query: 810 CTIHQPSIDIFEAFDELFLMKRG-------GQEIYVGP 840
H + E D + +M G E+Y P
Sbjct: 186 FVTHDQE-EAMEVADRIVVMSNGKIEQIGSPDEVYDHP 222
|
[Transport and binding proteins, Anions]. Length = 237 |
| >gnl|CDD|234200 TIGR03411, urea_trans_UrtD, urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Score = 69.1 bits (170), Expect = 8e-13
Identities = 54/174 (31%), Positives = 85/174 (48%), Gaps = 36/174 (20%)
Query: 632 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GNITISGYPKKQETFA 688
LN +S PG L ++G +GAGKTT+MDV+ G R G + G ++G P+ Q A
Sbjct: 18 LNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQ--IA 75
Query: 689 RISGYCEQNDIHSPFVTIYESL---------------LFSAWL-RLSPEVDSETRKMFID 732
R +G + P T++E+L +F++ RLS E I+
Sbjct: 76 R-AGIGRK--FQKP--TVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDR-----IE 125
Query: 733 EVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 786
EV+E + L L GL LS Q++ L I + L+ +P ++ +DEP +G+
Sbjct: 126 EVLETIGLADEADRLAGL-----LSHGQKQWLEIGMLLMQDPKLLLLDEPVAGM 174
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 242 |
| >gnl|CDD|224060 COG1137, YhbG, ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 68.8 bits (169), Expect = 1e-12
Identities = 61/190 (32%), Positives = 94/190 (49%), Gaps = 20/190 (10%)
Query: 632 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GNITISGYPKKQETFA 688
+N VS G + L+G +GAGKTT ++ G R G I + I+ P + A
Sbjct: 20 VNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHKR--A 77
Query: 689 RIS-GYCEQNDIHSPF--VTIYESLLFSAWLRLSPEVDSET--RKMFIDEVMELVELNPL 743
R+ GY Q S F +T+ ++++ A L + E D + RK +D ++E + L
Sbjct: 78 RLGIGYLPQE--ASIFRKLTVEDNIM--AVLEIR-EKDLKKAERKEELDALLEEFHITHL 132
Query: 744 RQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD 803
R S S LS +R+R+ IA L ANP I +DEP +G+D A + R +++ D
Sbjct: 133 RDS----KAYS-LSGGERRRVEIARALAANPKFILLDEPFAGVDPIAVIDIQRIIKHLKD 187
Query: 804 TGRTVVCTIH 813
G V+ T H
Sbjct: 188 RGIGVLITDH 197
|
Length = 243 |
| >gnl|CDD|226905 COG4525, TauB, ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 69.0 bits (169), Expect = 1e-12
Identities = 45/159 (28%), Positives = 75/159 (47%), Gaps = 14/159 (8%)
Query: 631 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARI 690
L VS G L ++G SG GKTTL++++AG T G+I ++G + R
Sbjct: 20 ALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVT--PSRGSIQLNGRRIEGPGAER- 76
Query: 691 SGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPL-RQSLVG 749
G QN+ P++ + +++ F LR ++ R+ +++ LV L + +
Sbjct: 77 -GVVFQNEALLPWLNVIDNVAFGLQLR---GIEKAQRREIAHQMLALVGLEGAEHKYIWQ 132
Query: 750 LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 788
L G R+R+ IA L P ++ +DEP LDA
Sbjct: 133 LSG------GMRQRVGIARALAVEPQLLLLDEPFGALDA 165
|
Length = 259 |
| >gnl|CDD|183044 PRK11231, fecE, iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 68.5 bits (168), Expect = 2e-12
Identities = 59/215 (27%), Positives = 97/215 (45%), Gaps = 28/215 (13%)
Query: 631 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQET---F 687
+LN +S + G +TAL+G +G GK+TL+ A T +G + + P +
Sbjct: 17 ILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTP--QSGTVFLGDKPISMLSSRQL 74
Query: 688 ARISGYCEQNDIHSPFVTIYE------SLLFSAWLRLSPEVDSETRKMFIDEVMELVELN 741
AR Q+ + +T+ E S S W RLS E +++ ME +N
Sbjct: 75 ARRLALLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAE-----DNARVNQAMEQTRIN 129
Query: 742 PLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT 801
L + + LS QR+R +A+ L + ++ +DEPT+ LD +MR +R
Sbjct: 130 HLADRRL-----TDLSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMREL 184
Query: 802 VDTGRTVVCTIHQPSIDIFEA---FDELFLMKRGG 833
G+TVV +H D+ +A D L ++ G
Sbjct: 185 NTQGKTVVTVLH----DLNQASRYCDHLVVLANGH 215
|
Length = 255 |
| >gnl|CDD|163452 TIGR03740, galliderm_ABC, gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 67.8 bits (166), Expect = 2e-12
Identities = 47/158 (29%), Positives = 77/158 (48%), Gaps = 19/158 (12%)
Query: 632 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYPKKQETFAR 689
+N +S + L+G +GAGK+TL+ ++ G R T +G I G+P ++ +
Sbjct: 16 VNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPT----SGEIIFDGHPWTRKDLHK 71
Query: 690 ISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVG 749
I E ++ +T E+L L P DS IDEV+ +V+L G
Sbjct: 72 IGSLIESPPLYEN-LTARENLKVHTTLLGLP--DSR-----IDEVLNIVDLTN-----TG 118
Query: 750 LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 787
S ++RL IA+ L+ +P ++ +DEPT+GLD
Sbjct: 119 KKKAKQFSLGMKQRLGIAIALLNHPKLLILDEPTNGLD 156
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. Length = 223 |
| >gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Score = 72.0 bits (176), Expect = 2e-12
Identities = 61/200 (30%), Positives = 98/200 (49%), Gaps = 23/200 (11%)
Query: 640 RPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARIS------GY 693
RPG L+GV+GAGKTT +L G T +G+ T++G + IS GY
Sbjct: 1963 RPGECFGLLGVNGAGKTTTFKMLTGDTT--VTSGDATVAG----KSILTNISDVHQNMGY 2016
Query: 694 CEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGV 753
C Q D +T E L A LR P +E + + ++ + L+ L G
Sbjct: 2017 CPQFDAIDDLLTGREHLYLYARLRGVP---AEEIEKVANWSIQSLGLSLYADRLAGT--- 2070
Query: 754 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIH 813
S +++L+ A+ L+ P ++ +DEPT+G+D +A ++ T+ + + GR VV T H
Sbjct: 2071 --YSGGNKRKLSTAIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLTSH 2128
Query: 814 QPSIDIFEAF-DELFLMKRG 832
S++ EA L +M +G
Sbjct: 2129 --SMEECEALCTRLAIMVKG 2146
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272 |
| >gnl|CDD|184585 PRK14239, PRK14239, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 67.9 bits (166), Expect = 3e-12
Identities = 69/211 (32%), Positives = 99/211 (46%), Gaps = 46/211 (21%)
Query: 632 LNGVSGAFRPGVLTALMGVSGAGKTTL------MDVLAGRKTGGYITGNITISG---YPK 682
LN VS F P +TAL+G SG+GK+TL M+ L T ITG+I +G Y
Sbjct: 21 LNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVT---ITGSIVYNGHNIYSP 77
Query: 683 KQETF---ARISGYCEQNDIHSPF-VTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELV 738
+ +T I +Q + PF ++IYE++++ LRL D K +DE +E
Sbjct: 78 RTDTVDLRKEIGMVFQQPN---PFPMSIYENVVYG--LRLKGIKD----KQVLDEAVE-- 126
Query: 739 ELNPLRQSLVGLP-----------GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 787
+SL G GLS Q++R+ IA L +P II +DEPTS LD
Sbjct: 127 ------KSLKGASIWDEVKDRLHDSALGLSGGQQQRVCIARVLATSPKIILLDEPTSALD 180
Query: 788 ARAAAIVMRTVRNTVD--TGRTVVCTIHQPS 816
+A + T+ D T V ++ Q S
Sbjct: 181 PISAGKIEETLLGLKDDYTMLLVTRSMQQAS 211
|
Length = 252 |
| >gnl|CDD|213234 cd03267, ABC_NatA_like, ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA | Back alignment and domain information |
|---|
Score = 67.4 bits (165), Expect = 3e-12
Identities = 55/188 (29%), Positives = 87/188 (46%), Gaps = 18/188 (9%)
Query: 632 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT--GNITISGYPKKQETF 687
L G+S G + +G +GAGKTT + +L+G + T G + G + + ++++
Sbjct: 37 LKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVP---WKRRKKFL 93
Query: 688 ARISGYCEQNDIHSPFVTIYESLLFSAWL-RLSPEVDSETRKMFIDEVMELVELNPLRQS 746
RI Q + + +S A + L P + DE+ EL++L L +
Sbjct: 94 RRIGVVFGQKTQLWWDLPVIDSFYLLAAIYDLPPARFKKRL----DELSELLDLEELLDT 149
Query: 747 LVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DTG 805
P V LS QR R IA L+ P I+F+DEPT GLD A + ++ + G
Sbjct: 150 ----P-VRQLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQENIRNFLKEYNRERG 204
Query: 806 RTVVCTIH 813
TV+ T H
Sbjct: 205 TTVLLTSH 212
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single integral membrane protein. Length = 236 |
| >gnl|CDD|200134 TIGR01842, type_I_sec_PrtD, type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Score = 70.1 bits (172), Expect = 3e-12
Identities = 58/222 (26%), Positives = 103/222 (46%), Gaps = 29/222 (13%)
Query: 628 KLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ--- 684
K L G+S + + G A++G SG+GK+TL ++ G +G++ + G KQ
Sbjct: 330 KKPTLRGISFSLQAGEALAIIGPSGSGKSTLARLIVGIWP--PTSGSVRLDGADLKQWDR 387
Query: 685 ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLR 744
ETF + GY Q D+ T+ E++ R D E +++E +L +
Sbjct: 388 ETFGKHIGYLPQ-DVELFPGTVAENIA-----RFGENADPE-------KIIEAAKLAGVH 434
Query: 745 QSLVGLP---------GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM 795
+ ++ LP G + LS QR+R+ +A L +P ++ +DEP S LD +
Sbjct: 435 ELILRLPDGYDTVIGPGGATLSGGQRQRIALARALYGDPKLVVLDEPNSNLDEEGEQALA 494
Query: 796 RTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIY 837
++ G TVV H+PS + D++ +++ G +
Sbjct: 495 NAIKALKARGITVVVITHRPS--LLGCVDKILVLQDGRIARF 534
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 544 |
| >gnl|CDD|184198 PRK13638, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 67.7 bits (165), Expect = 4e-12
Identities = 58/208 (27%), Positives = 96/208 (46%), Gaps = 17/208 (8%)
Query: 631 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYPKKQETFA 688
+L G++ F +T L+G +G GK+TL L+G R G + Y K+
Sbjct: 16 VLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLAL 75
Query: 689 R--ISGYCEQNDIHSPFVTIYESLLFSAWLR-LSPEVDSETRKMFIDEVMELVELNPLRQ 745
R ++ + + + I + FS LR L TR+ +DE + LV+ R
Sbjct: 76 RQQVATVFQDPEQQIFYTDIDSDIAFS--LRNLGVPEAEITRR--VDEALTLVDAQHFRH 131
Query: 746 SLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTG 805
+ LS Q+KR+ IA LV + +DEPT+GLD ++ +R V G
Sbjct: 132 Q-----PIQCLSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQG 186
Query: 806 RTVVCTIHQPSID-IFEAFDELFLMKRG 832
V+ + H ID I+E D ++++++G
Sbjct: 187 NHVIISSH--DIDLIYEISDAVYVLRQG 212
|
Length = 271 |
| >gnl|CDD|213266 cd03299, ABC_ModC_like, ATP-binding cassette domain similar to the molybdate transporter | Back alignment and domain information |
|---|
Score = 67.0 bits (164), Expect = 4e-12
Identities = 45/193 (23%), Positives = 85/193 (44%), Gaps = 21/193 (10%)
Query: 646 ALMGVSGAGKTTLMDVLAG--RKTGGYITGNIT-ISGYPKKQETFARISGYCEQNDIHSP 702
++G +G+GK+ L++ +AG + G I N I+ P ++ Y QN P
Sbjct: 29 VILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPPEKRDI----SYVPQNYALFP 84
Query: 703 FVTIYESLLFSAWLRLSPEVDSETRKMFIDEVM---ELVELNPLRQSLVGLPGVSGLSTE 759
+T+Y+++ + R + + E + + I E++ L+ P LS
Sbjct: 85 HMTVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGIDHLLNRKPET-----------LSGG 133
Query: 760 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDI 819
+++R+ IA LV NP I+ +DEP S LD R + ++ V + +
Sbjct: 134 EQQRVAIARALVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDFEEA 193
Query: 820 FEAFDELFLMKRG 832
+ D++ +M G
Sbjct: 194 WALADKVAIMLNG 206
|
Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 70.2 bits (172), Expect = 4e-12
Identities = 62/240 (25%), Positives = 103/240 (42%), Gaps = 26/240 (10%)
Query: 597 LPFEPHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKT 656
L S+ F+ V +S K +L +S + PG A++G SG+GK+
Sbjct: 322 LKDTIGSIEFENVSFSYP------------GKKPVLKDISFSIEPGEKVAIVGPSGSGKS 369
Query: 657 TLMDVLAGRKTGGYITGNITISGYPKKQETFA---RISGYCEQNDIHSPF-VTIYESLLF 712
TL+ +L +G I I G + + + G Q+ + F TI E++
Sbjct: 370 TLIKLLLRLYD--PTSGEILIDGIDIRDISLDSLRKRIGIVSQDPLL--FSGTIRENIAL 425
Query: 713 SAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVA 772
E++ + E + L ++VG GV LS QR+RL IA L+
Sbjct: 426 GRPDATDEEIEEALKLANAHEFIA--NLPDGYDTIVGERGV-NLSGGQRQRLAIARALLR 482
Query: 773 NPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 832
NP I+ +DE TS LD A++ ++ + GRT + H+ S + D + ++ G
Sbjct: 483 NPPILILDEATSALDTETEALIQDALKKLLK-GRTTLIIAHRLS--TIKNADRIIVLDNG 539
|
Length = 567 |
| >gnl|CDD|213216 cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins | Back alignment and domain information |
|---|
Score = 67.2 bits (165), Expect = 4e-12
Identities = 56/197 (28%), Positives = 83/197 (42%), Gaps = 34/197 (17%)
Query: 632 LNGVSGAFRPGVLTALMGVSGAGKTTLM-------DVLAGRKTGGYITGNITISGYPKKQ 684
L G+S PG AL+G SG GK+T++ D +G I + G +
Sbjct: 19 LKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGE---------ILLDGVDIRD 69
Query: 685 ---ETFARISGYCEQNDIHSP---FVTIYESLLFSAWLRLSPEVDSETRKMFIDE-VMEL 737
G Q P TI E++ + EV+ +K I + +M L
Sbjct: 70 LNLRWLRSQIGLVSQE----PVLFDGTIAENIRYGKPDATDEEVEEAAKKANIHDFIMSL 125
Query: 738 VELNPLR-QSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR 796
P +LVG S LS Q++R+ IA L+ NP I+ +DE TS LDA + +V
Sbjct: 126 ----PDGYDTLVG-ERGSQLSGGQKQRIAIARALLRNPKILLLDEATSALDAESEKLVQE 180
Query: 797 TVRNTVDTGRTVVCTIH 813
+ + GRT + H
Sbjct: 181 AL-DRAMKGRTTIVIAH 196
|
MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. Length = 238 |
| >gnl|CDD|185016 PRK15056, PRK15056, manganese/iron transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 67.6 bits (165), Expect = 4e-12
Identities = 47/179 (26%), Positives = 86/179 (48%), Gaps = 18/179 (10%)
Query: 642 GVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQND-IH 700
G + AL+GV+G+GK+TL L G +G I+I G P +Q + Y Q++ +
Sbjct: 33 GSIAALVGVNGSGKSTLFKALMGFVRLA--SGKISILGQPTRQALQKNLVAYVPQSEEVD 90
Query: 701 SPFVTIYESLLFSA------WLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVS 754
F + E ++ WLR + + D + + + V++ R +G
Sbjct: 91 WSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQI----VTAALARVDMVEFRHRQIG----- 141
Query: 755 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIH 813
LS Q+KR+ +A + +I +DEP +G+D + A ++ +R D G+T++ + H
Sbjct: 142 ELSGGQKKRVFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTH 200
|
Length = 272 |
| >gnl|CDD|213220 cd03253, ABCC_ATM1_transporter, ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C | Back alignment and domain information |
|---|
Score = 66.9 bits (164), Expect = 4e-12
Identities = 56/217 (25%), Positives = 94/217 (43%), Gaps = 36/217 (16%)
Query: 631 LLNGVSGAFRPGVLTALMGVSGAGKTTLM-------DVLAGRKTGGYITGNITISGYPKK 683
+L VS G A++G SG+GK+T++ DV +G I I G +
Sbjct: 16 VLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGS---------ILIDGQDIR 66
Query: 684 ---QETFARISGYCEQ-----NDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVM 735
++ R G Q ND TI ++ + EV + I +
Sbjct: 67 EVTLDSLRRAIGVVPQDTVLFND------TIGYNIRYGRPDATDEEVIEAAKAAQIHD-- 118
Query: 736 ELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM 795
+++ ++VG G+ LS +++R+ IA ++ NP I+ +DE TS LD +
Sbjct: 119 KIMRFPDGYDTIVGERGLK-LSGGEKQRVAIARAILKNPPILLLDEATSALDTHTEREIQ 177
Query: 796 RTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 832
+R V GRT + H+ S I A D++ ++K G
Sbjct: 178 AALR-DVSKGRTTIVIAHRLS-TIVNA-DKIIVLKDG 211
|
ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 236 |
| >gnl|CDD|182569 PRK10584, PRK10584, putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Score = 66.7 bits (163), Expect = 5e-12
Identities = 52/173 (30%), Positives = 86/173 (49%), Gaps = 19/173 (10%)
Query: 622 QGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP 681
QG E +L +L GV + G AL+G SG+GK+TL+ +LAG G +G +++ G P
Sbjct: 18 QG--EHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGS--SGEVSLVGQP 73
Query: 682 -------KKQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEV 734
+ + A+ G+ Q+ + P + E++ A LR E ++R +
Sbjct: 74 LHQMDEEARAKLRAKHVGFVFQSFMLIPTLNALENVELPALLR--GESSRQSR----NGA 127
Query: 735 MELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 787
L+E L + L LP + LS +++R+ +A P ++F DEPT LD
Sbjct: 128 KALLEQLGLGKRLDHLP--AQLSGGEQQRVALARAFNGRPDVLFADEPTGNLD 178
|
Length = 228 |
| >gnl|CDD|132027 TIGR02982, heterocyst_DevA, ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Score = 66.2 bits (162), Expect = 6e-12
Identities = 53/208 (25%), Positives = 96/208 (46%), Gaps = 18/208 (8%)
Query: 632 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITI-----SGYPKKQET 686
L ++ PG + L G SG+GKTTL+ ++ G ++ G++ + G +K+
Sbjct: 21 LFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQ--EGSLKVLGQELYGASEKELV 78
Query: 687 FARIS-GYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQ 745
R + GY Q F+T +++ + L L P + + + ++E V L
Sbjct: 79 QLRRNIGYIFQAHNLLGFLTARQNVQMA--LELQPNLSYQEARERARAMLEAVGLG---D 133
Query: 746 SLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DT 804
L P LS Q++R+ IA LV P ++ DEPT+ LD+++ V+ ++ +
Sbjct: 134 HLDYYPH--NLSGGQKQRVAIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQ 191
Query: 805 GRTVVCTIHQPSIDIFEAFDELFLMKRG 832
G T++ H I + D + M+ G
Sbjct: 192 GCTILIVTHDNR--ILDVADRIVHMEDG 217
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. Length = 220 |
| >gnl|CDD|226952 COG4586, COG4586, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 67.8 bits (166), Expect = 7e-12
Identities = 56/208 (26%), Positives = 96/208 (46%), Gaps = 22/208 (10%)
Query: 641 PGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGY-P-KKQETFARISGYCEQ 696
G + +G +GAGK+T + +L G T G + ++G P +++E + R G
Sbjct: 49 KGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVR----VNGKDPFRRREEYLRSIGLVMG 104
Query: 697 NDIHSPFV-TIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP-LRQSLVGLPGVS 754
+ + +SL L+L E+ + +D + E+++L L+ V
Sbjct: 105 QKLQLWWDLPALDSLEV---LKLIYEIPDDEFAERLDFLTEILDLEGFLKWP------VR 155
Query: 755 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN-TVDTGRTVVCTIH 813
LS QR R +A L+ P ++F+DEPT GLD A A + ++ + TV+ T H
Sbjct: 156 KLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQANIREFLKEYNEERQATVLLTTH 215
Query: 814 QPSIDIFEAFDELFLMKRGGQEIYVGPL 841
DI D + L+ + GQ ++ G L
Sbjct: 216 IFD-DIATLCDRVLLIDQ-GQLVFDGTL 241
|
Length = 325 |
| >gnl|CDD|213267 cd03300, ABC_PotA_N, ATP-binding cassette domain of the polyamine transporter | Back alignment and domain information |
|---|
Score = 66.1 bits (162), Expect = 7e-12
Identities = 51/164 (31%), Positives = 78/164 (47%), Gaps = 11/164 (6%)
Query: 627 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ-E 685
V L+GVS + G L+G SG GKTTL+ ++AG +T +G I + G
Sbjct: 11 GGFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPT--SGEILLDGKDITNLP 68
Query: 686 TFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQ 745
R QN P +T++E++ F LRL ++ K + E ++LV+L
Sbjct: 69 PHKRPVNTVFQNYALFPHLTVFENIAFG--LRLK-KLPKAEIKERVAEALDLVQLEGYAN 125
Query: 746 SLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 789
S LS Q++R+ IA LV P ++ +DEP LD +
Sbjct: 126 RK-----PSQLSGGQQQRVAIARALVNEPKVLLLDEPLGALDLK 164
|
PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 232 |
| >gnl|CDD|132302 TIGR03258, PhnT, 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Score = 68.1 bits (166), Expect = 7e-12
Identities = 55/206 (26%), Positives = 89/206 (43%), Gaps = 12/206 (5%)
Query: 630 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ-ETFA 688
+L+ +S G L AL+G SG GKTTL+ +AG +TG I I+
Sbjct: 19 TVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPPHK 78
Query: 689 RISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLV 748
R QN P + + +++ F + P+ D R + + ++LV L
Sbjct: 79 RGLALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAER---VADALKLVGLGDAAAH-- 133
Query: 749 GLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT--GR 806
LP + LS ++R+ IA + P ++ +DEP S LDA A + + +
Sbjct: 134 -LP--AQLSGGMQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPEL 190
Query: 807 TVVCTIHQPSIDIFEAFDELFLMKRG 832
T++C H D D+ +MK G
Sbjct: 191 TILCVTHDQD-DALTLADKAGIMKDG 215
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. Length = 362 |
| >gnl|CDD|224050 COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 67.3 bits (165), Expect = 8e-12
Identities = 62/222 (27%), Positives = 94/222 (42%), Gaps = 31/222 (13%)
Query: 632 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GNITISGYPKKQETFA 688
++ V+ G L+G SG+GKTT + ++ T G I IS
Sbjct: 17 VDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLD---PVEL 73
Query: 689 RIS-GYCEQNDIHSPFVTIYESLLFSAWLRLSPE---VDSETRKMFIDEVMELVELNPLR 744
R GY Q P +T+ E++ P+ D E K DE+++LV L+P
Sbjct: 74 RRKIGYVIQQIGLFPHLTVAENIA------TVPKLLGWDKERIKKRADELLDLVGLDP-S 126
Query: 745 QSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA--RAAA-IVMRTVRNT 801
+ P LS Q++R+ +A L A+P I+ MDEP LD R ++ ++
Sbjct: 127 EYADRYP--HELSGGQQQRVGVARALAADPPILLMDEPFGALDPITRKQLQEEIKELQKE 184
Query: 802 VDTGRTVVCTIHQPSIDIFEAF---DELFLMKRGGQEIYVGP 840
G+T+V H DI EA D + +M G Y P
Sbjct: 185 --LGKTIVFVTH----DIDEALKLADRIAVMDAGEIVQYDTP 220
|
Length = 309 |
| >gnl|CDD|213262 cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cassette domain of the osmoprotectant transporter | Back alignment and domain information |
|---|
Score = 65.8 bits (161), Expect = 1e-11
Identities = 61/218 (27%), Positives = 94/218 (43%), Gaps = 37/218 (16%)
Query: 631 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIT---GNITISGYPKKQET- 686
+N ++ G L+G SG+GKTT M + I G I I G +++
Sbjct: 16 AVNNLNLEIAKGEFLVLIGPSGSGKTTTM-----KMINRLIEPTSGEIFIDGEDIREQDP 70
Query: 687 --FARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLR 744
R GY Q P +T+ E++ + +L + E + DE++ LV L+P
Sbjct: 71 VELRRKIGYVIQQIGLFPHMTVEENI--ALVPKLL-KWPKEKIRERADELLALVGLDP-- 125
Query: 745 QSLVG-LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT------ 797
P LS Q++R+ +A L A+P ++ MDEP LD + R
Sbjct: 126 AEFADRYP--HELSGGQQQRVGVARALAADPPLLLMDEPFGALDP-----ITRDQLQEEF 178
Query: 798 VRNTVDTGRTVVCTIHQPSIDIFEAF---DELFLMKRG 832
R + G+T+V H DI EAF D + +MK G
Sbjct: 179 KRLQQELGKTIVFVTH----DIDEAFRLADRIAIMKNG 212
|
OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 242 |
| >gnl|CDD|215650 pfam00005, ABC_tran, ABC transporter | Back alignment and domain information |
|---|
Score = 62.3 bits (152), Expect = 1e-11
Identities = 30/133 (22%), Positives = 54/133 (40%), Gaps = 18/133 (13%)
Query: 656 TTLMDVLAGRKTGGYITGNITISGYPKKQETFARIS----GYCEQNDIHSPFVTIYESLL 711
+TL+ ++ G +G I + G + ++ G Q+ P +T+ E+L
Sbjct: 1 STLLKLITGLLQ--PTSGTILLDGEDGTGLSSRKLLRKRIGVVFQDPQLFPELTVRENLF 58
Query: 712 FSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELV 771
F + +E +E V L V LS Q++R+ IA L+
Sbjct: 59 FGL--------RDKEADARAEEALERVGLPDFLDRE----PVGTLSGGQKQRVAIARALL 106
Query: 772 ANPSIIFMDEPTS 784
P ++ +DEPT+
Sbjct: 107 KKPKLLLLDEPTA 119
|
ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide as in human CFTR, or belong in different polypeptide chains. Length = 119 |
| >gnl|CDD|182182 PRK09984, PRK09984, phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 65.8 bits (160), Expect = 1e-11
Identities = 64/225 (28%), Positives = 106/225 (47%), Gaps = 26/225 (11%)
Query: 632 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITG-NITISGYPKKQETFARI 690
L+ V G + AL+G SG+GK+TL+ L+G TG G +I + G ++E R+
Sbjct: 20 LHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQRE--GRL 77
Query: 691 SGYCEQNDIHSPFV----------TIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVEL 740
+ ++ ++ ++ ++ E++L A L +P + + + L
Sbjct: 78 ARDIRKSRANTGYIFQQFNLVNRLSVLENVLIGA-LGSTPFWRTCFS--WFTREQKQRAL 134
Query: 741 NPLRQSLVGLPG-----VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM 795
L + VG+ VS LS Q++R+ IA L+ +I DEP + LD +A IVM
Sbjct: 135 QALTR--VGMVHFAHQRVSTLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVM 192
Query: 796 RTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVG 839
T+R+ G TVV T+HQ +D + E + R G Y G
Sbjct: 193 DTLRDINQNDGITVVVTLHQ--VDYALRYCERIVALRQGHVFYDG 235
|
Length = 262 |
| >gnl|CDD|132561 TIGR03522, GldA_ABC_ATP, gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Score = 66.3 bits (162), Expect = 2e-11
Identities = 45/164 (27%), Positives = 81/164 (49%), Gaps = 24/164 (14%)
Query: 632 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYI---TGNITISGYPKKQETFA 688
L+ VS + G + +G +GAGK+T M ++ G Y+ +G++ + G Q
Sbjct: 18 LDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITG-----YLPPDSGSVQVCGEDVLQNPKE 72
Query: 689 --RISGYCEQNDIHSPFVTIYESLLFSAWLRLSPE---VDSETRKMFIDEVMELVELNPL 743
R GY + H+P +Y + +L+ + + K ++E++ELV L P
Sbjct: 73 VQRNIGYLPE---HNP---LYLDMYVREYLQFIAGIYGMKGQLLKQRVEEMIELVGLRPE 126
Query: 744 RQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 787
+ +G LS R+R+ +A L+ +P ++ +DEPT+GLD
Sbjct: 127 QHKKIG-----QLSKGYRQRVGLAQALIHDPKVLILDEPTTGLD 165
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. Length = 301 |
| >gnl|CDD|131721 TIGR02673, FtsE, cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Score = 64.6 bits (158), Expect = 2e-11
Identities = 51/190 (26%), Positives = 81/190 (42%), Gaps = 12/190 (6%)
Query: 632 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKT---GGYITGNITISGYPKKQETFA 688
L+ VS R G L G SGAGKTTL+ +L G T G ++ +Q
Sbjct: 18 LHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLL 77
Query: 689 RIS-GYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSL 747
R G Q+ P T+YE++ +R E + + R + + V L
Sbjct: 78 RRRIGVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRR---VGAALRQVGLEH---KA 131
Query: 748 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT 807
P LS +++R+ IA +V +P ++ DEPT LD + ++ ++ G T
Sbjct: 132 DAFPEQ--LSGGEQQRVAIARAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNKRGTT 189
Query: 808 VVCTIHQPSI 817
V+ H S+
Sbjct: 190 VIVATHDLSL 199
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein [Cellular processes, Cell division]. Length = 214 |
| >gnl|CDD|131266 TIGR02211, LolD_lipo_ex, lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Score = 64.7 bits (158), Expect = 2e-11
Identities = 56/213 (26%), Positives = 96/213 (45%), Gaps = 18/213 (8%)
Query: 628 KLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETF 687
+L GVS + G + A++G SG+GK+TL+ +L G +G + +G + +
Sbjct: 17 DTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNP--TSGEVLFNGQSLSKLSS 74
Query: 688 ARISGYCEQNDIHSPFVTIYESLL--FSAWLRLS-PEVDSETRKMFIDEV-MELVELNPL 743
+ + + F+ + LL F+A ++ P + + E E++E L
Sbjct: 75 NERA---KLRNKKLGFIYQFHHLLPDFTALENVAMPLLIGKKSVKEAKERAYEMLEKVGL 131
Query: 744 RQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV---MRTVRN 800
+ P S LS +R+R+ IA LV PS++ DEPT LD A I+ M +
Sbjct: 132 EHRINHRP--SELSGGERQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNR 189
Query: 801 TVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGG 833
++T VV H ++ + D + MK G
Sbjct: 190 ELNTSFLVV--THDL--ELAKKLDRVLEMKDGQ 218
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina [Protein fate, Protein and peptide secretion and trafficking]. Length = 221 |
| >gnl|CDD|226969 COG4618, ArpD, ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Score = 67.7 bits (166), Expect = 2e-11
Identities = 61/211 (28%), Positives = 100/211 (47%), Gaps = 21/211 (9%)
Query: 630 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ---ET 686
+L G+S A + G ++G SG+GK+TL +L G +G++ + G +Q E
Sbjct: 350 PILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWP--PTSGSVRLDGADLRQWDREQ 407
Query: 687 FARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMF----IDEVMELVELNP 742
R GY Q D+ TI E++ R E D E K+ + V EL+ P
Sbjct: 408 LGRHIGYLPQ-DVELFDGTIAENIA-----RFGEEADPE--KVIEAARLAGVHELILRLP 459
Query: 743 L-RQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT 801
+ +G G + LS QR+R+ +A L +P ++ +DEP S LD+ A + +
Sbjct: 460 QGYDTRIG-EGGATLSGGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAA 518
Query: 802 VDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 832
G TVV H+PS + D++ +++ G
Sbjct: 519 KARGGTVVVIAHRPS--ALASVDKILVLQDG 547
|
Length = 580 |
| >gnl|CDD|224058 COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 66.1 bits (162), Expect = 2e-11
Identities = 57/218 (26%), Positives = 97/218 (44%), Gaps = 30/218 (13%)
Query: 628 KLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GNITISGYPKKQ 684
+ L+ VS G + ++G SGAGK+TL+ ++ R T G + ++ + +
Sbjct: 18 TVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAE 77
Query: 685 -ETFARISGYCEQ--NDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELN 741
+ G Q N + S T++E++ F L L+ V K V EL+EL
Sbjct: 78 LRQLRQKIGMIFQHFNLLSSR--TVFENVAFP--LELA-GVPKAEIK---QRVAELLEL- 128
Query: 742 PLRQSLVGLPGVSG-----LSTEQRKRLTIAVELVANPSIIFMDEPTSGLD-ARAAAIVM 795
VGL + LS Q++R+ IA L NP I+ DE TS LD +I+
Sbjct: 129 ------VGLSDKADRYPAQLSGGQKQRVAIARALANNPKILLCDEATSALDPETTQSILE 182
Query: 796 RTVRNTVDTGRTVVCTIHQPSIDIFEAF-DELFLMKRG 832
+ G T+V H+ +++ + D + ++ +G
Sbjct: 183 LLKDINRELGLTIVLITHE--MEVVKRICDRVAVLDQG 218
|
Length = 339 |
| >gnl|CDD|224042 COG1117, PstB, ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 64.9 bits (159), Expect = 3e-11
Identities = 53/182 (29%), Positives = 83/182 (45%), Gaps = 49/182 (26%)
Query: 632 LNGVSGAFRPGVLTALMGVSGAGKTTLM-------DVLAGRKTGGYITGNITISG---YP 681
L ++ +TAL+G SG GK+TL+ D++ G + + G + + G Y
Sbjct: 23 LKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGAR----VEGEVLLDGKNIYD 78
Query: 682 KKQETFA---RISGYCEQ--NDIHSPFV-TIYESLLFSAWLRLSPEVDSETRKMFIDEVM 735
K + R+ G Q N PF +IY+++ + LRL D E +DE++
Sbjct: 79 PKVDVVELRRRV-GMVFQKPN----PFPMSIYDNVAYG--LRLHGIKDKE-----LDEIV 126
Query: 736 ELVELNPLRQSLVGL----------PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 785
E + L++ L + GLS Q++RL IA L P ++ MDEPTS
Sbjct: 127 E----SSLKK--AALWDEVKDRLHKSAL-GLSGGQQQRLCIARALAVKPEVLLMDEPTSA 179
Query: 786 LD 787
LD
Sbjct: 180 LD 181
|
Length = 253 |
| >gnl|CDD|225438 COG2884, FtsE, Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Score = 63.8 bits (156), Expect = 4e-11
Identities = 57/186 (30%), Positives = 86/186 (46%), Gaps = 12/186 (6%)
Query: 632 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GNITISGYPKKQETFA 688
L VS G L G SGAGK+TL+ ++ G R T G I +S ++ F
Sbjct: 18 LRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFL 77
Query: 689 RIS-GYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSL 747
R G Q+ P T+YE++ LR+ + E R+ V E+++L L+
Sbjct: 78 RRQIGVVFQDFRLLPDRTVYENVALP--LRVIGKPPREIRR----RVSEVLDLVGLKHKA 131
Query: 748 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT 807
LP S LS +++R+ IA +V P+++ DEPT LD + +MR G T
Sbjct: 132 RALP--SQLSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTT 189
Query: 808 VVCTIH 813
V+ H
Sbjct: 190 VLMATH 195
|
Length = 223 |
| >gnl|CDD|131197 TIGR02142, modC_ABC, molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 65.9 bits (161), Expect = 4e-11
Identities = 42/153 (27%), Positives = 70/153 (45%), Gaps = 16/153 (10%)
Query: 641 PGV-LTALMGVSGAGKTTLMDVLAG--RKTGG--YITGNITISGYPKKQ-ETFARISGYC 694
PG +TA+ G SG+GKTTL+ ++AG R G + G R GY
Sbjct: 21 PGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIGYV 80
Query: 695 EQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVS 754
Q P +++ +L + R++ + V+EL+ + L L G
Sbjct: 81 FQEARLFPHLSVRGNLRYGMK-----RARPSERRISFERVIELLGIGHLLGRLPG----- 130
Query: 755 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 787
LS +++R+ I L+++P ++ MDEP + LD
Sbjct: 131 RLSGGEKQRVAIGRALLSSPRLLLMDEPLAALD 163
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter [Transport and binding proteins, Anions]. Length = 354 |
| >gnl|CDD|226647 COG4181, COG4181, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 64.0 bits (156), Expect = 4e-11
Identities = 57/209 (27%), Positives = 91/209 (43%), Gaps = 24/209 (11%)
Query: 620 KVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISG 679
K G E +L +L GV + G A++G SG+GK+TL+ VLAG +G + + G
Sbjct: 14 KTVGQGEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPS--SGEVRLLG 71
Query: 680 YP---KKQETFARIS----GYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFID 732
P ++ A + G+ Q+ P +T E++ LR DS
Sbjct: 72 QPLHKLDEDARAALRARHVGFVFQSFHLIPNLTALENVALPLELRGESSADSRAG----- 126
Query: 733 EVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD----A 788
L+E L + L P LS +++R+ +A P ++F DEPT LD
Sbjct: 127 -AKALLEAVGLGKRLTHYPA--QLSGGEQQRVALARAFAGRPDVLFADEPTGNLDRATGD 183
Query: 789 RAAAIVMRTVRNTVDTGRTVVCTIHQPSI 817
+ A ++ R + G T+V H P +
Sbjct: 184 KIADLLFALNR---ERGTTLVLVTHDPQL 209
|
Length = 228 |
| >gnl|CDD|183063 PRK11264, PRK11264, putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Score = 64.0 bits (156), Expect = 5e-11
Identities = 60/201 (29%), Positives = 91/201 (45%), Gaps = 26/201 (12%)
Query: 630 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDV--LAGRKTGGYIT-GNITISGYP--KKQ 684
+L+G+ +PG + A++G SG+GKTTL+ L + G I G+ITI +Q
Sbjct: 17 TVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQ 76
Query: 685 ETFARI----SGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVEL 740
+ R G+ QN P T+ E+++ + V E ++ EL+
Sbjct: 77 KGLIRQLRQHVGFVFQNFNLFPHRTVLENIIEGPVI-----VKGEPKEEATARARELL-- 129
Query: 741 NPLRQSLVGLPGVSG-----LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM 795
+ VGL G LS Q++R+ IA L P +I DEPTS LD V+
Sbjct: 130 -----AKVGLAGKETSYPRRLSGGQQQRVAIARALAMRPEVILFDEPTSALDPELVGEVL 184
Query: 796 RTVRNTVDTGRTVVCTIHQPS 816
T+R RT+V H+ S
Sbjct: 185 NTIRQLAQEKRTMVIVTHEMS 205
|
Length = 250 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 66.5 bits (163), Expect = 5e-11
Identities = 50/182 (27%), Positives = 77/182 (42%), Gaps = 31/182 (17%)
Query: 630 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFAR 689
LL VS PG L+G +GAGK+TL+ +LAG +G +T R
Sbjct: 17 PLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEP--DSGEVTRPKG-------LR 67
Query: 690 ISGYCEQNDIHSPFVTIYESLL--FSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSL 747
+ GY Q P T+ + ++ F L E++ + + L EL L + L
Sbjct: 68 V-GYLSQEPPLDPEKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEEL 126
Query: 748 ---------------VGLPG----VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 788
+G P VS LS R+R+ +A L+ P ++ +DEPT+ LD
Sbjct: 127 DGWTLEARAEEALLGLGFPDEDRPVSSLSGGWRRRVALARALLEEPDLLLLDEPTNHLDL 186
Query: 789 RA 790
+
Sbjct: 187 ES 188
|
Length = 530 |
| >gnl|CDD|234152 TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 65.4 bits (160), Expect = 6e-11
Identities = 54/167 (32%), Positives = 82/167 (49%), Gaps = 27/167 (16%)
Query: 632 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GNITISGYPKKQETFA 688
L +S + + G L+G SG GKTTL+ ++AG R+T G I G I+ P ++ +
Sbjct: 20 LKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQKRDY- 78
Query: 689 RISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELV-ELNPLRQSL 747
G Q+ P +T+ +++ + + R M EV E V EL L
Sbjct: 79 ---GIVFQSYALFPNLTVADNIAYGL----------KNRGMGRAEVAERVAEL----LDL 121
Query: 748 VGLPGV-----SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 789
VGLPG LS Q++R+ +A L +P ++ +DEP S LDAR
Sbjct: 122 VGLPGSERKYPGQLSGGQQQRVALARALATSPGLLLLDEPLSALDAR 168
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely [Transport and binding proteins, Amino acids, peptides and amines]. Length = 353 |
| >gnl|CDD|184199 PRK13639, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 64.3 bits (157), Expect = 6e-11
Identities = 66/223 (29%), Positives = 103/223 (46%), Gaps = 39/223 (17%)
Query: 627 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISG----Y 680
D L G++ G + AL+G +GAGK+TL G + T +G + I G Y
Sbjct: 13 DGTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPT----SGEVLIKGEPIKY 68
Query: 681 PKKQETFARIS-GYCEQN---DIHSPFVTIYESLLFSAWLRLS-PEVDSETRKMFIDEVM 735
KK R + G QN + +P T+ E + F L L + + E R V
Sbjct: 69 DKKSLLEVRKTVGIVFQNPDDQLFAP--TVEEDVAFGP-LNLGLSKEEVEKR------VK 119
Query: 736 ELVELNPLRQSLVGLPGVSG-----LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARA 790
E ++ VG+ G LS Q+KR+ IA L P II +DEPTSGLD
Sbjct: 120 EALKA-------VGMEGFENKPPHHLSGGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMG 172
Query: 791 AAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAF-DELFLMKRG 832
A+ +M+ + + G T++ + H +D+ + D++++M G
Sbjct: 173 ASQIMKLLYDLNKEGITIIISTHD--VDLVPVYADKVYVMSDG 213
|
Length = 275 |
| >gnl|CDD|172200 PRK13652, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 64.1 bits (156), Expect = 7e-11
Identities = 56/209 (26%), Positives = 101/209 (48%), Gaps = 27/209 (12%)
Query: 646 ALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARIS---GYCEQN---DI 699
A++G +GAGK+TL G +G++ I G P +E + G QN I
Sbjct: 34 AVIGPNGAGKSTLFRHFNGILKPT--SGSVLIRGEPITKENIREVRKFVGLVFQNPDDQI 91
Query: 700 HSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTE 759
SP T+ + + F ++ +D ET + + ++ L LR + P LS
Sbjct: 92 FSP--TVEQDIAFGP---INLGLDEETVAHRVSSALHMLGLEELRDRV---P--HHLSGG 141
Query: 760 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSID 818
++KR+ IA + P ++ +DEPT+GLD + ++ + + +T G TV+ + HQ +
Sbjct: 142 EKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLDL- 200
Query: 819 IFEAFDELFLMKRGG-------QEIYVGP 840
+ E D +++M +G +EI++ P
Sbjct: 201 VPEMADYIYVMDKGRIVAYGTVEEIFLQP 229
|
Length = 277 |
| >gnl|CDD|226620 COG4136, COG4136, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 62.9 bits (153), Expect = 8e-11
Identities = 45/164 (27%), Positives = 73/164 (44%), Gaps = 19/164 (11%)
Query: 631 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGY-ITGNITISG-----YPKKQ 684
LL V+ G + LMG SG GK+TL+ + G G + TG + ++ P Q
Sbjct: 17 LLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAAQ 76
Query: 685 ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLR 744
R G Q+ + P +++ ++LLF+ L + R+ + +E L+
Sbjct: 77 ----RQIGILFQDALLFPHLSVGQNLLFA----LPATLKGNARRNAANAALERSGLDGAF 128
Query: 745 QSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 788
P + LS QR R+ + L+A P + +DEP S LD
Sbjct: 129 HQ---DP--ATLSGGQRARVALLRALLAQPKALLLDEPFSRLDV 167
|
Length = 213 |
| >gnl|CDD|223521 COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 64.1 bits (157), Expect = 1e-10
Identities = 55/227 (24%), Positives = 93/227 (40%), Gaps = 41/227 (18%)
Query: 631 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GNITISG---YPKKQ 684
++GVS + G + ++G SG+GK+ L + G K I G I G +
Sbjct: 20 AVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSE 79
Query: 685 ETFARISG----YCEQNDIHS--PFVTI----YESLLFSAWLRLSPEVDSETRKMFIDEV 734
+ +I G Q+ + S P +TI E L ++K +
Sbjct: 80 KELRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKG--------LSKKEAKERA 131
Query: 735 MELVELNPLRQSLVGLPGVSG--------LSTEQRKRLTIAVELVANPSIIFMDEPTSGL 786
+EL+E LVG+P LS R+R+ IA+ L NP ++ DEPT+ L
Sbjct: 132 IELLE-------LVGIPDPERRLKSYPHELSGGMRQRVMIAMALALNPKLLIADEPTTAL 184
Query: 787 DARAAAIVMRTVRNTV-DTGRTVVCTIHQPSIDIFEAFDELFLMKRG 832
D A ++ ++ + G ++ H + + E D + +M G
Sbjct: 185 DVTVQAQILDLLKELQREKGTALILITHDLGV-VAEIADRVAVMYAG 230
|
Length = 316 |
| >gnl|CDD|213268 cd03301, ABC_MalK_N, The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Score = 62.3 bits (152), Expect = 1e-10
Identities = 48/147 (32%), Positives = 70/147 (47%), Gaps = 17/147 (11%)
Query: 647 LMGVSGAGKTTLMDVLAG--RKTGG--YITGNITISGYPKKQETFARISGYCEQNDIHSP 702
L+G SG GKTT + ++AG T G YI G PK R QN P
Sbjct: 31 LLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPKD-----RDIAMVFQNYALYP 85
Query: 703 FVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRK 762
+T+Y+++ F LR P+ + + R + EV EL+++ L LS QR+
Sbjct: 86 HMTVYDNIAFGLKLRKVPKDEIDER---VREVAELLQIEHLLDRKP-----KQLSGGQRQ 137
Query: 763 RLTIAVELVANPSIIFMDEPTSGLDAR 789
R+ + +V P + MDEP S LDA+
Sbjct: 138 RVALGRAIVREPKVFLMDEPLSNLDAK 164
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. Length = 213 |
| >gnl|CDD|227320 COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 65.4 bits (160), Expect = 1e-10
Identities = 52/194 (26%), Positives = 84/194 (43%), Gaps = 28/194 (14%)
Query: 632 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARIS 691
L + G A++G SG+GK+TL+ +LAG G+IT++G I+
Sbjct: 354 LKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWD--PQQGSITLNGVE--------IA 403
Query: 692 GYCEQNDIHSPFVTIYESLLFSAWLR-----LSPEVDSETRKMFIDEVMELVELNPLRQS 746
EQ + V LFS LR +P+ E + ++ V L L +S
Sbjct: 404 SLDEQALRETISVLTQRVHLFSGTLRDNLRLANPDASDEE----LWAALQQVGLEKLLES 459
Query: 747 L-------VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 799
+G G LS +R+RL +A L+ + + +DEPT GLD V+ +
Sbjct: 460 APDGLNTWLGEGG-RRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLALLF 518
Query: 800 NTVDTGRTVVCTIH 813
+ G+T++ H
Sbjct: 519 EHAE-GKTLLMVTH 531
|
Length = 573 |
| >gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 64.9 bits (159), Expect = 1e-10
Identities = 47/199 (23%), Positives = 86/199 (43%), Gaps = 39/199 (19%)
Query: 629 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYPKKQET 686
+V + VS + + G + AL+G +GAGK+TLM +L G + G I + G
Sbjct: 17 VVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSG----EIRVDGKE----- 67
Query: 687 FARISGYCEQND--------IHSPFV-----TIYESLLFSAWLRLSPEVD-SETRKMFID 732
RI D +H F+ T+ E+++ +D + R I
Sbjct: 68 -VRIKS---PRDAIRLGIGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARAR-IK 122
Query: 733 EVMEL--VELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARA 790
E+ E + ++P + V+ LS +++R+ I L ++ +DEPT+ L +
Sbjct: 123 ELSERYGLPVDPDAK-------VADLSVGEQQRVEILKALYRGARLLILDEPTAVLTPQE 175
Query: 791 AAIVMRTVRNTVDTGRTVV 809
A + +R G+T++
Sbjct: 176 ADELFEILRRLAAEGKTII 194
|
Length = 501 |
| >gnl|CDD|183056 PRK11248, tauB, taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 62.8 bits (153), Expect = 1e-10
Identities = 63/208 (30%), Positives = 101/208 (48%), Gaps = 26/208 (12%)
Query: 632 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARIS 691
L ++ G L ++G SG GKTTL++++AG Y G+IT+ G P + R
Sbjct: 17 LEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVP--YQHGSITLDGKPVEGPGAER-- 72
Query: 692 GYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLP 751
G QN+ P+ + +++ F L+L+ V+ R ++++ V L + +
Sbjct: 73 GVVFQNEGLLPWRNVQDNVAFG--LQLA-GVEKMQRLEIAHQMLKKVGLEGAEKRYIW-- 127
Query: 752 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA--RAAAIVMRTVRNTV--DTGRT 807
LS QR+R+ IA L ANP ++ +DEP LDA R M+T+ + +TG+
Sbjct: 128 ---QLSGGQRQRVGIARALAANPQLLLLDEPFGALDAFTREQ---MQTLLLKLWQETGKQ 181
Query: 808 VVCTIHQPSIDIFEAF---DELFLMKRG 832
V+ H DI EA EL L+ G
Sbjct: 182 VLLITH----DIEEAVFMATELVLLSPG 205
|
Length = 255 |
| >gnl|CDD|226622 COG4138, BtuD, ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 62.6 bits (152), Expect = 1e-10
Identities = 59/223 (26%), Positives = 98/223 (43%), Gaps = 27/223 (12%)
Query: 619 MKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITIS 678
M++ V E L +SG R G + L+G +GAGK+TL+ +AG +G +G+I +
Sbjct: 4 MQLNDVAES--TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSG---SGSIQFA 58
Query: 679 GYPKKQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVM 735
G P + AR Y Q +P W L+ +TR +++V
Sbjct: 59 GQPLEAWSATELARHRAYLSQQ--QTP------PFAMPVWHYLTLHQPDKTRTELLNDVA 110
Query: 736 ELVEL-NPLRQSLVGLPGVSGLSTEQRKRLT---IAVELVANPS--IIFMDEPTSGLDAR 789
+ L + L +S L G QR RL + + ANP+ ++ +DEP + LD
Sbjct: 111 GALALDDKLGRSTNQLSG----GEWQRVRLAAVVLQITPDANPAGQLLLLDEPMNSLDVA 166
Query: 790 AAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 832
+ + R + G +V + H + + A +L+KRG
Sbjct: 167 QQSALDRLLSALCQQGLAIVMSSHDLNHTLRHA-HRAWLLKRG 208
|
Length = 248 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 64.9 bits (159), Expect = 2e-10
Identities = 56/216 (25%), Positives = 97/216 (44%), Gaps = 20/216 (9%)
Query: 630 VLLNGVSGAFRPGVLTALMGVSGAGKTT----LMDVL--AGRKTGGYIT-GNITISGYPK 682
+ VS PG + ++G SG+GK+T LM +L GR T G + + G +
Sbjct: 23 PAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSE 82
Query: 683 KQET--FARISGYCEQNDIHS--PFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELV 738
++ + Q+ + S P +TI + A LRL + + E++E V
Sbjct: 83 REMRKLRGKRIAMIFQDPMTSLNPVMTI-GDQIREA-LRLHGKGSRAEARKRAVELLEQV 140
Query: 739 EL-NPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT 797
L +P R+ P LS R+R+ IA+ L P ++ DEPT+ LD A ++
Sbjct: 141 GLPDPERRDR--YPHQ--LSGGMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDL 196
Query: 798 VRN-TVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 832
+++ + G V+ H + + E D + +M +G
Sbjct: 197 LKDLQRELGMAVLFITHDLGV-VAELADRVVVMYKG 231
|
Length = 539 |
| >gnl|CDD|223487 COG0410, LivF, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 62.1 bits (152), Expect = 2e-10
Identities = 55/213 (25%), Positives = 89/213 (41%), Gaps = 30/213 (14%)
Query: 632 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT---GNITISGYPKKQET 686
L GVS G + AL+G +GAGKTTL+ + G R G I +IT
Sbjct: 19 LRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDIT------GLPP 72
Query: 687 FARIS---GYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELV-ELNP 742
R Y + P +T+ E+LL L D E ++ ++EV EL L
Sbjct: 73 HERARLGIAYVPEGRRIFPRLTVEENLL----LGAYARRDKEAQERDLEEVYELFPRLKE 128
Query: 743 LRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV 802
R G LS +++ L IA L++ P ++ +DEP+ GL + + ++
Sbjct: 129 RRNQRAGT-----LSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIKELR 183
Query: 803 DTGRTVVCTIHQPSIDIFEAF---DELFLMKRG 832
G + + Q + A D ++++ G
Sbjct: 184 KEGGMTILLVEQ---NARFALEIADRGYVLENG 213
|
Length = 237 |
| >gnl|CDD|162242 TIGR01187, potA, spermidine/putrescine ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 63.7 bits (155), Expect = 2e-10
Identities = 60/226 (26%), Positives = 94/226 (41%), Gaps = 33/226 (14%)
Query: 647 LMGVSGAGKTTLMDVLAGRKT---GGYITGNITISGYPKKQETFARISGYCEQNDIHSPF 703
L+G SG GKTTL+ +LAG + G + ++ P R Q+ P
Sbjct: 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVPPHL----RHINMVFQSYALFPH 56
Query: 704 VTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKR 763
+T+ E++ F +R +V K + E + LV+L LS Q++R
Sbjct: 57 MTVEENVAFGLKMR---KVPRAEIKPRVLEALRLVQLEEFADR-----KPHQLSGGQQQR 108
Query: 764 LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEA 822
+ +A LV P I+ +DEP S LD + + ++ + G T V H D EA
Sbjct: 109 VALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQLGITFVFVTH----DQEEA 164
Query: 823 F---DELFLMKRG-------GQEIYVGPLGRHSCHLI---SYFEAI 855
D + +M++G +EIY P I + FEA
Sbjct: 165 MTMSDRIAIMRKGKIAQIGTPEEIYEEPANLFVARFIGEINVFEAT 210
|
This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included) [Transport and binding proteins, Amino acids, peptides and amines]. Length = 325 |
| >gnl|CDD|163508 TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Score = 65.0 bits (159), Expect = 2e-10
Identities = 63/220 (28%), Positives = 97/220 (44%), Gaps = 44/220 (20%)
Query: 631 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYPKKQETFA 688
L+ S +PG AL+G SG+GK+T+ ++AG + G I G P+++
Sbjct: 494 LIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSG----EILFDGIPREEIPRE 549
Query: 689 RISG---YCEQNDIHSPFVTIYESLLFSAWLRLSPE---VDSETRKMFIDEVM------- 735
++ +Q DI T+ ++L + W P+ V + D +
Sbjct: 550 VLANSVAMVDQ-DIFLFEGTVRDNL--TLWDPTIPDADLVRACKDAAIHDVITSRPGGYD 606
Query: 736 -ELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV 794
EL E G + LS QR+RL IA LV NPSI+ +DE TS LD I+
Sbjct: 607 AELAE------------GGANLSGGQRQRLEIARALVRNPSILILDEATSALDPETEKII 654
Query: 795 MRTVRNTVDTGRTVVCTI--HQPSIDIFEAFDELFLMKRG 832
+R R C I H+ S I + DE+ +++RG
Sbjct: 655 DDNLRR-----RGCTCIIVAHRLST-IRDC-DEIIVLERG 687
|
This protein describes a multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHLM, Nitrile Hydratase Leader Microcin [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 710 |
| >gnl|CDD|237451 PRK13631, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 63.3 bits (154), Expect = 2e-10
Identities = 58/279 (20%), Positives = 100/279 (35%), Gaps = 53/279 (18%)
Query: 578 QSLSLAEAEASRPKKKGMVLPFEPHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSG 637
+ + P ++L + FDE E+ LN +S
Sbjct: 3 DYFMKKKLKVPNPLSDDIILRVKNLYCVFDE-----KQENELVA----------LNNISY 47
Query: 638 AFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISG-YPKKQETFARISGYCEQ 696
F + ++G SG+GK+TL+ G Y G I + Y ++ +
Sbjct: 48 TFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKY--GTIQVGDIYIGDKKNNHELITNPYS 105
Query: 697 NDIHS--------PFV-----------TIYESLLFSAWLRLSPEVDSETRKMFIDEVMEL 737
I + V TI + ++F + +++ F M L
Sbjct: 106 KKIKNFKELRRRVSMVFQFPEYQLFKDTIEKDIMFGPVALGVKKSEAKKLAKFYLNKMGL 165
Query: 738 ----VELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAI 793
+E +P GLS Q++R+ IA L P I+ DEPT+GLD +
Sbjct: 166 DDSYLERSPF-----------GLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHE 214
Query: 794 VMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 832
+M+ + + +TV H + E DE+ +M +G
Sbjct: 215 MMQLILDAKANNKTVFVITHTME-HVLEVADEVIVMDKG 252
|
Length = 320 |
| >gnl|CDD|226592 COG4107, PhnK, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 62.5 bits (152), Expect = 2e-10
Identities = 65/218 (29%), Positives = 98/218 (44%), Gaps = 32/218 (14%)
Query: 635 VSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITI---SGYPK--------K 683
VS PG + ++G SG+GKTTL+ ++GR T G +T G P+ +
Sbjct: 25 VSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPD--AGTVTYRMRDGQPRDLYTMSEAE 82
Query: 684 QETFARIS-GYCEQNDIH------SPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVME 736
+ R G+ QN S I E L+ + R + +E + +E
Sbjct: 83 RRRLLRTEWGFVHQNPRDGLRMQVSAGGNIGERLM-AIGARHYGNIRAEAQDW-----LE 136
Query: 737 LVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR 796
VE++ R + LP S ++RL IA LV P ++FMDEPT GLD A ++
Sbjct: 137 EVEIDLDR--IDDLP--RTFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLD 192
Query: 797 TVRNTV-DTGRTVVCTIHQPSIDIFEAFDELFLMKRGG 833
+R V + G VV H ++ A D L +MK+G
Sbjct: 193 LLRGLVRELGLAVVIVTHDLAVARLLA-DRLMVMKQGQ 229
|
Length = 258 |
| >gnl|CDD|234357 TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 64.6 bits (158), Expect = 2e-10
Identities = 56/183 (30%), Positives = 82/183 (44%), Gaps = 30/183 (16%)
Query: 626 EDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK-- 683
D ++L+ VS PG A++G SG+GK+TL+ +L G +T +G++ G
Sbjct: 463 PDGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPE--SGSVFYDGQDLAGL 520
Query: 684 -QETFARISGYCEQN-DIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELN 741
+ R G QN + S +I+E++ A L+ DE E +
Sbjct: 521 DVQAVRRQLGVVLQNGRLMSG--SIFENIAGGA--PLTL-----------DEAWEAARMA 565
Query: 742 PLRQSLVGLP---------GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 792
L + + +P G LS QR+RL IA LV P I+ DE TS LD R A
Sbjct: 566 GLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIARALVRKPRILLFDEATSALDNRTQA 625
Query: 793 IVM 795
IV
Sbjct: 626 IVS 628
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal leader sequence cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, members of protein families related to nitrile hydratase alpha subunit or to nif11 have undergone paralogous family expansions, with members possessing a putative bacteriocin cleavage region ending with a classic Gly-Gly motif. Those sets of putative bacteriocins, members of this protein family and its partners TIGR03794 and TIGR03796, and cyclodehydratase/docking scaffold fusion proteins of thiazole/oxazole biosynthesis frequently show correlated species distribution and co-clustering within many of those genomes [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 686 |
| >gnl|CDD|234199 TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Score = 61.8 bits (151), Expect = 2e-10
Identities = 60/210 (28%), Positives = 91/210 (43%), Gaps = 24/210 (11%)
Query: 632 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG---RKTGGYITGNITISGYPKKQETFA 688
L GVS G +T ++G +G GKTTL+ L G K+G I+ P
Sbjct: 16 LRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLP----PHE 71
Query: 689 RIS---GYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQ 745
R Y Q P +T+ E+LL R I + E+ EL P+ +
Sbjct: 72 RARAGIAYVPQGREIFPRLTVEENLLTGLAAL-------PRRSRKIPD--EIYELFPVLK 122
Query: 746 SLVGLPGVSG-LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT 804
++G G G LS Q+++L IA LV P ++ +DEPT G+ + R +R
Sbjct: 123 EMLGRRG--GDLSGGQQQQLAIARALVTRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAE 180
Query: 805 GRTVVCTIHQPSIDI-FEAFDELFLMKRGG 833
G + + Q +D E D ++M+RG
Sbjct: 181 GGMAILLVEQ-YLDFARELADRYYVMERGR 209
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 230 |
| >gnl|CDD|172760 PRK14272, PRK14272, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 62.0 bits (150), Expect = 2e-10
Identities = 59/201 (29%), Positives = 93/201 (46%), Gaps = 29/201 (14%)
Query: 634 GVSGAFRPGVLTALMGVSGAGKTTLM---DVLAGRKTGGYITGNITISG---YPKKQETF 687
V+ + G + AL+G SG GKTT + + + G +TG I + G Y + +
Sbjct: 22 NVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDPV 81
Query: 688 A--RISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLR- 744
A R G Q P ++++++++ A L+L+ D D +ME+ E LR
Sbjct: 82 AMRRRVGMVFQKPNPFPTMSVFDNVV--AGLKLAGIRDR-------DHLMEVAE-RSLRG 131
Query: 745 -------QSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV--M 795
+ + P +GLS Q++RL IA L P I+ MDEPTS LD + A + +
Sbjct: 132 AALWDEVKDRLKTPA-TGLSGGQQQRLCIARALAVEPEILLMDEPTSALDPASTARIEDL 190
Query: 796 RTVRNTVDTGRTVVCTIHQPS 816
T V T V +HQ +
Sbjct: 191 MTDLKKVTTIIIVTHNMHQAA 211
|
Length = 252 |
| >gnl|CDD|183077 PRK11288, araG, L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 63.8 bits (156), Expect = 3e-10
Identities = 61/224 (27%), Positives = 93/224 (41%), Gaps = 50/224 (22%)
Query: 632 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARIS 691
L+ +S R G + ALMG +GAGK+TL+ +L+G G+I I G + FA +
Sbjct: 20 LDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPD--AGSILIDGQEMR---FASTT 74
Query: 692 GYCEQNDIHSPFVTIYESLLFSAWLRLSPE------------------VDSETRKMFIDE 733
+ + IY+ L L PE V+ R++ E
Sbjct: 75 -----AALAAGVAIIYQEL------HLVPEMTVAENLYLGQLPHKGGIVN---RRLLNYE 120
Query: 734 VMEL-----VELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 788
E V+++P + LS QR+ + IA L N +I DEPTS L A
Sbjct: 121 AREQLEHLGVDIDPDTP-------LKYLSIGQRQMVEIAKALARNARVIAFDEPTSSLSA 173
Query: 789 RAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 832
R + R +R GR ++ H+ +IF D + + K G
Sbjct: 174 REIEQLFRVIRELRAEGRVILYVSHRME-EIFALCDAITVFKDG 216
|
Length = 501 |
| >gnl|CDD|213217 cd03250, ABCC_MRP_domain1, ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C | Back alignment and domain information |
|---|
Score = 60.9 bits (149), Expect = 3e-10
Identities = 47/215 (21%), Positives = 92/215 (42%), Gaps = 44/215 (20%)
Query: 631 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYPKKQETFA 688
L ++ G L A++G G+GK++L+ L G K G ++ +I+
Sbjct: 20 TLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPGSIA---------- 69
Query: 689 RISGYCEQNDIHSPFV---TIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP-LR 744
Y Q P++ TI E++LF D E ++V++ L P L
Sbjct: 70 ----YVSQ----EPWIQNGTIRENILFGK------PFDEE----RYEKVIKACALEPDLE 111
Query: 745 ------QSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR-AAAIVMRT 797
+ +G G++ LS Q++R+++A + ++ I +D+P S +DA I
Sbjct: 112 ILPDGDLTEIGEKGIN-LSGGQKQRISLARAVYSDADIYLLDDPLSAVDAHVGRHIFENC 170
Query: 798 VRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 832
+ + +T + HQ + + D++ ++ G
Sbjct: 171 ILGLLLNNKTRILVTHQ--LQLLPHADQIVVLDNG 203
|
This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 204 |
| >gnl|CDD|224026 COG1101, PhnK, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 62.0 bits (151), Expect = 3e-10
Identities = 53/193 (27%), Positives = 83/193 (43%), Gaps = 30/193 (15%)
Query: 620 KVQG-VLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGR--KTGGYIT---G 673
K + LNG+S G ++G +GAGK+TL++ +AG T G I
Sbjct: 9 KTFFKGTPLEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGV 68
Query: 674 NITISGYPKKQETFARI-----SGYCEQNDIHSPFVTIYESLLFSAWLR-----LSPEVD 723
++T K+ AR+ +G P +TI E+L A R LS ++
Sbjct: 69 DVTKKSVAKRANLLARVFQDPLAGTA-------PELTIEENLAL-AESRGKKRGLSSALN 120
Query: 724 SETRKMFIDEVMELVE-LNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEP 782
R F + + L L +GL LS QR+ L++ + + P I+ +DE
Sbjct: 121 ERRRSSFRERLARLGLGLENRLSDRIGL-----LSGGQRQALSLLMATLHPPKILLLDEH 175
Query: 783 TSGLDARAAAIVM 795
T+ LD + A VM
Sbjct: 176 TAALDPKTAEFVM 188
|
Length = 263 |
| >gnl|CDD|213198 cd03231, ABC_CcmA_heme_exporter, Cytochrome c biogenesis ATP-binding export protein | Back alignment and domain information |
|---|
Score = 60.6 bits (147), Expect = 3e-10
Identities = 48/191 (25%), Positives = 78/191 (40%), Gaps = 18/191 (9%)
Query: 627 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYPKKQ 684
D L +G+S G + G +G+GKTTL+ +LAG G + N ++
Sbjct: 11 DGRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGG--PLDFQR 68
Query: 685 ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLR 744
++ AR Y +++ E+L F + E ++E + V LN
Sbjct: 69 DSIARGLLYLGHAPGIKTTLSVLENLRF-----WHADHSDEQ----VEEALARVGLNGFE 119
Query: 745 QSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT 804
V LS Q++R+ +A L++ + +DEPT+ LD A +
Sbjct: 120 DRPVA-----QLSAGQQRRVALARLLLSGRPLWILDEPTTALDKAGVARFAEAMAGHCAR 174
Query: 805 GRTVVCTIHQP 815
G VV T HQ
Sbjct: 175 GGMVVLTTHQD 185
|
CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperon that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. Length = 201 |
| >gnl|CDD|213218 cd03251, ABCC_MsbA, ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 61.1 bits (149), Expect = 4e-10
Identities = 59/220 (26%), Positives = 95/220 (43%), Gaps = 30/220 (13%)
Query: 626 EDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQE 685
D +L +S G AL+G SG+GK+TL++++ + +G I I G+ +
Sbjct: 12 GDGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIP--RFYDVDSGRILIDGHDVRDY 69
Query: 686 TFA---RISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP 742
T A R G Q D+ T+ E++ + P E EV E
Sbjct: 70 TLASLRRQIGLVSQ-DVFLFNDTVAENIAYGR-----PGATRE-------EVEEAARAAN 116
Query: 743 LRQSLVGLP-------GVSG--LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAI 793
+ ++ LP G G LS QR+R+ IA L+ +P I+ +DE TS LD + +
Sbjct: 117 AHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPILILDEATSALDTESERL 176
Query: 794 VMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGG 833
V + + RT H+ S I A D + +++ G
Sbjct: 177 VQAALERLMK-NRTTFVIAHRLST-IENA-DRIVVLEDGK 213
|
MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 234 |
| >gnl|CDD|236554 PRK09536, btuD, corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 62.9 bits (153), Expect = 4e-10
Identities = 54/210 (25%), Positives = 91/210 (43%), Gaps = 18/210 (8%)
Query: 631 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP----KKQET 686
+L+GV + R G L L+G +GAGKTTL+ + G T G + ++G +
Sbjct: 18 VLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPT--AGTVLVAGDDVEALSARAA 75
Query: 687 FARISGYCEQNDIHSPFV--TIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLR 744
R++ + + F + E R +++ ++ ME +
Sbjct: 76 SRRVASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAA--VERAMERTGVA--- 130
Query: 745 QSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT 804
P V+ LS +R+R+ +A L ++ +DEPT+ LD + VR VD
Sbjct: 131 -QFADRP-VTSLSGGERQRVLLARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVDD 188
Query: 805 GRTVVCTIHQPSIDIFEAF-DELFLMKRGG 833
G+T V IH +D+ + DEL L+ G
Sbjct: 189 GKTAVAAIH--DLDLAARYCDELVLLADGR 216
|
Length = 402 |
| >gnl|CDD|233596 TIGR01846, type_I_sec_HlyB, type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Score = 63.6 bits (155), Expect = 4e-10
Identities = 60/225 (26%), Positives = 97/225 (43%), Gaps = 42/225 (18%)
Query: 626 EDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ- 684
D +L+ ++ +PG ++G SG+GK+TL +L T + G + + G
Sbjct: 467 PDSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQH--GQVLVDGVDLAIA 524
Query: 685 --ETFARISGYCEQNDIHSPFVTIYESLLFSAWLR-----LSPEVDSETRKMFIDEVMEL 737
R G V + E++LFS +R +P E V+
Sbjct: 525 DPAWLRRQMG-----------VVLQENVLFSRSIRDNIALCNPGAPFE-------HVIHA 566
Query: 738 VELNPLRQSLVGLP----------GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 787
+L + LP G LS QR+R+ IA LV NP I+ DE TS LD
Sbjct: 567 AKLAGAHDFISELPQGYNTEVGEKGA-NLSGGQRQRIAIARALVGNPRILIFDEATSALD 625
Query: 788 ARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 832
+ A++MR +R + GRTV+ H+ + A D + ++++G
Sbjct: 626 YESEALIMRNMR-EICRGRTVIIIAHR--LSTVRACDRIIVLEKG 667
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 694 |
| >gnl|CDD|182561 PRK10575, PRK10575, iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 61.3 bits (149), Expect = 6e-10
Identities = 62/217 (28%), Positives = 101/217 (46%), Gaps = 16/217 (7%)
Query: 630 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ---ET 686
LL+ +S F G +T L+G +G+GK+TL+ +L GR G I + P + +
Sbjct: 25 TLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKML-GRHQPPS-EGEILLDAQPLESWSSKA 82
Query: 687 FARISGYCEQNDIHSPFVTIYESLLFS--AWLRLSPEVDSETRKMFIDEVMELVELNPLR 744
FAR Y Q + +T+ E + W + R+ ++E + LV L PL
Sbjct: 83 FARKVAYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREK-VEEAISLVGLKPLA 141
Query: 745 QSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV-RNTVD 803
LV LS +R+R IA+ + + + +DEPTS LD V+ V R + +
Sbjct: 142 HRLV-----DSLSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQE 196
Query: 804 TGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGP 840
G TV+ +H I++ + + + RGG+ I G
Sbjct: 197 RGLTVIAVLH--DINMAARYCDYLVALRGGEMIAQGT 231
|
Length = 265 |
| >gnl|CDD|226628 COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 62.0 bits (151), Expect = 6e-10
Identities = 45/159 (28%), Positives = 75/159 (47%), Gaps = 34/159 (21%)
Query: 641 PGVLTALMGVSGAGKTTLMDVLAG--RKTGGYI----------TGNITISGYPKKQETFA 688
G+ TAL G SG+GKT+L++++AG R G I I + P ++
Sbjct: 24 RGI-TALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFL---PPEKR--- 76
Query: 689 RISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLV 748
RI GY Q+ P T+ +L + W ++ + D+++ L+ + L L
Sbjct: 77 RI-GYVFQDARLFPHYTVRGNLRYGMW---------KSMRAQFDQLVALLGIEHL---LD 123
Query: 749 GLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 787
PG LS +++R+ I L+ P ++ MDEP + LD
Sbjct: 124 RYPGT--LSGGEKQRVAIGRALLTAPELLLMDEPLASLD 160
|
Length = 352 |
| >gnl|CDD|188099 TIGR00972, 3a0107s01c2, phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 60.4 bits (147), Expect = 8e-10
Identities = 55/186 (29%), Positives = 83/186 (44%), Gaps = 46/186 (24%)
Query: 632 LNGVSGAFRPGVLTALMGVSGAGKTTLM-------DVLAGRKTGGYITGNITISG---YP 681
L ++ +TAL+G SG GK+TL+ D++ G + I G + G Y
Sbjct: 17 LKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVR----IEGKVLFDGQDIYD 72
Query: 682 KKQETFA---RISGYCEQNDIHSPF-VTIYESLLFSAWLRLSPEVDSETRKMFIDEVMEL 737
KK + R+ G Q +PF ++IY+++ + RL D K +DE++E
Sbjct: 73 KKIDVVELRRRV-GMVFQKP--NPFPMSIYDNIAYG--PRLHGIKD----KKELDEIVE- 122
Query: 738 VELNPLRQSL--VGLPG-VS--------GLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 786
+SL L V GLS Q++RL IA L P ++ +DEPTS L
Sbjct: 123 -------ESLKKAALWDEVKDRLHDSALGLSGGQQQRLCIARALAVEPEVLLLDEPTSAL 175
Query: 787 DARAAA 792
D A
Sbjct: 176 DPIATG 181
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters [Transport and binding proteins, Anions]. Length = 247 |
| >gnl|CDD|213184 cd03217, ABC_FeS_Assembly, ABC-type transport system involved in Fe-S cluster assembly, ATPase component | Back alignment and domain information |
|---|
Score = 59.5 bits (145), Expect = 8e-10
Identities = 50/216 (23%), Positives = 81/216 (37%), Gaps = 47/216 (21%)
Query: 631 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARI 690
+L GV+ + G + ALMG +G+GK+TL + G G I G
Sbjct: 15 ILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKG----------- 63
Query: 691 SGYCEQNDIHSPFVTIYESL---LFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSL 747
DI + E +F A+ PE+ F+ V E
Sbjct: 64 ------EDITD--LPPEERARLGIFLAFQY-PPEIPGVKNADFLRYVNE----------- 103
Query: 748 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT 807
G S ++KR I L+ P + +DEP SGLD A +V + + G++
Sbjct: 104 -------GFSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREEGKS 156
Query: 808 VVCTIHQPSIDIFEAFDELFLM------KRGGQEIY 837
V+ H + + D + ++ K G +E+
Sbjct: 157 VLIITHYQRLLDYIKPDRVHVLYDGRIVKSGDKELA 192
|
Biosynthesis of iron-sulfur clusters (Fe-S) depends on multi-protein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. Length = 200 |
| >gnl|CDD|188208 TIGR02323, CP_lyasePhnK, phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Score = 59.8 bits (145), Expect = 2e-09
Identities = 58/213 (27%), Positives = 95/213 (44%), Gaps = 20/213 (9%)
Query: 633 NGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISG 692
VS PG + ++G SG+GK+TL+ LAGR G T + ++S
Sbjct: 20 RDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPD--HGTATYIMRSGAELELYQLSE 77
Query: 693 YCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFI------------DEVMELVEL 740
+ + + + ++++ +R+S + R M I + +E VE+
Sbjct: 78 AERRRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARHYGNIRATAQDWLEEVEI 137
Query: 741 NPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN 800
+P R + LP S ++RL IA LV P ++FMDEPT GLD A ++ +R
Sbjct: 138 DPTR--IDDLP--RAFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRG 193
Query: 801 TV-DTGRTVVCTIHQPSIDIFEAFDELFLMKRG 832
V D G V+ H + A L +M++G
Sbjct: 194 LVRDLGLAVIIVTHDLGVARLLA-QRLLVMQQG 225
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se [Central intermediary metabolism, Phosphorus compounds]. Length = 253 |
| >gnl|CDD|213265 cd03298, ABC_ThiQ_thiamine_transporter, ATP-binding cassette domain of the thiamine transport system | Back alignment and domain information |
|---|
Score = 58.7 bits (142), Expect = 2e-09
Identities = 53/206 (25%), Positives = 98/206 (47%), Gaps = 31/206 (15%)
Query: 638 AFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFAR--ISGYCE 695
F G +TA++G SG+GK+TL++++AG +T +G + I+G A +S +
Sbjct: 20 TFAQGEITAIVGPSGSGKSTLLNLIAGFETPQ--SGRVLINGVDVTAAPPADRPVSMLFQ 77
Query: 696 QNDIHSPFVTIYES--LLFSAWLRLSPE----VDSETRKMFIDEVMELVELNPLRQSLVG 749
+N++ +T+ ++ L S L+L+ E ++ ++ + + R
Sbjct: 78 ENNLF-AHLTVEQNVGLGLSPGLKLTAEDRQAIEVALARVGLAGLE-------KR----- 124
Query: 750 LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD-ARAAAIVMRTVRNTV--DTGR 806
LPG LS +R+R+ +A LV + ++ +DEP + LD A A M + + +T
Sbjct: 125 LPGE--LSGGERQRVALARVLVRDKPVLLLDEPFAALDPALRAE--MLDLVLDLHAETKM 180
Query: 807 TVVCTIHQPSIDIFEAFDELFLMKRG 832
TV+ HQP D + + G
Sbjct: 181 TVLMVTHQPE-DAKRLAQRVVFLDNG 205
|
Part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|224044 COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 59.6 bits (145), Expect = 2e-09
Identities = 50/211 (23%), Positives = 87/211 (41%), Gaps = 14/211 (6%)
Query: 631 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGR--KTGGYITGNITISGYPKKQETFA 688
+L +S PG A++G +GAGKTTL+ +L G + G +T G +
Sbjct: 46 ILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLLGRRFGKGETIFELR 105
Query: 689 RISGYC--EQNDIHSPFVTIYESLL--FSAWLRLSPEVDSETRKMFIDEVMELVELNPLR 744
+ G E ++ T+ + +L F A + + E + ++EL+ L
Sbjct: 106 KRIGLVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGAKHLA 165
Query: 745 QSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR--NTV 802
G LS +++R+ IA LV +P ++ +DEP GLD A ++ +
Sbjct: 166 DRPFG-----SLSQGEQRRVLIARALVKDPELLILDEPAQGLDLIAREQLLNRLEELAAS 220
Query: 803 DTGRTVVCTIHQPSIDIFEAFDELFLMKRGG 833
++ H +I F L+K G
Sbjct: 221 PGAPALLFVTHHAE-EIPPCFTHRLLLKEGE 250
|
Length = 257 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 60.7 bits (148), Expect = 3e-09
Identities = 49/218 (22%), Positives = 77/218 (35%), Gaps = 55/218 (25%)
Query: 583 AEAEASRPKKKGMVLPFEPHS-----LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSG 637
E K P L F+ V D +LL +S
Sbjct: 296 EERPVEEGKPLAFRFPPPGKRLGKLVLEFENVSKGYD------------GGRLLLKDLSF 343
Query: 638 AFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQN 697
G A++G +GAGK+TL+ +LAG G ++G + + G K GY +Q+
Sbjct: 344 RIDRGDRIAIVGPNGAGKSTLLKLLAG--ELGPLSGTVKV-GETVK-------IGYFDQH 393
Query: 698 DIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSL--VGLPG--- 752
+T + E + +R L G G
Sbjct: 394 --------------RDELD------PDKTVLEELSEGFPDGDEQEVRAYLGRFGFTGEDQ 433
Query: 753 ---VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 787
V LS ++ RL +A L+ P+++ +DEPT+ LD
Sbjct: 434 EKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLD 471
|
Length = 530 |
| >gnl|CDD|172743 PRK14255, PRK14255, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 58.8 bits (142), Expect = 3e-09
Identities = 53/171 (30%), Positives = 80/171 (46%), Gaps = 26/171 (15%)
Query: 632 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKT---GGYITGNITISG---YPKKQE 685
L G+ F +TAL+G SG GK+T + L G ITGN+++ G Y ++
Sbjct: 21 LKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNED 80
Query: 686 T--FARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPL 743
+ G Q PF +IYE++++ LRL+ D K +DE +E L
Sbjct: 81 VVQLRKQVGMVFQQPNPFPF-SIYENVIYG--LRLAGVKD----KAVLDEAVE----TSL 129
Query: 744 RQSLVG-------LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 787
+Q+ + LS Q++R+ IA L P +I +DEPTS LD
Sbjct: 130 KQAAIWDEVKDHLHESALSLSGGQQQRVCIARVLAVKPDVILLDEPTSALD 180
|
Length = 252 |
| >gnl|CDD|184203 PRK13643, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 59.0 bits (142), Expect = 3e-09
Identities = 56/201 (27%), Positives = 98/201 (48%), Gaps = 18/201 (8%)
Query: 640 RPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYI-TGNITISGYPKKQET--FARISGYC 694
+ G TAL+G +G+GK+TL+ L G + T G + G+I +S K++E + G
Sbjct: 30 KKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKPVRKKVGVV 89
Query: 695 EQNDIHSPFVTIYESLLFSAWLRLSPE---VDSETRKMFIDEVMELVELNPLRQSLVGLP 751
Q P ++E + + P+ + E + E +E+V L + P
Sbjct: 90 FQ----FPESQLFEETVLKD-VAFGPQNFGIPKEKAEKIAAEKLEMVGLA--DEFWEKSP 142
Query: 752 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCT 811
LS Q +R+ IA L P ++ +DEPT+GLD +A +M+ + +G+TVV
Sbjct: 143 --FELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLV 200
Query: 812 IHQPSIDIFEAFDELFLMKRG 832
H D+ + D ++L+++G
Sbjct: 201 THLMD-DVADYADYVYLLEKG 220
|
Length = 288 |
| >gnl|CDD|236870 PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 60.2 bits (147), Expect = 4e-09
Identities = 53/214 (24%), Positives = 102/214 (47%), Gaps = 29/214 (13%)
Query: 630 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYI--TGNITISGYPKKQ--- 684
L ++ G AL+G SGAGKT+L++ L G ++ G++ I+G ++
Sbjct: 364 TLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLG-----FLPYQGSLKINGIELRELDP 418
Query: 685 ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP-L 743
E++ + + QN P T+ +++L P+ E + + +E ++ L
Sbjct: 419 ESWRKHLSWVGQNP-QLPHGTLRDNVLLGN-----PDASDEQ----LQQALENAWVSEFL 468
Query: 744 RQSLVGL-----PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV 798
GL +GLS Q +RL +A L+ ++ +DEPT+ LDA + +VM+ +
Sbjct: 469 PLLPQGLDTPIGDQAAGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQAL 528
Query: 799 RNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 832
N +T + HQ ++ +D++++M+ G
Sbjct: 529 -NAASRRQTTLMVTHQ--LEDLAQWDQIWVMQDG 559
|
Length = 588 |
| >gnl|CDD|234189 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Score = 60.3 bits (147), Expect = 5e-09
Identities = 54/198 (27%), Positives = 90/198 (45%), Gaps = 28/198 (14%)
Query: 632 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYPKKQ---ET 686
L+ VS RPG A++G G+GK+TL+ +L G + T G ++ + G +Q
Sbjct: 481 LDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEG----SVLLDGVDIRQIDPAD 536
Query: 687 FARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQS 746
R GY Q D + T+ +++ A P D E I EL + +
Sbjct: 537 LRRNIGYVPQ-DPRLFYGTLRDNIALGA-----PYADDEE----ILRAAELAGVTEFVRR 586
Query: 747 -------LVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 799
+G G LS QR+ + +A L+ +P I+ +DEPTS +D R+ ++
Sbjct: 587 HPDGLDMQIGERGR-SLSGGQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLK 645
Query: 800 NTVDTGRTVVCTIHQPSI 817
+ G+T+V H+ S+
Sbjct: 646 RWL-AGKTLVLVTHRTSL 662
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]. Length = 694 |
| >gnl|CDD|233665 TIGR01978, sufC, FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Score = 58.0 bits (141), Expect = 5e-09
Identities = 51/207 (24%), Positives = 85/207 (41%), Gaps = 26/207 (12%)
Query: 626 EDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQE 685
EDK +L GV+ + G + A+MG +G+GK+TL +AG + +G I G Q+
Sbjct: 11 EDKEIL-KGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKG----QD 65
Query: 686 TF-------ARISGYCE-QNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMF-----ID 732
AR + Q P V+ E L + R S + E + +
Sbjct: 66 LLELEPDERARAGLFLAFQYPEEIPGVSNLEFLRSALNARRSARGE-EPLDLLDFLKLLK 124
Query: 733 EVMELVELNP--LRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARA 790
+ L+ ++ L +S+ G S ++KR I + P + +DE SGLD A
Sbjct: 125 AKLALLGMDEEFLNRSV-----NEGFSGGEKKRNEILQMALLEPKLAILDEIDSGLDIDA 179
Query: 791 AAIVMRTVRNTVDTGRTVVCTIHQPSI 817
IV + + R+ + H +
Sbjct: 180 LKIVAEGINRLREPDRSFLIITHYQRL 206
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PMID:12554644) or associated with the membrane (PMID:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 243 |
| >gnl|CDD|184132 PRK13547, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 57.9 bits (140), Expect = 8e-09
Identities = 54/215 (25%), Positives = 87/215 (40%), Gaps = 27/215 (12%)
Query: 624 VLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGY------ITGNITI 677
V +L +S PG +TAL+G +GAGK+TL+ LAG TGG +TG++T+
Sbjct: 9 VARRHRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTL 68
Query: 678 SGYPKKQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAW--LRLSPEVDSETRKMFID 732
+G P AR+ Q + + E +L + R + + ++
Sbjct: 69 NGEPLAAIDAPRLARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEI-AW 127
Query: 733 EVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVEL---------VANPSIIFMDEPT 783
+ + L L V+ LS + R+ A L P + +DEPT
Sbjct: 128 QALALAGATALVGR-----DVTTLSGGELARVQFARVLAQLWPPHDAAQPPRYLLLDEPT 182
Query: 784 SGLDARAAAIVMRTVRNTVDTGRTVVCTI-HQPSI 817
+ LD ++ TVR V I H P++
Sbjct: 183 AALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPNL 217
|
Length = 272 |
| >gnl|CDD|213225 cd03258, ABC_MetN_methionine_transporter, ATP-binding cassette domain of methionine transporter | Back alignment and domain information |
|---|
Score = 57.2 bits (139), Expect = 8e-09
Identities = 56/204 (27%), Positives = 95/204 (46%), Gaps = 21/204 (10%)
Query: 620 KVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISG 679
KV G K+ L VS + G + ++G SGAGK+TL+ + G + +G++ + G
Sbjct: 9 KVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLER--PTSGSVLVDG 66
Query: 680 Y------PKKQETFARISGYCEQ--NDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFI 731
K+ R G Q N + S T++E++ + P+ + E R +
Sbjct: 67 TDLTLLSGKELRKARRRIGMIFQHFNLLSSR--TVFENVALPLEIAGVPKAEIEER---V 121
Query: 732 DEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA 791
E++ELV L + P + LS Q++R+ IA L NP ++ DE TS LD
Sbjct: 122 LELLELVGLEDKADAY---P--AQLSGGQKQRVGIARALANNPKVLLCDEATSALDPETT 176
Query: 792 AIVMRTVRNT-VDTGRTVVCTIHQ 814
++ +R+ + G T+V H+
Sbjct: 177 QSILALLRDINRELGLTIVLITHE 200
|
MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 233 |
| >gnl|CDD|227590 COG5265, ATM1, ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 59.3 bits (144), Expect = 9e-09
Identities = 62/223 (27%), Positives = 101/223 (45%), Gaps = 26/223 (11%)
Query: 630 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGY---PKKQET 686
+LNG+S G A++G SGAGK+T++ +L +G+ITI G Q++
Sbjct: 277 PILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVN--SGSITIDGQDIRDVTQQS 334
Query: 687 FARISGYCEQ-----NDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELN 741
R G Q ND TI ++ + + EV + I + ++ L
Sbjct: 335 LRRAIGIVPQDTVLFND------TIAYNIKYGRPDATAEEVGAAAEAAQIHDFIQ--SLP 386
Query: 742 PLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT 801
+ VG G+ LS +++R+ IA ++ NP I+ +DE TS LD + +R
Sbjct: 387 EGYDTGVGERGLK-LSGGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQAALRE- 444
Query: 802 VDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLGRH 844
V GRT + H+ S I +A DE+ ++ G + G H
Sbjct: 445 VSAGRTTLVIAHRLST-IIDA-DEIIVLDNG----RIVERGTH 481
|
Length = 497 |
| >gnl|CDD|213215 cd03248, ABCC_TAP, ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C | Back alignment and domain information |
|---|
Score = 56.7 bits (137), Expect = 1e-08
Identities = 61/201 (30%), Positives = 94/201 (46%), Gaps = 31/201 (15%)
Query: 627 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYPKKQ 684
D LVL VS PG +TAL+G SG+GK+T++ +L + GG + + G P
Sbjct: 26 DTLVL-QDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGG----QVLLDGKP--- 77
Query: 685 ETFARISGYCEQNDIHSPFVTI-YESLLFSAWLRLSPEVDSETRKMFIDEVMELV----- 738
IS Y E +HS + E +LF+ L+ + ++ + V E
Sbjct: 78 -----ISQY-EHKYLHSKVSLVGQEPVLFARSLQDNIAYGLQSCSF--ECVKEAAQKAHA 129
Query: 739 -----ELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAI 793
EL + VG G S LS Q++R+ IA L+ NP ++ +DE TS LDA +
Sbjct: 130 HSFISELASGYDTEVGEKG-SQLSGGQKQRVAIARALIRNPQVLILDEATSALDAESEQQ 188
Query: 794 VMRTVRNTVDTGRTVVCTIHQ 814
V + + + RTV+ H+
Sbjct: 189 VQQALYDW-PERRTVLVIAHR 208
|
TAP (Transporter Associated with Antigen Processing) is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. Length = 226 |
| >gnl|CDD|237457 PRK13647, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 57.4 bits (139), Expect = 1e-08
Identities = 51/188 (27%), Positives = 81/188 (43%), Gaps = 18/188 (9%)
Query: 632 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARIS 691
L G+S + G TAL+G +GAGK+TL+ L G G + + G E +
Sbjct: 21 LKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQ--RGRVKVMGREVNAENEKWVR 78
Query: 692 ---GYCEQNDIHSPFV-TIYESLLFSAW-LRLSP-EVDSETRKMFIDEVMELVELNPLRQ 745
G Q+ F T+++ + F + L EV+ E ++ V + R
Sbjct: 79 SKVGLVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRVE-----EALKAVRMWDFRD 133
Query: 746 SLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTG 805
LS Q+KR+ IA L +P +I +DEP + LD R +M + + G
Sbjct: 134 K-----PPYHLSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQG 188
Query: 806 RTVVCTIH 813
+TV+ H
Sbjct: 189 KTVIVATH 196
|
Length = 274 |
| >gnl|CDD|213211 cd03244, ABCC_MRP_domain2, ATP-binding cassette domain 2 of multidrug resistance-associated protein | Back alignment and domain information |
|---|
Score = 56.3 bits (137), Expect = 1e-08
Identities = 52/198 (26%), Positives = 84/198 (42%), Gaps = 37/198 (18%)
Query: 632 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGR---KTGGYIT-GNITISGYPKKQETF 687
L +S + +PG ++G +G+GK++L+ L R + G I + IS
Sbjct: 20 LKNISFSIKPGEKVGIVGRTGSGKSSLLLALF-RLVELSSGSILIDGVDISKIGLH---- 74
Query: 688 ARISGYCEQNDIHSPFVTI-YESLLFSAWLR--LSPE---VDSETRKMFIDEVMELVELN 741
D+ S I + +LFS +R L P D E + + +E V L
Sbjct: 75 ----------DLRSRISIIPQDPVLFSGTIRSNLDPFGEYSDEE-----LWQALERVGLK 119
Query: 742 PLRQSLV-GLPGV-----SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM 795
+SL GL V LS QR+ L +A L+ I+ +DE T+ +D A++
Sbjct: 120 EFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQ 179
Query: 796 RTVRNTVDTGRTVVCTIH 813
+T+R TV+ H
Sbjct: 180 KTIR-EAFKDCTVLTIAH 196
|
The ABC subfamily C is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 221 |
| >gnl|CDD|213229 cd03262, ABC_HisP_GlnQ, ATP-binding cassette domain of the histidine and glutamine transporters | Back alignment and domain information |
|---|
Score = 56.0 bits (136), Expect = 2e-08
Identities = 47/196 (23%), Positives = 86/196 (43%), Gaps = 22/196 (11%)
Query: 628 KLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GNITISGYPKKQ 684
+L G+ + G + ++G SG+GK+TL+ + G I + ++ K
Sbjct: 12 DFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNI 71
Query: 685 ETFARISGYCEQNDIHSPFVTIYESLLFS-AWLRLSPEVDSETRKMFIDEVMELVELNPL 743
+ G Q P +T+ E++ + ++ + ++E R +EL+E
Sbjct: 72 NELRQKVGMVFQQFNLFPHLTVLENITLAPIKVKGMSKAEAEER------ALELLEK--- 122
Query: 744 RQSLVGLPGV-----SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV 798
VGL + LS Q++R+ IA L NP ++ DEPTS LD V+ +
Sbjct: 123 ----VGLADKADAYPAQLSGGQQQRVAIARALAMNPKVMLFDEPTSALDPELVGEVLDVM 178
Query: 799 RNTVDTGRTVVCTIHQ 814
++ + G T+V H+
Sbjct: 179 KDLAEEGMTMVVVTHE 194
|
HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, respectively. Histidine permease is a multi-subunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryotic extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQMP system of S. typhimurium, where HisJ is the extracellular solute binding proteins and HisP is the ABC protein. Length = 213 |
| >gnl|CDD|172735 PRK14247, PRK14247, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 56.5 bits (136), Expect = 2e-08
Identities = 52/186 (27%), Positives = 83/186 (44%), Gaps = 44/186 (23%)
Query: 631 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARI 690
+L+GV+ +TALMG SG+GK+TL+ V N I YP+ AR+
Sbjct: 18 VLDGVNLEIPDNTITALMGPSGSGKSTLLRVF-----------NRLIELYPE-----ARV 61
Query: 691 SG--YCEQNDIHS--------------------PFVTIYESLLFSAWLRLSPEVDSETRK 728
SG Y + DI P ++I+E++ L+L+ V S+ ++
Sbjct: 62 SGEVYLDGQDIFKMDVIELRRRVQMVFQIPNPIPNLSIFENVALG--LKLNRLVKSK-KE 118
Query: 729 MF--IDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 786
+ + +E +L + + P LS Q++RL IA L P ++ DEPT+ L
Sbjct: 119 LQERVRWALEKAQLWDEVKDRLDAPAGK-LSGGQQQRLCIARALAFQPEVLLADEPTANL 177
Query: 787 DARAAA 792
D A
Sbjct: 178 DPENTA 183
|
Length = 250 |
| >gnl|CDD|224051 COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 56.4 bits (137), Expect = 2e-08
Identities = 53/194 (27%), Positives = 86/194 (44%), Gaps = 27/194 (13%)
Query: 632 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYPKKQETFAR 689
L G+S + G + ++G SG+GK+TL+ L G G IT + G K R
Sbjct: 18 LKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRR 77
Query: 690 ISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEV----MELVELNPLRQ 745
G Q P +T+ E++ L+P +K+ E +EL+E
Sbjct: 78 KVGMVFQQFNLFPHLTVLENVT------LAPVK---VKKLSKAEAREKALELLEK----- 123
Query: 746 SLVGLPGV-----SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN 800
VGL + LS Q++R+ IA L +P ++ DEPTS LD V+ +++
Sbjct: 124 --VGLADKADAYPAQLSGGQQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKD 181
Query: 801 TVDTGRTVVCTIHQ 814
+ G T++ H+
Sbjct: 182 LAEEGMTMIIVTHE 195
|
Length = 240 |
| >gnl|CDD|130254 TIGR01186, proV, glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Score = 57.6 bits (139), Expect = 2e-08
Identities = 57/218 (26%), Positives = 92/218 (42%), Gaps = 37/218 (16%)
Query: 632 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVL-------AGRKTGGYITG-NITISGYPKK 683
+N A G + +MG+SG+GK+T + +L AG+ +I G NI +
Sbjct: 9 VNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQI---FIDGENIMKQSPVEL 65
Query: 684 QETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPL 743
+E + G Q P +TI ++ L + RK ++ +EL++L
Sbjct: 66 REVRRKKIGMVFQQFALFPHMTILQNTSLGPELL---GWPEQERK---EKALELLKL--- 116
Query: 744 RQSLVGLPGVSG-----LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV 798
VGL LS ++R+ +A L A P I+ MDE S LD + +
Sbjct: 117 ----VGLEEYEHRYPDELSGGMQQRVGLARALAAEPDILLMDEAFSALDPLIRDSMQDEL 172
Query: 799 RNTVDT-GRTVVCTIHQPSIDIFEAF---DELFLMKRG 832
+ T +T+V H D+ EA D + +MK G
Sbjct: 173 KKLQATLQKTIVFITH----DLDEAIRIGDRIVIMKAG 206
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lactis functionally complements an E.coli proU mutant. The comlementing locus is similar to a opuA locus in B.sutlis. This clarifies the differences in nomenclature [Transport and binding proteins, Amino acids, peptides and amines]. Length = 363 |
| >gnl|CDD|172741 PRK14253, PRK14253, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 56.0 bits (135), Expect = 2e-08
Identities = 57/167 (34%), Positives = 79/167 (47%), Gaps = 37/167 (22%)
Query: 644 LTALMGVSGAGKTTLM-------DVLAGRKTGGYITGNITISG---YPKKQETFARIS-G 692
+TAL+G SG GK+TL+ D++ G K ITG +T+ G Y RI G
Sbjct: 31 VTALIGPSGCGKSTLLRCLNRMNDLIEGVK----ITGKLTMDGEDIYGNIDVADLRIKVG 86
Query: 693 YCEQNDIHSPF-VTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLR------- 744
Q +PF ++IYE++ + LR D K +DEV+E LR
Sbjct: 87 MVFQKP--NPFPMSIYENVAYG--LRAQGIKD----KKVLDEVVE----RSLRGAALWDE 134
Query: 745 -QSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARA 790
+ + GLS Q++RL IA + P +I MDEPTS LD A
Sbjct: 135 VKDRLKSHAF-GLSGGQQQRLCIARTIAMEPDVILMDEPTSALDPIA 180
|
Length = 249 |
| >gnl|CDD|226970 COG4619, COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 55.6 bits (134), Expect = 3e-08
Identities = 54/209 (25%), Positives = 89/209 (42%), Gaps = 24/209 (11%)
Query: 615 MPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT 672
M E+K G L +LN +S + R G A+ G SG GK+TL+ ++A T G +
Sbjct: 2 MLLELKQVGYLAGDAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLL 61
Query: 673 --GNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMF 730
G +S K E + + YC Q T+ ++L+F +R R
Sbjct: 62 FEGE-DVSTL--KPEAYRQQVSYCAQTPALFG-DTVEDNLIFPWQIR----NRRPDRAAA 113
Query: 731 IDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARA 790
+D L+ L S++ ++ LS +++R+ + L P I+ +DE TS LD
Sbjct: 114 LD----LLARFALPDSILTKN-ITELSGGEKQRIALIRNLQFMPKILLLDEITSALDESN 168
Query: 791 A----AIVMRTVRNTVDTGRTVVCTIHQP 815
++ R VR + V+ H
Sbjct: 169 KRNIEEMIHRYVR---EQNVAVLWITHDK 194
|
Length = 223 |
| >gnl|CDD|184205 PRK13646, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 56.3 bits (136), Expect = 3e-08
Identities = 64/243 (26%), Positives = 108/243 (44%), Gaps = 35/243 (14%)
Query: 603 SLTFDEV--VYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMD 660
++ FD V Y P E + ++ V+ F G A++G +G+GK+TL+
Sbjct: 2 TIRFDNVSYTYQKGTPYEHQA----------IHDVNTEFEQGKYYAIVGQTGSGKSTLIQ 51
Query: 661 VLAG--RKTGGYIT-GNITISGYPKKQE--TFARISGYCEQNDIHSPFVTIYESLLFSAW 715
+ + T G +T +ITI+ K + + G Q ES LF
Sbjct: 52 NINALLKPTTGTVTVDDITITHKTKDKYIRPVRKRIGMVFQ---------FPESQLFEDT 102
Query: 716 LRLSPEVDSETRKMFIDEVME-----LVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVEL 770
+ + KM +DEV L++L R + P +S Q +++ I L
Sbjct: 103 VEREIIFGPKNFKMNLDEVKNYAHRLLMDLGFSRDVMSQSP--FQMSGGQMRKIAIVSIL 160
Query: 771 VANPSIIFMDEPTSGLDARAAAIVMRTVRN-TVDTGRTVVCTIHQPSIDIFEAFDELFLM 829
NP II +DEPT+GLD ++ VMR +++ D +T++ H + ++ DE+ +M
Sbjct: 161 AMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMN-EVARYADEVIVM 219
Query: 830 KRG 832
K G
Sbjct: 220 KEG 222
|
Length = 286 |
| >gnl|CDD|184587 PRK14241, PRK14241, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 55.9 bits (135), Expect = 3e-08
Identities = 50/174 (28%), Positives = 77/174 (44%), Gaps = 37/174 (21%)
Query: 635 VSGAFRPGVLTALMGVSGAGKTTLMDVLAGRK----TGGYITGNITISG---YPKKQETF 687
V+ P +TA +G SG GK+T++ L R G + G + + G Y +
Sbjct: 23 VNLNIEPRSVTAFIGPSGCGKSTVLRTL-NRMHEVIPGARVEGEVLLDGEDLYGPGVDPV 81
Query: 688 A--RISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQ 745
A R G Q P ++I ++++ A L+L+ K +DE++E +
Sbjct: 82 AVRRTIGMVFQRPNPFPTMSIRDNVV--AGLKLN----GVRNKKDLDELVE--------K 127
Query: 746 SLVG------------LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 787
SL G PG GLS Q++RL IA + P ++ MDEP S LD
Sbjct: 128 SLRGANLWNEVKDRLDKPG-GGLSGGQQQRLCIARAIAVEPDVLLMDEPCSALD 180
|
Length = 258 |
| >gnl|CDD|184127 PRK13540, PRK13540, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 54.2 bits (130), Expect = 5e-08
Identities = 45/187 (24%), Positives = 80/187 (42%), Gaps = 19/187 (10%)
Query: 631 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARI 690
LL +S G L L G +GAGKTTL+ ++AG G I K++
Sbjct: 16 LLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPE--KGEILFERQSIKKDLCTYQ 73
Query: 691 SGYC---EQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSL 747
C ++ I +P++T+ E+ L+ ++ + I E+ L L L
Sbjct: 74 KQLCFVGHRSGI-NPYLTLRENCLY--------DIHFSPGAVGITELCRLFSLEHLIDYP 124
Query: 748 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT 807
GL LS+ Q++++ + ++ + +DEP LD + ++ ++ G
Sbjct: 125 CGL-----LSSGQKRQVALLRLWMSKAKLWLLDEPLVALDELSLLTIITKIQEHRAKGGA 179
Query: 808 VVCTIHQ 814
V+ T HQ
Sbjct: 180 VLLTSHQ 186
|
Length = 200 |
| >gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 56.7 bits (137), Expect = 5e-08
Identities = 63/218 (28%), Positives = 96/218 (44%), Gaps = 34/218 (15%)
Query: 632 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISG--YPKKQETFAR 689
L V+ PG + AL+G +GAGK+TLM VL+G G ITI+ Y K A
Sbjct: 21 LKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPT--KGTITINNINYNKLDHKLAA 78
Query: 690 ISG----YCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQ 745
G Y E + I +T+ E+L R T+K+ +++ E+
Sbjct: 79 QLGIGIIYQELSVIDE--LTVLENLYIG---RHL------TKKVCGVNIIDWREMRVRAA 127
Query: 746 SL---VGL-----PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA---IV 794
+ VGL V+ LS ++ L IA L+ + +I MDEPTS L + ++
Sbjct: 128 MMLLRVGLKVDLDEKVANLSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLI 187
Query: 795 MRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 832
M +R G +V H+ + +I D +MK G
Sbjct: 188 MNQLRK---EGTAIVYISHKLA-EIRRICDRYTVMKDG 221
|
Length = 510 |
| >gnl|CDD|172749 PRK14261, PRK14261, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 54.8 bits (132), Expect = 6e-08
Identities = 53/181 (29%), Positives = 76/181 (41%), Gaps = 36/181 (19%)
Query: 632 LNGVSGAFRPGVLTALMGVSGAGKTTLM-------DVLAG-RKTGGYITGNITISGYPKK 683
L ++ + +TAL+G SG GK+TL+ D++ G R TG + I
Sbjct: 22 LYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGAD 81
Query: 684 QETFARISGYCEQNDIHSPF-VTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP 742
R G Q +PF +IYE++ + P + E K +D ++E
Sbjct: 82 VVALRRKIGMVFQRP--NPFPKSIYENVAYG------PRIHGEKNKKTLDTIVE------ 127
Query: 743 LRQSLVGLP-----------GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA 791
+SL G LS Q++RL IA L NP +I MDEP S LD A
Sbjct: 128 --KSLKGAALWDEVKDRLHDSALSLSGGQQQRLCIARTLAVNPEVILMDEPCSALDPIAT 185
Query: 792 A 792
A
Sbjct: 186 A 186
|
Length = 253 |
| >gnl|CDD|131816 TIGR02769, nickel_nikE, nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Score = 54.8 bits (132), Expect = 6e-08
Identities = 48/177 (27%), Positives = 79/177 (44%), Gaps = 16/177 (9%)
Query: 631 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP------KKQ 684
+L VS + G L+G SG GK+TL +L G + G ++ G K++
Sbjct: 26 VLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPA--QGTVSFRGQDLYQLDRKQR 83
Query: 685 ETFARISGYCEQNDIHS--PFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP 742
F R Q+ + P +T+ + + LR +D +K I E++++V L
Sbjct: 84 RAFRRDVQLVFQDSPSAVNPRMTVRQII--GEPLRHLTSLDESEQKARIAELLDMVGLRS 141
Query: 743 LRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 799
+ LP LS Q +R+ IA L P +I +DE S LD A+++ +R
Sbjct: 142 --EDADKLP--RQLSGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLR 194
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase [Transport and binding proteins, Cations and iron carrying compounds]. Length = 265 |
| >gnl|CDD|237645 PRK14235, PRK14235, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 55.1 bits (133), Expect = 6e-08
Identities = 60/188 (31%), Positives = 87/188 (46%), Gaps = 45/188 (23%)
Query: 632 LNGVSGAFRPGVLTALMGVSGAGKTTLM-------DVLAGRKTGGYITGNITISG---YP 681
L V +TA +G SG GK+T + D + G + +TG IT+ G Y
Sbjct: 35 LFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCR----VTGKITLDGEDIYD 90
Query: 682 KKQ---ETFARISGYCEQNDIHSPF-VTIYESLLFSAWLRLSPEVDSETR-KMFIDEVME 736
+ E AR+ G Q +PF +IYE++ + P + R K +DE++E
Sbjct: 91 PRLDVVELRARV-GMVFQKP--NPFPKSIYENVAYG------PRIHGLARSKAELDEIVE 141
Query: 737 LVELNPLRQSLVGL----------PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 786
LR++ GL PG +GLS Q++RL IA + +P +I MDEP S L
Sbjct: 142 ----TSLRKA--GLWEEVKDRLHEPG-TGLSGGQQQRLCIARAIAVSPEVILMDEPCSAL 194
Query: 787 DARAAAIV 794
D A A V
Sbjct: 195 DPIATAKV 202
|
Length = 267 |
| >gnl|CDD|163483 TIGR03771, anch_rpt_ABC, anchored repeat-type ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 54.1 bits (130), Expect = 7e-08
Identities = 49/186 (26%), Positives = 76/186 (40%), Gaps = 32/186 (17%)
Query: 641 PGVLTALMGVSGAGKTTLMDVLAGRKTGGYI---TGNITISGYPKKQETFARISGYCEQN 697
G L L+G +GAGKTTL+ R G I G + ++G + R GY Q
Sbjct: 5 KGELLGLLGPNGAGKTTLL-----RAILGLIPPAKGTVKVAGASPGKGW--RHIGYVPQR 57
Query: 698 DIHS-----PFVTIYESLL-----FSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSL 747
H P +++ +++ WLR D + + + V L L
Sbjct: 58 --HEFAWDFP-ISVAHTVMSGRTGHIGWLRRPCVADFAA----VRDALRRVGLTELADRP 110
Query: 748 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT 807
VG LS QR+R+ +A L PS++ +DEP +GLD ++ G
Sbjct: 111 VG-----ELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTELFIELAGAGTA 165
Query: 808 VVCTIH 813
++ T H
Sbjct: 166 ILMTTH 171
|
This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown [Transport and binding proteins, Unknown substrate]. Length = 223 |
| >gnl|CDD|172733 PRK14245, PRK14245, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 54.6 bits (131), Expect = 7e-08
Identities = 48/181 (26%), Positives = 83/181 (45%), Gaps = 32/181 (17%)
Query: 632 LNGVSGAFRPGVLTALMGVSGAGKTTLM-------DVLAGRKTGGYITGNITISG---YP 681
L G+S + A +G SG GK+T + D++ + + G I I G Y
Sbjct: 19 LKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATR----LEGEIRIDGRNIYD 74
Query: 682 KKQET--FARISGYCEQNDIHSPF-VTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELV 738
K + + G Q +PF +I+E++ + LR++ D+ + ++E ++
Sbjct: 75 KGVQVDELRKNVGMVFQRP--NPFPKSIFENVAYG--LRVNGVKDNAFIRQRVEETLKGA 130
Query: 739 EL-----NPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAI 793
L + L++S L G Q++RL IA + +PS++ MDEP S LD + A
Sbjct: 131 ALWDEVKDKLKESAFALSG------GQQQRLCIARAMAVSPSVLLMDEPASALDPISTAK 184
Query: 794 V 794
V
Sbjct: 185 V 185
|
Length = 250 |
| >gnl|CDD|213230 cd03263, ABC_subfamily_A, ATP-binding cassette domain of the lipid transporters, subfamily A | Back alignment and domain information |
|---|
Score = 54.0 bits (131), Expect = 8e-08
Identities = 34/124 (27%), Positives = 62/124 (50%), Gaps = 19/124 (15%)
Query: 42 EANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVG-PALALFMDEIST 100
E + L+VLGL A+ +SGG K++++ ++G P++ L +DE ++
Sbjct: 109 EIKEEVELLLRVLGLTDKANKRART-----LSGGMKRKLSLAIALIGGPSV-LLLDEPTS 162
Query: 101 GLDSSTTFQIVNCLRQNIHINSGTAVI----SLLQPAPETYDLFDDIILLSDGQIVYQG- 155
GLD ++ I + + + G ++I S+ E L D I ++SDG++ G
Sbjct: 163 GLDPASRRAIWDLIL---EVRKGRSIILTTHSMD----EAEALCDRIAIMSDGKLRCIGS 215
Query: 156 PREL 159
P+EL
Sbjct: 216 PQEL 219
|
The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. Length = 220 |
| >gnl|CDD|182880 PRK10982, PRK10982, galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 55.9 bits (135), Expect = 8e-08
Identities = 65/227 (28%), Positives = 105/227 (46%), Gaps = 39/227 (17%)
Query: 632 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYPKKQETFAR 689
L+ V+ RP + ALMG +GAGK+TL+ L G +K +G+I G +E +
Sbjct: 14 LDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKD----SGSILFQG----KEIDFK 65
Query: 690 ISGYCEQNDI---HSPFVTIYE-SLLFSAWLRLSPEVDSETRKMFIDE----------VM 735
S +N I H + + S++ + WL P T+ MF+D+
Sbjct: 66 SSKEALENGISMVHQELNLVLQRSVMDNMWLGRYP-----TKGMFVDQDKMYRDTKAIFD 120
Query: 736 EL-VELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV 794
EL ++++P + V+ LS Q + + IA N I+ MDEPTS L + +
Sbjct: 121 ELDIDIDPRAK-------VATLSVSQMQMIEIAKAFSYNAKIVIMDEPTSSLTEKEVNHL 173
Query: 795 MRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPL 841
+R + G +V H+ +IF+ DE+ ++ R GQ I PL
Sbjct: 174 FTIIRKLKERGCGIVYISHKME-EIFQLCDEITIL-RDGQWIATQPL 218
|
Length = 491 |
| >gnl|CDD|183244 PRK11629, lolD, lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 54.1 bits (130), Expect = 8e-08
Identities = 49/168 (29%), Positives = 78/168 (46%), Gaps = 17/168 (10%)
Query: 631 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP-------KK 683
+L+ VS + G + A++G SG+GK+TL+ +L G T +G++ +G P K
Sbjct: 24 VLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTP--TSGDVIFNGQPMSKLSSAAK 81
Query: 684 QETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPL 743
E + G+ Q P T E++ + + +R + E++ V L
Sbjct: 82 AELRNQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEINSRAL---EMLAAVGLEHR 138
Query: 744 RQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA 791
S LS +R+R+ IA LV NP ++ DEPT LDAR A
Sbjct: 139 ANHRP-----SELSGGERQRVAIARALVNNPRLVLADEPTGNLDARNA 181
|
Length = 233 |
| >gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain | Back alignment and domain information |
|---|
Score = 52.6 bits (127), Expect = 9e-08
Identities = 23/70 (32%), Positives = 33/70 (47%), Gaps = 5/70 (7%)
Query: 630 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP---KKQET 686
L+ VS + G + AL+G +G+GK+TL+ +AG +G I I G E
Sbjct: 13 TALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLK--PTSGEILIDGKDIAKLPLEE 70
Query: 687 FARISGYCEQ 696
R GY Q
Sbjct: 71 LRRRIGYVPQ 80
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157 |
| >gnl|CDD|213205 cd03238, ABC_UvrA, ATP-binding cassette domain of the excision repair protein UvrA | Back alignment and domain information |
|---|
Score = 53.1 bits (128), Expect = 9e-08
Identities = 45/225 (20%), Positives = 81/225 (36%), Gaps = 69/225 (30%)
Query: 632 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARIS 691
L + + VL + GVSG+GK+TL+
Sbjct: 11 LQNLDVSIPLNVLVVVTGVSGSGKSTLV-------------------------------- 38
Query: 692 GYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELN----PLRQSL 747
+Y S A L S + +FID++ L+++ L Q L
Sbjct: 39 -----------NEGLYASG--KARLISFLPKFSRNKLIFIDQLQFLIDVGLGYLTLGQKL 85
Query: 748 VGLPGVSGLSTEQRKRLTIAVELVANP--SIIFMDEPTSGLDARAAAIVMRTVRNTVDTG 805
S LS + +R+ +A EL + P ++ +DEP++GL + ++ ++ +D G
Sbjct: 86 ------STLSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLG 139
Query: 806 RTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGP-LGRHSCHLI 849
TV+ H + + I GP G+ ++
Sbjct: 140 NTVILIEHNLDV-----------LSSADWIIDFGPGSGKSGGKVV 173
|
Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. Length = 176 |
| >gnl|CDD|130252 TIGR01184, ntrCD, nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Score = 54.0 bits (130), Expect = 9e-08
Identities = 60/219 (27%), Positives = 99/219 (45%), Gaps = 33/219 (15%)
Query: 632 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGG--YITGN-ITISGYPKKQET 686
L GV+ + G +L+G SG GK+TL+++++G + T G + G IT G P +
Sbjct: 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPG-PDRMVV 59
Query: 687 FARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQS 746
F QN P++T+ E++ A R+ P++ R+ ++E + LV L ++
Sbjct: 60 F--------QNYSLLPWLTVRENIAL-AVDRVLPDLSKSERRAIVEEHIALVG---LTEA 107
Query: 747 LVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DTG 805
PG LS ++R+ IA L P ++ +DEP LDA + + +
Sbjct: 108 ADKRPG--QLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEELMQIWEEHR 165
Query: 806 RTVVCTIHQPSIDIFEAFDELFL-----MKRGGQEIYVG 839
TV+ H D+ EA L L M G +G
Sbjct: 166 VTVLMVTH----DVDEA---LLLSDRVVMLTNGPAANIG 197
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase [Transport and binding proteins, Anions, Transport and binding proteins, Other]. Length = 230 |
| >gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain | Back alignment and domain information |
|---|
Score = 52.2 bits (126), Expect = 1e-07
Identities = 24/84 (28%), Positives = 43/84 (51%), Gaps = 4/84 (4%)
Query: 68 MIRGISGGQKKRVTTGEMMVG-PALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAV 126
+ +SGGQ++RV ++ P L L +DE ++GLD ++ +++ LR+ G V
Sbjct: 77 YVPQLSGGQRQRVALARALLLNPDL-LLLDEPTSGLDPASRERLLELLRE--LAEEGRTV 133
Query: 127 ISLLQPAPETYDLFDDIILLSDGQ 150
I + D +I+L DG+
Sbjct: 134 IIVTHDPELAELAADRVIVLKDGK 157
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157 |
| >gnl|CDD|131259 TIGR02204, MsbA_rel, ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Score = 55.9 bits (135), Expect = 1e-07
Identities = 52/194 (26%), Positives = 91/194 (46%), Gaps = 26/194 (13%)
Query: 632 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARIS 691
L+G++ RPG AL+G SGAGK+TL +L + +G I + G +Q
Sbjct: 356 LDGLNLTVRPGETVALVGPSGAGKSTLFQLL--LRFYDPQSGRILLDGVDLRQ------- 406
Query: 692 GYCEQNDIHSPFVTI-YESLLFSAWLR----------LSPEVDSETRKMFIDEVMELVEL 740
+ ++ + + + +LF+A + EV++ R E + L
Sbjct: 407 --LDPAELRARMALVPQDPVLFAASVMENIRYGRPDATDEEVEAAARAAHAHEFIS--AL 462
Query: 741 NPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN 800
+ +G GV+ LS QR+R+ IA ++ + I+ +DE TS LDA + +V + +
Sbjct: 463 PEGYDTYLGERGVT-LSGGQRQRIAIARAILKDAPILLLDEATSALDAESEQLVQQAL-E 520
Query: 801 TVDTGRTVVCTIHQ 814
T+ GRT + H+
Sbjct: 521 TLMKGRTTLIIAHR 534
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. Length = 576 |
| >gnl|CDD|184586 PRK14240, PRK14240, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 53.5 bits (129), Expect = 1e-07
Identities = 47/188 (25%), Positives = 76/188 (40%), Gaps = 60/188 (31%)
Query: 632 LNGVSGAFRPGVLTALMGVSGAGKTTLM-------DVLAGRKTGGYITGNITISGYPKKQ 684
L ++ +TAL+G SG GK+T + D++ K I G + + G Q
Sbjct: 19 LKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVK----IEGEVLLDG----Q 70
Query: 685 ETFARISGYCEQNDIHS-------------PF-VTIYESLLFSAWLRLSPEVDSETRKMF 730
+ Y D++ PF ++IY+++ + P K
Sbjct: 71 DI------YKSDIDVNQLRKRVGMVFQQPNPFPMSIYDNVAY------GPRTHGIKDKKK 118
Query: 731 IDEVMELVELNPLRQSLV-----------GLPGVSGLSTEQRKRLTIAVELVANPSIIFM 779
+DE++E L+ + + L GLS Q++RL IA L P ++ M
Sbjct: 119 LDEIVE----KSLKGAALWDEVKDRLKKSAL----GLSGGQQQRLCIARALAVEPEVLLM 170
Query: 780 DEPTSGLD 787
DEPTS LD
Sbjct: 171 DEPTSALD 178
|
Length = 250 |
| >gnl|CDD|237456 PRK13641, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 54.1 bits (130), Expect = 2e-07
Identities = 66/254 (25%), Positives = 106/254 (41%), Gaps = 58/254 (22%)
Query: 603 SLTFDEV--VYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMD 660
S+ F+ V +YS P M+ +G L+ +S G AL+G +G+GK+TLM
Sbjct: 2 SIKFENVDYIYSPGTP--MEKKG--------LDNISFELEEGSFVALVGHTGSGKSTLMQ 51
Query: 661 VLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSP 720
+G ITI+GY ET G + SL+F P
Sbjct: 52 HFNALLKPS--SGTITIAGYHITPET-----GNKNLKKLRKKV-----SLVFQF-----P 94
Query: 721 EVDSETRKMFIDEVMELVELNPLR----------QSLVGLPGVSGLSTE----------- 759
E ++F + V++ VE P ++L L V GLS +
Sbjct: 95 EA-----QLFENTVLKDVEFGPKNFGFSEDEAKEKALKWLKKV-GLSEDLISKSPFELSG 148
Query: 760 -QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSID 818
Q +R+ IA + P I+ +DEP +GLD +M+ ++ G TV+ H D
Sbjct: 149 GQMRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMD-D 207
Query: 819 IFEAFDELFLMKRG 832
+ E D++ +++ G
Sbjct: 208 VAEYADDVLVLEHG 221
|
Length = 287 |
| >gnl|CDD|172750 PRK14262, PRK14262, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 53.4 bits (128), Expect = 2e-07
Identities = 50/164 (30%), Positives = 75/164 (45%), Gaps = 30/164 (18%)
Query: 644 LTALMGVSGAGKTTLM-------DVLAGRKTGGYITGNITISGY----PKKQETFARIS- 691
+TA++G SG GKTTL+ D + G + + G I G P+ T R
Sbjct: 31 ITAIIGPSGCGKTTLLRSINRMNDHIPGFR----VEGKIYFKGQDIYDPQLDVTEYRKKV 86
Query: 692 GYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVME--LVEL---NPLRQS 746
G Q P ++IY+++ F P + K +D ++E L + + ++
Sbjct: 87 GMVFQKPTPFP-MSIYDNVAFG------PRIHGVKSKHKLDRIVEESLKKAALWDEVKSE 139
Query: 747 LVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARA 790
L PG LS Q++RL IA L P +I +DEPTS LD A
Sbjct: 140 L-NKPGTR-LSGGQQQRLCIARALAVEPEVILLDEPTSALDPIA 181
|
Length = 250 |
| >gnl|CDD|236755 PRK10762, PRK10762, D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Score = 55.0 bits (133), Expect = 2e-07
Identities = 66/222 (29%), Positives = 100/222 (45%), Gaps = 38/222 (17%)
Query: 632 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGG---YITGNITISGYPKKQET 686
L+G + PG + AL+G +GAGK+T+M VL G + G Y+ +T +G QE
Sbjct: 20 LSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQE- 78
Query: 687 FARISGYCEQNDIHS-----PFVTIYESLLF-----SAWLRLSPEVDSETRKMFIDEVME 736
A I IH P +TI E++ + + R+ + +KM+ +
Sbjct: 79 -AGIG------IIHQELNLIPQLTIAENIFLGREFVNRFGRI------DWKKMYAEADKL 125
Query: 737 LVELNPLRQS--LVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV 794
L LN S LVG LS +++ + IA L +I MDEPT L +
Sbjct: 126 LARLNLRFSSDKLVG-----ELSIGEQQMVEIAKVLSFESKVIIMDEPTDALTDTETESL 180
Query: 795 MRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEI 836
R +R GR +V H+ +IFE D++ + R GQ I
Sbjct: 181 FRVIRELKSQGRGIVYISHRLK-EIFEICDDVTVF-RDGQFI 220
|
Length = 501 |
| >gnl|CDD|131817 TIGR02770, nickel_nikD, nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Score = 52.8 bits (127), Expect = 2e-07
Identities = 54/235 (22%), Positives = 95/235 (40%), Gaps = 23/235 (9%)
Query: 631 LLNGVSGAFRPGVLTALMGVSGAGKTT----LMDVLAGRKTGGYITGNITISGYPKKQET 686
L+ ++ + + G + AL+G SG+GK+ ++ +L T +G I + G P +
Sbjct: 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLT--QTSGEILLDGRPLLPLS 58
Query: 687 F-ARISGYCEQNDIHS--PFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPL 743
R QN + P T+ + + + I E +E V L
Sbjct: 59 IRGRHIATIMQNPRTAFNPLFTMGNHAIETLRSLGKLSKQARAL---ILEALEAVGLPDP 115
Query: 744 RQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV- 802
+ L P LS +R+ IA+ L+ P + DEPT+ LD A V++ +R
Sbjct: 116 EEVLKKYP--FQLSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQARVLKLLRELRQ 173
Query: 803 DTGRTVVCTIHQPSIDIFEAFDELFLMKRGG-------QEIYVGPLGRHSCHLIS 850
G ++ H + + DE+ +M G +EI+ P + L+S
Sbjct: 174 LFGTGILLITHDLGV-VARIADEVAVMDDGRIVERGTVKEIFYNPKHETTRKLLS 227
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous [Transport and binding proteins, Cations and iron carrying compounds]. Length = 230 |
| >gnl|CDD|184195 PRK13635, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 53.5 bits (129), Expect = 2e-07
Identities = 67/221 (30%), Positives = 97/221 (43%), Gaps = 47/221 (21%)
Query: 632 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYPKKQETFAR 689
L VS + G A++G +G+GK+TL +L G G IT+ G +ET
Sbjct: 23 LKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPE----AGTITVGGMVLSEETVWD 78
Query: 690 IS---GYCEQNDIHSP---FV--TIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELN 741
+ G QN P FV T+ + + F E + +E++E V+
Sbjct: 79 VRRQVGMVFQN----PDNQFVGATVQDDVAFGL----------ENIGVPREEMVERVD-Q 123
Query: 742 PLRQSLVGL-------PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV 794
LRQ VG+ P LS Q++R+ IA L P II +DE TS LD R V
Sbjct: 124 ALRQ--VGMEDFLNREP--HRLSGGQKQRVAIAGVLALQPDIIILDEATSMLDPRGRREV 179
Query: 795 MRTVRNTVDTGR-TVVCTIHQPSIDIFEAF--DELFLMKRG 832
+ TVR + TV+ H D+ EA D + +M +G
Sbjct: 180 LETVRQLKEQKGITVLSITH----DLDEAAQADRVIVMNKG 216
|
Length = 279 |
| >gnl|CDD|213264 cd03297, ABC_ModC_molybdenum_transporter, ATP-binding cassette domain of the molybdenum transport system | Back alignment and domain information |
|---|
Score = 51.9 bits (125), Expect = 3e-07
Identities = 28/86 (32%), Positives = 44/86 (51%), Gaps = 3/86 (3%)
Query: 71 GISGGQKKRVTTGEMMVG-PALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISL 129
+SGG+K+RV + P L L +DE + LD + Q++ L+Q I N VI +
Sbjct: 131 QLSGGEKQRVALARALAAQPEL-LLLDEPFSALDRALRLQLLPELKQ-IKKNLNIPVIFV 188
Query: 130 LQPAPETYDLFDDIILLSDGQIVYQG 155
E L D I+++ DG++ Y G
Sbjct: 189 THDLSEAEYLADRIVVMEDGRLQYIG 214
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 214 |
| >gnl|CDD|236689 PRK10419, nikE, nickel transporter ATP-binding protein NikE; Provisional | Back alignment and domain information |
|---|
Score = 53.2 bits (128), Expect = 3e-07
Identities = 48/166 (28%), Positives = 74/166 (44%), Gaps = 20/166 (12%)
Query: 632 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYP------KK 683
LN VS + + G AL+G SG GK+TL +L G + G N++ G P +
Sbjct: 28 LNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQG----NVSWRGEPLAKLNRAQ 83
Query: 684 QETFARISGYCEQNDIHS--PFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELN 741
++ F R Q+ I + P T+ E + LR +D R E++ V+L+
Sbjct: 84 RKAFRRDIQMVFQDSISAVNPRKTVREII--REPLRHLLSLDKAERLARASEMLRAVDLD 141
Query: 742 PLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 787
L P LS Q +R+ +A L P ++ +DE S LD
Sbjct: 142 D--SVLDKRPP--QLSGGQLQRVCLARALAVEPKLLILDEAVSNLD 183
|
Length = 268 |
| >gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Score = 54.2 bits (130), Expect = 4e-07
Identities = 51/183 (27%), Positives = 90/183 (49%), Gaps = 23/183 (12%)
Query: 639 FRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQET---FARIS-GYC 694
F +TA +G +GAGKTT + +L G +G + + G K ET R S G C
Sbjct: 953 FYENQITAFLGHNGAGKTTTLSILTGLLPP--TSGTVLVGG--KDIETNLDAVRQSLGMC 1008
Query: 695 EQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVS 754
Q++I +T+ E +LF A L+ E ++ ++ ++E L+ R
Sbjct: 1009 PQHNILFHHLTVAEHILFYAQLKGRSW---EEAQLEMEAMLEDTGLHHKRNE-----EAQ 1060
Query: 755 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA---RAAAIVMRTVRNTVDTGRTVVCT 811
LS +++L++A+ V + ++ +DEPTSG+D R+ ++ R +GRT++ +
Sbjct: 1061 DLSGGMQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKYR----SGRTIIMS 1116
Query: 812 IHQ 814
H
Sbjct: 1117 THH 1119
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272 |
| >gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Score = 53.9 bits (130), Expect = 4e-07
Identities = 54/183 (29%), Positives = 82/183 (44%), Gaps = 31/183 (16%)
Query: 622 QGVLE---DKLVLLNGVSGAFRPGVLTALMGVSGAGKTT----LMDVLAGRKTGGYITGN 674
+G+L+ D V++ +S RPG L+G SG+GK+T L+ ++ + G
Sbjct: 289 KGILKRTVDHNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLINSQ-------GE 341
Query: 675 ITISGYPKKQETFARISGYCEQNDIHSPFVTIYESL--------LFSAWLRL-SPEVDSE 725
I G P R ++ I F SL + LR+ P + +
Sbjct: 342 IWFDGQPLHN--LNRRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQPTLSAA 399
Query: 726 TRKMFIDEVMELVELNP-LRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTS 784
R+ + VME V L+P R P + S QR+R+ IA L+ PS+I +DEPTS
Sbjct: 400 QREQQVIAVMEEVGLDPETRHRY---P--AEFSGGQRQRIAIARALILKPSLIILDEPTS 454
Query: 785 GLD 787
LD
Sbjct: 455 SLD 457
|
Length = 529 |
| >gnl|CDD|184597 PRK14270, PRK14270, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 52.6 bits (126), Expect = 4e-07
Identities = 45/162 (27%), Positives = 75/162 (46%), Gaps = 32/162 (19%)
Query: 644 LTALMGVSGAGKTTLMDVLAGRK---TGGYITGNITISG---YPKKQETFA--RISGYCE 695
+TAL+G SG GK+T + L + I G + + G Y K + + G
Sbjct: 32 ITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDVVELRKRVGMVF 91
Query: 696 QNDIHSPF-VTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELV--------EL-NPLRQ 745
Q +PF ++IY+++ + P + K +D+++E E+ + L++
Sbjct: 92 QKP--NPFPMSIYDNVAYG------PRIHGIKDKKELDKIVEWALKKAALWDEVKDDLKK 143
Query: 746 SLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 787
S + L G Q++RL IA + P +I MDEPTS LD
Sbjct: 144 SALKLSG------GQQQRLCIARTIAVKPDVILMDEPTSALD 179
|
Length = 251 |
| >gnl|CDD|226643 COG4175, ProV, ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 53.5 bits (129), Expect = 4e-07
Identities = 58/230 (25%), Positives = 95/230 (41%), Gaps = 38/230 (16%)
Query: 632 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GNITISGYPKKQ--ET 686
+N S G + +MG+SG+GK+TL+ +L T G I I+ + E
Sbjct: 44 VNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRGEILVDGKDIAKLSAAELREL 103
Query: 687 FARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQS 746
+ Q+ P T+ E++ F ++ P+ + E R + E +ELV L
Sbjct: 104 RRKKISMVFQSFALLPHRTVLENVAFGLEVQGVPKAEREERAL---EALELVGLEGYADK 160
Query: 747 LVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT------VRN 800
LS ++R+ +A L +P I+ MDE S LD ++RT +
Sbjct: 161 YPN-----ELSGGMQQRVGLARALANDPDILLMDEAFSALDP-----LIRTEMQDELLEL 210
Query: 801 TVDTGRTVVCTIHQPSIDIFEAF---DELFLMKRG-------GQEIYVGP 840
+T+V H D+ EA D + +MK G +EI + P
Sbjct: 211 QAKLKKTIVFITH----DLDEALRIGDRIAIMKDGEIVQVGTPEEILLNP 256
|
Length = 386 |
| >gnl|CDD|213255 cd03288, ABCC_SUR2, ATP-binding cassette domain 2 of the sulfonylurea receptor SUR | Back alignment and domain information |
|---|
Score = 52.6 bits (126), Expect = 4e-07
Identities = 58/219 (26%), Positives = 98/219 (44%), Gaps = 41/219 (18%)
Query: 631 LLNGVSGAFRPGVLTALMGVSGAGKTTL-------MDVLAGRKTGGYITGNITISGYPKK 683
+L V +PG + G +G+GK++L +D+ G+ + I IS P
Sbjct: 36 VLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGK----IVIDGIDISKLPL- 90
Query: 684 QETFARISGYCEQNDIHSPFVTIYESLLFSAWLR--LSPEVDSETRKMFIDEVMELVELN 741
+R+S + + + +LFS +R L PE +++ E +E+ +L
Sbjct: 91 HTLRSRLS------------IILQDPILFSGSIRFNLDPECKCTDDRLW--EALEIAQLK 136
Query: 742 PLRQSLVGLPGVSGLSTE--------QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAI 793
+ +SL G G+ + TE QR+ +A V SI+ MDE T+ +D I
Sbjct: 137 NMVKSLPG--GLDAVVTEGGENFSVGQRQLFCLARAFVRKSSILIMDEATASIDMATENI 194
Query: 794 VMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 832
+ + V T RTVV H+ S I +A D + ++ RG
Sbjct: 195 LQKVVM-TAFADRTVVTIAHRVS-TILDA-DLVLVLSRG 230
|
The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 257 |
| >gnl|CDD|184200 PRK13640, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 52.5 bits (126), Expect = 4e-07
Identities = 39/135 (28%), Positives = 70/135 (51%), Gaps = 17/135 (12%)
Query: 72 ISGGQKKRVT-TGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLL 130
+SGGQK+RV G + V P + + +DE ++ LD + QI+ +R+ + + VIS+
Sbjct: 144 LSGGQKQRVAIAGILAVEPKI-IILDESTSMLDPAGKEQILKLIRK-LKKKNNLTVISIT 201
Query: 131 QPAPETYDLFDDIILLSDGQIVYQG-PRELV--LEFFASMGFRCP---------KRKGVA 178
E ++ D +++L DG+++ QG P E+ +E +G P K KG++
Sbjct: 202 HDIDEA-NMADQVLVLDDGKLLAQGSPVEIFSKVEMLKEIGLDIPFVYKLKNKLKEKGIS 260
Query: 179 DFLQEVTSRKDQRQY 193
QE+ + + QY
Sbjct: 261 -VPQEINTEEKLVQY 274
|
Length = 282 |
| >gnl|CDD|224045 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 52.2 bits (126), Expect = 5e-07
Identities = 40/135 (29%), Positives = 67/135 (49%), Gaps = 16/135 (11%)
Query: 32 YMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPAL 91
++ +E I + L++LGL+ AD V + +SGG+++RV ++ AL
Sbjct: 104 HLGLFGRPSKEDEEIVEEALELLGLEHLADRPVDE-----LSGGERQRV-----LIARAL 153
Query: 92 A-----LFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILL 146
A L +DE ++ LD + +++ LR ++ G V+ +L D +ILL
Sbjct: 154 AQETPILLLDEPTSHLDIAHQIEVLELLRD-LNREKGLTVVMVLHDLNLAARYADHLILL 212
Query: 147 SDGQIVYQGPRELVL 161
DG+IV QG E VL
Sbjct: 213 KDGKIVAQGTPEEVL 227
|
Length = 258 |
| >gnl|CDD|213269 cd03369, ABCC_NFT1, ATP-binding cassette domain 2 of NFT1, subfamily C | Back alignment and domain information |
|---|
Score = 51.3 bits (123), Expect = 5e-07
Identities = 55/234 (23%), Positives = 91/234 (38%), Gaps = 58/234 (24%)
Query: 609 VVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG 668
V Y+ D+P +L VS + G ++G +GAGK+TL +LA +
Sbjct: 14 VRYAPDLPP-------------VLKNVSFKVKAGEKIGIVGRTGAGKSTL--ILALFRFL 58
Query: 669 GYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESL--------LFSAWLRLSP 720
G I I G + P + SL LFS +R +
Sbjct: 59 EAEEGKIEIDG----------------IDISTIPLEDLRSSLTIIPQDPTLFSGTIRSNL 102
Query: 721 EVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMD 780
+ E I + + E G LS QR+ L +A L+ P ++ +D
Sbjct: 103 DPFDEYSDEEIYGALRVSE------------GGLNLSQGQRQLLCLARALLKRPRVLVLD 150
Query: 781 EPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIH--QPSIDIFEAFDELFLMKRG 832
E T+ +D A++ +T+R T T++ H + ID +D++ +M G
Sbjct: 151 EATASIDYATDALIQKTIREEF-TNSTILTIAHRLRTIID----YDKILVMDAG 199
|
Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (multidrug resistance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. Length = 207 |
| >gnl|CDD|213214 cd03247, ABCC_cytochrome_bd, ATP-binding cassette domain of CydCD, subfamily C | Back alignment and domain information |
|---|
Score = 50.8 bits (122), Expect = 6e-07
Identities = 49/210 (23%), Positives = 83/210 (39%), Gaps = 52/210 (24%)
Query: 626 EDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP--KK 683
E + +L +S + G AL+G SG+GK+TL+ +L G G IT+ G P
Sbjct: 12 EQEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQ--QGEITLDGVPVSDL 69
Query: 684 QETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPL 743
++ + + Q P+ LF LR
Sbjct: 70 EKALSSLISVLNQ----RPY-------LFDTTLR-------------------------- 92
Query: 744 RQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD 803
+ +G S +R+RL +A L+ + I+ +DEPT GLD ++ + V
Sbjct: 93 --NNLGRR----FSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFE-VL 145
Query: 804 TGRTVV-CTIHQPSIDIFEAFDELFLMKRG 832
+T++ T H I E D++ ++ G
Sbjct: 146 KDKTLIWITHHLTGI---EHMDKILFLENG 172
|
The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. Length = 178 |
| >gnl|CDD|226637 COG4167, SapF, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 52.1 bits (125), Expect = 6e-07
Identities = 45/157 (28%), Positives = 72/157 (45%), Gaps = 9/157 (5%)
Query: 635 VSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYPKKQETFARISG 692
VS R G A++G +G+GK+TL +LAG T G I N + RI
Sbjct: 32 VSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPLHFGDYSFRSKRIRM 91
Query: 693 -YCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLP 751
+ + N +P + I + LRL+ +++ E R+ I E + +V L P +
Sbjct: 92 IFQDPNTSLNPRLRI--GQILDFPLRLNTDLEPEQRRKQIFETLRMVGLLPDHANYY--- 146
Query: 752 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 788
L+ Q++R+ +A L+ P II DE + LD
Sbjct: 147 -PHMLAPGQKQRVALARALILRPKIIIADEALASLDM 182
|
Length = 267 |
| >gnl|CDD|182778 PRK10851, PRK10851, sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 52.8 bits (127), Expect = 6e-07
Identities = 47/162 (29%), Positives = 82/162 (50%), Gaps = 11/162 (6%)
Query: 631 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNIT-ISGYPKKQETF 687
+LN +S G + AL+G SG+GKTTL+ ++AG +T G+I + T +S +
Sbjct: 17 VLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHARD--- 73
Query: 688 ARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSL 747
R G+ Q+ +T+++++ F L + P + +V +L+E+ L
Sbjct: 74 -RKVGFVFQHYALFRHMTVFDNIAFG--LTVLPRRERPNAAAIKAKVTQLLEMVQLAHLA 130
Query: 748 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 789
P + LS Q++R+ +A L P I+ +DEP LDA+
Sbjct: 131 DRYP--AQLSGGQKQRVALARALAVEPQILLLDEPFGALDAQ 170
|
Length = 353 |
| >gnl|CDD|213183 cd03216, ABC_Carb_Monos_I, First domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 50.1 bits (121), Expect = 6e-07
Identities = 20/77 (25%), Positives = 38/77 (49%), Gaps = 1/77 (1%)
Query: 756 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQP 815
LS +R+ + IA L N ++ +DEPT+ L + + +R G V+ H+
Sbjct: 83 LSVGERQMVEIARALARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRL 142
Query: 816 SIDIFEAFDELFLMKRG 832
++FE D + +++ G
Sbjct: 143 D-EVFEIADRVTVLRDG 158
|
This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 163 |
| >gnl|CDD|213192 cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 50.9 bits (123), Expect = 7e-07
Identities = 30/116 (25%), Positives = 54/116 (46%), Gaps = 21/116 (18%)
Query: 42 EANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMV-GPALALFMDEIST 100
E + L+++GL+ D +SGGQK+RV ++ P + L +DE +
Sbjct: 110 EIEERVEEALELVGLEGLRD-----RSPFTLSGGQKQRVAIAGVLAMDPDI-LLLDEPTA 163
Query: 101 GLDSSTTFQIVNCLRQNIHINSGTAVI------SLLQPAPETYDLFDDIILLSDGQ 150
GLD + +++ L++ + G +I LL +L D +I+L DG+
Sbjct: 164 GLDPAGRRELLELLKK-LK-AEGKTIIIVTHDLDLL------LELADRVIVLEDGK 211
|
Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 211 |
| >gnl|CDD|226360 COG3840, ThiQ, ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 51.6 bits (124), Expect = 7e-07
Identities = 50/191 (26%), Positives = 92/191 (48%), Gaps = 32/191 (16%)
Query: 638 AFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFAR--ISGYCE 695
G + A++G SGAGK+TL++++AG +T +G I I+G A +S +
Sbjct: 21 TVPAGEIVAILGPSGAGKSTLLNLIAGFETPA--SGEILINGVDHTASPPAERPVSMLFQ 78
Query: 696 QNDIHSPFVTIYESLLF--SAWLRLSPE----VDSETRKMFIDEVMELVELNPLRQSLVG 749
+N++ + +T+ +++ S L+L+ E V++ ++ + ++
Sbjct: 79 ENNLFA-HLTVAQNIGLGLSPGLKLNAEQREKVEAAAAQVGLAGFLKR------------ 125
Query: 750 LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA--RAAAIVMRTVRNTV--DTG 805
LPG LS QR+R+ +A LV I+ +DEP S LD RA M + + + +
Sbjct: 126 LPGE--LSGGQRQRVALARCLVREQPILLLDEPFSALDPALRAE---MLALVSQLCDERK 180
Query: 806 RTVVCTIHQPS 816
T++ H P
Sbjct: 181 MTLLMVTHHPE 191
|
Length = 231 |
| >gnl|CDD|130344 TIGR01277, thiQ, thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 51.0 bits (122), Expect = 7e-07
Identities = 49/185 (26%), Positives = 83/185 (44%), Gaps = 28/185 (15%)
Query: 642 GVLTALMGVSGAGKTTLMDVLAGRKT--GGYITGN-ITISGYPKKQETFARISGYCEQND 698
G + A+MG SGAGK+TL++++AG G I N + +G Q + + + E N
Sbjct: 24 GEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLAPYQRPVSML--FQENNL 81
Query: 699 IHSPFVTIYES--LLFSAWLRLSPE----VDSETRKMFIDEVMELVELNPLRQSLVGLPG 752
+T+ ++ L L+L+ E V +++ I + ++ LP
Sbjct: 82 F--AHLTVRQNIGLGLHPGLKLNAEQQEKVVDAAQQVGIADYLDR------------LPE 127
Query: 753 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCT 811
LS QR+R+ +A LV I+ +DEP S LD ++ V+ RT++
Sbjct: 128 --QLSGGQRQRVALARCLVRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMV 185
Query: 812 IHQPS 816
H S
Sbjct: 186 THHLS 190
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found [Transport and binding proteins, Other]. Length = 213 |
| >gnl|CDD|172759 PRK14271, PRK14271, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 51.6 bits (123), Expect = 8e-07
Identities = 54/191 (28%), Positives = 90/191 (47%), Gaps = 17/191 (8%)
Query: 631 LLNGVSGAFRPGVLTALMGVSGAGKTTLM-------DVLAG-RKTGGYITGNITISGYPK 682
+L+ VS F +T+LMG +G+GKTT + D ++G R +G + G +I Y
Sbjct: 36 VLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRD 95
Query: 683 KQETFARISGYCEQNDIHSPF-VTIYESLLFSAWL-RLSPEVDSETRKMFIDEVMELVEL 740
E F R G Q +PF ++I +++L +L P E R + + E+
Sbjct: 96 VLE-FRRRVGMLFQRP--NPFPMSIMDNVLAGVRAHKLVPR--KEFRGVAQARLTEVGLW 150
Query: 741 NPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN 800
+ ++ L P LS Q++ L +A L NP ++ +DEPTS LD + +R+
Sbjct: 151 DAVKDRLSDSP--FRLSGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRS 208
Query: 801 TVDTGRTVVCT 811
D ++ T
Sbjct: 209 LADRLTVIIVT 219
|
Length = 276 |
| >gnl|CDD|172761 PRK14273, PRK14273, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 51.6 bits (123), Expect = 8e-07
Identities = 54/198 (27%), Positives = 89/198 (44%), Gaps = 32/198 (16%)
Query: 632 LNGVSGAFRPGVLTALMGVSGAGKTTLM-------DVLAGRKTGGYITGNITISGYPKKQ 684
LN ++ +TAL+G SG GK+T + D++ G K I GN+ G
Sbjct: 23 LNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIK----IEGNVIYEGKNIYS 78
Query: 685 ETF-----ARISGYCEQNDIHSPFV-TIYESLLFSAWLRLSPEVDSETRKMFIDEVME-- 736
F R G Q +PF+ +IY+++ + P++ K +DE++E
Sbjct: 79 NNFDILELRRKIGMVFQTP--NPFLMSIYDNISYG------PKIHGTKDKKKLDEIVEQS 130
Query: 737 LVE---LNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAI 793
L + N ++ L LS Q++RL IA L P++I MDEPTS LD +
Sbjct: 131 LKKSALWNEVKDKLN--TNALSLSGGQQQRLCIARTLAIEPNVILMDEPTSALDPISTGK 188
Query: 794 VMRTVRNTVDTGRTVVCT 811
+ + N ++ ++ T
Sbjct: 189 IEELIINLKESYTIIIVT 206
|
Length = 254 |
| >gnl|CDD|213220 cd03253, ABCC_ATM1_transporter, ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C | Back alignment and domain information |
|---|
Score = 51.1 bits (123), Expect = 1e-06
Identities = 36/112 (32%), Positives = 56/112 (50%), Gaps = 12/112 (10%)
Query: 61 DTMVGDEMIRG--ISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNI 118
DT+VG+ RG +SGG+K+RV ++ L +DE ++ LD+ T +I LR
Sbjct: 128 DTIVGE---RGLKLSGGEKQRVAIARAILKNPPILLLDEATSALDTHTEREIQAALRDVS 184
Query: 119 HINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQG-PRELVLE--FFASM 167
G I + + D II+L DG+IV +G EL+ + +A M
Sbjct: 185 ---KGRTTIVIAHRLSTIVNA-DKIIVLKDGRIVERGTHEELLAKGGLYAEM 232
|
ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 236 |
| >gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 52.6 bits (127), Expect = 1e-06
Identities = 47/183 (25%), Positives = 74/183 (40%), Gaps = 29/183 (15%)
Query: 632 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARIS 691
L+ VS R G + +L G +GAGK+TLM VL+G G G I G + + I
Sbjct: 21 LDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQ---ASNIR 77
Query: 692 GYCEQNDIHSPFVTIYESLLFSAWLRLSPEVD--------SE-TRKMFIDEVMELVELNP 742
E+ I I++ L L E+ +E T +D +
Sbjct: 78 D-TERAGI----AIIHQELA------LVKELSVLENIFLGNEITPGGIMDYDAMYLRAQK 126
Query: 743 LRQSL-----VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT 797
L L P V L Q++ + IA L ++ +DEPT+ L A+++
Sbjct: 127 LLAQLKLDINPATP-VGNLGLGQQQLVEIAKALNKQARLLILDEPTASLTESETAVLLDI 185
Query: 798 VRN 800
+R+
Sbjct: 186 IRD 188
|
Length = 506 |
| >gnl|CDD|236865 PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 52.5 bits (127), Expect = 1e-06
Identities = 61/214 (28%), Positives = 98/214 (45%), Gaps = 33/214 (15%)
Query: 632 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGY--ITGNITISGYPKKQETFAR 689
L G+S + G AL+G +G GK+TL+ +L T + G I ++G P
Sbjct: 356 LKGLSLQIKAGEKVALLGRTGCGKSTLLQLL----TRAWDPQQGEILLNGQP-------- 403
Query: 690 ISGYCEQNDIHSPFVTIYESL-LFSAWLR-----LSPEVDSETRKMFIDEVMELVELNPL 743
I+ Y E + + + + LFSA LR +P E + EV++ V L L
Sbjct: 404 IADYSEA-ALRQAISVVSQRVHLFSATLRDNLLLAAPNASDEA----LIEVLQQVGLEKL 458
Query: 744 RQSLVGLP---GVSG--LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV 798
+ GL G G LS +++RL IA L+ + ++ +DEPT GLDA ++ +
Sbjct: 459 LEDDKGLNAWLGEGGRQLSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELL 518
Query: 799 RNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 832
+TV+ H+ + E FD + +M G
Sbjct: 519 A-EHAQNKTVLMITHR--LTGLEQFDRICVMDNG 549
|
Length = 574 |
| >gnl|CDD|184214 PRK13657, PRK13657, cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 52.3 bits (126), Expect = 1e-06
Identities = 64/236 (27%), Positives = 101/236 (42%), Gaps = 34/236 (14%)
Query: 605 TFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG 664
FD+V +S D QGV VS +PG A++G +GAGK+TL+++L
Sbjct: 336 EFDDVSFSYDN----SRQGV--------EDVSFEAKPGQTVAIVGPTGAGKSTLINLL-- 381
Query: 665 RKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESLLF----SAWLRLSP 720
++ +G I I G I + + V ++ LF +R+
Sbjct: 382 QRVFDPQSGRILIDG--------TDIRTVTRASLRRNIAVVFQDAGLFNRSIEDNIRVGR 433
Query: 721 E--VDSETRKMF-IDEVMELVELNPLR-QSLVGLPGVSGLSTEQRKRLTIAVELVANPSI 776
D E R + + +E P ++VG G LS +R+RL IA L+ +P I
Sbjct: 434 PDATDEEMRAAAERAQAHDFIERKPDGYDTVVGERG-RQLSGGERQRLAIARALLKDPPI 492
Query: 777 IFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 832
+ +DE TS LD A V + + + GRT H+ S + A D + + G
Sbjct: 493 LILDEATSALDVETEAKVKAAL-DELMKGRTTFIIAHRLST-VRNA-DRILVFDNG 545
|
Length = 588 |
| >gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Score = 52.3 bits (126), Expect = 1e-06
Identities = 60/224 (26%), Positives = 100/224 (44%), Gaps = 45/224 (20%)
Query: 613 VDMPEEMKVQGVLEDKLVLLNGVSG-------AFRPGVLTALMGVSGAGKTTLMDVLAGR 665
V++PEE LE+++V GV+G RPG + ++G +G GK+T + +LAG
Sbjct: 70 VNLPEE------LEEEVVHRYGVNGFKLYRLPTPRPGKVVGILGPNGIGKSTALKILAGE 123
Query: 666 KTGGYITGNI-TISGYPKKQETFARISGYCEQNDIHSPFVTIYESLLFSA----WLRLSP 720
+ N+ P E R G ++ + F +YE L + ++ L P
Sbjct: 124 -----LKPNLGRYEDPPSWDEVIKRFRG----TELQNYFKKLYEGELRAVHKPQYVDLIP 174
Query: 721 E-VDSETRKM--------FIDEVMELVELNPL--RQSLVGLPGVSGLSTEQRKRLTIAVE 769
+ V + ++ DEV+E + L + R VS LS + +R+ IA
Sbjct: 175 KVVKGKVGELLKKVDERGKFDEVVERLGLENVLDRD-------VSELSGGELQRVAIAAA 227
Query: 770 LVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIH 813
L+ + + F DEP+S LD R R +R + G+ V+ H
Sbjct: 228 LLRDADVYFFDEPSSYLDIRQRLNAARVIRELAEDGKYVIVVEH 271
|
Length = 591 |
| >gnl|CDD|181965 PRK09580, sufC, cysteine desulfurase ATPase component; Reviewed | Back alignment and domain information |
|---|
Score = 50.6 bits (121), Expect = 1e-06
Identities = 54/215 (25%), Positives = 84/215 (39%), Gaps = 40/215 (18%)
Query: 625 LEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISG----- 679
+EDK +L G++ RPG + A+MG +G+GK+TL LAGR+ G + G
Sbjct: 11 VEDKAIL-RGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLE 69
Query: 680 ----------------YPKKQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVD 723
YP I G Q + + + R +D
Sbjct: 70 LSPEDRAGEGIFMAFQYP------VEIPGVSNQFFLQTALNAVRS-------YRGQEPLD 116
Query: 724 SETRKMFIDEVMELVELNP-LRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEP 782
+ ++E + L+++ L V + G S ++KR I V P + +DE
Sbjct: 117 RFDFQDLMEEKIALLKMPEDLLTRSVNV----GFSGGEKKRNDILQMAVLEPELCILDES 172
Query: 783 TSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSI 817
SGLD A IV V + D R+ + H I
Sbjct: 173 DSGLDIDALKIVADGVNSLRDGKRSFIIVTHYQRI 207
|
Length = 248 |
| >gnl|CDD|223521 COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 51.0 bits (123), Expect = 2e-06
Identities = 32/101 (31%), Positives = 52/101 (51%), Gaps = 23/101 (22%)
Query: 73 SGGQKKRVTTGEMMVGPALA-----LFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVI 127
SGG ++RV M+ ALA L DE +T LD + QI++ L++ + GTA+I
Sbjct: 155 SGGMRQRV-----MIAMALALNPKLLIADEPTTALDVTVQAQILDLLKE-LQREKGTALI 208
Query: 128 SLLQPAPETYDL------FDDIILLSDGQIVYQGPRELVLE 162
+ T+DL D + ++ G+IV +GP E + +
Sbjct: 209 LI------THDLGVVAEIADRVAVMYAGRIVEEGPVEEIFK 243
|
Length = 316 |
| >gnl|CDD|234189 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Score = 51.8 bits (125), Expect = 2e-06
Identities = 32/109 (29%), Positives = 59/109 (54%), Gaps = 19/109 (17%)
Query: 61 DTMVGDEMIRGISGGQKKRVTTGEMMVG-PALALFMDEISTGLDSSTTFQIVNCLRQNIH 119
D +G E R +SGGQ++ V ++ P + L +DE ++ +D+ + + + L++ +
Sbjct: 592 DMQIG-ERGRSLSGGQRQAVALARALLRDPPI-LLLDEPTSAMDNRSEERFKDRLKRWL- 648
Query: 120 INSGTAVI------SLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLE 162
+G ++ SLL DL D II++ +G+IV GP++ VLE
Sbjct: 649 --AGKTLVLVTHRTSLL-------DLVDRIIVMDNGRIVADGPKDQVLE 688
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]. Length = 694 |
| >gnl|CDD|213183 cd03216, ABC_Carb_Monos_I, First domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 48.6 bits (117), Expect = 2e-06
Identities = 20/43 (46%), Positives = 29/43 (67%), Gaps = 2/43 (4%)
Query: 632 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT 672
L+GVS + R G + AL+G +GAGK+TLM +L+G + G I
Sbjct: 16 LDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEIL 58
|
This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 163 |
| >gnl|CDD|183280 PRK11701, phnK, phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Score = 50.7 bits (122), Expect = 2e-06
Identities = 36/102 (35%), Positives = 53/102 (51%), Gaps = 12/102 (11%)
Query: 735 MELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV 794
+E VE++ R + LP + S ++RL IA LV +P ++FMDEPT GLD A +
Sbjct: 135 LERVEIDAAR--IDDLP--TTFSGGMQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARL 190
Query: 795 MRTVRNTV-DTGRTVVCTIHQPSIDIFEA---FDELFLMKRG 832
+ +R V + G VV H D+ A L +MK+G
Sbjct: 191 LDLLRGLVRELGLAVVIVTH----DLAVARLLAHRLLVMKQG 228
|
Length = 258 |
| >gnl|CDD|226635 COG4161, ArtP, ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 50.6 bits (121), Expect = 2e-06
Identities = 48/175 (27%), Positives = 76/175 (43%), Gaps = 14/175 (8%)
Query: 647 LMGVSGAGKTTLMDVL----AGRKTGGYITGN-ITISGYPKKQETFA--RISGYCEQNDI 699
L+G SGAGK++L+ VL R I GN S P + R G Q
Sbjct: 33 LLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRDLRRNVGMVFQQYN 92
Query: 700 HSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTE 759
P +T+ E+L+ A R+ + +L++ L+ P LS
Sbjct: 93 LWPHLTVQENLI-EAPCRVLGLSKDQALA----RAEKLLKRLRLKPYADRYP--LHLSGG 145
Query: 760 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQ 814
Q++R+ IA L+ P ++ DEPT+ LD A ++ ++ +TG T V H+
Sbjct: 146 QQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIKELAETGITQVIVTHE 200
|
Length = 242 |
| >gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Score = 52.0 bits (125), Expect = 2e-06
Identities = 57/208 (27%), Positives = 96/208 (46%), Gaps = 19/208 (9%)
Query: 632 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARIS 691
L+ +S PG AL+G SG+GK+TL++++ + +G I + G+ T A +
Sbjct: 348 LDSISLVIEPGETVALVGRSGSGKSTLVNLIP--RFYEPDSGQILLDGHDLADYTLASLR 405
Query: 692 GYCEQNDIHSPFVTIYESLLFS--AWLRLSPEVDSETRKMFIDE-VMELVELNPLR-QSL 747
Q + S V ++ + + A+ R +E + + V+ PL +
Sbjct: 406 ---RQVALVSQDVVLFNDTIANNIAYGRTEQADRAEIERALAAAYAQDFVDKLPLGLDTP 462
Query: 748 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD---T 804
+G GV LS QR+RL IA L+ + I+ +DE TS LD + R V+ ++
Sbjct: 463 IGENGVL-LSGGQRQRLAIARALLKDAPILILDEATSALDNESE----RLVQAALERLMQ 517
Query: 805 GRTVVCTIHQPSIDIFEAFDELFLMKRG 832
GRT + H+ S E D + +M G
Sbjct: 518 GRTTLVIAHRLS--TIEKADRIVVMDDG 543
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]. Length = 571 |
| >gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 51.7 bits (124), Expect = 2e-06
Identities = 54/225 (24%), Positives = 96/225 (42%), Gaps = 27/225 (12%)
Query: 598 PFEPHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTT 657
P EPH +V+ + V+ ++ VS + R G + + G+ GAG+T
Sbjct: 247 PHEPH--EIGDVILEA---RNLTCWDVINPHRKRVDDVSFSLRRGEILGVAGLVGAGRTE 301
Query: 658 LMDVLAGRKTGGYITGNITISGYP-----KKQETFARISGYCEQNDIHS--PFVTIYESL 710
L+ L G G + GN+ I+G P Q A I+ E H P + + +++
Sbjct: 302 LVQALFGAYPGKF-EGNVFINGKPVDIRNPAQAIRAGIAMVPEDRKRHGIVPILGVGKNI 360
Query: 711 LFSAWLRLSPEVDSETRKMFIDEVMEL------VELNPLRQSLVGLPGVSGLSTEQRKRL 764
S + S KM ID EL ++ ++ + LP + LS +++
Sbjct: 361 TLSV-------LKSFCFKMRIDAAAELQIIGSAIQRLKVKTASPFLP-IGRLSGGNQQKA 412
Query: 765 TIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVV 809
+A L+ NP ++ +DEPT G+D A + + + G ++
Sbjct: 413 VLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQEGVAII 457
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 500 |
| >gnl|CDD|184125 PRK13538, PRK13538, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 49.8 bits (120), Expect = 2e-06
Identities = 53/198 (26%), Positives = 85/198 (42%), Gaps = 35/198 (17%)
Query: 630 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYP-KKQ-E 685
+L +G+S G L + G +GAGKT+L+ +LAG R G + G P ++Q +
Sbjct: 15 ILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQ----GEPIRRQRD 70
Query: 686 TFARISGYC-EQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLR 744
+ + Y Q I +T E+L F RL D E L
Sbjct: 71 EYHQDLLYLGHQPGI-KTELTALENLRFYQ--RLHGPGDDEA----------------LW 111
Query: 745 QSL--VGLPG-----VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT 797
++L VGL G V LS Q++R+ +A + + +DEP + +D + A +
Sbjct: 112 EALAQVGLAGFEDVPVRQLSAGQQRRVALARLWLTRAPLWILDEPFTAIDKQGVARLEAL 171
Query: 798 VRNTVDTGRTVVCTIHQP 815
+ + G V+ T HQ
Sbjct: 172 LAQHAEQGGMVILTTHQD 189
|
Length = 204 |
| >gnl|CDD|106587 PRK13644, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 50.8 bits (121), Expect = 2e-06
Identities = 53/206 (25%), Positives = 88/206 (42%), Gaps = 17/206 (8%)
Query: 632 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYPKKQETFAR 689
L ++ + G ++G +G+GK+TL L G R G + + +G K + +
Sbjct: 18 LENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRK 77
Query: 690 ISGYCEQNDIHSPFV--TIYESLLFSAW-LRLSPEVDSETRKMFIDEVMELVELNPLRQS 746
+ G QN + FV T+ E L F L L P E RK +D + + L R
Sbjct: 78 LVGIVFQNP-ETQFVGRTVEEDLAFGPENLCLPP---IEIRKR-VDRALAEIGLEKYRHR 132
Query: 747 LVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGR 806
LS Q + + +A L P + DE TS LD + V+ ++ + G+
Sbjct: 133 -----SPKTLSGGQGQCVALAGILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGK 187
Query: 807 TVVCTIHQPSIDIFEAFDELFLMKRG 832
T+V H +++ D + +M RG
Sbjct: 188 TIVYITH--NLEELHDADRIIVMDRG 211
|
Length = 274 |
| >gnl|CDD|223912 COG0842, COG0842, ABC-type multidrug transport system, permease component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 50.7 bits (121), Expect = 2e-06
Identities = 31/283 (10%), Positives = 86/283 (30%), Gaps = 30/283 (10%)
Query: 926 SSWIQFVACLWKQHWSYWR---NPPYTAVRFFFTAFIALLFGSLFWDLGGRTKRNQDLFN 982
++ ++ ++ + + LLFG G + +
Sbjct: 26 FLLLRILSRFLRRLLEFQVLVDASALIIAPILYLIIFGLLFGLREGLSGRLYHWSNPSLD 85
Query: 983 AMGSMFTAVLFLGVQYCSSVQPIVSVERTVFYREKAAGMYAGIPWALAQVMIEIPYILVQ 1042
+ + V+ + V + ++ R + + + + + +PY++V
Sbjct: 86 YLAFIVPGVILMSVLFSGIFSFSSALFREREFGTLERLLVSPVSRLFILLGKIVPYLVVA 145
Query: 1043 SVVYGAIVYAMI---GFEWTAAKFFWYIFFMYFTLLFFTFYGMMAVALTPNHHIAAIVST 1099
S++ G ++ + G + + + + L +++ A+ V
Sbjct: 146 SLIAGLVLLVIAFLLGVPFLGSLLLLLLLLLLLLLATVALGLLLSTFAKSQLQCASAVGN 205
Query: 1100 LFYGLWNVFSGFIIPRPRIPIWWRWYYWANPIAWTLYGLVASQFGDMDDKKMDTGETVKQ 1159
L SG P +P W + + NP+ + +
Sbjct: 206 LLILPLGFLSGVFFPLELLPAWLQGISYINPLTYAI-----------------------D 242
Query: 1160 FLKDYFDFKHDFLGVVAAVLVVFAVLFGFLFALGIKMFNFQRR 1202
L+ + G+ ++L + + LG+ + +R+
Sbjct: 243 ALRYVYLGGWRNDGIWISLL-ILLLFAVVFLLLGLLLLRRRRK 284
|
Length = 286 |
| >gnl|CDD|172739 PRK14251, PRK14251, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 50.4 bits (120), Expect = 2e-06
Identities = 51/183 (27%), Positives = 83/183 (45%), Gaps = 28/183 (15%)
Query: 632 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG----YITGNITISG---YPKKQ 684
L+G+S F LTAL+G SG GK+T + L R ITG I G Y K
Sbjct: 20 LHGISLDFEEKELTALIGPSGCGKSTFLRCL-NRMNDDIENIKITGEIKFEGQNIYGSKM 78
Query: 685 ETFA--RISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP 742
+ + G Q PF ++Y+++ + L+++ D E ID+ +E
Sbjct: 79 DLVELRKEVGMVFQQPTPFPF-SVYDNVAYG--LKIAGVKDKE----LIDQRVE----ES 127
Query: 743 LRQSLVGLP-------GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM 795
L+Q+ + S Q++R+ IA L P ++ +DEPTS LD +++ +
Sbjct: 128 LKQAAIWKETKDNLDRNAQAFSGGQQQRICIARALAVRPKVVLLDEPTSALDPISSSEIE 187
Query: 796 RTV 798
T+
Sbjct: 188 ETL 190
|
Length = 251 |
| >gnl|CDD|213203 cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-binding cassette domain 1 of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 50.4 bits (121), Expect = 2e-06
Identities = 40/191 (20%), Positives = 80/191 (41%), Gaps = 26/191 (13%)
Query: 640 RPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDI 699
R G + L+G +G GK+T + +LAG+ + N+ G + I +++
Sbjct: 24 REGQVLGLVGPNGIGKSTALKILAGK-----LKPNL---GKFDDPPDWDEILDEFRGSEL 75
Query: 700 HSPFVTIYESLLFSA----WLRLSPE-VDSETRKM--------FIDEVMELVELNPLRQS 746
+ F + E + ++ L P+ V + ++ +DE+++ +EL +
Sbjct: 76 QNYFTKLLEGDVKVIVKPQYVDLIPKAVKGKVGELLKKKDERGKLDELVDQLELRHVLDR 135
Query: 747 LVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGR 806
+ LS + +R+ IA L + F DEP+S LD + R +R +
Sbjct: 136 -----NIDQLSGGELQRVAIAAALARDADFYFFDEPSSYLDIKQRLNAARLIRELAEDDN 190
Query: 807 TVVCTIHQPSI 817
V+ H ++
Sbjct: 191 YVLVVEHDLAV 201
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 255 |
| >gnl|CDD|236523 PRK09452, potA, putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Score = 51.1 bits (123), Expect = 2e-06
Identities = 41/154 (26%), Positives = 74/154 (48%), Gaps = 26/154 (16%)
Query: 644 LTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHS-- 701
LT L+G SG GKTT++ ++AG +T +G I + G + + E +++
Sbjct: 43 LT-LLGPSGCGKTTVLRLIAGFETPD--SGRIMLDG-----QDITHVPA--ENRHVNTVF 92
Query: 702 ------PFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSG 755
P +T++E++ F ++ +P + R M E + +V+L Q
Sbjct: 93 QSYALFPHMTVFENVAFGLRMQKTPAAEITPRVM---EALRMVQLEEFAQR-----KPHQ 144
Query: 756 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 789
LS Q++R+ IA +V P ++ +DE S LD +
Sbjct: 145 LSGGQQQRVAIARAVVNKPKVLLLDESLSALDYK 178
|
Length = 375 |
| >gnl|CDD|184596 PRK14267, PRK14267, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 50.2 bits (120), Expect = 2e-06
Identities = 62/218 (28%), Positives = 95/218 (43%), Gaps = 37/218 (16%)
Query: 643 VLTALMGVSGAGKTTLM---DVLAGRKTGGYITGNITISG---YPKKQETFA--RISGYC 694
+ ALMG SG GK+TL+ + L + G + + G Y + R G
Sbjct: 31 GVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDPIEVRREVGMV 90
Query: 695 EQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVEL--------NPLRQS 746
Q P +TIY+++ ++L+ V S+ E+ E VE + ++
Sbjct: 91 FQYPNPFPHLTIYDNVAIG--VKLNGLVKSK------KELDERVEWALKKAALWDEVKDR 142
Query: 747 LVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGR 806
L P S LS QR+RL IA L P I+ MDEPT+ +D A + + +
Sbjct: 143 LNDYP--SNLSGGQRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFE-LKKEY 199
Query: 807 TVVCTIHQPS----IDIFEAFDELFLMKRGGQEIYVGP 840
T+V H P+ + + AF L+L G+ I VGP
Sbjct: 200 TIVLVTHSPAQAARVSDYVAF--LYL----GKLIEVGP 231
|
Length = 253 |
| >gnl|CDD|184582 PRK14236, PRK14236, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 50.4 bits (121), Expect = 2e-06
Identities = 52/186 (27%), Positives = 80/186 (43%), Gaps = 42/186 (22%)
Query: 632 LNGVSGAFRPGVLTALMGVSGAGKTTLM-------DVLAGRKTGGYITGNITISG---YP 681
L +S +TA +G SG GK+TL+ D++ + I G I + G Y
Sbjct: 41 LFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCR----IEGEIRLDGQNIYD 96
Query: 682 KKQE--TFARISGYCEQNDIHSPF-VTIYESLLFSAWLR---------LSPEVDSETRKM 729
KK + R G Q +PF +IYE++++ LR L V+ R
Sbjct: 97 KKVDVAELRRRVGMVFQRP--NPFPKSIYENVVYG--LRLQGINNRRVLDEAVERSLRGA 152
Query: 730 FI-DEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 788
+ DEV + + N GLS Q++RL IA + P ++ +DEPTS LD
Sbjct: 153 ALWDEVKDRLHENAF-----------GLSGGQQQRLVIARAIAIEPEVLLLDEPTSALDP 201
Query: 789 RAAAIV 794
+ +
Sbjct: 202 ISTLKI 207
|
Length = 272 |
| >gnl|CDD|184584 PRK14238, PRK14238, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 50.2 bits (120), Expect = 2e-06
Identities = 47/166 (28%), Positives = 75/166 (45%), Gaps = 40/166 (24%)
Query: 644 LTALMGVSGAGKTT-------LMDVLAGRKTGG---YITGNITISGYPKKQETFARISGY 693
+TA++G SG GK+T +++++ KT G Y NI Y +E +
Sbjct: 52 VTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYSV-EELRTNVGMV 110
Query: 694 CEQNDIHSPF-VTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLP- 751
++ + PF +IY+++ + P++ K +DE++E +SL G
Sbjct: 111 FQKPN---PFPKSIYDNVTYG------PKIHGIKDKKTLDEIVE--------KSLRGAAI 153
Query: 752 ----------GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 787
GLS Q++RL IA L P +I MDEPTS LD
Sbjct: 154 WDELKDRLHDNAYGLSGGQQQRLCIARCLAIEPDVILMDEPTSALD 199
|
Length = 271 |
| >gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 51.5 bits (124), Expect = 2e-06
Identities = 50/172 (29%), Positives = 73/172 (42%), Gaps = 22/172 (12%)
Query: 627 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYPKKQ 684
D L ++G+S R G L+G SG+GK+TL L G I G +K+
Sbjct: 298 DHLRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPSQGEIRFDGQDIDGLSRKE 357
Query: 685 ETFARISGYCEQNDIHSPFVTIYESL--------LFSAWLRL-SPEVDSETRKMFIDEVM 735
R + F Y SL + LR+ P++ + R + E +
Sbjct: 358 MRPLR-------RRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEPKLSAAERDQRVIEAL 410
Query: 736 ELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 787
E V L+P + P S QR+R+ IA L+ P +I +DEPTS LD
Sbjct: 411 EEVGLDP--ATRNRYP--HEFSGGQRQRIAIARALILKPELILLDEPTSALD 458
|
Length = 534 |
| >gnl|CDD|183080 PRK11300, livG, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 50.0 bits (120), Expect = 2e-06
Identities = 53/185 (28%), Positives = 83/185 (44%), Gaps = 43/185 (23%)
Query: 629 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GNITISGYPKKQ- 684
L+ +N V+ R + +L+G +GAGKTT+ + L G + TGG I I G P Q
Sbjct: 18 LLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQI 77
Query: 685 ------ETFARISGYCEQNDIHSPFVTIYESLL----------FSAWLRLSP-----EVD 723
TF + + E +T+ E+LL + L +P E +
Sbjct: 78 ARMGVVRTFQHVRLFRE--------MTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESE 129
Query: 724 SETRKMFIDEVMELVEL-NPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEP 782
+ R E + L+E N RQ+ L+ Q++RL IA +V P I+ +DEP
Sbjct: 130 ALDRAATWLERVGLLEHAN--RQA-------GNLAYGQQRRLEIARCMVTQPEILMLDEP 180
Query: 783 TSGLD 787
+GL+
Sbjct: 181 AAGLN 185
|
Length = 255 |
| >gnl|CDD|226927 COG4555, NatA, ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 49.3 bits (118), Expect = 3e-06
Identities = 33/116 (28%), Positives = 49/116 (42%), Gaps = 7/116 (6%)
Query: 47 TDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSST 106
K L L D VG S G K++V +V L +DE ++GLD T
Sbjct: 114 IAELSKRLQLLEYLDRRVG-----EFSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRT 168
Query: 107 TFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLE 162
+ + ++Q N G AVI E L D +I+L G++V +G E +
Sbjct: 169 RRKFHDFIKQL--KNEGRAVIFSSHIMQEVEALCDRVIVLHKGEVVLEGSIEALDA 222
|
Length = 245 |
| >gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 51.0 bits (122), Expect = 3e-06
Identities = 54/213 (25%), Positives = 89/213 (41%), Gaps = 17/213 (7%)
Query: 632 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK----QETF 687
L+G+ RPG L G +GAGK+TLM +L+G G G I SG P K ++T
Sbjct: 17 LDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTE 76
Query: 688 ARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQ-S 746
Q P +++ E++ L E+ +M + M L N LR+
Sbjct: 77 RAGIVIIHQELTLVPELSVAENIF------LGNEITLPGGRMAYNA-MYLRAKNLLRELQ 129
Query: 747 LVGLP---GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD 803
L V Q++ + IA L ++ +DEP+S L + I++ +R+
Sbjct: 130 LDADNVTRPVGDYGGGQQQLVEIAKALNKQARLLILDEPSSSLTEKETEILLDIIRDL-- 187
Query: 804 TGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEI 836
V C ++ +A + + R GQ +
Sbjct: 188 KAHGVACVYISHKLNEVKAVCDTICVIRDGQHV 220
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 500 |
| >gnl|CDD|172744 PRK14256, PRK14256, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 49.6 bits (118), Expect = 3e-06
Identities = 43/162 (26%), Positives = 76/162 (46%), Gaps = 13/162 (8%)
Query: 635 VSGAFRPGVLTALMGVSGAGKTTL---MDVLAGRKTGGYITGNITISG---YPKKQE--T 686
VS F +TA++G SG GK+T+ ++ + +TG I + Y + + +
Sbjct: 23 VSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVDPVS 82
Query: 687 FARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVEL-NPLRQ 745
R G Q P ++IY++++ A +L+ V+ ++ ++ V L + ++
Sbjct: 83 IRRRVGMVFQKPNPFPAMSIYDNVI--AGYKLNGRVNRSEADEIVESSLKRVALWDEVKD 140
Query: 746 SLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 787
L LS Q++RL IA + P +I MDEP S LD
Sbjct: 141 RLKS--NAMELSGGQQQRLCIARTIAVKPEVILMDEPASALD 180
|
Length = 252 |
| >gnl|CDD|237452 PRK13632, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 50.0 bits (120), Expect = 3e-06
Identities = 59/229 (25%), Positives = 96/229 (41%), Gaps = 38/229 (16%)
Query: 626 EDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYPKK 683
+ L VS G A++G +G+GK+T+ +L G + G I I G
Sbjct: 19 NSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSG----EIKIDGITIS 74
Query: 684 QETFARIS---GYCEQN-DIHSPFV--TIYESLLFSAWLRLSPEVDSETRKMFIDEVMEL 737
+E I G QN D + F+ T+ + + F + V + K ID++ +
Sbjct: 75 KENLKEIRKKIGIIFQNPD--NQFIGATVEDDIAFGLENKK---VPPKKMKDIIDDLAKK 129
Query: 738 VELNPL--RQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV- 794
V + ++ LS Q++R+ IA L NP II DE TS LD + +
Sbjct: 130 VGMEDYLDKEPQ-------NLSGGQKQRVAIASVLALNPEIIIFDESTSMLDPKGKREIK 182
Query: 795 --MRTVRNTVDTGRTVVCTIHQPSIDIFEAF--DELFLMKRGGQEIYVG 839
M +R T +T++ H D+ EA D++ + G+ I G
Sbjct: 183 KIMVDLRKTRK--KTLISITH----DMDEAILADKVIVFS-EGKLIAQG 224
|
Length = 271 |
| >gnl|CDD|181906 PRK09493, glnQ, glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 49.7 bits (119), Expect = 3e-06
Identities = 51/191 (26%), Positives = 86/191 (45%), Gaps = 12/191 (6%)
Query: 628 KLVLLNGVSGAFRPGVLTALMGVSGAGKTTLM---DVLAGRKTGGYITGNITISGYPKKQ 684
+L+ + G + ++G SG+GK+TL+ + L +G I + ++ PK
Sbjct: 13 PTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVND-PKVD 71
Query: 685 ETFARI-SGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPL 743
E R +G Q P +T E+++F LR+ E K EL+ L
Sbjct: 72 ERLIRQEAGMVFQQFYLFPHLTALENVMFGP-LRVRGASKEEAEKQ----ARELLAKVGL 126
Query: 744 RQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD 803
+ P S LS Q++R+ IA L P ++ DEPTS LD V++ +++ +
Sbjct: 127 AERAHHYP--SELSGGQQQRVAIARALAVKPKLMLFDEPTSALDPELRHEVLKVMQDLAE 184
Query: 804 TGRTVVCTIHQ 814
G T+V H+
Sbjct: 185 EGMTMVIVTHE 195
|
Length = 240 |
| >gnl|CDD|213261 cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system | Back alignment and domain information |
|---|
Score = 49.6 bits (119), Expect = 4e-06
Identities = 56/215 (26%), Positives = 90/215 (41%), Gaps = 27/215 (12%)
Query: 630 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYI-TGNITISGYPKKQ-- 684
V +N VS R G + +MG+SG+GK+TL+ + T G + I+ +K+
Sbjct: 38 VGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELR 97
Query: 685 ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLR 744
E + Q+ P T+ E++ F ++ P + E R E +ELV L
Sbjct: 98 ELRRKKISMVFQSFALLPHRTVLENVAFGLEVQGVPRAEREERAA---EALELVGLEGWE 154
Query: 745 QSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD----ARAAAIVMRTVRN 800
LS ++R+ +A L +P I+ MDE S LD ++R
Sbjct: 155 HKYPD-----ELSGGMQQRVGLARALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAE 209
Query: 801 TVDTGRTVVCTIHQPSIDIFEAF---DELFLMKRG 832
+T+V H D+ EA D + +MK G
Sbjct: 210 ---LQKTIVFITH----DLDEALRLGDRIAIMKDG 237
|
This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 269 |
| >gnl|CDD|183133 PRK11432, fbpC, ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 50.1 bits (120), Expect = 4e-06
Identities = 62/222 (27%), Positives = 99/222 (44%), Gaps = 48/222 (21%)
Query: 642 GVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDI-- 699
G + L+G SG GKTT++ ++AG + G I I G + T I +Q DI
Sbjct: 32 GTMVTLLGPSGCGKTTVLRLVAGLEKP--TEGQIFIDG---EDVTHRSI----QQRDICM 82
Query: 700 --HS----PFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGV 753
S P +++ E++ + L++ V E RK + E +ELV+L V
Sbjct: 83 VFQSYALFPHMSLGENVGYG--LKML-GVPKEERKQRVKEALELVDLAGFEDRYV----- 134
Query: 754 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-----DTGRTV 808
+S Q++R+ +A L+ P ++ DEP S LDA + R++R + T
Sbjct: 135 DQISGGQQQRVALARALILKPKVLLFDEPLSNLDAN----LRRSMREKIRELQQQFNITS 190
Query: 809 VCTIHQPSIDIFEAF---DELFLMKRG-------GQEIYVGP 840
+ H S EAF D + +M +G QE+Y P
Sbjct: 191 LYVTHDQS----EAFAVSDTVIVMNKGKIMQIGSPQELYRQP 228
|
Length = 351 |
| >gnl|CDD|226967 COG4608, AppF, ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 49.5 bits (119), Expect = 4e-06
Identities = 42/165 (25%), Positives = 60/165 (36%), Gaps = 59/165 (35%)
Query: 632 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYPKKQETFAR 689
++GVS + + G L+G SG GK+TL ++ G T G I G
Sbjct: 29 VDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSG----EILFEG---------- 74
Query: 690 ISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPL------ 743
DI ++ E R+ + E++E V L
Sbjct: 75 -------KDIT--------------------KLSKEERRERVLELLEKVGLPEEFLYRYP 107
Query: 744 RQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 788
+ LS QR+R+ IA L NP +I DEP S LD
Sbjct: 108 HE----------LSGGQRQRIGIARALALNPKLIVADEPVSALDV 142
|
Length = 268 |
| >gnl|CDD|226961 COG4598, HisP, ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 49.0 bits (117), Expect = 6e-06
Identities = 21/59 (35%), Positives = 34/59 (57%)
Query: 756 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQ 814
LS Q++R+ IA L P ++ DEPTS LD V++ +++ + GRT+V H+
Sbjct: 153 LSGGQQQRVAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEEGRTMVVVTHE 211
|
Length = 256 |
| >gnl|CDD|237652 PRK14275, PRK14275, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 48.7 bits (116), Expect = 7e-06
Identities = 59/241 (24%), Positives = 99/241 (41%), Gaps = 49/241 (20%)
Query: 574 QSSSQSLSLAEAEASR-----PKKKGMVLPFEPHSLTFDEVVYSVDMPEEMKVQGVLEDK 628
++ S S A+R P++K + +PH + + +Y + KV + K
Sbjct: 6 EAKETSKSAPAETATRDIYLPPERKKVSGGGKPHVVAKNFSIYYGEFEAVKKVNADILSK 65
Query: 629 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVL--------AGRKTGGYITGNITISGY 680
V TA++G SG GK+T + + + TG + I G
Sbjct: 66 YV--------------TAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGK 111
Query: 681 PKKQETFARISGYCEQNDIHSPF-VTIYESLLFSAWL-------RLSPEVDSETRKMFI- 731
+ + G Q +PF +I++++ + L +L V+ RK +
Sbjct: 112 FTDEVLLRKKIGMVFQKP--NPFPKSIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALW 169
Query: 732 DEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA 791
DEV + ++ N L GLS Q++RL +A L P I+ +DEPTS LD +A
Sbjct: 170 DEVSDRLDKNAL-----------GLSGGQQQRLCVARTLAVEPEILLLDEPTSALDPKAT 218
Query: 792 A 792
A
Sbjct: 219 A 219
|
Length = 286 |
| >gnl|CDD|235150 PRK03695, PRK03695, vitamin B12-transporter ATPase; Provisional | Back alignment and domain information |
|---|
Score = 48.4 bits (116), Expect = 8e-06
Identities = 56/208 (26%), Positives = 88/208 (42%), Gaps = 30/208 (14%)
Query: 619 MKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITIS 678
M++ V L +S R G + L+G +GAGK+TL+ +AG G +G+I +
Sbjct: 1 MQLNDVAVSTR--LGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLPG---SGSIQFA 55
Query: 679 G-----YPKKQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDE 733
G + AR Y Q + +++ L L + +E ++E
Sbjct: 56 GQPLEAWS--AAELARHRAYLSQQQTPPFAMPVFQYLT----LHQPDKTRTEAVASALNE 109
Query: 734 VMELVELNPLRQSLVGLPGVSGLS-TE-QRKRLTIAVEL----VANPS--IIFMDEPTSG 785
V E + L +G V+ LS E QR RL AV L NP+ ++ +DEP +
Sbjct: 110 VAEALGL----DDKLGRS-VNQLSGGEWQRVRLA-AVVLQVWPDINPAGQLLLLDEPMNS 163
Query: 786 LDARAAAIVMRTVRNTVDTGRTVVCTIH 813
LD A + R + G VV + H
Sbjct: 164 LDVAQQAALDRLLSELCQQGIAVVMSSH 191
|
Length = 248 |
| >gnl|CDD|172747 PRK14259, PRK14259, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 48.6 bits (116), Expect = 8e-06
Identities = 52/168 (30%), Positives = 78/168 (46%), Gaps = 42/168 (25%)
Query: 642 GVLTALMGVSGAGKTTLM-------DVLAGRKTGGYITGNITISG---YPKK---QETFA 688
G +TAL+G SG GK+T++ D++ G + G + G Y + E
Sbjct: 39 GKVTALIGPSGCGKSTVLRSLNRMNDLIEGCS----LKGRVLFDGTDLYDPRVDPVEVRR 94
Query: 689 RISGYCEQNDIHSPF-VTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSL 747
RI +Q + PF +IYE++ F A R++ + ++ ELVE LR++
Sbjct: 95 RIGMVFQQPN---PFPKSIYENIAFGA--RING---------YTGDMDELVE-RSLRKAA 139
Query: 748 V--------GLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 787
V G S LS Q++RL IA + P +I MDEP S LD
Sbjct: 140 VWDECKDKLNESGYS-LSGGQQQRLCIARTIAIEPEVILMDEPCSALD 186
|
Length = 269 |
| >gnl|CDD|131367 TIGR02314, ABC_MetN, D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 49.1 bits (117), Expect = 8e-06
Identities = 50/174 (28%), Positives = 81/174 (46%), Gaps = 16/174 (9%)
Query: 620 KVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLM---DVLAGRKTGGYITGNIT 676
KV + LN VS G + ++G SGAGK+TL+ ++L +G I
Sbjct: 9 KVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQD 68
Query: 677 ISGYPKKQETFARIS-GYCEQ--NDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDE 733
++ + T AR G Q N + S T++ ++ L +P+ + + + + E
Sbjct: 69 LTTLSNSELTKARRQIGMIFQHFNLLSSR--TVFGNVALPLELDNTPKDEIKRK---VTE 123
Query: 734 VMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 787
++ LV L S P S LS Q++R+ IA L +NP ++ DE TS LD
Sbjct: 124 LLALVGLGDKHDSY---P--SNLSGGQKQRVAIARALASNPKVLLCDEATSALD 172
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. Length = 343 |
| >gnl|CDD|213228 cd03261, ABC_Org_Solvent_Resistant, ATP-binding cassette transport system involved in resistant to organic solvents | Back alignment and domain information |
|---|
Score = 47.9 bits (115), Expect = 1e-05
Identities = 35/118 (29%), Positives = 48/118 (40%), Gaps = 27/118 (22%)
Query: 63 MVG-----DEMIRGISGGQKKRVTTGEMMVGPALA---------LFMDEISTGLDSSTTF 108
VG D +SGG KKRV ALA L DE + GLD +
Sbjct: 123 AVGLRGAEDLYPAELSGGMKKRV---------ALARALALDPELLLYDEPTAGLDPIASG 173
Query: 109 QIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLEFFAS 166
I + L +++ G I + + + D I +L DG+IV +G E E AS
Sbjct: 174 VIDD-LIRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDGKIVAEGTPE---ELRAS 227
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|213184 cd03217, ABC_FeS_Assembly, ABC-type transport system involved in Fe-S cluster assembly, ATPase component | Back alignment and domain information |
|---|
Score = 47.1 bits (113), Expect = 1e-05
Identities = 30/99 (30%), Positives = 45/99 (45%), Gaps = 13/99 (13%)
Query: 71 GISGGQKKRVTTGEMMV-GPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISL 129
G SGG+KKR ++++ P LA+ DE +GLD + + + +I+
Sbjct: 104 GFSGGEKKRNEILQLLLLEPDLAIL-DEPDSGLDIDALRLVAEVINKLREEGKSVLIITH 162
Query: 130 LQPAPETYDLFDDII-----LLSDGQIVYQGPRELVLEF 163
Q L D I +L DG+IV G +EL LE
Sbjct: 163 YQ------RLLDYIKPDRVHVLYDGRIVKSGDKELALEI 195
|
Biosynthesis of iron-sulfur clusters (Fe-S) depends on multi-protein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. Length = 200 |
| >gnl|CDD|182592 PRK10619, PRK10619, histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 48.0 bits (114), Expect = 1e-05
Identities = 21/59 (35%), Positives = 34/59 (57%)
Query: 756 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQ 814
LS Q++R++IA L P ++ DEPTS LD V+R ++ + G+T+V H+
Sbjct: 153 LSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHE 211
|
Length = 257 |
| >gnl|CDD|182893 PRK11000, PRK11000, maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 48.9 bits (117), Expect = 1e-05
Identities = 47/153 (30%), Positives = 76/153 (49%), Gaps = 20/153 (13%)
Query: 649 GVSGAGKTTLMDVLAGRK---TGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVT 705
G SG GK+TL+ ++AG + +G G ++ P + R G Q+ P ++
Sbjct: 36 GPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPPAE----RGVGMVFQSYALYPHLS 91
Query: 706 IYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPL--RQSLVGLPGVSGLSTEQRKR 763
+ E++ F L+L+ E +++V E+++L L R+ LS QR+R
Sbjct: 92 VAENMSFG--LKLA-GAKKEEINQRVNQVAEVLQLAHLLDRKP-------KALSGGQRQR 141
Query: 764 LTIAVELVANPSIIFMDEPTSGLDARAAAIVMR 796
+ I LVA PS+ +DEP S LDA A + MR
Sbjct: 142 VAIGRTLVAEPSVFLLDEPLSNLDA-ALRVQMR 173
|
Length = 369 |
| >gnl|CDD|172730 PRK14242, PRK14242, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 47.9 bits (114), Expect = 1e-05
Identities = 52/180 (28%), Positives = 77/180 (42%), Gaps = 34/180 (18%)
Query: 632 LNGVSGAFRPGVLTALMGVSGAGKTTLM-------DVLAGRKTGGYIT-GNITISGYPKK 683
L+ +S F +TAL+G SG GK+T + D++ G + G I I
Sbjct: 22 LHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVD 81
Query: 684 QETFARISGYCEQNDIHSPF-VTIYESLLFSAWLR---------LSPEVDSETRKMFI-D 732
R G Q +PF +I+E++ + LR L+ V+ R + D
Sbjct: 82 VVELRRRVGMVFQKP--NPFPKSIFENVAYG--LRVNGVKDKAYLAERVERSLRHAALWD 137
Query: 733 EVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 792
EV + L +S +GL G Q++RL IA L P ++ MDEP S LD A
Sbjct: 138 EVKD-----RLHESALGLSG------GQQQRLCIARALAVEPEVLLMDEPASALDPIATQ 186
|
Length = 253 |
| >gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Score = 49.0 bits (117), Expect = 1e-05
Identities = 55/240 (22%), Positives = 100/240 (41%), Gaps = 38/240 (15%)
Query: 626 EDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG----RKTGGYITGNITIS--- 678
+ K VL N +S G + ++G SGAGK+ LM VL G T G I ++ +
Sbjct: 11 DGKEVLKN-ISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKC 69
Query: 679 GYPKKQETFARISGYC------EQNDIHSPFVTIYESLL----------FSAW------- 715
GY ++ C E+ D + + + F+ +
Sbjct: 70 GYVERPSKVGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLD 129
Query: 716 --LRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVAN 773
L E+ E ++ + ++L+E+ L + + LS +++R+ +A +L
Sbjct: 130 NVLEALEEIGYEGKEA-VGRAVDLIEMVQLSHRITHI--ARDLSGGEKQRVVLARQLAKE 186
Query: 774 PSIIFMDEPTSGLDARAAAIVMRTVRNTV-DTGRTVVCTIHQPSIDIFEAFDELFLMKRG 832
P + DEPT LD + A +V + V +G ++V T H P + I + D+ ++ G
Sbjct: 187 PFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPEV-IEDLSDKAIWLENG 245
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520 |
| >gnl|CDD|237646 PRK14237, PRK14237, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 47.8 bits (114), Expect = 1e-05
Identities = 50/187 (26%), Positives = 75/187 (40%), Gaps = 58/187 (31%)
Query: 632 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARIS 691
+ G+ F +TAL+G SG+GK+T + L R N TI AR++
Sbjct: 36 IKGIDMQFEKNKITALIGPSGSGKSTYLRSL-NRM-------NDTIDI--------ARVT 79
Query: 692 G--YCEQNDIHSPFVTIYE-----SLLFSAWLRLSP-------------EVDSETRKMFI 731
G DI+ + +YE ++F R +P E K +
Sbjct: 80 GQILYRGIDINRKEINVYEMRKHIGMVFQ---RPNPFAKSIYENITFALERAGVKDKKVL 136
Query: 732 DEVMELVELNPLRQSLV-----------GLPGVSGLSTEQRKRLTIAVELVANPSIIFMD 780
DE++E L+Q+ + L LS Q++RL IA + P I+ MD
Sbjct: 137 DEIVE----TSLKQAALWDQVKDDLHKSAL----TLSGGQQQRLCIARAIAVKPDILLMD 188
Query: 781 EPTSGLD 787
EP S LD
Sbjct: 189 EPASALD 195
|
Length = 267 |
| >gnl|CDD|181939 PRK09544, znuC, high-affinity zinc transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 47.8 bits (114), Expect = 1e-05
Identities = 47/162 (29%), Positives = 74/162 (45%), Gaps = 33/162 (20%)
Query: 631 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYPKKQETFA 688
+L+ VS +PG + L+G +GAGK+TL+ V+ G G I K+
Sbjct: 19 VLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVI-----------KRNGKL 67
Query: 689 RISGYCEQN---DIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQ 745
RI GY Q D P L + +LRL P +K I ++ V+
Sbjct: 68 RI-GYVPQKLYLDTTLP-------LTVNRFLRLRPGT----KKEDILPALKRVQ----AG 111
Query: 746 SLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 787
L+ P + LS + +R+ +A L+ P ++ +DEPT G+D
Sbjct: 112 HLIDAP-MQKLSGGETQRVLLARALLNRPQLLVLDEPTQGVD 152
|
Length = 251 |
| >gnl|CDD|221721 pfam12698, ABC2_membrane_3, ABC-2 family transporter protein | Back alignment and domain information |
|---|
Score = 48.1 bits (115), Expect = 1e-05
Identities = 22/111 (19%), Positives = 44/111 (39%)
Query: 1036 IPYILVQSVVYGAIVYAMIGFEWTAAKFFWYIFFMYFTLLFFTFYGMMAVALTPNHHIAA 1095
+ +LV + I+ + G + L + G + +L N A
Sbjct: 145 LGDLLVGLIQLLIILLLLFGLGIPFGNLLLLLLLFLLYGLAYIALGALLGSLFKNSEAAI 204
Query: 1096 IVSTLFYGLWNVFSGFIIPRPRIPIWWRWYYWANPIAWTLYGLVASQFGDM 1146
+V ++ L + F G + P P +P + +W + P + GL+ +GD+
Sbjct: 205 LVISILILLLSGFFGGLFPLPNMPSFLQWIFSIIPFFAPIDGLLRIIYGDL 255
|
This family is related to the ABC-2 membrane transporter family pfam01061. Length = 278 |
| >gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Score = 49.0 bits (117), Expect = 1e-05
Identities = 39/158 (24%), Positives = 71/158 (44%), Gaps = 32/158 (20%)
Query: 645 TALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ---ETFARISGYCEQNDIHS 701
T ++G+SG+GK+TL +L G +G I ++G+ K T + Y Q
Sbjct: 503 TTIVGMSGSGKSTLAKLLVGFFQAR--SGEILLNGFSLKDIDRHTLRQFINYLPQE---- 556
Query: 702 PFV---TIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLP------- 751
P++ +I E+LL A + DE+ E+ ++ + +P
Sbjct: 557 PYIFSGSILENLLLGA-----------KENVSQDEIWAACEIAEIKDDIENMPLGYQTEL 605
Query: 752 --GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 787
S +S Q++R+ +A L+ + ++ +DE TS LD
Sbjct: 606 SEEGSSISGGQKQRIALARALLTDSKVLILDESTSNLD 643
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair, Transport and binding proteins, Other]. Length = 708 |
| >gnl|CDD|224047 COG1122, CbiO, ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 46.9 bits (112), Expect = 2e-05
Identities = 30/136 (22%), Positives = 62/136 (45%), Gaps = 8/136 (5%)
Query: 28 DIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVT-TGEMM 86
++ ++ + +E L+++GL+ D +SGGQK+RV G +
Sbjct: 100 EVAFGLENLGLPREEIEERVAEALELVGLEELLD-----RPPFNLSGGQKQRVAIAGVLA 154
Query: 87 VGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILL 146
+GP + L +DE + GLD +++ L++ + G +I + + D +++L
Sbjct: 155 MGPEI-LLLDEPTAGLDPKGRRELLELLKK-LKEEGGKTIIIVTHDLELVLEYADRVVVL 212
Query: 147 SDGQIVYQGPRELVLE 162
DG+I+ G +
Sbjct: 213 DDGKILADGDPAEIFN 228
|
Length = 235 |
| >gnl|CDD|213223 cd03256, ABC_PhnC_transporter, ATP-binding cassette domain of the binding protein-dependent phosphonate transport system | Back alignment and domain information |
|---|
Score = 46.8 bits (112), Expect = 2e-05
Identities = 38/116 (32%), Positives = 59/116 (50%), Gaps = 18/116 (15%)
Query: 49 YYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGE-MMVGPALALFMDEISTGLDSSTT 107
L+ +GL A D++ SGGQ++RV +M P L L DE LD +++
Sbjct: 127 AALERVGLLDKAYQRA-DQL----SGGQQQRVAIARALMQQPKLIL-ADEPVASLDPASS 180
Query: 108 FQIVNCLRQNIHINSG-TAVISLLQPAPETYDL----FDDIILLSDGQIVYQGPRE 158
Q+++ L++ I+ G T ++SL Q DL D I+ L DG+IV+ GP
Sbjct: 181 RQVMDLLKR-INREEGITVIVSLHQV-----DLAREYADRIVGLKDGRIVFDGPPA 230
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 241 |
| >gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 48.3 bits (116), Expect = 2e-05
Identities = 52/241 (21%), Positives = 84/241 (34%), Gaps = 69/241 (28%)
Query: 600 EPHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLM 659
EP E V V + G + D VS R G + + G+ GAG+T L
Sbjct: 253 EPPEEGIGEPVLEV---RNLSGGGKVRD-------VSFTVRAGEILGIAGLVGAGRTELA 302
Query: 660 DVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSP---------FVT----- 705
L G + +G I + G + I SP +V
Sbjct: 303 RALFGAR--PASSGEILLDG---------------KPVRIRSPRDAIKAGIAYVPEDRKS 345
Query: 706 --------IYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLS 757
I E++ ++ R S R+ ID E + L + S
Sbjct: 346 EGLVLDMSIAENITLASLRRFS-------RRGLIDRRKERALAERYIRRL----RIKTPS 394
Query: 758 TEQR---------KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTV 808
EQ +++ +A L +P ++ +DEPT G+D A A + R +R G+ +
Sbjct: 395 PEQPIGTLSGGNQQKVVLARWLATDPKVLILDEPTRGIDVGAKAEIYRLIRELAAEGKAI 454
Query: 809 V 809
+
Sbjct: 455 L 455
|
Length = 500 |
| >gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 48.7 bits (117), Expect = 2e-05
Identities = 51/229 (22%), Positives = 88/229 (38%), Gaps = 29/229 (12%)
Query: 596 VLPFEPHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGK 655
VL T EVV V+ + + + VS R G + + GV+G G+
Sbjct: 243 VLRVVKPPSTPGEVVLEVE-----DLSVKDRRGVTAVKDVSFEVRAGEIVGIAGVAGNGQ 297
Query: 656 TTLMDVLAG-RKTGGYITGNITISGYPKKQETFARIS-----GYCEQNDIH---SPFVTI 706
+ L++ ++G RK +G I ++G R Y ++ +++
Sbjct: 298 SELVEAISGLRKP---ASGRILLNGKDVLGRLSPRERRRLGLAYVPEDRHGHGLVLDLSL 354
Query: 707 YESLLFSAWLRLSPEVDSETRKMFIDE------VMELVELNPLRQSLVGLPGVSGLSTEQ 760
E+L+ P R F+D EL+E +R P LS
Sbjct: 355 AENLVLG-RHDKKPFS----RGGFLDRRAIRKFARELIEEFDVRAPSPDAP-ARSLSGGN 408
Query: 761 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVV 809
+++L +A EL P ++ +PT GLD A + + D G+ V+
Sbjct: 409 QQKLILARELARRPDLLIAAQPTRGLDVGAIEFIHERLLELRDAGKAVL 457
|
Length = 501 |
| >gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Score = 48.3 bits (115), Expect = 2e-05
Identities = 57/223 (25%), Positives = 94/223 (42%), Gaps = 25/223 (11%)
Query: 632 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYI---TG----NITISGYPK 682
++ VS + G + ++G SGAGKTTL ++AG T G + G ++T G P
Sbjct: 300 VDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPG-PD 358
Query: 683 KQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP 742
+ R G Q P T+ ++L + L L E+ K I M +
Sbjct: 359 GRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGLELPDEL--ARMKAVITLKMVGFDEEK 416
Query: 743 LRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV 802
+ L P LS +R R+ +A L+ P I+ +DEPT +D I V +++
Sbjct: 417 AEEILDKYP--DELSEGERHRVALAQVLIKEPRIVILDEPTGTMD----PITKVDVTHSI 470
Query: 803 -----DTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGP 840
+ +T + H + + D LM R G+ + +G
Sbjct: 471 LKAREEMEQTFIIVSHDMDF-VLDVCDRAALM-RDGKIVKIGD 511
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520 |
| >gnl|CDD|184129 PRK13543, PRK13543, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 47.2 bits (112), Expect = 2e-05
Identities = 45/173 (26%), Positives = 70/173 (40%), Gaps = 13/173 (7%)
Query: 641 PGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIH 700
G + G +GAGKTTL+ VLAG +G I I G + +R Y
Sbjct: 36 AGEALLVQGDNGAGKTTLLRVLAGLLHVE--SGQIQIDGKTATRGDRSRFMAYLGHLPGL 93
Query: 701 SPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQ 760
++ E+L F L ++M + +V L +L V LS Q
Sbjct: 94 KADLSTLENLHFLCGLH-----GRRAKQM-PGSALAIVGLAGYEDTL-----VRQLSAGQ 142
Query: 761 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIH 813
+KRL +A ++ + +DEP + LD +V R + + G + T H
Sbjct: 143 KKRLALARLWLSPAPLWLLDEPYANLDLEGITLVNRMISAHLRGGGAALVTTH 195
|
Length = 214 |
| >gnl|CDD|213257 cd03290, ABCC_SUR1_N, ATP-binding cassette domain of the sulfonylurea receptor, subfamily C | Back alignment and domain information |
|---|
Score = 46.9 bits (111), Expect = 2e-05
Identities = 48/183 (26%), Positives = 88/183 (48%), Gaps = 18/183 (9%)
Query: 642 GVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYPKKQETFARISGYCEQNDI 699
G LT ++G G GK++L+ + G + G + + P + T +R + Y
Sbjct: 27 GQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSR-NRYSVAYAA 85
Query: 700 HSPFV---TIYESLLFSAWLRLSPEVDSETRKMFID--EVMELVELNPL-RQSLVGLPGV 753
P++ T+ E++ F SP + + K D + ++L P Q+ +G G+
Sbjct: 86 QKPWLLNATVEENITFG-----SP-FNKQRYKAVTDACSLQPDIDLLPFGDQTEIGERGI 139
Query: 754 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT--VRNTVDTGRTVVCT 811
+ LS QR+R+ +A L N +I+F+D+P S LD + +M+ ++ D RT+V
Sbjct: 140 N-LSGGQRQRICVARALYQNTNIVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLV 198
Query: 812 IHQ 814
H+
Sbjct: 199 THK 201
|
The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 218 |
| >gnl|CDD|182336 PRK10253, PRK10253, iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 47.3 bits (112), Expect = 2e-05
Identities = 46/160 (28%), Positives = 72/160 (45%), Gaps = 31/160 (19%)
Query: 642 GVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISG-----YPKKQETFARISGYCEQ 696
G TA++G +G GK+TL+ L+ T G++ + G Y K+ AR G Q
Sbjct: 33 GHFTAIIGPNGCGKSTLLRTLSRLMTP--AHGHVWLDGEHIQHYASKE--VARRIGLLAQ 88
Query: 697 NDIHSPFVTIYESL---------LFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSL 747
N +T+ E + LF+ W + + ++ T+ M + L QS
Sbjct: 89 NATTPGDITVQELVARGRYPHQPLFTRWRK--EDEEAVTKAMQATGITHLA-----DQS- 140
Query: 748 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 787
V LS QR+R IA+ L +I+ +DEPT+ LD
Sbjct: 141 -----VDTLSGGQRQRAWIAMVLAQETAIMLLDEPTTWLD 175
|
Length = 265 |
| >gnl|CDD|233209 TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Score = 48.6 bits (116), Expect = 2e-05
Identities = 55/214 (25%), Positives = 95/214 (44%), Gaps = 34/214 (15%)
Query: 632 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYPKKQETFAR 689
L G++ PG + AL+G SG+GK+T+ +L + TGG + + G P Q
Sbjct: 497 LKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGG----QVLLDGVPLVQ----- 547
Query: 690 ISGYCEQNDIHSPFVTI-YESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLV 748
+ + +H + E +LFS +R + +E+M + ++
Sbjct: 548 ----YDHHYLHRQVALVGQEPVLFSGSVR--ENIAYGLTDTPDEEIMAAAKAANAHDFIM 601
Query: 749 GLP-------GVSG--LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 799
P G G LS Q++R+ IA LV P ++ +DE TS LDA + ++
Sbjct: 602 EFPNGYDTEVGEKGSQLSGGQKQRIAIARALVRKPRVLILDEATSALDAE----CEQLLQ 657
Query: 800 NTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRG 832
+ RTV+ H+ S E D++ ++K+G
Sbjct: 658 ESRSRASRTVLLIAHRLS--TVERADQILVLKKG 689
|
[Transport and binding proteins, Other]. Length = 711 |
| >gnl|CDD|237454 PRK13634, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 47.3 bits (113), Expect = 2e-05
Identities = 57/208 (27%), Positives = 93/208 (44%), Gaps = 19/208 (9%)
Query: 635 VSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GNITISGY--PKKQETFAR 689
V+ + G A++G +G+GK+TL+ L G + T G +T G I+ KK + +
Sbjct: 26 VNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLKPLRK 85
Query: 690 ISGYCEQNDIHSPF-VTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP--LRQS 746
G Q H F T+ + + F E D++ + E++ELV L L +S
Sbjct: 86 KVGIVFQFPEHQLFEETVEKDICFGPMNFGVSEEDAKQK---AREMIELVGLPEELLARS 142
Query: 747 LVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV-RNTVDTG 805
L G Q +R+ IA L P ++ +DEPT+GLD + +M + + G
Sbjct: 143 PFELSG------GQMRRVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKG 196
Query: 806 RTVVCTIHQPSIDIFEAFDELFLMKRGG 833
T V H D D++ +M +G
Sbjct: 197 LTTVLVTHSME-DAARYADQIVVMHKGT 223
|
Length = 290 |
| >gnl|CDD|224043 COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 47.3 bits (113), Expect = 3e-05
Identities = 36/134 (26%), Positives = 59/134 (44%), Gaps = 19/134 (14%)
Query: 56 LDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALA-----LFMDEISTGLDSSTTFQI 110
L + + D +SGGQ++RV + ALA L +DE LD+ ++
Sbjct: 122 LRLVQLEGLADRYPAQLSGGQRQRVA-----LARALAVEPKVLLLDEPFGALDAKVRKEL 176
Query: 111 VNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLEFFASMGFR 170
LR+ +H G + + E +L D +++L+ G+I GP + V +
Sbjct: 177 RRWLRK-LHDRLGVTTVFVTHDQEEALELADRVVVLNQGRIEQVGPPDEVYDH------- 228
Query: 171 CPKRKGVADFLQEV 184
P + VA FL EV
Sbjct: 229 -PASRFVARFLGEV 241
|
Length = 345 |
| >gnl|CDD|213224 cd03257, ABC_NikE_OppD_transporters, ATP-binding cassette domain of nickel/oligopeptides specific transporters | Back alignment and domain information |
|---|
Score = 46.3 bits (111), Expect = 3e-05
Identities = 24/94 (25%), Positives = 44/94 (46%), Gaps = 23/94 (24%)
Query: 73 SGGQKKRVTTGEMMVGPALA-----LFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVI 127
SGGQ++RV + ALA L DE ++ LD S QI++ L++ + G ++
Sbjct: 147 SGGQRQRV-----AIARALALNPKLLIADEPTSALDVSVQAQILDLLKK-LQEELGLTLL 200
Query: 128 ------SLLQPAPETYDLFDDIILLSDGQIVYQG 155
++ + D + ++ G+IV +G
Sbjct: 201 FITHDLGVVA------KIADRVAVMYAGKIVEEG 228
|
The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. Length = 228 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 48.0 bits (115), Expect = 3e-05
Identities = 40/135 (29%), Positives = 62/135 (45%), Gaps = 26/135 (19%)
Query: 39 EGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALA-----L 93
EA L+ +GL D D +SGG ++RV M+ ALA L
Sbjct: 125 SRAEARKRAVELLEQVGLP---DPERRDRYPHQLSGGMRQRV-----MIAMALALKPKLL 176
Query: 94 FMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDL------FDDIILLS 147
DE +T LD +T QI++ L+ ++ G AV+ + T+DL D ++++
Sbjct: 177 IADEPTTALDVTTQAQILDLLK-DLQRELGMAVLFI------THDLGVVAELADRVVVMY 229
Query: 148 DGQIVYQGPRELVLE 162
G+IV GP E +L
Sbjct: 230 KGEIVETGPTEEILS 244
|
Length = 539 |
| >gnl|CDD|184210 PRK13651, PRK13651, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 47.4 bits (113), Expect = 3e-05
Identities = 49/216 (22%), Positives = 82/216 (37%), Gaps = 49/216 (22%)
Query: 632 LNGVSGAFRPGVLTALMGVSGAGKTTL---MDVLAGRKTGG--YITGNITISGYPKKQET 686
L+ VS G A++G +G+GKTT ++ L TG +I + K ++
Sbjct: 23 LDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDE------KNKKK 76
Query: 687 FARISGYCEQNDIHSPFV---------------------------TIYESLLFSAWLRLS 719
E+ I TI + ++F +S
Sbjct: 77 TKEKEKVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGP---VS 133
Query: 720 PEVDSETRKMFIDEVMELVEL--NPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSII 777
V E K + +ELV L + L++S L G Q++R+ +A L P +
Sbjct: 134 MGVSKEEAKKRAAKYIELVGLDESYLQRSPFELSG------GQKRRVALAGILAMEPDFL 187
Query: 778 FMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIH 813
DEPT+GLD + ++ N G+T++ H
Sbjct: 188 VFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTH 223
|
Length = 305 |
| >gnl|CDD|215640 PLN03232, PLN03232, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 48.0 bits (114), Expect = 3e-05
Identities = 42/176 (23%), Positives = 80/176 (45%), Gaps = 18/176 (10%)
Query: 631 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARI 690
+L+G+S P ++G +GAGK+++++ L + G I I +
Sbjct: 1251 VLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALF--RIVELEKGRIMIDDCDVAKFGLT-- 1306
Query: 691 SGYCEQNDIHSPFVTIYES-LLFSAWLRLSPEVDSETRKMFIDEVMELVEL-NPLRQSLV 748
D+ I +S +LFS +R + + SE + E +E + + + ++
Sbjct: 1307 -------DLRRVLSIIPQSPVLFSGTVRFNIDPFSEHNDADLWEALERAHIKDVIDRNPF 1359
Query: 749 GL-----PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 799
GL G S QR+ L++A L+ I+ +DE T+ +D R +++ RT+R
Sbjct: 1360 GLDAEVSEGGENFSVGQRQLLSLARALLRRSKILVLDEATASVDVRTDSLIQRTIR 1415
|
Length = 1495 |
| >gnl|CDD|172734 PRK14246, PRK14246, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 46.6 bits (110), Expect = 3e-05
Identities = 51/203 (25%), Positives = 88/203 (43%), Gaps = 22/203 (10%)
Query: 625 LEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVL--------AGRKTGG---YITG 673
+ DK +L + ++ + +MG SG+GK+TL+ VL + K G Y
Sbjct: 20 INDKAILKD-ITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGK 78
Query: 674 NI-TISGYPKKQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFID 732
+I I ++E G Q P ++IY+++ + L+ + K ++
Sbjct: 79 DIFQIDAIKLRKEV-----GMVFQQPNPFPHLSIYDNIAYP--LKSHGIKEKREIKKIVE 131
Query: 733 EVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 792
E + V L + P S LS Q++RLTIA L P ++ MDEPTS +D +
Sbjct: 132 ECLRKVGLWKEVYDRLNSPA-SQLSGGQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQ 190
Query: 793 IVMRTVRNTVDTGRTVVCTIHQP 815
+ + + + +V H P
Sbjct: 191 AIEKLI-TELKNEIAIVIVSHNP 212
|
Length = 257 |
| >gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular activities | Back alignment and domain information |
|---|
Score = 45.1 bits (106), Expect = 3e-05
Identities = 37/204 (18%), Positives = 58/204 (28%), Gaps = 69/204 (33%)
Query: 641 PGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIH 700
PG + ++G G+GKTTL LA I G
Sbjct: 1 PGEVILIVGPPGSGKTTLARALARE--------------LGPPGGGVIYIDG-------- 38
Query: 701 SPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQ 760
E + L Q L+ + G S
Sbjct: 39 -----------------------------------EDILEEVLDQLLLIIVGGKKASGSG 63
Query: 761 RKRLTIAVELV--ANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD------TGRTVVCTI 812
RL +A+ L P ++ +DE TS LDA A+++ + TV+ T
Sbjct: 64 ELRLRLALALARKLKPDVLILDEITSLLDAEQEALLLLLEELRLLLLLKSEKNLTVILTT 123
Query: 813 HQPSI----DIFEAFDELFLMKRG 832
+ + FD ++
Sbjct: 124 NDEKDLGPALLRRRFDRRIVLLLI 147
|
AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. Length = 148 |
| >gnl|CDD|226646 COG4178, COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 47.3 bits (113), Expect = 4e-05
Identities = 53/213 (24%), Positives = 89/213 (41%), Gaps = 21/213 (9%)
Query: 630 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFAR 689
LL+ ++ RPG + G SGAGKT+L+ LAG + +G I P
Sbjct: 407 TLLSELNFEVRPGERLLITGESGAGKTSLLRALAG--LWPWGSGRI---SMPADSALL-- 459
Query: 690 ISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVG 749
+ Q + P T+ E+L + P + + V+ V L L + L
Sbjct: 460 ---FLPQRP-YLPQGTLREALCY-------PNAAPDFSDAELVAVLHKVGLGDLAERLDE 508
Query: 750 L-PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTV 808
LS +++RL A L+ P +F+DE TS LD + + ++ + TV
Sbjct: 509 EDRWDRVLSGGEQQRLAFARLLLHKPKWVFLDEATSALDEETEDRLYQLLKEEL-PDATV 567
Query: 809 VCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPL 841
+ H+P++ F + +L L+ G + P
Sbjct: 568 ISVGHRPTLWNFHS-RQLELLDDAGGQNLKPPA 599
|
Length = 604 |
| >gnl|CDD|184590 PRK14249, PRK14249, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 46.2 bits (109), Expect = 4e-05
Identities = 56/195 (28%), Positives = 88/195 (45%), Gaps = 38/195 (19%)
Query: 615 MPEEMKVQGV--LEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLM-------DVLAG- 664
M ++K++GV K +L ++ F +TA++G SG GK+TL+ D+++G
Sbjct: 1 MDPKIKIRGVNFFYHKHQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGA 60
Query: 665 RKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPF-VTIYESLLFSAWLRLSPEVD 723
R G + N I + G Q +PF +I++++ F P +
Sbjct: 61 RLEGAVLLDNENIYSPNLDVVNLRKRVGMVFQQP--NPFPKSIFDNVAFG------PRML 112
Query: 724 SETRKMFIDEVMELVELNPLRQSLV-----------GLPGVSGLSTEQRKRLTIAVELVA 772
T + +DEV+E LRQ+ + GL LS Q++RL IA L
Sbjct: 113 GTTAQSRLDEVVE----KSLRQAALWDEVKDNLHKSGL----ALSGGQQQRLCIARVLAI 164
Query: 773 NPSIIFMDEPTSGLD 787
P +I MDEP S LD
Sbjct: 165 EPEVILMDEPCSALD 179
|
Length = 251 |
| >gnl|CDD|182716 PRK10771, thiQ, thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 45.7 bits (109), Expect = 4e-05
Identities = 45/156 (28%), Positives = 81/156 (51%), Gaps = 25/156 (16%)
Query: 640 RPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFAR--ISGYCEQN 697
G A++G SGAGK+TL++++AG T +G++T++G +R +S ++N
Sbjct: 23 ERGERVAILGPSGAGKSTLLNLIAGFLTPA--SGSLTLNGQDHTTTPPSRRPVSMLFQEN 80
Query: 698 DIHSPFVTIYE--SLLFSAWLRLSPE----VDSETRKMFIDEVMELVELNPLRQSLVGLP 751
++ +T+ + L + L+L+ + + R+M I++++ R LP
Sbjct: 81 NLF-SHLTVAQNIGLGLNPGLKLNAAQREKLHAIARQMGIEDLLA-------R-----LP 127
Query: 752 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 787
G LS QR+R+ +A LV I+ +DEP S LD
Sbjct: 128 G--QLSGGQRQRVALARCLVREQPILLLDEPFSALD 161
|
Length = 232 |
| >gnl|CDD|214372 CHL00131, ycf16, sulfate ABC transporter protein; Validated | Back alignment and domain information |
|---|
Score = 46.2 bits (110), Expect = 5e-05
Identities = 49/197 (24%), Positives = 88/197 (44%), Gaps = 23/197 (11%)
Query: 631 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISG---YPKKQETF 687
+L G++ + G + A+MG +G+GK+TL V+AG + G+I G + E
Sbjct: 22 ILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEPEER 81
Query: 688 ARISGYCE-QNDIHSPFVTIYESLLFSAWLRLS----------PEVDSETRKMFIDEVME 736
A + + Q I P V+ + +LRL+ PE+D I+E ++
Sbjct: 82 AHLGIFLAFQYPIEIPGVSNAD------FLRLAYNSKRKFQGLPELDPLEFLEIINEKLK 135
Query: 737 LVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR 796
LV ++P S + G S ++KR I + + + +DE SGLD A I+
Sbjct: 136 LVGMDP---SFLSRNVNEGFSGGEKKRNEILQMALLDSELAILDETDSGLDIDALKIIAE 192
Query: 797 TVRNTVDTGRTVVCTIH 813
+ + + +++ H
Sbjct: 193 GINKLMTSENSIILITH 209
|
Length = 252 |
| >gnl|CDD|183226 PRK11607, potG, putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 46.8 bits (111), Expect = 5e-05
Identities = 63/240 (26%), Positives = 100/240 (41%), Gaps = 30/240 (12%)
Query: 635 VSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKT---GGYITGNITISGYPKKQETFARIS 691
VS G + AL+G SG GK+TL+ +LAG + G + + +S P Q R
Sbjct: 38 VSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPPYQ----RPI 93
Query: 692 GYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLP 751
Q+ P +T+ +++ F + D + V E++ L +++ P
Sbjct: 94 NMMFQSYALFPHMTVEQNIAFGL------KQDKLPKAEIASRVNEMLGLVHMQEFAKRKP 147
Query: 752 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVC 810
LS QR+R+ +A L P ++ +DEP LD + + V + ++ G T V
Sbjct: 148 --HQLSGGQRQRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVM 205
Query: 811 TIHQPSIDIFEAFD---ELFLMKRGG-------QEIYVGPLGRHSCHLISYFEAIPGVQK 860
H D EA + +M RG +EIY P R+S I GV K
Sbjct: 206 VTH----DQEEAMTMAGRIAIMNRGKFVQIGEPEEIYEHPTTRYSAEFIGSVNVFEGVLK 261
|
Length = 377 |
| >gnl|CDD|131377 TIGR02324, CP_lyasePhnL, phosphonate C-P lyase system protein PhnL | Back alignment and domain information |
|---|
Score = 45.5 bits (108), Expect = 5e-05
Identities = 51/209 (24%), Positives = 87/209 (41%), Gaps = 36/209 (17%)
Query: 628 KLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETF 687
+L +L VS G AL G SGAGK+TL+ L Y+ + I + + +
Sbjct: 20 RLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSL----YANYLPDSGRI--LVRHEGAW 73
Query: 688 ARISGYCEQNDIHSPFVTI-YESLLFSAWLRLSPEVDSETRKMFIDEVME-LVE------ 739
++ + + TI Y S +LR+ P V + ++ V E L+E
Sbjct: 74 VDLAQASPREVLEVRRKTIGY----VSQFLRVIPRVSA------LEVVAEPLLERGVPRE 123
Query: 740 ---------LNPLR--QSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 788
L L + L LP + S +++R+ IA +A+ I+ +DEPT+ LDA
Sbjct: 124 AARARARELLARLNIPERLWHLPP-ATFSGGEQQRVNIARGFIADYPILLLDEPTASLDA 182
Query: 789 RAAAIVMRTVRNTVDTGRTVVCTIHQPSI 817
+V+ + G ++ H +
Sbjct: 183 ANRQVVVELIAEAKARGAALIGIFHDEEV 211
|
Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. Length = 224 |
| >gnl|CDD|132050 TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 46.0 bits (109), Expect = 6e-05
Identities = 48/204 (23%), Positives = 89/204 (43%), Gaps = 28/204 (13%)
Query: 629 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISG--------- 679
L +L+G++ + G AL+G SG+GK+T++ +L + G I + G
Sbjct: 13 LTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLE--PIDEGQIQVEGEQLYHMPGR 70
Query: 680 ----YPKKQETFARIS---GYCEQNDIHSPFVTIYESLLFSAWLRLS-PEVDSETRKMFI 731
P ++ ++ G Q+ P T+ +++ + L L ++E R
Sbjct: 71 NGPLVPADEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKR---- 126
Query: 732 DEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA 791
MEL+++ L +P + LS Q++R+ IA L P ++ DE TS LD
Sbjct: 127 --AMELLDMVGLADKADHMP--AQLSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELV 182
Query: 792 AIVMRTVRN-TVDTGRTVVCTIHQ 814
V+ +R + T++ H+
Sbjct: 183 GEVLNVIRRLASEHDLTMLLVTHE 206
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. Length = 252 |
| >gnl|CDD|182829 PRK10908, PRK10908, cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Score = 45.6 bits (108), Expect = 6e-05
Identities = 50/191 (26%), Positives = 87/191 (45%), Gaps = 22/191 (11%)
Query: 632 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYI-TGNITISGYPKKQETFA 688
L GV+ RPG + L G SGAGK+TL+ ++ G R + G I I+ ++ F
Sbjct: 18 LQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFL 77
Query: 689 RIS-GYCEQNDIHSPFV--TIYESLLFSAWLRLSPEVDSETR-KMFIDEV--MELVELNP 742
R G Q+ H + T+Y+++ + + D R +D+V ++ + P
Sbjct: 78 RRQIGMIFQD--HHLLMDRTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDKAKNFP 135
Query: 743 LRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV 802
++ LS +++R+ IA +V P+++ DEPT LD + ++R
Sbjct: 136 IQ-----------LSGGEQQRVGIARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFN 184
Query: 803 DTGRTVVCTIH 813
G TV+ H
Sbjct: 185 RVGVTVLMATH 195
|
Length = 222 |
| >gnl|CDD|182528 PRK10535, PRK10535, macrolide transporter ATP-binding /permease protein; Provisional | Back alignment and domain information |
|---|
Score = 47.0 bits (112), Expect = 6e-05
Identities = 23/64 (35%), Positives = 34/64 (53%)
Query: 754 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIH 813
S LS Q++R++IA L+ +I DEPT LD+ + VM + D G TV+ H
Sbjct: 143 SQLSGGQQQRVSIARALMNGGQVILADEPTGALDSHSGEEVMAILHQLRDRGHTVIIVTH 202
Query: 814 QPSI 817
P +
Sbjct: 203 DPQV 206
|
Length = 648 |
| >gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Score = 47.3 bits (112), Expect = 6e-05
Identities = 27/80 (33%), Positives = 47/80 (58%), Gaps = 3/80 (3%)
Query: 721 EVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMD 780
EV ++K+ I + + L ++LVG S LS Q++R++IA ++ NP I+ +D
Sbjct: 548 EVVDVSKKVLIHDFVS--ALPDKYETLVG-SNASKLSGGQKQRISIARAIIRNPKILILD 604
Query: 781 EPTSGLDARAAAIVMRTVRN 800
E TS LD ++ +V +T+ N
Sbjct: 605 EATSSLDNKSEYLVQKTINN 624
|
Length = 1466 |
| >gnl|CDD|182993 PRK11144, modC, molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 46.4 bits (111), Expect = 6e-05
Identities = 44/153 (28%), Positives = 70/153 (45%), Gaps = 29/153 (18%)
Query: 645 TALMGVSGAGKTTLMDVLAG--RKTGGYITGN--------ITISGYPKKQETFARISGYC 694
TA+ G SGAGKT+L++ ++G R G I N I P+K+ RI GY
Sbjct: 27 TAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEKR----RI-GYV 81
Query: 695 EQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVS 754
Q+ P + +L + + F D+++ L+ + PL L P
Sbjct: 82 FQDARLFPHYKVRGNLRYG--------MAKSMVAQF-DKIVALLGIEPL---LDRYP--G 127
Query: 755 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 787
LS +++R+ I L+ P ++ MDEP + LD
Sbjct: 128 SLSGGEKQRVAIGRALLTAPELLLMDEPLASLD 160
|
Length = 352 |
| >gnl|CDD|183231 PRK11614, livF, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 45.6 bits (108), Expect = 6e-05
Identities = 49/189 (25%), Positives = 86/189 (45%), Gaps = 19/189 (10%)
Query: 628 KLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GNITISGYPKKQ 684
K+ L+ VS G + L+G +GAGKTTL+ L G R T G I I+ + +
Sbjct: 17 KIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAK 76
Query: 685 ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELV-ELNPL 743
++ E + S +T+ E+L + + + + I V EL L+
Sbjct: 77 IMREAVAIVPEGRRVFSR-MTVEENLAMGGFF-----AERDQFQERIKWVYELFPRLHER 130
Query: 744 RQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD 803
R G +S +++ L I L++ P ++ +DEP+ GL A I+++ + +T++
Sbjct: 131 RIQRAGT-----MSGGEQQMLAIGRALMSQPRLLLLDEPSLGL----APIIIQQIFDTIE 181
Query: 804 TGRTVVCTI 812
R TI
Sbjct: 182 QLREQGMTI 190
|
Length = 237 |
| >gnl|CDD|213194 cd03227, ABC_Class2, ATP-binding cassette domain of non-transporter proteins | Back alignment and domain information |
|---|
Score = 44.3 bits (105), Expect = 7e-05
Identities = 18/83 (21%), Positives = 35/83 (42%), Gaps = 6/83 (7%)
Query: 753 VSGLSTEQRKRLTIAVEL----VANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTV 808
LS +++ +A+ L + + +DE GLD R + + + G V
Sbjct: 75 RLQLSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQALAEAILEHLVKGAQV 134
Query: 809 VCTIHQPSIDIFEAFDELFLMKR 831
+ H P ++ E D+L +K+
Sbjct: 135 IVITHLP--ELAELADKLIHIKK 155
|
ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterized by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins. Length = 162 |
| >gnl|CDD|172762 PRK14274, PRK14274, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 45.7 bits (108), Expect = 8e-05
Identities = 42/174 (24%), Positives = 77/174 (44%), Gaps = 32/174 (18%)
Query: 632 LNGVSGAFRPGVLTALMGVSGAGKTTL---MDVLAGRKTGGYITGNITISGYP--KKQET 686
L ++ + +TA++G SG GK+T ++++ +TG + +G K +
Sbjct: 28 LKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVD 87
Query: 687 FARIS---GYCEQNDIHSPF-VTIYESLLFSAWLRLSPEVDSETRKMFIDEVME--LVEL 740
+ G Q +PF +I++++ + P + K + E++E L ++
Sbjct: 88 LVELRKNIGMVFQKG--NPFPQSIFDNVAYG------PRIHGTKNKKKLQEIVEKSLKDV 139
Query: 741 -------NPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 787
+ L + L G Q++RL IA L NP ++ MDEPTS LD
Sbjct: 140 ALWDEVKDRLHTQALSLSG------GQQQRLCIARALATNPDVLLMDEPTSALD 187
|
Length = 259 |
| >gnl|CDD|172757 PRK14269, PRK14269, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 45.4 bits (107), Expect = 8e-05
Identities = 43/168 (25%), Positives = 79/168 (47%), Gaps = 23/168 (13%)
Query: 644 LTALMGVSGAGKTTLMDVLAGRKTG-GYITGNITISGYPKKQETFA----RISGYCEQND 698
+TAL+G SG GK+T + I G + I G K + + +Q +
Sbjct: 30 ITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRKNVGMVFQQPN 89
Query: 699 IHSPFV-TIYESLLFSAWLR-LSPEVDSETRKMFIDEVMELVEL-----NPLRQSLVGLP 751
+ FV +IYE++ ++ L + D E + + + ++ V L + L+Q+ + L
Sbjct: 90 V---FVKSIYENISYAPKLHGMIKNKDEE--EALVVDCLQKVGLFEEVKDKLKQNALALS 144
Query: 752 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 799
G Q++RL IA L P ++ +DEPTS LD ++ ++ ++
Sbjct: 145 G------GQQQRLCIARALAIKPKLLLLDEPTSALDPISSGVIEELLK 186
|
Length = 246 |
| >gnl|CDD|182331 PRK10247, PRK10247, putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Score = 45.1 bits (107), Expect = 9e-05
Identities = 41/166 (24%), Positives = 79/166 (47%), Gaps = 25/166 (15%)
Query: 630 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG---RKTGGYITGNITISGYPKKQET 686
+LN +S + R G + G SG GK+TL+ ++A +G + IS E
Sbjct: 21 KILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKP--EI 78
Query: 687 FARISGYCEQNDIHSPFV---TIYESLLFSAWLR-LSPEVDSETRKMFIDEVMEL-VELN 741
+ + YC Q +P + T+Y++L+F +R P+ +F+D++ +
Sbjct: 79 YRQQVSYCAQ----TPTLFGDTVYDNLIFPWQIRNQQPD-----PAIFLDDLERFALPDT 129
Query: 742 PLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 787
L ++ ++ LS +++R+++ L P ++ +DE TS LD
Sbjct: 130 ILTKN------IAELSGGEKQRISLIRNLQFMPKVLLLDEITSALD 169
|
Length = 225 |
| >gnl|CDD|237651 PRK14266, PRK14266, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 45.3 bits (107), Expect = 9e-05
Identities = 45/165 (27%), Positives = 77/165 (46%), Gaps = 38/165 (23%)
Query: 644 LTALMGVSGAGKTTLM-------DVLAGRKTGGYIT--------GNITISGYPKKQETFA 688
+TAL+G SG GK+T + D++ G + G+I + + KK
Sbjct: 31 VTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVDVVELRKK----- 85
Query: 689 RISGYCEQNDIHSPF-VTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVEL-----NP 742
G Q +PF +I++++ + LR+ E D + + ++E ++ L +
Sbjct: 86 --VGMVFQKP--NPFPKSIFDNVAYG--LRIHGEDDEDFIEERVEESLKAAALWDEVKDK 139
Query: 743 LRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 787
L +S +GL G Q++RL IA + +P +I MDEP S LD
Sbjct: 140 LDKSALGLSG------GQQQRLCIARTIAVSPEVILMDEPCSALD 178
|
Length = 250 |
| >gnl|CDD|213212 cd03245, ABCC_bacteriocin_exporters, ATP-binding cassette domain of bacteriocin exporters, subfamily C | Back alignment and domain information |
|---|
Score = 44.1 bits (105), Expect = 1e-04
Identities = 31/100 (31%), Positives = 50/100 (50%), Gaps = 15/100 (15%)
Query: 61 DTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHI 120
D +G E RG+SGGQ++ V ++ L +DE ++ +D ++ ++ LRQ +
Sbjct: 131 DLQIG-ERGRGLSGGQRQAVALARALLNDPPILLLDEPTSAMDMNSEERLKERLRQ--LL 187
Query: 121 NSGTAVI-----SLLQPAPETYDLFDDIILLSDGQIVYQG 155
T +I SLL DL D II++ G+IV G
Sbjct: 188 GDKTLIIITHRPSLL-------DLVDRIIVMDSGRIVADG 220
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. Length = 220 |
| >gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Score = 45.8 bits (108), Expect = 1e-04
Identities = 33/112 (29%), Positives = 58/112 (51%), Gaps = 4/112 (3%)
Query: 704 VTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKR 763
++IYE++ F +V + IDE +E L + VG G S LS Q++R
Sbjct: 1310 MSIYENIKFGKEDATREDVKRACKFAAIDEFIE--SLPNKYDTNVGPYGKS-LSGGQKQR 1366
Query: 764 LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTG-RTVVCTIHQ 814
+ IA L+ P I+ +DE TS LD+ + ++ +T+ + D +T++ H+
Sbjct: 1367 IAIARALLREPKILLLDEATSSLDSNSEKLIEKTIVDIKDKADKTIITIAHR 1418
|
Length = 1466 |
| >gnl|CDD|184588 PRK14243, PRK14243, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 45.2 bits (107), Expect = 1e-04
Identities = 49/160 (30%), Positives = 77/160 (48%), Gaps = 30/160 (18%)
Query: 644 LTALMGVSGAGKTTLM-------DVLAGRKTGGYIT--GNITISGYPKKQETFARISGYC 694
+TA +G SG GK+T++ D++ G + G +T G + E RI G
Sbjct: 38 ITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDPVEVRRRI-GMV 96
Query: 695 EQNDIHSPF-VTIYESLLFSAWLR-----LSPEVDSETRKMFI-DEVMELVELNPLRQSL 747
Q +PF +IY+++ + A + + V+ R+ + DEV + L+QS
Sbjct: 97 FQKP--NPFPKSIYDNIAYGARINGYKGDMDELVERSLRQAALWDEVKD-----KLKQS- 148
Query: 748 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 787
G+S LS Q++RL IA + P +I MDEP S LD
Sbjct: 149 ----GLS-LSGGQQQRLCIARAIAVQPEVILMDEPCSALD 183
|
Length = 264 |
| >gnl|CDD|184207 PRK13648, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 45.1 bits (107), Expect = 1e-04
Identities = 28/80 (35%), Positives = 42/80 (52%), Gaps = 7/80 (8%)
Query: 756 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT-VDTGRTVVCTIHQ 814
LS Q++R+ IA L NPS+I +DE TS LD A ++ VR + T++ H
Sbjct: 143 LSGGQKQRVAIAGVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITH- 201
Query: 815 PSIDIFEAF--DELFLMKRG 832
D+ EA D + +M +G
Sbjct: 202 ---DLSEAMEADHVIVMNKG 218
|
Length = 269 |
| >gnl|CDD|236898 PRK11308, dppF, dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 45.7 bits (109), Expect = 1e-04
Identities = 44/180 (24%), Positives = 66/180 (36%), Gaps = 48/180 (26%)
Query: 632 LNGVSGAFRPGVLTALMGVSGAGKTTL--MDVLAGRKTGG--YITGNITISGYPKKQETF 687
L+GVS G A++G SG GK+TL + + TGG Y G + + +
Sbjct: 31 LDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQG-QDLLKADPEAQKL 89
Query: 688 ARISGYCEQNDIHSPFVTIYESL--------LFSAWLRLSPEVDSETRKMFIDEVMELVE 739
R I F Y SL + L ++ + + R+ +M V
Sbjct: 90 LR-------QKIQIVFQNPYGSLNPRKKVGQILEEPLLINTSLSAAERREKALAMMAKV- 141
Query: 740 LNPLRQSLVGLPGVSGLSTE------------QRKRLTIAVELVANPSIIFMDEPTSGLD 787
GL E QR+R+ IA L+ +P ++ DEP S LD
Sbjct: 142 ---------------GLRPEHYDRYPHMFSGGQRQRIAIARALMLDPDVVVADEPVSALD 186
|
Length = 327 |
| >gnl|CDD|184208 PRK13649, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 45.1 bits (107), Expect = 1e-04
Identities = 54/214 (25%), Positives = 90/214 (42%), Gaps = 28/214 (13%)
Query: 632 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKT---GGYITGNITISGYPKKQE--T 686
L V+ G TA +G +G+GK+T+M +L G G + I+ K ++
Sbjct: 23 LFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIKQ 82
Query: 687 FARISGYCEQNDIHSPFV-TIYESLLFSAW-LRLSPEVDSETRK------MFIDEVMELV 738
+ G Q F T+ + + F +S E ++E + I E L
Sbjct: 83 IRKKVGLVFQFPESQLFEETVLKDVAFGPQNFGVSQE-EAEALAREKLALVGISE--SLF 139
Query: 739 ELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV 798
E NP LS Q +R+ IA L P I+ +DEPT+GLD + +M
Sbjct: 140 EKNPFE-----------LSGGQMRRVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLF 188
Query: 799 RNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 832
+ +G T+V H D+ D ++++++G
Sbjct: 189 KKLHQSGMTIVLVTHLMD-DVANYADFVYVLEKG 221
|
Length = 280 |
| >gnl|CDD|184594 PRK14264, PRK14264, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 45.2 bits (107), Expect = 1e-04
Identities = 52/190 (27%), Positives = 77/190 (40%), Gaps = 42/190 (22%)
Query: 632 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLA---GRKTGGYITGNITISGYPKKQE--- 685
L GVS +TAL+G SG GK+T + L R I G++ + G Q+
Sbjct: 61 LKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVN 120
Query: 686 --TFARISGYCEQNDIHSPF-VTIYESLLFSA----------WLRLSPEVDSETRKMFI- 731
+ G Q+ +PF +I E++ + RL D + +
Sbjct: 121 LVELRKRVGMVFQSP--NPFPKSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVE 178
Query: 732 ---------DEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEP 782
DEV + ++ N L GLS Q++RL IA L +P +I MDEP
Sbjct: 179 RSLRQAALWDEVNDRLDDNAL-----------GLSGGQQQRLCIARCLAVDPEVILMDEP 227
Query: 783 TSGLDARAAA 792
S LD A +
Sbjct: 228 ASALDPIATS 237
|
Length = 305 |
| >gnl|CDD|237455 PRK13637, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 45.0 bits (107), Expect = 1e-04
Identities = 45/166 (27%), Positives = 71/166 (42%), Gaps = 16/166 (9%)
Query: 632 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG---RKTGGYITGNITISGYPKKQETFA 688
L+ V+ G L+G +G+GK+TL+ L G +G I + I+ K
Sbjct: 23 LDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDIR 82
Query: 689 RISGYCEQNDIHSPFV-TIYESLLFSAW-LRLSPEVDSETRKMFIDEVMELVELNPLRQS 746
+ G Q + F TI + + F L LS + E + + M +V L
Sbjct: 83 KKVGLVFQYPEYQLFEETIEKDIAFGPINLGLS---EEEI-ENRVKRAMNIVGL-----D 133
Query: 747 LVGLPGVS--GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARA 790
S LS Q++R+ IA + P I+ +DEPT+GLD +
Sbjct: 134 YEDYKDKSPFELSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPKG 179
|
Length = 287 |
| >gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Score = 45.4 bits (108), Expect = 1e-04
Identities = 42/162 (25%), Positives = 72/162 (44%), Gaps = 20/162 (12%)
Query: 630 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFAR 689
+L G+ G + AL+G +GAGK+TLM ++AG +G + I G P + T A+
Sbjct: 25 EVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPD--SGTLEIGGNPCARLTPAK 82
Query: 690 ISGY----CEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMEL-VELNPLR 744
Q + P +++ E++LF L S +KM + L +L+
Sbjct: 83 AHQLGIYLVPQEPLLFPNLSVKENILF----GLPKRQASM-QKM-KQLLAALGCQLDLDS 136
Query: 745 QSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 786
+ L R+ + I L+ + I+ +DEPT+ L
Sbjct: 137 SA-------GSLEVADRQIVEILRGLMRDSRILILDEPTASL 171
|
Length = 510 |
| >gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding protein-dependent transport systems | Back alignment and domain information |
|---|
Score = 43.3 bits (103), Expect = 2e-04
Identities = 24/88 (27%), Positives = 45/88 (51%), Gaps = 3/88 (3%)
Query: 64 VGDEMIRGISGGQKKRVTTGE-MMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINS 122
V + + G+SGGQ++RV + + P + L +DE ++ LD T ++ L+ +
Sbjct: 93 VLENIALGLSGGQQQRVALARALAMDPDV-LLLDEPTSALDPITRREVRALLKS-LQAQL 150
Query: 123 GTAVISLLQPAPETYDLFDDIILLSDGQ 150
G V+ + E L D +++L DG+
Sbjct: 151 GITVVLVTHDLDEAARLADRVVVLRDGK 178
|
This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 178 |
| >gnl|CDD|226164 COG3638, COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 44.2 bits (105), Expect = 2e-04
Identities = 28/90 (31%), Positives = 41/90 (45%), Gaps = 9/90 (10%)
Query: 73 SGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQP 132
SGGQ++RV +V + DE LD + ++++ L+ I+ G VI L
Sbjct: 149 SGGQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKD-INQEDGITVIVNLH- 206
Query: 133 APETYDL----FDDIILLSDGQIVYQGPRE 158
DL D II L G+IV+ GP
Sbjct: 207 ---QVDLAKKYADRIIGLKAGRIVFDGPAS 233
|
Length = 258 |
| >gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 44.8 bits (106), Expect = 2e-04
Identities = 45/190 (23%), Positives = 74/190 (38%), Gaps = 19/190 (10%)
Query: 633 NGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG---RKTGGYITGNITI---SGYPKKQET 686
+S + G + G+ G+G+T LM+ L G R G I S ++
Sbjct: 280 RDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPRSPLDAVKKG 339
Query: 687 FARISGYCEQNDIHSPF-----VTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVEL- 740
A I+ N F + I SL + + + EL+ L
Sbjct: 340 MAYITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALK 399
Query: 741 -NPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 799
+ + Q++ L G Q+K L I+ L P +I DEPT G+D A A + + +R
Sbjct: 400 CHSVNQNITELSG-----GNQQKVL-ISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMR 453
Query: 800 NTVDTGRTVV 809
D G+ ++
Sbjct: 454 QLADDGKVIL 463
|
Length = 510 |
| >gnl|CDD|213187 cd03220, ABC_KpsT_Wzt, ATP-binding cassette component of polysaccharide transport system | Back alignment and domain information |
|---|
Score = 44.1 bits (105), Expect = 2e-04
Identities = 58/206 (28%), Positives = 89/206 (43%), Gaps = 30/206 (14%)
Query: 632 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYI----TGNITISGYPKKQETF 687
L VS G L+G +GAGK+TL+ +LAG I +G +T+ G
Sbjct: 38 LKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAG------IYPPDSGTVTVRG-------- 83
Query: 688 ARISGYCEQNDIHSPFVTIYESLLFSA-WLRLSPEVDSETRKMFIDEVMELVELNPLRQS 746
R+S +P +T E++ + L LS + E IDE++E EL
Sbjct: 84 -RVSSLLGLGGGFNPELTGRENIYLNGRLLGLSRKEIDE----KIDEIIEFSELGDFID- 137
Query: 747 LVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGR 806
LP V S+ + RL A+ P I+ +DE + DA R +R + G+
Sbjct: 138 ---LP-VKTYSSGMKARLAFAIATALEPDILLIDEVLAVGDAAFQEKCQRRLRELLKQGK 193
Query: 807 TVVCTIHQPSIDIFEAFDELFLMKRG 832
TV+ H PS I D ++++G
Sbjct: 194 TVILVSHDPSS-IKRLCDRALVLEKG 218
|
The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenza) and a cytoplasmic membrane protein MPA2. Length = 224 |
| >gnl|CDD|185067 PRK15112, PRK15112, antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Score = 44.0 bits (104), Expect = 2e-04
Identities = 46/161 (28%), Positives = 72/161 (44%), Gaps = 19/161 (11%)
Query: 635 VSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYC 694
+S R G A++G +G+GK+TL +LAG +G + I +P + Y
Sbjct: 32 LSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPT--SGELLIDDHPLHFGDY----SYR 85
Query: 695 EQNDIHSPFVTIYESL--------LFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQS 746
Q I F SL + LRL+ +++ E R+ I E + V L P S
Sbjct: 86 SQR-IRMIFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLPDHAS 144
Query: 747 LVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 787
P + L+ Q++RL +A L+ P +I DE + LD
Sbjct: 145 Y--YPHM--LAPGQKQRLGLARALILRPKVIIADEALASLD 181
|
Length = 267 |
| >gnl|CDD|213216 cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins | Back alignment and domain information |
|---|
Score = 43.3 bits (103), Expect = 3e-04
Identities = 34/108 (31%), Positives = 54/108 (50%), Gaps = 20/108 (18%)
Query: 61 DTMVGDEMIRG--ISGGQKKRVTTGEMMV-GPALALFMDEISTGLDSSTTFQIVNCLRQN 117
DT+VG+ RG +SGGQK+R+ ++ P + L +DE ++ LD+ + + L
Sbjct: 130 DTLVGE---RGSQLSGGQKQRIAIARALLRNPKI-LLLDEATSALDAESEKLVQEAL-DR 184
Query: 118 IHINSGTAVI----SLLQPAPETYDLFDDIILLSDGQIVYQG-PRELV 160
T VI S ++ A D I +L +GQ+V QG EL+
Sbjct: 185 AMKGRTTIVIAHRLSTIRNA-------DLIAVLQNGQVVEQGTHDELM 225
|
MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. Length = 238 |
| >gnl|CDD|132027 TIGR02982, heterocyst_DevA, ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Score = 43.1 bits (102), Expect = 3e-04
Identities = 22/84 (26%), Positives = 42/84 (50%), Gaps = 4/84 (4%)
Query: 70 RGISGGQKKRVTTGEMMVG-PALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVIS 128
+SGGQK+RV +V P L + DE + LDS + +V +++ G ++
Sbjct: 140 HNLSGGQKQRVAIARALVHRPKL-VLADEPTAALDSKSGRDVVELMQKLAR-EQGCTIL- 196
Query: 129 LLQPAPETYDLFDDIILLSDGQIV 152
++ D+ D I+ + DG+++
Sbjct: 197 IVTHDNRILDVADRIVHMEDGKLL 220
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. Length = 220 |
| >gnl|CDD|184204 PRK13645, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 43.8 bits (103), Expect = 3e-04
Identities = 51/209 (24%), Positives = 92/209 (44%), Gaps = 16/209 (7%)
Query: 632 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG---RKTGGYITGNITISGYPKKQETFA 688
LN S F+ +T ++G +G+GK+T++ + G +TG I G+ I KK +
Sbjct: 27 LNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIKEVK 86
Query: 689 RIS---GYCEQNDIHSPFV-TIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLR 744
R+ G Q + F TI + + F P E ++ +V EL++L L
Sbjct: 87 RLRKEIGLVFQFPEYQLFQETIEKDIAFG------PVNLGENKQEAYKKVPELLKLVQLP 140
Query: 745 QSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT-VRNTVD 803
+ V LS Q++R+ +A + + + + +DEPT GLD + + R +
Sbjct: 141 EDYVKRSPFE-LSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKE 199
Query: 804 TGRTVVCTIHQPSIDIFEAFDELFLMKRG 832
+ ++ H + DE+ +M G
Sbjct: 200 YKKRIIMVTHNMD-QVLRIADEVIVMHEG 227
|
Length = 289 |
| >gnl|CDD|213190 cd03223, ABCD_peroxisomal_ALDP, ATP-binding cassette domain of peroxisomal transporter, subfamily D | Back alignment and domain information |
|---|
Score = 42.5 bits (101), Expect = 3e-04
Identities = 25/78 (32%), Positives = 42/78 (53%), Gaps = 4/78 (5%)
Query: 743 LRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV 802
LR+ L+ P LS +++RL A L+ P +F+DE TS LD + + + ++
Sbjct: 80 LREQLI-YPWDDVLSGGEQQRLAFARLLLHKPKFVFLDEATSALDEESEDRLYQLLK--- 135
Query: 803 DTGRTVVCTIHQPSIDIF 820
+ G TV+ H+PS+ F
Sbjct: 136 ELGITVISVGHRPSLWKF 153
|
Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asymptomatic). Length = 166 |
| >gnl|CDD|237649 PRK14254, PRK14254, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.6 bits (103), Expect = 3e-04
Identities = 21/58 (36%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Query: 756 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIH 813
LS Q++RL IA + +P +I MDEP S LD A + + + + TVV H
Sbjct: 181 LSGGQQQRLCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAEE-YTVVIVTH 237
|
Length = 285 |
| >gnl|CDD|237648 PRK14250, PRK14250, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.3 bits (102), Expect = 3e-04
Identities = 45/178 (25%), Positives = 78/178 (43%), Gaps = 25/178 (14%)
Query: 630 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ----E 685
+L +S F G + ++G SGAGK+TL+ ++ + G+I I G K +
Sbjct: 17 EILKDISVKFEGGAIYTIVGPSGAGKSTLIKLI--NRLIDPTEGSILIDGVDIKTIDVID 74
Query: 686 TFARISGYCEQNDIHSPFV---TIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP 742
+I +Q P + T+ +++ + L+ VD E + +V LN
Sbjct: 75 LRRKIGMVFQQ-----PHLFEGTVKDNIEYGPMLKGEKNVDVEY-------YLSIVGLN- 121
Query: 743 LRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN 800
V LS + +R++IA L NP ++ +DEPTS LD + I+ +
Sbjct: 122 ---KEYATRDVKNLSGGEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEIIEELIVK 176
|
Length = 241 |
| >gnl|CDD|225183 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 44.1 bits (105), Expect = 4e-04
Identities = 35/102 (34%), Positives = 50/102 (49%), Gaps = 5/102 (4%)
Query: 61 DTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHI 120
DT VG E +SGGQ++R+ ++ L +DE ++ LD T I+ L Q I
Sbjct: 600 DTPVG-EGGANLSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQNLLQ---I 655
Query: 121 NSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLE 162
G VI ++ T D II+L G+IV QG E +L
Sbjct: 656 LQGRTVI-IIAHRLSTIRSADRIIVLDQGKIVEQGSHEELLA 696
|
Length = 709 |
| >gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Score = 44.3 bits (105), Expect = 4e-04
Identities = 34/101 (33%), Positives = 55/101 (54%), Gaps = 12/101 (11%)
Query: 72 ISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTA--VISL 129
ISGGQK+R+ ++ + L +DE ++ LD+ T +IVN L +++ T V
Sbjct: 612 ISGGQKQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNL---LNLQDKTIIFVAHR 668
Query: 130 LQPAPETYDLFDDIILLSDGQIVYQGP-RELVLE--FFASM 167
L A ++ D II+L G+I+ QG EL+ F+AS+
Sbjct: 669 LSVAKQS----DKIIVLDHGKIIEQGSHDELLDRNGFYASL 705
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair, Transport and binding proteins, Other]. Length = 708 |
| >gnl|CDD|184202 PRK13642, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 43.5 bits (102), Expect = 4e-04
Identities = 51/205 (24%), Positives = 86/205 (41%), Gaps = 15/205 (7%)
Query: 632 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQET---FA 688
LNGVS + G +++G +G+GK+T ++ G G + I G E
Sbjct: 23 LNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFE--EFEGKVKIDGELLTAENVWNLR 80
Query: 689 RISGYCEQN-DIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSL 747
R G QN D T+ + + F + P + R +DE + V + +
Sbjct: 81 RKIGMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKR---VDEALLAVNMLDFKTR- 136
Query: 748 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT 807
+ LS Q++R+ +A + P II +DE TS LD +MR + + +
Sbjct: 137 ----EPARLSGGQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQL 192
Query: 808 VVCTIHQPSIDIFEAFDELFLMKRG 832
V +I +D + D + +MK G
Sbjct: 193 TVLSITH-DLDEAASSDRILVMKAG 216
|
Length = 277 |
| >gnl|CDD|172740 PRK14252, PRK14252, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.1 bits (101), Expect = 4e-04
Identities = 51/169 (30%), Positives = 78/169 (46%), Gaps = 34/169 (20%)
Query: 644 LTALMGVSGAGKTTLM-------DVLAGRKTGGYI-----TGNITISGYPKKQETFARIS 691
+TAL+G SG GK+T + D+ G G I NI +S E RIS
Sbjct: 44 VTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNI-LSPEVDPIEVRMRIS 102
Query: 692 GYCEQNDIHSPF-VTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLV-- 748
++ + PF +I+E++ + +R R+ ++E +E N LR + +
Sbjct: 103 MVFQKPN---PFPKSIFENVAYGLRIR------GVKRRSILEERVE----NALRNAALWD 149
Query: 749 ----GLPGVS-GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 792
L ++ LS Q++RL IA L +P I+ DEPTS LD A A
Sbjct: 150 EVKDRLGDLAFNLSGGQQQRLCIARALATDPEILLFDEPTSALDPIATA 198
|
Length = 265 |
| >gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins | Back alignment and domain information |
|---|
Score = 42.0 bits (100), Expect = 5e-04
Identities = 36/116 (31%), Positives = 59/116 (50%), Gaps = 28/116 (24%)
Query: 51 LKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALA-----LFMDEISTGLDSS 105
L++LGL AD + +SGG+++RV ++ ALA L +DE ++ LD +
Sbjct: 82 LELLGLAHLADRPFNE-----LSGGERQRV-----LLARALAQEPPILLLDEPTSHLDIA 131
Query: 106 TTFQIVNCLRQNIHINSGTAVISLLQPAPETYDL------FDDIILLSDGQIVYQG 155
+++ LR+ + G V+ +L +DL D +ILL DG+IV QG
Sbjct: 132 HQIELLELLRR-LARERGKTVVMVL------HDLNLAARYADRVILLKDGRIVAQG 180
|
ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. Length = 180 |
| >gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Score = 43.9 bits (104), Expect = 5e-04
Identities = 35/138 (25%), Positives = 65/138 (47%), Gaps = 21/138 (15%)
Query: 45 VITDYYLK--VLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGL 102
+ Y + V L + DT +G+ + +SGGQ++R+ ++ A L +DE ++ L
Sbjct: 442 ALAAAYAQDFVDKLPLGLDTPIGENGVL-LSGGQRQRLAIARALLKDAPILILDEATSAL 500
Query: 103 DSSTTFQIVNCLRQNIHINSGTAVI----SLLQPAPETYDLFDDIILLSDGQIVYQGPRE 158
D+ + + L + + T VI S ++ A D I+++ DG+IV +G
Sbjct: 501 DNESERLVQAAL-ERLMQGRTTLVIAHRLSTIEKA-------DRIVVMDDGRIVERGTHN 552
Query: 159 LVLE---FFA---SMGFR 170
+L +A +M FR
Sbjct: 553 ELLARNGLYAQLHNMQFR 570
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]. Length = 571 |
| >gnl|CDD|183016 PRK11176, PRK11176, lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Score = 43.9 bits (104), Expect = 5e-04
Identities = 55/209 (26%), Positives = 95/209 (45%), Gaps = 21/209 (10%)
Query: 632 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGY--ITGNITISGYPKKQETFAR 689
L ++ G AL+G SG+GK+T+ ++L T Y G I + G+ + T A
Sbjct: 359 LRNINFKIPAGKTVALVGRSGSGKSTIANLL----TRFYDIDEGEILLDGHDLRDYTLAS 414
Query: 690 ISGYC---EQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQS 746
+ QN +H TI ++ ++ + S E E +M M+ + +
Sbjct: 415 LRNQVALVSQN-VHLFNDTIANNIAYARTEQYSREQIEEAARM--AYAMDFIN--KMDNG 469
Query: 747 L---VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD 803
L +G GV LS QR+R+ IA L+ + I+ +DE TS LD + + + + +
Sbjct: 470 LDTVIGENGVL-LSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAAL-DELQ 527
Query: 804 TGRTVVCTIHQPSIDIFEAFDELFLMKRG 832
RT + H+ S E DE+ +++ G
Sbjct: 528 KNRTSLVIAHRLS--TIEKADEILVVEDG 554
|
Length = 582 |
| >gnl|CDD|224044 COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 42.7 bits (101), Expect = 6e-04
Identities = 32/107 (29%), Positives = 51/107 (47%), Gaps = 7/107 (6%)
Query: 50 YLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVG-PALALFMDEISTGLDSSTTF 108
L++LG AD G +S G+++RV +V P L L +DE + GLD
Sbjct: 155 LLELLGAKHLADRPFGS-----LSQGEQRRVLIARALVKDPEL-LILDEPAQGLDLIARE 208
Query: 109 QIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQG 155
Q++N L + A++ + A E F +LL +G++V QG
Sbjct: 209 QLLNRLEELAASPGAPALLFVTHHAEEIPPCFTHRLLLKEGEVVAQG 255
|
Length = 257 |
| >gnl|CDD|237451 PRK13631, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 42.9 bits (101), Expect = 7e-04
Identities = 45/194 (23%), Positives = 85/194 (43%), Gaps = 28/194 (14%)
Query: 35 AIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVT-TGEMMVGPALAL 93
A+ + EA + +YL +GLD D+ + + G+SGGQK+RV G + + P + +
Sbjct: 144 ALGVKKSEAKKLAKFYLNKMGLD---DSYL-ERSPFGLSGGQKRRVAIAGILAIQPEILI 199
Query: 94 FMDEISTGLD---SSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQ 150
F DE + GLD Q++ + N V + ++ D++I++ G+
Sbjct: 200 F-DEPTAGLDPKGEHEMMQLILDAKAN-----NKTVFVITHTMEHVLEVADEVIVMDKGK 253
Query: 151 IVYQG-PRELVL--EFFASMGFRCPKRKGVADFLQEVTSRKDQRQYWAHKEKPYRFV--T 205
I+ G P E+ S + P+ V + ++ + +K Y+ T
Sbjct: 254 ILKTGTPYEIFTDQHIINSTSIQVPR---VIQVINDLIKKD------PKYKKLYQKQPRT 304
Query: 206 VQEFAEAFQSFHVG 219
+++ A+A F G
Sbjct: 305 IEQLADAINEFIKG 318
|
Length = 320 |
| >gnl|CDD|213204 cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-binding cassette domain 2 of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 42.4 bits (100), Expect = 7e-04
Identities = 36/166 (21%), Positives = 63/166 (37%), Gaps = 29/166 (17%)
Query: 637 GAFRPGVLTALMGVSGAGKTTLMDVLAGR---KTGGYITGNITISGYPKKQETFARISGY 693
G+ + ++G +G GKTT + +LAG G T+S P+
Sbjct: 20 GSISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDTVSYKPQY---------- 69
Query: 694 CEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGV 753
I + + LL S D T F E+ + +++ + V
Sbjct: 70 -----IKADYEGTVRDLLSSI------TKDFYTHPYFKTEIAKPLQIEQILDREV----- 113
Query: 754 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 799
LS + +R+ IA L + I +DEP++ LD + + +R
Sbjct: 114 PELSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMASKVIR 159
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 246 |
| >gnl|CDD|130260 TIGR01192, chvA, glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Score = 43.3 bits (102), Expect = 7e-04
Identities = 53/196 (27%), Positives = 84/196 (42%), Gaps = 32/196 (16%)
Query: 635 VSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYC 694
VS + G A++G +GAGKTTL+++L ++ G I I G T
Sbjct: 354 VSFEAKAGQTVAIVGPTGAGKTTLINLL--QRVYDPTVGQILIDGIDINTVT-------- 403
Query: 695 EQNDIHSPFVTIYESL-LFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQ-------- 745
+ + T+++ LF+ +R + + E +EV E +
Sbjct: 404 -RESLRKSIATVFQDAGLFNRSIRENIRLGREGATD--EEVYEAAKAAAAHDFILKRSNG 460
Query: 746 --SLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD 803
+LVG G + LS +R+RL IA ++ N I+ +DE TS LD A V+N +D
Sbjct: 461 YDTLVGERG-NRLSGGERQRLAIARAILKNAPILVLDEATSALDVETEA----RVKNAID 515
Query: 804 T---GRTVVCTIHQPS 816
RT H+ S
Sbjct: 516 ALRKNRTTFIIAHRLS 531
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 585 |
| >gnl|CDD|224052 COG1127, Ttg2A, ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 42.6 bits (101), Expect = 8e-04
Identities = 32/120 (26%), Positives = 50/120 (41%), Gaps = 31/120 (25%)
Query: 64 VGDEMIRGISGGQKKRVTTGEMMVGPALA---------LFMDEISTGLDSSTTFQIVNCL 114
D +SGG +KRV ALA LF+DE ++GLD + I +
Sbjct: 138 AADLYPSELSGGMRKRV---------ALARAIALDPELLFLDEPTSGLDPISAGVIDELI 188
Query: 115 RQNIHINS--GTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRE--------LVLEFF 164
R +N G VI + + D + +L+DG+++ +G E V +FF
Sbjct: 189 R---ELNDALGLTVIMVTHDLDSLLTIADRVAVLADGKVIAEGTPEELLASDDPWVRQFF 245
|
Length = 263 |
| >gnl|CDD|224058 COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 42.6 bits (101), Expect = 8e-04
Identities = 37/123 (30%), Positives = 56/123 (45%), Gaps = 25/123 (20%)
Query: 72 ISGGQKKRVTTGEMMVGPALA-----LFMDEISTGLDSSTTFQIVNCLRQNIHINS--GT 124
+SGGQK+RV + ALA L DE ++ LD TT I+ L+ IN G
Sbjct: 142 LSGGQKQRVA-----IARALANNPKILLCDEATSALDPETTQSILELLKD---INRELGL 193
Query: 125 AVISLLQPAPE-TYDLFDDIILLSDGQIVYQGPRELVLEFFASMGFRCPKRKGVADFLQE 183
++ L+ E + D + +L G++V +G V E FA+ PK +F+ E
Sbjct: 194 TIV-LITHEMEVVKRICDRVAVLDQGRLVEEGT---VSEVFAN-----PKHAITQEFIGE 244
Query: 184 VTS 186
Sbjct: 245 TLE 247
|
Length = 339 |
| >gnl|CDD|184210 PRK13651, PRK13651, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 42.8 bits (101), Expect = 8e-04
Identities = 34/129 (26%), Positives = 56/129 (43%), Gaps = 28/129 (21%)
Query: 38 TEGQEANVITDYYLKVLGLDVCADTMVGDEMIR---GISGGQKKRVT-TGEMMVGPALAL 93
+EA Y++++GLD + R +SGGQK+RV G + + P L
Sbjct: 136 VSKEEAKKRAAKYIELVGLDE-------SYLQRSPFELSGGQKRRVALAGILAMEPDF-L 187
Query: 94 FMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDI-------ILL 146
DE + GLD +I+ N++ T ++ T+DL D++ I
Sbjct: 188 VFDEPTAGLDPQGVKEILEIF-DNLNKQGKTIILV-------THDL-DNVLEWTKRTIFF 238
Query: 147 SDGQIVYQG 155
DG+I+ G
Sbjct: 239 KDGKIIKDG 247
|
Length = 305 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 42.9 bits (102), Expect = 9e-04
Identities = 34/118 (28%), Positives = 50/118 (42%), Gaps = 25/118 (21%)
Query: 58 VCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALA-----LFMDEISTGLDSSTTFQIVN 112
V D +SGGQ++RV + ALA L +DE + LD S Q++N
Sbjct: 416 VGLPPEFLDRYPHELSGGQRQRVA-----IARALALEPKLLILDEPVSALDVSVQAQVLN 470
Query: 113 CLRQNIHINSGTAV--IS-----LLQPAPETYDLFDDIILLSDGQIVYQGPRELVLEF 163
L+ + G IS + A D + ++ DG+IV +GP E V E
Sbjct: 471 LLKD-LQEELGLTYLFISHDLAVVRYIA-------DRVAVMYDGRIVEEGPTEKVFEN 520
|
Length = 539 |
| >gnl|CDD|184200 PRK13640, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 42.5 bits (100), Expect = 9e-04
Identities = 56/204 (27%), Positives = 87/204 (42%), Gaps = 32/204 (15%)
Query: 632 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG-------RKTGGYITGNITISGYPKKQ 684
LN +S + G TAL+G +G+GK+T+ ++ G + IT+ G
Sbjct: 23 LNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNS------KITVDGITLTA 76
Query: 685 ETFARIS---GYCEQNDIHSPFV--TIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVE 739
+T I G QN + FV T+ + + F R P E K+ + +V+ V
Sbjct: 77 KTVWDIREKVGIVFQNP-DNQFVGATVGDDVAFGLENRAVPR--PEMIKI-VRDVLADVG 132
Query: 740 LNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 799
+ S + LS Q++R+ IA L P II +DE TS LD +++ +R
Sbjct: 133 MLDYIDS-----EPANLSGGQKQRVAIAGILAVEPKIIILDESTSMLDPAGKEQILKLIR 187
Query: 800 N-TVDTGRTVVCTIHQPSIDIFEA 822
TV+ H DI EA
Sbjct: 188 KLKKKNNLTVISITH----DIDEA 207
|
Length = 282 |
| >gnl|CDD|172745 PRK14257, PRK14257, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 42.4 bits (99), Expect = 9e-04
Identities = 43/159 (27%), Positives = 75/159 (47%), Gaps = 16/159 (10%)
Query: 644 LTALMGVSGAGKTTLM-------DVLAGRKTGG--YITGNITISGYPKKQETFARISGYC 694
+TA +G SG GK+T + D++ G G Y G T S E RI
Sbjct: 110 VTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKISSLELRTRIGMVF 169
Query: 695 EQNDIHSPF-VTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGV 753
++ +PF ++I++++ + R + D + + +++ ++ L + + G
Sbjct: 170 QKP---TPFEMSIFDNVAYGP--RNNGINDRKILEKIVEKSLKSAALWDEVKDDLDKAG- 223
Query: 754 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 792
+ LS Q++RL IA + P ++ MDEPTS LD A A
Sbjct: 224 NALSGGQQQRLCIARAIALEPEVLLMDEPTSALDPIATA 262
|
Length = 329 |
| >gnl|CDD|213202 cd03235, ABC_Metallic_Cations, ATP-binding cassette domain of the metal-type transporters | Back alignment and domain information |
|---|
Score = 41.0 bits (97), Expect = 0.001
Identities = 24/85 (28%), Positives = 38/85 (44%), Gaps = 7/85 (8%)
Query: 73 SGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISL--L 130
SGGQ++RV +V L +DE G+D T I LR+ + T ++ L
Sbjct: 134 SGGQQQRVLLARALVQDPDLLLLDEPFAGVDPKTQEDIYELLRE-LRREGMTILVVTHDL 192
Query: 131 QPAPETYDLFDDIILLSDGQIVYQG 155
+ FD ++LL + +V G
Sbjct: 193 GLVL---EYFDRVLLL-NRTVVASG 213
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. Length = 213 |
| >gnl|CDD|224046 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 41.4 bits (98), Expect = 0.001
Identities = 27/93 (29%), Positives = 43/93 (46%), Gaps = 9/93 (9%)
Query: 73 SGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISL--- 129
SGGQK+RV + L +DE TG+D + +I + L++ + G V+ +
Sbjct: 141 SGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKE-LR-QEGKTVLMVTHD 198
Query: 130 LQPAPETYDLFDDIILLSDGQIVYQGPRELVLE 162
L FD +I L + ++ GP E VL
Sbjct: 199 LGLVM---AYFDRVICL-NRHLIASGPPEEVLT 227
|
Length = 254 |
| >gnl|CDD|130256 TIGR01188, drrA, daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 42.4 bits (100), Expect = 0.001
Identities = 27/96 (28%), Positives = 44/96 (45%), Gaps = 3/96 (3%)
Query: 65 GDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGT 124
D + SGG ++R+ ++ LF+DE +TGLD T I + +R G
Sbjct: 118 ADRPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDYIRA--LKEEGV 175
Query: 125 AVISLLQPAPETYDLFDDIILLSDGQIVYQG-PREL 159
++ E L D I ++ G+I+ +G P EL
Sbjct: 176 TILLTTHYMEEADKLCDRIAIIDHGRIIAEGTPEEL 211
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc [Transport and binding proteins, Other]. Length = 302 |
| >gnl|CDD|213219 cd03252, ABCC_Hemolysin, ATP-binding cassette domain of hemolysin B, subfamily C | Back alignment and domain information |
|---|
Score = 41.3 bits (97), Expect = 0.001
Identities = 32/102 (31%), Positives = 55/102 (53%), Gaps = 7/102 (6%)
Query: 61 DTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIH- 119
DT+VG++ G+SGGQ++R+ ++ L DE ++ LD + I+ +N+H
Sbjct: 129 DTIVGEQGA-GLSGGQRQRIAIARALIHNPRILIFDEATSALDYESEHAIM----RNMHD 183
Query: 120 INSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVL 161
I +G VI ++ T D II++ G+IV QG + +L
Sbjct: 184 ICAGRTVI-IIAHRLSTVKNADRIIVMEKGRIVEQGSHDELL 224
|
The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. Length = 237 |
| >gnl|CDD|184203 PRK13643, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 42.0 bits (98), Expect = 0.001
Identities = 34/115 (29%), Positives = 54/115 (46%), Gaps = 5/115 (4%)
Query: 72 ISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQ 131
+SGGQ +RV ++ L +DE + GLD +++ L ++IH SG V+ +
Sbjct: 145 LSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQ-LFESIH-QSGQTVVLVTH 202
Query: 132 PAPETYDLFDDIILLSDGQIVYQG-PRELVLE--FFASMGFRCPKRKGVADFLQE 183
+ D D + LL G I+ G P ++ E F + PK AD LQ+
Sbjct: 203 LMDDVADYADYVYLLEKGHIISCGTPSDVFQEVDFLKAHELGVPKATHFADQLQK 257
|
Length = 288 |
| >gnl|CDD|233665 TIGR01978, sufC, FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Score = 41.9 bits (99), Expect = 0.001
Identities = 29/100 (29%), Positives = 46/100 (46%), Gaps = 17/100 (17%)
Query: 71 GISGGQKKRVTTGEMMV-GPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVIS- 128
G SGG+KKR +M + P LA+ +DEI +GLD + + + + +I+
Sbjct: 144 GFSGGEKKRNEILQMALLEPKLAI-LDEIDSGLDIDALKIVAEGINRLREPDRSFLIITH 202
Query: 129 ------LLQPAPETYDLFDDIILLSDGQIVYQGPRELVLE 162
++P D + +L DG+IV G EL E
Sbjct: 203 YQRLLNYIKP--------DYVHVLLDGRIVKSGDVELAKE 234
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PMID:12554644) or associated with the membrane (PMID:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 243 |
| >gnl|CDD|227590 COG5265, ATM1, ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 42.3 bits (100), Expect = 0.001
Identities = 39/119 (32%), Positives = 59/119 (49%), Gaps = 20/119 (16%)
Query: 61 DTMVGDEMIRG--ISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNI 118
DT VG+ RG +SGG+K+RV ++ L +DE ++ LD+ T I LR+ +
Sbjct: 390 DTGVGE---RGLKLSGGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQAALRE-V 445
Query: 119 HINSGTAVI----SLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLE---FFASMGFR 170
T VI S + A D+II+L +G+IV +G E +L +A M R
Sbjct: 446 SAGRTTLVIAHRLSTIIDA-------DEIIVLDNGRIVERGTHEELLAAGGLYAEMWRR 497
|
Length = 497 |
| >gnl|CDD|213205 cd03238, ABC_UvrA, ATP-binding cassette domain of the excision repair protein UvrA | Back alignment and domain information |
|---|
Score = 40.8 bits (96), Expect = 0.001
Identities = 28/92 (30%), Positives = 44/92 (47%), Gaps = 11/92 (11%)
Query: 72 ISGGQKKRV-TTGEMMVGPALALF-MDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISL 129
+SGG+ +RV E+ P LF +DE STGL Q++ ++ I+ G VI L
Sbjct: 88 LSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKG--LIDLGNTVI-L 144
Query: 130 LQPAPETYDLFDDIILL------SDGQIVYQG 155
++ + D II S G++V+ G
Sbjct: 145 IEHNLDVLSSADWIIDFGPGSGKSGGKVVFSG 176
|
Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. Length = 176 |
| >gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 42.6 bits (101), Expect = 0.001
Identities = 32/99 (32%), Positives = 49/99 (49%), Gaps = 19/99 (19%)
Query: 73 SGGQKKRVTTGEMMV-GPALALFMDEISTGLDSSTTFQIVNCLR--QNIH------INSG 123
SGGQ++R+ ++ P L L +DE ++ LD S Q+++ LR Q H I+
Sbjct: 428 SGGQRQRIAIARALILKPELIL-LDEPTSALDRSVQAQVLDLLRDLQQKHGLSYLFISHD 486
Query: 124 TAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLE 162
AV+ L +I++ DG+IV QGP E V
Sbjct: 487 LAVVRALC---------HRVIVMRDGKIVEQGPTEAVFA 516
|
Length = 534 |
| >gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Score = 42.5 bits (100), Expect = 0.001
Identities = 40/168 (23%), Positives = 70/168 (41%), Gaps = 13/168 (7%)
Query: 5 WNPAEMLTELARREKA-------AGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLD 57
WN ++ L R+ A A D +D ++A+ G E + ++ +
Sbjct: 97 WNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEIGYEGKEAVGRAVDLIEMV 156
Query: 58 VCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQN 117
+ + + R +SGG+K+RV + DE + LD T + N L +
Sbjct: 157 QLSHRIT--HIARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEA 214
Query: 118 IHINSGTAVISLLQPAPETY-DLFDDIILLSDGQIVYQG-PRELVLEF 163
+ + + V++ PE DL D I L +G+I +G P E+V F
Sbjct: 215 VKASGISMVLT--SHWPEVIEDLSDKAIWLENGEIKEEGTPDEVVAVF 260
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520 |
| >gnl|CDD|237648 PRK14250, PRK14250, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 41.3 bits (97), Expect = 0.001
Identities = 28/111 (25%), Positives = 52/111 (46%), Gaps = 5/111 (4%)
Query: 42 EANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTG 101
E NV +YYL ++GL+ T ++ +SGG+ +RV+ + L +DE ++
Sbjct: 106 EKNVDVEYYLSIVGLNKEYAT----RDVKNLSGGEAQRVSIARTLANNPEVLLLDEPTSA 161
Query: 102 LDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIV 152
LD ++T +I+ L + VI + + + D L+ G +V
Sbjct: 162 LDPTST-EIIEELIVKLKNKMNLTVIWITHNMEQAKRIGDYTAFLNKGILV 211
|
Length = 241 |
| >gnl|CDD|182980 PRK11124, artP, arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 41.9 bits (99), Expect = 0.001
Identities = 47/183 (25%), Positives = 80/183 (43%), Gaps = 30/183 (16%)
Query: 647 LMGVSGAGKTTLMDVLAGRKTGGYITGNITISGY---------PKKQETFARISGYCEQN 697
L+G SGAGK++L+ VL + +G + I+G K R G Q
Sbjct: 33 LLGPSGAGKSSLLRVLNLLEMPR--SGTLNIAGNHFDFSKTPSDKAIRELRRNVGMVFQQ 90
Query: 698 DIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELN------PLRQSLVGLP 751
P +T+ ++L+ A R+ + + ++++E + L PL
Sbjct: 91 YNLWPHLTVQQNLI-EAPCRVL-GLSKDQALARAEKLLERLRLKPYADRFPLH------- 141
Query: 752 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCT 811
LS Q++R+ IA L+ P ++ DEPT+ LD A ++ +R +TG T V
Sbjct: 142 ----LSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIV 197
Query: 812 IHQ 814
H+
Sbjct: 198 THE 200
|
Length = 242 |
| >gnl|CDD|184593 PRK14258, PRK14258, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 41.9 bits (98), Expect = 0.001
Identities = 48/221 (21%), Positives = 92/221 (41%), Gaps = 34/221 (15%)
Query: 627 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK--KQ 684
D +L GVS +TA++G SG GK+T + L + + + G + Q
Sbjct: 18 DTQKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNE---LESEVRVEGRVEFFNQ 74
Query: 685 ETFAR---ISGYCEQNDIHSPF-----VTIYESLLFSAWL---RLSPEVDSETRKMFIDE 733
+ R ++ Q + P +++Y+++ + + R E+D ++
Sbjct: 75 NIYERRVNLNRLRRQVSMVHPKPNLFPMSVYDNVAYGVKIVGWRPKLEIDD-----IVES 129
Query: 734 VMELVEL-----NPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 788
++ +L + + +S + L G Q++RL IA L P ++ MDEP GLD
Sbjct: 130 ALKDADLWDEIKHKIHKSALDLSG------GQQQRLCIARALAVKPKVLLMDEPCFGLDP 183
Query: 789 RAAAIVMRTVRN-TVDTGRTVVCTIHQ-PSIDIFEAFDELF 827
A+ V +++ + + T+V H + F F
Sbjct: 184 IASMKVESLIQSLRLRSELTMVIVSHNLHQVSRLSDFTAFF 224
|
Length = 261 |
| >gnl|CDD|237647 PRK14248, PRK14248, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 41.5 bits (97), Expect = 0.001
Identities = 47/174 (27%), Positives = 77/174 (44%), Gaps = 32/174 (18%)
Query: 632 LNGVSGAFRPGVLTALMGVSGAGKTTLM-------DVLAGRKTGGYIT-GNITISGYPKK 683
+N +S +TAL+G SG GK+T + D++ ++ G I + I
Sbjct: 37 VNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNIN 96
Query: 684 QETFARISGYCEQNDIHSPF-VTIYESLLFSAWLRLSPEVDSETRKMFIDEVME--LVEL 740
R G Q +PF +IY ++ + L+ + E RK +DE++E L +
Sbjct: 97 VVNLRREIGMVFQKP--NPFPKSIYNNITHA--LKYA----GERRKSVLDEIVEESLTKA 148
Query: 741 -------NPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 787
+ L S + L G Q++RL IA L P+++ +DEP S LD
Sbjct: 149 ALWDEVKDRLHSSALSLSG------GQQQRLCIARTLAMKPAVLLLDEPASALD 196
|
Length = 268 |
| >gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug resistance protein-like transporters | Back alignment and domain information |
|---|
Score = 40.1 bits (95), Expect = 0.002
Identities = 25/88 (28%), Positives = 37/88 (42%), Gaps = 22/88 (25%)
Query: 72 ISGGQKKRVTTGEMMVGPALA---------LFMDEISTGLDSSTTFQIVNCLRQNIHINS 122
+SGGQ++R+ A+A L +DE ++ LD T I+ LR
Sbjct: 97 LSGGQRQRI---------AIARALLRDPPILILDEATSALDPETEALILEALRALAK-GK 146
Query: 123 GTAVISLLQPAPETYDLFDDIILLSDGQ 150
VI+ T D II+L DG+
Sbjct: 147 TVIVIA---HRLSTIRDADRIIVLDDGR 171
|
The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 171 |
| >gnl|CDD|163585 TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 41.3 bits (97), Expect = 0.002
Identities = 37/168 (22%), Positives = 64/168 (38%), Gaps = 24/168 (14%)
Query: 11 LTELARREKA---AGIKPDPDIDV--------------YMKAIATEGQEANVITDYYLKV 53
L L+RR +A A ++ D D V + A + + D L
Sbjct: 65 LHGLSRRARARRVALVEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALAR 124
Query: 54 LGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNC 113
L AD + +SGG+++RV + L +DE + LD + +
Sbjct: 125 TELSHLADRDMST-----LSGGERQRVHVARALAQEPKLLLLDEPTNHLDVRAQLETLAL 179
Query: 114 LRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVL 161
+R+ +G V++ L D +++L G++V GP VL
Sbjct: 180 VRE--LAATGVTVVAALHDLNLAASYCDHVVVLDGGRVVAAGPPREVL 225
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. Length = 256 |
| >gnl|CDD|184198 PRK13638, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 41.5 bits (97), Expect = 0.002
Identities = 42/159 (26%), Positives = 70/159 (44%), Gaps = 30/159 (18%)
Query: 14 LARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEM----- 68
LA R++ A + DP+ ++ I ++ + L+ LG+ T DE
Sbjct: 73 LALRQQVATVFQDPEQQIFYTDIDSD-------IAFSLRNLGVPEAEITRRVDEALTLVD 125
Query: 69 --------IRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLR----Q 116
I+ +S GQKKRV +V A L +DE + GLD + Q++ +R Q
Sbjct: 126 AQHFRHQPIQCLSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQ 185
Query: 117 NIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQG 155
H+ + I L+ Y++ D + +L GQI+ G
Sbjct: 186 GNHVIISSHDIDLI------YEISDAVYVLRQGQILTHG 218
|
Length = 271 |
| >gnl|CDD|184199 PRK13639, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 40.8 bits (96), Expect = 0.002
Identities = 32/100 (32%), Positives = 54/100 (54%), Gaps = 25/100 (25%)
Query: 72 ISGGQKKRVT-TGEMMVGPALALFMDEISTGLDSSTTFQIVNCL----RQNIHINSGTAV 126
+SGGQKKRV G + + P + + +DE ++GLD QI+ L ++ I T +
Sbjct: 138 LSGGQKKRVAIAGILAMKPEI-IVLDEPTSGLDPMGASQIMKLLYDLNKEGI-----TII 191
Query: 127 ISLLQPAPETYDL------FDDIILLSDGQIVYQG-PREL 159
IS T+D+ D + ++SDG+I+ +G P+E+
Sbjct: 192 IS-------THDVDLVPVYADKVYVMSDGKIIKEGTPKEV 224
|
Length = 275 |
| >gnl|CDD|226592 COG4107, PhnK, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 40.9 bits (96), Expect = 0.002
Identities = 30/98 (30%), Positives = 52/98 (53%), Gaps = 3/98 (3%)
Query: 66 DEMIRGISGGQKKRVTTGEMMV-GPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGT 124
D++ R SGG ++R+ +V P L +FMDE + GLD S ++++ LR + G
Sbjct: 146 DDLPRTFSGGMQQRLQIARNLVTRPRL-VFMDEPTGGLDVSVQARLLDLLR-GLVRELGL 203
Query: 125 AVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLE 162
AV+ + L D ++++ GQ+V G + VL+
Sbjct: 204 AVVIVTHDLAVARLLADRLMVMKQGQVVESGLTDRVLD 241
|
Length = 258 |
| >gnl|CDD|213218 cd03251, ABCC_MsbA, ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 40.7 bits (96), Expect = 0.002
Identities = 30/101 (29%), Positives = 53/101 (52%), Gaps = 17/101 (16%)
Query: 61 DTMVGDEMIRGI--SGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNI 118
DT++G+ RG+ SGGQ++R+ ++ L +DE ++ LD+ + + L + +
Sbjct: 129 DTVIGE---RGVKLSGGQRQRIAIARALLKDPPILILDEATSALDTESERLVQAAL-ERL 184
Query: 119 HINSGTAVI----SLLQPAPETYDLFDDIILLSDGQIVYQG 155
N T VI S ++ A D I++L DG+IV +G
Sbjct: 185 MKNRTTFVIAHRLSTIENA-------DRIVVLEDGKIVERG 218
|
MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 234 |
| >gnl|CDD|184209 PRK13650, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 41.6 bits (98), Expect = 0.002
Identities = 26/81 (32%), Positives = 40/81 (49%), Gaps = 3/81 (3%)
Query: 756 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQ 814
LS Q++R+ IA + P II +DE TS LD +++T++ D TV+ H
Sbjct: 141 LSGGQKQRVAIAGAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITH- 199
Query: 815 PSIDIFEAFDELFLMKRGGQE 835
+D D + +MK G E
Sbjct: 200 -DLDEVALSDRVLVMKNGQVE 219
|
Length = 279 |
| >gnl|CDD|172732 PRK14244, PRK14244, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 41.4 bits (97), Expect = 0.002
Identities = 46/181 (25%), Positives = 77/181 (42%), Gaps = 43/181 (23%)
Query: 644 LTALMGVSGAGKTTLM-------DVLAGRKTGGYITGNITISG---YPKKQETF---ARI 690
+TA +G SG GK+T + D + K + G + I G Y A++
Sbjct: 33 VTAFIGPSGCGKSTFLRCFNRMNDFVPNCK----VKGELDIDGIDVYSVDTNVVLLRAKV 88
Query: 691 SGYCEQNDIHSPFV-TIYESLLFSAWLRLSPEVDSETR-KMFIDEVMELVELNPLRQSLV 748
G Q +PF +IY+++ + P++ + K +DE++E L V
Sbjct: 89 -GMVFQKP--NPFPKSIYDNVAYG------PKLHGLAKNKKKLDEIVE----KSLTS--V 133
Query: 749 GL---------PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 799
GL LS Q++RL IA + P+++ MDEP S LD A ++ ++
Sbjct: 134 GLWEELGDRLKDSAFELSGGQQQRLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQ 193
Query: 800 N 800
Sbjct: 194 E 194
|
Length = 251 |
| >gnl|CDD|172756 PRK14268, PRK14268, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 41.1 bits (96), Expect = 0.002
Identities = 57/199 (28%), Positives = 86/199 (43%), Gaps = 32/199 (16%)
Query: 632 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRK---TGGYITGNITISG---YPKKQE 685
L VS +TAL+G SG GK+T + L I G ++I G Y +
Sbjct: 28 LKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVD 87
Query: 686 T--FARISGYCEQNDIHSPF-VTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP 742
+ G Q +PF ++IY+++ + P + +K +D V+E N
Sbjct: 88 VVELRKNVGMVFQKP--NPFPMSIYDNVAYG------PRIHGANKKD-LDGVVE----NA 134
Query: 743 LRQSLV--------GLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV 794
LR + + P +S LS Q++RL IA L P II DEPTS LD + A +
Sbjct: 135 LRSAALWDETSDRLKSPALS-LSGGQQQRLCIARTLAVKPKIILFDEPTSALDPISTARI 193
Query: 795 MRTVRNTVDTGRTVVCTIH 813
+ N + T+V H
Sbjct: 194 EDLIMN-LKKDYTIVIVTH 211
|
Length = 258 |
| >gnl|CDD|188317 TIGR03415, ABC_choXWV_ATP, choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 41.7 bits (98), Expect = 0.002
Identities = 49/173 (28%), Positives = 76/173 (43%), Gaps = 26/173 (15%)
Query: 629 LVL-LNGVSGAFRPGVLTALMGVSGAGKTTLM-------DVLAGR---KTGGYITGNITI 677
LVL ++ S G + LMG+SG+GK+TL+ V G K G G++ +
Sbjct: 36 LVLGVHNASLDIEEGEICVLMGLSGSGKSTLLRAVNGLNPVSRGSVLVKDGD---GSVDV 92
Query: 678 SGYPKKQETFAR---ISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEV 734
+ R +S +Q + P+ T+ E++ F L + +E RK +DE
Sbjct: 93 ANCDAATLRRLRTHRVSMVFQQFAL-LPWRTVEENVAFG--LEMQGMPKAERRKR-VDEQ 148
Query: 735 MELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 787
+ELV L G LS ++R+ +A I+ MDEP S LD
Sbjct: 149 LELVGLAQWADRKPG-----ELSGGMQQRVGLARAFATEAPILLMDEPFSALD 196
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines [Transport and binding proteins, Amino acids, peptides and amines]. Length = 382 |
| >gnl|CDD|182692 PRK10744, pstB, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 41.1 bits (97), Expect = 0.002
Identities = 48/175 (27%), Positives = 75/175 (42%), Gaps = 34/175 (19%)
Query: 632 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVL-------AGRKTGGYIT---GNITISGYP 681
L ++ +TA +G SG GK+TL+ ++ G I NI
Sbjct: 29 LKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQD 88
Query: 682 KKQETFARISGYCEQNDIHSPF-VTIYESLLFSAWL--RLS-PEVDSE-----TRKMFID 732
A++ G Q +PF ++IY+++ F L +LS E+D T+ +
Sbjct: 89 IAL-LRAKV-GMVFQKP--TPFPMSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWN 144
Query: 733 EVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 787
EV + L QS G LS Q++RL IA + P ++ +DEP S LD
Sbjct: 145 EVK-----DKLHQS--GY----SLSGGQQQRLCIARGIAIRPEVLLLDEPCSALD 188
|
Length = 260 |
| >gnl|CDD|240327 PTZ00243, PTZ00243, ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 42.1 bits (99), Expect = 0.002
Identities = 56/207 (27%), Positives = 83/207 (40%), Gaps = 52/207 (25%)
Query: 625 LEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ 684
LE K VLL VS + G LT ++G +G+GK+TL+ L IS +
Sbjct: 670 LEPK-VLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSL---------LSQFEIS----EG 715
Query: 685 ETFARIS-GYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDE-----VMELV 738
+A S Y Q AW+ ++ V +F DE + + V
Sbjct: 716 RVWAERSIAYVPQQ----------------AWI-MNATVRGNI--LFFDEEDAARLADAV 756
Query: 739 ELNPLRQSLVGLPGVSGLSTE-----------QRKRLTIAVELVANPSIIFMDEPTSGLD 787
++ L L L G GL TE Q+ R+++A + AN + +D+P S LD
Sbjct: 757 RVSQLEADLAQLGG--GLETEIGEKGVNLSGGQKARVSLARAVYANRDVYLLDDPLSALD 814
Query: 788 ARAAAIVMRTVRNTVDTGRTVVCTIHQ 814
A V+ G+T V HQ
Sbjct: 815 AHVGERVVEECFLGALAGKTRVLATHQ 841
|
Length = 1560 |
| >gnl|CDD|236947 PRK11650, ugpC, glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 41.4 bits (98), Expect = 0.002
Identities = 51/183 (27%), Positives = 79/183 (43%), Gaps = 46/183 (25%)
Query: 632 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIT-GNITISGYPKKQETFARI 690
+ G+ G L+G SG GK+TL+ ++AG + IT G I I G R+
Sbjct: 20 IKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLER---ITSGEIWIGG---------RV 67
Query: 691 SGYCE----------QNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVEL 740
E QN P +++ E++ + +R P+ + E R + E ++EL
Sbjct: 68 VNELEPADRDIAMVFQNYALYPHMSVRENMAYGLKIRGMPKAEIEER---VAEAARILEL 124
Query: 741 NPL-----RQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA--RAAAI 793
PL R+ LS QR+R+ + +V P++ DEP S LDA R
Sbjct: 125 EPLLDRKPRE----------LSGGQRQRVAMGRAIVREPAVFLFDEPLSNLDAKLRVQ-- 172
Query: 794 VMR 796
MR
Sbjct: 173 -MR 174
|
Length = 356 |
| >gnl|CDD|131368 TIGR02315, ABC_phnC, phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 40.4 bits (95), Expect = 0.003
Identities = 31/91 (34%), Positives = 46/91 (50%), Gaps = 13/91 (14%)
Query: 72 ISGGQKKRVTTGE-MMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSG-TAVISL 129
+SGGQ++RV + P L L DE LD T+ Q+++ L+ I+ G T +I+L
Sbjct: 146 LSGGQQQRVAIARALAQQPDLIL-ADEPIASLDPKTSKQVMDYLK-RINKEDGITVIINL 203
Query: 130 LQPAPETYDL----FDDIILLSDGQIVYQGP 156
Q DL D I+ L G+IV+ G
Sbjct: 204 HQ-----VDLAKKYADRIVGLKAGEIVFDGA 229
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates [Transport and binding proteins, Anions]. Length = 243 |
| >gnl|CDD|223473 COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 40.6 bits (96), Expect = 0.003
Identities = 41/152 (26%), Positives = 62/152 (40%), Gaps = 41/152 (26%)
Query: 51 LKVLGLDVCADTMVGDEMIR-----GISGGQKKRVTTGEMMV-GPALALFMDEISTGLDS 104
++LGLD +E + G SGG+KKR ++++ P LA+ +DE +GLD
Sbjct: 127 AELLGLD--------EEFLERYVNEGFSGGEKKRNEILQLLLLEPKLAI-LDEPDSGLDI 177
Query: 105 STTFQI---VNCLRQNIHINSGTAVISLLQPAPETYDLFDDII-----LLSDGQIVYQGP 156
+ +N LR+ G +I+ Q L D I +L DG+IV G
Sbjct: 178 DALKIVAEGINALREE---GRGVLIITHYQ------RLLDYIKPDKVHVLYDGRIVKSGD 228
Query: 157 RELVLEFFASMGFRCPKRKGVADFLQEVTSRK 188
EL E + KG + V
Sbjct: 229 PELAEEL---------EEKGYDWLKEVVGGEA 251
|
Length = 251 |
| >gnl|CDD|131197 TIGR02142, modC_ABC, molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 40.9 bits (96), Expect = 0.003
Identities = 30/124 (24%), Positives = 55/124 (44%), Gaps = 6/124 (4%)
Query: 38 TEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDE 97
E + + +++LG+ + G +SGG+K+RV G ++ L MDE
Sbjct: 103 ARPSERRISFERVIELLGIGHLLGRLPGR-----LSGGEKQRVAIGRALLSSPRLLLMDE 157
Query: 98 ISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPR 157
LD ++I+ L + +H G ++ + E L D +++L DG++ GP
Sbjct: 158 PLAALDDPRKYEILPYL-ERLHAEFGIPILYVSHSLQEVLRLADRVVVLEDGRVAAAGPI 216
Query: 158 ELVL 161
V
Sbjct: 217 AEVW 220
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter [Transport and binding proteins, Anions]. Length = 354 |
| >gnl|CDD|213217 cd03250, ABCC_MRP_domain1, ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C | Back alignment and domain information |
|---|
Score = 40.1 bits (95), Expect = 0.003
Identities = 31/132 (23%), Positives = 54/132 (40%), Gaps = 51/132 (38%)
Query: 48 DYYLKVLGLDVCA------------DTMVGDEMIRGI--SGGQKKRVTTGEMMVGPALA- 92
+ Y KV+ CA T +G+ +GI SGGQK+R+ +LA
Sbjct: 95 ERYEKVI--KACALEPDLEILPDGDLTEIGE---KGINLSGGQKQRI---------SLAR 140
Query: 93 --------LFMDEISTGLDSSTTFQIV-NCLRQNIHINSGTAV-----ISLLQPAPETYD 138
+D+ + +D+ I NC+ + +N+ T + + LL A
Sbjct: 141 AVYSDADIYLLDDPLSAVDAHVGRHIFENCILGLL-LNNKTRILVTHQLQLLPHA----- 194
Query: 139 LFDDIILLSDGQ 150
D I++L +G+
Sbjct: 195 --DQIVVLDNGR 204
|
This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 204 |
| >gnl|CDD|188208 TIGR02323, CP_lyasePhnK, phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Score = 40.6 bits (95), Expect = 0.003
Identities = 29/98 (29%), Positives = 52/98 (53%), Gaps = 3/98 (3%)
Query: 66 DEMIRGISGGQKKRVTTGEMMV-GPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGT 124
D++ R SGG ++R+ +V P L +FMDE + GLD S ++++ LR + + G
Sbjct: 143 DDLPRAFSGGMQQRLQIARNLVTRPRL-VFMDEPTGGLDVSVQARLLDLLRGLV-RDLGL 200
Query: 125 AVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLE 162
AVI + L ++++ G++V G + VL+
Sbjct: 201 AVIIVTHDLGVARLLAQRLLVMQQGRVVESGLTDQVLD 238
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se [Central intermediary metabolism, Phosphorus compounds]. Length = 253 |
| >gnl|CDD|213225 cd03258, ABC_MetN_methionine_transporter, ATP-binding cassette domain of methionine transporter | Back alignment and domain information |
|---|
Score = 40.3 bits (95), Expect = 0.003
Identities = 32/105 (30%), Positives = 48/105 (45%), Gaps = 26/105 (24%)
Query: 72 ISGGQKKRVTTGEMMVGPALA-----LFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAV 126
+SGGQK+RV + ALA L DE ++ LD TT I+ LR IN +
Sbjct: 141 LSGGQKQRVG-----IARALANNPKVLLCDEATSALDPETTQSILALLRD---INRELGL 192
Query: 127 ISLLQPAPETY------DLFDDIILLSDGQIVYQGPRELVLEFFA 165
+L T+ + D + ++ G++V +G V E FA
Sbjct: 193 TIVLI----THEMEVVKRICDRVAVMEKGEVVEEGT---VEEVFA 230
|
MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 233 |
| >gnl|CDD|222036 pfam13304, AAA_21, AAA domain | Back alignment and domain information |
|---|
Score = 40.5 bits (94), Expect = 0.003
Identities = 11/54 (20%), Positives = 26/54 (48%)
Query: 764 LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSI 817
L + + S++ +DEP +GL + ++ ++ + G ++ T H P +
Sbjct: 201 LLALLSALPKGSLLLIDEPENGLHPKLLRKLVELLKELSEKGAQLIFTTHSPLL 254
|
Length = 256 |
| >gnl|CDD|188098 TIGR00957, MRP_assoc_pro, multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Score = 41.5 bits (97), Expect = 0.003
Identities = 52/216 (24%), Positives = 97/216 (44%), Gaps = 32/216 (14%)
Query: 632 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGR--KTGGYITGNITISGYPKKQETFAR 689
LNG++ + G L A++G G GK++L+ L K G++ +++ P++ A
Sbjct: 654 LNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKGSVAYVPQQ----AW 709
Query: 690 ISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPL---RQS 746
I QND ++ E++LF L + + + ++ L +L L ++
Sbjct: 710 I-----QND------SLRENILFGKAL------NEKYYQQVLEACALLPDLEILPSGDRT 752
Query: 747 LVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT--VDT 804
+G GV+ LS Q++R+++A + +N I D+P S +DA + V V
Sbjct: 753 EIGEKGVN-LSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFEHVIGPEGVLK 811
Query: 805 GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGP 840
+T + H I D + +M GG+ +G
Sbjct: 812 NKTRILVTH--GISYLPQVDVIIVMS-GGKISEMGS 844
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved [Transport and binding proteins, Other]. Length = 1522 |
| >gnl|CDD|213222 cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein | Back alignment and domain information |
|---|
Score = 39.8 bits (94), Expect = 0.004
Identities = 32/103 (31%), Positives = 54/103 (52%), Gaps = 11/103 (10%)
Query: 51 LKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGE-MMVGPALALFMDEISTG-LDSSTTF 108
L+ +GL + E+ SGGQ++RV + P + + DE TG LDS T
Sbjct: 125 LERVGLGDRLNHYPS-EL----SGGQQQRVAIARALANDPKI-ILADE-PTGNLDSETGK 177
Query: 109 QIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQI 151
+++ LR+ ++ +GT ++ ++ PE + D II L DG+I
Sbjct: 178 EVMELLRE-LNKEAGTTIV-VVTHDPELAEYADRIIELRDGKI 218
|
This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. Length = 218 |
| >gnl|CDD|233596 TIGR01846, type_I_sec_HlyB, type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Score = 41.3 bits (97), Expect = 0.004
Identities = 33/101 (32%), Positives = 48/101 (47%), Gaps = 5/101 (4%)
Query: 61 DTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHI 120
+T VG E +SGGQ++R+ +VG L DE ++ LD + I+ +R+ I
Sbjct: 584 NTEVG-EKGANLSGGQRQRIAIARALVGNPRILIFDEATSALDYESEALIMRNMRE---I 639
Query: 121 NSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVL 161
G VI + T D II+L GQI G E +L
Sbjct: 640 CRGRTVIIIAHRL-STVRACDRIIVLEKGQIAESGRHEELL 679
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 694 |
| >gnl|CDD|132050 TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 40.2 bits (94), Expect = 0.004
Identities = 36/129 (27%), Positives = 61/129 (47%), Gaps = 18/129 (13%)
Query: 63 MVG-----DEMIRGISGGQKKRVTTGE-MMVGPALALFMDEISTGLDSSTTFQIVNCLRQ 116
MVG D M +SGGQ++RV + + P + LF DE+++ LD +++N +R+
Sbjct: 133 MVGLADKADHMPAQLSGGQQQRVAIARALAMRPKVMLF-DEVTSALDPELVGEVLNVIRR 191
Query: 117 NIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQG-PRELVLEFFASMGFRCPKRK 175
+ T ++ + + D + G+IV QG P E+ FR PK +
Sbjct: 192 LASEHDLTMLL-VTHEMGFAREFADRVCFFDKGRIVEQGKPDEI---------FRQPKEE 241
Query: 176 GVADFLQEV 184
+FL +V
Sbjct: 242 RTREFLSKV 250
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. Length = 252 |
| >gnl|CDD|182733 PRK10790, PRK10790, putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Score = 40.9 bits (96), Expect = 0.004
Identities = 63/226 (27%), Positives = 101/226 (44%), Gaps = 43/226 (19%)
Query: 632 LNGVSGAFRPG--VLT------------ALMGVSGAGKTTLMDVLAGRKTGGYIT---GN 674
++ VS A+R VL AL+G +G+GK+TL +L G Y G
Sbjct: 343 IDNVSFAYRDDNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMG-----YYPLTEGE 397
Query: 675 ITISGYPKKQETFA--RISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFID 732
I + G P + + R Q D P V + ++ L A + L ++ E +
Sbjct: 398 IRLDGRPLSSLSHSVLRQGVAMVQQD---P-VVLADTFL--ANVTLGRDISEEQ----VW 447
Query: 733 EVMELVELNPLRQSLV-GLPGVSG-----LSTEQRKRLTIAVELVANPSIIFMDEPTSGL 786
+ +E V+L L +SL GL G LS Q++ L +A LV P I+ +DE T+ +
Sbjct: 448 QALETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQLLALARVLVQTPQILILDEATANI 507
Query: 787 DARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 832
D+ + + + V T+V H+ S I EA D + ++ RG
Sbjct: 508 DSGTEQAIQQALA-AVREHTTLVVIAHRLST-IVEA-DTILVLHRG 550
|
Length = 592 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 1202 | |||
| KOG0065 | 1391 | consensus Pleiotropic drug resistance proteins (PD | 100.0 | |
| PLN03140 | 1470 | ABC transporter G family member; Provisional | 100.0 | |
| TIGR00956 | 1394 | 3a01205 Pleiotropic Drug Resistance (PDR) Family p | 100.0 | |
| KOG0061 | 613 | consensus Transporter, ABC superfamily (Breast can | 100.0 | |
| TIGR00955 | 617 | 3a01204 The Eye Pigment Precursor Transporter (EPP | 100.0 | |
| PLN03211 | 659 | ABC transporter G-25; Provisional | 100.0 | |
| TIGR00956 | 1394 | 3a01205 Pleiotropic Drug Resistance (PDR) Family p | 100.0 | |
| PLN03140 | 1470 | ABC transporter G family member; Provisional | 100.0 | |
| KOG0065 | 1391 | consensus Pleiotropic drug resistance proteins (PD | 100.0 | |
| KOG0055 | 1228 | consensus Multidrug/pheromone exporter, ABC superf | 100.0 | |
| KOG0061 | 613 | consensus Transporter, ABC superfamily (Breast can | 100.0 | |
| PLN03211 | 659 | ABC transporter G-25; Provisional | 100.0 | |
| TIGR00955 | 617 | 3a01204 The Eye Pigment Precursor Transporter (EPP | 100.0 | |
| PTZ00265 | 1466 | multidrug resistance protein (mdr1); Provisional | 100.0 | |
| TIGR01257 | 2272 | rim_protein retinal-specific rim ABC transporter. | 100.0 | |
| PLN03130 | 1622 | ABC transporter C family member; Provisional | 100.0 | |
| PLN03232 | 1495 | ABC transporter C family member; Provisional | 100.0 | |
| COG1123 | 539 | ATPase components of various ABC-type transport sy | 100.0 | |
| TIGR00957 | 1522 | MRP_assoc_pro multi drug resistance-associated pro | 100.0 | |
| PTZ00243 | 1560 | ABC transporter; Provisional | 100.0 | |
| PRK15134 | 529 | microcin C ABC transporter ATP-binding protein Yej | 100.0 | |
| TIGR03269 | 520 | met_CoM_red_A2 methyl coenzyme M reductase system, | 100.0 | |
| PRK10261 | 623 | glutathione transporter ATP-binding protein; Provi | 100.0 | |
| TIGR01271 | 1490 | CFTR_protein cystic fibrosis transmembrane conduct | 100.0 | |
| PRK13549 | 506 | xylose transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK09700 | 510 | D-allose transporter ATP-binding protein; Provisio | 100.0 | |
| PRK10762 | 501 | D-ribose transporter ATP binding protein; Provisio | 100.0 | |
| COG4172 | 534 | ABC-type uncharacterized transport system, duplica | 100.0 | |
| KOG0054 | 1381 | consensus Multidrug resistance-associated protein/ | 100.0 | |
| COG1126 | 240 | GlnQ ABC-type polar amino acid transport system, A | 100.0 | |
| TIGR02633 | 500 | xylG D-xylose ABC transporter, ATP-binding protein | 100.0 | |
| PRK15439 | 510 | autoinducer 2 ABC transporter ATP-binding protein | 100.0 | |
| PRK11288 | 501 | araG L-arabinose transporter ATP-binding protein; | 100.0 | |
| PRK10938 | 490 | putative molybdenum transport ATP-binding protein | 100.0 | |
| PRK10982 | 491 | galactose/methyl galaxtoside transporter ATP-bindi | 100.0 | |
| COG1135 | 339 | AbcC ABC-type metal ion transport system, ATPase c | 100.0 | |
| COG1125 | 309 | OpuBA ABC-type proline/glycine betaine transport s | 100.0 | |
| COG1116 | 248 | TauB ABC-type nitrate/sulfonate/bicarbonate transp | 100.0 | |
| COG1127 | 263 | Ttg2A ABC-type transport system involved in resist | 100.0 | |
| KOG0058 | 716 | consensus Peptide exporter, ABC superfamily [Intra | 100.0 | |
| PRK15064 | 530 | ABC transporter ATP-binding protein; Provisional | 100.0 | |
| PRK11819 | 556 | putative ABC transporter ATP-binding protein; Revi | 100.0 | |
| COG1121 | 254 | ZnuC ABC-type Mn/Zn transport systems, ATPase comp | 100.0 | |
| KOG0055 | 1228 | consensus Multidrug/pheromone exporter, ABC superf | 100.0 | |
| COG3638 | 258 | ABC-type phosphate/phosphonate transport system, A | 100.0 | |
| PRK13409 | 590 | putative ATPase RIL; Provisional | 100.0 | |
| COG1131 | 293 | CcmA ABC-type multidrug transport system, ATPase c | 100.0 | |
| COG1136 | 226 | SalX ABC-type antimicrobial peptide transport syst | 100.0 | |
| COG1120 | 258 | FepC ABC-type cobalamin/Fe3+-siderophores transpor | 100.0 | |
| TIGR03719 | 552 | ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa | 100.0 | |
| COG1118 | 345 | CysA ABC-type sulfate/molybdate transport systems, | 100.0 | |
| COG4555 | 245 | NatA ABC-type Na+ transport system, ATPase compone | 100.0 | |
| COG3842 | 352 | PotA ABC-type spermidine/putrescine transport syst | 100.0 | |
| COG3839 | 338 | MalK ABC-type sugar transport systems, ATPase comp | 100.0 | |
| COG2884 | 223 | FtsE Predicted ATPase involved in cell division [C | 100.0 | |
| PRK10636 | 638 | putative ABC transporter ATP-binding protein; Prov | 100.0 | |
| PRK11147 | 635 | ABC transporter ATPase component; Reviewed | 100.0 | |
| PLN03073 | 718 | ABC transporter F family; Provisional | 100.0 | |
| COG1117 | 253 | PstB ABC-type phosphate transport system, ATPase c | 100.0 | |
| TIGR01257 | 2272 | rim_protein retinal-specific rim ABC transporter. | 100.0 | |
| PRK13537 | 306 | nodulation ABC transporter NodI; Provisional | 100.0 | |
| COG3840 | 231 | ThiQ ABC-type thiamine transport system, ATPase co | 100.0 | |
| TIGR02314 | 343 | ABC_MetN D-methionine ABC transporter, ATP-binding | 100.0 | |
| COG1137 | 243 | YhbG ABC-type (unclassified) transport system, ATP | 100.0 | |
| PRK11650 | 356 | ugpC glycerol-3-phosphate transporter ATP-binding | 100.0 | |
| TIGR03265 | 353 | PhnT2 putative 2-aminoethylphosphonate ABC transpo | 100.0 | |
| PRK11432 | 351 | fbpC ferric transporter ATP-binding subunit; Provi | 100.0 | |
| COG1124 | 252 | DppF ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| TIGR03258 | 362 | PhnT 2-aminoethylphosphonate ABC transport system, | 100.0 | |
| PRK13536 | 340 | nodulation factor exporter subunit NodI; Provision | 100.0 | |
| COG1122 | 235 | CbiO ABC-type cobalt transport system, ATPase comp | 100.0 | |
| cd03261 | 235 | ABC_Org_Solvent_Resistant ABC (ATP-binding cassett | 100.0 | |
| PRK09452 | 375 | potA putrescine/spermidine ABC transporter ATPase | 100.0 | |
| PRK10851 | 353 | sulfate/thiosulfate transporter subunit; Provision | 100.0 | |
| PRK11607 | 377 | potG putrescine transporter ATP-binding subunit; P | 100.0 | |
| cd03259 | 213 | ABC_Carb_Solutes_like ABC Carbohydrate and Solute | 100.0 | |
| TIGR00960 | 216 | 3a0501s02 Type II (General) Secretory Pathway (IIS | 100.0 | |
| COG0410 | 237 | LivF ABC-type branched-chain amino acid transport | 100.0 | |
| cd03293 | 220 | ABC_NrtD_SsuB_transporters NrtD and SsuB are the A | 100.0 | |
| PRK11000 | 369 | maltose/maltodextrin transporter ATP-binding prote | 100.0 | |
| TIGR01288 | 303 | nodI ATP-binding ABC transporter family nodulation | 100.0 | |
| COG0411 | 250 | LivG ABC-type branched-chain amino acid transport | 100.0 | |
| cd03265 | 220 | ABC_DrrA DrrA is the ATP-binding protein component | 100.0 | |
| TIGR01186 | 363 | proV glycine betaine/L-proline transport ATP bindi | 100.0 | |
| TIGR01188 | 302 | drrA daunorubicin resistance ABC transporter ATP-b | 100.0 | |
| COG4152 | 300 | ABC-type uncharacterized transport system, ATPase | 100.0 | |
| cd03301 | 213 | ABC_MalK_N The N-terminal ATPase domain of the mal | 100.0 | |
| cd03269 | 210 | ABC_putative_ATPase This subfamily is involved in | 100.0 | |
| PRK11153 | 343 | metN DL-methionine transporter ATP-binding subunit | 100.0 | |
| cd03219 | 236 | ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans | 100.0 | |
| cd03296 | 239 | ABC_CysA_sulfate_importer Part of the ABC transpor | 100.0 | |
| COG2274 | 709 | SunT ABC-type bacteriocin/lantibiotic exporters, c | 100.0 | |
| PRK09536 | 402 | btuD corrinoid ABC transporter ATPase; Reviewed | 100.0 | |
| cd03218 | 232 | ABC_YhbG The ABC transporters belonging to the Yhb | 100.0 | |
| TIGR03522 | 301 | GldA_ABC_ATP gliding motility-associated ABC trans | 100.0 | |
| cd03260 | 227 | ABC_PstB_phosphate_transporter Phosphate uptake is | 100.0 | |
| cd03266 | 218 | ABC_NatA_sodium_exporter NatA is the ATPase compon | 100.0 | |
| cd03255 | 218 | ABC_MJ0796_Lo1CDE_FtsE This family is comprised of | 100.0 | |
| cd03234 | 226 | ABCG_White The White subfamily represents ABC tran | 100.0 | |
| COG4525 | 259 | TauB ABC-type taurine transport system, ATPase com | 100.0 | |
| cd03268 | 208 | ABC_BcrA_bacitracin_resist The BcrA subfamily repr | 100.0 | |
| cd03256 | 241 | ABC_PhnC_transporter ABC-type phosphate/phosphonat | 100.0 | |
| PRK13637 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03263 | 220 | ABC_subfamily_A The ABCA subfamily mediates the tr | 100.0 | |
| cd03294 | 269 | ABC_Pro_Gly_Bertaine This family comprises the gly | 100.0 | |
| cd03226 | 205 | ABC_cobalt_CbiO_domain2 Domain II of the ABC compo | 100.0 | |
| cd03258 | 233 | ABC_MetN_methionine_transporter MetN (also known a | 100.0 | |
| PRK13651 | 305 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK09493 | 240 | glnQ glutamine ABC transporter ATP-binding protein | 100.0 | |
| PRK11629 | 233 | lolD lipoprotein transporter ATP-binding subunit; | 100.0 | |
| PRK13647 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03292 | 214 | ABC_FtsE_transporter FtsE is a hydrophilic nucleot | 100.0 | |
| cd03224 | 222 | ABC_TM1139_LivF_branched LivF (TM1139) is part of | 100.0 | |
| PRK11264 | 250 | putative amino-acid ABC transporter ATP-binding pr | 100.0 | |
| TIGR02673 | 214 | FtsE cell division ATP-binding protein FtsE. This | 100.0 | |
| PRK13643 | 288 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11248 | 255 | tauB taurine transporter ATP-binding subunit; Prov | 100.0 | |
| TIGR02315 | 243 | ABC_phnC phosphonate ABC transporter, ATP-binding | 100.0 | |
| COG4175 | 386 | ProV ABC-type proline/glycine betaine transport sy | 100.0 | |
| PRK11831 | 269 | putative ABC transporter ATP-binding protein YrbF; | 100.0 | |
| cd03295 | 242 | ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin | 100.0 | |
| PRK13634 | 290 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| COG4559 | 259 | ABC-type hemin transport system, ATPase component | 100.0 | |
| PRK15079 | 331 | oligopeptide ABC transporter ATP-binding protein O | 100.0 | |
| PRK13631 | 320 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK10908 | 222 | cell division protein FtsE; Provisional | 100.0 | |
| cd03264 | 211 | ABC_drug_resistance_like ABC-type multidrug transp | 100.0 | |
| PRK10895 | 241 | lipopolysaccharide ABC transporter ATP-binding pro | 100.0 | |
| cd03262 | 213 | ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP- | 100.0 | |
| TIGR00972 | 247 | 3a0107s01c2 phosphate ABC transporter, ATP-binding | 100.0 | |
| COG4181 | 228 | Predicted ABC-type transport system involved in ly | 100.0 | |
| PRK13650 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK10619 | 257 | histidine/lysine/arginine/ornithine transporter su | 100.0 | |
| PRK11247 | 257 | ssuB aliphatic sulfonates transport ATP-binding su | 100.0 | |
| PRK13636 | 283 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR03864 | 236 | PQQ_ABC_ATP ABC transporter, ATP-binding subunit, | 100.0 | |
| cd03257 | 228 | ABC_NikE_OppD_transporters The ABC transporter sub | 100.0 | |
| PRK13646 | 286 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK10070 | 400 | glycine betaine transporter ATP-binding subunit; P | 100.0 | |
| cd03235 | 213 | ABC_Metallic_Cations ABC component of the metal-ty | 100.0 | |
| COG4988 | 559 | CydD ABC-type transport system involved in cytochr | 100.0 | |
| TIGR02211 | 221 | LolD_lipo_ex lipoprotein releasing system, ATP-bin | 100.0 | |
| PRK13644 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11124 | 242 | artP arginine transporter ATP-binding subunit; Pro | 100.0 | |
| PRK11614 | 237 | livF leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| cd03225 | 211 | ABC_cobalt_CbiO_domain1 Domain I of the ABC compon | 100.0 | |
| PRK13652 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13641 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14247 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR03740 | 223 | galliderm_ABC gallidermin-class lantibiotic protec | 100.0 | |
| TIGR03415 | 382 | ABC_choXWV_ATP choline ABC transporter, ATP-bindin | 100.0 | |
| PRK14273 | 254 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11300 | 255 | livG leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| PRK13548 | 258 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| PRK14268 | 258 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR03005 | 252 | ectoine_ehuA ectoine/hydroxyectoine ABC transporte | 100.0 | |
| COG0444 | 316 | DppD ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| PRK14267 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR01978 | 243 | sufC FeS assembly ATPase SufC. SufC is part of the | 100.0 | |
| PRK11022 | 326 | dppD dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| KOG0057 | 591 | consensus Mitochondrial Fe/S cluster exporter, ABC | 100.0 | |
| PRK13635 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR03411 | 242 | urea_trans_UrtD urea ABC transporter, ATP-binding | 100.0 | |
| PRK09473 | 330 | oppD oligopeptide transporter ATP-binding componen | 100.0 | |
| cd03298 | 211 | ABC_ThiQ_thiamine_transporter ABC-type thiamine tr | 100.0 | |
| PRK13638 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11231 | 255 | fecE iron-dicitrate transporter ATP-binding subuni | 100.0 | |
| PRK13639 | 275 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR02769 | 265 | nickel_nikE nickel import ATP-binding protein NikE | 100.0 | |
| PRK09984 | 262 | phosphonate/organophosphate ester transporter subu | 100.0 | |
| PRK11308 | 327 | dppF dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| cd03233 | 202 | ABC_PDR_domain1 The pleiotropic drug resistance (P | 100.0 | |
| PRK10575 | 265 | iron-hydroxamate transporter ATP-binding subunit; | 100.0 | |
| PRK13649 | 280 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK10744 | 260 | pstB phosphate transporter ATP-binding protein; Pr | 100.0 | |
| TIGR03410 | 230 | urea_trans_UrtE urea ABC transporter, ATP-binding | 100.0 | |
| PRK14242 | 253 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14241 | 258 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK10253 | 265 | iron-enterobactin transporter ATP-binding protein; | 100.0 | |
| PRK14245 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR03873 | 256 | F420-0_ABC_ATP proposed F420-0 ABC transporter, AT | 100.0 | |
| PRK13632 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14256 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03232 | 192 | ABC_PDR_domain2 The pleiotropic drug resistance-li | 100.0 | |
| PRK10584 | 228 | putative ABC transporter ATP-binding protein YbbA; | 100.0 | |
| TIGR01277 | 213 | thiQ thiamine ABC transporter, ATP-binding protein | 100.0 | |
| PRK13549 | 506 | xylose transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK15093 | 330 | antimicrobial peptide ABC transporter ATP-binding | 100.0 | |
| cd03267 | 236 | ABC_NatA_like Similar in sequence to NatA, this is | 100.0 | |
| PRK13640 | 282 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR00968 | 237 | 3a0106s01 sulfate ABC transporter, ATP-binding pro | 100.0 | |
| cd03300 | 232 | ABC_PotA_N PotA is an ABC-type transporter and the | 100.0 | |
| PRK13648 | 269 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14235 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| COG4987 | 573 | CydC ABC-type transport system involved in cytochr | 100.0 | |
| PRK13547 | 272 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| TIGR00958 | 711 | 3a01208 Conjugate Transporter-2 (CT2) Family prote | 100.0 | |
| PRK13633 | 280 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK11144 | 352 | modC molybdate transporter ATP-binding protein; Pr | 100.0 | |
| PRK14269 | 246 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14237 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14259 | 269 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14250 | 241 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR02142 | 354 | modC_ABC molybdenum ABC transporter, ATP-binding p | 100.0 | |
| PRK13645 | 289 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR01184 | 230 | ntrCD nitrate transport ATP-binding subunits C and | 100.0 | |
| TIGR03797 | 686 | NHPM_micro_ABC2 NHPM bacteriocin system ABC transp | 100.0 | |
| COG4598 | 256 | HisP ABC-type histidine transport system, ATPase c | 100.0 | |
| PRK10771 | 232 | thiQ thiamine transporter ATP-binding subunit; Pro | 100.0 | |
| cd03213 | 194 | ABCG_EPDR ABCG transporters are involved in eye pi | 100.0 | |
| cd03299 | 235 | ABC_ModC_like Archeal protein closely related to M | 100.0 | |
| PRK11174 | 588 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| TIGR03608 | 206 | L_ocin_972_ABC putative bacteriocin export ABC tra | 100.0 | |
| PRK14274 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14270 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK15112 | 267 | antimicrobial peptide ABC system ATP-binding prote | 100.0 | |
| cd03297 | 214 | ABC_ModC_molybdenum_transporter ModC is an ABC-typ | 100.0 | |
| PRK14239 | 252 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14240 | 250 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK13642 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14260 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10762 | 501 | D-ribose transporter ATP binding protein; Provisio | 100.0 | |
| PRK14257 | 329 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR01193 | 708 | bacteriocin_ABC ABC-type bacteriocin transporter. | 100.0 | |
| COG1129 | 500 | MglA ABC-type sugar transport system, ATPase compo | 100.0 | |
| PRK14262 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14244 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG1132 | 567 | MdlB ABC-type multidrug transport system, ATPase a | 100.0 | |
| PRK14253 | 249 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14236 | 272 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14272 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11701 | 258 | phnK phosphonate C-P lyase system protein PhnK; Pr | 100.0 | |
| PRK14258 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR02982 | 220 | heterocyst_DevA ABC exporter ATP-binding subunit, | 100.0 | |
| PRK09700 | 510 | D-allose transporter ATP-binding protein; Provisio | 100.0 | |
| TIGR03796 | 710 | NHPM_micro_ABC1 NHPM bacteriocin system ABC transp | 100.0 | |
| PRK14271 | 276 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13543 | 214 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| PRK14249 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10418 | 254 | nikD nickel transporter ATP-binding protein NikD; | 100.0 | |
| TIGR02770 | 230 | nickel_nikD nickel import ATP-binding protein NikD | 100.0 | |
| COG4161 | 242 | ArtP ABC-type arginine transport system, ATPase co | 100.0 | |
| TIGR03375 | 694 | type_I_sec_LssB type I secretion system ATPase, Ls | 100.0 | |
| PRK10419 | 268 | nikE nickel transporter ATP-binding protein NikE; | 100.0 | |
| PRK14275 | 286 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK15056 | 272 | manganese/iron transporter ATP-binding protein; Pr | 100.0 | |
| PRK11160 | 574 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| PRK14251 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14261 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR02633 | 500 | xylG D-xylose ABC transporter, ATP-binding protein | 100.0 | |
| cd03220 | 224 | ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transpo | 100.0 | |
| PRK14248 | 268 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14265 | 274 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10247 | 225 | putative ABC transporter ATP-binding protein YbbL; | 100.0 | |
| PRK15439 | 510 | autoinducer 2 ABC transporter ATP-binding protein | 100.0 | |
| PRK13538 | 204 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| PRK14254 | 285 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14255 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03231 | 201 | ABC_CcmA_heme_exporter CcmA, the ATP-binding compo | 100.0 | |
| cd03252 | 237 | ABCC_Hemolysin The ABC-transporter hemolysin B is | 100.0 | |
| PRK14263 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| CHL00131 | 252 | ycf16 sulfate ABC transporter protein; Validated | 100.0 | |
| COG1123 | 539 | ATPase components of various ABC-type transport sy | 100.0 | |
| PRK11176 | 582 | lipid transporter ATP-binding/permease protein; Pr | 100.0 | |
| TIGR01846 | 694 | type_I_sec_HlyB type I secretion system ABC transp | 100.0 | |
| PRK14243 | 264 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK10790 | 592 | putative multidrug transporter membrane\ATP-bindin | 100.0 | |
| PRK14238 | 271 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK11288 | 501 | araG L-arabinose transporter ATP-binding protein; | 100.0 | |
| KOG0056 | 790 | consensus Heavy metal exporter HMT1, ABC superfami | 100.0 | |
| PRK10982 | 491 | galactose/methyl galaxtoside transporter ATP-bindi | 100.0 | |
| PRK14246 | 257 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR02323 | 253 | CP_lyasePhnK phosphonate C-P lyase system protein | 100.0 | |
| PRK13546 | 264 | teichoic acids export protein ATP-binding subunit; | 100.0 | |
| COG4618 | 580 | ArpD ABC-type protease/lipase transport system, AT | 100.0 | |
| cd03230 | 173 | ABC_DR_subfamily_A This family of ATP-binding prot | 100.0 | |
| cd03251 | 234 | ABCC_MsbA MsbA is an essential ABC transporter, cl | 100.0 | |
| PRK14266 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03245 | 220 | ABCC_bacteriocin_exporters ABC-type bacteriocin ex | 100.0 | |
| COG4604 | 252 | CeuD ABC-type enterochelin transport system, ATPas | 100.0 | |
| PRK13539 | 207 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| COG1129 | 500 | MglA ABC-type sugar transport system, ATPase compo | 100.0 | |
| PRK09580 | 248 | sufC cysteine desulfurase ATPase component; Review | 100.0 | |
| TIGR01166 | 190 | cbiO cobalt transport protein ATP-binding subunit. | 100.0 | |
| cd03289 | 275 | ABCC_CFTR2 The CFTR subfamily domain 2. The cystic | 100.0 | |
| PRK03695 | 248 | vitamin B12-transporter ATPase; Provisional | 100.0 | |
| TIGR01189 | 198 | ccmA heme ABC exporter, ATP-binding protein CcmA. | 100.0 | |
| cd03249 | 238 | ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) | 100.0 | |
| cd03254 | 229 | ABCC_Glucan_exporter_like Glucan exporter ATP-bind | 100.0 | |
| PRK14252 | 265 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR03269 | 520 | met_CoM_red_A2 methyl coenzyme M reductase system, | 100.0 | |
| TIGR02324 | 224 | CP_lyasePhnL phosphonate C-P lyase system protein | 100.0 | |
| cd03229 | 178 | ABC_Class3 This class is comprised of all BPD (Bin | 100.0 | |
| PRK14264 | 305 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG4148 | 352 | ModC ABC-type molybdate transport system, ATPase c | 100.0 | |
| TIGR01842 | 544 | type_I_sec_PrtD type I secretion system ABC transp | 100.0 | |
| PRK10261 | 623 | glutathione transporter ATP-binding protein; Provi | 100.0 | |
| PRK00635 | 1809 | excinuclease ABC subunit A; Provisional | 100.0 | |
| PRK09544 | 251 | znuC high-affinity zinc transporter ATPase; Review | 100.0 | |
| TIGR02203 | 571 | MsbA_lipidA lipid A export permease/ATP-binding pr | 100.0 | |
| PTZ00265 | 1466 | multidrug resistance protein (mdr1); Provisional | 100.0 | |
| PRK13540 | 200 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| PRK13545 | 549 | tagH teichoic acids export protein ATP-binding sub | 100.0 | |
| cd03215 | 182 | ABC_Carb_Monos_II This family represents domain II | 100.0 | |
| cd03244 | 221 | ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. | 100.0 | |
| COG0488 | 530 | Uup ATPase components of ABC transporters with dup | 100.0 | |
| cd03217 | 200 | ABC_FeS_Assembly ABC-type transport system involve | 100.0 | |
| cd03253 | 236 | ABCC_ATM1_transporter ATM1 is an ABC transporter t | 100.0 | |
| PRK15134 | 529 | microcin C ABC transporter ATP-binding protein Yej | 100.0 | |
| cd03246 | 173 | ABCC_Protease_Secretion This family represents the | 100.0 | |
| cd03248 | 226 | ABCC_TAP TAP, the Transporter Associated with Anti | 100.0 | |
| PRK13657 | 588 | cyclic beta-1,2-glucan ABC transporter; Provisiona | 100.0 | |
| PRK00349 | 943 | uvrA excinuclease ABC subunit A; Reviewed | 100.0 | |
| cd03247 | 178 | ABCC_cytochrome_bd The CYD subfamily implicated in | 100.0 | |
| TIGR03771 | 223 | anch_rpt_ABC anchored repeat-type ABC transporter, | 100.0 | |
| TIGR02868 | 529 | CydC thiol reductant ABC exporter, CydC subunit. T | 100.0 | |
| cd03369 | 207 | ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-ty | 100.0 | |
| COG4619 | 223 | ABC-type uncharacterized transport system, ATPase | 100.0 | |
| COG0396 | 251 | sufC Cysteine desulfurase activator ATPase [Posttr | 100.0 | |
| PRK10789 | 569 | putative multidrug transporter membrane\ATP-bindin | 100.0 | |
| TIGR01192 | 585 | chvA glucan exporter ATP-binding protein. This mod | 100.0 | |
| COG3845 | 501 | ABC-type uncharacterized transport systems, ATPase | 100.0 | |
| cd03223 | 166 | ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass | 100.0 | |
| cd03214 | 180 | ABC_Iron-Siderophores_B12_Hemin ABC transporters, | 100.0 | |
| COG1119 | 257 | ModF ABC-type molybdenum transport system, ATPase | 100.0 | |
| PRK10938 | 490 | putative molybdenum transport ATP-binding protein | 100.0 | |
| cd03288 | 257 | ABCC_SUR2 The SUR domain 2. The sulfonylurea recep | 100.0 | |
| TIGR02857 | 529 | CydD thiol reductant ABC exporter, CydD subunit. U | 100.0 | |
| cd03216 | 163 | ABC_Carb_Monos_I This family represents the domain | 100.0 | |
| PRK13541 | 195 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| COG4674 | 249 | Uncharacterized ABC-type transport system, ATPase | 100.0 | |
| TIGR01187 | 325 | potA spermidine/putrescine ABC transporter ATP-bin | 100.0 | |
| TIGR02204 | 576 | MsbA_rel ABC transporter, permease/ATP-binding pro | 100.0 | |
| cd03250 | 204 | ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. | 100.0 | |
| PRK10522 | 547 | multidrug transporter membrane component/ATP-bindi | 100.0 | |
| TIGR00630 | 924 | uvra excinuclease ABC, A subunit. This family is b | 100.0 | |
| COG4586 | 325 | ABC-type uncharacterized transport system, ATPase | 100.0 | |
| cd03228 | 171 | ABCC_MRP_Like The MRP (Mutidrug Resistance Protein | 100.0 | |
| cd03290 | 218 | ABCC_SUR1_N The SUR domain 1. The sulfonylurea rec | 100.0 | |
| cd03237 | 246 | ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 o | 100.0 | |
| PRK10535 | 648 | macrolide transporter ATP-binding /permease protei | 100.0 | |
| cd03291 | 282 | ABCC_CFTR1 The CFTR subfamily domain 1. The cystic | 100.0 | |
| COG5265 | 497 | ATM1 ABC-type transport system involved in Fe-S cl | 100.0 | |
| KOG0059 | 885 | consensus Lipid exporter ABCA1 and related protein | 100.0 | |
| PRK15177 | 213 | Vi polysaccharide export ATP-binding protein VexC; | 100.0 | |
| TIGR01194 | 555 | cyc_pep_trnsptr cyclic peptide transporter. This m | 100.0 | |
| COG4608 | 268 | AppF ABC-type oligopeptide transport system, ATPas | 100.0 | |
| PRK15064 | 530 | ABC transporter ATP-binding protein; Provisional | 100.0 | |
| PRK11819 | 556 | putative ABC transporter ATP-binding protein; Revi | 100.0 | |
| COG4136 | 213 | ABC-type uncharacterized transport system, ATPase | 99.98 | |
| COG1101 | 263 | PhnK ABC-type uncharacterized transport system, AT | 99.98 | |
| cd03236 | 255 | ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 o | 99.98 | |
| COG4172 | 534 | ABC-type uncharacterized transport system, duplica | 99.97 | |
| TIGR03719 | 552 | ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa | 99.97 | |
| COG3845 | 501 | ABC-type uncharacterized transport systems, ATPase | 99.97 | |
| cd03222 | 177 | ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi | 99.97 | |
| cd03238 | 176 | ABC_UvrA The excision repair protein UvrA; Nucleot | 99.97 | |
| TIGR00954 | 659 | 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FA | 99.97 | |
| COG1134 | 249 | TagH ABC-type polysaccharide/polyol phosphate tran | 99.97 | |
| cd03221 | 144 | ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is | 99.97 | |
| KOG0927 | 614 | consensus Predicted transporter (ABC superfamily) | 99.97 | |
| PLN03232 | 1495 | ABC transporter C family member; Provisional | 99.97 | |
| PLN03130 | 1622 | ABC transporter C family member; Provisional | 99.97 | |
| COG4133 | 209 | CcmA ABC-type transport system involved in cytochr | 99.97 | |
| COG4167 | 267 | SapF ABC-type antimicrobial peptide transport syst | 99.97 | |
| PRK10636 | 638 | putative ABC transporter ATP-binding protein; Prov | 99.97 | |
| cd00267 | 157 | ABC_ATPase ABC (ATP-binding cassette) transporter | 99.96 | |
| PRK13409 | 590 | putative ATPase RIL; Provisional | 99.96 | |
| PRK11147 | 635 | ABC transporter ATPase component; Reviewed | 99.96 | |
| TIGR00957 | 1522 | MRP_assoc_pro multi drug resistance-associated pro | 99.96 | |
| TIGR01271 | 1490 | CFTR_protein cystic fibrosis transmembrane conduct | 99.96 | |
| COG4107 | 258 | PhnK ABC-type phosphonate transport system, ATPase | 99.96 | |
| KOG0058 | 716 | consensus Peptide exporter, ABC superfamily [Intra | 99.96 | |
| cd03270 | 226 | ABC_UvrA_I The excision repair protein UvrA domain | 99.96 | |
| COG0488 | 530 | Uup ATPase components of ABC transporters with dup | 99.95 | |
| PLN03073 | 718 | ABC transporter F family; Provisional | 99.95 | |
| PTZ00243 | 1560 | ABC transporter; Provisional | 99.95 | |
| cd03271 | 261 | ABC_UvrA_II The excision repair protein UvrA domai | 99.95 | |
| KOG0054 | 1381 | consensus Multidrug resistance-associated protein/ | 99.95 | |
| COG4778 | 235 | PhnL ABC-type phosphonate transport system, ATPase | 99.95 | |
| PF00005 | 137 | ABC_tran: ABC transporter This structure is on hol | 99.95 | |
| cd03278 | 197 | ABC_SMC_barmotin Barmotin is a tight junction-asso | 99.94 | |
| COG1245 | 591 | Predicted ATPase, RNase L inhibitor (RLI) homolog | 99.94 | |
| COG4138 | 248 | BtuD ABC-type cobalamin transport system, ATPase c | 99.93 | |
| COG5265 | 497 | ATM1 ABC-type transport system involved in Fe-S cl | 99.93 | |
| KOG0056 | 790 | consensus Heavy metal exporter HMT1, ABC superfami | 99.93 | |
| PRK00635 | 1809 | excinuclease ABC subunit A; Provisional | 99.92 | |
| COG1135 | 339 | AbcC ABC-type metal ion transport system, ATPase c | 99.92 | |
| cd03272 | 243 | ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC protein | 99.91 | |
| COG2274 | 709 | SunT ABC-type bacteriocin/lantibiotic exporters, c | 99.91 | |
| cd03240 | 204 | ABC_Rad50 The catalytic domains of Rad50 are simil | 99.91 | |
| cd03274 | 212 | ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC protein | 99.9 | |
| COG1126 | 240 | GlnQ ABC-type polar amino acid transport system, A | 99.9 | |
| KOG0062 | 582 | consensus ATPase component of ABC transporters wit | 99.9 | |
| KOG0057 | 591 | consensus Mitochondrial Fe/S cluster exporter, ABC | 99.9 | |
| COG4615 | 546 | PvdE ABC-type siderophore export system, fused ATP | 99.9 | |
| cd03279 | 213 | ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complex | 99.9 | |
| COG4178 | 604 | ABC-type uncharacterized transport system, permeas | 99.9 | |
| cd03273 | 251 | ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC protein | 99.9 | |
| COG0178 | 935 | UvrA Excinuclease ATPase subunit [DNA replication, | 99.89 | |
| COG1132 | 567 | MdlB ABC-type multidrug transport system, ATPase a | 99.89 | |
| COG1131 | 293 | CcmA ABC-type multidrug transport system, ATPase c | 99.87 | |
| COG4555 | 245 | NatA ABC-type Na+ transport system, ATPase compone | 99.86 | |
| PRK11174 | 588 | cysteine/glutathione ABC transporter membrane/ATP- | 99.86 | |
| COG4988 | 559 | CydD ABC-type transport system involved in cytochr | 99.85 | |
| COG4170 | 330 | SapD ABC-type antimicrobial peptide transport syst | 99.85 | |
| KOG0927 | 614 | consensus Predicted transporter (ABC superfamily) | 99.85 | |
| COG1125 | 309 | OpuBA ABC-type proline/glycine betaine transport s | 99.84 | |
| cd03276 | 198 | ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC protein | 99.84 | |
| TIGR03375 | 694 | type_I_sec_LssB type I secretion system ATPase, Ls | 99.84 | |
| TIGR03797 | 686 | NHPM_micro_ABC2 NHPM bacteriocin system ABC transp | 99.84 | |
| TIGR03796 | 710 | NHPM_micro_ABC1 NHPM bacteriocin system ABC transp | 99.84 | |
| PRK10790 | 592 | putative multidrug transporter membrane\ATP-bindin | 99.83 | |
| PRK11160 | 574 | cysteine/glutathione ABC transporter membrane/ATP- | 99.83 | |
| KOG0060 | 659 | consensus Long-chain acyl-CoA transporter, ABC sup | 99.83 | |
| COG1122 | 235 | CbiO ABC-type cobalt transport system, ATPase comp | 99.83 | |
| TIGR02314 | 343 | ABC_MetN D-methionine ABC transporter, ATP-binding | 99.83 | |
| TIGR01193 | 708 | bacteriocin_ABC ABC-type bacteriocin transporter. | 99.83 | |
| PRK11176 | 582 | lipid transporter ATP-binding/permease protein; Pr | 99.83 | |
| COG1120 | 258 | FepC ABC-type cobalamin/Fe3+-siderophores transpor | 99.83 | |
| TIGR00958 | 711 | 3a01208 Conjugate Transporter-2 (CT2) Family prote | 99.83 | |
| cd03275 | 247 | ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC protein | 99.83 | |
| KOG0066 | 807 | consensus eIF2-interacting protein ABC50 (ABC supe | 99.82 | |
| COG3638 | 258 | ABC-type phosphate/phosphonate transport system, A | 99.82 | |
| COG4987 | 573 | CydC ABC-type transport system involved in cytochr | 99.82 | |
| PRK13537 | 306 | nodulation ABC transporter NodI; Provisional | 99.82 | |
| COG1124 | 252 | DppF ABC-type dipeptide/oligopeptide/nickel transp | 99.82 | |
| KOG2355 | 291 | consensus Predicted ABC-type transport, ATPase com | 99.81 | |
| COG1127 | 263 | Ttg2A ABC-type transport system involved in resist | 99.81 | |
| COG1136 | 226 | SalX ABC-type antimicrobial peptide transport syst | 99.81 | |
| TIGR01188 | 302 | drrA daunorubicin resistance ABC transporter ATP-b | 99.81 | |
| COG3840 | 231 | ThiQ ABC-type thiamine transport system, ATPase co | 99.81 | |
| PF01061 | 210 | ABC2_membrane: ABC-2 type transporter; InterPro: I | 99.8 | |
| PRK11650 | 356 | ugpC glycerol-3-phosphate transporter ATP-binding | 99.8 | |
| TIGR01846 | 694 | type_I_sec_HlyB type I secretion system ABC transp | 99.8 | |
| TIGR03265 | 353 | PhnT2 putative 2-aminoethylphosphonate ABC transpo | 99.8 | |
| TIGR03258 | 362 | PhnT 2-aminoethylphosphonate ABC transport system, | 99.8 | |
| KOG0062 | 582 | consensus ATPase component of ABC transporters wit | 99.79 | |
| TIGR01186 | 363 | proV glycine betaine/L-proline transport ATP bindi | 99.79 | |
| cd03261 | 235 | ABC_Org_Solvent_Resistant ABC (ATP-binding cassett | 99.79 | |
| COG0444 | 316 | DppD ABC-type dipeptide/oligopeptide/nickel transp | 99.79 | |
| PRK13637 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.79 | |
| PRK13643 | 288 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.79 | |
| PRK13634 | 290 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.79 | |
| PRK13536 | 340 | nodulation factor exporter subunit NodI; Provision | 99.79 | |
| PRK11432 | 351 | fbpC ferric transporter ATP-binding subunit; Provi | 99.79 | |
| TIGR02203 | 571 | MsbA_lipidA lipid A export permease/ATP-binding pr | 99.79 | |
| COG4161 | 242 | ArtP ABC-type arginine transport system, ATPase co | 99.79 | |
| PRK13657 | 588 | cyclic beta-1,2-glucan ABC transporter; Provisiona | 99.79 | |
| PRK11153 | 343 | metN DL-methionine transporter ATP-binding subunit | 99.79 | |
| PRK09473 | 330 | oppD oligopeptide transporter ATP-binding componen | 99.79 | |
| COG1121 | 254 | ZnuC ABC-type Mn/Zn transport systems, ATPase comp | 99.78 | |
| COG4618 | 580 | ArpD ABC-type protease/lipase transport system, AT | 99.78 | |
| TIGR01842 | 544 | type_I_sec_PrtD type I secretion system ABC transp | 99.78 | |
| TIGR01288 | 303 | nodI ATP-binding ABC transporter family nodulation | 99.78 | |
| PRK11607 | 377 | potG putrescine transporter ATP-binding subunit; P | 99.78 | |
| PRK10851 | 353 | sulfate/thiosulfate transporter subunit; Provision | 99.78 | |
| PRK09452 | 375 | potA putrescine/spermidine ABC transporter ATPase | 99.78 | |
| PRK11022 | 326 | dppD dipeptide transporter ATP-binding subunit; Pr | 99.78 | |
| PRK11000 | 369 | maltose/maltodextrin transporter ATP-binding prote | 99.78 | |
| cd03256 | 241 | ABC_PhnC_transporter ABC-type phosphate/phosphonat | 99.78 | |
| cd03294 | 269 | ABC_Pro_Gly_Bertaine This family comprises the gly | 99.78 | |
| PRK11308 | 327 | dppF dipeptide transporter ATP-binding subunit; Pr | 99.77 | |
| PRK10789 | 569 | putative multidrug transporter membrane\ATP-bindin | 99.77 | |
| COG1117 | 253 | PstB ABC-type phosphate transport system, ATPase c | 99.77 | |
| cd03296 | 239 | ABC_CysA_sulfate_importer Part of the ABC transpor | 99.77 | |
| PRK15079 | 331 | oligopeptide ABC transporter ATP-binding protein O | 99.77 | |
| COG3839 | 338 | MalK ABC-type sugar transport systems, ATPase comp | 99.77 | |
| TIGR03522 | 301 | GldA_ABC_ATP gliding motility-associated ABC trans | 99.77 | |
| TIGR01187 | 325 | potA spermidine/putrescine ABC transporter ATP-bin | 99.77 | |
| TIGR02315 | 243 | ABC_phnC phosphonate ABC transporter, ATP-binding | 99.77 | |
| cd03265 | 220 | ABC_DrrA DrrA is the ATP-binding protein component | 99.77 | |
| PRK13631 | 320 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.77 | |
| COG1116 | 248 | TauB ABC-type nitrate/sulfonate/bicarbonate transp | 99.77 | |
| cd03219 | 236 | ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans | 99.77 | |
| PRK13646 | 286 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.77 | |
| PRK13650 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.77 | |
| PRK13636 | 283 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.77 | |
| cd03259 | 213 | ABC_Carb_Solutes_like ABC Carbohydrate and Solute | 99.77 | |
| TIGR03415 | 382 | ABC_choXWV_ATP choline ABC transporter, ATP-bindin | 99.76 | |
| PRK13647 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.76 | |
| cd03239 | 178 | ABC_SMC_head The structural maintenance of chromos | 99.76 | |
| TIGR01184 | 230 | ntrCD nitrate transport ATP-binding subunits C and | 99.76 | |
| PRK10070 | 400 | glycine betaine transporter ATP-binding subunit; P | 99.76 | |
| cd03260 | 227 | ABC_PstB_phosphate_transporter Phosphate uptake is | 99.76 | |
| COG4175 | 386 | ProV ABC-type proline/glycine betaine transport sy | 99.76 | |
| TIGR02770 | 230 | nickel_nikD nickel import ATP-binding protein NikD | 99.76 | |
| cd03218 | 232 | ABC_YhbG The ABC transporters belonging to the Yhb | 99.76 | |
| COG1245 | 591 | Predicted ATPase, RNase L inhibitor (RLI) homolog | 99.76 | |
| cd03301 | 213 | ABC_MalK_N The N-terminal ATPase domain of the mal | 99.76 | |
| cd03293 | 220 | ABC_NrtD_SsuB_transporters NrtD and SsuB are the A | 99.76 | |
| cd03258 | 233 | ABC_MetN_methionine_transporter MetN (also known a | 99.76 | |
| PRK13633 | 280 | cobalt transporter ATP-binding subunit; Provisiona | 99.76 | |
| TIGR01192 | 585 | chvA glucan exporter ATP-binding protein. This mod | 99.76 | |
| PRK13652 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.76 | |
| TIGR03864 | 236 | PQQ_ABC_ATP ABC transporter, ATP-binding subunit, | 99.76 | |
| PRK15093 | 330 | antimicrobial peptide ABC transporter ATP-binding | 99.76 | |
| PRK09536 | 402 | btuD corrinoid ABC transporter ATPase; Reviewed | 99.76 | |
| PRK13648 | 269 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.76 | |
| cd03280 | 200 | ABC_MutS2 MutS2 homologs in bacteria and eukaryote | 99.76 |
| >KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-187 Score=1690.95 Aligned_cols=1119 Identities=52% Similarity=0.926 Sum_probs=1024.2
Q ss_pred HHHHHHHHHhCCcccccccccCCcccccCccccchhhHHHHHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHhHhCCCE
Q 000979 45 VITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGT 124 (1202)
Q Consensus 45 ~~v~~il~~lgL~~~~dT~VG~~~~~gLSGGQKqRvsIAraLv~~P~ILlLDEpTSGLDs~sa~~vv~~L~~~a~~~~tT 124 (1202)
+++|.++++|||+||+||+|||...||+||||||||+||++++.+|+++|+||+|+||||.++.+++++||++++..++|
T Consensus 234 ~~~d~~lkilGL~~~~dT~VGnd~~RGvSGGerKRvsi~E~~v~~~~~~~~De~t~GLDSsTal~iik~lr~~a~~~~~t 313 (1391)
T KOG0065|consen 234 AMTDYLLKILGLDHCADTLVGNDMVRGVSGGERKRVSIGEMLVGPASILFWDEITRGLDSSTAFQIIKALRQLAHITGAT 313 (1391)
T ss_pred HHHHHHHHHhCchhhccceecccccccccCcccceeeeeeeeecCcceeeeecccccccHHHHHHHHHHHHHHHhhhcce
Confidence 37899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEecCCChHHHhhhcceEEecCCcEEEEcCcchHHHHHHhCCCCCCCCCChhhHHHHhcCchhhhhhhhhcCCCCccC
Q 000979 125 AVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLEFFASMGFRCPKRKGVADFLQEVTSRKDQRQYWAHKEKPYRFV 204 (1202)
Q Consensus 125 iIiaihQp~~s~~~~fD~IvvL~~G~vvy~G~~~el~~~F~~lG~~~p~~~n~ad~l~~v~~~~~~~~~~~~~~~~~~~~ 204 (1202)
.+++|+||+++++.+||+|++|++|++||+||.+++++||+++||.||+++++|||++++++..++.++|..++.++...
T Consensus 314 ~~vsi~Q~s~~~~~lFD~v~lL~eG~~iy~Gp~d~~~~yFe~~Gf~cP~r~~~ADfLt~vts~k~~~~~~~~~~~~~~~~ 393 (1391)
T KOG0065|consen 314 ALVSILQPSPEIYDLFDDVILLSEGYQIYQGPRDEVLPYFEDMGFKCPPRKGTADFLTEVTSKKDQEQYWNKRSKPYPYT 393 (1391)
T ss_pred EEEEeccCChHHHHhhhheeeeeccceEEeccHHHHHHHHHhcCccCCCccCHHHHHHHhhcCccccccccccCCCcccC
Confidence 99999999999999999999999999999999999999999999999999999999999999888888887777777777
Q ss_pred CHHHHHHHHHhchhhhhhhhhhcCCCCcccccccccccccccCcHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHH
Q 000979 205 TVQEFAEAFQSFHVGQKISDELRTPFDKSKSHRAALTTETYGVGKRELLKANISRELLLMKRNSFVYIFKLIQIAFVAVV 284 (1202)
Q Consensus 205 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~r~~~~~~~~~~~~ii~~~~ 284 (1202)
+..++.+.|.+++.+.+...+.....++.+.++.+.....|..+.|+|.+.++.|.+..++||..++....++.++++++
T Consensus 394 ~~~ef~~~~~~s~~~~~l~~~l~~~~~~~k~~~~al~s~~y~v~~~~qvk~c~~R~f~l~k~n~~~~~~~~~~~~i~ali 473 (1391)
T KOG0065|consen 394 SVSEFAEYFLNSEDYAKLKKELSKPYDKSKKHKAALVSSKYSVPYWEQVKACTIREFLLMKRNYFYYVFKTVQLVIQALI 473 (1391)
T ss_pred CHHHHHHHHhcchhhHHHHHHhcchhhhhhccchhhcCCceeccHHHHHHHHHHHHHHHHhCCceEEEhHHHHHHHHHHH
Confidence 78999999999999999999888887777777777788889999999999999999999999999999999999999999
Q ss_pred HHHHHhcccCCCCccccccchhhHHHHHHHHHHHhhHHHHHHhhhcchhHHHhhcCCCCChhhHHHHHHHHhhhHHHHHH
Q 000979 285 YMTLFLRTKMHKDTVTDGGIFAGATFFAITMVNFNGFSEISMTIAKLPVFYKQRDFRFFPPWAYAIPSWILKIPVSFLEV 364 (1202)
Q Consensus 285 ~g~~f~~~~~~~~~~~~~~~~~g~~f~~~~~~~~~~~~~~~~~~~~~~v~~rer~~~~y~~~~y~la~~l~~~p~~~~~~ 364 (1202)
.|++|++.++ .+..++..+.|++||++.+.++.++.++...++++|+++|||...+|+||++.++..++++|..++..
T Consensus 474 ~gslF~~~~~--~t~~~~~~~~~~lffsll~~~f~~laEi~~~~~~~pv~~Khr~~~fY~p~A~al~s~l~~~P~~~i~~ 551 (1391)
T KOG0065|consen 474 TGSLFYRTPM--STTSGGYSRGGALFFALLFNLFNGLAEIALTFQRLPVFYKHRDLSFYPPWAEALASTLLKIPSSFIES 551 (1391)
T ss_pred HhhheeeccC--cccccchhhhhHHHHHHHHHHHHhHHHHHHHHhhcchHHHhhcccccChHHHHHHHHHHhCcHHHHHH
Confidence 9999999874 44555677899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhhcccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHHHhccccCCCCccchhh
Q 000979 365 AVWVFLSYYVVGYDSNAGRFFKQYALLLGVNQMASALFRFIAVTGRNMVVANTFGSFALLVLLSLGGFILSREDIKKWWK 444 (1202)
Q Consensus 365 ~i~~~i~y~~~gl~~~~~~f~~~~~~~~~~~~~~~~l~~~i~~~~~~~~ia~~i~~~~~~~~~l~~G~~i~~~~ip~~~~ 444 (1202)
.+|.+|.||+.|+.+++++||.+++.++..+.++.+++++++++++++.+|+.++++.++++.+++||++|...||+||+
T Consensus 552 ~vf~iI~Yfl~gl~~~A~rFF~~fL~lf~~~~~~s~lFr~ia~l~~t~~~An~~g~~~~L~i~m~~Gf~Ip~~~m~~W~~ 631 (1391)
T KOG0065|consen 552 VVFVIITYFLIGLKRNAGRFFIQFLFLFLCQFCMSGLFRFIASLSRTLSIANLIGGILLLVLFMYGGFVIPKKDMPPWFR 631 (1391)
T ss_pred HHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHhhHhHHHHHHHHHHcceeeeccccchHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhCHHHHHHHHHHHhhcCCCCcccccCC---------------CCcccHHHHHhhcCcc-----cccchhHHHHHHH
Q 000979 445 WAYWCSPLTYAQNAIVANEFLGHSWKKFTQD---------------SSETLGVQVLKSRGFF-----AHEYWYWLGLGAL 504 (1202)
Q Consensus 445 w~~~isp~~ya~~~~~~~e~~~~~~~~~~~~---------------~~~~~g~~~l~~~~~~-----~~~~~~~~~~~il 504 (1202)
|++|++|+.|++++++.|||.++++.|.+.+ ...+.|.++++..++. ....|+|++++++
T Consensus 632 Wi~yinPl~Y~fesl~~NEF~~~~~~c~p~gp~y~n~~~~~~~c~~~~~~~G~~~v~g~~~l~~~~~y~~~~~Wr~~gil 711 (1391)
T KOG0065|consen 632 WIAYINPLMYAFESLMSNEFHGRRWPCSPSGPAYDNISIENKVCAATGATLGNDYVSGRDYLKVQYQYEYKWYWRNFGIL 711 (1391)
T ss_pred HHHHHCHHHHHHHHHHHhhhhcccCCCCCCCCcccccccccccchhhccccCceEEecccccccccccccceeEeehhHH
Confidence 9999999999999999999999988876221 1244578888888777 5567899999999
Q ss_pred HHHHHHHHHHHHHHHhccCCCCCCccceeccccccccccccCCcccccccCCCCCCCCCCCCCCccccccccchhhhhhh
Q 000979 505 FGFVLLLNFAYTLALTFLDPFEKPRAVITEEIESNEQDDRIGGNVQLSTLGGSSNHNTRSGSTDDIRGQQSSSQSLSLAE 584 (1202)
Q Consensus 505 ~g~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 584 (1202)
+|+.++|.+++.+++.|+++....+.....+....+.... .+.. ....+..+
T Consensus 712 lgf~v~f~~~~~ia~~yl~p~~~~~~~l~~~~~~~~~~~~---------------------------~~~~-~~~~~~~~ 763 (1391)
T KOG0065|consen 712 LGFTVFFNFVFLIALEYLKPLKKSGAILVFKKGKEKKKVK---------------------------SAGS-SSEIEKLD 763 (1391)
T ss_pred HHHHHHHHHHHHHHHHhcCccccccceeeeccchhhhcch---------------------------hccc-cccccccc
Confidence 9999999999999999999888777666544332211100 0000 00000000
Q ss_pred hhccCCCCCCCccCCCCceeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhC
Q 000979 585 AEASRPKKKGMVLPFEPHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG 664 (1202)
Q Consensus 585 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g 664 (1202)
.... .+.+++..+..+..++++||.+-++++-..+.++ +++++|+|||+.++||.++||||+||||||||||+|+|
T Consensus 764 ~s~~-~~~~~~~~~~~~~~~~~~~V~~w~dl~~~~~~qG---~~~qLL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~ 839 (1391)
T KOG0065|consen 764 DSSH-QEKNKMVLPFTPLSLTFKDVFYWVDLPYEMPIQG---GTRQLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAG 839 (1391)
T ss_pred cccc-cccccccCCCccccccccceEEEEeCCccccccc---cceEhhhcCceEecCCceeehhcCCCCchHHHHHHHhc
Confidence 0000 0123444555566777888887777665555544 67899999999999999999999999999999999999
Q ss_pred CCCCceEEEEEEEcCccCCcccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccc
Q 000979 665 RKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLR 744 (1202)
Q Consensus 665 ~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~ 744 (1202)
|...|.++|+|.+||.|.++..++|.+|||.|+|.|.+.+||||.|.|+|.+|++.+.+.+++.+.||++++.++|.+++
T Consensus 840 R~t~G~I~Gdi~i~G~p~~q~tF~R~~GYvqQ~DiH~~~~TVrESL~fSA~LRlp~~v~~~ek~~yVe~Vi~lleL~~~~ 919 (1391)
T KOG0065|consen 840 RKTGGYIEGDILISGFPKDQETFARVSGYVEQQDIHSPELTVRESLRFSAALRLPKEVSDEEKYEYVEEVIELLELKEYA 919 (1391)
T ss_pred CcccceEEeEEEECCeeCchhhhccccceeecccccCcccchHHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHhCchhhh
Confidence 99999999999999999887889999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCCCCCCHHHHHHHHHHHHHhhCC-CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhc
Q 000979 745 QSLVGLPGVSGLSTEQRKRLTIAVELVANP-SIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAF 823 (1202)
Q Consensus 745 ~~~~~~~~~~~LSgGqrqRv~ia~aL~~~p-~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~ 823 (1202)
|.+||.|| +|||.+||||++||.+|+.|| .||||||||||||+.++..|++.+|+++++|+||+||+||||.++++.|
T Consensus 920 daiVG~~G-~GLs~eQRKrLTIgVELvA~P~~ilFLDEPTSGLDsqaA~~i~~~lrkla~tGqtIlCTIHQPS~~ife~F 998 (1391)
T KOG0065|consen 920 DALVGLPG-SGLSTEQRKRLTIGVELVANPSSILFLDEPTSGLDSQAAAIVMRFLRKLADTGQTILCTIHQPSIDIFEAF 998 (1391)
T ss_pred hhhccCCC-CCCCHHHhceeeEEEEEecCCceeEEecCCCCCccHHHHHHHHHHHHHHHhcCCeEEEEecCCcHHHHHHH
Confidence 99999999 899999999999999999999 8999999999999999999999999999999999999999999999999
Q ss_pred ceEEEEecCCEEEEEcCCCccchhHHHHHhhCCCcccCCCCCCccceEEEcccchhhhhhccchHHHhhhcHHHHHHHHH
Q 000979 824 DELFLMKRGGQEIYVGPLGRHSCHLISYFEAIPGVQKIKDGYNPATWMLEVSAASQELALGIDFTEHYKRSDLYRRNKAL 903 (1202)
Q Consensus 824 d~v~~l~~gG~~~~~G~~~~~~~~~~~~f~~~~~~~~~~~~~npa~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~ 903 (1202)
|++++|++||++||+||.++++..+++||++++|++ |++..|||||+||+++...+.....||++.|++|+++++++++
T Consensus 999 D~LLLLkrGGqtVY~G~lG~~s~~li~YFes~~~~~-~~~~~NPA~~mLevi~~~~~~~~~~D~a~~w~~S~e~k~~~e~ 1077 (1391)
T KOG0065|consen 999 DELLLLKRGGQTVYFGPLGENSSKLIEYFESIGGVK-CISDENPAEWMLEVIGAGAEASLSVDFAEIWKNSEEYKRNKEL 1077 (1391)
T ss_pred hHHHHHhcCCeEEEecCcccccHHHHHHHHhcCCcc-CCCCCChHHHHHhhcccccccccCccHHHHHhccHHHHHHHHH
Confidence 999999999999999999999999999999998874 6666699999999999877777788999999999999999999
Q ss_pred HHhhCCCCCC-CCCCCCCCccCchhHHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHHHHHHHhhcCCCCCCChhhHHH
Q 000979 904 IEDLSRPPPG-SKDLYFPTQFSQSSWIQFVACLWKQHWSYWRNPPYTAVRFFFTAFIALLFGSLFWDLGGRTKRNQDLFN 982 (1202)
Q Consensus 904 ~~~~~~~~~~-~~~~~~~~~~~~~~~~q~~~l~~R~~~~~~R~~~~~~~~~~~~~~~~l~~g~~f~~~~~~~~~~~~~~~ 982 (1202)
+++++++++. ..+...+++|+.|+|.|++.++||++..+||+|.++++|++..++.|+++|++||++++ +.++++|
T Consensus 1078 v~~l~~~~~~~~~~~~~~~~fa~s~~~Q~k~~l~Rq~~syWRsp~y~~ar~~~~i~~gl~iGf~F~~~g~---~~q~lqn 1154 (1391)
T KOG0065|consen 1078 VKELSQPPPGFSTDLEFKTRFAQSLWYQFKLCLWRQFLSYWRSPDYLMARFALTIVAGLFIGFTFWKVGH---NVQGLQN 1154 (1391)
T ss_pred HHHHhcCCccCCcccccccccchhHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhheeeeeecCC---cHHHHHH
Confidence 9999988887 66777778899999999999999999999999999999999999999999999999985 6899999
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhHHHhhHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhccccccccchHH
Q 000979 983 AMGSMFTAVLFLGVQYCSSVQPIVSVERTVFYREKAAGMYAGIPWALAQVMIEIPYILVQSVVYGAIVYAMIGFEWTAAK 1062 (1202)
Q Consensus 983 ~~g~lf~~~~~~~~~~~~~~~~~~~~er~v~~rE~~~~~Y~~~~y~~a~~~~~~p~~~~~~~~~~~i~Y~~~gl~~~~~~ 1062 (1202)
.+|++|+++++.+..++....+.+..||.+++||+++|+|++.+|++|++++|+|+.++++++|.+++|+++||.+++.+
T Consensus 1155 ~m~a~yma~v~~~~~~~~~~~~~v~~e~~y~~RE~~s~mYs~~~~~~aq~~vEiP~~l~~stl~~~~~Y~~iGF~~~a~~ 1234 (1391)
T KOG0065|consen 1155 AMGAAYMATVFSGPNNNQLQQPAVATERLYEYRERASNMYSWTPFALAQVLVEIPYNLLQSTLFFLITYYPIGFYWTASK 1234 (1391)
T ss_pred HHHHHHHHHHHhhhhhhhhhhhHHhhhhhheeeecccCcccHHHHHHHHHHHHHHHHHHHHHHhheeeeeeccchhhHHH
Confidence 99999999999988887777777888999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhccCCcCCCCcchHhHHhHhhcHHHHHHHHHHHHH
Q 000979 1063 FFWYIFFMYFTLLFFTFYGMMAVALTPNHHIAAIVSTLFYGLWNVFSGFIIPRPRIPIWWRWYYWANPIAWTLYGLVASQ 1142 (1202)
Q Consensus 1063 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~lf~G~~i~~~~ip~~~~w~~~~sp~~y~~~~l~~ne 1142 (1202)
|++|++.+++..++.+.+|+|+.+++||.++|+.+.+.++.++.+|||+++|++.||.||+|+||+||+.|.+++++..+
T Consensus 1235 ~~~f~~~~~~f~lYf~~~Gmm~~s~tPn~~~Aav~~s~~~s~~~~F~G~l~p~~~iP~fW~wmy~lsP~ty~l~gli~~~ 1314 (1391)
T KOG0065|consen 1235 FFWFLLFMFIFFLYFTTLGMMLVSLTPNLQTAAVIASLFFSFWNLFSGFLQPRSLIPKFWIWMYYLSPVTYTLEGLISSQ 1314 (1391)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHhcccccccccccceeeeeeecCcHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCcccccC---------CCCCHHHHHHhhcC----CCccchhHHHHHHHHHHHHHHHHHHHHHHhhccccC
Q 000979 1143 FGDMDDKKMD---------TGETVKQFLKDYFD----FKHDFLGVVAAVLVVFAVLFGFLFALGIKMFNFQRR 1202 (1202)
Q Consensus 1143 f~~~~~~~~~---------~~~~~~~~~~~~~~----~~~~~~~~~~~il~~~~~~~~~~~~~~l~~~~~~~~ 1202 (1202)
++|.+..|.. .|.++++|+...+| +.++.......+.++|.+++.+++.+.+||.+++||
T Consensus 1315 ~~d~~v~c~~~e~~~~~pp~g~tcge~m~~~~~~~~Gy~~n~~a~~~c~~c~y~v~~~~l~~f~~~y~~~wrn 1387 (1391)
T KOG0065|consen 1315 LGDVEVTCEDSEMNYFDPPSGQTCGEFMEDFFGEGTGYLHNPLATTACVYCAYTVADAFLAAFNIKYLNFWRN 1387 (1391)
T ss_pred hCCCceeeecCCccccCCCCCcCHHHHHHHHhccCcceeccCcceeEEEEeeeehHHHHHHHHHHHHHHHHHh
Confidence 9999888754 34589999999999 777777777778889999999999999999999886
|
|
| >PLN03140 ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-181 Score=1766.13 Aligned_cols=1193 Identities=61% Similarity=1.089 Sum_probs=1019.6
Q ss_pred hhHHHHHHHHHHHhcCCCCCCCHHHHHHHhhhhhhhhhHHHHHHHHHhCCcccccccccCCcccccCccccchhhHHHHH
Q 000979 7 PAEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMM 86 (1202)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~il~~lgL~~~~dT~VG~~~~~gLSGGQKqRvsIAraL 86 (1202)
+++++.++.++++..++.|+++++.+++++.....+.+..+|.+|+.+||++|+||.||++..++|||||||||+|||+|
T Consensus 272 ~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg~~~~rglSGGerkRVsia~aL 351 (1470)
T PLN03140 272 RYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMIRGISGGQKKRVTTGEMI 351 (1470)
T ss_pred cccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeCCccccCCCcccceeeeehhhh
Confidence 34455555556666667777788888888877777778889999999999999999999999999999999999999999
Q ss_pred hcCCeEeeeeCCCccccHHHHHHHHHHHHHHhHhCCCEEEEEecCCChHHHhhhcceEEecCCcEEEEcCcchHHHHHHh
Q 000979 87 VGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLEFFAS 166 (1202)
Q Consensus 87 v~~P~ILlLDEpTSGLDs~sa~~vv~~L~~~a~~~~tTiIiaihQp~~s~~~~fD~IvvL~~G~vvy~G~~~el~~~F~~ 166 (1202)
+++|++|||||||||||+.++.++++.|+++++..++|+|+++|||+++++++||+|++|++|+++|+||.+++++||++
T Consensus 352 ~~~p~vlllDEPTsGLDs~t~~~i~~~Lr~la~~~g~Tviis~Hqp~~~i~~lfD~vilL~~G~ivy~G~~~~~~~yF~~ 431 (1470)
T PLN03140 352 VGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHLTEATVLMSLLQPAPETFDLFDDIILLSEGQIVYQGPRDHILEFFES 431 (1470)
T ss_pred cCCCcEEEEeCCCcCccHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHHhheEEEeeCceEEEeCCHHHHHHHHHH
Confidence 99999999999999999999999999999998767899999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCChhhHHHHhcCchhhhhhhhhcCCCCccCCHHHHHHHHHhchhhhhhhhhhcCCCCccccccccccccccc
Q 000979 167 MGFRCPKRKGVADFLQEVTSRKDQRQYWAHKEKPYRFVTVQEFAEAFQSFHVGQKISDELRTPFDKSKSHRAALTTETYG 246 (1202)
Q Consensus 167 lG~~~p~~~n~ad~l~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (1202)
+||+||+++|||||++++++..+++++|.....|+...+.+++.+.|+++..++...++...+.++...++.......|.
T Consensus 432 lGf~cP~~~n~ADFl~~v~s~~~~~~~~~~~~~p~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~ 511 (1470)
T PLN03140 432 CGFKCPERKGTADFLQEVTSKKDQEQYWADRNKPYRYISVSEFAERFKSFHVGMQLENELSVPFDKSQSHKAALVFSKYS 511 (1470)
T ss_pred cCCCCCCCCChHHHHHHhcCchhhhhhhhccCCccccCCHHHHHHHHHhcHHHHHHHHHHhhhhhhhhcccccccCCCCc
Confidence 99999999999999999998876655554444444446788999999998877666555443332222222222334578
Q ss_pred CcHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHhcccCCCCccccccchhhHHHHHHHHHHHhhHHHHHH
Q 000979 247 VGKRELLKANISRELLLMKRNSFVYIFKLIQIAFVAVVYMTLFLRTKMHKDTVTDGGIFAGATFFAITMVNFNGFSEISM 326 (1202)
Q Consensus 247 ~~~~~~~~~~~~R~~~~~~r~~~~~~~~~~~~ii~~~~~g~~f~~~~~~~~~~~~~~~~~g~~f~~~~~~~~~~~~~~~~ 326 (1202)
.+.+.|.+.+++|.++..+||+..+..++++.+++|+++|++||+.+.+.....++..+.|++||++.+..+.++..+..
T Consensus 512 ~s~~~q~~~~~~R~~~~~~Rd~~~~~~r~~~~ii~ali~GsvF~~~~~~~~~~~~~~~~~g~lff~~l~~~~~~~~~l~~ 591 (1470)
T PLN03140 512 VPKMELLKACWDKEWLLMKRNAFVYVFKTVQIIIVAAIASTVFLRTEMHTRNEEDGALYIGALLFSMIINMFNGFAELAL 591 (1470)
T ss_pred CCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88899999999999999999999999999999999999999999987665555566778899999988888888888888
Q ss_pred hhhcchhHHHhhcCCCCChhhHHHHHHHHhhhHHHHHHHHHHhhhhhcccccCChhHHHHHHHHHHHHHHHHHHHHHHHH
Q 000979 327 TIAKLPVFYKQRDFRFFPPWAYAIPSWILKIPVSFLEVAVWVFLSYYVVGYDSNAGRFFKQYALLLGVNQMASALFRFIA 406 (1202)
Q Consensus 327 ~~~~~~v~~rer~~~~y~~~~y~la~~l~~~p~~~~~~~i~~~i~y~~~gl~~~~~~f~~~~~~~~~~~~~~~~l~~~i~ 406 (1202)
++.+||+++|||..++|++++|++++.++++|+.++.+++|++|+|||+|+++++++|+.+++.+++...++.+++.+++
T Consensus 592 ~~~~r~vf~ker~~~~Y~~~ay~la~~l~~iP~~~i~~~if~~I~Y~m~Gl~~~~~~Ff~f~l~~~l~~~~~~~l~~~i~ 671 (1470)
T PLN03140 592 MIQRLPVFYKQRDLLFHPPWTFTLPTFLLGIPISIIESVVWVVITYYSIGFAPEASRFFKQLLLVFLIQQMAAGIFRLIA 671 (1470)
T ss_pred HHhccchhHHhhhccCcCHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HccCChHHHHHHHHHHHHHHHHHhccccCCCCccchhhhhhhhCHHHHHHHHHHHhhcCCCCcccc-cCCCCcccHHHHH
Q 000979 407 VTGRNMVVANTFGSFALLVLLSLGGFILSREDIKKWWKWAYWCSPLTYAQNAIVANEFLGHSWKKF-TQDSSETLGVQVL 485 (1202)
Q Consensus 407 ~~~~~~~ia~~i~~~~~~~~~l~~G~~i~~~~ip~~~~w~~~isp~~ya~~~~~~~e~~~~~~~~~-~~~~~~~~g~~~l 485 (1202)
++++++.+|+.+++++++++++|+||+++.+.||+||+|++|+||+.|++++++.|||.+..+.+. +.......|.++|
T Consensus 672 a~~~~~~~A~~~~~~~~l~~~lf~Gf~i~~~~ip~w~~W~~yisp~~Ya~eal~~NEf~~~~~~~~~~~~~~~~~G~~~L 751 (1470)
T PLN03140 672 SVCRTMIIANTGGALVLLLVFLLGGFILPKGEIPNWWEWAYWVSPLSYGFNALAVNEMFAPRWMNKMASDNSTRLGTAVL 751 (1470)
T ss_pred HHcCcHHHHHHHHHHHHHHHHHHccceechHhCchHHHHHHHhCHHHHHHHHHHHHhccCccccCcccCCCCcccHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999988665422 2223456799999
Q ss_pred hhcCcccccchhHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCccceeccccccccccccCCcccccccCCCCCCCCCCC
Q 000979 486 KSRGFFAHEYWYWLGLGALFGFVLLLNFAYTLALTFLDPFEKPRAVITEEIESNEQDDRIGGNVQLSTLGGSSNHNTRSG 565 (1202)
Q Consensus 486 ~~~~~~~~~~~~~~~~~il~g~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 565 (1202)
+.+++...+.|+|.++++++++.++|.+++++++++.+...........+..................-...........
T Consensus 752 ~~~g~~~~~~~~w~~~~iL~~~~v~f~~l~~l~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 831 (1470)
T PLN03140 752 NIFDVFTDKNWYWIGVGALLGFTILFNVLFTLALTYLNPLGKKQAIISEETAEEMEGEEDSIPRSLSSADGNNTREVAIQ 831 (1470)
T ss_pred HhcCcCccccchhhhHHHHHHHHHHHHHHHHHHHHhcCccCCCCccccccchhhhhcccccccccccccccccccccccc
Confidence 99999887789999999999999999999999999987655443332111100000000000000000000000000000
Q ss_pred CCCcccccc-ccchhhhhhhhhccCCCCCCCccCCCCceeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeE
Q 000979 566 STDDIRGQQ-SSSQSLSLAEAEASRPKKKGMVLPFEPHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVL 644 (1202)
Q Consensus 566 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~ 644 (1202)
.|....... .... ............++..|..+..++|+||+|.++.+...+..+...+++++|+|||++++|||+
T Consensus 832 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~v~y~v~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gel 908 (1470)
T PLN03140 832 RMSNPEGLSKNRDS---SLEAANGVAPKRGMVLPFTPLAMSFDDVNYFVDMPAEMKEQGVTEDRLQLLREVTGAFRPGVL 908 (1470)
T ss_pred cccccccccccccc---ccccccccccccccccCCCcceEEEEEEEEEEccCccccccccCcCCceEeeCcEEEEECCeE
Confidence 000000000 0000 000000011123334466677899999999998765443333334567899999999999999
Q ss_pred EEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCCcccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCH
Q 000979 645 TALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDS 724 (1202)
Q Consensus 645 ~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~ 724 (1202)
+||+||||||||||||+|+|+.++|+.+|+|.+||.+.+...+++.+|||+|+|.+++.+||+|||.|++.++.+...+.
T Consensus 909 ~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~~~~~~~~~~~igyv~Q~d~~~~~lTV~E~L~~~a~lr~~~~~~~ 988 (1470)
T PLN03140 909 TALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQETFARISGYCEQNDIHSPQVTVRESLIYSAFLRLPKEVSK 988 (1470)
T ss_pred EEEECCCCCCHHHHHHHHcCCCCCCcccceEEECCccCChHHhhhheEEEccccccCCCCcHHHHHHHHHHhCCCCCCCH
Confidence 99999999999999999999987777899999999886554567789999999999999999999999988876655566
Q ss_pred HHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC
Q 000979 725 ETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT 804 (1202)
Q Consensus 725 ~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~ 804 (1202)
++++++++++++.++|.+++|+.+|.+++++|||||||||+||++|+.+|+||||||||+|||+.++..+++.|++++++
T Consensus 989 ~~~~~~v~~vl~~lgL~~~~~~~vg~~~~~~LSgGerkRvsIa~aL~~~P~lL~LDEPTsgLD~~~a~~v~~~L~~l~~~ 1068 (1470)
T PLN03140 989 EEKMMFVDEVMELVELDNLKDAIVGLPGVTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT 1068 (1470)
T ss_pred HHHHHHHHHHHHHCCChhHhCCccCCCCCCCcCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC
Confidence 66777899999999999999999998888899999999999999999999999999999999999999999999999988
Q ss_pred CCEEEEEecCCCHHHHHhcceEEEEecCCEEEEEcCCCccchhHHHHHhhCCCcccCCCCCCccceEEEcccchhhhhhc
Q 000979 805 GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLGRHSCHLISYFEAIPGVQKIKDGYNPATWMLEVSAASQELALG 884 (1202)
Q Consensus 805 g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G~~~~~~~~~~~~f~~~~~~~~~~~~~npa~~~~~~~~~~~~~~~~ 884 (1202)
|+|||+++|||+.++++.||++++|++||+++|+||++++++++++||++++|+++||+++|||||++|+++...+....
T Consensus 1069 g~tVI~t~Hq~~~~i~~~~D~vllL~~gG~~v~~G~~~~~~~~~~~yF~~~~g~~~~p~~~NPAd~~l~v~~~~~~~~~~ 1148 (1470)
T PLN03140 1069 GRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYSGPLGRNSHKIIEYFEAIPGVPKIKEKYNPATWMLEVSSLAAEVKLG 1148 (1470)
T ss_pred CCEEEEEeCCCCHHHHHhCCEEEEEcCCCEEEEECCcccccccHHHHHHhcCCCCCCCCCCCchhhhhhhhccccccccc
Confidence 99999999999977899999999999889999999998877899999999988777999999999999998765544445
Q ss_pred cchHHHhhhcHHHHHHHHHHHhhCCCCCCCCCCCCCCccCchhHHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHHHHH
Q 000979 885 IDFTEHYKRSDLYRRNKALIEDLSRPPPGSKDLYFPTQFSQSSWIQFVACLWKQHWSYWRNPPYTAVRFFFTAFIALLFG 964 (1202)
Q Consensus 885 ~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~l~~R~~~~~~R~~~~~~~~~~~~~~~~l~~g 964 (1202)
.|+++.|+.|+.+++..+.+++++.+.+..++...+++++.++|+|+++|++|+++++||||.+++.|+++++++|+++|
T Consensus 1149 ~d~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~~~l~~R~~~~~~R~p~~~~~r~~~~i~~al~~G 1228 (1470)
T PLN03140 1149 IDFAEHYKSSSLYQRNKALVKELSTPPPGASDLYFATQYSQSTWGQFKSCLWKQWWTYWRSPDYNLVRFFFTLAAALMVG 1228 (1470)
T ss_pred chHHHHHhccHHHHHHHHHHHHhccCCCCccccccCccccCCHHHHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHH
Confidence 68999999999998887777766665544444444567899999999999999999999999999999999999999999
Q ss_pred HHhhcCCCCCCChhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHhhHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHH
Q 000979 965 SLFWDLGGRTKRNQDLFNAMGSMFTAVLFLGVQYCSSVQPIVSVERTVFYREKAAGMYAGIPWALAQVMIEIPYILVQSV 1044 (1202)
Q Consensus 965 ~~f~~~~~~~~~~~~~~~~~g~lf~~~~~~~~~~~~~~~~~~~~er~v~~rE~~~~~Y~~~~y~~a~~~~~~p~~~~~~~ 1044 (1202)
++||+++++..+.++++++.|++|+++++.++.++.+++|.+..||++|+||+++|+|++.+|++|++++|+|+.++.++
T Consensus 1229 ~~f~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~p~~~~eR~vf~REr~~~~Y~~~~y~la~~l~eiP~~~~~~~ 1308 (1470)
T PLN03140 1229 TIFWKVGTKRSNANDLTMVIGAMYAAVLFVGINNCSTVQPMVAVERTVFYRERAAGMYSALPYAIAQVVCEIPYVLIQTT 1308 (1470)
T ss_pred HHhhCCCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999998766778999999999999999999888889999999999999999999999999999999999999999999
Q ss_pred hhhhhhccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhccCCcCCCCcchHhHH
Q 000979 1045 VYGAIVYAMIGFEWTAAKFFWYIFFMYFTLLFFTFYGMMAVALTPNHHIAAIVSTLFYGLWNVFSGFIIPRPRIPIWWRW 1124 (1202)
Q Consensus 1045 ~~~~i~Y~~~gl~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~lf~G~~i~~~~ip~~~~w 1124 (1202)
+|.+|+|||+||++++++||+|+++++++.++++++|+++++++|+..+|..+++++++++++||||++|+++||+||+|
T Consensus 1309 if~~i~Y~m~Gl~~~~~~f~~~~~~~~l~~~~~~~~g~~~~a~~p~~~~A~~~~~~~~~~~~lf~Gf~i~~~~iP~~~~W 1388 (1470)
T PLN03140 1309 YYTLIVYAMVAFEWTAAKFFWFYFISFFSFLYFTYYGMMTVSLTPNQQVAAIFAAAFYGLFNLFSGFFIPRPKIPKWWVW 1388 (1470)
T ss_pred HHHHHHHhhcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHeeeccChHHCchHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHhhcHHHHHHHHHHHHHhCCCcccccCC----CCCHHHHHHhhcCCCccchhHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 000979 1125 YYWANPIAWTLYGLVASQFGDMDDKKMDT----GETVKQFLKDYFDFKHDFLGVVAAVLVVFAVLFGFLFALGIKMFNFQ 1200 (1202)
Q Consensus 1125 ~~~~sp~~y~~~~l~~nef~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~l~~~~~~ 1200 (1202)
++|+||++|+++|++.|||+|.+.+|.+. +.++.+|+.++||++++++|++++|+++|+++|++++++++|++|||
T Consensus 1389 ~~~isp~~y~~~~l~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~il~~~~~~f~~~~~~~~~~~~~q 1468 (1470)
T PLN03140 1389 YYWICPVAWTVYGLIVSQYGDVEDTIKVPGGAPDPTIKWYIQDHYGYDPDFMGPVAAVLVGFTVFFAFIFAFCIRTLNFQ 1468 (1470)
T ss_pred HHHcCHHHHHHhhhHHHHhCCCCCcccCCCCCCCCcHHHHHHHhcCcCcccccchhhhHHHHHHHHHHHHHHHHHHhhcc
Confidence 99999999999999999999988766543 35788999999999999999999999999999999999999999999
Q ss_pred cC
Q 000979 1201 RR 1202 (1202)
Q Consensus 1201 ~~ 1202 (1202)
||
T Consensus 1469 ~r 1470 (1470)
T PLN03140 1469 TR 1470 (1470)
T ss_pred cC
Confidence 98
|
|
| >TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-160 Score=1580.94 Aligned_cols=1116 Identities=31% Similarity=0.542 Sum_probs=919.7
Q ss_pred HHHHHHHHHhCCcccccccccCCcccccCccccchhhHHHHHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHhHhCCCE
Q 000979 45 VITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGT 124 (1202)
Q Consensus 45 ~~v~~il~~lgL~~~~dT~VG~~~~~gLSGGQKqRvsIAraLv~~P~ILlLDEpTSGLDs~sa~~vv~~L~~~a~~~~tT 124 (1202)
+.+|.+++.+||++|+||.||++..++|||||||||+||++|+++|+||||||||||||+.++.++++.|++++++.|+|
T Consensus 183 ~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGerkRvsIA~aL~~~p~vlllDEPTsgLD~~~~~~i~~~L~~la~~~g~t 262 (1394)
T TIGR00956 183 HIADVYMATYGLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLGGAKIQCWDNATRGLDSATALEFIRALKTSANILDTT 262 (1394)
T ss_pred HHHHHHHHHcCcccccCceeCCCcCCCCCcccchHHHHHHHHHhCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHHhcCCE
Confidence 34577999999999999999999999999999999999999999999999999999999999999999999998766899
Q ss_pred EEEEecCCChHHHhhhcceEEecCCcEEEEcCcchHHHHHHhCCCCCCCCCChhhHHHHhcCchhhhhhhhhcCCCCccC
Q 000979 125 AVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLEFFASMGFRCPKRKGVADFLQEVTSRKDQRQYWAHKEKPYRFV 204 (1202)
Q Consensus 125 iIiaihQp~~s~~~~fD~IvvL~~G~vvy~G~~~el~~~F~~lG~~~p~~~n~ad~l~~v~~~~~~~~~~~~~~~~~~~~ 204 (1202)
+|+++|||+.+++++||+|++|++|+++|+|+.+++++||+++||+||+++||+||++++++..+.. ... ........
T Consensus 263 vii~~Hq~~~~i~~l~D~v~~L~~G~iv~~G~~~~~~~yF~~lG~~~p~~~n~aDfl~~~~~~~~~~-~~~-~~e~~~~~ 340 (1394)
T TIGR00956 263 PLVAIYQCSQDAYELFDKVIVLYEGYQIYFGPADKAKQYFEKMGFKCPDRQTTADFLTSLTSPAERQ-IKP-GYEKKVPR 340 (1394)
T ss_pred EEEEecCCCHHHHHhhceEEEEeCCeEEEECCHHHHHHHHHHcCCCCCCCCChHHHHHhccChhhhh-ccc-cccccCCC
Confidence 9999999999999999999999999999999999999999999999999999999999998765422 111 11111235
Q ss_pred CHHHHHHHHHhchhhhhhhhhhcCCCCc-----c----------cccccccccccccCcHHHHHHHHHHHHHHHHhcChH
Q 000979 205 TVQEFAEAFQSFHVGQKISDELRTPFDK-----S----------KSHRAALTTETYGVGKRELLKANISRELLLMKRNSF 269 (1202)
Q Consensus 205 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~-----~----------~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~r~~~ 269 (1202)
+.+++.+.|++++.++...++.+....+ . ...+.......+..+++.|++.+++|.++..+||+.
T Consensus 341 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~~~l~~R~~~~~~Rd~~ 420 (1394)
T TIGR00956 341 TPQEFETYWRNSPEYAQLMKEIDEYLDRCSESDTKEAYRESHVAKQSKRTRPSSPYTVSFSMQVKYCLARNFLRMKGNPS 420 (1394)
T ss_pred CHHHHHHHHHcCHHHHHHHHHHHHHhhhccchhhHHHHHHHHHhhhcccccCCCCCcCCHHHHHHHHHHHHHHHHhcCHH
Confidence 6789999999887665544433211100 0 000011122346778999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcccCCCCccccccchhhHHHHHHHHHHHhhHHHHHHhhhcchhHHHhhcCCCCChhhHH
Q 000979 270 VYIFKLIQIAFVAVVYMTLFLRTKMHKDTVTDGGIFAGATFFAITMVNFNGFSEISMTIAKLPVFYKQRDFRFFPPWAYA 349 (1202)
Q Consensus 270 ~~~~~~~~~ii~~~~~g~~f~~~~~~~~~~~~~~~~~g~~f~~~~~~~~~~~~~~~~~~~~~~v~~rer~~~~y~~~~y~ 349 (1202)
.+..++++.+++|+++|++||+.+.+.. +..++.|++|+++.+..+.++..+...+.+|++++|||..++|++++|+
T Consensus 421 ~~~~r~~~~ii~~li~G~~F~~~~~~~~---~~~~r~g~lf~~~~~~~~~~~~~i~~~~~eR~i~~re~~~~~Y~~~ay~ 497 (1394)
T TIGR00956 421 FTLFMVFGNIIMALILSSVFYNLPKNTS---DFYSRGGALFFAILFNAFSSLLEIASMYEARPIVEKHRKYALYHPSADA 497 (1394)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCCch---hHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcceeeeccccccCHHHHH
Confidence 9999999999999999999999875433 3456789999999998888888888888899999999999999999999
Q ss_pred HHHHHHhhhHHHHHHHHHHhhhhhcccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHHH
Q 000979 350 IPSWILKIPVSFLEVAVWVFLSYYVVGYDSNAGRFFKQYALLLGVNQMASALFRFIAVTGRNMVVANTFGSFALLVLLSL 429 (1202)
Q Consensus 350 la~~l~~~p~~~~~~~i~~~i~y~~~gl~~~~~~f~~~~~~~~~~~~~~~~l~~~i~~~~~~~~ia~~i~~~~~~~~~l~ 429 (1202)
+|+.++++|+.++.+++|++|+|||+|++.++++|+.+++.+++...++.+++.+++++++++.+|+.+++++++++++|
T Consensus 498 la~~l~~iP~~~~~~~if~~i~Yfm~gl~~~~~~Ff~f~l~~~l~~~~~~~~~~~i~a~~~~~~~A~~~~~~~~~~~~lf 577 (1394)
T TIGR00956 498 IASIISEIPFKIIESVVFNIILYFMVNFRRTAGRFFFYLLILFICTLAMSHLFRSIGAVTKTLSEAMTPAAILLLALSIY 577 (1394)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhEEcCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccccCCCCccchhhhhhhhCHHHHHHHHHHHhhcCCCCcccc---cC-----------CC----------CcccHHHHH
Q 000979 430 GGFILSREDIKKWWKWAYWCSPLTYAQNAIVANEFLGHSWKKF---TQ-----------DS----------SETLGVQVL 485 (1202)
Q Consensus 430 ~G~~i~~~~ip~~~~w~~~isp~~ya~~~~~~~e~~~~~~~~~---~~-----------~~----------~~~~g~~~l 485 (1202)
+||+++.+.||.||+|++|+||++|++++++.|||.+..+.|. +. .. +...|.++|
T Consensus 578 ~Gf~i~~~~mp~~~~W~~yisp~~yafeal~~nef~~~~~~C~~~~p~g~~y~~~~~~~~~C~~~g~~~g~~~~~G~~~L 657 (1394)
T TIGR00956 578 TGFAIPRPSMLGWSKWIYYVNPLAYAFESLMVNEFHGRRFECSQYVPSGGGYDNLGVTNKVCTVVGAEPGQDYVDGDDYL 657 (1394)
T ss_pred cccccChhhccHHHHHHHHcCHHHHHHHHHHHhhhcCCcccccccccCCCCCCCCCccCccccCCCCcCCcccccHHHHH
Confidence 9999999999999999999999999999999999998777653 10 01 134688888
Q ss_pred hh-cCcccccchhHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCccceeccccccccccccCCcccccccCCCCCCCCCC
Q 000979 486 KS-RGFFAHEYWYWLGLGALFGFVLLLNFAYTLALTFLDPFEKPRAVITEEIESNEQDDRIGGNVQLSTLGGSSNHNTRS 564 (1202)
Q Consensus 486 ~~-~~~~~~~~~~~~~~~il~g~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 564 (1202)
+. +++ ...+.|.++++++++.++|.+.+++++.+.+.....+.....+............ ....
T Consensus 658 ~~~~~~--~~~~~w~n~gil~~~~v~f~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~ 722 (1394)
T TIGR00956 658 KLSFQY--YNSHKWRNFGIIIGFTVFFFFVYILLTEFNKGAKQKGEILVFRRGSLKRAKKAGE-------------TSAS 722 (1394)
T ss_pred HhcCCc--ccchhhHHHHHHHHHHHHHHHHHHHHHHhccccCCCCceEeeccccccchhhccc-------------cccc
Confidence 84 444 3457999999999999999999999999987554443222211100000000000 0000
Q ss_pred CCCCccccccccchhhhhhhhhccC-CCCCCCccCCCCceeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCe
Q 000979 565 GSTDDIRGQQSSSQSLSLAEAEASR-PKKKGMVLPFEPHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGV 643 (1202)
Q Consensus 565 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge 643 (1202)
...+..+........ ...+.+. ..............++|+||+++++.+ ++++.+|+|||++++|||
T Consensus 723 ~~~~~e~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~~~nl~~~~~~~---------~~~~~iL~~vs~~i~~Ge 790 (1394)
T TIGR00956 723 NKNDIEAGEVLGSTD---LTDESDDVNDEKDMEKESGEDIFHWRNLTYEVKIK---------KEKRVILNNVDGWVKPGT 790 (1394)
T ss_pred ccccccccccCCCCc---cccccccccccccccccCCCceEEEEeeEEEecCC---------CCCcEeeeCCEEEEECCE
Confidence 000000000000000 0000000 000000001112357999999988532 234679999999999999
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCCCc-eEEEEEEEcCccCCcccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCC
Q 000979 644 LTALMGVSGAGKTTLMDVLAGRKTGG-YITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEV 722 (1202)
Q Consensus 644 ~~al~G~sGaGKSTLl~~l~g~~~~~-~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~ 722 (1202)
++||+||||||||||||+|+|+.+++ +.+|+|.+||.+... .+++.+|||+|+|.+++.+||+||+.|++.++.+...
T Consensus 791 ~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~~-~~~~~i~yv~Q~~~~~~~~Tv~E~L~~~a~l~~~~~~ 869 (1394)
T TIGR00956 791 LTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLDS-SFQRSIGYVQQQDLHLPTSTVRESLRFSAYLRQPKSV 869 (1394)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCh-hhhcceeeecccccCCCCCCHHHHHHHHHHhCCCCCC
Confidence 99999999999999999999987644 457999999998753 4678899999999999999999999999988866555
Q ss_pred CHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCC-EEEEeCCCCCCCHHHHHHHHHHHHHH
Q 000979 723 DSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPS-IIFMDEPTSGLDARAAAIVMRTVRNT 801 (1202)
Q Consensus 723 ~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~-illlDEPtsgLD~~~~~~v~~~l~~~ 801 (1202)
++++++++++++++.++|.+++|+.+|.++. +||||||||++||+||+.+|+ ||||||||||||+.++..+++.|+++
T Consensus 870 ~~~~~~~~v~~~l~~l~L~~~~d~~v~~~~~-~LSgGqrqRl~Ia~aL~~~P~~iLlLDEPTsgLD~~~~~~i~~~L~~l 948 (1394)
T TIGR00956 870 SKSEKMEYVEEVIKLLEMESYADAVVGVPGE-GLNVEQRKRLTIGVELVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKL 948 (1394)
T ss_pred CHHHHHHHHHHHHHHcCChhhCCCeeCCCCC-CCCHHHhhHHHHHHHHHcCCCeEEEEcCCCCCCCHHHHHHHHHHHHHH
Confidence 6667778899999999999999999987643 799999999999999999997 99999999999999999999999999
Q ss_pred HhCCCEEEEEecCCCHHHHHhcceEEEEecCCEEEEEcCCCccchhHHHHHhhCCCcccCCCCCCccceEEEcccchhhh
Q 000979 802 VDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLGRHSCHLISYFEAIPGVQKIKDGYNPATWMLEVSAASQEL 881 (1202)
Q Consensus 802 ~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G~~~~~~~~~~~~f~~~~~~~~~~~~~npa~~~~~~~~~~~~~ 881 (1202)
+++|+|||+++|||+..+++.||++++|++||+++|+|++++.++++++||+.+ |.++||+++|||||++|+.+...+.
T Consensus 949 a~~g~tvI~t~H~~~~~~~~~~D~vl~L~~GG~iv~~G~~~~~~~~~~~yf~~~-G~~~~p~~~NpAd~~ldvi~~~~~~ 1027 (1394)
T TIGR00956 949 ADHGQAILCTIHQPSAILFEEFDRLLLLQKGGQTVYFGDLGENSHTIINYFEKH-GAPKCPEDANPAEWMLEVIGAAPGA 1027 (1394)
T ss_pred HHcCCEEEEEecCCCHHHHHhcCEEEEEcCCCEEEEECCcccccchHHHHHHhc-CCCCCCCCCCHHHHHHHHhhccccc
Confidence 888999999999999767889999999998779999999988778899999987 5557999999999999998754333
Q ss_pred hhccchHHHhhhcHHHHHHHHHHHhhCCCCCCC---CCCCCCCccCchhHHHHHHHHHHHHHHhhcChhhHHHHHHHHHH
Q 000979 882 ALGIDFTEHYKRSDLYRRNKALIEDLSRPPPGS---KDLYFPTQFSQSSWIQFVACLWKQHWSYWRNPPYTAVRFFFTAF 958 (1202)
Q Consensus 882 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~q~~~l~~R~~~~~~R~~~~~~~~~~~~~~ 958 (1202)
....++.+.|+.|+.+++..+.++....+.... .+.....++++|+|+|+++|++|+++++||||.+++.|++++++
T Consensus 1028 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~q~~~l~~R~~~~~~R~~~~~~~r~~~~i~ 1107 (1394)
T TIGR00956 1028 HANQDYHEVWRNSSEYQAVKNELDRLEAELSKAEDDNDPDALSKYAASLWYQFKLVLWRTFQQYWRTPDYLYSKFFLTIF 1107 (1394)
T ss_pred chhccHHHHHhcCHHHHHHHHHHHHhhcccccCccccccccccccCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 334578999999988776655544433221111 11112246889999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCCCCCCChhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHhhHHH-HHHhcCCCCChHHHHHHHHHHHHH
Q 000979 959 IALLFGSLFWDLGGRTKRNQDLFNAMGSMFTAVLFLGVQYCSSVQPIVSVERTVF-YREKAAGMYAGIPWALAQVMIEIP 1037 (1202)
Q Consensus 959 ~~l~~g~~f~~~~~~~~~~~~~~~~~g~lf~~~~~~~~~~~~~~~~~~~~er~v~-~rE~~~~~Y~~~~y~~a~~~~~~p 1037 (1202)
+|+++|++||++++ +.+++++|+|++|+++++.++.. ...++.++.||.+| +||+++|+|++.+|++|++++|+|
T Consensus 1108 ~~l~~G~~f~~~~~---~~~~i~~~~g~~f~~~~~~~~~~-~~~~~~f~~~r~~~~~RE~~s~~Y~~~~y~~a~~l~elP 1183 (1394)
T TIGR00956 1108 AALFIGFTFFKVGT---SLQGLQNQMFAVFMATVLFNPLI-QQYLPPFVAQRDLYEVRERPSRTFSWLAFIAAQITVEIP 1183 (1394)
T ss_pred HHHHHHHHHhCCCC---CHHHHHHHHHHHHHHHHHHHHHH-HHhhhhHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHH
Confidence 99999999999986 46789999999999887776653 34556777888885 899999999999999999999999
Q ss_pred HHHHHHHhhhhhhccccccccchHH-------HHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcc
Q 000979 1038 YILVQSVVYGAIVYAMIGFEWTAAK-------FFWYIFFMYFTLLFFTFYGMMAVALTPNHHIAAIVSTLFYGLWNVFSG 1110 (1202)
Q Consensus 1038 ~~~~~~~~~~~i~Y~~~gl~~~~~~-------f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~lf~G 1110 (1202)
+.++.+++|.+|+|||+||++++.. |++|++++++..++++++|+++++++|+..+|+.++++++.++++|||
T Consensus 1184 ~~~~~~~if~~i~Y~~~Gl~~~~~~~~~~~~~f~~~~~~~~~~~~~~~s~g~~~~~~~~~~~~a~~~~~~~~~~~~lf~G 1263 (1394)
T TIGR00956 1184 YNLVAGTIFFFIWYYPVGFYWNASKTGQVHERGVLFWLLSTMFFLYFSTLGQMVISFNPNADNAAVLASLLFTMCLSFCG 1263 (1394)
T ss_pred HHHHHHHHHHhheeecccccCcccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHhcc
Confidence 9999999999999999999988766 999999999999999999999999999999999999999999999999
Q ss_pred CCcCCCCcchHhHHhHhhcHHHHHHHHHHHHHhCCCcccccC---------CCC--------------------------
Q 000979 1111 FIIPRPRIPIWWRWYYWANPIAWTLYGLVASQFGDMDDKKMD---------TGE-------------------------- 1155 (1202)
Q Consensus 1111 ~~i~~~~ip~~~~w~~~~sp~~y~~~~l~~nef~~~~~~~~~---------~~~-------------------------- 1155 (1202)
|++|+++||.||+|++|+||++|+++|++.|||++.+.+|.. .|.
T Consensus 1264 ~~~~~~~ip~~~~w~~~~sp~~y~~~~l~~~~~~~~~~~C~~~e~~~f~pp~~~tC~~y~~~~~~~~~G~l~~~~a~~~C 1343 (1394)
T TIGR00956 1264 VLAPPSRMPGFWIFMYRCSPFTYLVQALLSTGLADVPVTCKVKELLTFNPPSGQTCGEYMKPYLENAGGYLLNPNATDSC 1343 (1394)
T ss_pred ccCChhHCcHHHhHHHhcCHHHHHHHHHHHHHcCCCeeecCccccceecCCCCCCHHHHHHHHHhhCCcEeeCCCCCCCC
Confidence 999999999999999999999999999999999998876643 122
Q ss_pred ------CHHHHHHhhcCCCccchhHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 000979 1156 ------TVKQFLKDYFDFKHDFLGVVAAVLVVFAVLFGFLFALGIKMFNFQR 1201 (1202)
Q Consensus 1156 ------~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~l~~~~~~~ 1201 (1202)
++.+|+ ..++++.++.|+|++|+++|++++ +++++++.++...+
T Consensus 1344 ~yC~~~~~~~~l-~~~~~~~~~~w~~~~i~~~~~~~~-~~~~~~l~~~~r~~ 1393 (1394)
T TIGR00956 1344 SFCQYSYTNDFL-EPISSKYSGRWRNFGIFIAFIFFN-IIATVFFYWLARVP 1393 (1394)
T ss_pred CcCCCCCHHHHH-HHcCCcccccccchhhhhHHHHHH-HHHHHhhheEEEcC
Confidence 334454 467899999999999999999888 77778888765443
|
|
| >KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-95 Score=886.39 Aligned_cols=579 Identities=32% Similarity=0.582 Sum_probs=502.6
Q ss_pred CCceeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCc-eEEEEEEEc
Q 000979 600 EPHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG-YITGNITIS 678 (1202)
Q Consensus 600 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~-~~~G~i~~~ 678 (1202)
.+..+.|+|+++..+.+. ...+++|+|||++++|||++||||||||||||||++|+|+...+ ..+|+|.+|
T Consensus 22 ~~~~~~~~~~~~~~~~~~--------~~~k~iL~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvN 93 (613)
T KOG0061|consen 22 EPVKLSFRNLTLSSKEKS--------KKTKTILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLN 93 (613)
T ss_pred ccceeEEEEEEEEecCCC--------CccceeeeCcEEEEecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEEC
Confidence 456789999998875321 13578999999999999999999999999999999999998764 689999999
Q ss_pred CccCCcccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCH
Q 000979 679 GYPKKQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLST 758 (1202)
Q Consensus 679 g~~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSg 758 (1202)
|++...+.+++.+|||.|||.++|++||+|++.|+|.+|++...+.++++++|+++++.+||.+++|+++|+++.+++||
T Consensus 94 G~~~~~~~~~~~s~yV~QdD~l~~~LTV~EtL~f~A~lrlp~~~~~~~k~~~V~~vi~~LgL~~~~~t~ig~~~~rgiSG 173 (613)
T KOG0061|consen 94 GRPRDSRSFRKISGYVQQDDVLLPTLTVRETLRFSALLRLPSSLSKEEKRERVEEVISELGLEKCADTLIGNPGIRGLSG 173 (613)
T ss_pred CccCchhhhhheeEEEcccccccccccHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCChhhccceecCCCCCcccc
Confidence 98877788899999999999999999999999999999999888899999999999999999999999999988899999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCCEEEEE
Q 000979 759 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYV 838 (1202)
Q Consensus 759 GqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~ 838 (1202)
||||||+||.+|++||+||+|||||||||+.++.++++.|+++|++|+|||+++|||+.+++++||++++|++ |+++|+
T Consensus 174 GErkRvsia~Ell~~P~iLflDEPTSGLDS~sA~~vv~~Lk~lA~~grtVi~tIHQPss~lf~lFD~l~lLs~-G~~vy~ 252 (613)
T KOG0061|consen 174 GERKRVSIALELLTDPSILFLDEPTSGLDSFSALQVVQLLKRLARSGRTVICTIHQPSSELFELFDKLLLLSE-GEVVYS 252 (613)
T ss_pred chhhHHHHHHHHHcCCCEEEecCCCCCcchhhHHHHHHHHHHHHhCCCEEEEEEeCCcHHHHHHHhHhhhhcC-CcEEEe
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999996 799999
Q ss_pred cCCCccchhHHHHHhhCCCcccCCCCCCccceEEEcccch---hhhhh---ccchHHHhhhcHHHHHHHHHHHhhCCCCC
Q 000979 839 GPLGRHSCHLISYFEAIPGVQKIKDGYNPATWMLEVSAAS---QELAL---GIDFTEHYKRSDLYRRNKALIEDLSRPPP 912 (1202)
Q Consensus 839 G~~~~~~~~~~~~f~~~~~~~~~~~~~npa~~~~~~~~~~---~~~~~---~~~~~~~~~~s~~~~~~~~~~~~~~~~~~ 912 (1202)
|++ +++.+||++. |. +||++.||+||++|+.+.. ++... .....+.++..+...+... .......
T Consensus 253 G~~----~~~~~ff~~~-G~-~~P~~~Npadf~l~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~ 323 (613)
T KOG0061|consen 253 GSP----RELLEFFSSL-GF-PCPELENPADFLLDLLSVDSGTRELEEAVRIAKLINKFSQTDNLKKTLE---ALEKSLS 323 (613)
T ss_pred cCH----HHHHHHHHhC-CC-CCCCcCChHHHHHHHHccCCCchhHHhHHHHHHHhhhccccchhhhhHH---HHhhhcc
Confidence 998 5789999999 45 5999999999999987742 11100 0000111110111111100 0000000
Q ss_pred CCCCCCCCCccCchhHHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHHHHH
Q 000979 913 GSKDLYFPTQFSQSSWIQFVACLWKQHWSYWRNPPYTAVRFFFTAFIALLFGSLFWDLGGRTKRNQDLFNAMGSMFTAVL 992 (1202)
Q Consensus 913 ~~~~~~~~~~~~~~~~~q~~~l~~R~~~~~~R~~~~~~~~~~~~~~~~l~~g~~f~~~~~~~~~~~~~~~~~g~lf~~~~ 992 (1202)
... ..+....++||.|++.+++|.+++.+|||.+...|.++.+.+|+++|++||++++ +..+++++.|++|+.+.
T Consensus 324 ~~~--~~~~~~~~s~~~q~~~L~~R~~~~~~R~~~~~~~r~~~~~~~~~~lg~~~~~~~~---~~~~~~~~~g~~~~~~~ 398 (613)
T KOG0061|consen 324 TSK--KVEIGTSPSWWTQFKILLKRSLKNIRRDPSLLLLRLIQSLVTGLLLGLLYLNLGN---DAKGIQNRLGLFFFILS 398 (613)
T ss_pred ccc--ccccccCCcHHHHHHHHHHHHhHHHhhcHHHHHHHHHHHHHHHHHHHHHhhCCCC---chHHHHHHHHHHHHHHH
Confidence 000 0111126899999999999999999999999999999999999999999999976 35667799999999999
Q ss_pred HHHHHHhhhhhhhHHHhhHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhccccccccchHHHHHHHHHHHH
Q 000979 993 FLGVQYCSSVQPIVSVERTVFYREKAAGMYAGIPWALAQVMIEIPYILVQSVVYGAIVYAMIGFEWTAAKFFWYIFFMYF 1072 (1202)
Q Consensus 993 ~~~~~~~~~~~~~~~~er~v~~rE~~~~~Y~~~~y~~a~~~~~~p~~~~~~~~~~~i~Y~~~gl~~~~~~f~~~~~~~~~ 1072 (1202)
++.+..+.+.++.|+.||++|.||+.+|+|+.++|++|++++++|+.++.+++|.+|+|||+|++++..+|++|++++++
T Consensus 399 ~~~f~~~~~~i~~f~~e~~~f~rE~~~~~Y~~s~y~la~~l~~lP~~~i~~~if~~i~Y~m~gl~~~~~~f~~~~l~~~~ 478 (613)
T KOG0061|consen 399 FMTFLSMFGAVPVFPQERPIFLRETSSGLYRLSSYYLAKTLAELPFLLVLSIIFSSIVYWMVGLNPGLSRFLYFLLIILL 478 (613)
T ss_pred HHHHHHHHhHHHHhHHHHHHHHHHHhcCchhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHH
Confidence 88888888878999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhccCCcCCCCcchHhHHhHhhcHHHHHHHHHHHHHhCCCcccccC
Q 000979 1073 TLLFFTFYGMMAVALTPNHHIAAIVSTLFYGLWNVFSGFIIPRPRIPIWWRWYYWANPIAWTLYGLVASQFGDMDDKKMD 1152 (1202)
Q Consensus 1073 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~lf~G~~i~~~~ip~~~~w~~~~sp~~y~~~~l~~nef~~~~~~~~~ 1152 (1202)
..++++++|++++++.||...|..+++++++.|++|+||+++.++||.||+|++|+|+++|++||++.|||.+....|..
T Consensus 479 ~~~~a~s~~~~i~~~~~~~~~a~~~~~~~~~~f~l~~G~fi~~~~ip~~~~w~~~~S~~ry~~e~l~~n~~~~~~~~~~~ 558 (613)
T KOG0061|consen 479 SSLVAESLGLFISAIVPNLSLATSLGPVLLLPFLLFGGFFINFDSIPKYFRWISYLSYFRYAFEALLINQFSGGSSRCFL 558 (613)
T ss_pred HHHHHHHHHHHHHHhccchhheeehHHHHHHHHHHHhhhhcCcccccHHHHHHHHHhHHHHHHHHHHHHHhhcccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999863333422
Q ss_pred C-----CCCHHHHHHhhcCCCccchhHHHHHHHHHHHHHHHHHHHHHHhhccccC
Q 000979 1153 T-----GETVKQFLKDYFDFKHDFLGVVAAVLVVFAVLFGFLFALGIKMFNFQRR 1202 (1202)
Q Consensus 1153 ~-----~~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~l~~~~~~~~ 1202 (1202)
. ..++.+++ ..++++..+.|.|+.+++++.++|++++++++++..+.+|
T Consensus 559 ~~~~~~~~~~~~~l-~~~~~~~~~~~~~l~~l~~~~~~~~il~y~~L~~~~~~~~ 612 (613)
T KOG0061|consen 559 SGNLCCESTGEDVL-KQLGFEDSSFWLDLLVLLAFIVFFRVLGYLALRFRVKRKR 612 (613)
T ss_pred CcCCcccccHHHHH-HhcCCcccccchhHHHHHHHHHHHHHHHHHHHHhhccccC
Confidence 1 12345544 5789999999999999999999999999999998777654
|
|
| >TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-94 Score=892.52 Aligned_cols=566 Identities=29% Similarity=0.492 Sum_probs=494.8
Q ss_pred CceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCc-eEEEEEEEcCccCCcccccceEEEeecCCCCCCCCC
Q 000979 627 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG-YITGNITISGYPKKQETFARISGYCEQNDIHSPFVT 705 (1202)
Q Consensus 627 ~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~-~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~lT 705 (1202)
+++.+|+|+|++++|||++||+|||||||||||++|+|+.+++ ..+|+|.+||.+.....+++.+|||+|+|.+++.+|
T Consensus 36 ~~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~~~~~~~~i~yv~Q~~~~~~~lT 115 (617)
T TIGR00955 36 PRKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRAISAYVQQDDLFIPTLT 115 (617)
T ss_pred CccccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCHHHHhhhceeeccccccCccCc
Confidence 4577999999999999999999999999999999999987543 358999999998765567788999999999999999
Q ss_pred HHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCC-CCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCC
Q 000979 706 IYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPG-VSGLSTEQRKRLTIAVELVANPSIIFMDEPTS 784 (1202)
Q Consensus 706 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~-~~~LSgGqrqRv~ia~aL~~~p~illlDEPts 784 (1202)
|+||+.|++.++.+...+.++++++++++++.+||.+++|+.+|+++ .++||||||||++||+||+.+|++|+|||||+
T Consensus 116 V~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~~LSgGqrkRvsia~aL~~~p~vlllDEPts 195 (617)
T TIGR00955 116 VREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDEPTS 195 (617)
T ss_pred HHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCchhcCcCccCCCCCCCCcCcchhhHHHHHHHHHcCCCEEEeeCCCc
Confidence 99999999988877666677778889999999999999999999753 57899999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCCEEEEEcCCCccchhHHHHHhhCCCcccCCCC
Q 000979 785 GLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLGRHSCHLISYFEAIPGVQKIKDG 864 (1202)
Q Consensus 785 gLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G~~~~~~~~~~~~f~~~~~~~~~~~~ 864 (1202)
|||+.++..+++.|++++++|+|||+++|||+.++++.||++++|+ +|+++|+|++ +++.+||+++| . +||++
T Consensus 196 gLD~~~~~~l~~~L~~l~~~g~tvi~~~hq~~~~i~~~~D~i~ll~-~G~~v~~G~~----~~~~~~f~~~g-~-~~p~~ 268 (617)
T TIGR00955 196 GLDSFMAYSVVQVLKGLAQKGKTIICTIHQPSSELFELFDKIILMA-EGRVAYLGSP----DQAVPFFSDLG-H-PCPEN 268 (617)
T ss_pred chhHHHHHHHHHHHHHHHhCCCEEEEEeCCCCHHHHHHhceEEEee-CCeEEEECCH----HHHHHHHHHcC-C-CCCCC
Confidence 9999999999999999988899999999999888999999999998 5899999997 56899999984 4 68999
Q ss_pred CCccceEEEcccchhhhh-----hccchHHHhhhcHHHHHHHHHHHhhCCCCC---CCCCCCCCCccCchhHHHHHHHHH
Q 000979 865 YNPATWMLEVSAASQELA-----LGIDFTEHYKRSDLYRRNKALIEDLSRPPP---GSKDLYFPTQFSQSSWIQFVACLW 936 (1202)
Q Consensus 865 ~npa~~~~~~~~~~~~~~-----~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~q~~~l~~ 936 (1202)
.||+||++|+.+...+.. ...++.+.|+.++.+++..+.......+.+ .........++..+|+.|+.+|++
T Consensus 269 ~n~ad~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~l~~ 348 (617)
T TIGR00955 269 YNPADFYVQVLAVIPGSENESRERIEKICDSFAVSDIGRDMLVNTNLWSGKAGGLVKDSENMEGIGYNASWWTQFYALLK 348 (617)
T ss_pred CChHHHHHHHhhcCcccccchHHHHHHHHHHHhcchhhHHHHHHhhhhhccccccccccccccccccCCCHHHHHHHHHH
Confidence 999999999876432211 112345566666555544333221111110 111111224567899999999999
Q ss_pred HHHHHhhcChhhHHHHHHHHHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHhhHHHHHH
Q 000979 937 KQHWSYWRNPPYTAVRFFFTAFIALLFGSLFWDLGGRTKRNQDLFNAMGSMFTAVLFLGVQYCSSVQPIVSVERTVFYRE 1016 (1202)
Q Consensus 937 R~~~~~~R~~~~~~~~~~~~~~~~l~~g~~f~~~~~~~~~~~~~~~~~g~lf~~~~~~~~~~~~~~~~~~~~er~v~~rE 1016 (1202)
|+++..||||.++..|+++.+++|+++|++||+++. +.++++++.|++|++++++++.++....+.++.||++|+||
T Consensus 349 R~~~~~~R~~~~~~~~~~~~i~~~li~G~~f~~~~~---~~~~~~~~~g~lf~~~~~~~f~~~~~~~~~f~~er~v~~rE 425 (617)
T TIGR00955 349 RSWLSVLRDPLLLKVRLIQTMMTAILIGLIYLGQGL---TQKGVQNINGALFLFLTNMTFQNVFPVINVFTAELPVFLRE 425 (617)
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhcCCCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999986 45788999999999998888887777778899999999999
Q ss_pred hcCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHH
Q 000979 1017 KAAGMYAGIPWALAQVMIEIPYILVQSVVYGAIVYAMIGFEWTAAKFFWYIFFMYFTLLFFTFYGMMAVALTPNHHIAAI 1096 (1202)
Q Consensus 1017 ~~~~~Y~~~~y~~a~~~~~~p~~~~~~~~~~~i~Y~~~gl~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 1096 (1202)
+.+|+|++++|++|++++|+|+.++.+++|.+|+|||+|+++++.+||+|++++++..++++++|+++++++|+..+|+.
T Consensus 426 ~~~~~Y~~~~y~la~~l~~lp~~~~~~~if~~i~Y~~~gl~~~~~~f~~f~l~~~l~~~~~~s~~~~i~~~~~~~~~a~~ 505 (617)
T TIGR00955 426 TRSGLYRVSAYFLAKTIAELPLFIILPALFTSITYWMIGLRSGATHFLTFLFLVTLVANVATSFGYLISCAFSSTSMALT 505 (617)
T ss_pred hcCCccCHHHHHHHHHHHHHHHHHHHHHHHHhhhheeccCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhccCCcCCCCcchHhHHhHhhcHHHHHHHHHHHHHhCCCcc-cccCCC-----CCHHHHHHhhcCCCcc
Q 000979 1097 VSTLFYGLWNVFSGFIIPRPRIPIWWRWYYWANPIAWTLYGLVASQFGDMDD-KKMDTG-----ETVKQFLKDYFDFKHD 1170 (1202)
Q Consensus 1097 ~~~~~~~~~~lf~G~~i~~~~ip~~~~w~~~~sp~~y~~~~l~~nef~~~~~-~~~~~~-----~~~~~~~~~~~~~~~~ 1170 (1202)
+++++++++++|+||+++.++||+||+|++|+||++|+++|++.|||.+.++ +|...+ +..++++++.||++.+
T Consensus 506 ~~~~~~~~~~lf~G~~i~~~~ip~~~~W~~~isp~~ya~~al~~nef~~~~~~~c~~~~~~~~c~~~g~~~l~~~g~~~~ 585 (617)
T TIGR00955 506 VGPPFVIPFLLFGGFFINSDSIPVYFKWLSYLSWFRYGNEGLLINQWSDVDNIECTSANTTGPCPSSGEVILETLSFRNA 585 (617)
T ss_pred HHHHHHHHHHHHhhcccChhhccHHHHHHHHcCHHHHHHHHHHHHHhCCCccccccCcCcCCCCCcChHHHHHhcCCCcc
Confidence 9999999999999999999999999999999999999999999999998765 564211 1124666789999999
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHhhccccC
Q 000979 1171 FLGVVAAVLVVFAVLFGFLFALGIKMFNFQRR 1202 (1202)
Q Consensus 1171 ~~~~~~~il~~~~~~~~~~~~~~l~~~~~~~~ 1202 (1202)
++|.++++|++|.++|+++++++||+...++|
T Consensus 586 ~~~~~~~il~~~~~~~~~l~~~~L~~~~~~~~ 617 (617)
T TIGR00955 586 DLYLDLIGLVILIFFFRLLAYFALRIRIRRKR 617 (617)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 99999999999999999999999999877776
|
|
| >PLN03211 ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-94 Score=886.09 Aligned_cols=582 Identities=24% Similarity=0.406 Sum_probs=480.7
Q ss_pred CCceeEEeeeEEEEecCchh--------------hhc--ccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHh
Q 000979 600 EPHSLTFDEVVYSVDMPEEM--------------KVQ--GVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLA 663 (1202)
Q Consensus 600 ~~~~~~~~~~~~~~~~~~~~--------------~~~--~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~ 663 (1202)
.+..++|.|++|+++..... +.. ....+++++|+|||+++++||++||+||||||||||||+|+
T Consensus 36 ~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLa 115 (659)
T PLN03211 36 YPITLKFMDVCYRVKFENMKNKGSNIKRILGHKPKISDETRQIQERTILNGVTGMASPGEILAVLGPSGSGKSTLLNALA 115 (659)
T ss_pred CceEEEEEeEEEEEccCCCcccccccccccccccccccccccCCCCeeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHh
Confidence 35789999999998654210 000 01124578999999999999999999999999999999999
Q ss_pred CCCCCceEEEEEEEcCccCCcccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCcc
Q 000979 664 GRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPL 743 (1202)
Q Consensus 664 g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~ 743 (1202)
|+.+++..+|+|.+||.+... ..++.++||+|++.+++.+||+||+.|.+.++.+...+.++++++++++++.+||.++
T Consensus 116 G~~~~~~~sG~I~inG~~~~~-~~~~~i~yv~Q~~~l~~~lTV~E~l~~~a~~~~~~~~~~~~~~~~v~~~l~~lgL~~~ 194 (659)
T PLN03211 116 GRIQGNNFTGTILANNRKPTK-QILKRTGFVTQDDILYPHLTVRETLVFCSLLRLPKSLTKQEKILVAESVISELGLTKC 194 (659)
T ss_pred CCCCCCceeEEEEECCEECch-hhccceEEECcccccCCcCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhh
Confidence 987654468999999988643 3345689999999999999999999998877755445556667789999999999999
Q ss_pred ccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhc
Q 000979 744 RQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAF 823 (1202)
Q Consensus 744 ~~~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~ 823 (1202)
.|+.+|+...++||||||||++||++|+.+|+||+|||||+|||+.++..+++.|++++++|+|||+++|||+.++++.|
T Consensus 195 ~~t~vg~~~~~~LSgGerqRv~ia~aL~~~P~iLlLDEPtsgLD~~~~~~l~~~L~~l~~~g~TvI~~sH~~~~~i~~~~ 274 (659)
T PLN03211 195 ENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDATAAYRLVLTLGSLAQKGKTIVTSMHQPSSRVYQMF 274 (659)
T ss_pred cCceeCCCCCCCcChhhhhHHHHHHHHHhCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhh
Confidence 99999887778999999999999999999999999999999999999999999999998889999999999987789999
Q ss_pred ceEEEEecCCEEEEEcCCCccchhHHHHHhhCCCcccCCCCCCccceEEEcccchhhhh------h---ccchHHHhhhc
Q 000979 824 DELFLMKRGGQEIYVGPLGRHSCHLISYFEAIPGVQKIKDGYNPATWMLEVSAASQELA------L---GIDFTEHYKRS 894 (1202)
Q Consensus 824 d~v~~l~~gG~~~~~G~~~~~~~~~~~~f~~~~~~~~~~~~~npa~~~~~~~~~~~~~~------~---~~~~~~~~~~s 894 (1202)
|++++|+ +|+++|.|++ +++.+||+++| + +||.++|||||++|+.+...+.. . .....+.|+..
T Consensus 275 D~iilL~-~G~iv~~G~~----~~~~~~f~~~G-~-~~P~~~NpADf~ldv~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 347 (659)
T PLN03211 275 DSVLVLS-EGRCLFFGKG----SDAMAYFESVG-F-SPSFPMNPADFLLDLANGVCQTDGVSEREKPNVKQSLVASYNTL 347 (659)
T ss_pred ceEEEec-CCcEEEECCH----HHHHHHHHHCC-C-CCCCCCCHHHHHHHHcCccccCCCccccccchHHHHHHHHHHhh
Confidence 9999998 4899999997 57899999994 4 58999999999999976432100 0 01122334321
Q ss_pred HHHHHHHHHHHh--hCC-CCC-----CCCCCC-CCCccCchhHHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHHHHHH
Q 000979 895 DLYRRNKALIED--LSR-PPP-----GSKDLY-FPTQFSQSSWIQFVACLWKQHWSYWRNPPYTAVRFFFTAFIALLFGS 965 (1202)
Q Consensus 895 ~~~~~~~~~~~~--~~~-~~~-----~~~~~~-~~~~~~~~~~~q~~~l~~R~~~~~~R~~~~~~~~~~~~~~~~l~~g~ 965 (1202)
. .++.....+. ... ... ..+... ....+..+||+|+.+|++|++++ |||+.+...|+++++++|+++|+
T Consensus 348 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~~~L~~R~~~~-~r~~~~~~~r~~~~i~~~ll~G~ 425 (659)
T PLN03211 348 L-APKVKAAIEMSHFPQANARFVGSASTKEHRSSDRISISTWFNQFSILLQRSLKE-RKHESFNTLRVFQVIAAALLAGL 425 (659)
T ss_pred c-cHHHHHHHhhhhhhcchhhhhhcccccccccCCCccCCCHHHHHHHHHHHHHHH-HhCcHHHHHHHHHHHHHHHHHHH
Confidence 1 1111111110 000 000 000000 11234578999999999999998 89999999999999999999999
Q ss_pred HhhcCCCCCCChhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHhhHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHh
Q 000979 966 LFWDLGGRTKRNQDLFNAMGSMFTAVLFLGVQYCSSVQPIVSVERTVFYREKAAGMYAGIPWALAQVMIEIPYILVQSVV 1045 (1202)
Q Consensus 966 ~f~~~~~~~~~~~~~~~~~g~lf~~~~~~~~~~~~~~~~~~~~er~v~~rE~~~~~Y~~~~y~~a~~~~~~p~~~~~~~~ 1045 (1202)
+||+++ ..++++|.|++||++++.++.+++..++.|+.||++|+||+.+|+|++++|++|++++|+|+.++.+++
T Consensus 426 lf~~~~-----~~~~~~r~g~lff~~~~~~~~~~~~~~~~f~~er~v~~rE~~~~~Y~~~~Y~la~~l~elP~~~~~~~i 500 (659)
T PLN03211 426 MWWHSD-----FRDVQDRLGLLFFISIFWGVFPSFNSVFVFPQERAIFVKERASGMYTLSSYFMARIVGDLPMELILPTI 500 (659)
T ss_pred HHhcCC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 999974 467899999999998888888777788999999999999999999999999999999999999999999
Q ss_pred hhhhhccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhccCCcCCCCcchHhHHh
Q 000979 1046 YGAIVYAMIGFEWTAAKFFWYIFFMYFTLLFFTFYGMMAVALTPNHHIAAIVSTLFYGLWNVFSGFIIPRPRIPIWWRWY 1125 (1202)
Q Consensus 1046 ~~~i~Y~~~gl~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~lf~G~~i~~~~ip~~~~w~ 1125 (1202)
|++|+|||+||++++++||+|++++++..++++++|+++++++|+..+|+.+++++++++++|+||+++ +||+||+|+
T Consensus 501 f~~i~Y~m~Gl~~~~~~F~~f~li~~l~~~~~~s~g~~i~a~~~~~~~a~~~~~~~~~~~~lfsGf~i~--~ip~~~~W~ 578 (659)
T PLN03211 501 FLTVTYWMAGLKPELGAFLLTLLVLLGYVLVSQGLGLALGAAIMDAKKASTIVTVTMLAFVLTGGFYVH--KLPSCMAWI 578 (659)
T ss_pred HHhheeEcCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhhhHh--hchHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999997 799999999
Q ss_pred HhhcHHHHHHHHHHHHHhCCCc-----ccccCC-C--CCHHHHHHhhcCCCccchhHHHHHHHHHHHHHHHHHHHHHHhh
Q 000979 1126 YWANPIAWTLYGLVASQFGDMD-----DKKMDT-G--ETVKQFLKDYFDFKHDFLGVVAAVLVVFAVLFGFLFALGIKMF 1197 (1202)
Q Consensus 1126 ~~~sp~~y~~~~l~~nef~~~~-----~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~l~~~ 1197 (1202)
+|+||++|+|+|++.|||++.+ .+|... + .....++ ...++.+...|.++++|++|+++|+++++++|+++
T Consensus 579 ~ylS~~~y~~eal~~nef~~~~~~~~~~~C~~~~~~~~~~c~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~L~~~ 657 (659)
T PLN03211 579 KYISTTFYSYRLLINVQYGEGKRISSLLGCSLPHGSDRASCKFV-EEDVAGQISPATSVSVLIFMFVGYRLLAYLALRRI 657 (659)
T ss_pred HHhCHHHHHHHHHHHHhcCCccccccccCCCCcccCCCCCCccc-hhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999998653 245321 0 1111222 23344455689999999999999999999999988
Q ss_pred cc
Q 000979 1198 NF 1199 (1202)
Q Consensus 1198 ~~ 1199 (1202)
||
T Consensus 658 ~~ 659 (659)
T PLN03211 658 KH 659 (659)
T ss_pred cC
Confidence 76
|
|
| >TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-91 Score=926.22 Aligned_cols=589 Identities=24% Similarity=0.392 Sum_probs=504.9
Q ss_pred CCceeEEeeeEEEEecCchh-------------h-h-----cccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHH
Q 000979 600 EPHSLTFDEVVYSVDMPEEM-------------K-V-----QGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMD 660 (1202)
Q Consensus 600 ~~~~~~~~~~~~~~~~~~~~-------------~-~-----~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~ 660 (1202)
....+.|+|++......+.. . . .+..+.++++|+|||+.+++||+++|+||||||||||||
T Consensus 26 ~~~~v~~~~l~v~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKSTLLk 105 (1394)
T TIGR00956 26 YKLGVAYKNLSAYGVAADSDYQPTFPNALLKILTRGFRKLKKFRDTKTFDILKPMDGLIKPGELTVVLGRPGSGCSTLLK 105 (1394)
T ss_pred CeeeEEEECCEEEEEeccccccCchHHHHHHHHHHHHHHhcccCCCCcceeeeCCEEEEECCEEEEEECCCCCCHHHHHH
Confidence 45679999999876321110 0 0 012234578999999999999999999999999999999
Q ss_pred HHhCCCCC--ceEEEEEEEcCccCCc--ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCC----CCCHHHHHH-HH
Q 000979 661 VLAGRKTG--GYITGNITISGYPKKQ--ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSP----EVDSETRKM-FI 731 (1202)
Q Consensus 661 ~l~g~~~~--~~~~G~i~~~g~~~~~--~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~----~~~~~~~~~-~~ 731 (1202)
+|+|+..+ .+.+|+|.+||.+... ...++.++||+|+|.+++.+||+||+.|++.++.+. ..+.+++++ .+
T Consensus 106 ~LaG~~~~~~~~~~G~I~~~G~~~~~~~~~~r~~i~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~ 185 (1394)
T TIGR00956 106 TIASNTDGFHIGVEGVITYDGITPEEIKKHYRGDVVYNAETDVHFPHLTVGETLDFAARCKTPQNRPDGVSREEYAKHIA 185 (1394)
T ss_pred HHhCCCCCCCCCceeEEEECCEehHHHHhhcCceeEEeccccccCCCCCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHH
Confidence 99998532 2468999999987643 234567999999999999999999999998877542 233444333 35
Q ss_pred HHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEE
Q 000979 732 DEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVC 810 (1202)
Q Consensus 732 ~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~ 810 (1202)
+++++.+||.+++|+.+|+..+++|||||||||+||++|+.+|+||+|||||+|||+.++..+++.|++++++ |+|||+
T Consensus 186 ~~~l~~lgL~~~~~t~vg~~~~~~LSGGerkRvsIA~aL~~~p~vlllDEPTsgLD~~~~~~i~~~L~~la~~~g~tvii 265 (1394)
T TIGR00956 186 DVYMATYGLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLGGAKIQCWDNATRGLDSATALEFIRALKTSANILDTTPLV 265 (1394)
T ss_pred HHHHHHcCcccccCceeCCCcCCCCCcccchHHHHHHHHHhCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHHhcCCEEEE
Confidence 6789999999999999998888999999999999999999999999999999999999999999999999864 999999
Q ss_pred EecCCCHHHHHhcceEEEEecCCEEEEEcCCCccchhHHHHHhhCCCcccCCCCCCccceEEEcccchhhh---------
Q 000979 811 TIHQPSIDIFEAFDELFLMKRGGQEIYVGPLGRHSCHLISYFEAIPGVQKIKDGYNPATWMLEVSAASQEL--------- 881 (1202)
Q Consensus 811 ~~H~~~~~~~~~~d~v~~l~~gG~~~~~G~~~~~~~~~~~~f~~~~~~~~~~~~~npa~~~~~~~~~~~~~--------- 881 (1202)
++|||+.+++++||++++|++ |+++|+|++ +++.+||+++ |+ +||++.|||||++|+++.+++.
T Consensus 266 ~~Hq~~~~i~~l~D~v~~L~~-G~iv~~G~~----~~~~~yF~~l-G~-~~p~~~n~aDfl~~~~~~~~~~~~~~~e~~~ 338 (1394)
T TIGR00956 266 AIYQCSQDAYELFDKVIVLYE-GYQIYFGPA----DKAKQYFEKM-GF-KCPDRQTTADFLTSLTSPAERQIKPGYEKKV 338 (1394)
T ss_pred EecCCCHHHHHhhceEEEEeC-CeEEEECCH----HHHHHHHHHc-CC-CCCCCCChHHHHHhccChhhhhccccccccC
Confidence 999998789999999999985 899999997 5789999999 44 6899999999999997754321
Q ss_pred -hhccchHHHhhhcHHHHHHHHHHHhhCCCC---------------CCCCCCCCCCccCchhHHHHHHHHHHHHHHhhcC
Q 000979 882 -ALGIDFTEHYKRSDLYRRNKALIEDLSRPP---------------PGSKDLYFPTQFSQSSWIQFVACLWKQHWSYWRN 945 (1202)
Q Consensus 882 -~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~q~~~l~~R~~~~~~R~ 945 (1202)
....++++.|++|+.+++..+.++...... ...+.....+.+..|+|+|+++|++|++++.|||
T Consensus 339 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~~~l~~R~~~~~~Rd 418 (1394)
T TIGR00956 339 PRTPQEFETYWRNSPEYAQLMKEIDEYLDRCSESDTKEAYRESHVAKQSKRTRPSSPYTVSFSMQVKYCLARNFLRMKGN 418 (1394)
T ss_pred CCCHHHHHHHHHcCHHHHHHHHHHHHHhhhccchhhHHHHHHHHHhhhcccccCCCCCcCCHHHHHHHHHHHHHHHHhcC
Confidence 112368889999988776555443321110 0001112234678899999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHhhHHHHHHhcCCCCChH
Q 000979 946 PPYTAVRFFFTAFIALLFGSLFWDLGGRTKRNQDLFNAMGSMFTAVLFLGVQYCSSVQPIVSVERTVFYREKAAGMYAGI 1025 (1202)
Q Consensus 946 ~~~~~~~~~~~~~~~l~~g~~f~~~~~~~~~~~~~~~~~g~lf~~~~~~~~~~~~~~~~~~~~er~v~~rE~~~~~Y~~~ 1025 (1202)
|.+++.|+++++++|+++|++||++++ +.+++++|.|++|+++++.++.++.++. .+..||+||+||+.+++|+++
T Consensus 419 ~~~~~~r~~~~ii~~li~G~~F~~~~~---~~~~~~~r~g~lf~~~~~~~~~~~~~i~-~~~~eR~i~~re~~~~~Y~~~ 494 (1394)
T TIGR00956 419 PSFTLFMVFGNIIMALILSSVFYNLPK---NTSDFYSRGGALFFAILFNAFSSLLEIA-SMYEARPIVEKHRKYALYHPS 494 (1394)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCC---CchhHHHHHHHHHHHHHHHHHHHHHHHH-HHHhcCcceeeeccccccCHH
Confidence 999999999999999999999999986 3567899999999999999998877764 456799999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 000979 1026 PWALAQVMIEIPYILVQSVVYGAIVYAMIGFEWTAAKFFWYIFFMYFTLLFFTFYGMMAVALTPNHHIAAIVSTLFYGLW 1105 (1202)
Q Consensus 1026 ~y~~a~~~~~~p~~~~~~~~~~~i~Y~~~gl~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 1105 (1202)
+|++|++++|+|+.++.+++|++|+|||+||++++++||+|+++++++.++++++++++++++|+..+|+.+++++++++
T Consensus 495 ay~la~~l~~iP~~~~~~~if~~i~Yfm~gl~~~~~~Ff~f~l~~~l~~~~~~~~~~~i~a~~~~~~~A~~~~~~~~~~~ 574 (1394)
T TIGR00956 495 ADAIASIISEIPFKIIESVVFNIILYFMVNFRRTAGRFFFYLLILFICTLAMSHLFRSIGAVTKTLSEAMTPAAILLLAL 574 (1394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhEEcCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhccCCcCCCCcchHhHHhHhhcHHHHHHHHHHHHHhCCCcccccC---C---------------------C---CCHH
Q 000979 1106 NVFSGFIIPRPRIPIWWRWYYWANPIAWTLYGLVASQFGDMDDKKMD---T---------------------G---ETVK 1158 (1202)
Q Consensus 1106 ~lf~G~~i~~~~ip~~~~w~~~~sp~~y~~~~l~~nef~~~~~~~~~---~---------------------~---~~~~ 1158 (1202)
++|+||++|.++||+||+|++|+||++|+|+|++.|||++.+++|.. . | .+|.
T Consensus 575 ~lf~Gf~i~~~~mp~~~~W~~yisp~~yafeal~~nef~~~~~~C~~~~p~g~~y~~~~~~~~~C~~~g~~~g~~~~~G~ 654 (1394)
T TIGR00956 575 SIYTGFAIPRPSMLGWSKWIYYVNPLAYAFESLMVNEFHGRRFECSQYVPSGGGYDNLGVTNKVCTVVGAEPGQDYVDGD 654 (1394)
T ss_pred HHHcccccChhhccHHHHHHHHcCHHHHHHHHHHHhhhcCCcccccccccCCCCCCCCCccCccccCCCCcCCcccccHH
Confidence 99999999999999999999999999999999999999998887741 0 0 1567
Q ss_pred HHHHhhcCCCccchhHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 000979 1159 QFLKDYFDFKHDFLGVVAAVLVVFAVLFGFLFALGIKMFNF 1199 (1202)
Q Consensus 1159 ~~~~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~l~~~~~ 1199 (1202)
+|+...||++++|+|+|++||++|+++|+++++++++++++
T Consensus 655 ~~L~~~~~~~~~~~w~n~gil~~~~v~f~~~~~l~l~~~~~ 695 (1394)
T TIGR00956 655 DYLKLSFQYYNSHKWRNFGIIIGFTVFFFFVYILLTEFNKG 695 (1394)
T ss_pred HHHHhcCCcccchhhHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 88887899999999999999999999999999999999874
|
|
| >PLN03140 ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-90 Score=910.18 Aligned_cols=592 Identities=24% Similarity=0.398 Sum_probs=496.0
Q ss_pred CCCceeEEeeeEEEEecCch-------h--------hhc---c---cccCceEEeecceEEEeCCeEEEEEcCCCCCHHH
Q 000979 599 FEPHSLTFDEVVYSVDMPEE-------M--------KVQ---G---VLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTT 657 (1202)
Q Consensus 599 ~~~~~~~~~~~~~~~~~~~~-------~--------~~~---~---~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKST 657 (1202)
.+..++.|+|+++....... . ... + ..+.++++|+|||+.++|||+++|+|||||||||
T Consensus 127 ~~~~~v~~~~l~v~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~k~~~~~IL~~vs~~i~~Ge~~~llGpnGSGKST 206 (1470)
T PLN03140 127 LPTVEVRFEHLTVEADCYIGSRALPTLPNAARNIAESALGMLGINLAKKTKLTILKDASGIIKPSRMTLLLGPPSSGKTT 206 (1470)
T ss_pred CCCCeeEEeCCEEEEEecCCcccCCcHHHHHHHHHHHHHHHhccccCCCccceeccCCeEEEeCCeEEEEEcCCCCCHHH
Confidence 34678999999987651110 0 000 1 1224578999999999999999999999999999
Q ss_pred HHHHHhCCCCCc-eEEEEEEEcCccCCcccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCC-------CCCHHHH--
Q 000979 658 LMDVLAGRKTGG-YITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSP-------EVDSETR-- 727 (1202)
Q Consensus 658 Ll~~l~g~~~~~-~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~-------~~~~~~~-- 727 (1202)
|||+|+|+.++. ..+|+|.+||++..+...++.++||+|+|.+++.+||+||+.|+++++.+. +...+++
T Consensus 207 LLk~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV~EtL~f~a~~~~~~~~~~~~~~~~~~ek~~ 286 (1470)
T PLN03140 207 LLLALAGKLDPSLKVSGEITYNGYRLNEFVPRKTSAYISQNDVHVGVMTVKETLDFSARCQGVGTRYDLLSELARREKDA 286 (1470)
T ss_pred HHHHHhCCCCCCCcceeEEEECCEechhhcccceeEEecccccCCCcCcHHHHHHHHHHhcCCCCcccchhhcCHHHHhc
Confidence 999999986532 458999999998754444678999999999999999999999998765321 1111111
Q ss_pred ----------------------HHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCC
Q 000979 728 ----------------------KMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 785 (1202)
Q Consensus 728 ----------------------~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~illlDEPtsg 785 (1202)
+..++++++.+||.+++|+.+|+..+++|||||||||+||++|+.+|++|||||||+|
T Consensus 287 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg~~~~rglSGGerkRVsia~aL~~~p~vlllDEPTsG 366 (1470)
T PLN03140 287 GIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMIRGISGGQKKRVTTGEMIVGPTKTLFMDEISTG 366 (1470)
T ss_pred cCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeCCccccCCCcccceeeeehhhhcCCCcEEEEeCCCcC
Confidence 1235789999999999999999988899999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHh-CCCEEEEEecCCCHHHHHhcceEEEEecCCEEEEEcCCCccchhHHHHHhhCCCcccCCCC
Q 000979 786 LDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLGRHSCHLISYFEAIPGVQKIKDG 864 (1202)
Q Consensus 786 LD~~~~~~v~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G~~~~~~~~~~~~f~~~~~~~~~~~~ 864 (1202)
||+.++.++++.|+++++ .|+|+|+++|||+.+++++||++++|++ |+++|+||+ +++.+||+++ |+ +||++
T Consensus 367 LDs~t~~~i~~~Lr~la~~~g~Tviis~Hqp~~~i~~lfD~vilL~~-G~ivy~G~~----~~~~~yF~~l-Gf-~cP~~ 439 (1470)
T PLN03140 367 LDSSTTYQIVKCLQQIVHLTEATVLMSLLQPAPETFDLFDDIILLSE-GQIVYQGPR----DHILEFFESC-GF-KCPER 439 (1470)
T ss_pred ccHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHHhheEEEeeC-ceEEEeCCH----HHHHHHHHHc-CC-CCCCC
Confidence 999999999999999976 4899999999998889999999999985 899999997 5789999999 45 69999
Q ss_pred CCccceEEEcccchhh-h-----------hhccchHHHhhhcHHHHHHHHHHHhhCCCCCCCCCCCCCCccCchhHHHHH
Q 000979 865 YNPATWMLEVSAASQE-L-----------ALGIDFTEHYKRSDLYRRNKALIEDLSRPPPGSKDLYFPTQFSQSSWIQFV 932 (1202)
Q Consensus 865 ~npa~~~~~~~~~~~~-~-----------~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~ 932 (1202)
.|||||++|+++..++ . ....++++.|++|+.+++..+.++...............++|..+++.|++
T Consensus 440 ~n~ADFl~~v~s~~~~~~~~~~~~~p~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~s~~~q~~ 519 (1470)
T PLN03140 440 KGTADFLQEVTSKKDQEQYWADRNKPYRYISVSEFAERFKSFHVGMQLENELSVPFDKSQSHKAALVFSKYSVPKMELLK 519 (1470)
T ss_pred CChHHHHHHhcCchhhhhhhhccCCccccCCHHHHHHHHHhcHHHHHHHHHHhhhhhhhhcccccccCCCCcCCHHHHHH
Confidence 9999999999875432 1 012357888998887765544332211000001111123458899999999
Q ss_pred HHHHHHHHHhhcChhhHHHHHHHHHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHhhHH
Q 000979 933 ACLWKQHWSYWRNPPYTAVRFFFTAFIALLFGSLFWDLGGRTKRNQDLFNAMGSMFTAVLFLGVQYCSSVQPIVSVERTV 1012 (1202)
Q Consensus 933 ~l~~R~~~~~~R~~~~~~~~~~~~~~~~l~~g~~f~~~~~~~~~~~~~~~~~g~lf~~~~~~~~~~~~~~~~~~~~er~v 1012 (1202)
.|++|+++.++||+..+..|+++.+++|+++|++||+++.+..+..+.+.+.|++||++++..+.++.++ +.++.||+|
T Consensus 520 ~~~~R~~~~~~Rd~~~~~~r~~~~ii~ali~GsvF~~~~~~~~~~~~~~~~~g~lff~~l~~~~~~~~~l-~~~~~~r~v 598 (1470)
T PLN03140 520 ACWDKEWLLMKRNAFVYVFKTVQIIIVAAIASTVFLRTEMHTRNEEDGALYIGALLFSMIINMFNGFAEL-ALMIQRLPV 598 (1470)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHH-HHHHhccch
Confidence 9999999999999999999999999999999999999986544445567788999999888888776664 667789999
Q ss_pred HHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHH
Q 000979 1013 FYREKAAGMYAGIPWALAQVMIEIPYILVQSVVYGAIVYAMIGFEWTAAKFFWYIFFMYFTLLFFTFYGMMAVALTPNHH 1092 (1202)
Q Consensus 1013 ~~rE~~~~~Y~~~~y~~a~~~~~~p~~~~~~~~~~~i~Y~~~gl~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1092 (1202)
|+||+.+++|++++|++|++++++|+.++.+++|++|+|||+||++++++||.|+++++++.++++++++++++++|+..
T Consensus 599 f~ker~~~~Y~~~ay~la~~l~~iP~~~i~~~if~~I~Y~m~Gl~~~~~~Ff~f~l~~~l~~~~~~~l~~~i~a~~~~~~ 678 (1470)
T PLN03140 599 FYKQRDLLFHPPWTFTLPTFLLGIPISIIESVVWVVITYYSIGFAPEASRFFKQLLLVFLIQQMAAGIFRLIASVCRTMI 678 (1470)
T ss_pred hHHhhhccCcCHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhccCCcCCCCcchHhHHhHhhcHHHHHHHHHHHHHhCCCccc---ccCCCC-CHHHHHHhhcCCC
Q 000979 1093 IAAIVSTLFYGLWNVFSGFIIPRPRIPIWWRWYYWANPIAWTLYGLVASQFGDMDDK---KMDTGE-TVKQFLKDYFDFK 1168 (1202)
Q Consensus 1093 ~a~~~~~~~~~~~~lf~G~~i~~~~ip~~~~w~~~~sp~~y~~~~l~~nef~~~~~~---~~~~~~-~~~~~~~~~~~~~ 1168 (1202)
+|+.+++++++++++|+||++|.++||+||+|++|+||++|+++|++.|||.+..+. |..... +|.+++ +.+|++
T Consensus 679 ~A~~~~~~~~l~~~lf~Gf~i~~~~ip~w~~W~~yisp~~Ya~eal~~NEf~~~~~~~~~~~~~~~~~G~~~L-~~~g~~ 757 (1470)
T PLN03140 679 IANTGGALVLLLVFLLGGFILPKGEIPNWWEWAYWVSPLSYGFNALAVNEMFAPRWMNKMASDNSTRLGTAVL-NIFDVF 757 (1470)
T ss_pred HHHHHHHHHHHHHHHHccceechHhCchHHHHHHHhCHHHHHHHHHHHHhccCccccCcccCCCCcccHHHHH-HhcCcC
Confidence 999999999999999999999999999999999999999999999999999776543 111122 445555 789997
Q ss_pred cc--chhHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 000979 1169 HD--FLGVVAAVLVVFAVLFGFLFALGIKMFNF 1199 (1202)
Q Consensus 1169 ~~--~~~~~~~il~~~~~~~~~~~~~~l~~~~~ 1199 (1202)
.+ |.|+++++|+||+++|++++++++++++.
T Consensus 758 ~~~~~~w~~~~iL~~~~v~f~~l~~l~L~~~~~ 790 (1470)
T PLN03140 758 TDKNWYWIGVGALLGFTILFNVLFTLALTYLNP 790 (1470)
T ss_pred ccccchhhhHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 54 67999999999999999999999999873
|
|
| >KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-84 Score=793.23 Aligned_cols=564 Identities=26% Similarity=0.467 Sum_probs=499.1
Q ss_pred CceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCc-eEEEEEEEcCccCCcccccceEEEeecCCCCCCCCC
Q 000979 627 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG-YITGNITISGYPKKQETFARISGYCEQNDIHSPFVT 705 (1202)
Q Consensus 627 ~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~-~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~lT 705 (1202)
.+..+|+|+|+-++|||++.++||+||||||||++|+|..+.. ...|+|.+||++.++...++.++|++|+|.|+|.||
T Consensus 126 ~~~~il~~~sg~~~pg~m~lvLG~pgsG~ttllkal~g~~~~~~~~~~~isy~G~~~~e~~~~~~~aY~~e~DvH~p~lT 205 (1391)
T KOG0065|consen 126 KKIQILKDISGIIKPGEMTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLKEFVPKKTVAYNSEQDVHFPELT 205 (1391)
T ss_pred ccceeecCcceeEcCCceEEEecCCCCchHHHHHHHhCCCcccccCCCceeECCCcccccccCceEEeccccccccceeE
Confidence 4467999999999999999999999999999999999965432 235799999998776444788999999999999999
Q ss_pred HHHHHHHHHHccCCCC----CCHHHHHH-HHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEe
Q 000979 706 IYESLLFSAWLRLSPE----VDSETRKM-FIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMD 780 (1202)
Q Consensus 706 v~e~l~~~~~~~~~~~----~~~~~~~~-~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~illlD 780 (1202)
|+|+|.|+++++.+.. .++.++.+ ..+.+++.+||.+++|+++|+...+|+||||||||+||.+++.+|+++++|
T Consensus 206 VreTldFa~rck~~~~r~~~~~R~e~~~~~~d~~lkilGL~~~~dT~VGnd~~RGvSGGerKRvsi~E~~v~~~~~~~~D 285 (1391)
T KOG0065|consen 206 VRETLDFAARCKGPGSRYDEVSRREKLAAMTDYLLKILGLDHCADTLVGNDMVRGVSGGERKRVSIGEMLVGPASILFWD 285 (1391)
T ss_pred EeehhhHHHhccCCccccccccHHHHHHHHHHHHHHHhCchhhccceecccccccccCcccceeeeeeeeecCcceeeee
Confidence 9999999999987632 22222222 567899999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhcceEEEEecCCEEEEEcCCCccchhHHHHHhhCCCcc
Q 000979 781 EPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLGRHSCHLISYFEAIPGVQ 859 (1202)
Q Consensus 781 EPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G~~~~~~~~~~~~f~~~~~~~ 859 (1202)
|+|.|||+.++.++++.||++++. +.|++++.|||+.+++++||+|++|.+ |+++|+||. +++++||+++ |+
T Consensus 286 e~t~GLDSsTal~iik~lr~~a~~~~~t~~vsi~Q~s~~~~~lFD~v~lL~e-G~~iy~Gp~----d~~~~yFe~~-Gf- 358 (1391)
T KOG0065|consen 286 EITRGLDSSTAFQIIKALRQLAHITGATALVSILQPSPEIYDLFDDVILLSE-GYQIYQGPR----DEVLPYFEDM-GF- 358 (1391)
T ss_pred cccccccHHHHHHHHHHHHHHHhhhcceEEEEeccCChHHHHhhhheeeeec-cceEEeccH----HHHHHHHHhc-Cc-
Confidence 999999999999999999999865 899999999999999999999999996 899999998 5689999998 45
Q ss_pred cCCCCCCccceEEEcccchhhhh-----------hc-cchHHHhhhcHHHHHHHHHHHhhCCCCCCCCCCCCCCccCchh
Q 000979 860 KIKDGYNPATWMLEVSAASQELA-----------LG-IDFTEHYKRSDLYRRNKALIEDLSRPPPGSKDLYFPTQFSQSS 927 (1202)
Q Consensus 860 ~~~~~~npa~~~~~~~~~~~~~~-----------~~-~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 927 (1202)
.||++.++|||+.++++..++.. .. .++.+.|..++.+++....++.........+......+|..++
T Consensus 359 ~cP~r~~~ADfLt~vts~k~~~~~~~~~~~~~~~~~~~ef~~~~~~s~~~~~l~~~l~~~~~~~k~~~~al~s~~y~v~~ 438 (1391)
T KOG0065|consen 359 KCPPRKGTADFLTEVTSKKDQEQYWNKRSKPYPYTSVSEFAEYFLNSEDYAKLKKELSKPYDKSKKHKAALVSSKYSVPY 438 (1391)
T ss_pred cCCCccCHHHHHHHhhcCccccccccccCCCcccCCHHHHHHHHhcchhhHHHHHHhcchhhhhhccchhhcCCceeccH
Confidence 68999999999999987322110 11 4688899999988876555443222222223333456789999
Q ss_pred HHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHHHHHHHHHHHhhhhhhhHH
Q 000979 928 WIQFVACLWKQHWSYWRNPPYTAVRFFFTAFIALLFGSLFWDLGGRTKRNQDLFNAMGSMFTAVLFLGVQYCSSVQPIVS 1007 (1202)
Q Consensus 928 ~~q~~~l~~R~~~~~~R~~~~~~~~~~~~~~~~l~~g~~f~~~~~~~~~~~~~~~~~g~lf~~~~~~~~~~~~~~~~~~~ 1007 (1202)
|.|++.|+.|.++.+.||..++..++++.+++|+++|++||+.+. .+..+...|.|++||++++..++.+.++. ...
T Consensus 439 ~~qvk~c~~R~f~l~k~n~~~~~~~~~~~~i~ali~gslF~~~~~--~t~~~~~~~~~~lffsll~~~f~~laEi~-~~~ 515 (1391)
T KOG0065|consen 439 WEQVKACTIREFLLMKRNYFYYVFKTVQLVIQALITGSLFYRTPM--STTSGGYSRGGALFFALLFNLFNGLAEIA-LTF 515 (1391)
T ss_pred HHHHHHHHHHHHHHHhCCceEEEhHHHHHHHHHHHHhhheeeccC--cccccchhhhhHHHHHHHHHHHHhHHHHH-HHH
Confidence 999999999999999999999999999999999999999999982 45677889999999999999999888874 455
Q ss_pred HhhHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000979 1008 VERTVFYREKAAGMYAGIPWALAQVMIEIPYILVQSVVYGAIVYAMIGFEWTAAKFFWYIFFMYFTLLFFTFYGMMAVAL 1087 (1202)
Q Consensus 1008 ~er~v~~rE~~~~~Y~~~~y~~a~~~~~~p~~~~~~~~~~~i~Y~~~gl~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~ 1087 (1202)
+.||||+|||...+|++++|.++.++.++|+.++..++|.+|+||++||++++++||.+++++++...|+++++++++++
T Consensus 516 ~~~pv~~Khr~~~fY~p~A~al~s~l~~~P~~~i~~~vf~iI~Yfl~gl~~~A~rFF~~fL~lf~~~~~~s~lFr~ia~l 595 (1391)
T KOG0065|consen 516 QRLPVFYKHRDLSFYPPWAEALASTLLKIPSSFIESVVFVIITYFLIGLKRNAGRFFIQFLFLFLCQFCMSGLFRFIASL 595 (1391)
T ss_pred hhcchHHHhhcccccChHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHHHHHhccCCcCCCCcchHhHHhHhhcHHHHHHHHHHHHHhCCCcccccCCCC------------
Q 000979 1088 TPNHHIAAIVSTLFYGLWNVFSGFIIPRPRIPIWWRWYYWANPIAWTLYGLVASQFGDMDDKKMDTGE------------ 1155 (1202)
Q Consensus 1088 ~~~~~~a~~~~~~~~~~~~lf~G~~i~~~~ip~~~~w~~~~sp~~y~~~~l~~nef~~~~~~~~~~~~------------ 1155 (1202)
+++...|+.++++.+++..+++||+||.++||+||+|++|+||+.|++|+++.|||++.+.+|.+.|+
T Consensus 596 ~~t~~~An~~g~~~~L~i~m~~Gf~Ip~~~m~~W~~Wi~yinPl~Y~fesl~~NEF~~~~~~c~p~gp~y~n~~~~~~~c 675 (1391)
T KOG0065|consen 596 SRTLSIANLIGGILLLVLFMYGGFVIPKKDMPPWFRWIAYINPLMYAFESLMSNEFHGRRWPCSPSGPAYDNISIENKVC 675 (1391)
T ss_pred cchHHHHhhHhHHHHHHHHHHcceeeeccccchHHHHHHHHCHHHHHHHHHHHhhhhcccCCCCCCCCcccccccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999873111
Q ss_pred ------------CHHHHHHhhcCCCccchhHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 000979 1156 ------------TVKQFLKDYFDFKHDFLGVVAAVLVVFAVLFGFLFALGIKMFNFQ 1200 (1202)
Q Consensus 1156 ------------~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~l~~~~~~ 1200 (1202)
.+.+|++..|++++.|.|+|+||++||.++|.++..+++.|+|..
T Consensus 676 ~~~~~~~G~~~v~g~~~l~~~~~y~~~~~Wr~~gillgf~v~f~~~~~ia~~yl~p~ 732 (1391)
T KOG0065|consen 676 AATGATLGNDYVSGRDYLKVQYQYEYKWYWRNFGILLGFTVFFNFVFLIALEYLKPL 732 (1391)
T ss_pred hhhccccCceEEecccccccccccccceeEeehhHHHHHHHHHHHHHHHHHHhcCcc
Confidence 356778888889999999999999999999999999999999854
|
|
| >KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-80 Score=757.75 Aligned_cols=696 Identities=21% Similarity=0.248 Sum_probs=443.4
Q ss_pred HHHHHHhCCcccccccccCCcccccCccccchhhHHHHHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHhHhCCCEEEE
Q 000979 48 DYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVI 127 (1202)
Q Consensus 48 ~~il~~lgL~~~~dT~VG~~~~~gLSGGQKqRvsIAraLv~~P~ILlLDEpTSGLDs~sa~~vv~~L~~~a~~~~tTiIi 127 (1202)
+..-.+..|++..||+|| +++.+|||||||||||||||++||+||+|||||||||+.||..|+++|++ +++++||+||
T Consensus 467 na~~fi~~lp~g~~T~vg-e~g~qLSGGQKQRIAIARalv~~P~ILLLDEaTSaLD~~se~~Vq~ALd~-~~~grTTivV 544 (1228)
T KOG0055|consen 467 NAHDFILKLPDGYDTLVG-ERGVQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESERVVQEALDK-ASKGRTTIVV 544 (1228)
T ss_pred cHHHHHHhhHHhhccccc-CCCCCCChHHHHHHHHHHHHHhCCCEEEecCcccccCHHHHHHHHHHHHH-hhcCCeEEEE
Confidence 346678899999999999 77788999999999999999999999999999999999999888888876 5679999999
Q ss_pred EecCCChHHHhhhcceEEecCCcEEEEcCcchHHHHHHhCCCCCCCCCChhhHHHHhcCchhhhhhhhhcCCCCccCCHH
Q 000979 128 SLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLEFFASMGFRCPKRKGVADFLQEVTSRKDQRQYWAHKEKPYRFVTVQ 207 (1202)
Q Consensus 128 aihQp~~s~~~~fD~IvvL~~G~vvy~G~~~el~~~F~~lG~~~p~~~n~ad~l~~v~~~~~~~~~~~~~~~~~~~~~~~ 207 (1202)
| ||++|++++|+|+||++|++||.|+|+||++. .+.+..+..........+. .+...
T Consensus 545 a---HRLStIrnaD~I~v~~~G~IvE~G~h~ELi~~-----------~G~Y~~lv~~Q~~~~~~~~-~~~~~-------- 601 (1228)
T KOG0055|consen 545 A---HRLSTIRNADKIAVMEEGKIVEQGTHDELIAL-----------GGIYSSLVRLQELEKAAED-EEEEE-------- 601 (1228)
T ss_pred e---eehhhhhccCEEEEEECCEEEEecCHHHHHhc-----------cchHHHHHHHHhhhhhhhc-ccccc--------
Confidence 9 99999999999999999999999999999962 1333333322211111000 00000
Q ss_pred HHHHHHHhchhhhhhhhhhcCCCCcccc--cccccccccccCcHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHH
Q 000979 208 EFAEAFQSFHVGQKISDELRTPFDKSKS--HRAALTTETYGVGKRELLKANISRELLLMKRNSFVYIFKLIQIAFVAVVY 285 (1202)
Q Consensus 208 ~~~~~~~~s~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~r~~~~~~~~~~~~ii~~~~~ 285 (1202)
+.......+................... ............ ........++|.++.++++|++++++.+.+++.|..+
T Consensus 602 ~~~~~~~~s~~~s~~~~~~~~~~~~~~~~~~~~~~e~~~~~~-~~~~~~~s~~~i~k~~~pe~~~l~lG~i~a~i~G~~~ 680 (1228)
T KOG0055|consen 602 SLKEERSRSLKSSSSSPSLSRGSNRSNLLSVKPEGEDPEEPV-SEEDEKVSFWRIFKLNKPEWPYLLLGSLGAAIRGATY 680 (1228)
T ss_pred chhhhhhhccccccccccccCCcccccccccccccccccccc-ccccccccHHHHHHhccchhHHHHHHHHHHHHhhhhH
Confidence 0000000000000000000000000000 000000000000 0001234567888889999999999888888777655
Q ss_pred HH-------H---HhcccCCCCccccccchhhHHHHHHHHHHHhhH--HHHHHhhhcchhHHHhhcCCCCChhhHHHHHH
Q 000979 286 MT-------L---FLRTKMHKDTVTDGGIFAGATFFAITMVNFNGF--SEISMTIAKLPVFYKQRDFRFFPPWAYAIPSW 353 (1202)
Q Consensus 286 g~-------~---f~~~~~~~~~~~~~~~~~g~~f~~~~~~~~~~~--~~~~~~~~~~~v~~rer~~~~y~~~~y~la~~ 353 (1202)
.. + |+..+ .+........++++|..+....+... +..........+..|-|...| +.
T Consensus 681 P~fa~~~s~~~~~f~~~~--~~~~~~~~~~~al~f~~l~~~~~i~~~~q~~~f~~~ge~Lt~R~R~~~F---------~~ 749 (1228)
T KOG0055|consen 681 PLFAYVFSQVLEAFYPPD--DDELKREVRAWALIFLGLGIVSGITNFLQHYFFGIAGEKLTKRLRSMMF---------RA 749 (1228)
T ss_pred HHHHHHHHHHHHHHhCCC--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HH
Confidence 22 1 22111 11222222347777776665544322 222233334444444444432 56
Q ss_pred HHhhhHHHHHHHHHHhhhhhcccccCChhHHHHHHHH-HHHHH----HHHHHHHHHHHHccCChHHHHHHHHHHHHHH--
Q 000979 354 ILKIPVSFLEVAVWVFLSYYVVGYDSNAGRFFKQYAL-LLGVN----QMASALFRFIAVTGRNMVVANTFGSFALLVL-- 426 (1202)
Q Consensus 354 l~~~p~~~~~~~i~~~i~y~~~gl~~~~~~f~~~~~~-~~~~~----~~~~~l~~~i~~~~~~~~ia~~i~~~~~~~~-- 426 (1202)
++.+++.||+.. +++ ++....+.. ...+. .-...+...++++...+.+|+.++|-+.++.
T Consensus 750 ll~qd~~wFD~~------------~ns-g~l~~RLa~Da~~vr~~v~~rl~~vv~~~~~~~~~iiiaf~~~W~lalv~la 816 (1228)
T KOG0055|consen 750 LLRQEVGWFDDP------------ENS-GALSSRLATDASNVRAAVGDRLSLVVQNIAAVIIGIIIAFIYGWRLALVVLA 816 (1228)
T ss_pred HHcCCCcccCCC------------ccc-hHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777777743 555 666666543 11111 1122333444455555666777766443333
Q ss_pred ----HHHhccccCCCCccchhhhhhhhC---HHHHHHHHHHHhhcCCCCcccccCCCCcccHHHHHhhcCc-----cccc
Q 000979 427 ----LSLGGFILSREDIKKWWKWAYWCS---PLTYAQNAIVANEFLGHSWKKFTQDSSETLGVQVLKSRGF-----FAHE 494 (1202)
Q Consensus 427 ----~l~~G~~i~~~~ip~~~~w~~~is---p~~ya~~~~~~~e~~~~~~~~~~~~~~~~~g~~~l~~~~~-----~~~~ 494 (1202)
+.++++... +++.-.+ --.|...+.+++|.+.+--+.. ..+..+.+.+.+.- ....
T Consensus 817 ~~Pll~~~~~~~~--------~~~~~~~~~~~~~~~ea~~iA~eai~NIrTV~----al~~e~~~~~~y~~~l~~p~~~~ 884 (1228)
T KOG0055|consen 817 TFPLLILSGYLQK--------KFLKGFSKDDKKAYEEASKIAIEAVSNIRTVA----ALCAEEKFMELYKEELEKPRKSS 884 (1228)
T ss_pred HHHHHHHHHHHHH--------HHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHH----HHhhHHHHHHHHHHHHHHHHHHH
Confidence 333322221 1111111 0124555556666654311100 00011111111100 0000
Q ss_pred chhHHHHHHHHHHHHHHHHH-HHHHHhccCCCCCCccceeccccccccccccCCcccccccCCCCCCCCCCCCCCccccc
Q 000979 495 YWYWLGLGALFGFVLLLNFA-YTLALTFLDPFEKPRAVITEEIESNEQDDRIGGNVQLSTLGGSSNHNTRSGSTDDIRGQ 573 (1202)
Q Consensus 495 ~~~~~~~~il~g~~~~~~~~-~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 573 (1202)
.......++.+++...+.++ ++++++|.......+.....+.. .+++...+++..+++..++.||..+++
T Consensus 885 ~~~~~i~gl~f~~sqs~~~~~~A~~f~~G~~Li~~g~~~~~~~~---------~vf~~l~~ta~~~~~~~s~~Pd~~ka~ 955 (1228)
T KOG0055|consen 885 FKRGLISGLGFGFSQSLLFFVYALSFWYGARLISNGEMTFEDVF---------RVFMALSFTAMALGQASSYAPDISKAK 955 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhcCCcCHHHHH---------HHHHHHHHHHHHHHHHHhhCcHHHHHH
Confidence 11122235566666655543 66777775433222211111111 123444566666777788999999999
Q ss_pred cccchhhhhhhhhccCCCC--CCCccCCCCceeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCC
Q 000979 574 QSSSQSLSLAEAEASRPKK--KGMVLPFEPHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVS 651 (1202)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~s 651 (1202)
.++..++.+.++++..+.. .+...+...+.++++||+|+||.+|. .+||+|+|+++++|+.+||||||
T Consensus 956 ~Aa~~iF~i~dr~~~i~~~~~~~~~~~~~~G~I~~~~V~F~YPsRP~----------~~Il~~l~l~i~~GqTvALVG~S 1025 (1228)
T KOG0055|consen 956 IAAGSIFEILDRKPTIDPDSTSGGKLPNVKGDIEFRNVSFAYPTRPD----------VPVLNNLSLSIRAGQTVALVGPS 1025 (1228)
T ss_pred HHHHHHHHHhcCCCCCCCCCCCCCccccceeEEEEeeeEeeCCCCCC----------chhhcCCcEEecCCCEEEEECCC
Confidence 9999999998876543332 33334556788999999999997753 45799999999999999999999
Q ss_pred CCCHHHHHHHHhCCCCCceEEEEEEEcCccCCc---ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHH
Q 000979 652 GAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRK 728 (1202)
Q Consensus 652 GaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~ 728 (1202)
||||||.+.+|... +++..|.|.+||.+++. ..+|+++|.|.|+|.+|. .|++||+.|+. .+.+.++
T Consensus 1026 GsGKSTvI~LLeRf--Ydp~~G~V~IDg~dik~lnl~~LR~~i~lVsQEP~LF~-~TIrENI~YG~-----~~vs~~e-- 1095 (1228)
T KOG0055|consen 1026 GSGKSTVISLLERF--YDPDAGKVKIDGVDIKDLNLKWLRKQIGLVSQEPVLFN-GTIRENIAYGS-----EEVSEEE-- 1095 (1228)
T ss_pred CCCHHHHHHHHHHh--cCCCCCeEEECCcccccCCHHHHHHhcceeccCchhhc-ccHHHHHhccC-----CCCCHHH--
Confidence 99999999999654 44779999999998765 457889999999999985 79999999982 1233333
Q ss_pred HHHHHHHHH-------cCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 000979 729 MFIDEVMEL-------VELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT 801 (1202)
Q Consensus 729 ~~~~~~l~~-------l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~ 801 (1202)
+.++++. .+|.+-.||.+|..|. +||||||||+|||||+++||+||||||.||+||+++++.|+++|++.
T Consensus 1096 --Ii~Aak~ANaH~FI~sLP~GyDT~vGerG~-QLSGGQKQRIAIARAilRnPkILLLDEATSALDseSErvVQeALd~a 1172 (1228)
T KOG0055|consen 1096 --IIEAAKLANAHNFISSLPQGYDTRVGERGV-QLSGGQKQRIAIARAILRNPKILLLDEATSALDSESERVVQEALDRA 1172 (1228)
T ss_pred --HHHHHHHhhhHHHHhcCcCcccCccCcccC-cCCchHHHHHHHHHHHHcCCCeeeeeccchhhhhhhHHHHHHHHHHh
Confidence 2233222 3677889999998775 69999999999999999999999999999999999999999999986
Q ss_pred HhCCCEEEEEecCCCHHHHHhcceEEEEecCCEEEEEcCC
Q 000979 802 VDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPL 841 (1202)
Q Consensus 802 ~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G~~ 841 (1202)
..|+|+|+++|+++ ..+.+|.|+++++ |+++..|+-
T Consensus 1173 -~~gRT~IvIAHRLS--TIqnaD~I~Vi~~-G~VvE~GtH 1208 (1228)
T KOG0055|consen 1173 -MEGRTTIVIAHRLS--TIQNADVIAVLKN-GKVVEQGTH 1208 (1228)
T ss_pred -hcCCcEEEEecchh--hhhcCCEEEEEEC-CEEEecccH
Confidence 56999999999986 5789999999985 899999984
|
|
| >KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-65 Score=623.05 Aligned_cols=467 Identities=27% Similarity=0.482 Sum_probs=391.5
Q ss_pred hhhhhhHHHHHHHHHhCCcccccccccCCcccccCccccchhhHHHHHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHh
Q 000979 39 EGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNI 118 (1202)
Q Consensus 39 ~~~~~~~~v~~il~~lgL~~~~dT~VG~~~~~gLSGGQKqRvsIAraLv~~P~ILlLDEpTSGLDs~sa~~vv~~L~~~a 118 (1202)
.+++++++||+++++|||++|+||+||+...||||||||||||||.+|+.||+|||||||||||||.+|.+|++.|+++|
T Consensus 138 ~~~~k~~~V~~vi~~LgL~~~~~t~ig~~~~rgiSGGErkRvsia~Ell~~P~iLflDEPTSGLDS~sA~~vv~~Lk~lA 217 (613)
T KOG0061|consen 138 SKEEKRERVEEVISELGLEKCADTLIGNPGIRGLSGGERKRVSIALELLTDPSILFLDEPTSGLDSFSALQVVQLLKRLA 217 (613)
T ss_pred CHHHHHHHHHHHHHHcCChhhccceecCCCCCccccchhhHHHHHHHHHcCCCEEEecCCCCCcchhhHHHHHHHHHHHH
Confidence 44899999999999999999999999998889999999999999999999999999999999999999999999999999
Q ss_pred HhCCCEEEEEecCCChHHHhhhcceEEecCCcEEEEcCcchHHHHHHhCCCCCCCCCChhhHHHHhcCchhhhhhhhhcC
Q 000979 119 HINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLEFFASMGFRCPKRKGVADFLQEVTSRKDQRQYWAHKE 198 (1202)
Q Consensus 119 ~~~~tTiIiaihQp~~s~~~~fD~IvvL~~G~vvy~G~~~el~~~F~~lG~~~p~~~n~ad~l~~v~~~~~~~~~~~~~~ 198 (1202)
++ |+|||+|||||+.+++++||++++|++|+++|+|+.+++++||++.|++||++.||+||++++.+..+..+...+.
T Consensus 218 ~~-grtVi~tIHQPss~lf~lFD~l~lLs~G~~vy~G~~~~~~~ff~~~G~~~P~~~Npadf~l~l~s~~~~~~~~~~~- 295 (613)
T KOG0061|consen 218 RS-GRTVICTIHQPSSELFELFDKLLLLSEGEVVYSGSPRELLEFFSSLGFPCPELENPADFLLDLLSVDSGTRELEEA- 295 (613)
T ss_pred hC-CCEEEEEEeCCcHHHHHHHhHhhhhcCCcEEEecCHHHHHHHHHhCCCCCCCcCChHHHHHHHHccCCCchhHHhH-
Confidence 75 9999999999999999999999999999999999999999999999999999999999999987642110000000
Q ss_pred CCCccCCHHHHHHHHHhchhhhhhhhhhcCCCCcccccccccccccccCcHHHHHHHHHHHHHHHHhcChHHHHHHHHHH
Q 000979 199 KPYRFVTVQEFAEAFQSFHVGQKISDELRTPFDKSKSHRAALTTETYGVGKRELLKANISRELLLMKRNSFVYIFKLIQI 278 (1202)
Q Consensus 199 ~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~r~~~~~~~~~~~~ 278 (1202)
.+.....+.++......+.............. .......+++.|+..+.+|.++...|++.....|.++.
T Consensus 296 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~s~~~q~~~L~~R~~~~~~R~~~~~~~r~~~~ 365 (613)
T KOG0061|consen 296 -----VRIAKLINKFSQTDNLKKTLEALEKSLSTSKK-----VEIGTSPSWWTQFKILLKRSLKNIRRDPSLLLLRLIQS 365 (613)
T ss_pred -----HHHHHHhhhccccchhhhhHHHHhhhcccccc-----cccccCCcHHHHHHHHHHHHhHHHhhcHHHHHHHHHHH
Confidence 00001111111000000000000000000000 00001577899999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcccCCCCccccccchhhHHHHHHHHHHHhhHH-HHHHhhhcchhHHHhhcCCCCChhhHHHHHHHHhh
Q 000979 279 AFVAVVYMTLFLRTKMHKDTVTDGGIFAGATFFAITMVNFNGFS-EISMTIAKLPVFYKQRDFRFFPPWAYAIPSWILKI 357 (1202)
Q Consensus 279 ii~~~~~g~~f~~~~~~~~~~~~~~~~~g~~f~~~~~~~~~~~~-~~~~~~~~~~v~~rer~~~~y~~~~y~la~~l~~~ 357 (1202)
+++++++|.+||+.+.+.... .++.|++|+++.+..+.... .+..+..+++++.||+..++|+.++|++|+.+.++
T Consensus 366 ~~~~~~lg~~~~~~~~~~~~~---~~~~g~~~~~~~~~~f~~~~~~i~~f~~e~~~f~rE~~~~~Y~~s~y~la~~l~~l 442 (613)
T KOG0061|consen 366 LVTGLLLGLLYLNLGNDAKGI---QNRLGLFFFILSFMTFLSMFGAVPVFPQERPIFLRETSSGLYRLSSYYLAKTLAEL 442 (613)
T ss_pred HHHHHHHHHHhhCCCCchHHH---HHHHHHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHhcCchhHHHHHHHHHHHHh
Confidence 999999999999986544333 36788888888887666555 57788899999999999999999999999999999
Q ss_pred hHHHHHHHHHHhhhhhcccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHHHhccccCCC
Q 000979 358 PVSFLEVAVWVFLSYYVVGYDSNAGRFFKQYALLLGVNQMASALFRFIAVTGRNMVVANTFGSFALLVLLSLGGFILSRE 437 (1202)
Q Consensus 358 p~~~~~~~i~~~i~y~~~gl~~~~~~f~~~~~~~~~~~~~~~~l~~~i~~~~~~~~ia~~i~~~~~~~~~l~~G~~i~~~ 437 (1202)
|+.++.+.+|..|+|||+|++.+..+|+.+++........+.+++.++++..++...|.++++++.+++++++||+++.+
T Consensus 443 P~~~i~~~if~~i~Y~m~gl~~~~~~f~~~~l~~~~~~~~a~s~~~~i~~~~~~~~~a~~~~~~~~~~f~l~~G~fi~~~ 522 (613)
T KOG0061|consen 443 PFLLVLSIIFSSIVYWMVGLNPGLSRFLYFLLIILLSSLVAESLGLFISAIVPNLSLATSLGPVLLLPFLLFGGFFINFD 522 (613)
T ss_pred HHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhheeehHHHHHHHHHHHhhhhcCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccchhhhhhhhCHHHHHHHHHHHhhcCCCCcccccC--CCCcccHHHHHhhcCcccccchhHHHHHHHHHHHHHHHHHH
Q 000979 438 DIKKWWKWAYWCSPLTYAQNAIVANEFLGHSWKKFTQ--DSSETLGVQVLKSRGFFAHEYWYWLGLGALFGFVLLLNFAY 515 (1202)
Q Consensus 438 ~ip~~~~w~~~isp~~ya~~~~~~~e~~~~~~~~~~~--~~~~~~g~~~l~~~~~~~~~~~~~~~~~il~g~~~~~~~~~ 515 (1202)
.+|.||+|++|+|+.+|++++++.|||.+....|... ..+...+.++++..++... ..|.++.++.++.++++++.
T Consensus 523 ~ip~~~~w~~~~S~~ry~~e~l~~n~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~~l~~l~~~~~~~~il~ 600 (613)
T KOG0061|consen 523 SIPKYFRWISYLSYFRYAFEALLINQFSGGSSRCFLSGNLCCESTGEDVLKQLGFEDS--SFWLDLLVLLAFIVFFRVLG 600 (613)
T ss_pred cccHHHHHHHHHhHHHHHHHHHHHHHhhccccccccCcCCcccccHHHHHHhcCCccc--ccchhHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999998633333332 3566778899998888654 46889999999999999999
Q ss_pred HHHHhcc
Q 000979 516 TLALTFL 522 (1202)
Q Consensus 516 ~l~l~~~ 522 (1202)
++++++.
T Consensus 601 y~~L~~~ 607 (613)
T KOG0061|consen 601 YLALRFR 607 (613)
T ss_pred HHHHHhh
Confidence 9998875
|
|
| >PLN03211 ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-62 Score=600.89 Aligned_cols=462 Identities=20% Similarity=0.322 Sum_probs=371.7
Q ss_pred hhhhHHHHHHHHHhCCcccccccccCCcccccCccccchhhHHHHHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHhHh
Q 000979 41 QEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHI 120 (1202)
Q Consensus 41 ~~~~~~v~~il~~lgL~~~~dT~VG~~~~~gLSGGQKqRvsIAraLv~~P~ILlLDEpTSGLDs~sa~~vv~~L~~~a~~ 120 (1202)
++++++++++++.+||++|+||.||+...++||||||||++||++|+++|+||+|||||||||+.++..+++.|+++++
T Consensus 176 ~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSgGerqRv~ia~aL~~~P~iLlLDEPtsgLD~~~~~~l~~~L~~l~~- 254 (659)
T PLN03211 176 QEKILVAESVISELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDATAAYRLVLTLGSLAQ- 254 (659)
T ss_pred HHHHHHHHHHHHHcCChhhcCceeCCCCCCCcChhhhhHHHHHHHHHhCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHh-
Confidence 4566778999999999999999999988999999999999999999999999999999999999999999999999875
Q ss_pred CCCEEEEEecCCChHHHhhhcceEEecCCcEEEEcCcchHHHHHHhCCCCCCCCCChhhHHHHhcCchhhhhhhhhcCCC
Q 000979 121 NSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLEFFASMGFRCPKRKGVADFLQEVTSRKDQRQYWAHKEKP 200 (1202)
Q Consensus 121 ~~tTiIiaihQp~~s~~~~fD~IvvL~~G~vvy~G~~~el~~~F~~lG~~~p~~~n~ad~l~~v~~~~~~~~~~~~~~~~ 200 (1202)
+++|||+++|||+.++++.||+|++|++|+++|+|+++++++||+++||+||++.|||||++++++.....+.......
T Consensus 255 ~g~TvI~~sH~~~~~i~~~~D~iilL~~G~iv~~G~~~~~~~~f~~~G~~~P~~~NpADf~ldv~~~~~~~~~~~~~~~- 333 (659)
T PLN03211 255 KGKTIVTSMHQPSSRVYQMFDSVLVLSEGRCLFFGKGSDAMAYFESVGFSPSFPMNPADFLLDLANGVCQTDGVSEREK- 333 (659)
T ss_pred CCCEEEEEecCCCHHHHHhhceEEEecCCcEEEECCHHHHHHHHHHCCCCCCCCCCHHHHHHHHcCccccCCCcccccc-
Confidence 6899999999999999999999999999999999999999999999999999999999999999875322100000000
Q ss_pred CccCCHHHHHHHHHhchhhhhhhhhhcCC-CCc--cc-----cccc-ccccccccCcHHHHHHHHHHHHHHHHhcChHHH
Q 000979 201 YRFVTVQEFAEAFQSFHVGQKISDELRTP-FDK--SK-----SHRA-ALTTETYGVGKRELLKANISRELLLMKRNSFVY 271 (1202)
Q Consensus 201 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~~-~~~--~~-----~~~~-~~~~~~~~~~~~~~~~~~~~R~~~~~~r~~~~~ 271 (1202)
....+.+.+.|++... ++..+..... ..+ .. ..+. ......+..+++.|+..+++|.++. +|++...
T Consensus 334 --~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~~~L~~R~~~~-~r~~~~~ 409 (659)
T PLN03211 334 --PNVKQSLVASYNTLLA-PKVKAAIEMSHFPQANARFVGSASTKEHRSSDRISISTWFNQFSILLQRSLKE-RKHESFN 409 (659)
T ss_pred --chHHHHHHHHHHhhcc-HHHHHHHhhhhhhcchhhhhhcccccccccCCCccCCCHHHHHHHHHHHHHHH-HhCcHHH
Confidence 0112333344432111 1100000000 000 00 0000 0011123457889999999999887 7888888
Q ss_pred HHHHHHHHHHHHHHHHHHhcccCCCCccccccchhhHHHHHHHHHHH-hhHHHHHHhhhcchhHHHhhcCCCCChhhHHH
Q 000979 272 IFKLIQIAFVAVVYMTLFLRTKMHKDTVTDGGIFAGATFFAITMVNF-NGFSEISMTIAKLPVFYKQRDFRFFPPWAYAI 350 (1202)
Q Consensus 272 ~~~~~~~ii~~~~~g~~f~~~~~~~~~~~~~~~~~g~~f~~~~~~~~-~~~~~~~~~~~~~~v~~rer~~~~y~~~~y~l 350 (1202)
..|+++.+++|+++|++||+.+ . .+.+++.|++|+++.+..+ ..+..+..+..+|++++|||..++|++++|++
T Consensus 410 ~~r~~~~i~~~ll~G~lf~~~~--~---~~~~~r~g~lff~~~~~~~~~~~~~~~~f~~er~v~~rE~~~~~Y~~~~Y~l 484 (659)
T PLN03211 410 TLRVFQVIAAALLAGLMWWHSD--F---RDVQDRLGLLFFISIFWGVFPSFNSVFVFPQERAIFVKERASGMYTLSSYFM 484 (659)
T ss_pred HHHHHHHHHHHHHHHHHHhcCC--H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhCCCCCHHHHHH
Confidence 8999999999999999999864 1 2345678999988777555 44566777789999999999999999999999
Q ss_pred HHHHHhhhHHHHHHHHHHhhhhhcccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHHHh
Q 000979 351 PSWILKIPVSFLEVAVWVFLSYYVVGYDSNAGRFFKQYALLLGVNQMASALFRFIAVTGRNMVVANTFGSFALLVLLSLG 430 (1202)
Q Consensus 351 a~~l~~~p~~~~~~~i~~~i~y~~~gl~~~~~~f~~~~~~~~~~~~~~~~l~~~i~~~~~~~~ia~~i~~~~~~~~~l~~ 430 (1202)
|+.+.++|+.++.+++|++|+|||+|++.++++|+.+++.+++...++.+++.+++++++++.+|+.+++++++++++|+
T Consensus 485 a~~l~elP~~~~~~~if~~i~Y~m~Gl~~~~~~F~~f~li~~l~~~~~~s~g~~i~a~~~~~~~a~~~~~~~~~~~~lfs 564 (659)
T PLN03211 485 ARIVGDLPMELILPTIFLTVTYWMAGLKPELGAFLLTLLVLLGYVLVSQGLGLALGAAIMDAKKASTIVTVTMLAFVLTG 564 (659)
T ss_pred HHHHHHHHHHHHHHHHHHhheeEcCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCccchhhhhhhhCHHHHHHHHHHHhhcCCCCc-----ccccC-----CCCcccHHHHHhhcCcccccchhHHH
Q 000979 431 GFILSREDIKKWWKWAYWCSPLTYAQNAIVANEFLGHSW-----KKFTQ-----DSSETLGVQVLKSRGFFAHEYWYWLG 500 (1202)
Q Consensus 431 G~~i~~~~ip~~~~w~~~isp~~ya~~~~~~~e~~~~~~-----~~~~~-----~~~~~~g~~~l~~~~~~~~~~~~~~~ 500 (1202)
||+++ .+|.||+|++|+||++|++++++.|||.+... .|... ..+...+...+. ....|.+
T Consensus 565 Gf~i~--~ip~~~~W~~ylS~~~y~~eal~~nef~~~~~~~~~~~C~~~~~~~~~~c~~~~~~~~~-------~~~~~~~ 635 (659)
T PLN03211 565 GFYVH--KLPSCMAWIKYISTTFYSYRLLINVQYGEGKRISSLLGCSLPHGSDRASCKFVEEDVAG-------QISPATS 635 (659)
T ss_pred hhhHh--hchHHHHHHHHhCHHHHHHHHHHHHhcCCccccccccCCCCcccCCCCCCccchhhhhc-------ccchHHH
Confidence 99997 79999999999999999999999999976432 22111 011112222222 2246888
Q ss_pred HHHHHHHHHHHHHHHHHHHhcc
Q 000979 501 LGALFGFVLLLNFAYTLALTFL 522 (1202)
Q Consensus 501 ~~il~g~~~~~~~~~~l~l~~~ 522 (1202)
+++++++.++++++.++++++.
T Consensus 636 ~~~l~~~~~~~~~l~~~~L~~~ 657 (659)
T PLN03211 636 VSVLIFMFVGYRLLAYLALRRI 657 (659)
T ss_pred HHHHHHHHHHHHHHHHHHHHhc
Confidence 8999999999999999888764
|
|
| >TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-62 Score=601.68 Aligned_cols=470 Identities=23% Similarity=0.396 Sum_probs=392.3
Q ss_pred hhhhhHHHHHHHHHhCCcccccccccCCc-ccccCccccchhhHHHHHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHh
Q 000979 40 GQEANVITDYYLKVLGLDVCADTMVGDEM-IRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNI 118 (1202)
Q Consensus 40 ~~~~~~~v~~il~~lgL~~~~dT~VG~~~-~~gLSGGQKqRvsIAraLv~~P~ILlLDEpTSGLDs~sa~~vv~~L~~~a 118 (1202)
.++++++++++++.|||++|+||.||+++ .++|||||||||+|||||+++|+||||||||||||+.++..+++.|++++
T Consensus 134 ~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~~LSgGqrkRvsia~aL~~~p~vlllDEPtsgLD~~~~~~l~~~L~~l~ 213 (617)
T TIGR00955 134 KKEKRERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDEPTSGLDSFMAYSVVQVLKGLA 213 (617)
T ss_pred HHHHHHHHHHHHHHcCchhcCcCccCCCCCCCCcCcchhhHHHHHHHHHcCCCEEEeeCCCcchhHHHHHHHHHHHHHHH
Confidence 35667789999999999999999999753 68999999999999999999999999999999999999999999999987
Q ss_pred HhCCCEEEEEecCCChHHHhhhcceEEecCCcEEEEcCcchHHHHHHhCCCCCCCCCChhhHHHHhcCchhhhhhhhhcC
Q 000979 119 HINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLEFFASMGFRCPKRKGVADFLQEVTSRKDQRQYWAHKE 198 (1202)
Q Consensus 119 ~~~~tTiIiaihQp~~s~~~~fD~IvvL~~G~vvy~G~~~el~~~F~~lG~~~p~~~n~ad~l~~v~~~~~~~~~~~~~~ 198 (1202)
+ +++|||+++|||+.+++++||+|++|++|+++|+|+++++++||+++|++||++.||+||++++++.......
T Consensus 214 ~-~g~tvi~~~hq~~~~i~~~~D~i~ll~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~~~~----- 287 (617)
T TIGR00955 214 Q-KGKTIICTIHQPSSELFELFDKIILMAEGRVAYLGSPDQAVPFFSDLGHPCPENYNPADFYVQVLAVIPGSEN----- 287 (617)
T ss_pred h-CCCEEEEEeCCCCHHHHHHhceEEEeeCCeEEEECCHHHHHHHHHHcCCCCCCCCChHHHHHHHhhcCccccc-----
Confidence 5 6899999999999999999999999999999999999999999999999999999999999998764322110
Q ss_pred CCCccCCHHHHHHHHHhchhhhhhhhhhcCCCCccc---ccccccccccccCcHHHHHHHHHHHHHHHHhcChHHHHHHH
Q 000979 199 KPYRFVTVQEFAEAFQSFHVGQKISDELRTPFDKSK---SHRAALTTETYGVGKRELLKANISRELLLMKRNSFVYIFKL 275 (1202)
Q Consensus 199 ~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~r~~~~~~~~~ 275 (1202)
....+.+++.+.++.++..++..........+.. ..........+..+++.|...+++|.++...||+..+..++
T Consensus 288 --~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~l~~R~~~~~~R~~~~~~~~~ 365 (617)
T TIGR00955 288 --ESRERIEKICDSFAVSDIGRDMLVNTNLWSGKAGGLVKDSENMEGIGYNASWWTQFYALLKRSWLSVLRDPLLLKVRL 365 (617)
T ss_pred --chHHHHHHHHHHHhcchhhHHHHHHhhhhhccccccccccccccccccCCCHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 0011223444555544433332222111100000 00000112235677899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcccCCCCccccccchhhHHHHHHHHHHHhhH-HHHHHhhhcchhHHHhhcCCCCChhhHHHHHHH
Q 000979 276 IQIAFVAVVYMTLFLRTKMHKDTVTDGGIFAGATFFAITMVNFNGF-SEISMTIAKLPVFYKQRDFRFFPPWAYAIPSWI 354 (1202)
Q Consensus 276 ~~~ii~~~~~g~~f~~~~~~~~~~~~~~~~~g~~f~~~~~~~~~~~-~~~~~~~~~~~v~~rer~~~~y~~~~y~la~~l 354 (1202)
++.+++|+++|.+|++.+.+.. +..++.|++|+++....+... ..+..+..+|++++||+..++|++++|++++.+
T Consensus 366 ~~~i~~~li~G~~f~~~~~~~~---~~~~~~g~lf~~~~~~~f~~~~~~~~~f~~er~v~~rE~~~~~Y~~~~y~la~~l 442 (617)
T TIGR00955 366 IQTMMTAILIGLIYLGQGLTQK---GVQNINGALFLFLTNMTFQNVFPVINVFTAELPVFLRETRSGLYRVSAYFLAKTI 442 (617)
T ss_pred HHHHHHHHHHHHhhcCCCCCHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccCHHHHHHHHHH
Confidence 9999999999999998765433 334567888888877766654 345566789999999999999999999999999
Q ss_pred HhhhHHHHHHHHHHhhhhhcccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHHHhcccc
Q 000979 355 LKIPVSFLEVAVWVFLSYYVVGYDSNAGRFFKQYALLLGVNQMASALFRFIAVTGRNMVVANTFGSFALLVLLSLGGFIL 434 (1202)
Q Consensus 355 ~~~p~~~~~~~i~~~i~y~~~gl~~~~~~f~~~~~~~~~~~~~~~~l~~~i~~~~~~~~ia~~i~~~~~~~~~l~~G~~i 434 (1202)
.++|+.++.+++|.+|+|||+|++.++.+|+.+++...+...++.+++.++++++++..+|..+++++.+++++|+||++
T Consensus 443 ~~lp~~~~~~~if~~i~Y~~~gl~~~~~~f~~f~l~~~l~~~~~~s~~~~i~~~~~~~~~a~~~~~~~~~~~~lf~G~~i 522 (617)
T TIGR00955 443 AELPLFIILPALFTSITYWMIGLRSGATHFLTFLFLVTLVANVATSFGYLISCAFSSTSMALTVGPPFVIPFLLFGGFFI 522 (617)
T ss_pred HHHHHHHHHHHHHHhhhheeccCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCccchhhhhhhhCHHHHHHHHHHHhhcCCCCc-ccccC---CCCcccHHHHHhhcCcccccchhHHHHHHHHHHHHH
Q 000979 435 SREDIKKWWKWAYWCSPLTYAQNAIVANEFLGHSW-KKFTQ---DSSETLGVQVLKSRGFFAHEYWYWLGLGALFGFVLL 510 (1202)
Q Consensus 435 ~~~~ip~~~~w~~~isp~~ya~~~~~~~e~~~~~~-~~~~~---~~~~~~g~~~l~~~~~~~~~~~~~~~~~il~g~~~~ 510 (1202)
+.+++|.||+|++|+||++|++++++.|||.+..+ .|... ..+...|.++++.+++... +.|.++++++++.++
T Consensus 523 ~~~~ip~~~~W~~~isp~~ya~~al~~nef~~~~~~~c~~~~~~~~c~~~g~~~l~~~g~~~~--~~~~~~~il~~~~~~ 600 (617)
T TIGR00955 523 NSDSIPVYFKWLSYLSWFRYGNEGLLINQWSDVDNIECTSANTTGPCPSSGEVILETLSFRNA--DLYLDLIGLVILIFF 600 (617)
T ss_pred ChhhccHHHHHHHHcCHHHHHHHHHHHHHhCCCccccccCcCcCCCCCcChHHHHHhcCCCcc--cHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999988654 22211 1233468999999988654 458899999999999
Q ss_pred HHHHHHHHHhcc
Q 000979 511 LNFAYTLALTFL 522 (1202)
Q Consensus 511 ~~~~~~l~l~~~ 522 (1202)
+.+++++++++.
T Consensus 601 ~~~l~~~~L~~~ 612 (617)
T TIGR00955 601 FRLLAYFALRIR 612 (617)
T ss_pred HHHHHHHHHHHH
Confidence 999999988863
|
|
| >PTZ00265 multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-60 Score=625.39 Aligned_cols=218 Identities=20% Similarity=0.320 Sum_probs=180.3
Q ss_pred CceeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCc-----------
Q 000979 601 PHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG----------- 669 (1202)
Q Consensus 601 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~----------- 669 (1202)
...++|+||+|+|+.+ +++++|+|+||+|+|||.+||+||||||||||+++|.|..++.
T Consensus 1163 ~g~I~f~nVsF~Y~~~----------~~~~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~ 1232 (1466)
T PTZ00265 1163 KGKIEIMDVNFRYISR----------PNVPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEH 1232 (1466)
T ss_pred CceEEEEEEEEECCCC----------CCCccccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHHhCCCcccccccccccc
Confidence 3579999999999742 1235899999999999999999999999999999999976541
Q ss_pred -----------------------------------------eEEEEEEEcCccCCc---ccccceEEEeecCCCCCCCCC
Q 000979 670 -----------------------------------------YITGNITISGYPKKQ---ETFARISGYCEQNDIHSPFVT 705 (1202)
Q Consensus 670 -----------------------------------------~~~G~i~~~g~~~~~---~~~~~~~~~v~q~~~~~~~lT 705 (1202)
+.+|+|.+||.++.+ ..+|+.++||+|++.+|+ .|
T Consensus 1233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~LF~-gT 1311 (1466)
T PTZ00265 1233 TNDMTNEQDYQGDEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLFSIVSQEPMLFN-MS 1311 (1466)
T ss_pred ccccccccccccccccccccccccccccccccccccccccCCCCCeEEECCEEHHhCCHHHHHhhccEeCCCCcccc-cc
Confidence 148999999998754 467889999999999985 89
Q ss_pred HHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcC-------CCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEE
Q 000979 706 IYESLLFSAWLRLSPEVDSETRKMFIDEVMELVE-------LNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIF 778 (1202)
Q Consensus 706 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~-------l~~~~~~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~ill 778 (1202)
++|||.++. ++.+.++ ++++++..+ |.+-.|+.+|..| ..||||||||++|||||+++|+||+
T Consensus 1312 IreNI~~g~-----~~at~ee----I~~A~k~A~l~~fI~~LP~GydT~VGe~G-~~LSGGQkQRIaIARALlr~p~ILL 1381 (1466)
T PTZ00265 1312 IYENIKFGK-----EDATRED----VKRACKFAAIDEFIESLPNKYDTNVGPYG-KSLSGGQKQRIAIARALLREPKILL 1381 (1466)
T ss_pred HHHHHhcCC-----CCCCHHH----HHHHHHHcCCHHHHHhCccccCCccCCCC-CcCCHHHHHHHHHHHHHhcCCCEEE
Confidence 999999862 2333333 445555444 4456788888655 4699999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHH-hCCCEEEEEecCCCHHHHHhcceEEEEecC---CEE-EEEcCC
Q 000979 779 MDEPTSGLDARAAAIVMRTVRNTV-DTGRTVVCTIHQPSIDIFEAFDELFLMKRG---GQE-IYVGPL 841 (1202)
Q Consensus 779 lDEPtsgLD~~~~~~v~~~l~~~~-~~g~tvi~~~H~~~~~~~~~~d~v~~l~~g---G~~-~~~G~~ 841 (1202)
||||||+||+++++.|++.|+++. .+++|+|+++|+++ ..+.+|+|++|+++ |++ +..|+.
T Consensus 1382 LDEaTSaLD~~sE~~I~~~L~~~~~~~~~TvIiIaHRls--ti~~aD~Ivvl~~~~~~G~iv~e~Gth 1447 (1466)
T PTZ00265 1382 LDEATSSLDSNSEKLIEKTIVDIKDKADKTIITIAHRIA--SIKRSDKIVVFNNPDRTGSFVQAHGTH 1447 (1466)
T ss_pred EeCcccccCHHHHHHHHHHHHHHhccCCCEEEEEechHH--HHHhCCEEEEEeCCCCCCCEEEEecCH
Confidence 999999999999999999999986 36899999999985 56889999999862 675 478985
|
|
| >TIGR01257 rim_protein retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-57 Score=590.63 Aligned_cols=223 Identities=28% Similarity=0.415 Sum_probs=192.8
Q ss_pred eeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccC
Q 000979 603 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 682 (1202)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 682 (1202)
.++++|+++.|.. +++.+|+||||.|++||++||+||||||||||+|+|+|... +.+|+|.++|.++
T Consensus 1937 ~L~v~nLsK~Y~~-----------~~~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~--ptsG~I~i~G~~i 2003 (2272)
T TIGR01257 1937 ILRLNELTKVYSG-----------TSSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTT--VTSGDATVAGKSI 2003 (2272)
T ss_pred eEEEEEEEEEECC-----------CCceEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCC--CCccEEEECCEEC
Confidence 4889999998841 13569999999999999999999999999999999999876 4589999999886
Q ss_pred Cc--ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHH
Q 000979 683 KQ--ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQ 760 (1202)
Q Consensus 683 ~~--~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGq 760 (1202)
.. ...++.+||++|++.+++.+||+|++.+.+.++. .+.++.++.++++++.++|.+..|+.+ +.|||||
T Consensus 2004 ~~~~~~~r~~IGy~pQ~~~L~~~LTv~E~L~l~a~l~g---~~~~~~~~~v~~lLe~lgL~~~~dk~~-----~~LSGGq 2075 (2272)
T TIGR01257 2004 LTNISDVHQNMGYCPQFDAIDDLLTGREHLYLYARLRG---VPAEEIEKVANWSIQSLGLSLYADRLA-----GTYSGGN 2075 (2272)
T ss_pred cchHHHHhhhEEEEeccccCCCCCCHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCCHHHhcCCh-----hhCCHHH
Confidence 42 2345679999999999999999999998776653 233344566889999999998888774 4799999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCCEEEEEcC
Q 000979 761 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGP 840 (1202)
Q Consensus 761 rqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G~ 840 (1202)
||||+||+||+.+|+||+|||||+|||+.+++.+++.|++++++|+|||++||+++ ++..+|||+++|.+ |+++..|+
T Consensus 2076 KqRLslA~ALi~~P~VLLLDEPTsGLDp~sr~~l~~lL~~l~~~g~TIILtTH~me-e~e~lcDrV~IL~~-G~i~~~Gs 2153 (2272)
T TIGR01257 2076 KRKLSTAIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLTSHSME-ECEALCTRLAIMVK-GAFQCLGT 2153 (2272)
T ss_pred HHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEECC
Confidence 99999999999999999999999999999999999999999878999999999986 68889999999985 89999999
Q ss_pred CCccchhHHHHH
Q 000979 841 LGRHSCHLISYF 852 (1202)
Q Consensus 841 ~~~~~~~~~~~f 852 (1202)
+ +++...|
T Consensus 2154 ~----q~Lk~~~ 2161 (2272)
T TIGR01257 2154 I----QHLKSKF 2161 (2272)
T ss_pred H----HHHHHHh
Confidence 7 4455544
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. |
| >PLN03130 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-55 Score=586.36 Aligned_cols=214 Identities=22% Similarity=0.314 Sum_probs=179.0
Q ss_pred CceeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCc
Q 000979 601 PHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGY 680 (1202)
Q Consensus 601 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~ 680 (1202)
.+.++|+||+|+|+. +...+|+|+||+|+|||.+||+|+||||||||+++|.|..+ +.+|+|.+||.
T Consensus 1235 ~g~I~f~nVsf~Y~~-----------~~~~VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~--p~~G~I~IDG~ 1301 (1622)
T PLN03130 1235 SGSIKFEDVVLRYRP-----------ELPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVE--LERGRILIDGC 1301 (1622)
T ss_pred CCcEEEEEEEEEeCC-----------CCCceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCcCC--CCCceEEECCE
Confidence 357999999999941 12358999999999999999999999999999999999876 45899999999
Q ss_pred cCCc---ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCC-------ccccccccC
Q 000979 681 PKKQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELN-------PLRQSLVGL 750 (1202)
Q Consensus 681 ~~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-------~~~~~~~~~ 750 (1202)
++.. ..+|+.+++|||++.+|+ .|+||||.++. ..++++ +.++++..++. +..|+.+|.
T Consensus 1302 dI~~i~l~~LR~~IsiVpQdp~LF~-GTIreNLd~~~------~~tdee----i~~Al~~a~l~~~I~~lp~GLdt~Vge 1370 (1622)
T PLN03130 1302 DISKFGLMDLRKVLGIIPQAPVLFS-GTVRFNLDPFN------EHNDAD----LWESLERAHLKDVIRRNSLGLDAEVSE 1370 (1622)
T ss_pred ecccCCHHHHHhccEEECCCCcccc-ccHHHHhCcCC------CCCHHH----HHHHHHHcCcHHHHHhCccccCccccC
Confidence 8764 457889999999999987 59999997631 223322 45555555543 345777776
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEe
Q 000979 751 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 830 (1202)
Q Consensus 751 ~~~~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~ 830 (1202)
.| ..||||||||++|||||+++|+||+||||||+||+++++.|++.|++.. +++|+|+++|+++ ....||||++|+
T Consensus 1371 ~G-~nLSgGQrQrlaLARALLr~p~ILILDEATSaLD~~Te~~Iq~~I~~~~-~~~TvI~IAHRL~--tI~~~DrIlVLd 1446 (1622)
T PLN03130 1371 AG-ENFSVGQRQLLSLARALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLN--TIIDCDRILVLD 1446 (1622)
T ss_pred CC-CCCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHC-CCCEEEEEeCChH--HHHhCCEEEEEE
Confidence 54 4699999999999999999999999999999999999999999999874 5899999999986 456699999998
Q ss_pred cCCEEEEEcCCCc
Q 000979 831 RGGQEIYVGPLGR 843 (1202)
Q Consensus 831 ~gG~~~~~G~~~~ 843 (1202)
+ |+++.+|++++
T Consensus 1447 ~-G~IvE~Gt~~e 1458 (1622)
T PLN03130 1447 A-GRVVEFDTPEN 1458 (1622)
T ss_pred C-CEEEEeCCHHH
Confidence 5 89999999854
|
|
| >PLN03232 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-55 Score=586.88 Aligned_cols=213 Identities=21% Similarity=0.282 Sum_probs=178.2
Q ss_pred CceeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCc
Q 000979 601 PHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGY 680 (1202)
Q Consensus 601 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~ 680 (1202)
.+.++|+||+|+|+. +..++|+|+|++|+|||.+||+||||||||||+++|.|..+ +.+|+|.+||.
T Consensus 1232 ~g~I~f~nVsf~Y~~-----------~~~~vL~~isl~I~~GekvaIVG~SGSGKSTL~~lL~rl~~--p~~G~I~IdG~ 1298 (1495)
T PLN03232 1232 RGSIKFEDVHLRYRP-----------GLPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVE--LEKGRIMIDDC 1298 (1495)
T ss_pred CCcEEEEEEEEEECC-----------CCCcccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCc--CCCceEEECCE
Confidence 356999999999941 22458999999999999999999999999999999999876 45899999999
Q ss_pred cCCc---ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCC-------ccccccccC
Q 000979 681 PKKQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELN-------PLRQSLVGL 750 (1202)
Q Consensus 681 ~~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-------~~~~~~~~~ 750 (1202)
++.+ ..+|+.+++|||++.+++ .|+||||.+.. +.++++ +.++++..++. +-.|+.+|.
T Consensus 1299 di~~i~~~~lR~~i~iVpQdp~LF~-gTIr~NL~~~~------~~sdee----i~~al~~a~l~~~I~~lp~GLdt~v~e 1367 (1495)
T PLN03232 1299 DVAKFGLTDLRRVLSIIPQSPVLFS-GTVRFNIDPFS------EHNDAD----LWEALERAHIKDVIDRNPFGLDAEVSE 1367 (1495)
T ss_pred EhhhCCHHHHHhhcEEECCCCeeeC-ccHHHHcCCCC------CCCHHH----HHHHHHHcCCHHHHHhCcCCCCceecC
Confidence 8754 457889999999999987 59999997531 223332 45666666553 345667766
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEe
Q 000979 751 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 830 (1202)
Q Consensus 751 ~~~~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~ 830 (1202)
.| ..||||||||++|||||+++|+||+||||||+||+++++.|++.|++.. +++|+|+++|+++ ....+|||++|+
T Consensus 1368 ~G-~~LSgGQrQrlaLARALLr~~~ILILDEATSaLD~~Te~~Iq~~L~~~~-~~~TvI~IAHRl~--ti~~~DrIlVL~ 1443 (1495)
T PLN03232 1368 GG-ENFSVGQRQLLSLARALLRRSKILVLDEATASVDVRTDSLIQRTIREEF-KSCTMLVIAHRLN--TIIDCDKILVLS 1443 (1495)
T ss_pred CC-CCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHc-CCCEEEEEeCCHH--HHHhCCEEEEEE
Confidence 44 4699999999999999999999999999999999999999999999864 5899999999985 456799999998
Q ss_pred cCCEEEEEcCCC
Q 000979 831 RGGQEIYVGPLG 842 (1202)
Q Consensus 831 ~gG~~~~~G~~~ 842 (1202)
+ |+++..|+++
T Consensus 1444 ~-G~ivE~Gt~~ 1454 (1495)
T PLN03232 1444 S-GQVLEYDSPQ 1454 (1495)
T ss_pred C-CEEEEECCHH
Confidence 5 8999999974
|
|
| >COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-53 Score=487.95 Aligned_cols=225 Identities=25% Similarity=0.318 Sum_probs=186.3
Q ss_pred eEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccC-
Q 000979 604 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK- 682 (1202)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~- 682 (1202)
++.+|++..|..++... ....+...+++||||++++||++||+|+||||||||.|+|+|...+ ..|.|.++|.+.
T Consensus 281 l~V~~l~k~y~~~~~~~--~~~~~~~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~P--~~G~i~~~g~~~~ 356 (539)
T COG1123 281 LSVRNLSKRYGSRKGLF--VRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPP--SSGSIIFDGQDLD 356 (539)
T ss_pred eEeeeeeeeeccccccc--cccccceeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEEeCcccc
Confidence 67789988887543111 0112456799999999999999999999999999999999998874 589999999762
Q ss_pred -Cc---ccccceEEEeecCC--CCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCCCCCC
Q 000979 683 -KQ---ETFARISGYCEQND--IHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP-LRQSLVGLPGVSG 755 (1202)
Q Consensus 683 -~~---~~~~~~~~~v~q~~--~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~-~~~~~~~~~~~~~ 755 (1202)
+. ...++.+-+|+|++ .+.|.+||++++.-........ ...++++++.++++.++|.. ..++. +++
T Consensus 357 ~~~~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL~~~~~~--~~~~~~~rv~~ll~~VgL~~~~l~ry-----P~e 429 (539)
T COG1123 357 LTGGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGGG--SGAERRARVAELLELVGLPPEFLDRY-----PHE 429 (539)
T ss_pred cccchhhhhhhheEEEEeCcccccCccccHHHHHHhHHhhhccc--chHHHHHHHHHHHHHcCCCHHHHhcC-----chh
Confidence 11 23456677888886 6789999999998776544322 24566778999999999985 34443 468
Q ss_pred CCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhcceEEEEecCCE
Q 000979 756 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQ 834 (1202)
Q Consensus 756 LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~ 834 (1202)
||||||||++|||||+.+|++|++|||||.||+..+..+.++|+++.++ |.|.|+++||+. -+..+|||+++|.+ |+
T Consensus 430 lSGGQrQRvaIARALa~~P~lli~DEp~SaLDvsvqa~VlnLl~~lq~e~g~t~lfISHDl~-vV~~i~drv~vm~~-G~ 507 (539)
T COG1123 430 LSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEELGLTYLFISHDLA-VVRYIADRVAVMYD-GR 507 (539)
T ss_pred cCcchhHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHH-HHHhhCceEEEEEC-Ce
Confidence 9999999999999999999999999999999999999999999999866 999999999987 47889999999985 89
Q ss_pred EEEEcCC
Q 000979 835 EIYVGPL 841 (1202)
Q Consensus 835 ~~~~G~~ 841 (1202)
+|..||.
T Consensus 508 iVE~G~~ 514 (539)
T COG1123 508 IVEEGPT 514 (539)
T ss_pred EEEeCCH
Confidence 9999975
|
|
| >TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-52 Score=558.24 Aligned_cols=213 Identities=18% Similarity=0.232 Sum_probs=178.6
Q ss_pred CceeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCc
Q 000979 601 PHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGY 680 (1202)
Q Consensus 601 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~ 680 (1202)
.+.++|+||+++|+.. ...+|+||||+|+|||.+||+|+||||||||+++|.|..+ +.+|+|.+||.
T Consensus 1282 ~g~I~f~nVsf~Y~~~-----------~~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~--~~~G~I~IdG~ 1348 (1522)
T TIGR00957 1282 RGRVEFRNYCLRYRED-----------LDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINE--SAEGEIIIDGL 1348 (1522)
T ss_pred CCcEEEEEEEEEeCCC-----------CcccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcc--CCCCeEEECCE
Confidence 3579999999999521 1358999999999999999999999999999999999876 45899999999
Q ss_pred cCCc---ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCC-------ccccccccC
Q 000979 681 PKKQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELN-------PLRQSLVGL 750 (1202)
Q Consensus 681 ~~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-------~~~~~~~~~ 750 (1202)
++.. ..+|+.+++|||++.+|+ .|+||||.... +.++++ +.++++..++. +-.|+.+|.
T Consensus 1349 dI~~i~~~~LR~~i~iVpQdp~LF~-gTIr~NLdp~~------~~sdee----i~~al~~a~l~~~I~~lp~GLdt~v~e 1417 (1522)
T TIGR00957 1349 NIAKIGLHDLRFKITIIPQDPVLFS-GSLRMNLDPFS------QYSDEE----VWWALELAHLKTFVSALPDKLDHECAE 1417 (1522)
T ss_pred EccccCHHHHHhcCeEECCCCcccC-ccHHHHcCccc------CCCHHH----HHHHHHHcCcHHHHhhCccCCCceecC
Confidence 8764 457889999999999997 59999996311 233332 45666666654 345777776
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEe
Q 000979 751 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 830 (1202)
Q Consensus 751 ~~~~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~ 830 (1202)
.| ..||||||||++|||||+++|+||+||||||+||+++...+++.|++.. +++|||+++|+++ ....+|||++|+
T Consensus 1418 ~G-~~LSgGQrQrl~LARALLr~~~ILiLDEaTSalD~~Te~~Iq~~l~~~~-~~~TvI~IAHRl~--ti~~~DrIlVld 1493 (1522)
T TIGR00957 1418 GG-ENLSVGQRQLVCLARALLRKTKILVLDEATAAVDLETDNLIQSTIRTQF-EDCTVLTIAHRLN--TIMDYTRVIVLD 1493 (1522)
T ss_pred CC-CcCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHH--HHHhCCEEEEEE
Confidence 44 4699999999999999999999999999999999999999999998864 5899999999985 466799999998
Q ss_pred cCCEEEEEcCCC
Q 000979 831 RGGQEIYVGPLG 842 (1202)
Q Consensus 831 ~gG~~~~~G~~~ 842 (1202)
+ |+++.+|+++
T Consensus 1494 ~-G~IvE~G~~~ 1504 (1522)
T TIGR00957 1494 K-GEVAEFGAPS 1504 (1522)
T ss_pred C-CEEEEECCHH
Confidence 5 8999999974
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. |
| >PTZ00243 ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-51 Score=550.42 Aligned_cols=212 Identities=24% Similarity=0.275 Sum_probs=178.8
Q ss_pred ceeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCcc
Q 000979 602 HSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP 681 (1202)
Q Consensus 602 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 681 (1202)
+.++|+||+|+|+. +...+|+||||+|+|||.+||+|+||||||||+++|.|..+ +.+|+|.+||.+
T Consensus 1307 G~I~f~nVsf~Y~~-----------~~~~vL~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~--p~~G~I~IDG~d 1373 (1560)
T PTZ00243 1307 GSLVFEGVQMRYRE-----------GLPLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVE--VCGGEIRVNGRE 1373 (1560)
T ss_pred CeEEEEEEEEEeCC-----------CCCceeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEE
Confidence 57999999999952 22358999999999999999999999999999999999876 458999999998
Q ss_pred CCc---ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCc-------cccccccCC
Q 000979 682 KKQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP-------LRQSLVGLP 751 (1202)
Q Consensus 682 ~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~-------~~~~~~~~~ 751 (1202)
+.. ..+|+.++||||++.+|+ .||+|||... .+.+++ .+.++++..++.+ -.|+.+|..
T Consensus 1374 i~~i~l~~LR~~I~iVpQdp~LF~-gTIreNIdp~------~~~sde----eI~~Al~~a~l~~~I~~lp~Gldt~vge~ 1442 (1560)
T PTZ00243 1374 IGAYGLRELRRQFSMIPQDPVLFD-GTVRQNVDPF------LEASSA----EVWAALELVGLRERVASESEGIDSRVLEG 1442 (1560)
T ss_pred cccCCHHHHHhcceEECCCCcccc-ccHHHHhCcc------cCCCHH----HHHHHHHHCCChHHHhhCcccccccccCC
Confidence 754 467889999999999987 5999999632 123332 3567777776653 356777764
Q ss_pred CCCCCCHHHHHHHHHHHHHhhC-CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEe
Q 000979 752 GVSGLSTEQRKRLTIAVELVAN-PSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 830 (1202)
Q Consensus 752 ~~~~LSgGqrqRv~ia~aL~~~-p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~ 830 (1202)
| ..||||||||++|||||+++ |+||+||||||+||+++.+.+++.|++.. +++|||+++|+++ ....||+|++|+
T Consensus 1443 G-~nLSgGQrQrLaLARALL~~~~~ILlLDEATSaLD~~te~~Iq~~L~~~~-~~~TvI~IAHRl~--ti~~~DrIlVLd 1518 (1560)
T PTZ00243 1443 G-SNYSVGQRQLMCMARALLKKGSGFILMDEATANIDPALDRQIQATVMSAF-SAYTVITIAHRLH--TVAQYDKIIVMD 1518 (1560)
T ss_pred c-CcCCHHHHHHHHHHHHHhcCCCCEEEEeCCCccCCHHHHHHHHHHHHHHC-CCCEEEEEeccHH--HHHhCCEEEEEE
Confidence 4 46999999999999999996 89999999999999999999999999863 5799999999985 567899999998
Q ss_pred cCCEEEEEcCCC
Q 000979 831 RGGQEIYVGPLG 842 (1202)
Q Consensus 831 ~gG~~~~~G~~~ 842 (1202)
+ |+++..|+++
T Consensus 1519 ~-G~VvE~Gt~~ 1529 (1560)
T PTZ00243 1519 H-GAVAEMGSPR 1529 (1560)
T ss_pred C-CEEEEECCHH
Confidence 5 8999999974
|
|
| >PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-49 Score=483.86 Aligned_cols=225 Identities=22% Similarity=0.295 Sum_probs=178.8
Q ss_pred eEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCC
Q 000979 604 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 683 (1202)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 683 (1202)
++++|+++.|+.... .. +...+++.+|+|+||++++||+++|+||||||||||+|+|+|..+ .+|+|.++|.++.
T Consensus 276 l~~~~l~~~~~~~~~-~~-~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~---~~G~i~~~g~~i~ 350 (529)
T PRK15134 276 LDVEQLQVAFPIRKG-IL-KRTVDHNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLIN---SQGEIWFDGQPLH 350 (529)
T ss_pred ccccCcEEEeecCcc-cc-ccccccceeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcCC---CCcEEEECCEEcc
Confidence 567788877741100 00 000123468999999999999999999999999999999999863 3799999998753
Q ss_pred cc------cccceEEEeecCC--CCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCCCCC
Q 000979 684 QE------TFARISGYCEQND--IHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELN-PLRQSLVGLPGVS 754 (1202)
Q Consensus 684 ~~------~~~~~~~~v~q~~--~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-~~~~~~~~~~~~~ 754 (1202)
.. .+++.++|++|++ .+++.+||+||+.++...+.. .....+.+++++++++.+++. +..++. ++
T Consensus 351 ~~~~~~~~~~~~~i~~v~q~~~~~l~~~~tv~e~l~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~ 424 (529)
T PRK15134 351 NLNRRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQP-TLSAAQREQQVIAVMEEVGLDPETRHRY-----PA 424 (529)
T ss_pred ccchhhHHHhhhceEEEEeCchhhcCCcccHHHHHHHHHHhccc-cCChHHHHHHHHHHHHHcCCCHHHHhcC-----Cc
Confidence 21 1345689999996 478889999999886543211 122333455688999999996 355554 35
Q ss_pred CCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhcceEEEEecCC
Q 000979 755 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGG 833 (1202)
Q Consensus 755 ~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gG 833 (1202)
.|||||||||+|||||+.+|++|+|||||+|||+.++..+++.|++++++ |+|||++||+++ .+.+.||++++|++ |
T Consensus 425 ~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsHd~~-~~~~~~d~i~~l~~-G 502 (529)
T PRK15134 425 EFSGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHQLAYLFISHDLH-VVRALCHQVIVLRQ-G 502 (529)
T ss_pred cCCHHHHHHHHHHHHHhCCCCEEEeeCCccccCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHH-HHHHhcCeEEEEEC-C
Confidence 79999999999999999999999999999999999999999999999865 899999999986 57789999999985 7
Q ss_pred EEEEEcCC
Q 000979 834 QEIYVGPL 841 (1202)
Q Consensus 834 ~~~~~G~~ 841 (1202)
+++..|++
T Consensus 503 ~i~~~~~~ 510 (529)
T PRK15134 503 EVVEQGDC 510 (529)
T ss_pred EEEEEcCH
Confidence 99999986
|
|
| >TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-49 Score=481.83 Aligned_cols=217 Identities=22% Similarity=0.315 Sum_probs=176.7
Q ss_pred eEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEc-Ccc-
Q 000979 604 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITIS-GYP- 681 (1202)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~-g~~- 681 (1202)
++++|+++.|+.. ..+++.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++ |.+
T Consensus 280 l~~~~l~~~~~~~--------~~~~~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~--p~~G~i~~~~g~~~ 349 (520)
T TIGR03269 280 IKVRNVSKRYISV--------DRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLE--PTSGEVNVRVGDEW 349 (520)
T ss_pred EEEeccEEEeccC--------CCCCceEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEEecCCcc
Confidence 6788888887410 0123468999999999999999999999999999999999876 458999996 532
Q ss_pred --CCc------ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCc-----cccccc
Q 000979 682 --KKQ------ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP-----LRQSLV 748 (1202)
Q Consensus 682 --~~~------~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~-----~~~~~~ 748 (1202)
... ...++.++|++|++.+++.+||+||+.+...+. ...++.+++++++++.+++.+ ..++.
T Consensus 350 ~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~----~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~- 424 (520)
T TIGR03269 350 VDMTKPGPDGRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGLE----LPDELARMKAVITLKMVGFDEEKAEEILDKY- 424 (520)
T ss_pred ccccccchhhHHHHhhhEEEEccCcccCCCCcHHHHHHHHHHcC----CCHHHHHHHHHHHHHhCCCCCccchhhhhCC-
Confidence 111 123456899999998899999999998764321 122333456788999999975 33444
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhcceEE
Q 000979 749 GLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELF 827 (1202)
Q Consensus 749 ~~~~~~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~ 827 (1202)
+..|||||||||+|||||+.+|++|||||||+|||+.++..+++.|++++++ |.|||++||+++ .+.+.|||++
T Consensus 425 ----~~~LSgGq~qrv~laral~~~p~lLllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~-~~~~~~d~i~ 499 (520)
T TIGR03269 425 ----PDELSEGERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHDMD-FVLDVCDRAA 499 (520)
T ss_pred ----hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHH-HHHHhCCEEE
Confidence 3579999999999999999999999999999999999999999999999765 899999999986 5788999999
Q ss_pred EEecCCEEEEEcCC
Q 000979 828 LMKRGGQEIYVGPL 841 (1202)
Q Consensus 828 ~l~~gG~~~~~G~~ 841 (1202)
+|++ |+++..|++
T Consensus 500 ~l~~-G~i~~~g~~ 512 (520)
T TIGR03269 500 LMRD-GKIVKIGDP 512 (520)
T ss_pred EEEC-CEEEEECCH
Confidence 9985 899999876
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. |
| >PRK10261 glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-49 Score=486.46 Aligned_cols=227 Identities=21% Similarity=0.222 Sum_probs=183.9
Q ss_pred eeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccC
Q 000979 603 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 682 (1202)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 682 (1202)
-++++|+++.|+.+... . ....+.+.+|+||||+|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++
T Consensus 313 ~L~~~~l~~~y~~~~~~-~-~~~~~~~~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~--p~~G~I~~~g~~i 388 (623)
T PRK10261 313 ILQVRNLVTRFPLRSGL-L-NRVTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVE--SQGGEIIFNGQRI 388 (623)
T ss_pred eEEEeeeEEEEcCCCcc-c-cccCCceEEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCC--CCCcEEEECCEEC
Confidence 37899999988521100 0 000112469999999999999999999999999999999999876 4589999999875
Q ss_pred Ccc------cccceEEEeecCC--CCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCCCC
Q 000979 683 KQE------TFARISGYCEQND--IHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELN-PLRQSLVGLPGV 753 (1202)
Q Consensus 683 ~~~------~~~~~~~~v~q~~--~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-~~~~~~~~~~~~ 753 (1202)
... .+++.++||+|++ .+++.+||.||+.+....+. ....++.+++++++++.+||. +..++. +
T Consensus 389 ~~~~~~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~L~~~gL~~~~~~~~-----~ 461 (623)
T PRK10261 389 DTLSPGKLQALRRDIQFIFQDPYASLDPRQTVGDSIMEPLRVHG--LLPGKAAAARVAWLLERVGLLPEHAWRY-----P 461 (623)
T ss_pred CcCCHHHHHHhcCCeEEEecCchhhcCCCCCHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHHcCCCHHHhhCC-----c
Confidence 321 2356799999997 58889999999987654321 112334456788999999995 455554 3
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhcceEEEEecC
Q 000979 754 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRG 832 (1202)
Q Consensus 754 ~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~g 832 (1202)
++|||||||||+|||||+.+|++|||||||+|||+.++..++++|++++++ |.|||++|||++ .+.+.|||+++|.+
T Consensus 462 ~~LSgGqrQRv~iAraL~~~p~llllDEPts~LD~~~~~~i~~ll~~l~~~~g~tvi~isHdl~-~v~~~~dri~vl~~- 539 (623)
T PRK10261 462 HEFSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFGIAYLFISHDMA-VVERISHRVAVMYL- 539 (623)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-
Confidence 579999999999999999999999999999999999999999999999765 899999999986 57889999999985
Q ss_pred CEEEEEcCCC
Q 000979 833 GQEIYVGPLG 842 (1202)
Q Consensus 833 G~~~~~G~~~ 842 (1202)
|+++..|+++
T Consensus 540 G~iv~~g~~~ 549 (623)
T PRK10261 540 GQIVEIGPRR 549 (623)
T ss_pred CEEEEecCHH
Confidence 8999999874
|
|
| >TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-48 Score=523.14 Aligned_cols=211 Identities=19% Similarity=0.250 Sum_probs=178.0
Q ss_pred ceeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCcc
Q 000979 602 HSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP 681 (1202)
Q Consensus 602 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 681 (1202)
+.++|+||+++|+. +...+|+||||+|+|||.+||+|+||||||||+++|.|... .+|+|.+||.+
T Consensus 1216 g~I~f~nVs~~Y~~-----------~~~~vL~~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl~~---~~G~I~IdG~d 1281 (1490)
T TIGR01271 1216 GQMDVQGLTAKYTE-----------AGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLS---TEGEIQIDGVS 1281 (1490)
T ss_pred CeEEEEEEEEEeCC-----------CCcceeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC---CCcEEEECCEE
Confidence 57999999999952 23468999999999999999999999999999999999864 37999999998
Q ss_pred CCc---ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCc-------cccccccCC
Q 000979 682 KKQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP-------LRQSLVGLP 751 (1202)
Q Consensus 682 ~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~-------~~~~~~~~~ 751 (1202)
+.. ..+|+.++||||++.+|+ .|+||||.... ..+++ .+.++++.+++.+ -.|+.++..
T Consensus 1282 i~~i~~~~lR~~is~IpQdp~LF~-GTIR~NLdp~~------~~tde----ei~~aL~~~~L~~~i~~lp~GLdt~v~e~ 1350 (1490)
T TIGR01271 1282 WNSVTLQTWRKAFGVIPQKVFIFS-GTFRKNLDPYE------QWSDE----EIWKVAEEVGLKSVIEQFPDKLDFVLVDG 1350 (1490)
T ss_pred cccCCHHHHHhceEEEeCCCccCc-cCHHHHhCccc------CCCHH----HHHHHHHHCCCHHHHHhCccccccccccC
Confidence 764 457889999999999997 59999995421 22322 3567777777643 356777654
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEec
Q 000979 752 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKR 831 (1202)
Q Consensus 752 ~~~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~ 831 (1202)
| ..||||||||++|||||+++|+||+||||||+||+.+...+++.|++.. +++|||+++|+++ ....+|||++|++
T Consensus 1351 G-~nLSgGQrQrL~LARALLr~~~ILlLDEaTS~lD~~Te~~I~~~L~~~~-~~~TvI~IaHRl~--ti~~~DrIlvL~~ 1426 (1490)
T TIGR01271 1351 G-YVLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQIIRKTLKQSF-SNCTVILSEHRVE--ALLECQQFLVIEG 1426 (1490)
T ss_pred C-CcCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHH--HHHhCCEEEEEEC
Confidence 3 4699999999999999999999999999999999999999999999864 5799999999985 4667999999985
Q ss_pred CCEEEEEcCCC
Q 000979 832 GGQEIYVGPLG 842 (1202)
Q Consensus 832 gG~~~~~G~~~ 842 (1202)
|+++.+|++.
T Consensus 1427 -G~ivE~g~p~ 1436 (1490)
T TIGR01271 1427 -SSVKQYDSIQ 1436 (1490)
T ss_pred -CEEEEeCCHH
Confidence 8999999974
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. |
| >PRK13549 xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-49 Score=479.77 Aligned_cols=223 Identities=21% Similarity=0.306 Sum_probs=179.3
Q ss_pred eEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCC
Q 000979 604 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 683 (1202)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 683 (1202)
++++|+++.|+. .+++.+|+|+||++++||+++|+||||||||||+|+|+|..++ +.+|+|.++|.++.
T Consensus 260 l~~~~l~~~~~~----------~~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~-~~~G~i~~~g~~~~ 328 (506)
T PRK13549 260 LEVRNLTAWDPV----------NPHIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPG-RWEGEIFIDGKPVK 328 (506)
T ss_pred EEEecCcccccc----------ccccccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCC-CCCcEEEECCEECC
Confidence 567777776531 0123589999999999999999999999999999999998642 24799999998753
Q ss_pred cc----cccceEEEeecCC---CCCCCCCHHHHHHHHHHccCC--CCCCHHHHHHHHHHHHHHcCCC-ccccccccCCCC
Q 000979 684 QE----TFARISGYCEQND---IHSPFVTIYESLLFSAWLRLS--PEVDSETRKMFIDEVMELVELN-PLRQSLVGLPGV 753 (1202)
Q Consensus 684 ~~----~~~~~~~~v~q~~---~~~~~lTv~e~l~~~~~~~~~--~~~~~~~~~~~~~~~l~~l~l~-~~~~~~~~~~~~ 753 (1202)
.. ..++.++|++|++ .+++.+||.||+.+....... ...+.++.++.++++++.+++. +..++.+
T Consensus 329 ~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~----- 403 (506)
T PRK13549 329 IRNPQQAIAQGIAMVPEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAAELKTILESIQRLKVKTASPELAI----- 403 (506)
T ss_pred CCCHHHHHHCCCEEeCcchhhCCCcCCCCHHHHhhhhhhhhhccCcccChHHHHHHHHHHHHhcCccCCCccccc-----
Confidence 21 2245689999985 477889999999875321110 0012233445688999999996 4566653
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCC
Q 000979 754 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGG 833 (1202)
Q Consensus 754 ~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG 833 (1202)
+.|||||||||+|||||+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||+++ ++.+.||++++|.+ |
T Consensus 404 ~~LSgG~kqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~~sHd~~-~~~~~~d~v~~l~~-G 481 (506)
T PRK13549 404 ARLSGGNQQKAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLVQQGVAIIVISSELP-EVLGLSDRVLVMHE-G 481 (506)
T ss_pred ccCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHHCCCEEEEECCCHH-HHHHhCCEEEEEEC-C
Confidence 579999999999999999999999999999999999999999999999888999999999986 57889999999985 8
Q ss_pred EEEEEcCCCcc
Q 000979 834 QEIYVGPLGRH 844 (1202)
Q Consensus 834 ~~~~~G~~~~~ 844 (1202)
+++..|++++.
T Consensus 482 ~i~~~~~~~~~ 492 (506)
T PRK13549 482 KLKGDLINHNL 492 (506)
T ss_pred EEEEEeccccC
Confidence 99999987653
|
|
| >PRK09700 D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-49 Score=480.25 Aligned_cols=202 Identities=20% Similarity=0.317 Sum_probs=168.3
Q ss_pred EeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCCcc----cccceEEEeecC---CCCCCC
Q 000979 631 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQE----TFARISGYCEQN---DIHSPF 703 (1202)
Q Consensus 631 iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~----~~~~~~~~v~q~---~~~~~~ 703 (1202)
+|+|+||++++||+++|+||||||||||+|+|+|..+ +.+|+|.++|.++... ..++.++|++|+ ..+++.
T Consensus 278 ~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~--p~~G~I~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~ 355 (510)
T PRK09700 278 KVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDK--RAGGEIRLNGKDISPRSPLDAVKKGMAYITESRRDNGFFPN 355 (510)
T ss_pred cccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCc--CCCCeEEECCEECCCCCHHHHHHCCcEEccCccccCCCcCC
Confidence 6999999999999999999999999999999999876 4589999999875321 234568999998 467889
Q ss_pred CCHHHHHHHHHHcc---CCC--C-CCHHHHHHHHHHHHHHcCCC-ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCE
Q 000979 704 VTIYESLLFSAWLR---LSP--E-VDSETRKMFIDEVMELVELN-PLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSI 776 (1202)
Q Consensus 704 lTv~e~l~~~~~~~---~~~--~-~~~~~~~~~~~~~l~~l~l~-~~~~~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~i 776 (1202)
+||+||+.+....+ ... . ......++.++++++.+++. +..++.+ +.|||||||||+|||+|+.+|+|
T Consensus 356 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~~LSgGq~qrv~lAral~~~p~l 430 (510)
T PRK09700 356 FSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKCHSVNQNI-----TELSGGNQQKVLISKWLCCCPEV 430 (510)
T ss_pred CcHHHHhccccccccccccccccccChHHHHHHHHHHHHhcCCCCCCccCcc-----ccCChHHHHHHHHHHHHhcCCCE
Confidence 99999998753211 000 0 11222334578899999996 6666654 57999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCCEEEEEcCC
Q 000979 777 IFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPL 841 (1202)
Q Consensus 777 lllDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G~~ 841 (1202)
|||||||+|||+.++..+.+.|++++++|.|||++|||+. .+.+.|||+++|++ |+++..++.
T Consensus 431 LlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~vsHd~~-~~~~~~d~i~~l~~-G~i~~~~~~ 493 (510)
T PRK09700 431 IIFDEPTRGIDVGAKAEIYKVMRQLADDGKVILMVSSELP-EIITVCDRIAVFCE-GRLTQILTN 493 (510)
T ss_pred EEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEcCCHH-HHHhhCCEEEEEEC-CEEEEEecC
Confidence 9999999999999999999999999878999999999986 57889999999985 799998876
|
|
| >PRK10762 D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-48 Score=471.90 Aligned_cols=204 Identities=21% Similarity=0.317 Sum_probs=170.1
Q ss_pred EeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCCcc----cccceEEEeecCC---CCCCC
Q 000979 631 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQE----TFARISGYCEQND---IHSPF 703 (1202)
Q Consensus 631 iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~----~~~~~~~~v~q~~---~~~~~ 703 (1202)
+|+|+||++++||+++|+||||||||||+++|+|... +.+|+|.++|.++... ..++.++|++|++ .+++.
T Consensus 267 ~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~--p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~~~ 344 (501)
T PRK10762 267 GVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALP--RTSGYVTLDGHEVVTRSPQDGLANGIVYISEDRKRDGLVLG 344 (501)
T ss_pred CcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCC--CCceEEEECCEECCCCCHHHHHHCCCEEecCccccCCCcCC
Confidence 4999999999999999999999999999999999876 4589999999875421 2345699999996 57788
Q ss_pred CCHHHHHHHHHHccCC---CCCCHHHHHHHHHHHHHHcCCC-ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEE
Q 000979 704 VTIYESLLFSAWLRLS---PEVDSETRKMFIDEVMELVELN-PLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFM 779 (1202)
Q Consensus 704 lTv~e~l~~~~~~~~~---~~~~~~~~~~~~~~~l~~l~l~-~~~~~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~illl 779 (1202)
+||.||+.+....... .....++.++.++++++.+++. +..++.+ ..|||||||||+|||||+.+|++|+|
T Consensus 345 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~~LSgGekqrv~lA~al~~~p~lllL 419 (501)
T PRK10762 345 MSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKTPSMEQAI-----GLLSGGNQQKVAIARGLMTRPKVLIL 419 (501)
T ss_pred CcHHHHhhhhhhhhhcccccccCHHHHHHHHHHHHHhcCCCCCCccCch-----hhCCHHHHHHHHHHHHHhhCCCEEEE
Confidence 9999999875321100 0112233345688999999995 5566653 57999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCCEEEEEcCCCc
Q 000979 780 DEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLGR 843 (1202)
Q Consensus 780 DEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G~~~~ 843 (1202)
||||+|||+.++..+.+.|++++++|.|||++||+++ ++.+.||++++|++ |+++..|++++
T Consensus 420 DEPt~~LD~~~~~~l~~~l~~~~~~g~tviivtHd~~-~~~~~~d~v~~l~~-G~i~~~~~~~~ 481 (501)
T PRK10762 420 DEPTRGVDVGAKKEIYQLINQFKAEGLSIILVSSEMP-EVLGMSDRILVMHE-GRISGEFTREQ 481 (501)
T ss_pred cCCCCCCCHhHHHHHHHHHHHHHHCCCEEEEEcCCHH-HHHhhCCEEEEEEC-CEEEEEecccc
Confidence 9999999999999999999999878999999999986 67889999999985 89999998865
|
|
| >COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-47 Score=413.70 Aligned_cols=227 Identities=24% Similarity=0.311 Sum_probs=190.5
Q ss_pred eeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccC
Q 000979 603 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 682 (1202)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 682 (1202)
-++.+|+...++.+...-. .......++++||+++++||.++|+|.||||||||=.+|.+...+ +|+|.++|.++
T Consensus 276 ll~~~~v~v~f~i~~g~~~--r~~~~~~AVd~isl~L~~gqTlGlVGESGSGKsTlG~allrL~~s---~G~I~F~G~~i 350 (534)
T COG4172 276 LLEVEDLRVWFPIKGGFLR--RTVDHLRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPS---QGEIRFDGQDI 350 (534)
T ss_pred eEEecceEEEEecCCcccc--ccchheEEeccceeEecCCCeEEEEecCCCCcchHHHHHHhhcCc---CceEEECCccc
Confidence 4667788777776532211 112446799999999999999999999999999999999987653 49999999987
Q ss_pred Cc------ccccceEEEeecCC--CCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCC
Q 000979 683 KQ------ETFARISGYCEQND--IHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVS 754 (1202)
Q Consensus 683 ~~------~~~~~~~~~v~q~~--~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~ 754 (1202)
.. ...|+.+-.|+||| .+.|.+||.|-+.-+.....+ ..+..+|.+++.++++.+||... +.... ++
T Consensus 351 ~~~~~~~mrplR~~mQvVFQDPygSLsPRmtV~qII~EGL~vh~~-~ls~~eR~~rv~~aL~EVGLDp~--~r~RY--Ph 425 (534)
T COG4172 351 DGLSRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEP-KLSAAERDQRVIEALEEVGLDPA--TRNRY--PH 425 (534)
T ss_pred cccChhhhhhhhhhceEEEeCCCCCCCcccCHHHHhhhhhhhcCC-CCCHHHHHHHHHHHHHHcCCChh--HhhcC--Cc
Confidence 53 34577889999998 578999999998887766543 46778899999999999999763 22223 47
Q ss_pred CCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhcceEEEEecCC
Q 000979 755 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGG 833 (1202)
Q Consensus 755 ~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gG 833 (1202)
+.|||||||++||||++.+|++++||||||+||-.-+.+|+++|+++.++ |.+-++++||+. -+..+||++++|. +|
T Consensus 426 EFSGGQRQRIAIARAliLkP~~i~LDEPTSALD~SVQaQvv~LLr~LQ~k~~LsYLFISHDL~-VvrAl~~~viVm~-~G 503 (534)
T COG4172 426 EFSGGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRDLQQKHGLSYLFISHDLA-VVRALCHRVIVMR-DG 503 (534)
T ss_pred ccCcchhhHHHHHHHHhcCCcEEEecCCchHhhHHHHHHHHHHHHHHHHHhCCeEEEEeccHH-HHHHhhceEEEEe-CC
Confidence 89999999999999999999999999999999999999999999999754 899999999986 4788999999998 48
Q ss_pred EEEEEcCC
Q 000979 834 QEIYVGPL 841 (1202)
Q Consensus 834 ~~~~~G~~ 841 (1202)
++|..||.
T Consensus 504 kiVE~G~~ 511 (534)
T COG4172 504 KIVEQGPT 511 (534)
T ss_pred EEeeeCCH
Confidence 99999996
|
|
| >KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-47 Score=480.75 Aligned_cols=214 Identities=21% Similarity=0.283 Sum_probs=175.8
Q ss_pred CCceeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcC
Q 000979 600 EPHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISG 679 (1202)
Q Consensus 600 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g 679 (1202)
..+.++|+|++.+|. ++-..+|+|||++|+|||.+||+|..|||||||+++|-+... +.+|+|.+||
T Consensus 1135 ~~G~I~f~~~~~RYr-----------p~lp~VLk~is~~I~p~eKVGIVGRTGaGKSSL~~aLFRl~e--~~~G~I~IDg 1201 (1381)
T KOG0054|consen 1135 SKGEIEFEDLSLRYR-----------PNLPLVLKGISFTIKPGEKVGIVGRTGAGKSSLILALFRLVE--PAEGEILIDG 1201 (1381)
T ss_pred CCCeEEEEEeEEEeC-----------CCCcchhcCceEEEcCCceEEEeCCCCCCHHHHHHHHHHhcC--ccCCeEEEcC
Confidence 457899999999984 223468999999999999999999999999999999998765 4689999999
Q ss_pred ccCCc---ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCC-------cccccccc
Q 000979 680 YPKKQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELN-------PLRQSLVG 749 (1202)
Q Consensus 680 ~~~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-------~~~~~~~~ 749 (1202)
.++.+ .++|+.++.+||||.+|. .|+|.||.=. .+.++++ +-+++|..+|. ...|..+.
T Consensus 1202 vdI~~igL~dLRsrlsIIPQdPvLFs-GTvR~NLDPf------~e~sD~~----IW~ALe~~~Lk~~v~~~p~~Ld~~v~ 1270 (1381)
T KOG0054|consen 1202 VDISKIGLHDLRSRLSIIPQDPVLFS-GTVRFNLDPF------DEYSDDE----IWEALERCQLKDVVSSLPGGLDSEVS 1270 (1381)
T ss_pred eecccccHHHHHhcCeeeCCCCceec-CccccccCcc------cccCHHH----HHHHHHHhChHHHHhhCCcCCCceec
Confidence 99765 568899999999999986 7999998521 1223322 34445554443 23455554
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEE
Q 000979 750 LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLM 829 (1202)
Q Consensus 750 ~~~~~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l 829 (1202)
.. ...+|-||||.+++||||+++++||+|||+|++.|+++-..|+++||+-- +++|||.+.|+.+. ..-+|||+||
T Consensus 1271 eg-G~N~SvGQRQLlCLARALLr~skILvLDEATAsVD~~TD~lIQ~tIR~~F-~dcTVltIAHRl~T--Vmd~DrVlVl 1346 (1381)
T KOG0054|consen 1271 EG-GENFSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREEF-KDCTVLTIAHRLNT--VMDSDRVLVL 1346 (1381)
T ss_pred CC-CccCChHHHHHHHHHHHHhccCCEEEEecccccCChHHHHHHHHHHHHHh-cCCeEEEEeeccch--hhhcCeEEEe
Confidence 43 35699999999999999999999999999999999999999999999853 47999999999873 4457999999
Q ss_pred ecCCEEEEEcCCC
Q 000979 830 KRGGQEIYVGPLG 842 (1202)
Q Consensus 830 ~~gG~~~~~G~~~ 842 (1202)
++ |+++.+|+|.
T Consensus 1347 d~-G~v~EfdsP~ 1358 (1381)
T KOG0054|consen 1347 DA-GRVVEFDSPA 1358 (1381)
T ss_pred eC-CeEeecCChH
Confidence 85 8999999984
|
|
| >COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-48 Score=392.51 Aligned_cols=215 Identities=25% Similarity=0.353 Sum_probs=191.2
Q ss_pred eEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCC
Q 000979 604 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 683 (1202)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 683 (1202)
++++|++.+| ++.++|+|||++|++||+++|+||||||||||||||.|+.. +.+|+|.++|.++.
T Consensus 3 i~i~~l~K~f-------------g~~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~--~~~G~I~i~g~~~~ 67 (240)
T COG1126 3 IEIKNLSKSF-------------GDKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEE--PDSGSITVDGEDVG 67 (240)
T ss_pred EEEEeeeEEe-------------CCeEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcC--CCCceEEECCEecc
Confidence 6788988877 45789999999999999999999999999999999999876 45899999997653
Q ss_pred ----cccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHH
Q 000979 684 ----QETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTE 759 (1202)
Q Consensus 684 ----~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgG 759 (1202)
....|+.+|+|+|+..+||++||.||+..+...- .+.++++.++...++|+.+||.+.+|.. +.+||||
T Consensus 68 ~~~~~~~~R~~vGmVFQ~fnLFPHlTvleNv~lap~~v--~~~~k~eA~~~A~~lL~~VGL~~ka~~y-----P~qLSGG 140 (240)
T COG1126 68 DKKDILKLRRKVGMVFQQFNLFPHLTVLENVTLAPVKV--KKLSKAEAREKALELLEKVGLADKADAY-----PAQLSGG 140 (240)
T ss_pred chhhHHHHHHhcCeecccccccccchHHHHHHhhhHHH--cCCCHHHHHHHHHHHHHHcCchhhhhhC-----ccccCcH
Confidence 2346788999999999999999999999875422 2345667777889999999999998886 3589999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCCEEEEEc
Q 000979 760 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVG 839 (1202)
Q Consensus 760 qrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G 839 (1202)
|||||+|||||+.+|+++|+|||||+|||+...++++.+++++++|.|.|++||++. ...+.+|||+.|+ +|+++..|
T Consensus 141 QqQRVAIARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM~-FAr~VadrviFmd-~G~iie~g 218 (240)
T COG1126 141 QQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMG-FAREVADRVIFMD-QGKIIEEG 218 (240)
T ss_pred HHHHHHHHHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechhH-HHHHhhheEEEee-CCEEEEec
Confidence 999999999999999999999999999999999999999999999999999999987 4778899999998 58999999
Q ss_pred CCC
Q 000979 840 PLG 842 (1202)
Q Consensus 840 ~~~ 842 (1202)
+++
T Consensus 219 ~p~ 221 (240)
T COG1126 219 PPE 221 (240)
T ss_pred CHH
Confidence 873
|
|
| >TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-48 Score=469.01 Aligned_cols=221 Identities=18% Similarity=0.281 Sum_probs=177.6
Q ss_pred eEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCC
Q 000979 604 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 683 (1202)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 683 (1202)
++++|+++.|.. .+++.+|+|+||++++||+++|+||||||||||+|+|+|..++ +.+|+|.++|.++.
T Consensus 258 l~~~~l~~~~~~----------~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p-~~~G~i~~~g~~~~ 326 (500)
T TIGR02633 258 LEARNLTCWDVI----------NPHRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPG-KFEGNVFINGKPVD 326 (500)
T ss_pred EEEeCCcccccc----------cccccccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCC-CCCeEEEECCEECC
Confidence 667777765421 0123589999999999999999999999999999999998652 14799999998764
Q ss_pred c----ccccceEEEeecCC---CCCCCCCHHHHHHHHHH--ccCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCCCC
Q 000979 684 Q----ETFARISGYCEQND---IHSPFVTIYESLLFSAW--LRLSPEVDSETRKMFIDEVMELVELNP-LRQSLVGLPGV 753 (1202)
Q Consensus 684 ~----~~~~~~~~~v~q~~---~~~~~lTv~e~l~~~~~--~~~~~~~~~~~~~~~~~~~l~~l~l~~-~~~~~~~~~~~ 753 (1202)
. ...++.++|++|+. .+++.+||+||+.+... ............++.++++++.+++.+ ..++.+
T Consensus 327 ~~~~~~~~~~~i~~v~q~~~~~~l~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~----- 401 (500)
T TIGR02633 327 IRNPAQAIRAGIAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKTASPFLPI----- 401 (500)
T ss_pred CCCHHHHHhCCCEEcCcchhhCCcCCCCCHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhcCccCCCccCcc-----
Confidence 2 12356789999995 57889999999987532 110001122333456789999999964 456553
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCC
Q 000979 754 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGG 833 (1202)
Q Consensus 754 ~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG 833 (1202)
+.||||||||++|||||+.+|++|+|||||+|||+.++..+++.|++++++|.|||++|||++ ++.+.||++++|.+ |
T Consensus 402 ~~LSgGqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~-~~~~~~d~v~~l~~-G 479 (500)
T TIGR02633 402 GRLSGGNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQEGVAIIVVSSELA-EVLGLSDRVLVIGE-G 479 (500)
T ss_pred ccCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEEC-C
Confidence 579999999999999999999999999999999999999999999999888999999999986 67889999999985 7
Q ss_pred EEEEEcCCC
Q 000979 834 QEIYVGPLG 842 (1202)
Q Consensus 834 ~~~~~G~~~ 842 (1202)
+++..++.+
T Consensus 480 ~i~~~~~~~ 488 (500)
T TIGR02633 480 KLKGDFVNH 488 (500)
T ss_pred EEEEEEccc
Confidence 999888764
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). |
| >PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-47 Score=467.16 Aligned_cols=204 Identities=20% Similarity=0.223 Sum_probs=167.9
Q ss_pred EeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCCcc----cccceEEEeecCC---CCCCC
Q 000979 631 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQE----TFARISGYCEQND---IHSPF 703 (1202)
Q Consensus 631 iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~----~~~~~~~~v~q~~---~~~~~ 703 (1202)
+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++... ..++.++|++|++ .+++.
T Consensus 278 ~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~--p~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~l~~~ 355 (510)
T PRK15439 278 GFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRP--ARGGRIMLNGKEINALSTAQRLARGLVYLPEDRQSSGLYLD 355 (510)
T ss_pred CccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCC--CCCcEEEECCEECCCCCHHHHHhCCcEECCCChhhCCccCC
Confidence 3899999999999999999999999999999999866 4479999999875431 1245689999984 47888
Q ss_pred CCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCC
Q 000979 704 VTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELN-PLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEP 782 (1202)
Q Consensus 704 lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-~~~~~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~illlDEP 782 (1202)
+|+.||+.................++.++++++.+++. +..++.+ +.|||||||||+|||||+.+|+|||||||
T Consensus 356 ~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~~LSgG~kqrl~la~al~~~p~lLlLDEP 430 (510)
T PRK15439 356 APLAWNVCALTHNRRGFWIKPARENAVLERYRRALNIKFNHAEQAA-----RTLSGGNQQKVLIAKCLEASPQLLIVDEP 430 (510)
T ss_pred CcHHHHHHhhhhhhhccccChHHHHHHHHHHHHHcCCCCCCccCcc-----ccCCcHHHHHHHHHHHHhhCCCEEEECCC
Confidence 99999986431110010011222335678999999996 5666653 57999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCCEEEEEcCCCc
Q 000979 783 TSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLGR 843 (1202)
Q Consensus 783 tsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G~~~~ 843 (1202)
|+|||+.++..+.+.|++++++|.|||++|||++ ++.+.|||+++|+ +|++++.|.+++
T Consensus 431 t~gLD~~~~~~l~~~l~~l~~~g~tiIivsHd~~-~i~~~~d~i~~l~-~G~i~~~~~~~~ 489 (510)
T PRK15439 431 TRGVDVSARNDIYQLIRSIAAQNVAVLFISSDLE-EIEQMADRVLVMH-QGEISGALTGAA 489 (510)
T ss_pred CcCcChhHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEE-CCEEEEEEcccc
Confidence 9999999999999999999878999999999986 6888999999998 589999998764
|
|
| >PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-47 Score=464.56 Aligned_cols=205 Identities=20% Similarity=0.325 Sum_probs=170.9
Q ss_pred EeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCCc----ccccceEEEeecCC---CCCCC
Q 000979 631 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ----ETFARISGYCEQND---IHSPF 703 (1202)
Q Consensus 631 iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~----~~~~~~~~~v~q~~---~~~~~ 703 (1202)
+++|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|+++.. ...++.++|++|++ .+++.
T Consensus 268 ~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~--p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~ 345 (501)
T PRK11288 268 LREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATR--RTAGQVYLDGKPIDIRSPRDAIRAGIMLCPEDRKAEGIIPV 345 (501)
T ss_pred cccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCc--CCCceEEECCEECCCCCHHHHHhCCCEEcCcCHhhCCCcCC
Confidence 6999999999999999999999999999999999876 458999999987532 12345789999986 48888
Q ss_pred CCHHHHHHHHHHccC-CCC--CCHHHHHHHHHHHHHHcCCC-ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEE
Q 000979 704 VTIYESLLFSAWLRL-SPE--VDSETRKMFIDEVMELVELN-PLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFM 779 (1202)
Q Consensus 704 lTv~e~l~~~~~~~~-~~~--~~~~~~~~~~~~~l~~l~l~-~~~~~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~illl 779 (1202)
+|+.||+.+...... ... ......++.++++++.+++. +..++.+ ..|||||||||+|||+|+.+|+||||
T Consensus 346 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~~LSgGq~qrl~la~al~~~p~lllL 420 (501)
T PRK11288 346 HSVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIKTPSREQLI-----MNLSGGNQQKAILGRWLSEDMKVILL 420 (501)
T ss_pred CCHHHHhccccchhhcccccccChHHHHHHHHHHHHhcCcccCCccCcc-----ccCCHHHHHHHHHHHHHccCCCEEEE
Confidence 999999987532111 000 11222335678899999994 5666654 47999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCCEEEEEcCCCcc
Q 000979 780 DEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLGRH 844 (1202)
Q Consensus 780 DEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G~~~~~ 844 (1202)
||||+|||+.++..+++.|++++++|.|||++|||++ ++.+.||++++|.+ |++++.|++++.
T Consensus 421 DEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~-~~~~~~d~i~~l~~-g~i~~~~~~~~~ 483 (501)
T PRK11288 421 DEPTRGIDVGAKHEIYNVIYELAAQGVAVLFVSSDLP-EVLGVADRIVVMRE-GRIAGELAREQA 483 (501)
T ss_pred cCCCCCCCHhHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHhhCCEEEEEEC-CEEEEEEccccC
Confidence 9999999999999999999999888999999999986 58899999999984 899999998754
|
|
| >PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-47 Score=458.71 Aligned_cols=216 Identities=19% Similarity=0.293 Sum_probs=168.5
Q ss_pred eeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccC
Q 000979 603 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 682 (1202)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 682 (1202)
.++++|+++.|. ++.+|+|+||++++||+++|+||||||||||+|+|+|..++ +.+|+|.++|.+.
T Consensus 260 ~l~~~~l~~~~~-------------~~~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~-~~~G~i~~~g~~~ 325 (490)
T PRK10938 260 RIVLNNGVVSYN-------------DRPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQ-GYSNDLTLFGRRR 325 (490)
T ss_pred eEEEeceEEEEC-------------CeeEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCc-ccCCeEEEecccC
Confidence 378899998873 23589999999999999999999999999999999996531 1479999999764
Q ss_pred Cc----ccccceEEEeecCCCCCCC--CCHHHHHHHHHHc--cCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCCCC
Q 000979 683 KQ----ETFARISGYCEQNDIHSPF--VTIYESLLFSAWL--RLSPEVDSETRKMFIDEVMELVELNP-LRQSLVGLPGV 753 (1202)
Q Consensus 683 ~~----~~~~~~~~~v~q~~~~~~~--lTv~e~l~~~~~~--~~~~~~~~~~~~~~~~~~l~~l~l~~-~~~~~~~~~~~ 753 (1202)
.. ...++.++|++|++.+++. .|+++++.+.... ....... .+.+++++++++.+++.+ ..++.+
T Consensus 326 ~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~~~~~~~----- 399 (490)
T PRK10938 326 GSGETIWDIKKHIGYVSSSLHLDYRVSTSVRNVILSGFFDSIGIYQAVS-DRQQKLAQQWLDILGIDKRTADAPF----- 399 (490)
T ss_pred CCCCCHHHHHhhceEECHHHHhhcccCCcHHHHHHhccccccccccCCC-HHHHHHHHHHHHHcCCchhhccCch-----
Confidence 21 1235678999998765433 5677666543210 1111112 223456789999999986 666653
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCC-CEEEEEecCCCHHHHH-hcceEEEEec
Q 000979 754 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTG-RTVVCTIHQPSIDIFE-AFDELFLMKR 831 (1202)
Q Consensus 754 ~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g-~tvi~~~H~~~~~~~~-~~d~v~~l~~ 831 (1202)
+.|||||||||+|||||+.+|++|+|||||+|||+.++..+.+.|++++++| .|||++||+++ ++.+ .+|++++|.+
T Consensus 400 ~~LSgGq~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~L~~l~~~~~~tviivsHd~~-~~~~~~~d~v~~l~~ 478 (490)
T PRK10938 400 HSLSWGQQRLALIVRALVKHPTLLILDEPLQGLDPLNRQLVRRFVDVLISEGETQLLFVSHHAE-DAPACITHRLEFVPD 478 (490)
T ss_pred hhCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCcEEEEEecchh-hhhhhhheeEEEecC
Confidence 5799999999999999999999999999999999999999999999998775 47999999986 4655 5899999985
Q ss_pred CCEEEEEcC
Q 000979 832 GGQEIYVGP 840 (1202)
Q Consensus 832 gG~~~~~G~ 840 (1202)
|+++..-.
T Consensus 479 -G~i~~~~~ 486 (490)
T PRK10938 479 -GDIYRYVQ 486 (490)
T ss_pred -CceEEeec
Confidence 78776543
|
|
| >PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-46 Score=456.33 Aligned_cols=215 Identities=17% Similarity=0.255 Sum_probs=171.4
Q ss_pred eEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCC
Q 000979 604 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 683 (1202)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 683 (1202)
++++|+++.+ +.+|+|||+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.
T Consensus 251 i~~~~l~~~~---------------~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i~ 313 (491)
T PRK10982 251 LEVRNLTSLR---------------QPSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIRE--KSAGTITLHGKKIN 313 (491)
T ss_pred EEEeCccccc---------------CcccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCc--CCccEEEECCEECC
Confidence 6677777642 137999999999999999999999999999999999876 45899999998764
Q ss_pred cc----cccceEEEeecCC---CCCCCCCHHHHHHHHHH--ccCCCC-CCHHHHHHHHHHHHHHcCCC-ccccccccCCC
Q 000979 684 QE----TFARISGYCEQND---IHSPFVTIYESLLFSAW--LRLSPE-VDSETRKMFIDEVMELVELN-PLRQSLVGLPG 752 (1202)
Q Consensus 684 ~~----~~~~~~~~v~q~~---~~~~~lTv~e~l~~~~~--~~~~~~-~~~~~~~~~~~~~l~~l~l~-~~~~~~~~~~~ 752 (1202)
.. ..++.++|++|++ .+++.+|+.+|..+... ...... ......++.++++++.+++. +..++.
T Consensus 314 ~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~----- 388 (491)
T PRK10982 314 NHNANEAINHGFALVTEERRSTGIYAYLDIGFNSLISNIRNYKNKVGLLDNSRMKSDTQWVIDSMRVKTPGHRTQ----- 388 (491)
T ss_pred CCCHHHHHHCCCEEcCCchhhCCcccCCcHHHheehhhhhhhcccccccCcHHHHHHHHHHHHhcCccCCCcccc-----
Confidence 31 1245689999985 46788888877433210 000001 12223345678889999985 344554
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecC
Q 000979 753 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 832 (1202)
Q Consensus 753 ~~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~g 832 (1202)
+..|||||||||+|||+|+.+|+||||||||+|||+.++..+++.|+++.++|.|||++||+++ ++.++|||+++|.+
T Consensus 389 ~~~LSgGq~qrv~la~al~~~p~illLDEPt~gLD~~~~~~~~~~l~~l~~~~~tvi~vsHd~~-~~~~~~d~v~~l~~- 466 (491)
T PRK10982 389 IGSLSGGNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKKDKGIIIISSEMP-ELLGITDRILVMSN- 466 (491)
T ss_pred cccCCcHHHHHHHHHHHHhcCCCEEEEcCCCcccChhHHHHHHHHHHHHHHCCCEEEEECCChH-HHHhhCCEEEEEEC-
Confidence 3579999999999999999999999999999999999999999999999888999999999986 57889999999985
Q ss_pred CEEEEEcCCC
Q 000979 833 GQEIYVGPLG 842 (1202)
Q Consensus 833 G~~~~~G~~~ 842 (1202)
|+++..++++
T Consensus 467 g~i~~~~~~~ 476 (491)
T PRK10982 467 GLVAGIVDTK 476 (491)
T ss_pred CEEEEEEccc
Confidence 8999888764
|
|
| >COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-45 Score=390.40 Aligned_cols=219 Identities=23% Similarity=0.322 Sum_probs=194.7
Q ss_pred eEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCC
Q 000979 604 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 683 (1202)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 683 (1202)
+++++|++.|... ..+...+|+|||++|++||++||+|+||||||||+|++.++.. |.+|+|.++|.++.
T Consensus 2 I~l~~vsK~~~~~--------~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~--PtsG~v~v~G~di~ 71 (339)
T COG1135 2 IELENVSKTFGQT--------GTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLER--PTSGSVFVDGQDLT 71 (339)
T ss_pred eEEEeeeeeeccC--------CCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCC--CCCceEEEcCEecc
Confidence 6789999887531 1234679999999999999999999999999999999999876 55899999997754
Q ss_pred c------ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCC
Q 000979 684 Q------ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLS 757 (1202)
Q Consensus 684 ~------~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LS 757 (1202)
. +..|+.+|+++|+..++...||.||+.|...+.. .+++++++++.++++.+||.+.++.. +.+||
T Consensus 72 ~l~~~~Lr~~R~~IGMIFQhFnLLssrTV~~NvA~PLeiag---~~k~ei~~RV~elLelVgL~dk~~~y-----P~qLS 143 (339)
T COG1135 72 ALSEAELRQLRQKIGMIFQHFNLLSSRTVFENVAFPLELAG---VPKAEIKQRVAELLELVGLSDKADRY-----PAQLS 143 (339)
T ss_pred cCChHHHHHHHhhccEEeccccccccchHHhhhhhhHhhcC---CCHHHHHHHHHHHHHHcCChhhhccC-----chhcC
Confidence 3 3467899999999999999999999999987763 56788899999999999999888876 35899
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhcceEEEEecCCEEE
Q 000979 758 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEI 836 (1202)
Q Consensus 758 gGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~ 836 (1202)
|||||||+|||||+.+|+|||+|||||+|||++...|+++|+++.++ |.||+++||+++ -+.+.|||+.+|++ |+++
T Consensus 144 GGQKQRVaIARALa~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITHEm~-Vvk~ic~rVavm~~-G~lv 221 (339)
T COG1135 144 GGQKQRVAIARALANNPKILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHEME-VVKRICDRVAVLDQ-GRLV 221 (339)
T ss_pred cchhhHHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEechHH-HHHHHhhhheEeeC-CEEE
Confidence 99999999999999999999999999999999999999999999765 999999999986 47889999999985 8999
Q ss_pred EEcCCC
Q 000979 837 YVGPLG 842 (1202)
Q Consensus 837 ~~G~~~ 842 (1202)
..|+..
T Consensus 222 E~G~v~ 227 (339)
T COG1135 222 EEGTVS 227 (339)
T ss_pred EeccHH
Confidence 999974
|
|
| >COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-45 Score=377.87 Aligned_cols=215 Identities=26% Similarity=0.364 Sum_probs=193.8
Q ss_pred eEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCC
Q 000979 604 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 683 (1202)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 683 (1202)
++|+||++.|. ++.+++|+|++|++||+++++|||||||||+||+|.+... +.+|+|.+||.++.
T Consensus 2 I~~~nvsk~y~-------------~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLie--pt~G~I~i~g~~i~ 66 (309)
T COG1125 2 IEFENVSKRYG-------------NKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIE--PTSGEILIDGEDIS 66 (309)
T ss_pred ceeeeeehhcC-------------CceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccC--CCCceEEECCeecc
Confidence 67899998773 4578999999999999999999999999999999999877 56999999999876
Q ss_pred c---ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCc--cccccccCCCCCCCCH
Q 000979 684 Q---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP--LRQSLVGLPGVSGLST 758 (1202)
Q Consensus 684 ~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~--~~~~~~~~~~~~~LSg 758 (1202)
. ...|+.+|||-|.-.+||++||.||+.+-..+. +.++++.+++++|+++.+||.+ +.++. +++|||
T Consensus 67 ~~d~~~LRr~IGYviQqigLFPh~Tv~eNIa~VP~L~---~w~k~~i~~r~~ELl~lvgL~p~~~~~Ry-----P~eLSG 138 (309)
T COG1125 67 DLDPVELRRKIGYVIQQIGLFPHLTVAENIATVPKLL---GWDKERIKKRADELLDLVGLDPSEYADRY-----PHELSG 138 (309)
T ss_pred cCCHHHHHHhhhhhhhhcccCCCccHHHHHHhhhhhc---CCCHHHHHHHHHHHHHHhCCCHHHHhhcC-----chhcCc
Confidence 4 457899999999999999999999999876655 4567788889999999999974 55654 478999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhcceEEEEecCCEEEE
Q 000979 759 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIY 837 (1202)
Q Consensus 759 GqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~ 837 (1202)
||+|||.+||||+.+|+|||+|||+++|||.++..+++.++++.++ |+|||++|||.+ |.+.+.||+++|+ +|+++.
T Consensus 139 GQQQRVGv~RALAadP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDid-EA~kLadri~vm~-~G~i~Q 216 (309)
T COG1125 139 GQQQRVGVARALAADPPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDID-EALKLADRIAVMD-AGEIVQ 216 (309)
T ss_pred chhhHHHHHHHHhcCCCeEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHH-HHHhhhceEEEec-CCeEEE
Confidence 9999999999999999999999999999999999999999999765 999999999997 7899999999998 589999
Q ss_pred EcCCCc
Q 000979 838 VGPLGR 843 (1202)
Q Consensus 838 ~G~~~~ 843 (1202)
+|+|++
T Consensus 217 ~~~P~~ 222 (309)
T COG1125 217 YDTPDE 222 (309)
T ss_pred eCCHHH
Confidence 999864
|
|
| >COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-45 Score=379.79 Aligned_cols=204 Identities=25% Similarity=0.371 Sum_probs=181.7
Q ss_pred eeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccC
Q 000979 603 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 682 (1202)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 682 (1202)
.+.+++++++|. ...+|+|||++|++||+++|+||||||||||||+|+|..+ +.+|+|.++|.++
T Consensus 3 ~l~i~~v~~~f~-------------~~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~--p~~G~V~~~g~~v 67 (248)
T COG1116 3 LLEIEGVSKSFG-------------GVEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEK--PTSGEVLLDGRPV 67 (248)
T ss_pred eEEEEeeEEEeC-------------ceEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCccc
Confidence 467888888874 2679999999999999999999999999999999999887 5589999999987
Q ss_pred CcccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHH
Q 000979 683 KQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRK 762 (1202)
Q Consensus 683 ~~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrq 762 (1202)
. .....++||+|++.++|.+||+||+.++...+. .+++++++++++.++.+||.+..|.. +++|||||||
T Consensus 68 ~--~p~~~~~~vFQ~~~LlPW~Tv~~NV~l~l~~~~---~~~~e~~~~a~~~L~~VgL~~~~~~~-----P~qLSGGMrQ 137 (248)
T COG1116 68 T--GPGPDIGYVFQEDALLPWLTVLDNVALGLELRG---KSKAEARERAKELLELVGLAGFEDKY-----PHQLSGGMRQ 137 (248)
T ss_pred C--CCCCCEEEEeccCcccchhhHHhhheehhhccc---cchHhHHHHHHHHHHHcCCcchhhcC-----ccccChHHHH
Confidence 3 235678999999999999999999999987653 34556667899999999999998886 4689999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCCHHHHHhcceEEEEecC
Q 000979 763 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKRG 832 (1202)
Q Consensus 763 Rv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~v~~l~~g 832 (1202)
||+|||||+.+|+||+||||+++||+.++..+++.|.++.+ .++||+++|||.+ |...+.|||++|.++
T Consensus 138 RVaiARAL~~~P~lLLlDEPFgALDalTR~~lq~~l~~lw~~~~~TvllVTHdi~-EAv~LsdRivvl~~~ 207 (248)
T COG1116 138 RVAIARALATRPKLLLLDEPFGALDALTREELQDELLRLWEETRKTVLLVTHDVD-EAVYLADRVVVLSNR 207 (248)
T ss_pred HHHHHHHHhcCCCEEEEcCCcchhhHHHHHHHHHHHHHHHHhhCCEEEEEeCCHH-HHHhhhCEEEEecCC
Confidence 99999999999999999999999999999999999998864 5899999999997 788899999999863
|
|
| >COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-45 Score=372.30 Aligned_cols=230 Identities=26% Similarity=0.365 Sum_probs=199.6
Q ss_pred ceeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCcc
Q 000979 602 HSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP 681 (1202)
Q Consensus 602 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 681 (1202)
..+++++|++++ +.++|++|||++|++||+++|+||||+|||||||+|.|+.. |.+|+|.++|.+
T Consensus 7 ~~I~vr~v~~~f-------------G~~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~--P~~GeI~i~G~~ 71 (263)
T COG1127 7 PLIEVRGVTKSF-------------GDRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLR--PDKGEILIDGED 71 (263)
T ss_pred ceEEEeeeeeec-------------CCEEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCC--CCCCeEEEcCcc
Confidence 358899999876 56789999999999999999999999999999999999887 558999999998
Q ss_pred CCc------ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCcc-ccccccCCCCC
Q 000979 682 KKQ------ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPL-RQSLVGLPGVS 754 (1202)
Q Consensus 682 ~~~------~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~-~~~~~~~~~~~ 754 (1202)
+.+ ...++.+|+++|+-.+|..+||+||+.|..+ .....+++..++.+..-++.+||... .+.. +.
T Consensus 72 i~~ls~~~~~~ir~r~GvlFQ~gALFssltV~eNVafplr--e~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~-----Ps 144 (263)
T COG1127 72 IPQLSEEELYEIRKRMGVLFQQGALFSSLTVFENVAFPLR--EHTKLPESLIRELVLMKLELVGLRGAAADLY-----PS 144 (263)
T ss_pred hhccCHHHHHHHHhheeEEeeccccccccchhHhhheehH--hhccCCHHHHHHHHHHHHHhcCCChhhhhhC-----ch
Confidence 653 2356789999999999999999999998753 33456667777778888999999876 5554 46
Q ss_pred CCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhcceEEEEecCC
Q 000979 755 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGG 833 (1202)
Q Consensus 755 ~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gG 833 (1202)
+|||||+||+++|||++.||+||++||||+||||.++..+-++++++.+. |.|++++|||.+ +++..|||+++|.+ |
T Consensus 145 ELSGGM~KRvaLARAialdPell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl~-s~~~i~Drv~~L~~-g 222 (263)
T COG1127 145 ELSGGMRKRVALARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDLD-SLLTIADRVAVLAD-G 222 (263)
T ss_pred hhcchHHHHHHHHHHHhcCCCEEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEECChH-HHHhhhceEEEEeC-C
Confidence 89999999999999999999999999999999999999999999999876 999999999997 69999999999985 8
Q ss_pred EEEEEcCCCcc----chhHHHHHhhC
Q 000979 834 QEIYVGPLGRH----SCHLISYFEAI 855 (1202)
Q Consensus 834 ~~~~~G~~~~~----~~~~~~~f~~~ 855 (1202)
++++.|++++. ...+.+||...
T Consensus 223 kv~~~Gt~~el~~sd~P~v~qf~~G~ 248 (263)
T COG1127 223 KVIAEGTPEELLASDDPWVRQFFNGI 248 (263)
T ss_pred EEEEeCCHHHHHhCCCHHHHHHhcCC
Confidence 99999998652 23467787654
|
|
| >KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-45 Score=423.53 Aligned_cols=250 Identities=25% Similarity=0.407 Sum_probs=208.0
Q ss_pred CCCccccccccchhhhhhhhhccCCCCCCCccC-CCCceeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeE
Q 000979 566 STDDIRGQQSSSQSLSLAEAEASRPKKKGMVLP-FEPHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVL 644 (1202)
Q Consensus 566 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~ 644 (1202)
..+.+++..++.+.++..++++..+.. |...| ...+.++|+||+|+||.+| +.++|+|+||+|+|||+
T Consensus 428 ys~lmkgvGAs~rvFel~dr~P~i~~~-G~~~p~~~~G~IeF~~VsFaYP~Rp----------~~~Vlk~lsfti~pGe~ 496 (716)
T KOG0058|consen 428 YSELMKGVGASERVFELMDRKPRIPLT-GTLAPDHLQGVIEFEDVSFAYPTRP----------DVPVLKNLSFTIRPGEV 496 (716)
T ss_pred HHHHHHhcchHHHHHHHhccCCCCCCC-CccccccccceEEEEEeeeecCCCC----------CchhhcCceeeeCCCCE
Confidence 345566777888999998877765554 55555 3567899999999999775 34579999999999999
Q ss_pred EEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCCc---ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCC
Q 000979 645 TALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPE 721 (1202)
Q Consensus 645 ~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~ 721 (1202)
+|||||||+||||+.++|...++ |.+|+|.+||.|+++ ..+|+++|+|.|||.+|. -||+|||.|+.. .
T Consensus 497 vALVGPSGsGKSTiasLL~rfY~--PtsG~IllDG~~i~~~~~~~lr~~Ig~V~QEPvLFs-~sI~eNI~YG~~-----~ 568 (716)
T KOG0058|consen 497 VALVGPSGSGKSTIASLLLRFYD--PTSGRILLDGVPISDINHKYLRRKIGLVGQEPVLFS-GSIRENIAYGLD-----N 568 (716)
T ss_pred EEEECCCCCCHHHHHHHHHHhcC--CCCCeEEECCeehhhcCHHHHHHHeeeeeccceeec-ccHHHHHhcCCC-----C
Confidence 99999999999999999976655 679999999999765 457899999999999986 799999999853 3
Q ss_pred CCHHHHH-----HHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHH
Q 000979 722 VDSETRK-----MFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR 796 (1202)
Q Consensus 722 ~~~~~~~-----~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~ 796 (1202)
.++++.. +.+.+.+. ++.+-.||.+|..|. .||||||||+||||||++||+||||||+||+||++++..|.+
T Consensus 569 ~t~e~i~~AAk~ANah~FI~--~~p~gY~T~VGEkG~-qLSGGQKQRIAIARALlr~P~VLILDEATSALDaeSE~lVq~ 645 (716)
T KOG0058|consen 569 ATDEEIEAAAKMANAHEFIT--NFPDGYNTVVGEKGS-QLSGGQKQRIAIARALLRNPRVLILDEATSALDAESEYLVQE 645 (716)
T ss_pred CCHHHHHHHHHHhChHHHHH--hCccccccccCCccc-cccchHHHHHHHHHHHhcCCCEEEEechhhhcchhhHHHHHH
Confidence 3333322 22233333 566778999998765 599999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCCEEEEEcCC
Q 000979 797 TVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPL 841 (1202)
Q Consensus 797 ~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G~~ 841 (1202)
.|.++.+ ++|||++.|.++ ..+.+|+|+++++ |+++..|+-
T Consensus 646 aL~~~~~-~rTVlvIAHRLS--TV~~Ad~Ivvi~~-G~V~E~G~h 686 (716)
T KOG0058|consen 646 ALDRLMQ-GRTVLVIAHRLS--TVRHADQIVVIDK-GRVVEMGTH 686 (716)
T ss_pred HHHHhhc-CCeEEEEehhhh--HhhhccEEEEEcC-CeEEecccH
Confidence 9998754 699999999986 5789999999985 899999974
|
|
| >PRK15064 ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-43 Score=431.51 Aligned_cols=198 Identities=18% Similarity=0.259 Sum_probs=164.7
Q ss_pred eeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccC
Q 000979 603 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 682 (1202)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 682 (1202)
.++++|++++|. ++.+|+|+||++++||+++|+||||||||||+++|+|... +.+|+|.++|.
T Consensus 319 ~l~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~--p~~G~i~~~~~-- 381 (530)
T PRK15064 319 ALEVENLTKGFD-------------NGPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELE--PDSGTVKWSEN-- 381 (530)
T ss_pred eEEEEeeEEeeC-------------CceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEECCc--
Confidence 488999999873 2358999999999999999999999999999999999876 45799999873
Q ss_pred CcccccceEEEeecCCC--CCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCCCCCCCCHH
Q 000979 683 KQETFARISGYCEQNDI--HSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELN-PLRQSLVGLPGVSGLSTE 759 (1202)
Q Consensus 683 ~~~~~~~~~~~v~q~~~--~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-~~~~~~~~~~~~~~LSgG 759 (1202)
+.+||++|++. +.+.+|++|++.+.. . .. . .++.++++++.+++. +..++. +..||||
T Consensus 382 ------~~i~~~~q~~~~~~~~~~t~~~~~~~~~---~-~~-~---~~~~~~~~l~~~~l~~~~~~~~-----~~~LSgG 442 (530)
T PRK15064 382 ------ANIGYYAQDHAYDFENDLTLFDWMSQWR---Q-EG-D---DEQAVRGTLGRLLFSQDDIKKS-----VKVLSGG 442 (530)
T ss_pred ------eEEEEEcccccccCCCCCcHHHHHHHhc---c-CC-c---cHHHHHHHHHHcCCChhHhcCc-----ccccCHH
Confidence 45899999864 556799999986421 1 11 1 123467899999984 455554 3579999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCCEEE-EE
Q 000979 760 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEI-YV 838 (1202)
Q Consensus 760 qrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~-~~ 838 (1202)
||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++ +.|||++|||++ .+.+.||++++|.+ |+++ +.
T Consensus 443 q~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~-~~~~~~d~i~~l~~-g~i~~~~ 517 (530)
T PRK15064 443 EKGRMLFGKLMMQKPNVLVMDEPTNHMDMESIESLNMALEKY---EGTLIFVSHDRE-FVSSLATRIIEITP-DGVVDFS 517 (530)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHC---CCEEEEEeCCHH-HHHHhCCEEEEEEC-CeEEEcC
Confidence 999999999999999999999999999999999999999876 359999999986 57788999999985 6887 77
Q ss_pred cCC
Q 000979 839 GPL 841 (1202)
Q Consensus 839 G~~ 841 (1202)
|++
T Consensus 518 g~~ 520 (530)
T PRK15064 518 GTY 520 (530)
T ss_pred CCH
Confidence 875
|
|
| >PRK11819 putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-43 Score=428.45 Aligned_cols=201 Identities=21% Similarity=0.295 Sum_probs=164.5
Q ss_pred eeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccC
Q 000979 603 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 682 (1202)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 682 (1202)
.++++|+++.|. ++.+|+||||++++||+++|+||||||||||+++|+|... +.+|+|.+++ +
T Consensus 324 ~l~~~~l~~~~~-------------~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~--p~~G~i~~~~-~- 386 (556)
T PRK11819 324 VIEAENLSKSFG-------------DRLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQ--PDSGTIKIGE-T- 386 (556)
T ss_pred EEEEEeEEEEEC-------------CeeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEECC-c-
Confidence 488999998873 2468999999999999999999999999999999999876 4589999843 2
Q ss_pred CcccccceEEEeecCC-CCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCCCCCCCCHHH
Q 000979 683 KQETFARISGYCEQND-IHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP-LRQSLVGLPGVSGLSTEQ 760 (1202)
Q Consensus 683 ~~~~~~~~~~~v~q~~-~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~-~~~~~~~~~~~~~LSgGq 760 (1202)
..+||++|++ .+++.+||+||+.+...... .... +...+++++.+++.+ ..++. +..|||||
T Consensus 387 ------~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~---~~~~--~~~~~~~l~~~~l~~~~~~~~-----~~~LSgG~ 450 (556)
T PRK11819 387 ------VKLAYVDQSRDALDPNKTVWEEISGGLDIIK---VGNR--EIPSRAYVGRFNFKGGDQQKK-----VGVLSGGE 450 (556)
T ss_pred ------eEEEEEeCchhhcCCCCCHHHHHHhhccccc---cccc--HHHHHHHHHhCCCChhHhcCc-----hhhCCHHH
Confidence 1489999996 67888999999988643221 1111 122457899999964 34554 35799999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCCEEE-EEc
Q 000979 761 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEI-YVG 839 (1202)
Q Consensus 761 rqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~-~~G 839 (1202)
|||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++. | |||++||+++ .+.+.||++++|++||++. +.|
T Consensus 451 ~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~--~-tvi~vtHd~~-~~~~~~d~i~~l~~~g~~~~~~g 526 (556)
T PRK11819 451 RNRLHLAKTLKQGGNVLLLDEPTNDLDVETLRALEEALLEFP--G-CAVVISHDRW-FLDRIATHILAFEGDSQVEWFEG 526 (556)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhCC--C-eEEEEECCHH-HHHHhCCEEEEEECCCeEEEecC
Confidence 999999999999999999999999999999999999999862 4 8999999986 5788899999998667776 455
Q ss_pred C
Q 000979 840 P 840 (1202)
Q Consensus 840 ~ 840 (1202)
+
T Consensus 527 ~ 527 (556)
T PRK11819 527 N 527 (556)
T ss_pred C
Confidence 4
|
|
| >COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-44 Score=377.76 Aligned_cols=217 Identities=26% Similarity=0.437 Sum_probs=186.8
Q ss_pred eeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccC
Q 000979 603 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 682 (1202)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 682 (1202)
.++++|+++.|. .+ ++|+||||++++||+++|+||||||||||+|+|.|..+ +.+|+|.++|.+.
T Consensus 4 ~i~v~nl~v~y~------------~~-~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~--p~~G~i~~~g~~~ 68 (254)
T COG1121 4 MIEVENLTVSYG------------NR-PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLK--PSSGEIKIFGKPV 68 (254)
T ss_pred EEEEeeeEEEEC------------CE-eeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCc--CCcceEEEccccc
Confidence 588999999984 22 58999999999999999999999999999999999776 5689999999987
Q ss_pred CcccccceEEEeecCC---CCCCCCCHHHHHHHHHHccC--CCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCC
Q 000979 683 KQETFARISGYCEQND---IHSPFVTIYESLLFSAWLRL--SPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLS 757 (1202)
Q Consensus 683 ~~~~~~~~~~~v~q~~---~~~~~lTv~e~l~~~~~~~~--~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LS 757 (1202)
....-+..+|||||.. .-+| +||+|-+..+...+. -...+++ .++.++++|+.+|+.+.+|+.+| +||
T Consensus 69 ~~~~~~~~IgYVPQ~~~~d~~fP-~tV~d~V~~g~~~~~g~~~~~~~~-d~~~v~~aL~~Vgm~~~~~r~i~-----~LS 141 (254)
T COG1121 69 RKRRKRLRIGYVPQKSSVDRSFP-ITVKDVVLLGRYGKKGWFRRLNKK-DKEKVDEALERVGMEDLRDRQIG-----ELS 141 (254)
T ss_pred cccccCCeEEEcCcccccCCCCC-cCHHHHHHccCcccccccccccHH-HHHHHHHHHHHcCchhhhCCccc-----ccC
Confidence 6544457899999964 2233 799999988743222 1122333 36779999999999999999875 699
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCCEEEE
Q 000979 758 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIY 837 (1202)
Q Consensus 758 gGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~ 837 (1202)
|||+|||-|||||+.+|++|+|||||+|+|+.++..+.++|++++++|+||++++||++ .+.+.||+++.|+ +++++
T Consensus 142 GGQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~tIl~vtHDL~-~v~~~~D~vi~Ln--~~~~~ 218 (254)
T COG1121 142 GGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLG-LVMAYFDRVICLN--RHLIA 218 (254)
T ss_pred cHHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCcH-HhHhhCCEEEEEc--CeeEe
Confidence 99999999999999999999999999999999999999999999988999999999998 5899999999996 48999
Q ss_pred EcCCCcc
Q 000979 838 VGPLGRH 844 (1202)
Q Consensus 838 ~G~~~~~ 844 (1202)
.|++++.
T Consensus 219 ~G~~~~~ 225 (254)
T COG1121 219 SGPPEEV 225 (254)
T ss_pred ccChhhc
Confidence 9999753
|
|
| >KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-44 Score=438.87 Aligned_cols=268 Identities=27% Similarity=0.388 Sum_probs=217.6
Q ss_pred ccccccCCCCCCCCCCCCCCccccccccchhhhhhhhhccCCCC--CCCccCCCCceeEEeeeEEEEecCchhhhccccc
Q 000979 549 VQLSTLGGSSNHNTRSGSTDDIRGQQSSSQSLSLAEAEASRPKK--KGMVLPFEPHSLTFDEVVYSVDMPEEMKVQGVLE 626 (1202)
Q Consensus 549 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 626 (1202)
+.+++.++.+.++..+..+...+++.++..+++..+..+..+.. .+.......+.++|+||+|+||.+++
T Consensus 294 ~~~vl~g~~sLgqa~p~l~~f~~a~~aa~~I~~~i~~~~~i~~~~~~~~~~~~~~g~ief~nV~FsYPsRpd-------- 365 (1228)
T KOG0055|consen 294 FFSVLIGGMSLGQASPHLSAFAKARAAAYRIFETIDRKPSIDPYSKGGRVLSSIKGEIEFRNVCFSYPSRPD-------- 365 (1228)
T ss_pred EeehhhhhhhhhccccchHHHhccccchHHHHHHhcCCCCCCcccccCCcccccccceEEEEEEecCCCCCc--------
Confidence 45566788888888777777778888888888887655443322 22233446778999999999997653
Q ss_pred CceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCCc---ccccceEEEeecCCCCCCC
Q 000979 627 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ---ETFARISGYCEQNDIHSPF 703 (1202)
Q Consensus 627 ~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~---~~~~~~~~~v~q~~~~~~~ 703 (1202)
..||+|+|++|++||.+||+|||||||||++++|.+..+ |.+|+|.+||.+++. +.+|..+|.|.|+|.+|.
T Consensus 366 --v~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~Rfyd--P~~G~V~idG~di~~~~~~~lr~~iglV~QePvlF~- 440 (1228)
T KOG0055|consen 366 --VKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYD--PTSGEVLIDGEDIRNLNLKWLRSQIGLVSQEPVLFA- 440 (1228)
T ss_pred --chhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHhcC--CCCceEEEcCccchhcchHHHHhhcCeeeechhhhc-
Confidence 457999999999999999999999999999999998766 679999999998764 456789999999997774
Q ss_pred CCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHH-------cCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCE
Q 000979 704 VTIYESLLFSAWLRLSPEVDSETRKMFIDEVMEL-------VELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSI 776 (1202)
Q Consensus 704 lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~-------l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~i 776 (1202)
.|++||+.|+. ++.+.++ ++++.+. ..+.+..|+.+|..++. ||||||||+||||||++||+|
T Consensus 441 ~tI~eNI~~G~-----~dat~~~----i~~a~k~ana~~fi~~lp~g~~T~vge~g~q-LSGGQKQRIAIARalv~~P~I 510 (1228)
T KOG0055|consen 441 TTIRENIRYGK-----PDATREE----IEEAAKAANAHDFILKLPDGYDTLVGERGVQ-LSGGQKQRIAIARALVRNPKI 510 (1228)
T ss_pred ccHHHHHhcCC-----CcccHHH----HHHHHHHccHHHHHHhhHHhhcccccCCCCC-CChHHHHHHHHHHHHHhCCCE
Confidence 89999999862 2333332 2222222 34566778999987764 999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCCEEEEEcCCCc
Q 000979 777 IFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLGR 843 (1202)
Q Consensus 777 lllDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G~~~~ 843 (1202)
||||||||+||+++++.|+++|+++ .+|+|.|+++|+++ .+ +.+|++++|++ |+++..|..+|
T Consensus 511 LLLDEaTSaLD~~se~~Vq~ALd~~-~~grTTivVaHRLS-tI-rnaD~I~v~~~-G~IvE~G~h~E 573 (1228)
T KOG0055|consen 511 LLLDEATSALDAESERVVQEALDKA-SKGRTTIVVAHRLS-TI-RNADKIAVMEE-GKIVEQGTHDE 573 (1228)
T ss_pred EEecCcccccCHHHHHHHHHHHHHh-hcCCeEEEEeeehh-hh-hccCEEEEEEC-CEEEEecCHHH
Confidence 9999999999999999999999886 56999999999987 34 55999999985 89999999754
|
|
| >COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-44 Score=366.04 Aligned_cols=222 Identities=26% Similarity=0.336 Sum_probs=189.8
Q ss_pred eeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccC
Q 000979 603 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 682 (1202)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 682 (1202)
.++++||+..|| +++++|+|||++|++||++||+||||||||||||+|.|..+ +.+|+|.++|.++
T Consensus 3 ~i~~~nl~k~yp------------~~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d--~t~G~i~~~g~~i 68 (258)
T COG3638 3 MIEVKNLSKTYP------------GGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVD--PTSGEILFNGVQI 68 (258)
T ss_pred eEEEeeeeeecC------------CCceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccC--CCcceEEecccch
Confidence 478999998885 45689999999999999999999999999999999999766 5589999999765
Q ss_pred Cc------ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCC-----CCCHHHHHHHHHHHHHHcCCCccccccccCC
Q 000979 683 KQ------ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSP-----EVDSETRKMFIDEVMELVELNPLRQSLVGLP 751 (1202)
Q Consensus 683 ~~------~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~-----~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~ 751 (1202)
.. +.+|+.+||++|++.+.+.+||.+|+..+..-+.+. ....++.+..+-+.++.+|+.+.+-.+.
T Consensus 69 ~~~~~k~lr~~r~~iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~qra--- 145 (258)
T COG3638 69 TKLKGKELRKLRRDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQRA--- 145 (258)
T ss_pred hccchHHHHHHHHhceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHh---
Confidence 32 346789999999999999999999998764322110 1222334455678999999998887764
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCCHHHHHhcceEEEEe
Q 000979 752 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMK 830 (1202)
Q Consensus 752 ~~~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~v~~l~ 830 (1202)
..|||||+|||+|||||+.+|+|+|.|||+++|||.+++.+++.|+++++ +|.|||++.||.+. ..++|||++-|+
T Consensus 146 --~~LSGGQQQRVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vdl-A~~Y~~Riigl~ 222 (258)
T COG3638 146 --STLSGGQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDL-AKKYADRIIGLK 222 (258)
T ss_pred --ccCCcchhHHHHHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechHHH-HHHHHhhheEec
Confidence 46999999999999999999999999999999999999999999999975 59999999999874 789999999998
Q ss_pred cCCEEEEEcCCCccc
Q 000979 831 RGGQEIYVGPLGRHS 845 (1202)
Q Consensus 831 ~gG~~~~~G~~~~~~ 845 (1202)
+ |+++|+||+.+..
T Consensus 223 ~-G~ivfDg~~~el~ 236 (258)
T COG3638 223 A-GRIVFDGPASELT 236 (258)
T ss_pred C-CcEEEeCChhhhh
Confidence 5 8999999997643
|
|
| >PRK13409 putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-43 Score=425.69 Aligned_cols=211 Identities=20% Similarity=0.235 Sum_probs=173.6
Q ss_pred eeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccC
Q 000979 603 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 682 (1202)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 682 (1202)
.++++|+++.|. + ..|+++|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++
T Consensus 340 ~l~~~~ls~~~~-------------~-~~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~--p~~G~I~~~---- 399 (590)
T PRK13409 340 LVEYPDLTKKLG-------------D-FSLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLK--PDEGEVDPE---- 399 (590)
T ss_pred EEEEcceEEEEC-------------C-EEEEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEEe----
Confidence 378899988773 1 14899999999999999999999999999999999876 457999875
Q ss_pred CcccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHH
Q 000979 683 KQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRK 762 (1202)
Q Consensus 683 ~~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrq 762 (1202)
..++|++|+..+.+.+||+|++.+.... ... ...++++++.+++.+..++.+ ..|||||||
T Consensus 400 ------~~i~y~~Q~~~~~~~~tv~e~l~~~~~~-----~~~---~~~~~~~L~~l~l~~~~~~~~-----~~LSGGe~Q 460 (590)
T PRK13409 400 ------LKISYKPQYIKPDYDGTVEDLLRSITDD-----LGS---SYYKSEIIKPLQLERLLDKNV-----KDLSGGELQ 460 (590)
T ss_pred ------eeEEEecccccCCCCCcHHHHHHHHhhh-----cCh---HHHHHHHHHHCCCHHHHhCCc-----ccCCHHHHH
Confidence 1489999998888889999999875311 111 124678999999987777654 579999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhcceEEEEecCCEEEEEcCC
Q 000979 763 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPL 841 (1202)
Q Consensus 763 Rv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G~~ 841 (1202)
||+|||+|+.+|++|+|||||+|||+.++..+.+.|++++++ |.|||++|||+. .+...+||+++|+ |++...|..
T Consensus 461 RvaiAraL~~~p~llLLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivsHD~~-~~~~~aDrvivl~--~~~~~~g~~ 537 (590)
T PRK13409 461 RVAIAACLSRDADLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREATALVVDHDIY-MIDYISDRLMVFE--GEPGKHGHA 537 (590)
T ss_pred HHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEc--Ccceeeeec
Confidence 999999999999999999999999999999999999999764 899999999986 5778899999996 478888875
Q ss_pred Ccc---chhHHHHHhhC
Q 000979 842 GRH---SCHLISYFEAI 855 (1202)
Q Consensus 842 ~~~---~~~~~~~f~~~ 855 (1202)
.+. ...+..+++.+
T Consensus 538 ~~~~~~~~~~~~~l~~~ 554 (590)
T PRK13409 538 SGPMDMREGMNRFLKEL 554 (590)
T ss_pred CCchhHHHHHHHHHHHc
Confidence 432 12345566665
|
|
| >COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-43 Score=397.32 Aligned_cols=215 Identities=30% Similarity=0.438 Sum_probs=190.5
Q ss_pred eeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccC
Q 000979 603 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 682 (1202)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 682 (1202)
.++++|++..|. .++.+|+||||++++||++||+||||||||||+|+|+|... +.+|+|.++|.+.
T Consensus 4 ~i~~~~l~k~~~------------~~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~--p~~G~i~i~G~~~ 69 (293)
T COG1131 4 VIEVRNLTKKYG------------GDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLK--PTSGEILVLGYDV 69 (293)
T ss_pred eeeecceEEEeC------------CCCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcC--CCceEEEEcCEeC
Confidence 356788888773 14679999999999999999999999999999999999887 4689999999886
Q ss_pred Cc--ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHH
Q 000979 683 KQ--ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQ 760 (1202)
Q Consensus 683 ~~--~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGq 760 (1202)
.. ...++.+||++|++.+++.+||+|||.|.+.++.... +..+++++++++.++|.+..++. +++||+||
T Consensus 70 ~~~~~~~~~~igy~~~~~~~~~~lT~~e~l~~~~~l~~~~~---~~~~~~~~~~l~~~~L~~~~~~~-----~~~lS~G~ 141 (293)
T COG1131 70 VKEPAKVRRRIGYVPQEPSLYPELTVRENLEFFARLYGLSK---EEAEERIEELLELFGLEDKANKK-----VRTLSGGM 141 (293)
T ss_pred ccCHHHHHhheEEEccCCCCCccccHHHHHHHHHHHhCCCh---hHHHHHHHHHHHHcCCchhhCcc-----hhhcCHHH
Confidence 54 3567889999999999999999999999998886432 34456789999999999855554 45799999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCC-CEEEEEecCCCHHHHHhcceEEEEecCCEEEEEc
Q 000979 761 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTG-RTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVG 839 (1202)
Q Consensus 761 rqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g-~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G 839 (1202)
|||++||+||+++|++|||||||+||||.++..+++.|++++++| +||+++||+++ ++.+.||++++|++ |++++.|
T Consensus 142 kqrl~ia~aL~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l~-e~~~~~d~v~il~~-G~~~~~g 219 (293)
T COG1131 142 KQRLSIALALLHDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHILE-EAEELCDRVIILND-GKIIAEG 219 (293)
T ss_pred HHHHHHHHHHhcCCCEEEECCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcHH-HHHHhCCEEEEEeC-CEEEEeC
Confidence 999999999999999999999999999999999999999999887 89999999997 68888999999985 8999999
Q ss_pred CC
Q 000979 840 PL 841 (1202)
Q Consensus 840 ~~ 841 (1202)
++
T Consensus 220 ~~ 221 (293)
T COG1131 220 TP 221 (293)
T ss_pred CH
Confidence 76
|
|
| >COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-43 Score=370.41 Aligned_cols=209 Identities=27% Similarity=0.414 Sum_probs=177.5
Q ss_pred eEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCC
Q 000979 604 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 683 (1202)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 683 (1202)
++++||+..|... .....+|++||++|++||++||+|||||||||||++|.|... +.+|.+.++|.++.
T Consensus 2 i~~~~v~k~y~~~---------~~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~--pt~G~v~i~g~d~~ 70 (226)
T COG1136 2 IELKNVSKIYGLG---------GEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDK--PTSGEVLINGKDLT 70 (226)
T ss_pred cEEeeeEEEeccC---------CcceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccC--CCCceEEECCEEcC
Confidence 4578888777532 122679999999999999999999999999999999999877 45899999997764
Q ss_pred c------c-cccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCcccc-ccccCCCCCC
Q 000979 684 Q------E-TFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQ-SLVGLPGVSG 755 (1202)
Q Consensus 684 ~------~-~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~-~~~~~~~~~~ 755 (1202)
. . -.++.+|||+|+..+.|.+||+||+.+...+... ...+++++++++++.+||.+..+ .. +.+
T Consensus 71 ~l~~~~~~~~R~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~~~---~~~~~~~~~~~l~~~lgl~~~~~~~~-----p~e 142 (226)
T COG1136 71 KLSEKELAKLRRKKIGFVFQNFNLLPDLTVLENVELPLLIAGK---SAGRRKRAAEELLEVLGLEDRLLKKK-----PSE 142 (226)
T ss_pred cCCHHHHHHHHHHhEEEECccCCCCCCCCHHHHHHhHHHHcCC---ChhHHHHHHHHHHHhcCChhhhccCC-----chh
Confidence 2 1 2356799999999999999999999987765432 22245667889999999986665 43 458
Q ss_pred CCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhcceEEEEecCCE
Q 000979 756 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQ 834 (1202)
Q Consensus 756 LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~ 834 (1202)
|||||||||||||||+.+|++|+.||||.+||+.+++.|+++|++++++ |+|+|++|||+ ++...|||++.|.+ |+
T Consensus 143 LSGGqqQRVAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~--~lA~~~dr~i~l~d-G~ 219 (226)
T COG1136 143 LSGGQQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDP--ELAKYADRVIELKD-GK 219 (226)
T ss_pred cCHHHHHHHHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCH--HHHHhCCEEEEEeC-Ce
Confidence 9999999999999999999999999999999999999999999999765 99999999997 57899999999986 56
|
|
| >COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-44 Score=379.49 Aligned_cols=228 Identities=26% Similarity=0.379 Sum_probs=194.0
Q ss_pred eeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccC
Q 000979 603 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 682 (1202)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 682 (1202)
.++.+|+++.|+ ++.+|+|+||++++||+++|+||||||||||||+|+|..+ +.+|+|.++|+++
T Consensus 2 ~L~~~~ls~~y~-------------~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~--p~~G~V~l~g~~i 66 (258)
T COG1120 2 MLEVENLSFGYG-------------GKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLK--PKSGEVLLDGKDI 66 (258)
T ss_pred eeEEEEEEEEEC-------------CeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCC--CCCCEEEECCCch
Confidence 378899999984 4679999999999999999999999999999999999876 4589999999987
Q ss_pred Cc---ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCC-CCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCH
Q 000979 683 KQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSP-EVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLST 758 (1202)
Q Consensus 683 ~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~-~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSg 758 (1202)
.. ....+.++||||.+...+.+||+|-+.++..-+... ....++.++.++++++.+|+.+.+++.+ .+|||
T Consensus 67 ~~~~~kelAk~ia~vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~~-----~~LSG 141 (258)
T COG1120 67 ASLSPKELAKKLAYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRPV-----DELSG 141 (258)
T ss_pred hhcCHHHHhhhEEEeccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCcc-----cccCh
Confidence 54 456788999999998888999999998875432111 1112333446899999999999999874 57999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCCHHHHHhcceEEEEecCCEEEE
Q 000979 759 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIY 837 (1202)
Q Consensus 759 GqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~ 837 (1202)
|||||+.|||||+.+|++|+||||||.||...+.+++++++++++ +|+|||+++||++ ....+||++++|+ +|++++
T Consensus 142 GerQrv~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN-~A~ryad~~i~lk-~G~i~a 219 (258)
T COG1120 142 GERQRVLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLN-LAARYADHLILLK-DGKIVA 219 (258)
T ss_pred hHHHHHHHHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEE-CCeEEe
Confidence 999999999999999999999999999999999999999999984 5999999999998 4789999999998 489999
Q ss_pred EcCCCcc--chhHHHHH
Q 000979 838 VGPLGRH--SCHLISYF 852 (1202)
Q Consensus 838 ~G~~~~~--~~~~~~~f 852 (1202)
.|+|.+. .+.+.+.|
T Consensus 220 ~G~p~evlT~e~l~~Vy 236 (258)
T COG1120 220 QGTPEEVLTEENLREVY 236 (258)
T ss_pred ecCcchhcCHHHHHHHh
Confidence 9998753 23344555
|
|
| >TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-42 Score=423.18 Aligned_cols=201 Identities=19% Similarity=0.286 Sum_probs=164.0
Q ss_pred eeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccC
Q 000979 603 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 682 (1202)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 682 (1202)
.++++|+++.|. ++.+|+|+|++|++||+++|+||||||||||+++|+|... +.+|+|.+++ +
T Consensus 322 ~l~~~~l~~~~~-------------~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~--p~~G~i~~~~-~- 384 (552)
T TIGR03719 322 VIEAENLSKGFG-------------DKLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQ--PDSGTIKIGE-T- 384 (552)
T ss_pred EEEEeeEEEEEC-------------CeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC--CCCeEEEECC-c-
Confidence 488999998873 2458999999999999999999999999999999999876 4589999844 2
Q ss_pred CcccccceEEEeecCC-CCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCCCCCCCCHHH
Q 000979 683 KQETFARISGYCEQND-IHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP-LRQSLVGLPGVSGLSTEQ 760 (1202)
Q Consensus 683 ~~~~~~~~~~~v~q~~-~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~-~~~~~~~~~~~~~LSgGq 760 (1202)
..+||++|++ .+++.+||.||+.+...... .... +..++++++.+++.+ ..++. +..|||||
T Consensus 385 ------~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~---~~~~--~~~~~~~l~~~~l~~~~~~~~-----~~~LSgGe 448 (552)
T TIGR03719 385 ------VKLAYVDQSRDALDPNKTVWEEISGGLDIIQ---LGKR--EVPSRAYVGRFNFKGSDQQKK-----VGQLSGGE 448 (552)
T ss_pred ------eEEEEEeCCccccCCCCcHHHHHHhhccccc---cCcc--hHHHHHHHHhCCCChhHhcCc-----hhhCCHHH
Confidence 1589999986 47888999999988642211 1111 123457899999864 34554 35799999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCCEEE-EEc
Q 000979 761 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEI-YVG 839 (1202)
Q Consensus 761 rqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~-~~G 839 (1202)
||||+|||+|+.+|++|||||||+|||+.++..+.+.|+++. | |||++||+++ .+.+.||++++|++||++. +.|
T Consensus 449 ~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~--~-~viivsHd~~-~~~~~~d~i~~l~~~~~~~~~~g 524 (552)
T TIGR03719 449 RNRVHLAKTLKSGGNVLLLDEPTNDLDVETLRALEEALLEFA--G-CAVVISHDRW-FLDRIATHILAFEGDSHVEWFEG 524 (552)
T ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHCC--C-eEEEEeCCHH-HHHHhCCEEEEEECCCeEEEeCC
Confidence 999999999999999999999999999999999999999872 4 8999999986 5778899999998666776 445
Q ss_pred C
Q 000979 840 P 840 (1202)
Q Consensus 840 ~ 840 (1202)
+
T Consensus 525 ~ 525 (552)
T TIGR03719 525 N 525 (552)
T ss_pred C
Confidence 4
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. |
| >COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-44 Score=376.13 Aligned_cols=207 Identities=29% Similarity=0.444 Sum_probs=186.2
Q ss_pred CceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCc---cCCc-ccccceEEEeecCCCCCC
Q 000979 627 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGY---PKKQ-ETFARISGYCEQNDIHSP 702 (1202)
Q Consensus 627 ~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~---~~~~-~~~~~~~~~v~q~~~~~~ 702 (1202)
+...+++|||++|+.||++||+|||||||||||++|+|+.. +..|.|.+||. +.+. ....|.+|||+|+..+|+
T Consensus 13 ~~~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~--p~~G~I~~~~~~l~D~~~~~~~~R~VGfvFQ~YALF~ 90 (345)
T COG1118 13 GAFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLET--PDAGRIRLNGRVLFDVSNLAVRDRKVGFVFQHYALFP 90 (345)
T ss_pred ccccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCC--CCCceEEECCEeccchhccchhhcceeEEEechhhcc
Confidence 34568999999999999999999999999999999999987 55899999999 5444 334578999999999999
Q ss_pred CCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCC
Q 000979 703 FVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEP 782 (1202)
Q Consensus 703 ~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~illlDEP 782 (1202)
+|||.+|+.|+.+.+ ....++.+++.+++++++.++|++..++. +.+|||||||||++||||+.+|++||||||
T Consensus 91 HmtVa~NIAFGl~~~-~~~p~~~~~r~rv~elL~lvqL~~la~ry-----P~QLSGGQrQRVALARALA~eP~vLLLDEP 164 (345)
T COG1118 91 HMTVADNIAFGLKVR-KERPSEAEIRARVEELLRLVQLEGLADRY-----PAQLSGGQRQRVALARALAVEPKVLLLDEP 164 (345)
T ss_pred cchHHhhhhhccccc-ccCCChhhHHHHHHHHHHHhcccchhhcC-----chhcChHHHHHHHHHHHhhcCCCeEeecCC
Confidence 999999999998776 33345667788899999999999998886 468999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhcceEEEEecCCEEEEEcCCCc
Q 000979 783 TSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLGR 843 (1202)
Q Consensus 783 tsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G~~~~ 843 (1202)
+++||..-++.+.+.|+++.++ |.|++++|||+. ++++.+|||++|++ |++...||+++
T Consensus 165 f~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~e-ea~~ladrvvvl~~-G~Ieqvg~p~e 224 (345)
T COG1118 165 FGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQE-EALELADRVVVLNQ-GRIEQVGPPDE 224 (345)
T ss_pred chhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCHH-HHHhhcceEEEecC-CeeeeeCCHHH
Confidence 9999999999999999999866 999999999986 79999999999985 89999999864
|
|
| >COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-44 Score=355.03 Aligned_cols=215 Identities=27% Similarity=0.365 Sum_probs=191.9
Q ss_pred eEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCC
Q 000979 604 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 683 (1202)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 683 (1202)
++..+++.+|+. ..++++||||+++.||+++|+|||||||||+|++|++... |.+|.|.++|.+..
T Consensus 2 l~v~~l~K~y~~------------~v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~--P~~G~v~idg~d~~ 67 (245)
T COG4555 2 LEVTDLTKSYGS------------KVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLI--PDSGKVTIDGVDTV 67 (245)
T ss_pred eeeeehhhhccC------------HHhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhcc--CCCceEEEeecccc
Confidence 456677766642 2347999999999999999999999999999999999887 45899999998754
Q ss_pred c--ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHH
Q 000979 684 Q--ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQR 761 (1202)
Q Consensus 684 ~--~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqr 761 (1202)
. ...++.+|.++.+..++..||++|||.|.+++. +....+.+++++++.+.+++.++.|+.+| ++|.|+|
T Consensus 68 ~~p~~vrr~IGVl~~e~glY~RlT~rEnl~~Fa~L~---~l~~~~~kari~~l~k~l~l~~~~~rRv~-----~~S~G~k 139 (245)
T COG4555 68 RDPSFVRRKIGVLFGERGLYARLTARENLKYFARLN---GLSRKEIKARIAELSKRLQLLEYLDRRVG-----EFSTGMK 139 (245)
T ss_pred cChHHHhhhcceecCCcChhhhhhHHHHHHHHHHHh---hhhhhHHHHHHHHHHHHhChHHHHHHHHh-----hhchhhH
Confidence 3 456889999998889999999999999999876 34456677889999999999999999875 6999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCCEEEEEcCC
Q 000979 762 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPL 841 (1202)
Q Consensus 762 qRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G~~ 841 (1202)
|||+|||||+++|++++|||||||||..+.+.+.+.++++.++|++||++||.++ ++.++|||+++|++ |++++.|.+
T Consensus 140 qkV~iARAlvh~P~i~vlDEP~sGLDi~~~r~~~dfi~q~k~egr~viFSSH~m~-EvealCDrvivlh~-Gevv~~gs~ 217 (245)
T COG4555 140 QKVAIARALVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKNEGRAVIFSSHIMQ-EVEALCDRVIVLHK-GEVVLEGSI 217 (245)
T ss_pred HHHHHHHHHhcCCCeEEEcCCCCCccHHHHHHHHHHHHHhhcCCcEEEEecccHH-HHHHhhheEEEEec-CcEEEcCCH
Confidence 9999999999999999999999999999999999999999888999999999986 78889999999996 899999997
Q ss_pred C
Q 000979 842 G 842 (1202)
Q Consensus 842 ~ 842 (1202)
+
T Consensus 218 ~ 218 (245)
T COG4555 218 E 218 (245)
T ss_pred H
Confidence 4
|
|
| >COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-43 Score=395.01 Aligned_cols=218 Identities=26% Similarity=0.382 Sum_probs=196.0
Q ss_pred ceeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCcc
Q 000979 602 HSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP 681 (1202)
Q Consensus 602 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 681 (1202)
..++++||+.+| ++..+|+|+|++|++||+++|+||||||||||||+|+|... +.+|+|.++|++
T Consensus 4 ~~l~i~~v~k~y-------------g~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~--p~~G~I~l~G~~ 68 (352)
T COG3842 4 PALEIRNVSKSF-------------GDFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQ--PSSGEILLDGED 68 (352)
T ss_pred ceEEEEeeeeec-------------CCeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEE
Confidence 358899999887 35679999999999999999999999999999999999877 558999999999
Q ss_pred CCc-ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHH
Q 000979 682 KKQ-ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQ 760 (1202)
Q Consensus 682 ~~~-~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGq 760 (1202)
+.. ...+|.+|+|+|+..+||+|||+||+.|+.+.+ ....+++.+++++++++.++|.+..++. +.+|||||
T Consensus 69 i~~lpp~kR~ig~VFQ~YALFPHltV~~NVafGLk~~--~~~~~~~i~~rv~e~L~lV~L~~~~~R~-----p~qLSGGQ 141 (352)
T COG3842 69 ITDVPPEKRPIGMVFQSYALFPHMTVEENVAFGLKVR--KKLKKAEIKARVEEALELVGLEGFADRK-----PHQLSGGQ 141 (352)
T ss_pred CCCCChhhcccceeecCcccCCCCcHHHHhhhhhhhc--CCCCHHHHHHHHHHHHHHcCchhhhhhC-----hhhhChHH
Confidence 865 346788999999999999999999999998743 2334566788999999999999988886 46899999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhcceEEEEecCCEEEEEc
Q 000979 761 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVG 839 (1202)
Q Consensus 761 rqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G 839 (1202)
||||+|||||+.+|++||||||.|+||..-+.++...|+++.++ |.|.|++|||.. |.+.+.|||++|++ |++...|
T Consensus 142 qQRVALARAL~~~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDqe-EAl~msDrI~Vm~~-G~I~Q~g 219 (352)
T COG3842 142 QQRVALARALVPEPKVLLLDEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQE-EALAMSDRIAVMND-GRIEQVG 219 (352)
T ss_pred HHHHHHHHHhhcCcchhhhcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCHH-HHhhhccceEEccC-CceeecC
Confidence 99999999999999999999999999999999999999999755 999999999986 78999999999985 8999999
Q ss_pred CCCc
Q 000979 840 PLGR 843 (1202)
Q Consensus 840 ~~~~ 843 (1202)
+|++
T Consensus 220 tP~e 223 (352)
T COG3842 220 TPEE 223 (352)
T ss_pred CHHH
Confidence 9864
|
|
| >COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-43 Score=391.26 Aligned_cols=216 Identities=28% Similarity=0.389 Sum_probs=195.2
Q ss_pred eeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccC
Q 000979 603 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 682 (1202)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 682 (1202)
.++++||+.+|. +..+|+|+|++|++||+++|+||||||||||||+|+|... +.+|+|.++|.++
T Consensus 3 ~i~l~~v~K~yg-------------~~~~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~--~~~G~I~i~g~~v 67 (338)
T COG3839 3 ELELKNVRKSFG-------------SFEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEE--PTSGEILIDGRDV 67 (338)
T ss_pred EEEEeeeEEEcC-------------CceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEEC
Confidence 578899998873 1128999999999999999999999999999999999877 5689999999998
Q ss_pred Cc-ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHH
Q 000979 683 KQ-ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQR 761 (1202)
Q Consensus 683 ~~-~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqr 761 (1202)
+. ...+|.+++|+|+..+||+|||+||+.|+.+.+. ..+++.+++++++.+.+++.+..|+. +++||||||
T Consensus 68 t~l~P~~R~iamVFQ~yALyPhmtV~~Niaf~Lk~~~---~~k~ei~~rV~eva~~L~l~~lL~r~-----P~~LSGGQr 139 (338)
T COG3839 68 TDLPPEKRGIAMVFQNYALYPHMTVYENIAFGLKLRG---VPKAEIDKRVKEVAKLLGLEHLLNRK-----PLQLSGGQR 139 (338)
T ss_pred CCCChhHCCEEEEeCCccccCCCcHHHHhhhhhhhCC---CchHHHHHHHHHHHHHcCChhHHhcC-----cccCChhhH
Confidence 76 4556889999999999999999999999987663 45677788999999999999999987 368999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhcceEEEEecCCEEEEEcC
Q 000979 762 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGP 840 (1202)
Q Consensus 762 qRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G~ 840 (1202)
|||||||||+++|+++|||||.|+||+..+..+...|+++.++ |.|+|.+|||.. |...++||+++|. +|++...|+
T Consensus 140 QRVAlaRAlVr~P~v~L~DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq~-EAmtladri~Vm~-~G~i~Q~g~ 217 (338)
T COG3839 140 QRVALARALVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQV-EAMTLADRIVVMN-DGRIQQVGT 217 (338)
T ss_pred HHHHHHHHHhcCCCEEEecCchhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCHH-HHHhhCCEEEEEe-CCeeeecCC
Confidence 9999999999999999999999999999999999999999765 899999999975 7899999999998 589999999
Q ss_pred CCc
Q 000979 841 LGR 843 (1202)
Q Consensus 841 ~~~ 843 (1202)
|.+
T Consensus 218 p~e 220 (338)
T COG3839 218 PLE 220 (338)
T ss_pred hHH
Confidence 854
|
|
| >COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-43 Score=346.54 Aligned_cols=214 Identities=25% Similarity=0.334 Sum_probs=185.6
Q ss_pred eEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCC
Q 000979 604 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 683 (1202)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 683 (1202)
++|+||+..|+ .+..+|+||||+|++||++-|+||||||||||||+|.+... +..|+|.++|.++.
T Consensus 2 I~f~~V~k~Y~------------~g~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~--pt~G~i~~~~~dl~ 67 (223)
T COG2884 2 IRFENVSKAYP------------GGREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEER--PTRGKILVNGHDLS 67 (223)
T ss_pred eeehhhhhhcC------------CCchhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhc--CCCceEEECCeecc
Confidence 67899998885 23568999999999999999999999999999999999766 56899999999865
Q ss_pred c------ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCC
Q 000979 684 Q------ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLS 757 (1202)
Q Consensus 684 ~------~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LS 757 (1202)
. .-.||++|+|+||..+.+..||+||+.|+.... ..+.++.++++.++++.+||.+..+.. +.+||
T Consensus 68 ~l~~~~iP~LRR~IGvVFQD~rLL~~~tvyeNVA~pL~v~---G~~~~~i~~rV~~~L~~VgL~~k~~~l-----P~~LS 139 (223)
T COG2884 68 RLKGREIPFLRRQIGVVFQDFRLLPDRTVYENVALPLRVI---GKPPREIRRRVSEVLDLVGLKHKARAL-----PSQLS 139 (223)
T ss_pred cccccccchhhheeeeEeeeccccccchHhhhhhhhhhcc---CCCHHHHHHHHHHHHHHhccchhhhcC-----ccccC
Confidence 3 236889999999999999999999999988765 344566778899999999999887765 35799
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCCEEEE
Q 000979 758 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIY 837 (1202)
Q Consensus 758 gGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~ 837 (1202)
|||||||+||||++.+|++|+.||||-+|||..+..+++++.++.+.|.||++.|||.+. +-.+-.|++.|. +|+++.
T Consensus 140 GGEQQRvaIARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~l-v~~~~~rvl~l~-~Grl~~ 217 (223)
T COG2884 140 GGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLEL-VNRMRHRVLALE-DGRLVR 217 (223)
T ss_pred chHHHHHHHHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHHH-HHhccCcEEEEe-CCEEEe
Confidence 999999999999999999999999999999999999999999999999999999999642 344456777776 589987
Q ss_pred EcCC
Q 000979 838 VGPL 841 (1202)
Q Consensus 838 ~G~~ 841 (1202)
+...
T Consensus 218 d~~~ 221 (223)
T COG2884 218 DESR 221 (223)
T ss_pred cccc
Confidence 6543
|
|
| >PRK10636 putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-42 Score=424.43 Aligned_cols=198 Identities=22% Similarity=0.357 Sum_probs=161.9
Q ss_pred eeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccC
Q 000979 603 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 682 (1202)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 682 (1202)
.++++|+++.|. ++.+|+|+||+|++||+++|+|||||||||||++|+|... +.+|+|.+++.
T Consensus 312 ~l~~~~l~~~y~-------------~~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~--p~~G~i~~~~~-- 374 (638)
T PRK10636 312 LLKMEKVSAGYG-------------DRIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELA--PVSGEIGLAKG-- 374 (638)
T ss_pred eEEEEeeEEEeC-------------CeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCCeEEECCC--
Confidence 488999998873 2468999999999999999999999999999999999876 45799988641
Q ss_pred CcccccceEEEeecCC--CCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCCCCCCCCHH
Q 000979 683 KQETFARISGYCEQND--IHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP-LRQSLVGLPGVSGLSTE 759 (1202)
Q Consensus 683 ~~~~~~~~~~~v~q~~--~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~-~~~~~~~~~~~~~LSgG 759 (1202)
..+||++|+. .+.+..|+.+++.- . .. ...+..+.++++.+++.+ ..++.+ +.||||
T Consensus 375 ------~~igy~~Q~~~~~l~~~~~~~~~~~~---~--~~----~~~~~~~~~~L~~~~l~~~~~~~~~-----~~LSgG 434 (638)
T PRK10636 375 ------IKLGYFAQHQLEFLRADESPLQHLAR---L--AP----QELEQKLRDYLGGFGFQGDKVTEET-----RRFSGG 434 (638)
T ss_pred ------EEEEEecCcchhhCCccchHHHHHHH---h--Cc----hhhHHHHHHHHHHcCCChhHhcCch-----hhCCHH
Confidence 2589999974 34556678777531 1 11 112345788999999963 455553 579999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCCEEE-EE
Q 000979 760 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEI-YV 838 (1202)
Q Consensus 760 qrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~-~~ 838 (1202)
|||||+||++|+.+|++|||||||+|||+.++..+.+.|+++ .| |||++|||+. .+...||++++|.+ |+++ |.
T Consensus 435 ekqRl~La~~l~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~--~g-tvi~vSHd~~-~~~~~~d~i~~l~~-G~i~~~~ 509 (638)
T PRK10636 435 EKARLVLALIVWQRPNLLLLDEPTNHLDLDMRQALTEALIDF--EG-ALVVVSHDRH-LLRSTTDDLYLVHD-GKVEPFD 509 (638)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc--CC-eEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEcC
Confidence 999999999999999999999999999999999999999987 34 9999999986 57789999999985 7887 78
Q ss_pred cCCC
Q 000979 839 GPLG 842 (1202)
Q Consensus 839 G~~~ 842 (1202)
|+.+
T Consensus 510 g~~~ 513 (638)
T PRK10636 510 GDLE 513 (638)
T ss_pred CCHH
Confidence 8763
|
|
| >PRK11147 ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-41 Score=419.37 Aligned_cols=202 Identities=23% Similarity=0.325 Sum_probs=162.8
Q ss_pred eeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccC
Q 000979 603 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 682 (1202)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 682 (1202)
-++++|+++.|+ ++++|+|+||+|++||+++|+|||||||||||++|+|... +.+|+|.+ |.+.
T Consensus 319 ~l~~~~l~~~~~-------------~~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~--p~~G~i~~-~~~~ 382 (635)
T PRK11147 319 VFEMENVNYQID-------------GKQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQ--ADSGRIHC-GTKL 382 (635)
T ss_pred eEEEeeeEEEEC-------------CeEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CCCcEEEE-CCCc
Confidence 478999998873 2468999999999999999999999999999999999866 45899988 4321
Q ss_pred CcccccceEEEeecCC-CCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCCCCCCCCHHH
Q 000979 683 KQETFARISGYCEQND-IHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELN-PLRQSLVGLPGVSGLSTEQ 760 (1202)
Q Consensus 683 ~~~~~~~~~~~v~q~~-~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-~~~~~~~~~~~~~~LSgGq 760 (1202)
.+||++|+. .+++.+||.||+.+..... .... ....+.++++.+++. +..++.+ +.|||||
T Consensus 383 -------~i~y~~q~~~~l~~~~tv~e~l~~~~~~~---~~~~--~~~~~~~~l~~~~l~~~~~~~~~-----~~LSgGe 445 (635)
T PRK11147 383 -------EVAYFDQHRAELDPEKTVMDNLAEGKQEV---MVNG--RPRHVLGYLQDFLFHPKRAMTPV-----KALSGGE 445 (635)
T ss_pred -------EEEEEeCcccccCCCCCHHHHHHhhcccc---cccc--hHHHHHHHHHhcCCCHHHHhChh-----hhCCHHH
Confidence 489999975 5788899999998753210 0111 123467888888885 3455543 5799999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCCEEE-EEc
Q 000979 761 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEI-YVG 839 (1202)
Q Consensus 761 rqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~-~~G 839 (1202)
||||+||++|+.+|++|||||||+|||+.++..+.+.|+++ +.|||++|||.. .+...||+++++.++|++. |.|
T Consensus 446 kqRl~la~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vSHd~~-~~~~~~d~i~~l~~~g~i~~~~g 521 (635)
T PRK11147 446 RNRLLLARLFLKPSNLLILDEPTNDLDVETLELLEELLDSY---QGTVLLVSHDRQ-FVDNTVTECWIFEGNGKIGRYVG 521 (635)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhC---CCeEEEEECCHH-HHHHhcCEEEEEeCCCeEEEccC
Confidence 99999999999999999999999999999999999999875 459999999976 5778899999997335665 445
Q ss_pred CC
Q 000979 840 PL 841 (1202)
Q Consensus 840 ~~ 841 (1202)
+-
T Consensus 522 ~y 523 (635)
T PRK11147 522 GY 523 (635)
T ss_pred CH
Confidence 53
|
|
| >PLN03073 ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-41 Score=414.66 Aligned_cols=200 Identities=19% Similarity=0.277 Sum_probs=158.4
Q ss_pred eeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccC
Q 000979 603 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 682 (1202)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 682 (1202)
.++++|+++.|+ +++.+|+|+||++++||+++|+|||||||||||++|+|..+ +.+|+|.+++
T Consensus 508 ~L~~~~ls~~y~------------~~~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~--p~~G~I~~~~--- 570 (718)
T PLN03073 508 IISFSDASFGYP------------GGPLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQ--PSSGTVFRSA--- 570 (718)
T ss_pred eEEEEeeEEEeC------------CCCeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CCCceEEECC---
Confidence 488999999884 12358999999999999999999999999999999999876 4579998865
Q ss_pred CcccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCCCCCCCCHHHH
Q 000979 683 KQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP-LRQSLVGLPGVSGLSTEQR 761 (1202)
Q Consensus 683 ~~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~-~~~~~~~~~~~~~LSgGqr 761 (1202)
+..+||++|+. .+.+++.++.........+ ... ++.++++++.+++.+ ..+.. +..||||||
T Consensus 571 -----~~~igyv~Q~~--~~~l~~~~~~~~~~~~~~~-~~~----~~~i~~~L~~~gl~~~~~~~~-----~~~LSgGqk 633 (718)
T PLN03073 571 -----KVRMAVFSQHH--VDGLDLSSNPLLYMMRCFP-GVP----EQKLRAHLGSFGVTGNLALQP-----MYTLSGGQK 633 (718)
T ss_pred -----ceeEEEEeccc--cccCCcchhHHHHHHHhcC-CCC----HHHHHHHHHHCCCChHHhcCC-----ccccCHHHH
Confidence 23589999975 2445666664332111111 111 234678999999974 44444 357999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCCEEE-EEcC
Q 000979 762 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEI-YVGP 840 (1202)
Q Consensus 762 qRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~-~~G~ 840 (1202)
|||+|||+|+.+|++|+|||||+|||+.++..+.+.|++. .| |||++|||+. .+...||++++|.+ |+++ +.|+
T Consensus 634 qRvaLAraL~~~p~lLLLDEPT~~LD~~s~~~l~~~L~~~--~g-tvIivSHd~~-~i~~~~drv~~l~~-G~i~~~~g~ 708 (718)
T PLN03073 634 SRVAFAKITFKKPHILLLDEPSNHLDLDAVEALIQGLVLF--QG-GVLMVSHDEH-LISGSVDELWVVSE-GKVTPFHGT 708 (718)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc--CC-EEEEEECCHH-HHHHhCCEEEEEEC-CEEEEeCCC
Confidence 9999999999999999999999999999999998888764 34 9999999986 57788999999985 7888 7776
Q ss_pred C
Q 000979 841 L 841 (1202)
Q Consensus 841 ~ 841 (1202)
.
T Consensus 709 ~ 709 (718)
T PLN03073 709 F 709 (718)
T ss_pred H
Confidence 4
|
|
| >COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-42 Score=346.30 Aligned_cols=219 Identities=22% Similarity=0.315 Sum_probs=186.9
Q ss_pred ceeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCC---CCCceEEEEEEEc
Q 000979 602 HSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGR---KTGGYITGNITIS 678 (1202)
Q Consensus 602 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~---~~~~~~~G~i~~~ 678 (1202)
..++.+|+++.|. ++++|+|||+.|++++++|++||||||||||||++... .++-.++|+|.++
T Consensus 6 ~~~~~~~l~~yYg-------------~~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~ 72 (253)
T COG1117 6 PAIEVRDLNLYYG-------------DKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLD 72 (253)
T ss_pred ceeEecceeEEEC-------------chhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEEC
Confidence 3478899998883 46789999999999999999999999999999999874 2334678999999
Q ss_pred CccCCc-----ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCCC
Q 000979 679 GYPKKQ-----ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP-LRQSLVGLPG 752 (1202)
Q Consensus 679 g~~~~~-----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~-~~~~~~~~~~ 752 (1202)
|+++.. ..+|+.+|+|+|.|..|| +|++||+.|+.++....+ ++.++.+++.++...|.+ ..|++...
T Consensus 73 g~ni~~~~~d~~~lRr~vGMVFQkPnPFp-~SIydNVayG~r~~g~~~---~~ldeiVe~sLk~AaLWdEVKDrL~~s-- 146 (253)
T COG1117 73 GKNIYDPKVDVVELRRRVGMVFQKPNPFP-MSIYDNVAYGLRLHGIKD---KELDEIVESSLKKAALWDEVKDRLHKS-- 146 (253)
T ss_pred CeeccCCCCCHHHHHHHheeeccCCCCCC-chHHHHHHHhHHhhccch---HHHHHHHHHHHHHhHhHHHhHHHhhCC--
Confidence 998654 347889999999999999 999999999988764322 556677888888888764 34444332
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecC
Q 000979 753 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 832 (1202)
Q Consensus 753 ~~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~g 832 (1202)
..+|||||+||++|||||+.+|+|||||||||+|||.+...|-+++.+|+ +.-|||++||.+. ...+..|+...+..
T Consensus 147 a~~LSGGQQQRLcIARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk-~~yTIviVTHnmq-QAaRvSD~taFf~~- 223 (253)
T COG1117 147 ALGLSGGQQQRLCIARALAVKPEVLLMDEPTSALDPISTLKIEELITELK-KKYTIVIVTHNMQ-QAARVSDYTAFFYL- 223 (253)
T ss_pred ccCCChhHHHHHHHHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHH-hccEEEEEeCCHH-HHHHHhHhhhhhcc-
Confidence 24699999999999999999999999999999999999999999999996 5789999999986 57889999999985
Q ss_pred CEEEEEcCCC
Q 000979 833 GQEIYVGPLG 842 (1202)
Q Consensus 833 G~~~~~G~~~ 842 (1202)
|+++.+|+.+
T Consensus 224 G~LvE~g~T~ 233 (253)
T COG1117 224 GELVEFGPTD 233 (253)
T ss_pred cEEEEEcCHH
Confidence 8999999973
|
|
| >TIGR01257 rim_protein retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-37 Score=406.50 Aligned_cols=217 Identities=22% Similarity=0.354 Sum_probs=188.5
Q ss_pred CceeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCc
Q 000979 601 PHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGY 680 (1202)
Q Consensus 601 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~ 680 (1202)
...++++|+++.|+. +++.+|+|+|+++++||+++|+||||||||||+++|+|... +.+|+|.++|.
T Consensus 926 ~~~L~I~nLsK~y~~-----------~~k~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~--PtsG~I~i~G~ 992 (2272)
T TIGR01257 926 VPGVCVKNLVKIFEP-----------SGRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLP--PTSGTVLVGGK 992 (2272)
T ss_pred CceEEEEeEEEEecC-----------CCceEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCC--CCceEEEECCE
Confidence 346899999998841 23569999999999999999999999999999999999876 45899999998
Q ss_pred cCCc--ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCH
Q 000979 681 PKKQ--ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLST 758 (1202)
Q Consensus 681 ~~~~--~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSg 758 (1202)
++.. ...++.+|||+|++.+++.+||+||+.|.++++. ...++.+++++++++.+||.+..|+.+ ++|||
T Consensus 993 dI~~~~~~~r~~IG~~pQ~~~L~~~LTV~E~L~f~~~lkg---~~~~~~~~~v~~lL~~vgL~~~~~~~~-----~~LSG 1064 (2272)
T TIGR01257 993 DIETNLDAVRQSLGMCPQHNILFHHLTVAEHILFYAQLKG---RSWEEAQLEMEAMLEDTGLHHKRNEEA-----QDLSG 1064 (2272)
T ss_pred ECcchHHHHhhcEEEEecCCcCCCCCCHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCCchhhcCCh-----hhCCH
Confidence 8643 2346779999999999999999999999876653 223344566899999999998877764 57999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCCEEEEE
Q 000979 759 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYV 838 (1202)
Q Consensus 759 GqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~ 838 (1202)
||||||+||+||+.+|+||+|||||+|||+.+++.+++.|++++ +|+|||++||+++ ++..++||+++|++ |+++..
T Consensus 1065 GqKQRLsLArALi~~PkVLLLDEPTSGLDp~sr~~l~~lL~~l~-~g~TIIltTHdmd-ea~~laDrI~iL~~-GkL~~~ 1141 (2272)
T TIGR01257 1065 GMQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKYR-SGRTIIMSTHHMD-EADLLGDRIAIISQ-GRLYCS 1141 (2272)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHh-CCCEEEEEECCHH-HHHHhCCEEEEEEC-CEEEEe
Confidence 99999999999999999999999999999999999999999984 6999999999986 57789999999985 899999
Q ss_pred cCC
Q 000979 839 GPL 841 (1202)
Q Consensus 839 G~~ 841 (1202)
|++
T Consensus 1142 Gs~ 1144 (2272)
T TIGR01257 1142 GTP 1144 (2272)
T ss_pred cCH
Confidence 986
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. |
| >PRK13537 nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-41 Score=380.75 Aligned_cols=216 Identities=26% Similarity=0.401 Sum_probs=188.8
Q ss_pred ceeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCcc
Q 000979 602 HSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP 681 (1202)
Q Consensus 602 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 681 (1202)
..++++|++++|. ++.+|+||||++++||+++|+||||||||||+++|+|... +.+|+|.++|.+
T Consensus 6 ~~i~i~~l~k~~~-------------~~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~--p~~G~v~i~G~~ 70 (306)
T PRK13537 6 APIDFRNVEKRYG-------------DKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTH--PDAGSISLCGEP 70 (306)
T ss_pred ceEEEEeEEEEEC-------------CeEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEe
Confidence 3588999999883 2468999999999999999999999999999999999876 458999999988
Q ss_pred CCc--ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHH
Q 000979 682 KKQ--ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTE 759 (1202)
Q Consensus 682 ~~~--~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgG 759 (1202)
... ...++.+||++|++.+++.+||+||+.|.+..+. .+..+.+++++++++.+++.+..++.+ +.||||
T Consensus 71 ~~~~~~~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G 142 (306)
T PRK13537 71 VPSRARHARQRVGVVPQFDNLDPDFTVRENLLVFGRYFG---LSAAAARALVPPLLEFAKLENKADAKV-----GELSGG 142 (306)
T ss_pred cccchHHHHhcEEEEeccCcCCCCCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCchHhcCch-----hhCCHH
Confidence 643 2356789999999999999999999998765432 233344556789999999988888764 479999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCCEEEEEc
Q 000979 760 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVG 839 (1202)
Q Consensus 760 qrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G 839 (1202)
||||++||+||+++|++|+|||||+|||+.+++.+++.|++++++|+|||++||+++ ++.+.|||+++|++ |++++.|
T Consensus 143 ~~qrl~la~aL~~~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~till~sH~l~-e~~~~~d~i~il~~-G~i~~~g 220 (306)
T PRK13537 143 MKRRLTLARALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTHFME-EAERLCDRLCVIEE-GRKIAEG 220 (306)
T ss_pred HHHHHHHHHHHhCCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEEC-CEEEEEC
Confidence 999999999999999999999999999999999999999999877999999999986 68889999999985 8999999
Q ss_pred CCC
Q 000979 840 PLG 842 (1202)
Q Consensus 840 ~~~ 842 (1202)
+++
T Consensus 221 ~~~ 223 (306)
T PRK13537 221 APH 223 (306)
T ss_pred CHH
Confidence 863
|
|
| >COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-42 Score=331.35 Aligned_cols=212 Identities=25% Similarity=0.340 Sum_probs=182.5
Q ss_pred eEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCC
Q 000979 604 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 683 (1202)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 683 (1202)
+..++|.|+|..-+ =.++++|++||++||+||||||||||||+|+|... |.+|+|.+||.+..
T Consensus 2 l~L~~V~~~y~~~~---------------~~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~--P~~G~i~i~g~d~t 64 (231)
T COG3840 2 LALDDVRFSYGHLP---------------MRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFET--PASGEILINGVDHT 64 (231)
T ss_pred ccccceEEeeCcce---------------EEEEEeecCCcEEEEECCCCccHHHHHHHHHhccC--CCCceEEEcCeecC
Confidence 34678888885321 25788999999999999999999999999999877 45899999999875
Q ss_pred c-ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHH
Q 000979 684 Q-ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRK 762 (1202)
Q Consensus 684 ~-~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrq 762 (1202)
. ....|-++.++|+.++|.++||.+|+.++..-.+ +.+ ++.+++++.++..+||.++.++.. .+|||||||
T Consensus 65 ~~~P~~RPVSmlFQEnNLFaHLtV~qNigLGl~P~L--kL~-a~~r~~v~~aa~~vGl~~~~~RLP-----~~LSGGqRQ 136 (231)
T COG3840 65 ASPPAERPVSMLFQENNLFAHLTVAQNIGLGLSPGL--KLN-AEQREKVEAAAAQVGLAGFLKRLP-----GELSGGQRQ 136 (231)
T ss_pred cCCcccCChhhhhhccccchhhhhhhhhcccCCccc--ccC-HHHHHHHHHHHHHhChhhHhhhCc-----cccCchHHH
Confidence 4 3456778999999999999999999988753221 222 344567899999999999988874 479999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhcceEEEEecCCEEEEEcCC
Q 000979 763 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPL 841 (1202)
Q Consensus 763 Rv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G~~ 841 (1202)
||++||+|+++-+||+||||+|+|||.-+.++..++.+++++ +.|++++||+|+ ++....|+++++++ |++.+.|+.
T Consensus 137 RvALARclvR~~PilLLDEPFsALdP~LR~eMl~Lv~~l~~E~~~TllmVTH~~~-Da~~ia~~~~fl~~-Gri~~~g~~ 214 (231)
T COG3840 137 RVALARCLVREQPILLLDEPFSALDPALRAEMLALVSQLCDERKMTLLMVTHHPE-DAARIADRVVFLDN-GRIAAQGST 214 (231)
T ss_pred HHHHHHHHhccCCeEEecCchhhcCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHH-HHHHhhhceEEEeC-CEEEeeccH
Confidence 999999999999999999999999999999999999999754 899999999997 78999999999985 899999986
Q ss_pred C
Q 000979 842 G 842 (1202)
Q Consensus 842 ~ 842 (1202)
.
T Consensus 215 ~ 215 (231)
T COG3840 215 Q 215 (231)
T ss_pred H
Confidence 3
|
|
| >TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-40 Score=379.18 Aligned_cols=218 Identities=22% Similarity=0.302 Sum_probs=188.0
Q ss_pred eEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCC
Q 000979 604 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 683 (1202)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 683 (1202)
++++|+++.|+.. .+.+.+|+||||++++||+++|+||||||||||+|+|+|..+ +.+|+|.++|.++.
T Consensus 2 I~~~~lsk~y~~~---------~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~--p~~G~I~i~G~~i~ 70 (343)
T TIGR02314 2 IKLSNITKVFHQG---------TKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLER--PTSGSVIVDGQDLT 70 (343)
T ss_pred EEEEEEEEEECCC---------CcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEECC
Confidence 6789999988421 113469999999999999999999999999999999999876 45899999998764
Q ss_pred cc------cccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCC
Q 000979 684 QE------TFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLS 757 (1202)
Q Consensus 684 ~~------~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LS 757 (1202)
.. ..++.+||++|+..+++.+||+||+.+..... ..+.++.++++.++++.+||.+..|... ++||
T Consensus 71 ~~~~~~l~~~r~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~---~~~~~~~~~~v~e~l~~vgL~~~~~~~~-----~~LS 142 (343)
T TIGR02314 71 TLSNSELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELD---NTPKDEIKRKVTELLALVGLGDKHDSYP-----SNLS 142 (343)
T ss_pred cCCHHHHHHHhcCEEEEECCccccccCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhhCCh-----hhCC
Confidence 31 23668999999999999999999999876533 2344555667899999999998877653 5799
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhcceEEEEecCCEEE
Q 000979 758 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEI 836 (1202)
Q Consensus 758 gGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~ 836 (1202)
|||||||+|||||+.+|++|+||||||+||+.++..+++.|++++++ |.|||++||+++ .+.+.||++++|+ +|+++
T Consensus 143 gGqkQRV~IARAL~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~-~v~~~~d~v~vl~-~G~iv 220 (343)
T TIGR02314 143 GGQKQRVAIARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEMD-VVKRICDCVAVIS-NGELI 220 (343)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEE-CCEEE
Confidence 99999999999999999999999999999999999999999999765 999999999986 5778999999998 58999
Q ss_pred EEcCCC
Q 000979 837 YVGPLG 842 (1202)
Q Consensus 837 ~~G~~~ 842 (1202)
..|++.
T Consensus 221 ~~g~~~ 226 (343)
T TIGR02314 221 EQGTVS 226 (343)
T ss_pred EEcCHH
Confidence 999864
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. |
| >COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-42 Score=339.29 Aligned_cols=207 Identities=26% Similarity=0.361 Sum_probs=184.0
Q ss_pred CceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCCccc----ccceEEEeecCCCCCC
Q 000979 627 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQET----FARISGYCEQNDIHSP 702 (1202)
Q Consensus 627 ~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~----~~~~~~~v~q~~~~~~ 702 (1202)
+++++++|||+++++||+++|+|||||||||.+.++.|... +.+|.|.+||.+++... .|..+||+||++..|.
T Consensus 15 ~kr~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~--~d~G~i~ld~~diT~lPm~~RArlGigYLpQE~SIFr 92 (243)
T COG1137 15 KKRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVR--PDSGKILLDDEDITKLPMHKRARLGIGYLPQEASIFR 92 (243)
T ss_pred CCeeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEe--cCCceEEECCcccccCChHHHhhcCcccccccchHhh
Confidence 45679999999999999999999999999999999999877 45899999999876522 3446899999999999
Q ss_pred CCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCC
Q 000979 703 FVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEP 782 (1202)
Q Consensus 703 ~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~illlDEP 782 (1202)
.+||+||+......+.. +....+++.+.+++++.+++.++++... ..||||||||+.|||||+.+|+.++||||
T Consensus 93 ~LtV~dNi~~vlE~~~~-d~~~~~~~~~l~~LL~ef~i~hlr~~~a-----~sLSGGERRR~EIARaLa~~P~fiLLDEP 166 (243)
T COG1137 93 KLTVEDNIMAVLEIREK-DLKKAERKEELDALLEEFHITHLRDSKA-----YSLSGGERRRVEIARALAANPKFILLDEP 166 (243)
T ss_pred cCcHHHHHHHHHhhhhc-chhHHHHHHHHHHHHHHhchHHHhcCcc-----cccccchHHHHHHHHHHhcCCCEEEecCC
Confidence 99999999887766532 2233466677899999999999999863 36999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCCEEEEEcCCCc
Q 000979 783 TSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLGR 843 (1202)
Q Consensus 783 tsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G~~~~ 843 (1202)
++|.||.+..+|.++++.|++.|..|++|-|+.+ +....|||.+++++ |+++++|++++
T Consensus 167 FAGVDPiaV~dIq~iI~~L~~rgiGvLITDHNVR-EtL~i~dRaYIi~~-G~vla~G~p~e 225 (243)
T COG1137 167 FAGVDPIAVIDIQRIIKHLKDRGIGVLITDHNVR-ETLDICDRAYIISD-GKVLAEGSPEE 225 (243)
T ss_pred ccCCCchhHHHHHHHHHHHHhCCceEEEccccHH-HHHhhhheEEEEec-CeEEecCCHHH
Confidence 9999999999999999999999999999999997 78999999999995 89999999864
|
|
| >PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-40 Score=383.44 Aligned_cols=217 Identities=25% Similarity=0.369 Sum_probs=189.3
Q ss_pred eeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccC
Q 000979 603 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 682 (1202)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 682 (1202)
.++++|+++.|+ +++.+|+|+||++++||+++|+|||||||||||++|+|..+ +.+|+|.++|.++
T Consensus 3 ~l~i~~l~~~~~------------~~~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~--p~~G~I~~~g~~i 68 (356)
T PRK11650 3 GLKLQAVRKSYD------------GKTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLER--ITSGEIWIGGRVV 68 (356)
T ss_pred EEEEEeEEEEeC------------CCCEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCC--CCceEEEECCEEC
Confidence 378899998873 12458999999999999999999999999999999999876 4589999999876
Q ss_pred Cc-ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHH
Q 000979 683 KQ-ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQR 761 (1202)
Q Consensus 683 ~~-~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqr 761 (1202)
.. ...++.+|||+|++.++|++||+||+.|+.+.+ ..+.++.+++++++++.++|.+..++.. ++||||||
T Consensus 69 ~~~~~~~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~LSgGq~ 140 (356)
T PRK11650 69 NELEPADRDIAMVFQNYALYPHMSVRENMAYGLKIR---GMPKAEIEERVAEAARILELEPLLDRKP-----RELSGGQR 140 (356)
T ss_pred CCCCHHHCCEEEEeCCccccCCCCHHHHHHhHHhhc---CCCHHHHHHHHHHHHHHcCChhHhhCCh-----hhCCHHHH
Confidence 43 223578999999999999999999999986533 2344555677899999999998887763 57999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhcceEEEEecCCEEEEEcC
Q 000979 762 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGP 840 (1202)
Q Consensus 762 qRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G~ 840 (1202)
|||+|||||+.+|++|+||||||+||+.++..+.+.|+++.++ |.|+|++|||+. ++.+++|++++|+ +|+++..|+
T Consensus 141 QRvalARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~-ea~~l~D~i~vl~-~G~i~~~g~ 218 (356)
T PRK11650 141 QRVAMGRAIVREPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQV-EAMTLADRVVVMN-GGVAEQIGT 218 (356)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEe-CCEEEEECC
Confidence 9999999999999999999999999999999999999999765 899999999986 6889999999998 589999999
Q ss_pred CCc
Q 000979 841 LGR 843 (1202)
Q Consensus 841 ~~~ 843 (1202)
+++
T Consensus 219 ~~~ 221 (356)
T PRK11650 219 PVE 221 (356)
T ss_pred HHH
Confidence 753
|
|
| >TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-40 Score=381.82 Aligned_cols=215 Identities=25% Similarity=0.359 Sum_probs=189.7
Q ss_pred eeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccC
Q 000979 603 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 682 (1202)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 682 (1202)
.++++|++++|. ++.+|+|+||++++||+++|+|||||||||||++|+|..+ +.+|+|.++|.+.
T Consensus 4 ~l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~--p~~G~I~i~g~~~ 68 (353)
T TIGR03265 4 YLSIDNIRKRFG-------------AFTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLER--QTAGTIYQGGRDI 68 (353)
T ss_pred EEEEEEEEEEeC-------------CeEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCC--CCceEEEECCEEC
Confidence 478999998874 2458999999999999999999999999999999999876 4589999999876
Q ss_pred Cc-ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHH
Q 000979 683 KQ-ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQR 761 (1202)
Q Consensus 683 ~~-~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqr 761 (1202)
.. ...++.+|||+|++.++|.+||+||+.|+...+ ..+.++.+++++++++.++|.+..++. +++||||||
T Consensus 69 ~~~~~~~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~---~~~~~~~~~~~~~~l~~l~L~~~~~~~-----~~~LSgGq~ 140 (353)
T TIGR03265 69 TRLPPQKRDYGIVFQSYALFPNLTVADNIAYGLKNR---GMGRAEVAERVAELLDLVGLPGSERKY-----PGQLSGGQQ 140 (353)
T ss_pred CCCCHHHCCEEEEeCCcccCCCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCCchhhCC-----hhhCCHHHH
Confidence 43 234577999999999999999999999986543 234455667899999999999888876 357999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhcceEEEEecCCEEEEEcC
Q 000979 762 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGP 840 (1202)
Q Consensus 762 qRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G~ 840 (1202)
|||+|||||+.+|++|||||||++||+.++..+.+.|+++.++ |.|+|++||+++ ++..++||+++|++ |+++..|+
T Consensus 141 QRvaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~-ea~~l~d~i~vl~~-G~i~~~g~ 218 (353)
T TIGR03265 141 QRVALARALATSPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQE-EALSMADRIVVMNH-GVIEQVGT 218 (353)
T ss_pred HHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHhCCEEEEEEC-CEEEEEcC
Confidence 9999999999999999999999999999999999999998765 899999999986 68899999999985 89999999
Q ss_pred CC
Q 000979 841 LG 842 (1202)
Q Consensus 841 ~~ 842 (1202)
++
T Consensus 219 ~~ 220 (353)
T TIGR03265 219 PQ 220 (353)
T ss_pred HH
Confidence 75
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely. |
| >PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-40 Score=380.20 Aligned_cols=215 Identities=24% Similarity=0.379 Sum_probs=189.8
Q ss_pred eeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccC
Q 000979 603 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 682 (1202)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 682 (1202)
.++++|+++.|. ++.+|+|+|+++++||+++|+|||||||||||++|+|..+ +.+|+|.++|.++
T Consensus 6 ~l~~~~l~~~~~-------------~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~--p~~G~I~~~g~~i 70 (351)
T PRK11432 6 FVVLKNITKRFG-------------SNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEK--PTEGQIFIDGEDV 70 (351)
T ss_pred EEEEEeEEEEEC-------------CeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCC--CCceEEEECCEEC
Confidence 588999999873 2458999999999999999999999999999999999877 4589999999876
Q ss_pred Ccc-cccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHH
Q 000979 683 KQE-TFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQR 761 (1202)
Q Consensus 683 ~~~-~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqr 761 (1202)
... ..++.+|||+|++.++|++||+||+.|+...+ ..+.++.+++++++++.+++.+..++. ++.||||||
T Consensus 71 ~~~~~~~r~ig~vfQ~~~lfp~~tv~eNi~~~l~~~---~~~~~~~~~~v~~~l~~~gl~~~~~r~-----~~~LSgGq~ 142 (351)
T PRK11432 71 THRSIQQRDICMVFQSYALFPHMSLGENVGYGLKML---GVPKEERKQRVKEALELVDLAGFEDRY-----VDQISGGQQ 142 (351)
T ss_pred CCCCHHHCCEEEEeCCcccCCCCCHHHHHHHHHhHc---CCCHHHHHHHHHHHHHHcCCchhhcCC-----hhhCCHHHH
Confidence 542 23578999999999999999999999987543 234455667889999999999887776 357999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhcceEEEEecCCEEEEEcC
Q 000979 762 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGP 840 (1202)
Q Consensus 762 qRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G~ 840 (1202)
|||+|||||+.+|++|||||||+|||+.++..+.+.|+++.++ |+|+|++|||++ ++.+++||+++|++ |+++..|+
T Consensus 143 QRVaLARaL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~-e~~~laD~i~vm~~-G~i~~~g~ 220 (351)
T PRK11432 143 QRVALARALILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQS-EAFAVSDTVIVMNK-GKIMQIGS 220 (351)
T ss_pred HHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHhCCEEEEEEC-CEEEEEcC
Confidence 9999999999999999999999999999999999999999765 899999999986 68899999999985 89999999
Q ss_pred CC
Q 000979 841 LG 842 (1202)
Q Consensus 841 ~~ 842 (1202)
++
T Consensus 221 ~~ 222 (351)
T PRK11432 221 PQ 222 (351)
T ss_pred HH
Confidence 75
|
|
| >COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-41 Score=344.07 Aligned_cols=218 Identities=26% Similarity=0.318 Sum_probs=182.1
Q ss_pred eeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccC
Q 000979 603 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 682 (1202)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 682 (1202)
.++.+|+++.|+... ...++|+||||++.+||++||+|+||||||||.++|+|... +.+|+|.++|.+.
T Consensus 3 ~l~v~nl~~~y~~~~---------~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~--p~~G~I~~~G~~~ 71 (252)
T COG1124 3 LLSVRNLSIVYGGGK---------FAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEK--PSSGSILLDGKPL 71 (252)
T ss_pred eEEEeceEEEecCCc---------chhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccC--CCCceEEECCccc
Confidence 478899999886321 12268999999999999999999999999999999999877 4589999999775
Q ss_pred Ccc----cccceEEEeecCC--CCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCC
Q 000979 683 KQE----TFARISGYCEQND--IHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGL 756 (1202)
Q Consensus 683 ~~~----~~~~~~~~v~q~~--~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~L 756 (1202)
... .+++.+.+|+||+ .+.|..||++.|.-+... ...++.+ +++.++++.+||.+..-.+ .+.+|
T Consensus 72 ~~~~~~~~~~~~VQmVFQDp~~SLnP~~tv~~~l~Epl~~---~~~~~~~--~~i~~~L~~VgL~~~~l~R----~P~eL 142 (252)
T COG1124 72 APKKRAKAFYRPVQMVFQDPYSSLNPRRTVGRILSEPLRP---HGLSKSQ--QRIAELLDQVGLPPSFLDR----RPHEL 142 (252)
T ss_pred CccccchhhccceeEEecCCccccCcchhHHHHHhhhhcc---CCccHHH--HHHHHHHHHcCCCHHHHhc----Cchhc
Confidence 432 3577899999997 477889999988766543 1233332 3388999999997643222 24689
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhcceEEEEecCCEE
Q 000979 757 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQE 835 (1202)
Q Consensus 757 SgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~ 835 (1202)
|||||||+||||||+.+|++|+||||||+||+..+.+|+++|.+++++ |.|.|+++||.+ -+..+|||+++|++ |++
T Consensus 143 SGGQ~QRiaIARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~-~v~~~cdRi~Vm~~-G~i 220 (252)
T COG1124 143 SGGQRQRIAIARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLA-LVEHMCDRIAVMDN-GQI 220 (252)
T ss_pred ChhHHHHHHHHHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHH-HHHHHhhheeeeeC-CeE
Confidence 999999999999999999999999999999999999999999999765 789999999987 47889999999986 899
Q ss_pred EEEcCCC
Q 000979 836 IYVGPLG 842 (1202)
Q Consensus 836 ~~~G~~~ 842 (1202)
+..++.+
T Consensus 221 vE~~~~~ 227 (252)
T COG1124 221 VEIGPTE 227 (252)
T ss_pred EEeechh
Confidence 9999974
|
|
| >TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-40 Score=380.66 Aligned_cols=216 Identities=24% Similarity=0.328 Sum_probs=189.4
Q ss_pred eeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEE--EEEEEcCc
Q 000979 603 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIT--GNITISGY 680 (1202)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~--G~i~~~g~ 680 (1202)
.++++|++++|. ++.+|+|+|+++++||+++|+|||||||||||++|+|..+ +.+ |+|.++|.
T Consensus 5 ~l~~~~l~~~~~-------------~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~--p~~~~G~i~~~g~ 69 (362)
T TIGR03258 5 GIRIDHLRVAYG-------------ANTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVK--AAGLTGRIAIADR 69 (362)
T ss_pred EEEEEEEEEEEC-------------CeEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCCCEEEEECCE
Confidence 588999999884 2458999999999999999999999999999999999876 447 99999998
Q ss_pred cCCc-ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHH
Q 000979 681 PKKQ-ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTE 759 (1202)
Q Consensus 681 ~~~~-~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgG 759 (1202)
+... ...++.+|||+|++.++|.+||+||+.|+...+ ..+.++.+++++++++.++|.+..++.. ++||||
T Consensus 70 ~~~~~~~~~r~ig~vfQ~~~l~p~~tv~enl~~~l~~~---~~~~~~~~~~v~~~l~~~gL~~~~~~~~-----~~LSgG 141 (362)
T TIGR03258 70 DLTHAPPHKRGLALLFQNYALFPHLKVEDNVAFGLRAQ---KMPKADIAERVADALKLVGLGDAAAHLP-----AQLSGG 141 (362)
T ss_pred ECCCCCHHHCCEEEEECCcccCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHhcCCCchhhCCh-----hhCCHH
Confidence 7643 224567999999999999999999999986543 2344555667899999999998888764 579999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC--CCEEEEEecCCCHHHHHhcceEEEEecCCEEEE
Q 000979 760 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT--GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIY 837 (1202)
Q Consensus 760 qrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~--g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~ 837 (1202)
|||||+|||||+.+|++|||||||+|||+..+..+.+.|+++.++ |.|+|++||+++ ++..++||+++|++ |+++.
T Consensus 142 q~QRvaLARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~-ea~~l~dri~vl~~-G~i~~ 219 (362)
T TIGR03258 142 MQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQD-DALTLADKAGIMKD-GRLAA 219 (362)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEE
Confidence 999999999999999999999999999999999999999999876 799999999986 68899999999985 89999
Q ss_pred EcCCCc
Q 000979 838 VGPLGR 843 (1202)
Q Consensus 838 ~G~~~~ 843 (1202)
.|++++
T Consensus 220 ~g~~~~ 225 (362)
T TIGR03258 220 HGEPQA 225 (362)
T ss_pred EcCHHH
Confidence 999753
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. |
| >PRK13536 nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-40 Score=375.20 Aligned_cols=215 Identities=27% Similarity=0.379 Sum_probs=187.4
Q ss_pred eeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccC
Q 000979 603 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 682 (1202)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 682 (1202)
.++++|++++|. ++.+|+||||+|++||++||+||||||||||+++|+|... +.+|+|.++|.+.
T Consensus 41 ~i~i~nl~k~y~-------------~~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~--p~~G~i~i~G~~~ 105 (340)
T PRK13536 41 AIDLAGVSKSYG-------------DKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTS--PDAGKITVLGVPV 105 (340)
T ss_pred eEEEEEEEEEEC-------------CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCC--CCceEEEECCEEC
Confidence 588999999883 3468999999999999999999999999999999999876 4589999999886
Q ss_pred Cc--ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHH
Q 000979 683 KQ--ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQ 760 (1202)
Q Consensus 683 ~~--~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGq 760 (1202)
.. ...++.+||++|++.+++.+||+||+.+.+..+. ....+.+++++++++.++|.+..++.+ +.|||||
T Consensus 106 ~~~~~~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~ll~~~~L~~~~~~~~-----~~LS~G~ 177 (340)
T PRK13536 106 PARARLARARIGVVPQFDNLDLEFTVRENLLVFGRYFG---MSTREIEAVIPSLLEFARLESKADARV-----SDLSGGM 177 (340)
T ss_pred CcchHHHhccEEEEeCCccCCCCCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCchhhCCCh-----hhCCHHH
Confidence 43 2346789999999999999999999997665432 223334456788999999998877765 4799999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCCEEEEEcC
Q 000979 761 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGP 840 (1202)
Q Consensus 761 rqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G~ 840 (1202)
|||++||+||+++|++|+|||||+|||+.++..+++.|++++++|+|||++||+++ ++.+.||++++|++ |++++.|+
T Consensus 178 kqrv~lA~aL~~~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~~g~tilisSH~l~-e~~~~~d~i~il~~-G~i~~~g~ 255 (340)
T PRK13536 178 KRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFME-EAERLCDRLCVLEA-GRKIAEGR 255 (340)
T ss_pred HHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEEC-CEEEEEcC
Confidence 99999999999999999999999999999999999999999878999999999986 68889999999985 89999998
Q ss_pred CC
Q 000979 841 LG 842 (1202)
Q Consensus 841 ~~ 842 (1202)
++
T Consensus 256 ~~ 257 (340)
T PRK13536 256 PH 257 (340)
T ss_pred HH
Confidence 73
|
|
| >COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-40 Score=354.48 Aligned_cols=215 Identities=23% Similarity=0.326 Sum_probs=189.1
Q ss_pred eeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccC
Q 000979 603 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 682 (1202)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 682 (1202)
.+.++|++|+|+. +..+|+|+|+++++||.++|+||||||||||+++|+|... +.+|.|.++|.+.
T Consensus 3 ~i~~~~l~~~y~~------------~~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~--p~~G~v~~~g~~~ 68 (235)
T COG1122 3 MIEAENLSFRYPG------------RKAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLK--PTSGEVLVDGLDT 68 (235)
T ss_pred eEEEEEEEEEcCC------------CceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCc--CCCCEEEECCeec
Confidence 3678999999852 1568999999999999999999999999999999999877 4579999999885
Q ss_pred C----cccccceEEEeecCCCC-CCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCC
Q 000979 683 K----QETFARISGYCEQNDIH-SPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLS 757 (1202)
Q Consensus 683 ~----~~~~~~~~~~v~q~~~~-~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LS 757 (1202)
. ....++.+|||+|+|.. +..-||.|.+.|+.... ..+.++.+++++++++.+++.+.+++. +..||
T Consensus 69 ~~~~~~~~~~~~vG~VfQnpd~q~~~~tV~~evafg~~n~---g~~~~e~~~rv~~~l~~vgl~~~~~r~-----p~~LS 140 (235)
T COG1122 69 SSEKSLLELRQKVGLVFQNPDDQLFGPTVEDEVAFGLENL---GLPREEIEERVAEALELVGLEELLDRP-----PFNLS 140 (235)
T ss_pred cchhhHHHhhcceEEEEECcccccccCcHHHHHhhchhhc---CCCHHHHHHHHHHHHHHcCchhhccCC-----ccccC
Confidence 4 34578899999999754 44579999999987533 445566788899999999999987775 46799
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhcceEEEEecCCEEE
Q 000979 758 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEI 836 (1202)
Q Consensus 758 gGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~ 836 (1202)
|||||||+||.+|+.+|++|+|||||||||+..++.+++.++++.++ |+|+|++|||.+ .+.+++||+++|++ |+++
T Consensus 141 GGqkqRvaIA~vLa~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~-~~~~~ad~v~vl~~-G~i~ 218 (235)
T COG1122 141 GGQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLE-LVLEYADRVVVLDD-GKIL 218 (235)
T ss_pred CcceeeHHhhHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHH-HHHhhCCEEEEEEC-CEEe
Confidence 99999999999999999999999999999999999999999999877 799999999987 58889999999985 8999
Q ss_pred EEcCC
Q 000979 837 YVGPL 841 (1202)
Q Consensus 837 ~~G~~ 841 (1202)
++|++
T Consensus 219 ~~g~p 223 (235)
T COG1122 219 ADGDP 223 (235)
T ss_pred ecCCH
Confidence 99986
|
|
| >cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-40 Score=359.91 Aligned_cols=214 Identities=24% Similarity=0.355 Sum_probs=181.9
Q ss_pred eEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCC
Q 000979 604 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 683 (1202)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 683 (1202)
++++|+++.|+ ++.+|+|+||++++||+++|+||||||||||+|+|+|..+ +.+|+|.++|.++.
T Consensus 1 l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--p~~G~i~~~g~~~~ 65 (235)
T cd03261 1 IELRGLTKSFG-------------GRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLR--PDSGEVLIDGEDIS 65 (235)
T ss_pred CeEEEEEEEEC-------------CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEcc
Confidence 35788988873 2458999999999999999999999999999999999876 45899999998754
Q ss_pred c------ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCC
Q 000979 684 Q------ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLS 757 (1202)
Q Consensus 684 ~------~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LS 757 (1202)
. ..+++.++|++|++.+++.+||+||+.+...... ..+.++.+++++++++.+++.+..++.+ +.||
T Consensus 66 ~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS 138 (235)
T cd03261 66 GLSEAELYRLRRRMGMLFQSGALFDSLTVFENVAFPLREHT--RLSEEEIREIVLEKLEAVGLRGAEDLYP-----AELS 138 (235)
T ss_pred ccChhhHHHHhcceEEEccCcccCCCCcHHHHHHHHHhhcc--CCCHHHHHHHHHHHHHHcCCchhhcCCh-----hhCC
Confidence 3 1345679999999999999999999988653221 1233444566788999999987766653 5799
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhcceEEEEecCCEEE
Q 000979 758 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEI 836 (1202)
Q Consensus 758 gGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~ 836 (1202)
|||||||+|||||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||+++ ++.+.||++++|++ |+++
T Consensus 139 gG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~-~~~~~~d~v~~l~~-G~i~ 216 (235)
T cd03261 139 GGMKKRVALARALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLD-TAFAIADRIAVLYD-GKIV 216 (235)
T ss_pred HHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHH-HHHHhcCEEEEEEC-CeEE
Confidence 99999999999999999999999999999999999999999999764 899999999986 57788999999985 8999
Q ss_pred EEcCC
Q 000979 837 YVGPL 841 (1202)
Q Consensus 837 ~~G~~ 841 (1202)
+.|++
T Consensus 217 ~~g~~ 221 (235)
T cd03261 217 AEGTP 221 (235)
T ss_pred EecCH
Confidence 99986
|
The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-40 Score=376.54 Aligned_cols=215 Identities=22% Similarity=0.325 Sum_probs=188.7
Q ss_pred eeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccC
Q 000979 603 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 682 (1202)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 682 (1202)
.++++|++++|. ++.+|+|+||++++||+++|+|||||||||||++|+|..+ +.+|+|.++|.++
T Consensus 14 ~L~l~~l~~~~~-------------~~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~--p~~G~I~~~g~~i 78 (375)
T PRK09452 14 LVELRGISKSFD-------------GKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFET--PDSGRIMLDGQDI 78 (375)
T ss_pred eEEEEEEEEEEC-------------CeEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCC--CCceEEEECCEEC
Confidence 488999999873 2458999999999999999999999999999999999876 4589999999876
Q ss_pred Cc-ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHH
Q 000979 683 KQ-ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQR 761 (1202)
Q Consensus 683 ~~-~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqr 761 (1202)
.. ...++.+|||+|++.++|.+||+||+.|+...+ ..+..+.+++++++++.+++.+..++.. .+||||||
T Consensus 79 ~~~~~~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~p-----~~LSgGq~ 150 (375)
T PRK09452 79 THVPAENRHVNTVFQSYALFPHMTVFENVAFGLRMQ---KTPAAEITPRVMEALRMVQLEEFAQRKP-----HQLSGGQQ 150 (375)
T ss_pred CCCCHHHCCEEEEecCcccCCCCCHHHHHHHHHhhc---CCCHHHHHHHHHHHHHHcCCchhhhCCh-----hhCCHHHH
Confidence 43 224577999999999999999999999986533 2334455667899999999998888763 57999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhcceEEEEecCCEEEEEcC
Q 000979 762 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGP 840 (1202)
Q Consensus 762 qRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G~ 840 (1202)
|||+|||||+.+|++|||||||+|||+..+..+.+.|+++.++ |.|+|++||++. ++..++|++++|++ |+++..|+
T Consensus 151 QRVaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~~-ea~~laDri~vl~~-G~i~~~g~ 228 (375)
T PRK09452 151 QRVAIARAVVNKPKVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQE-EALTMSDRIVVMRD-GRIEQDGT 228 (375)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEEcC
Confidence 9999999999999999999999999999999999999999765 999999999986 68899999999985 89999998
Q ss_pred CC
Q 000979 841 LG 842 (1202)
Q Consensus 841 ~~ 842 (1202)
+.
T Consensus 229 ~~ 230 (375)
T PRK09452 229 PR 230 (375)
T ss_pred HH
Confidence 74
|
|
| >PRK10851 sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-40 Score=375.59 Aligned_cols=217 Identities=25% Similarity=0.386 Sum_probs=187.4
Q ss_pred eEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCC
Q 000979 604 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 683 (1202)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 683 (1202)
++++|+++.|. ++.+|+|+||++++||+++|+||||||||||||+|+|..+ +.+|+|.++|.++.
T Consensus 3 L~i~~l~~~~~-------------~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~--p~~G~I~i~g~~i~ 67 (353)
T PRK10851 3 IEIANIKKSFG-------------RTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEH--QTSGHIRFHGTDVS 67 (353)
T ss_pred EEEEEEEEEeC-------------CeEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEECC
Confidence 67899998873 2458999999999999999999999999999999999876 45899999998764
Q ss_pred c-ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCC-CCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHH
Q 000979 684 Q-ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLS-PEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQR 761 (1202)
Q Consensus 684 ~-~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~-~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqr 761 (1202)
. ...++.++||+|++.++|.+||+||+.|+...... ...+.++.+++++++++.++|.+..++. +++||||||
T Consensus 68 ~~~~~~r~i~~v~Q~~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~-----~~~LSgGq~ 142 (353)
T PRK10851 68 RLHARDRKVGFVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRY-----PAQLSGGQK 142 (353)
T ss_pred CCCHHHCCEEEEecCcccCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhCC-----hhhCCHHHH
Confidence 3 22346799999999999999999999997653211 1233445566789999999998877776 357999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhcceEEEEecCCEEEEEcC
Q 000979 762 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGP 840 (1202)
Q Consensus 762 qRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G~ 840 (1202)
|||+|||||+.+|++|+|||||+|||+.++..+.+.|+++.++ |.|+|++||+++ ++.+++||+++|++ |+++..|+
T Consensus 143 QRvalArAL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~~-ea~~~~Dri~vl~~-G~i~~~g~ 220 (353)
T PRK10851 143 QRVALARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQE-EAMEVADRVVVMSQ-GNIEQAGT 220 (353)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEEcC
Confidence 9999999999999999999999999999999999999999766 899999999986 68899999999985 89999998
Q ss_pred CC
Q 000979 841 LG 842 (1202)
Q Consensus 841 ~~ 842 (1202)
++
T Consensus 221 ~~ 222 (353)
T PRK10851 221 PD 222 (353)
T ss_pred HH
Confidence 74
|
|
| >PRK11607 potG putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-39 Score=374.65 Aligned_cols=215 Identities=24% Similarity=0.359 Sum_probs=188.4
Q ss_pred eeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccC
Q 000979 603 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 682 (1202)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 682 (1202)
.++++|+++.+. ++.+|+|+||++++||+++|+|||||||||||++|+|..+ +.+|+|.++|.++
T Consensus 19 ~l~l~~v~~~~~-------------~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~--p~~G~I~i~g~~i 83 (377)
T PRK11607 19 LLEIRNLTKSFD-------------GQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQ--PTAGQIMLDGVDL 83 (377)
T ss_pred eEEEEeEEEEEC-------------CEEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CCceEEEECCEEC
Confidence 488999998873 2458999999999999999999999999999999999876 4589999999876
Q ss_pred Cc-ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHH
Q 000979 683 KQ-ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQR 761 (1202)
Q Consensus 683 ~~-~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqr 761 (1202)
.. ...++.+|||+|++.++|++||.||+.|+.+.+ ..+..+.+++++++++.+++.+..++. +++||||||
T Consensus 84 ~~~~~~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~---~~~~~~~~~~v~~~l~~l~L~~~~~~~-----~~~LSgGq~ 155 (377)
T PRK11607 84 SHVPPYQRPINMMFQSYALFPHMTVEQNIAFGLKQD---KLPKAEIASRVNEMLGLVHMQEFAKRK-----PHQLSGGQR 155 (377)
T ss_pred CCCCHHHCCEEEEeCCCccCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhcCC-----hhhCCHHHH
Confidence 43 234678999999999999999999999986533 234455567789999999999887775 357999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhcceEEEEecCCEEEEEcC
Q 000979 762 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGP 840 (1202)
Q Consensus 762 qRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G~ 840 (1202)
|||+|||||+.+|++|||||||++||+..+..+.+.|+++.++ |.|+|++|||++ ++..++||+++|++ |+++..|+
T Consensus 156 QRVaLARAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~-ea~~laDri~vl~~-G~i~~~g~ 233 (377)
T PRK11607 156 QRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQE-EAMTMAGRIAIMNR-GKFVQIGE 233 (377)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHhCCEEEEEeC-CEEEEEcC
Confidence 9999999999999999999999999999999999999998654 899999999986 68899999999985 89999999
Q ss_pred CC
Q 000979 841 LG 842 (1202)
Q Consensus 841 ~~ 842 (1202)
++
T Consensus 234 ~~ 235 (377)
T PRK11607 234 PE 235 (377)
T ss_pred HH
Confidence 75
|
|
| >cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-39 Score=350.40 Aligned_cols=211 Identities=28% Similarity=0.409 Sum_probs=178.2
Q ss_pred eEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCC
Q 000979 604 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 683 (1202)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 683 (1202)
++++|+++.|+ ++.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.
T Consensus 1 l~~~~l~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--p~~G~i~~~g~~~~ 65 (213)
T cd03259 1 LELKGLSKTYG-------------SVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLER--PDSGEILIDGRDVT 65 (213)
T ss_pred CeeeeeEEEeC-------------CeeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEECCEEcC
Confidence 35788888873 2458999999999999999999999999999999999876 45899999998764
Q ss_pred c-ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHH
Q 000979 684 Q-ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRK 762 (1202)
Q Consensus 684 ~-~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrq 762 (1202)
. ...++.++|++|++.+++.+|++||+.+..... ....+..+++++++++.+++.+..++.+ ..|||||||
T Consensus 66 ~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~q 137 (213)
T cd03259 66 GVPPERRNIGMVFQDYALFPHLTVAENIAFGLKLR---GVPKAEIRARVRELLELVGLEGLLNRYP-----HELSGGQQQ 137 (213)
T ss_pred cCchhhccEEEEcCchhhccCCcHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCChhhhhcCh-----hhCCHHHHH
Confidence 3 223467899999999999999999998865432 1223334456788999999987766653 579999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhcceEEEEecCCEEEEEc
Q 000979 763 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVG 839 (1202)
Q Consensus 763 Rv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G 839 (1202)
|++|||||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||+++ ++.+.||++++|++ |+++..|
T Consensus 138 rl~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~v~~l~~-G~i~~~g 213 (213)
T cd03259 138 RVALARALAREPSLLLLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQE-EALALADRIAVMNE-GRIVQVG 213 (213)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHH-HHHHhcCEEEEEEC-CEEEecC
Confidence 999999999999999999999999999999999999998764 899999999986 57789999999985 7887765
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-39 Score=351.59 Aligned_cols=208 Identities=23% Similarity=0.318 Sum_probs=176.2
Q ss_pred eEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCC
Q 000979 604 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 683 (1202)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 683 (1202)
++++|++++|+. +++.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.
T Consensus 2 l~~~~l~~~~~~-----------~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~ 68 (216)
T TIGR00960 2 IRFEQVSKAYPG-----------GHQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEK--PTRGKIRFNGQDLT 68 (216)
T ss_pred eEEEEEEEEecC-----------CCeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEehh
Confidence 578999998841 12458999999999999999999999999999999999876 45899999998753
Q ss_pred cc------cccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCC
Q 000979 684 QE------TFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLS 757 (1202)
Q Consensus 684 ~~------~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LS 757 (1202)
.. .+++.++|++|++.+++.+||+||+.+....+. ...++.+++++++++.+++.+..++.. ..||
T Consensus 69 ~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS 140 (216)
T TIGR00960 69 RLRGREIPFLRRHIGMVFQDHRLLSDRTVYDNVAFPLRIIG---VPPRDANERVSAALEKVGLEGKAHALP-----MQLS 140 (216)
T ss_pred hcChhHHHHHHHhceEEecCccccccccHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCChhhhhCCh-----hhCC
Confidence 21 245679999999999999999999998754321 223334556889999999987766653 5799
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCCE
Q 000979 758 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQ 834 (1202)
Q Consensus 758 gGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~ 834 (1202)
||||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||+++ .+.+.||++++|++ |+
T Consensus 141 gG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~-~~~~~~d~i~~l~~-G~ 215 (216)
T TIGR00960 141 GGEQQRVAIARAIVHKPPLLLADEPTGNLDPELSRDIMRLFEEFNRRGTTVLVATHDIN-LVETYRHRTLTLSR-GR 215 (216)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEeC-Cc
Confidence 99999999999999999999999999999999999999999999777999999999986 57778999999985 55
|
|
| >COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-39 Score=333.22 Aligned_cols=214 Identities=26% Similarity=0.400 Sum_probs=180.7
Q ss_pred eEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCC
Q 000979 604 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 683 (1202)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 683 (1202)
++++|++..| ++.++|+||||++++||+++|+||||||||||||+|+|..+ +.+|+|.++|.++.
T Consensus 4 L~v~~l~~~Y-------------G~~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~--~~~G~I~~~G~dit 68 (237)
T COG0410 4 LEVENLSAGY-------------GKIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVR--PRSGRIIFDGEDIT 68 (237)
T ss_pred eeEEeEeecc-------------cceeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCeeEEECCeecC
Confidence 6778888766 45789999999999999999999999999999999999876 34899999999876
Q ss_pred c----ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcC-CCccccccccCCCCCCCCH
Q 000979 684 Q----ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVE-LNPLRQSLVGLPGVSGLST 758 (1202)
Q Consensus 684 ~----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~-l~~~~~~~~~~~~~~~LSg 758 (1202)
. ...++.++||||...+||.|||+|||..++..+.. ++..+..++++.+.+- |.+.+++..| .|||
T Consensus 69 ~~p~~~r~r~Gi~~VPegR~iF~~LTVeENL~~g~~~~~~----~~~~~~~~e~v~~lFP~Lker~~~~aG-----~LSG 139 (237)
T COG0410 69 GLPPHERARLGIAYVPEGRRIFPRLTVEENLLLGAYARRD----KEAQERDLEEVYELFPRLKERRNQRAG-----TLSG 139 (237)
T ss_pred CCCHHHHHhCCeEeCcccccchhhCcHHHHHhhhhhcccc----cccccccHHHHHHHChhHHHHhcCccc-----CCCh
Confidence 4 23466799999999999999999999988654422 1111222667777764 5555565543 6999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhcceEEEEecCCEEEE
Q 000979 759 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIY 837 (1202)
Q Consensus 759 GqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~ 837 (1202)
||||-++|||||+.+|++|+|||||.||-|.-.++|.+.+++++++ |.||+++.++.. ...+++||.++|.+ |++++
T Consensus 140 GEQQMLAiaRALm~~PklLLLDEPs~GLaP~iv~~I~~~i~~l~~~~g~tIlLVEQn~~-~Al~iaDr~yvle~-Griv~ 217 (237)
T COG0410 140 GEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIKELRKEGGMTILLVEQNAR-FALEIADRGYVLEN-GRIVL 217 (237)
T ss_pred HHHHHHHHHHHHhcCCCEEEecCCccCcCHHHHHHHHHHHHHHHHcCCcEEEEEeccHH-HHHHhhCEEEEEeC-CEEEE
Confidence 9999999999999999999999999999999999999999999866 789999999876 57889999999985 89999
Q ss_pred EcCCCc
Q 000979 838 VGPLGR 843 (1202)
Q Consensus 838 ~G~~~~ 843 (1202)
.|+.++
T Consensus 218 ~G~~~e 223 (237)
T COG0410 218 SGTAAE 223 (237)
T ss_pred ecCHHH
Confidence 999754
|
|
| >cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-39 Score=349.23 Aligned_cols=216 Identities=25% Similarity=0.366 Sum_probs=181.4
Q ss_pred eEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCC
Q 000979 604 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 683 (1202)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 683 (1202)
++++|+++.|+.. ...+.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+..
T Consensus 1 l~~~~l~~~~~~~---------~~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~ 69 (220)
T cd03293 1 LEVRNVSKTYGGG---------GGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLER--PTSGEVLVDGEPVT 69 (220)
T ss_pred CeEEEEEEEcCCC---------CcceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEECc
Confidence 3578888887410 011468999999999999999999999999999999999876 45899999998764
Q ss_pred cccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHH
Q 000979 684 QETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKR 763 (1202)
Q Consensus 684 ~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqR 763 (1202)
. .++.++|++|++.+++.+|++||+.+....+. ...+...+.++++++.+++.+..++.+ +.||||||||
T Consensus 70 ~--~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qr 139 (220)
T cd03293 70 G--PGPDRGYVFQQDALLPWLTVLDNVALGLELQG---VPKAEARERAEELLELVGLSGFENAYP-----HQLSGGMRQR 139 (220)
T ss_pred c--ccCcEEEEecccccccCCCHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCChhhhhCCc-----ccCCHHHHHH
Confidence 2 45679999999999999999999988754331 223334456789999999987766653 5799999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCCHHHHHhcceEEEEec-CCEEEEEcCC
Q 000979 764 LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKR-GGQEIYVGPL 841 (1202)
Q Consensus 764 v~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~v~~l~~-gG~~~~~G~~ 841 (1202)
++|||||+.+|++|+|||||+|||+.++..+.+.|+++.+ .|+|||++||+++ ++.+.+|++++|++ +|+++..+++
T Consensus 140 l~la~al~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~~~G~i~~~~~~ 218 (220)
T cd03293 140 VALARALAVDPDVLLLDEPFSALDALTREQLQEELLDIWRETGKTVLLVTHDID-EAVFLADRVVVLSARPGRIVAEVEV 218 (220)
T ss_pred HHHHHHHHcCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHH-HHHHhCCEEEEEECCCCEEEEEEEe
Confidence 9999999999999999999999999999999999999865 4899999999986 57789999999985 4899988875
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-39 Score=374.64 Aligned_cols=215 Identities=25% Similarity=0.371 Sum_probs=186.4
Q ss_pred eeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccC
Q 000979 603 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 682 (1202)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 682 (1202)
.++++|++++|. ++.+|+|+||++++||+++|+|||||||||||++|+|..+ +.+|+|.++|.++
T Consensus 3 ~l~i~~l~~~~~-------------~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~--p~~G~I~~~g~~i 67 (369)
T PRK11000 3 SVTLRNVTKAYG-------------DVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLED--ITSGDLFIGEKRM 67 (369)
T ss_pred EEEEEEEEEEeC-------------CeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CCceEEEECCEEC
Confidence 378899998873 2458999999999999999999999999999999999876 4589999999876
Q ss_pred Cc-ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHH
Q 000979 683 KQ-ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQR 761 (1202)
Q Consensus 683 ~~-~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqr 761 (1202)
.. ...++.++||+|++.+++.+||+||+.|+...+ ..+.++.+++++++++.+++.+..++.+ .+||||||
T Consensus 68 ~~~~~~~~~i~~v~Q~~~l~~~~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~lgL~~~~~~~~-----~~LSgGq~ 139 (369)
T PRK11000 68 NDVPPAERGVGMVFQSYALYPHLSVAENMSFGLKLA---GAKKEEINQRVNQVAEVLQLAHLLDRKP-----KALSGGQR 139 (369)
T ss_pred CCCCHhHCCEEEEeCCcccCCCCCHHHHHHhHHhhc---CCCHHHHHHHHHHHHHHcCChhhhcCCh-----hhCCHHHH
Confidence 43 223467999999999999999999999876533 1233445567899999999988777653 57999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhcceEEEEecCCEEEEEcC
Q 000979 762 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGP 840 (1202)
Q Consensus 762 qRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G~ 840 (1202)
|||+|||||+.+|++|||||||+|||+.++..+.+.|+++.++ |.|+|++||+++ ++.+++|++++|++ |+++..|+
T Consensus 140 QRvaLAraL~~~P~lLLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~-~~~~~~d~i~vl~~-G~i~~~g~ 217 (369)
T PRK11000 140 QRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQV-EAMTLADKIVVLDA-GRVAQVGK 217 (369)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEEcC
Confidence 9999999999999999999999999999999999999998765 899999999986 68889999999985 89999998
Q ss_pred CC
Q 000979 841 LG 842 (1202)
Q Consensus 841 ~~ 842 (1202)
++
T Consensus 218 ~~ 219 (369)
T PRK11000 218 PL 219 (369)
T ss_pred HH
Confidence 74
|
|
| >TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-39 Score=366.45 Aligned_cols=214 Identities=27% Similarity=0.379 Sum_probs=184.1
Q ss_pred eeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccC
Q 000979 603 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 682 (1202)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 682 (1202)
.++++|++++|. ++.+|+|+||++++||+++|+||||||||||+++|+|... +.+|+|.++|.+.
T Consensus 4 ~i~~~~l~~~~~-------------~~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~--p~~G~i~~~g~~~ 68 (303)
T TIGR01288 4 AIDLVGVSKSYG-------------DKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMIS--PDRGKITVLGEPV 68 (303)
T ss_pred EEEEEeEEEEeC-------------CeEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEC
Confidence 478899998873 2458999999999999999999999999999999999876 4589999999875
Q ss_pred Cc--ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHH
Q 000979 683 KQ--ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQ 760 (1202)
Q Consensus 683 ~~--~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGq 760 (1202)
.. ...++.+||++|++.+++.+||+||+.+..... ..+..+.+++++++++.+++.+..++.+ +.|||||
T Consensus 69 ~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~ll~~~~l~~~~~~~~-----~~LSgG~ 140 (303)
T TIGR01288 69 PSRARLARVAIGVVPQFDNLDPEFTVRENLLVFGRYF---GMSTREIEAVIPSLLEFARLESKADVRV-----ALLSGGM 140 (303)
T ss_pred cccHHHHhhcEEEEeccccCCcCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCChhHhcCch-----hhCCHHH
Confidence 32 234567999999999999999999998755432 1223333456788999999988777764 5799999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCCEEEEEcC
Q 000979 761 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGP 840 (1202)
Q Consensus 761 rqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G~ 840 (1202)
|||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||+++ ++.+.||++++|++ |++++.|+
T Consensus 141 ~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~til~~sH~~~-~~~~~~d~i~~l~~-G~i~~~g~ 218 (303)
T TIGR01288 141 KRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFME-EAERLCDRLCVLES-GRKIAEGR 218 (303)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEEC-CEEEEEcC
Confidence 99999999999999999999999999999999999999999878999999999986 67889999999985 89999998
Q ss_pred C
Q 000979 841 L 841 (1202)
Q Consensus 841 ~ 841 (1202)
+
T Consensus 219 ~ 219 (303)
T TIGR01288 219 P 219 (303)
T ss_pred H
Confidence 6
|
This model does not recognize the highly divergent NodI from Azorhizobium caulinodans. |
| >COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-40 Score=337.82 Aligned_cols=208 Identities=26% Similarity=0.364 Sum_probs=181.7
Q ss_pred CceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCCcc----cccceEEEeecCCCCCC
Q 000979 627 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQE----TFARISGYCEQNDIHSP 702 (1202)
Q Consensus 627 ~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~----~~~~~~~~v~q~~~~~~ 702 (1202)
+..++++||||++++||+++|+||||||||||+|+|+|..+ |.+|+|.++|.++... ..+..++--+|...+|+
T Consensus 15 GGl~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~--P~~G~v~~~G~~it~l~p~~iar~Gi~RTFQ~~rlF~ 92 (250)
T COG0411 15 GGLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYK--PSSGTVIFRGRDITGLPPHRIARLGIARTFQITRLFP 92 (250)
T ss_pred CCEEEEeceeEEEcCCeEEEEECCCCCCceeeeeeeccccc--CCCceEEECCcccCCCCHHHHHhccceeecccccccC
Confidence 67889999999999999999999999999999999999887 5589999999987642 23456778899999999
Q ss_pred CCCHHHHHHHHHHccC--------CCC-CCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhC
Q 000979 703 FVTIYESLLFSAWLRL--------SPE-VDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVAN 773 (1202)
Q Consensus 703 ~lTv~e~l~~~~~~~~--------~~~-~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~aL~~~ 773 (1202)
.|||.||+..++..+. +.. .+.++..+++.++++.+||.+.+|...| +||+|||||+.|||||+.+
T Consensus 93 ~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~~~A~-----~LsyG~qR~LEIArALa~~ 167 (250)
T COG0411 93 GLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELADRPAG-----NLSYGQQRRLEIARALATQ 167 (250)
T ss_pred CCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhhcchhh-----cCChhHhHHHHHHHHHhcC
Confidence 9999999998765331 111 1234455678899999999999999864 6999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhcceEEEEecCCEEEEEcCCCc
Q 000979 774 PSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLGR 843 (1202)
Q Consensus 774 p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G~~~~ 843 (1202)
|++|+||||.+||.+....++.+.|+++.++ |.||+++.||++ -++.+||||++|+. |+++..|+|++
T Consensus 168 P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~~g~tillIEHdM~-~Vm~l~dri~Vl~~-G~~IAeG~P~e 236 (250)
T COG0411 168 PKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILLIEHDMK-LVMGLADRIVVLNY-GEVIAEGTPEE 236 (250)
T ss_pred CCEEEecCccCCCCHHHHHHHHHHHHHHHhcCCcEEEEEEeccH-HHhhhccEEEeccC-CcCcccCCHHH
Confidence 9999999999999999999999999999874 799999999998 48999999999985 89999999864
|
|
| >cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-39 Score=349.74 Aligned_cols=213 Identities=29% Similarity=0.380 Sum_probs=181.3
Q ss_pred eEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCC
Q 000979 604 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 683 (1202)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 683 (1202)
++++|++++|. ++.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+..
T Consensus 1 i~~~~~~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~~~ 65 (220)
T cd03265 1 IEVENLVKKYG-------------DFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLK--PTSGRATVAGHDVV 65 (220)
T ss_pred CEEEEEEEEEC-------------CEEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEecC
Confidence 35788888773 2458999999999999999999999999999999999876 45899999998653
Q ss_pred c--ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHH
Q 000979 684 Q--ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQR 761 (1202)
Q Consensus 684 ~--~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqr 761 (1202)
. ...++.++|++|++.+++.+||+||+.+....+. ...++.+++++++++.+++.+..++.+ ..||||||
T Consensus 66 ~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~ 137 (220)
T cd03265 66 REPREVRRRIGIVFQDLSVDDELTGWENLYIHARLYG---VPGAERRERIDELLDFVGLLEAADRLV-----KTYSGGMR 137 (220)
T ss_pred cChHHHhhcEEEecCCccccccCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCHHHhhCCh-----hhCCHHHH
Confidence 2 2345678999999999999999999998754331 223334456789999999987766653 57999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhcceEEEEecCCEEEEEcC
Q 000979 762 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGP 840 (1202)
Q Consensus 762 qRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G~ 840 (1202)
||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||+++ ++.+.+|++++|.+ |+++..|+
T Consensus 138 qr~~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~~-~~~~~~d~i~~l~~-G~i~~~~~ 215 (220)
T cd03265 138 RRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYME-EAEQLCDRVAIIDH-GRIIAEGT 215 (220)
T ss_pred HHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEeC-CEEEEeCC
Confidence 9999999999999999999999999999999999999999876 899999999986 57788999999985 89999887
Q ss_pred C
Q 000979 841 L 841 (1202)
Q Consensus 841 ~ 841 (1202)
+
T Consensus 216 ~ 216 (220)
T cd03265 216 P 216 (220)
T ss_pred h
Confidence 5
|
In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-39 Score=370.31 Aligned_cols=205 Identities=25% Similarity=0.302 Sum_probs=179.8
Q ss_pred CceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCCcc---cc----cceEEEeecCCC
Q 000979 627 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQE---TF----ARISGYCEQNDI 699 (1202)
Q Consensus 627 ~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~---~~----~~~~~~v~q~~~ 699 (1202)
+++.+|+|+||+|++||+++|+|||||||||||++|+|..+ +.+|+|.++|.++... .. ++.++||+|++.
T Consensus 4 ~~~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~--p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~ 81 (363)
T TIGR01186 4 GGKKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIE--PTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFA 81 (363)
T ss_pred CCceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCC--CCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCc
Confidence 34668999999999999999999999999999999999877 5689999999886532 22 568999999999
Q ss_pred CCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEE
Q 000979 700 HSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFM 779 (1202)
Q Consensus 700 ~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~illl 779 (1202)
++|.+||+||+.|..... ..+.+++++++.++++.+||.+..++.. +.|||||||||+|||||+.+|+||||
T Consensus 82 l~~~~TV~eNi~~~~~~~---~~~~~~~~~~~~~~l~~vgL~~~~~~~p-----~~LSGGq~QRV~lARAL~~~p~iLLl 153 (363)
T TIGR01186 82 LFPHMTILQNTSLGPELL---GWPEQERKEKALELLKLVGLEEYEHRYP-----DELSGGMQQRVGLARALAAEPDILLM 153 (363)
T ss_pred CCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHhcCCchhhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 999999999999986543 2344556677899999999988777653 57999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhcceEEEEecCCEEEEEcCCCc
Q 000979 780 DEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLGR 843 (1202)
Q Consensus 780 DEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G~~~~ 843 (1202)
||||++||+.++..+++.|+++.++ |+|||++||+++ ++.+.+||+++|. +|+++..|++++
T Consensus 154 DEP~saLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~~-ea~~~~drI~vl~-~G~iv~~g~~~e 216 (363)
T TIGR01186 154 DEAFSALDPLIRDSMQDELKKLQATLQKTIVFITHDLD-EAIRIGDRIVIMK-AGEIVQVGTPDE 216 (363)
T ss_pred eCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEe-CCEEEeeCCHHH
Confidence 9999999999999999999999754 899999999986 5789999999998 589999998753
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact |
| >TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-39 Score=367.76 Aligned_cols=202 Identities=27% Similarity=0.379 Sum_probs=177.0
Q ss_pred ceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCCc--ccccceEEEeecCCCCCCCCC
Q 000979 628 KLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ--ETFARISGYCEQNDIHSPFVT 705 (1202)
Q Consensus 628 ~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~--~~~~~~~~~v~q~~~~~~~lT 705 (1202)
++.+|+|+||++++||+++|+||||||||||+++|+|... +.+|+|.++|.++.. ...++.+||++|++.+++.+|
T Consensus 5 ~~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~t 82 (302)
T TIGR01188 5 DFKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLR--PTSGTARVAGYDVVREPRKVRRSIGIVPQYASVDEDLT 82 (302)
T ss_pred CeeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEcccCHHHHHhhcEEecCCCCCCCCCc
Confidence 3568999999999999999999999999999999999876 458999999987643 234567999999999999999
Q ss_pred HHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCC
Q 000979 706 IYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 785 (1202)
Q Consensus 706 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~illlDEPtsg 785 (1202)
|+||+.+.+.++. ....+.+++++++++.+++.+..++.+ +.||||||||++||+||+.+|++|+|||||+|
T Consensus 83 v~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrv~la~al~~~p~lllLDEPt~g 154 (302)
T TIGR01188 83 GRENLEMMGRLYG---LPKDEAEERAEELLELFELGEAADRPV-----GTYSGGMRRRLDIAASLIHQPDVLFLDEPTTG 154 (302)
T ss_pred HHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCChhHhCCch-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcC
Confidence 9999998765432 223344556889999999988777764 57999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCCEEEEEcCC
Q 000979 786 LDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPL 841 (1202)
Q Consensus 786 LD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G~~ 841 (1202)
||+.++..+++.|++++++|+|||++||+++ ++.+.||++++|++ |++++.|++
T Consensus 155 LD~~~~~~l~~~l~~~~~~g~tvi~~sH~~~-~~~~~~d~v~~l~~-G~i~~~g~~ 208 (302)
T TIGR01188 155 LDPRTRRAIWDYIRALKEEGVTILLTTHYME-EADKLCDRIAIIDH-GRIIAEGTP 208 (302)
T ss_pred CCHHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEEC-CEEEEECCH
Confidence 9999999999999999877999999999986 67889999999985 899999986
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc. |
| >COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-39 Score=331.32 Aligned_cols=213 Identities=24% Similarity=0.391 Sum_probs=192.6
Q ss_pred eEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCC
Q 000979 604 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 683 (1202)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 683 (1202)
+++++|+.++ +++.+++|+||+++||++++++|||||||||++++|.|... +.+|.|.++|.+.+
T Consensus 3 L~ie~vtK~F-------------g~k~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle--~~~G~I~~~g~~~~ 67 (300)
T COG4152 3 LEIEGVTKSF-------------GDKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLE--PTEGEITWNGGPLS 67 (300)
T ss_pred eEEecchhcc-------------CceeeecceeeeecCCeEEEeecCCCCCccchHHHHhccCC--ccCceEEEcCcchh
Confidence 5677777554 56789999999999999999999999999999999999887 56899999999876
Q ss_pred cccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHH
Q 000979 684 QETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKR 763 (1202)
Q Consensus 684 ~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqR 763 (1202)
.. .+..|||.|.+..++|.+||.|.|.|.|.++ .++.++.++.++.+++.+++.+....++ ++||.|++|+
T Consensus 68 ~~-~~~rIGyLPEERGLy~k~tv~dql~yla~Lk---Gm~~~e~~~~~~~wLer~~i~~~~~~kI-----k~LSKGnqQK 138 (300)
T COG4152 68 QE-IKNRIGYLPEERGLYPKMTVEDQLKYLAELK---GMPKAEIQKKLQAWLERLEIVGKKTKKI-----KELSKGNQQK 138 (300)
T ss_pred hh-hhhhcccChhhhccCccCcHHHHHHHHHHhc---CCcHHHHHHHHHHHHHhccccccccchH-----HHhhhhhhHH
Confidence 43 4567899999999999999999999999887 4556777788999999999998877764 6899999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCCEEEEEcCCC
Q 000979 764 LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLG 842 (1202)
Q Consensus 764 v~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G~~~ 842 (1202)
+.+-.+++++|++++||||+|||||.+.+.+.+.+.+++++|.|||+++|+++ .+.++||++++|++ |+.|.+|+..
T Consensus 139 IQfisaviHePeLlILDEPFSGLDPVN~elLk~~I~~lk~~GatIifSsH~Me-~vEeLCD~llmL~k-G~~V~~G~v~ 215 (300)
T COG4152 139 IQFISAVIHEPELLILDEPFSGLDPVNVELLKDAIFELKEEGATIIFSSHRME-HVEELCDRLLMLKK-GQTVLYGTVE 215 (300)
T ss_pred HHHHHHHhcCCCEEEecCCccCCChhhHHHHHHHHHHHHhcCCEEEEecchHH-HHHHHhhhhheecC-CceEEeccHH
Confidence 99999999999999999999999999999999999999999999999999997 68999999999985 8999999973
|
|
| >cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-39 Score=346.40 Aligned_cols=211 Identities=26% Similarity=0.395 Sum_probs=178.7
Q ss_pred eEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCC
Q 000979 604 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 683 (1202)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 683 (1202)
++++|++++|+ ++.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.
T Consensus 1 i~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~v~~~g~~~~ 65 (213)
T cd03301 1 VELENVTKRFG-------------NVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEE--PTSGRIYIGGRDVT 65 (213)
T ss_pred CEEEeeEEEEC-------------CeeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEECC
Confidence 35788888874 2358999999999999999999999999999999999876 45899999998764
Q ss_pred cc-cccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHH
Q 000979 684 QE-TFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRK 762 (1202)
Q Consensus 684 ~~-~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrq 762 (1202)
.. ..++.++|++|++.+++.+|++||+.+..... ....++.+++++++++.+++.+..+..+ +.|||||||
T Consensus 66 ~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~q 137 (213)
T cd03301 66 DLPPKDRDIAMVFQNYALYPHMTVYDNIAFGLKLR---KVPKDEIDERVREVAELLQIEHLLDRKP-----KQLSGGQRQ 137 (213)
T ss_pred cCCcccceEEEEecChhhccCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCHHHHhCCh-----hhCCHHHHH
Confidence 31 23457999999999988999999998865432 1233344556788999999987766653 579999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhcceEEEEecCCEEEEEc
Q 000979 763 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVG 839 (1202)
Q Consensus 763 Rv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G 839 (1202)
|++|||||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||+++ ++.+.+|++++|.+ |++++.|
T Consensus 138 r~~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~~-~~~~~~d~i~~l~~-g~~~~~g 213 (213)
T cd03301 138 RVALGRAIVREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQV-EAMTMADRIAVMND-GQIQQIG 213 (213)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCeEEEEEC-CEEEecC
Confidence 999999999999999999999999999999999999999764 899999999986 57788999999985 7998876
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. |
| >cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-39 Score=345.95 Aligned_cols=210 Identities=25% Similarity=0.422 Sum_probs=178.6
Q ss_pred eEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCC
Q 000979 604 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 683 (1202)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 683 (1202)
++++|+++.|+ ++.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.
T Consensus 1 l~~~~l~~~~~-------------~~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~ 65 (210)
T cd03269 1 LEVENVTKRFG-------------RVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIIL--PDSGEVLFDGKPLD 65 (210)
T ss_pred CEEEEEEEEEC-------------CEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCCchh
Confidence 35788888773 2458999999999999999999999999999999999876 45899999998764
Q ss_pred cccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHH
Q 000979 684 QETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKR 763 (1202)
Q Consensus 684 ~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqR 763 (1202)
. ..++.++|++|++.+++.+|++||+.+....+. ....+.++.++++++.+++.+..++. ++.||||||||
T Consensus 66 ~-~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qr 136 (210)
T cd03269 66 I-AARNRIGYLPEERGLYPKMKVIDQLVYLAQLKG---LKKEEARRRIDEWLERLELSEYANKR-----VEELSKGNQQK 136 (210)
T ss_pred H-HHHccEEEeccCCcCCcCCcHHHHHHHHHHHcC---CChHHHHHHHHHHHHHcCChHHHhCc-----HhhCCHHHHHH
Confidence 3 345679999999999999999999988654432 22333445678999999998766664 35799999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCCEEEEEc
Q 000979 764 LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVG 839 (1202)
Q Consensus 764 v~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G 839 (1202)
++||++|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||++. ++.+.+|++++|.+ |++++.|
T Consensus 137 l~la~al~~~p~~lllDEP~~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l~~-g~i~~~~ 210 (210)
T cd03269 137 VQFIAAVIHDPELLILDEPFSGLDPVNVELLKDVIRELARAGKTVILSTHQME-LVEELCDRVLLLNK-GRAVLYG 210 (210)
T ss_pred HHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHH-HHHHhhhEEEEEeC-CEEEecC
Confidence 99999999999999999999999999999999999998777899999999986 57788999999985 7887754
|
In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-39 Score=368.57 Aligned_cols=218 Identities=22% Similarity=0.298 Sum_probs=185.7
Q ss_pred eEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCC
Q 000979 604 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 683 (1202)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 683 (1202)
++++|++++|+.. ..++.+|+|+||++++||+++|+||||||||||+|+|+|..+ +.+|+|.++|.++.
T Consensus 2 i~i~~l~~~y~~~---------~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~--p~~G~I~~~g~~i~ 70 (343)
T PRK11153 2 IELKNISKVFPQG---------GRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLER--PTSGRVLVDGQDLT 70 (343)
T ss_pred EEEEeEEEEeCCC---------CCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CCceEEEECCEECC
Confidence 6789999988410 113569999999999999999999999999999999999876 45899999998764
Q ss_pred cc------cccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCC
Q 000979 684 QE------TFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLS 757 (1202)
Q Consensus 684 ~~------~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LS 757 (1202)
.. ..++.++|++|++.+++.+||+||+.+..... ..+.++.+++++++++.+|+.+..++.+ +.||
T Consensus 71 ~~~~~~~~~~~~~ig~v~q~~~l~~~~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~LS 142 (343)
T PRK11153 71 ALSEKELRKARRQIGMIFQHFNLLSSRTVFDNVALPLELA---GTPKAEIKARVTELLELVGLSDKADRYP-----AQLS 142 (343)
T ss_pred cCCHHHHHHHhcCEEEEeCCCccCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhhCCh-----hhCC
Confidence 31 23567999999999999999999999876543 1233444567889999999987777653 5799
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhcceEEEEecCCEEE
Q 000979 758 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEI 836 (1202)
Q Consensus 758 gGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~ 836 (1202)
||||||++|||||+.+|++|||||||+|||+.++..+++.|++++++ |+|||++||+++ ++.++||++++|++ |+++
T Consensus 143 gGq~qRv~lAraL~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~-~i~~~~d~v~~l~~-G~i~ 220 (343)
T PRK11153 143 GGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMD-VVKRICDRVAVIDA-GRLV 220 (343)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEE
Confidence 99999999999999999999999999999999999999999999765 899999999986 57788999999985 8999
Q ss_pred EEcCCC
Q 000979 837 YVGPLG 842 (1202)
Q Consensus 837 ~~G~~~ 842 (1202)
+.|+++
T Consensus 221 ~~g~~~ 226 (343)
T PRK11153 221 EQGTVS 226 (343)
T ss_pred EEcCHH
Confidence 999864
|
|
| >cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-39 Score=352.59 Aligned_cols=216 Identities=26% Similarity=0.359 Sum_probs=180.9
Q ss_pred eEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCC
Q 000979 604 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 683 (1202)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 683 (1202)
++++|+++.|+ ++.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+..
T Consensus 1 l~~~~l~~~~~-------------~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~ 65 (236)
T cd03219 1 LEVRGLTKRFG-------------GLVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLR--PTSGSVLFDGEDIT 65 (236)
T ss_pred CeeeeeEEEEC-------------CEEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCC--CCCceEEECCEECC
Confidence 35788888773 2458999999999999999999999999999999999876 45899999998764
Q ss_pred cc---c-ccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCC-------CCHHHHHHHHHHHHHHcCCCccccccccCCC
Q 000979 684 QE---T-FARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPE-------VDSETRKMFIDEVMELVELNPLRQSLVGLPG 752 (1202)
Q Consensus 684 ~~---~-~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~-------~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~ 752 (1202)
.. . .++.++|++|++.+++.+||+||+.+......... ...++.++.++++++.+++.+..++.
T Consensus 66 ~~~~~~~~~~~i~~v~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~----- 140 (236)
T cd03219 66 GLPPHEIARLGIGRTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLADLADRP----- 140 (236)
T ss_pred CCCHHHHHhcCEEEEecccccccCCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCccchhhCC-----
Confidence 31 1 23568999999999999999999988754321110 01233445678999999998766665
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecC
Q 000979 753 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 832 (1202)
Q Consensus 753 ~~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~g 832 (1202)
++.||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||+++ ++.+.||++++|++
T Consensus 141 ~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~-~~~~~~d~i~~l~~- 218 (236)
T cd03219 141 AGELSYGQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMD-VVMSLADRVTVLDQ- 218 (236)
T ss_pred hhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhCCEEEEEeC-
Confidence 3579999999999999999999999999999999999999999999998777999999999986 57788999999985
Q ss_pred CEEEEEcCC
Q 000979 833 GQEIYVGPL 841 (1202)
Q Consensus 833 G~~~~~G~~ 841 (1202)
|+++..|++
T Consensus 219 G~i~~~~~~ 227 (236)
T cd03219 219 GRVIAEGTP 227 (236)
T ss_pred CEEEeecCH
Confidence 899999876
|
MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). |
| >cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-39 Score=351.94 Aligned_cols=218 Identities=27% Similarity=0.392 Sum_probs=182.4
Q ss_pred eeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccC
Q 000979 603 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 682 (1202)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 682 (1202)
.++++|+++.|+ ++.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+.
T Consensus 2 ~l~~~~l~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~ 66 (239)
T cd03296 2 SIEVRNVSKRFG-------------DFVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLER--PDSGTILFGGEDA 66 (239)
T ss_pred EEEEEeEEEEEC-------------CEEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEC
Confidence 377899999884 2458999999999999999999999999999999999876 4589999999876
Q ss_pred Ccc-cccceEEEeecCCCCCCCCCHHHHHHHHHHccCC-CCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHH
Q 000979 683 KQE-TFARISGYCEQNDIHSPFVTIYESLLFSAWLRLS-PEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQ 760 (1202)
Q Consensus 683 ~~~-~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~-~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGq 760 (1202)
... ..++.++|++|++.+++.+||+||+.+....+.. ......+.++.++++++.+++.+..++.+ ..|||||
T Consensus 67 ~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~ 141 (239)
T cd03296 67 TDVPVQERNVGFVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRYP-----AQLSGGQ 141 (239)
T ss_pred CcCCccccceEEEecCCcccCCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhhhcCh-----hhCCHHH
Confidence 432 2245789999999999899999999886543211 00122333456788999999987666653 5799999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhcceEEEEecCCEEEEEc
Q 000979 761 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVG 839 (1202)
Q Consensus 761 rqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G 839 (1202)
|||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||+++ ++.+.+|++++|++ |+++..|
T Consensus 142 ~qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~-~~~~~~d~i~~l~~-G~i~~~~ 219 (239)
T cd03296 142 RQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQE-EALEVADRVVVMNK-GRIEQVG 219 (239)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CeEEEec
Confidence 99999999999999999999999999999999999999999765 899999999986 57788999999984 8999999
Q ss_pred CCC
Q 000979 840 PLG 842 (1202)
Q Consensus 840 ~~~ 842 (1202)
+++
T Consensus 220 ~~~ 222 (239)
T cd03296 220 TPD 222 (239)
T ss_pred CHH
Confidence 863
|
Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-38 Score=388.60 Aligned_cols=219 Identities=29% Similarity=0.443 Sum_probs=182.8
Q ss_pred ccCCCCceeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEE
Q 000979 596 VLPFEPHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNI 675 (1202)
Q Consensus 596 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i 675 (1202)
..+...+.++++||+|.|.. .+..+|+|+|++|+|||.+||+|+||||||||+|+|+|... |.+|+|
T Consensus 464 ~~~~~~g~I~~~nvsf~y~~-----------~~~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~--p~~G~I 530 (709)
T COG2274 464 HLPKLQGEIEFENVSFRYGP-----------DDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYK--PQQGRI 530 (709)
T ss_pred cccccCceEEEEEEEEEeCC-----------CCcchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCceE
Confidence 34455678999999999963 22358999999999999999999999999999999999987 568999
Q ss_pred EEcCccCCc---ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHc-------CCCcccc
Q 000979 676 TISGYPKKQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELV-------ELNPLRQ 745 (1202)
Q Consensus 676 ~~~g~~~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l-------~l~~~~~ 745 (1202)
.+||.+.+. ..+|+.+|||+||+.++. -|++||+.++. +..+.++. .++++.. .+..-.|
T Consensus 531 ~~dg~dl~~i~~~~lR~~ig~V~Q~~~Lf~-gSI~eNi~l~~-----p~~~~e~i----~~A~~~ag~~~fI~~lP~gy~ 600 (709)
T COG2274 531 LLDGVDLNDIDLASLRRQVGYVLQDPFLFS-GSIRENIALGN-----PEATDEEI----IEAAQLAGAHEFIENLPMGYD 600 (709)
T ss_pred EECCEeHHhcCHHHHHhheeEEcccchhhc-CcHHHHHhcCC-----CCCCHHHH----HHHHHHhCcHHHHHhcccccc
Confidence 999998654 568899999999998875 79999998753 23333322 2222222 3444567
Q ss_pred ccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcce
Q 000979 746 SLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDE 825 (1202)
Q Consensus 746 ~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~ 825 (1202)
+.+|..| .+||||||||++|||||+++|+||+||||||+||+.+++.|.+.|+++. +|+|+|+++|+++ ..+.+||
T Consensus 601 t~v~E~G-~~LSGGQrQrlalARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~-~~~T~I~IaHRl~--ti~~adr 676 (709)
T COG2274 601 TPVGEGG-ANLSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQNLLQIL-QGRTVIIIAHRLS--TIRSADR 676 (709)
T ss_pred cccccCC-CCCCHHHHHHHHHHHHhccCCCEEEEeCcccccCHhHHHHHHHHHHHHh-cCCeEEEEEccch--HhhhccE
Confidence 7787655 5799999999999999999999999999999999999999999999974 5899999999985 6899999
Q ss_pred EEEEecCCEEEEEcCCC
Q 000979 826 LFLMKRGGQEIYVGPLG 842 (1202)
Q Consensus 826 v~~l~~gG~~~~~G~~~ 842 (1202)
+++|+ +|+++..|+.+
T Consensus 677 IiVl~-~Gkiv~~gs~~ 692 (709)
T COG2274 677 IIVLD-QGKIVEQGSHE 692 (709)
T ss_pred EEEcc-CCceeccCCHH
Confidence 99998 58999999964
|
|
| >PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-39 Score=372.14 Aligned_cols=219 Identities=26% Similarity=0.360 Sum_probs=186.3
Q ss_pred eeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccC
Q 000979 603 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 682 (1202)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 682 (1202)
.++++|+++.|+ ++.+|+|+||++++||+++|+||||||||||||+|+|..+ +.+|+|.++|.++
T Consensus 3 ~L~~~nls~~y~-------------~~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~--p~sG~I~l~G~~i 67 (402)
T PRK09536 3 MIDVSDLSVEFG-------------DTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLT--PTAGTVLVAGDDV 67 (402)
T ss_pred eEEEeeEEEEEC-------------CEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCC--CCCcEEEECCEEc
Confidence 378899999883 3568999999999999999999999999999999999876 4589999999876
Q ss_pred Cc---ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCC-CCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCH
Q 000979 683 KQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSP-EVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLST 758 (1202)
Q Consensus 683 ~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~-~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSg 758 (1202)
.. ...++.+|||+|++.+++.+||+||+.++....... ....++.+++++++++.+++.+..++.+ ++|||
T Consensus 68 ~~~~~~~~~~~ig~v~q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~~~-----~~LSg 142 (402)
T PRK09536 68 EALSARAASRRVASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRPV-----TSLSG 142 (402)
T ss_pred CcCCHHHHhcceEEEccCCCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcCCh-----hhCCH
Confidence 43 345678999999999989999999998864221100 0012233456899999999988877763 57999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCCEEEEE
Q 000979 759 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYV 838 (1202)
Q Consensus 759 GqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~ 838 (1202)
|||||++|||||+++|++|+|||||+|||+.++..+++.|++++++|+|||+++|+++ ++.+.|||+++|++ |++++.
T Consensus 143 GerQRv~IArAL~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~~g~TIIivsHdl~-~~~~~adrii~l~~-G~iv~~ 220 (402)
T PRK09536 143 GERQRVLLARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVDDGKTAVAAIHDLD-LAARYCDELVLLAD-GRVRAA 220 (402)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhCCEEEEEEC-CEEEEe
Confidence 9999999999999999999999999999999999999999999877999999999987 57899999999985 899999
Q ss_pred cCCCc
Q 000979 839 GPLGR 843 (1202)
Q Consensus 839 G~~~~ 843 (1202)
|++++
T Consensus 221 G~~~e 225 (402)
T PRK09536 221 GPPAD 225 (402)
T ss_pred cCHHH
Confidence 99753
|
|
| >cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-39 Score=350.63 Aligned_cols=214 Identities=26% Similarity=0.362 Sum_probs=181.2
Q ss_pred eEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCC
Q 000979 604 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 683 (1202)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 683 (1202)
++++|+++.|+ ++.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+..
T Consensus 1 l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~ 65 (232)
T cd03218 1 LRAENLSKRYG-------------KRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVK--PDSGKILLDGQDIT 65 (232)
T ss_pred CeEEEEEEEeC-------------CEEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEecc
Confidence 35788888873 2458999999999999999999999999999999999876 45899999998754
Q ss_pred cc---c-ccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHH
Q 000979 684 QE---T-FARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTE 759 (1202)
Q Consensus 684 ~~---~-~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgG 759 (1202)
.. . .++.++|++|++.+++.+||+||+.+....+. ...++.++.++++++.+++.+..++. ++.||||
T Consensus 66 ~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G 137 (232)
T cd03218 66 KLPMHKRARLGIGYLPQEASIFRKLTVEENILAVLEIRG---LSKKEREEKLEELLEEFHITHLRKSK-----ASSLSGG 137 (232)
T ss_pred cCCHhHHHhccEEEecCCccccccCcHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCChhhhhCC-----hhhCCHH
Confidence 21 1 23568999999999999999999988653321 22333445678999999998776665 3579999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCCEEEEEc
Q 000979 760 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVG 839 (1202)
Q Consensus 760 qrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G 839 (1202)
||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||+++ ++.+.+|++++|++ |+++..|
T Consensus 138 ~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l~~-G~i~~~~ 215 (232)
T cd03218 138 ERRRVEIARALATNPKFLLLDEPFAGVDPIAVQDIQKIIKILKDRGIGVLITDHNVR-ETLSITDRAYIIYE-GKVLAEG 215 (232)
T ss_pred HHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CeEEEEe
Confidence 999999999999999999999999999999999999999999877999999999986 68899999999984 8999998
Q ss_pred CCC
Q 000979 840 PLG 842 (1202)
Q Consensus 840 ~~~ 842 (1202)
+.+
T Consensus 216 ~~~ 218 (232)
T cd03218 216 TPE 218 (232)
T ss_pred CHH
Confidence 864
|
The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. |
| >TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-39 Score=362.49 Aligned_cols=213 Identities=23% Similarity=0.362 Sum_probs=184.9
Q ss_pred eEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCC
Q 000979 604 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 683 (1202)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 683 (1202)
++++|++++|. ++.+|+|+||++++||+++|+||||||||||+++|+|... +.+|+|.++|.+..
T Consensus 3 l~~~~l~~~~~-------------~~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~--~~~G~i~i~g~~~~ 67 (301)
T TIGR03522 3 IRVSSLTKLYG-------------TQNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLP--PDSGSVQVCGEDVL 67 (301)
T ss_pred EEEEEEEEEEC-------------CEEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEcc
Confidence 67899998873 2468999999999999999999999999999999999876 45899999998764
Q ss_pred c--ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHH
Q 000979 684 Q--ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQR 761 (1202)
Q Consensus 684 ~--~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqr 761 (1202)
. ...++.+||++|++.+++.+||.||+.+.+.++. ...++.+++++++++.+|+.+..++.+ +.||||||
T Consensus 68 ~~~~~~~~~ig~~~q~~~l~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LS~G~~ 139 (301)
T TIGR03522 68 QNPKEVQRNIGYLPEHNPLYLDMYVREYLQFIAGIYG---MKGQLLKQRVEEMIELVGLRPEQHKKI-----GQLSKGYR 139 (301)
T ss_pred cChHHHHhceEEecCCCCCCCCCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHCCCchHhcCch-----hhCCHHHH
Confidence 3 2345679999999999999999999998765532 223334456889999999998877764 57999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCCEEEEEcCC
Q 000979 762 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPL 841 (1202)
Q Consensus 762 qRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G~~ 841 (1202)
||++||+||+++|++|+|||||+|||+.+++.+++.|+++++ ++|||++||+++ ++.+.|||+++|++ |++++.|++
T Consensus 140 qrv~la~al~~~p~lliLDEPt~gLD~~~~~~l~~~l~~~~~-~~tiii~sH~l~-~~~~~~d~i~~l~~-G~i~~~g~~ 216 (301)
T TIGR03522 140 QRVGLAQALIHDPKVLILDEPTTGLDPNQLVEIRNVIKNIGK-DKTIILSTHIMQ-EVEAICDRVIIINK-GKIVADKKL 216 (301)
T ss_pred HHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHhcC-CCEEEEEcCCHH-HHHHhCCEEEEEEC-CEEEEeCCH
Confidence 999999999999999999999999999999999999999864 799999999986 68899999999985 899999986
Q ss_pred C
Q 000979 842 G 842 (1202)
Q Consensus 842 ~ 842 (1202)
+
T Consensus 217 ~ 217 (301)
T TIGR03522 217 D 217 (301)
T ss_pred H
Confidence 3
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. |
| >cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-39 Score=348.84 Aligned_cols=215 Identities=23% Similarity=0.281 Sum_probs=178.8
Q ss_pred eEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCC-----CCceEEEEEEEc
Q 000979 604 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRK-----TGGYITGNITIS 678 (1202)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~-----~~~~~~G~i~~~ 678 (1202)
++++|++++|+ ++.+|+|+||++++||+++|+||||||||||+++|+|.. + +.+|+|.++
T Consensus 1 i~~~~l~~~~~-------------~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~--~~~G~i~~~ 65 (227)
T cd03260 1 IELRDLNVYYG-------------DKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGA--PDEGEVLLD 65 (227)
T ss_pred CEEEEEEEEcC-------------CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCC--CCCeEEEEC
Confidence 35788888773 235899999999999999999999999999999999986 4 568999999
Q ss_pred CccCCc-----ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCC
Q 000979 679 GYPKKQ-----ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGV 753 (1202)
Q Consensus 679 g~~~~~-----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~ 753 (1202)
|.++.. ...++.++|++|++.++ .+||+||+.+....+. ....++.+++++++++.+++.+..+.... +
T Consensus 66 g~~~~~~~~~~~~~~~~i~~~~q~~~~~-~~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---~ 139 (227)
T cd03260 66 GKDIYDLDVDVLELRRRVGMVFQKPNPF-PGSIYDNVAYGLRLHG--IKLKEELDERVEEALRKAALWDEVKDRLH---A 139 (227)
T ss_pred CEEhhhcchHHHHHHhhEEEEecCchhc-cccHHHHHHhHHHhcC--CCcHHHHHHHHHHHHHHcCCChHHhccCC---c
Confidence 987532 23456799999998888 7999999988654321 11122234567889999999876555420 2
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCC
Q 000979 754 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGG 833 (1202)
Q Consensus 754 ~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG 833 (1202)
.+||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++ +|||++||+++ ++.+.||++++|.+ |
T Consensus 140 ~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~tii~~sH~~~-~~~~~~d~i~~l~~-G 216 (227)
T cd03260 140 LGLSGGQQQRLCLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKKE-YTIVIVTHNMQ-QAARVADRTAFLLN-G 216 (227)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhhC-cEEEEEeccHH-HHHHhCCEEEEEeC-C
Confidence 579999999999999999999999999999999999999999999999776 99999999986 57789999999985 8
Q ss_pred EEEEEcCCC
Q 000979 834 QEIYVGPLG 842 (1202)
Q Consensus 834 ~~~~~G~~~ 842 (1202)
++++.|+++
T Consensus 217 ~i~~~g~~~ 225 (227)
T cd03260 217 RLVEFGPTE 225 (227)
T ss_pred EEEEecCcc
Confidence 999999864
|
The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). |
| >cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-38 Score=346.52 Aligned_cols=215 Identities=27% Similarity=0.415 Sum_probs=180.8
Q ss_pred eEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCC
Q 000979 604 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 683 (1202)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 683 (1202)
++++|+++.|+.. ....++|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.
T Consensus 2 l~~~~v~~~~~~~---------~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~ 70 (218)
T cd03266 2 ITADALTKRFRDV---------KKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLE--PDAGFATVDGFDVV 70 (218)
T ss_pred eEEEEEEEecCCC---------CccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcC--CCCceEEECCEEcc
Confidence 5688999887421 011268999999999999999999999999999999999876 45899999998764
Q ss_pred c--ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHH
Q 000979 684 Q--ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQR 761 (1202)
Q Consensus 684 ~--~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqr 761 (1202)
. ..+++.++|++|++.+++.+||+||+.+....+ ....++.+++++++++.+++.+..+..+ +.||||||
T Consensus 71 ~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~ 142 (218)
T cd03266 71 KEPAEARRRLGFVSDSTGLYDRLTARENLEYFAGLY---GLKGDELTARLEELADRLGMEELLDRRV-----GGFSTGMR 142 (218)
T ss_pred cCHHHHHhhEEEecCCcccCcCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCHHHHhhhh-----hhcCHHHH
Confidence 3 234567999999999999999999998765432 1223344566889999999987766653 57999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCCEEEEEc
Q 000979 762 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVG 839 (1202)
Q Consensus 762 qRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G 839 (1202)
||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||+++ ++.+.+|++++|++ |+++..|
T Consensus 143 qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~-~~~~~~d~i~~l~~-G~i~~~~ 218 (218)
T cd03266 143 QKVAIARALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRALGKCILFSTHIMQ-EVERLCDRVVVLHR-GRVVYEG 218 (218)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhcCEEEEEEC-CEEeecC
Confidence 9999999999999999999999999999999999999999777999999999986 57788999999985 7887654
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein. |
| >cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-38 Score=346.09 Aligned_cols=209 Identities=28% Similarity=0.399 Sum_probs=173.9
Q ss_pred eEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCC
Q 000979 604 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 683 (1202)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 683 (1202)
++++|++++|+.. .+.+.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.
T Consensus 1 l~~~~l~~~~~~~---------~~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~--~~~G~i~~~g~~~~ 69 (218)
T cd03255 1 IELKNLSKTYGGG---------GEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDR--PTSGEVRVDGTDIS 69 (218)
T ss_pred CeEeeeEEEecCC---------CcceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcC--CCceeEEECCEehh
Confidence 3578999887410 011568999999999999999999999999999999999876 45899999998764
Q ss_pred ccc-------ccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCC
Q 000979 684 QET-------FARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGL 756 (1202)
Q Consensus 684 ~~~-------~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~L 756 (1202)
... .++.++|++|++.+++.+||+||+.+....+. ....+.++.++++++.+|+.+..++.+ +.|
T Consensus 70 ~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~L 141 (218)
T cd03255 70 KLSEKELAAFRRRHIGFVFQSFNLLPDLTALENVELPLLLAG---VPKKERRERAEELLERVGLGDRLNHYP-----SEL 141 (218)
T ss_pred hcchhHHHHHHhhcEEEEeeccccCCCCcHHHHHHHHHhhcC---CCHHHHHHHHHHHHHHcCCchhhhcCh-----hhc
Confidence 311 24579999999999999999999998764431 222334456889999999987766653 579
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCCHHHHHhcceEEEEecCCE
Q 000979 757 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKRGGQ 834 (1202)
Q Consensus 757 SgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~ 834 (1202)
|||||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++++ .|+|||++||+++ ++ +.||++++|++ |+
T Consensus 142 S~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~-~~~d~v~~l~~-G~ 217 (218)
T cd03255 142 SGGQQQRVAIARALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPE-LA-EYADRIIELRD-GK 217 (218)
T ss_pred CHHHHHHHHHHHHHccCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHH-HH-hhhcEEEEeeC-Cc
Confidence 99999999999999999999999999999999999999999999976 5899999999986 34 48999999985 55
|
They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. |
| >cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-38 Score=344.86 Aligned_cols=221 Identities=35% Similarity=0.603 Sum_probs=182.2
Q ss_pred eEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCC-CceEEEEEEEcCccC
Q 000979 604 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKT-GGYITGNITISGYPK 682 (1202)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~-~~~~~G~i~~~g~~~ 682 (1202)
+.|+||++.++..+ ..+++|+|+||++++||+++|+||||||||||+++|+|..+ +.+.+|+|.++|.+.
T Consensus 4 ~~~~~~~~~~~~~~---------~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~ 74 (226)
T cd03234 4 LPWWDVGLKAKNWN---------KYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPR 74 (226)
T ss_pred ceeecceeeeecCc---------cccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEEC
Confidence 56899999885210 13568999999999999999999999999999999999764 123589999999876
Q ss_pred CcccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHH-HHHHcCCCccccccccCCCCCCCCHHHH
Q 000979 683 KQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDE-VMELVELNPLRQSLVGLPGVSGLSTEQR 761 (1202)
Q Consensus 683 ~~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~-~l~~l~l~~~~~~~~~~~~~~~LSgGqr 761 (1202)
.....++.++|++|++.+++.+||+||+.+............+.....+++ .++.+++.+..++. ++.||||||
T Consensus 75 ~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~ 149 (226)
T cd03234 75 KPDQFQKCVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIGGNL-----VKGISGGER 149 (226)
T ss_pred ChHHhcccEEEeCCCCccCcCCcHHHHHHHHHHhhcccccchHHHHHHHHHHHHHhhcchhhhccc-----ccCcCHHHH
Confidence 544567789999999999999999999998765432221122222234455 88888887766654 357999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCCEEEEEc
Q 000979 762 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVG 839 (1202)
Q Consensus 762 qRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G 839 (1202)
||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++.++|.|+|+++|++..++.+.+|++++|++ |++++.|
T Consensus 150 qrl~laral~~~p~illlDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~-G~i~~~g 226 (226)
T cd03234 150 RRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLARRNRIVILTIHQPRSDLFRLFDRILLLSS-GEIVYSG 226 (226)
T ss_pred HHHHHHHHHHhCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHhCCEEEEEeC-CEEEecC
Confidence 9999999999999999999999999999999999999998777899999999985468899999999985 8998765
|
The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in |
| >COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-39 Score=314.07 Aligned_cols=215 Identities=26% Similarity=0.388 Sum_probs=185.5
Q ss_pred eEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCC
Q 000979 604 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 683 (1202)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 683 (1202)
+..++++.+|+.. ...+|+|||++|.+||.++++||||||||||||+++|..+ |..|.|.+||.++.
T Consensus 4 l~~~~~sl~y~g~-----------~~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~--P~~G~i~l~~r~i~ 70 (259)
T COG4525 4 LNVSHLSLSYEGK-----------PRSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVT--PSRGSIQLNGRRIE 70 (259)
T ss_pred eehhheEEecCCc-----------chhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcC--cccceEEECCEecc
Confidence 3456677776522 1458999999999999999999999999999999999887 56899999999876
Q ss_pred cccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHH
Q 000979 684 QETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKR 763 (1202)
Q Consensus 684 ~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqR 763 (1202)
... ..-|.|+|++.++|.+|+.||+.|+.+++ ..++.+|.+++.+.+..+||.+..+.. +-+||||||||
T Consensus 71 gPg--aergvVFQ~~~LlPWl~~~dNvafgL~l~---Gi~k~~R~~~a~q~l~~VgL~~~~~~~-----i~qLSGGmrQR 140 (259)
T COG4525 71 GPG--AERGVVFQNEALLPWLNVIDNVAFGLQLR---GIEKAQRREIAHQMLALVGLEGAEHKY-----IWQLSGGMRQR 140 (259)
T ss_pred CCC--ccceeEeccCccchhhHHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHhCcccccccc-----eEeecchHHHH
Confidence 532 23489999999999999999999999887 466788889999999999999887766 35799999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-hCCCEEEEEecCCCHHHHHhcceEEEEecC-CEEEEEcCC
Q 000979 764 LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DTGRTVVCTIHQPSIDIFEAFDELFLMKRG-GQEIYVGPL 841 (1202)
Q Consensus 764 v~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~-~~g~tvi~~~H~~~~~~~~~~d~v~~l~~g-G~~~~~G~~ 841 (1202)
+.|||||+.+|++|+||||.++||.-+++.++++|-++. +.|+.++++||+.+ +..-+++|+++|+-+ ||++..=++
T Consensus 141 vGiARALa~eP~~LlLDEPfgAlDa~tRe~mQelLldlw~~tgk~~lliTH~ie-EAlflatrLvvlsp~pgRvv~~~~~ 219 (259)
T COG4525 141 VGIARALAVEPQLLLLDEPFGALDALTREQMQELLLDLWQETGKQVLLITHDIE-EALFLATRLVVLSPGPGRVVERLPL 219 (259)
T ss_pred HHHHHHhhcCcceEeecCchhhHHHHHHHHHHHHHHHHHHHhCCeEEEEeccHH-HHHhhhheeEEecCCCceeeEecCC
Confidence 999999999999999999999999999999999998875 45999999999987 566688999999843 688877666
Q ss_pred C
Q 000979 842 G 842 (1202)
Q Consensus 842 ~ 842 (1202)
+
T Consensus 220 d 220 (259)
T COG4525 220 D 220 (259)
T ss_pred C
Confidence 3
|
|
| >cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-38 Score=342.67 Aligned_cols=207 Identities=29% Similarity=0.393 Sum_probs=176.4
Q ss_pred eEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCC
Q 000979 604 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 683 (1202)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 683 (1202)
++++|++++|+ ++.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.
T Consensus 1 l~~~~l~~~~~-------------~~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~ 65 (208)
T cd03268 1 LKTNDLTKTYG-------------KKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIK--PDSGEITFDGKSYQ 65 (208)
T ss_pred CEEEEEEEEEC-------------CeEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcC--CCceEEEECCCccc
Confidence 35788888873 2458999999999999999999999999999999999876 45899999998764
Q ss_pred c-ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHH
Q 000979 684 Q-ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRK 762 (1202)
Q Consensus 684 ~-~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrq 762 (1202)
. ...++.++|++|++.+++.+||+||+.+....+. .. +++++++++.+++.+..++.+ +.|||||||
T Consensus 66 ~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~---~~----~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~q 133 (208)
T cd03268 66 KNIEALRRIGALIEAPGFYPNLTARENLRLLARLLG---IR----KKRIDEVLDVVGLKDSAKKKV-----KGFSLGMKQ 133 (208)
T ss_pred chHHHHhhEEEecCCCccCccCcHHHHHHHHHHhcC---Cc----HHHHHHHHHHcCCHHHHhhhH-----hhCCHHHHH
Confidence 3 2345678999999999999999999988654321 11 234788999999987766653 579999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCCEEEEEc
Q 000979 763 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVG 839 (1202)
Q Consensus 763 Rv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G 839 (1202)
|++|||||+.+|++|+|||||+|||+.++..+.+.|++++++|+|+|++||++. ++.+.+|++++|++ |++++.|
T Consensus 134 rv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~-~~~~~~d~v~~l~~-g~i~~~g 208 (208)
T cd03268 134 RLGIALALLGNPDLLILDEPTNGLDPDGIKELRELILSLRDQGITVLISSHLLS-EIQKVADRIGIINK-GKLIEEG 208 (208)
T ss_pred HHHHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHH-HHHHhcCEEEEEEC-CEEEecC
Confidence 999999999999999999999999999999999999998777899999999986 56788999999985 7888765
|
Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. |
| >cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-38 Score=352.15 Aligned_cols=218 Identities=26% Similarity=0.307 Sum_probs=179.4
Q ss_pred eEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCC
Q 000979 604 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 683 (1202)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 683 (1202)
++++|++++|.. ++.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.
T Consensus 1 l~~~~l~~~~~~------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~ 66 (241)
T cd03256 1 IEVENLSKTYPN------------GKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVE--PTSGSVLIDGTDIN 66 (241)
T ss_pred CEEeeEEEecCC------------ccEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC--CCCceEEECCEecc
Confidence 357888887731 1458999999999999999999999999999999999876 45899999998764
Q ss_pred cc------cccceEEEeecCCCCCCCCCHHHHHHHHHHccC-----CCCCCHHHHHHHHHHHHHHcCCCccccccccCCC
Q 000979 684 QE------TFARISGYCEQNDIHSPFVTIYESLLFSAWLRL-----SPEVDSETRKMFIDEVMELVELNPLRQSLVGLPG 752 (1202)
Q Consensus 684 ~~------~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~-----~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~ 752 (1202)
.. ..++.++|++|++.+++.+||+||+.+...... ......+..+++++++++.+++.+..++.
T Consensus 67 ~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~----- 141 (241)
T cd03256 67 KLKGKALRQLRRQIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQR----- 141 (241)
T ss_pred ccCHhHHHHHHhccEEEcccCcccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhhCCC-----
Confidence 21 245679999999999999999999987532110 00111123345678899999998766654
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhcceEEEEec
Q 000979 753 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKR 831 (1202)
Q Consensus 753 ~~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~ 831 (1202)
+..||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||+++ ++.+.+|++++|.+
T Consensus 142 ~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~-~~~~~~d~v~~l~~ 220 (241)
T cd03256 142 ADQLSGGQQQRVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVD-LAREYADRIVGLKD 220 (241)
T ss_pred cccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC
Confidence 3579999999999999999999999999999999999999999999998764 899999999987 57779999999985
Q ss_pred CCEEEEEcCCC
Q 000979 832 GGQEIYVGPLG 842 (1202)
Q Consensus 832 gG~~~~~G~~~ 842 (1202)
|++++.|+++
T Consensus 221 -G~i~~~~~~~ 230 (241)
T cd03256 221 -GRIVFDGPPA 230 (241)
T ss_pred -CEEEeecCHH
Confidence 8999999864
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-38 Score=357.75 Aligned_cols=219 Identities=21% Similarity=0.304 Sum_probs=182.0
Q ss_pred eEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCC
Q 000979 604 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 683 (1202)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 683 (1202)
++++||++.|+... ...+.+|+||||++++||++||+||||||||||+++|+|..+ +.+|+|.++|.++.
T Consensus 3 l~~~~l~~~y~~~~--------~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~ 72 (287)
T PRK13637 3 IKIENLTHIYMEGT--------PFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLK--PTSGKIIIDGVDIT 72 (287)
T ss_pred EEEEEEEEECCCCC--------ccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC--CCccEEEECCEECC
Confidence 68899999885210 012468999999999999999999999999999999999876 45899999998764
Q ss_pred c-----ccccceEEEeecCCC-CCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCC--ccccccccCCCCCC
Q 000979 684 Q-----ETFARISGYCEQNDI-HSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELN--PLRQSLVGLPGVSG 755 (1202)
Q Consensus 684 ~-----~~~~~~~~~v~q~~~-~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~--~~~~~~~~~~~~~~ 755 (1202)
. ...++.+|||+|++. .+...||+||+.|..... ..+.++.+++++++++.+||. +..++. ++.
T Consensus 73 ~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~~-----~~~ 144 (287)
T PRK13637 73 DKKVKLSDIRKKVGLVFQYPEYQLFEETIEKDIAFGPINL---GLSEEEIENRVKRAMNIVGLDYEDYKDKS-----PFE 144 (287)
T ss_pred CcCccHHHHhhceEEEecCchhccccccHHHHHHhHHHHC---CCCHHHHHHHHHHHHHHcCCCchhhccCC-----ccc
Confidence 3 134578999999863 333579999999865432 234455556788999999996 455554 357
Q ss_pred CCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhcceEEEEecCCE
Q 000979 756 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQ 834 (1202)
Q Consensus 756 LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~ 834 (1202)
||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||+++ ++.+.|||+++|++ |+
T Consensus 145 LSgGq~qrv~iAraL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~-~~~~~~drv~~l~~-G~ 222 (287)
T PRK13637 145 LSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSME-DVAKLADRIIVMNK-GK 222 (287)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CE
Confidence 9999999999999999999999999999999999999999999999765 899999999986 57788999999985 89
Q ss_pred EEEEcCCC
Q 000979 835 EIYVGPLG 842 (1202)
Q Consensus 835 ~~~~G~~~ 842 (1202)
+++.|++.
T Consensus 223 i~~~g~~~ 230 (287)
T PRK13637 223 CELQGTPR 230 (287)
T ss_pred EEEECCHH
Confidence 99999863
|
|
| >cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-38 Score=345.42 Aligned_cols=215 Identities=25% Similarity=0.388 Sum_probs=180.8
Q ss_pred eEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCC
Q 000979 604 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 683 (1202)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 683 (1202)
++++|+++.|+. +++++|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+..
T Consensus 1 l~~~~l~~~~~~-----------~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~ 67 (220)
T cd03263 1 LQIRNLTKTYKK-----------GTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELR--PTSGTAYINGYSIR 67 (220)
T ss_pred CEEEeeEEEeCC-----------CCceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEecc
Confidence 457888888741 12468999999999999999999999999999999999876 45899999998764
Q ss_pred c--ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHH
Q 000979 684 Q--ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQR 761 (1202)
Q Consensus 684 ~--~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqr 761 (1202)
. ...++.++|++|++.+++.+|++||+.+....+. ...++.+++++++++.+++.+..++.+ +.||||||
T Consensus 68 ~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~ 139 (220)
T cd03263 68 TDRKAARQSLGYCPQFDALFDELTVREHLRFYARLKG---LPKSEIKEEVELLLRVLGLTDKANKRA-----RTLSGGMK 139 (220)
T ss_pred cchHHHhhhEEEecCcCCccccCCHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCHHHHhChh-----hhCCHHHH
Confidence 3 2345679999999999989999999988654332 223333456789999999987766653 57999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCCEEEEEcCC
Q 000979 762 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPL 841 (1202)
Q Consensus 762 qRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G~~ 841 (1202)
||++|||||+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||++||+++ .+.+.+|++++|.+ |+++..|++
T Consensus 140 qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~~-~~~~~~d~i~~l~~-g~i~~~~~~ 216 (220)
T cd03263 140 RKLSLAIALIGGPSVLLLDEPTSGLDPASRRAIWDLILEVRK-GRSIILTTHSMD-EAEALCDRIAIMSD-GKLRCIGSP 216 (220)
T ss_pred HHHHHHHHHhcCCCEEEECCCCCCCCHHHHHHHHHHHHHHhc-CCEEEEEcCCHH-HHHHhcCEEEEEEC-CEEEecCCH
Confidence 999999999999999999999999999999999999999865 699999999986 57788999999985 899999876
Q ss_pred C
Q 000979 842 G 842 (1202)
Q Consensus 842 ~ 842 (1202)
+
T Consensus 217 ~ 217 (220)
T cd03263 217 Q 217 (220)
T ss_pred H
Confidence 3
|
Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. |
| >cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-38 Score=355.11 Aligned_cols=204 Identities=25% Similarity=0.309 Sum_probs=174.1
Q ss_pred CceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCCcc---c----ccceEEEeecCCC
Q 000979 627 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQE---T----FARISGYCEQNDI 699 (1202)
Q Consensus 627 ~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~---~----~~~~~~~v~q~~~ 699 (1202)
+++.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+.... . .++.++|++|++.
T Consensus 35 ~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~--p~~G~i~i~g~~~~~~~~~~~~~~~~~~i~~v~q~~~ 112 (269)
T cd03294 35 GQTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIE--PTSGKVLIDGQDIAAMSRKELRELRRKKISMVFQSFA 112 (269)
T ss_pred CCceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCeEEEECCEEccccChhhhhhhhcCcEEEEecCcc
Confidence 45679999999999999999999999999999999999876 4589999999875421 1 1357999999999
Q ss_pred CCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEE
Q 000979 700 HSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFM 779 (1202)
Q Consensus 700 ~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~illl 779 (1202)
+++.+||+||+.+..... .....+.+++++++++.+++.+..++.+ +.||||||||++|||||+.+|++|+|
T Consensus 113 ~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~Gq~qrv~lAral~~~p~illL 184 (269)
T cd03294 113 LLPHRTVLENVAFGLEVQ---GVPRAEREERAAEALELVGLEGWEHKYP-----DELSGGMQQRVGLARALAVDPDILLM 184 (269)
T ss_pred cCCCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCHhHhhCCc-----ccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 999999999998875432 1223334456788999999987777654 57999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhcceEEEEecCCEEEEEcCCC
Q 000979 780 DEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLG 842 (1202)
Q Consensus 780 DEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G~~~ 842 (1202)
||||+|||+.++..+.+.|++++++ |+|||++||+++ ++.+.+|++++|++ |+++..|+++
T Consensus 185 DEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~-~~~~~~d~v~~l~~-G~i~~~g~~~ 246 (269)
T cd03294 185 DEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLD-EALRLGDRIAIMKD-GRLVQVGTPE 246 (269)
T ss_pred cCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEEC-CEEEEeCCHH
Confidence 9999999999999999999998754 899999999986 57789999999984 8999999863
|
This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-38 Score=342.01 Aligned_cols=203 Identities=27% Similarity=0.391 Sum_probs=169.7
Q ss_pred EeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCCcc
Q 000979 606 FDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQE 685 (1202)
Q Consensus 606 ~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~ 685 (1202)
++|++++|+. .+.+|+|+||++++||+++|+|||||||||||++|+|..+ +.+|+|.++|.++...
T Consensus 2 ~~~l~~~~~~------------~~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~ 67 (205)
T cd03226 2 IENISFSYKK------------GTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIK--ESSGSILLNGKPIKAK 67 (205)
T ss_pred cccEEEEeCC------------cCceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEEhhhH
Confidence 4677877631 1458999999999999999999999999999999999876 4589999999876443
Q ss_pred cccceEEEeecCCC-CCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHH
Q 000979 686 TFARISGYCEQNDI-HSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRL 764 (1202)
Q Consensus 686 ~~~~~~~~v~q~~~-~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv 764 (1202)
..++.++|++|++. .+..+|++||+.+..... . . .+++++++++.+++.+..++.+ +.||||||||+
T Consensus 68 ~~~~~i~~~~q~~~~~~~~~tv~e~l~~~~~~~---~--~--~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv 135 (205)
T cd03226 68 ERRKSIGYVMQDVDYQLFTDSVREELLLGLKEL---D--A--GNEQAETVLKDLDLYALKERHP-----LSLSGGQKQRL 135 (205)
T ss_pred HhhcceEEEecChhhhhhhccHHHHHhhhhhhc---C--c--cHHHHHHHHHHcCCchhcCCCc-----hhCCHHHHHHH
Confidence 45567999999974 344679999998764321 1 1 1234788999999988777653 57999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCCEEE
Q 000979 765 TIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEI 836 (1202)
Q Consensus 765 ~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~ 836 (1202)
+|||||+.+|++|+|||||+|||+.++..+.+.|++++++|+|+|++||+++ ++.+.+|++++|++ |+++
T Consensus 136 ~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l~~-G~iv 205 (205)
T cd03226 136 AIAAALLSGKDLLIFDEPTSGLDYKNMERVGELIRELAAQGKAVIVITHDYE-FLAKVCDRVLLLAN-GAIV 205 (205)
T ss_pred HHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEC
Confidence 9999999999999999999999999999999999999777999999999986 57778999999985 7764
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-38 Score=346.95 Aligned_cols=217 Identities=24% Similarity=0.314 Sum_probs=182.1
Q ss_pred eEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCC
Q 000979 604 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 683 (1202)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 683 (1202)
++++|+++.|+.. .+.+++|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.
T Consensus 2 i~~~~l~~~~~~~---------~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~ 70 (233)
T cd03258 2 IELKNVSKVFGDT---------GGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLER--PTSGSVLVDGTDLT 70 (233)
T ss_pred eEEecceEEccCC---------CCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEEcc
Confidence 5688999887411 011368999999999999999999999999999999999876 45899999998764
Q ss_pred cc------cccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCC
Q 000979 684 QE------TFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLS 757 (1202)
Q Consensus 684 ~~------~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LS 757 (1202)
.. ..++.++|++|++.+++.+|++||+.+....+. .......+.++++++.+++.+..+.. ++.||
T Consensus 71 ~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS 142 (233)
T cd03258 71 LLSGKELRKARRRIGMIFQHFNLLSSRTVFENVALPLEIAG---VPKAEIEERVLELLELVGLEDKADAY-----PAQLS 142 (233)
T ss_pred cCCHHHHHHHHhheEEEccCcccCCCCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHCCChhhhhcC-----hhhCC
Confidence 31 235679999999999999999999988654331 22333445678999999998776665 35799
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhcceEEEEecCCEEE
Q 000979 758 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEI 836 (1202)
Q Consensus 758 gGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~ 836 (1202)
||||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||+++ ++.+.+|++++|.+ |+++
T Consensus 143 ~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~-~~~~~~d~i~~l~~-G~i~ 220 (233)
T cd03258 143 GGQKQRVGIARALANNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEME-VVKRICDRVAVMEK-GEVV 220 (233)
T ss_pred HHHHHHHHHHHHHhcCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEE
Confidence 99999999999999999999999999999999999999999998765 899999999986 57788999999984 8999
Q ss_pred EEcCC
Q 000979 837 YVGPL 841 (1202)
Q Consensus 837 ~~G~~ 841 (1202)
..|+.
T Consensus 221 ~~~~~ 225 (233)
T cd03258 221 EEGTV 225 (233)
T ss_pred EecCH
Confidence 99875
|
Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13651 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-38 Score=357.57 Aligned_cols=219 Identities=25% Similarity=0.301 Sum_probs=181.1
Q ss_pred eEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCC
Q 000979 604 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 683 (1202)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 683 (1202)
++++|++++|+... .....+|+||||+|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+..
T Consensus 3 i~~~~l~~~y~~~~--------~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~--p~~G~i~~~g~~~~ 72 (305)
T PRK13651 3 IKVKNIVKIFNKKL--------PTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLL--PDTGTIEWIFKDEK 72 (305)
T ss_pred EEEEEEEEEECCCC--------CccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCC--CCCcEEEEeceecc
Confidence 78899999985210 112358999999999999999999999999999999999876 34799999886531
Q ss_pred ---------------------------cccccceEEEeecCC-CCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHH
Q 000979 684 ---------------------------QETFARISGYCEQND-IHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVM 735 (1202)
Q Consensus 684 ---------------------------~~~~~~~~~~v~q~~-~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l 735 (1202)
....++.+|||+|++ ..+...||+||+.|+.... ..+.++.++++++++
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~---~~~~~~~~~~~~~~l 149 (305)
T PRK13651 73 NKKKTKEKEKVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSM---GVSKEEAKKRAAKYI 149 (305)
T ss_pred cccccccccccccccccccccccccchHHHHHhceEEEeeCcccccccccHHHHHHhhHHHc---CCCHHHHHHHHHHHH
Confidence 123456799999985 2344579999999875432 234445566789999
Q ss_pred HHcCCC-ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecC
Q 000979 736 ELVELN-PLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQ 814 (1202)
Q Consensus 736 ~~l~l~-~~~~~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~ 814 (1202)
+.+||. +..++. +..||||||||++||++|+.+|++|+|||||+|||+.++..+++.|++++++|+|||++||+
T Consensus 150 ~~~gL~~~~~~~~-----~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivtHd 224 (305)
T PRK13651 150 ELVGLDESYLQRS-----PFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHD 224 (305)
T ss_pred HHcCCChhhhhCC-----hhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeeC
Confidence 999996 556654 35799999999999999999999999999999999999999999999998779999999999
Q ss_pred CCHHHHHhcceEEEEecCCEEEEEcCCC
Q 000979 815 PSIDIFEAFDELFLMKRGGQEIYVGPLG 842 (1202)
Q Consensus 815 ~~~~~~~~~d~v~~l~~gG~~~~~G~~~ 842 (1202)
++ .+.+.+||+++|++ |++++.|+++
T Consensus 225 ~~-~~~~~adrv~vl~~-G~i~~~g~~~ 250 (305)
T PRK13651 225 LD-NVLEWTKRTIFFKD-GKIIKDGDTY 250 (305)
T ss_pred HH-HHHHhCCEEEEEEC-CEEEEECCHH
Confidence 86 57889999999985 8999999874
|
|
| >PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-38 Score=346.69 Aligned_cols=215 Identities=22% Similarity=0.331 Sum_probs=182.0
Q ss_pred eEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCC
Q 000979 604 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 683 (1202)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 683 (1202)
++++|+++.|+ ++.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.
T Consensus 2 l~~~~l~~~~~-------------~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~ 66 (240)
T PRK09493 2 IEFKNVSKHFG-------------PTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEE--ITSGDLIVDGLKVN 66 (240)
T ss_pred EEEEeEEEEEC-------------CeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEECC
Confidence 57889998873 2458999999999999999999999999999999999876 45899999998764
Q ss_pred c-----ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCH
Q 000979 684 Q-----ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLST 758 (1202)
Q Consensus 684 ~-----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSg 758 (1202)
. ...++.++|++|++.+++.+||+||+.+...... .....+.++.++++++.+|+.+..+.. ++.|||
T Consensus 67 ~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~-----~~~LS~ 139 (240)
T PRK09493 67 DPKVDERLIRQEAGMVFQQFYLFPHLTALENVMFGPLRVR--GASKEEAEKQARELLAKVGLAERAHHY-----PSELSG 139 (240)
T ss_pred cCChhHHHHhhceEEEecccccCCCCcHHHHHHhHHHHhc--CCCHHHHHHHHHHHHHHcCChHHHhcC-----hhhcCH
Confidence 2 2345679999999999999999999987642111 123334455678999999998766665 357999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCCEEEEE
Q 000979 759 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYV 838 (1202)
Q Consensus 759 GqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~ 838 (1202)
|||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++|+|+|++||+++ ++.+.||++++|++ |++++.
T Consensus 140 G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-G~i~~~ 217 (240)
T PRK09493 140 GQQQRVAIARALAVKPKLMLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIG-FAEKVASRLIFIDK-GRIAED 217 (240)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEee
Confidence 9999999999999999999999999999999999999999998777999999999986 57788999999985 899999
Q ss_pred cCCC
Q 000979 839 GPLG 842 (1202)
Q Consensus 839 G~~~ 842 (1202)
|+++
T Consensus 218 g~~~ 221 (240)
T PRK09493 218 GDPQ 221 (240)
T ss_pred CCHH
Confidence 9863
|
|
| >PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-38 Score=343.17 Aligned_cols=217 Identities=24% Similarity=0.317 Sum_probs=180.1
Q ss_pred eeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccC
Q 000979 603 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 682 (1202)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 682 (1202)
.++++||++.|+.. ...+.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++
T Consensus 5 ~l~~~~l~~~~~~~---------~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~i 73 (233)
T PRK11629 5 LLQCDNLCKRYQEG---------SVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDT--PTSGDVIFNGQPM 73 (233)
T ss_pred eEEEEeEEEEcCCC---------CcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEEc
Confidence 37899999988421 012468999999999999999999999999999999999876 4589999999876
Q ss_pred Cccc------c-cceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCC
Q 000979 683 KQET------F-ARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSG 755 (1202)
Q Consensus 683 ~~~~------~-~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~ 755 (1202)
.... . ++.++|++|++.+++.+|++||+.+..... ....++.+++++++++.+|+.+..++. ++.
T Consensus 74 ~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~-----~~~ 145 (233)
T PRK11629 74 SKLSSAAKAELRNQKLGFIYQFHHLLPDFTALENVAMPLLIG---KKKPAEINSRALEMLAAVGLEHRANHR-----PSE 145 (233)
T ss_pred CcCCHHHHHHHHhccEEEEecCcccCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchhhhCC-----hhh
Confidence 4311 2 256899999999999999999999865432 122334455688999999998766654 357
Q ss_pred CCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCCHHHHHhcceEEEEecCCE
Q 000979 756 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKRGGQ 834 (1202)
Q Consensus 756 LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~ 834 (1202)
||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++++ +|+|||++||+++ ++ +.+|++++|. +|+
T Consensus 146 LSgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~~-~~-~~~~~~~~l~-~G~ 222 (233)
T PRK11629 146 LSGGERQRVAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQ-LA-KRMSRQLEMR-DGR 222 (233)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HH-HhhCEEEEEE-CCE
Confidence 999999999999999999999999999999999999999999999875 5899999999986 34 4568999997 489
Q ss_pred EEEEcCC
Q 000979 835 EIYVGPL 841 (1202)
Q Consensus 835 ~~~~G~~ 841 (1202)
++..|+.
T Consensus 223 i~~~~~~ 229 (233)
T PRK11629 223 LTAELSL 229 (233)
T ss_pred EEEEecc
Confidence 9998875
|
|
| >PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-38 Score=353.09 Aligned_cols=215 Identities=25% Similarity=0.340 Sum_probs=181.5
Q ss_pred eeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccC
Q 000979 603 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 682 (1202)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 682 (1202)
.++++|+++.|+ +++.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+.
T Consensus 4 ~l~~~~l~~~~~------------~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~ 69 (274)
T PRK13647 4 IIEVEDLHFRYK------------DGTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYL--PQRGRVKVMGREV 69 (274)
T ss_pred eEEEEEEEEEeC------------CCCeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC--CCceEEEECCEEC
Confidence 378999999884 12358999999999999999999999999999999999876 4589999999876
Q ss_pred Cc---ccccceEEEeecCCC-CCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCH
Q 000979 683 KQ---ETFARISGYCEQNDI-HSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLST 758 (1202)
Q Consensus 683 ~~---~~~~~~~~~v~q~~~-~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSg 758 (1202)
.. ...++.++|++|++. .++..||+||+.|..... ..+.++.+++++++++.+++.+..++.+ ..|||
T Consensus 70 ~~~~~~~~~~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----~~LSg 141 (274)
T PRK13647 70 NAENEKWVRSKVGLVFQDPDDQVFSSTVWDDVAFGPVNM---GLDKDEVERRVEEALKAVRMWDFRDKPP-----YHLSY 141 (274)
T ss_pred CCCCHHHHHhhEEEEecChhhhhccCcHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHCCCHHHhcCCh-----hhCCH
Confidence 43 233567999999863 445689999998864322 2233344456889999999987777653 57999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCCEEEEE
Q 000979 759 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYV 838 (1202)
Q Consensus 759 GqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~ 838 (1202)
|||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||+++ .+.+.|||+++|++ |++++.
T Consensus 142 G~~qrv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tili~tH~~~-~~~~~~d~i~~l~~-G~i~~~ 219 (274)
T PRK13647 142 GQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDVD-LAAEWADQVIVLKE-GRVLAE 219 (274)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEE
Confidence 9999999999999999999999999999999999999999999877999999999986 56789999999985 899999
Q ss_pred cCC
Q 000979 839 GPL 841 (1202)
Q Consensus 839 G~~ 841 (1202)
|++
T Consensus 220 g~~ 222 (274)
T PRK13647 220 GDK 222 (274)
T ss_pred CCH
Confidence 986
|
|
| >cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-38 Score=342.12 Aligned_cols=207 Identities=25% Similarity=0.367 Sum_probs=174.6
Q ss_pred eEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCC
Q 000979 604 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 683 (1202)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 683 (1202)
++++|+++.|+ +++.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.
T Consensus 1 l~~~~l~~~~~------------~~~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~i~ 66 (214)
T cd03292 1 IEFINVTKTYP------------NGTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEEL--PTSGTIRVNGQDVS 66 (214)
T ss_pred CEEEEEEEEeC------------CCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEEcc
Confidence 35788888873 12358999999999999999999999999999999999876 45899999998754
Q ss_pred cc------cccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCC
Q 000979 684 QE------TFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLS 757 (1202)
Q Consensus 684 ~~------~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LS 757 (1202)
.. ..++.++|++|++.+++.+|++||+.+....+. ...++.+++++++++.+++.+..++.. ++||
T Consensus 67 ~~~~~~~~~~~~~i~~v~q~~~~~~~~t~~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS 138 (214)
T cd03292 67 DLRGRAIPYLRRKIGVVFQDFRLLPDRNVYENVAFALEVTG---VPPREIRKRVPAALELVGLSHKHRALP-----AELS 138 (214)
T ss_pred cCCHHHHHHHHHheEEEecCchhccCCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCHHHhhCCh-----hhcC
Confidence 21 245679999999999999999999988754321 223334456789999999987666653 5799
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCCE
Q 000979 758 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQ 834 (1202)
Q Consensus 758 gGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~ 834 (1202)
||||||++|||||+.+|++++|||||+|||+.++..+.+.|++++++|+|+|++||++. .+.+.+|++++|++ |+
T Consensus 139 ~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tiiivtH~~~-~~~~~~d~i~~l~~-G~ 213 (214)
T cd03292 139 GGEQQRVAIARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATHAKE-LVDTTRHRVIALER-GK 213 (214)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEeC-Cc
Confidence 99999999999999999999999999999999999999999998777999999999986 56778999999985 55
|
The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. |
| >cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-38 Score=345.40 Aligned_cols=211 Identities=28% Similarity=0.422 Sum_probs=176.2
Q ss_pred eEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCC
Q 000979 604 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 683 (1202)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 683 (1202)
++++|++++|+ ++++|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+..
T Consensus 1 l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~ 65 (222)
T cd03224 1 LEVENLNAGYG-------------KSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLP--PRSGSIRFDGRDIT 65 (222)
T ss_pred CEEeeEEeecC-------------CeeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEEcC
Confidence 35788888763 2358999999999999999999999999999999999876 45899999998754
Q ss_pred cc---c-ccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHc-CCCccccccccCCCCCCCCH
Q 000979 684 QE---T-FARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELV-ELNPLRQSLVGLPGVSGLST 758 (1202)
Q Consensus 684 ~~---~-~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l-~l~~~~~~~~~~~~~~~LSg 758 (1202)
.. . .++.++|++|++.+++.+|++||+.+...... ..+.+..++++++.+ ++.+..++. ++.|||
T Consensus 66 ~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~~-----~~~~~~~~~~~l~~~~~l~~~~~~~-----~~~LS~ 135 (222)
T cd03224 66 GLPPHERARAGIGYVPEGRRIFPELTVEENLLLGAYARR-----RAKRKARLERVYELFPRLKERRKQL-----AGTLSG 135 (222)
T ss_pred CCCHHHHHhcCeEEeccccccCCCCcHHHHHHHHhhhcC-----chhHHHHHHHHHHHHHhhhhhhhCc-----hhhCCH
Confidence 31 1 24569999999999999999999988754321 112234466777877 466555554 357999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCCEEEEE
Q 000979 759 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYV 838 (1202)
Q Consensus 759 GqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~ 838 (1202)
|||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||+++ ++.+.+|++++|++ |+++..
T Consensus 136 G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-G~i~~~ 213 (222)
T cd03224 136 GEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIRELRDEGVTILLVEQNAR-FALEIADRAYVLER-GRVVLE 213 (222)
T ss_pred HHHHHHHHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhccEEEEeeC-CeEEEe
Confidence 9999999999999999999999999999999999999999999777899999999986 57889999999985 899998
Q ss_pred cCC
Q 000979 839 GPL 841 (1202)
Q Consensus 839 G~~ 841 (1202)
|++
T Consensus 214 ~~~ 216 (222)
T cd03224 214 GTA 216 (222)
T ss_pred CCH
Confidence 875
|
The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. |
| >PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-38 Score=349.60 Aligned_cols=214 Identities=26% Similarity=0.359 Sum_probs=181.1
Q ss_pred eEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCC
Q 000979 604 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 683 (1202)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 683 (1202)
++++|+++.|+ ++.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.
T Consensus 4 l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~ 68 (250)
T PRK11264 4 IEVKNLVKKFH-------------GQTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQ--PEAGTIRVGDITID 68 (250)
T ss_pred EEEeceEEEEC-------------CeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCeEEEECCEEcc
Confidence 78899998874 2358999999999999999999999999999999999876 45899999998753
Q ss_pred c-----------ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCC
Q 000979 684 Q-----------ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPG 752 (1202)
Q Consensus 684 ~-----------~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~ 752 (1202)
. ...++.++|++|++.+++.+|++||+.+...... ....++.++.++++++.+|+.+..++.
T Consensus 69 ~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~----- 141 (250)
T PRK11264 69 TARSLSQQKGLIRQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVK--GEPKEEATARARELLAKVGLAGKETSY----- 141 (250)
T ss_pred ccccccchhhHHHHhhhhEEEEecCcccCCCCCHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCCcchhhCC-----
Confidence 2 1235678999999999999999999987543111 122334455678899999998766654
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecC
Q 000979 753 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 832 (1202)
Q Consensus 753 ~~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~g 832 (1202)
++.||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||+++ ++.+.+|++++|++
T Consensus 142 ~~~LS~Gq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~~~-~~~~~~d~i~~l~~- 219 (250)
T PRK11264 142 PRRLSGGQQQRVAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMS-FARDVADRAIFMDQ- 219 (250)
T ss_pred hhhCChHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEEC-
Confidence 3579999999999999999999999999999999999999999999999877999999999986 57788999999985
Q ss_pred CEEEEEcCC
Q 000979 833 GQEIYVGPL 841 (1202)
Q Consensus 833 G~~~~~G~~ 841 (1202)
|++++.|++
T Consensus 220 G~i~~~~~~ 228 (250)
T PRK11264 220 GRIVEQGPA 228 (250)
T ss_pred CEEEEeCCH
Confidence 899999885
|
|
| >TIGR02673 FtsE cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-38 Score=341.55 Aligned_cols=205 Identities=25% Similarity=0.332 Sum_probs=173.9
Q ss_pred eEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCC
Q 000979 604 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 683 (1202)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 683 (1202)
++++|++++|+ +++.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.
T Consensus 2 l~~~~l~~~~~------------~~~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~--~~~G~i~~~g~~~~ 67 (214)
T TIGR02673 2 IEFHNVSKAYP------------GGVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALT--PSRGQVRIAGEDVN 67 (214)
T ss_pred EEEEeeeEEeC------------CCceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEEcc
Confidence 57889988873 12358999999999999999999999999999999999876 45899999998764
Q ss_pred cc------cccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCC
Q 000979 684 QE------TFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLS 757 (1202)
Q Consensus 684 ~~------~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LS 757 (1202)
.. .+++.++|++|++.+++.+|++||+.+....+. ...+..+++++++++.+++.+..++.+ +.||
T Consensus 68 ~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS 139 (214)
T TIGR02673 68 RLRGRQLPLLRRRIGVVFQDFRLLPDRTVYENVALPLEVRG---KKEREIQRRVGAALRQVGLEHKADAFP-----EQLS 139 (214)
T ss_pred cCCHHHHHHHHhheEEEecChhhccCCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCChhhhhCCh-----hhCC
Confidence 21 245679999999999999999999998754321 223334456789999999987666553 5799
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEec
Q 000979 758 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKR 831 (1202)
Q Consensus 758 gGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~ 831 (1202)
||||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||+++ ++.+.||++++|++
T Consensus 140 ~G~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~-~~~~~~d~i~~l~~ 212 (214)
T TIGR02673 140 GGEQQRVAIARAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNKRGTTVIVATHDLS-LVDRVAHRVIILDD 212 (214)
T ss_pred HHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCEEEEecC
Confidence 99999999999999999999999999999999999999999998777999999999986 57788999999985
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein. |
| >PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-38 Score=355.58 Aligned_cols=218 Identities=25% Similarity=0.343 Sum_probs=181.5
Q ss_pred eEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCC
Q 000979 604 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 683 (1202)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 683 (1202)
++++|++++|+.. ....+.+|+|||++|++||+++|+||||||||||+++|+|... +.+|+|.++|.++.
T Consensus 2 i~~~~v~~~y~~~--------~~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i~ 71 (288)
T PRK13643 2 IKFEKVNYTYQPN--------SPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQ--PTEGKVTVGDIVVS 71 (288)
T ss_pred EEEEEEEEEeCCC--------CcccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCC--CCCcEEEECCEECc
Confidence 6789999998521 0112358999999999999999999999999999999999876 45899999998763
Q ss_pred c-------ccccceEEEeecCC--CCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCCCC
Q 000979 684 Q-------ETFARISGYCEQND--IHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELN-PLRQSLVGLPGV 753 (1202)
Q Consensus 684 ~-------~~~~~~~~~v~q~~--~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-~~~~~~~~~~~~ 753 (1202)
. ...++.+|||+|++ .+++ .||.||+.|+.... ..+.++.++++.++++.+++. +..++. +
T Consensus 72 ~~~~~~~~~~~~~~ig~v~q~~~~~l~~-~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----~ 142 (288)
T PRK13643 72 STSKQKEIKPVRKKVGVVFQFPESQLFE-ETVLKDVAFGPQNF---GIPKEKAEKIAAEKLEMVGLADEFWEKS-----P 142 (288)
T ss_pred cccccccHHHHHhhEEEEecCcchhccc-chHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCCChhhccCC-----c
Confidence 1 23466899999986 4454 69999999876432 233445566788999999995 344544 4
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCC
Q 000979 754 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGG 833 (1202)
Q Consensus 754 ~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG 833 (1202)
+.||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||+++ ++.+.|||+++|++ |
T Consensus 143 ~~LSgGqkqrvaiA~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~vtHd~~-~~~~~~dri~~l~~-G 220 (288)
T PRK13643 143 FELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLMD-DVADYADYVYLLEK-G 220 (288)
T ss_pred ccCCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhCCEEEEEEC-C
Confidence 579999999999999999999999999999999999999999999999877999999999986 57789999999985 8
Q ss_pred EEEEEcCCC
Q 000979 834 QEIYVGPLG 842 (1202)
Q Consensus 834 ~~~~~G~~~ 842 (1202)
++++.|+++
T Consensus 221 ~i~~~g~~~ 229 (288)
T PRK13643 221 HIISCGTPS 229 (288)
T ss_pred EEEEECCHH
Confidence 999999874
|
|
| >PRK11248 tauB taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-38 Score=346.83 Aligned_cols=212 Identities=27% Similarity=0.374 Sum_probs=179.9
Q ss_pred eEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCC
Q 000979 604 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 683 (1202)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 683 (1202)
++++|+++.|+ ++.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+..
T Consensus 2 l~~~~l~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~ 66 (255)
T PRK11248 2 LQISHLYADYG-------------GKPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVP--YQHGSITLDGKPVE 66 (255)
T ss_pred EEEEEEEEEeC-------------CeeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEECC
Confidence 57889998873 2458999999999999999999999999999999999876 45899999998764
Q ss_pred cccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHH
Q 000979 684 QETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKR 763 (1202)
Q Consensus 684 ~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqR 763 (1202)
. ..+.++|++|++.+++.+||+||+.+....+ .....+.+++++++++.+++.+..++. +..||||||||
T Consensus 67 ~--~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~-----~~~LSgGq~qr 136 (255)
T PRK11248 67 G--PGAERGVVFQNEGLLPWRNVQDNVAFGLQLA---GVEKMQRLEIAHQMLKKVGLEGAEKRY-----IWQLSGGQRQR 136 (255)
T ss_pred C--CCCcEEEEeCCCccCCCCcHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCChhHhhCC-----hhhCCHHHHHH
Confidence 3 2345799999999999999999998765432 122333445688999999998766654 35799999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCCHHHHHhcceEEEEec-CCEEEEEcCC
Q 000979 764 LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKR-GGQEIYVGPL 841 (1202)
Q Consensus 764 v~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~v~~l~~-gG~~~~~G~~ 841 (1202)
++|||||+.+|++|+|||||+|||+.++..+.+.|+++++ +|+|||++||+++ ++.+.||++++|++ +|+++..++.
T Consensus 137 l~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tviivsH~~~-~~~~~~d~i~~l~~~~G~i~~~~~~ 215 (255)
T PRK11248 137 VGIARALAANPQLLLLDEPFGALDAFTREQMQTLLLKLWQETGKQVLLITHDIE-EAVFMATELVLLSPGPGRVVERLPL 215 (255)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEeCCCcEEEEEecC
Confidence 9999999999999999999999999999999999999854 5899999999986 57889999999984 5899988875
|
|
| >TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-38 Score=351.33 Aligned_cols=218 Identities=24% Similarity=0.280 Sum_probs=179.4
Q ss_pred eEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCC
Q 000979 604 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 683 (1202)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 683 (1202)
++++|++++|. .++.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.
T Consensus 2 l~~~~l~~~~~------------~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~ 67 (243)
T TIGR02315 2 LEVENLSKVYP------------NGKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVE--PSSGSILLEGTDIT 67 (243)
T ss_pred eEEEeeeeecC------------CCcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC--CCccEEEECCEEhh
Confidence 56788888763 12358999999999999999999999999999999999876 45899999998754
Q ss_pred c------ccccceEEEeecCCCCCCCCCHHHHHHHHHHccC-----CCCCCHHHHHHHHHHHHHHcCCCccccccccCCC
Q 000979 684 Q------ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRL-----SPEVDSETRKMFIDEVMELVELNPLRQSLVGLPG 752 (1202)
Q Consensus 684 ~------~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~-----~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~ 752 (1202)
. ..+++.++|++|++.+++.+||+||+.+...... .......+.+++++++++.+++.+..+..
T Consensus 68 ~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~----- 142 (243)
T TIGR02315 68 KLRGKKLRKLRRRIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAYQR----- 142 (243)
T ss_pred hCCHHHHHHHHhheEEEcCCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhcCC-----
Confidence 2 1245679999999999999999999976431100 00011223345678899999998766664
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhcceEEEEec
Q 000979 753 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKR 831 (1202)
Q Consensus 753 ~~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~ 831 (1202)
+..||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||+++ .+.+.||++++|++
T Consensus 143 ~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~-~~~~~~d~v~~l~~ 221 (243)
T TIGR02315 143 ADQLSGGQQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVD-LAKKYADRIVGLKA 221 (243)
T ss_pred cccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCeEEEEEC
Confidence 3579999999999999999999999999999999999999999999998754 899999999986 57789999999985
Q ss_pred CCEEEEEcCCC
Q 000979 832 GGQEIYVGPLG 842 (1202)
Q Consensus 832 gG~~~~~G~~~ 842 (1202)
|+++..|+++
T Consensus 222 -G~i~~~~~~~ 231 (243)
T TIGR02315 222 -GEIVFDGAPS 231 (243)
T ss_pred -CEEEecCCHH
Confidence 8999999864
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates. |
| >COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-38 Score=336.01 Aligned_cols=205 Identities=24% Similarity=0.299 Sum_probs=185.7
Q ss_pred CceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCCc------cc-ccceEEEeecCCC
Q 000979 627 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ------ET-FARISGYCEQNDI 699 (1202)
Q Consensus 627 ~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~------~~-~~~~~~~v~q~~~ 699 (1202)
+-..-++|+|++++.||++.|||-||||||||+++|.++.. +..|+|.++|.++.. +. .++.+++|+|...
T Consensus 39 g~vvGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLie--pt~G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~Fa 116 (386)
T COG4175 39 GLVVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIE--PTRGEILVDGKDIAKLSAAELRELRRKKISMVFQSFA 116 (386)
T ss_pred CcEEeeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCC--CCCceEEECCcchhcCCHHHHHHHHhhhhhhhhhhhc
Confidence 34567999999999999999999999999999999999877 568999999998643 12 3467899999999
Q ss_pred CCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEE
Q 000979 700 HSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFM 779 (1202)
Q Consensus 700 ~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~illl 779 (1202)
++|+.||.||..|+..++ ..+++++++++.++++.+||.+..+.. +++|||||||||.+||||+.+|+|||+
T Consensus 117 LlPhrtVl~Nv~fGLev~---Gv~~~er~~~a~~~l~~VgL~~~~~~y-----p~eLSGGMqQRVGLARAla~~~~IlLM 188 (386)
T COG4175 117 LLPHRTVLENVAFGLEVQ---GVPKAEREERALEALELVGLEGYADKY-----PNELSGGMQQRVGLARALANDPDILLM 188 (386)
T ss_pred cccchhHhhhhhcceeec---CCCHHHHHHHHHHHHHHcCchhhhhcC-----cccccchHHHHHHHHHHHccCCCEEEe
Confidence 999999999999998776 456788999999999999999998887 468999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhcceEEEEecCCEEEEEcCCCc
Q 000979 780 DEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLGR 843 (1202)
Q Consensus 780 DEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G~~~~ 843 (1202)
|||+|+|||--+.++++.|.++.++ ++|||++|||++ |.+.+.|||.+|. +|+++..|+|++
T Consensus 189 DEaFSALDPLIR~~mQdeLl~Lq~~l~KTIvFitHDLd-EAlriG~rIaimk-dG~ivQ~Gtp~e 251 (386)
T COG4175 189 DEAFSALDPLIRTEMQDELLELQAKLKKTIVFITHDLD-EALRIGDRIAIMK-DGEIVQVGTPEE 251 (386)
T ss_pred cCchhhcChHHHHHHHHHHHHHHHHhCCeEEEEecCHH-HHHhccceEEEec-CCeEEEeCCHHH
Confidence 9999999999999999999999755 899999999997 7899999999997 689999999965
|
|
| >PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-38 Score=350.90 Aligned_cols=216 Identities=19% Similarity=0.287 Sum_probs=182.5
Q ss_pred eeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccC
Q 000979 603 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 682 (1202)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 682 (1202)
.++++|+++.|+ ++.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++
T Consensus 7 ~l~~~~l~~~~~-------------~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i 71 (269)
T PRK11831 7 LVDMRGVSFTRG-------------NRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIA--PDHGEILFDGENI 71 (269)
T ss_pred eEEEeCeEEEEC-------------CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEEc
Confidence 478999998873 2458999999999999999999999999999999999876 4589999999875
Q ss_pred Ccc------cccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCC
Q 000979 683 KQE------TFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGL 756 (1202)
Q Consensus 683 ~~~------~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~L 756 (1202)
... ..++.++|++|++.+++.+||.||+.+...... ..+.++.++.++++++.+++.+..++.+ +.|
T Consensus 72 ~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~L 144 (269)
T PRK11831 72 PAMSRSRLYTVRKRMSMLFQSGALFTDMNVFDNVAYPLREHT--QLPAPLLHSTVMMKLEAVGLRGAAKLMP-----SEL 144 (269)
T ss_pred cccChhhHHHHhhcEEEEecccccCCCCCHHHHHHHHHHHcc--CCCHHHHHHHHHHHHHHcCChhhhhCCh-----hhC
Confidence 421 135578999999999999999999987643211 1223334456788999999987776653 579
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhcceEEEEecCCEE
Q 000979 757 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQE 835 (1202)
Q Consensus 757 SgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~ 835 (1202)
|||||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||++. ++.+.+|++++|++ |++
T Consensus 145 SgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~-~~~~~~d~v~~l~~-G~i 222 (269)
T PRK11831 145 SGGMARRAALARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVP-EVLSIADHAYIVAD-KKI 222 (269)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHH-HHHHhhCEEEEEEC-CEE
Confidence 999999999999999999999999999999999999999999998765 899999999986 57788999999984 899
Q ss_pred EEEcCCC
Q 000979 836 IYVGPLG 842 (1202)
Q Consensus 836 ~~~G~~~ 842 (1202)
++.|+++
T Consensus 223 ~~~g~~~ 229 (269)
T PRK11831 223 VAHGSAQ 229 (269)
T ss_pred EEeCCHH
Confidence 9999864
|
|
| >cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-38 Score=346.96 Aligned_cols=214 Identities=27% Similarity=0.382 Sum_probs=180.4
Q ss_pred eEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCC
Q 000979 604 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 683 (1202)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 683 (1202)
++++|++++|+. .+.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+..
T Consensus 1 l~~~~l~~~~~~------------~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~ 66 (242)
T cd03295 1 IEFENVTKRYGG------------GKKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIE--PTSGEIFIDGEDIR 66 (242)
T ss_pred CEEEEEEEEeCC------------cceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECCeEcC
Confidence 357888888741 1358999999999999999999999999999999999876 45899999998754
Q ss_pred c---ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCc--cccccccCCCCCCCCH
Q 000979 684 Q---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP--LRQSLVGLPGVSGLST 758 (1202)
Q Consensus 684 ~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~--~~~~~~~~~~~~~LSg 758 (1202)
. ...++.++|++|++.+++.+||+||+.+..... ....++.++.++++++.+++.+ ..++. ++.|||
T Consensus 67 ~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~l~l~~~~~~~~~-----~~~LS~ 138 (242)
T cd03295 67 EQDPVELRRKIGYVIQQIGLFPHMTVEENIALVPKLL---KWPKEKIRERADELLALVGLDPAEFADRY-----PHELSG 138 (242)
T ss_pred cCChHHhhcceEEEccCccccCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCCcHHHHhcC-----hhhCCH
Confidence 2 234567899999999999999999998865432 1233344556789999999985 55554 357999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhcceEEEEecCCEEEE
Q 000979 759 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIY 837 (1202)
Q Consensus 759 GqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~ 837 (1202)
|||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||+++ ++.+.+|++++|.+ |++++
T Consensus 139 G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~~-~~~~~~d~i~~l~~-G~i~~ 216 (242)
T cd03295 139 GQQQRVGVARALAADPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDID-EAFRLADRIAIMKN-GEIVQ 216 (242)
T ss_pred HHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHH-HHHHhCCEEEEEEC-CEEEE
Confidence 9999999999999999999999999999999999999999999765 899999999986 57789999999985 89999
Q ss_pred EcCC
Q 000979 838 VGPL 841 (1202)
Q Consensus 838 ~G~~ 841 (1202)
.|++
T Consensus 217 ~~~~ 220 (242)
T cd03295 217 VGTP 220 (242)
T ss_pred ecCH
Confidence 9885
|
ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-38 Score=355.52 Aligned_cols=218 Identities=26% Similarity=0.294 Sum_probs=181.0
Q ss_pred eEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCC
Q 000979 604 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 683 (1202)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 683 (1202)
++++|++++|+... ...+++|+|||++|++||+++|+||||||||||+++|+|... +.+|+|.++|.++.
T Consensus 3 l~~~~l~~~y~~~~--------~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i~ 72 (290)
T PRK13634 3 ITFQKVEHRYQYKT--------PFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQ--PTSGTVTIGERVIT 72 (290)
T ss_pred EEEEEEEEEECCCC--------cccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC--CCCcEEEECCEECc
Confidence 78999999985210 012458999999999999999999999999999999999876 45899999998763
Q ss_pred c-------ccccceEEEeecCC--CCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCCCC
Q 000979 684 Q-------ETFARISGYCEQND--IHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELN-PLRQSLVGLPGV 753 (1202)
Q Consensus 684 ~-------~~~~~~~~~v~q~~--~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-~~~~~~~~~~~~ 753 (1202)
. ...++.+|||+|++ .++ ..||+||+.|+.... ..+.++.+++++++++.++|. +..++. +
T Consensus 73 ~~~~~~~~~~~~~~ig~v~q~~~~~l~-~~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~ 143 (290)
T PRK13634 73 AGKKNKKLKPLRKKVGIVFQFPEHQLF-EETVEKDICFGPMNF---GVSEEDAKQKAREMIELVGLPEELLARS-----P 143 (290)
T ss_pred cccccchHHHHHhhEEEEeeCchhhhh-hhhHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCCChhhhhCC-----c
Confidence 1 23456799999986 344 479999999875422 223444456688999999996 555654 3
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhcceEEEEecC
Q 000979 754 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRG 832 (1202)
Q Consensus 754 ~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~g 832 (1202)
+.||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++ |.|||++||+++ ++.+.+||+++|+ +
T Consensus 144 ~~LSgGq~qrv~lAraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~~-~~~~~~drv~~l~-~ 221 (290)
T PRK13634 144 FELSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSME-DAARYADQIVVMH-K 221 (290)
T ss_pred ccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEE-C
Confidence 579999999999999999999999999999999999999999999999765 899999999986 5788999999998 5
Q ss_pred CEEEEEcCCC
Q 000979 833 GQEIYVGPLG 842 (1202)
Q Consensus 833 G~~~~~G~~~ 842 (1202)
|++++.|+++
T Consensus 222 G~i~~~g~~~ 231 (290)
T PRK13634 222 GTVFLQGTPR 231 (290)
T ss_pred CEEEEECCHH
Confidence 8999999863
|
|
| >COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-38 Score=315.20 Aligned_cols=217 Identities=27% Similarity=0.391 Sum_probs=182.7
Q ss_pred eEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCC
Q 000979 604 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 683 (1202)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 683 (1202)
++.+|++|+.. ++.+|++||++++|||++||+||||||||||||.|+|... +.+|++.+||.+.+
T Consensus 2 i~a~nls~~~~-------------Gr~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~--p~~G~v~~~g~~l~ 66 (259)
T COG4559 2 IRAENLSYSLA-------------GRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELS--PDSGEVTLNGVPLN 66 (259)
T ss_pred eeeeeeEEEee-------------cceeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccC--CCCCeEeeCCcChh
Confidence 56789998763 4678999999999999999999999999999999999876 34899999999865
Q ss_pred c---ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHH
Q 000979 684 Q---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQ 760 (1202)
Q Consensus 684 ~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGq 760 (1202)
. ....++.+.+||+..+-...||+|-+.++..-... ....++..+.++++++..++.+.+.+. ...|||||
T Consensus 67 ~~~~~~lA~~raVlpQ~s~laFpFtv~eVV~mGr~p~~~-g~~~~e~~~i~~~ala~~d~~~la~R~-----y~~LSGGE 140 (259)
T COG4559 67 SWPPEELARHRAVLPQNSSLAFPFTVQEVVQMGRIPHRS-GREPEEDERIAAQALAATDLSGLAGRD-----YRTLSGGE 140 (259)
T ss_pred hCCHHHHHHHhhhcccCcccccceEHHHHHHhccccccc-CCCchhhHHHHHHHHHHcChhhhhccc-----hhhcCchH
Confidence 4 33456678999998876668999999988543211 112223445578899999999887765 35799999
Q ss_pred HHHHHHHHHHhh------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCCE
Q 000979 761 RKRLTIAVELVA------NPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQ 834 (1202)
Q Consensus 761 rqRv~ia~aL~~------~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~ 834 (1202)
||||.+||.|+. ++++||||||||+||...+..++++.|+++++|..|+++.||++. ...++||+++|++ ||
T Consensus 141 qQRVqlARvLaQl~~~v~~~r~L~LDEPtsaLDi~HQ~~tl~laR~la~~g~~V~~VLHDLNL-AA~YaDrivll~~-Gr 218 (259)
T COG4559 141 QQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLAREGGAVLAVLHDLNL-AAQYADRIVLLHQ-GR 218 (259)
T ss_pred HHHHHHHHHHHHccCCCCCCceEEecCCccccchHHHHHHHHHHHHHHhcCCcEEEEEccchH-HHHhhheeeeeeC-Ce
Confidence 999999999986 456999999999999999999999999999999999999999985 6789999999985 89
Q ss_pred EEEEcCCCc
Q 000979 835 EIYVGPLGR 843 (1202)
Q Consensus 835 ~~~~G~~~~ 843 (1202)
++..|+|.+
T Consensus 219 v~a~g~p~~ 227 (259)
T COG4559 219 VIASGSPQD 227 (259)
T ss_pred EeecCCHHH
Confidence 999999965
|
|
| >PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-38 Score=356.22 Aligned_cols=230 Identities=21% Similarity=0.232 Sum_probs=186.3
Q ss_pred eeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccC
Q 000979 603 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 682 (1202)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 682 (1202)
-++++|++++|+............+...+|+||||+|++||+++|+|+||||||||+++|+|... +.+|+|.++|.++
T Consensus 8 ~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~--p~~G~I~~~G~~i 85 (331)
T PRK15079 8 LLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVK--ATDGEVAWLGKDL 85 (331)
T ss_pred eEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCC--CCCcEEEECCEEC
Confidence 48899999988632110000001123579999999999999999999999999999999999876 4589999999876
Q ss_pred Ccc------cccceEEEeecCC--CCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCCCC
Q 000979 683 KQE------TFARISGYCEQND--IHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELN-PLRQSLVGLPGV 753 (1202)
Q Consensus 683 ~~~------~~~~~~~~v~q~~--~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-~~~~~~~~~~~~ 753 (1202)
... ..++.++||+|++ .++|.+||.||+.+...... ...+.++.+++++++++.+++. +..++. +
T Consensus 86 ~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~-~~~~~~~~~~~~~~~l~~vgl~~~~~~~~-----p 159 (331)
T PRK15079 86 LGMKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYH-PKLSRQEVKDRVKAMMLKVGLLPNLINRY-----P 159 (331)
T ss_pred CcCCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHHcCCChHHhcCC-----c
Confidence 431 2456799999997 58889999999988654321 1234455566788999999994 344543 4
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhcceEEEEecC
Q 000979 754 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRG 832 (1202)
Q Consensus 754 ~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~g 832 (1202)
++|||||||||+|||||+.+|++|++||||+|||+.++..+++.|+++.++ |.|+|++|||++ .+.+++||+++|.+
T Consensus 160 ~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTHdl~-~~~~~~dri~vl~~- 237 (331)
T PRK15079 160 HEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLA-VVKHISDRVLVMYL- 237 (331)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEEC-
Confidence 679999999999999999999999999999999999999999999999765 899999999986 57788999999985
Q ss_pred CEEEEEcCCC
Q 000979 833 GQEIYVGPLG 842 (1202)
Q Consensus 833 G~~~~~G~~~ 842 (1202)
|+++..|+++
T Consensus 238 G~ive~g~~~ 247 (331)
T PRK15079 238 GHAVELGTYD 247 (331)
T ss_pred CEEEEEcCHH
Confidence 8999999864
|
|
| >PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-38 Score=356.50 Aligned_cols=219 Identities=25% Similarity=0.334 Sum_probs=181.3
Q ss_pred eeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccC
Q 000979 603 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 682 (1202)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 682 (1202)
.++++|+++.|+... ...+.+|+|||+++++||++||+||||||||||+++|+|..+ +.+|+|.++|.+.
T Consensus 21 ~l~~~nl~~~y~~~~--------~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~--p~~G~I~i~g~~~ 90 (320)
T PRK13631 21 ILRVKNLYCVFDEKQ--------ENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIK--SKYGTIQVGDIYI 90 (320)
T ss_pred eEEEEeEEEEeCCCC--------cccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCCeEEECCEEc
Confidence 489999999985210 112358999999999999999999999999999999999876 4589999999765
Q ss_pred Cc-------------------ccccceEEEeecCC--CCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCC
Q 000979 683 KQ-------------------ETFARISGYCEQND--IHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELN 741 (1202)
Q Consensus 683 ~~-------------------~~~~~~~~~v~q~~--~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~ 741 (1202)
.. ...++.++||+|++ .+++ .||+||+.|+.... ..+.++..++++++++.+++.
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~-~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~gL~ 166 (320)
T PRK13631 91 GDKKNNHELITNPYSKKIKNFKELRRRVSMVFQFPEYQLFK-DTIEKDIMFGPVAL---GVKKSEAKKLAKFYLNKMGLD 166 (320)
T ss_pred ccccccccccccccccccchHHHHHhcEEEEEECchhcccc-chHHHHHHhhHHhc---CCCHHHHHHHHHHHHHHcCCC
Confidence 32 13467899999987 4555 59999998875321 223444455688999999996
Q ss_pred -ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHH
Q 000979 742 -PLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIF 820 (1202)
Q Consensus 742 -~~~~~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~ 820 (1202)
+..++. +..||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||+++ .+.
T Consensus 167 ~~~~~~~-----~~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~g~TiiivtHd~~-~~~ 240 (320)
T PRK13631 167 DSYLERS-----PFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTME-HVL 240 (320)
T ss_pred hhHhcCC-----cccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHH
Confidence 455543 3579999999999999999999999999999999999999999999998777999999999986 477
Q ss_pred HhcceEEEEecCCEEEEEcCCC
Q 000979 821 EAFDELFLMKRGGQEIYVGPLG 842 (1202)
Q Consensus 821 ~~~d~v~~l~~gG~~~~~G~~~ 842 (1202)
+.+||+++|.+ |+++..|+++
T Consensus 241 ~~adri~vl~~-G~i~~~g~~~ 261 (320)
T PRK13631 241 EVADEVIVMDK-GKILKTGTPY 261 (320)
T ss_pred HhCCEEEEEEC-CEEEEeCCHH
Confidence 89999999985 8999999864
|
|
| >PRK10908 cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-38 Score=339.91 Aligned_cols=209 Identities=23% Similarity=0.307 Sum_probs=175.9
Q ss_pred eEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCC
Q 000979 604 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 683 (1202)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 683 (1202)
++++|+++.|+ +++.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.
T Consensus 2 l~~~~l~~~~~------------~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~i~ 67 (222)
T PRK10908 2 IRFEHVSKAYL------------GGRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIER--PSAGKIWFSGHDIT 67 (222)
T ss_pred EEEEeeEEEec------------CCCeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEcc
Confidence 57889998873 12358999999999999999999999999999999999876 45899999998754
Q ss_pred cc------cccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCC
Q 000979 684 QE------TFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLS 757 (1202)
Q Consensus 684 ~~------~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LS 757 (1202)
.. .+++.++|++|++.+++.+|++||+.+....+ ....++.++.++++++.+++.+..++. ++.||
T Consensus 68 ~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS 139 (222)
T PRK10908 68 RLKNREVPFLRRQIGMIFQDHHLLMDRTVYDNVAIPLIIA---GASGDDIRRRVSAALDKVGLLDKAKNF-----PIQLS 139 (222)
T ss_pred cCChhHHHHHHhheEEEecCccccccccHHHHHHhHHHhc---CCCHHHHHHHHHHHHHHcCChhhhhCC-----chhCC
Confidence 21 14567999999998888999999998865432 123334445678899999998766654 35799
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCCEEE
Q 000979 758 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEI 836 (1202)
Q Consensus 758 gGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~ 836 (1202)
||||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++|.|+|++||+++ ++.+.+|++++|++ |+++
T Consensus 140 ~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-G~i~ 216 (222)
T PRK10908 140 GGEQQRVGIARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDIG-LISRRSYRMLTLSD-GHLH 216 (222)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEc
Confidence 99999999999999999999999999999999999999999999777899999999986 57788999999985 6763
|
|
| >cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-38 Score=338.49 Aligned_cols=209 Identities=33% Similarity=0.481 Sum_probs=176.2
Q ss_pred eEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCC
Q 000979 604 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 683 (1202)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 683 (1202)
++++|+++.|+ ++.+|+|+||++++| +++|+||||||||||+++|+|..+ +.+|+|.++|.++.
T Consensus 1 i~~~~~~~~~~-------------~~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~ 64 (211)
T cd03264 1 LQLENLTKRYG-------------KKRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTP--PSSGTIRIDGQDVL 64 (211)
T ss_pred CEEEEEEEEEC-------------CEEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCC--CCccEEEECCCccc
Confidence 35788888773 235899999999999 999999999999999999999876 45899999998754
Q ss_pred c--ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHH
Q 000979 684 Q--ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQR 761 (1202)
Q Consensus 684 ~--~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqr 761 (1202)
. ...++.++|++|++.+++.+||+||+.+....+. ...++.++.++++++.+++.+..++.+ ..||||||
T Consensus 65 ~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~ 136 (211)
T cd03264 65 KQPQKLRRRIGYLPQEFGVYPNFTVREFLDYIAWLKG---IPSKEVKARVDEVLELVNLGDRAKKKI-----GSLSGGMR 136 (211)
T ss_pred cchHHHHhheEEecCCCcccccCCHHHHHHHHHHHhC---CCHHHHHHHHHHHHHHCCCHHHHhCch-----hhCCHHHH
Confidence 3 2345678999999999999999999988654431 222333456788999999987766653 57999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCCEEEEEc
Q 000979 762 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVG 839 (1202)
Q Consensus 762 qRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G 839 (1202)
||++|||||+.+|++|+|||||+|||+.++..+.+.|+++++ +.|||++||+++ .+.+.+||+++|++ |+++..|
T Consensus 137 qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~vsH~~~-~~~~~~d~i~~l~~-g~i~~~g 211 (211)
T cd03264 137 RRVGIAQALVGDPSILIVDEPTAGLDPEERIRFRNLLSELGE-DRIVILSTHIVE-DVESLCNQVAVLNK-GKLVFEG 211 (211)
T ss_pred HHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhC-CCEEEEEcCCHH-HHHHhCCEEEEEEC-CEEEecC
Confidence 999999999999999999999999999999999999999875 599999999986 46778999999985 7888765
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-38 Score=346.06 Aligned_cols=215 Identities=27% Similarity=0.373 Sum_probs=182.0
Q ss_pred eEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCC
Q 000979 604 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 683 (1202)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 683 (1202)
++++|+++.|+ ++.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.
T Consensus 4 l~~~~l~~~~~-------------~~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~ 68 (241)
T PRK10895 4 LTAKNLAKAYK-------------GRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVP--RDAGNIIIDDEDIS 68 (241)
T ss_pred EEEeCcEEEeC-------------CEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEECC
Confidence 67889998873 2468999999999999999999999999999999999876 45899999998764
Q ss_pred cc----cccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHH
Q 000979 684 QE----TFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTE 759 (1202)
Q Consensus 684 ~~----~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgG 759 (1202)
.. ..++.++|++|++.+++.+||+||+.+...... ..+.++.+.+++++++.+++.+..+.. .+.||||
T Consensus 69 ~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G 141 (241)
T PRK10895 69 LLPLHARARRGIGYLPQEASIFRRLSVYDNLMAVLQIRD--DLSAEQREDRANELMEEFHIEHLRDSM-----GQSLSGG 141 (241)
T ss_pred CCCHHHHHHhCeEEeccCCcccccCcHHHHHhhhhhccc--ccCHHHHHHHHHHHHHHcCCHHHhhcc-----hhhCCHH
Confidence 31 134679999999999999999999987643321 122334455688999999998765554 3579999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCCEEEEEc
Q 000979 760 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVG 839 (1202)
Q Consensus 760 qrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G 839 (1202)
||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++|+|+|++||+++ ++.+.+|++++|++ |++++.|
T Consensus 142 ~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~-~~~~~~d~v~~l~~-G~i~~~~ 219 (241)
T PRK10895 142 ERRRVEIARALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNVR-ETLAVCERAYIVSQ-GHLIAHG 219 (241)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEEcCHH-HHHHhcCEEEEEeC-CeEEeeC
Confidence 999999999999999999999999999999999999999998777999999999985 57889999999985 8999999
Q ss_pred CCC
Q 000979 840 PLG 842 (1202)
Q Consensus 840 ~~~ 842 (1202)
+++
T Consensus 220 ~~~ 222 (241)
T PRK10895 220 TPT 222 (241)
T ss_pred CHH
Confidence 864
|
|
| >cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-38 Score=339.12 Aligned_cols=207 Identities=24% Similarity=0.347 Sum_probs=174.5
Q ss_pred eEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCC
Q 000979 604 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 683 (1202)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 683 (1202)
++++|++++|+ ++.+|+++||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+..
T Consensus 1 l~~~~l~~~~~-------------~~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~ 65 (213)
T cd03262 1 IEIKNLHKSFG-------------DFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEE--PDSGTIIIDGLKLT 65 (213)
T ss_pred CEEEEEEEEEC-------------CeEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEECC
Confidence 35788888874 2458999999999999999999999999999999999876 45899999998763
Q ss_pred c-----ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCH
Q 000979 684 Q-----ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLST 758 (1202)
Q Consensus 684 ~-----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSg 758 (1202)
. ...++.++|++|++.+++.+|++||+.+...... ....++.+++++++++.+++.+..++. ++.|||
T Consensus 66 ~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~ 138 (213)
T cd03262 66 DDKKNINELRQKVGMVFQQFNLFPHLTVLENITLAPIKVK--GMSKAEAEERALELLEKVGLADKADAY-----PAQLSG 138 (213)
T ss_pred ccchhHHHHHhcceEEecccccCCCCcHHHHHHhHHHHhc--CCCHHHHHHHHHHHHHHcCCHhHhhhC-----ccccCH
Confidence 2 2345789999999999999999999988642111 122334445678899999998766665 357999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCCE
Q 000979 759 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQ 834 (1202)
Q Consensus 759 GqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~ 834 (1202)
|||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||+++ ++.+.+|++++|++ |+
T Consensus 139 G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tvi~~sh~~~-~~~~~~d~i~~l~~-g~ 212 (213)
T cd03262 139 GQQQRVAIARALAMNPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEMG-FAREVADRVIFMDD-GR 212 (213)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEeC-Cc
Confidence 9999999999999999999999999999999999999999999877899999999986 57789999999985 55
|
Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM |
| >TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-37 Score=344.95 Aligned_cols=214 Identities=23% Similarity=0.311 Sum_probs=178.6
Q ss_pred eEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCc---eEEEEEEEcCc
Q 000979 604 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG---YITGNITISGY 680 (1202)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~---~~~G~i~~~g~ 680 (1202)
++++|++++|+ +..+|+|+||++++||+++|+||||||||||+++|+|..++. +.+|+|.++|.
T Consensus 2 l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~ 68 (247)
T TIGR00972 2 IEIENLNLFYG-------------EKEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQ 68 (247)
T ss_pred EEEEEEEEEEC-------------CeeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCE
Confidence 57889998874 235899999999999999999999999999999999986532 12799999998
Q ss_pred cCCc-----ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCC----ccccccccCC
Q 000979 681 PKKQ-----ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELN----PLRQSLVGLP 751 (1202)
Q Consensus 681 ~~~~-----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~----~~~~~~~~~~ 751 (1202)
+... ...++.++|++|++.+++ +|++||+.+....+. ..+.++.++.++++++.+++. +..++.
T Consensus 69 ~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~---- 141 (247)
T TIGR00972 69 DIYDKKIDVVELRRRVGMVFQKPNPFP-MSIYDNIAYGPRLHG--IKDKKELDEIVEESLKKAALWDEVKDRLHDS---- 141 (247)
T ss_pred EccccccchHHHHhheEEEecCcccCC-CCHHHHHHhHHHhcC--CCCHHHHHHHHHHHHHHcCCCcchhhHhhCC----
Confidence 7642 234567999999998888 999999998754331 112334445678899999997 444443
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEec
Q 000979 752 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKR 831 (1202)
Q Consensus 752 ~~~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~ 831 (1202)
++.||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++++ ++|+|++||+++ ++.+.+|++++|++
T Consensus 142 -~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivsH~~~-~~~~~~d~i~~l~~ 218 (247)
T TIGR00972 142 -ALGLSGGQQQRLCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKK-KYTIVIVTHNMQ-QAARISDRTAFFYD 218 (247)
T ss_pred -cccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-cCeEEEEecCHH-HHHHhCCEEEEEEC
Confidence 357999999999999999999999999999999999999999999999876 489999999986 57789999999985
Q ss_pred CCEEEEEcCC
Q 000979 832 GGQEIYVGPL 841 (1202)
Q Consensus 832 gG~~~~~G~~ 841 (1202)
|+++..|++
T Consensus 219 -G~i~~~~~~ 227 (247)
T TIGR00972 219 -GELVEYGPT 227 (247)
T ss_pred -CEEEEeCCH
Confidence 899999986
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters. |
| >COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-38 Score=303.47 Aligned_cols=212 Identities=25% Similarity=0.358 Sum_probs=178.3
Q ss_pred eEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCC
Q 000979 604 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 683 (1202)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 683 (1202)
++.++++..+. ...+...||++|++.|++||.+||+|||||||||||-+++|... +.+|+|.+.|++..
T Consensus 7 i~~~~l~ktvg---------~~~~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~--~ssGeV~l~G~~L~ 75 (228)
T COG4181 7 IEVHHLSKTVG---------QGEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDD--PSSGEVRLLGQPLH 75 (228)
T ss_pred eehhhhhhhhc---------CCCcceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCC--CCCceEEEcCcchh
Confidence 55666665543 12456789999999999999999999999999999999999877 45899999998864
Q ss_pred c-------ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCC
Q 000979 684 Q-------ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGL 756 (1202)
Q Consensus 684 ~-------~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~L 756 (1202)
. .-..+++|+|+|...+.|++|..||+...+.++.... .+......+.++.+||.+..+.. +.+|
T Consensus 76 ~ldEd~rA~~R~~~vGfVFQSF~Lip~ltAlENV~lPleL~ge~~---~~~~~~A~~lL~~vGLg~Rl~Hy-----P~qL 147 (228)
T COG4181 76 KLDEDARAALRARHVGFVFQSFHLIPNLTALENVALPLELRGESS---ADSRAGAKALLEAVGLGKRLTHY-----PAQL 147 (228)
T ss_pred hcCHHHHHHhhccceeEEEEeeeccccchhhhhccchhhhcCCcc---ccHHHHHHHHHHHhCcccccccC-----cccc
Confidence 3 1234689999999999999999999999888775322 22234567899999998766554 3589
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCCHHHHHhcceEEEEecCCEE
Q 000979 757 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKRGGQE 835 (1202)
Q Consensus 757 SgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~ 835 (1202)
||||+|||+||||++..|+|||.||||-+||..+...|.++|-.+.+ .|.|.|++||||. +...|||.+-|.. |++
T Consensus 148 SGGEQQRVAiARAfa~~P~vLfADEPTGNLD~~Tg~~iaDLlF~lnre~G~TlVlVTHD~~--LA~Rc~R~~r~~~-G~l 224 (228)
T COG4181 148 SGGEQQRVALARAFAGRPDVLFADEPTGNLDRATGDKIADLLFALNRERGTTLVLVTHDPQ--LAARCDRQLRLRS-GRL 224 (228)
T ss_pred CchHHHHHHHHHHhcCCCCEEeccCCCCCcchhHHHHHHHHHHHHhhhcCceEEEEeCCHH--HHHhhhheeeeec-cee
Confidence 99999999999999999999999999999999999999999988865 4999999999985 7889999999985 787
Q ss_pred EE
Q 000979 836 IY 837 (1202)
Q Consensus 836 ~~ 837 (1202)
+.
T Consensus 225 ~~ 226 (228)
T COG4181 225 VE 226 (228)
T ss_pred cc
Confidence 53
|
|
| >PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-38 Score=351.51 Aligned_cols=217 Identities=24% Similarity=0.311 Sum_probs=182.7
Q ss_pred eeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccC
Q 000979 603 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 682 (1202)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 682 (1202)
.++++|++++|+.. +.+.+|+|+|++|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+.
T Consensus 4 ~l~~~~l~~~~~~~----------~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i 71 (279)
T PRK13650 4 IIEVKNLTFKYKED----------QEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLE--AESGQIIIDGDLL 71 (279)
T ss_pred eEEEEeEEEEcCCC----------CcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCEEC
Confidence 37899999988411 12358999999999999999999999999999999999876 4589999999876
Q ss_pred Cc---ccccceEEEeecCC-CCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCH
Q 000979 683 KQ---ETFARISGYCEQND-IHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLST 758 (1202)
Q Consensus 683 ~~---~~~~~~~~~v~q~~-~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSg 758 (1202)
.. ...++.++|++|++ ..++..||+||+.|..... ..+.++.+++++++++.+||.+..+..+ ..|||
T Consensus 72 ~~~~~~~~~~~i~~v~q~~~~~~~~~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~LSg 143 (279)
T PRK13650 72 TEENVWDIRHKIGMVFQNPDNQFVGATVEDDVAFGLENK---GIPHEEMKERVNEALELVGMQDFKEREP-----ARLSG 143 (279)
T ss_pred CcCcHHHHHhhceEEEcChHHhcccccHHHHHHhhHHhC---CCCHHHHHHHHHHHHHHCCCHhHhhCCc-----ccCCH
Confidence 43 23456799999997 3667789999999875432 2334445567889999999987776653 57999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhcceEEEEecCCEEEE
Q 000979 759 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIY 837 (1202)
Q Consensus 759 GqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~ 837 (1202)
|||||++|||||+.+|++|+|||||+|||+.++..+++.|++++++ |+|||++||+++ ++ ..|||+++|+ +|+++.
T Consensus 144 Gq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~-~~-~~~dri~~l~-~G~i~~ 220 (279)
T PRK13650 144 GQKQRVAIAGAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLD-EV-ALSDRVLVMK-NGQVES 220 (279)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HH-HhCCEEEEEE-CCEEEE
Confidence 9999999999999999999999999999999999999999999865 999999999986 45 6899999998 489999
Q ss_pred EcCCC
Q 000979 838 VGPLG 842 (1202)
Q Consensus 838 ~G~~~ 842 (1202)
.|+++
T Consensus 221 ~g~~~ 225 (279)
T PRK13650 221 TSTPR 225 (279)
T ss_pred ECCHH
Confidence 99863
|
|
| >PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-37 Score=345.95 Aligned_cols=215 Identities=20% Similarity=0.257 Sum_probs=181.7
Q ss_pred eeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccC
Q 000979 603 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 682 (1202)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 682 (1202)
.++++|+++.|+ ++.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++
T Consensus 5 ~l~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~~ 69 (257)
T PRK10619 5 KLNVIDLHKRYG-------------EHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEK--PSEGSIVVNGQTI 69 (257)
T ss_pred cEEEeeeEEEEC-------------CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEECCEEc
Confidence 488999999874 2458999999999999999999999999999999999876 4579999999865
Q ss_pred Cc----------------ccccceEEEeecCCCCCCCCCHHHHHHHHHH-ccCCCCCCHHHHHHHHHHHHHHcCCCccc-
Q 000979 683 KQ----------------ETFARISGYCEQNDIHSPFVTIYESLLFSAW-LRLSPEVDSETRKMFIDEVMELVELNPLR- 744 (1202)
Q Consensus 683 ~~----------------~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~-~~~~~~~~~~~~~~~~~~~l~~l~l~~~~- 744 (1202)
.. ..+++.++|++|++.+++.+||+||+.++.. .. .....+.++++.++++.+|+.+..
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~ 146 (257)
T PRK10619 70 NLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVL---GLSKQEARERAVKYLAKVGIDERAQ 146 (257)
T ss_pred ccccccccccccccchHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHHcCCChhhh
Confidence 31 1335679999999999999999999987542 21 123344456678999999997653
Q ss_pred cccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcc
Q 000979 745 QSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFD 824 (1202)
Q Consensus 745 ~~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d 824 (1202)
+.. .+.||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||+++ ++.+.||
T Consensus 147 ~~~-----~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~~~-~~~~~~d 220 (257)
T PRK10619 147 GKY-----PVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMG-FARHVSS 220 (257)
T ss_pred hCC-----cccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcC
Confidence 443 3579999999999999999999999999999999999999999999999877999999999986 5777899
Q ss_pred eEEEEecCCEEEEEcCCC
Q 000979 825 ELFLMKRGGQEIYVGPLG 842 (1202)
Q Consensus 825 ~v~~l~~gG~~~~~G~~~ 842 (1202)
|+++|++ |++++.|+++
T Consensus 221 ~i~~l~~-G~i~~~~~~~ 237 (257)
T PRK10619 221 HVIFLHQ-GKIEEEGAPE 237 (257)
T ss_pred EEEEEEC-CEEEEeCCHH
Confidence 9999985 8999998863
|
|
| >PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-37 Score=344.33 Aligned_cols=206 Identities=21% Similarity=0.278 Sum_probs=176.9
Q ss_pred eeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccC
Q 000979 603 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 682 (1202)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 682 (1202)
.++++|++++|. ++.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+.
T Consensus 12 ~l~i~~l~~~~~-------------~~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~--p~~G~i~~~g~~~ 76 (257)
T PRK11247 12 PLLLNAVSKRYG-------------ERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLET--PSAGELLAGTAPL 76 (257)
T ss_pred cEEEEEEEEEEC-------------CcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCeEEEECCEEH
Confidence 488999999884 2358999999999999999999999999999999999876 4589999998765
Q ss_pred CcccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHH
Q 000979 683 KQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRK 762 (1202)
Q Consensus 683 ~~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrq 762 (1202)
. ..++.++|++|++.+++.+||+||+.+... . ..+++++++++.+++.+..+.. +..|||||||
T Consensus 77 ~--~~~~~i~~v~q~~~l~~~~tv~enl~~~~~-----~----~~~~~~~~~l~~~gl~~~~~~~-----~~~LSgGqkq 140 (257)
T PRK11247 77 A--EAREDTRLMFQDARLLPWKKVIDNVGLGLK-----G----QWRDAALQALAAVGLADRANEW-----PAALSGGQKQ 140 (257)
T ss_pred H--HhhCceEEEecCccCCCCCcHHHHHHhccc-----c----hHHHHHHHHHHHcCChhHhcCC-----hhhCCHHHHH
Confidence 3 345679999999999998999999987521 0 1134578899999998766665 3579999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCCHHHHHhcceEEEEecCCEEEEEcCC
Q 000979 763 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPL 841 (1202)
Q Consensus 763 Rv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G~~ 841 (1202)
|++|||+|+.+|++|+|||||+|||+.++..+.+.|+++.+ .|+|||++||+++ .+.+.+|++++|++ |++++.|+.
T Consensus 141 rl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tviivsHd~~-~~~~~~d~i~~l~~-G~i~~~~~~ 218 (257)
T PRK11247 141 RVALARALIHRPGLLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDVS-EAVAMADRVLLIEE-GKIGLDLTV 218 (257)
T ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEeeccc
Confidence 99999999999999999999999999999999999999865 4899999999986 57788999999985 899988875
|
|
| >PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-38 Score=351.29 Aligned_cols=216 Identities=26% Similarity=0.390 Sum_probs=182.2
Q ss_pred eeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccC
Q 000979 603 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 682 (1202)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 682 (1202)
.++++|+++.|+ +++.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+.
T Consensus 5 ~l~~~~l~~~~~------------~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~--p~~G~i~i~g~~~ 70 (283)
T PRK13636 5 ILKVEELNYNYS------------DGTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILK--PSSGRILFDGKPI 70 (283)
T ss_pred eEEEEeEEEEeC------------CCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCccEEEECCEEC
Confidence 488999999884 12358999999999999999999999999999999999876 4589999999876
Q ss_pred Cc-----ccccceEEEeecCCC-CCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCC
Q 000979 683 KQ-----ETFARISGYCEQNDI-HSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGL 756 (1202)
Q Consensus 683 ~~-----~~~~~~~~~v~q~~~-~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~L 756 (1202)
.. ..+++.++|++|++. .+...||+||+.+..... ..+.++.+++++++++.+++.+..++. .+.|
T Consensus 71 ~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~-----~~~L 142 (283)
T PRK13636 71 DYSRKGLMKLRESVGMVFQDPDNQLFSASVYQDVSFGAVNL---KLPEDEVRKRVDNALKRTGIEHLKDKP-----THCL 142 (283)
T ss_pred CCCcchHHHHHhhEEEEecCcchhhccccHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHCCChhhhhCC-----cccC
Confidence 31 234567999999874 334579999998865322 223444456688999999998877765 3579
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhcceEEEEecCCEE
Q 000979 757 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQE 835 (1202)
Q Consensus 757 SgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~ 835 (1202)
|||||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||+++ ++.+.|||+++|++ |++
T Consensus 143 S~G~~qrl~laraL~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~~-~~~~~~dri~~l~~-G~i 220 (283)
T PRK13636 143 SFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDID-IVPLYCDNVFVMKE-GRV 220 (283)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCEEEEEEC-CEE
Confidence 999999999999999999999999999999999999999999999765 899999999986 46778999999985 799
Q ss_pred EEEcCCC
Q 000979 836 IYVGPLG 842 (1202)
Q Consensus 836 ~~~G~~~ 842 (1202)
++.|+++
T Consensus 221 ~~~g~~~ 227 (283)
T PRK13636 221 ILQGNPK 227 (283)
T ss_pred EEeCCHH
Confidence 9999874
|
|
| >TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-37 Score=340.59 Aligned_cols=212 Identities=26% Similarity=0.389 Sum_probs=178.2
Q ss_pred eEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCC
Q 000979 604 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 683 (1202)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 683 (1202)
++++|++++|+ ++.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.
T Consensus 2 l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--p~~G~i~~~g~~i~ 66 (236)
T TIGR03864 2 LEVAGLSFAYG-------------ARRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYV--AQEGQISVAGHDLR 66 (236)
T ss_pred EEEEeeEEEEC-------------CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC--CCceEEEECCEEcc
Confidence 56789988873 2458999999999999999999999999999999999876 45899999998754
Q ss_pred c--ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHH
Q 000979 684 Q--ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQR 761 (1202)
Q Consensus 684 ~--~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqr 761 (1202)
. ...++.++|++|++.+++.+|++||+.+....+ ....++.++.++++++.+|+.+..++.+ ..||||||
T Consensus 67 ~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LS~G~~ 138 (236)
T TIGR03864 67 RAPRAALARLGVVFQQPTLDLDLSVRQNLRYHAALH---GLSRAEARERIAALLARLGLAERADDKV-----RELNGGHR 138 (236)
T ss_pred cCChhhhhhEEEeCCCCCCcccCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCChhhhcCCh-----hhCCHHHH
Confidence 2 122357899999998888999999998765432 1223334456788999999987766653 47999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCCHHHHHhcceEEEEecCCEEEEEcC
Q 000979 762 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGP 840 (1202)
Q Consensus 762 qRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G~ 840 (1202)
||++|||||+.+|++|+|||||+|||+.++..+.+.|+++++ +|+|+|++||+++ ++ +.+|++++|.+ |+++..|+
T Consensus 139 qrl~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~-~~~d~i~~l~~-G~i~~~~~ 215 (236)
T TIGR03864 139 RRVEIARALLHRPALLLLDEPTVGLDPASRAAIVAHVRALCRDQGLSVLWATHLVD-EI-EADDRLVVLHR-GRVLADGA 215 (236)
T ss_pred HHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecChh-hH-hhCCEEEEEeC-CeEEEeCC
Confidence 999999999999999999999999999999999999999875 5899999999986 35 45999999985 89999887
Q ss_pred C
Q 000979 841 L 841 (1202)
Q Consensus 841 ~ 841 (1202)
+
T Consensus 216 ~ 216 (236)
T TIGR03864 216 A 216 (236)
T ss_pred H
Confidence 5
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification. |
| >cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-37 Score=341.05 Aligned_cols=217 Identities=24% Similarity=0.279 Sum_probs=173.7
Q ss_pred eEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCC
Q 000979 604 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 683 (1202)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 683 (1202)
++++||+++|+.. .....+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.
T Consensus 2 l~~~~v~~~~~~~---------~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~ 70 (228)
T cd03257 2 LEVKNLSVSFPTG---------GGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLK--PTSGSIIFDGKDLL 70 (228)
T ss_pred eEEEeeeEeccCC---------CcceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEEcc
Confidence 5788999887411 011358999999999999999999999999999999999876 45899999998764
Q ss_pred c------ccccceEEEeecCC--CCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCCCCC
Q 000979 684 Q------ETFARISGYCEQND--IHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELN-PLRQSLVGLPGVS 754 (1202)
Q Consensus 684 ~------~~~~~~~~~v~q~~--~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-~~~~~~~~~~~~~ 754 (1202)
. ..+++.++|++|++ .+++.+||+||+.+....... ....+..+..++++++.+++. +..+.. +.
T Consensus 71 ~~~~~~~~~~~~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~ 144 (228)
T cd03257 71 KLSRRLRKIRRKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGK-LSKKEARKEAVLLLLVGVGLPEEVLNRY-----PH 144 (228)
T ss_pred ccchhhHHHhhccEEEEecCchhhcCCcCCHHHHHHHHHHhccC-CcHHHHHHHHHHHHHHHCCCChhHhhCC-----ch
Confidence 3 23456899999998 466789999999886543221 111111122235788889985 444544 35
Q ss_pred CCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhcceEEEEecCC
Q 000979 755 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGG 833 (1202)
Q Consensus 755 ~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gG 833 (1202)
.||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||+++ ++.+.+|++++|++ |
T Consensus 145 ~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l~~-G 222 (228)
T cd03257 145 ELSGGQRQRVAIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLG-VVAKIADRVAVMYA-G 222 (228)
T ss_pred hcCHHHHHHHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCeEEEEeC-C
Confidence 79999999999999999999999999999999999999999999999765 899999999986 56778999999985 7
Q ss_pred EEEEEc
Q 000979 834 QEIYVG 839 (1202)
Q Consensus 834 ~~~~~G 839 (1202)
+++..|
T Consensus 223 ~i~~~g 228 (228)
T cd03257 223 KIVEEG 228 (228)
T ss_pred EEEecC
Confidence 887654
|
The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. |
| >PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-37 Score=351.40 Aligned_cols=218 Identities=22% Similarity=0.323 Sum_probs=180.8
Q ss_pred eEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCC
Q 000979 604 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 683 (1202)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 683 (1202)
++++|++++|+... ...+.+|+|||++|++||+++|+||||||||||+++|+|... +..|+|.++|.++.
T Consensus 3 l~~~~l~~~y~~~~--------~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~--p~~G~i~~~g~~i~ 72 (286)
T PRK13646 3 IRFDNVSYTYQKGT--------PYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLK--PTTGTVTVDDITIT 72 (286)
T ss_pred EEEEEEEEEECCCC--------ccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCEECc
Confidence 78899999985210 112458999999999999999999999999999999999876 45899999998763
Q ss_pred c-------ccccceEEEeecCC--CCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCCCC
Q 000979 684 Q-------ETFARISGYCEQND--IHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELN-PLRQSLVGLPGV 753 (1202)
Q Consensus 684 ~-------~~~~~~~~~v~q~~--~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-~~~~~~~~~~~~ 753 (1202)
. ...++.+|||+|++ .+++ .||.||+.|+.... ..+.++.+++++++++.+||. +..++. +
T Consensus 73 ~~~~~~~~~~~~~~ig~v~q~~~~~l~~-~tv~e~i~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~ 143 (286)
T PRK13646 73 HKTKDKYIRPVRKRIGMVFQFPESQLFE-DTVEREIIFGPKNF---KMNLDEVKNYAHRLLMDLGFSRDVMSQS-----P 143 (286)
T ss_pred cccccchHHHHHhheEEEecChHhccch-hhHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHcCCChhhhhCC-----c
Confidence 2 13467899999986 3454 59999999875322 233444556788999999996 555554 3
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCCHHHHHhcceEEEEecC
Q 000979 754 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKRG 832 (1202)
Q Consensus 754 ~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~v~~l~~g 832 (1202)
+.||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++++ .|+|||++||+++ ++.+.+||+++|++
T Consensus 144 ~~LSgGq~qrv~laraL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~~-~~~~~~dri~~l~~- 221 (286)
T PRK13646 144 FQMSGGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMN-EVARYADEVIVMKE- 221 (286)
T ss_pred ccCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCEEEEEEC-
Confidence 57999999999999999999999999999999999999999999999975 4899999999986 57789999999984
Q ss_pred CEEEEEcCCC
Q 000979 833 GQEIYVGPLG 842 (1202)
Q Consensus 833 G~~~~~G~~~ 842 (1202)
|++++.|++.
T Consensus 222 G~i~~~g~~~ 231 (286)
T PRK13646 222 GSIVSQTSPK 231 (286)
T ss_pred CEEEEECCHH
Confidence 8999999863
|
|
| >PRK10070 glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-37 Score=360.91 Aligned_cols=204 Identities=24% Similarity=0.293 Sum_probs=176.1
Q ss_pred CceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCCcc---c----ccceEEEeecCCC
Q 000979 627 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQE---T----FARISGYCEQNDI 699 (1202)
Q Consensus 627 ~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~---~----~~~~~~~v~q~~~ 699 (1202)
+...+|+|+||++++||+++|+||||||||||+++|+|... +.+|+|.++|.++... . .++.++||+|++.
T Consensus 39 ~~~~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~--p~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~ 116 (400)
T PRK10070 39 GLSLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIE--PTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFA 116 (400)
T ss_pred CCeEEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCC--CCCCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCc
Confidence 44568999999999999999999999999999999999876 4589999999876431 1 2357999999999
Q ss_pred CCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEE
Q 000979 700 HSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFM 779 (1202)
Q Consensus 700 ~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~illl 779 (1202)
+++.+||+||+.+....+. ...++.+++++++++.++|.+..++.. +.||||||||++|||||+.+|++|||
T Consensus 117 l~~~~Tv~enl~~~~~~~~---~~~~~~~~~~~e~L~~~gL~~~~~~~~-----~~LSgGq~QRv~LArAL~~~P~iLLL 188 (400)
T PRK10070 117 LMPHMTVLDNTAFGMELAG---INAEERREKALDALRQVGLENYAHSYP-----DELSGGMRQRVGLARALAINPDILLM 188 (400)
T ss_pred CCCCCCHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCCChhhhcCc-----ccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 9999999999998765432 233444566889999999988777653 57999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCCHHHHHhcceEEEEecCCEEEEEcCCC
Q 000979 780 DEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLG 842 (1202)
Q Consensus 780 DEPtsgLD~~~~~~v~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G~~~ 842 (1202)
||||+|||+.++..+++.|+++++ .|+|||++||+++ ++.+++|++++|++ |+++..|+++
T Consensus 189 DEPts~LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~~-~~~~~~Dri~vL~~-G~i~~~g~~~ 250 (400)
T PRK10070 189 DEAFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLD-EAMRIGDRIAIMQN-GEVVQVGTPD 250 (400)
T ss_pred ECCCccCCHHHHHHHHHHHHHHHHHCCCeEEEEECCHH-HHHHhCCEEEEEEC-CEEEecCCHH
Confidence 999999999999999999999875 4899999999986 57889999999985 8999999864
|
|
| >cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-38 Score=338.77 Aligned_cols=209 Identities=26% Similarity=0.411 Sum_probs=170.3
Q ss_pred EeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCCcc
Q 000979 606 FDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQE 685 (1202)
Q Consensus 606 ~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~ 685 (1202)
++|++++|+ ++.+|+|+|+++++||+++|+||||||||||+++|+|... +.+|+|.++|.++.
T Consensus 2 ~~~l~~~~~-------------~~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--p~~G~i~~~g~~~~-- 64 (213)
T cd03235 2 VEDLTVSYG-------------GHPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLK--PTSGSIRVFGKPLE-- 64 (213)
T ss_pred cccceeEEC-------------CEEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCC--CCCCEEEECCccHH--
Confidence 467777763 2458999999999999999999999999999999999876 45899999998653
Q ss_pred cccceEEEeecCCCCC--CCCCHHHHHHHHHHccCC-CCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHH
Q 000979 686 TFARISGYCEQNDIHS--PFVTIYESLLFSAWLRLS-PEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRK 762 (1202)
Q Consensus 686 ~~~~~~~~v~q~~~~~--~~lTv~e~l~~~~~~~~~-~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrq 762 (1202)
..++.++|++|++.+. ..+||+||+.+....... .....++.+++++++++.+++.+..++. +..|||||||
T Consensus 65 ~~~~~i~~v~q~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgG~~q 139 (213)
T cd03235 65 KERKRIGYVPQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADRQ-----IGELSGGQQQ 139 (213)
T ss_pred HHHhheEEeccccccccCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHhCC-----cccCCHHHHH
Confidence 3456799999998763 337999999875432110 0011123345678999999998766665 3579999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCCEEEEEc
Q 000979 763 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVG 839 (1202)
Q Consensus 763 Rv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G 839 (1202)
|++|||||+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||+++ ++.+.+|++++|++ | +++.|
T Consensus 140 rv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~sH~~~-~~~~~~d~i~~l~~-~-~~~~g 213 (213)
T cd03235 140 RVLLARALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRREGMTILVVTHDLG-LVLEYFDRVLLLNR-T-VVASG 213 (213)
T ss_pred HHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEcC-c-EeecC
Confidence 999999999999999999999999999999999999999777899999999986 57788999999974 4 66654
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. |
| >COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-38 Score=360.95 Aligned_cols=215 Identities=26% Similarity=0.426 Sum_probs=181.0
Q ss_pred CCceeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcC
Q 000979 600 EPHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISG 679 (1202)
Q Consensus 600 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g 679 (1202)
.+..++.+|++|.|+ +++++++|+|+++++|+.+||+|+||||||||+++|+|..+ +.+|+|.+||
T Consensus 317 ~~~ei~~~~l~~~y~------------~g~~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~--~~~G~I~vng 382 (559)
T COG4988 317 PPIEISLENLSFRYP------------DGKPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLA--PTQGEIRVNG 382 (559)
T ss_pred CCceeeecceEEecC------------CCCcccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCC--CCCceEEECC
Confidence 456677779999986 22378999999999999999999999999999999999887 4589999999
Q ss_pred ccCC---cccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCc------cccccccC
Q 000979 680 YPKK---QETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP------LRQSLVGL 750 (1202)
Q Consensus 680 ~~~~---~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~------~~~~~~~~ 750 (1202)
.+.. ...++++++||+|++.+++ -|++||+.++. ++.++++ +.++++..++.+ -.|+.+|+
T Consensus 383 ~~l~~l~~~~~~k~i~~v~Q~p~lf~-gTireNi~l~~-----~~~s~e~----i~~al~~a~l~~~v~~p~GLdt~ige 452 (559)
T COG4988 383 IDLRDLSPEAWRKQISWVSQNPYLFA-GTIRENILLAR-----PDASDEE----IIAALDQAGLLEFVPKPDGLDTVIGE 452 (559)
T ss_pred ccccccCHHHHHhHeeeeCCCCcccc-ccHHHHhhccC-----CcCCHHH----HHHHHHHhcHHHhhcCCCcccchhcc
Confidence 8754 3568999999999999886 69999999862 2233333 566667666654 34556665
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEe
Q 000979 751 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 830 (1202)
Q Consensus 751 ~~~~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~ 830 (1202)
. .++|||||+|||++||||+++++++++||||++||.++++.|++.|.++++ ++|||++||++. ....+|+|++|+
T Consensus 453 ~-G~~LSgGQ~QRlaLARAll~~~~l~llDEpTA~LD~etE~~i~~~l~~l~~-~ktvl~itHrl~--~~~~~D~I~vld 528 (559)
T COG4988 453 G-GAGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQIILQALQELAK-QKTVLVITHRLE--DAADADRIVVLD 528 (559)
T ss_pred C-CCCCCHHHHHHHHHHHHhcCCCCEEEecCCccCCCHhHHHHHHHHHHHHHh-CCeEEEEEcChH--HHhcCCEEEEec
Confidence 4 467999999999999999999999999999999999999999999999875 599999999975 577889999998
Q ss_pred cCCEEEEEcCCCc
Q 000979 831 RGGQEIYVGPLGR 843 (1202)
Q Consensus 831 ~gG~~~~~G~~~~ 843 (1202)
+ |+++..|..++
T Consensus 529 ~-G~l~~~g~~~~ 540 (559)
T COG4988 529 N-GRLVEQGTHEE 540 (559)
T ss_pred C-CceeccCCHHH
Confidence 5 89999998753
|
|
| >TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-37 Score=337.14 Aligned_cols=211 Identities=25% Similarity=0.323 Sum_probs=173.7
Q ss_pred eEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCC
Q 000979 604 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 683 (1202)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 683 (1202)
++++|++++|+.. .+.+++|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.
T Consensus 2 l~~~~v~~~~~~~---------~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~~~ 70 (221)
T TIGR02211 2 LKCENLGKRYQEG---------KLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDN--PTSGEVLFNGQSLS 70 (221)
T ss_pred EEEEeeeEEccCC---------CcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEEhh
Confidence 5678999887411 112468999999999999999999999999999999999876 45899999998754
Q ss_pred cc---c---cc-ceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCC
Q 000979 684 QE---T---FA-RISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGL 756 (1202)
Q Consensus 684 ~~---~---~~-~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~L 756 (1202)
.. . ++ +.++|++|++.+++.+|++||+.+....+. ....+..+++.++++.+|+.+..++.+ +.|
T Consensus 71 ~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~L 142 (221)
T TIGR02211 71 KLSSNERAKLRNKKLGFIYQFHHLLPDFTALENVAMPLLIGK---KSVKEAKERAYEMLEKVGLEHRINHRP-----SEL 142 (221)
T ss_pred hcCHhHHHHHHHhcEEEEecccccCCCCcHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCChhhhhCCh-----hhC
Confidence 21 1 22 578999999999989999999988654321 222333456788999999987666653 579
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhcceEEEEecCCEE
Q 000979 757 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQE 835 (1202)
Q Consensus 757 SgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~ 835 (1202)
|||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||+++ .+ +.+|++++|++ |++
T Consensus 143 S~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~-~~-~~~d~v~~l~~-G~i 219 (221)
T TIGR02211 143 SGGERQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLE-LA-KKLDRVLEMKD-GQL 219 (221)
T ss_pred CHHHHHHHHHHHHHhCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HH-hhcCEEEEEeC-CEe
Confidence 999999999999999999999999999999999999999999999764 899999999986 34 55899999985 776
Q ss_pred E
Q 000979 836 I 836 (1202)
Q Consensus 836 ~ 836 (1202)
+
T Consensus 220 ~ 220 (221)
T TIGR02211 220 F 220 (221)
T ss_pred c
Confidence 4
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina. |
| >PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-38 Score=349.30 Aligned_cols=214 Identities=23% Similarity=0.317 Sum_probs=180.0
Q ss_pred eEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCC
Q 000979 604 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 683 (1202)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 683 (1202)
++++|+++.|+ +++.+|+||||+|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.
T Consensus 2 l~~~~l~~~~~------------~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~ 67 (274)
T PRK13644 2 IRLENVSYSYP------------DGTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLR--PQKGKVLVSGIDTG 67 (274)
T ss_pred EEEEEEEEEcC------------CCCceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECCEECC
Confidence 57889998873 12348999999999999999999999999999999999876 45899999998764
Q ss_pred c----ccccceEEEeecCCC-CCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCH
Q 000979 684 Q----ETFARISGYCEQNDI-HSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLST 758 (1202)
Q Consensus 684 ~----~~~~~~~~~v~q~~~-~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSg 758 (1202)
. ...++.++|++|++. .+...|++||+.+..... ..+.++.++.++++++.+++.+..++.. +.|||
T Consensus 68 ~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LS~ 139 (274)
T PRK13644 68 DFSKLQGIRKLVGIVFQNPETQFVGRTVEEDLAFGPENL---CLPPIEIRKRVDRALAEIGLEKYRHRSP-----KTLSG 139 (274)
T ss_pred ccccHHHHHhheEEEEEChhhhcccchHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHCCCHHHhcCCc-----ccCCH
Confidence 2 234567999999975 356689999998865322 2234444556889999999987777653 57999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCCEEEEE
Q 000979 759 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYV 838 (1202)
Q Consensus 759 GqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~ 838 (1202)
|||||++|||||+.+|+||||||||+|||+.++..+.+.|++++++|+|||++||+++ ++ +.+|++++|++ |++++.
T Consensus 140 G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~~tH~~~-~~-~~~d~v~~l~~-G~i~~~ 216 (274)
T PRK13644 140 GQGQCVALAGILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGKTIVYITHNLE-EL-HDADRIIVMDR-GKIVLE 216 (274)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HH-hhCCEEEEEEC-CEEEEE
Confidence 9999999999999999999999999999999999999999999877999999999986 45 67999999985 899999
Q ss_pred cCCC
Q 000979 839 GPLG 842 (1202)
Q Consensus 839 G~~~ 842 (1202)
|+++
T Consensus 217 g~~~ 220 (274)
T PRK13644 217 GEPE 220 (274)
T ss_pred CCHH
Confidence 9863
|
|
| >PRK11124 artP arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-37 Score=342.50 Aligned_cols=214 Identities=22% Similarity=0.315 Sum_probs=180.2
Q ss_pred eEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCC
Q 000979 604 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 683 (1202)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 683 (1202)
++++|+++.|+ ++.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.
T Consensus 3 l~~~~l~~~~~-------------~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~ 67 (242)
T PRK11124 3 IQLNGINCFYG-------------AHQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEM--PRSGTLNIAGNHFD 67 (242)
T ss_pred EEEEeeEEEEC-------------CeeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEecc
Confidence 67899998874 2358999999999999999999999999999999999876 45899999998652
Q ss_pred ---------cccccceEEEeecCCCCCCCCCHHHHHHHHH-HccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCC
Q 000979 684 ---------QETFARISGYCEQNDIHSPFVTIYESLLFSA-WLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGV 753 (1202)
Q Consensus 684 ---------~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~-~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~ 753 (1202)
....++.++|++|++.+++.+|+.||+.+.. ... ....++....++++++.+|+.+..++..
T Consensus 68 ~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~i~~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~----- 139 (242)
T PRK11124 68 FSKTPSDKAIRELRRNVGMVFQQYNLWPHLTVQQNLIEAPCRVL---GLSKDQALARAEKLLERLRLKPYADRFP----- 139 (242)
T ss_pred cccccchhhHHHHHhheEEEecCccccCCCcHHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhhhhCCh-----
Confidence 0123567899999999999999999997532 221 1223333456788999999987666653
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCC
Q 000979 754 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGG 833 (1202)
Q Consensus 754 ~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG 833 (1202)
+.||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++|+|+|++||++. ++.+.+|++++|.+ |
T Consensus 140 ~~LS~G~~qrv~laral~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~-~~~~~~d~i~~l~~-g 217 (242)
T PRK11124 140 LHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVE-VARKTASRVVYMEN-G 217 (242)
T ss_pred hhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCEEEEEEC-C
Confidence 579999999999999999999999999999999999999999999998777999999999986 56788999999985 8
Q ss_pred EEEEEcCCC
Q 000979 834 QEIYVGPLG 842 (1202)
Q Consensus 834 ~~~~~G~~~ 842 (1202)
++++.|+++
T Consensus 218 ~i~~~~~~~ 226 (242)
T PRK11124 218 HIVEQGDAS 226 (242)
T ss_pred EEEEeCCHH
Confidence 999999863
|
|
| >PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-37 Score=343.03 Aligned_cols=213 Identities=22% Similarity=0.334 Sum_probs=178.0
Q ss_pred eeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccC
Q 000979 603 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 682 (1202)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 682 (1202)
.++++|++++|+ ++.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+.
T Consensus 5 ~l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--p~~G~i~~~g~~~ 69 (237)
T PRK11614 5 MLSFDKVSAHYG-------------KIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPR--ATSGRIVFDGKDI 69 (237)
T ss_pred EEEEEeEEEeeC-------------CceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCC--CCCceEEECCEec
Confidence 478999998873 2358999999999999999999999999999999999876 4589999999876
Q ss_pred Ccc----cccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHc-CCCccccccccCCCCCCCC
Q 000979 683 KQE----TFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELV-ELNPLRQSLVGLPGVSGLS 757 (1202)
Q Consensus 683 ~~~----~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l-~l~~~~~~~~~~~~~~~LS 757 (1202)
... ..++.++|++|++.+++.+||+||+.+..... ..++.++.++++++.+ ++.+..+.. .+.||
T Consensus 70 ~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~-----~~~~~~~~~~~~l~~~~~l~~~~~~~-----~~~LS 139 (237)
T PRK11614 70 TDWQTAKIMREAVAIVPEGRRVFSRMTVEENLAMGGFFA-----ERDQFQERIKWVYELFPRLHERRIQR-----AGTMS 139 (237)
T ss_pred CCCCHHHHHHhCEEEeccCcccCCCCcHHHHHHHhhhcc-----ChhHHHHHHHHHHHHHHHHHHHHhCc-----hhhCC
Confidence 431 23567999999999999999999998864221 1122233466777777 465544443 35799
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCCEEEE
Q 000979 758 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIY 837 (1202)
Q Consensus 758 gGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~ 837 (1202)
||||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||+++ ++.+.+||+++|++ |++++
T Consensus 140 ~G~~qrl~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-G~i~~ 217 (237)
T PRK11614 140 GGEQQMLAIGRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNAN-QALKLADRGYVLEN-GHVVL 217 (237)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEcCccccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHH-HHHhhCCEEEEEeC-CEEEe
Confidence 99999999999999999999999999999999999999999999877999999999986 58899999999985 89999
Q ss_pred EcCCC
Q 000979 838 VGPLG 842 (1202)
Q Consensus 838 ~G~~~ 842 (1202)
.|+++
T Consensus 218 ~~~~~ 222 (237)
T PRK11614 218 EDTGD 222 (237)
T ss_pred eCCHH
Confidence 99874
|
|
| >cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-37 Score=336.78 Aligned_cols=204 Identities=25% Similarity=0.359 Sum_probs=169.0
Q ss_pred EeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCCc-
Q 000979 606 FDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ- 684 (1202)
Q Consensus 606 ~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~- 684 (1202)
++|+++.|+. .++.+|+|+||++++||+++|+||||||||||+++|+|... +.+|+|.++|.++..
T Consensus 2 ~~~l~~~~~~-----------~~~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~ 68 (211)
T cd03225 2 LKNLSFSYPD-----------GARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLG--PTSGEVLVDGKDLTKL 68 (211)
T ss_pred ceeEEEecCC-----------CCeeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECCEEcccC
Confidence 4677777631 12468999999999999999999999999999999999876 458999999987542
Q ss_pred --ccccceEEEeecCCC-CCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHH
Q 000979 685 --ETFARISGYCEQNDI-HSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQR 761 (1202)
Q Consensus 685 --~~~~~~~~~v~q~~~-~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqr 761 (1202)
..+++.++|++|++. .++.+|++||+.+..... .....+.++.++++++.+++.+..++. ++.||||||
T Consensus 69 ~~~~~~~~i~~~~q~~~~~~~~~t~~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgG~~ 140 (211)
T cd03225 69 SLKELRRKVGLVFQNPDDQFFGPTVEEEVAFGLENL---GLPEEEIEERVEEALELVGLEGLRDRS-----PFTLSGGQK 140 (211)
T ss_pred CHHHHHhhceEEecChhhhcCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCcHhhhcCC-----cccCCHHHH
Confidence 234567899999974 366789999998865322 122333345678899999998766655 357999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEec
Q 000979 762 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKR 831 (1202)
Q Consensus 762 qRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~ 831 (1202)
||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||+++ ++.+.||++++|.+
T Consensus 141 qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~~~-~~~~~~d~i~~l~~ 209 (211)
T cd03225 141 QRVAIAGVLAMDPDILLLDEPTAGLDPAGRRELLELLKKLKAEGKTIIIVTHDLD-LLLELADRVIVLED 209 (211)
T ss_pred HHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEeC
Confidence 9999999999999999999999999999999999999999877999999999986 57778999999985
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-37 Score=348.14 Aligned_cols=215 Identities=25% Similarity=0.363 Sum_probs=181.1
Q ss_pred eEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCC
Q 000979 604 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 683 (1202)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 683 (1202)
++++|++++|+. ++.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.
T Consensus 4 l~~~~l~~~~~~------------~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~ 69 (277)
T PRK13652 4 IETRDLCYSYSG------------SKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILK--PTSGSVLIRGEPIT 69 (277)
T ss_pred EEEEEEEEEeCC------------CCceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEECC
Confidence 678999998841 2348999999999999999999999999999999999876 45899999998764
Q ss_pred c---ccccceEEEeecCCC-CCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHH
Q 000979 684 Q---ETFARISGYCEQNDI-HSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTE 759 (1202)
Q Consensus 684 ~---~~~~~~~~~v~q~~~-~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgG 759 (1202)
. ...++.++|++|++. .+...||.||+.+..... ..+.+..+++++++++.+++.+..++.+ +.||||
T Consensus 70 ~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G 141 (277)
T PRK13652 70 KENIREVRKFVGLVFQNPDDQIFSPTVEQDIAFGPINL---GLDEETVAHRVSSALHMLGLEELRDRVP-----HHLSGG 141 (277)
T ss_pred cCCHHHHHhheEEEecCcccccccccHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHCCChhHhcCCc-----ccCCHH
Confidence 3 234567899999974 334579999998765322 2334444556889999999987767653 579999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhcceEEEEecCCEEEEE
Q 000979 760 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYV 838 (1202)
Q Consensus 760 qrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~ 838 (1202)
||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||+++ ++.+.|||+++|++ |++++.
T Consensus 142 q~qrl~laraL~~~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~-~~~~~~drv~~l~~-G~i~~~ 219 (277)
T PRK13652 142 EKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLD-LVPEMADYIYVMDK-GRIVAY 219 (277)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEEC-CeEEEE
Confidence 999999999999999999999999999999999999999999765 899999999986 57789999999985 899999
Q ss_pred cCCC
Q 000979 839 GPLG 842 (1202)
Q Consensus 839 G~~~ 842 (1202)
|+++
T Consensus 220 g~~~ 223 (277)
T PRK13652 220 GTVE 223 (277)
T ss_pred CCHH
Confidence 9864
|
|
| >PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-37 Score=348.93 Aligned_cols=220 Identities=24% Similarity=0.294 Sum_probs=181.1
Q ss_pred eeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccC
Q 000979 603 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 682 (1202)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 682 (1202)
.++++|+++.|.... ...+.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++
T Consensus 2 ~i~~~~l~~~~~~~~--------~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~--p~~G~i~~~g~~~ 71 (287)
T PRK13641 2 SIKFENVDYIYSPGT--------PMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLK--PSSGTITIAGYHI 71 (287)
T ss_pred EEEEEEEEEEcCCCC--------CccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCEEC
Confidence 367899999884110 012458999999999999999999999999999999999876 4589999999875
Q ss_pred Cc-------ccccceEEEeecCCC-CCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCCCC
Q 000979 683 KQ-------ETFARISGYCEQNDI-HSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELN-PLRQSLVGLPGV 753 (1202)
Q Consensus 683 ~~-------~~~~~~~~~v~q~~~-~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-~~~~~~~~~~~~ 753 (1202)
.. ...++.++|++|++. .+..+||+||+.+..... ....++.+++++++++.+++. +..++. +
T Consensus 72 ~~~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~ 143 (287)
T PRK13641 72 TPETGNKNLKKLRKKVSLVFQFPEAQLFENTVLKDVEFGPKNF---GFSEDEAKEKALKWLKKVGLSEDLISKS-----P 143 (287)
T ss_pred ccccccchHHHHHhceEEEEeChhhhhccchHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCChhHhhCC-----c
Confidence 32 123567999999963 233589999998865432 223444556788999999996 566665 3
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCC
Q 000979 754 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGG 833 (1202)
Q Consensus 754 ~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG 833 (1202)
+.||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++|.|||++||+++ ++.+.||++++|++ |
T Consensus 144 ~~LSgGq~qrl~laral~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tvlivsH~~~-~~~~~~d~v~~l~~-G 221 (287)
T PRK13641 144 FELSGGQMRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMD-DVAEYADDVLVLEH-G 221 (287)
T ss_pred ccCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEEC-C
Confidence 579999999999999999999999999999999999999999999999777999999999986 57889999999985 8
Q ss_pred EEEEEcCCC
Q 000979 834 QEIYVGPLG 842 (1202)
Q Consensus 834 ~~~~~G~~~ 842 (1202)
+++..|+++
T Consensus 222 ~i~~~g~~~ 230 (287)
T PRK13641 222 KLIKHASPK 230 (287)
T ss_pred EEEEeCCHH
Confidence 999999864
|
|
| >PRK14247 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-37 Score=342.48 Aligned_cols=218 Identities=23% Similarity=0.277 Sum_probs=180.0
Q ss_pred eeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCc---eEEEEEEEcC
Q 000979 603 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG---YITGNITISG 679 (1202)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~---~~~G~i~~~g 679 (1202)
.++++|+++.|. ++.+|+|+||++++||+++|+||||||||||+++|+|...+. +.+|+|.++|
T Consensus 3 ~l~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g 69 (250)
T PRK14247 3 KIEIRDLKVSFG-------------QVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDG 69 (250)
T ss_pred eEEEEeeEEEEC-------------CeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECC
Confidence 378899998873 235899999999999999999999999999999999986531 4689999999
Q ss_pred ccCCc---ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCc----cccccccCCC
Q 000979 680 YPKKQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP----LRQSLVGLPG 752 (1202)
Q Consensus 680 ~~~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~----~~~~~~~~~~ 752 (1202)
.++.. ..+++.++|++|++.+++.+||+||+.+....+.. ....++.++.++++++.+++.+ ..++.
T Consensus 70 ~~i~~~~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~----- 143 (250)
T PRK14247 70 QDIFKMDVIELRRRVQMVFQIPNPIPNLSIFENVALGLKLNRL-VKSKKELQERVRWALEKAQLWDEVKDRLDAP----- 143 (250)
T ss_pred EECCcCCHHHHhccEEEEeccCccCCCCcHHHHHHHHHHhccc-cCCHHHHHHHHHHHHHHcCCCcchhhhhcCC-----
Confidence 87642 23456799999999888899999999886543211 1122334456788999999854 23333
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecC
Q 000979 753 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 832 (1202)
Q Consensus 753 ~~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~g 832 (1202)
+.+||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++++ |+|+|++||+++ ++.+.+|++++|++
T Consensus 144 ~~~LSgG~~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~-~~~~~~d~i~~l~~- 220 (250)
T PRK14247 144 AGKLSGGQQQRLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELKK-DMTIVLVTHFPQ-QAARISDYVAFLYK- 220 (250)
T ss_pred cccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhcCEEEEEEC-
Confidence 457999999999999999999999999999999999999999999999854 899999999986 57789999999985
Q ss_pred CEEEEEcCCC
Q 000979 833 GQEIYVGPLG 842 (1202)
Q Consensus 833 G~~~~~G~~~ 842 (1202)
|+++..|+++
T Consensus 221 G~i~~~g~~~ 230 (250)
T PRK14247 221 GQIVEWGPTR 230 (250)
T ss_pred CeEEEECCHH
Confidence 8999999863
|
|
| >TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-37 Score=335.45 Aligned_cols=210 Identities=25% Similarity=0.348 Sum_probs=179.0
Q ss_pred eEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCC
Q 000979 604 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 683 (1202)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 683 (1202)
++++|++++++ ++.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+..
T Consensus 1 l~l~~v~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~~~~~~ 65 (223)
T TIGR03740 1 LETKNLSKRFG-------------KQTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILR--PTSGEIIFDGHPWT 65 (223)
T ss_pred CEEEeEEEEEC-------------CEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEecc
Confidence 35788888763 2468999999999999999999999999999999999876 45899999998764
Q ss_pred cccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHH
Q 000979 684 QETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKR 763 (1202)
Q Consensus 684 ~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqR 763 (1202)
... ++.++|++|++.+++.+|++||+.+....+. .. +..+.++++.+++.+..+... ..||||||||
T Consensus 66 ~~~-~~~~~~~~q~~~~~~~~t~~~~~~~~~~~~~---~~----~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~~r 132 (223)
T TIGR03740 66 RKD-LHKIGSLIESPPLYENLTARENLKVHTTLLG---LP----DSRIDEVLNIVDLTNTGKKKA-----KQFSLGMKQR 132 (223)
T ss_pred ccc-cccEEEEcCCCCccccCCHHHHHHHHHHHcC---CC----HHHHHHHHHHcCCcHHHhhhH-----hhCCHHHHHH
Confidence 322 3578999999999999999999987654321 11 124678899999987766653 5799999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCCEEEEEcCCCc
Q 000979 764 LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLGR 843 (1202)
Q Consensus 764 v~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G~~~~ 843 (1202)
++|||||+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||+++ ++.+.+||+++|.+ |++++.|++.+
T Consensus 133 v~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-g~i~~~~~~~~ 210 (223)
T TIGR03740 133 LGIAIALLNHPKLLILDEPTNGLDPIGIQELRELIRSFPEQGITVILSSHILS-EVQQLADHIGIISE-GVLGYQGKINK 210 (223)
T ss_pred HHHHHHHhcCCCEEEECCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHH-HHHHhcCEEEEEeC-CEEEEecChhh
Confidence 99999999999999999999999999999999999999777999999999986 57789999999985 89999998754
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. |
| >TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-37 Score=355.96 Aligned_cols=205 Identities=21% Similarity=0.310 Sum_probs=177.4
Q ss_pred CceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCc----cCCc---c---cc-cceEEEee
Q 000979 627 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGY----PKKQ---E---TF-ARISGYCE 695 (1202)
Q Consensus 627 ~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~----~~~~---~---~~-~~~~~~v~ 695 (1202)
+...+|+|+||++++||+++|+||||||||||+++|+|... +.+|+|.++|. ++.. . .. ++.++||+
T Consensus 35 g~~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~--p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vf 112 (382)
T TIGR03415 35 GLVVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNP--VSRGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMVF 112 (382)
T ss_pred CCEEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CCCcEEEECCEecccccccCCHHHHHHHhcCCEEEEE
Confidence 56789999999999999999999999999999999999876 45899999996 2211 1 11 25799999
Q ss_pred cCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCC
Q 000979 696 QNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPS 775 (1202)
Q Consensus 696 q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~ 775 (1202)
|++.++|.+||+||+.++...+ ..+.++++++++++++.+||.+..+... .+||||||||++|||||+.+|+
T Consensus 113 Q~~~l~p~~Tv~eNi~~~~~~~---g~~~~~~~~~a~e~le~vgL~~~~~~~~-----~~LSgGq~QRV~LARALa~~P~ 184 (382)
T TIGR03415 113 QKFALMPWLTVEENVAFGLEMQ---GMPEAERRKRVDEQLELVGLAQWADKKP-----GELSGGMQQRVGLARAFAMDAD 184 (382)
T ss_pred CCCcCCCCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchhhcCCh-----hhCCHHHHHHHHHHHHHhcCCC
Confidence 9999999999999999886543 2334556677899999999988777753 5799999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhcceEEEEecCCEEEEEcCCCc
Q 000979 776 IIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLGR 843 (1202)
Q Consensus 776 illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G~~~~ 843 (1202)
||||||||+|||+.++..+++.|++++++ |+|+|++||+++ ++.+++||+++|++ |+++..|++++
T Consensus 185 ILLlDEPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl~-e~~~l~DrI~vl~~-G~iv~~g~~~e 251 (382)
T TIGR03415 185 ILLMDEPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDLD-EALKIGNRIAIMEG-GRIIQHGTPEE 251 (382)
T ss_pred EEEEECCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEecCHHH
Confidence 99999999999999999999999999765 899999999986 57899999999985 89999999753
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines. |
| >PRK14273 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-37 Score=343.14 Aligned_cols=215 Identities=21% Similarity=0.237 Sum_probs=177.1
Q ss_pred eeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCc---eEEEEEEEcC
Q 000979 603 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG---YITGNITISG 679 (1202)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~---~~~G~i~~~g 679 (1202)
.++++|+++.|+ ++.+|+|+||++++||+++|+||||||||||+++|+|..++. +.+|+|.++|
T Consensus 7 ~l~~~~l~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g 73 (254)
T PRK14273 7 IIETENLNLFYT-------------DFKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEG 73 (254)
T ss_pred eEEEeeeEEEeC-------------CceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECC
Confidence 588999999874 235899999999999999999999999999999999976532 2479999999
Q ss_pred ccCCc-----ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCC----ccccccccC
Q 000979 680 YPKKQ-----ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELN----PLRQSLVGL 750 (1202)
Q Consensus 680 ~~~~~-----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~----~~~~~~~~~ 750 (1202)
.++.. ...++.++|++|++.+++ +||+||+.+...... .....+.++.++++++.+++. +..++.
T Consensus 74 ~~i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~--- 147 (254)
T PRK14273 74 KNIYSNNFDILELRRKIGMVFQTPNPFL-MSIYDNISYGPKIHG--TKDKKKLDEIVEQSLKKSALWNEVKDKLNTN--- 147 (254)
T ss_pred EecccccccHHHHhhceEEEeecccccc-CcHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHhCCchhhHHHHhCC---
Confidence 87531 234667999999988875 899999988754321 112233345678888888873 233443
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEe
Q 000979 751 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 830 (1202)
Q Consensus 751 ~~~~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~ 830 (1202)
.+.||||||||++|||+|+.+|++|+|||||+|||+.++..+++.|++++ ++.|||++||+++ ++.+.+||+++|.
T Consensus 148 --~~~LSgG~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tvii~sH~~~-~~~~~~d~i~~l~ 223 (254)
T PRK14273 148 --ALSLSGGQQQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLK-ESYTIIIVTHNMQ-QAGRISDRTAFFL 223 (254)
T ss_pred --cccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHh-cCCEEEEEeCCHH-HHHHhCCEEEEEE
Confidence 45799999999999999999999999999999999999999999999985 4799999999986 5778899999998
Q ss_pred cCCEEEEEcCC
Q 000979 831 RGGQEIYVGPL 841 (1202)
Q Consensus 831 ~gG~~~~~G~~ 841 (1202)
+ |+++..|++
T Consensus 224 ~-G~i~~~g~~ 233 (254)
T PRK14273 224 N-GCIEEESST 233 (254)
T ss_pred C-CEEEEeCCH
Confidence 4 899999986
|
|
| >PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-37 Score=344.36 Aligned_cols=218 Identities=22% Similarity=0.267 Sum_probs=180.9
Q ss_pred eeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccC
Q 000979 603 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 682 (1202)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 682 (1202)
.++++|+++.|+ ++.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++
T Consensus 5 ~l~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~ 69 (255)
T PRK11300 5 LLSVSGLMMRFG-------------GLLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYK--PTGGTILLRGQHI 69 (255)
T ss_pred eEEEeeEEEEEC-------------CEEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcC--CCcceEEECCEEC
Confidence 478999998873 2468999999999999999999999999999999999876 4589999999876
Q ss_pred Ccc---c-ccceEEEeecCCCCCCCCCHHHHHHHHHHccCC----------CCC--CHHHHHHHHHHHHHHcCCCccccc
Q 000979 683 KQE---T-FARISGYCEQNDIHSPFVTIYESLLFSAWLRLS----------PEV--DSETRKMFIDEVMELVELNPLRQS 746 (1202)
Q Consensus 683 ~~~---~-~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~----------~~~--~~~~~~~~~~~~l~~l~l~~~~~~ 746 (1202)
... . .+..++|++|++.+++.+||+||+.++...... ... ...+..+.++++++.+|+.+..+.
T Consensus 70 ~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~ 149 (255)
T PRK11300 70 EGLPGHQIARMGVVRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLEHANR 149 (255)
T ss_pred CCCCHHHHHhcCeEEeccCcccCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChhhhhhC
Confidence 431 1 234589999999999999999999986431100 000 111233457888999999876666
Q ss_pred cccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhcce
Q 000979 747 LVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDE 825 (1202)
Q Consensus 747 ~~~~~~~~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~ 825 (1202)
. ++.||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||+++ ++.+.||+
T Consensus 150 ~-----~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~-~~~~~~d~ 223 (255)
T PRK11300 150 Q-----AGNLAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMK-LVMGISDR 223 (255)
T ss_pred C-----hhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHH-HHHHhCCE
Confidence 5 3579999999999999999999999999999999999999999999999765 899999999986 57789999
Q ss_pred EEEEecCCEEEEEcCCC
Q 000979 826 LFLMKRGGQEIYVGPLG 842 (1202)
Q Consensus 826 v~~l~~gG~~~~~G~~~ 842 (1202)
+++|++ |++++.|+++
T Consensus 224 i~~l~~-g~i~~~~~~~ 239 (255)
T PRK11300 224 IYVVNQ-GTPLANGTPE 239 (255)
T ss_pred EEEEEC-CeEEecCCHH
Confidence 999985 8999999864
|
|
| >PRK13548 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-37 Score=343.61 Aligned_cols=214 Identities=25% Similarity=0.357 Sum_probs=179.9
Q ss_pred eEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCC
Q 000979 604 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 683 (1202)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 683 (1202)
++++|+++.|+ ++.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+..
T Consensus 3 l~~~~l~~~~~-------------~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~--p~~G~i~~~g~~~~ 67 (258)
T PRK13548 3 LEARNLSVRLG-------------GRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELS--PDSGEVRLNGRPLA 67 (258)
T ss_pred EEEEeEEEEeC-------------CeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCCEEEECCEEcc
Confidence 67889998874 2458999999999999999999999999999999999866 45899999998753
Q ss_pred c---ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHH
Q 000979 684 Q---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQ 760 (1202)
Q Consensus 684 ~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGq 760 (1202)
. ...++.++|++|++.+++.+||+||+.+..... ....++.++.++++++.+++.+..++.+ ..|||||
T Consensus 68 ~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgGe 139 (258)
T PRK13548 68 DWSPAELARRRAVLPQHSSLSFPFTVEEVVAMGRAPH---GLSRAEDDALVAAALAQVDLAHLAGRDY-----PQLSGGE 139 (258)
T ss_pred cCCHHHhhhheEEEccCCcCCCCCCHHHHHHhhhccc---CCCcHHHHHHHHHHHHHcCCHhHhcCCc-----ccCCHHH
Confidence 2 223467899999998888899999998864321 1112223445788999999987666653 5799999
Q ss_pred HHHHHHHHHHh------hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-hCCCEEEEEecCCCHHHHHhcceEEEEecCC
Q 000979 761 RKRLTIAVELV------ANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DTGRTVVCTIHQPSIDIFEAFDELFLMKRGG 833 (1202)
Q Consensus 761 rqRv~ia~aL~------~~p~illlDEPtsgLD~~~~~~v~~~l~~~~-~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG 833 (1202)
|||++|||||+ .+|++|+|||||+|||+.++..+.+.|++++ ++|+|||++||++. ++.+.||++++|++ |
T Consensus 140 ~qrv~la~al~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-G 217 (258)
T PRK13548 140 QQRVQLARVLAQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLN-LAARYADRIVLLHQ-G 217 (258)
T ss_pred HHHHHHHHHHhcccccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhcCEEEEEEC-C
Confidence 99999999999 5999999999999999999999999999987 56899999999986 57789999999985 8
Q ss_pred EEEEEcCCC
Q 000979 834 QEIYVGPLG 842 (1202)
Q Consensus 834 ~~~~~G~~~ 842 (1202)
+++..|+++
T Consensus 218 ~i~~~~~~~ 226 (258)
T PRK13548 218 RLVADGTPA 226 (258)
T ss_pred EEEeeCCHH
Confidence 999999864
|
|
| >PRK14268 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-37 Score=342.01 Aligned_cols=215 Identities=24% Similarity=0.289 Sum_probs=178.1
Q ss_pred ceeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCC---ceEEEEEEEc
Q 000979 602 HSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG---GYITGNITIS 678 (1202)
Q Consensus 602 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~---~~~~G~i~~~ 678 (1202)
..++++|+++.|+ ++.+|+|+||++++||+++|+||||||||||+++|+|..++ .+.+|+|.++
T Consensus 11 ~~l~~~~l~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~ 77 (258)
T PRK14268 11 PQIKVENLNLWYG-------------EKQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIE 77 (258)
T ss_pred eeEEEeeeEEEeC-------------CeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEEC
Confidence 3588999998873 23589999999999999999999999999999999997653 1358999999
Q ss_pred CccCCc-----ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCc----ccccccc
Q 000979 679 GYPKKQ-----ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP----LRQSLVG 749 (1202)
Q Consensus 679 g~~~~~-----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~----~~~~~~~ 749 (1202)
|.++.. ...++.++|++|++.+++ +|++||+.+..... ....++.++.++++++.+++.+ ..++.
T Consensus 78 g~~i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~-- 151 (258)
T PRK14268 78 GEDIYEPDVDVVELRKNVGMVFQKPNPFP-MSIYDNVAYGPRIH---GANKKDLDGVVENALRSAALWDETSDRLKSP-- 151 (258)
T ss_pred CEEcccccchHHHHhhhEEEEecCCccCc-ccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCCcchhhhhcCC--
Confidence 987532 124567999999988888 89999999875432 1233333456788999998842 23333
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEE
Q 000979 750 LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLM 829 (1202)
Q Consensus 750 ~~~~~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l 829 (1202)
...||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++++ |+|||++||+++ ++.+.||++++|
T Consensus 152 ---~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~-~~tiiivsH~~~-~~~~~~d~i~~l 226 (258)
T PRK14268 152 ---ALSLSGGQQQRLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLKK-DYTIVIVTHNMQ-QAARISDYTGFF 226 (258)
T ss_pred ---hhhCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhh-CCEEEEEECCHH-HHHHhCCEEEEE
Confidence 357999999999999999999999999999999999999999999999864 799999999986 577889999999
Q ss_pred ecCCEEEEEcCC
Q 000979 830 KRGGQEIYVGPL 841 (1202)
Q Consensus 830 ~~gG~~~~~G~~ 841 (1202)
++ |++++.|++
T Consensus 227 ~~-G~i~~~~~~ 237 (258)
T PRK14268 227 LM-GELIEFGQT 237 (258)
T ss_pred EC-CEEEEeCCH
Confidence 84 899999986
|
|
| >TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-37 Score=341.96 Aligned_cols=214 Identities=22% Similarity=0.303 Sum_probs=180.3
Q ss_pred eEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCC
Q 000979 604 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 683 (1202)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 683 (1202)
++++||++.|+ ++.+|+|+||++++||+++|+||||||||||+++|+|... +.+|+|.++|.++.
T Consensus 1 i~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~i~ 65 (252)
T TIGR03005 1 VRFSDVTKRFG-------------ILTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEP--IDEGQIQVEGEQLY 65 (252)
T ss_pred CEEEEEEEEeC-------------CeeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEcc
Confidence 46789998874 2358999999999999999999999999999999999876 45899999998653
Q ss_pred c----------------ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCcccccc
Q 000979 684 Q----------------ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSL 747 (1202)
Q Consensus 684 ~----------------~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~ 747 (1202)
. ...++.++|++|++.+++..|+.||+.++.... .....++.++.++++++.+++.+..+..
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~--~~~~~~~~~~~~~~~l~~~gl~~~~~~~ 143 (252)
T TIGR03005 66 HMPGRNGPLVPADEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLV--LGMARAEAEKRAMELLDMVGLADKADHM 143 (252)
T ss_pred ccccccccccccchhHHHHHhhCeEEEecCcccCCCCcHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHcCChhHhhcC
Confidence 2 123567999999999999999999998753211 1123334445678899999998766654
Q ss_pred ccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhcceE
Q 000979 748 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDEL 826 (1202)
Q Consensus 748 ~~~~~~~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v 826 (1202)
.+.||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|+|++||+++ ++.+.+||+
T Consensus 144 -----~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~-~~~~~~d~i 217 (252)
T TIGR03005 144 -----PAQLSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMG-FAREFADRV 217 (252)
T ss_pred -----hhhcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHH-HHHHhcCEE
Confidence 3579999999999999999999999999999999999999999999998765 899999999986 577889999
Q ss_pred EEEecCCEEEEEcCC
Q 000979 827 FLMKRGGQEIYVGPL 841 (1202)
Q Consensus 827 ~~l~~gG~~~~~G~~ 841 (1202)
++|++ |+++..|+.
T Consensus 218 ~~l~~-G~i~~~g~~ 231 (252)
T TIGR03005 218 CFFDK-GRIVEQGKP 231 (252)
T ss_pred EEEEC-CEEEEeCCH
Confidence 99985 899999885
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. |
| >COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-37 Score=332.35 Aligned_cols=225 Identities=23% Similarity=0.308 Sum_probs=185.7
Q ss_pred eEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCC-C-c-eEEEEEEEcCc
Q 000979 604 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKT-G-G-YITGNITISGY 680 (1202)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~-~-~-~~~G~i~~~g~ 680 (1202)
++.+|++.++... .+...+++||||++++||++||+|.|||||||+.+.|.|..+ + + ..+|+|.++|.
T Consensus 2 L~v~nL~v~f~~~---------~g~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~ 72 (316)
T COG0444 2 LEVKNLSVSFPTD---------AGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGK 72 (316)
T ss_pred ceEeeeEEEEecC---------CccEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCc
Confidence 5678998888642 234679999999999999999999999999999999999765 2 3 45689999998
Q ss_pred cCCc---c---c-ccceEEEeecCC--CCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCC
Q 000979 681 PKKQ---E---T-FARISGYCEQND--IHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLP 751 (1202)
Q Consensus 681 ~~~~---~---~-~~~~~~~v~q~~--~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~ 751 (1202)
++-. + . +.+.+++++|++ .+.|.+||.+.+.-......... .+++.++++.++++.+|+.+........
T Consensus 73 ~l~~l~~~~~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~~h~~~~-~~~ea~~~a~~~L~~Vgi~~~~~~~~~Y- 150 (316)
T COG0444 73 DLLSLSEKELRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKGL-SKKEAKERAIELLELVGIPDPERRLKSY- 150 (316)
T ss_pred ccccCCHHHHHhhcCceEEEEEcCchhhcCChhhHHHHHHHHHHHhhcch-hhHHHHHHHHHHHHHcCCCCHHHHHhhC-
Confidence 6432 1 1 235799999996 57888999998876554332111 3455667788999999998764443333
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCCHHHHHhcceEEEEe
Q 000979 752 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMK 830 (1202)
Q Consensus 752 ~~~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~v~~l~ 830 (1202)
+++|||||||||.||.||+.+|++|+.||||++||...+.+|+++|+++++ .|.++|++|||+. -+.++||||.||.
T Consensus 151 -PhelSGGMrQRV~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e~~~aiilITHDl~-vva~~aDri~VMY 228 (316)
T COG0444 151 -PHELSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDLG-VVAEIADRVAVMY 228 (316)
T ss_pred -CcccCCcHHHHHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcceEEEEE
Confidence 468999999999999999999999999999999999999999999999986 5999999999997 4889999999998
Q ss_pred cCCEEEEEcCCC
Q 000979 831 RGGQEIYVGPLG 842 (1202)
Q Consensus 831 ~gG~~~~~G~~~ 842 (1202)
.|++|..|+++
T Consensus 229 -aG~iVE~g~~~ 239 (316)
T COG0444 229 -AGRIVEEGPVE 239 (316)
T ss_pred -CcEEEEeCCHH
Confidence 48999999974
|
|
| >PRK14267 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-37 Score=342.49 Aligned_cols=218 Identities=24% Similarity=0.264 Sum_probs=179.5
Q ss_pred eeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCc---eEEEEEEEcC
Q 000979 603 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG---YITGNITISG 679 (1202)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~---~~~G~i~~~g 679 (1202)
.++++|++++|+ ++.+|+|+||++++||+++|+||||||||||+++|+|..++. +.+|+|.++|
T Consensus 4 ~l~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g 70 (253)
T PRK14267 4 AIETVNLRVYYG-------------SNHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFG 70 (253)
T ss_pred eEEEEeEEEEeC-------------CeeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECC
Confidence 478899999874 235899999999999999999999999999999999986542 3589999999
Q ss_pred ccCC--c---ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCc----cccccccC
Q 000979 680 YPKK--Q---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP----LRQSLVGL 750 (1202)
Q Consensus 680 ~~~~--~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~----~~~~~~~~ 750 (1202)
.++. . ..+++.++|++|++.+++.+||.||+.+....+.. ....++.++.++++++.+++.+ ..+..
T Consensus 71 ~~i~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~--- 146 (253)
T PRK14267 71 RNIYSPDVDPIEVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGL-VKSKKELDERVEWALKKAALWDEVKDRLNDY--- 146 (253)
T ss_pred EEccccccChHHHhhceeEEecCCccCCCCcHHHHHHHHHHhcCc-cCCHHHHHHHHHHHHHHcCCccchhhhhccC---
Confidence 8763 1 23456799999999999999999999886543211 1122333455788899988753 22332
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEe
Q 000979 751 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 830 (1202)
Q Consensus 751 ~~~~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~ 830 (1202)
...||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||++||+++ ++.+.+|++++|+
T Consensus 147 --~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~-~~~~~~d~i~~l~ 222 (253)
T PRK14267 147 --PSNLSGGQRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKK-EYTIVLVTHSPA-QAARVSDYVAFLY 222 (253)
T ss_pred --hhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhh-CCEEEEEECCHH-HHHhhCCEEEEEE
Confidence 457999999999999999999999999999999999999999999999865 699999999986 5778899999998
Q ss_pred cCCEEEEEcCCC
Q 000979 831 RGGQEIYVGPLG 842 (1202)
Q Consensus 831 ~gG~~~~~G~~~ 842 (1202)
+ |+++..|+++
T Consensus 223 ~-G~i~~~~~~~ 233 (253)
T PRK14267 223 L-GKLIEVGPTR 233 (253)
T ss_pred C-CEEEEeCCHH
Confidence 5 8999999863
|
|
| >TIGR01978 sufC FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-37 Score=339.81 Aligned_cols=219 Identities=23% Similarity=0.256 Sum_probs=177.0
Q ss_pred eEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCC
Q 000979 604 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 683 (1202)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 683 (1202)
++++|++++|+ ++.+|+|+||++++||+++|+||||||||||+++|+|.....+.+|+|.++|.+..
T Consensus 1 l~~~~l~~~~~-------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~ 67 (243)
T TIGR01978 1 LKIKDLHVSVE-------------DKEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLL 67 (243)
T ss_pred CeEeeEEEEEC-------------CEEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecC
Confidence 35789988874 24589999999999999999999999999999999998421256899999998754
Q ss_pred cc---c-ccceEEEeecCCCCCCCCCHHHHHHHHHHccCC--C--CCCHHHHHHHHHHHHHHcCCC-ccccccccCCCCC
Q 000979 684 QE---T-FARISGYCEQNDIHSPFVTIYESLLFSAWLRLS--P--EVDSETRKMFIDEVMELVELN-PLRQSLVGLPGVS 754 (1202)
Q Consensus 684 ~~---~-~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~--~--~~~~~~~~~~~~~~l~~l~l~-~~~~~~~~~~~~~ 754 (1202)
.. . .+..++|++|++.+++.+|++|++.+....... . ..+.++..++++++++.+++. +..++.+. .
T Consensus 68 ~~~~~~~~~~~i~~v~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~----~ 143 (243)
T TIGR01978 68 ELEPDERARAGLFLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEFLNRSVN----E 143 (243)
T ss_pred CCCHHHhhccceEeeeccccccCCcCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhhcccccc----c
Confidence 31 1 233489999999999999999999876432211 0 112233345678899999997 34454321 2
Q ss_pred CCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHh-cceEEEEecCC
Q 000979 755 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEA-FDELFLMKRGG 833 (1202)
Q Consensus 755 ~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~-~d~v~~l~~gG 833 (1202)
.||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||+++ .+... +|++++|++ |
T Consensus 144 ~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~vsH~~~-~~~~~~~d~i~~l~~-G 221 (243)
T TIGR01978 144 GFSGGEKKRNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQR-LLNYIKPDYVHVLLD-G 221 (243)
T ss_pred CcCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCcEEEEEEecHH-HHHhhcCCeEEEEeC-C
Confidence 49999999999999999999999999999999999999999999999877899999999986 46666 799999984 8
Q ss_pred EEEEEcCC
Q 000979 834 QEIYVGPL 841 (1202)
Q Consensus 834 ~~~~~G~~ 841 (1202)
++++.|++
T Consensus 222 ~i~~~g~~ 229 (243)
T TIGR01978 222 RIVKSGDV 229 (243)
T ss_pred EEEEecCH
Confidence 99999986
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA. |
| >PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-37 Score=349.28 Aligned_cols=224 Identities=18% Similarity=0.225 Sum_probs=181.9
Q ss_pred eEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCC-c-eEEEEEEEcCcc
Q 000979 604 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG-G-YITGNITISGYP 681 (1202)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~-~-~~~G~i~~~g~~ 681 (1202)
++++|+++.|+.. .+...+|+||||+|++||++||+|+||||||||+++|+|..++ + +.+|+|.++|.+
T Consensus 4 L~v~~l~~~~~~~---------~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~ 74 (326)
T PRK11022 4 LNVDKLSVHFGDE---------SAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQD 74 (326)
T ss_pred EEEeCeEEEECCC---------CccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEE
Confidence 7899999988521 1225699999999999999999999999999999999997642 2 358999999987
Q ss_pred CCcc---c----ccceEEEeecCC--CCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCC
Q 000979 682 KKQE---T----FARISGYCEQND--IHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPG 752 (1202)
Q Consensus 682 ~~~~---~----~~~~~~~v~q~~--~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~ 752 (1202)
+... . .++.++||+|++ .+.|.+|+.+++........ ....++.+++++++++.+||.+..+.... .
T Consensus 75 i~~~~~~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~--~~~~~~~~~~~~~~L~~~gL~~~~~~l~~--~ 150 (326)
T PRK11022 75 LQRISEKERRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQ--GGNKKTRRQRAIDLLNQVGIPDPASRLDV--Y 150 (326)
T ss_pred CCcCCHHHHHHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHCCCCChHHHHhC--C
Confidence 6431 1 224699999998 47889999998876543321 22344556678999999999753221111 2
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCCHHHHHhcceEEEEec
Q 000979 753 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKR 831 (1202)
Q Consensus 753 ~~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~v~~l~~ 831 (1202)
+++|||||||||+|||||+.+|++|++||||+|||+.++..+++.|+++++ .|.|+|++|||++ .+.+.+||+++|.
T Consensus 151 p~~LSgGq~QRv~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl~-~~~~~adri~vm~- 228 (326)
T PRK11022 151 PHQLSGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLA-LVAEAAHKIIVMY- 228 (326)
T ss_pred chhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEE-
Confidence 468999999999999999999999999999999999999999999999976 4899999999986 4678999999998
Q ss_pred CCEEEEEcCCC
Q 000979 832 GGQEIYVGPLG 842 (1202)
Q Consensus 832 gG~~~~~G~~~ 842 (1202)
+|+++..|+++
T Consensus 229 ~G~ive~g~~~ 239 (326)
T PRK11022 229 AGQVVETGKAH 239 (326)
T ss_pred CCEEEEECCHH
Confidence 48999999864
|
|
| >KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-38 Score=354.94 Aligned_cols=215 Identities=27% Similarity=0.425 Sum_probs=180.4
Q ss_pred CCCceeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEc
Q 000979 599 FEPHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITIS 678 (1202)
Q Consensus 599 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~ 678 (1202)
..+..++|+||+++|. +++++|+++||+|++||-+||+|+|||||||+||+|.+..+ .+|+|.+|
T Consensus 347 ~~~~~I~F~dV~f~y~------------~k~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d---~sG~I~Id 411 (591)
T KOG0057|consen 347 LFGGSIEFDDVHFSYG------------PKRKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFD---YSGSILID 411 (591)
T ss_pred cCCCcEEEEeeEEEeC------------CCCceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhc---cCCcEEEC
Confidence 3456799999999995 34568999999999999999999999999999999987654 47999999
Q ss_pred CccCCc---ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCC-------Cccccccc
Q 000979 679 GYPKKQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVEL-------NPLRQSLV 748 (1202)
Q Consensus 679 g~~~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l-------~~~~~~~~ 748 (1202)
|.++++ +..|+.+||||||..+|. -||.+|+.|+. +..+.++ +.++.+..++ .+-.+|.+
T Consensus 412 G~dik~~~~~SlR~~Ig~VPQd~~LFn-dTIl~NI~YGn-----~sas~ee----V~e~~k~a~~hd~i~~l~~GY~T~V 481 (591)
T KOG0057|consen 412 GQDIKEVSLESLRQSIGVVPQDSVLFN-DTILYNIKYGN-----PSASDEE----VVEACKRAGLHDVISRLPDGYQTLV 481 (591)
T ss_pred CeeHhhhChHHhhhheeEeCCcccccc-hhHHHHhhcCC-----CCcCHHH----HHHHHHHcCcHHHHHhccccchhhH
Confidence 998754 567899999999888875 69999999863 2334333 3444454444 34566778
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEE
Q 000979 749 GLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFL 828 (1202)
Q Consensus 749 ~~~~~~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~ 828 (1202)
|..|. .|||||||||+||||+++||+|+++|||||+||+++++++++.+++. ..|+|+|++.|+.+ ....||+|++
T Consensus 482 GerG~-~LSGGekQrvslaRa~lKda~Il~~DEaTS~LD~~TE~~i~~~i~~~-~~~rTvI~IvH~l~--ll~~~DkI~~ 557 (591)
T KOG0057|consen 482 GERGL-MLSGGEKQRVSLARAFLKDAPILLLDEATSALDSETEREILDMIMDV-MSGRTVIMIVHRLD--LLKDFDKIIV 557 (591)
T ss_pred hhccc-ccccchHHHHHHHHHHhcCCCeEEecCcccccchhhHHHHHHHHHHh-cCCCeEEEEEecch--hHhcCCEEEE
Confidence 87664 59999999999999999999999999999999999999999999984 46899999999975 6899999999
Q ss_pred EecCCEEEEEcCCCc
Q 000979 829 MKRGGQEIYVGPLGR 843 (1202)
Q Consensus 829 l~~gG~~~~~G~~~~ 843 (1202)
|++ |++...|+-++
T Consensus 558 l~n-G~v~e~gth~e 571 (591)
T KOG0057|consen 558 LDN-GTVKEYGTHSE 571 (591)
T ss_pred EEC-CeeEEeccHHH
Confidence 986 79999998643
|
|
| >PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-37 Score=345.89 Aligned_cols=216 Identities=26% Similarity=0.305 Sum_probs=181.9
Q ss_pred eeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccC
Q 000979 603 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 682 (1202)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 682 (1202)
-++++||++.|+. ..+.+|+|+|++|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++
T Consensus 5 ~l~~~~l~~~~~~-----------~~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~--p~~G~i~~~g~~i 71 (279)
T PRK13635 5 IIRVEHISFRYPD-----------AATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLL--PEAGTITVGGMVL 71 (279)
T ss_pred eEEEEEEEEEeCC-----------CCccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC--CCCcEEEECCEEC
Confidence 3789999998841 12358999999999999999999999999999999999876 4589999999876
Q ss_pred Cc---ccccceEEEeecCCC-CCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCH
Q 000979 683 KQ---ETFARISGYCEQNDI-HSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLST 758 (1202)
Q Consensus 683 ~~---~~~~~~~~~v~q~~~-~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSg 758 (1202)
.. ...++.++|++|++. .++..||.||+.+..... ....++.+++++++++.+||.+..++.. ..|||
T Consensus 72 ~~~~~~~~~~~i~~~~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~LS~ 143 (279)
T PRK13635 72 SEETVWDVRRQVGMVFQNPDNQFVGATVQDDVAFGLENI---GVPREEMVERVDQALRQVGMEDFLNREP-----HRLSG 143 (279)
T ss_pred CcCcHHHHhhheEEEEeCHHHhcccccHHHHHhhhHhhC---CCCHHHHHHHHHHHHHHcCChhhhhCCc-----ccCCH
Confidence 43 234567999999973 666789999998865432 1233444566889999999988777653 57999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhcceEEEEecCCEEEE
Q 000979 759 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIY 837 (1202)
Q Consensus 759 GqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~ 837 (1202)
|||||++|||||+.+|+||+|||||+|||+.++..+.+.|++++++ |+|||++||+++ ++ ..+|++++|.+ |++++
T Consensus 144 G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~-~~-~~~d~i~~l~~-G~i~~ 220 (279)
T PRK13635 144 GQKQRVAIAGVLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLD-EA-AQADRVIVMNK-GEILE 220 (279)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHH-HH-HcCCEEEEEEC-CEEEE
Confidence 9999999999999999999999999999999999999999999876 899999999986 34 46999999985 89999
Q ss_pred EcCCC
Q 000979 838 VGPLG 842 (1202)
Q Consensus 838 ~G~~~ 842 (1202)
.|+++
T Consensus 221 ~g~~~ 225 (279)
T PRK13635 221 EGTPE 225 (279)
T ss_pred ECCHH
Confidence 99864
|
|
| >TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-37 Score=339.91 Aligned_cols=216 Identities=25% Similarity=0.314 Sum_probs=179.7
Q ss_pred eEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCC
Q 000979 604 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 683 (1202)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 683 (1202)
++++|+++.|+ ++++|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+..
T Consensus 3 i~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--p~~G~i~~~g~~~~ 67 (242)
T TIGR03411 3 LYLEGLSVSFD-------------GFKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTR--PDEGSVLFGGTDLT 67 (242)
T ss_pred EEEEeeEEEcC-------------CeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCCeEEECCeecC
Confidence 67889998873 2458999999999999999999999999999999999876 45899999998754
Q ss_pred cc----cccceEEEeecCCCCCCCCCHHHHHHHHHHccCC--C---CCCHHHHHHHHHHHHHHcCCCccccccccCCCCC
Q 000979 684 QE----TFARISGYCEQNDIHSPFVTIYESLLFSAWLRLS--P---EVDSETRKMFIDEVMELVELNPLRQSLVGLPGVS 754 (1202)
Q Consensus 684 ~~----~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~--~---~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~ 754 (1202)
.. ..++.++|++|++.+++.+||+||+.+....... . ....++.+.+++++++.+++.+..+.. ++
T Consensus 68 ~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~ 142 (242)
T TIGR03411 68 GLPEHQIARAGIGRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEADRL-----AG 142 (242)
T ss_pred CCCHHHHHhcCeeEeccccccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCchhhcCC-----hh
Confidence 31 1234699999999999999999999886432100 0 011223345688999999998766665 35
Q ss_pred CCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCCE
Q 000979 755 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQ 834 (1202)
Q Consensus 755 ~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~ 834 (1202)
.||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||++||+++ ++.+.||++++|++ |+
T Consensus 143 ~LS~Ge~qrv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~~-~~~~~~d~i~~l~~-g~ 219 (242)
T TIGR03411 143 LLSHGQKQWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAG-KHSVVVVEHDME-FVRSIADKVTVLHQ-GS 219 (242)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHHHhc-CCEEEEEECCHH-HHHHhCCEEEEEEC-Ce
Confidence 7999999999999999999999999999999999999999999999865 789999999986 57789999999985 89
Q ss_pred EEEEcCCC
Q 000979 835 EIYVGPLG 842 (1202)
Q Consensus 835 ~~~~G~~~ 842 (1202)
++..|+++
T Consensus 220 ~~~~~~~~ 227 (242)
T TIGR03411 220 VLAEGSLD 227 (242)
T ss_pred EEeeCCHH
Confidence 99999864
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-37 Score=350.77 Aligned_cols=225 Identities=20% Similarity=0.290 Sum_probs=184.2
Q ss_pred eeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCc-eEEEEEEEcCcc
Q 000979 603 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG-YITGNITISGYP 681 (1202)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~-~~~G~i~~~g~~ 681 (1202)
-++++|+++.|... .+...+|+||||+|++||+++|+|+||||||||+++|+|...+. ..+|+|.++|.+
T Consensus 12 ~L~i~~l~~~~~~~---------~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~ 82 (330)
T PRK09473 12 LLDVKDLRVTFSTP---------DGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGRE 82 (330)
T ss_pred eEEEeCeEEEEecC---------CCCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEE
Confidence 47899999988531 12356999999999999999999999999999999999986532 238999999988
Q ss_pred CCc---cc---c-cceEEEeecCC--CCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCC
Q 000979 682 KKQ---ET---F-ARISGYCEQND--IHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPG 752 (1202)
Q Consensus 682 ~~~---~~---~-~~~~~~v~q~~--~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~ 752 (1202)
+.. .. + ++.++||+|++ .+.|.+|+.+++........ ..+.++.++++.++++.++|.+..+... ..
T Consensus 83 i~~~~~~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~--~~~~~~~~~~~~~~L~~vgL~~~~~~~~--~~ 158 (330)
T PRK09473 83 ILNLPEKELNKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHK--GMSKAEAFEESVRMLDAVKMPEARKRMK--MY 158 (330)
T ss_pred CCcCCHHHHHHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCCCChHHHhc--CC
Confidence 643 11 2 24799999998 68899999999987654321 2344455567889999999975433221 12
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhcceEEEEec
Q 000979 753 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKR 831 (1202)
Q Consensus 753 ~~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~ 831 (1202)
+++||||||||++|||||+.+|++|++||||+|||+.++..++++|++++++ |.|+|++|||++ .+.+++||+++|.
T Consensus 159 p~~LSgG~~QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~-~~~~~~Dri~vm~- 236 (330)
T PRK09473 159 PHEFSGGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLG-VVAGICDKVLVMY- 236 (330)
T ss_pred cccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCHH-HHHHhCCEEEEEE-
Confidence 4689999999999999999999999999999999999999999999999765 899999999986 4677899999998
Q ss_pred CCEEEEEcCCC
Q 000979 832 GGQEIYVGPLG 842 (1202)
Q Consensus 832 gG~~~~~G~~~ 842 (1202)
+|+++..|+++
T Consensus 237 ~G~ive~g~~~ 247 (330)
T PRK09473 237 AGRTMEYGNAR 247 (330)
T ss_pred CCEEEEECCHH
Confidence 58999999864
|
|
| >cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-37 Score=332.73 Aligned_cols=209 Identities=24% Similarity=0.330 Sum_probs=173.0
Q ss_pred eEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCC
Q 000979 604 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 683 (1202)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 683 (1202)
++++|++++|+. +. .|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.
T Consensus 1 i~~~~l~~~~~~-------------~~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~--~~~G~i~~~g~~~~ 63 (211)
T cd03298 1 VRLDKIRFSYGE-------------QP--MHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFET--PQSGRVLINGVDVT 63 (211)
T ss_pred CEEEeEEEEeCC-------------Ee--cceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEEcC
Confidence 357888887731 12 39999999999999999999999999999999876 45899999998764
Q ss_pred c-ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHH
Q 000979 684 Q-ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRK 762 (1202)
Q Consensus 684 ~-~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrq 762 (1202)
. ...++.++|++|++.+++.+|++||+.+....+. .. .+..+++++++++.+++.+..++.+ ..|||||||
T Consensus 64 ~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~--~~-~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~q 135 (211)
T cd03298 64 AAPPADRPVSMLFQENNLFAHLTVEQNVGLGLSPGL--KL-TAEDRQAIEVALARVGLAGLEKRLP-----GELSGGERQ 135 (211)
T ss_pred cCCHhHccEEEEecccccCCCCcHHHHHhccccccc--Cc-cHHHHHHHHHHHHHcCCHHHHhCCc-----ccCCHHHHH
Confidence 3 1234679999999999999999999987543211 11 1223456789999999987766653 579999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhcceEEEEecCCEEEEEc
Q 000979 763 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVG 839 (1202)
Q Consensus 763 Rv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G 839 (1202)
|++|||||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||+++ ++.+.+|++++|++ |+++..|
T Consensus 136 rv~ia~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l~~-G~i~~~~ 211 (211)
T cd03298 136 RVALARVLVRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQPE-DAKRLAQRVVFLDN-GRIAAQG 211 (211)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHhhhCEEEEEEC-CEEeecC
Confidence 999999999999999999999999999999999999998754 899999999986 57788999999985 7887654
|
Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-37 Score=345.16 Aligned_cols=214 Identities=26% Similarity=0.381 Sum_probs=178.6
Q ss_pred eEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCC
Q 000979 604 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 683 (1202)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 683 (1202)
++++|++++|+ ++.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.
T Consensus 2 l~~~~l~~~~~-------------~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i~ 66 (271)
T PRK13638 2 LATSDLWFRYQ-------------DEPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLR--PQKGAVLWQGKPLD 66 (271)
T ss_pred eEEEEEEEEcC-------------CcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC--CCccEEEECCEEcc
Confidence 57889998873 2348999999999999999999999999999999999876 45899999998763
Q ss_pred c-----ccccceEEEeecCCCC-CCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCC
Q 000979 684 Q-----ETFARISGYCEQNDIH-SPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLS 757 (1202)
Q Consensus 684 ~-----~~~~~~~~~v~q~~~~-~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LS 757 (1202)
. ...++.++|++|++.. +...|+.||+.+..... ....++.++.++++++.+++.+..++. +..||
T Consensus 67 ~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS 138 (271)
T PRK13638 67 YSKRGLLALRQQVATVFQDPEQQIFYTDIDSDIAFSLRNL---GVPEAEITRRVDEALTLVDAQHFRHQP-----IQCLS 138 (271)
T ss_pred cccCCHHHHHhheEEEeeChhhccccccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCHhHhcCC-----chhCC
Confidence 1 1245679999999753 34568999998764332 123333445678899999998776665 35799
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCCEEEE
Q 000979 758 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIY 837 (1202)
Q Consensus 758 gGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~ 837 (1202)
||||||++|||+|+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||+++ .+.+.+|++++|.+ |+++.
T Consensus 139 gG~~qrl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~-~~~~~~d~i~~l~~-G~i~~ 216 (271)
T PRK13638 139 HGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDID-LIYEISDAVYVLRQ-GQILT 216 (271)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEE
Confidence 99999999999999999999999999999999999999999999777999999999986 57788999999985 89999
Q ss_pred EcCCC
Q 000979 838 VGPLG 842 (1202)
Q Consensus 838 ~G~~~ 842 (1202)
.|+++
T Consensus 217 ~g~~~ 221 (271)
T PRK13638 217 HGAPG 221 (271)
T ss_pred eCCHH
Confidence 99863
|
|
| >PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-37 Score=342.99 Aligned_cols=218 Identities=25% Similarity=0.341 Sum_probs=181.0
Q ss_pred eEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCC
Q 000979 604 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 683 (1202)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 683 (1202)
++++|++++|+ ++.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+..
T Consensus 3 l~~~~l~~~~~-------------~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~ 67 (255)
T PRK11231 3 LRTENLTVGYG-------------TKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLT--PQSGTVFLGDKPIS 67 (255)
T ss_pred EEEEeEEEEEC-------------CEEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcC--CCCcEEEECCEEhH
Confidence 67889998873 2468999999999999999999999999999999999865 45899999998653
Q ss_pred c---ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCC-CCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHH
Q 000979 684 Q---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLS-PEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTE 759 (1202)
Q Consensus 684 ~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~-~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgG 759 (1202)
. ...++.++|++|++.+++.+|+.||+.++...... .....+..++.++++++.+++.+..++. .+.||||
T Consensus 68 ~~~~~~~~~~i~~~~q~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G 142 (255)
T PRK11231 68 MLSSRQLARRLALLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLADRR-----LTDLSGG 142 (255)
T ss_pred HCCHHHHhhheEEecccCCCCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHHcCC-----cccCCHH
Confidence 2 23456789999999888889999999875211000 0111122345578899999998776665 3579999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCCEEEEEc
Q 000979 760 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVG 839 (1202)
Q Consensus 760 qrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G 839 (1202)
||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||+++ ++.+.+|++++|++ |+++..|
T Consensus 143 ~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~l~~~~~tiii~tH~~~-~~~~~~d~i~~l~~-G~i~~~~ 220 (255)
T PRK11231 143 QRQRAFLAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHDLN-QASRYCDHLVVLAN-GHVMAQG 220 (255)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEECCHH-HHHHhcCEEEEEEC-CeEEEEc
Confidence 999999999999999999999999999999999999999998777999999999986 57889999999985 7999999
Q ss_pred CCCc
Q 000979 840 PLGR 843 (1202)
Q Consensus 840 ~~~~ 843 (1202)
++++
T Consensus 221 ~~~~ 224 (255)
T PRK11231 221 TPEE 224 (255)
T ss_pred CHHH
Confidence 8753
|
|
| >PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-37 Score=344.87 Aligned_cols=215 Identities=28% Similarity=0.352 Sum_probs=180.1
Q ss_pred eEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCC
Q 000979 604 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 683 (1202)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 683 (1202)
++++|+++.|+ +++.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.
T Consensus 2 l~~~~l~~~~~------------~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~--~~~G~i~~~g~~~~ 67 (275)
T PRK13639 2 LETRDLKYSYP------------DGTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILK--PTSGEVLIKGEPIK 67 (275)
T ss_pred EEEEEEEEEeC------------CCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCccEEEECCEECc
Confidence 57899999874 12358999999999999999999999999999999999876 45899999998763
Q ss_pred c-----ccccceEEEeecCCC-CCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCC
Q 000979 684 Q-----ETFARISGYCEQNDI-HSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLS 757 (1202)
Q Consensus 684 ~-----~~~~~~~~~v~q~~~-~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LS 757 (1202)
. ...++.++|++|++. .+...||.||+.+..... ....++.++++.++++.+++.+..++.+ +.||
T Consensus 68 ~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~e~i~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----~~LS 139 (275)
T PRK13639 68 YDKKSLLEVRKTVGIVFQNPDDQLFAPTVEEDVAFGPLNL---GLSKEEVEKRVKEALKAVGMEGFENKPP-----HHLS 139 (275)
T ss_pred cccchHHHHHhheEEEeeChhhhhccccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCCchhhcCCh-----hhCC
Confidence 1 124567999999963 333479999998764321 1233444556889999999988777653 5799
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCCEEEE
Q 000979 758 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIY 837 (1202)
Q Consensus 758 gGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~ 837 (1202)
||||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++|.|||++||+++ ++.+.||++++|++ |+++.
T Consensus 140 ~Gq~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~~til~vtH~~~-~~~~~~d~i~~l~~-G~i~~ 217 (275)
T PRK13639 140 GGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHDVD-LVPVYADKVYVMSD-GKIIK 217 (275)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhCCEEEEEEC-CEEEE
Confidence 99999999999999999999999999999999999999999999777999999999986 57788999999985 89999
Q ss_pred EcCCC
Q 000979 838 VGPLG 842 (1202)
Q Consensus 838 ~G~~~ 842 (1202)
.|+++
T Consensus 218 ~g~~~ 222 (275)
T PRK13639 218 EGTPK 222 (275)
T ss_pred eCCHH
Confidence 99864
|
|
| >TIGR02769 nickel_nikE nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-37 Score=342.52 Aligned_cols=224 Identities=23% Similarity=0.287 Sum_probs=180.8
Q ss_pred eEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCC
Q 000979 604 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 683 (1202)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 683 (1202)
++++||++.|+.....+ ..+++.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.
T Consensus 3 l~~~~l~~~~~~~~~~~----~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i~ 76 (265)
T TIGR02769 3 LEVRDVTHTYRTGGLFG----AKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEK--PAQGTVSFRGQDLY 76 (265)
T ss_pred EEEEeEEEEeccCcccc----ccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEEcc
Confidence 67899999884210000 0123579999999999999999999999999999999999876 45899999998764
Q ss_pred cc------cccceEEEeecCC--CCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCCCCC
Q 000979 684 QE------TFARISGYCEQND--IHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELN-PLRQSLVGLPGVS 754 (1202)
Q Consensus 684 ~~------~~~~~~~~v~q~~--~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-~~~~~~~~~~~~~ 754 (1202)
.. ..++.++|++|++ .+.+.+||+||+.+...... ....++.+++++++++.+++. +..+.. +.
T Consensus 77 ~~~~~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~ 149 (265)
T TIGR02769 77 QLDRKQRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLT--SLDESEQKARIAELLDMVGLRSEDADKL-----PR 149 (265)
T ss_pred ccCHHHHHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCCChhhhhCC-----hh
Confidence 21 1356799999996 46678999999987543211 122233445678999999995 555554 35
Q ss_pred CCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhcceEEEEecCC
Q 000979 755 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGG 833 (1202)
Q Consensus 755 ~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gG 833 (1202)
.||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||++. .+.+.+|++++|+ +|
T Consensus 150 ~LSgGe~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~-~~~~~~d~i~~l~-~G 227 (265)
T TIGR02769 150 QLSGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLR-LVQSFCQRVAVMD-KG 227 (265)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHH-HHHHHhcEEEEEe-CC
Confidence 79999999999999999999999999999999999999999999998765 899999999986 5677899999998 48
Q ss_pred EEEEEcCCC
Q 000979 834 QEIYVGPLG 842 (1202)
Q Consensus 834 ~~~~~G~~~ 842 (1202)
++++.|+++
T Consensus 228 ~i~~~g~~~ 236 (265)
T TIGR02769 228 QIVEECDVA 236 (265)
T ss_pred EEEEECCHH
Confidence 999999864
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. |
| >PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-37 Score=343.13 Aligned_cols=221 Identities=26% Similarity=0.345 Sum_probs=182.2
Q ss_pred eeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCc-eEEEEEEEcCcc
Q 000979 603 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG-YITGNITISGYP 681 (1202)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~-~~~G~i~~~g~~ 681 (1202)
-++++||++.|+ ++.+|+|+||++++||+++|+||||||||||+++|+|...+. ..+|+|.++|.+
T Consensus 4 ~l~~~nl~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~ 70 (262)
T PRK09984 4 IIRVEKLAKTFN-------------QHQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRT 70 (262)
T ss_pred EEEEeeEEEEeC-------------CeEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEe
Confidence 478899998873 245899999999999999999999999999999999986543 236999999987
Q ss_pred CCc--------ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCC-----CCCCHHHHHHHHHHHHHHcCCCccccccc
Q 000979 682 KKQ--------ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLS-----PEVDSETRKMFIDEVMELVELNPLRQSLV 748 (1202)
Q Consensus 682 ~~~--------~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~-----~~~~~~~~~~~~~~~l~~l~l~~~~~~~~ 748 (1202)
+.. ...++.++|++|++.+++.+||+||+.+......+ .....++.+++++++++.+++.+..++.+
T Consensus 71 ~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 150 (262)
T PRK09984 71 VQREGRLARDIRKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQRV 150 (262)
T ss_pred cccccccchhHHHHHhheEEEccccccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHhCCc
Confidence 532 12345689999999999999999999875421100 00112233456889999999987666653
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhcceEE
Q 000979 749 GLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELF 827 (1202)
Q Consensus 749 ~~~~~~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~ 827 (1202)
..||||||||++|||||+.+|+||+|||||+|||+.++..+.+.|++++++ |+|||++||+++ .+.+.+|+++
T Consensus 151 -----~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~~-~~~~~~d~i~ 224 (262)
T PRK09984 151 -----STLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVD-YALRYCERIV 224 (262)
T ss_pred -----cccCHHHHHHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEE
Confidence 579999999999999999999999999999999999999999999999754 899999999986 4788999999
Q ss_pred EEecCCEEEEEcCCCc
Q 000979 828 LMKRGGQEIYVGPLGR 843 (1202)
Q Consensus 828 ~l~~gG~~~~~G~~~~ 843 (1202)
+|.+ |++++.|++++
T Consensus 225 ~l~~-g~i~~~g~~~~ 239 (262)
T PRK09984 225 ALRQ-GHVFYDGSSQQ 239 (262)
T ss_pred EEEC-CEEEEeCCHHH
Confidence 9985 89999998753
|
|
| >PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-37 Score=348.10 Aligned_cols=226 Identities=23% Similarity=0.243 Sum_probs=185.2
Q ss_pred eeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccC
Q 000979 603 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 682 (1202)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 682 (1202)
-++++|+++.|+...... ...+.+.+|+||||+|++||++||+|+||||||||+++|+|... +.+|+|.++|.++
T Consensus 5 ~l~v~nl~~~~~~~~~~~---~~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~--p~~G~i~~~g~~l 79 (327)
T PRK11308 5 LLQAIDLKKHYPVKRGLF---KPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIET--PTGGELYYQGQDL 79 (327)
T ss_pred eEEEeeeEEEEcCCCCcc---ccCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCC--CCCcEEEECCEEc
Confidence 478999999885321100 00123579999999999999999999999999999999999876 3589999999876
Q ss_pred Cc------ccccceEEEeecCC--CCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCCCC
Q 000979 683 KQ------ETFARISGYCEQND--IHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP-LRQSLVGLPGV 753 (1202)
Q Consensus 683 ~~------~~~~~~~~~v~q~~--~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~-~~~~~~~~~~~ 753 (1202)
.. ..+++.++||+|++ .+.|.+|+.+++........ ....++.++++.++++.+||.+ ..++. +
T Consensus 80 ~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----p 152 (327)
T PRK11308 80 LKADPEAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINT--SLSAAERREKALAMMAKVGLRPEHYDRY-----P 152 (327)
T ss_pred CcCCHHHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHcc--CCCHHHHHHHHHHHHHHCCCChHHhcCC-----C
Confidence 43 12456799999997 58889999999977544321 2334455667899999999963 44544 4
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhcceEEEEecC
Q 000979 754 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRG 832 (1202)
Q Consensus 754 ~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~g 832 (1202)
++||||||||++|||||+.+|++|++||||+|||..++..++++|+++.++ |.|+|++|||++ .+.+.+|++++|.+
T Consensus 153 ~~LSgGq~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~-~~~~~adrv~vm~~- 230 (327)
T PRK11308 153 HMFSGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDLS-VVEHIADEVMVMYL- 230 (327)
T ss_pred ccCCHHHHHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEEC-
Confidence 689999999999999999999999999999999999999999999999764 999999999986 46678999999985
Q ss_pred CEEEEEcCCC
Q 000979 833 GQEIYVGPLG 842 (1202)
Q Consensus 833 G~~~~~G~~~ 842 (1202)
|+++..|+.+
T Consensus 231 G~ive~g~~~ 240 (327)
T PRK11308 231 GRCVEKGTKE 240 (327)
T ss_pred CEEEEECCHH
Confidence 8999999864
|
|
| >cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-37 Score=327.16 Aligned_cols=196 Identities=30% Similarity=0.581 Sum_probs=164.4
Q ss_pred eeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCc-eEEEEEEEcCcc
Q 000979 603 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG-YITGNITISGYP 681 (1202)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~-~~~G~i~~~g~~ 681 (1202)
.++|+||+|.|+.+ .+++.+|+|+||++++||+++|+||||||||||+++|+|..++. +.+|+|.++|.+
T Consensus 3 ~~~~~~~~~~~~~~---------~~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~ 73 (202)
T cd03233 3 TLSWRNISFTTGKG---------RSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIP 73 (202)
T ss_pred eEEEEccEEEeccC---------CCCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEE
Confidence 47899999999632 13457999999999999999999999999999999999986532 568999999987
Q ss_pred CCc--ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHH
Q 000979 682 KKQ--ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTE 759 (1202)
Q Consensus 682 ~~~--~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgG 759 (1202)
... ...++.++|++|++.+++.+||+||+.+..... .+.. ...||||
T Consensus 74 ~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~--------------------------~~~~-----~~~LS~G 122 (202)
T cd03233 74 YKEFAEKYPGEIIYVSEEDVHFPTLTVRETLDFALRCK--------------------------GNEF-----VRGISGG 122 (202)
T ss_pred CccchhhhcceEEEEecccccCCCCcHHHHHhhhhhhc--------------------------cccc-----hhhCCHH
Confidence 643 234667999999999999999999998753210 1222 3579999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhcceEEEEecCCEEEEE
Q 000979 760 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYV 838 (1202)
Q Consensus 760 qrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~ 838 (1202)
||||++|||||+.+|++|+|||||+|||+.+++.+.+.|++++++ +.|+|+++|+...++.+.+|++++|++ |++++.
T Consensus 123 e~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~h~~~~~~~~~d~i~~l~~-G~i~~~ 201 (202)
T cd03233 123 ERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLYQASDEIYDLFDKVLVLYE-GRQIYY 201 (202)
T ss_pred HHHHHHHHHHHhhCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHhCCeEEEEEC-CEEEec
Confidence 999999999999999999999999999999999999999999765 678777777654467889999999985 898876
Q ss_pred c
Q 000979 839 G 839 (1202)
Q Consensus 839 G 839 (1202)
|
T Consensus 202 g 202 (202)
T cd03233 202 G 202 (202)
T ss_pred C
Confidence 5
|
PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-37 Score=343.58 Aligned_cols=219 Identities=26% Similarity=0.371 Sum_probs=181.5
Q ss_pred eeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccC
Q 000979 603 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 682 (1202)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 682 (1202)
.++++|++++|+ ++.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++
T Consensus 11 ~l~i~~l~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~ 75 (265)
T PRK10575 11 TFALRNVSFRVP-------------GRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQP--PSEGEILLDAQPL 75 (265)
T ss_pred eEEEeeEEEEEC-------------CEEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCC--CCCCEEEECCEeh
Confidence 488999998873 2468999999999999999999999999999999999876 4589999999875
Q ss_pred Cc---ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCC-CCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCH
Q 000979 683 KQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLS-PEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLST 758 (1202)
Q Consensus 683 ~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~-~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSg 758 (1202)
.. ...++.++|++|++.+++.+|+.||+.+....... ........+++++++++.+++.+..++.+ +.|||
T Consensus 76 ~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSg 150 (265)
T PRK10575 76 ESWSSKAFARKVAYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLV-----DSLSG 150 (265)
T ss_pred hhCCHHHHhhheEEeccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCc-----ccCCH
Confidence 32 23456799999998888889999999875321100 00111223455788999999987666653 47999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhcceEEEEecCCEEEE
Q 000979 759 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIY 837 (1202)
Q Consensus 759 GqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~ 837 (1202)
|||||++|||||+.+|+||+|||||+|||+.++..+.+.|++++++ |.|||++||+++ ++.+.+|++++|.+ |+++.
T Consensus 151 G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~~-~i~~~~d~i~~l~~-G~i~~ 228 (265)
T PRK10575 151 GERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDIN-MAARYCDYLVALRG-GEMIA 228 (265)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CeEEE
Confidence 9999999999999999999999999999999999999999999765 899999999986 57789999999984 89999
Q ss_pred EcCCCc
Q 000979 838 VGPLGR 843 (1202)
Q Consensus 838 ~G~~~~ 843 (1202)
.|++++
T Consensus 229 ~~~~~~ 234 (265)
T PRK10575 229 QGTPAE 234 (265)
T ss_pred ecCHHH
Confidence 998643
|
|
| >PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-37 Score=345.93 Aligned_cols=218 Identities=23% Similarity=0.324 Sum_probs=178.2
Q ss_pred eEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCC
Q 000979 604 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 683 (1202)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 683 (1202)
++++|++++|+... ...+++|+|+||++++||+++|+||||||||||+++|+|... +.+|+|.++|.++.
T Consensus 3 l~~~~l~~~~~~~~--------~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~--p~~G~i~~~g~~i~ 72 (280)
T PRK13649 3 INLQNVSYTYQAGT--------PFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHV--PTQGSVRVDDTLIT 72 (280)
T ss_pred EEEEEEEEEcCCCC--------ccccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEcc
Confidence 67899999884210 011358999999999999999999999999999999999876 45899999998754
Q ss_pred c-------ccccceEEEeecCC--CCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCCCC
Q 000979 684 Q-------ETFARISGYCEQND--IHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP-LRQSLVGLPGV 753 (1202)
Q Consensus 684 ~-------~~~~~~~~~v~q~~--~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~-~~~~~~~~~~~ 753 (1202)
. ...++.++|++|++ .+++ .||+||+.+..... ..+.++.++.++++++.+++.+ ..+.. +
T Consensus 73 ~~~~~~~~~~~~~~i~~~~q~~~~~~~~-~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~ 143 (280)
T PRK13649 73 STSKNKDIKQIRKKVGLVFQFPESQLFE-ETVLKDVAFGPQNF---GVSQEEAEALAREKLALVGISESLFEKN-----P 143 (280)
T ss_pred ccccccCHHHHHhheEEEeeChhhhhcc-ccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCChhhhhCC-----c
Confidence 2 12456799999996 3444 69999998865322 1223334456788999999963 44544 3
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCC
Q 000979 754 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGG 833 (1202)
Q Consensus 754 ~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG 833 (1202)
+.||||||||++|||||+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||+++ ++.+.+|++++|++ |
T Consensus 144 ~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~-~~~~~~d~i~~l~~-G 221 (280)
T PRK13649 144 FELSGGQMRRVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLMD-DVANYADFVYVLEK-G 221 (280)
T ss_pred ccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHH-HHHHhCCEEEEEEC-C
Confidence 579999999999999999999999999999999999999999999999777899999999986 57788999999985 8
Q ss_pred EEEEEcCCC
Q 000979 834 QEIYVGPLG 842 (1202)
Q Consensus 834 ~~~~~G~~~ 842 (1202)
+++..|+++
T Consensus 222 ~i~~~g~~~ 230 (280)
T PRK13649 222 KLVLSGKPK 230 (280)
T ss_pred EEEEeCCHH
Confidence 999999863
|
|
| >PRK10744 pstB phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-37 Score=340.80 Aligned_cols=219 Identities=21% Similarity=0.262 Sum_probs=179.6
Q ss_pred CCceeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCC--C-ceEEEEEE
Q 000979 600 EPHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKT--G-GYITGNIT 676 (1202)
Q Consensus 600 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~--~-~~~~G~i~ 676 (1202)
....++++|+++.|+ ++.+|+|+|+++++||+++|+||||||||||+++|+|... + .+.+|+|.
T Consensus 10 ~~~~l~~~~l~~~~~-------------~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~ 76 (260)
T PRK10744 10 APSKIQVRNLNFYYG-------------KFHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEIL 76 (260)
T ss_pred CCceEEEEEEEEEeC-------------CeEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEE
Confidence 345689999999884 1358999999999999999999999999999999999754 1 13589999
Q ss_pred EcCccCCc-----ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCc----ccccc
Q 000979 677 ISGYPKKQ-----ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP----LRQSL 747 (1202)
Q Consensus 677 ~~g~~~~~-----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~----~~~~~ 747 (1202)
++|.++.. ...++.++|++|++.+++ .|++||+.+...... ..+.++.+++++++++.+++.+ ..+..
T Consensus 77 ~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~ 153 (260)
T PRK10744 77 LDGENILTPKQDIALLRAKVGMVFQKPTPFP-MSIYDNIAFGVRLFE--KLSRAEMDERVEWALTKAALWNEVKDKLHQS 153 (260)
T ss_pred ECCEEccccccchHHHhcceEEEecCCccCc-CcHHHHHhhhHhhcC--CCCHHHHHHHHHHHHHHcCCChhhHHHHhcC
Confidence 99987632 234567999999988887 899999988653221 1233334456788999998742 23332
Q ss_pred ccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEE
Q 000979 748 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELF 827 (1202)
Q Consensus 748 ~~~~~~~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~ 827 (1202)
...||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++ ++.|||++||+++ ++.+.+|+++
T Consensus 154 -----~~~LS~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~-~~~tiii~sH~~~-~~~~~~d~i~ 226 (260)
T PRK10744 154 -----GYSLSGGQQQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELK-QDYTVVIVTHNMQ-QAARCSDYTA 226 (260)
T ss_pred -----CCCCCHHHHHHHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCHH-HHHHhCCEEE
Confidence 35799999999999999999999999999999999999999999999985 4789999999986 5778899999
Q ss_pred EEecCCEEEEEcCCC
Q 000979 828 LMKRGGQEIYVGPLG 842 (1202)
Q Consensus 828 ~l~~gG~~~~~G~~~ 842 (1202)
+|++ |+++..|+++
T Consensus 227 ~l~~-G~i~~~g~~~ 240 (260)
T PRK10744 227 FMYL-GELIEFGNTD 240 (260)
T ss_pred EEEC-CEEEEeCCHH
Confidence 9985 8999999863
|
|
| >TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-37 Score=336.65 Aligned_cols=212 Identities=25% Similarity=0.317 Sum_probs=175.3
Q ss_pred eEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCC
Q 000979 604 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 683 (1202)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 683 (1202)
++++||++.|+ ++++|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+..
T Consensus 1 l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~ 65 (230)
T TIGR03410 1 LEVSNLNVYYG-------------QSHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLP--VKSGSIRLDGEDIT 65 (230)
T ss_pred CEEEeEEEEeC-------------CeEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCCEEEECCEECC
Confidence 35788888874 2468999999999999999999999999999999999876 45899999998754
Q ss_pred cc----cccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcC-CCccccccccCCCCCCCCH
Q 000979 684 QE----TFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVE-LNPLRQSLVGLPGVSGLST 758 (1202)
Q Consensus 684 ~~----~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~-l~~~~~~~~~~~~~~~LSg 758 (1202)
.. ..++.++|++|++.+++.+|++||+.+....+. .. .++..+++++.++ +.+..++. ++.|||
T Consensus 66 ~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~---~~---~~~~~~~~l~~~~~l~~~~~~~-----~~~LS~ 134 (230)
T TIGR03410 66 KLPPHERARAGIAYVPQGREIFPRLTVEENLLTGLAALP---RR---SRKIPDEIYELFPVLKEMLGRR-----GGDLSG 134 (230)
T ss_pred CCCHHHHHHhCeEEeccCCcccCCCcHHHHHHHHHHhcC---cc---hHHHHHHHHHHHHhHHHHhhCC-----hhhCCH
Confidence 31 124578999999999999999999988654321 11 1223466777776 45544554 357999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhcceEEEEecCCEEEE
Q 000979 759 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIY 837 (1202)
Q Consensus 759 GqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~ 837 (1202)
|||||++|||+|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|+|++||+++ ++.+.+|++++|.+ |+++.
T Consensus 135 G~~qrv~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~v~~l~~-g~i~~ 212 (230)
T TIGR03410 135 GQQQQLAIARALVTRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLD-FARELADRYYVMER-GRVVA 212 (230)
T ss_pred HHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEE
Confidence 9999999999999999999999999999999999999999998764 899999999986 57778999999985 89999
Q ss_pred EcCCCc
Q 000979 838 VGPLGR 843 (1202)
Q Consensus 838 ~G~~~~ 843 (1202)
.|+.++
T Consensus 213 ~~~~~~ 218 (230)
T TIGR03410 213 SGAGDE 218 (230)
T ss_pred ECCHHH
Confidence 998753
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >PRK14242 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-37 Score=339.13 Aligned_cols=220 Identities=23% Similarity=0.309 Sum_probs=177.2
Q ss_pred ceeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCC---CceEEEEEEEc
Q 000979 602 HSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKT---GGYITGNITIS 678 (1202)
Q Consensus 602 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~---~~~~~G~i~~~ 678 (1202)
..++++|++++|. ++.+|+|+||++++||+++|+||||||||||+++|+|... +.+.+|+|.++
T Consensus 5 ~~l~~~~l~~~~~-------------~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~ 71 (253)
T PRK14242 5 PKMEARGLSFFYG-------------DFQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLD 71 (253)
T ss_pred cEEEEeeeEEEEC-------------CeeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEEC
Confidence 4589999999884 2358999999999999999999999999999999999742 11358999999
Q ss_pred CccCCc-----ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCC
Q 000979 679 GYPKKQ-----ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGV 753 (1202)
Q Consensus 679 g~~~~~-----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~ 753 (1202)
|.++.. ...++.++|++|++.+++ .||+||+.+....+. ....+..+++++++++.+++.+....... ...
T Consensus 72 g~~i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-~~~ 147 (253)
T PRK14242 72 GENIYDPHVDVVELRRRVGMVFQKPNPFP-KSIFENVAYGLRVNG--VKDKAYLAERVERSLRHAALWDEVKDRLH-ESA 147 (253)
T ss_pred CEEccccccCHHHHhhcEEEEecCCCCCc-CcHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHHcCCchhhhHHhh-CCc
Confidence 987642 134567999999998887 599999988754321 11222334567888999988542111111 124
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCC
Q 000979 754 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGG 833 (1202)
Q Consensus 754 ~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG 833 (1202)
+.||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++ +|+|||++||+++ ++.+.+|++++|++ |
T Consensus 148 ~~LSgGq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~-~~~tvii~tH~~~-~~~~~~d~v~~l~~-G 224 (253)
T PRK14242 148 LGLSGGQQQRLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELK-ARYTIIIVTHNMQ-QAARVSDVTAFFYM-G 224 (253)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHh-cCCeEEEEEecHH-HHHHhCCEEEEEEC-C
Confidence 5799999999999999999999999999999999999999999999985 4799999999986 57789999999985 8
Q ss_pred EEEEEcCC
Q 000979 834 QEIYVGPL 841 (1202)
Q Consensus 834 ~~~~~G~~ 841 (1202)
+++..|++
T Consensus 225 ~i~~~g~~ 232 (253)
T PRK14242 225 KLIEVGPT 232 (253)
T ss_pred EEEEeCCH
Confidence 99999886
|
|
| >PRK14241 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-37 Score=339.55 Aligned_cols=218 Identities=19% Similarity=0.250 Sum_probs=179.5
Q ss_pred eeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCc---eEEEEEEEcC
Q 000979 603 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG---YITGNITISG 679 (1202)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~---~~~G~i~~~g 679 (1202)
.++++|++++|+ ++.+|+|+|+++++||+++|+||||||||||+++|+|..++. +.+|+|.++|
T Consensus 4 ~l~i~~v~~~~~-------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g 70 (258)
T PRK14241 4 RIDVKDLNIYYG-------------SFHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDG 70 (258)
T ss_pred cEEEeeEEEEEC-------------CEeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECC
Confidence 478899999874 235899999999999999999999999999999999976532 2589999999
Q ss_pred ccCCc-----ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCc----cccccccC
Q 000979 680 YPKKQ-----ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP----LRQSLVGL 750 (1202)
Q Consensus 680 ~~~~~-----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~----~~~~~~~~ 750 (1202)
.++.. ...++.++|++|++.+++.+||+||+.+....+. ....++.++.++++++.+++.+ ..+..
T Consensus 71 ~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~--- 145 (258)
T PRK14241 71 EDLYGPGVDPVAVRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNG--VRNKKDLDELVEKSLRGANLWNEVKDRLDKP--- 145 (258)
T ss_pred EeccccccChHHHhcceEEEccccccCCCCcHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHcCCchhhhhHhhCC---
Confidence 87531 2345679999999999999999999988754321 1123334456788899998842 23332
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEe
Q 000979 751 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 830 (1202)
Q Consensus 751 ~~~~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~ 830 (1202)
+..||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++ +++|||++||+++ ++.+.+|++++|.
T Consensus 146 --~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~-~~~tviivsH~~~-~~~~~~d~i~~l~ 221 (258)
T PRK14241 146 --GGGLSGGQQQRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELK-QDYTIVIVTHNMQ-QAARVSDQTAFFN 221 (258)
T ss_pred --cccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHh-cCCEEEEEecCHH-HHHHhCCEEEEEe
Confidence 45799999999999999999999999999999999999999999999985 4689999999986 5778999999997
Q ss_pred -----cCCEEEEEcCCC
Q 000979 831 -----RGGQEIYVGPLG 842 (1202)
Q Consensus 831 -----~gG~~~~~G~~~ 842 (1202)
+.|++++.|+++
T Consensus 222 ~~~~~~~g~i~~~~~~~ 238 (258)
T PRK14241 222 LEATGKPGRLVEIDDTE 238 (258)
T ss_pred cccCCCCceEEecCCHH
Confidence 258999999863
|
|
| >PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-37 Score=342.66 Aligned_cols=220 Identities=21% Similarity=0.271 Sum_probs=182.6
Q ss_pred ceeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCcc
Q 000979 602 HSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP 681 (1202)
Q Consensus 602 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 681 (1202)
..+.++|++++|+ ++.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+
T Consensus 6 ~~l~i~~l~~~~~-------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~ 70 (265)
T PRK10253 6 ARLRGEQLTLGYG-------------KYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMT--PAHGHVWLDGEH 70 (265)
T ss_pred cEEEEEEEEEEEC-------------CEEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCC--CCCcEEEECCEE
Confidence 4688999999884 2458999999999999999999999999999999999876 458999999987
Q ss_pred CCc---ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCC-CCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCC
Q 000979 682 KKQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLS-PEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLS 757 (1202)
Q Consensus 682 ~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~-~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LS 757 (1202)
+.. ...++.++|++|++.+++.+|++||+.+......+ .....+..++.++++++.+++.+..++. ++.||
T Consensus 71 ~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS 145 (265)
T PRK10253 71 IQHYASKEVARRIGLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQS-----VDTLS 145 (265)
T ss_pred hhhCCHHHHhhheEEeeccCcCCCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCC-----cccCC
Confidence 532 22345789999999998889999999875211100 0001122345678899999998766665 35799
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhcceEEEEecCCEEE
Q 000979 758 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEI 836 (1202)
Q Consensus 758 gGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~ 836 (1202)
||||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++ |.|||++||++. ++.+.+|++++|.+ |+++
T Consensus 146 ~Gq~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~~-~~~~~~d~i~~l~~-G~i~ 223 (265)
T PRK10253 146 GGQRQRAWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLN-QACRYASHLIALRE-GKIV 223 (265)
T ss_pred hHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEE
Confidence 99999999999999999999999999999999999999999999764 899999999986 58899999999984 8999
Q ss_pred EEcCCCc
Q 000979 837 YVGPLGR 843 (1202)
Q Consensus 837 ~~G~~~~ 843 (1202)
..|++++
T Consensus 224 ~~g~~~~ 230 (265)
T PRK10253 224 AQGAPKE 230 (265)
T ss_pred EeCCHHH
Confidence 9998753
|
|
| >PRK14245 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-37 Score=338.07 Aligned_cols=220 Identities=21% Similarity=0.283 Sum_probs=176.6
Q ss_pred eeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCC---CCceEEEEEEEcC
Q 000979 603 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRK---TGGYITGNITISG 679 (1202)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~---~~~~~~G~i~~~g 679 (1202)
.++++|+++.|. ++.+|+|+||++++||+++|+||||||||||+++|+|.. ++.+.+|+|.++|
T Consensus 3 ~l~~~~~~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g 69 (250)
T PRK14245 3 KIDARDVNFWYG-------------DFHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDG 69 (250)
T ss_pred EEEEEEEEEEEC-------------CEeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECC
Confidence 478899998873 245899999999999999999999999999999999952 2212479999999
Q ss_pred ccCCc-----ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCC
Q 000979 680 YPKKQ-----ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVS 754 (1202)
Q Consensus 680 ~~~~~-----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~ 754 (1202)
.++.. ...++.++|++|++.+++ .|++||+.+....+. ....+..++.++++++.+++.+..+.... ...+
T Consensus 70 ~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~~nl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-~~~~ 145 (250)
T PRK14245 70 RNIYDKGVQVDELRKNVGMVFQRPNPFP-KSIFENVAYGLRVNG--VKDNAFIRQRVEETLKGAALWDEVKDKLK-ESAF 145 (250)
T ss_pred EecccccccHHHHhhheEEEecCCccCc-ccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHHcCCCcchhhhhh-CCcc
Confidence 87642 234567999999988887 699999988654331 11122234557889999998642111111 1245
Q ss_pred CCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCCE
Q 000979 755 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQ 834 (1202)
Q Consensus 755 ~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~ 834 (1202)
.||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++. +++|||++||+++ ++.+.|||+++|++ |+
T Consensus 146 ~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tiiivtH~~~-~~~~~~d~v~~l~~-G~ 222 (250)
T PRK14245 146 ALSGGQQQRLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHELK-KDYTIVIVTHNMQ-QAARVSDKTAFFYM-GE 222 (250)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCHH-HHHhhCCEEEEEEC-CE
Confidence 799999999999999999999999999999999999999999999985 5799999999986 57789999999985 89
Q ss_pred EEEEcCCC
Q 000979 835 EIYVGPLG 842 (1202)
Q Consensus 835 ~~~~G~~~ 842 (1202)
+++.|+++
T Consensus 223 ~~~~~~~~ 230 (250)
T PRK14245 223 MVEYDDTK 230 (250)
T ss_pred EEEECCHH
Confidence 99999863
|
|
| >TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-37 Score=341.38 Aligned_cols=218 Identities=28% Similarity=0.400 Sum_probs=180.4
Q ss_pred eEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCC
Q 000979 604 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 683 (1202)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 683 (1202)
++++|+++.|+ ++.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+..
T Consensus 2 l~~~~l~~~~~-------------~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~~~ 66 (256)
T TIGR03873 2 LRLSRVSWSAG-------------GRLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALR--PDAGTVDLAGVDLH 66 (256)
T ss_pred ceEEeEEEEEC-------------CEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCC--CCCCEEEECCEEcc
Confidence 57889998874 2468999999999999999999999999999999999876 45899999998754
Q ss_pred c---ccccceEEEeecCCCCCCCCCHHHHHHHHHH-ccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHH
Q 000979 684 Q---ETFARISGYCEQNDIHSPFVTIYESLLFSAW-LRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTE 759 (1202)
Q Consensus 684 ~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~-~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgG 759 (1202)
. ...++.++|++|++.+++.+||+||+.+... .+........+..++++++++.+++.+..++.+ ..||||
T Consensus 67 ~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G 141 (256)
T TIGR03873 67 GLSRRARARRVALVEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADRDM-----STLSGG 141 (256)
T ss_pred cCCHHHHhhheEEecccCccCCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhhcCCc-----ccCCHH
Confidence 3 2234568999999877888999999987531 100000111223346788999999987666653 579999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCCEEEEEc
Q 000979 760 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVG 839 (1202)
Q Consensus 760 qrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G 839 (1202)
||||++|||||+.+|++++|||||+|||+.++..+.+.|++++++|.|||++||+++ .+.+.+|++++|++ |+++..|
T Consensus 142 ~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-G~i~~~g 219 (256)
T TIGR03873 142 ERQRVHVARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAATGVTVVAALHDLN-LAASYCDHVVVLDG-GRVVAAG 219 (256)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEeC-CCEEEec
Confidence 999999999999999999999999999999999999999999777899999999987 57789999999985 7999999
Q ss_pred CCCc
Q 000979 840 PLGR 843 (1202)
Q Consensus 840 ~~~~ 843 (1202)
+.++
T Consensus 220 ~~~~ 223 (256)
T TIGR03873 220 PPRE 223 (256)
T ss_pred CHHH
Confidence 8643
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. |
| >PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-37 Score=342.76 Aligned_cols=216 Identities=24% Similarity=0.314 Sum_probs=181.1
Q ss_pred eeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccC
Q 000979 603 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 682 (1202)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 682 (1202)
.++++|+++.|+. +++.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++
T Consensus 7 ~l~~~nl~~~~~~-----------~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--p~~G~I~~~g~~i 73 (271)
T PRK13632 7 MIKVENVSFSYPN-----------SENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLK--PQSGEIKIDGITI 73 (271)
T ss_pred EEEEEeEEEEcCC-----------CCccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECCEec
Confidence 5889999998741 12458999999999999999999999999999999999876 4589999999876
Q ss_pred Cc---ccccceEEEeecCCC-CCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCH
Q 000979 683 KQ---ETFARISGYCEQNDI-HSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLST 758 (1202)
Q Consensus 683 ~~---~~~~~~~~~v~q~~~-~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSg 758 (1202)
.. ..+++.++|++|++. .++.+||+||+.+..... ..+.++.+..++++++.+++.+..++.+ +.|||
T Consensus 74 ~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~ 145 (271)
T PRK13632 74 SKENLKEIRKKIGIIFQNPDNQFIGATVEDDIAFGLENK---KVPPKKMKDIIDDLAKKVGMEDYLDKEP-----QNLSG 145 (271)
T ss_pred CcCCHHHHhcceEEEEeCHHHhcCcccHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCCHHHhhCCc-----ccCCH
Confidence 43 234677999999974 567789999998865322 1233344556789999999987777653 57999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhcceEEEEecCCEEEE
Q 000979 759 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIY 837 (1202)
Q Consensus 759 GqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~ 837 (1202)
|||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++ ++|||++||+++ ++ ..+|++++|.+ |+++.
T Consensus 146 G~~qrl~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~-~~~d~v~~l~~-G~i~~ 222 (271)
T PRK13632 146 GQKQRVAIASVLALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMD-EA-ILADKVIVFSE-GKLIA 222 (271)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEechh-HH-hhCCEEEEEEC-CEEEE
Confidence 9999999999999999999999999999999999999999998766 599999999986 34 57999999985 89999
Q ss_pred EcCCC
Q 000979 838 VGPLG 842 (1202)
Q Consensus 838 ~G~~~ 842 (1202)
.|+++
T Consensus 223 ~g~~~ 227 (271)
T PRK13632 223 QGKPK 227 (271)
T ss_pred ecCHH
Confidence 99863
|
|
| >PRK14256 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-36 Score=336.31 Aligned_cols=222 Identities=21% Similarity=0.277 Sum_probs=179.4
Q ss_pred ceeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCC--Cc-eEEEEEEEc
Q 000979 602 HSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKT--GG-YITGNITIS 678 (1202)
Q Consensus 602 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~--~~-~~~G~i~~~ 678 (1202)
..++++|+++.|+ ++.+|+|+|+++++||+++|+||||||||||+++|+|..+ +. +.+|+|.++
T Consensus 3 ~~l~~~nl~~~~~-------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~ 69 (252)
T PRK14256 3 NKVKLEQLNVHFG-------------KNHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLD 69 (252)
T ss_pred cEEEEEEEEEEeC-------------CeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEEC
Confidence 3578999999884 2358999999999999999999999999999999999854 21 257999999
Q ss_pred CccCCc-----ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCC
Q 000979 679 GYPKKQ-----ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGV 753 (1202)
Q Consensus 679 g~~~~~-----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~ 753 (1202)
|.++.. ...++.++|++|++.+++.+|++||+.+...... .....+.+++++++++.+++.+....... ..+
T Consensus 70 g~~i~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-~~~ 146 (252)
T PRK14256 70 DTDIYDRGVDPVSIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNG--RVNRSEADEIVESSLKRVALWDEVKDRLK-SNA 146 (252)
T ss_pred CEEcccccCChHHhhccEEEEecCCCCCCcCcHHHHHHhHHHhcC--CCCHHHHHHHHHHHHHHcCCchhhhHHhh-CCc
Confidence 987632 2346779999999999999999999987643321 11223334557888999998541111111 124
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCC
Q 000979 754 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGG 833 (1202)
Q Consensus 754 ~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG 833 (1202)
+.||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||++||+++ ++.+.||++++|. +|
T Consensus 147 ~~LS~G~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~-~~tiiivsH~~~-~~~~~~d~i~~l~-~G 223 (252)
T PRK14256 147 MELSGGQQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKE-KYTIIIVTHNMQ-QAARVSDYTAFFY-MG 223 (252)
T ss_pred CcCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh-CCcEEEEECCHH-HHHhhCCEEEEEE-CC
Confidence 57999999999999999999999999999999999999999999999965 689999999986 5778999999998 48
Q ss_pred EEEEEcCCC
Q 000979 834 QEIYVGPLG 842 (1202)
Q Consensus 834 ~~~~~G~~~ 842 (1202)
+++..|+++
T Consensus 224 ~i~~~~~~~ 232 (252)
T PRK14256 224 DLVECGETK 232 (252)
T ss_pred EEEEeCCHH
Confidence 999999864
|
|
| >cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-37 Score=323.47 Aligned_cols=190 Identities=58% Similarity=0.938 Sum_probs=162.7
Q ss_pred eeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccC
Q 000979 603 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 682 (1202)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 682 (1202)
.++++|+++.|+.. .+++.+|+|+|+++++||+++|+||||||||||+++|+|.....+.+|+|.++|.++
T Consensus 3 ~l~~~~l~~~~~~~---------~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~ 73 (192)
T cd03232 3 VLTWKNLNYTVPVK---------GGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPL 73 (192)
T ss_pred EEEEeeeEEEecCC---------CCceEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEeh
Confidence 47899999988521 112468999999999999999999999999999999999753235689999999876
Q ss_pred CcccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHH
Q 000979 683 KQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRK 762 (1202)
Q Consensus 683 ~~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrq 762 (1202)
. ...++.++|++|++.+++.+|++||+.+...+ + .|||||||
T Consensus 74 ~-~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~---------------~----------------------~LSgGe~q 115 (192)
T cd03232 74 D-KNFQRSTGYVEQQDVHSPNLTVREALRFSALL---------------R----------------------GLSVEQRK 115 (192)
T ss_pred H-HHhhhceEEecccCccccCCcHHHHHHHHHHH---------------h----------------------cCCHHHhH
Confidence 4 34566799999999999999999999874210 0 49999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCCEEEEEc
Q 000979 763 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVG 839 (1202)
Q Consensus 763 Rv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G 839 (1202)
|++|||||+.+|++|+|||||+|||+.++..+.+.|++++++|+|+|++||+++.++.+.+|++++|+++|++++.|
T Consensus 116 rv~la~al~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiiivtH~~~~~~~~~~d~i~~l~~~g~i~~~g 192 (192)
T cd03232 116 RLTIGVELAAKPSILFLDEPTSGLDSQAAYNIVRFLKKLADSGQAILCTIHQPSASIFEKFDRLLLLKRGGKTVYFG 192 (192)
T ss_pred HHHHHHHHhcCCcEEEEeCCCcCCCHHHHHHHHHHHHHHHHcCCEEEEEEcCChHHHHhhCCEEEEEcCCCeEEeCC
Confidence 99999999999999999999999999999999999999877799999999998644678899999998548998876
|
PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-36 Score=332.67 Aligned_cols=213 Identities=25% Similarity=0.355 Sum_probs=176.1
Q ss_pred eeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccC
Q 000979 603 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 682 (1202)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 682 (1202)
.++++|++++|+.. ...+.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+.
T Consensus 6 ~l~~~~l~~~~~~~---------~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~--p~~G~i~~~g~~~ 74 (228)
T PRK10584 6 IVEVHHLKKSVGQG---------EHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDD--GSSGEVSLVGQPL 74 (228)
T ss_pred eEEEeeeEEEccCC---------CcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCC--CCCeeEEECCEEc
Confidence 47899999987421 011358999999999999999999999999999999999876 4589999999876
Q ss_pred Cccc------c-cceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCC
Q 000979 683 KQET------F-ARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSG 755 (1202)
Q Consensus 683 ~~~~------~-~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~ 755 (1202)
.... . ++.++|++|++.+++.+|+.||+.+....+ .....+.+++++++++.+++.+..++.+ ..
T Consensus 75 ~~~~~~~~~~~~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~ 146 (228)
T PRK10584 75 HQMDEEARAKLRAKHVGFVFQSFMLIPTLNALENVELPALLR---GESSRQSRNGAKALLEQLGLGKRLDHLP-----AQ 146 (228)
T ss_pred ccCCHHHHHHHHhheEEEEEcccccCCCcCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCHhHhhCCh-----hh
Confidence 4311 1 257999999999999999999998865432 1223344566889999999987666653 57
Q ss_pred CCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhcceEEEEecCCE
Q 000979 756 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQ 834 (1202)
Q Consensus 756 LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~ 834 (1202)
||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++ |.|||+++|+++ .+ +.+|++++|++ |+
T Consensus 147 LS~Ge~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~-~~~d~i~~l~~-g~ 223 (228)
T PRK10584 147 LSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQ-LA-ARCDRRLRLVN-GQ 223 (228)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HH-HhCCEEEEEEC-CE
Confidence 9999999999999999999999999999999999999999999998754 899999999986 34 56999999985 78
Q ss_pred EEE
Q 000979 835 EIY 837 (1202)
Q Consensus 835 ~~~ 837 (1202)
++.
T Consensus 224 i~~ 226 (228)
T PRK10584 224 LQE 226 (228)
T ss_pred EEe
Confidence 764
|
|
| >TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-37 Score=329.45 Aligned_cols=210 Identities=23% Similarity=0.313 Sum_probs=175.6
Q ss_pred eEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCC
Q 000979 604 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 683 (1202)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 683 (1202)
++++|+++.|+. +++|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.
T Consensus 1 ~~~~~l~~~~~~---------------~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~ 63 (213)
T TIGR01277 1 LALDKVRYEYEH---------------LPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIE--PASGSIKVNDQSHT 63 (213)
T ss_pred CeEEeeeEEeCC---------------cceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCEEcc
Confidence 357888887731 3579999999999999999999999999999999876 45899999998764
Q ss_pred c-ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHH
Q 000979 684 Q-ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRK 762 (1202)
Q Consensus 684 ~-~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrq 762 (1202)
. ...++.++|++|++.+++.+|+.||+.+...... ... ...+++++++++.+++.+..++. ++.|||||||
T Consensus 64 ~~~~~~~~i~~v~q~~~~~~~~t~~en~~~~~~~~~--~~~-~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~q 135 (213)
T TIGR01277 64 GLAPYQRPVSMLFQENNLFAHLTVRQNIGLGLHPGL--KLN-AEQQEKVVDAAQQVGIADYLDRL-----PEQLSGGQRQ 135 (213)
T ss_pred cCChhccceEEEeccCccCCCCcHHHHHHhHhhccC--Ccc-HHHHHHHHHHHHHcCcHHHhhCC-----cccCCHHHHH
Confidence 3 2345679999999999999999999987543211 111 12244578899999998776665 3579999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhcceEEEEecCCEEEEEcC
Q 000979 763 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGP 840 (1202)
Q Consensus 763 Rv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G~ 840 (1202)
|++|||||+.+|++++|||||+|||+.++..+.+.|+++.++ |+|||++||+++ ++.+.+|++++|+ +|+++..|+
T Consensus 136 rl~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~tii~vsh~~~-~~~~~~d~v~~l~-~g~i~~~~~ 212 (213)
T TIGR01277 136 RVALARCLVRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHLS-DARAIASQIAVVS-QGKIKVVSD 212 (213)
T ss_pred HHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHhhcCeEEEEE-CCeEEEecC
Confidence 999999999999999999999999999999999999998764 899999999986 5678899999998 489998875
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found. |
| >PRK13549 xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-37 Score=373.03 Aligned_cols=222 Identities=21% Similarity=0.301 Sum_probs=186.7
Q ss_pred eeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccC
Q 000979 603 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 682 (1202)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 682 (1202)
.++++|++++|. ++.+|+||||++++||+++|+||||||||||+|+|+|..++++.+|+|.++|.++
T Consensus 5 ~l~~~nl~~~~~-------------~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~ 71 (506)
T PRK13549 5 LLEMKNITKTFG-------------GVKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEEL 71 (506)
T ss_pred eEEEeeeEEEeC-------------CeEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEEC
Confidence 378999999873 2468999999999999999999999999999999999876434689999999876
Q ss_pred Ccc----cccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCH
Q 000979 683 KQE----TFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLST 758 (1202)
Q Consensus 683 ~~~----~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSg 758 (1202)
... ..++.++||+|++.+++.+||+||+.+....+.....+.++.+++++++++.+++.+..++.+ ++|||
T Consensus 72 ~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSg 146 (506)
T PRK13549 72 QASNIRDTERAGIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDINPATPV-----GNLGL 146 (506)
T ss_pred CCCCHHHHHHCCeEEEEeccccCCCCcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCCCCcccch-----hhCCH
Confidence 432 124569999999999999999999988653321111123334456889999999987777654 57999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCCEEEEE
Q 000979 759 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYV 838 (1202)
Q Consensus 759 GqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~ 838 (1202)
|||||++|||||+.+|++|||||||+|||+.++..+.+.|++++++|.|||++||+++ .+.+.||++++|++ |++++.
T Consensus 147 Gqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvi~~tH~~~-~~~~~~d~v~~l~~-G~i~~~ 224 (506)
T PRK13549 147 GQQQLVEIAKALNKQARLLILDEPTASLTESETAVLLDIIRDLKAHGIACIYISHKLN-EVKAISDTICVIRD-GRHIGT 224 (506)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHH-HHHHhcCEEEEEEC-CEEeee
Confidence 9999999999999999999999999999999999999999999877999999999986 57788999999985 899999
Q ss_pred cCCCcc
Q 000979 839 GPLGRH 844 (1202)
Q Consensus 839 G~~~~~ 844 (1202)
|++.+.
T Consensus 225 ~~~~~~ 230 (506)
T PRK13549 225 RPAAGM 230 (506)
T ss_pred cccccC
Confidence 998653
|
|
| >PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-36 Score=347.58 Aligned_cols=226 Identities=15% Similarity=0.196 Sum_probs=180.3
Q ss_pred eEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCC--ceEEEEEEEcCcc
Q 000979 604 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG--GYITGNITISGYP 681 (1202)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~--~~~~G~i~~~g~~ 681 (1202)
++++|+++.|+.. .+...+|+||||+|++||+++|+|+||||||||+++|+|...+ .+.+|+|.++|.+
T Consensus 4 L~v~~l~~~y~~~---------~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~ 74 (330)
T PRK15093 4 LDIRNLTIEFKTS---------DGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDID 74 (330)
T ss_pred EEEeeeEEEEeCC---------CCCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEE
Confidence 7889999988531 1345699999999999999999999999999999999997642 2458999999987
Q ss_pred CCc---cc----ccceEEEeecCCC--CCCCCCHHHHHHHHHHccCCCC---CCHHHHHHHHHHHHHHcCCCcccccccc
Q 000979 682 KKQ---ET----FARISGYCEQNDI--HSPFVTIYESLLFSAWLRLSPE---VDSETRKMFIDEVMELVELNPLRQSLVG 749 (1202)
Q Consensus 682 ~~~---~~----~~~~~~~v~q~~~--~~~~lTv~e~l~~~~~~~~~~~---~~~~~~~~~~~~~l~~l~l~~~~~~~~~ 749 (1202)
+.. .. .++.++||+|++. +.|.+||.+++........... ....+.++++.++++.+||.+..+....
T Consensus 75 i~~~~~~~~~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~ 154 (330)
T PRK15093 75 LLRLSPRERRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDAMRS 154 (330)
T ss_pred CCcCCHHHHHHHhCCCEEEEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHHHHhC
Confidence 642 11 1347999999975 6788999999976432110000 1112345568899999999753221111
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhcceEEE
Q 000979 750 LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFL 828 (1202)
Q Consensus 750 ~~~~~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~ 828 (1202)
.+++|||||||||+|||||+.+|++|+|||||+|||+.++..++++|+++.++ |.|+|++|||++ .+.+++||+++
T Consensus 155 --~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl~-~v~~~~dri~v 231 (330)
T PRK15093 155 --FPYELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQ-MLSQWADKINV 231 (330)
T ss_pred --CchhCCHHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhCCEEEE
Confidence 24689999999999999999999999999999999999999999999999864 899999999986 57789999999
Q ss_pred EecCCEEEEEcCCC
Q 000979 829 MKRGGQEIYVGPLG 842 (1202)
Q Consensus 829 l~~gG~~~~~G~~~ 842 (1202)
|. +|+++..|+.+
T Consensus 232 m~-~G~ive~g~~~ 244 (330)
T PRK15093 232 LY-CGQTVETAPSK 244 (330)
T ss_pred EE-CCEEEEECCHH
Confidence 98 48999999864
|
|
| >cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-37 Score=334.46 Aligned_cols=201 Identities=29% Similarity=0.412 Sum_probs=169.6
Q ss_pred CceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCCc--ccccceEEEee-cCCCCCCC
Q 000979 627 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ--ETFARISGYCE-QNDIHSPF 703 (1202)
Q Consensus 627 ~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~--~~~~~~~~~v~-q~~~~~~~ 703 (1202)
+.+++|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+... ...++.++|++ |++.+++.
T Consensus 32 ~~~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~--p~~G~i~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~ 109 (236)
T cd03267 32 REVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQ--PTSGEVRVAGLVPWKRRKKFLRRIGVVFGQKTQLWWD 109 (236)
T ss_pred CCeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC--CCceEEEECCEEccccchhhcccEEEEcCCccccCCC
Confidence 45679999999999999999999999999999999999876 458999999986432 23456789997 55677888
Q ss_pred CCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCC
Q 000979 704 VTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPT 783 (1202)
Q Consensus 704 lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~illlDEPt 783 (1202)
+|++||+.+..... ....++.++.++++++.+++.+..++.+ +.||||||||++||++|+.+|++|+|||||
T Consensus 110 ~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LS~G~~qrl~la~al~~~p~llllDEPt 181 (236)
T cd03267 110 LPVIDSFYLLAAIY---DLPPARFKKRLDELSELLDLEELLDTPV-----RQLSLGQRMRAEIAAALLHEPEILFLDEPT 181 (236)
T ss_pred CcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhHhcCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEcCCC
Confidence 99999998865432 1223334456788999999987777654 579999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhcceEEEEecCCEEEEEc
Q 000979 784 SGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVG 839 (1202)
Q Consensus 784 sgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G 839 (1202)
+|||+.++..+.+.|++++++ |+|||++||+++ ++.+.+|++++|.+ |++++.|
T Consensus 182 ~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~-~~~~~~d~i~~l~~-G~i~~~g 236 (236)
T cd03267 182 IGLDVVAQENIRNFLKEYNRERGTTVLLTSHYMK-DIEALARRVLVIDK-GRLLYDG 236 (236)
T ss_pred CCCCHHHHHHHHHHHHHHHhcCCCEEEEEecCHH-HHHHhCCEEEEEeC-CEEEecC
Confidence 999999999999999998764 899999999986 57788999999985 7888765
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein. |
| >PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-37 Score=343.97 Aligned_cols=218 Identities=24% Similarity=0.285 Sum_probs=181.3
Q ss_pred eeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCce-EEEEEEEcCcc
Q 000979 603 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGY-ITGNITISGYP 681 (1202)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~-~~G~i~~~g~~ 681 (1202)
.++++|+++.|+. .++.+|+|+||++++||+++|+||||||||||+++|+|..++.. ..|+|.++|.+
T Consensus 5 ~l~i~~l~~~~~~-----------~~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~ 73 (282)
T PRK13640 5 IVEFKHVSFTYPD-----------SKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGIT 73 (282)
T ss_pred eEEEEEEEEEcCC-----------CCccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEE
Confidence 4889999998741 12358999999999999999999999999999999999865321 13899999988
Q ss_pred CCc---ccccceEEEeecCCC-CCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCC
Q 000979 682 KKQ---ETFARISGYCEQNDI-HSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLS 757 (1202)
Q Consensus 682 ~~~---~~~~~~~~~v~q~~~-~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LS 757 (1202)
... ...++.+||++|++. .++..||+||+.|..... ..+.++.+++++++++.+++.+..++. ++.||
T Consensus 74 ~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~-----~~~LS 145 (282)
T PRK13640 74 LTAKTVWDIREKVGIVFQNPDNQFVGATVGDDVAFGLENR---AVPRPEMIKIVRDVLADVGMLDYIDSE-----PANLS 145 (282)
T ss_pred CCcCCHHHHHhheEEEEECHHHhhccCCHHHHHHhhHHhC---CCCHHHHHHHHHHHHHHCCChhHhcCC-----cccCC
Confidence 643 234567999999974 567799999998764322 233444556788999999998776665 35799
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhcceEEEEecCCEEE
Q 000979 758 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEI 836 (1202)
Q Consensus 758 gGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~ 836 (1202)
||||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||+++ .+ ..||++++|.+ |+++
T Consensus 146 ~G~~qrv~laral~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~-~~-~~~d~i~~l~~-G~i~ 222 (282)
T PRK13640 146 GGQKQRVAIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDID-EA-NMADQVLVLDD-GKLL 222 (282)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HH-HhCCEEEEEEC-CEEE
Confidence 99999999999999999999999999999999999999999999765 899999999986 34 67999999984 8999
Q ss_pred EEcCCC
Q 000979 837 YVGPLG 842 (1202)
Q Consensus 837 ~~G~~~ 842 (1202)
..|+++
T Consensus 223 ~~g~~~ 228 (282)
T PRK13640 223 AQGSPV 228 (282)
T ss_pred EeCCHH
Confidence 999863
|
|
| >TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-36 Score=333.96 Aligned_cols=214 Identities=26% Similarity=0.387 Sum_probs=181.2
Q ss_pred eEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCC
Q 000979 604 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 683 (1202)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 683 (1202)
++++|++++|+ ++.+|+|+|+++++||+++|+||||||||||+++|+|..+ +..|+|.++|.++.
T Consensus 1 i~i~~l~~~~~-------------~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~--~~~G~i~i~g~~~~ 65 (237)
T TIGR00968 1 IEIANISKRFG-------------SFQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQ--PDSGRIRLNGQDAT 65 (237)
T ss_pred CEEEEEEEEEC-------------CeeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEEcC
Confidence 35788888874 2358999999999999999999999999999999999876 45899999998764
Q ss_pred cc-cccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHH
Q 000979 684 QE-TFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRK 762 (1202)
Q Consensus 684 ~~-~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrq 762 (1202)
.. ..++.++|++|++.+++.+|+.||+.+....+. .......+.++++++.+++.+..++.. +.||+||||
T Consensus 66 ~~~~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~lS~G~~q 137 (237)
T TIGR00968 66 RVHARDRKIGFVFQHYALFKHLTVRDNIAFGLEIRK---HPKAKIKARVEELLELVQLEGLGDRYP-----NQLSGGQRQ 137 (237)
T ss_pred cCChhhcCEEEEecChhhccCCcHHHHHHhHHHhcC---CCHHHHHHHHHHHHHHcCCHhHhhCCh-----hhCCHHHHH
Confidence 32 234679999999999999999999987654321 222333456788999999987666653 479999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhcceEEEEecCCEEEEEcCC
Q 000979 763 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPL 841 (1202)
Q Consensus 763 Rv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G~~ 841 (1202)
|++|||+|+.+|++++|||||+|||+.++..+.+.|++++++ |+|||++||+++ ++.+.+|++++|. +|+++..|+.
T Consensus 138 rl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~~-~~~~~~d~i~~l~-~g~i~~~~~~ 215 (237)
T TIGR00968 138 RVALARALAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQE-EAMEVADRIVVMS-NGKIEQIGSP 215 (237)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHhhcCEEEEEE-CCEEEEecCH
Confidence 999999999999999999999999999999999999998765 899999999986 5778899999998 4899999986
Q ss_pred C
Q 000979 842 G 842 (1202)
Q Consensus 842 ~ 842 (1202)
+
T Consensus 216 ~ 216 (237)
T TIGR00968 216 D 216 (237)
T ss_pred H
Confidence 4
|
|
| >cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-36 Score=331.73 Aligned_cols=213 Identities=27% Similarity=0.397 Sum_probs=180.6
Q ss_pred eEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCC
Q 000979 604 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 683 (1202)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 683 (1202)
+.++|++++++ .+.+++|+|+++++||+++|+||||||||||+++|+|..+ +..|+|.++|.+..
T Consensus 1 l~~~~l~~~~~-------------~~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~--~~~G~i~~~g~~~~ 65 (232)
T cd03300 1 IELENVSKFYG-------------GFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFET--PTSGEILLDGKDIT 65 (232)
T ss_pred CEEEeEEEEeC-------------CeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEEcC
Confidence 35788888873 2458999999999999999999999999999999999876 45799999998764
Q ss_pred cc-cccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHH
Q 000979 684 QE-TFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRK 762 (1202)
Q Consensus 684 ~~-~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrq 762 (1202)
.. ..++.++|++|++.+++.+|++||+.+....+. ......++.++++++.+++.+..++.. +.|||||||
T Consensus 66 ~~~~~~~~i~~~~q~~~~~~~~t~~~nl~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~lS~G~~q 137 (232)
T cd03300 66 NLPPHKRPVNTVFQNYALFPHLTVFENIAFGLRLKK---LPKAEIKERVAEALDLVQLEGYANRKP-----SQLSGGQQQ 137 (232)
T ss_pred cCChhhcceEEEecccccCCCCcHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCCchhhcCCh-----hhCCHHHHH
Confidence 31 235678999999999988999999988654331 222333456788999999987777653 579999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhcceEEEEecCCEEEEEcCC
Q 000979 763 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPL 841 (1202)
Q Consensus 763 Rv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G~~ 841 (1202)
|++|||||+.+|++++|||||+|||+.++..+.+.|++++++ |+|||+++|++. ++.+.+|++++|.+ |++++.|+.
T Consensus 138 rl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~~-~~~~~~d~i~~l~~-G~~~~~~~~ 215 (232)
T cd03300 138 RVAIARALVNEPKVLLLDEPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQE-EALTMSDRIAVMNK-GKIQQIGTP 215 (232)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCEEEEEEC-CEEEecCCH
Confidence 999999999999999999999999999999999999998765 899999999986 57789999999985 899998874
|
PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-36 Score=340.27 Aligned_cols=216 Identities=24% Similarity=0.294 Sum_probs=180.8
Q ss_pred eeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccC
Q 000979 603 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 682 (1202)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 682 (1202)
.++++|+++.|+. ..+.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+.
T Consensus 7 ~l~i~~l~~~~~~-----------~~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~--~~~G~i~~~g~~~ 73 (269)
T PRK13648 7 IIVFKNVSFQYQS-----------DASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEK--VKSGEIFYNNQAI 73 (269)
T ss_pred eEEEEEEEEEcCC-----------CCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEEC
Confidence 4889999998841 11348999999999999999999999999999999999876 4589999999876
Q ss_pred Cc---ccccceEEEeecCCC-CCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCH
Q 000979 683 KQ---ETFARISGYCEQNDI-HSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLST 758 (1202)
Q Consensus 683 ~~---~~~~~~~~~v~q~~~-~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSg 758 (1202)
.. ...++.++|++|++. +++..|+++|+.+..... ....++..+.++++++.+++.+..+.. ++.|||
T Consensus 74 ~~~~~~~~~~~i~~v~q~~~~~~~~~~v~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~ 145 (269)
T PRK13648 74 TDDNFEKLRKHIGIVFQNPDNQFVGSIVKYDVAFGLENH---AVPYDEMHRRVSEALKQVDMLERADYE-----PNALSG 145 (269)
T ss_pred CcCCHHHHHhheeEEEeChHHhcccccHHHHHHhhHHhc---CCCHHHHHHHHHHHHHHcCCchhhhCC-----cccCCH
Confidence 43 234567999999974 677789999998865322 123333445678899999998776665 357999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhcceEEEEecCCEEEE
Q 000979 759 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIY 837 (1202)
Q Consensus 759 GqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~ 837 (1202)
|||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||+++ ++. .+||+++|++ |+++.
T Consensus 146 G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~-~~~-~~d~i~~l~~-G~i~~ 222 (269)
T PRK13648 146 GQKQRVAIAGVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLS-EAM-EADHVIVMNK-GTVYK 222 (269)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCch-HHh-cCCEEEEEEC-CEEEE
Confidence 9999999999999999999999999999999999999999998764 899999999986 455 4999999985 89999
Q ss_pred EcCCC
Q 000979 838 VGPLG 842 (1202)
Q Consensus 838 ~G~~~ 842 (1202)
.|+++
T Consensus 223 ~g~~~ 227 (269)
T PRK13648 223 EGTPT 227 (269)
T ss_pred ecCHH
Confidence 99874
|
|
| >PRK14235 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-36 Score=337.60 Aligned_cols=217 Identities=23% Similarity=0.262 Sum_probs=178.2
Q ss_pred ceeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCC---ceEEEEEEEc
Q 000979 602 HSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG---GYITGNITIS 678 (1202)
Q Consensus 602 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~---~~~~G~i~~~ 678 (1202)
..++++||++.|+ ++.+|+|+|++|++||+++|+||||||||||+++|+|..++ .+.+|+|.++
T Consensus 18 ~~l~~~nl~~~~~-------------~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~ 84 (267)
T PRK14235 18 IKMRARDVSVFYG-------------EKQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLD 84 (267)
T ss_pred ceEEEEeEEEEEC-------------CEEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEEC
Confidence 3689999999884 24589999999999999999999999999999999997642 1368999999
Q ss_pred CccCCc-----ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCcc----cccccc
Q 000979 679 GYPKKQ-----ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPL----RQSLVG 749 (1202)
Q Consensus 679 g~~~~~-----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~----~~~~~~ 749 (1202)
|.++.. ..+++.++|++|++.+++. ||.||+.+....+.. .....+.+++++++++.+++.+. .+..
T Consensus 85 g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~-- 160 (267)
T PRK14235 85 GEDIYDPRLDVVELRARVGMVFQKPNPFPK-SIYENVAYGPRIHGL-ARSKAELDEIVETSLRKAGLWEEVKDRLHEP-- 160 (267)
T ss_pred CEECcccccchHHHhhceEEEecCCCCCCC-cHHHHHHHHHHhccc-ccchHHHHHHHHHHHHHcCCchhhhHHhhCC--
Confidence 987642 2345679999999888874 999999987543311 11222334567889999998542 2322
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEE
Q 000979 750 LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLM 829 (1202)
Q Consensus 750 ~~~~~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l 829 (1202)
++.||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||++||+++ .+.+.+|++++|
T Consensus 161 ---~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~-~~tiiivtH~~~-~~~~~~d~v~~l 235 (267)
T PRK14235 161 ---GTGLSGGQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQ-NYTIVIVTHSMQ-QAARVSQRTAFF 235 (267)
T ss_pred ---cccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhc-CCeEEEEEcCHH-HHHhhCCEEEEE
Confidence 357999999999999999999999999999999999999999999999865 789999999986 577889999999
Q ss_pred ecCCEEEEEcCC
Q 000979 830 KRGGQEIYVGPL 841 (1202)
Q Consensus 830 ~~gG~~~~~G~~ 841 (1202)
++ |+++..|++
T Consensus 236 ~~-G~i~~~g~~ 246 (267)
T PRK14235 236 HL-GNLVEVGDT 246 (267)
T ss_pred EC-CEEEEeCCH
Confidence 85 899999975
|
|
| >COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-37 Score=350.94 Aligned_cols=213 Identities=24% Similarity=0.379 Sum_probs=180.1
Q ss_pred eeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccC
Q 000979 603 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 682 (1202)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 682 (1202)
.++++||+|+|+. .+.++|+|+||++++||.+||+|+||||||||+++|+|..+ +.+|+|.+||.++
T Consensus 336 ~l~~~~vsF~y~~-----------~~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~--~~~G~i~~~g~~~ 402 (573)
T COG4987 336 ALELRNVSFTYPG-----------QQTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWD--PQQGSITLNGVEI 402 (573)
T ss_pred eeeeccceeecCC-----------CccchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhccC--CCCCeeeECCcCh
Confidence 7899999999973 23468999999999999999999999999999999999766 5589999999886
Q ss_pred Cc---ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCcc-------ccccccCCC
Q 000979 683 KQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPL-------RQSLVGLPG 752 (1202)
Q Consensus 683 ~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~-------~~~~~~~~~ 752 (1202)
.. ..+++.+++++|...+|. -|+|+||..+. ++.++++ +.++++.+||++. .|+.+|+.|
T Consensus 403 ~~l~~~~~~e~i~vl~Qr~hlF~-~Tlr~NL~lA~-----~~AsDEe----l~~aL~qvgL~~l~~~~p~gl~t~lge~G 472 (573)
T COG4987 403 ASLDEQALRETISVLTQRVHLFS-GTLRDNLRLAN-----PDASDEE----LWAALQQVGLEKLLESAPDGLNTWLGEGG 472 (573)
T ss_pred hhCChhhHHHHHhhhccchHHHH-HHHHHHHhhcC-----CCCCHHH----HHHHHHHcCHHHHHHhChhhhhchhccCC
Confidence 43 346778999999877765 79999998753 3344443 5677888887654 344566544
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecC
Q 000979 753 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 832 (1202)
Q Consensus 753 ~~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~g 832 (1202)
+.||||||||++|||+|++|.++++|||||.|||+.+++++++.|.+.+ +|+|+|++||+.. -.+.||||++|++
T Consensus 473 -~~LSGGE~rRLAlAR~LL~dapl~lLDEPTegLD~~TE~~vL~ll~~~~-~~kTll~vTHrL~--~le~~drIivl~~- 547 (573)
T COG4987 473 -RRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLALLFEHA-EGKTLLMVTHRLR--GLERMDRIIVLDN- 547 (573)
T ss_pred -CcCCchHHHHHHHHHHHHcCCCeEEecCCcccCChhhHHHHHHHHHHHh-cCCeEEEEecccc--cHhhcCEEEEEEC-
Confidence 6799999999999999999999999999999999999999999998765 4899999999986 4789999999985
Q ss_pred CEEEEEcCCCc
Q 000979 833 GQEIYVGPLGR 843 (1202)
Q Consensus 833 G~~~~~G~~~~ 843 (1202)
|+++..|..++
T Consensus 548 Gkiie~G~~~~ 558 (573)
T COG4987 548 GKIIEEGTHAE 558 (573)
T ss_pred CeeeecCCHHh
Confidence 89999998743
|
|
| >PRK13547 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-37 Score=339.68 Aligned_cols=220 Identities=26% Similarity=0.353 Sum_probs=178.6
Q ss_pred eEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCc------eEEEEEEE
Q 000979 604 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG------YITGNITI 677 (1202)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~------~~~G~i~~ 677 (1202)
++++|+++++. ++.+|+|+||++++||+++|+||||||||||+++|+|..++. ..+|+|.+
T Consensus 2 l~~~nl~~~~~-------------~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~ 68 (272)
T PRK13547 2 LTADHLHVARR-------------HRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTL 68 (272)
T ss_pred eEEEEEEEEEC-------------CEeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEE
Confidence 57889998773 246899999999999999999999999999999999986532 12799999
Q ss_pred cCccCCc---ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCC-CCCCHHHHHHHHHHHHHHcCCCccccccccCCCC
Q 000979 678 SGYPKKQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLS-PEVDSETRKMFIDEVMELVELNPLRQSLVGLPGV 753 (1202)
Q Consensus 678 ~g~~~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~-~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~ 753 (1202)
+|.+... ...++.++|++|++..++.+||+||+.+....... .....++.++.++++++.+++.+..++. +
T Consensus 69 ~g~~~~~~~~~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~ 143 (272)
T PRK13547 69 NGEPLAAIDAPRLARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGATALVGRD-----V 143 (272)
T ss_pred CCEEcccCCHHHHHhhcEEecccCCCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcHhhhcCC-----c
Confidence 9987642 23455689999998766679999999875321110 0111122345678899999998766654 3
Q ss_pred CCCCHHHHHHHHHHHHHh---------hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhc
Q 000979 754 SGLSTEQRKRLTIAVELV---------ANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAF 823 (1202)
Q Consensus 754 ~~LSgGqrqRv~ia~aL~---------~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~ 823 (1202)
..||||||||++|||||+ .+|++|+|||||+|||+.++..+.+.|++++++ |+|||+++|+++ ++.+.|
T Consensus 144 ~~LSgG~~qrv~laral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~~-~~~~~~ 222 (272)
T PRK13547 144 TTLSGGELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPN-LAARHA 222 (272)
T ss_pred ccCCHHHHHHHHHHHHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhC
Confidence 579999999999999999 599999999999999999999999999998766 899999999986 577899
Q ss_pred ceEEEEecCCEEEEEcCCCc
Q 000979 824 DELFLMKRGGQEIYVGPLGR 843 (1202)
Q Consensus 824 d~v~~l~~gG~~~~~G~~~~ 843 (1202)
|++++|.+ |+++..|++++
T Consensus 223 d~i~~l~~-G~i~~~g~~~~ 241 (272)
T PRK13547 223 DRIAMLAD-GAIVAHGAPAD 241 (272)
T ss_pred CEEEEEEC-CeEEEecCHHH
Confidence 99999985 89999998753
|
|
| >TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-36 Score=382.43 Aligned_cols=213 Identities=26% Similarity=0.401 Sum_probs=175.4
Q ss_pred CceeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCc
Q 000979 601 PHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGY 680 (1202)
Q Consensus 601 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~ 680 (1202)
...++++||+|+|+.+ +++.+|+|+|++++|||.+||+||||||||||+++|+|..+ +.+|+|.+||.
T Consensus 476 ~~~I~~~nVsf~Y~~~----------~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~--p~~G~I~idg~ 543 (711)
T TIGR00958 476 EGLIEFQDVSFSYPNR----------PDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQ--PTGGQVLLDGV 543 (711)
T ss_pred CCeEEEEEEEEECCCC----------CCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccC--CCCCEEEECCE
Confidence 3569999999999632 12468999999999999999999999999999999999877 45899999999
Q ss_pred cCCc---ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCc-------cccccccC
Q 000979 681 PKKQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP-------LRQSLVGL 750 (1202)
Q Consensus 681 ~~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~-------~~~~~~~~ 750 (1202)
++++ ..+++.++||+|++.+++ .|++|||.++. ++.+++ .+.++++..++.+ -.|+.+|.
T Consensus 544 ~i~~~~~~~lr~~i~~v~Q~~~lF~-gTIreNI~~g~-----~~~~~e----~i~~al~~a~l~~~i~~lp~GldT~ige 613 (711)
T TIGR00958 544 PLVQYDHHYLHRQVALVGQEPVLFS-GSVRENIAYGL-----TDTPDE----EIMAAAKAANAHDFIMEFPNGYDTEVGE 613 (711)
T ss_pred EHHhcCHHHHHhhceEEecCccccc-cCHHHHHhcCC-----CCCCHH----HHHHHHHHcCCHHHHHhCCCccCCcccC
Confidence 8654 456788999999999886 79999998752 122322 2556666666543 35677776
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEe
Q 000979 751 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 830 (1202)
Q Consensus 751 ~~~~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~ 830 (1202)
.+ ..||||||||++|||||+++|+||+||||||+||+++++.+.+ .. ..+++|+|++||+++ ..+.+|+|++|+
T Consensus 614 ~G-~~LSGGQkQRlalARALl~~p~ILILDEpTSaLD~~te~~i~~-~~--~~~~~TvIiItHrl~--~i~~aD~IivL~ 687 (711)
T TIGR00958 614 KG-SQLSGGQKQRIAIARALVRKPRVLILDEATSALDAECEQLLQE-SR--SRASRTVLLIAHRLS--TVERADQILVLK 687 (711)
T ss_pred CC-CcCCHHHHHHHHHHHHHhcCCCEEEEEccccccCHHHHHHHHH-hh--ccCCCeEEEEeccHH--HHHhCCEEEEEE
Confidence 54 5699999999999999999999999999999999999999988 22 235899999999985 567899999998
Q ss_pred cCCEEEEEcCCC
Q 000979 831 RGGQEIYVGPLG 842 (1202)
Q Consensus 831 ~gG~~~~~G~~~ 842 (1202)
+ |+++..|+.+
T Consensus 688 ~-G~ive~Gt~~ 698 (711)
T TIGR00958 688 K-GSVVEMGTHK 698 (711)
T ss_pred C-CEEEEeeCHH
Confidence 4 8999999863
|
|
| >PRK13633 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-37 Score=342.88 Aligned_cols=220 Identities=21% Similarity=0.291 Sum_probs=181.2
Q ss_pred eeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccC
Q 000979 603 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 682 (1202)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 682 (1202)
-++++|++++|+... ....+.+|+|+||+|++||+++|+||||||||||+++|+|... +.+|+|.++|.++
T Consensus 4 ~l~~~~l~~~~~~~~-------~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--~~~G~i~i~g~~i 74 (280)
T PRK13633 4 MIKCKNVSYKYESNE-------ESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLI--PSEGKVYVDGLDT 74 (280)
T ss_pred eEEEeeeEEEcCCCC-------CCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEec
Confidence 478999999985210 0013468999999999999999999999999999999999876 4589999999876
Q ss_pred Cc----ccccceEEEeecCCC-CCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCC
Q 000979 683 KQ----ETFARISGYCEQNDI-HSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLS 757 (1202)
Q Consensus 683 ~~----~~~~~~~~~v~q~~~-~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LS 757 (1202)
.. ...++.++|++|++. .+...||.||+.|..... .....+.+++++++++.+||.+..++.+ +.||
T Consensus 75 ~~~~~~~~~~~~i~~v~q~~~~~~~~~~v~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~LS 146 (280)
T PRK13633 75 SDEENLWDIRNKAGMVFQNPDNQIVATIVEEDVAFGPENL---GIPPEEIRERVDESLKKVGMYEYRRHAP-----HLLS 146 (280)
T ss_pred cccccHHHHhhheEEEecChhhhhccccHHHHHHhhHhhc---CCCHHHHHHHHHHHHHHCCCHhHhhCCc-----ccCC
Confidence 43 234677999999974 233469999998875422 2233444566889999999988777753 5799
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhcceEEEEecCCEEE
Q 000979 758 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEI 836 (1202)
Q Consensus 758 gGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~ 836 (1202)
||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||+++ ++. .+|++++|++ |+++
T Consensus 147 ~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~~-~~~-~~d~v~~l~~-G~i~ 223 (280)
T PRK13633 147 GGQKQRVAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYME-EAV-EADRIIVMDS-GKVV 223 (280)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecChH-HHh-cCCEEEEEEC-CEEE
Confidence 99999999999999999999999999999999999999999999764 999999999987 454 4999999985 8999
Q ss_pred EEcCCC
Q 000979 837 YVGPLG 842 (1202)
Q Consensus 837 ~~G~~~ 842 (1202)
..|+++
T Consensus 224 ~~g~~~ 229 (280)
T PRK13633 224 MEGTPK 229 (280)
T ss_pred EecCHH
Confidence 999864
|
|
| >PRK11144 modC molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-37 Score=352.07 Aligned_cols=191 Identities=23% Similarity=0.376 Sum_probs=167.8
Q ss_pred cceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCCc-------ccccceEEEeecCCCCCCCCCH
Q 000979 634 GVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ-------ETFARISGYCEQNDIHSPFVTI 706 (1202)
Q Consensus 634 ~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~-------~~~~~~~~~v~q~~~~~~~lTv 706 (1202)
|+||++++||+++|+|||||||||||++|+|..+ +.+|+|.++|.+... ...++.++|++|++.+++.+||
T Consensus 16 ~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~--p~~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv 93 (352)
T PRK11144 16 TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTR--PQKGRIVLNGRVLFDAEKGICLPPEKRRIGYVFQDARLFPHYKV 93 (352)
T ss_pred EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEccccccccccchhhCCEEEEcCCcccCCCCcH
Confidence 8999999999999999999999999999999876 458999999987532 1245679999999999999999
Q ss_pred HHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCC
Q 000979 707 YESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 786 (1202)
Q Consensus 707 ~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgL 786 (1202)
+||+.|+.. ...+++++++++.+++.+..++.+ +.||||||||++|||||+.+|++|+|||||+||
T Consensus 94 ~enl~~~~~---------~~~~~~~~~~l~~~gl~~~~~~~~-----~~LSgGq~qRvalaraL~~~p~llLLDEPts~L 159 (352)
T PRK11144 94 RGNLRYGMA---------KSMVAQFDKIVALLGIEPLLDRYP-----GSLSGGEKQRVAIGRALLTAPELLLMDEPLASL 159 (352)
T ss_pred HHHHHhhhh---------hhhHHHHHHHHHHcCCchhhhCCc-----ccCCHHHHHHHHHHHHHHcCCCEEEEcCCcccC
Confidence 999988632 112345789999999988777653 579999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhcceEEEEecCCEEEEEcCCC
Q 000979 787 DARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLG 842 (1202)
Q Consensus 787 D~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G~~~ 842 (1202)
|+.++..+.+.|++++++ |+|+|++||+++ ++.+++|++++|++ |+++..|+++
T Consensus 160 D~~~~~~l~~~L~~l~~~~g~tii~vTHd~~-~~~~~~d~i~~l~~-G~i~~~g~~~ 214 (352)
T PRK11144 160 DLPRKRELLPYLERLAREINIPILYVSHSLD-EILRLADRVVVLEQ-GKVKAFGPLE 214 (352)
T ss_pred CHHHHHHHHHHHHHHHHhcCCeEEEEecCHH-HHHHhCCEEEEEeC-CEEEEecCHH
Confidence 999999999999999765 899999999986 68899999999985 8999999874
|
|
| >PRK14269 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-36 Score=334.58 Aligned_cols=215 Identities=21% Similarity=0.269 Sum_probs=176.5
Q ss_pred eEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCC-ceEEEEEEEcCccC
Q 000979 604 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG-GYITGNITISGYPK 682 (1202)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~-~~~~G~i~~~g~~~ 682 (1202)
++++|+++.|+ ++.+|+|+|+++++||+++|+||||||||||+++|+|...+ .+.+|+|.++|.++
T Consensus 3 ~~~~~l~~~~~-------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i 69 (246)
T PRK14269 3 AKTTNLNLFYG-------------KKQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDV 69 (246)
T ss_pred eeeeeeEEEEC-------------CEeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEec
Confidence 57889998884 24589999999999999999999999999999999997532 24689999999876
Q ss_pred Cc---ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCc----cccccccCCCCCC
Q 000979 683 KQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP----LRQSLVGLPGVSG 755 (1202)
Q Consensus 683 ~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~----~~~~~~~~~~~~~ 755 (1202)
.. ...++.++|++|++.+++ .|++||+.+....+.... .....+++++++++.+++.+ ..+.. .+.
T Consensus 70 ~~~~~~~~~~~i~~~~q~~~l~~-~tv~eni~~~~~~~~~~~-~~~~~~~~~~~~l~~~~l~~~~~~~~~~~-----~~~ 142 (246)
T PRK14269 70 KNQDVVALRKNVGMVFQQPNVFV-KSIYENISYAPKLHGMIK-NKDEEEALVVDCLQKVGLFEEVKDKLKQN-----ALA 142 (246)
T ss_pred ccCCHHHHhhhEEEEecCCcccc-ccHHHHhhhHHhhcCccc-ChHHHHHHHHHHHHHcCCChhhhHHhcCC-----ccc
Confidence 43 234567999999998887 699999988654331100 11233445788999999853 22322 357
Q ss_pred CCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCCEE
Q 000979 756 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQE 835 (1202)
Q Consensus 756 LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~ 835 (1202)
||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++.+ |+|+|++||+++ ++.+.+|++++|++ |++
T Consensus 143 LS~G~~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~-~~~~~~d~i~~l~~-G~i 219 (246)
T PRK14269 143 LSGGQQQRLCIARALAIKPKLLLLDEPTSALDPISSGVIEELLKELSH-NLSMIMVTHNMQ-QGKRVADYTAFFHL-GEL 219 (246)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhC-CCEEEEEecCHH-HHHhhCcEEEEEEC-CEE
Confidence 999999999999999999999999999999999999999999999864 899999999986 57789999999985 899
Q ss_pred EEEcCC
Q 000979 836 IYVGPL 841 (1202)
Q Consensus 836 ~~~G~~ 841 (1202)
+..|++
T Consensus 220 ~~~g~~ 225 (246)
T PRK14269 220 IEFGES 225 (246)
T ss_pred EEECCH
Confidence 999985
|
|
| >PRK14237 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-36 Score=336.65 Aligned_cols=223 Identities=22% Similarity=0.253 Sum_probs=180.4
Q ss_pred CCceeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCC---ceEEEEEE
Q 000979 600 EPHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG---GYITGNIT 676 (1202)
Q Consensus 600 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~---~~~~G~i~ 676 (1202)
....++++|++++|+ ++++|+|+|+++++||+++|+||||||||||+++|+|...+ .+.+|+|.
T Consensus 17 ~~~~l~~~nl~~~~~-------------~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~ 83 (267)
T PRK14237 17 EEIALSTKDLHVYYG-------------KKEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQIL 83 (267)
T ss_pred CCeEEEEeeEEEEEC-------------CeeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEE
Confidence 344689999999873 24589999999999999999999999999999999997642 14689999
Q ss_pred EcCccCCc-----ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCC
Q 000979 677 ISGYPKKQ-----ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLP 751 (1202)
Q Consensus 677 ~~g~~~~~-----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~ 751 (1202)
++|.+... ...++.++|++|++.+++ .||+||+.++.... .....++.+.+++++++.+++.+..+.... .
T Consensus 84 ~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~-~ 159 (267)
T PRK14237 84 YRGIDINRKEINVYEMRKHIGMVFQRPNPFA-KSIYENITFALERA--GVKDKKVLDEIVETSLKQAALWDQVKDDLH-K 159 (267)
T ss_pred ECCEEcccccCChHHHhcceEEEecCCcccc-ccHHHHHHhHHHhc--CCCCHHHHHHHHHHHHHHcCCCchhhhhhc-C
Confidence 99987632 124567999999988887 69999998865322 111233344567888999988532111111 1
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEec
Q 000979 752 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKR 831 (1202)
Q Consensus 752 ~~~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~ 831 (1202)
..+.||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++. ++.|||++||+++ ++.+.||++++|+
T Consensus 160 ~~~~LS~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tiii~tH~~~-~~~~~~d~i~~l~- 236 (267)
T PRK14237 160 SALTLSGGQQQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELK-KNYTIIIVTHNMQ-QAARASDYTAFFY- 236 (267)
T ss_pred CcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHh-cCCEEEEEecCHH-HHHHhcCEEEEEE-
Confidence 246799999999999999999999999999999999999999999999985 4799999999986 5778999999998
Q ss_pred CCEEEEEcCCC
Q 000979 832 GGQEIYVGPLG 842 (1202)
Q Consensus 832 gG~~~~~G~~~ 842 (1202)
+|+++..|++.
T Consensus 237 ~G~i~~~g~~~ 247 (267)
T PRK14237 237 LGDLIEYDKTR 247 (267)
T ss_pred CCEEEEeCCHH
Confidence 48999999863
|
|
| >PRK14259 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-36 Score=339.38 Aligned_cols=216 Identities=22% Similarity=0.257 Sum_probs=176.3
Q ss_pred ceeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCC---ceEEEEEEEc
Q 000979 602 HSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG---GYITGNITIS 678 (1202)
Q Consensus 602 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~---~~~~G~i~~~ 678 (1202)
..++++|++++|+ ++.+|+|+||+|++||+++|+||||||||||+++|+|..++ .+.+|+|.++
T Consensus 12 ~~l~i~nl~~~~~-------------~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~ 78 (269)
T PRK14259 12 IIISLQNVTISYG-------------TFEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFD 78 (269)
T ss_pred ceEEEEeEEEEEC-------------CEEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEEC
Confidence 4589999999884 24589999999999999999999999999999999997542 1358999999
Q ss_pred CccCCc-----ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCc----ccccccc
Q 000979 679 GYPKKQ-----ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP----LRQSLVG 749 (1202)
Q Consensus 679 g~~~~~-----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~----~~~~~~~ 749 (1202)
|.++.. ...++.++|++|++.+++ .||+||+.+.+..+. ... +.++.++++++.+++.. ..+..
T Consensus 79 g~~i~~~~~~~~~~~~~i~~v~q~~~l~~-~tv~enl~~~~~~~~---~~~-~~~~~~~~~l~~~~l~~~l~~~~~~~-- 151 (269)
T PRK14259 79 GTDLYDPRVDPVEVRRRIGMVFQQPNPFP-KSIYENIAFGARING---YTG-DMDELVERSLRKAAVWDECKDKLNES-- 151 (269)
T ss_pred CEEcccccCCHHHHhhceEEEccCCccch-hhHHHHHhhhhhhcC---CcH-HHHHHHHHHHHHhCCcchhhhhhCCC--
Confidence 987531 234567999999998887 499999998764321 111 22345677888887642 23332
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEE
Q 000979 750 LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLM 829 (1202)
Q Consensus 750 ~~~~~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l 829 (1202)
+..||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||++||+++ ++.+.||++++|
T Consensus 152 ---~~~LS~G~~qrl~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~-~~tiiivtH~~~-~~~~~~d~i~~l 226 (269)
T PRK14259 152 ---GYSLSGGQQQRLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELKK-NFTIVIVTHNMQ-QAVRVSDMTAFF 226 (269)
T ss_pred ---cccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhcCEEEEE
Confidence 457999999999999999999999999999999999999999999999854 789999999986 678999999999
Q ss_pred ec----------CCEEEEEcCCC
Q 000979 830 KR----------GGQEIYVGPLG 842 (1202)
Q Consensus 830 ~~----------gG~~~~~G~~~ 842 (1202)
++ .|+++++|+++
T Consensus 227 ~~~~~~~~~~g~~g~~~~~~~~~ 249 (269)
T PRK14259 227 NAEEVEGGSGGKVGYLVEFNETK 249 (269)
T ss_pred eccccccccccccceEEEeCCHH
Confidence 85 36789999863
|
|
| >PRK14250 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-36 Score=335.00 Aligned_cols=210 Identities=25% Similarity=0.336 Sum_probs=176.0
Q ss_pred eeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccC
Q 000979 603 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 682 (1202)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 682 (1202)
.++++|++++|+ ++.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++
T Consensus 3 ~l~~~~l~~~~~-------------~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i 67 (241)
T PRK14250 3 EIEFKEVSYSSF-------------GKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLID--PTEGSILIDGVDI 67 (241)
T ss_pred eEEEEeEEEEeC-------------CeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEEh
Confidence 478899998873 2358999999999999999999999999999999999866 4589999999875
Q ss_pred Cc---ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCCCCCCCCH
Q 000979 683 KQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELN-PLRQSLVGLPGVSGLST 758 (1202)
Q Consensus 683 ~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-~~~~~~~~~~~~~~LSg 758 (1202)
.. ...++.++|++|++.+++ .|++||+.+....+ . . .+.+++++++.+++. +..++. ...|||
T Consensus 68 ~~~~~~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~---~--~--~~~~~~~~l~~~~l~~~~~~~~-----~~~LS~ 134 (241)
T PRK14250 68 KTIDVIDLRRKIGMVFQQPHLFE-GTVKDNIEYGPMLK---G--E--KNVDVEYYLSIVGLNKEYATRD-----VKNLSG 134 (241)
T ss_pred hhcChHHhhhcEEEEecCchhch-hhHHHHHhcchhhc---C--c--HHHHHHHHHHHcCCCHHHhhCC-----cccCCH
Confidence 32 234567999999988886 69999998754321 1 1 123467889999996 444543 357999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhcceEEEEecCCEEEE
Q 000979 759 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIY 837 (1202)
Q Consensus 759 GqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~ 837 (1202)
|||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||+++ ++.+.+|++++|++ |+++.
T Consensus 135 G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~~-~~~~~~d~i~~l~~-G~i~~ 212 (241)
T PRK14250 135 GEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWITHNME-QAKRIGDYTAFLNK-GILVE 212 (241)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHH-HHHHhCCEEEEEeC-CEEEE
Confidence 9999999999999999999999999999999999999999998764 899999999986 57788999999985 79999
Q ss_pred EcCCC
Q 000979 838 VGPLG 842 (1202)
Q Consensus 838 ~G~~~ 842 (1202)
.|++.
T Consensus 213 ~~~~~ 217 (241)
T PRK14250 213 YAKTY 217 (241)
T ss_pred eCCHH
Confidence 98863
|
|
| >TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-36 Score=351.88 Aligned_cols=195 Identities=23% Similarity=0.375 Sum_probs=169.7
Q ss_pred cceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCCc-------ccccceEEEeecCCCCCCCCCH
Q 000979 634 GVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ-------ETFARISGYCEQNDIHSPFVTI 706 (1202)
Q Consensus 634 ~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~-------~~~~~~~~~v~q~~~~~~~lTv 706 (1202)
|+||++++||+++|+|||||||||||++|+|..+ +.+|+|.++|.+... ...++.++|++|++.+++.+||
T Consensus 15 ~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~--p~~G~I~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv 92 (354)
T TIGR02142 15 DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTR--PDEGEIVLNGRTLFDSRKGIFLPPEKRRIGYVFQEARLFPHLSV 92 (354)
T ss_pred EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEECccCccccccchhhCCeEEEecCCccCCCCcH
Confidence 8999999999999999999999999999999876 458999999987532 1245679999999999999999
Q ss_pred HHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCC
Q 000979 707 YESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 786 (1202)
Q Consensus 707 ~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgL 786 (1202)
+||+.|+.... ...+.+++++++++.+++.+..++.. +.||||||||++|||||+.+|++|+|||||+||
T Consensus 93 ~enl~~~~~~~-----~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~LSgGqkqRvalAraL~~~p~lllLDEPts~L 162 (354)
T TIGR02142 93 RGNLRYGMKRA-----RPSERRISFERVIELLGIGHLLGRLP-----GRLSGGEKQRVAIGRALLSSPRLLLMDEPLAAL 162 (354)
T ss_pred HHHHHHHhhcc-----ChhHHHHHHHHHHHHcCChhHhcCCh-----hhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCC
Confidence 99999875321 12234456889999999988777653 579999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhcceEEEEecCCEEEEEcCCC
Q 000979 787 DARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLG 842 (1202)
Q Consensus 787 D~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G~~~ 842 (1202)
|+.++..+.+.|++++++ |+|+|++||+++ ++..++|++++|++ |+++..|+++
T Consensus 163 D~~~~~~l~~~L~~l~~~~g~tiiivtH~~~-~~~~~~d~i~~l~~-G~i~~~g~~~ 217 (354)
T TIGR02142 163 DDPRKYEILPYLERLHAEFGIPILYVSHSLQ-EVLRLADRVVVLED-GRVAAAGPIA 217 (354)
T ss_pred CHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEeC-CEEEEECCHH
Confidence 999999999999999765 899999999986 57889999999985 8999999863
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter. |
| >PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-36 Score=342.95 Aligned_cols=221 Identities=20% Similarity=0.296 Sum_probs=178.6
Q ss_pred ceeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCcc
Q 000979 602 HSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP 681 (1202)
Q Consensus 602 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 681 (1202)
..++++|++++|+... .....+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+
T Consensus 5 ~~l~i~nl~~~~~~~~--------~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~ 74 (289)
T PRK13645 5 KDIILDNVSYTYAKKT--------PFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLII--SETGQTIVGDYA 74 (289)
T ss_pred ceEEEEEEEEEeCCCC--------ccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECCEE
Confidence 3588999999884210 001348999999999999999999999999999999999876 458999999987
Q ss_pred CCc--------ccccceEEEeecCCCC-CCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCC
Q 000979 682 KKQ--------ETFARISGYCEQNDIH-SPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELN-PLRQSLVGLP 751 (1202)
Q Consensus 682 ~~~--------~~~~~~~~~v~q~~~~-~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-~~~~~~~~~~ 751 (1202)
+.. ...++.++|++|++.. +...|++||+.+..... ....++..++++++++.+++. +..++.
T Consensus 75 i~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~ll~~~~L~~~~~~~~---- 147 (289)
T PRK13645 75 IPANLKKIKEVKRLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNL---GENKQEAYKKVPELLKLVQLPEDYVKRS---- 147 (289)
T ss_pred ccccccccccHHHHhccEEEEEeCcchhhhhhHHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCChhHhcCC----
Confidence 531 2345679999999732 22369999998865322 122333445678899999994 555554
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhcceEEEEe
Q 000979 752 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMK 830 (1202)
Q Consensus 752 ~~~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~ 830 (1202)
++.||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||+++ ++.+.||++++|+
T Consensus 148 -~~~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~~-~~~~~~d~i~~l~ 225 (289)
T PRK13645 148 -PFELSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMD-QVLRIADEVIVMH 225 (289)
T ss_pred -hhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEE
Confidence 3579999999999999999999999999999999999999999999998764 899999999986 5788999999998
Q ss_pred cCCEEEEEcCCC
Q 000979 831 RGGQEIYVGPLG 842 (1202)
Q Consensus 831 ~gG~~~~~G~~~ 842 (1202)
+ |++++.|+++
T Consensus 226 ~-G~i~~~g~~~ 236 (289)
T PRK13645 226 E-GKVISIGSPF 236 (289)
T ss_pred C-CEEEEeCCHH
Confidence 5 8999998853
|
|
| >TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-36 Score=332.70 Aligned_cols=198 Identities=23% Similarity=0.381 Sum_probs=167.4
Q ss_pred eecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCCcccccceEEEeecCCCCCCCCCHHHHHH
Q 000979 632 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESLL 711 (1202)
Q Consensus 632 L~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~ 711 (1202)
|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.... ...+|++|++.+++.+||+||+.
T Consensus 1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~--~~~~~v~q~~~l~~~~tv~e~l~ 76 (230)
T TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQ--PTSGGVILEGKQITEPG--PDRMVVFQNYSLLPWLTVRENIA 76 (230)
T ss_pred CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEECCCCC--hhheEEecCcccCCCCCHHHHHH
Confidence 579999999999999999999999999999999876 45899999998764322 12489999999999999999998
Q ss_pred HHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHH
Q 000979 712 FSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA 791 (1202)
Q Consensus 712 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~ 791 (1202)
+...... .....++.+++++++++.+++.+..++.+ +.||||||||++|||+|+.+|++|+|||||+|||+.++
T Consensus 77 ~~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~ 150 (230)
T TIGR01184 77 LAVDRVL-PDLSKSERRAIVEEHIALVGLTEAADKRP-----GQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTR 150 (230)
T ss_pred HHHHhcc-cCCCHHHHHHHHHHHHHHcCCHHHHcCCh-----hhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHH
Confidence 8632111 12233344556789999999987666653 57999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhcceEEEEecCCEEEEEcCC
Q 000979 792 AIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPL 841 (1202)
Q Consensus 792 ~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G~~ 841 (1202)
..+.+.|++++++ |+|||++||+++ ++.+.+|++++|++ |+++..|++
T Consensus 151 ~~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~v~~l~~-G~i~~~~~~ 199 (230)
T TIGR01184 151 GNLQEELMQIWEEHRVTVLMVTHDVD-EALLLSDRVVMLTN-GPAANIGQI 199 (230)
T ss_pred HHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEeC-CcEecccCc
Confidence 9999999998765 899999999986 57889999999985 899988865
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase. |
| >TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-36 Score=382.19 Aligned_cols=211 Identities=28% Similarity=0.390 Sum_probs=177.9
Q ss_pred CceeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCc
Q 000979 601 PHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGY 680 (1202)
Q Consensus 601 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~ 680 (1202)
...++++||+|+|+. .++.+|+|+|++++|||.+||+||||||||||+|+|+|..+ +.+|+|.+||.
T Consensus 449 ~~~I~~~nvsf~Y~~-----------~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~--p~~G~I~idg~ 515 (686)
T TIGR03797 449 SGAIEVDRVTFRYRP-----------DGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFET--PESGSVFYDGQ 515 (686)
T ss_pred CceEEEEEEEEEcCC-----------CCccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCCEEEECCE
Confidence 346999999999952 22458999999999999999999999999999999999877 45899999999
Q ss_pred cCCc---ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCc-------cccccccC
Q 000979 681 PKKQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP-------LRQSLVGL 750 (1202)
Q Consensus 681 ~~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~-------~~~~~~~~ 750 (1202)
++++ ..+|+.++||+|++.+++ .|++||+.++. + .+++ .+.++++..++.+ -.|+.+|.
T Consensus 516 ~i~~~~~~~lr~~i~~v~Q~~~lf~-gTI~eNi~~~~----~--~~~e----~i~~al~~a~l~~~i~~lp~G~dt~ige 584 (686)
T TIGR03797 516 DLAGLDVQAVRRQLGVVLQNGRLMS-GSIFENIAGGA----P--LTLD----EAWEAARMAGLAEDIRAMPMGMHTVISE 584 (686)
T ss_pred EcCcCCHHHHHhccEEEccCCccCc-ccHHHHHhcCC----C--CCHH----HHHHHHHHcCcHHHHHhccccccccccC
Confidence 8754 457889999999999886 69999998752 1 2332 2556666666553 34677776
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEe
Q 000979 751 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 830 (1202)
Q Consensus 751 ~~~~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~ 830 (1202)
.| ..||||||||++|||||+++|++|+||||||+||+.+++.+.+.|+++ ++|+|++||+++ ..+.+|++++|+
T Consensus 585 ~G-~~LSGGQrQRialARAll~~p~iLiLDEpTS~LD~~te~~i~~~L~~~---~~T~IiItHr~~--~i~~~D~Iivl~ 658 (686)
T TIGR03797 585 GG-GTLSGGQRQRLLIARALVRKPRILLFDEATSALDNRTQAIVSESLERL---KVTRIVIAHRLS--TIRNADRIYVLD 658 (686)
T ss_pred CC-CCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHh---CCeEEEEecChH--HHHcCCEEEEEE
Confidence 54 569999999999999999999999999999999999999999999875 579999999985 567899999998
Q ss_pred cCCEEEEEcCCC
Q 000979 831 RGGQEIYVGPLG 842 (1202)
Q Consensus 831 ~gG~~~~~G~~~ 842 (1202)
+ |+++..|+.+
T Consensus 659 ~-G~iv~~G~~~ 669 (686)
T TIGR03797 659 A-GRVVQQGTYD 669 (686)
T ss_pred C-CEEEEECCHH
Confidence 5 8999999863
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif |
| >COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-37 Score=300.70 Aligned_cols=215 Identities=21% Similarity=0.304 Sum_probs=180.2
Q ss_pred eEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCC
Q 000979 604 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 683 (1202)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 683 (1202)
++.+|++..| +...+|++||++.+.|+++.|+|.|||||||+|+||.=+.. |..|.|.+||..+.
T Consensus 7 l~v~dlHK~~-------------G~~eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~--P~~G~I~v~geei~ 71 (256)
T COG4598 7 LEVEDLHKRY-------------GEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEK--PSAGSIRVNGEEIR 71 (256)
T ss_pred eehhHHHhhc-------------ccchhhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhcC--CCCceEEECCeEEE
Confidence 5566666554 44568999999999999999999999999999999987655 55899999997542
Q ss_pred c----------------ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCcccccc
Q 000979 684 Q----------------ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSL 747 (1202)
Q Consensus 684 ~----------------~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~ 747 (1202)
- ...|...|+|+|+.++++.+||.||+.-+..--+ ..++.+..++.+..++.+|+.+.+|..
T Consensus 72 ~k~~~~G~l~~ad~~q~~r~Rs~L~mVFQ~FNLWsHmtvLeNViEaPvhVL--g~~k~ea~e~Ae~~L~kVGi~ek~~~Y 149 (256)
T COG4598 72 LKRDKDGQLKPADKRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVL--GVSKAEAIERAEKYLAKVGIAEKADAY 149 (256)
T ss_pred eeeCCCCCeeeCCHHHHHHHHHHhhHhhhhcchhHHHHHHHHHHhcchHhh--cCCHHHHHHHHHHHHHHhCchhhhhcC
Confidence 1 1134457999999999999999999865422111 345556667788999999999888865
Q ss_pred ccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEE
Q 000979 748 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELF 827 (1202)
Q Consensus 748 ~~~~~~~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~ 827 (1202)
+..|||||+||++|||||+.+|+++++|||||+|||+-.-++++.+++++++|+|.+++||.+. ...+...+++
T Consensus 150 -----P~~LSGGQQQR~aIARaLameP~vmLFDEPTSALDPElVgEVLkv~~~LAeEgrTMv~VTHEM~-FAR~Vss~v~ 223 (256)
T COG4598 150 -----PAHLSGGQQQRVAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEEGRTMVVVTHEMG-FARDVSSHVI 223 (256)
T ss_pred -----ccccCchHHHHHHHHHHHhcCCceEeecCCcccCCHHHHHHHHHHHHHHHHhCCeEEEEeeehh-HHHhhhhheE
Confidence 3469999999999999999999999999999999999999999999999999999999999986 4667889999
Q ss_pred EEecCCEEEEEcCCC
Q 000979 828 LMKRGGQEIYVGPLG 842 (1202)
Q Consensus 828 ~l~~gG~~~~~G~~~ 842 (1202)
.|++ |.+-..|||+
T Consensus 224 fLh~-G~iEE~G~P~ 237 (256)
T COG4598 224 FLHQ-GKIEEEGPPE 237 (256)
T ss_pred Eeec-ceecccCChH
Confidence 9985 8999999984
|
|
| >PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-36 Score=331.92 Aligned_cols=212 Identities=22% Similarity=0.297 Sum_probs=177.3
Q ss_pred eEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCC
Q 000979 604 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 683 (1202)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 683 (1202)
++++||+++|+. + ..|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+..
T Consensus 2 l~~~~l~~~~~~-------------~--~~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~ 64 (232)
T PRK10771 2 LKLTDITWLYHH-------------L--PMRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLT--PASGSLTLNGQDHT 64 (232)
T ss_pred eEEEEEEEEECC-------------c--cceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCeecC
Confidence 578999998841 1 238999999999999999999999999999999876 45899999998764
Q ss_pred cc-cccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHH
Q 000979 684 QE-TFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRK 762 (1202)
Q Consensus 684 ~~-~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrq 762 (1202)
.. ..++.++|++|++.+++.+|+.||+.+...... .. .+..+++++++++.+++.+..++.+ +.|||||||
T Consensus 65 ~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~--~~-~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~q 136 (232)
T PRK10771 65 TTPPSRRPVSMLFQENNLFSHLTVAQNIGLGLNPGL--KL-NAAQREKLHAIARQMGIEDLLARLP-----GQLSGGQRQ 136 (232)
T ss_pred cCChhhccEEEEecccccccCCcHHHHHhccccccc--CC-CHHHHHHHHHHHHHcCcHHHHhCCc-----ccCCHHHHH
Confidence 31 234578999999999999999999987532111 11 1223456889999999987777653 579999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhcceEEEEecCCEEEEEcCC
Q 000979 763 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPL 841 (1202)
Q Consensus 763 Rv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G~~ 841 (1202)
|++|||||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|+|++||++. ++.+.+|++++|.+ |++++.|++
T Consensus 137 rv~laral~~~p~lllLDEP~~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-g~i~~~g~~ 214 (232)
T PRK10771 137 RVALARCLVREQPILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSLE-DAARIAPRSLVVAD-GRIAWDGPT 214 (232)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhCCEEEEEEC-CEEEEeCCH
Confidence 999999999999999999999999999999999999998764 899999999986 57788999999985 899999986
Q ss_pred C
Q 000979 842 G 842 (1202)
Q Consensus 842 ~ 842 (1202)
+
T Consensus 215 ~ 215 (232)
T PRK10771 215 D 215 (232)
T ss_pred H
Confidence 3
|
|
| >cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-36 Score=320.29 Aligned_cols=190 Identities=49% Similarity=0.836 Sum_probs=163.4
Q ss_pred eeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCC--CCceEEEEEEEcCc
Q 000979 603 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRK--TGGYITGNITISGY 680 (1202)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~--~~~~~~G~i~~~g~ 680 (1202)
.++++|+++.|+... ...++.+|+|+|+++++||+++|+||||||||||+++|+|.. . +.+|+|.++|.
T Consensus 3 ~l~~~~ls~~~~~~~-------~~~~~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~--~~~G~i~~~g~ 73 (194)
T cd03213 3 TLSFRNLTVTVKSSP-------SKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGL--GVSGEVLINGR 73 (194)
T ss_pred EEEEEeeEEEEecCC-------CcccccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC--CCceEEEECCE
Confidence 478999999985210 011246899999999999999999999999999999999987 5 56899999999
Q ss_pred cCCcccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHH
Q 000979 681 PKKQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQ 760 (1202)
Q Consensus 681 ~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGq 760 (1202)
+......++.++|++|++.+++.+|++||+.+...+ . .|||||
T Consensus 74 ~~~~~~~~~~i~~~~q~~~~~~~~t~~~~i~~~~~~---------------~----------------------~LS~G~ 116 (194)
T cd03213 74 PLDKRSFRKIIGYVPQDDILHPTLTVRETLMFAAKL---------------R----------------------GLSGGE 116 (194)
T ss_pred eCchHhhhheEEEccCcccCCCCCcHHHHHHHHHHh---------------c----------------------cCCHHH
Confidence 875444567899999999999999999999764210 0 499999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCCEEEEEc
Q 000979 761 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVG 839 (1202)
Q Consensus 761 rqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G 839 (1202)
|||++|||||+.+|++++|||||+|||+.+++.+.+.|++++++|+|+|+++|+++.++.+.+|++++|++ |++++.|
T Consensus 117 ~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~v~~l~~-G~i~~~~ 194 (194)
T cd03213 117 RKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQPSSEIFELFDKLLLLSQ-GRVIYFG 194 (194)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchHHHHHhcCEEEEEeC-CEEEecC
Confidence 99999999999999999999999999999999999999998777999999999986557788999999985 7888764
|
DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. |
| >cd03299 ABC_ModC_like Archeal protein closely related to ModC | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-36 Score=330.54 Aligned_cols=213 Identities=26% Similarity=0.380 Sum_probs=179.8
Q ss_pred eEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCC
Q 000979 604 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 683 (1202)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 683 (1202)
++++|+++.|. + ++|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+..
T Consensus 1 l~~~~l~~~~~------------~--~~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~--p~~G~v~i~g~~~~ 64 (235)
T cd03299 1 LKVENLSKDWK------------E--FKLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIK--PDSGKILLNGKDIT 64 (235)
T ss_pred CeeEeEEEEeC------------C--ceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcC--CCceEEEECCEEcC
Confidence 35678888763 1 26999999999999999999999999999999999876 45899999998764
Q ss_pred c-ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHH
Q 000979 684 Q-ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRK 762 (1202)
Q Consensus 684 ~-~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrq 762 (1202)
. ...++.++|++|++.+++.+|+.||+.+..... ..+..+.++.+.++++.+++.+..++.+ +.|||||||
T Consensus 65 ~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~q 136 (235)
T cd03299 65 NLPPEKRDISYVPQNYALFPHMTVYKNIAYGLKKR---KVDKKEIERKVLEIAEMLGIDHLLNRKP-----ETLSGGEQQ 136 (235)
T ss_pred cCChhHcCEEEEeecCccCCCccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhHHhcCc-----ccCCHHHHH
Confidence 3 123567999999999999999999998765332 1223344456788999999987777653 579999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhcceEEEEecCCEEEEEcCC
Q 000979 763 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPL 841 (1202)
Q Consensus 763 Rv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G~~ 841 (1202)
|++|||||+.+|++++|||||+|||+.++..+.+.|++++++ |+|+|++||++. ++.+.+|++++|++ |+++..|+.
T Consensus 137 rl~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~~~tili~tH~~~-~~~~~~d~i~~l~~-G~i~~~~~~ 214 (235)
T cd03299 137 RVAIARALVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDFE-EAWALADKVAIMLN-GKLIQVGKP 214 (235)
T ss_pred HHHHHHHHHcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEEC-CEEEEecCH
Confidence 999999999999999999999999999999999999998765 899999999986 57788999999985 899999986
Q ss_pred C
Q 000979 842 G 842 (1202)
Q Consensus 842 ~ 842 (1202)
+
T Consensus 215 ~ 215 (235)
T cd03299 215 E 215 (235)
T ss_pred H
Confidence 3
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-37 Score=380.60 Aligned_cols=211 Identities=25% Similarity=0.403 Sum_probs=176.2
Q ss_pred ceeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCcc
Q 000979 602 HSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP 681 (1202)
Q Consensus 602 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 681 (1202)
..++++||+|.++ +++++|+|+|++++|||.+||+||||||||||+++|+|.. + .+|+|.+||.+
T Consensus 348 ~~i~~~~vsf~~~------------~~~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p--~~G~I~i~g~~ 412 (588)
T PRK11174 348 VTIEAEDLEILSP------------DGKTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-P--YQGSLKINGIE 412 (588)
T ss_pred ceEEEEeeEEecc------------CCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-C--CCcEEEECCEe
Confidence 4699999998663 1245899999999999999999999999999999999987 4 37999999988
Q ss_pred CCc---ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCC-------ccccccccCC
Q 000979 682 KKQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELN-------PLRQSLVGLP 751 (1202)
Q Consensus 682 ~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-------~~~~~~~~~~ 751 (1202)
+++ ..+|+.++||+|++.+++ .|++|||.++. ++.++++ ++++++..++. +-.|+.+|..
T Consensus 413 i~~~~~~~lr~~i~~v~Q~~~LF~-~TI~eNI~~g~-----~~~~~ee----i~~al~~a~l~~~i~~lp~G~dT~vge~ 482 (588)
T PRK11174 413 LRELDPESWRKHLSWVGQNPQLPH-GTLRDNVLLGN-----PDASDEQ----LQQALENAWVSEFLPLLPQGLDTPIGDQ 482 (588)
T ss_pred cccCCHHHHHhheEEecCCCcCCC-cCHHHHhhcCC-----CCCCHHH----HHHHHHHhCHHHHHHhcccccccccccC
Confidence 654 457889999999999886 69999999852 2334333 44455554443 3457888876
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEec
Q 000979 752 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKR 831 (1202)
Q Consensus 752 ~~~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~ 831 (1202)
| ..||||||||++|||||+++|+||+||||||+||+.+++.+.+.|+++. +++|+|++||+++ ..+.+|++++|++
T Consensus 483 G-~~LSGGQrQRialARAll~~~~IliLDE~TSaLD~~te~~i~~~l~~~~-~~~TvIiItHrl~--~i~~aD~Iivl~~ 558 (588)
T PRK11174 483 A-AGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAAS-RRQTTLMVTHQLE--DLAQWDQIWVMQD 558 (588)
T ss_pred C-CCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh-CCCEEEEEecChH--HHHhCCEEEEEeC
Confidence 5 4699999999999999999999999999999999999999999999874 5899999999985 5678999999984
Q ss_pred CCEEEEEcCCC
Q 000979 832 GGQEIYVGPLG 842 (1202)
Q Consensus 832 gG~~~~~G~~~ 842 (1202)
|+++..|+.+
T Consensus 559 -G~i~e~G~~~ 568 (588)
T PRK11174 559 -GQIVQQGDYA 568 (588)
T ss_pred -CeEeecCCHH
Confidence 8999999853
|
|
| >TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-36 Score=326.38 Aligned_cols=189 Identities=23% Similarity=0.370 Sum_probs=161.5
Q ss_pred eEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCC---c----ccccceEEEeecCCCCC
Q 000979 629 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK---Q----ETFARISGYCEQNDIHS 701 (1202)
Q Consensus 629 ~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~---~----~~~~~~~~~v~q~~~~~ 701 (1202)
+.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++. . ...++.++|++|++.++
T Consensus 11 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~ 88 (206)
T TIGR03608 11 KIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEK--FDSGQVYLNGKETPPLNSKKASKFRREKLGYLFQNFALI 88 (206)
T ss_pred EEEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCC--CCCeEEEECCEEccccchhhHHHHHHhCeeEEecchhhc
Confidence 458999999999999999999999999999999999876 45899999998742 1 12356799999999999
Q ss_pred CCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeC
Q 000979 702 PFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDE 781 (1202)
Q Consensus 702 ~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~illlDE 781 (1202)
+.+|++||+.+..... .....+..++++++++.+++.+..++.+ ++||||||||++|||||+.+|++|+|||
T Consensus 89 ~~~t~~e~~~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~lS~G~~qr~~laral~~~p~llllDE 160 (206)
T TIGR03608 89 ENETVEENLDLGLKYK---KLSKKEKREKKKEALEKVGLNLKLKQKI-----YELSGGEQQRVALARAILKDPPLILADE 160 (206)
T ss_pred cCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCchhhhcCCh-----hhCCHHHHHHHHHHHHHHcCCCEEEEeC
Confidence 9999999999865432 1223334556789999999987777653 5799999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEE
Q 000979 782 PTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLM 829 (1202)
Q Consensus 782 PtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l 829 (1202)
||+|||+.++..+.+.|+++.++|.|+|++||++. ..+.+|++++|
T Consensus 161 Pt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~--~~~~~d~i~~l 206 (206)
T TIGR03608 161 PTGSLDPKNRDEVLDLLLELNDEGKTIIIVTHDPE--VAKQADRVIEL 206 (206)
T ss_pred CcCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH--HHhhcCEEEeC
Confidence 99999999999999999998777999999999985 45789999875
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins. |
| >PRK14274 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-36 Score=335.42 Aligned_cols=220 Identities=19% Similarity=0.252 Sum_probs=177.1
Q ss_pred eeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCC--Cc-eEEEEEEEcC
Q 000979 603 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKT--GG-YITGNITISG 679 (1202)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~--~~-~~~G~i~~~g 679 (1202)
.++++|+++.|+ ++.+|+|+||+|++||+++|+||||||||||+++|+|... +. +.+|+|.++|
T Consensus 12 ~l~i~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g 78 (259)
T PRK14274 12 VYQINGMNLWYG-------------QHHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNG 78 (259)
T ss_pred eEEEeeEEEEEC-------------CeeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECC
Confidence 488999999874 2358999999999999999999999999999999999754 21 2479999999
Q ss_pred ccCCc-----ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCC
Q 000979 680 YPKKQ-----ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVS 754 (1202)
Q Consensus 680 ~~~~~-----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~ 754 (1202)
.++.. ...++.++|++|++.+++. ||+||+.+...... ....++.+++++++++.+++.+....... ...+
T Consensus 79 ~~~~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~l~-~~~~ 154 (259)
T PRK14274 79 SNILKGKVDLVELRKNIGMVFQKGNPFPQ-SIFDNVAYGPRIHG--TKNKKKLQEIVEKSLKDVALWDEVKDRLH-TQAL 154 (259)
T ss_pred EEccccccCHHHHhhceEEEecCCccccc-CHHHHHHhHHHhcC--CCCHHHHHHHHHHHHHHcCCchhhhhhhh-CCcc
Confidence 87632 2345679999999988875 99999988653321 11223334557788999888532111111 1245
Q ss_pred CCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCCE
Q 000979 755 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQ 834 (1202)
Q Consensus 755 ~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~ 834 (1202)
+||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|+|++||+++ ++.+.+||+++|++ |+
T Consensus 155 ~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivtH~~~-~~~~~~d~i~~l~~-G~ 231 (259)
T PRK14274 155 SLSGGQQQRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKE-KYTIVIVTHNMQ-QAARVSDQTAFFYM-GE 231 (259)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEEcCHH-HHHHhCCEEEEEEC-CE
Confidence 7999999999999999999999999999999999999999999999864 799999999986 57789999999984 89
Q ss_pred EEEEcCCC
Q 000979 835 EIYVGPLG 842 (1202)
Q Consensus 835 ~~~~G~~~ 842 (1202)
++..|+++
T Consensus 232 i~~~g~~~ 239 (259)
T PRK14274 232 LVECNDTN 239 (259)
T ss_pred EEEECCHH
Confidence 99999863
|
|
| >PRK14270 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-36 Score=333.79 Aligned_cols=216 Identities=21% Similarity=0.234 Sum_probs=177.5
Q ss_pred eeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCc---eEEEEEEEcC
Q 000979 603 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG---YITGNITISG 679 (1202)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~---~~~G~i~~~g 679 (1202)
.++++|+++.|+ ++.+|+|+|+++++||+++|+||||||||||+++|+|..++. +.+|+|.++|
T Consensus 4 ~l~~~~l~~~~~-------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g 70 (251)
T PRK14270 4 KMESKNLNLWYG-------------EKQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDG 70 (251)
T ss_pred EEEEEEeEEEEC-------------CeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECC
Confidence 478899998873 245899999999999999999999999999999999975431 2579999999
Q ss_pred ccCCc-----ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCc----cccccccC
Q 000979 680 YPKKQ-----ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP----LRQSLVGL 750 (1202)
Q Consensus 680 ~~~~~-----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~----~~~~~~~~ 750 (1202)
.++.. ...++.++|++|++.+++ .|++||+.+...... ....++.+++++++++.+++.+ ..+..
T Consensus 71 ~~i~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~--- 144 (251)
T PRK14270 71 KNIYDKDVDVVELRKRVGMVFQKPNPFP-MSIYDNVAYGPRIHG--IKDKKELDKIVEWALKKAALWDEVKDDLKKS--- 144 (251)
T ss_pred EecccccccHHHHHhheEEEecCCCcCC-CcHHHHHHhHHHhcC--CCcHHHHHHHHHHHHHHcCCchhhhhHhhCC---
Confidence 87632 123567999999998887 899999998654321 1122334456778899998742 22332
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEe
Q 000979 751 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 830 (1202)
Q Consensus 751 ~~~~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~ 830 (1202)
.+.||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|+|++||+++ ++.+.+||+++|+
T Consensus 145 --~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~-~~tiiivsH~~~-~~~~~~d~v~~l~ 220 (251)
T PRK14270 145 --ALKLSGGQQQRLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKK-EYTIVIVTHNMQ-QASRVSDYTAFFL 220 (251)
T ss_pred --cccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCeEEEEEcCHH-HHHHhcCEEEEEE
Confidence 457999999999999999999999999999999999999999999999866 689999999986 5788899999998
Q ss_pred cCCEEEEEcCCC
Q 000979 831 RGGQEIYVGPLG 842 (1202)
Q Consensus 831 ~gG~~~~~G~~~ 842 (1202)
+ |+++..|+++
T Consensus 221 ~-G~i~~~~~~~ 231 (251)
T PRK14270 221 M-GDLIEFNKTE 231 (251)
T ss_pred C-CeEEEeCCHH
Confidence 5 8999999864
|
|
| >PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-36 Score=337.59 Aligned_cols=225 Identities=20% Similarity=0.253 Sum_probs=180.7
Q ss_pred eeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccC
Q 000979 603 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 682 (1202)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 682 (1202)
.++++||+++|..+... ...+.+++|+|+|+++++||+++|+|||||||||||++|+|..+ +.+|+|.++|.++
T Consensus 4 ~l~~~~l~~~~~~~~~~----~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~ 77 (267)
T PRK15112 4 LLEVRNLSKTFRYRTGW----FRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIE--PTSGELLIDDHPL 77 (267)
T ss_pred eEEEeceEEEecCCCCc----ccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCC--CCCCEEEECCEEC
Confidence 37899999988421100 00112468999999999999999999999999999999999876 4589999999876
Q ss_pred Cc---ccccceEEEeecCCC--CCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCCCCCCC
Q 000979 683 KQ---ETFARISGYCEQNDI--HSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELN-PLRQSLVGLPGVSGL 756 (1202)
Q Consensus 683 ~~---~~~~~~~~~v~q~~~--~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-~~~~~~~~~~~~~~L 756 (1202)
.. ...++.++|++|++. +++.+|+.|++.+...... .....+.++.++++++.+++. +..+.. +..|
T Consensus 78 ~~~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~~L 150 (267)
T PRK15112 78 HFGDYSYRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNT--DLEPEQREKQIIETLRQVGLLPDHASYY-----PHML 150 (267)
T ss_pred CCCchhhHhccEEEEecCchhhcCcchhHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHHcCCChHHHhcC-----chhc
Confidence 42 123456899999875 5678899999987654321 122333445678999999994 444543 3579
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhcceEEEEecCCEE
Q 000979 757 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQE 835 (1202)
Q Consensus 757 SgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~ 835 (1202)
|||||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||+++ ++.+.||++++|+ +|++
T Consensus 151 S~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tviivsH~~~-~~~~~~d~i~~l~-~G~i 228 (267)
T PRK15112 151 APGQKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHLG-MMKHISDQVLVMH-QGEV 228 (267)
T ss_pred CHHHHHHHHHHHHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHH-HHHHhcCEEEEEE-CCEE
Confidence 999999999999999999999999999999999999999999999764 899999999986 5778899999998 4899
Q ss_pred EEEcCCC
Q 000979 836 IYVGPLG 842 (1202)
Q Consensus 836 ~~~G~~~ 842 (1202)
+..|+++
T Consensus 229 ~~~~~~~ 235 (267)
T PRK15112 229 VERGSTA 235 (267)
T ss_pred EecCCHH
Confidence 9988753
|
|
| >cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-36 Score=326.13 Aligned_cols=191 Identities=25% Similarity=0.385 Sum_probs=163.2
Q ss_pred cceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCCc-------ccccceEEEeecCCCCCCCCCH
Q 000979 634 GVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ-------ETFARISGYCEQNDIHSPFVTI 706 (1202)
Q Consensus 634 ~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~-------~~~~~~~~~v~q~~~~~~~lTv 706 (1202)
|+||++++ |+++|+||||||||||+++|+|..+ +.+|+|.++|.+... ...++.++|++|++.+++.+|+
T Consensus 16 ~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~ 92 (214)
T cd03297 16 KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEK--PDGGTIVLNGTVLFDSRKKINLPPQQRKIGLVFQQYALFPHLNV 92 (214)
T ss_pred CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEecccccchhhhhhHhhcEEEEecCCccCCCCCH
Confidence 99999999 9999999999999999999999876 458999999987531 1235679999999999999999
Q ss_pred HHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCC
Q 000979 707 YESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 786 (1202)
Q Consensus 707 ~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgL 786 (1202)
+||+.+..... .....+++++++++.+++.+..+.. +..||||||||++|||||+.+|++|+|||||+||
T Consensus 93 ~~~l~~~~~~~-----~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrv~la~al~~~p~llllDEPt~~L 162 (214)
T cd03297 93 RENLAFGLKRK-----RNREDRISVDELLDLLGLDHLLNRY-----PAQLSGGEKQRVALARALAAQPELLLLDEPFSAL 162 (214)
T ss_pred HHHHHHHHhhC-----CHHHHHHHHHHHHHHcCCHhHhhcC-----cccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccC
Confidence 99998764321 2223345678899999998766654 3579999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhcceEEEEecCCEEEEEc
Q 000979 787 DARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVG 839 (1202)
Q Consensus 787 D~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G 839 (1202)
|+.+++.+.+.|++++++ |+|||++||+++ ++.+.+|++++|++ |+++..|
T Consensus 163 D~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-G~i~~~g 214 (214)
T cd03297 163 DRALRLQLLPELKQIKKNLNIPVIFVTHDLS-EAEYLADRIVVMED-GRLQYIG 214 (214)
T ss_pred CHHHHHHHHHHHHHHHHHcCcEEEEEecCHH-HHHHhcCEEEEEEC-CEEEecC
Confidence 999999999999999765 899999999986 57788999999985 7888765
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14239 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-36 Score=333.46 Aligned_cols=216 Identities=26% Similarity=0.301 Sum_probs=175.9
Q ss_pred eeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCC--Cc-eEEEEEEEcC
Q 000979 603 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKT--GG-YITGNITISG 679 (1202)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~--~~-~~~G~i~~~g 679 (1202)
.++++|++++|. ++.+|+|+||++++||+++|+||||||||||+++|+|... +. +.+|+|.++|
T Consensus 5 ~l~~~~l~~~~~-------------~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g 71 (252)
T PRK14239 5 ILQVSDLSVYYN-------------KKKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNG 71 (252)
T ss_pred eEEEEeeEEEEC-------------CeeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECC
Confidence 478999999874 2358999999999999999999999999999999999732 21 2479999999
Q ss_pred ccCCc-----ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCc----cccccccC
Q 000979 680 YPKKQ-----ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP----LRQSLVGL 750 (1202)
Q Consensus 680 ~~~~~-----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~----~~~~~~~~ 750 (1202)
.++.. ..+++.++|++|++.+++ .||+||+.+....+. ....+..++.++++++.+++.+ ..+..
T Consensus 72 ~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~--- 145 (252)
T PRK14239 72 HNIYSPRTDTVDLRKEIGMVFQQPNPFP-MSIYENVVYGLRLKG--IKDKQVLDEAVEKSLKGASIWDEVKDRLHDS--- 145 (252)
T ss_pred EECcCcccchHhhhhcEEEEecCCccCc-CcHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHHcCCchhHHHHHhcC---
Confidence 87632 234567999999998887 899999988654321 1122233455778888888743 22332
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEe
Q 000979 751 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 830 (1202)
Q Consensus 751 ~~~~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~ 830 (1202)
++.||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++.+ ++|||++||+++ ++.+.+||+++|+
T Consensus 146 --~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~~-~~~~~~d~i~~l~ 221 (252)
T PRK14239 146 --ALGLSGGQQQRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKD-DYTMLLVTRSMQ-QASRISDRTGFFL 221 (252)
T ss_pred --cccCCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHhh-CCeEEEEECCHH-HHHHhCCEEEEEE
Confidence 457999999999999999999999999999999999999999999999865 689999999986 5788999999998
Q ss_pred cCCEEEEEcCCC
Q 000979 831 RGGQEIYVGPLG 842 (1202)
Q Consensus 831 ~gG~~~~~G~~~ 842 (1202)
+ |++++.|+.+
T Consensus 222 ~-G~i~~~g~~~ 232 (252)
T PRK14239 222 D-GDLIEYNDTK 232 (252)
T ss_pred C-CEEEEeCCHH
Confidence 5 8999999863
|
|
| >PRK14240 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-36 Score=332.02 Aligned_cols=215 Identities=21% Similarity=0.289 Sum_probs=176.0
Q ss_pred eeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCc---eEEEEEEEcC
Q 000979 603 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG---YITGNITISG 679 (1202)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~---~~~G~i~~~g 679 (1202)
.++++||++.|+ ++.+|+|+||++++||+++|+||||||||||+++|+|..++. +.+|+|.++|
T Consensus 3 ~l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g 69 (250)
T PRK14240 3 KISVKDLDLFYG-------------DFQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDG 69 (250)
T ss_pred eEEEEEEEEEEC-------------CceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECC
Confidence 478999999874 135899999999999999999999999999999999964321 2579999999
Q ss_pred ccCCc-----ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCc----cccccccC
Q 000979 680 YPKKQ-----ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP----LRQSLVGL 750 (1202)
Q Consensus 680 ~~~~~-----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~----~~~~~~~~ 750 (1202)
.++.. ...++.++|++|++.+++ +|++||+.+...... ....++.++.++++++.+++.+ ..++.
T Consensus 70 ~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~t~~~ni~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~--- 143 (250)
T PRK14240 70 QDIYKSDIDVNQLRKRVGMVFQQPNPFP-MSIYDNVAYGPRTHG--IKDKKKLDEIVEKSLKGAALWDEVKDRLKKS--- 143 (250)
T ss_pred EEccccccchHHHhccEEEEecCCccCc-ccHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHcCCchhhHHHHhcC---
Confidence 87642 134567999999988887 899999998654321 1122333456778888888742 22332
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEe
Q 000979 751 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 830 (1202)
Q Consensus 751 ~~~~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~ 830 (1202)
+..||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++. +++|||++||+++ .+.+.+|++++|+
T Consensus 144 --~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~~~tiii~sH~~~-~~~~~~d~v~~l~ 219 (250)
T PRK14240 144 --ALGLSGGQQQRLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELK-KDYTIVIVTHNMQ-QASRISDKTAFFL 219 (250)
T ss_pred --CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEEeCHH-HHHhhCCEEEEEE
Confidence 45799999999999999999999999999999999999999999999985 4899999999986 5778899999998
Q ss_pred cCCEEEEEcCC
Q 000979 831 RGGQEIYVGPL 841 (1202)
Q Consensus 831 ~gG~~~~~G~~ 841 (1202)
+ |+++..|++
T Consensus 220 ~-G~i~~~~~~ 229 (250)
T PRK14240 220 N-GEIVEFGDT 229 (250)
T ss_pred C-CEEEEeCCH
Confidence 5 899999875
|
|
| >PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-36 Score=338.87 Aligned_cols=217 Identities=24% Similarity=0.316 Sum_probs=181.1
Q ss_pred eeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccC
Q 000979 603 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 682 (1202)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 682 (1202)
.++++|++++|+. ..++.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++
T Consensus 4 ~l~~~~l~~~~~~----------~~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~i 71 (277)
T PRK13642 4 ILEVENLVFKYEK----------ESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFE--EFEGKVKIDGELL 71 (277)
T ss_pred eEEEEEEEEEcCC----------CCcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC--CCCCEEEECCEEC
Confidence 4789999998841 112358999999999999999999999999999999999876 4589999999876
Q ss_pred Cc---ccccceEEEeecCCC-CCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCH
Q 000979 683 KQ---ETFARISGYCEQNDI-HSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLST 758 (1202)
Q Consensus 683 ~~---~~~~~~~~~v~q~~~-~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSg 758 (1202)
.. ...++.++|++|++. .++..||.||+.+..... ....++..++++++++.+++.+..++. +..|||
T Consensus 72 ~~~~~~~~~~~i~~v~q~~~~~~~~~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~ 143 (277)
T PRK13642 72 TAENVWNLRRKIGMVFQNPDNQFVGATVEDDVAFGMENQ---GIPREEMIKRVDEALLAVNMLDFKTRE-----PARLSG 143 (277)
T ss_pred CcCCHHHHhcceEEEEECHHHhhccCCHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHCCCHhHhhCC-----cccCCH
Confidence 43 234677999999974 567789999998765322 123334445678999999998776664 357999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhcceEEEEecCCEEEE
Q 000979 759 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIY 837 (1202)
Q Consensus 759 GqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~ 837 (1202)
|||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||+++ ++ ..+|++++|++ |+++.
T Consensus 144 G~~qrv~lAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~-~~-~~~d~i~~l~~-G~i~~ 220 (277)
T PRK13642 144 GQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLD-EA-ASSDRILVMKA-GEIIK 220 (277)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HH-HhCCEEEEEEC-CEEEE
Confidence 9999999999999999999999999999999999999999999765 999999999986 34 46999999985 79999
Q ss_pred EcCCC
Q 000979 838 VGPLG 842 (1202)
Q Consensus 838 ~G~~~ 842 (1202)
.|+++
T Consensus 221 ~g~~~ 225 (277)
T PRK13642 221 EAAPS 225 (277)
T ss_pred eCCHH
Confidence 99863
|
|
| >PRK14260 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-36 Score=334.64 Aligned_cols=217 Identities=21% Similarity=0.283 Sum_probs=178.0
Q ss_pred eeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCc-e--EEEEEEEcC
Q 000979 603 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG-Y--ITGNITISG 679 (1202)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~-~--~~G~i~~~g 679 (1202)
.++++|+++.|. ++.+|+|+|+++++||+++|+|+||||||||+++|+|..++. + .+|+|.++|
T Consensus 7 ~l~~~~l~~~~~-------------~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g 73 (259)
T PRK14260 7 AIKVKDLSFYYN-------------TSKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFG 73 (259)
T ss_pred eEEEEEEEEEEC-------------CeEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECC
Confidence 478999999874 235899999999999999999999999999999999975532 2 479999999
Q ss_pred ccCCc-----ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCc----cccccccC
Q 000979 680 YPKKQ-----ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP----LRQSLVGL 750 (1202)
Q Consensus 680 ~~~~~-----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~----~~~~~~~~ 750 (1202)
.++.. ...++.++|++|++.+++ .|++||+.+....+. .....+.++.++++++.+++.+ ..++.
T Consensus 74 ~~i~~~~~~~~~~~~~i~~v~q~~~l~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~--- 147 (259)
T PRK14260 74 QNIYDPRININRLRRQIGMVFQRPNPFP-MSIYENVAYGVRISA--KLPQADLDEIVESALKGAALWQEVKDKLNKS--- 147 (259)
T ss_pred EeccccccchHhhhhheEEEecccccCC-ccHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCCcchhhhHhcCC---
Confidence 87532 234567999999998887 899999988654321 1122333455778888888742 23332
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEe
Q 000979 751 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 830 (1202)
Q Consensus 751 ~~~~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~ 830 (1202)
+..||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||++||+++ ++.+.+|++++|+
T Consensus 148 --~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~-~i~~~~d~i~~l~ 223 (259)
T PRK14260 148 --ALGLSGGQQQRLCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHSLRS-ELTIAIVTHNMQ-QATRVSDFTAFFS 223 (259)
T ss_pred --cccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhcCeEEEEe
Confidence 457999999999999999999999999999999999999999999999865 699999999987 6888999999997
Q ss_pred c----CCEEEEEcCCC
Q 000979 831 R----GGQEIYVGPLG 842 (1202)
Q Consensus 831 ~----gG~~~~~G~~~ 842 (1202)
+ +|+++..|++.
T Consensus 224 ~~~~~~G~i~~~~~~~ 239 (259)
T PRK14260 224 TDESRIGQMVEFGVTT 239 (259)
T ss_pred ccCCCCceEEEeCCHH
Confidence 3 48999999863
|
|
| >PRK10762 D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-36 Score=366.92 Aligned_cols=220 Identities=26% Similarity=0.322 Sum_probs=185.2
Q ss_pred eeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccC
Q 000979 603 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 682 (1202)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 682 (1202)
-++++|++++|. ++++|+|+||++++||+++|+||||||||||||+|+|..+ +.+|+|.++|.+.
T Consensus 4 ~i~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~--p~~G~i~~~g~~~ 68 (501)
T PRK10762 4 LLQLKGIDKAFP-------------GVKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYT--RDAGSILYLGKEV 68 (501)
T ss_pred eEEEeeeEEEeC-------------CeEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEEC
Confidence 378899998873 2468999999999999999999999999999999999876 4589999999876
Q ss_pred Ccc----cccceEEEeecCCCCCCCCCHHHHHHHHHHccCC-CCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCC
Q 000979 683 KQE----TFARISGYCEQNDIHSPFVTIYESLLFSAWLRLS-PEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLS 757 (1202)
Q Consensus 683 ~~~----~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~-~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LS 757 (1202)
... ..++.++|++|++.+++.+||+||+.++...+.. ...+.++.+++++++++.+++.+..++.+ ..||
T Consensus 69 ~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS 143 (501)
T PRK10762 69 TFNGPKSSQEAGIGIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFSSDKLV-----GELS 143 (501)
T ss_pred CCCCHHHHHhCCEEEEEcchhccCCCcHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCCCccCch-----hhCC
Confidence 321 1245689999999999999999999886432210 11223334456889999999988777654 4799
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCCEEEE
Q 000979 758 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIY 837 (1202)
Q Consensus 758 gGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~ 837 (1202)
||||||++|||||+.+|++|||||||+|||+.++..+.+.|++++++|.|||++||+++ ++.+.||++++|++ |+++.
T Consensus 144 gG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvii~sHd~~-~~~~~~d~i~~l~~-G~i~~ 221 (501)
T PRK10762 144 IGEQQMVEIAKVLSFESKVIIMDEPTDALTDTETESLFRVIRELKSQGRGIVYISHRLK-EIFEICDDVTVFRD-GQFIA 221 (501)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEeC-CEEEE
Confidence 99999999999999999999999999999999999999999999877999999999986 57789999999985 89999
Q ss_pred EcCCCcc
Q 000979 838 VGPLGRH 844 (1202)
Q Consensus 838 ~G~~~~~ 844 (1202)
.|++.+.
T Consensus 222 ~~~~~~~ 228 (501)
T PRK10762 222 EREVADL 228 (501)
T ss_pred ecCcCcC
Confidence 9998653
|
|
| >PRK14257 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-36 Score=341.32 Aligned_cols=222 Identities=18% Similarity=0.229 Sum_probs=180.3
Q ss_pred ceeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCC---ceEEEEEEEc
Q 000979 602 HSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG---GYITGNITIS 678 (1202)
Q Consensus 602 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~---~~~~G~i~~~ 678 (1202)
..++++|++++|.. +.+.+|+|+||+|++||++||+||||||||||+++|+|.... .+.+|+|.++
T Consensus 79 ~~i~~~nls~~y~~-----------~~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~id 147 (329)
T PRK14257 79 NVFEIRNFNFWYMN-----------RTKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFL 147 (329)
T ss_pred ceEEEEeeEEEecC-----------CCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEEC
Confidence 46899999999841 224589999999999999999999999999999999997532 2457999999
Q ss_pred CccCCc-----ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCH-HHHHHHHHHHHHHcCCCccccccccCCC
Q 000979 679 GYPKKQ-----ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDS-ETRKMFIDEVMELVELNPLRQSLVGLPG 752 (1202)
Q Consensus 679 g~~~~~-----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~-~~~~~~~~~~l~~l~l~~~~~~~~~~~~ 752 (1202)
|.++.. ...++.++||+|++.+++ .|++||+.|+.... .... +..++.++++++.+++.+..++.++..
T Consensus 148 G~~i~~~~~~~~~lr~~i~~v~q~~~~~~-~ti~eNi~~~~~~~---~~~~~~~~~~~~~~~l~~~~L~~~l~~~~~~~- 222 (329)
T PRK14257 148 GTNTRSKKISSLELRTRIGMVFQKPTPFE-MSIFDNVAYGPRNN---GINDRKILEKIVEKSLKSAALWDEVKDDLDKA- 222 (329)
T ss_pred CEEccccccchHhhhccEEEEecCCccCC-CcHHHHHHhHHHhc---CCChHHHHHHHHHHHHHHcCCcchhhhhhhCC-
Confidence 998742 235678999999998875 79999999865322 1222 222344678888888754333333332
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecC
Q 000979 753 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 832 (1202)
Q Consensus 753 ~~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~g 832 (1202)
...||||||||++|||||+.+|+||+|||||+|||+.+...+.+.|+++.+ ++|+|++||++. .+.+.+||+++|++
T Consensus 223 ~~~LSgGqkqRl~LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~-~~Tii~iTH~l~-~i~~~~Driivl~~- 299 (329)
T PRK14257 223 GNALSGGQQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKK-KYSIIIVTHSMA-QAQRISDETVFFYQ- 299 (329)
T ss_pred cccCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhCCEEEEEEC-
Confidence 457999999999999999999999999999999999999999999999865 799999999986 56778999999985
Q ss_pred CEEEEEcCCC
Q 000979 833 GQEIYVGPLG 842 (1202)
Q Consensus 833 G~~~~~G~~~ 842 (1202)
|+++..|++.
T Consensus 300 G~i~e~g~~~ 309 (329)
T PRK14257 300 GWIEEAGETK 309 (329)
T ss_pred CEEEEeCCHH
Confidence 8999999974
|
|
| >TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-36 Score=378.83 Aligned_cols=212 Identities=25% Similarity=0.391 Sum_probs=177.0
Q ss_pred CceeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCc
Q 000979 601 PHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGY 680 (1202)
Q Consensus 601 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~ 680 (1202)
...++++||+|+|+. ++.+|+|+|+++++||.+||+||||||||||+++|+|..+ +.+|+|.+||.
T Consensus 471 ~~~I~~~~vsf~y~~------------~~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~--p~~G~I~idg~ 536 (708)
T TIGR01193 471 NGDIVINDVSYSYGY------------GSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQ--ARSGEILLNGF 536 (708)
T ss_pred CCcEEEEEEEEEcCC------------CCcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCC--CCCcEEEECCE
Confidence 457999999999951 2358999999999999999999999999999999999877 45899999998
Q ss_pred cCCc---ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCC-------ccccccccC
Q 000979 681 PKKQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELN-------PLRQSLVGL 750 (1202)
Q Consensus 681 ~~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-------~~~~~~~~~ 750 (1202)
++++ ..+|+.++||+|++.+++ .|++||+.++.. ++.++++ +.++++..++. .-.|+.+|.
T Consensus 537 ~i~~~~~~~lr~~i~~v~Q~~~lf~-gTI~eNi~l~~~----~~~~~~~----i~~a~~~a~l~~~i~~lp~gldt~i~e 607 (708)
T TIGR01193 537 SLKDIDRHTLRQFINYLPQEPYIFS-GSILENLLLGAK----ENVSQDE----IWAACEIAEIKDDIENMPLGYQTELSE 607 (708)
T ss_pred EHHHcCHHHHHHheEEEecCceehh-HHHHHHHhccCC----CCCCHHH----HHHHHHHhCCHHHHHhcccccCcEecC
Confidence 7643 457889999999999886 599999987521 1233322 44555555543 345777776
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEe
Q 000979 751 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 830 (1202)
Q Consensus 751 ~~~~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~ 830 (1202)
.+ ..||||||||++|||||+++|++|+||||||+||+.+++.+++.|+++ +|+|+|++||+++ ..+.+|++++|+
T Consensus 608 ~G-~~LSgGQrQRialARall~~p~iliLDE~Ts~LD~~te~~i~~~L~~~--~~~T~IiitHr~~--~~~~~D~i~~l~ 682 (708)
T TIGR01193 608 EG-SSISGGQKQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNLLNL--QDKTIIFVAHRLS--VAKQSDKIIVLD 682 (708)
T ss_pred CC-CCCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHh--cCCEEEEEecchH--HHHcCCEEEEEE
Confidence 54 569999999999999999999999999999999999999999999875 4799999999985 568899999998
Q ss_pred cCCEEEEEcCC
Q 000979 831 RGGQEIYVGPL 841 (1202)
Q Consensus 831 ~gG~~~~~G~~ 841 (1202)
+ |+++..|+.
T Consensus 683 ~-G~i~~~G~~ 692 (708)
T TIGR01193 683 H-GKIIEQGSH 692 (708)
T ss_pred C-CEEEEECCH
Confidence 5 899999985
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc. |
| >COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-35 Score=337.59 Aligned_cols=202 Identities=20% Similarity=0.369 Sum_probs=168.5
Q ss_pred eecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCCcc----cccceEEEeecC---CCCCCCC
Q 000979 632 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQE----TFARISGYCEQN---DIHSPFV 704 (1202)
Q Consensus 632 L~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~----~~~~~~~~v~q~---~~~~~~l 704 (1202)
++|+||++++||+++|-|-=|||+|-|+++|.|..+ ..+|+|.+||++.... ..+..++|||.| +.+++.+
T Consensus 275 ~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~~--~~~G~i~l~G~~v~~~sp~~Ai~~Gi~~v~EDRk~~Gl~l~~ 352 (500)
T COG1129 275 VRDVSFTVRAGEILGIAGLVGAGRTELARALFGARP--ASSGEILLDGKPVRIRSPRDAIKAGIAYVPEDRKSEGLVLDM 352 (500)
T ss_pred eeCceeEEeCCcEEEEeccccCCHHHHHHHHhCCCc--CCCceEEECCEEccCCCHHHHHHcCCEeCCcccccCcCcCCC
Confidence 789999999999999999999999999999999655 3489999999986542 345678999987 4678899
Q ss_pred CHHHHHHHHHHccCCC--CCCHHHHHHHHHHHHHHcCCCccc-cccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeC
Q 000979 705 TIYESLLFSAWLRLSP--EVDSETRKMFIDEVMELVELNPLR-QSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDE 781 (1202)
Q Consensus 705 Tv~e~l~~~~~~~~~~--~~~~~~~~~~~~~~l~~l~l~~~~-~~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~illlDE 781 (1202)
+|+||+.++...+... -.+....++.+++..+.+++.... +.. +..||||.+|||.|||.|..+|+||+|||
T Consensus 353 sI~~Ni~l~~l~~~~~~~~i~~~~e~~~~~~~~~~l~Ik~~s~~~~-----v~~LSGGNQQKVvlarwL~~~p~vLilDE 427 (500)
T COG1129 353 SIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPSPEQP-----IGTLSGGNQQKVVLARWLATDPKVLILDE 427 (500)
T ss_pred cHHHheehHhhhhhccccccChHHHHHHHHHHHHhcCcccCCccch-----hhcCCchhhhhHHHHHHHhcCCCEEEECC
Confidence 9999998873222111 234444556788899999885332 222 45799999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCCEEEEEcCCC
Q 000979 782 PTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLG 842 (1202)
Q Consensus 782 PtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G~~~ 842 (1202)
||.|.|.-++.+|.++|++++++|++||+++-++. |+..+||||++|++ |+++..=+.+
T Consensus 428 PTRGIDVGAK~eIy~li~~lA~~G~ail~iSSElp-Ell~~~DRIlVm~~-Gri~~e~~~~ 486 (500)
T COG1129 428 PTRGIDVGAKAEIYRLIRELAAEGKAILMISSELP-ELLGLSDRILVMRE-GRIVGELDRE 486 (500)
T ss_pred CCcCcccchHHHHHHHHHHHHHCCCEEEEEeCChH-HHHhhCCEEEEEEC-CEEEEEeccc
Confidence 99999999999999999999999999999999985 89999999999985 8998754443
|
|
| >PRK14262 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-36 Score=332.50 Aligned_cols=220 Identities=23% Similarity=0.307 Sum_probs=176.9
Q ss_pred eeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCc---eEEEEEEEcC
Q 000979 603 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG---YITGNITISG 679 (1202)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~---~~~G~i~~~g 679 (1202)
.++++|+++.|+ ++.+|+|+||++++||+++|+||||||||||+++|+|...+. +.+|+|.++|
T Consensus 3 ~l~~~~l~~~~~-------------~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g 69 (250)
T PRK14262 3 IIEIENFSAYYG-------------EKKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKG 69 (250)
T ss_pred eEEEEeeEEEeC-------------CceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECC
Confidence 378899998873 235899999999999999999999999999999999975421 2589999999
Q ss_pred ccCCc-----ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCC
Q 000979 680 YPKKQ-----ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVS 754 (1202)
Q Consensus 680 ~~~~~-----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~ 754 (1202)
.++.. ...++.++|++|++.+++ .|++||+.+...... ....+..++.++++++.+++.+..+... .....
T Consensus 70 ~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~ 145 (250)
T PRK14262 70 QDIYDPQLDVTEYRKKVGMVFQKPTPFP-MSIYDNVAFGPRIHG--VKSKHKLDRIVEESLKKAALWDEVKSEL-NKPGT 145 (250)
T ss_pred EEcccchhhHHHhhhhEEEEecCCccCc-ccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHHcCCCchhHHHH-hCChh
Confidence 87542 134567999999998887 899999988654321 1122233445778888888854211111 11245
Q ss_pred CCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCCE
Q 000979 755 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQ 834 (1202)
Q Consensus 755 ~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~ 834 (1202)
+||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++++ ++|+|++||+++ .+.+.+|++++|++ |+
T Consensus 146 ~LS~Gq~qr~~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tili~sH~~~-~~~~~~d~i~~l~~-G~ 222 (250)
T PRK14262 146 RLSGGQQQRLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELSE-NYTIVIVTHNIG-QAIRIADYIAFMYR-GE 222 (250)
T ss_pred hcCHHHHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHhc-CcEEEEEeCCHH-HHHHhCCEEEEEEC-CE
Confidence 7999999999999999999999999999999999999999999999864 789999999986 57889999999985 89
Q ss_pred EEEEcCCC
Q 000979 835 EIYVGPLG 842 (1202)
Q Consensus 835 ~~~~G~~~ 842 (1202)
++..|+++
T Consensus 223 i~~~g~~~ 230 (250)
T PRK14262 223 LIEYGPTR 230 (250)
T ss_pred EEEecCHH
Confidence 99999863
|
|
| >PRK14244 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-36 Score=331.83 Aligned_cols=219 Identities=18% Similarity=0.240 Sum_probs=175.4
Q ss_pred eEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCC--c-eEEEEEEEcCc
Q 000979 604 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG--G-YITGNITISGY 680 (1202)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~--~-~~~G~i~~~g~ 680 (1202)
-+++|+++.|+ ++.+|+|+||++++||+++|+||||||||||+++|+|...+ . +.+|+|.++|.
T Consensus 6 ~~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~ 72 (251)
T PRK14244 6 ASVKNLNLWYG-------------SKQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGI 72 (251)
T ss_pred EEeeeEEEEEC-------------CeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCE
Confidence 46788888773 24589999999999999999999999999999999997542 1 35899999998
Q ss_pred cCCc-----ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCC
Q 000979 681 PKKQ-----ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSG 755 (1202)
Q Consensus 681 ~~~~-----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~ 755 (1202)
++.. ...++.++|++|++.+++. |++||+.+....+.. ....+..++.++++++.+++.+........ .+..
T Consensus 73 ~i~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~~ni~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-~~~~ 149 (251)
T PRK14244 73 DVYSVDTNVVLLRAKVGMVFQKPNPFPK-SIYDNVAYGPKLHGL-AKNKKKLDEIVEKSLTSVGLWEELGDRLKD-SAFE 149 (251)
T ss_pred ehHhcccchHHHhhhEEEEecCcccccC-CHHHHHHHHHHhcCC-CCCHHHHHHHHHHHHHHcCCCchhhhHhhc-Chhh
Confidence 7532 1246679999999988875 999999886433211 112223345578889999986521111111 2357
Q ss_pred CCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCCEE
Q 000979 756 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQE 835 (1202)
Q Consensus 756 LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~ 835 (1202)
||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++. +|+|||++||+++ ++.+.+|++++|++ |++
T Consensus 150 LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~-~~~tiiiisH~~~-~~~~~~d~i~~l~~-G~i 226 (251)
T PRK14244 150 LSGGQQQRLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQELK-KNFTIIVVTHSMK-QAKKVSDRVAFFQS-GRI 226 (251)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCHH-HHHhhcCEEEEEEC-CEE
Confidence 99999999999999999999999999999999999999999999985 4899999999986 57788999999985 899
Q ss_pred EEEcCC
Q 000979 836 IYVGPL 841 (1202)
Q Consensus 836 ~~~G~~ 841 (1202)
+..|++
T Consensus 227 ~~~~~~ 232 (251)
T PRK14244 227 VEYNTT 232 (251)
T ss_pred EEeCCH
Confidence 999885
|
|
| >COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-37 Score=380.60 Aligned_cols=216 Identities=28% Similarity=0.428 Sum_probs=179.7
Q ss_pred CCceeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcC
Q 000979 600 EPHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISG 679 (1202)
Q Consensus 600 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g 679 (1202)
....++|+||+|.|+. ++++|+|+||+++|||.+||+||||||||||+++|.|..+ +.+|+|.+||
T Consensus 325 ~~~~I~f~~vsf~y~~------------~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~--~~~G~I~idg 390 (567)
T COG1132 325 TIGSIEFENVSFSYPG------------KKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYD--PTSGEILIDG 390 (567)
T ss_pred CCCeEEEEEEEEEcCC------------CCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCC--CCCCeEEECC
Confidence 3456999999999962 3568999999999999999999999999999999999876 4589999999
Q ss_pred ccCCc---ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHH-----HHHHHHHcCCCccccccccCC
Q 000979 680 YPKKQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMF-----IDEVMELVELNPLRQSLVGLP 751 (1202)
Q Consensus 680 ~~~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~-----~~~~l~~l~l~~~~~~~~~~~ 751 (1202)
.+++. ..+|+.++||+|++.+|. .||+||+.++. ++.++++..+. +++.++. +.+..|+.+|..
T Consensus 391 ~dI~~i~~~~lr~~I~~V~Qd~~LF~-~TI~~NI~~g~-----~~at~eei~~a~k~a~~~d~I~~--lp~g~dt~vge~ 462 (567)
T COG1132 391 IDIRDISLDSLRKRIGIVSQDPLLFS-GTIRENIALGR-----PDATDEEIEEALKLANAHEFIAN--LPDGYDTIVGER 462 (567)
T ss_pred EehhhcCHHHHHHhccEEcccceeec-ccHHHHHhcCC-----CCCCHHHHHHHHHHhChHHHHHh--CcccccceecCC
Confidence 88754 567889999999999998 89999999863 22333332221 2222332 344678999855
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEec
Q 000979 752 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKR 831 (1202)
Q Consensus 752 ~~~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~ 831 (1202)
| ..||||||||++|||||++||+||+||||||+||+.++..+++.++++. +++|+|+++|+++ ....+|+|++|++
T Consensus 463 G-~~LSgGQrQrlaiARall~~~~ILILDEaTSalD~~tE~~I~~~l~~l~-~~rT~iiIaHRls--ti~~aD~IiVl~~ 538 (567)
T COG1132 463 G-VNLSGGQRQRLAIARALLRNPPILILDEATSALDTETEALIQDALKKLL-KGRTTLIIAHRLS--TIKNADRIIVLDN 538 (567)
T ss_pred C-ccCCHHHHHHHHHHHHHhcCCCEEEEeccccccCHHhHHHHHHHHHHHh-cCCEEEEEeccHh--HHHhCCEEEEEEC
Confidence 4 4699999999999999999999999999999999999999999999876 6789999999986 3455999999985
Q ss_pred CCEEEEEcCCC
Q 000979 832 GGQEIYVGPLG 842 (1202)
Q Consensus 832 gG~~~~~G~~~ 842 (1202)
|+++..|+.+
T Consensus 539 -G~i~e~G~h~ 548 (567)
T COG1132 539 -GRIVERGTHE 548 (567)
T ss_pred -CEEEEecCHH
Confidence 8999999974
|
|
| >PRK14253 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-36 Score=331.17 Aligned_cols=219 Identities=22% Similarity=0.250 Sum_probs=175.9
Q ss_pred eeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCc---eEEEEEEEcC
Q 000979 603 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG---YITGNITISG 679 (1202)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~---~~~G~i~~~g 679 (1202)
.++++|+++.|+ ++.+|+|+||++++||+++|+||||||||||+++|+|..++. +.+|+|.++|
T Consensus 3 ~l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g 69 (249)
T PRK14253 3 KFNIENLDLFYG-------------ENQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDG 69 (249)
T ss_pred eEEEeccEEEEC-------------CeeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECC
Confidence 477899998874 245899999999999999999999999999999999976532 3579999999
Q ss_pred ccCCc----ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCC
Q 000979 680 YPKKQ----ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSG 755 (1202)
Q Consensus 680 ~~~~~----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~ 755 (1202)
.++.. ...++.++|++|++.+++ .||.||+.+...... ....+..++++++.++.+++.+....... ....+
T Consensus 70 ~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~ 145 (249)
T PRK14253 70 EDIYGNIDVADLRIKVGMVFQKPNPFP-MSIYENVAYGLRAQG--IKDKKVLDEVVERSLRGAALWDEVKDRLK-SHAFG 145 (249)
T ss_pred EEcccccchHHHHhheeEEecCCCcCc-ccHHHHHHhHHHhcC--CCchHHHHHHHHHHHHHcCCchhhhHHhh-cCccc
Confidence 87531 234567999999998887 899999987643221 11122334556778888887532111111 12357
Q ss_pred CCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCCEE
Q 000979 756 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQE 835 (1202)
Q Consensus 756 LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~ 835 (1202)
||||||||++|||||+.+|+||+|||||+|||+.++..+.+.|+++++ ++|||++||++. ++.+.+|++++|++ |++
T Consensus 146 LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~~-~~~~~~d~i~~l~~-G~i 222 (249)
T PRK14253 146 LSGGQQQRLCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEELKK-NYTIVIVTHSMQ-QARRISDRTAFFLM-GEL 222 (249)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEecCHH-HHHHhCCEEEEEEC-CEE
Confidence 999999999999999999999999999999999999999999999865 689999999986 57888999999985 899
Q ss_pred EEEcCC
Q 000979 836 IYVGPL 841 (1202)
Q Consensus 836 ~~~G~~ 841 (1202)
+..|++
T Consensus 223 ~~~g~~ 228 (249)
T PRK14253 223 VEHDDT 228 (249)
T ss_pred EEeCCH
Confidence 999985
|
|
| >PRK14236 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-36 Score=334.11 Aligned_cols=217 Identities=22% Similarity=0.253 Sum_probs=177.9
Q ss_pred ceeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCC---ceEEEEEEEc
Q 000979 602 HSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG---GYITGNITIS 678 (1202)
Q Consensus 602 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~---~~~~G~i~~~ 678 (1202)
..++++|+++.|. ++.+|+|+||++++||+++|+||||||||||+++|+|...+ .+.+|+|.++
T Consensus 24 ~~l~~~nl~~~~~-------------~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~ 90 (272)
T PRK14236 24 TALEVRNLNLFYG-------------DKQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLD 90 (272)
T ss_pred cEEEEEEEEEEEC-------------CeeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEEC
Confidence 3589999999873 23589999999999999999999999999999999998542 1358999999
Q ss_pred CccCCc-----ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCc----ccccccc
Q 000979 679 GYPKKQ-----ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP----LRQSLVG 749 (1202)
Q Consensus 679 g~~~~~-----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~----~~~~~~~ 749 (1202)
|.++.. ...++.++|++|++.+++. |++||+.+...... ....+..++.++++++.+++.+ ..+..
T Consensus 91 g~~i~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~-- 165 (272)
T PRK14236 91 GQNIYDKKVDVAELRRRVGMVFQRPNPFPK-SIYENVVYGLRLQG--INNRRVLDEAVERSLRGAALWDEVKDRLHEN-- 165 (272)
T ss_pred CEECcccccCHHHHhccEEEEecCCccCcc-cHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHHcCCChhHHHHhhCC--
Confidence 987642 1346789999999988885 99999988654321 1122223355788888888853 22222
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEE
Q 000979 750 LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLM 829 (1202)
Q Consensus 750 ~~~~~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l 829 (1202)
...||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++++ +.|+|++||+++ ++.+.+|++++|
T Consensus 166 ---~~~LS~Gq~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~-~~tiiivtH~~~-~~~~~~d~i~~l 240 (272)
T PRK14236 166 ---AFGLSGGQQQRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKS-KYTIVIVTHNMQ-QAARVSDYTAFM 240 (272)
T ss_pred ---cccCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCeEEEEeCCHH-HHHhhCCEEEEE
Confidence 357999999999999999999999999999999999999999999999975 789999999986 577899999999
Q ss_pred ecCCEEEEEcCCC
Q 000979 830 KRGGQEIYVGPLG 842 (1202)
Q Consensus 830 ~~gG~~~~~G~~~ 842 (1202)
++ |+++..|+++
T Consensus 241 ~~-G~i~~~g~~~ 252 (272)
T PRK14236 241 YM-GKLVEYGDTD 252 (272)
T ss_pred EC-CEEEecCCHH
Confidence 85 8999999863
|
|
| >PRK14272 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-36 Score=331.74 Aligned_cols=217 Identities=23% Similarity=0.276 Sum_probs=176.2
Q ss_pred eeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCce---EEEEEEEcC
Q 000979 603 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGY---ITGNITISG 679 (1202)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~---~~G~i~~~g 679 (1202)
.++++|+++.|+ ++.+|+|+||++++||+++|+||||||||||+|+|+|..++.+ .+|+|.++|
T Consensus 4 ~l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g 70 (252)
T PRK14272 4 LLSAQDVNIYYG-------------DKQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDG 70 (252)
T ss_pred EEEEeeeEEEEC-------------CEEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECC
Confidence 477899998873 2458999999999999999999999999999999999865322 379999999
Q ss_pred ccCCc-----ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCC----ccccccccC
Q 000979 680 YPKKQ-----ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELN----PLRQSLVGL 750 (1202)
Q Consensus 680 ~~~~~-----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~----~~~~~~~~~ 750 (1202)
.++.. ..+++.++|++|++.+++.+|+.||+.+...... ....++..+.+++.++.+++. +..++.
T Consensus 71 ~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~--- 145 (252)
T PRK14272 71 QDIYGPRVDPVAMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAG--IRDRDHLMEVAERSLRGAALWDEVKDRLKTP--- 145 (252)
T ss_pred EEcccCccCHHHhhceeEEEeccCccCcCCCHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHcCcchhhhhhhcCC---
Confidence 87642 1345679999999999999999999987653221 112223344566677777653 223332
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEe
Q 000979 751 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 830 (1202)
Q Consensus 751 ~~~~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~ 830 (1202)
++.||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|+|++||+++ .+.+.|||+++|+
T Consensus 146 --~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~-~~~~~~d~i~~l~ 221 (252)
T PRK14272 146 --ATGLSGGQQQRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLKK-VTTIIIVTHNMH-QAARVSDTTSFFL 221 (252)
T ss_pred --cccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCHH-HHHHhCCEEEEEE
Confidence 457999999999999999999999999999999999999999999999864 799999999986 5778899999998
Q ss_pred cCCEEEEEcCCC
Q 000979 831 RGGQEIYVGPLG 842 (1202)
Q Consensus 831 ~gG~~~~~G~~~ 842 (1202)
+ |++++.|+++
T Consensus 222 ~-G~i~~~~~~~ 232 (252)
T PRK14272 222 V-GDLVEHGPTD 232 (252)
T ss_pred C-CEEEEeCCHH
Confidence 5 8999999863
|
|
| >PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-36 Score=333.31 Aligned_cols=216 Identities=24% Similarity=0.256 Sum_probs=176.3
Q ss_pred eeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCcc-
Q 000979 603 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP- 681 (1202)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~- 681 (1202)
.++++|+++.|+ ++.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+
T Consensus 6 ~l~~~~l~~~~~-------------~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~ 70 (258)
T PRK11701 6 LLSVRGLTKLYG-------------PRKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLA--PDAGEVHYRMRDG 70 (258)
T ss_pred eEEEeeeEEEcC-------------CceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCCEEEECCccc
Confidence 478999999874 1358999999999999999999999999999999999876 458999999986
Q ss_pred ----CCcc---c----ccceEEEeecCCC--CCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCc-ccccc
Q 000979 682 ----KKQE---T----FARISGYCEQNDI--HSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP-LRQSL 747 (1202)
Q Consensus 682 ----~~~~---~----~~~~~~~v~q~~~--~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~-~~~~~ 747 (1202)
+... . .++.++|++|++. +.+.+|+.||+.+...... .....+.+..++++++.+++.+ ..++.
T Consensus 71 ~~~~i~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 148 (258)
T PRK11701 71 QLRDLYALSEAERRRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVG--ARHYGDIRATAGDWLERVEIDAARIDDL 148 (258)
T ss_pred cccccccCCHHHHHHHhhcceEEEeeCcccccCccccHHHHHHHHHHHhc--cCcHHHHHHHHHHHHHHcCCChhHHhCC
Confidence 4321 1 2446899999973 5677899999976432111 1112233456788999999963 44443
Q ss_pred ccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhcceE
Q 000979 748 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDEL 826 (1202)
Q Consensus 748 ~~~~~~~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v 826 (1202)
+..||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++ |.|||++||+++ .+.+.+|++
T Consensus 149 -----~~~LS~Gq~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~~-~~~~~~d~i 222 (258)
T PRK11701 149 -----PTTFSGGMQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLA-VARLLAHRL 222 (258)
T ss_pred -----CccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHH-HHHHhcCEE
Confidence 3579999999999999999999999999999999999999999999998765 899999999986 466789999
Q ss_pred EEEecCCEEEEEcCCC
Q 000979 827 FLMKRGGQEIYVGPLG 842 (1202)
Q Consensus 827 ~~l~~gG~~~~~G~~~ 842 (1202)
++|++ |++++.|+++
T Consensus 223 ~~l~~-g~i~~~~~~~ 237 (258)
T PRK11701 223 LVMKQ-GRVVESGLTD 237 (258)
T ss_pred EEEEC-CEEEEeCCHH
Confidence 99985 8999999863
|
|
| >PRK14258 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-36 Score=332.38 Aligned_cols=222 Identities=20% Similarity=0.258 Sum_probs=178.6
Q ss_pred eeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCc---eEEEEEEEcC
Q 000979 603 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG---YITGNITISG 679 (1202)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~---~~~G~i~~~g 679 (1202)
.++++|+++.|. +..+|+|+||++++||+++|+||||||||||+++|+|..++. +..|+|.++|
T Consensus 7 ~l~~~nl~~~~~-------------~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g 73 (261)
T PRK14258 7 AIKVNNLSFYYD-------------TQKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFN 73 (261)
T ss_pred eEEEeeEEEEeC-------------CeeEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECC
Confidence 488999999884 135899999999999999999999999999999999976532 2469999999
Q ss_pred ccCCc-----ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCC
Q 000979 680 YPKKQ-----ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVS 754 (1202)
Q Consensus 680 ~~~~~-----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~ 754 (1202)
.++.. ...++.++|++|++.+++ .|++||+.+...... .....+.++.+.++++.+++.+..+.... ..+.
T Consensus 74 ~~i~~~~~~~~~~~~~i~~~~q~~~l~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-~~~~ 149 (261)
T PRK14258 74 QNIYERRVNLNRLRRQVSMVHPKPNLFP-MSVYDNVAYGVKIVG--WRPKLEIDDIVESALKDADLWDEIKHKIH-KSAL 149 (261)
T ss_pred EEhhccccchHHhhccEEEEecCCccCc-ccHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHHcCCcchhhhHhc-CCcc
Confidence 87531 234567999999988888 899999987653221 11222334567888999987542111111 1245
Q ss_pred CCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCCHHHHHhcceEEEEecC-
Q 000979 755 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKRG- 832 (1202)
Q Consensus 755 ~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~v~~l~~g- 832 (1202)
.||||||||++|||+|+++|++|+|||||+|||+.++..+.+.|+++++ +|+|||++||+++ ++.+.||++++|+++
T Consensus 150 ~LSgGq~qrv~laral~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiiivsH~~~-~i~~~~d~i~~l~~~~ 228 (261)
T PRK14258 150 DLSGGQQQRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLH-QVSRLSDFTAFFKGNE 228 (261)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHH-HHHHhcCEEEEEccCC
Confidence 7999999999999999999999999999999999999999999999865 4899999999986 688899999999852
Q ss_pred ---CEEEEEcCCC
Q 000979 833 ---GQEIYVGPLG 842 (1202)
Q Consensus 833 ---G~~~~~G~~~ 842 (1202)
|++++.|+++
T Consensus 229 ~~~G~i~~~~~~~ 241 (261)
T PRK14258 229 NRIGQLVEFGLTK 241 (261)
T ss_pred CcCceEEEeCCHH
Confidence 8999999873
|
|
| >TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-36 Score=324.66 Aligned_cols=211 Identities=23% Similarity=0.339 Sum_probs=176.5
Q ss_pred eEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCC
Q 000979 604 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 683 (1202)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 683 (1202)
++++|+++.++.. .+.+.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.
T Consensus 2 l~~~~l~~~~~~~---------~~~~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~--~~~G~i~~~g~~~~ 70 (220)
T TIGR02982 2 ISIRNLNHYYGHG---------SLRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRS--VQEGSLKVLGQELY 70 (220)
T ss_pred EEEEEEEEEccCC---------CcceeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEECCEEhH
Confidence 6788999887410 123579999999999999999999999999999999999876 45899999998764
Q ss_pred cc------cccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCC
Q 000979 684 QE------TFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLS 757 (1202)
Q Consensus 684 ~~------~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LS 757 (1202)
.. ..++.++|++|++.+++.+|+.||+.+...... ....++.+++++++++.+++.+..++. ++.||
T Consensus 71 ~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~n~~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~lS 143 (220)
T TIGR02982 71 GASEKELVQLRRNIGYIFQAHNLLGFLTARQNVQMALELQP--NLSYQEARERARAMLEAVGLGDHLDYY-----PHNLS 143 (220)
T ss_pred hcCHhHHHHHHhheEEEcCChhhcCCCCHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHHcCChhhhhcC-----hhhCC
Confidence 21 245789999999999999999999998654321 123344456688999999998766665 35799
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCCHHHHHhcceEEEEecCCEE
Q 000979 758 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKRGGQE 835 (1202)
Q Consensus 758 gGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~ 835 (1202)
||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ .|+|+|+++|+++ +.+.+|++++|.+ |++
T Consensus 144 ~G~~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~~~--~~~~~d~v~~l~~-g~~ 219 (220)
T TIGR02982 144 GGQKQRVAIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTHDNR--ILDVADRIVHMED-GKL 219 (220)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH--HHhhCCEEEEEEC-CEE
Confidence 9999999999999999999999999999999999999999999876 4899999999985 5689999999985 664
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. |
| >PRK09700 D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-36 Score=367.20 Aligned_cols=219 Identities=25% Similarity=0.300 Sum_probs=183.8
Q ss_pred eeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccC
Q 000979 603 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 682 (1202)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 682 (1202)
.++++|++++|. ++.+|+|+||++++||+++|+||||||||||+|+|+|... +.+|+|.++|.++
T Consensus 5 ~l~~~~l~~~~~-------------~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~--p~~G~i~~~g~~i 69 (510)
T PRK09700 5 YISMAGIGKSFG-------------PVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHE--PTKGTITINNINY 69 (510)
T ss_pred eEEEeeeEEEcC-------------CeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcC--CCccEEEECCEEC
Confidence 378899998873 2458999999999999999999999999999999999876 4589999999876
Q ss_pred Ccc----cccceEEEeecCCCCCCCCCHHHHHHHHHHcc----CCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCC
Q 000979 683 KQE----TFARISGYCEQNDIHSPFVTIYESLLFSAWLR----LSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVS 754 (1202)
Q Consensus 683 ~~~----~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~----~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~ 754 (1202)
... ..++.++||+|++.+++.+||+||+.++.... .....+.++.+++++++++.+|+.+..++.+ +
T Consensus 70 ~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~ 144 (510)
T PRK09700 70 NKLDHKLAAQLGIGIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDLDEKV-----A 144 (510)
T ss_pred CCCCHHHHHHCCeEEEeecccccCCCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCCCcccch-----h
Confidence 431 12356999999999999999999998753211 0000122334456889999999987777664 5
Q ss_pred CCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCCE
Q 000979 755 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQ 834 (1202)
Q Consensus 755 ~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~ 834 (1202)
+|||||||||+|||||+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||+++ .+.+.||++++|++ |+
T Consensus 145 ~LSgG~~qrv~ia~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsHd~~-~~~~~~d~v~~l~~-G~ 222 (510)
T PRK09700 145 NLSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKLA-EIRRICDRYTVMKD-GS 222 (510)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CE
Confidence 79999999999999999999999999999999999999999999999878999999999986 57789999999984 89
Q ss_pred EEEEcCCCc
Q 000979 835 EIYVGPLGR 843 (1202)
Q Consensus 835 ~~~~G~~~~ 843 (1202)
+++.|++++
T Consensus 223 i~~~g~~~~ 231 (510)
T PRK09700 223 SVCSGMVSD 231 (510)
T ss_pred Eeeecchhh
Confidence 999999865
|
|
| >TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-36 Score=378.38 Aligned_cols=212 Identities=26% Similarity=0.399 Sum_probs=177.0
Q ss_pred CceeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCc
Q 000979 601 PHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGY 680 (1202)
Q Consensus 601 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~ 680 (1202)
...++++||+|+|+. .++.+|+|+|++|++||.+||+||||||||||+|+|+|..+ +.+|+|.+||.
T Consensus 475 ~~~I~~~~vsf~y~~-----------~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~--p~~G~I~idg~ 541 (710)
T TIGR03796 475 SGYVELRNITFGYSP-----------LEPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQ--PWSGEILFDGI 541 (710)
T ss_pred CCeEEEEEEEEecCC-----------CCCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCE
Confidence 357999999999962 22458999999999999999999999999999999999877 45899999999
Q ss_pred cCCc---ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCc-------cccccccC
Q 000979 681 PKKQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP-------LRQSLVGL 750 (1202)
Q Consensus 681 ~~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~-------~~~~~~~~ 750 (1202)
++++ ..+|+.++||+|++.+++ .|++||+.++. ++.++++ +.++++..++.+ -.|+.+|.
T Consensus 542 ~i~~~~~~~lr~~i~~v~Q~~~lf~-gTi~eNi~l~~-----~~~~~~~----i~~al~~~~l~~~i~~lp~gl~t~i~e 611 (710)
T TIGR03796 542 PREEIPREVLANSVAMVDQDIFLFE-GTVRDNLTLWD-----PTIPDAD----LVRACKDAAIHDVITSRPGGYDAELAE 611 (710)
T ss_pred eHHHCCHHHHHhheeEEecCChhhh-ccHHHHhhCCC-----CCCCHHH----HHHHHHHhCCHHHHHhCcCcccceecc
Confidence 8653 457889999999999885 69999998641 1233332 455566555543 45677776
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEe
Q 000979 751 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 830 (1202)
Q Consensus 751 ~~~~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~ 830 (1202)
.| ..||||||||++|||||+++|+||+||||||+||+.+++.+.+.|++ .++|+|++||+++ ....+||+++|+
T Consensus 612 ~G-~~LSGGQrQRiaLARall~~p~iliLDEptS~LD~~te~~i~~~l~~---~~~T~IiitHrl~--~i~~~D~Iivl~ 685 (710)
T TIGR03796 612 GG-ANLSGGQRQRLEIARALVRNPSILILDEATSALDPETEKIIDDNLRR---RGCTCIIVAHRLS--TIRDCDEIIVLE 685 (710)
T ss_pred CC-CCCCHHHHHHHHHHHHHhhCCCEEEEECccccCCHHHHHHHHHHHHh---cCCEEEEEecCHH--HHHhCCEEEEEe
Confidence 54 56999999999999999999999999999999999999999999975 4899999999985 567799999998
Q ss_pred cCCEEEEEcCCC
Q 000979 831 RGGQEIYVGPLG 842 (1202)
Q Consensus 831 ~gG~~~~~G~~~ 842 (1202)
+ |+++..|+.+
T Consensus 686 ~-G~i~~~G~~~ 696 (710)
T TIGR03796 686 R-GKVVQRGTHE 696 (710)
T ss_pred C-CEEEEecCHH
Confidence 5 8999999863
|
This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin. |
| >PRK14271 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-36 Score=333.52 Aligned_cols=220 Identities=23% Similarity=0.284 Sum_probs=178.9
Q ss_pred eeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCc---eEEEEEEEcC
Q 000979 603 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG---YITGNITISG 679 (1202)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~---~~~G~i~~~g 679 (1202)
.+.++|++++|+ ++.+|+|+||++++||+++|+||||||||||+++|+|..++. +.+|+|.++|
T Consensus 21 ~l~i~nl~~~~~-------------~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g 87 (276)
T PRK14271 21 AMAAVNLTLGFA-------------GKTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGG 87 (276)
T ss_pred EEEEeeEEEEEC-------------CEEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECC
Confidence 578999999884 246899999999999999999999999999999999976531 3589999999
Q ss_pred ccCCc----ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCC
Q 000979 680 YPKKQ----ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSG 755 (1202)
Q Consensus 680 ~~~~~----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~ 755 (1202)
.++.. ...++.++|++|++.+++ .|++||+.+...... ..+.++.+..+.++++.+++.+..+.... ..+..
T Consensus 88 ~~i~~~~~~~~~~~~i~~v~q~~~l~~-~tv~eni~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~l~-~~~~~ 163 (276)
T PRK14271 88 RSIFNYRDVLEFRRRVGMLFQRPNPFP-MSIMDNVLAGVRAHK--LVPRKEFRGVAQARLTEVGLWDAVKDRLS-DSPFR 163 (276)
T ss_pred EEccccchhHHHhhheEEeccCCccCC-ccHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHHcCCCchhhhHhh-CCccc
Confidence 87542 234667999999998888 899999987643221 12333334456788899998643221111 12457
Q ss_pred CCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCCEE
Q 000979 756 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQE 835 (1202)
Q Consensus 756 LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~ 835 (1202)
||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||+++|+++ ++.+.+||+++|.+ |++
T Consensus 164 LSgGq~qrl~LAral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tiiivsH~~~-~~~~~~dri~~l~~-G~i 240 (276)
T PRK14271 164 LSGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLAD-RLTVIIVTHNLA-QAARISDRAALFFD-GRL 240 (276)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhCCEEEEEEC-CEE
Confidence 999999999999999999999999999999999999999999999875 589999999986 57889999999985 899
Q ss_pred EEEcCCC
Q 000979 836 IYVGPLG 842 (1202)
Q Consensus 836 ~~~G~~~ 842 (1202)
+..|+++
T Consensus 241 ~~~g~~~ 247 (276)
T PRK14271 241 VEEGPTE 247 (276)
T ss_pred EEeCCHH
Confidence 9999864
|
|
| >PRK13543 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-36 Score=322.00 Aligned_cols=201 Identities=23% Similarity=0.294 Sum_probs=172.2
Q ss_pred eeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccC
Q 000979 603 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 682 (1202)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 682 (1202)
.++++|++++++ ++.+++++||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++
T Consensus 11 ~l~~~~l~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~i 75 (214)
T PRK13543 11 LLAAHALAFSRN-------------EEPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLH--VESGQIQIDGKTA 75 (214)
T ss_pred eEEEeeEEEecC-------------CceeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCC--CCCeeEEECCEEc
Confidence 488999998763 2358999999999999999999999999999999999876 4589999999876
Q ss_pred CcccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHH
Q 000979 683 KQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRK 762 (1202)
Q Consensus 683 ~~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrq 762 (1202)
.....++.++|++|++.+++.+|++||+.+....+. .. .++.++++++.+++.+..++.+ ..|||||||
T Consensus 76 ~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~---~~---~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~q 144 (214)
T PRK13543 76 TRGDRSRFMAYLGHLPGLKADLSTLENLHFLCGLHG---RR---AKQMPGSALAIVGLAGYEDTLV-----RQLSAGQKK 144 (214)
T ss_pred cchhhhhceEEeecCcccccCCcHHHHHHHHHHhcC---Cc---HHHHHHHHHHHcCChhhccCCh-----hhCCHHHHH
Confidence 543345578999999989988999999988654321 11 1234678899999987766653 579999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEe
Q 000979 763 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 830 (1202)
Q Consensus 763 Rv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~ 830 (1202)
|++|||+++.+|++|+|||||+|||+.+++.+.+.|++++++|+|+|++||+++ ++.+.+|++++++
T Consensus 145 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~~~i~~l~ 211 (214)
T PRK13543 145 RLALARLWLSPAPLWLLDEPYANLDLEGITLVNRMISAHLRGGGAALVTTHGAY-AAPPVRTRMLTLE 211 (214)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecChh-hhhhhcceEEEEe
Confidence 999999999999999999999999999999999999998888999999999987 6889999999986
|
|
| >PRK14249 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-35 Score=329.91 Aligned_cols=220 Identities=20% Similarity=0.250 Sum_probs=175.7
Q ss_pred eeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCc---eEEEEEEEcC
Q 000979 603 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG---YITGNITISG 679 (1202)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~---~~~G~i~~~g 679 (1202)
.++++|+++.|. ++.+|+|+||++++||+++|+||||||||||+++|+|..++. +..|+|.++|
T Consensus 4 ~l~~~~l~~~~~-------------~~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g 70 (251)
T PRK14249 4 KIKIRGVNFFYH-------------KHQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDN 70 (251)
T ss_pred eEEEEEEEEEEC-------------CeeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECC
Confidence 478899999874 235899999999999999999999999999999999976532 2369999999
Q ss_pred ccCCc-----ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCC
Q 000979 680 YPKKQ-----ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVS 754 (1202)
Q Consensus 680 ~~~~~-----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~ 754 (1202)
.++.. ...++.++|++|++.+++. |++||+.+....+.. ...+..++.++++++.+++.+....... ....
T Consensus 71 ~~~~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~l~~~~~-~~~~ 146 (251)
T PRK14249 71 ENIYSPNLDVVNLRKRVGMVFQQPNPFPK-SIFDNVAFGPRMLGT--TAQSRLDEVVEKSLRQAALWDEVKDNLH-KSGL 146 (251)
T ss_pred EEccccccChHHhhceEEEEecCCccCcC-cHHHHHhhHHHhcCC--ChhhHHHHHHHHHHHHhCCchhhhhHhh-CCcc
Confidence 87532 1346789999999988875 999999987543211 1122233456777888887532111111 1245
Q ss_pred CCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCCE
Q 000979 755 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQ 834 (1202)
Q Consensus 755 ~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~ 834 (1202)
.||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++. +++|||++||+++ ++.+.+|++++|++ |+
T Consensus 147 ~LS~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tilivsh~~~-~~~~~~d~i~~l~~-G~ 223 (251)
T PRK14249 147 ALSGGQQQRLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQELK-QNYTIAIVTHNMQ-QAARASDWTGFLLT-GD 223 (251)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCEEEEEeCCHH-HHHhhCCEEEEEeC-Ce
Confidence 799999999999999999999999999999999999999999999984 5899999999986 57788999999984 89
Q ss_pred EEEEcCCC
Q 000979 835 EIYVGPLG 842 (1202)
Q Consensus 835 ~~~~G~~~ 842 (1202)
+++.|+++
T Consensus 224 i~~~~~~~ 231 (251)
T PRK14249 224 LVEYGRTG 231 (251)
T ss_pred EEEeCCHH
Confidence 99999863
|
|
| >PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-36 Score=330.36 Aligned_cols=214 Identities=21% Similarity=0.275 Sum_probs=175.2
Q ss_pred eeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCc--eEEEEEEEcCc
Q 000979 603 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG--YITGNITISGY 680 (1202)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~--~~~G~i~~~g~ 680 (1202)
.++++|++++|. +.+|+|+|+++++||+++|+||||||||||+++|+|..++. +.+|+|.++|.
T Consensus 4 ~l~~~~l~~~~~--------------~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~ 69 (254)
T PRK10418 4 QIELRNIALQAA--------------QPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGK 69 (254)
T ss_pred EEEEeCeEEEec--------------cceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCe
Confidence 588999998872 24799999999999999999999999999999999986531 16899999998
Q ss_pred cCCcccc-cceEEEeecCCC--CCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCcc---ccccccCCCCC
Q 000979 681 PKKQETF-ARISGYCEQNDI--HSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPL---RQSLVGLPGVS 754 (1202)
Q Consensus 681 ~~~~~~~-~~~~~~v~q~~~--~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~---~~~~~~~~~~~ 754 (1202)
++..... ++.++||+|++. +.+..|+.+++.+.+.... ... .++.++++++.+++.+. .++. ..
T Consensus 70 ~i~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~---~~~--~~~~~~~~l~~~~l~~~~~~~~~~-----~~ 139 (254)
T PRK10418 70 PVAPCALRGRKIATIMQNPRSAFNPLHTMHTHARETCLALG---KPA--DDATLTAALEAVGLENAARVLKLY-----PF 139 (254)
T ss_pred eccccccccceEEEEecCCccccCccccHHHHHHHHHHHcC---CCh--HHHHHHHHHHHcCCCChhhhhhcC-----Cc
Confidence 7653222 357999999974 4466899999876543221 111 12457889999999762 3433 35
Q ss_pred CCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhcceEEEEecCC
Q 000979 755 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGG 833 (1202)
Q Consensus 755 ~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gG 833 (1202)
.||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||+++ ++.+.+|++++|++ |
T Consensus 140 ~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~~~-~~~~~~d~v~~l~~-G 217 (254)
T PRK10418 140 EMSGGMLQRMMIALALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDMG-VVARLADDVAVMSH-G 217 (254)
T ss_pred ccCHHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEecCHH-HHHHhCCEEEEEEC-C
Confidence 79999999999999999999999999999999999999999999998764 899999999986 57788999999985 8
Q ss_pred EEEEEcCCC
Q 000979 834 QEIYVGPLG 842 (1202)
Q Consensus 834 ~~~~~G~~~ 842 (1202)
+++..|+++
T Consensus 218 ~i~~~~~~~ 226 (254)
T PRK10418 218 RIVEQGDVE 226 (254)
T ss_pred EEEEecCHH
Confidence 999999863
|
|
| >TIGR02770 nickel_nikD nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-36 Score=328.19 Aligned_cols=202 Identities=24% Similarity=0.309 Sum_probs=167.0
Q ss_pred EeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCc--eEEEEEEEcCccCCcccc-cceEEEeecCCC--CCCCCC
Q 000979 631 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG--YITGNITISGYPKKQETF-ARISGYCEQNDI--HSPFVT 705 (1202)
Q Consensus 631 iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~--~~~G~i~~~g~~~~~~~~-~~~~~~v~q~~~--~~~~lT 705 (1202)
+|+|+|+++++||+++|+||||||||||+++|+|..++. +.+|+|.++|.++..... ++.++|++|++. +.+.+|
T Consensus 1 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~~~t 80 (230)
T TIGR02770 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIRGRHIATIMQNPRTAFNPLFT 80 (230)
T ss_pred CccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhhhhhhheeEEEecCchhhcCcccC
Confidence 478999999999999999999999999999999987631 158999999987654322 357899999984 556789
Q ss_pred HHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCc---cccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCC
Q 000979 706 IYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP---LRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEP 782 (1202)
Q Consensus 706 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~---~~~~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~illlDEP 782 (1202)
+.||+.+...... ...+..+++++++++.+++.+ ..+.. ++.|||||||||+|||||+.+|+||+||||
T Consensus 81 ~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----~~~LS~G~~qrv~laral~~~p~vllLDEP 152 (230)
T TIGR02770 81 MGNHAIETLRSLG---KLSKQARALILEALEAVGLPDPEEVLKKY-----PFQLSGGMLQRVMIALALLLEPPFLIADEP 152 (230)
T ss_pred HHHHHHHHHHHcC---ccHHHHHHHHHHHHHHcCCCchHHHHhCC-----hhhcCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 9999977643221 112233456889999999973 34443 357999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhcceEEEEecCCEEEEEcCCC
Q 000979 783 TSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLG 842 (1202)
Q Consensus 783 tsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G~~~ 842 (1202)
|+|||+.++..+.+.|++++++ |+|||+++|+++ ++...+|++++|++ |+++..|+++
T Consensus 153 t~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-G~i~~~~~~~ 211 (230)
T TIGR02770 153 TTDLDVVNQARVLKLLRELRQLFGTGILLITHDLG-VVARIADEVAVMDD-GRIVERGTVK 211 (230)
T ss_pred ccccCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEeCCHH
Confidence 9999999999999999998764 899999999986 57789999999985 8999999863
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous. |
| >COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-36 Score=287.05 Aligned_cols=216 Identities=23% Similarity=0.320 Sum_probs=181.6
Q ss_pred eeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccC
Q 000979 603 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 682 (1202)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 682 (1202)
.+..+++++.|. ..++|.||+++.+.||.+.++||||||||||++.|.=... +.+|+..+.|...
T Consensus 2 sirv~~in~~yg-------------~~q~lfdi~l~~~~getlvllgpsgagkssllr~lnlle~--p~sg~l~ia~~~f 66 (242)
T COG4161 2 SIQLNGINCFYG-------------AHQALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEM--PRSGTLNIAGNHF 66 (242)
T ss_pred ceEEcccccccc-------------cchheeeeeecCCCCCEEEEECCCCCchHHHHHHHHHHhC--CCCCeEEeccccc
Confidence 366778887763 3568999999999999999999999999999999975443 4478887776532
Q ss_pred C------c---ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCC
Q 000979 683 K------Q---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGV 753 (1202)
Q Consensus 683 ~------~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~ 753 (1202)
+ . ...|+.+|+|+|...++|.+||.|||.-+. ++. .+.++++.+.+..++++.+.|.+.+|+..
T Consensus 67 d~s~~~~~k~i~~lr~~vgmvfqqy~lwphltv~enlieap-~kv-~gl~~~qa~~~a~ellkrlrl~~~adr~p----- 139 (242)
T COG4161 67 DFSKTPSDKAIRDLRRNVGMVFQQYNLWPHLTVQENLIEAP-CRV-LGLSKDQALARAEKLLKRLRLKPYADRYP----- 139 (242)
T ss_pred ccccCccHHHHHHHHHhhhhhhhhhccCchhHHHHHHHhhh-HHH-hCCCHHHHHHHHHHHHHHhccccccccCc-----
Confidence 1 1 346788999999999999999999996542 221 24556677778899999999999998863
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCC
Q 000979 754 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGG 833 (1202)
Q Consensus 754 ~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG 833 (1202)
-.|||||+|||+|||||+.+|++|++||||++|||+-..++.+++++++..|.|-+++||..+ -....+.|++.|.+ |
T Consensus 140 lhlsggqqqrvaiaralmmkpqvllfdeptaaldpeitaqvv~iikel~~tgitqvivthev~-va~k~as~vvyme~-g 217 (242)
T COG4161 140 LHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIKELAETGITQVIVTHEVE-VARKTASRVVYMEN-G 217 (242)
T ss_pred eecccchhhhHHHHHHHhcCCcEEeecCcccccCHHHHHHHHHHHHHHHhcCceEEEEEeehh-HHHhhhhheEeeec-C
Confidence 369999999999999999999999999999999999999999999999999999999999876 35677899999985 8
Q ss_pred EEEEEcCCC
Q 000979 834 QEIYVGPLG 842 (1202)
Q Consensus 834 ~~~~~G~~~ 842 (1202)
+++..|+.+
T Consensus 218 ~ive~g~a~ 226 (242)
T COG4161 218 HIVEQGDAS 226 (242)
T ss_pred eeEeecchh
Confidence 999999853
|
|
| >TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-35 Score=370.43 Aligned_cols=213 Identities=28% Similarity=0.446 Sum_probs=178.8
Q ss_pred CceeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCc
Q 000979 601 PHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGY 680 (1202)
Q Consensus 601 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~ 680 (1202)
...++++||+|+|+. +++++|+|+|++++|||.+||+||||||||||+|+|+|..+ +.+|+|.+||.
T Consensus 461 ~~~I~~~~vsf~Y~~-----------~~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~--p~~G~I~idg~ 527 (694)
T TIGR03375 461 QGEIEFRNVSFAYPG-----------QETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQ--PTEGSVLLDGV 527 (694)
T ss_pred cceEEEEEEEEEeCC-----------CCccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECCE
Confidence 356999999999952 23458999999999999999999999999999999999877 45899999999
Q ss_pred cCCc---ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCC-------ccccccccC
Q 000979 681 PKKQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELN-------PLRQSLVGL 750 (1202)
Q Consensus 681 ~~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-------~~~~~~~~~ 750 (1202)
++++ ..+|+.++||+|++.+++ .|++||+.++. ++.++++ +.++++..++. +-.|+.+|.
T Consensus 528 ~l~~~~~~~lr~~i~~v~Q~~~lf~-~TI~eNi~~~~-----~~~~~~~----i~~a~~~~~l~~~i~~lp~gl~T~i~e 597 (694)
T TIGR03375 528 DIRQIDPADLRRNIGYVPQDPRLFY-GTLRDNIALGA-----PYADDEE----ILRAAELAGVTEFVRRHPDGLDMQIGE 597 (694)
T ss_pred EhhhCCHHHHHhccEEECCChhhhh-hhHHHHHhCCC-----CCCCHHH----HHHHHHHcChHHHHHhCcccccceecC
Confidence 8654 457889999999999887 69999998752 1233332 44555555543 345777776
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEe
Q 000979 751 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 830 (1202)
Q Consensus 751 ~~~~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~ 830 (1202)
.+ ..||||||||++|||||+++|++|+||||||+||+.+++.+.+.|+++. +++|+|++||+++ ..+.+|++++|+
T Consensus 598 ~G-~~LSgGQrQRlalARall~~p~iliLDE~Ts~LD~~te~~i~~~l~~~~-~~~T~iiItHrl~--~~~~~D~iivl~ 673 (694)
T TIGR03375 598 RG-RSLSGGQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWL-AGKTLVLVTHRTS--LLDLVDRIIVMD 673 (694)
T ss_pred CC-CCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHh-CCCEEEEEecCHH--HHHhCCEEEEEe
Confidence 54 4699999999999999999999999999999999999999999999875 4899999999985 568899999998
Q ss_pred cCCEEEEEcCC
Q 000979 831 RGGQEIYVGPL 841 (1202)
Q Consensus 831 ~gG~~~~~G~~ 841 (1202)
+ |+++..|+.
T Consensus 674 ~-G~i~e~G~~ 683 (694)
T TIGR03375 674 N-GRIVADGPK 683 (694)
T ss_pred C-CEEEeeCCH
Confidence 5 899999985
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export. |
| >PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-35 Score=331.37 Aligned_cols=225 Identities=24% Similarity=0.328 Sum_probs=180.8
Q ss_pred eEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCC
Q 000979 604 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 683 (1202)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 683 (1202)
++++||++.|+... ..+ ...++.+|+|+||++++||+++|+||||||||||+++|+|... +.+|+|.++|.++.
T Consensus 4 l~~~nl~~~~~~~~---~~~-~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~sG~i~~~g~~~~ 77 (268)
T PRK10419 4 LNVSGLSHHYAHGG---LSG-KHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLES--PSQGNVSWRGEPLA 77 (268)
T ss_pred EEEeceEEEecCCc---ccc-ccCceeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEecc
Confidence 67899999884210 000 0113568999999999999999999999999999999999866 45899999998754
Q ss_pred c------ccccceEEEeecCC--CCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCCCCC
Q 000979 684 Q------ETFARISGYCEQND--IHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELN-PLRQSLVGLPGVS 754 (1202)
Q Consensus 684 ~------~~~~~~~~~v~q~~--~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-~~~~~~~~~~~~~ 754 (1202)
. ...++.++|++|++ .+.+..|+.|++.+..... ......+....++++++.+++. +..++. .+
T Consensus 78 ~~~~~~~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~~~~--~~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~ 150 (268)
T PRK10419 78 KLNRAQRKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHL--LSLDKAERLARASEMLRAVDLDDSVLDKR-----PP 150 (268)
T ss_pred ccChhHHHHHHhcEEEEEcChhhccCCCCCHHHHHHHHHHhh--ccCCHHHHHHHHHHHHHHcCCChhHhhCC-----Cc
Confidence 2 12456799999997 4667799999987653211 1122334445688999999996 455554 35
Q ss_pred CCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhcceEEEEecCC
Q 000979 755 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGG 833 (1202)
Q Consensus 755 ~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gG 833 (1202)
.||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++ |.|+|++||+++ .+.+.+|++++|. +|
T Consensus 151 ~LS~Ge~qrl~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~~~-~i~~~~d~i~~l~-~G 228 (268)
T PRK10419 151 QLSGGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLR-LVERFCQRVMVMD-NG 228 (268)
T ss_pred cCChHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHHcCcEEEEEECCHH-HHHHhCCEEEEEE-CC
Confidence 79999999999999999999999999999999999999999999998765 899999999986 5777899999998 58
Q ss_pred EEEEEcCCCc
Q 000979 834 QEIYVGPLGR 843 (1202)
Q Consensus 834 ~~~~~G~~~~ 843 (1202)
++++.|++++
T Consensus 229 ~i~~~g~~~~ 238 (268)
T PRK10419 229 QIVETQPVGD 238 (268)
T ss_pred EEeeeCChhh
Confidence 9999998754
|
|
| >PRK14275 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-35 Score=333.49 Aligned_cols=217 Identities=20% Similarity=0.266 Sum_probs=175.9
Q ss_pred ceeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCC--C-ceEEEEEEEc
Q 000979 602 HSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKT--G-GYITGNITIS 678 (1202)
Q Consensus 602 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~--~-~~~~G~i~~~ 678 (1202)
..++++|+++.|+ ++.+|+|+||++++||+++|+||||||||||+++|+|... + .+.+|+|.++
T Consensus 38 ~~l~~~~l~~~~~-------------~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~ 104 (286)
T PRK14275 38 PHVVAKNFSIYYG-------------EFEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFD 104 (286)
T ss_pred eEEEEeeeEEEEC-------------CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEEC
Confidence 3588999999874 2358999999999999999999999999999999999642 1 1258999999
Q ss_pred CccCCc-----ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCC----cccccccc
Q 000979 679 GYPKKQ-----ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELN----PLRQSLVG 749 (1202)
Q Consensus 679 g~~~~~-----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~----~~~~~~~~ 749 (1202)
|.++.. ...++.++|++|++.+++. ||.||+.+....+.. .+....++.+.++++.+++. +..+..
T Consensus 105 g~~i~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~-- 179 (286)
T PRK14275 105 GEDIYGKFTDEVLLRKKIGMVFQKPNPFPK-SIFDNIAYGPRLHGI--NDKKQLEEIVEKSLRKAALWDEVSDRLDKN-- 179 (286)
T ss_pred CEEhhhcccchHHhhhcEEEECCCCCCCcc-CHHHHHHhHHHhcCC--CcHHHHHHHHHHHHHHhCCccchhhHhhCC--
Confidence 987532 1245679999999988874 999999986543211 11222345577888888874 223332
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEE
Q 000979 750 LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLM 829 (1202)
Q Consensus 750 ~~~~~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l 829 (1202)
+..||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||+++|+++ ++.+.+||+++|
T Consensus 180 ---~~~LSgGq~qrv~LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~-~~tvIivsH~~~-~~~~~~d~i~~L 254 (286)
T PRK14275 180 ---ALGLSGGQQQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRG-SYTIMIVTHNMQ-QASRVSDYTMFF 254 (286)
T ss_pred ---hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCHH-HHHHhCCEEEEE
Confidence 457999999999999999999999999999999999999999999999865 689999999986 577889999999
Q ss_pred ecCCEEEEEcCCC
Q 000979 830 KRGGQEIYVGPLG 842 (1202)
Q Consensus 830 ~~gG~~~~~G~~~ 842 (1202)
++ |+++..|+++
T Consensus 255 ~~-G~i~~~g~~~ 266 (286)
T PRK14275 255 YE-GVLVEHAPTA 266 (286)
T ss_pred EC-CEEEEeCCHH
Confidence 85 8999999863
|
|
| >PRK15056 manganese/iron transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-36 Score=334.12 Aligned_cols=219 Identities=22% Similarity=0.394 Sum_probs=175.8
Q ss_pred eeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccC
Q 000979 603 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 682 (1202)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 682 (1202)
.++++|++++|+ +++.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++
T Consensus 6 ~l~~~~l~~~~~------------~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i 71 (272)
T PRK15056 6 GIVVNDVTVTWR------------NGHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVR--LASGKISILGQPT 71 (272)
T ss_pred eEEEEeEEEEec------------CCcEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEh
Confidence 488999999884 12458999999999999999999999999999999999876 4589999999876
Q ss_pred CcccccceEEEeecCCCCC--CCCCHHHHHHHHHHccCC-CCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHH
Q 000979 683 KQETFARISGYCEQNDIHS--PFVTIYESLLFSAWLRLS-PEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTE 759 (1202)
Q Consensus 683 ~~~~~~~~~~~v~q~~~~~--~~lTv~e~l~~~~~~~~~-~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgG 759 (1202)
.....++.++|++|++.+. ...+++|++.++...... ........++.++++++.+++.+..++.+ ..||||
T Consensus 72 ~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LSgG 146 (272)
T PRK15056 72 RQALQKNLVAYVPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRHRQI-----GELSGG 146 (272)
T ss_pred HHhhccceEEEeccccccccCCCcchhhheecccccccccccCCCHHHHHHHHHHHHHcCChhHhcCCc-----ccCCHH
Confidence 4322234689999997653 234788888654210000 00111223345678899999987777654 479999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCCEEEEEc
Q 000979 760 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVG 839 (1202)
Q Consensus 760 qrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G 839 (1202)
||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||+++ ++.+.+|+++++ + |+++..|
T Consensus 147 ~~qrv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~g~tviivsH~~~-~~~~~~d~v~~~-~-G~i~~~g 223 (272)
T PRK15056 147 QKKRVFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTHNLG-SVTEFCDYTVMV-K-GTVLASG 223 (272)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEE-C-CEEEeec
Confidence 999999999999999999999999999999999999999999877999999999986 577899999766 4 8999999
Q ss_pred CCCc
Q 000979 840 PLGR 843 (1202)
Q Consensus 840 ~~~~ 843 (1202)
++++
T Consensus 224 ~~~~ 227 (272)
T PRK15056 224 PTET 227 (272)
T ss_pred CHHh
Confidence 8754
|
|
| >PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-36 Score=371.62 Aligned_cols=213 Identities=28% Similarity=0.433 Sum_probs=179.4
Q ss_pred CceeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCc
Q 000979 601 PHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGY 680 (1202)
Q Consensus 601 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~ 680 (1202)
...++++||+|+|+. +++.+|+|+|++++|||.+||+||||||||||+++|+|..+ +.+|+|.+||.
T Consensus 336 ~~~i~~~~v~f~y~~-----------~~~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~--p~~G~I~i~g~ 402 (574)
T PRK11160 336 QVSLTLNNVSFTYPD-----------QPQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWD--PQQGEILLNGQ 402 (574)
T ss_pred CCeEEEEEEEEECCC-----------CCCcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECCE
Confidence 357999999999852 12358999999999999999999999999999999999876 45899999998
Q ss_pred cCCc---ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCcc------ccccccCC
Q 000979 681 PKKQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPL------RQSLVGLP 751 (1202)
Q Consensus 681 ~~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~------~~~~~~~~ 751 (1202)
++++ ..+|+.++||+|++.+++ .|++||+.++. ++.++ +.+.++++.+++.+. .|+.+|..
T Consensus 403 ~i~~~~~~~~r~~i~~v~Q~~~lf~-~ti~~Ni~~~~-----~~~~~----~~i~~al~~~~l~~~i~~p~GldT~vge~ 472 (574)
T PRK11160 403 PIADYSEAALRQAISVVSQRVHLFS-ATLRDNLLLAA-----PNASD----EALIEVLQQVGLEKLLEDDKGLNAWLGEG 472 (574)
T ss_pred EhhhCCHHHHHhheeEEcccchhhc-ccHHHHhhcCC-----CccCH----HHHHHHHHHcCCHHHHcCccccCchhcCC
Confidence 8654 456788999999998886 69999998752 12222 236777788777643 45666654
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEec
Q 000979 752 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKR 831 (1202)
Q Consensus 752 ~~~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~ 831 (1202)
+ ..||||||||++|||||+++|++|+||||||+||+.+++.+.+.|+++. +++|+|+++|+++ ..+.+|++++|++
T Consensus 473 g-~~LSgGqrqRialARall~~~~ililDE~ts~lD~~t~~~i~~~l~~~~-~~~tviiitHr~~--~~~~~d~i~~l~~ 548 (574)
T PRK11160 473 G-RQLSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHA-QNKTVLMITHRLT--GLEQFDRICVMDN 548 (574)
T ss_pred C-CCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecChh--HHHhCCEEEEEeC
Confidence 3 5699999999999999999999999999999999999999999999875 5899999999986 3567999999985
Q ss_pred CCEEEEEcCC
Q 000979 832 GGQEIYVGPL 841 (1202)
Q Consensus 832 gG~~~~~G~~ 841 (1202)
|+++..|+.
T Consensus 549 -G~i~~~g~~ 557 (574)
T PRK11160 549 -GQIIEQGTH 557 (574)
T ss_pred -CeEEEeCCH
Confidence 899999985
|
|
| >PRK14251 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-35 Score=328.37 Aligned_cols=215 Identities=24% Similarity=0.318 Sum_probs=175.3
Q ss_pred eeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCC--c-eEEEEEEEcC
Q 000979 603 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG--G-YITGNITISG 679 (1202)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~--~-~~~G~i~~~g 679 (1202)
.++++|++++|+ .+.+|+|+|+++++||+++|+||||||||||+++|+|..++ . +.+|+|.++|
T Consensus 4 ~l~~~~l~~~~~-------------~~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g 70 (251)
T PRK14251 4 IISAKDVHLSYG-------------NYEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEG 70 (251)
T ss_pred eEEEEeeEEEEC-------------CeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECC
Confidence 478999999884 23589999999999999999999999999999999997641 1 3589999999
Q ss_pred ccCCc-----ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCc----cccccccC
Q 000979 680 YPKKQ-----ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP----LRQSLVGL 750 (1202)
Q Consensus 680 ~~~~~-----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~----~~~~~~~~ 750 (1202)
.+... ...++.++|++|++.+++ .||+||+.+...... ....+..++.++++++.+++.. ..+..
T Consensus 71 ~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~--- 144 (251)
T PRK14251 71 QNIYGSKMDLVELRKEVGMVFQQPTPFP-FSVYDNVAYGLKIAG--VKDKELIDQRVEESLKQAAIWKETKDNLDRN--- 144 (251)
T ss_pred EEcccccchHHHhhccEEEEecCCccCC-CcHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHHcCCCcchHHHhccC---
Confidence 87532 124567999999998886 799999987643221 1112223345778888888842 22322
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEe
Q 000979 751 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 830 (1202)
Q Consensus 751 ~~~~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~ 830 (1202)
...||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++. ++.|||++||+++ ++.+.+|++++|+
T Consensus 145 --~~~LS~Gq~qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~~~tiiiisH~~~-~~~~~~d~i~~l~ 220 (251)
T PRK14251 145 --AQAFSGGQQQRICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELK-HQYTFIMVTHNLQ-QAGRISDQTAFLM 220 (251)
T ss_pred --hhhCCHHHHHHHHHHHHHhcCCCEEEecCCCccCCHHHHHHHHHHHHHHH-cCCeEEEEECCHH-HHHhhcCEEEEEE
Confidence 45799999999999999999999999999999999999999999999985 4789999999986 5778899999998
Q ss_pred cCCEEEEEcCC
Q 000979 831 RGGQEIYVGPL 841 (1202)
Q Consensus 831 ~gG~~~~~G~~ 841 (1202)
+ |+++..|+.
T Consensus 221 ~-G~i~~~~~~ 230 (251)
T PRK14251 221 N-GDLIEAGPT 230 (251)
T ss_pred C-CEEEEeCCH
Confidence 5 899999885
|
|
| >PRK14261 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-35 Score=328.62 Aligned_cols=219 Identities=24% Similarity=0.257 Sum_probs=175.6
Q ss_pred eeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCc---eEEEEEEEcC
Q 000979 603 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG---YITGNITISG 679 (1202)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~---~~~G~i~~~g 679 (1202)
.++++|+++.|+ ++.+|+|+||++++||+++|+||||||||||+++|+|...+. +.+|+|.++|
T Consensus 6 ~i~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g 72 (253)
T PRK14261 6 ILSTKNLNLWYG-------------EKHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNG 72 (253)
T ss_pred eEEEeeeEEEEC-------------CeeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECC
Confidence 478999999874 235899999999999999999999999999999999974321 2479999999
Q ss_pred ccCCc-----ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCC
Q 000979 680 YPKKQ-----ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVS 754 (1202)
Q Consensus 680 ~~~~~-----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~ 754 (1202)
.++.. ...++.++|++|++.+++. ||+||+.+....+.. ....+.++.++++++.+++.+....... ....
T Consensus 73 ~~~~~~~~~~~~~~~~i~~~~q~~~~~~~-tv~eni~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~l~~~~~-~~~~ 148 (253)
T PRK14261 73 ENIMDSGADVVALRRKIGMVFQRPNPFPK-SIYENVAYGPRIHGE--KNKKTLDTIVEKSLKGAALWDEVKDRLH-DSAL 148 (253)
T ss_pred EEccccccchhhhhceEEEEecCCccCcc-cHHHHHHhhHHhcCC--CCHHHHHHHHHHHHHHhcCchhhHHHhh-cChh
Confidence 87642 2345679999999988874 999999987543321 1222334557788888887532111111 1245
Q ss_pred CCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCCE
Q 000979 755 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQ 834 (1202)
Q Consensus 755 ~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~ 834 (1202)
.||||||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++++ ++|||++||++. ++.+.+|++++|++ |+
T Consensus 149 ~LS~G~~qrv~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~-~~tvii~sh~~~-~~~~~~d~v~~l~~-G~ 225 (253)
T PRK14261 149 SLSGGQQQRLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKK-EYTVIIVTHNMQ-QAARVSDYTGFMYL-GK 225 (253)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhh-CceEEEEEcCHH-HHHhhCCEEEEEEC-CE
Confidence 7999999999999999999999999999999999999999999999865 689999999986 57788999999985 89
Q ss_pred EEEEcCC
Q 000979 835 EIYVGPL 841 (1202)
Q Consensus 835 ~~~~G~~ 841 (1202)
++..|++
T Consensus 226 i~~~g~~ 232 (253)
T PRK14261 226 LIEFDKT 232 (253)
T ss_pred EEEcCCH
Confidence 9999886
|
|
| >TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-35 Score=362.65 Aligned_cols=220 Identities=22% Similarity=0.337 Sum_probs=182.5
Q ss_pred eEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCC
Q 000979 604 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 683 (1202)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 683 (1202)
++++|++++|. ++++|+||||++++||+++|+||||||||||+++|+|..++++.+|+|.++|.++.
T Consensus 2 l~i~~l~~~~~-------------~~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~ 68 (500)
T TIGR02633 2 LEMKGIVKTFG-------------GVKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLK 68 (500)
T ss_pred EEEEeEEEEeC-------------CeEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECC
Confidence 57889998873 24589999999999999999999999999999999998654235899999998764
Q ss_pred ccc----ccceEEEeecCCCCCCCCCHHHHHHHHHHccCCC-CCCHHHHHHHHHHHHHHcCCCccc-cccccCCCCCCCC
Q 000979 684 QET----FARISGYCEQNDIHSPFVTIYESLLFSAWLRLSP-EVDSETRKMFIDEVMELVELNPLR-QSLVGLPGVSGLS 757 (1202)
Q Consensus 684 ~~~----~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~-~~~~~~~~~~~~~~l~~l~l~~~~-~~~~~~~~~~~LS 757 (1202)
... .++.++||+|++.+++.+||+||+.+........ ....++.+++++++++.+++.+.. ++. ++.||
T Consensus 69 ~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~~LS 143 (500)
T TIGR02633 69 ASNIRDTERAGIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVTRP-----VGDYG 143 (500)
T ss_pred CCCHHHHHhCCEEEEeeccccCCCCcHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCCcccCc-----hhhCC
Confidence 311 2456899999999999999999998864332111 122333445688999999997654 333 35799
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCCEEEE
Q 000979 758 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIY 837 (1202)
Q Consensus 758 gGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~ 837 (1202)
|||||||+|||||+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||+++ ++.+.||++++|++ |++++
T Consensus 144 gG~~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiitHd~~-~~~~~~d~i~~l~~-G~i~~ 221 (500)
T TIGR02633 144 GGQQQLVEIAKALNKQARLLILDEPSSSLTEKETEILLDIIRDLKAHGVACVYISHKLN-EVKAVCDTICVIRD-GQHVA 221 (500)
T ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHH-HHHHhCCEEEEEeC-CeEee
Confidence 99999999999999999999999999999999999999999999878999999999986 57788999999985 79999
Q ss_pred EcCCCc
Q 000979 838 VGPLGR 843 (1202)
Q Consensus 838 ~G~~~~ 843 (1202)
.|++++
T Consensus 222 ~~~~~~ 227 (500)
T TIGR02633 222 TKDMST 227 (500)
T ss_pred ecCccc
Confidence 998764
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). |
| >cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-35 Score=322.21 Aligned_cols=192 Identities=27% Similarity=0.352 Sum_probs=160.0
Q ss_pred CceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCCcccccceEEEeecCCCCCCCCCH
Q 000979 627 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTI 706 (1202)
Q Consensus 627 ~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~lTv 706 (1202)
+++++|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+... ..+...+.+.+||
T Consensus 33 ~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--p~~G~i~~~g~~~~~---------~~~~~~~~~~~tv 101 (224)
T cd03220 33 GEFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYP--PDSGTVTVRGRVSSL---------LGLGGGFNPELTG 101 (224)
T ss_pred CCeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEchh---------hcccccCCCCCcH
Confidence 45679999999999999999999999999999999999876 458999999976421 1112344567999
Q ss_pred HHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCC
Q 000979 707 YESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 786 (1202)
Q Consensus 707 ~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgL 786 (1202)
+||+.+...... ....+.++.++++++.+++.+..++.+ +.||||||||++|||+|+.+|++|+|||||+||
T Consensus 102 ~enl~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrv~laral~~~p~llllDEP~~gL 173 (224)
T cd03220 102 RENIYLNGRLLG---LSRKEIDEKIDEIIEFSELGDFIDLPV-----KTYSSGMKARLAFAIATALEPDILLIDEVLAVG 173 (224)
T ss_pred HHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCChhhhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccC
Confidence 999988754321 223334456788899999987777654 579999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCCEEEEEc
Q 000979 787 DARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVG 839 (1202)
Q Consensus 787 D~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G 839 (1202)
|+.++..+.+.|++++++|+|||++||+++ ++.+.+|++++|.+ |+++..|
T Consensus 174 D~~~~~~~~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-G~i~~~g 224 (224)
T cd03220 174 DAAFQEKCQRRLRELLKQGKTVILVSHDPS-SIKRLCDRALVLEK-GKIRFDG 224 (224)
T ss_pred CHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEecC
Confidence 999999999999998777899999999986 57788999999984 8888765
|
Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2. |
| >PRK14248 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-35 Score=330.24 Aligned_cols=216 Identities=20% Similarity=0.250 Sum_probs=175.0
Q ss_pred eeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCC--C-ceEEEEEEEcC
Q 000979 603 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKT--G-GYITGNITISG 679 (1202)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~--~-~~~~G~i~~~g 679 (1202)
.++++|+++.|+ ++.+|+|+||++++||+++|+||||||||||+++|+|... + .+.+|+|.++|
T Consensus 21 ~l~~~~l~~~~~-------------~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g 87 (268)
T PRK14248 21 ILEVKDLSIYYG-------------EKRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEG 87 (268)
T ss_pred eEEEEEEEEEeC-------------CceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECC
Confidence 488999999884 2358999999999999999999999999999999999642 1 14589999999
Q ss_pred ccCCc-----ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCc----cccccccC
Q 000979 680 YPKKQ-----ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP----LRQSLVGL 750 (1202)
Q Consensus 680 ~~~~~-----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~----~~~~~~~~ 750 (1202)
.++.. ...++.++|++|++.+++. |++||+.+...... .......++.+++.++.+++.+ ..++.
T Consensus 88 ~~i~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~--- 161 (268)
T PRK14248 88 LNILDSNINVVNLRREIGMVFQKPNPFPK-SIYNNITHALKYAG--ERRKSVLDEIVEESLTKAALWDEVKDRLHSS--- 161 (268)
T ss_pred EEcccccccHHHHhccEEEEecCCccCcc-cHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHHcCCCcchHHHHhcC---
Confidence 87642 1345679999999988874 99999987643221 1112223345677888888742 22332
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEe
Q 000979 751 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 830 (1202)
Q Consensus 751 ~~~~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~ 830 (1202)
+..||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||++||+++ ++.+.|||+++|+
T Consensus 162 --~~~LSgGq~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~-~~~~~~d~v~~l~ 237 (268)
T PRK14248 162 --ALSLSGGQQQRLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKE-EYSIIIVTHNMQ-QALRVSDRTAFFL 237 (268)
T ss_pred --cccCCHHHHHHHHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhc-CCEEEEEEeCHH-HHHHhCCEEEEEE
Confidence 457999999999999999999999999999999999999999999999865 689999999986 5778999999998
Q ss_pred cCCEEEEEcCCC
Q 000979 831 RGGQEIYVGPLG 842 (1202)
Q Consensus 831 ~gG~~~~~G~~~ 842 (1202)
+ |++++.|+++
T Consensus 238 ~-G~i~~~~~~~ 248 (268)
T PRK14248 238 N-GDLVEYDQTE 248 (268)
T ss_pred C-CEEEEeCCHH
Confidence 5 8999999863
|
|
| >PRK14265 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-35 Score=330.85 Aligned_cols=217 Identities=19% Similarity=0.231 Sum_probs=175.4
Q ss_pred CceeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCc---eEEEEEEE
Q 000979 601 PHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG---YITGNITI 677 (1202)
Q Consensus 601 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~---~~~G~i~~ 677 (1202)
+..++++|+++.|. ++.+|+|+||++++||+++|+||||||||||+++|+|...+. +.+|+|.+
T Consensus 18 ~~~l~~~nl~~~~~-------------~~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~ 84 (274)
T PRK14265 18 HSVFEVEGVKVFYG-------------GFLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLY 84 (274)
T ss_pred CceEEEeeEEEEeC-------------CeEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEE
Confidence 34688999999873 235899999999999999999999999999999999975321 24799999
Q ss_pred cCccCCc-----ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCc----cccccc
Q 000979 678 SGYPKKQ-----ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP----LRQSLV 748 (1202)
Q Consensus 678 ~g~~~~~-----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~----~~~~~~ 748 (1202)
+|.++.. ..+++.++|++|++.+++. ||.||+.+....+. ... ..++.+++.++.+++.. ..+..
T Consensus 85 ~g~~l~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~~nl~~~~~~~~---~~~-~~~~~~~~~l~~~~l~~~l~~~~~~~- 158 (274)
T PRK14265 85 RDRNIYDSQINSVKLRRQVGMVFQRPNPFPK-SIYENIAFAPRANG---YKG-NLDELVEDSLRRAAIWEEVKDKLKEK- 158 (274)
T ss_pred CCEecccccchhHHHhhcEEEEccCCccccc-cHHHHHHhHHHhcC---chH-HHHHHHHHHHHHcccchhhHHHhcCC-
Confidence 9987532 2345679999999888874 99999988653321 111 12234567778777642 22322
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEE
Q 000979 749 GLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFL 828 (1202)
Q Consensus 749 ~~~~~~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~ 828 (1202)
+..||||||||++|||||+.+|++|||||||+|||+.++..+.+.|+++++ ++|||+++|+++ .+.+.+|++++
T Consensus 159 ----~~~LSgGq~qrv~LAraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tiii~sH~~~-~~~~~~d~i~~ 232 (274)
T PRK14265 159 ----GTALSGGQQQRLCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKE-QYTIIMVTHNMQ-QASRVADWTAF 232 (274)
T ss_pred ----cccCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhCCEEEE
Confidence 457999999999999999999999999999999999999999999999864 789999999986 57889999999
Q ss_pred Ee--------cCCEEEEEcCCC
Q 000979 829 MK--------RGGQEIYVGPLG 842 (1202)
Q Consensus 829 l~--------~gG~~~~~G~~~ 842 (1202)
|+ +.|+++..|+++
T Consensus 233 l~~~~~~~~~~~G~~~~~g~~~ 254 (274)
T PRK14265 233 FNTEIDEYGKRRGKLVEFSPTE 254 (274)
T ss_pred EecccccccccCceEEEeCCHH
Confidence 97 258999999974
|
|
| >PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-36 Score=324.65 Aligned_cols=210 Identities=22% Similarity=0.353 Sum_probs=171.4
Q ss_pred eeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccC
Q 000979 603 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 682 (1202)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 682 (1202)
.++++|+++.|. ++++|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+.
T Consensus 7 ~i~~~~l~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~ 71 (225)
T PRK10247 7 LLQLQNVGYLAG-------------DAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLIS--PTSGTLLFEGEDI 71 (225)
T ss_pred eEEEeccEEeeC-------------CceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccC--CCCCeEEECCEEc
Confidence 488999998873 2358999999999999999999999999999999999865 4589999999865
Q ss_pred Cc---ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCCCCCCCCH
Q 000979 683 KQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELN-PLRQSLVGLPGVSGLST 758 (1202)
Q Consensus 683 ~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-~~~~~~~~~~~~~~LSg 758 (1202)
.. ...++.++|++|++.+++ .|++||+.+....+.. .. .++.++++++.+++. ...++. ++.|||
T Consensus 72 ~~~~~~~~~~~i~~~~q~~~l~~-~tv~enl~~~~~~~~~---~~--~~~~~~~~l~~~~l~~~~~~~~-----~~~LS~ 140 (225)
T PRK10247 72 STLKPEIYRQQVSYCAQTPTLFG-DTVYDNLIFPWQIRNQ---QP--DPAIFLDDLERFALPDTILTKN-----IAELSG 140 (225)
T ss_pred CcCCHHHHHhccEEEeccccccc-ccHHHHHHhHHhhcCC---Ch--HHHHHHHHHHHcCCChHHhcCC-----cccCCH
Confidence 32 224567899999988887 5999999876443211 11 123467899999995 344544 357999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhcceEEEEecCCEEEE
Q 000979 759 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIY 837 (1202)
Q Consensus 759 GqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~ 837 (1202)
|||||++|||||+.+|++++|||||+|||+.++..+.+.|++++++ |.|||++||+++ .+ +.+|++++|++.+..+.
T Consensus 141 G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~-~~-~~~d~i~~l~~~~~~~~ 218 (225)
T PRK10247 141 GEKQRISLIRNLQFMPKVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKD-EI-NHADKVITLQPHAGEMQ 218 (225)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECChH-HH-HhCCEEEEEecccchHh
Confidence 9999999999999999999999999999999999999999998764 899999999986 34 57999999965454555
Q ss_pred EcC
Q 000979 838 VGP 840 (1202)
Q Consensus 838 ~G~ 840 (1202)
.|.
T Consensus 219 ~~~ 221 (225)
T PRK10247 219 EAR 221 (225)
T ss_pred hhh
Confidence 554
|
|
| >PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-35 Score=362.52 Aligned_cols=212 Identities=21% Similarity=0.306 Sum_probs=181.9
Q ss_pred eeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccC
Q 000979 603 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 682 (1202)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 682 (1202)
.++++|++++|. ++.+|+|+||++++||+++|+|||||||||||++|+|... +.+|+|.++|.++
T Consensus 11 ~l~~~~l~~~~~-------------~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~ 75 (510)
T PRK15439 11 LLCARSISKQYS-------------GVEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVP--PDSGTLEIGGNPC 75 (510)
T ss_pred eEEEEeEEEEeC-------------CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEC
Confidence 488999999884 2458999999999999999999999999999999999876 4589999999876
Q ss_pred Ccc---c-ccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCH
Q 000979 683 KQE---T-FARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLST 758 (1202)
Q Consensus 683 ~~~---~-~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSg 758 (1202)
... . .++.++|++|++.+++.+||+||+.+.... ..+.+++++++++.+++.+..++.+ +.|||
T Consensus 76 ~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~-------~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSg 143 (510)
T PRK15439 76 ARLTPAKAHQLGIYLVPQEPLLFPNLSVKENILFGLPK-------RQASMQKMKQLLAALGCQLDLDSSA-----GSLEV 143 (510)
T ss_pred CCCCHHHHHhCCEEEEeccCccCCCCcHHHHhhccccc-------chHHHHHHHHHHHHcCCCccccCCh-----hhCCH
Confidence 431 1 234689999999999999999999875311 1223456789999999987777654 57999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCCEEEEE
Q 000979 759 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYV 838 (1202)
Q Consensus 759 GqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~ 838 (1202)
||||||+|||||+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||+++ .+.+.||++++|++ |++++.
T Consensus 144 G~~qrv~la~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~-~~~~~~d~i~~l~~-G~i~~~ 221 (510)
T PRK15439 144 ADRQIVEILRGLMRDSRILILDEPTASLTPAETERLFSRIRELLAQGVGIVFISHKLP-EIRQLADRISVMRD-GTIALS 221 (510)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEe
Confidence 9999999999999999999999999999999999999999999878999999999986 57789999999985 899999
Q ss_pred cCCCc
Q 000979 839 GPLGR 843 (1202)
Q Consensus 839 G~~~~ 843 (1202)
|++++
T Consensus 222 g~~~~ 226 (510)
T PRK15439 222 GKTAD 226 (510)
T ss_pred cChHH
Confidence 98754
|
|
| >PRK13538 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-35 Score=318.82 Aligned_cols=199 Identities=23% Similarity=0.294 Sum_probs=165.7
Q ss_pred eEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCC
Q 000979 604 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 683 (1202)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 683 (1202)
++++|++++++ ++.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+..
T Consensus 2 l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--p~~G~v~~~g~~~~ 66 (204)
T PRK13538 2 LEARNLACERD-------------ERILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLAR--PDAGEVLWQGEPIR 66 (204)
T ss_pred eEEEEEEEEEC-------------CEEEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEEcc
Confidence 56788888773 2458999999999999999999999999999999999876 45899999998754
Q ss_pred c--ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHH
Q 000979 684 Q--ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQR 761 (1202)
Q Consensus 684 ~--~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqr 761 (1202)
. ...++.++|++|++.+++.+|+.||+.+...... . ..+++++++++.+|+.+..++. ++.||||||
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~tv~e~l~~~~~~~~---~---~~~~~~~~~l~~~gl~~~~~~~-----~~~LS~G~~ 135 (204)
T PRK13538 67 RQRDEYHQDLLYLGHQPGIKTELTALENLRFYQRLHG---P---GDDEALWEALAQVGLAGFEDVP-----VRQLSAGQQ 135 (204)
T ss_pred cchHHhhhheEEeCCccccCcCCcHHHHHHHHHHhcC---c---cHHHHHHHHHHHcCCHHHhhCC-----hhhcCHHHH
Confidence 2 2345678999999999999999999988754321 1 1234578899999998766665 357999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEE
Q 000979 762 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLM 829 (1202)
Q Consensus 762 qRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l 829 (1202)
||++|||||+++|++|+|||||+|||+.++..+.+.|++++++|.|+|++||+++ .+.+.-+|++.+
T Consensus 136 qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~-~i~~~~~~~~~~ 202 (204)
T PRK13538 136 RRVALARLWLTRAPLWILDEPFTAIDKQGVARLEALLAQHAEQGGMVILTTHQDL-PVASDKVRKLRL 202 (204)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecChh-hhccCCceEEec
Confidence 9999999999999999999999999999999999999998777899999999986 354444555544
|
|
| >PRK14254 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-35 Score=330.16 Aligned_cols=214 Identities=22% Similarity=0.280 Sum_probs=175.0
Q ss_pred ceeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCC---ceEEEEEEEc
Q 000979 602 HSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG---GYITGNITIS 678 (1202)
Q Consensus 602 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~---~~~~G~i~~~ 678 (1202)
..++++|+++.|. ++.+|+|+||+|++||+++|+||||||||||+++|+|...+ .+.+|+|.++
T Consensus 38 ~~l~i~~l~~~~~-------------~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~ 104 (285)
T PRK14254 38 TVIEARDLNVFYG-------------DEQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFR 104 (285)
T ss_pred ceEEEEEEEEEEC-------------CEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEEC
Confidence 3588999999873 24589999999999999999999999999999999998542 1358999999
Q ss_pred CccCCc-----ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCc----ccccccc
Q 000979 679 GYPKKQ-----ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP----LRQSLVG 749 (1202)
Q Consensus 679 g~~~~~-----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~----~~~~~~~ 749 (1202)
|.++.. ...++.++|++|++.+++. ||.||+.+....+. ... ..+++++++++.+++.+ ..+..
T Consensus 105 G~~i~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~---~~~-~~~~~~~~~l~~~~l~~~i~~~~~~~-- 177 (285)
T PRK14254 105 GKNVYDADVDPVALRRRIGMVFQKPNPFPK-SIYDNVAYGLKIQG---YDG-DIDERVEESLRRAALWDEVKDQLDSS-- 177 (285)
T ss_pred CEEccccccchHhhhccEEEEecCCccCcC-CHHHHHHHHHHHcC---CcH-HHHHHHHHHHHHcCCCchhHHHHhCC--
Confidence 987532 2346689999999888875 99999988654331 112 23445788999998853 23332
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEE-E
Q 000979 750 LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELF-L 828 (1202)
Q Consensus 750 ~~~~~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~-~ 828 (1202)
+..||||||||++|||||+.+|+||||||||+|||+.++..+.+.|+++++ ++|||++||+++ .+.+.+||++ +
T Consensus 178 ---~~~LSgGe~qrv~LAraL~~~p~lLLLDEPts~LD~~~~~~l~~~L~~~~~-~~tiii~tH~~~-~i~~~~dri~v~ 252 (285)
T PRK14254 178 ---GLDLSGGQQQRLCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAE-EYTVVIVTHNMQ-QAARISDKTAVF 252 (285)
T ss_pred ---cccCCHHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHhhcCEEEEE
Confidence 357999999999999999999999999999999999999999999999976 489999999986 5778899976 4
Q ss_pred EecCCEEEEEcCC
Q 000979 829 MKRGGQEIYVGPL 841 (1202)
Q Consensus 829 l~~gG~~~~~G~~ 841 (1202)
|. +|+++..|++
T Consensus 253 l~-~G~i~~~g~~ 264 (285)
T PRK14254 253 LT-GGELVEFDDT 264 (285)
T ss_pred ee-CCEEEEeCCH
Confidence 56 5899999885
|
|
| >PRK14255 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-35 Score=326.99 Aligned_cols=215 Identities=24% Similarity=0.315 Sum_probs=173.8
Q ss_pred eeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCC--Cc-eEEEEEEEcC
Q 000979 603 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKT--GG-YITGNITISG 679 (1202)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~--~~-~~~G~i~~~g 679 (1202)
.++++|+++.|+ ++.+|+|+||++++||+++|+||||||||||+++|+|... +. +.+|+|.++|
T Consensus 5 ~l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g 71 (252)
T PRK14255 5 IITSSDVHLFYG-------------KFEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRG 71 (252)
T ss_pred eEEEEeEEEEEC-------------CeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcC
Confidence 478999999874 2458999999999999999999999999999999999743 21 2479999999
Q ss_pred ccCCc-----ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCc----cccccccC
Q 000979 680 YPKKQ-----ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP----LRQSLVGL 750 (1202)
Q Consensus 680 ~~~~~-----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~----~~~~~~~~ 750 (1202)
.++.. ...++.++|++|++.+++ .|++||+.+....+.. ...+..++.+.+.++.+++.. ..+..
T Consensus 72 ~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~--- 145 (252)
T PRK14255 72 QNIYAPNEDVVQLRKQVGMVFQQPNPFP-FSIYENVIYGLRLAGV--KDKAVLDEAVETSLKQAAIWDEVKDHLHES--- 145 (252)
T ss_pred EEcccccccHHHhcCeEEEEECCCccCC-CcHHHHHHHHHHHcCC--CCHHHHHHHHHHHHHHcCCccchhhHHhcC---
Confidence 87631 234567999999998888 7999999886543211 112222344567777777642 22222
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEe
Q 000979 751 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 830 (1202)
Q Consensus 751 ~~~~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~ 830 (1202)
+..||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ +.|+|++||+++ .+.+.+|++++|+
T Consensus 146 --~~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~vsH~~~-~~~~~~d~i~~l~ 221 (252)
T PRK14255 146 --ALSLSGGQQQRVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRD-QYTIILVTHSMH-QASRISDKTAFFL 221 (252)
T ss_pred --cccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHh-CCEEEEEECCHH-HHHHhCCEEEEEE
Confidence 457999999999999999999999999999999999999999999999865 589999999986 5778899999998
Q ss_pred cCCEEEEEcCC
Q 000979 831 RGGQEIYVGPL 841 (1202)
Q Consensus 831 ~gG~~~~~G~~ 841 (1202)
+ |+++..|++
T Consensus 222 ~-G~i~~~~~~ 231 (252)
T PRK14255 222 T-GNLIEFADT 231 (252)
T ss_pred C-CEEEEeCCH
Confidence 4 899999886
|
|
| >cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-36 Score=318.17 Aligned_cols=196 Identities=27% Similarity=0.338 Sum_probs=166.9
Q ss_pred eEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCC
Q 000979 604 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 683 (1202)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 683 (1202)
++++|+++.|+ ++.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+..
T Consensus 1 l~i~~l~~~~~-------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~ 65 (201)
T cd03231 1 LEADELTCERD-------------GRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSP--PLAGRVLLNGGPLD 65 (201)
T ss_pred CEEEEEEEEeC-------------CceeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEecc
Confidence 35788888773 2358999999999999999999999999999999999876 45899999998753
Q ss_pred c--ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHH
Q 000979 684 Q--ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQR 761 (1202)
Q Consensus 684 ~--~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqr 761 (1202)
. ...++.++|++|++.+++.+|++||+.+.... . .+++++++++.+++.+..++. ++.||||||
T Consensus 66 ~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~-----~----~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~ 131 (201)
T cd03231 66 FQRDSIARGLLYLGHAPGIKTTLSVLENLRFWHAD-----H----SDEQVEEALARVGLNGFEDRP-----VAQLSAGQQ 131 (201)
T ss_pred cccHHhhhheEEeccccccCCCcCHHHHHHhhccc-----c----cHHHHHHHHHHcCChhhhcCc-----hhhCCHHHH
Confidence 2 23456799999999888899999999875311 1 123468899999998776665 357999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEE
Q 000979 762 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLM 829 (1202)
Q Consensus 762 qRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l 829 (1202)
||++|||||+.+|++|+|||||+|||+.++..+.+.|+++.++|+|+|++||++. ++.+.+|+++.+
T Consensus 132 qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~-~~~~~~~~~~~~ 198 (201)
T cd03231 132 RRVALARLLLSGRPLWILDEPTTALDKAGVARFAEAMAGHCARGGMVVLTTHQDL-GLSEAGARELDL 198 (201)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCch-hhhhccceeEec
Confidence 9999999999999999999999999999999999999998777999999999986 577889998876
|
The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. |
| >cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-36 Score=331.75 Aligned_cols=210 Identities=25% Similarity=0.399 Sum_probs=164.2
Q ss_pred eEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCC
Q 000979 604 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 683 (1202)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 683 (1202)
++++|+++.|+. +++.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+..
T Consensus 1 i~~~~l~~~~~~-----------~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~ 67 (237)
T cd03252 1 ITFEHVRFRYKP-----------DGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYV--PENGRVLVDGHDLA 67 (237)
T ss_pred CEEEEEEEecCC-----------CCccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC--CCCCEEEECCeehH
Confidence 357888888741 12458999999999999999999999999999999999876 45899999998753
Q ss_pred c---ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHH-----HHHHHHHHHc--CCCccccccccCCCC
Q 000979 684 Q---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRK-----MFIDEVMELV--ELNPLRQSLVGLPGV 753 (1202)
Q Consensus 684 ~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~-----~~~~~~l~~l--~l~~~~~~~~~~~~~ 753 (1202)
. ...++.++|++|++.+++ .||+||+.+... ........ ...++.++.+ ++....+. .+
T Consensus 68 ~~~~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~-----~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~-----~~ 136 (237)
T cd03252 68 LADPAWLRRQVGVVLQENVLFN-RSIRDNIALADP-----GMSMERVIEAAKLAGAHDFISELPEGYDTIVGE-----QG 136 (237)
T ss_pred hcCHHHHhhcEEEEcCCchhcc-chHHHHhhccCC-----CCCHHHHHHHHHHcCcHHHHHhCcccccchhhc-----CC
Confidence 2 234567999999987765 699999976421 11111100 0112333333 33322222 24
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCC
Q 000979 754 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGG 833 (1202)
Q Consensus 754 ~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG 833 (1202)
+.|||||||||+|||||+.+|++|+|||||+|||+.++..+.+.|++++ +|+|||++||+++ ++ +.||++++|++ |
T Consensus 137 ~~LSgG~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~~~tiii~sH~~~-~~-~~~d~v~~l~~-G 212 (237)
T cd03252 137 AGLSGGQRQRIAIARALIHNPRILIFDEATSALDYESEHAIMRNMHDIC-AGRTVIIIAHRLS-TV-KNADRIIVMEK-G 212 (237)
T ss_pred CcCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhc-CCCEEEEEeCCHH-HH-HhCCEEEEEEC-C
Confidence 6799999999999999999999999999999999999999999999986 4899999999986 34 57999999985 8
Q ss_pred EEEEEcCC
Q 000979 834 QEIYVGPL 841 (1202)
Q Consensus 834 ~~~~~G~~ 841 (1202)
++++.|++
T Consensus 213 ~i~~~~~~ 220 (237)
T cd03252 213 RIVEQGSH 220 (237)
T ss_pred EEEEEcCH
Confidence 99999986
|
coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. |
| >PRK14263 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-35 Score=327.68 Aligned_cols=220 Identities=19% Similarity=0.208 Sum_probs=177.7
Q ss_pred ceeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCc---eEEEEEEEc
Q 000979 602 HSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG---YITGNITIS 678 (1202)
Q Consensus 602 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~---~~~G~i~~~ 678 (1202)
..+..+++++.|. ++.+|+|+||++++||+++|+||||||||||+++|+|...+. +.+|+|.++
T Consensus 7 ~~~~~~~~~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~ 73 (261)
T PRK14263 7 IVMDCKLDKIFYG-------------NFMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFL 73 (261)
T ss_pred ceEEEEeEEEEeC-------------CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEEC
Confidence 3467777777662 356899999999999999999999999999999999976531 258999999
Q ss_pred CccCCc-----ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCC
Q 000979 679 GYPKKQ-----ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGV 753 (1202)
Q Consensus 679 g~~~~~-----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~ 753 (1202)
|.++.. ..+++.++|++|++.++ .+|+.||+.+....+. . ..+.+..++++++.+++.+..+.... ...
T Consensus 74 g~~i~~~~~~~~~~~~~i~~v~q~~~~~-~~tv~enl~~~~~~~~---~-~~~~~~~~~~~l~~~~l~~~i~~~~~-~~~ 147 (261)
T PRK14263 74 GQDVYGKGVDPVVVRRYIGMVFQQPNPF-SMSIFDNVAFGLRLNR---Y-KGDLGDRVKHALQGAALWDEVKDKLK-VSG 147 (261)
T ss_pred CEeccccccchHhhhhceEEEecCCccc-cccHHHHHHHHHhhcC---c-hHHHHHHHHHHHHHcCCchhhhhhhh-CCc
Confidence 987632 23456799999998877 5999999998764331 1 12234567889999998543222211 124
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEe---
Q 000979 754 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK--- 830 (1202)
Q Consensus 754 ~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~--- 830 (1202)
+.||||||||++|||||+++|++|+|||||+|||+.++..+.+.|++++ +++|+|++||+++ ++.+.+||+++|+
T Consensus 148 ~~LS~G~~qrv~laral~~~p~llllDEPtsgLD~~~~~~l~~~l~~~~-~~~tii~isH~~~-~i~~~~d~v~~l~~~~ 225 (261)
T PRK14263 148 LSLSGGQQQRLCIARAIATEPEVLLLDEPCSALDPIATRRVEELMVELK-KDYTIALVTHNMQ-QAIRVADTTAFFSVDI 225 (261)
T ss_pred ccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCHH-HHHHhCCEEEEEeccc
Confidence 5799999999999999999999999999999999999999999999985 4799999999986 5788999999996
Q ss_pred ----cCCEEEEEcCCC
Q 000979 831 ----RGGQEIYVGPLG 842 (1202)
Q Consensus 831 ----~gG~~~~~G~~~ 842 (1202)
++|+++..|+.+
T Consensus 226 ~~~~~~G~i~~~g~~~ 241 (261)
T PRK14263 226 SQGTRTGYLVEMGPTA 241 (261)
T ss_pred ccccCCceEEEeCCHH
Confidence 368999999863
|
|
| >CHL00131 ycf16 sulfate ABC transporter protein; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-35 Score=325.64 Aligned_cols=221 Identities=24% Similarity=0.294 Sum_probs=176.5
Q ss_pred eeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccC
Q 000979 603 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 682 (1202)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 682 (1202)
.++++|+++.|+ ++.+|+||||++++||+++|+||||||||||+++|+|.....+.+|+|.++|.+.
T Consensus 7 ~l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~~~ 73 (252)
T CHL00131 7 ILEIKNLHASVN-------------ENEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESI 73 (252)
T ss_pred eEEEEeEEEEeC-------------CEEeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCEEc
Confidence 488999998873 2358999999999999999999999999999999999731125689999999876
Q ss_pred Ccc---cccc-eEEEeecCCCCCCCCCHHHHHHHHHHccCC----CCCCHHHHHHHHHHHHHHcCCC-ccccccccCCCC
Q 000979 683 KQE---TFAR-ISGYCEQNDIHSPFVTIYESLLFSAWLRLS----PEVDSETRKMFIDEVMELVELN-PLRQSLVGLPGV 753 (1202)
Q Consensus 683 ~~~---~~~~-~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~----~~~~~~~~~~~~~~~l~~l~l~-~~~~~~~~~~~~ 753 (1202)
... ..++ .++|++|++.+++.+|+.|++.+....... ......+..++++++++.+++. +..++..+
T Consensus 74 ~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~---- 149 (252)
T CHL00131 74 LDLEPEERAHLGIFLAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPSFLSRNVN---- 149 (252)
T ss_pred ccCChhhhheeeEEEEeccccccccccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCchhhhccccc----
Confidence 431 2222 478999999999999999999875432110 1111222345678889999986 34444321
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHh-cceEEEEecC
Q 000979 754 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEA-FDELFLMKRG 832 (1202)
Q Consensus 754 ~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~-~d~v~~l~~g 832 (1202)
..||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||+++ .+... +|++++|+ +
T Consensus 150 ~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~~tH~~~-~~~~~~~d~i~~l~-~ 227 (252)
T CHL00131 150 EGFSGGEKKRNEILQMALLDSELAILDETDSGLDIDALKIIAEGINKLMTSENSIILITHYQR-LLDYIKPDYVHVMQ-N 227 (252)
T ss_pred cCCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHhhhCCEEEEEe-C
Confidence 249999999999999999999999999999999999999999999999877999999999986 34455 89999998 5
Q ss_pred CEEEEEcCCC
Q 000979 833 GQEIYVGPLG 842 (1202)
Q Consensus 833 G~~~~~G~~~ 842 (1202)
|++++.|+++
T Consensus 228 G~i~~~~~~~ 237 (252)
T CHL00131 228 GKIIKTGDAE 237 (252)
T ss_pred CEEEEecChh
Confidence 8999999874
|
|
| >COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-35 Score=342.83 Aligned_cols=224 Identities=22% Similarity=0.293 Sum_probs=187.5
Q ss_pred eeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCc--eEEEEEEEcCc
Q 000979 603 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG--YITGNITISGY 680 (1202)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~--~~~G~i~~~g~ 680 (1202)
-++++|++..|... .+...+++||||++.+||++||+|.|||||||+.++|.|..+.+ ..+|+|.++|.
T Consensus 5 lL~V~nL~v~~~~~---------~~~~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~ 75 (539)
T COG1123 5 LLEVENLTVEFATD---------GGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGR 75 (539)
T ss_pred eEEEeceEEEEecC---------CcceeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCc
Confidence 47899999888642 23357999999999999999999999999999999999976543 35799999998
Q ss_pred cCCc-------ccccceEEEeecCC--CCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCC
Q 000979 681 PKKQ-------ETFARISGYCEQND--IHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLP 751 (1202)
Q Consensus 681 ~~~~-------~~~~~~~~~v~q~~--~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~ 751 (1202)
++.. ....+.++|++|++ .+.|.+||.+.+.-...++.. .+.++.++++.++++.+||.+.... ..
T Consensus 76 dl~~l~~~~~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~~--~~~~ea~~~a~elL~~Vgl~~~~~~---~~ 150 (539)
T COG1123 76 DLLGLSEREMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGK--GSRAEARKRAVELLEQVGLPDPERR---DR 150 (539)
T ss_pred chhcCCHHHHHHhccccEEEEecCchhhcCchhhHHHHHHHHHHHhcc--ccHHHHHHHHHHHHHHcCCCChhhh---cc
Confidence 6432 11346799999997 456778999888766555432 2366777888999999999887655 22
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCCHHHHHhcceEEEEe
Q 000979 752 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMK 830 (1202)
Q Consensus 752 ~~~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~v~~l~ 830 (1202)
.+++|||||||||.||+||+.+|++|++||||++||+.++.+|+++|+++.+ .|.++|++|||+. -+.+++||+++|.
T Consensus 151 yPheLSGG~rQRv~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e~g~a~l~ITHDl~-Vva~~aDrv~Vm~ 229 (539)
T COG1123 151 YPHQLSGGMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLG-VVAELADRVVVMY 229 (539)
T ss_pred CCcccCchHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHHHcCcEEEEEcCCHH-HHHHhcCeEEEEE
Confidence 3578999999999999999999999999999999999999999999999975 4999999999997 4789999999998
Q ss_pred cCCEEEEEcCCC
Q 000979 831 RGGQEIYVGPLG 842 (1202)
Q Consensus 831 ~gG~~~~~G~~~ 842 (1202)
+ |+++..|+++
T Consensus 230 ~-G~iVE~G~~~ 240 (539)
T COG1123 230 K-GEIVETGPTE 240 (539)
T ss_pred C-CEEEEecCHH
Confidence 5 8999999974
|
|
| >PRK11176 lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-36 Score=370.93 Aligned_cols=215 Identities=23% Similarity=0.336 Sum_probs=179.2
Q ss_pred CceeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCc
Q 000979 601 PHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGY 680 (1202)
Q Consensus 601 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~ 680 (1202)
+..++++||+|+|+. +++.+|+|+|+++++||.+||+||||||||||+++|+|..+ +.+|+|.+||.
T Consensus 339 ~~~i~~~~vsf~y~~-----------~~~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~--p~~G~I~i~g~ 405 (582)
T PRK11176 339 KGDIEFRNVTFTYPG-----------KEVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYD--IDEGEILLDGH 405 (582)
T ss_pred CCeEEEEEEEEecCC-----------CCCccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccC--CCCceEEECCE
Confidence 346999999999852 22458999999999999999999999999999999999877 45899999998
Q ss_pred cCCc---ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCC-------CccccccccC
Q 000979 681 PKKQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVEL-------NPLRQSLVGL 750 (1202)
Q Consensus 681 ~~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l-------~~~~~~~~~~ 750 (1202)
+.++ ..+++.++||+|++.+++ .|++||+.++. +...++++ ++++++.+++ .+-.|+.+|.
T Consensus 406 ~i~~~~~~~~~~~i~~v~Q~~~lf~-~Ti~~Ni~~~~----~~~~~~~~----i~~al~~~~l~~~i~~lp~Gldt~ig~ 476 (582)
T PRK11176 406 DLRDYTLASLRNQVALVSQNVHLFN-DTIANNIAYAR----TEQYSREQ----IEEAARMAYAMDFINKMDNGLDTVIGE 476 (582)
T ss_pred EhhhcCHHHHHhhceEEccCceeec-chHHHHHhcCC----CCCCCHHH----HHHHHHHhCcHHHHHhcccccCceeCC
Confidence 8654 456788999999999886 79999998742 11233332 4555555553 3445777876
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEe
Q 000979 751 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 830 (1202)
Q Consensus 751 ~~~~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~ 830 (1202)
.+ +.||||||||++|||||+++|+||+||||||+||+.++..+.+.|+++. +++|+|++||+++ ..+.||+|++|+
T Consensus 477 ~g-~~LSGGqrQRi~LARall~~~~ililDEptsaLD~~t~~~i~~~l~~~~-~~~tvI~VtHr~~--~~~~~D~Ii~l~ 552 (582)
T PRK11176 477 NG-VLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQ-KNRTSLVIAHRLS--TIEKADEILVVE 552 (582)
T ss_pred CC-CcCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHh-CCCEEEEEecchH--HHHhCCEEEEEE
Confidence 54 5699999999999999999999999999999999999999999999874 5799999999985 578899999998
Q ss_pred cCCEEEEEcCCC
Q 000979 831 RGGQEIYVGPLG 842 (1202)
Q Consensus 831 ~gG~~~~~G~~~ 842 (1202)
+ |+++..|+.+
T Consensus 553 ~-g~i~e~g~~~ 563 (582)
T PRK11176 553 D-GEIVERGTHA 563 (582)
T ss_pred C-CEEEEeCCHH
Confidence 5 8999999863
|
|
| >TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-35 Score=374.16 Aligned_cols=214 Identities=28% Similarity=0.423 Sum_probs=177.2
Q ss_pred CceeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCc
Q 000979 601 PHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGY 680 (1202)
Q Consensus 601 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~ 680 (1202)
...++++||+|+|+. +++.+|+|+|+++++||.+||+||||||||||+|+|+|..+ +.+|+|.+||.
T Consensus 453 ~~~i~~~~vsf~y~~-----------~~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~--p~~G~I~idg~ 519 (694)
T TIGR01846 453 RGAITFENIRFRYAP-----------DSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYT--PQHGQVLVDGV 519 (694)
T ss_pred CCeEEEEEEEEEcCC-----------CCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECCE
Confidence 457999999999952 22458999999999999999999999999999999999876 45899999999
Q ss_pred cCCc---ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCC-------ccccccccC
Q 000979 681 PKKQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELN-------PLRQSLVGL 750 (1202)
Q Consensus 681 ~~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-------~~~~~~~~~ 750 (1202)
++++ ..+|+.++||+|++.+++ .|++||+.++. ++.+.++ +.++++..++. +-.|+.++.
T Consensus 520 ~i~~~~~~~~r~~i~~v~q~~~lf~-~ti~eNi~~~~-----~~~~~~~----i~~a~~~~~l~~~i~~lp~gl~t~i~~ 589 (694)
T TIGR01846 520 DLAIADPAWLRRQMGVVLQENVLFS-RSIRDNIALCN-----PGAPFEH----VIHAAKLAGAHDFISELPQGYNTEVGE 589 (694)
T ss_pred ehhhCCHHHHHHhCeEEccCCeehh-hhHHHHHhcCC-----CCCCHHH----HHHHHHHcChHHHHHhCcCccCcEecC
Confidence 8654 456788999999988886 69999998642 1233322 34445554443 335677766
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEe
Q 000979 751 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 830 (1202)
Q Consensus 751 ~~~~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~ 830 (1202)
.+ ..||||||||++|||||+++|++|+||||||+||+.+++.+.+.|+++. +++|+|++||+++ ..+.+|++++|+
T Consensus 590 ~g-~~LSgGq~qri~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~~~--~~~~~d~ii~l~ 665 (694)
T TIGR01846 590 KG-ANLSGGQRQRIAIARALVGNPRILIFDEATSALDYESEALIMRNMREIC-RGRTVIIIAHRLS--TVRACDRIIVLE 665 (694)
T ss_pred CC-CCCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHh-CCCEEEEEeCChH--HHHhCCEEEEEe
Confidence 54 5799999999999999999999999999999999999999999999874 6899999999985 456799999998
Q ss_pred cCCEEEEEcCCC
Q 000979 831 RGGQEIYVGPLG 842 (1202)
Q Consensus 831 ~gG~~~~~G~~~ 842 (1202)
+ |+++..|+.+
T Consensus 666 ~-G~i~~~g~~~ 676 (694)
T TIGR01846 666 K-GQIAESGRHE 676 (694)
T ss_pred C-CEEEEeCCHH
Confidence 5 8999999863
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >PRK14243 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-35 Score=329.27 Aligned_cols=218 Identities=19% Similarity=0.242 Sum_probs=173.6
Q ss_pred eeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCC--c-eEEEEEEEcC
Q 000979 603 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG--G-YITGNITISG 679 (1202)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~--~-~~~G~i~~~g 679 (1202)
.++++||+++|. ++.+|+|+|+++++||+++|+||||||||||+++|+|...+ . +.+|+|.++|
T Consensus 10 ~l~i~~v~~~~~-------------~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g 76 (264)
T PRK14243 10 VLRTENLNVYYG-------------SFLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHG 76 (264)
T ss_pred EEEEeeeEEEEC-------------CEEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECC
Confidence 478999999873 23589999999999999999999999999999999997431 1 2579999999
Q ss_pred ccCCc-----ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCC
Q 000979 680 YPKKQ-----ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVS 754 (1202)
Q Consensus 680 ~~~~~-----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~ 754 (1202)
.++.. ...++.++|++|++.+++ .|+.||+.+....+. .. .+.++.++++++.+++.+..+.... ..+.
T Consensus 77 ~~i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~---~~-~~~~~~~~~~l~~~~l~~~l~~~~~-~~~~ 150 (264)
T PRK14243 77 KNLYAPDVDPVEVRRRIGMVFQKPNPFP-KSIYDNIAYGARING---YK-GDMDELVERSLRQAALWDEVKDKLK-QSGL 150 (264)
T ss_pred EEccccccChHHHhhhEEEEccCCcccc-ccHHHHHHhhhhhcC---cc-hHHHHHHHHHHHHhCchhhHHHHhc-CCcc
Confidence 87531 234567999999988887 599999988654321 11 1223446677777777431111111 1245
Q ss_pred CCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEec---
Q 000979 755 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKR--- 831 (1202)
Q Consensus 755 ~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~--- 831 (1202)
.||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||++||+++ ++.+.|||+++|++
T Consensus 151 ~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tvi~vtH~~~-~~~~~~d~v~~l~~~~~ 228 (264)
T PRK14243 151 SLSGGQQQRLCIARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKE-QYTIIIVTHNMQ-QAARVSDMTAFFNVELT 228 (264)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEecCHH-HHHHhCCEEEEEecccc
Confidence 7999999999999999999999999999999999999999999999865 589999999986 68899999999972
Q ss_pred -----CCEEEEEcCC
Q 000979 832 -----GGQEIYVGPL 841 (1202)
Q Consensus 832 -----gG~~~~~G~~ 841 (1202)
.|+++..|++
T Consensus 229 ~~~~~~g~i~~~~~~ 243 (264)
T PRK14243 229 EGGGRYGYLVEFDRT 243 (264)
T ss_pred cccccCceEEEeCCH
Confidence 4899999986
|
|
| >PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-36 Score=371.83 Aligned_cols=212 Identities=22% Similarity=0.347 Sum_probs=179.1
Q ss_pred CceeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCc
Q 000979 601 PHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGY 680 (1202)
Q Consensus 601 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~ 680 (1202)
...++++|++|+|+. ++.+|+|+|+++++||.+||+|+||||||||+++|+|..+ +.+|+|.+||.
T Consensus 338 ~~~i~~~~v~f~y~~------------~~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~--p~~G~I~idg~ 403 (592)
T PRK10790 338 SGRIDIDNVSFAYRD------------DNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYP--LTEGEIRLDGR 403 (592)
T ss_pred CCeEEEEEEEEEeCC------------CCceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccC--CCCceEEECCE
Confidence 356999999999951 1348999999999999999999999999999999999877 45899999998
Q ss_pred cCCc---ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCc-------cccccccC
Q 000979 681 PKKQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP-------LRQSLVGL 750 (1202)
Q Consensus 681 ~~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~-------~~~~~~~~ 750 (1202)
++++ ..+++.++||+|++.+++. |++||+.++. ..+++ .++++++.+|+.+ -.|+.+|.
T Consensus 404 ~i~~~~~~~l~~~i~~v~Q~~~lF~~-Ti~~NI~~~~------~~~d~----~i~~a~~~~gl~~~i~~lp~Gldt~i~e 472 (592)
T PRK10790 404 PLSSLSHSVLRQGVAMVQQDPVVLAD-TFLANVTLGR------DISEE----QVWQALETVQLAELARSLPDGLYTPLGE 472 (592)
T ss_pred EhhhCCHHHHHhheEEEccCCccccc-hHHHHHHhCC------CCCHH----HHHHHHHHcCcHHHHHhccccccccccC
Confidence 8653 4578899999999999884 9999998852 12222 3566777776543 34666766
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEe
Q 000979 751 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 830 (1202)
Q Consensus 751 ~~~~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~ 830 (1202)
.+ ..||||||||++|||||+++|+||+||||||+||+.+++.+.+.|+++.+ ++|+|++||+++ ....+|++++|+
T Consensus 473 ~g-~~LSGGqrQRialARaLl~~~~illlDEpts~LD~~t~~~i~~~l~~~~~-~~tvIivtHr~~--~l~~~D~ii~l~ 548 (592)
T PRK10790 473 QG-NNLSVGQKQLLALARVLVQTPQILILDEATANIDSGTEQAIQQALAAVRE-HTTLVVIAHRLS--TIVEADTILVLH 548 (592)
T ss_pred CC-CCCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhC-CCEEEEEecchH--HHHhCCEEEEEE
Confidence 44 46999999999999999999999999999999999999999999998754 699999999984 577899999998
Q ss_pred cCCEEEEEcCCC
Q 000979 831 RGGQEIYVGPLG 842 (1202)
Q Consensus 831 ~gG~~~~~G~~~ 842 (1202)
+|+++..|+.+
T Consensus 549 -~G~i~~~G~~~ 559 (592)
T PRK10790 549 -RGQAVEQGTHQ 559 (592)
T ss_pred -CCEEEEEcCHH
Confidence 58999999864
|
|
| >PRK14238 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-35 Score=329.38 Aligned_cols=215 Identities=21% Similarity=0.216 Sum_probs=173.5
Q ss_pred eeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCC--C-ceEEEEEEEcC
Q 000979 603 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKT--G-GYITGNITISG 679 (1202)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~--~-~~~~G~i~~~g 679 (1202)
.++++|+++.|+ ++.+|+|+||++++||+++|+|+||||||||+++|+|..+ + .+.+|+|.++|
T Consensus 24 ~l~~~~l~~~~~-------------~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g 90 (271)
T PRK14238 24 VFDTQNLNLWYG-------------EDHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRD 90 (271)
T ss_pred EEEEeeeEEEEC-------------CcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECC
Confidence 589999999884 1348999999999999999999999999999999999754 1 13689999999
Q ss_pred ccCCc-----ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCC----ccccccccC
Q 000979 680 YPKKQ-----ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELN----PLRQSLVGL 750 (1202)
Q Consensus 680 ~~~~~-----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~----~~~~~~~~~ 750 (1202)
.++.. ...++.++|++|++.+++ .|++||+.+....+. ..+.+..++.+.+.++.+++. +..+..
T Consensus 91 ~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~--- 164 (271)
T PRK14238 91 QNIFDKSYSVEELRTNVGMVFQKPNPFP-KSIYDNVTYGPKIHG--IKDKKTLDEIVEKSLRGAAIWDELKDRLHDN--- 164 (271)
T ss_pred EEcccccccHHHHhhhEEEEecCCcccc-ccHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHHcCCcchHHHHHhcC---
Confidence 87631 234567999999998887 599999998654321 111222234456777776543 222322
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEe
Q 000979 751 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 830 (1202)
Q Consensus 751 ~~~~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~ 830 (1202)
...||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||+++|+++ .+.+.+|++++|+
T Consensus 165 --~~~LSgGe~qrv~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivsH~~~-~i~~~~d~i~~l~ 240 (271)
T PRK14238 165 --AYGLSGGQQQRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKK-DYSIIIVTHNMQ-QAARISDKTAFFL 240 (271)
T ss_pred --cccCCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHc-CCEEEEEEcCHH-HHHHhCCEEEEEE
Confidence 457999999999999999999999999999999999999999999999865 799999999986 5778899999998
Q ss_pred cCCEEEEEcCC
Q 000979 831 RGGQEIYVGPL 841 (1202)
Q Consensus 831 ~gG~~~~~G~~ 841 (1202)
+ |+++..|++
T Consensus 241 ~-G~i~~~g~~ 250 (271)
T PRK14238 241 N-GYVNEYDDT 250 (271)
T ss_pred C-CEEEEeCCH
Confidence 5 899999986
|
|
| >PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-35 Score=359.77 Aligned_cols=217 Identities=27% Similarity=0.329 Sum_probs=181.5
Q ss_pred eeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccC
Q 000979 603 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 682 (1202)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 682 (1202)
.++++|+++.|+ ++.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++
T Consensus 4 ~l~~~~l~~~~~-------------~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--p~~G~I~~~g~~i 68 (501)
T PRK11288 4 YLSFDGIGKTFP-------------GVKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQ--PDAGSILIDGQEM 68 (501)
T ss_pred eEEEeeeEEEEC-------------CEEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCCEEEECCEEC
Confidence 478899998873 2458999999999999999999999999999999999876 4589999999876
Q ss_pred Cc----ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCH
Q 000979 683 KQ----ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLST 758 (1202)
Q Consensus 683 ~~----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSg 758 (1202)
.. ..+++.++|++|++.+++.+||+||+.++............+.+++++++++.+++.+..++. +..|||
T Consensus 69 ~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSg 143 (501)
T PRK11288 69 RFASTTAALAAGVAIIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDIDPDTP-----LKYLSI 143 (501)
T ss_pred CCCCHHHHHhCCEEEEEechhccCCCCHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCCCcCCc-----hhhCCH
Confidence 42 123567999999999999999999998853211111122334455688999999998666654 357999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCCEEEEE
Q 000979 759 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYV 838 (1202)
Q Consensus 759 GqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~ 838 (1202)
|||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||+++ ++.+.||++++|++ |+++..
T Consensus 144 Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiiitHd~~-~~~~~~d~i~~l~~-G~i~~~ 221 (501)
T PRK11288 144 GQRQMVEIAKALARNARVIAFDEPTSSLSAREIEQLFRVIRELRAEGRVILYVSHRME-EIFALCDAITVFKD-GRYVAT 221 (501)
T ss_pred HHHHHHHHHHHHHhCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEee
Confidence 9999999999999999999999999999999999999999999878999999999986 57788999999985 798877
Q ss_pred cCC
Q 000979 839 GPL 841 (1202)
Q Consensus 839 G~~ 841 (1202)
++.
T Consensus 222 ~~~ 224 (501)
T PRK11288 222 FDD 224 (501)
T ss_pred cCc
Confidence 764
|
|
| >KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-37 Score=335.19 Aligned_cols=220 Identities=25% Similarity=0.373 Sum_probs=183.2
Q ss_pred cCCCCceeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEE
Q 000979 597 LPFEPHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIT 676 (1202)
Q Consensus 597 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~ 676 (1202)
.....+.++|+||+|.|+ .++++|+||||++.||+.+||+||||+||||++++|....+ ..+|.|.
T Consensus 531 l~~~~G~i~fsnvtF~Y~------------p~k~vl~disF~v~pGktvAlVG~SGaGKSTimRlLfRffd--v~sGsI~ 596 (790)
T KOG0056|consen 531 LKVTQGKIEFSNVTFAYD------------PGKPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFD--VNSGSIT 596 (790)
T ss_pred ccccCCeEEEEEeEEecC------------CCCceeecceEEecCCcEEEEECCCCCchhHHHHHHHHHhh--ccCceEE
Confidence 344678899999999996 35678999999999999999999999999999999976543 5689999
Q ss_pred EcCccCCc---ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHH--HHH-HHHcCCCccccccccC
Q 000979 677 ISGYPKKQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFI--DEV-MELVELNPLRQSLVGL 750 (1202)
Q Consensus 677 ~~g~~~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~--~~~-l~~l~l~~~~~~~~~~ 750 (1202)
+||++++. ...|+.+|.||||..+|. -|+..|++|+. +..++++..+.. ..+ -+.++..+..++.+|.
T Consensus 597 iDgqdIrnvt~~SLRs~IGVVPQDtvLFN-dTI~yNIryak-----~~AsneevyaAAkAA~IHdrIl~fPegY~t~VGE 670 (790)
T KOG0056|consen 597 IDGQDIRNVTQSSLRSSIGVVPQDTVLFN-DTILYNIRYAK-----PSASNEEVYAAAKAAQIHDRILQFPEGYNTRVGE 670 (790)
T ss_pred EcCchHHHHHHHHHHHhcCcccCcceeec-ceeeeheeecC-----CCCChHHHHHHHHHhhHHHHHhcCchhhhhhhhh
Confidence 99998754 567899999999988875 68888888862 223333322211 111 2346788888999998
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEe
Q 000979 751 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 830 (1202)
Q Consensus 751 ~~~~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~ 830 (1202)
.|.+ |||||||||+|||+++++|.+++|||+||+||..+++.++..|.++++ ++|.|++.|.+|. .-.+|.+++++
T Consensus 671 RGLk-LSGGEKQRVAiARtiLK~P~iIlLDEATSALDT~tER~IQaaL~rlca-~RTtIVvAHRLST--ivnAD~ILvi~ 746 (790)
T KOG0056|consen 671 RGLK-LSGGEKQRVAIARTILKAPSIILLDEATSALDTNTERAIQAALARLCA-NRTTIVVAHRLST--IVNADLILVIS 746 (790)
T ss_pred cccc-cCCcchhhHHHHHHHhcCCcEEEEcchhhhcCCccHHHHHHHHHHHhc-CCceEEEeeeehh--eecccEEEEEe
Confidence 8775 999999999999999999999999999999999999999999999874 8999999999873 45689999998
Q ss_pred cCCEEEEEcCC
Q 000979 831 RGGQEIYVGPL 841 (1202)
Q Consensus 831 ~gG~~~~~G~~ 841 (1202)
+ |+++..|.-
T Consensus 747 ~-G~IvErG~H 756 (790)
T KOG0056|consen 747 N-GRIVERGRH 756 (790)
T ss_pred C-CeEeecCcH
Confidence 5 899999974
|
|
| >PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-35 Score=359.50 Aligned_cols=206 Identities=25% Similarity=0.333 Sum_probs=174.1
Q ss_pred eEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCCc----ccccceEEEeecCCCCCCCC
Q 000979 629 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ----ETFARISGYCEQNDIHSPFV 704 (1202)
Q Consensus 629 ~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~----~~~~~~~~~v~q~~~~~~~l 704 (1202)
+++|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.. ...++.++|++|++.+++.+
T Consensus 11 ~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 88 (491)
T PRK10982 11 VKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQ--KDSGSILFQGKEIDFKSSKEALENGISMVHQELNLVLQR 88 (491)
T ss_pred EEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCC--CCceEEEECCEECCCCCHHHHHhCCEEEEecccccccCC
Confidence 468999999999999999999999999999999999876 458999999987642 12346789999999888999
Q ss_pred CHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCC
Q 000979 705 TIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTS 784 (1202)
Q Consensus 705 Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~illlDEPts 784 (1202)
||+||+.+..........+.++.+++++++++.+++.+..++.+ ..|||||||||+|||||+.+|++|+|||||+
T Consensus 89 tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgGq~qrv~lA~al~~~p~lllLDEPt~ 163 (491)
T PRK10982 89 SVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDIDPRAKV-----ATLSVSQMQMIEIAKAFSYNAKIVIMDEPTS 163 (491)
T ss_pred CHHHHhhcccccccccccCHHHHHHHHHHHHHHcCCCCCccCch-----hhCCHHHHHHHHHHHHHHhCCCEEEEeCCCC
Confidence 99999987532111101123333456889999999987766653 5799999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCCEEEEEcCCCc
Q 000979 785 GLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLGR 843 (1202)
Q Consensus 785 gLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G~~~~ 843 (1202)
|||+.++..+.+.|++++++|+|||++||+++ ++.+.||++++|++ |+++..|++.+
T Consensus 164 ~LD~~~~~~l~~~l~~l~~~g~tvii~tH~~~-~~~~~~d~i~~l~~-G~i~~~~~~~~ 220 (491)
T PRK10982 164 SLTEKEVNHLFTIIRKLKERGCGIVYISHKME-EIFQLCDEITILRD-GQWIATQPLAG 220 (491)
T ss_pred CCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCEEEEEEC-CEEEeecChhh
Confidence 99999999999999999878999999999986 57789999999985 89999998765
|
|
| >PRK14246 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-35 Score=324.74 Aligned_cols=217 Identities=22% Similarity=0.301 Sum_probs=175.4
Q ss_pred eeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCC--ce--EEEEEEEc
Q 000979 603 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG--GY--ITGNITIS 678 (1202)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~--~~--~~G~i~~~ 678 (1202)
.+.++|+++++. ++.+|+|+||++++||+++|+||||||||||+++|+|...+ |. +.|++.++
T Consensus 10 ~i~~~~~~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~ 76 (257)
T PRK14246 10 VFNISRLYLYIN-------------DKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYF 76 (257)
T ss_pred heeeeeEEEecC-------------CceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEEC
Confidence 378899998873 34689999999999999999999999999999999997652 21 23666666
Q ss_pred CccCCc---ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCc----cccccccCC
Q 000979 679 GYPKKQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP----LRQSLVGLP 751 (1202)
Q Consensus 679 g~~~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~----~~~~~~~~~ 751 (1202)
|.+... ...++.++|++|++.+++.+|++||+.+...... ....++.++.++++++.+++.+ ..+..
T Consensus 77 g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~---- 150 (257)
T PRK14246 77 GKDIFQIDAIKLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHG--IKEKREIKKIVEECLRKVGLWKEVYDRLNSP---- 150 (257)
T ss_pred CcccccCCHHHHhcceEEEccCCccCCCCcHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHcCCCccchhhhcCC----
Confidence 665422 2346679999999999999999999998753221 1123334456788999999863 22332
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEec
Q 000979 752 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKR 831 (1202)
Q Consensus 752 ~~~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~ 831 (1202)
++.||||||||++|||||+.+|++++|||||+|||+.++..+.+.|+++++ ++|||++||+++ .+.+.||++++|++
T Consensus 151 -~~~LS~G~~qrl~laral~~~P~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiilvsh~~~-~~~~~~d~v~~l~~ 227 (257)
T PRK14246 151 -ASQLSGGQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKN-EIAIVIVSHNPQ-QVARVADYVAFLYN 227 (257)
T ss_pred -cccCCHHHHHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CcEEEEEECCHH-HHHHhCCEEEEEEC
Confidence 357999999999999999999999999999999999999999999999864 699999999986 56789999999984
Q ss_pred CCEEEEEcCCC
Q 000979 832 GGQEIYVGPLG 842 (1202)
Q Consensus 832 gG~~~~~G~~~ 842 (1202)
|+++..|+.+
T Consensus 228 -g~i~~~g~~~ 237 (257)
T PRK14246 228 -GELVEWGSSN 237 (257)
T ss_pred -CEEEEECCHH
Confidence 8999999863
|
|
| >TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-35 Score=326.18 Aligned_cols=215 Identities=26% Similarity=0.283 Sum_probs=173.6
Q ss_pred eeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCcc-
Q 000979 603 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP- 681 (1202)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~- 681 (1202)
.++++|+++.|+ ++.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+
T Consensus 3 ~l~~~~l~~~~~-------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~ 67 (253)
T TIGR02323 3 LLQVSGLSKSYG-------------GGKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLA--PDHGTATYIMRSG 67 (253)
T ss_pred eEEEeeeEEEeC-------------CceEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEEecccc
Confidence 378899999874 1357999999999999999999999999999999999876 458999999876
Q ss_pred ----CCc---c----cccceEEEeecCCC--CCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCc-ccccc
Q 000979 682 ----KKQ---E----TFARISGYCEQNDI--HSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP-LRQSL 747 (1202)
Q Consensus 682 ----~~~---~----~~~~~~~~v~q~~~--~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~-~~~~~ 747 (1202)
+.. . ..++.++|++|++. +.+.+|+.||+.+..... . .....+.++.++++++.+++.+ ..++.
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~i~~~~~~~-~-~~~~~~~~~~~~~~l~~l~l~~~~~~~~ 145 (253)
T TIGR02323 68 AELELYQLSEAERRRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAI-G-ARHYGNIRAAAHDWLEEVEIDPTRIDDL 145 (253)
T ss_pred cccccccCCHHHHHHhhhcceEEEEeCcccccCccccHHHHHHHHHHHh-c-ccchHHHHHHHHHHHHHcCCChhhhhcC
Confidence 321 1 12356899999974 445679999987543211 1 0111223456788999999963 45544
Q ss_pred ccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhcceE
Q 000979 748 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDEL 826 (1202)
Q Consensus 748 ~~~~~~~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v 826 (1202)
++.||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++ |.|+|+++|++. .+.+.+|++
T Consensus 146 -----~~~LSgG~~qrv~laral~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH~~~-~~~~~~d~~ 219 (253)
T TIGR02323 146 -----PRAFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDLG-VARLLAQRL 219 (253)
T ss_pred -----chhcCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEE
Confidence 3579999999999999999999999999999999999999999999998654 899999999986 577789999
Q ss_pred EEEecCCEEEEEcCC
Q 000979 827 FLMKRGGQEIYVGPL 841 (1202)
Q Consensus 827 ~~l~~gG~~~~~G~~ 841 (1202)
++|++ |+++..|++
T Consensus 220 ~~l~~-G~i~~~~~~ 233 (253)
T TIGR02323 220 LVMQQ-GRVVESGLT 233 (253)
T ss_pred EEEEC-CEEEEECCH
Confidence 99985 899999885
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se. |
| >PRK13546 teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-35 Score=322.46 Aligned_cols=220 Identities=20% Similarity=0.259 Sum_probs=178.3
Q ss_pred ceeEEeeeEEEEecCch----hhh---cccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEE
Q 000979 602 HSLTFDEVVYSVDMPEE----MKV---QGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGN 674 (1202)
Q Consensus 602 ~~~~~~~~~~~~~~~~~----~~~---~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~ 674 (1202)
+.+.++||+..|..... .+. ......++.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~--p~~G~ 80 (264)
T PRK13546 3 VSVNIKNVTKEYRIYRTNKERMKDALIPKHKNKTFFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLS--PTVGK 80 (264)
T ss_pred ceEEEeeeEEEEEecccchHHHHHHhhhhccCCceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC--CCceE
Confidence 56888999887765321 111 0112255789999999999999999999999999999999999876 45899
Q ss_pred EEEcCccCCcccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCC
Q 000979 675 ITISGYPKKQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVS 754 (1202)
Q Consensus 675 i~~~g~~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~ 754 (1202)
|.++|. +++++|+..+.+.+|+.||+.+..... ....++....++++++.+++.+..+.. ++
T Consensus 81 I~~~g~----------~~~~~~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~ 142 (264)
T PRK13546 81 VDRNGE----------VSVIAISAGLSGQLTGIENIEFKMLCM---GFKRKEIKAMTPKIIEFSELGEFIYQP-----VK 142 (264)
T ss_pred EEECCE----------EeEEecccCCCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhcCC-----cc
Confidence 999884 346677777778899999998764432 123344445567888888888766654 35
Q ss_pred CCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCCE
Q 000979 755 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQ 834 (1202)
Q Consensus 755 ~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~ 834 (1202)
.||||||||++||+||+.+|++|+|||||+|||+.++..+.+.|+++++.|+|+|++||++. ++.+.+|++++|+ +|+
T Consensus 143 ~LS~Gq~qrv~Laral~~~p~iLlLDEPt~gLD~~~~~~l~~~L~~~~~~g~tiIiisH~~~-~i~~~~d~i~~l~-~G~ 220 (264)
T PRK13546 143 KYSSGMRAKLGFSINITVNPDILVIDEALSVGDQTFAQKCLDKIYEFKEQNKTIFFVSHNLG-QVRQFCTKIAWIE-GGK 220 (264)
T ss_pred cCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHH-HHHHHcCEEEEEE-CCE
Confidence 79999999999999999999999999999999999999999999998777999999999986 5778899999998 489
Q ss_pred EEEEcCCCc
Q 000979 835 EIYVGPLGR 843 (1202)
Q Consensus 835 ~~~~G~~~~ 843 (1202)
++..|++++
T Consensus 221 i~~~g~~~~ 229 (264)
T PRK13546 221 LKDYGELDD 229 (264)
T ss_pred EEEeCCHHH
Confidence 999998643
|
|
| >COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-36 Score=335.47 Aligned_cols=226 Identities=28% Similarity=0.431 Sum_probs=189.8
Q ss_pred CCCCccCCCCceeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceE
Q 000979 592 KKGMVLPFEPHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYI 671 (1202)
Q Consensus 592 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~ 671 (1202)
...+..|.+...+..+++++.- | ..++++|+|+||++.+||.+||+||||||||||.|+|.|.-. +.
T Consensus 323 ~~~m~LP~P~g~L~Ve~l~~~P---P--------g~~~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~--p~ 389 (580)
T COG4618 323 AERMPLPAPQGALSVERLTAAP---P--------GQKKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWP--PT 389 (580)
T ss_pred cCCCCCCCCCceeeEeeeeecC---C--------CCCCcceecceeEecCCceEEEECCCCccHHHHHHHHHcccc--cC
Confidence 3456778888899999999832 2 345689999999999999999999999999999999999765 56
Q ss_pred EEEEEEcCccCCc---ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHH-----HHHHHHHHHHHcCCCcc
Q 000979 672 TGNITISGYPKKQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSET-----RKMFIDEVMELVELNPL 743 (1202)
Q Consensus 672 ~G~i~~~g~~~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~-----~~~~~~~~l~~l~l~~~ 743 (1202)
+|.|.+||.+.++ +.+-+++||.||+-.+|+ -||.||+.= ..++.+.+. +.+.+.|++ +.+.+-
T Consensus 390 ~G~VRLDga~l~qWd~e~lG~hiGYLPQdVeLF~-GTIaeNIaR-----f~~~~d~~kIieAA~lAgvHelI--l~lP~G 461 (580)
T COG4618 390 SGSVRLDGADLRQWDREQLGRHIGYLPQDVELFD-GTIAENIAR-----FGEEADPEKVIEAARLAGVHELI--LRLPQG 461 (580)
T ss_pred CCcEEecchhhhcCCHHHhccccCcCcccceecC-CcHHHHHHh-----ccccCCHHHHHHHHHHcChHHHH--HhCcCC
Confidence 8999999998764 456789999999988887 799999952 222333221 222334443 456778
Q ss_pred ccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhc
Q 000979 744 RQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAF 823 (1202)
Q Consensus 744 ~~~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~ 823 (1202)
.||.+|..| ..||||||||+++||||-.||.+++||||-|+||.+.+..+.+.|.+++++|.|+|+++|.|+ +...+
T Consensus 462 YdT~iG~~G-~~LSgGQRQRIaLARAlYG~P~lvVLDEPNsNLD~~GE~AL~~Ai~~~k~rG~~vvviaHRPs--~L~~~ 538 (580)
T COG4618 462 YDTRIGEGG-ATLSGGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKARGGTVVVIAHRPS--ALASV 538 (580)
T ss_pred ccCccCCCC-CCCCchHHHHHHHHHHHcCCCcEEEecCCCCCcchhHHHHHHHHHHHHHHcCCEEEEEecCHH--HHhhc
Confidence 899999765 579999999999999999999999999999999999999999999999999999999999986 78899
Q ss_pred ceEEEEecCCEEEEEcCCC
Q 000979 824 DELFLMKRGGQEIYVGPLG 842 (1202)
Q Consensus 824 d~v~~l~~gG~~~~~G~~~ 842 (1202)
|++++|+ +|++-.+|+.+
T Consensus 539 Dkilvl~-~G~~~~FG~r~ 556 (580)
T COG4618 539 DKILVLQ-DGRIAAFGPRE 556 (580)
T ss_pred ceeeeec-CChHHhcCCHH
Confidence 9999998 58999999974
|
|
| >cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-35 Score=307.05 Aligned_cols=170 Identities=27% Similarity=0.420 Sum_probs=150.2
Q ss_pred eEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCC
Q 000979 604 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 683 (1202)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 683 (1202)
++++|+++.++ .+.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+..
T Consensus 1 l~~~~l~~~~~-------------~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~--~~~G~i~~~g~~~~ 65 (173)
T cd03230 1 IEVRNLSKRYG-------------KKTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLK--PDSGEIKVLGKDIK 65 (173)
T ss_pred CEEEEEEEEEC-------------CeeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEECCEEcc
Confidence 35788888773 1358999999999999999999999999999999999876 45899999998754
Q ss_pred c--ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHH
Q 000979 684 Q--ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQR 761 (1202)
Q Consensus 684 ~--~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqr 761 (1202)
. ...++.++|++|++.+++.+|+.||+. ||||||
T Consensus 66 ~~~~~~~~~i~~~~q~~~~~~~~tv~~~~~--------------------------------------------LS~G~~ 101 (173)
T cd03230 66 KEPEEVKRRIGYLPEEPSLYENLTVRENLK--------------------------------------------LSGGMK 101 (173)
T ss_pred cchHhhhccEEEEecCCccccCCcHHHHhh--------------------------------------------cCHHHH
Confidence 3 234567999999999888899999863 899999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCCE
Q 000979 762 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQ 834 (1202)
Q Consensus 762 qRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~ 834 (1202)
||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++|.|+|++||+++ ++.+.+|++++|++ |+
T Consensus 102 qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~-~~~~~~d~i~~l~~-g~ 172 (173)
T cd03230 102 QRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILE-EAERLCDRVAILNN-GR 172 (173)
T ss_pred HHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHH-HHHHhCCEEEEEeC-CC
Confidence 9999999999999999999999999999999999999999877899999999986 57778999999985 54
|
In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-36 Score=328.82 Aligned_cols=210 Identities=25% Similarity=0.337 Sum_probs=165.7
Q ss_pred eEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCC
Q 000979 604 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 683 (1202)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 683 (1202)
++++|+++.++. .++.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+..
T Consensus 1 i~~~~l~~~~~~-----------~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~ 67 (234)
T cd03251 1 VEFKNVTFRYPG-----------DGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYD--VDSGRILIDGHDVR 67 (234)
T ss_pred CEEEEEEEEeCC-----------CCccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcccc--CCCCEEEECCEEhh
Confidence 357888888741 11358999999999999999999999999999999999876 45899999998653
Q ss_pred c---ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHH-----HHHHHHHHHc--CCCccccccccCCCC
Q 000979 684 Q---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRK-----MFIDEVMELV--ELNPLRQSLVGLPGV 753 (1202)
Q Consensus 684 ~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~-----~~~~~~l~~l--~l~~~~~~~~~~~~~ 753 (1202)
. ...++.++|++|++.+++ .||+||+.+.... ....+.. ..+++.++.+ ++.+..+.. +
T Consensus 68 ~~~~~~~~~~i~~~~q~~~~~~-~tv~enl~~~~~~-----~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~-----~ 136 (234)
T cd03251 68 DYTLASLRRQIGLVSQDVFLFN-DTVAENIAYGRPG-----ATREEVEEAARAANAHEFIMELPEGYDTVIGER-----G 136 (234)
T ss_pred hCCHHHHHhhEEEeCCCCeecc-ccHHHHhhccCCC-----CCHHHHHHHHHHcCcHHHHHhcccCcceeeccC-----C
Confidence 2 234567999999988876 6999999875321 1111111 1234444444 444433332 4
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCC
Q 000979 754 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGG 833 (1202)
Q Consensus 754 ~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG 833 (1202)
..||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++. +|+|||++||+++ ++ +.||++++|++ |
T Consensus 137 ~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~-~~~tii~~sh~~~-~~-~~~d~v~~l~~-G 212 (234)
T cd03251 137 VKLSGGQRQRIAIARALLKDPPILILDEATSALDTESERLVQAALERLM-KNRTTFVIAHRLS-TI-ENADRIVVLED-G 212 (234)
T ss_pred CcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhc-CCCEEEEEecCHH-HH-hhCCEEEEecC-C
Confidence 5799999999999999999999999999999999999999999999986 4899999999986 45 45999999985 7
Q ss_pred EEEEEcCC
Q 000979 834 QEIYVGPL 841 (1202)
Q Consensus 834 ~~~~~G~~ 841 (1202)
+++..|++
T Consensus 213 ~i~~~~~~ 220 (234)
T cd03251 213 KIVERGTH 220 (234)
T ss_pred eEeeeCCH
Confidence 99988875
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14266 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-35 Score=324.55 Aligned_cols=220 Identities=21% Similarity=0.268 Sum_probs=176.3
Q ss_pred eeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCC--C-ceEEEEEEEcC
Q 000979 603 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKT--G-GYITGNITISG 679 (1202)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~--~-~~~~G~i~~~g 679 (1202)
.++++||++.|+ ++.+|+|+||++++||+++|+||||||||||+++|+|... + .+.+|+|.++|
T Consensus 3 ~l~~~~v~~~~~-------------~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g 69 (250)
T PRK14266 3 RIEVENLNTYFD-------------DAHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDG 69 (250)
T ss_pred EEEEEeEEEEeC-------------CeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECC
Confidence 367899998873 2458999999999999999999999999999999999643 1 12589999999
Q ss_pred ccCCc-----ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCC
Q 000979 680 YPKKQ-----ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVS 754 (1202)
Q Consensus 680 ~~~~~-----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~ 754 (1202)
.++.. ...++.++|++|++.+++. |+.||+.+...... ..+.+..+++++++++.+++.+....... ....
T Consensus 70 ~~i~~~~~~~~~~~~~i~~~~q~~~~~~~-t~~~nl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~~-~~~~ 145 (250)
T PRK14266 70 VDIYDPAVDVVELRKKVGMVFQKPNPFPK-SIFDNVAYGLRIHG--EDDEDFIEERVEESLKAAALWDEVKDKLD-KSAL 145 (250)
T ss_pred EEcccccccHHHHhhheEEEecCCccCcc-hHHHHHHhHHhhcC--CCCHHHHHHHHHHHHHHcCCchhHHHHHh-CCcc
Confidence 87642 1345679999999988874 99999987643221 11223334567888898887532111111 1245
Q ss_pred CCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCCE
Q 000979 755 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQ 834 (1202)
Q Consensus 755 ~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~ 834 (1202)
.||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++ +++|||++||++. ++.+.+|++++|++ |+
T Consensus 146 ~LS~Gq~qrv~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~-~~~tiii~sh~~~-~~~~~~~~i~~l~~-G~ 222 (250)
T PRK14266 146 GLSGGQQQRLCIARTIAVSPEVILMDEPCSALDPISTTKIEDLIHKLK-EDYTIVIVTHNMQ-QATRVSKYTSFFLN-GE 222 (250)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEECCHH-HHHhhcCEEEEEEC-Ce
Confidence 799999999999999999999999999999999999999999999985 4899999999986 68888999999985 89
Q ss_pred EEEEcCCC
Q 000979 835 EIYVGPLG 842 (1202)
Q Consensus 835 ~~~~G~~~ 842 (1202)
+++.|+++
T Consensus 223 i~~~g~~~ 230 (250)
T PRK14266 223 IIESGLTD 230 (250)
T ss_pred EEEeCCHH
Confidence 99999863
|
|
| >cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-35 Score=322.57 Aligned_cols=210 Identities=26% Similarity=0.395 Sum_probs=168.5
Q ss_pred eeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccC
Q 000979 603 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 682 (1202)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 682 (1202)
.++++|+++.|+. .++.+|+|+||++++||+++|+||||||||||+++|+|..+ +..|+|.++|.+.
T Consensus 2 ~l~~~~l~~~~~~-----------~~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~~ 68 (220)
T cd03245 2 RIEFRNVSFSYPN-----------QEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYK--PTSGSVLLDGTDI 68 (220)
T ss_pred eEEEEEEEEEcCC-----------CCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC--CCCCeEEECCEEh
Confidence 3678899988731 12358999999999999999999999999999999999865 4579999999875
Q ss_pred Cc---ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCcccccccc------CCCC
Q 000979 683 KQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVG------LPGV 753 (1202)
Q Consensus 683 ~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~------~~~~ 753 (1202)
.. ...++.++|++|++.+++ .|+.||+.+... ... ++.++++++.+++.+..+.... ....
T Consensus 69 ~~~~~~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~-----~~~----~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~ 138 (220)
T cd03245 69 RQLDPADLRRNIGYVPQDVTLFY-GTLRDNITLGAP-----LAD----DERILRAAELAGVTDFVNKHPNGLDLQIGERG 138 (220)
T ss_pred HHCCHHHHHhhEEEeCCCCcccc-chHHHHhhcCCC-----CCC----HHHHHHHHHHcCcHHHHHhccccccceecCCC
Confidence 32 224567999999998876 699999976421 111 1235677888888765554321 0123
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCC
Q 000979 754 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGG 833 (1202)
Q Consensus 754 ~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG 833 (1202)
..||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++ +|||++||+++ . .+.+|++++|.+ |
T Consensus 139 ~~LSgG~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~tii~~sH~~~-~-~~~~d~v~~l~~-g 214 (220)
T cd03245 139 RGLSGGQRQAVALARALLNDPPILLLDEPTSAMDMNSEERLKERLRQLLGD-KTLIIITHRPS-L-LDLVDRIIVMDS-G 214 (220)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCC-CEEEEEeCCHH-H-HHhCCEEEEEeC-C
Confidence 579999999999999999999999999999999999999999999998654 89999999986 3 479999999985 7
Q ss_pred EEEEEc
Q 000979 834 QEIYVG 839 (1202)
Q Consensus 834 ~~~~~G 839 (1202)
++++.|
T Consensus 215 ~i~~~~ 220 (220)
T cd03245 215 RIVADG 220 (220)
T ss_pred eEeecC
Confidence 887654
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. |
| >COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-36 Score=298.79 Aligned_cols=217 Identities=25% Similarity=0.381 Sum_probs=186.9
Q ss_pred eEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCC
Q 000979 604 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 683 (1202)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 683 (1202)
++.+||+++| +++.+|+|+|+++++|.+++++|||||||||||.+++.+.. ..+|+|.++|.++.
T Consensus 2 I~i~nv~K~y-------------~~~~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~--~d~G~i~i~g~~~~ 66 (252)
T COG4604 2 ITIENVSKSY-------------GTKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLK--KDSGEITIDGLELT 66 (252)
T ss_pred eeehhhhHhh-------------CCEEeeccceeeecCCceeEEECCCCccHHHHHHHHHHhcc--ccCceEEEeeeecc
Confidence 4566777665 45789999999999999999999999999999999998766 45899999999875
Q ss_pred c---ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHH
Q 000979 684 Q---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQ 760 (1202)
Q Consensus 684 ~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGq 760 (1202)
. ....+.++..-|+......+||+|-+.|+.......... ++.+..+++.++.++|.+..|+.. .+|||||
T Consensus 67 ~~~s~~LAk~lSILkQ~N~i~~rlTV~dLv~FGRfPYSqGRlt-~eD~~~I~~aieyl~L~~l~dryL-----d~LSGGQ 140 (252)
T COG4604 67 STPSKELAKKLSILKQENHINSRLTVRDLVGFGRFPYSQGRLT-KEDRRIINEAIEYLHLEDLSDRYL-----DELSGGQ 140 (252)
T ss_pred cCChHHHHHHHHHHHhhchhhheeEHHHHhhcCCCcccCCCCc-hHHHHHHHHHHHHhcccchHHHhH-----Hhcccch
Confidence 4 345667788899988888999999999974332222233 345667999999999999999874 5799999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhcceEEEEecCCEEEEEc
Q 000979 761 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVG 839 (1202)
Q Consensus 761 rqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G 839 (1202)
|||.-||+.|+.+.+.++||||.++||-.....+++.|++++++ |+||+++.||.+ ..-.+.|+++-|++ |+++..|
T Consensus 141 rQRAfIAMVlaQdTdyvlLDEPLNNLDmkHsv~iMk~Lrrla~el~KtiviVlHDIN-fAS~YsD~IVAlK~-G~vv~~G 218 (252)
T COG4604 141 RQRAFIAMVLAQDTDYVLLDEPLNNLDMKHSVQIMKILRRLADELGKTIVVVLHDIN-FASCYSDHIVALKN-GKVVKQG 218 (252)
T ss_pred hhhhhhheeeeccCcEEEecCcccccchHHHHHHHHHHHHHHHHhCCeEEEEEeccc-HHHhhhhheeeecC-CEEEecC
Confidence 99999999999999999999999999999999999999999876 999999999997 46678899999985 8999999
Q ss_pred CCCc
Q 000979 840 PLGR 843 (1202)
Q Consensus 840 ~~~~ 843 (1202)
++++
T Consensus 219 ~~~e 222 (252)
T COG4604 219 SPDE 222 (252)
T ss_pred CHHH
Confidence 9975
|
|
| >PRK13539 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-35 Score=315.45 Aligned_cols=197 Identities=28% Similarity=0.376 Sum_probs=165.1
Q ss_pred eEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCC
Q 000979 604 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 683 (1202)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 683 (1202)
++++|+++.|+ ++.+|+|+||+|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+..
T Consensus 3 l~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~ 67 (207)
T PRK13539 3 LEGEDLACVRG-------------GRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLP--PAAGTIKLDGGDID 67 (207)
T ss_pred EEEEeEEEEEC-------------CeEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEeCc
Confidence 67899998873 2458999999999999999999999999999999999876 45899999998753
Q ss_pred cccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHH
Q 000979 684 QETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKR 763 (1202)
Q Consensus 684 ~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqR 763 (1202)
....++.++|++|++.+++.+|++||+.+...... .. ++.++++++.+|+.+..+.. .+.||||||||
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~tv~~~l~~~~~~~~---~~----~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qr 135 (207)
T PRK13539 68 DPDVAEACHYLGHRNAMKPALTVAENLEFWAAFLG---GE----ELDIAAALEAVGLAPLAHLP-----FGYLSAGQKRR 135 (207)
T ss_pred chhhHhhcEEecCCCcCCCCCcHHHHHHHHHHhcC---Cc----HHHHHHHHHHcCCHHHHcCC-----hhhcCHHHHHH
Confidence 22256678999999888889999999987653321 11 12368899999998765554 35799999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEe
Q 000979 764 LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 830 (1202)
Q Consensus 764 v~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~ 830 (1202)
++|||||+.+|++|+|||||+|||+.++..+.+.|++++++|+|+|++||++. ++.+ |+++.+.
T Consensus 136 l~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~--~~~~~~~ 199 (207)
T PRK13539 136 VALARLLVSNRPIWILDEPTAALDAAAVALFAELIRAHLAQGGIVIAATHIPL-GLPG--ARELDLG 199 (207)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCch-hhcc--CcEEeec
Confidence 99999999999999999999999999999999999998777999999999986 3443 8887774
|
|
| >COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-35 Score=337.48 Aligned_cols=219 Identities=25% Similarity=0.372 Sum_probs=189.7
Q ss_pred eeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccC
Q 000979 603 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 682 (1202)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 682 (1202)
-++++|++.+++ ..++|+||||++++||++||+|.||||||||+|+|+|... +.+|+|.++|++.
T Consensus 8 ll~~~~i~K~Fg-------------gV~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~--p~~G~I~~~G~~~ 72 (500)
T COG1129 8 LLELRGISKSFG-------------GVKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYP--PDSGEILIDGKPV 72 (500)
T ss_pred eeeeecceEEcC-------------CceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCccc--CCCceEEECCEEc
Confidence 477899998874 4579999999999999999999999999999999999877 5689999999976
Q ss_pred Cc----ccccceEEEeecCCCCCCCCCHHHHHHHHHHccC-CCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCC
Q 000979 683 KQ----ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRL-SPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLS 757 (1202)
Q Consensus 683 ~~----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~-~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LS 757 (1202)
.. ......|+.|.|+..+.|++||.||+.++...+. ..-.+....+++..++++.+++....++.+ ..||
T Consensus 73 ~~~sp~~A~~~GI~~V~QEl~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~~~~~~~v-----~~Ls 147 (500)
T COG1129 73 AFSSPRDALAAGIATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDIDPDTLV-----GDLS 147 (500)
T ss_pred cCCCHHHHHhCCcEEEeechhccCCccHHHHhhcccccccCCCccCHHHHHHHHHHHHHHcCCCCChhhhh-----hhCC
Confidence 43 2234578999999999999999999987765443 223455666677889999999864456665 4699
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCCEEEE
Q 000979 758 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIY 837 (1202)
Q Consensus 758 gGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~ 837 (1202)
+||||-|+|||||..+++||+||||||.|+......+.+.+++++++|.+||++||.++ ++++.|||+.+|.+ |+.+.
T Consensus 148 iaqrQ~VeIArAl~~~arllIlDEPTaaLt~~E~~~Lf~~ir~Lk~~Gv~ii~ISHrl~-Ei~~i~DritVlRD-G~~v~ 225 (500)
T COG1129 148 IAQRQMVEIARALSFDARVLILDEPTAALTVKETERLFDLIRRLKAQGVAIIYISHRLD-EVFEIADRITVLRD-GRVVG 225 (500)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCcHH-HHHHhcCEEEEEeC-CEEee
Confidence 99999999999999999999999999999999999999999999999999999999997 89999999999985 89999
Q ss_pred EcCC-Cc
Q 000979 838 VGPL-GR 843 (1202)
Q Consensus 838 ~G~~-~~ 843 (1202)
.++. .+
T Consensus 226 ~~~~~~~ 232 (500)
T COG1129 226 TRPTAAE 232 (500)
T ss_pred ecccccC
Confidence 9983 44
|
|
| >PRK09580 sufC cysteine desulfurase ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-35 Score=322.53 Aligned_cols=220 Identities=25% Similarity=0.288 Sum_probs=172.1
Q ss_pred eEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCC
Q 000979 604 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 683 (1202)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 683 (1202)
++++|+++.|+ ++.+|+|+|+++++||+++|+||||||||||+++|+|.....+.+|+|.++|.+..
T Consensus 2 i~~~nl~~~~~-------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~ 68 (248)
T PRK09580 2 LSIKDLHVSVE-------------DKAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLL 68 (248)
T ss_pred eEEEEEEEEeC-------------CeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCCceEEEECCCccc
Confidence 57889998874 23589999999999999999999999999999999998421146899999998764
Q ss_pred cc---c-ccceEEEeecCCCCCCCCCHHHHHHHHHH-ccC--C-CCCCHHHHHHHHHHHHHHcCCC-ccccccccCCCCC
Q 000979 684 QE---T-FARISGYCEQNDIHSPFVTIYESLLFSAW-LRL--S-PEVDSETRKMFIDEVMELVELN-PLRQSLVGLPGVS 754 (1202)
Q Consensus 684 ~~---~-~~~~~~~v~q~~~~~~~lTv~e~l~~~~~-~~~--~-~~~~~~~~~~~~~~~l~~l~l~-~~~~~~~~~~~~~ 754 (1202)
.. . .++.++|++|++.+++.+|+.+++.+... ++. . ......+.++.+++.++.+++. +..++.+ .+
T Consensus 69 ~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~----~~ 144 (248)
T PRK09580 69 ELSPEDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKMPEDLLTRSV----NV 144 (248)
T ss_pred cCCHHHHhhcceEEEecCchhccchhHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHcCCChhhcccCC----CC
Confidence 31 1 23468999999988888887777654321 110 0 0011222345677888988985 3444432 13
Q ss_pred CCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHh-cceEEEEecCC
Q 000979 755 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEA-FDELFLMKRGG 833 (1202)
Q Consensus 755 ~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~-~d~v~~l~~gG 833 (1202)
.||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||+++ .+... +|++++|+ +|
T Consensus 145 ~LS~G~~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~l~~~~~tiii~sH~~~-~~~~~~~d~i~~l~-~g 222 (248)
T PRK09580 145 GFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKIVADGVNSLRDGKRSFIIVTHYQR-ILDYIKPDYVHVLY-QG 222 (248)
T ss_pred CCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHhhhCCEEEEEE-CC
Confidence 69999999999999999999999999999999999999999999999877899999999976 34454 89999997 58
Q ss_pred EEEEEcCCC
Q 000979 834 QEIYVGPLG 842 (1202)
Q Consensus 834 ~~~~~G~~~ 842 (1202)
++++.|+.+
T Consensus 223 ~i~~~g~~~ 231 (248)
T PRK09580 223 RIVKSGDFT 231 (248)
T ss_pred eEEEeCCHH
Confidence 999999863
|
|
| >TIGR01166 cbiO cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-35 Score=311.78 Aligned_cols=179 Identities=26% Similarity=0.332 Sum_probs=150.3
Q ss_pred ceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCCc-----ccccceEEEeecCCC-CC
Q 000979 628 KLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ-----ETFARISGYCEQNDI-HS 701 (1202)
Q Consensus 628 ~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~-----~~~~~~~~~v~q~~~-~~ 701 (1202)
++.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+... ...++.++|++|++. .+
T Consensus 4 ~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 81 (190)
T TIGR01166 4 GPEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLR--PQSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQL 81 (190)
T ss_pred ccceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceeEEECCEEccccccchHHHHhhEEEEecChhhcc
Confidence 3468999999999999999999999999999999999876 458999999987531 124567899999973 23
Q ss_pred CCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeC
Q 000979 702 PFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDE 781 (1202)
Q Consensus 702 ~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~illlDE 781 (1202)
...||+||+.+..... ..+.++.+++++++++.+++.+..++.+ +.||||||||++|||||+.+|++|+|||
T Consensus 82 ~~~tv~~nl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~laral~~~p~llllDE 153 (190)
T TIGR01166 82 FAADVDQDVAFGPLNL---GLSEAEVERRVREALTAVGASGLRERPT-----HCLSGGEKKRVAIAGAVAMRPDVLLLDE 153 (190)
T ss_pred ccccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCchhhhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 3479999999865422 1233334456789999999987766653 5799999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCC
Q 000979 782 PTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPS 816 (1202)
Q Consensus 782 PtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~ 816 (1202)
||+|||+.+++.+.+.|++++++|+|||++||+++
T Consensus 154 Pt~~LD~~~~~~~~~~l~~~~~~~~tili~sH~~~ 188 (190)
T TIGR01166 154 PTAGLDPAGREQMLAILRRLRAEGMTVVISTHDVD 188 (190)
T ss_pred CcccCCHHHHHHHHHHHHHHHHcCCEEEEEeeccc
Confidence 99999999999999999999877999999999975
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux. |
| >cd03289 ABCC_CFTR2 The CFTR subfamily domain 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-35 Score=328.06 Aligned_cols=212 Identities=19% Similarity=0.283 Sum_probs=172.9
Q ss_pred eeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccC
Q 000979 603 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 682 (1202)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 682 (1202)
.++++|+++.|+. +...+|+|+||+|++||+++|+||||||||||+++|+|... .+|+|.++|.++
T Consensus 2 ~i~~~nls~~~~~-----------~~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~---~~G~I~i~g~~i 67 (275)
T cd03289 2 QMTVKDLTAKYTE-----------GGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN---TEGDIQIDGVSW 67 (275)
T ss_pred eEEEEEEEEEeCC-----------CCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC---CCcEEEECCEEh
Confidence 4789999999852 12348999999999999999999999999999999999875 269999999876
Q ss_pred Cc---ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccC------CCC
Q 000979 683 KQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGL------PGV 753 (1202)
Q Consensus 683 ~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~------~~~ 753 (1202)
.. ...++.++|++|++.+++ .|++||+.... .... +.+.+.++.+|+.+..+...+. .+.
T Consensus 68 ~~~~~~~lr~~i~~v~q~~~lf~-~tv~~nl~~~~------~~~~----~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g 136 (275)
T cd03289 68 NSVPLQKWRKAFGVIPQKVFIFS-GTFRKNLDPYG------KWSD----EEIWKVAEEVGLKSVIEQFPGQLDFVLVDGG 136 (275)
T ss_pred hhCCHHHHhhhEEEECCCcccch-hhHHHHhhhcc------CCCH----HHHHHHHHHcCCHHHHHhCcccccceecCCC
Confidence 43 345678999999999987 59999996321 1122 2356777888887654443221 123
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCC
Q 000979 754 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGG 833 (1202)
Q Consensus 754 ~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG 833 (1202)
..||||||||++|||||+.+|+||+|||||++||+.+...+.+.|+++. +++|||+++|+++ .+ ..|||+++|++ |
T Consensus 137 ~~LS~G~~qrl~LaRall~~p~illlDEpts~LD~~~~~~l~~~l~~~~-~~~tii~isH~~~-~i-~~~dri~vl~~-G 212 (275)
T cd03289 137 CVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPITYQVIRKTLKQAF-ADCTVILSEHRIE-AM-LECQRFLVIEE-N 212 (275)
T ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHhc-CCCEEEEEECCHH-HH-HhCCEEEEecC-C
Confidence 4599999999999999999999999999999999999999999999874 5899999999985 34 45999999985 8
Q ss_pred EEEEEcCCCc
Q 000979 834 QEIYVGPLGR 843 (1202)
Q Consensus 834 ~~~~~G~~~~ 843 (1202)
+++++|++++
T Consensus 213 ~i~~~g~~~~ 222 (275)
T cd03289 213 KVRQYDSIQK 222 (275)
T ss_pred eEeecCCHHH
Confidence 9999999853
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >PRK03695 vitamin B12-transporter ATPase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-35 Score=322.82 Aligned_cols=198 Identities=25% Similarity=0.371 Sum_probs=168.3
Q ss_pred EeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCCc---ccccceEEEeecCCCCCCCCCHH
Q 000979 631 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ---ETFARISGYCEQNDIHSPFVTIY 707 (1202)
Q Consensus 631 iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~---~~~~~~~~~v~q~~~~~~~lTv~ 707 (1202)
+|+|+||++++||+++|+||||||||||+++|+|..+ + +|+|.++|.++.. ...++.++|++|++.+++.+|++
T Consensus 11 ~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~--~-~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~tv~ 87 (248)
T PRK03695 11 RLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLP--G-SGSIQFAGQPLEAWSAAELARHRAYLSQQQTPPFAMPVF 87 (248)
T ss_pred eecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC--C-CeEEEECCEecCcCCHHHHhhheEEecccCccCCCccHH
Confidence 6999999999999999999999999999999999864 2 7999999987643 22345689999998888889999
Q ss_pred HHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhh-------CCCEEEEe
Q 000979 708 ESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVA-------NPSIIFMD 780 (1202)
Q Consensus 708 e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~aL~~-------~p~illlD 780 (1202)
||+.+.... ....++.+++++++++.+++.+..++. ++.||||||||++|||||+. +|++|+||
T Consensus 88 ~nl~~~~~~----~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrv~la~al~~~~~~~~p~p~llllD 158 (248)
T PRK03695 88 QYLTLHQPD----KTRTEAVASALNEVAEALGLDDKLGRS-----VNQLSGGEWQRVRLAAVVLQVWPDINPAGQLLLLD 158 (248)
T ss_pred HHHHhcCcc----CCCcHHHHHHHHHHHHHcCCHhHhcCC-----cccCCHHHHHHHHHHHHHhccccccCCCCCEEEEc
Confidence 999875321 112223345678999999998766665 35799999999999999998 67999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCCEEEEEcCCC
Q 000979 781 EPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLG 842 (1202)
Q Consensus 781 EPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G~~~ 842 (1202)
|||+|||+.++..+.+.|++++++|+|||++||+++ ++.+.+|++++|++ |+++..|+.+
T Consensus 159 EPt~~LD~~~~~~l~~~L~~~~~~~~tvi~~sH~~~-~~~~~~d~i~~l~~-G~i~~~g~~~ 218 (248)
T PRK03695 159 EPMNSLDVAQQAALDRLLSELCQQGIAVVMSSHDLN-HTLRHADRVWLLKQ-GKLLASGRRD 218 (248)
T ss_pred CCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCEEEEEEC-CEEEEECCHH
Confidence 999999999999999999999877999999999986 57889999999985 8999999864
|
|
| >TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-35 Score=312.40 Aligned_cols=195 Identities=24% Similarity=0.288 Sum_probs=161.9
Q ss_pred eEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCC
Q 000979 604 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 683 (1202)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 683 (1202)
++++|+++.|. ++.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+..
T Consensus 1 l~~~~l~~~~~-------------~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~ 65 (198)
T TIGR01189 1 LAARNLACSRG-------------ERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLR--PDSGEVRWNGTALA 65 (198)
T ss_pred CEEEEEEEEEC-------------CEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCccEEEECCEEcc
Confidence 35678888763 2468999999999999999999999999999999999876 45899999998753
Q ss_pred c--ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHH
Q 000979 684 Q--ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQR 761 (1202)
Q Consensus 684 ~--~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqr 761 (1202)
. ..+++.++|++|++.+++.+|+.||+.+....+. . + ++.++++++.+++.+..++.+ +.||||||
T Consensus 66 ~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~----~-~--~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~ 133 (198)
T TIGR01189 66 EQRDEPHRNILYLGHLPGLKPELSALENLHFWAAIHG----G-A--QRTIEDALAAVGLTGFEDLPA-----AQLSAGQQ 133 (198)
T ss_pred cchHHhhhheEEeccCcccccCCcHHHHHHHHHHHcC----C-c--HHHHHHHHHHcCCHHHhcCCh-----hhcCHHHH
Confidence 2 2245678999999888888999999987653321 1 1 234678899999987766653 57999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEE
Q 000979 762 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFL 828 (1202)
Q Consensus 762 qRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~ 828 (1202)
||++|||||+.+|++++|||||+|||+.++..+.+.|++++++|.|+|++||++.. -.+++++.
T Consensus 134 qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~---~~~~~~~~ 197 (198)
T TIGR01189 134 RRLALARLWLSRAPLWILDEPTTALDKAGVALLAGLLRAHLARGGIVLLTTHQDLG---LVEARELR 197 (198)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEEccccc---ccceEEee
Confidence 99999999999999999999999999999999999999987779999999999752 23466553
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c. |
| >cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-35 Score=326.78 Aligned_cols=211 Identities=27% Similarity=0.382 Sum_probs=162.9
Q ss_pred eEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCC
Q 000979 604 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 683 (1202)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 683 (1202)
++++|+++.|+. .+++.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+..
T Consensus 1 l~i~~l~~~~~~----------~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~~~ 68 (238)
T cd03249 1 IEFKNVSFRYPS----------RPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYD--PTSGEILLDGVDIR 68 (238)
T ss_pred CeEEEEEEecCC----------CCCccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCC--CCCCEEEECCEehh
Confidence 357888887741 012458999999999999999999999999999999999876 45899999998753
Q ss_pred c---ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHH-----HHHHHHHHc--CCCccccccccCCCC
Q 000979 684 Q---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKM-----FIDEVMELV--ELNPLRQSLVGLPGV 753 (1202)
Q Consensus 684 ~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~-----~~~~~l~~l--~l~~~~~~~~~~~~~ 753 (1202)
. ...++.++|++|++.+++ .||+||+.+.... ...++... .+.+.++.+ ++....+. ..
T Consensus 69 ~~~~~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~-----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-----~~ 137 (238)
T cd03249 69 DLNLRWLRSQIGLVSQEPVLFD-GTIAENIRYGKPD-----ATDEEVEEAAKKANIHDFIMSLPDGYDTLVGE-----RG 137 (238)
T ss_pred hcCHHHHHhhEEEECCchhhhh-hhHHHHhhccCCC-----CCHHHHHHHHHHcChHHHHHhhccccceeecc-----CC
Confidence 2 223467999999988776 6999999874321 11111100 112222222 22222222 24
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCC
Q 000979 754 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGG 833 (1202)
Q Consensus 754 ~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG 833 (1202)
+.||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|++++ +|+|||++||+++ ++ +.||++++|++ |
T Consensus 138 ~~LS~G~~qrv~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~-~g~~vi~~sh~~~-~~-~~~d~v~~l~~-G 213 (238)
T cd03249 138 SQLSGGQKQRIAIARALLRNPKILLLDEATSALDAESEKLVQEALDRAM-KGRTTIVIAHRLS-TI-RNADLIAVLQN-G 213 (238)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhc-CCCEEEEEeCCHH-HH-hhCCEEEEEEC-C
Confidence 6799999999999999999999999999999999999999999999986 7899999999986 34 48999999985 7
Q ss_pred EEEEEcCC
Q 000979 834 QEIYVGPL 841 (1202)
Q Consensus 834 ~~~~~G~~ 841 (1202)
++++.|+.
T Consensus 214 ~i~~~~~~ 221 (238)
T cd03249 214 QVVEQGTH 221 (238)
T ss_pred EEEEeCCH
Confidence 99999875
|
In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. |
| >cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-35 Score=324.94 Aligned_cols=210 Identities=25% Similarity=0.390 Sum_probs=165.5
Q ss_pred eeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccC
Q 000979 603 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 682 (1202)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 682 (1202)
.++++|++++++. ++.+|+|+||++++||+++|+|||||||||||++|+|..+ +.+|+|.++|.++
T Consensus 2 ~l~~~~l~~~~~~------------~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~ 67 (229)
T cd03254 2 EIEFENVNFSYDE------------KKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYD--PQKGQILIDGIDI 67 (229)
T ss_pred eEEEEEEEEecCC------------CCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC--CCCCEEEECCEeH
Confidence 4788999988741 1348999999999999999999999999999999999876 4589999999865
Q ss_pred Cc---ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCcccccc-------ccCCC
Q 000979 683 KQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSL-------VGLPG 752 (1202)
Q Consensus 683 ~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~-------~~~~~ 752 (1202)
.. ...++.++|++|++.+++. |++||+.+... .... ..+++.++.+++.+..+.. .+ ..
T Consensus 68 ~~~~~~~~~~~i~~~~q~~~~~~~-tv~~~~~~~~~-----~~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~ 136 (229)
T cd03254 68 RDISRKSLRSMIGVVLQDTFLFSG-TIMENIRLGRP-----NATD----EEVIEAAKEAGAHDFIMKLPNGYDTVLG-EN 136 (229)
T ss_pred HHcCHHHHhhhEEEecCCchhhhh-HHHHHHhccCC-----CCCH----HHHHHHHHHhChHHHHHhCcccccCHhh-cC
Confidence 32 2346679999999888775 99999986521 1111 1233344444443322211 11 12
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecC
Q 000979 753 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 832 (1202)
Q Consensus 753 ~~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~g 832 (1202)
++.||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|++++ +|+|||++||+++ ++ +.+|++++|++
T Consensus 137 ~~~LS~G~~~rv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~~~tii~~sh~~~-~~-~~~d~i~~l~~- 212 (229)
T cd03254 137 GGNLSQGERQLLAIARAMLRDPKILILDEATSNIDTETEKLIQEALEKLM-KGRTSIIIAHRLS-TI-KNADKILVLDD- 212 (229)
T ss_pred CCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhc-CCCEEEEEecCHH-HH-hhCCEEEEEeC-
Confidence 46799999999999999999999999999999999999999999999985 5899999999986 34 56999999985
Q ss_pred CEEEEEcCC
Q 000979 833 GQEIYVGPL 841 (1202)
Q Consensus 833 G~~~~~G~~ 841 (1202)
|++++.|+.
T Consensus 213 g~~~~~~~~ 221 (229)
T cd03254 213 GKIIEEGTH 221 (229)
T ss_pred CeEEEeCCH
Confidence 899988874
|
In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14252 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-34 Score=323.22 Aligned_cols=217 Identities=21% Similarity=0.223 Sum_probs=175.3
Q ss_pred CceeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCc---eEEEEEEE
Q 000979 601 PHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG---YITGNITI 677 (1202)
Q Consensus 601 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~---~~~G~i~~ 677 (1202)
+..++++|+++.|+ ++.+|+|+||++++||+++|+||||||||||+++|+|...+. +.+|+|.+
T Consensus 14 ~~~l~~~~l~~~~~-------------~~~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~ 80 (265)
T PRK14252 14 QQKSEVNKLNFYYG-------------GYQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIIL 80 (265)
T ss_pred CceEEEEEEEEEEC-------------CeeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEE
Confidence 34589999999884 235899999999999999999999999999999999976531 26899999
Q ss_pred cCccCC-------cccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCc----cccc
Q 000979 678 SGYPKK-------QETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP----LRQS 746 (1202)
Q Consensus 678 ~g~~~~-------~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~----~~~~ 746 (1202)
+|.+.. ...+++.++|++|++.+++. |++||+.+....... ......++.++++++.+++.+ ..+.
T Consensus 81 ~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~-tv~eni~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~l~~~~~~ 157 (265)
T PRK14252 81 HPDNVNILSPEVDPIEVRMRISMVFQKPNPFPK-SIFENVAYGLRIRGV--KRRSILEERVENALRNAALWDEVKDRLGD 157 (265)
T ss_pred cCccccccccccCHHHHhccEEEEccCCcCCcc-hHHHHHHhHHHHcCC--ChHHHHHHHHHHHHHHcCCchhhhHHHhC
Confidence 987642 12345679999999988885 999999876532211 111222345677788887642 2222
Q ss_pred cccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceE
Q 000979 747 LVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDEL 826 (1202)
Q Consensus 747 ~~~~~~~~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v 826 (1202)
. ...||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||++||+++ ++.+.+|++
T Consensus 158 ~-----~~~LS~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~-~~tiiivth~~~-~~~~~~d~i 230 (265)
T PRK14252 158 L-----AFNLSGGQQQRLCIARALATDPEILLFDEPTSALDPIATASIEELISDLKN-KVTILIVTHNMQ-QAARVSDYT 230 (265)
T ss_pred C-----cccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh-CCEEEEEecCHH-HHHHhCCEE
Confidence 2 357999999999999999999999999999999999999999999999865 689999999986 577899999
Q ss_pred EEEecCCEEEEEcCC
Q 000979 827 FLMKRGGQEIYVGPL 841 (1202)
Q Consensus 827 ~~l~~gG~~~~~G~~ 841 (1202)
++|++ |+++..|+.
T Consensus 231 ~~l~~-G~i~~~g~~ 244 (265)
T PRK14252 231 AYMYM-GELIEFGAT 244 (265)
T ss_pred EEEEC-CEEEEeCCH
Confidence 99984 899999986
|
|
| >TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-35 Score=357.07 Aligned_cols=216 Identities=22% Similarity=0.264 Sum_probs=176.9
Q ss_pred eEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcC----
Q 000979 604 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISG---- 679 (1202)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g---- 679 (1202)
++++|++++|. ++.+|+|+||++++||+++|+||||||||||+++|+|.....+.+|+|.++|
T Consensus 1 l~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~~~~~~ 67 (520)
T TIGR03269 1 IEVKNLTKKFD-------------GKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCE 67 (520)
T ss_pred CEEEEEEEEEC-------------CeEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCCceEEEEeccccc
Confidence 35788988873 2468999999999999999999999999999999999752114579999872
Q ss_pred -------------------ccCC----------c---ccccceEEEeecC-CCCCCCCCHHHHHHHHHHccCCCCCCHHH
Q 000979 680 -------------------YPKK----------Q---ETFARISGYCEQN-DIHSPFVTIYESLLFSAWLRLSPEVDSET 726 (1202)
Q Consensus 680 -------------------~~~~----------~---~~~~~~~~~v~q~-~~~~~~lTv~e~l~~~~~~~~~~~~~~~~ 726 (1202)
.++. . ...++.++|++|+ +.+++.+||+||+.+..... ....++
T Consensus 68 ~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~---~~~~~~ 144 (520)
T TIGR03269 68 KCGYVERPSKVGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEI---GYEGKE 144 (520)
T ss_pred cccccccccccccccccccccccccchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHc---CCCHHH
Confidence 1110 0 1234578999997 67888899999999865432 123344
Q ss_pred HHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CC
Q 000979 727 RKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TG 805 (1202)
Q Consensus 727 ~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~-~g 805 (1202)
.+++++++++.+|+.+..++. ++.|||||||||+|||||+.+|++|||||||+|||+.++..+.+.|+++++ .|
T Consensus 145 ~~~~~~~~l~~~gl~~~~~~~-----~~~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g 219 (520)
T TIGR03269 145 AVGRAVDLIEMVQLSHRITHI-----ARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASG 219 (520)
T ss_pred HHHHHHHHHHHcCChhhhhcC-----cccCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhcC
Confidence 456788999999998776665 357999999999999999999999999999999999999999999999965 48
Q ss_pred CEEEEEecCCCHHHHHhcceEEEEecCCEEEEEcCCC
Q 000979 806 RTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLG 842 (1202)
Q Consensus 806 ~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G~~~ 842 (1202)
+|||++||+++ .+.+.||++++|++ |++++.|+++
T Consensus 220 ~tviivtHd~~-~~~~~~d~i~~l~~-G~i~~~g~~~ 254 (520)
T TIGR03269 220 ISMVLTSHWPE-VIEDLSDKAIWLEN-GEIKEEGTPD 254 (520)
T ss_pred cEEEEEeCCHH-HHHHhcCEEEEEeC-CEEeeecCHH
Confidence 99999999986 46788999999985 7999988864
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. |
| >TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-35 Score=316.65 Aligned_cols=210 Identities=22% Similarity=0.262 Sum_probs=167.1
Q ss_pred eEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcC--c-
Q 000979 604 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISG--Y- 680 (1202)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g--~- 680 (1202)
++++|+++.|+.... .+.++.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++| .
T Consensus 2 l~~~~l~~~~~~~~~------~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~~~g~~ 73 (224)
T TIGR02324 2 LEVEDLSKTFTLHQQ------GGVRLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYL--PDSGRILVRHEGAW 73 (224)
T ss_pred EEEEeeEEEeecccC------CCcceEEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCCeEEEecCCCc
Confidence 578899988852100 0012469999999999999999999999999999999999876 4579999984 2
Q ss_pred -cCCc---cc----ccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCcc-ccccccCC
Q 000979 681 -PKKQ---ET----FARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPL-RQSLVGLP 751 (1202)
Q Consensus 681 -~~~~---~~----~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~-~~~~~~~~ 751 (1202)
+... .. .++.++|++|++.+++.+||+||+.+..... ....++.++.+.++++.+++.+. .+..
T Consensus 74 ~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~---- 146 (224)
T TIGR02324 74 VDLAQASPREVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLER---GVPREAARARARELLARLNIPERLWHLP---- 146 (224)
T ss_pred cchhhcCHHHHHHHHhcceEEEecccccCCCccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhhhCC----
Confidence 3211 11 2346899999999999999999998764322 12223334567889999999753 3443
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEe
Q 000979 752 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 830 (1202)
Q Consensus 752 ~~~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~ 830 (1202)
+.+||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||++. .+.+.+|+++.+.
T Consensus 147 -~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vsH~~~-~~~~~~d~i~~~~ 223 (224)
T TIGR02324 147 -PATFSGGEQQRVNIARGFIADYPILLLDEPTASLDAANRQVVVELIAEAKARGAALIGIFHDEE-VRELVADRVMDVT 223 (224)
T ss_pred -cccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcceeEecC
Confidence 3579999999999999999999999999999999999999999999999777999999999964 4567899998763
|
Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. |
| >cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-35 Score=306.64 Aligned_cols=170 Identities=29% Similarity=0.418 Sum_probs=150.1
Q ss_pred eEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCC
Q 000979 604 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 683 (1202)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 683 (1202)
++++|++++++ ++.+++|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+..
T Consensus 1 i~~~~l~~~~~-------------~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~ 65 (178)
T cd03229 1 LELKNVSKRYG-------------QKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEE--PDSGSILIDGEDLT 65 (178)
T ss_pred CEEEEEEEEEC-------------CeEEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEcc
Confidence 35788888773 2458999999999999999999999999999999999876 45899999998754
Q ss_pred c-----ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCH
Q 000979 684 Q-----ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLST 758 (1202)
Q Consensus 684 ~-----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSg 758 (1202)
. ...++.++|++|++.+++.+|++||+.+. |||
T Consensus 66 ~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~------------------------------------------lS~ 103 (178)
T cd03229 66 DLEDELPPLRRRIGMVFQDFALFPHLTVLENIALG------------------------------------------LSG 103 (178)
T ss_pred ccchhHHHHhhcEEEEecCCccCCCCCHHHheeec------------------------------------------CCH
Confidence 2 23457899999999888889999987541 899
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhcceEEEEec
Q 000979 759 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKR 831 (1202)
Q Consensus 759 GqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~ 831 (1202)
|||||++|||||+.+|++++|||||+|||+.++..+.+.|++++++ |+|+|+++|++. ++.+.+|++++|++
T Consensus 104 G~~qr~~la~al~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~ 176 (178)
T cd03229 104 GQQQRVALARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLD-EAARLADRVVVLRD 176 (178)
T ss_pred HHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEeC
Confidence 9999999999999999999999999999999999999999999877 899999999986 56678999999985
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14264 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-34 Score=327.51 Aligned_cols=223 Identities=23% Similarity=0.299 Sum_probs=175.9
Q ss_pred ceeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCC---ceEEEEEEEc
Q 000979 602 HSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG---GYITGNITIS 678 (1202)
Q Consensus 602 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~---~~~~G~i~~~ 678 (1202)
..+.++|+++.|+ ++.+|+++||++++||+++|+||||||||||+++|+|...+ .+.+|+|.++
T Consensus 44 ~~l~i~nl~~~~~-------------~~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~ 110 (305)
T PRK14264 44 AKLSVEDLDVYYG-------------DDHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELD 110 (305)
T ss_pred ceEEEEEEEEEeC-------------CeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEEC
Confidence 3588999999874 24589999999999999999999999999999999997542 2458999999
Q ss_pred CccCCc-----ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCC---------CCC-HHHHHHHHHHHHHHcCCCcc
Q 000979 679 GYPKKQ-----ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSP---------EVD-SETRKMFIDEVMELVELNPL 743 (1202)
Q Consensus 679 g~~~~~-----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~---------~~~-~~~~~~~~~~~l~~l~l~~~ 743 (1202)
|.++.. ...++.++|++|++.+++ .||+||+.+....+... ... .+..++.++++++.+++.+.
T Consensus 111 g~~i~~~~~~~~~~~~~i~~v~q~~~l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~ 189 (305)
T PRK14264 111 GQDIYQDGVNLVELRKRVGMVFQSPNPFP-KSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDE 189 (305)
T ss_pred CEEcccccccHHHHhhceEEEccCCcccc-ccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCchh
Confidence 987542 134567999999988887 59999999865321100 011 12234567888898887532
Q ss_pred ccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhc
Q 000979 744 RQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAF 823 (1202)
Q Consensus 744 ~~~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~ 823 (1202)
.+.... ..++.||||||||++|||||+++|+||||||||+|||+.++..+.+.|+++++ +.|||++||+++ .+.+.+
T Consensus 190 ~~~~~~-~~~~~LSgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~-~~tiiivtH~~~-~i~~~~ 266 (305)
T PRK14264 190 VNDRLD-DNALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAE-EYTVVVVTHNMQ-QAARIS 266 (305)
T ss_pred hhHHhc-CccccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEEcCHH-HHHHhc
Confidence 211111 12467999999999999999999999999999999999999999999999876 589999999986 577889
Q ss_pred ceEE-EEecCCEEEEEcCCC
Q 000979 824 DELF-LMKRGGQEIYVGPLG 842 (1202)
Q Consensus 824 d~v~-~l~~gG~~~~~G~~~ 842 (1202)
|+++ +|+ +|+++..|+++
T Consensus 267 d~i~~~l~-~G~i~~~g~~~ 285 (305)
T PRK14264 267 DQTAVFLT-GGELVEYDDTD 285 (305)
T ss_pred CEEEEEec-CCEEEEeCCHH
Confidence 9975 566 58999999863
|
|
| >COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-36 Score=309.56 Aligned_cols=191 Identities=24% Similarity=0.391 Sum_probs=167.8
Q ss_pred cceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCCc-------ccccceEEEeecCCCCCCCCCH
Q 000979 634 GVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ-------ETFARISGYCEQNDIHSPFVTI 706 (1202)
Q Consensus 634 ~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~-------~~~~~~~~~v~q~~~~~~~lTv 706 (1202)
++++..+.-.++||-|+||||||||+|+|+|... +..|.|.+||....+ ...+|.+|||+||..+||++||
T Consensus 16 ~a~~~~p~~GvTAlFG~SGsGKTslin~IaGL~r--PdeG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARLFpH~tV 93 (352)
T COG4148 16 DANFTLPARGITALFGPSGSGKTSLINMIAGLTR--PDEGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPHYTV 93 (352)
T ss_pred EEeccCCCCceEEEecCCCCChhhHHHHHhccCC--ccccEEEECCEEeecccCCcccChhhheeeeEeeccccccceEE
Confidence 5677777757999999999999999999999877 458999999975321 2356889999999999999999
Q ss_pred HHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCC
Q 000979 707 YESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 786 (1202)
Q Consensus 707 ~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgL 786 (1202)
+.||.|+.+.. .....+++.+.+|+.|..++.. ..|||||||||+|+|||+++|++|+||||.+.|
T Consensus 94 rgNL~YG~~~~---------~~~~fd~iv~lLGI~hLL~R~P-----~~LSGGEkQRVAIGRALLt~P~LLLmDEPLaSL 159 (352)
T COG4148 94 RGNLRYGMWKS---------MRAQFDQLVALLGIEHLLDRYP-----GTLSGGEKQRVAIGRALLTAPELLLMDEPLASL 159 (352)
T ss_pred ecchhhhhccc---------chHhHHHHHHHhCcHHHHhhCC-----CccCcchhhHHHHHHHHhcCCCeeeecCchhhc
Confidence 99999986421 2234689999999999999873 479999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhcceEEEEecCCEEEEEcCCC
Q 000979 787 DARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLG 842 (1202)
Q Consensus 787 D~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G~~~ 842 (1202)
|-..+.+++-.|.+++++ +..|+.+||.+. |+..++|++++|.+ |++..+|+.+
T Consensus 160 D~~RK~EilpylERL~~e~~IPIlYVSHS~~-Ev~RLAd~vV~le~-GkV~A~g~~e 214 (352)
T COG4148 160 DLPRKREILPYLERLRDEINIPILYVSHSLD-EVLRLADRVVVLEN-GKVKASGPLE 214 (352)
T ss_pred ccchhhHHHHHHHHHHHhcCCCEEEEecCHH-HHHhhhheEEEecC-CeEEecCcHH
Confidence 999999999999999876 889999999986 79999999999985 8999999964
|
|
| >TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-35 Score=362.01 Aligned_cols=216 Identities=26% Similarity=0.385 Sum_probs=174.5
Q ss_pred ceeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCcc
Q 000979 602 HSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP 681 (1202)
Q Consensus 602 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 681 (1202)
..++++|++|+|+. +++++|+|+|++++|||.++|+||||||||||+++|+|..+ +.+|+|.+||.+
T Consensus 315 ~~i~~~~v~~~y~~-----------~~~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~--~~~G~i~~~g~~ 381 (544)
T TIGR01842 315 GHLSVENVTIVPPG-----------GKKPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWP--PTSGSVRLDGAD 381 (544)
T ss_pred CeEEEEEEEEEcCC-----------CCccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEe
Confidence 46999999999852 22458999999999999999999999999999999999876 458999999987
Q ss_pred CCc---ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHH-----HHHHHHHHHcCCCccccccccCCCC
Q 000979 682 KKQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRK-----MFIDEVMELVELNPLRQSLVGLPGV 753 (1202)
Q Consensus 682 ~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~-----~~~~~~l~~l~l~~~~~~~~~~~~~ 753 (1202)
+.. ..+++.++||+|++.+++. |++||+.+.. +..++++.. ...++.++.+ .+-.|+.+|.. .
T Consensus 382 i~~~~~~~~~~~i~~v~q~~~lf~~-ti~~Ni~~~~-----~~~~~~~~~~~~~~~~~~~~i~~l--~~gl~t~~~~~-g 452 (544)
T TIGR01842 382 LKQWDRETFGKHIGYLPQDVELFPG-TVAENIARFG-----ENADPEKIIEAAKLAGVHELILRL--PDGYDTVIGPG-G 452 (544)
T ss_pred hhhCCHHHHhhheEEecCCcccccc-cHHHHHhccC-----CCCCHHHHHHHHHHhChHHHHHhC--ccccccccCCC-c
Confidence 643 3467889999999998875 9999998532 122332211 1122333332 22345666654 3
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCC
Q 000979 754 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGG 833 (1202)
Q Consensus 754 ~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG 833 (1202)
..||||||||++|||||+++|++|+|||||||||+.+++.+.+.|+++..+|+|+|+++|+++ ..+.+|++++|++ |
T Consensus 453 ~~LSgGq~qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~ith~~~--~~~~~d~i~~l~~-G 529 (544)
T TIGR01842 453 ATLSGGQRQRIALARALYGDPKLVVLDEPNSNLDEEGEQALANAIKALKARGITVVVITHRPS--LLGCVDKILVLQD-G 529 (544)
T ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEeCCccccCHHHHHHHHHHHHHHhhCCCEEEEEeCCHH--HHHhCCEEEEEEC-C
Confidence 569999999999999999999999999999999999999999999998666899999999985 4678999999985 8
Q ss_pred EEEEEcCCC
Q 000979 834 QEIYVGPLG 842 (1202)
Q Consensus 834 ~~~~~G~~~ 842 (1202)
+++..|+.+
T Consensus 530 ~i~~~g~~~ 538 (544)
T TIGR01842 530 RIARFGERD 538 (544)
T ss_pred EEEeeCCHH
Confidence 999999853
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >PRK10261 glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-35 Score=361.64 Aligned_cols=220 Identities=19% Similarity=0.254 Sum_probs=180.4
Q ss_pred eeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccC
Q 000979 603 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 682 (1202)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 682 (1202)
.++++|+++.|... .++.++|+||||++++||++||+||||||||||+++|+|... +.+|.|.++|...
T Consensus 12 ~l~v~~l~~~y~~~---------~~~~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~--p~~G~i~~~g~~~ 80 (623)
T PRK10261 12 VLAVENLNIAFMQE---------QQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLE--QAGGLVQCDKMLL 80 (623)
T ss_pred eEEEeceEEEecCC---------CCceeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCC--CCCeEEEECCEEe
Confidence 48899999988421 123569999999999999999999999999999999999876 3478888887532
Q ss_pred C-------------cc---cc-cceEEEeecCC--CCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCc-
Q 000979 683 K-------------QE---TF-ARISGYCEQND--IHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP- 742 (1202)
Q Consensus 683 ~-------------~~---~~-~~~~~~v~q~~--~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~- 742 (1202)
. .. .. ++.+|||+|++ .+++.+||+||+.+...... ..+..+.+++++++++.+||.+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~gL~~~ 158 (623)
T PRK10261 81 RRRSRQVIELSEQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQ--GASREEAMVEAKRMLDQVRIPEA 158 (623)
T ss_pred ccccccccccccCCHHHHHHHhCCCEEEEEeCchhhcCCCCCHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHCCCCCh
Confidence 1 00 12 24689999997 67888999999998765321 2234444567889999999964
Q ss_pred --cccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHH
Q 000979 743 --LRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDI 819 (1202)
Q Consensus 743 --~~~~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~ 819 (1202)
..+.. +.+|||||||||+|||||+.+|+||||||||++||+.++..+.++|++++++ |+|||++||++. .+
T Consensus 159 ~~~~~~~-----~~~LSgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~ll~~l~~~~g~tvi~itHdl~-~~ 232 (623)
T PRK10261 159 QTILSRY-----PHQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMG-VV 232 (623)
T ss_pred hhHHhCC-----CccCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HH
Confidence 23443 4579999999999999999999999999999999999999999999999765 899999999986 57
Q ss_pred HHhcceEEEEecCCEEEEEcCCC
Q 000979 820 FEAFDELFLMKRGGQEIYVGPLG 842 (1202)
Q Consensus 820 ~~~~d~v~~l~~gG~~~~~G~~~ 842 (1202)
.++|||+++|++ |+++..|++.
T Consensus 233 ~~~adri~vl~~-G~i~~~g~~~ 254 (623)
T PRK10261 233 AEIADRVLVMYQ-GEAVETGSVE 254 (623)
T ss_pred HHhCCEEEEeeC-CeecccCCHH
Confidence 789999999985 8999988864
|
|
| >PRK00635 excinuclease ABC subunit A; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-33 Score=367.32 Aligned_cols=136 Identities=22% Similarity=0.248 Sum_probs=107.8
Q ss_pred CCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCcc-ccccccCCCCCCCCHHHHHHHHHHHHHh---hCCC
Q 000979 700 HSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPL-RQSLVGLPGVSGLSTEQRKRLTIAVELV---ANPS 775 (1202)
Q Consensus 700 ~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~-~~~~~~~~~~~~LSgGqrqRv~ia~aL~---~~p~ 775 (1202)
.+...||.|+|.+...-...-....++.++++ ++++.+|+.+. .+.. ...||||||||++||++|+ .+|+
T Consensus 759 ~~~~~tI~evL~mtv~ea~~~f~~~~~i~~~l-~~L~~vGL~~l~l~q~-----~~tLSGGE~QRV~LAraL~~~~~~P~ 832 (1809)
T PRK00635 759 RYKGKNIADILEMTAYEAEKFFLDEPSIHEKI-HALCSLGLDYLPLGRP-----LSSLSGGEIQRLKLAYELLAPSKKPT 832 (1809)
T ss_pred ccCCCCHHHHHHcCHHHHHHcccChHHHHHHH-HHHHHcCCcchhhcCc-----cccCCHHHHHHHHHHHHHhhcCCCCC
Confidence 45567999999876541111111223334455 47888999765 4554 3579999999999999998 6999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEe-----cCCEEEEEcCCCc
Q 000979 776 IIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK-----RGGQEIYVGPLGR 843 (1202)
Q Consensus 776 illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~-----~gG~~~~~G~~~~ 843 (1202)
+|+|||||+|||+.+...+++.|++++++|.|||+++|++. .+ +.+|++++|. ++|+++..|++++
T Consensus 833 LLILDEPTsGLD~~~~~~Ll~lL~~L~~~G~TVIiIsHdl~-~i-~~aDrVi~L~p~gg~~~G~iv~~Gtpee 903 (1809)
T PRK00635 833 LYVLDEPTTGLHTHDIKALIYVLQSLTHQGHTVVIIEHNMH-VV-KVADYVLELGPEGGNLGGYLLASCSPEE 903 (1809)
T ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HH-HhCCEEEEEccCCCCCCCEEEEeCCHHH
Confidence 99999999999999999999999999888999999999986 34 8999999995 3689999999853
|
|
| >PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-35 Score=320.66 Aligned_cols=199 Identities=24% Similarity=0.325 Sum_probs=167.6
Q ss_pred eeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccC
Q 000979 603 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 682 (1202)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 682 (1202)
.++++|+++.|+ ++.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.
T Consensus 4 ~l~~~~l~~~~~-------------~~~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~--p~~G~i~~~~~-- 66 (251)
T PRK09544 4 LVSLENVSVSFG-------------QRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVA--PDEGVIKRNGK-- 66 (251)
T ss_pred EEEEeceEEEEC-------------CceEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCc--
Confidence 478899998874 2358999999999999999999999999999999999876 45899999862
Q ss_pred CcccccceEEEeecCCCCCCC--CCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHH
Q 000979 683 KQETFARISGYCEQNDIHSPF--VTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQ 760 (1202)
Q Consensus 683 ~~~~~~~~~~~v~q~~~~~~~--lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGq 760 (1202)
..++|++|++.+++. .|+.+++.+. .... ++.+.++++.+++.+..++. +..|||||
T Consensus 67 ------~~i~~v~q~~~~~~~l~~~~~~~~~~~------~~~~----~~~~~~~l~~~gl~~~~~~~-----~~~LSgGq 125 (251)
T PRK09544 67 ------LRIGYVPQKLYLDTTLPLTVNRFLRLR------PGTK----KEDILPALKRVQAGHLIDAP-----MQKLSGGE 125 (251)
T ss_pred ------cCEEEeccccccccccChhHHHHHhcc------cccc----HHHHHHHHHHcCChHHHhCC-----hhhCCHHH
Confidence 358999999877765 3788876532 1111 23367889999998777665 35799999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhcceEEEEecCCEEEEEc
Q 000979 761 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVG 839 (1202)
Q Consensus 761 rqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G 839 (1202)
|||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||+++ ++.+.+|++++|. + +++..|
T Consensus 126 ~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tiiivsH~~~-~i~~~~d~i~~l~-~-~i~~~g 202 (251)
T PRK09544 126 TQRVLLARALLNRPQLLVLDEPTQGVDVNGQVALYDLIDQLRRELDCAVLMVSHDLH-LVMAKTDEVLCLN-H-HICCSG 202 (251)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEC-C-ceEeeC
Confidence 99999999999999999999999999999999999999998765 899999999986 5778999999995 4 688999
Q ss_pred CCC
Q 000979 840 PLG 842 (1202)
Q Consensus 840 ~~~ 842 (1202)
+++
T Consensus 203 ~~~ 205 (251)
T PRK09544 203 TPE 205 (251)
T ss_pred CHH
Confidence 864
|
|
| >TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-34 Score=358.91 Aligned_cols=215 Identities=25% Similarity=0.348 Sum_probs=178.2
Q ss_pred CceeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCc
Q 000979 601 PHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGY 680 (1202)
Q Consensus 601 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~ 680 (1202)
...++++||+|+|+. .++.+|+|+|+++++||.++|+|+||||||||+++|+|..+ +.+|+|.+||.
T Consensus 328 ~~~i~~~~v~f~y~~-----------~~~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~--~~~G~I~i~g~ 394 (571)
T TIGR02203 328 RGDVEFRNVTFRYPG-----------RDRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYE--PDSGQILLDGH 394 (571)
T ss_pred CCeEEEEEEEEEcCC-----------CCCccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccC--CCCCeEEECCE
Confidence 346999999999852 12358999999999999999999999999999999999877 45899999998
Q ss_pred cCCc---ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCC-------ccccccccC
Q 000979 681 PKKQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELN-------PLRQSLVGL 750 (1202)
Q Consensus 681 ~~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-------~~~~~~~~~ 750 (1202)
++++ ..+++.++||+|++.+++ .|++||+.++. +++.+++ +++++++.+++. +-.|+.+|.
T Consensus 395 ~i~~~~~~~~~~~i~~v~Q~~~lf~-~Ti~~Ni~~~~----~~~~~~~----~i~~~l~~~~l~~~i~~lp~gldt~i~~ 465 (571)
T TIGR02203 395 DLADYTLASLRRQVALVSQDVVLFN-DTIANNIAYGR----TEQADRA----EIERALAAAYAQDFVDKLPLGLDTPIGE 465 (571)
T ss_pred eHHhcCHHHHHhhceEEccCccccc-ccHHHHHhcCC----CCCCCHH----HHHHHHHHcChHHHHHhCcCcccceecC
Confidence 7643 456788999999998875 69999998752 1123332 356666666654 335667776
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEe
Q 000979 751 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 830 (1202)
Q Consensus 751 ~~~~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~ 830 (1202)
.+ +.||||||||++||||++++|+|++||||||+||+.+++.+.+.|+++. +++|+|++||+++ ..+.||++++|+
T Consensus 466 ~g-~~LSgGqrQRiaLARall~~~~illLDEpts~LD~~~~~~i~~~L~~~~-~~~tiIiitH~~~--~~~~~D~ii~l~ 541 (571)
T TIGR02203 466 NG-VLLSGGQRQRLAIARALLKDAPILILDEATSALDNESERLVQAALERLM-QGRTTLVIAHRLS--TIEKADRIVVMD 541 (571)
T ss_pred CC-CcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHh-CCCEEEEEehhhH--HHHhCCEEEEEe
Confidence 54 5699999999999999999999999999999999999999999999874 5799999999984 678899999998
Q ss_pred cCCEEEEEcCCC
Q 000979 831 RGGQEIYVGPLG 842 (1202)
Q Consensus 831 ~gG~~~~~G~~~ 842 (1202)
+ |+++..|+.+
T Consensus 542 ~-g~i~~~g~~~ 552 (571)
T TIGR02203 542 D-GRIVERGTHN 552 (571)
T ss_pred C-CEEEeeCCHH
Confidence 5 8999988853
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes. |
| >PTZ00265 multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-35 Score=386.65 Aligned_cols=215 Identities=22% Similarity=0.351 Sum_probs=170.8
Q ss_pred ceeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEc-Cc
Q 000979 602 HSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITIS-GY 680 (1202)
Q Consensus 602 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~-g~ 680 (1202)
..++++||+|+|+.+ .++++|+|+||++++||++||+||||||||||+++|+|..+ +.+|+|.++ |.
T Consensus 381 ~~I~~~nVsf~Y~~~----------~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~--p~~G~I~i~~g~ 448 (1466)
T PTZ00265 381 KKIQFKNVRFHYDTR----------KDVEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLYD--PTEGDIIINDSH 448 (1466)
T ss_pred CcEEEEEEEEEcCCC----------CCCceeccceEEEcCCCEEEEECCCCCCHHHHHHHHHHhcc--CCCCeEEEeCCc
Confidence 379999999999632 12458999999999999999999999999999999999876 568999995 56
Q ss_pred cCCc---ccccceEEEeecCCCCCCCCCHHHHHHHHHHc-cC--------CC------C---------------------
Q 000979 681 PKKQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWL-RL--------SP------E--------------------- 721 (1202)
Q Consensus 681 ~~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~-~~--------~~------~--------------------- 721 (1202)
++.. ..+|+.+|||+|++.+++ .|++||+.++... +. .. +
T Consensus 449 ~i~~~~~~~lr~~Ig~V~Q~~~LF~-~TI~eNI~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 527 (1466)
T PTZ00265 449 NLKDINLKWWRSKIGVVSQDPLLFS-NSIKNNIKYSLYSLKDLEALSNYYNEDGNDSQENKNKRNSCRAKCAGDLNDMSN 527 (1466)
T ss_pred chhhCCHHHHHHhccEecccccchh-ccHHHHHHhcCCCccccchhccccccccccccccccccccccccccchhhhccc
Confidence 6533 346788999999999987 5999999986310 00 00 0
Q ss_pred ---C---------CHHHHHHHHHHHHHHcCCCc-------cccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCC
Q 000979 722 ---V---------DSETRKMFIDEVMELVELNP-------LRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEP 782 (1202)
Q Consensus 722 ---~---------~~~~~~~~~~~~l~~l~l~~-------~~~~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~illlDEP 782 (1202)
. .....++.+.++++.+++.+ ..|+.+|.. ...||||||||++|||||+++|+||+||||
T Consensus 528 ~~~~~~~l~~~~~~~~~~~~~v~~a~~~~~l~~~i~~lp~g~dT~vg~~-g~~LSGGQkQRiaIARAll~~P~ILlLDEp 606 (1466)
T PTZ00265 528 TTDSNELIEMRKNYQTIKDSEVVDVSKKVLIHDFVSALPDKYETLVGSN-ASKLSGGQKQRISIARAIIRNPKILILDEA 606 (1466)
T ss_pred ccchhhhhhcccccccCCHHHHHHHHHHhCcHHHHHhCccccCceeCCC-CCcCCHHHHHHHHHHHHHhcCCCEEEEeCc
Confidence 0 00011234666767666543 346666665 356999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCCHHHHHhcceEEEEecC
Q 000979 783 TSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKRG 832 (1202)
Q Consensus 783 tsgLD~~~~~~v~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~v~~l~~g 832 (1202)
||+||+.++..+++.|+++++ +|+|+|+++|+++ ..+.+|++++|++|
T Consensus 607 TSaLD~~se~~i~~~L~~~~~~~g~TvIiIsHrls--~i~~aD~Iivl~~g 655 (1466)
T PTZ00265 607 TSSLDNKSEYLVQKTINNLKGNENRITIIIAHRLS--TIRYANTIFVLSNR 655 (1466)
T ss_pred ccccCHHHHHHHHHHHHHHhhcCCCEEEEEeCCHH--HHHhCCEEEEEeCC
Confidence 999999999999999999875 5899999999986 34789999999863
|
|
| >PRK13540 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-34 Score=310.14 Aligned_cols=194 Identities=23% Similarity=0.302 Sum_probs=163.2
Q ss_pred eEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCC
Q 000979 604 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 683 (1202)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 683 (1202)
++++|+++++. ++++|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+..
T Consensus 2 l~~~~l~~~~~-------------~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~--~~~G~v~~~g~~~~ 66 (200)
T PRK13540 2 LDVIELDFDYH-------------DQPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLN--PEKGEILFERQSIK 66 (200)
T ss_pred EEEEEEEEEeC-------------CeeEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCeeEEECCCccc
Confidence 57889998873 2458999999999999999999999999999999999876 45899999998764
Q ss_pred c--ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHH
Q 000979 684 Q--ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQR 761 (1202)
Q Consensus 684 ~--~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqr 761 (1202)
. ..+++.++|++|+..+++.+||+||+.+..... .. +..++++++.+++.+..++.+ ..||||||
T Consensus 67 ~~~~~~~~~i~~~~q~~~~~~~~tv~~~~~~~~~~~------~~--~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~ 133 (200)
T PRK13540 67 KDLCTYQKQLCFVGHRSGINPYLTLRENCLYDIHFS------PG--AVGITELCRLFSLEHLIDYPC-----GLLSSGQK 133 (200)
T ss_pred cCHHHHHhheEEeccccccCcCCCHHHHHHHHHhcC------cc--hHHHHHHHHHcCCchhhhCCh-----hhcCHHHH
Confidence 2 234677999999988888999999998864211 11 134788999999977666543 47999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEE
Q 000979 762 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELF 827 (1202)
Q Consensus 762 qRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~ 827 (1202)
||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++|.|+|++||++. ..+.+|..+
T Consensus 134 ~rv~laral~~~p~~lilDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~--~~~~~d~~~ 197 (200)
T PRK13540 134 RQVALLRLWMSKAKLWLLDEPLVALDELSLLTIITKIQEHRAKGGAVLLTSHQDL--PLNKADYEE 197 (200)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHcCCEEEEEeCCch--hccccchhh
Confidence 9999999999999999999999999999999999999998777999999999975 346676544
|
|
| >PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-34 Score=334.95 Aligned_cols=209 Identities=20% Similarity=0.277 Sum_probs=170.6
Q ss_pred eeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccC
Q 000979 603 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 682 (1202)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 682 (1202)
.++++|+++.+.. ...+.+|+|+||++++||+++|+|||||||||||++|+|..+ +.+|+|.++|.+.
T Consensus 21 mL~lknL~~~~~~----------~~~~~IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~--P~sGeI~I~G~~~ 88 (549)
T PRK13545 21 FDKLKDLFFRSKD----------GEYHYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTM--PNKGTVDIKGSAA 88 (549)
T ss_pred eeEEEEEEEecCC----------CccceEEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCC--CCceEEEECCEee
Confidence 3667777766531 112468999999999999999999999999999999999876 4589999999641
Q ss_pred CcccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHH
Q 000979 683 KQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRK 762 (1202)
Q Consensus 683 ~~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrq 762 (1202)
++.+...+.+.+|++||+.+..... ..+.++.++.++++++.+++.+..++.+ +.|||||||
T Consensus 89 ----------~i~~~~~l~~~lTV~EnL~l~~~~~---~~~~~e~~e~i~elLe~lgL~~~ld~~~-----~~LSGGQrQ 150 (549)
T PRK13545 89 ----------LIAISSGLNGQLTGIENIELKGLMM---GLTKEKIKEIIPEIIEFADIGKFIYQPV-----KTYSSGMKS 150 (549)
T ss_pred ----------eEEeccccCCCCcHHHHHHhhhhhc---CCCHHHHHHHHHHHHHHcCChhHhhCCc-----ccCCHHHHH
Confidence 1223345567789999998754322 1233344456788999999987766653 579999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCCEEEEEcCCC
Q 000979 763 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLG 842 (1202)
Q Consensus 763 Rv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G~~~ 842 (1202)
|++|||||+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||+++ .+.+.||++++|++ |+++..|+++
T Consensus 151 RVaLArAL~~~P~LLLLDEPTsgLD~~sr~~LlelL~el~~~G~TIIIVSHdl~-~i~~l~DrIivL~~-GkIv~~G~~~ 228 (549)
T PRK13545 151 RLGFAISVHINPDILVIDEALSVGDQTFTKKCLDKMNEFKEQGKTIFFISHSLS-QVKSFCTKALWLHY-GQVKEYGDIK 228 (549)
T ss_pred HHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECCHH-HHHHhCCEEEEEEC-CEEEEECCHH
Confidence 999999999999999999999999999999999999998777999999999986 57788999999985 8999999875
Q ss_pred c
Q 000979 843 R 843 (1202)
Q Consensus 843 ~ 843 (1202)
+
T Consensus 229 e 229 (549)
T PRK13545 229 E 229 (549)
T ss_pred H
Confidence 3
|
|
| >cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos) | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-35 Score=305.88 Aligned_cols=170 Identities=24% Similarity=0.417 Sum_probs=149.5
Q ss_pred eEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCC
Q 000979 604 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 683 (1202)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 683 (1202)
++++|+++.| +|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+..
T Consensus 5 l~~~~l~~~~-----------------~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~ 65 (182)
T cd03215 5 LEVRGLSVKG-----------------AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRP--PASGEITLDGKPVT 65 (182)
T ss_pred EEEeccEEEe-----------------eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEECC
Confidence 6778887654 5999999999999999999999999999999999876 45899999998764
Q ss_pred cc----cccceEEEeecCC---CCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCC
Q 000979 684 QE----TFARISGYCEQND---IHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGL 756 (1202)
Q Consensus 684 ~~----~~~~~~~~v~q~~---~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~L 756 (1202)
.. ..++.++|++|++ .+++.+|++||+.+... |
T Consensus 66 ~~~~~~~~~~~i~~~~q~~~~~~~~~~~t~~e~l~~~~~----------------------------------------L 105 (182)
T cd03215 66 RRSPRDAIRAGIAYVPEDRKREGLVLDLSVAENIALSSL----------------------------------------L 105 (182)
T ss_pred ccCHHHHHhCCeEEecCCcccCcccCCCcHHHHHHHHhh----------------------------------------c
Confidence 32 2456799999984 57888999999976420 8
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCCE
Q 000979 757 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQ 834 (1202)
Q Consensus 757 SgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~ 834 (1202)
|||||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++|+|+|+++|+++ ++.+.+|++++|++ |+
T Consensus 106 S~G~~qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~-~~~~~~d~v~~l~~-G~ 181 (182)
T cd03215 106 SGGNQQKVVLARWLARDPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVLLISSELD-ELLGLCDRILVMYE-GR 181 (182)
T ss_pred CHHHHHHHHHHHHHccCCCEEEECCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEecC-Cc
Confidence 999999999999999999999999999999999999999999998777899999999986 67888999999985 55
|
The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. |
| >cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-35 Score=317.85 Aligned_cols=209 Identities=23% Similarity=0.325 Sum_probs=167.0
Q ss_pred eeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccC
Q 000979 603 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 682 (1202)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 682 (1202)
.++++|++++++. +++.+|+|+||++++||+++|+||||||||||+++|+|... +.+|+|.++|.+.
T Consensus 2 ~l~~~~l~~~~~~-----------~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~ 68 (221)
T cd03244 2 DIEFKNVSLRYRP-----------NLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVE--LSSGSILIDGVDI 68 (221)
T ss_pred cEEEEEEEEecCC-----------CCcccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCC--CCCCEEEECCEEh
Confidence 4788999998741 12358999999999999999999999999999999999866 4589999999875
Q ss_pred Cc---ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccc-------cccCCC
Q 000979 683 KQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQS-------LVGLPG 752 (1202)
Q Consensus 683 ~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~-------~~~~~~ 752 (1202)
.. ..+++.++|++|++.+++ .|++||+.+.. .... +.+.+.++.+++.+..+. ... ..
T Consensus 69 ~~~~~~~~~~~i~~~~q~~~l~~-~tv~enl~~~~------~~~~----~~~~~~~~~~~l~~~~~~l~~~l~~~~~-~~ 136 (221)
T cd03244 69 SKIGLHDLRSRISIIPQDPVLFS-GTIRSNLDPFG------EYSD----EELWQALERVGLKEFVESLPGGLDTVVE-EG 136 (221)
T ss_pred HhCCHHHHhhhEEEECCCCcccc-chHHHHhCcCC------CCCH----HHHHHHHHHhCcHHHHHhcccccccccc-cC
Confidence 32 235678999999988776 69999986431 1111 224556666666543321 111 12
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecC
Q 000979 753 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 832 (1202)
Q Consensus 753 ~~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~g 832 (1202)
...||||||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++.+ +.|||++||+++ ++ ..+|++++|++
T Consensus 137 ~~~LS~G~~qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~~-~~-~~~d~i~~l~~- 212 (221)
T cd03244 137 GENLSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREAFK-DCTVLTIAHRLD-TI-IDSDRILVLDK- 212 (221)
T ss_pred CCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcC-CCEEEEEeCCHH-HH-hhCCEEEEEEC-
Confidence 467999999999999999999999999999999999999999999999854 689999999986 34 45999999985
Q ss_pred CEEEEEcC
Q 000979 833 GQEIYVGP 840 (1202)
Q Consensus 833 G~~~~~G~ 840 (1202)
|+++..|+
T Consensus 213 g~~~~~~~ 220 (221)
T cd03244 213 GRVVEFDS 220 (221)
T ss_pred CeEEecCC
Confidence 89998876
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-33 Score=334.76 Aligned_cols=199 Identities=25% Similarity=0.330 Sum_probs=158.4
Q ss_pred CceeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCc
Q 000979 601 PHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGY 680 (1202)
Q Consensus 601 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~ 680 (1202)
+.-++++|+++.|+ +++.+++++||.+++|+.+||+||||+|||||||+|+|... +.+|.|.+.-.
T Consensus 319 ~~vl~~~~~~~~y~------------~~~~l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~--~~~G~v~~g~~ 384 (530)
T COG0488 319 KLVLEFENVSKGYD------------GGRLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELG--PLSGTVKVGET 384 (530)
T ss_pred CeeEEEeccccccC------------CCceeecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhcc--cCCceEEeCCc
Confidence 34689999999884 23679999999999999999999999999999999999765 33788876321
Q ss_pred cCCcccccceEEEeecCC-CCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccc-cccccCCCCCCCCH
Q 000979 681 PKKQETFARISGYCEQND-IHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLR-QSLVGLPGVSGLST 758 (1202)
Q Consensus 681 ~~~~~~~~~~~~~v~q~~-~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~-~~~~~~~~~~~LSg 758 (1202)
-.+||..|+. .+.+..|+.|++.-.. +... +..+...+..+++..-. .+. ++.|||
T Consensus 385 --------v~igyf~Q~~~~l~~~~t~~d~l~~~~-----~~~~----e~~~r~~L~~f~F~~~~~~~~-----v~~LSG 442 (530)
T COG0488 385 --------VKIGYFDQHRDELDPDKTVLEELSEGF-----PDGD----EQEVRAYLGRFGFTGEDQEKP-----VGVLSG 442 (530)
T ss_pred --------eEEEEEEehhhhcCccCcHHHHHHhhC-----cccc----HHHHHHHHHHcCCChHHHhCc-----hhhcCH
Confidence 2479999986 4457779999886431 1111 34477889999987532 233 457999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCCEEEEE
Q 000979 759 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYV 838 (1202)
Q Consensus 759 GqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~ 838 (1202)
|||.|+.+|+.++.+|.+|+|||||+.||..+...+-+.|.+. .-|||+|+||.. -+-..+++++.+.+ +-..|.
T Consensus 443 GEk~Rl~La~ll~~~pNvLiLDEPTNhLDi~s~~aLe~aL~~f---~Gtvl~VSHDr~-Fl~~va~~i~~~~~-~~~~~~ 517 (530)
T COG0488 443 GEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEALEEALLDF---EGTVLLVSHDRY-FLDRVATRIWLVED-KVEEFE 517 (530)
T ss_pred hHHHHHHHHHHhccCCCEEEEcCCCccCCHHHHHHHHHHHHhC---CCeEEEEeCCHH-HHHhhcceEEEEcC-ceeEcC
Confidence 9999999999999999999999999999999999999999875 349999999975 57788999999975 333344
Q ss_pred cC
Q 000979 839 GP 840 (1202)
Q Consensus 839 G~ 840 (1202)
|.
T Consensus 518 g~ 519 (530)
T COG0488 518 GG 519 (530)
T ss_pred CC
Confidence 55
|
|
| >cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-34 Score=307.35 Aligned_cols=184 Identities=25% Similarity=0.299 Sum_probs=154.7
Q ss_pred eEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCC
Q 000979 604 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 683 (1202)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 683 (1202)
++++|++++|+ ++.+|+|+||++++||+++|+||||||||||+++|+|.....+.+|+|.++|.+..
T Consensus 1 l~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~ 67 (200)
T cd03217 1 LEIKDLHVSVG-------------GKEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDIT 67 (200)
T ss_pred CeEEEEEEEeC-------------CEEeeeccceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECC
Confidence 35788888773 23589999999999999999999999999999999998421256899999998764
Q ss_pred cc---c-ccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHH
Q 000979 684 QE---T-FARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTE 759 (1202)
Q Consensus 684 ~~---~-~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgG 759 (1202)
.. . .++.++|++|++.+++..|+++++. .. .+.||||
T Consensus 68 ~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~l~----------------------------------~~-----~~~LS~G 108 (200)
T cd03217 68 DLPPEERARLGIFLAFQYPPEIPGVKNADFLR----------------------------------YV-----NEGFSGG 108 (200)
T ss_pred cCCHHHHhhCcEEEeecChhhccCccHHHHHh----------------------------------hc-----cccCCHH
Confidence 31 1 2345999999988888888877650 00 1359999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHH-hcceEEEEecCCEEEEE
Q 000979 760 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFE-AFDELFLMKRGGQEIYV 838 (1202)
Q Consensus 760 qrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~-~~d~v~~l~~gG~~~~~ 838 (1202)
||||++|||+|+.+|++++|||||+|||+.++..+.+.|++++++|+|+|++||+++ .+.+ .+|++++|++ |+++..
T Consensus 109 ~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~L~~~~~~~~tiii~sh~~~-~~~~~~~d~i~~l~~-G~i~~~ 186 (200)
T cd03217 109 EKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLIITHYQR-LLDYIKPDRVHVLYD-GRIVKS 186 (200)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhhCCEEEEEEC-CEEEEE
Confidence 999999999999999999999999999999999999999999777899999999986 4555 7999999985 899999
Q ss_pred cCC
Q 000979 839 GPL 841 (1202)
Q Consensus 839 G~~ 841 (1202)
|+.
T Consensus 187 ~~~ 189 (200)
T cd03217 187 GDK 189 (200)
T ss_pred ccH
Confidence 853
|
Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. |
| >cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-35 Score=321.91 Aligned_cols=209 Identities=25% Similarity=0.394 Sum_probs=163.1
Q ss_pred eEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCC
Q 000979 604 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 683 (1202)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 683 (1202)
++++|+++.|+ +++.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.
T Consensus 1 l~~~~l~~~~~------------~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~--~~~G~v~~~g~~~~ 66 (236)
T cd03253 1 IEFENVTFAYD------------PGRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYD--VSSGSILIDGQDIR 66 (236)
T ss_pred CEEEEEEEEeC------------CCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccC--CCCCEEEECCEEhh
Confidence 35788888773 12348999999999999999999999999999999999876 45899999998754
Q ss_pred c---ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccc-------cccccCCCC
Q 000979 684 Q---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLR-------QSLVGLPGV 753 (1202)
Q Consensus 684 ~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~-------~~~~~~~~~ 753 (1202)
. ..+++.++|++|++.+++ .|++||+.+... ...... +.+.++..++.+.. ++.... ..
T Consensus 67 ~~~~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~-----~~~~~~----~~~~~~~~~l~~~~~~l~~~~~~~~~~-~~ 135 (236)
T cd03253 67 EVTLDSLRRAIGVVPQDTVLFN-DTIGYNIRYGRP-----DATDEE----VIEAAKAAQIHDKIMRFPDGYDTIVGE-RG 135 (236)
T ss_pred hCCHHHHHhhEEEECCCChhhc-chHHHHHhhcCC-----CCCHHH----HHHHHHHcCcHHHHHhccccccchhhc-CC
Confidence 2 234567999999988875 699999987531 111111 22233333332211 111111 24
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCC
Q 000979 754 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGG 833 (1202)
Q Consensus 754 ~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG 833 (1202)
+.||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++++ |+|||+++|+++ .+ ..+|++++|++ |
T Consensus 136 ~~LS~G~~~rl~la~aL~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sh~~~-~~-~~~d~~~~l~~-g 211 (236)
T cd03253 136 LKLSGGEKQRVAIARAILKNPPILLLDEATSALDTHTEREIQAALRDVSK-GRTTIVIAHRLS-TI-VNADKIIVLKD-G 211 (236)
T ss_pred CcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhcC-CCEEEEEcCCHH-HH-HhCCEEEEEEC-C
Confidence 57999999999999999999999999999999999999999999999876 999999999986 34 45999999985 7
Q ss_pred EEEEEcCC
Q 000979 834 QEIYVGPL 841 (1202)
Q Consensus 834 ~~~~~G~~ 841 (1202)
+++..|+.
T Consensus 212 ~i~~~~~~ 219 (236)
T cd03253 212 RIVERGTH 219 (236)
T ss_pred EEEeeCCH
Confidence 99988875
|
Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-34 Score=353.02 Aligned_cols=222 Identities=20% Similarity=0.256 Sum_probs=180.8
Q ss_pred eeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCc---eEEEEEEEcC
Q 000979 603 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG---YITGNITISG 679 (1202)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~---~~~G~i~~~g 679 (1202)
.++++|++++|+.. .+.+.+|+|+||++++||++||+||||||||||+++|+|..++. +.+|+|.++|
T Consensus 5 ~l~~~~l~~~~~~~---------~~~~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g 75 (529)
T PRK15134 5 LLAIENLSVAFRQQ---------QTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHG 75 (529)
T ss_pred eEEEeceEEEecCC---------CCceeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECC
Confidence 37899999988411 01246899999999999999999999999999999999986531 3589999999
Q ss_pred ccCCcc------cc-cceEEEeecCCC--CCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCcc---cccc
Q 000979 680 YPKKQE------TF-ARISGYCEQNDI--HSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPL---RQSL 747 (1202)
Q Consensus 680 ~~~~~~------~~-~~~~~~v~q~~~--~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~---~~~~ 747 (1202)
.++... .. ++.+||++|++. +.+.+|+.|++.+...... ..+..+.+++++++++.+++.+. .++.
T Consensus 76 ~~i~~~~~~~~~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~ 153 (529)
T PRK15134 76 ESLLHASEQTLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHR--GMRREAARGEILNCLDRVGIRQAAKRLTDY 153 (529)
T ss_pred EecccCCHHHHHHHhcCceEEEecCchhhcCchhhHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHCCCCChHHHHhhC
Confidence 876421 12 246999999974 5677899999876533211 12334455678899999999753 3444
Q ss_pred ccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhcceE
Q 000979 748 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDEL 826 (1202)
Q Consensus 748 ~~~~~~~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v 826 (1202)
+.+|||||||||+|||||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||+++ .+.+.|||+
T Consensus 154 -----~~~LSgGe~qrv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~-~~~~~~dri 227 (529)
T PRK15134 154 -----PHQLSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNLS-IVRKLADRV 227 (529)
T ss_pred -----CcccCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHHHHHhcCCeEEEEcCcHH-HHHHhcCEE
Confidence 3579999999999999999999999999999999999999999999999765 899999999986 577889999
Q ss_pred EEEecCCEEEEEcCCC
Q 000979 827 FLMKRGGQEIYVGPLG 842 (1202)
Q Consensus 827 ~~l~~gG~~~~~G~~~ 842 (1202)
++|++ |++++.|+++
T Consensus 228 ~~l~~-G~i~~~g~~~ 242 (529)
T PRK15134 228 AVMQN-GRCVEQNRAA 242 (529)
T ss_pred EEEEC-CEEEEeCCHH
Confidence 99985 8999999864
|
|
| >cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-35 Score=303.76 Aligned_cols=169 Identities=28% Similarity=0.455 Sum_probs=146.9
Q ss_pred eEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCC
Q 000979 604 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 683 (1202)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 683 (1202)
++++|++++|+. .++.+++|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+..
T Consensus 1 i~~~~l~~~~~~-----------~~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~--~~~G~i~~~g~~~~ 67 (173)
T cd03246 1 LEVENVSFRYPG-----------AEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLR--PTSGRVRLDGADIS 67 (173)
T ss_pred CEEEEEEEEcCC-----------CCCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccC--CCCCeEEECCEEcc
Confidence 357888887741 12358999999999999999999999999999999999876 45899999998754
Q ss_pred c---ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHH
Q 000979 684 Q---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQ 760 (1202)
Q Consensus 684 ~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGq 760 (1202)
. ..+++.++|++|++.+++ .|++||+ |||||
T Consensus 68 ~~~~~~~~~~i~~~~q~~~~~~-~tv~~~l---------------------------------------------LS~G~ 101 (173)
T cd03246 68 QWDPNELGDHVGYLPQDDELFS-GSIAENI---------------------------------------------LSGGQ 101 (173)
T ss_pred cCCHHHHHhheEEECCCCcccc-CcHHHHC---------------------------------------------cCHHH
Confidence 3 234667999999988777 4998876 89999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCCE
Q 000979 761 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQ 834 (1202)
Q Consensus 761 rqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~ 834 (1202)
|||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++|+|+|++||+++ .+ +.+|++++|++ |+
T Consensus 102 ~qrv~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~-~~-~~~d~v~~l~~-G~ 172 (173)
T cd03246 102 RQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPE-TL-ASADRILVLED-GR 172 (173)
T ss_pred HHHHHHHHHHhcCCCEEEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HH-HhCCEEEEEEC-CC
Confidence 99999999999999999999999999999999999999999777999999999985 34 68999999985 55
|
They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra |
| >cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-35 Score=320.07 Aligned_cols=211 Identities=24% Similarity=0.347 Sum_probs=165.4
Q ss_pred ceeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCcc
Q 000979 602 HSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP 681 (1202)
Q Consensus 602 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 681 (1202)
..++++|+++.|+.. +++.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+
T Consensus 10 ~~l~~~~l~~~~~~~----------~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~ 77 (226)
T cd03248 10 GIVKFQNVTFAYPTR----------PDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQ--PQGGQVLLDGKP 77 (226)
T ss_pred ceEEEEEEEEEeCCC----------CCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC--CCCcEEEECCCc
Confidence 358899999998521 12358999999999999999999999999999999999876 458999999986
Q ss_pred CCc---ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHc--CCCccccccccCCCCCCC
Q 000979 682 KKQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELV--ELNPLRQSLVGLPGVSGL 756 (1202)
Q Consensus 682 ~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l--~l~~~~~~~~~~~~~~~L 756 (1202)
+.. ...++.++|++|++.+++ .||+||+.+...............+..++++++.+ |+.+..+.. ++.|
T Consensus 78 ~~~~~~~~~~~~i~~~~q~~~l~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~-----~~~L 151 (226)
T cd03248 78 ISQYEHKYLHSKVSLVGQEPVLFA-RSLQDNIAYGLQSCSFECVKEAAQKAHAHSFISELASGYDTEVGEK-----GSQL 151 (226)
T ss_pred hHHcCHHHHHhhEEEEecccHHHh-hhHHHHhccccCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcC-----CCcC
Confidence 532 234567999999988776 69999998753211000000011112346777777 666554443 4579
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCCE
Q 000979 757 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQ 834 (1202)
Q Consensus 757 SgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~ 834 (1202)
|||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|+|++||+++ ++ +.+|++++|++ |+
T Consensus 152 SgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~~-~~-~~~d~i~~l~~-g~ 225 (226)
T cd03248 152 SGGQKQRVAIARALIRNPQVLILDEATSALDAESEQQVQQALYDWPE-RRTVLVIAHRLS-TV-ERADQILVLDG-GR 225 (226)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcC-CCEEEEEECCHH-HH-HhCCEEEEecC-Cc
Confidence 99999999999999999999999999999999999999999999865 689999999986 45 45999999985 55
|
Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. |
| >PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-34 Score=360.20 Aligned_cols=211 Identities=27% Similarity=0.372 Sum_probs=175.4
Q ss_pred ceeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCcc
Q 000979 602 HSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP 681 (1202)
Q Consensus 602 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 681 (1202)
..++++||+|+|+. ++.+|+|+|++++|||.++|+|+||||||||+|+|+|..+ +.+|+|.+||.+
T Consensus 333 ~~I~~~~vsf~y~~------------~~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~--p~~G~I~i~g~~ 398 (588)
T PRK13657 333 GAVEFDDVSFSYDN------------SRQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFD--PQSGRILIDGTD 398 (588)
T ss_pred CeEEEEEEEEEeCC------------CCceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcC--CCCCEEEECCEE
Confidence 46999999999952 1348999999999999999999999999999999999877 458999999987
Q ss_pred CCc---ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCC-------ccccccccCC
Q 000979 682 KKQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELN-------PLRQSLVGLP 751 (1202)
Q Consensus 682 ~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-------~~~~~~~~~~ 751 (1202)
+.. ..+++.++||+|++.+++ .|++||+.++. ++.++++ +.++++.+++. +-.|+.+|..
T Consensus 399 i~~~~~~~~r~~i~~v~Q~~~lf~-~Ti~~Ni~~~~-----~~~~d~~----i~~al~~~~l~~~i~~lp~gldt~i~~~ 468 (588)
T PRK13657 399 IRTVTRASLRRNIAVVFQDAGLFN-RSIEDNIRVGR-----PDATDEE----MRAAAERAQAHDFIERKPDGYDTVVGER 468 (588)
T ss_pred hhhCCHHHHHhheEEEecCccccc-ccHHHHHhcCC-----CCCCHHH----HHHHHHHhCHHHHHHhCcccccchhcCC
Confidence 654 456788999999998886 69999998752 1233332 44455555543 3456666654
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEec
Q 000979 752 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKR 831 (1202)
Q Consensus 752 ~~~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~ 831 (1202)
.+.||||||||++|||||+++|+||+||||||+||+.+++.+.+.|+++. +++|+|++||+++ ..+.+|++++|++
T Consensus 469 -g~~LSgGq~QRialARall~~~~iliLDEpts~LD~~t~~~i~~~l~~~~-~~~tvIiitHr~~--~~~~~D~ii~l~~ 544 (588)
T PRK13657 469 -GRQLSGGERQRLAIARALLKDPPILILDEATSALDVETEAKVKAALDELM-KGRTTFIIAHRLS--TVRNADRILVFDN 544 (588)
T ss_pred -CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh-cCCEEEEEEecHH--HHHhCCEEEEEEC
Confidence 35699999999999999999999999999999999999999999998874 5799999999985 5788999999985
Q ss_pred CCEEEEEcCC
Q 000979 832 GGQEIYVGPL 841 (1202)
Q Consensus 832 gG~~~~~G~~ 841 (1202)
|+++..|+.
T Consensus 545 -G~i~~~g~~ 553 (588)
T PRK13657 545 -GRVVESGSF 553 (588)
T ss_pred -CEEEEeCCH
Confidence 899999985
|
|
| >PRK00349 uvrA excinuclease ABC subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-33 Score=355.37 Aligned_cols=123 Identities=24% Similarity=0.307 Sum_probs=102.7
Q ss_pred CCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCcc-ccccccCCCCCCCCHHHHHHHHHHHHHhhCC---CEEEE
Q 000979 704 VTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPL-RQSLVGLPGVSGLSTEQRKRLTIAVELVANP---SIIFM 779 (1202)
Q Consensus 704 lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~-~~~~~~~~~~~~LSgGqrqRv~ia~aL~~~p---~illl 779 (1202)
+||.|++.|...+. . .....+.++.+||... .+.. ...||||||||+.||++|+.+| ++++|
T Consensus 792 ltv~E~l~~f~~~~---~------i~~~l~~L~~vgL~~l~l~~~-----~~tLSgGEkQRl~LAraL~~~p~~~~llIL 857 (943)
T PRK00349 792 MTVEEALEFFEAIP---K------IARKLQTLVDVGLGYIKLGQP-----ATTLSGGEAQRVKLAKELSKRSTGKTLYIL 857 (943)
T ss_pred CcHHHHHHHHHhch---h------hhHHHHHHHHCCCCcccccCC-----cccCCHHHHHHHHHHHHHhcCCCCCeEEEE
Confidence 78999998875432 1 1123578899999753 4443 3579999999999999999999 99999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEe-----cCCEEEEEcCCC
Q 000979 780 DEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK-----RGGQEIYVGPLG 842 (1202)
Q Consensus 780 DEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~-----~gG~~~~~G~~~ 842 (1202)
||||+|||+.....+++.|+++.++|.|||+++|++. ..+.+|+++.|. +||++++.|+++
T Consensus 858 DEPtsGLD~~~~~~L~~~L~~l~~~G~TVIiitH~~~--~i~~aD~ii~Lgp~~G~~~G~Iv~~Gt~~ 923 (943)
T PRK00349 858 DEPTTGLHFEDIRKLLEVLHRLVDKGNTVVVIEHNLD--VIKTADWIIDLGPEGGDGGGEIVATGTPE 923 (943)
T ss_pred ECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH--HHHhCCEEEEecCCcCCCCCEEEEeCCHH
Confidence 9999999999999999999999878999999999985 446899999994 479999999863
|
|
| >cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-34 Score=303.79 Aligned_cols=176 Identities=27% Similarity=0.461 Sum_probs=150.2
Q ss_pred eEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCC
Q 000979 604 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 683 (1202)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 683 (1202)
++++|+++.|+. .++.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+..
T Consensus 1 i~~~~~~~~~~~-----------~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~--~~~G~i~~~g~~~~ 67 (178)
T cd03247 1 LSINNVSFSYPE-----------QEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLK--PQQGEITLDGVPVS 67 (178)
T ss_pred CEEEEEEEEeCC-----------CCccceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCC--CCCCEEEECCEEHH
Confidence 367899888742 11348999999999999999999999999999999999876 45899999998653
Q ss_pred c--ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHH
Q 000979 684 Q--ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQR 761 (1202)
Q Consensus 684 ~--~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqr 761 (1202)
. ...++.++|++|++.+++ .|++||+ ...||||||
T Consensus 68 ~~~~~~~~~i~~~~q~~~~~~-~tv~~~i------------------------------------------~~~LS~G~~ 104 (178)
T cd03247 68 DLEKALSSLISVLNQRPYLFD-TTLRNNL------------------------------------------GRRFSGGER 104 (178)
T ss_pred HHHHHHHhhEEEEccCCeeec-ccHHHhh------------------------------------------cccCCHHHH
Confidence 2 234567899999987775 6888876 135999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCCEEEEEc
Q 000979 762 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVG 839 (1202)
Q Consensus 762 qRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G 839 (1202)
||++|||||+.+|++|+|||||+|||+.+++.+++.|+++. ++.|+|++||+++ .+ +.+|++++|++ |++++.|
T Consensus 105 qrv~laral~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~-~~~tii~~sh~~~-~~-~~~d~~~~l~~-g~i~~~~ 178 (178)
T cd03247 105 QRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVL-KDKTLIWITHHLT-GI-EHMDKILFLEN-GKIIMQG 178 (178)
T ss_pred HHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHH-HH-HhCCEEEEEEC-CEEEecC
Confidence 99999999999999999999999999999999999999985 5899999999986 34 57999999985 7888754
|
The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. |
| >TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-34 Score=312.11 Aligned_cols=195 Identities=23% Similarity=0.332 Sum_probs=160.5
Q ss_pred EEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCCcccccceEEEeecCCCCCC--CCCHHHHHHHHH
Q 000979 637 GAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSP--FVTIYESLLFSA 714 (1202)
Q Consensus 637 ~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~--~lTv~e~l~~~~ 714 (1202)
|++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+.. ..++.++|++|++.+++ .+|+.||+.+..
T Consensus 1 l~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~--~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~ 76 (223)
T TIGR03771 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIP--PAKGTVKVAGASPG--KGWRHIGYVPQRHEFAWDFPISVAHTVMSGR 76 (223)
T ss_pred CccCCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCccch--HhhCcEEEecccccccCCCCccHHHHHHhcc
Confidence 4689999999999999999999999999876 45899999998753 23567999999987643 479999998753
Q ss_pred HccCC-CCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHH
Q 000979 715 WLRLS-PEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAI 793 (1202)
Q Consensus 715 ~~~~~-~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~ 793 (1202)
..... ........++.++++++.+++.+..++.+ .+||||||||++|||+|+.+|++|+|||||+|||+.++..
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~laral~~~p~llilDEP~~~LD~~~~~~ 151 (223)
T TIGR03771 77 TGHIGWLRRPCVADFAAVRDALRRVGLTELADRPV-----GELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQEL 151 (223)
T ss_pred ccccccccCCcHHHHHHHHHHHHHhCCchhhcCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHH
Confidence 21100 00111223345788999999987666653 5799999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCCEEEEEcCCCc
Q 000979 794 VMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLGR 843 (1202)
Q Consensus 794 v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G~~~~ 843 (1202)
+.+.|++++++|+|+|++||+++ ++.+.+|+++++ + |++++.|+.++
T Consensus 152 l~~~l~~~~~~~~tvii~sH~~~-~~~~~~d~i~~l-~-G~i~~~~~~~~ 198 (223)
T TIGR03771 152 LTELFIELAGAGTAILMTTHDLA-QAMATCDRVVLL-N-GRVIADGTPQQ 198 (223)
T ss_pred HHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEE-C-CEEEeecCHHH
Confidence 99999999877999999999986 578899999998 5 79999998753
|
This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown. |
| >TIGR02868 CydC thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-35 Score=358.26 Aligned_cols=189 Identities=28% Similarity=0.424 Sum_probs=158.4
Q ss_pred CceeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCc
Q 000979 601 PHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGY 680 (1202)
Q Consensus 601 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~ 680 (1202)
...++++||+|+|+. ++++|+|+|+++++||.+||+||||||||||+|+|+|..+ +.+|+|.+||.
T Consensus 332 ~~~I~~~~vsf~Y~~------------~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~--p~~G~I~i~g~ 397 (529)
T TIGR02868 332 KPTLELRDLSFGYPG------------SPPVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLD--PLQGEVTLDGV 397 (529)
T ss_pred CceEEEEEEEEecCC------------CCceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCE
Confidence 346999999999952 1248999999999999999999999999999999999877 45899999998
Q ss_pred cCC--cccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCC-------ccccccccCC
Q 000979 681 PKK--QETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELN-------PLRQSLVGLP 751 (1202)
Q Consensus 681 ~~~--~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-------~~~~~~~~~~ 751 (1202)
+++ ...+|+.++||+|++.+++ .|++||+.++. ++.+++ .++++++..++. +-.|+.+|..
T Consensus 398 ~i~~~~~~lr~~i~~V~Q~~~lF~-~TI~eNI~~g~-----~~~~~e----~i~~al~~a~l~~~i~~lp~GldT~ige~ 467 (529)
T TIGR02868 398 SVSSLQDELRRRISVFAQDAHLFD-TTVRDNLRLGR-----PDATDE----ELWAALERVGLADWLRSLPDGLDTVLGEG 467 (529)
T ss_pred EhhhHHHHHHhheEEEccCccccc-ccHHHHHhccC-----CCCCHH----HHHHHHHHcCCHHHHHhCcccccchhccc
Confidence 765 3456788999999999886 59999999852 222333 255666666554 3457888875
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCC
Q 000979 752 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQP 815 (1202)
Q Consensus 752 ~~~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~ 815 (1202)
| ..||||||||++|||||+++|+||+||||||+||+++++.+.+.|+++ .+++|+|+++|++
T Consensus 468 G-~~LSGGQrQRiaiARall~~~~iliLDE~TSaLD~~te~~I~~~l~~~-~~~~TvIiItHrl 529 (529)
T TIGR02868 468 G-ARLSGGERQRLALARALLADAPILLLDEPTEHLDAGTESELLEDLLAA-LSGKTVVVITHHL 529 (529)
T ss_pred c-CcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHh-cCCCEEEEEecCC
Confidence 5 469999999999999999999999999999999999999999999976 4589999999974
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. |
| >cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1) | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-34 Score=307.96 Aligned_cols=200 Identities=24% Similarity=0.290 Sum_probs=161.4
Q ss_pred ceeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCcc
Q 000979 602 HSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP 681 (1202)
Q Consensus 602 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 681 (1202)
..++++|++++|+. .++.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+
T Consensus 5 ~~l~~~~l~~~~~~-----------~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~ 71 (207)
T cd03369 5 GEIEVENLSVRYAP-----------DLPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLE--AEEGKIEIDGID 71 (207)
T ss_pred CeEEEEEEEEEeCC-----------CCcccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccC--CCCCeEEECCEE
Confidence 35889999998742 11358999999999999999999999999999999999876 458999999987
Q ss_pred CCc---ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCH
Q 000979 682 KKQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLST 758 (1202)
Q Consensus 682 ~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSg 758 (1202)
... ...++.++|++|++.+++ .|++||+.+.. ....+ .+.+.++ + +. ..+.|||
T Consensus 72 ~~~~~~~~~~~~i~~v~q~~~~~~-~tv~~~l~~~~------~~~~~----~~~~~l~---~----~~-----~~~~LS~ 128 (207)
T cd03369 72 ISTIPLEDLRSSLTIIPQDPTLFS-GTIRSNLDPFD------EYSDE----EIYGALR---V----SE-----GGLNLSQ 128 (207)
T ss_pred hHHCCHHHHHhhEEEEecCCcccC-ccHHHHhcccC------CCCHH----HHHHHhh---c----cC-----CCCcCCH
Confidence 532 234567999999998776 59999996521 11111 1233333 2 22 2457999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCCEEEEE
Q 000979 759 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYV 838 (1202)
Q Consensus 759 GqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~ 838 (1202)
|||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++. +|+|+|++||+++ .+ ..+|++++|++ |+++..
T Consensus 129 G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~~~tiii~th~~~-~~-~~~d~v~~l~~-g~i~~~ 204 (207)
T cd03369 129 GQRQLLCLARALLKRPRVLVLDEATASIDYATDALIQKTIREEF-TNSTILTIAHRLR-TI-IDYDKILVMDA-GEVKEY 204 (207)
T ss_pred HHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhc-CCCEEEEEeCCHH-HH-hhCCEEEEEEC-CEEEec
Confidence 99999999999999999999999999999999999999999984 5899999999986 34 45999999985 799888
Q ss_pred cCC
Q 000979 839 GPL 841 (1202)
Q Consensus 839 G~~ 841 (1202)
|++
T Consensus 205 g~~ 207 (207)
T cd03369 205 DHP 207 (207)
T ss_pred CCC
Confidence 763
|
NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. |
| >COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-35 Score=281.07 Aligned_cols=195 Identities=22% Similarity=0.350 Sum_probs=166.8
Q ss_pred CceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCCc---ccccceEEEeecCCCCCCC
Q 000979 627 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ---ETFARISGYCEQNDIHSPF 703 (1202)
Q Consensus 627 ~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~---~~~~~~~~~v~q~~~~~~~ 703 (1202)
++.++|+++||++++||..+|.||||||||||+|+++.+.+ +.+|.+++.|++++. +.+|+.++||.|.+.+++
T Consensus 14 ~~a~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lis--p~~G~l~f~Ge~vs~~~pea~Rq~VsY~~Q~paLfg- 90 (223)
T COG4619 14 GDAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLIS--PTSGTLLFEGEDVSTLKPEAYRQQVSYCAQTPALFG- 90 (223)
T ss_pred CCCeeecceeeeecCCceEEEeCCCCccHHHHHHHHHhccC--CCCceEEEcCccccccChHHHHHHHHHHHcCccccc-
Confidence 45679999999999999999999999999999999999877 568999999998754 568889999999999998
Q ss_pred CCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCC
Q 000979 704 VTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPT 783 (1202)
Q Consensus 704 lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~illlDEPt 783 (1202)
-||++|+.|...+|.... + +....+.++.+++.+..-+. .+..||||||||++|+|-|..-|+||+|||||
T Consensus 91 ~tVeDNlifP~~~r~rr~-d----r~aa~~llar~~l~~~~L~k----~it~lSGGE~QriAliR~Lq~~P~ILLLDE~T 161 (223)
T COG4619 91 DTVEDNLIFPWQIRNRRP-D----RAAALDLLARFALPDSILTK----NITELSGGEKQRIALIRNLQFMPKILLLDEIT 161 (223)
T ss_pred cchhhccccchHHhccCC-C----hHHHHHHHHHcCCchhhhcc----hhhhccchHHHHHHHHHHhhcCCceEEecCch
Confidence 599999999887775322 1 22356788888887643222 24579999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHH-hCCCEEEEEecCCCHHHHHhcceEEEEecCCEE
Q 000979 784 SGLDARAAAIVMRTVRNTV-DTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQE 835 (1202)
Q Consensus 784 sgLD~~~~~~v~~~l~~~~-~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~ 835 (1202)
|+||+.+++.|-++|.++. ++.+.++.+||++. +..+.+||++-+.. |+.
T Consensus 162 sALD~~nkr~ie~mi~~~v~~q~vAv~WiTHd~d-qa~rha~k~itl~~-G~~ 212 (223)
T COG4619 162 SALDESNKRNIEEMIHRYVREQNVAVLWITHDKD-QAIRHADKVITLQP-GHA 212 (223)
T ss_pred hhcChhhHHHHHHHHHHHhhhhceEEEEEecChH-HHhhhhheEEEecc-Ccc
Confidence 9999999999999999986 56899999999987 56789999999985 543
|
|
| >COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-33 Score=286.35 Aligned_cols=229 Identities=25% Similarity=0.297 Sum_probs=192.8
Q ss_pred eeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccC
Q 000979 603 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 682 (1202)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 682 (1202)
.++.+|+++++. +++.||++||++|++||+.+||||||||||||.++|+|.+.+..++|+|.++|.++
T Consensus 3 ~L~I~dLhv~v~------------~~keILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~I~~~GedI 70 (251)
T COG0396 3 MLEIKDLHVEVE------------GKKEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDI 70 (251)
T ss_pred eeEEeeeEEEec------------CchhhhcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCCCceEecceEEECCccc
Confidence 478899998874 22579999999999999999999999999999999999998888899999999987
Q ss_pred Cc----ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCCCCCCCC
Q 000979 683 KQ----ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP-LRQSLVGLPGVSGLS 757 (1202)
Q Consensus 683 ~~----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~-~~~~~~~~~~~~~LS 757 (1202)
.. +..|..+...+|.|.-+|..|+.+.|..+...+.....-..+-...+++.++.+++.+ ..++.+. .++|
T Consensus 71 ~~l~~~ERAr~GifLafQ~P~ei~GV~~~~fLr~a~n~~~~~~~~~~~~~~~~~e~~~~l~~~~~~l~R~vN----~GFS 146 (251)
T COG0396 71 LELSPDERARAGIFLAFQYPVEIPGVTNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDEEFLERYVN----EGFS 146 (251)
T ss_pred ccCCHhHHHhcCCEEeecCCccCCCeeHHHHHHHHHHhhhccccccHHHHHHHHHHHHHcCCCHHHhhcccC----CCcC
Confidence 54 2345667889999999999999999987765432211112234456788999999987 5555553 4799
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhc--ceEEEEecCCEE
Q 000979 758 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAF--DELFLMKRGGQE 835 (1202)
Q Consensus 758 gGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~--d~v~~l~~gG~~ 835 (1202)
||||||..|+..++.+|++.+||||-||||..+-+.|-+.++++++.|++++++||.. .+.++. |++-+|.+ |++
T Consensus 147 GGEkKR~EilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr~~~~~~liITHy~--rll~~i~pD~vhvl~~-GrI 223 (251)
T COG0396 147 GGEKKRNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQ--RLLDYIKPDKVHVLYD-GRI 223 (251)
T ss_pred cchHHHHHHHHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHHhcCCCeEEEEecHH--HHHhhcCCCEEEEEEC-CEE
Confidence 9999999999999999999999999999999999999999999998999999999985 578887 99999995 899
Q ss_pred EEEcCCCccchhHHHHHhhC
Q 000979 836 IYVGPLGRHSCHLISYFEAI 855 (1202)
Q Consensus 836 ~~~G~~~~~~~~~~~~f~~~ 855 (1202)
+..|.+ ++..+++..
T Consensus 224 v~sG~~-----el~~~le~~ 238 (251)
T COG0396 224 VKSGDP-----ELAEELEEK 238 (251)
T ss_pred EecCCH-----HHHHHHHHh
Confidence 999996 466666665
|
|
| >PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-34 Score=353.72 Aligned_cols=214 Identities=22% Similarity=0.363 Sum_probs=175.9
Q ss_pred CceeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCc
Q 000979 601 PHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGY 680 (1202)
Q Consensus 601 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~ 680 (1202)
+..++++|++|+|+. +++.+|+|+|+++++||.++|+||||||||||+++|+|..+ +.+|+|.+||.
T Consensus 311 ~~~I~~~~v~~~y~~-----------~~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~--p~~G~i~~~g~ 377 (569)
T PRK10789 311 RGELDVNIRQFTYPQ-----------TDHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFD--VSEGDIRFHDI 377 (569)
T ss_pred CCcEEEEEEEEECCC-----------CCCccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhcccC--CCCCEEEECCE
Confidence 346899999999852 12358999999999999999999999999999999999876 45899999998
Q ss_pred cCCc---ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCC-------ccccccccC
Q 000979 681 PKKQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELN-------PLRQSLVGL 750 (1202)
Q Consensus 681 ~~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-------~~~~~~~~~ 750 (1202)
+... ..+++.++||+|++.+++ .|++||+.++. ++.++++ ++++++..++. +..|+.+|.
T Consensus 378 ~~~~~~~~~~~~~i~~v~q~~~lf~-~ti~~Ni~~~~-----~~~~~~~----~~~~~~~~~l~~~i~~lp~gl~t~~~~ 447 (569)
T PRK10789 378 PLTKLQLDSWRSRLAVVSQTPFLFS-DTVANNIALGR-----PDATQQE----IEHVARLASVHDDILRLPQGYDTEVGE 447 (569)
T ss_pred EHhhCCHHHHHhheEEEccCCeecc-ccHHHHHhcCC-----CCCCHHH----HHHHHHHcCCHHHHHhCcCcccceecC
Confidence 7643 356788999999998886 59999998742 1223222 34455554443 344666665
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEe
Q 000979 751 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 830 (1202)
Q Consensus 751 ~~~~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~ 830 (1202)
.+ ..||||||||++|||||+++|++|+||||||+||+.+++.+.+.|+++. +|+|+|++||+++ ..+.+|++++|+
T Consensus 448 ~g-~~LSgGq~qRi~lARall~~~~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tii~itH~~~--~~~~~d~i~~l~ 523 (569)
T PRK10789 448 RG-VMLSGGQKQRISIARALLLNAEILILDDALSAVDGRTEHQILHNLRQWG-EGRTVIISAHRLS--ALTEASEILVMQ 523 (569)
T ss_pred CC-CcCCHHHHHHHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHHh-CCCEEEEEecchh--HHHcCCEEEEEe
Confidence 43 5699999999999999999999999999999999999999999999874 6899999999985 467799999998
Q ss_pred cCCEEEEEcCCC
Q 000979 831 RGGQEIYVGPLG 842 (1202)
Q Consensus 831 ~gG~~~~~G~~~ 842 (1202)
+ |+++..|+.+
T Consensus 524 ~-G~i~~~g~~~ 534 (569)
T PRK10789 524 H-GHIAQRGNHD 534 (569)
T ss_pred C-CEEEEecCHH
Confidence 5 8999999853
|
|
| >TIGR01192 chvA glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-34 Score=353.32 Aligned_cols=212 Identities=25% Similarity=0.297 Sum_probs=172.5
Q ss_pred ceeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCcc
Q 000979 602 HSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP 681 (1202)
Q Consensus 602 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 681 (1202)
..++++||+|+|+. ++++|+|+|+++++||.++|+||||||||||+++|+|..+ +.+|+|.+||.+
T Consensus 333 ~~i~~~~v~~~y~~------------~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~--~~~G~i~~~g~~ 398 (585)
T TIGR01192 333 GAVEFRHITFEFAN------------SSQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYD--PTVGQILIDGID 398 (585)
T ss_pred CeEEEEEEEEECCC------------CCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCC--CCCCEEEECCEE
Confidence 46999999999852 1247999999999999999999999999999999999876 458999999987
Q ss_pred CCc---ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCC-------CccccccccCC
Q 000979 682 KKQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVEL-------NPLRQSLVGLP 751 (1202)
Q Consensus 682 ~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l-------~~~~~~~~~~~ 751 (1202)
... ..+++.++||+|++.+++ .|++||+.++. +..++++ +.+.++..++ .+..|+.+|..
T Consensus 399 ~~~~~~~~~~~~i~~v~q~~~lf~-~ti~~Ni~~~~-----~~~~~~~----~~~a~~~~~~~~~i~~l~~g~~t~~~~~ 468 (585)
T TIGR01192 399 INTVTRESLRKSIATVFQDAGLFN-RSIRENIRLGR-----EGATDEE----VYEAAKAAAAHDFILKRSNGYDTLVGER 468 (585)
T ss_pred hhhCCHHHHHhheEEEccCCccCc-ccHHHHHhcCC-----CCCCHHH----HHHHHHHhCcHHHHHhccccccchhcCC
Confidence 643 346788999999998886 79999998752 1223332 2233333332 23345666654
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEec
Q 000979 752 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKR 831 (1202)
Q Consensus 752 ~~~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~ 831 (1202)
...||||||||++|||||+++|++|+|||||||||+.+++.+.+.|+++. +++|+|++||+++ ..+.+|++++|++
T Consensus 469 -~~~LSgGq~qrl~lARall~~p~ililDEpts~LD~~~~~~i~~~l~~~~-~~~tvI~isH~~~--~~~~~d~i~~l~~ 544 (585)
T TIGR01192 469 -GNRLSGGERQRLAIARAILKNAPILVLDEATSALDVETEARVKNAIDALR-KNRTTFIIAHRLS--TVRNADLVLFLDQ 544 (585)
T ss_pred -CCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHh-CCCEEEEEEcChH--HHHcCCEEEEEEC
Confidence 35699999999999999999999999999999999999999999999874 5899999999985 4577999999985
Q ss_pred CCEEEEEcCCC
Q 000979 832 GGQEIYVGPLG 842 (1202)
Q Consensus 832 gG~~~~~G~~~ 842 (1202)
|+++..|+.+
T Consensus 545 -G~i~~~g~~~ 554 (585)
T TIGR01192 545 -GRLIEKGSFQ 554 (585)
T ss_pred -CEEEEECCHH
Confidence 8999999853
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related. |
| >COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-34 Score=320.79 Aligned_cols=216 Identities=23% Similarity=0.332 Sum_probs=188.7
Q ss_pred eeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccC
Q 000979 603 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 682 (1202)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 682 (1202)
.+++++++..++ ...+++|||+++++||+.||+|.||||||||+++|.|... |.+|+|.++|++.
T Consensus 4 ~l~~~~itK~f~-------------~~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~--P~~GeI~v~G~~v 68 (501)
T COG3845 4 ALEMRGITKRFP-------------GVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQ--PDSGEIRVDGKEV 68 (501)
T ss_pred eEEEeccEEEcC-------------CEEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCccc--CCcceEEECCEEe
Confidence 477888887764 4678999999999999999999999999999999999887 5699999999976
Q ss_pred Cc----ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCH
Q 000979 683 KQ----ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLST 758 (1202)
Q Consensus 683 ~~----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSg 758 (1202)
.- ...+..||+|.|+..+.|++||.||+..+..-......+....+++++++.+.+|+.-..|..+ ..||-
T Consensus 69 ~~~sP~dA~~~GIGMVhQHF~Lv~~lTV~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl~vdp~~~V-----~dLsV 143 (501)
T COG3845 69 RIKSPRDAIRLGIGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPVDPDAKV-----ADLSV 143 (501)
T ss_pred ccCCHHHHHHcCCcEEeeccccccccchhhhhhhcCccccccccCHHHHHHHHHHHHHHhCCCCCcccee-----ecCCc
Confidence 43 2345679999999999999999999998764322223455566778999999999987777775 46999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCCEEEEE
Q 000979 759 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYV 838 (1202)
Q Consensus 759 GqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~ 838 (1202)
||||||.|-++|.++|++|+|||||+-|-|...+.++++|++++++|+|||++||... |+.+.|||+.+|.+ |+++-.
T Consensus 144 G~qQRVEIlKaLyr~a~iLILDEPTaVLTP~E~~~lf~~l~~l~~~G~tIi~ITHKL~-Ev~~iaDrvTVLR~-Gkvvgt 221 (501)
T COG3845 144 GEQQRVEILKALYRGARLLILDEPTAVLTPQEADELFEILRRLAAEGKTIIFITHKLK-EVMAIADRVTVLRR-GKVVGT 221 (501)
T ss_pred chhHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHH-HHHHhhCeeEEEeC-CeEEee
Confidence 9999999999999999999999999999999999999999999999999999999997 79999999999985 788776
Q ss_pred cC
Q 000979 839 GP 840 (1202)
Q Consensus 839 G~ 840 (1202)
-+
T Consensus 222 ~~ 223 (501)
T COG3845 222 VD 223 (501)
T ss_pred ec
Confidence 66
|
|
| >cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-34 Score=294.56 Aligned_cols=165 Identities=27% Similarity=0.412 Sum_probs=142.8
Q ss_pred eEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCC
Q 000979 604 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 683 (1202)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 683 (1202)
++++|++++|+ +++.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.
T Consensus 1 i~~~~~~~~~~------------~~~~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~~~--- 63 (166)
T cd03223 1 IELENLSLATP------------DGRVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWP--WGSGRIGMPEG--- 63 (166)
T ss_pred CEEEEEEEEcC------------CCCeeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECCC---
Confidence 35788888873 12358999999999999999999999999999999999876 45899999873
Q ss_pred cccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHH
Q 000979 684 QETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKR 763 (1202)
Q Consensus 684 ~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqR 763 (1202)
+.++|++|++.++ ..|++||+.+. . .+.||||||||
T Consensus 64 -----~~i~~~~q~~~~~-~~tv~~nl~~~---------------------------------~-----~~~LS~G~~~r 99 (166)
T cd03223 64 -----EDLLFLPQRPYLP-LGTLREQLIYP---------------------------------W-----DDVLSGGEQQR 99 (166)
T ss_pred -----ceEEEECCCCccc-cccHHHHhhcc---------------------------------C-----CCCCCHHHHHH
Confidence 5689999998764 57999998642 0 24699999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCCE
Q 000979 764 LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQ 834 (1202)
Q Consensus 764 v~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~ 834 (1202)
++|||||+.+|++++|||||+|||+.++..+.+.|+++ ++|+|++||+++ ..+.+|++++|+++|.
T Consensus 100 v~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~---~~tiiivsh~~~--~~~~~d~i~~l~~~~~ 165 (166)
T cd03223 100 LAFARLLLHKPKFVFLDEATSALDEESEDRLYQLLKEL---GITVISVGHRPS--LWKFHDRVLDLDGEGG 165 (166)
T ss_pred HHHHHHHHcCCCEEEEECCccccCHHHHHHHHHHHHHh---CCEEEEEeCChh--HHhhCCEEEEEcCCCC
Confidence 99999999999999999999999999999999999876 589999999985 4579999999998774
|
The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt |
| >cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-34 Score=302.05 Aligned_cols=175 Identities=29% Similarity=0.444 Sum_probs=145.5
Q ss_pred EeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCCc-
Q 000979 606 FDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ- 684 (1202)
Q Consensus 606 ~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~- 684 (1202)
++|+++.|+ ++.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+...
T Consensus 2 ~~~l~~~~~-------------~~~~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~--~~~G~v~~~g~~~~~~ 66 (180)
T cd03214 2 VENLSVGYG-------------GRTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLK--PSSGEILLDGKDLASL 66 (180)
T ss_pred eeEEEEEEC-------------CeeeEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEECCcC
Confidence 578888773 2358999999999999999999999999999999999876 458999999987542
Q ss_pred --ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHH
Q 000979 685 --ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRK 762 (1202)
Q Consensus 685 --~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrq 762 (1202)
..+++.++|++| +++.+++.+..++. ++.|||||||
T Consensus 67 ~~~~~~~~i~~~~q-------------------------------------~l~~~gl~~~~~~~-----~~~LS~G~~q 104 (180)
T cd03214 67 SPKELARKIAYVPQ-------------------------------------ALELLGLAHLADRP-----FNELSGGERQ 104 (180)
T ss_pred CHHHHHHHHhHHHH-------------------------------------HHHHcCCHhHhcCC-----cccCCHHHHH
Confidence 122344666666 44556665544443 3579999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhcceEEEEecCCEEEEEc
Q 000979 763 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVG 839 (1202)
Q Consensus 763 Rv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G 839 (1202)
|++|||||+.+|++++|||||+|||+.++..+.+.|++++++ |+|+|+++|+++ ++.+.+|++++|.+ |++++.|
T Consensus 105 rl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~-~~~~~~d~~~~l~~-g~i~~~~ 180 (180)
T cd03214 105 RVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLN-LAARYADRVILLKD-GRIVAQG 180 (180)
T ss_pred HHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEecC
Confidence 999999999999999999999999999999999999998766 899999999986 56789999999985 7887654
|
Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. |
| >COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-34 Score=296.30 Aligned_cols=217 Identities=23% Similarity=0.345 Sum_probs=180.7
Q ss_pred ceeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCcc
Q 000979 602 HSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP 681 (1202)
Q Consensus 602 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 681 (1202)
.-+.++||++.+ ++++||+|+|++|+|||-.+|+|||||||||||++++|...+. +|.+.+.|++
T Consensus 30 ~li~l~~v~v~r-------------~gk~iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~ps--sg~~~~~G~~ 94 (257)
T COG1119 30 PLIELKNVSVRR-------------NGKKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPS--SGDVTLLGRR 94 (257)
T ss_pred ceEEecceEEEE-------------CCEeeccccceeecCCCcEEEECCCCCCHHHHHHHHhcccCCC--CCceeeeeee
Confidence 458999999876 3578999999999999999999999999999999999987743 8899999987
Q ss_pred CCc----ccccceEEEeecC--CCCCCCCCHHHHHHHH--HHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCC
Q 000979 682 KKQ----ETFARISGYCEQN--DIHSPFVTIYESLLFS--AWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGV 753 (1202)
Q Consensus 682 ~~~----~~~~~~~~~v~q~--~~~~~~lTv~e~l~~~--~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~ 753 (1202)
... .+.|+.||+|.-+ ....+..+|+|-+.-+ +.+........++..+++..+++.+|+.+.+|+..
T Consensus 95 ~G~~~~~~elrk~IG~vS~~L~~~~~~~~~v~dvVlSg~~~siG~y~~~~~~~~~~~a~~lle~~g~~~la~r~~----- 169 (257)
T COG1119 95 FGKGETIFELRKRIGLVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGAKHLADRPF----- 169 (257)
T ss_pred ccCCcchHHHHHHhCccCHHHHhhcccccccceeeeecccccccccccCCCHHHHHHHHHHHHHcchhhhccCch-----
Confidence 543 3568899999753 3344567888876532 22333331223455677899999999999998875
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC--CCEEEEEecCCCHHHHHhcceEEEEec
Q 000979 754 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT--GRTVVCTIHQPSIDIFEAFDELFLMKR 831 (1202)
Q Consensus 754 ~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~--g~tvi~~~H~~~~~~~~~~d~v~~l~~ 831 (1202)
..||-|||||+-|||||+++|++|+||||++|||...+..+.+.|.+++.. +.++|+|||+++ ++-..+++++++++
T Consensus 170 ~~LS~Ge~rrvLiaRALv~~P~LLiLDEP~~GLDl~~re~ll~~l~~~~~~~~~~~ll~VtHh~e-Ei~~~~th~lll~~ 248 (257)
T COG1119 170 GSLSQGEQRRVLIARALVKDPELLILDEPAQGLDLIAREQLLNRLEELAASPGAPALLFVTHHAE-EIPPCFTHRLLLKE 248 (257)
T ss_pred hhcCHhHHHHHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHhcCCCCceEEEEEcchh-hcccccceEEEeeC
Confidence 469999999999999999999999999999999999999999999999865 789999999987 78889999999985
Q ss_pred CCEEEEEcC
Q 000979 832 GGQEIYVGP 840 (1202)
Q Consensus 832 gG~~~~~G~ 840 (1202)
|++++.|.
T Consensus 249 -g~v~~~g~ 256 (257)
T COG1119 249 -GEVVAQGK 256 (257)
T ss_pred -Cceeeccc
Confidence 89999874
|
|
| >PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-34 Score=349.71 Aligned_cols=206 Identities=17% Similarity=0.186 Sum_probs=172.6
Q ss_pred eEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCC
Q 000979 604 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 683 (1202)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 683 (1202)
++++|++++|+ ++.+|+|+||++++||+++|+||||||||||+|+|+|... +.+|+|.++|.+..
T Consensus 4 l~~~~l~~~~~-------------~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~--p~~G~i~~~~~~~~ 68 (490)
T PRK10938 4 LQISQGTFRLS-------------DTKTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELP--LLSGERQSQFSHIT 68 (490)
T ss_pred EEEEeEEEEcC-------------CeeecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCC--CCCceEEECCcccc
Confidence 78899999874 2348999999999999999999999999999999999876 45799999887643
Q ss_pred c---ccccceEEEeecCCCC--C------CCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCC
Q 000979 684 Q---ETFARISGYCEQNDIH--S------PFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPG 752 (1202)
Q Consensus 684 ~---~~~~~~~~~v~q~~~~--~------~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~ 752 (1202)
. ...++.++|++|++.. + ..+|++|++.+. .+.+++++++++.+++.+..++.+
T Consensus 69 ~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~l~~~~l~~~~~~~~---- 133 (490)
T PRK10938 69 RLSFEQLQKLVSDEWQRNNTDMLSPGEDDTGRTTAEIIQDE-----------VKDPARCEQLAQQFGITALLDRRF---- 133 (490)
T ss_pred cCCHHHHHHHhceeccCcchhhcccchhhccccHHHhcccc-----------hhHHHHHHHHHHHcCCHhhhhCCc----
Confidence 2 2234568999998643 1 146888876532 112345789999999988777654
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecC
Q 000979 753 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 832 (1202)
Q Consensus 753 ~~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~g 832 (1202)
..||||||||++||+||+.+|++|+|||||+|||+.++..+.+.|++++++|.|||++||+++ .+.+.||++++|++
T Consensus 134 -~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tvii~tH~~~-~~~~~~d~v~~l~~- 210 (490)
T PRK10938 134 -KYLSTGETRKTLLCQALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQSGITLVLVLNRFD-EIPDFVQFAGVLAD- 210 (490)
T ss_pred -ccCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCCHH-HHHhhCCEEEEEEC-
Confidence 579999999999999999999999999999999999999999999999877999999999986 57889999999985
Q ss_pred CEEEEEcCCC
Q 000979 833 GQEIYVGPLG 842 (1202)
Q Consensus 833 G~~~~~G~~~ 842 (1202)
|+++..|+++
T Consensus 211 G~i~~~~~~~ 220 (490)
T PRK10938 211 CTLAETGERE 220 (490)
T ss_pred CEEEEeCCHH
Confidence 8999999864
|
|
| >cd03288 ABCC_SUR2 The SUR domain 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-34 Score=320.35 Aligned_cols=212 Identities=22% Similarity=0.299 Sum_probs=165.4
Q ss_pred ceeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCcc
Q 000979 602 HSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP 681 (1202)
Q Consensus 602 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 681 (1202)
..++++|++++|+. .++.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+
T Consensus 18 ~~i~~~~l~~~~~~-----------~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~i~g~~ 84 (257)
T cd03288 18 GEIKIHDLCVRYEN-----------NLKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVD--IFDGKIVIDGID 84 (257)
T ss_pred ceEEEEEEEEEeCC-----------CCCcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccC--CCCCeEEECCEE
Confidence 46899999998842 12358999999999999999999999999999999999876 458999999987
Q ss_pred CCc---ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccc-------cccccCC
Q 000979 682 KKQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLR-------QSLVGLP 751 (1202)
Q Consensus 682 ~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~-------~~~~~~~ 751 (1202)
+.. ...++.++|++|++.+++ .|++||+.... ....+ .+.++++..++.+.. ++..+.
T Consensus 85 i~~~~~~~~~~~i~~v~q~~~l~~-~tv~~nl~~~~------~~~~~----~~~~~l~~~~l~~~~~~~~~~l~~~~~~- 152 (257)
T cd03288 85 ISKLPLHTLRSRLSIILQDPILFS-GSIRFNLDPEC------KCTDD----RLWEALEIAQLKNMVKSLPGGLDAVVTE- 152 (257)
T ss_pred hhhCCHHHHhhhEEEECCCCcccc-cHHHHhcCcCC------CCCHH----HHHHHHHHhCcHHHHhhcccccCcEecc-
Confidence 643 234677999999998776 59999985321 11111 122333333332211 111211
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEec
Q 000979 752 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKR 831 (1202)
Q Consensus 752 ~~~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~ 831 (1202)
..+.||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++. ++.|+|++||+++ .+. .+||+++|++
T Consensus 153 ~~~~LS~G~~qrl~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~-~~~tiii~sh~~~-~~~-~~dri~~l~~ 229 (257)
T cd03288 153 GGENFSVGQRQLFCLARAFVRKSSILIMDEATASIDMATENILQKVVMTAF-ADRTVVTIAHRVS-TIL-DADLVLVLSR 229 (257)
T ss_pred CCCcCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHhc-CCCEEEEEecChH-HHH-hCCEEEEEEC
Confidence 245799999999999999999999999999999999999999999999874 5899999999987 354 4999999985
Q ss_pred CCEEEEEcCCC
Q 000979 832 GGQEIYVGPLG 842 (1202)
Q Consensus 832 gG~~~~~G~~~ 842 (1202)
|+++..|+++
T Consensus 230 -G~i~~~g~~~ 239 (257)
T cd03288 230 -GILVECDTPE 239 (257)
T ss_pred -CEEEEeCCHH
Confidence 8999999864
|
The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. |
| >TIGR02857 CydD thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-34 Score=355.48 Aligned_cols=201 Identities=29% Similarity=0.448 Sum_probs=167.7
Q ss_pred ceeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCcc
Q 000979 602 HSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP 681 (1202)
Q Consensus 602 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 681 (1202)
..++++||+|+|+. .++++|+|+|++++|||.+||+||||||||||+|+|+|..+ +.+|+|.+||.+
T Consensus 319 ~~i~~~~v~f~y~~-----------~~~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~--~~~G~I~~~g~~ 385 (529)
T TIGR02857 319 PSLEFSGLSVAYPG-----------RRAPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVD--PTEGSIAVNGVP 385 (529)
T ss_pred CeEEEEEEEEECCC-----------CCcccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCEe
Confidence 46999999999952 12358999999999999999999999999999999999877 458999999998
Q ss_pred CCc---ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCc-------cccccccCC
Q 000979 682 KKQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP-------LRQSLVGLP 751 (1202)
Q Consensus 682 ~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~-------~~~~~~~~~ 751 (1202)
+++ ..+++.++||+|++.+++ .|++||+.++. +..+++ .++++++..++.+ -.|+.+|..
T Consensus 386 i~~~~~~~lr~~i~~v~Q~~~lf~-~ti~~Ni~~~~-----~~~~~~----~i~~a~~~~~l~~~i~~lp~Gldt~v~e~ 455 (529)
T TIGR02857 386 LADADADSWRDQIAWVPQHPFLFA-GTIAENIRLAR-----PDASDA----EIRRALERAGLDEFVAALPQGLDTLIGEG 455 (529)
T ss_pred hhhCCHHHHHhheEEEcCCCcccC-cCHHHHHhccC-----CCCCHH----HHHHHHHHcCcHHHHHhCcccccchhccc
Confidence 653 456788999999999886 69999998752 122222 2556666666543 346777664
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEE
Q 000979 752 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLM 829 (1202)
Q Consensus 752 ~~~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l 829 (1202)
+ ..||||||||++|||||+++|++++||||||+||+.+++.+.+.|+++. +++|+|++||+++ ..+.+|++++|
T Consensus 456 g-~~LSgGq~qri~laRal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~--~~~~~d~i~~l 529 (529)
T TIGR02857 456 G-AGLSGGQAQRLALARAFLRDAPLLLLDEPTAHLDAETEALVTEALRALA-QGRTVLLVTHRLA--LAERADRIVVL 529 (529)
T ss_pred c-ccCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHhc-CCCEEEEEecCHH--HHHhCCEEEeC
Confidence 4 4699999999999999999999999999999999999999999999874 6899999999985 46789999875
|
Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD |
| >cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-33 Score=290.37 Aligned_cols=158 Identities=27% Similarity=0.413 Sum_probs=137.9
Q ss_pred eEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCC
Q 000979 604 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 683 (1202)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 683 (1202)
++++|+++.|+ ++++|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+..
T Consensus 1 l~~~~l~~~~~-------------~~~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~--~~~G~v~~~g~~~~ 65 (163)
T cd03216 1 LELRGITKRFG-------------GVKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYK--PDSGEILVDGKEVS 65 (163)
T ss_pred CEEEEEEEEEC-------------CeEEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEECCEECC
Confidence 36789998874 2358999999999999999999999999999999999876 45899999998754
Q ss_pred cc----cccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHH
Q 000979 684 QE----TFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTE 759 (1202)
Q Consensus 684 ~~----~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgG 759 (1202)
.. ..++.++|++| ||||
T Consensus 66 ~~~~~~~~~~~i~~~~q-----------------------------------------------------------LS~G 86 (163)
T cd03216 66 FASPRDARRAGIAMVYQ-----------------------------------------------------------LSVG 86 (163)
T ss_pred cCCHHHHHhcCeEEEEe-----------------------------------------------------------cCHH
Confidence 31 13445777776 9999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCCEEEE
Q 000979 760 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIY 837 (1202)
Q Consensus 760 qrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~ 837 (1202)
||||++|||||+.+|++|+|||||+|||+.+++.+.+.|++++++|.|+|+++|++. ++.+.+|++++|.+ |++++
T Consensus 87 ~~qrl~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~-~~~~~~d~~~~l~~-g~i~~ 162 (163)
T cd03216 87 ERQMVEIARALARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLD-EVFEIADRVTVLRD-GRVVG 162 (163)
T ss_pred HHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEe
Confidence 999999999999999999999999999999999999999999777999999999975 57788999999985 78764
|
The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. |
| >PRK13541 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-33 Score=299.41 Aligned_cols=191 Identities=19% Similarity=0.287 Sum_probs=157.2
Q ss_pred eEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCC
Q 000979 604 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 683 (1202)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 683 (1202)
++++|++++|+ ++.+++ +||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.
T Consensus 2 l~~~~l~~~~~-------------~~~l~~-vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~i~ 65 (195)
T PRK13541 2 LSLHQLQFNIE-------------QKNLFD-LSITFLPSAITYIKGANGCGKSSLLRMIAGIMQ--PSSGNIYYKNCNIN 65 (195)
T ss_pred eEEEEeeEEEC-------------CcEEEE-EEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCcccC
Confidence 57889998873 123555 999999999999999999999999999999876 45899999998764
Q ss_pred cccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHH
Q 000979 684 QETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKR 763 (1202)
Q Consensus 684 ~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqR 763 (1202)
... ++.++|++|++.+++.+||+||+.+..... . ..+.++++++.+++.+..++. .+.||||||||
T Consensus 66 ~~~-~~~~~~~~~~~~~~~~~tv~~~l~~~~~~~---~-----~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~~r 131 (195)
T PRK13541 66 NIA-KPYCTYIGHNLGLKLEMTVFENLKFWSEIY---N-----SAETLYAAIHYFKLHDLLDEK-----CYSLSSGMQKI 131 (195)
T ss_pred hhh-hhhEEeccCCcCCCccCCHHHHHHHHHHhc---c-----cHHHHHHHHHHcCCHhhhccC-----hhhCCHHHHHH
Confidence 322 345899999988888899999998764322 1 123467888999987766654 35799999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceE
Q 000979 764 LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDEL 826 (1202)
Q Consensus 764 v~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v 826 (1202)
++|||||+.+|++|+|||||+|||+.++..+.+.|++..++|+|+|+++|+++ ..+.+|.+
T Consensus 132 l~la~al~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~--~i~~~~~~ 192 (195)
T PRK13541 132 VAIARLIACQSDLWLLDEVETNLSKENRDLLNNLIVMKANSGGIVLLSSHLES--SIKSAQIL 192 (195)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCcc--ccchhhee
Confidence 99999999999999999999999999999999999877677899999999986 34445654
|
|
| >COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-34 Score=281.67 Aligned_cols=216 Identities=25% Similarity=0.338 Sum_probs=182.9
Q ss_pred eeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcC-cc
Q 000979 603 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISG-YP 681 (1202)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g-~~ 681 (1202)
.++.+||+.+. ++..+|+|+||++.|||+-+|+|||||||||++++|+|... +..|++.++| .+
T Consensus 5 iL~~~~vsVsF-------------~GF~Aln~ls~~v~~Gelr~lIGpNGAGKTT~mD~ItGKtr--p~~G~v~f~g~~d 69 (249)
T COG4674 5 ILYLDGVSVSF-------------GGFKALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTR--PQEGEVLFDGDTD 69 (249)
T ss_pred eEEEeceEEEE-------------cceeeeeeeEEEecCCeEEEEECCCCCCceeeeeeecccCC--CCcceEEEcCchh
Confidence 46778888775 45679999999999999999999999999999999999866 4489999999 55
Q ss_pred CCc----ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCC------CCCCHHHHHHHHHHHHHHcCCCccccccccCC
Q 000979 682 KKQ----ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLS------PEVDSETRKMFIDEVMELVELNPLRQSLVGLP 751 (1202)
Q Consensus 682 ~~~----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~------~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~ 751 (1202)
+.. +-.+..||-=+|.|..|+.+||+|||..+.....+ .... .+.+++++++++..||.+.+|...+
T Consensus 70 l~~~~e~~IAr~GIGRKFQ~PtVfe~ltV~eNLelA~~~~k~v~a~L~~r~~-~~e~~ride~La~igL~~~~~~~A~-- 146 (249)
T COG4674 70 LTKLPEHRIARAGIGRKFQKPTVFENLTVRENLELALNRDKSVFASLFARLR-AEERRRIDELLATIGLGDERDRLAA-- 146 (249)
T ss_pred hccCCHHHHHHhccCccccCCeehhhccHHHHHHHHhcCCcchHHHhhhhcC-hhHHHHHHHHHHHcccchhhhhhhh--
Confidence 433 12345678889999999999999999987542211 1112 2345679999999999999988754
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEec
Q 000979 752 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKR 831 (1202)
Q Consensus 752 ~~~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~ 831 (1202)
.||.||||++.|++-|+.+|++|+||||++|+-.+.....-++|++++. +++|+++.||+. .+.+++|+|.+|++
T Consensus 147 ---~LSHGqKQwLEIGMll~Q~P~lLLlDEPvAGMTd~Et~~taeLl~~la~-~hsilVVEHDM~-Fvr~~A~~VTVlh~ 221 (249)
T COG4674 147 ---LLSHGQKQWLEIGMLLAQDPKLLLLDEPVAGMTDAETEKTAELLKSLAG-KHSILVVEHDMG-FVREIADKVTVLHE 221 (249)
T ss_pred ---hhccchhhhhhhheeeccCCcEEEecCccCCCcHHHHHHHHHHHHHHhc-CceEEEEeccHH-HHHHhhheeEEEec
Confidence 5999999999999999999999999999999999999999999999964 689999999997 58899999999996
Q ss_pred CCEEEEEcCCC
Q 000979 832 GGQEIYVGPLG 842 (1202)
Q Consensus 832 gG~~~~~G~~~ 842 (1202)
|.+...|+.+
T Consensus 222 -G~VL~EGsld 231 (249)
T COG4674 222 -GSVLAEGSLD 231 (249)
T ss_pred -cceeecccHH
Confidence 7999999864
|
|
| >TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-33 Score=323.33 Aligned_cols=184 Identities=28% Similarity=0.393 Sum_probs=158.8
Q ss_pred EEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCCc-ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHH
Q 000979 647 LMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ-ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSE 725 (1202)
Q Consensus 647 l~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~-~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~ 725 (1202)
|+|||||||||||++|+|..+ +.+|+|.++|.++.. ...++.++|++|++.+++.+||+||+.|+...+ ....+
T Consensus 1 l~G~nGsGKSTLl~~iaGl~~--p~~G~I~i~g~~i~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~---~~~~~ 75 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQ--PDSGSIMLDGEDVTNVPPHLRHINMVFQSYALFPHMTVEENVAFGLKMR---KVPRA 75 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCCC--CCceEEEECCEECCCCCHHHCCEEEEecCccccCCCcHHHHHHHHHhhc---CCCHH
Confidence 689999999999999999876 458999999987643 223567999999999999999999999976432 12334
Q ss_pred HHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-
Q 000979 726 TRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT- 804 (1202)
Q Consensus 726 ~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~- 804 (1202)
+.+++++++++.+++.+..++. ++.||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++.++
T Consensus 76 ~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgGq~qRvalaraL~~~p~lllLDEP~s~LD~~~~~~l~~~l~~l~~~~ 150 (325)
T TIGR01187 76 EIKPRVLEALRLVQLEEFADRK-----PHQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQL 150 (325)
T ss_pred HHHHHHHHHHHHcCCcchhcCC-----hhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhc
Confidence 4456688999999998877765 3579999999999999999999999999999999999999999999998765
Q ss_pred CCEEEEEecCCCHHHHHhcceEEEEecCCEEEEEcCCC
Q 000979 805 GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLG 842 (1202)
Q Consensus 805 g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G~~~ 842 (1202)
|+|+|++||+++ ++.+++||+++|++ |+++..|+++
T Consensus 151 g~tiiivTHd~~-e~~~~~d~i~vl~~-G~i~~~g~~~ 186 (325)
T TIGR01187 151 GITFVFVTHDQE-EAMTMSDRIAIMRK-GKIAQIGTPE 186 (325)
T ss_pred CCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEEcCHH
Confidence 899999999986 67889999999985 8999999874
|
This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included). |
| >TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-33 Score=352.28 Aligned_cols=214 Identities=24% Similarity=0.383 Sum_probs=176.1
Q ss_pred ceeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCcc
Q 000979 602 HSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP 681 (1202)
Q Consensus 602 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 681 (1202)
..++++||+|+|+.. +++.+|+|+|++++|||.++|+||||||||||+|+|+|..+ +.+|+|.+||.+
T Consensus 336 ~~i~~~~v~f~y~~~----------~~~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~--p~~G~I~i~g~~ 403 (576)
T TIGR02204 336 GEIEFEQVNFAYPAR----------PDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYD--PQSGRILLDGVD 403 (576)
T ss_pred ceEEEEEEEEECCCC----------CCCccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccC--CCCCEEEECCEE
Confidence 469999999999621 12458999999999999999999999999999999999876 458999999987
Q ss_pred CCc---ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCc-------cccccccCC
Q 000979 682 KKQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP-------LRQSLVGLP 751 (1202)
Q Consensus 682 ~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~-------~~~~~~~~~ 751 (1202)
+++ ..+++.++|++|++.+++ .|++||+.++. ++.+++ .++++++.+++.+ -.|+.+|..
T Consensus 404 i~~~~~~~~~~~i~~~~Q~~~lf~-~Ti~~Ni~~~~-----~~~~~~----~~~~~l~~~~l~~~i~~l~~gl~t~i~~~ 473 (576)
T TIGR02204 404 LRQLDPAELRARMALVPQDPVLFA-ASVMENIRYGR-----PDATDE----EVEAAARAAHAHEFISALPEGYDTYLGER 473 (576)
T ss_pred HHhcCHHHHHHhceEEccCCcccc-ccHHHHHhcCC-----CCCCHH----HHHHHHHHcCcHHHHHhCCCCCCceeCCC
Confidence 653 456778999999998875 79999998742 122222 2556666666542 235556554
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEec
Q 000979 752 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKR 831 (1202)
Q Consensus 752 ~~~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~ 831 (1202)
...||||||||++||||++++|++|+||||||+||+.+++.+.+.|+++. +++|+|++||+++ ..+.+|+++.|++
T Consensus 474 -g~~LSgGq~Qrl~laRal~~~~~ililDEpts~lD~~~~~~i~~~l~~~~-~~~t~IiitH~~~--~~~~~d~vi~l~~ 549 (576)
T TIGR02204 474 -GVTLSGGQRQRIAIARAILKDAPILLLDEATSALDAESEQLVQQALETLM-KGRTTLIIAHRLA--TVLKADRIVVMDQ 549 (576)
T ss_pred -CCcCCHHHHHHHHHHHHHHhCCCeEEEeCcccccCHHHHHHHHHHHHHHh-CCCEEEEEecchH--HHHhCCEEEEEEC
Confidence 35699999999999999999999999999999999999999999999884 5899999999984 5688999999985
Q ss_pred CCEEEEEcCCC
Q 000979 832 GGQEIYVGPLG 842 (1202)
Q Consensus 832 gG~~~~~G~~~ 842 (1202)
|+++..|+.+
T Consensus 550 -g~~~~~g~~~ 559 (576)
T TIGR02204 550 -GRIVAQGTHA 559 (576)
T ss_pred -CEEEeeecHH
Confidence 8999999853
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. |
| >cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-33 Score=301.59 Aligned_cols=194 Identities=22% Similarity=0.376 Sum_probs=148.8
Q ss_pred eEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCC
Q 000979 604 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 683 (1202)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 683 (1202)
++++||++.+.... ...+.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|
T Consensus 1 l~~~~l~~~~~~~~--------~~~~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~--~~~G~i~~~g---- 66 (204)
T cd03250 1 ISVEDASFTWDSGE--------QETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELE--KLSGSVSVPG---- 66 (204)
T ss_pred CEEeEEEEecCCCC--------ccccceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCC--CCCCeEEEcC----
Confidence 35788888774100 001358999999999999999999999999999999999876 4589999998
Q ss_pred cccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccc-------cccccCCCCCCC
Q 000979 684 QETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLR-------QSLVGLPGVSGL 756 (1202)
Q Consensus 684 ~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~-------~~~~~~~~~~~L 756 (1202)
.++|++|++.++ ..|++||+.+... ...+ ...+.++.+++.+.. ++.... ....|
T Consensus 67 ------~i~~~~q~~~l~-~~t~~enl~~~~~------~~~~----~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~l 128 (204)
T cd03250 67 ------SIAYVSQEPWIQ-NGTIRENILFGKP------FDEE----RYEKVIKACALEPDLEILPDGDLTEIGE-KGINL 128 (204)
T ss_pred ------EEEEEecCchhc-cCcHHHHhccCCC------cCHH----HHHHHHHHcCcHHHHHhccCcccceecC-CCCcC
Confidence 489999999887 4799999987421 1111 122333333332211 111221 24579
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHH-HHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEec
Q 000979 757 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR-TVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKR 831 (1202)
Q Consensus 757 SgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~-~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~ 831 (1202)
|||||||++|||+|+.+|++++|||||+|||+.+++.+.+ +++++.++|+|||++||+++ .+.. +|++++|++
T Consensus 129 S~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~ll~~~~~~~~tvi~~sh~~~-~~~~-~d~i~~l~~ 202 (204)
T cd03250 129 SGGQKQRISLARAVYSDADIYLLDDPLSAVDAHVGRHIFENCILGLLLNNKTRILVTHQLQ-LLPH-ADQIVVLDN 202 (204)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhccCCCEEEEEeCCHH-HHhh-CCEEEEEeC
Confidence 9999999999999999999999999999999999999988 56666566899999999986 3444 999999985
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-33 Score=345.65 Aligned_cols=208 Identities=19% Similarity=0.248 Sum_probs=167.8
Q ss_pred ceeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCcc
Q 000979 602 HSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP 681 (1202)
Q Consensus 602 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 681 (1202)
..++++||+|+|+. +..+|+|+|+++++||.+||+||||||||||+++|+|..+ +.+|+|.+||.+
T Consensus 321 ~~i~~~~v~f~y~~------------~~~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~--~~~G~i~~~g~~ 386 (547)
T PRK10522 321 QTLELRNVTFAYQD------------NGFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQ--PQSGEILLDGKP 386 (547)
T ss_pred ceEEEEEEEEEeCC------------CCeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEECCEE
Confidence 46999999999951 2358999999999999999999999999999999999876 458999999998
Q ss_pred CCc---ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCH
Q 000979 682 KKQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLST 758 (1202)
Q Consensus 682 ~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSg 758 (1202)
..+ ..+++.++||+|++.+++ .|++|| . ... .++.+++.++.+++.+..+...+..+...|||
T Consensus 387 ~~~~~~~~~~~~i~~v~q~~~lf~-~ti~~n---~------~~~----~~~~~~~~~~~~~l~~~~~~~~~~~~G~~LSg 452 (547)
T PRK10522 387 VTAEQPEDYRKLFSAVFTDFHLFD-QLLGPE---G------KPA----NPALVEKWLERLKMAHKLELEDGRISNLKLSK 452 (547)
T ss_pred CCCCCHHHHhhheEEEecChhHHH-Hhhccc---c------Cch----HHHHHHHHHHHcCCchhhhccccCCCCCCCCH
Confidence 754 356788999999988775 567776 1 111 12346788888888754332111111246999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCCHHHHHhcceEEEEecCCEEEE
Q 000979 759 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIY 837 (1202)
Q Consensus 759 GqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~ 837 (1202)
|||||++|||||+++|++|+||||||+||+.++..+.+.|.+..+ .|+|+|++||+++ ..+.+|++++|++ |+++.
T Consensus 453 Gq~qRl~lARal~~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tvi~itH~~~--~~~~~d~i~~l~~-G~i~e 529 (547)
T PRK10522 453 GQKKRLALLLALAEERDILLLDEWAADQDPHFRREFYQVLLPLLQEMGKTIFAISHDDH--YFIHADRLLEMRN-GQLSE 529 (547)
T ss_pred HHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEEechH--HHHhCCEEEEEEC-CEEEE
Confidence 999999999999999999999999999999999999999976643 5899999999974 5788999999985 78876
Q ss_pred EcC
Q 000979 838 VGP 840 (1202)
Q Consensus 838 ~G~ 840 (1202)
...
T Consensus 530 ~~~ 532 (547)
T PRK10522 530 LTG 532 (547)
T ss_pred ecC
Confidence 643
|
|
| >TIGR00630 uvra excinuclease ABC, A subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-32 Score=342.33 Aligned_cols=124 Identities=23% Similarity=0.282 Sum_probs=101.4
Q ss_pred CCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCcc-ccccccCCCCCCCCHHHHHHHHHHHHHhh---CCCEEE
Q 000979 703 FVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPL-RQSLVGLPGVSGLSTEQRKRLTIAVELVA---NPSIIF 778 (1202)
Q Consensus 703 ~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~-~~~~~~~~~~~~LSgGqrqRv~ia~aL~~---~p~ill 778 (1202)
.+||.|.+.|...+. .. ....++++.+||... .+.. .+.|||||+||+.||++|+. +|++++
T Consensus 789 ~~tv~e~~~f~~~~~---~i------~~~l~~L~~~gL~~l~l~~~-----~~tLSgGe~QRl~LA~aL~~~~~~p~llI 854 (924)
T TIGR00630 789 DMTVEEAYEFFEAVP---SI------SRKLQTLCDVGLGYIKLGQP-----ATTLSGGEAQRIKLAKELSKRSTGRTLYI 854 (924)
T ss_pred CCcHHHHHHHHHhcc---ch------hHHHHHHHHcCCCchhhcCc-----cccCCHHHHHHHHHHHHHhhcCCCCCEEE
Confidence 468888888765432 11 123578888999653 3443 35799999999999999997 599999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEe-----cCCEEEEEcCCC
Q 000979 779 MDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK-----RGGQEIYVGPLG 842 (1202)
Q Consensus 779 lDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~-----~gG~~~~~G~~~ 842 (1202)
|||||+|||+.....+++.|+++.++|.|||+++|++. ..+.+|+++.|. +||++++.|+++
T Consensus 855 LDEPtsgLD~~~~~~L~~~L~~l~~~G~TVIvi~H~~~--~i~~aD~ii~Lgp~~G~~gG~iv~~G~~~ 921 (924)
T TIGR00630 855 LDEPTTGLHFDDIKKLLEVLQRLVDQGNTVVVIEHNLD--VIKTADYIIDLGPEGGDGGGTIVASGTPE 921 (924)
T ss_pred EECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH--HHHhCCEEEEecCCccCCCCEEEEeCCHH
Confidence 99999999999999999999999888999999999985 346799999993 479999999864
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-34 Score=294.74 Aligned_cols=202 Identities=26% Similarity=0.369 Sum_probs=169.5
Q ss_pred eEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCCc--ccccceEEEee-cCCCCCCCCC
Q 000979 629 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ--ETFARISGYCE-QNDIHSPFVT 705 (1202)
Q Consensus 629 ~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~--~~~~~~~~~v~-q~~~~~~~lT 705 (1202)
..+++||||+|++|++++++|||||||||+||+|+|... |.+|.|.++|...-. +.+-+.+++|. |.-.+.-.+-
T Consensus 37 ~~AVqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGll~--p~~G~v~V~G~~Pf~~~~~~~~~~~~v~gqk~ql~Wdlp 114 (325)
T COG4586 37 IEAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLL--PTSGKVRVNGKDPFRRREEYLRSIGLVMGQKLQLWWDLP 114 (325)
T ss_pred hhhhheeeeecCCCcEEEEEcCCCCcchhhHHHHhCccc--cCCCeEEecCcCcchhHHHHHHHHHHHhhhhheeeeech
Confidence 458999999999999999999999999999999999877 558999999986532 23344556654 4344554556
Q ss_pred HHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCC
Q 000979 706 IYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 785 (1202)
Q Consensus 706 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~illlDEPtsg 785 (1202)
+.|.+.....++ +.+.++-+++.+.+.+.+++.+..+.++ +.||-|||.|+.||.+|+++|+||||||||-|
T Consensus 115 ~~ds~~v~~~Iy---~Ipd~~F~~r~~~l~eiLdl~~~lk~~v-----r~LSlGqRmraeLaaaLLh~p~VLfLDEpTvg 186 (325)
T COG4586 115 ALDSLEVLKLIY---EIPDDEFAERLDFLTEILDLEGFLKWPV-----RKLSLGQRMRAELAAALLHPPKVLFLDEPTVG 186 (325)
T ss_pred hhhhHHHHHHHH---hCCHHHHHHHHHHHHHHhcchhhhhhhh-----hhccchHHHHHHHHHHhcCCCcEEEecCCccC
Confidence 777776654443 4555666778899999999988777764 67999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHh-CCCEEEEEecCCCHHHHHhcceEEEEecCCEEEEEcCCC
Q 000979 786 LDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLG 842 (1202)
Q Consensus 786 LD~~~~~~v~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G~~~ 842 (1202)
||...+..+.+.|++..+ .+.||+.+||+.+ ++...||||++++. |+++|+|+..
T Consensus 187 LDV~aq~~ir~Flke~n~~~~aTVllTTH~~~-di~~lc~rv~~I~~-Gqlv~dg~l~ 242 (325)
T COG4586 187 LDVNAQANIREFLKEYNEERQATVLLTTHIFD-DIATLCDRVLLIDQ-GQLVFDGTLA 242 (325)
T ss_pred cchhHHHHHHHHHHHHHHhhCceEEEEecchh-hHHHhhhheEEeeC-CcEeecccHH
Confidence 999999999999999864 4899999999998 79999999999985 8999999973
|
|
| >cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-33 Score=292.64 Aligned_cols=166 Identities=31% Similarity=0.498 Sum_probs=142.6
Q ss_pred eEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCC
Q 000979 604 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 683 (1202)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 683 (1202)
++++|+++.++. .+..+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|++.++|.+..
T Consensus 1 l~~~~l~~~~~~-----------~~~~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~--~~~G~i~~~g~~~~ 67 (171)
T cd03228 1 IEFKNVSFSYPG-----------RPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYD--PTSGEILIDGVDLR 67 (171)
T ss_pred CEEEEEEEEcCC-----------CCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCC--CCCCEEEECCEEhh
Confidence 357888887741 11258999999999999999999999999999999999876 45799999998754
Q ss_pred c---ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHH
Q 000979 684 Q---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQ 760 (1202)
Q Consensus 684 ~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGq 760 (1202)
. ..+++.++|++|++.+++ .|+.||+ |||||
T Consensus 68 ~~~~~~~~~~i~~~~~~~~~~~-~t~~e~l---------------------------------------------LS~G~ 101 (171)
T cd03228 68 DLDLESLRKNIAYVPQDPFLFS-GTIRENI---------------------------------------------LSGGQ 101 (171)
T ss_pred hcCHHHHHhhEEEEcCCchhcc-chHHHHh---------------------------------------------hCHHH
Confidence 2 234567899999987765 5888776 89999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEec
Q 000979 761 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKR 831 (1202)
Q Consensus 761 rqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~ 831 (1202)
|||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++. +++|+|++||++. ++.. ||++++|++
T Consensus 102 ~~rl~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~-~~~tii~~sh~~~-~~~~-~d~~~~l~~ 169 (171)
T cd03228 102 RQRIAIARALLRDPPILILDEATSALDPETEALILEALRALA-KGKTVIVIAHRLS-TIRD-ADRIIVLDD 169 (171)
T ss_pred HHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHhc-CCCEEEEEecCHH-HHHh-CCEEEEEcC
Confidence 999999999999999999999999999999999999999985 4799999999986 4555 999999985
|
They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03290 ABCC_SUR1_N The SUR domain 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-33 Score=303.12 Aligned_cols=187 Identities=25% Similarity=0.337 Sum_probs=147.7
Q ss_pred eEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCCc-------ccccceEEEeecCCCCC
Q 000979 629 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ-------ETFARISGYCEQNDIHS 701 (1202)
Q Consensus 629 ~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~-------~~~~~~~~~v~q~~~~~ 701 (1202)
+.+|+|+||++++||+++|+||||||||||+++|+|... +.+|+|.++|.+... ...++.++|++|++.++
T Consensus 14 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~ 91 (218)
T cd03290 14 LATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQ--TLEGKVHWSNKNESEPSFEATRSRNRYSVAYAAQKPWLL 91 (218)
T ss_pred CcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCC--CCCCeEEECCcccccccccccchhhcceEEEEcCCCccc
Confidence 458999999999999999999999999999999999876 458999999986532 12346799999998877
Q ss_pred CCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCcccc-------ccccCCCCCCCCHHHHHHHHHHHHHhhCC
Q 000979 702 PFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQ-------SLVGLPGVSGLSTEQRKRLTIAVELVANP 774 (1202)
Q Consensus 702 ~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~-------~~~~~~~~~~LSgGqrqRv~ia~aL~~~p 774 (1202)
..|++||+.+... ...+ ..+++++.+++.+..+ +.... .+..||||||||++|||+|+.+|
T Consensus 92 -~~t~~~nl~~~~~------~~~~----~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~LS~G~~qrv~laral~~~p 159 (218)
T cd03290 92 -NATVEENITFGSP------FNKQ----RYKAVTDACSLQPDIDLLPFGDQTEIGE-RGINLSGGQRQRICVARALYQNT 159 (218)
T ss_pred -cccHHHHHhhcCc------CCHH----HHHHHHHHhCcHHHHHhCcCccccCccc-CCCcCCHHHHHHHHHHHHHhhCC
Confidence 5799999987421 1111 1234555556543221 11111 24579999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHH--HHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEec
Q 000979 775 SIIFMDEPTSGLDARAAAIVMR--TVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKR 831 (1202)
Q Consensus 775 ~illlDEPtsgLD~~~~~~v~~--~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~ 831 (1202)
++|||||||+|||+.++..+++ .++.+.++|.|+|++||+++ .+ ..+|++++|.+
T Consensus 160 ~illlDEPt~~LD~~~~~~l~~~~ll~~~~~~~~tii~~sH~~~-~~-~~~d~i~~l~~ 216 (218)
T cd03290 160 NIVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLVTHKLQ-YL-PHADWIIAMKD 216 (218)
T ss_pred CEEEEeCCccccCHHHHHHHHHHHHHHHHhcCCCEEEEEeCChH-HH-hhCCEEEEecC
Confidence 9999999999999999999998 66666566899999999986 34 57999999975
|
The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. |
| >cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-33 Score=303.38 Aligned_cols=200 Identities=20% Similarity=0.223 Sum_probs=158.0
Q ss_pred EeecceEEEe-----CCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCCcccccceEEEeecCCCCCCCCC
Q 000979 631 LLNGVSGAFR-----PGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVT 705 (1202)
Q Consensus 631 iL~~vs~~i~-----~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~lT 705 (1202)
.++|++++++ +||+++|+||||||||||+++|+|... +.+|+|.++|. .++|++|+....+.+|
T Consensus 9 ~~~~~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~--p~~G~i~~~g~---------~i~~~~q~~~~~~~~t 77 (246)
T cd03237 9 TLGEFTLEVEGGSISESEVIGILGPNGIGKTTFIKMLAGVLK--PDEGDIEIELD---------TVSYKPQYIKADYEGT 77 (246)
T ss_pred ccCcEEEEEecCCcCCCCEEEEECCCCCCHHHHHHHHhCCCc--CCCCeEEECCc---------eEEEecccccCCCCCC
Confidence 4666666665 799999999999999999999999876 45899999884 4799999987777899
Q ss_pred HHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCC
Q 000979 706 IYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 785 (1202)
Q Consensus 706 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~illlDEPtsg 785 (1202)
|+|++.+...... .. ....+++++.+++.+..++.+ +.||||||||++||+||+.+|++++|||||++
T Consensus 78 v~e~l~~~~~~~~----~~---~~~~~~~l~~l~l~~~~~~~~-----~~LSgGe~qrv~iaraL~~~p~llllDEPt~~ 145 (246)
T cd03237 78 VRDLLSSITKDFY----TH---PYFKTEIAKPLQIEQILDREV-----PELSGGELQRVAIAACLSKDADIYLLDEPSAY 145 (246)
T ss_pred HHHHHHHHhhhcc----cc---HHHHHHHHHHcCCHHHhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCccc
Confidence 9999976432110 11 123578889999987766653 57999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhcceEEEEecCCEEE--EEcCCCccchhHHHHHhhC
Q 000979 786 LDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEI--YVGPLGRHSCHLISYFEAI 855 (1202)
Q Consensus 786 LD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~--~~G~~~~~~~~~~~~f~~~ 855 (1202)
||+.++..+.+.|++++++ |+|||++||++. .+...+|++++|+. +..+ ..+++......+..|++..
T Consensus 146 LD~~~~~~l~~~l~~~~~~~~~tiiivsHd~~-~~~~~~d~i~~l~~-~~~~~~~~~~~~~~~~~~~~~l~~~ 216 (246)
T cd03237 146 LDVEQRLMASKVIRRFAENNEKTAFVVEHDII-MIDYLADRLIVFEG-EPSVNGVANPPQSLRSGMNRFLKNL 216 (246)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEcC-CCeeEEEeCCchHHHHHHHHHHHHC
Confidence 9999999999999998754 899999999986 56778999999963 3222 3344433333455666655
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. |
| >PRK10535 macrolide transporter ATP-binding /permease protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-32 Score=340.94 Aligned_cols=219 Identities=23% Similarity=0.335 Sum_probs=185.1
Q ss_pred eeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccC
Q 000979 603 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 682 (1202)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 682 (1202)
.++++|+++.|+.. .+.+.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|++.++|.++
T Consensus 4 ~l~~~nl~~~y~~~---------~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~--~~~G~i~~~g~~i 72 (648)
T PRK10535 4 LLELKDIRRSYPSG---------EEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDK--PTSGTYRVAGQDV 72 (648)
T ss_pred EEEEeeEEEEeCCC---------CCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCeEEEECCEEc
Confidence 47899999988521 123568999999999999999999999999999999999876 4589999999876
Q ss_pred Ccc---c----ccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCC
Q 000979 683 KQE---T----FARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSG 755 (1202)
Q Consensus 683 ~~~---~----~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~ 755 (1202)
... . .++.++|++|++.+++.+|+.||+.+..... ....++.++++.++++.+++.+..|+.. +.
T Consensus 73 ~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~lgl~~~~~~~~-----~~ 144 (648)
T PRK10535 73 ATLDADALAQLRREHFGFIFQRYHLLSHLTAAQNVEVPAVYA---GLERKQRLLRAQELLQRLGLEDRVEYQP-----SQ 144 (648)
T ss_pred CcCCHHHHHHHHhccEEEEeCCcccCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCChhhhcCCc-----cc
Confidence 431 1 2467999999999999999999998865322 1233445567889999999987766653 57
Q ss_pred CCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCCEE
Q 000979 756 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQE 835 (1202)
Q Consensus 756 LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~ 835 (1202)
||||||||++|||||+++|++|+|||||+|||+.+++.+.+.|++++++|+|+|++||+++ ..+.|||+++|++ |++
T Consensus 145 LS~Gq~qrv~LAraL~~~P~lLllDEP~~gLD~~s~~~l~~ll~~l~~~g~tilivsH~~~--~~~~~d~i~~l~~-G~i 221 (648)
T PRK10535 145 LSGGQQQRVSIARALMNGGQVILADEPTGALDSHSGEEVMAILHQLRDRGHTVIIVTHDPQ--VAAQAERVIEIRD-GEI 221 (648)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEECCCHH--HHHhCCEEEEEEC-CEE
Confidence 9999999999999999999999999999999999999999999998777999999999975 4567999999985 899
Q ss_pred EEEcCCCc
Q 000979 836 IYVGPLGR 843 (1202)
Q Consensus 836 ~~~G~~~~ 843 (1202)
+..|++++
T Consensus 222 ~~~g~~~~ 229 (648)
T PRK10535 222 VRNPPAQE 229 (648)
T ss_pred EeecCccc
Confidence 99999854
|
|
| >cd03291 ABCC_CFTR1 The CFTR subfamily domain 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-32 Score=304.03 Aligned_cols=202 Identities=20% Similarity=0.336 Sum_probs=157.8
Q ss_pred CCCCceeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEE
Q 000979 598 PFEPHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITI 677 (1202)
Q Consensus 598 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~ 677 (1202)
+.....++++|+++.. +.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.+
T Consensus 34 ~~~~~~l~i~nls~~~---------------~~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~--p~~G~I~i 96 (282)
T cd03291 34 SSDDNNLFFSNLCLVG---------------APVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELE--PSEGKIKH 96 (282)
T ss_pred CCCCCeEEEEEEEEec---------------ccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEE
Confidence 3445678999998741 247999999999999999999999999999999999876 45899999
Q ss_pred cCccCCcccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccc-------cccccC
Q 000979 678 SGYPKKQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLR-------QSLVGL 750 (1202)
Q Consensus 678 ~g~~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~-------~~~~~~ 750 (1202)
+| .++|++|++.+++ .||+||+.+.... ... .+.+.++.+++.+.. ++.++.
T Consensus 97 ~g----------~i~yv~q~~~l~~-~tv~enl~~~~~~------~~~----~~~~~l~~~~l~~~l~~~~~~~~~~~~~ 155 (282)
T cd03291 97 SG----------RISFSSQFSWIMP-GTIKENIIFGVSY------DEY----RYKSVVKACQLEEDITKFPEKDNTVLGE 155 (282)
T ss_pred CC----------EEEEEeCcccccc-cCHHHHhhccccc------CHH----HHHHHHHHhCCHHHHHhccccccceecC
Confidence 87 2799999988877 4999999864211 111 122333334433211 222221
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHH-HHHHhCCCEEEEEecCCCHHHHHhcceEEEE
Q 000979 751 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV-RNTVDTGRTVVCTIHQPSIDIFEAFDELFLM 829 (1202)
Q Consensus 751 ~~~~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l-~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l 829 (1202)
....||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.+ +++. ++.|||++||++. .+ ..+|++++|
T Consensus 156 -~~~~LSgGq~qrv~lAraL~~~p~iLiLDEPt~gLD~~~~~~l~~~ll~~~~-~~~tIiiisH~~~-~~-~~~d~i~~l 231 (282)
T cd03291 156 -GGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEKEIFESCVCKLM-ANKTRILVTSKME-HL-KKADKILIL 231 (282)
T ss_pred -CCCcCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHhh-CCCEEEEEeCChH-HH-HhCCEEEEE
Confidence 23579999999999999999999999999999999999999998865 5554 5799999999986 34 679999999
Q ss_pred ecCCEEEEEcCCC
Q 000979 830 KRGGQEIYVGPLG 842 (1202)
Q Consensus 830 ~~gG~~~~~G~~~ 842 (1202)
++ |++++.|++.
T Consensus 232 ~~-G~i~~~g~~~ 243 (282)
T cd03291 232 HE-GSSYFYGTFS 243 (282)
T ss_pred EC-CEEEEECCHH
Confidence 85 8999999864
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-34 Score=309.72 Aligned_cols=216 Identities=27% Similarity=0.413 Sum_probs=179.9
Q ss_pred CCCceeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEc
Q 000979 599 FEPHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITIS 678 (1202)
Q Consensus 599 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~ 678 (1202)
..++.+.|++|+|.|. +.+++|+++||++++|+.+|++||||+||||++++|-...+ ..+|.|.+|
T Consensus 258 ~~~g~v~F~~V~F~y~------------~~r~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD--~~sG~I~id 323 (497)
T COG5265 258 VRLGAVAFINVSFAYD------------PRRPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYD--VNSGSITID 323 (497)
T ss_pred cccceEEEEEEEeecc------------ccchhhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHhC--CcCceEEEc
Confidence 4466799999999985 34678999999999999999999999999999999976554 668999999
Q ss_pred CccCCc---ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHH-----HHHHHHHHcCCCccccccccC
Q 000979 679 GYPKKQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKM-----FIDEVMELVELNPLRQSLVGL 750 (1202)
Q Consensus 679 g~~~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~-----~~~~~l~~l~l~~~~~~~~~~ 750 (1202)
|+++.. ...|+.+|.||||-.++. -|...|+.|+. +..+.++..+ .+.+.++ .+.+..|+.+|.
T Consensus 324 ~qdir~vtq~slR~aIg~VPQDtvLFN-Dti~yni~ygr-----~~at~eev~aaa~~aqi~~fi~--~lP~gy~t~Vge 395 (497)
T COG5265 324 GQDIRDVTQQSLRRAIGIVPQDTVLFN-DTIAYNIKYGR-----PDATAEEVGAAAEAAQIHDFIQ--SLPEGYDTGVGE 395 (497)
T ss_pred chhHHHhHHHHHHHHhCcCcccceehh-hhHHHHHhccC-----ccccHHHHHHHHHHhhhhHHHH--hCchhhhcccch
Confidence 998653 567889999999888874 68888988763 2334443322 2223333 356678899998
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEe
Q 000979 751 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 830 (1202)
Q Consensus 751 ~~~~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~ 830 (1202)
.|.+ |||||||||+|||+++++|+||+|||.||+||..+++.++..|++.. .|+|.+++.|.++. .--+|.+++|+
T Consensus 396 rglk-lSggekqrvaiar~ilk~p~il~~deatsaldt~te~~iq~~l~~~~-~~rttlviahrlst--i~~adeiivl~ 471 (497)
T COG5265 396 RGLK-LSGGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQAALREVS-AGRTTLVIAHRLST--IIDADEIIVLD 471 (497)
T ss_pred heee-ccCchHHHHHHHHHHhcCCCEEEEehhhhHhhhhHHHHHHHHHHHHh-CCCeEEEEeehhhh--ccCCceEEEee
Confidence 7765 99999999999999999999999999999999999999999999975 69999999999873 45679999998
Q ss_pred cCCEEEEEcCC
Q 000979 831 RGGQEIYVGPL 841 (1202)
Q Consensus 831 ~gG~~~~~G~~ 841 (1202)
+ |+++..|+-
T Consensus 472 ~-g~i~erg~h 481 (497)
T COG5265 472 N-GRIVERGTH 481 (497)
T ss_pred C-CEEEecCcH
Confidence 5 899999984
|
|
| >KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-31 Score=337.61 Aligned_cols=223 Identities=28% Similarity=0.378 Sum_probs=194.1
Q ss_pred eeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccC
Q 000979 603 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 682 (1202)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 682 (1202)
.+..++++..|... +.+++++|+.|++||+.+++|||||||||++|+|+|..+ +.+|++.++|+++
T Consensus 564 ~~~~~~L~k~y~~~------------~~Av~~ls~~V~~gecfgLLG~NGAGKtT~f~mltG~~~--~t~G~a~i~g~~i 629 (885)
T KOG0059|consen 564 ALVLNNLSKVYGGK------------DGAVRGLSFAVPPGECFGLLGVNGAGKTTTFKMLTGETK--PTSGEALIKGHDI 629 (885)
T ss_pred eEEEcceeeeecch------------hhhhcceEEEecCCceEEEecCCCCCchhhHHHHhCCcc--CCcceEEEecCcc
Confidence 45667777666421 118999999999999999999999999999999999877 5689999999887
Q ss_pred Cc----ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCH
Q 000979 683 KQ----ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLST 758 (1202)
Q Consensus 683 ~~----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSg 758 (1202)
.. ...++.+||+||+|.+++.+|.||++.+.++++.- ...+.++.++.+++.++|.+..|+.+ +.+||
T Consensus 630 ~~~~~~~~~~~~iGyCPQ~d~l~~~lT~rEhL~~~arlrG~---~~~di~~~v~~ll~~~~L~~~~~~~~-----~~ySg 701 (885)
T KOG0059|consen 630 TVSTDFQQVRKQLGYCPQFDALWEELTGREHLEFYARLRGL---PRSDIGSAIEKLLRLVGLGPYANKQV-----RTYSG 701 (885)
T ss_pred ccccchhhhhhhcccCCchhhhhhhccHHHHHHHHHHHcCC---ChhHHHHHHHHHHHHcCChhhhccch-----hhCCC
Confidence 53 23677899999999999999999999999998853 33445566899999999999999985 46999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCCEEEEE
Q 000979 759 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYV 838 (1202)
Q Consensus 759 GqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~ 838 (1202)
|+|||+++|.||+.+|++++|||||+|+||.+++.++++++++.++|+.+|+|||.++ |...+|||+.+|.+ |++...
T Consensus 702 G~kRkLs~aialig~p~vi~LDEPstGmDP~arr~lW~ii~~~~k~g~aiiLTSHsMe-E~EaLCtR~aImv~-G~l~ci 779 (885)
T KOG0059|consen 702 GNKRRLSFAIALIGDPSVILLDEPSTGLDPKARRHLWDIIARLRKNGKAIILTSHSME-EAEALCTRTAIMVI-GQLRCI 779 (885)
T ss_pred cchhhHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHHhhhhheeec-CeeEEe
Confidence 9999999999999999999999999999999999999999999888889999999986 78889999999986 799999
Q ss_pred cCCCccchhHHHHHh
Q 000979 839 GPLGRHSCHLISYFE 853 (1202)
Q Consensus 839 G~~~~~~~~~~~~f~ 853 (1202)
|++ +++...|.
T Consensus 780 Gs~----q~LKsrfG 790 (885)
T KOG0059|consen 780 GSP----QELKSRYG 790 (885)
T ss_pred cCh----HHHHhhcC
Confidence 997 56776663
|
|
| >PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-32 Score=294.51 Aligned_cols=186 Identities=18% Similarity=0.168 Sum_probs=150.0
Q ss_pred EeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEE-EcCccCCcccccceEEEeecCCCCCCCCCHHHH
Q 000979 631 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIT-ISGYPKKQETFARISGYCEQNDIHSPFVTIYES 709 (1202)
Q Consensus 631 iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~-~~g~~~~~~~~~~~~~~v~q~~~~~~~lTv~e~ 709 (1202)
+|+||||++++||+++|+||||||||||+++|+|..+ +.+|+|. ++|... .+.+++.+++.+|++||
T Consensus 2 vl~~vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~--~~sG~i~~~~~~~~----------~~~~~~~l~~~ltv~en 69 (213)
T PRK15177 2 VLDKTDFVMGYHEHIGILAAPGSGKTTLTRLLCGLDA--PDEGDFIGLRGDAL----------PLGANSFILPGLTGEEN 69 (213)
T ss_pred eeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcc--CCCCCEEEecCcee----------ccccccccCCcCcHHHH
Confidence 6999999999999999999999999999999999866 4578886 666432 12345668889999999
Q ss_pred HHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHH
Q 000979 710 LLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 789 (1202)
Q Consensus 710 l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~ 789 (1202)
+.+...... .+.++. .+.+.+..++.+..++.+ +.||||||||++|||||+.+|++++|||||++||+.
T Consensus 70 l~~~~~~~~---~~~~~~---~~~~~~~~~l~~~~~~~~-----~~lS~G~~qrv~la~al~~~p~llllDEP~~~lD~~ 138 (213)
T PRK15177 70 ARMMASLYG---LDGDEF---SHFCYQLTQLEQCYTDRV-----SEYSVTMKTHLAFAINLLLPCRLYIADGKLYTGDNA 138 (213)
T ss_pred HHHHHHHcC---CCHHHH---HHHHHHHhChhHHhhchH-----hhcCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHH
Confidence 998765431 222222 233445567766666653 579999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCCEEEEEcCCC
Q 000979 790 AAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLG 842 (1202)
Q Consensus 790 ~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G~~~ 842 (1202)
++..+.+.|.+..+ ++|+|++||+++ .+.+.+|++++|.+ |++++.|+.+
T Consensus 139 ~~~~~~~~l~~~~~-~~~ii~vsH~~~-~~~~~~d~i~~l~~-G~i~~~~~~~ 188 (213)
T PRK15177 139 TQLRMQAALACQLQ-QKGLIVLTHNPR-LIKEHCHAFGVLLH-GKITMCEDLA 188 (213)
T ss_pred HHHHHHHHHHHHhh-CCcEEEEECCHH-HHHHhcCeeEEEEC-CeEEEeCCHH
Confidence 99999998865433 478999999986 57788999999985 8999999874
|
|
| >TIGR01194 cyc_pep_trnsptr cyclic peptide transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-32 Score=337.46 Aligned_cols=210 Identities=18% Similarity=0.223 Sum_probs=167.9
Q ss_pred ceeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCcc
Q 000979 602 HSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP 681 (1202)
Q Consensus 602 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 681 (1202)
..++++||+|+|+..+ ..++.+|+|+|+++++||++||+||||||||||+++|+|..+ +.+|+|.+||.+
T Consensus 336 ~~i~~~~v~f~y~~~~--------~~~~~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~~~--p~~G~i~~~g~~ 405 (555)
T TIGR01194 336 DSIELKDVHMNPKAPE--------GSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYI--PQEGEILLDGAA 405 (555)
T ss_pred ceEEEEEEEEEeCCCC--------CCcCceeccceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEE
Confidence 5699999999996210 012358999999999999999999999999999999999876 458999999998
Q ss_pred CCc---ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCcccccc-ccCCCCCCCC
Q 000979 682 KKQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSL-VGLPGVSGLS 757 (1202)
Q Consensus 682 ~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~-~~~~~~~~LS 757 (1202)
+.+ ..+++.++||+|++.+++ .|+++|.. +. ..++.++++++.+++.+..+.. .|......||
T Consensus 406 i~~~~~~~~~~~i~~v~q~~~lf~-~ti~~n~~--------~~----~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~LS 472 (555)
T TIGR01194 406 VSADSRDDYRDLFSAIFADFHLFD-DLIGPDEG--------EH----ASLDNAQQYLQRLEIADKVKIEDGGFSTTTALS 472 (555)
T ss_pred CCCCCHHHHHhhCcEEccChhhhh-hhhhcccc--------cc----hhHHHHHHHHHHcCCchhhcccccccCCcccCC
Confidence 754 346778999999988775 47777731 11 1223467888888887654332 2222225699
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHH-HHHhCCCEEEEEecCCCHHHHHhcceEEEEecCCEEE
Q 000979 758 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR-NTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEI 836 (1202)
Q Consensus 758 gGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~-~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~ 836 (1202)
||||||++|||||+++|++|+||||||+||+.+++.+.+.+. .+..+|+|+|++||+++ ..+.+|++++|++ |+++
T Consensus 473 gGq~qRlalaRall~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tiiiisH~~~--~~~~~d~i~~l~~-G~i~ 549 (555)
T TIGR01194 473 TGQQKRLALICAWLEDRPILLFDEWAADQDPAFKRFFYEELLPDLKRQGKTIIIISHDDQ--YFELADQIIKLAA-GCIV 549 (555)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHH--HHHhCCEEEEEEC-CEEE
Confidence 999999999999999999999999999999999999998664 45556899999999985 5689999999985 7876
Q ss_pred E
Q 000979 837 Y 837 (1202)
Q Consensus 837 ~ 837 (1202)
.
T Consensus 550 ~ 550 (555)
T TIGR01194 550 K 550 (555)
T ss_pred E
Confidence 4
|
This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake. |
| >COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-32 Score=289.32 Aligned_cols=189 Identities=26% Similarity=0.346 Sum_probs=159.6
Q ss_pred eeEEeeeEEEEecCchhhhcccccC-ceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCcc
Q 000979 603 SLTFDEVVYSVDMPEEMKVQGVLED-KLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP 681 (1202)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 681 (1202)
-++.+|++..++..... ... ...+++||||+|++||+++|+|.||||||||-|+|.|+.. +.+|+|.++|.+
T Consensus 4 ll~v~~l~k~f~~~~~~-----~~~~~v~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~--pt~G~i~f~g~~ 76 (268)
T COG4608 4 LLEVKNLKKYFPVGKGF-----GKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEE--PTSGEILFEGKD 76 (268)
T ss_pred eEEEeccEEEEeccccc-----CcccceEEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCcC--CCCceEEEcCcc
Confidence 36788999888754210 111 3579999999999999999999999999999999999877 568999999987
Q ss_pred CCcccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCCCCCCCCHHH
Q 000979 682 KKQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP-LRQSLVGLPGVSGLSTEQ 760 (1202)
Q Consensus 682 ~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~-~~~~~~~~~~~~~LSgGq 760 (1202)
+.... .+++++++.++++.+|+.. ..++. +++|||||
T Consensus 77 i~~~~-------------------------------------~~~~~~~v~elL~~Vgl~~~~~~ry-----PhelSGGQ 114 (268)
T COG4608 77 ITKLS-------------------------------------KEERRERVLELLEKVGLPEEFLYRY-----PHELSGGQ 114 (268)
T ss_pred hhhcc-------------------------------------hhHHHHHHHHHHHHhCCCHHHhhcC-----CcccCchh
Confidence 54211 2345567899999999865 33332 47899999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhcceEEEEecCCEEEEEc
Q 000979 761 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVG 839 (1202)
Q Consensus 761 rqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G 839 (1202)
|||++|||||+.+|+++++|||||+||...+.+++++|+++.++ |.|.++++||.+ -+..++||+.+|.. |+++..|
T Consensus 115 rQRi~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~-vv~~isdri~VMy~-G~iVE~g 192 (268)
T COG4608 115 RQRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLS-VVRYISDRIAVMYL-GKIVEIG 192 (268)
T ss_pred hhhHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHH-hhhhhcccEEEEec-CceeEec
Confidence 99999999999999999999999999999999999999999765 999999999987 47788999999996 8999999
Q ss_pred CCC
Q 000979 840 PLG 842 (1202)
Q Consensus 840 ~~~ 842 (1202)
+.+
T Consensus 193 ~~~ 195 (268)
T COG4608 193 PTE 195 (268)
T ss_pred CHH
Confidence 964
|
|
| >PRK15064 ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-32 Score=332.38 Aligned_cols=206 Identities=22% Similarity=0.329 Sum_probs=167.3
Q ss_pred eEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCC
Q 000979 604 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 683 (1202)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 683 (1202)
++++|++++|. ++++|+|+||++++||+++|+||||||||||||+|+|..+ +.+|+|.++|.
T Consensus 2 l~i~~ls~~~~-------------~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~--p~~G~i~~~~~--- 63 (530)
T PRK15064 2 LSTANITMQFG-------------AKPLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLE--PSAGNVSLDPN--- 63 (530)
T ss_pred EEEEEEEEEeC-------------CcEeEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEecCC---
Confidence 57889998873 2458999999999999999999999999999999999876 34799999873
Q ss_pred cccccceEEEeecCCCCCCCCCHHHHHHHHHH-c----------cCCCCC------------------CHHHHHHHHHHH
Q 000979 684 QETFARISGYCEQNDIHSPFVTIYESLLFSAW-L----------RLSPEV------------------DSETRKMFIDEV 734 (1202)
Q Consensus 684 ~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~-~----------~~~~~~------------------~~~~~~~~~~~~ 734 (1202)
+.++|++|++.+++.+||+|++.++.. . ...... ...+.+++++++
T Consensus 64 -----~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (530)
T PRK15064 64 -----ERLGKLRQDQFAFEEFTVLDTVIMGHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGEL 138 (530)
T ss_pred -----CEEEEEeccCCcCCCCcHHHHHHHhhHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHH
Confidence 348999999988899999999986421 0 000000 001123467889
Q ss_pred HHHcCCCccc-cccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEec
Q 000979 735 MELVELNPLR-QSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIH 813 (1202)
Q Consensus 735 l~~l~l~~~~-~~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H 813 (1202)
++.+|+.+.. +.. +..|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|++ .|.|||++||
T Consensus 139 l~~~gl~~~~~~~~-----~~~LSgGq~qrv~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~---~~~tiiivsH 210 (530)
T PRK15064 139 LLGVGIPEEQHYGL-----MSEVAPGWKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLNE---RNSTMIIISH 210 (530)
T ss_pred HHhCCCChhHhcCc-----hhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHh---CCCeEEEEeC
Confidence 9999997533 233 357999999999999999999999999999999999999999999863 5899999999
Q ss_pred CCCHHHHHhcceEEEEecCCEE-EEEcCCC
Q 000979 814 QPSIDIFEAFDELFLMKRGGQE-IYVGPLG 842 (1202)
Q Consensus 814 ~~~~~~~~~~d~v~~l~~gG~~-~~~G~~~ 842 (1202)
+++ .+.+.||++++|++ |++ ++.|+++
T Consensus 211 d~~-~~~~~~d~i~~l~~-g~i~~~~g~~~ 238 (530)
T PRK15064 211 DRH-FLNSVCTHMADLDY-GELRVYPGNYD 238 (530)
T ss_pred CHH-HHHhhcceEEEEeC-CEEEEecCCHH
Confidence 986 57789999999985 788 5888763
|
|
| >PRK11819 putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-32 Score=332.15 Aligned_cols=207 Identities=24% Similarity=0.341 Sum_probs=167.8
Q ss_pred eeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccC
Q 000979 603 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 682 (1202)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 682 (1202)
.++++|++++|. +++++|+|+||+|++||+++|+|||||||||||++|+|..+ +.+|+|.+++.
T Consensus 6 ~l~i~~l~~~y~------------~~~~il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~--p~~G~i~~~~~-- 69 (556)
T PRK11819 6 IYTMNRVSKVVP------------PKKQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDK--EFEGEARPAPG-- 69 (556)
T ss_pred EEEEeeEEEEeC------------CCCeeeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEecCC--
Confidence 588999999883 12468999999999999999999999999999999999876 45799998752
Q ss_pred CcccccceEEEeecCCCCCCCCCHHHHHHHHHH-cc------------CCCCCC--------------------HHHHHH
Q 000979 683 KQETFARISGYCEQNDIHSPFVTIYESLLFSAW-LR------------LSPEVD--------------------SETRKM 729 (1202)
Q Consensus 683 ~~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~-~~------------~~~~~~--------------------~~~~~~ 729 (1202)
..+|||+|++.+++.+||.||+.++.. .+ ...... ..+.+.
T Consensus 70 ------~~i~~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (556)
T PRK11819 70 ------IKVGYLPQEPQLDPEKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDS 143 (556)
T ss_pred ------CEEEEEecCCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHH
Confidence 358999999999999999999987531 00 000000 001134
Q ss_pred HHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEE
Q 000979 730 FIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVV 809 (1202)
Q Consensus 730 ~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi 809 (1202)
+++++++.+|+.. .+.. ++.|||||||||+|||+|+.+|++|||||||+|||+.++..+.+.|+++ +.|||
T Consensus 144 ~~~~~l~~~gl~~-~~~~-----~~~LSgGqkqrv~la~al~~~p~vlLLDEPt~~LD~~~~~~l~~~L~~~---~~tvi 214 (556)
T PRK11819 144 QLEIAMDALRCPP-WDAK-----VTKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLHDY---PGTVV 214 (556)
T ss_pred HHHHHHHhCCCCc-ccCc-----hhhcCHHHHHHHHHHHHHhCCCCEEEEcCCCCcCChHHHHHHHHHHHhC---CCeEE
Confidence 5778899999853 4544 3579999999999999999999999999999999999999999999886 24999
Q ss_pred EEecCCCHHHHHhcceEEEEecCCEEE-EEcCCC
Q 000979 810 CTIHQPSIDIFEAFDELFLMKRGGQEI-YVGPLG 842 (1202)
Q Consensus 810 ~~~H~~~~~~~~~~d~v~~l~~gG~~~-~~G~~~ 842 (1202)
++||+++ .+.+.+|++++|.+ |+++ |.|+.+
T Consensus 215 iisHd~~-~~~~~~d~i~~l~~-g~i~~~~g~~~ 246 (556)
T PRK11819 215 AVTHDRY-FLDNVAGWILELDR-GRGIPWEGNYS 246 (556)
T ss_pred EEeCCHH-HHHhhcCeEEEEeC-CEEEEecCCHH
Confidence 9999986 57788999999985 7876 778753
|
|
| >COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.98 E-value=2.6e-32 Score=256.45 Aligned_cols=191 Identities=25% Similarity=0.319 Sum_probs=162.3
Q ss_pred eEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCc-eEEEEEEEcCccC
Q 000979 604 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG-YITGNITISGYPK 682 (1202)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~-~~~G~i~~~g~~~ 682 (1202)
++.+||+... ++...|-++|++|.+||++-||||||||||||+..+.|...+. ..+|++++|+++.
T Consensus 3 l~l~nvsl~l-------------~g~cLLa~~n~Tia~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l 69 (213)
T COG4136 3 LCLKNVSLRL-------------PGSCLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRL 69 (213)
T ss_pred eeeeeeeecC-------------CCceEEEeeeEEecCCcEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCeec
Confidence 5667777443 3456899999999999999999999999999999999965432 5789999999987
Q ss_pred Cc-ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHH
Q 000979 683 KQ-ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQR 761 (1202)
Q Consensus 683 ~~-~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqr 761 (1202)
+. ...+|++|..+||+.+||.++|.+|+.|+. +.....+.|++.++..++..||.+..+.- +..||||||
T Consensus 70 ~~lPa~qRq~GiLFQD~lLFphlsVg~Nl~fAl----p~~~KG~aRr~~a~aAL~~~gL~g~f~~d-----P~tlSGGQr 140 (213)
T COG4136 70 DMLPAAQRQIGILFQDALLFPHLSVGQNLLFAL----PATLKGNARRNAANAALERSGLDGAFHQD-----PATLSGGQR 140 (213)
T ss_pred cccchhhhheeeeecccccccccccccceEEec----CcccccHHHHhhHHHHHHHhccchhhhcC-----hhhcCcchH
Confidence 64 345789999999999999999999999863 44555567778889999999999887764 357999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHH-HHHhCCCEEEEEecCCC
Q 000979 762 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR-NTVDTGRTVVCTIHQPS 816 (1202)
Q Consensus 762 qRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~-~~~~~g~tvi~~~H~~~ 816 (1202)
-||++-|+|+..|+.++||||+|.||..-+.++.+..- ++...|..+|.+|||..
T Consensus 141 ARvaL~R~Lla~Pk~lLLDEPFS~LD~ALR~qfR~wVFs~~r~agiPtv~VTHD~~ 196 (213)
T COG4136 141 ARVALLRALLAQPKALLLDEPFSRLDVALRDQFRQWVFSEVRAAGIPTVQVTHDLQ 196 (213)
T ss_pred HHHHHHHHHHhCcceeeeCCchhHHHHHHHHHHHHHHHHHHHhcCCCeEEEecccc
Confidence 99999999999999999999999999999999988764 44456999999999965
|
|
| >COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.98 E-value=3.1e-32 Score=272.56 Aligned_cols=220 Identities=26% Similarity=0.354 Sum_probs=173.2
Q ss_pred CceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCCccc---ccceEEEeecCC--CCC
Q 000979 627 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQET---FARISGYCEQND--IHS 701 (1202)
Q Consensus 627 ~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~---~~~~~~~v~q~~--~~~ 701 (1202)
..+++|+++|++|..|+++-|+|.||||||||+|+|+|... +.+|+|.++|.+++... ....++-|+|+| ..+
T Consensus 17 ~ek~~l~~~sL~I~~g~FvtViGsNGAGKSTlln~iaG~l~--~t~G~I~Idg~dVtk~~~~~RA~~larVfQdp~~gt~ 94 (263)
T COG1101 17 LEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLK--PTSGQILIDGVDVTKKSVAKRANLLARVFQDPLAGTA 94 (263)
T ss_pred hHHHHHhcCceeecCCceEEEEcCCCccHHHHHHHhhCccc--cCCceEEECceecccCCHHHHhhHHHHHhcchhhCCc
Confidence 45679999999999999999999999999999999999876 56899999999886532 223467789997 568
Q ss_pred CCCCHHHHHHHHHHccCCCCCCH---HHHHHHHHHHHHH--cCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCE
Q 000979 702 PFVTIYESLLFSAWLRLSPEVDS---ETRKMFIDEVMEL--VELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSI 776 (1202)
Q Consensus 702 ~~lTv~e~l~~~~~~~~~~~~~~---~~~~~~~~~~l~~--l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~i 776 (1202)
+.+|+.||+..+..-........ ..+++...+-++. +||++..++.+| -|||||||-++++.|-++.|+|
T Consensus 95 ~~lTieENl~la~~Rg~~rgl~~~ln~~~~~~f~~~l~~l~lgLenrL~~~ig-----lLSGGQRQalsL~MAtl~~pki 169 (263)
T COG1101 95 PELTIEENLALAESRGKKRGLSSALNERRRSSFRERLARLGLGLENRLSDRIG-----LLSGGQRQALSLLMATLHPPKI 169 (263)
T ss_pred ccccHHHHHHHHHhcCcccccchhhhHHHHHHHHHHHhhcccchhhhhcChhh-----hccchHHHHHHHHHHhcCCCcE
Confidence 99999999998754222222222 2333334444454 466777777765 4999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhcceEEEEecCCEEEEE--cCCCcc--chhHHHH
Q 000979 777 IFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYV--GPLGRH--SCHLISY 851 (1202)
Q Consensus 777 lllDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~--G~~~~~--~~~~~~~ 851 (1202)
|+|||-|++|||.++..|++.-.++.++ +.|.+++||.++ +..++-+|.++|+ +|++|.+ |+.... ..++...
T Consensus 170 LLLDEHTAALDPkta~~vm~lT~kiV~~~klTtlMVTHnm~-~Al~yG~RlImLh-~G~IvlDv~g~~k~~L~v~dli~~ 247 (263)
T COG1101 170 LLLDEHTAALDPKTAEFVMELTAKIVEEHKLTTLMVTHNME-DALDYGNRLIMLH-SGKIVLDVTGEEKASLTVLDLIQM 247 (263)
T ss_pred EEecchhhcCCcchHHHHHHHHHHHHHhcCCceEEEeccHH-HHHhhCCeEEEEe-CCeEEEEcccccccCCcHHHHHHH
Confidence 9999999999999999999999988654 789999999997 6889999999998 5899977 433221 2345566
Q ss_pred HhhC
Q 000979 852 FEAI 855 (1202)
Q Consensus 852 f~~~ 855 (1202)
|+.+
T Consensus 248 F~~~ 251 (263)
T COG1101 248 FEKI 251 (263)
T ss_pred HHHH
Confidence 6644
|
|
| >cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor | Back alignment and domain information |
|---|
Probab=99.98 E-value=5.5e-32 Score=297.78 Aligned_cols=192 Identities=21% Similarity=0.244 Sum_probs=156.0
Q ss_pred EEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEE-----------EcCccCCcc--c-cc--ceEEE
Q 000979 630 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIT-----------ISGYPKKQE--T-FA--RISGY 693 (1202)
Q Consensus 630 ~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~-----------~~g~~~~~~--~-~~--~~~~~ 693 (1202)
.+|+|+| .+++||+++|+|||||||||||++|+|..+ +.+|+|. ++|.+.... . .+ ..++|
T Consensus 15 ~~l~~i~-~i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~--p~~G~I~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~ 91 (255)
T cd03236 15 FKLHRLP-VPREGQVLGLVGPNGIGKSTALKILAGKLK--PNLGKFDDPPDWDEILDEFRGSELQNYFTKLLEGDVKVIV 91 (255)
T ss_pred hhhhcCC-CCCCCCEEEEECCCCCCHHHHHHHHhCCcC--CCCceEeeccccchhhhhccCchhhhhhHHhhhcccceee
Confidence 4899999 599999999999999999999999999876 4589985 778765321 1 11 23689
Q ss_pred eecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhC
Q 000979 694 CEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVAN 773 (1202)
Q Consensus 694 v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~aL~~~ 773 (1202)
++|+...++ .++.+++.+.. . ....+..++++++.+++.+..+.. ++.||||||||++|||+|+.+
T Consensus 92 ~~~~~~~~~-~~~~~~i~~~l--~------~~~~~~~~~~~l~~~gl~~~~~~~-----~~~LS~G~~qrv~laral~~~ 157 (255)
T cd03236 92 KPQYVDLIP-KAVKGKVGELL--K------KKDERGKLDELVDQLELRHVLDRN-----IDQLSGGELQRVAIAAALARD 157 (255)
T ss_pred ecchhccCc-hHHHHHHHHHh--c------hhHHHHHHHHHHHHcCCchhhcCC-----hhhCCHHHHHHHHHHHHHHhC
Confidence 999887777 47888877642 1 112234578999999998766654 357999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCCEEEEEcCC
Q 000979 774 PSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPL 841 (1202)
Q Consensus 774 p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G~~ 841 (1202)
|++++|||||++||+.++..+.+.|++++++|+|||+++|+++ .+.+.||++++|+ |++.+.|-.
T Consensus 158 p~illlDEPts~LD~~~~~~l~~~l~~l~~~~~tIIiiSHd~~-~~~~~ad~i~~l~--~~~~~~~~~ 222 (255)
T cd03236 158 ADFYFFDEPSSYLDIKQRLNAARLIRELAEDDNYVLVVEHDLA-VLDYLSDYIHCLY--GEPGAYGVV 222 (255)
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhCCEEEEEC--CCCCcceee
Confidence 9999999999999999999999999999877999999999986 4667899999995 456665544
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. |
| >COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.8e-31 Score=287.50 Aligned_cols=225 Identities=22% Similarity=0.310 Sum_probs=186.1
Q ss_pred eeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCc---eEEEEEEEcC
Q 000979 603 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG---YITGNITISG 679 (1202)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~---~~~G~i~~~g 679 (1202)
-++.+|++..+... .+...++++|||++++||.+||+|.||||||-..+.+.|..++. ..+|+|.++|
T Consensus 6 lL~v~nLsV~f~~~---------~~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G 76 (534)
T COG4172 6 LLSIRNLSVAFHQE---------GGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDG 76 (534)
T ss_pred ceeeeccEEEEecC---------CcceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcC
Confidence 36788888777532 35678999999999999999999999999999999998865431 3468999999
Q ss_pred ccCCc---cccc----ceEEEeecCCC--CCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccC
Q 000979 680 YPKKQ---ETFA----RISGYCEQNDI--HSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGL 750 (1202)
Q Consensus 680 ~~~~~---~~~~----~~~~~v~q~~~--~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~ 750 (1202)
.+.-. ...+ ..|++++|+|. +.|..|+.+.+.-..++. ...+.++.++++.++++.+|+.+...+....
T Consensus 77 ~dll~~se~~lr~iRG~~I~MIFQEPMtSLNPl~tIg~Qi~E~l~~H--rg~~~~~Ar~r~lelL~~VgI~~p~~rl~~y 154 (534)
T COG4172 77 EDLLAASERQLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRLH--RGLSRAAARARALELLELVGIPEPEKRLDAY 154 (534)
T ss_pred hhhhcCCHHHHhhhcccceEEEecccccccCcHhHHHHHHHHHHHHH--hcccHHHHHHHHHHHHHHcCCCchhhhhhhC
Confidence 87532 2222 36899999984 567778887776554433 3556667778899999999999887776555
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhcceEEEE
Q 000979 751 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLM 829 (1202)
Q Consensus 751 ~~~~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l 829 (1202)
| ++|||||||||.||+||+.+|++|+.||||++||..-+.+|+++|+++.++ |..++++|||+. -+.+++|||++|
T Consensus 155 P--HeLSGGqRQRVMIAMALan~P~lLIADEPTTALDVtvQaQIL~Ll~~Lq~~~gMa~lfITHDL~-iVr~~ADrV~VM 231 (534)
T COG4172 155 P--HELSGGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQAELGMAILFITHDLG-IVRKFADRVYVM 231 (534)
T ss_pred C--cccCcchhhHHHHHHHHcCCCCeEeecCCcchhhhhhHHHHHHHHHHHHHHhCcEEEEEeccHH-HHHHhhhhEEEE
Confidence 4 689999999999999999999999999999999999999999999999755 999999999997 377889999999
Q ss_pred ecCCEEEEEcCCC
Q 000979 830 KRGGQEIYVGPLG 842 (1202)
Q Consensus 830 ~~gG~~~~~G~~~ 842 (1202)
.+ |+++..|+.+
T Consensus 232 ~~-G~ivE~~~t~ 243 (534)
T COG4172 232 QH-GEIVETGTTE 243 (534)
T ss_pred ec-cEEeecCcHH
Confidence 85 8999999864
|
|
| >TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.8e-31 Score=328.31 Aligned_cols=207 Identities=25% Similarity=0.352 Sum_probs=164.8
Q ss_pred eeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccC
Q 000979 603 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 682 (1202)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 682 (1202)
-++++|++++|+ +++++|+|+||++++||+++|+|||||||||||++|+|..+ +.+|+|.+++.
T Consensus 4 ~i~~~nls~~~~------------~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~--p~~G~i~~~~~-- 67 (552)
T TIGR03719 4 IYTMNRVSKVVP------------PKKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDK--EFNGEARPAPG-- 67 (552)
T ss_pred EEEEeeEEEecC------------CCCeeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEecCC--
Confidence 478899999873 12458999999999999999999999999999999999876 45799988752
Q ss_pred CcccccceEEEeecCCCCCCCCCHHHHHHHHHHc-cC-----------CCCCCHH---------------------HHHH
Q 000979 683 KQETFARISGYCEQNDIHSPFVTIYESLLFSAWL-RL-----------SPEVDSE---------------------TRKM 729 (1202)
Q Consensus 683 ~~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~-~~-----------~~~~~~~---------------------~~~~ 729 (1202)
..+|||+|++.+++.+||+||+.++... +. ......+ +...
T Consensus 68 ------~~i~~v~Q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (552)
T TIGR03719 68 ------IKVGYLPQEPQLDPTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDR 141 (552)
T ss_pred ------CEEEEEeccCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHH
Confidence 3589999999999999999999875311 00 0000010 0113
Q ss_pred HHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEE
Q 000979 730 FIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVV 809 (1202)
Q Consensus 730 ~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi 809 (1202)
+++++++.+++.. .+.. ++.|||||||||+|||+|+.+|++|||||||++||+.++..+.+.|+++ +.|||
T Consensus 142 ~~~~~l~~~~l~~-~~~~-----~~~LSgGqkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~~L~~~---~~tvI 212 (552)
T TIGR03719 142 KLEIAMDALRCPP-WDAD-----VTKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQEY---PGTVV 212 (552)
T ss_pred HHHHHHhhCCCCc-ccCc-----hhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHHHHHhC---CCeEE
Confidence 4566777777743 3443 3579999999999999999999999999999999999999999999875 35999
Q ss_pred EEecCCCHHHHHhcceEEEEecCCEEE-EEcCCC
Q 000979 810 CTIHQPSIDIFEAFDELFLMKRGGQEI-YVGPLG 842 (1202)
Q Consensus 810 ~~~H~~~~~~~~~~d~v~~l~~gG~~~-~~G~~~ 842 (1202)
++||+++ .+...||++++|.+ |+++ +.|+.+
T Consensus 213 iisHd~~-~~~~~~d~v~~l~~-g~i~~~~g~~~ 244 (552)
T TIGR03719 213 AVTHDRY-FLDNVAGWILELDR-GRGIPWEGNYS 244 (552)
T ss_pred EEeCCHH-HHHhhcCeEEEEEC-CEEEEecCCHH
Confidence 9999986 57788999999985 7865 778763
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. |
| >COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=5e-30 Score=287.98 Aligned_cols=221 Identities=19% Similarity=0.307 Sum_probs=180.5
Q ss_pred eeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccC
Q 000979 603 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 682 (1202)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 682 (1202)
-++++|++..-+ .+.+.++||||++++||+++|.|-.|-|-+.|+.+|+|..+ +.+|+|.++|.++
T Consensus 257 vL~V~~L~v~~~------------~~~~~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~--~~~G~I~l~G~~v 322 (501)
T COG3845 257 VLEVEDLSVKDR------------RGVTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRK--PASGRILLNGKDV 322 (501)
T ss_pred EEEEeeeEeecC------------CCCceeeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCCCc--cCCceEEECCEec
Confidence 367788775432 12356999999999999999999999999999999999875 3359999999986
Q ss_pred -C---cc-cccceEEEeecCC---CCCCCCCHHHHHHHHHHccC----CCCCCHHHHHHHHHHHHHHcCCCccccccccC
Q 000979 683 -K---QE-TFARISGYCEQND---IHSPFVTIYESLLFSAWLRL----SPEVDSETRKMFIDEVMELVELNPLRQSLVGL 750 (1202)
Q Consensus 683 -~---~~-~~~~~~~~v~q~~---~~~~~lTv~e~l~~~~~~~~----~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~ 750 (1202)
. .. ..+..++|||.|. .+.+.+|+.||+.+...-+. ..-.+..+.++...++++.++.....-.
T Consensus 323 ~~~~~~~~~r~~G~~~VPedR~~~Glv~~~sl~eN~vL~~~~~~~~~~~g~l~~~~i~~~a~~li~~fdVr~~~~~---- 398 (501)
T COG3845 323 LGRLSPRERRRLGLAYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFARELIEEFDVRAPSPD---- 398 (501)
T ss_pred cccCCHHHHHhcCCccCChhhccCccccCccHHHHhhhhhccccccccccccCHHHHHHHHHHHHHHcCccCCCCC----
Confidence 2 22 2345689999986 46788999999987654221 1123445667778899999988632211
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEe
Q 000979 751 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 830 (1202)
Q Consensus 751 ~~~~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~ 830 (1202)
...+.||||++||+-+||+|.++|++|+..+||.|||..+...+.+.|.+.++.|+.|++++-+++ ++++++||+.+|.
T Consensus 399 ~~a~~LSGGNqQK~IlaREl~~~p~lLI~~qPTrGLDvgA~~~I~~~l~e~r~~G~AVLLiS~dLD-Eil~lsDrIaVi~ 477 (501)
T COG3845 399 APARSLSGGNQQKLILARELARRPDLLIAAQPTRGLDVGAIEFIHERLLELRDAGKAVLLISEDLD-EILELSDRIAVIY 477 (501)
T ss_pred cchhhcCCcceehhhhhhhhccCCCEEEEcCCCccccHHHHHHHHHHHHHHHhcCCEEEEEehhHH-HHHHhhheeeeee
Confidence 124679999999999999999999999999999999999999999999999999999999999997 8999999999999
Q ss_pred cCCEEEEEcCCCc
Q 000979 831 RGGQEIYVGPLGR 843 (1202)
Q Consensus 831 ~gG~~~~~G~~~~ 843 (1202)
+ |+++...++++
T Consensus 478 ~-Gri~~~~~~~~ 489 (501)
T COG3845 478 E-GRIVGIVPPEE 489 (501)
T ss_pred C-Cceeccccccc
Confidence 5 89999888865
|
|
| >cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.1e-31 Score=273.59 Aligned_cols=156 Identities=23% Similarity=0.320 Sum_probs=130.8
Q ss_pred ceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCCcccccceEEEeecCCCCCCCCCHH
Q 000979 628 KLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIY 707 (1202)
Q Consensus 628 ~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~lTv~ 707 (1202)
++.+++++ +++++||+++|+||||||||||+|+|+|... +.+|+|.++|.+ ++|++|+..
T Consensus 12 ~~~~l~~~-~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~---------i~~~~q~~~-------- 71 (177)
T cd03222 12 VFFLLVEL-GVVKEGEVIGIVGPNGTGKTTAVKILAGQLI--PNGDNDEWDGIT---------PVYKPQYID-------- 71 (177)
T ss_pred CEEEEccC-cEECCCCEEEEECCCCChHHHHHHHHHcCCC--CCCcEEEECCEE---------EEEEcccCC--------
Confidence 35678885 8999999999999999999999999999876 458999999842 678877421
Q ss_pred HHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCC
Q 000979 708 ESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 787 (1202)
Q Consensus 708 e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD 787 (1202)
||||||||++|||+|+.+|++++|||||+|||
T Consensus 72 ------------------------------------------------LSgGq~qrv~laral~~~p~lllLDEPts~LD 103 (177)
T cd03222 72 ------------------------------------------------LSGGELQRVAIAAALLRNATFYLFDEPSAYLD 103 (177)
T ss_pred ------------------------------------------------CCHHHHHHHHHHHHHhcCCCEEEEECCcccCC
Confidence 89999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCC-CEEEEEecCCCHHHHHhcceEEEEecCCEEEEE--cCCCccchhHHHHHh
Q 000979 788 ARAAAIVMRTVRNTVDTG-RTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYV--GPLGRHSCHLISYFE 853 (1202)
Q Consensus 788 ~~~~~~v~~~l~~~~~~g-~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~--G~~~~~~~~~~~~f~ 853 (1202)
+.++..+.+.++++++++ .|+|++||+++ .+.+.+|++++|+++ -.++. |+|....+.+-.|+.
T Consensus 104 ~~~~~~l~~~l~~~~~~~~~tiiivsH~~~-~~~~~~d~i~~l~~~-~~~~~~~~~~~~~~~~~~~~~~ 170 (177)
T cd03222 104 IEQRLNAARAIRRLSEEGKKTALVVEHDLA-VLDYLSDRIHVFEGE-PGVYGIASQPKGTREGINRFLR 170 (177)
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEEEECCHH-HHHHhCCEEEEEcCC-CccceeccCCcchhHHHHHHHH
Confidence 999999999999987665 99999999986 567789999999864 44544 777543344445553
|
RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. |
| >cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.7e-31 Score=272.01 Aligned_cols=154 Identities=23% Similarity=0.305 Sum_probs=127.3
Q ss_pred ceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCCcccccceEEEeecCCCCCCCCCHH
Q 000979 628 KLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIY 707 (1202)
Q Consensus 628 ~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~lTv~ 707 (1202)
.+.+|+|+||++++||+++|+||||||||||||+|.+ .+|++.++|.... ..++.++|++|
T Consensus 7 ~~~~l~~isl~i~~G~~~~l~G~nG~GKSTLl~~il~------~~G~v~~~~~~~~--~~~~~~~~~~q----------- 67 (176)
T cd03238 7 NVHNLQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGLY------ASGKARLISFLPK--FSRNKLIFIDQ----------- 67 (176)
T ss_pred eeeeecceEEEEcCCCEEEEECCCCCCHHHHHHHHhh------cCCcEEECCcccc--cccccEEEEhH-----------
Confidence 4568999999999999999999999999999999953 2678888876321 12334677766
Q ss_pred HHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCcc-ccccccCCCCCCCCHHHHHHHHHHHHHhhC--CCEEEEeCCCC
Q 000979 708 ESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPL-RQSLVGLPGVSGLSTEQRKRLTIAVELVAN--PSIIFMDEPTS 784 (1202)
Q Consensus 708 e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~-~~~~~~~~~~~~LSgGqrqRv~ia~aL~~~--p~illlDEPts 784 (1202)
.++++.+++... .+.. .+.||||||||++|||||+.+ |++++|||||+
T Consensus 68 ------------------------~~~l~~~~L~~~~~~~~-----~~~LSgGq~qrl~laral~~~~~p~llLlDEPt~ 118 (176)
T cd03238 68 ------------------------LQFLIDVGLGYLTLGQK-----LSTLSGGELQRVKLASELFSEPPGTLFILDEPST 118 (176)
T ss_pred ------------------------HHHHHHcCCCccccCCC-----cCcCCHHHHHHHHHHHHHhhCCCCCEEEEeCCcc
Confidence 134566777542 3443 357999999999999999999 99999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEec
Q 000979 785 GLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKR 831 (1202)
Q Consensus 785 gLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~ 831 (1202)
|||+.++..+.+.|+++++.|+|||++||+++ . .+.+|++++|.+
T Consensus 119 ~LD~~~~~~l~~~l~~~~~~g~tvIivSH~~~-~-~~~~d~i~~l~~ 163 (176)
T cd03238 119 GLHQQDINQLLEVIKGLIDLGNTVILIEHNLD-V-LSSADWIIDFGP 163 (176)
T ss_pred cCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-H-HHhCCEEEEECC
Confidence 99999999999999998777999999999985 3 478999999964
|
Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. |
| >TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei | Back alignment and domain information |
|---|
Probab=99.97 E-value=3e-31 Score=330.74 Aligned_cols=200 Identities=19% Similarity=0.274 Sum_probs=160.2
Q ss_pred ceeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCcc
Q 000979 602 HSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP 681 (1202)
Q Consensus 602 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 681 (1202)
..++++||++.++ +++.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|++.+++
T Consensus 450 ~~i~~~nv~~~~~------------~~~~il~~isl~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~--~~~G~i~~~~-- 513 (659)
T TIGR00954 450 NGIKFENIPLVTP------------NGDVLIESLSFEVPSGNHLLICGPNGCGKSSLFRILGELWP--VYGGRLTKPA-- 513 (659)
T ss_pred CeEEEEeeEEECC------------CCCeeeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCCeEeecC--
Confidence 4589999999874 12358999999999999999999999999999999999865 3468887753
Q ss_pred CCcccccceEEEeecCCCCCCCCCHHHHHHHHHHccC--CCCCCHHHHHHHHHHHHHHcCCCccccccccC----CCCCC
Q 000979 682 KKQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRL--SPEVDSETRKMFIDEVMELVELNPLRQSLVGL----PGVSG 755 (1202)
Q Consensus 682 ~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~--~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~----~~~~~ 755 (1202)
++.++||+|++.+++. |++||+.++..... ..... ++.++++++.+++.+..++..|. .....
T Consensus 514 ------~~~i~~v~Q~~~l~~~-tv~eni~~~~~~~~~~~~~~~----~~~i~~~l~~~~l~~~~~~~~g~~~~~~~~~~ 582 (659)
T TIGR00954 514 ------KGKLFYVPQRPYMTLG-TLRDQIIYPDSSEDMKRRGLS----DKDLEQILDNVQLTHILEREGGWSAVQDWMDV 582 (659)
T ss_pred ------CCcEEEECCCCCCCCc-CHHHHHhcCCChhhhhccCCC----HHHHHHHHHHcCCHHHHhhcCCcccccccccC
Confidence 4568999999988876 99999987532110 01111 23467889999987755443211 01357
Q ss_pred CCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCC
Q 000979 756 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGG 833 (1202)
Q Consensus 756 LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG 833 (1202)
||||||||++|||||+++|++++|||||+|||+.++..+.+.+++ .|+|+|+++|+++ ..+.+|++++|+.+|
T Consensus 583 LSgGqkQRl~iARal~~~p~illLDEpts~LD~~~~~~l~~~l~~---~~~tvI~isH~~~--~~~~~d~il~l~~~g 655 (659)
T TIGR00954 583 LSGGEKQRIAMARLFYHKPQFAILDECTSAVSVDVEGYMYRLCRE---FGITLFSVSHRKS--LWKYHEYLLYMDGRG 655 (659)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHH---cCCEEEEEeCchH--HHHhCCEEEEEeCCC
Confidence 999999999999999999999999999999999999999998876 3899999999986 468899999997544
|
|
| >COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.4e-30 Score=267.80 Aligned_cols=227 Identities=22% Similarity=0.291 Sum_probs=187.8
Q ss_pred eeEEeeeEEEEecCch----hh------h-cccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceE
Q 000979 603 SLTFDEVVYSVDMPEE----MK------V-QGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYI 671 (1202)
Q Consensus 603 ~~~~~~~~~~~~~~~~----~~------~-~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~ 671 (1202)
.+.++||+..++.... .+ . .........+|+||||++++||.+||+|+||||||||||+|+|..+ |.
T Consensus 3 ~I~~~~V~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aL~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~--Pt 80 (249)
T COG1134 3 VIKVSNVSKKFRIYHEKSYSLKKRLKGLAKGGRKVAEFWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYK--PT 80 (249)
T ss_pred EEEeeceeEEEecchhhhhhHHHHHHHHhcCCCCcceEEEecCceEEEeCCCEEEEECCCCCcHHHHHHHHhCccC--CC
Confidence 4677888877765531 00 0 0113456789999999999999999999999999999999999877 56
Q ss_pred EEEEEEcCccCCcccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCC
Q 000979 672 TGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLP 751 (1202)
Q Consensus 672 ~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~ 751 (1202)
+|+|.++|.-... ..-.-.+.|.+|.+||+.+-+.+. ..+.++.+++++++++..+|.+..|.++
T Consensus 81 ~G~v~v~G~v~~l---------i~lg~Gf~pelTGreNi~l~~~~~---G~~~~ei~~~~~eIieFaELG~fi~~Pv--- 145 (249)
T COG1134 81 SGKVKVTGKVAPL---------IELGAGFDPELTGRENIYLRGLIL---GLTRKEIDEKVDEIIEFAELGDFIDQPV--- 145 (249)
T ss_pred CceEEEcceEehh---------hhcccCCCcccchHHHHHHHHHHh---CccHHHHHHHHHHHHHHHHHHHHhhCch---
Confidence 8999999964211 111223457799999999877654 4567778888999999999999988875
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEec
Q 000979 752 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKR 831 (1202)
Q Consensus 752 ~~~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~ 831 (1202)
+.+|.||+-|++.|.|...+|+||++||-.+--|+.=++.-.+.++++.++++|+|+++|+++ .+.+.|||+++|++
T Consensus 146 --ktYSSGM~aRLaFsia~~~~pdILllDEvlavGD~~F~~K~~~rl~e~~~~~~tiv~VSHd~~-~I~~~Cd~~i~l~~ 222 (249)
T COG1134 146 --KTYSSGMYARLAFSVATHVEPDILLLDEVLAVGDAAFQEKCLERLNELVEKNKTIVLVSHDLG-AIKQYCDRAIWLEH 222 (249)
T ss_pred --hhccHHHHHHHHHhhhhhcCCCEEEEehhhhcCCHHHHHHHHHHHHHHHHcCCEEEEEECCHH-HHHHhcCeeEEEeC
Confidence 679999999999999999999999999999999999999999999999888899999999997 58999999999985
Q ss_pred CCEEEEEcCCCccchhHHHHHhh
Q 000979 832 GGQEIYVGPLGRHSCHLISYFEA 854 (1202)
Q Consensus 832 gG~~~~~G~~~~~~~~~~~~f~~ 854 (1202)
|++.+.|.+ +++.+++..
T Consensus 223 -G~i~~~G~~----~~vi~~Y~~ 240 (249)
T COG1134 223 -GQIRMEGSP----EEVIPAYEE 240 (249)
T ss_pred -CEEEEcCCH----HHHHHHHHH
Confidence 899999998 456666654
|
|
| >cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.6e-31 Score=263.01 Aligned_cols=142 Identities=27% Similarity=0.412 Sum_probs=126.9
Q ss_pred eEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCC
Q 000979 604 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 683 (1202)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 683 (1202)
++++|+++.|. +..+|+++||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.
T Consensus 1 l~~~~l~~~~~-------------~~~~l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~--~~~G~i~~~~~--- 62 (144)
T cd03221 1 IELENLSKTYG-------------GKLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELE--PDEGIVTWGST--- 62 (144)
T ss_pred CEEEEEEEEEC-------------CceEEEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCCCC--CCceEEEECCe---
Confidence 35788888763 1258999999999999999999999999999999999876 45899999983
Q ss_pred cccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHH
Q 000979 684 QETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKR 763 (1202)
Q Consensus 684 ~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqR 763 (1202)
+.++|++| ||+||+||
T Consensus 63 -----~~i~~~~~-----------------------------------------------------------lS~G~~~r 78 (144)
T cd03221 63 -----VKIGYFEQ-----------------------------------------------------------LSGGEKMR 78 (144)
T ss_pred -----EEEEEEcc-----------------------------------------------------------CCHHHHHH
Confidence 46789888 89999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEec
Q 000979 764 LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKR 831 (1202)
Q Consensus 764 v~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~ 831 (1202)
++|||||+.+|++++|||||+|||+.++..+.+.|+++ ++|+|++||+++ ++.+.+|++++|++
T Consensus 79 v~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~---~~til~~th~~~-~~~~~~d~v~~l~~ 142 (144)
T cd03221 79 LALAKLLLENPNLLLLDEPTNHLDLESIEALEEALKEY---PGTVILVSHDRY-FLDQVATKIIELED 142 (144)
T ss_pred HHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHc---CCEEEEEECCHH-HHHHhCCEEEEEeC
Confidence 99999999999999999999999999999999999876 479999999986 56788999999985
|
EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. |
| >KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.5e-30 Score=292.40 Aligned_cols=202 Identities=19% Similarity=0.245 Sum_probs=155.5
Q ss_pred ceeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCcc
Q 000979 602 HSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP 681 (1202)
Q Consensus 602 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 681 (1202)
.-+.++||+|.|+. +-.++++++|-+.+++.+|+|||||||||||||++.|... +..|.+.-.-+.
T Consensus 388 pvi~~~nv~F~y~~------------~~~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~--p~~G~vs~~~H~ 453 (614)
T KOG0927|consen 388 PVIMVQNVSFGYSD------------NPMIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQ--PTIGMVSRHSHN 453 (614)
T ss_pred CeEEEeccccCCCC------------cchhhhhhhcccCcccceeEecCCCCchhhhHHHHhhccc--cccccccccccc
Confidence 45789999998852 1257999999999999999999999999999999999876 456776543322
Q ss_pred CCcccccceEEEeecC--CCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHH
Q 000979 682 KKQETFARISGYCEQN--DIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTE 759 (1202)
Q Consensus 682 ~~~~~~~~~~~~v~q~--~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgG 759 (1202)
.+++..|+ +.+.-..++-|++.=.. ..+.+.+.+..++..+||....+.. ..+.||+|
T Consensus 454 --------~~~~y~Qh~~e~ldl~~s~le~~~~~~--------~~~~~~e~~r~ilgrfgLtgd~q~~----p~~~LS~G 513 (614)
T KOG0927|consen 454 --------KLPRYNQHLAEQLDLDKSSLEFMMPKF--------PDEKELEEMRSILGRFGLTGDAQVV----PMSQLSDG 513 (614)
T ss_pred --------cchhhhhhhHhhcCcchhHHHHHHHhc--------cccchHHHHHHHHHHhCCCcccccc----chhhcccc
Confidence 12233333 22233456667654221 1122345578899999998544432 25689999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCCEEEEEc
Q 000979 760 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVG 839 (1202)
Q Consensus 760 qrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G 839 (1202)
||+||..|+.++..|.+|+|||||+|||..+...+-+.|.++ .-+||+++||... +-+.++++.+..+++...+.|
T Consensus 514 qr~rVlFa~l~~kqP~lLlLDEPtnhLDi~tid~laeaiNe~---~Ggvv~vSHDfrl-I~qVaeEi~~c~~~~~~~~~G 589 (614)
T KOG0927|consen 514 QRRRVLFARLAVKQPHLLLLDEPTNHLDIETIDALAEAINEF---PGGVVLVSHDFRL-ISQVAEEIWVCENGTVTKWDG 589 (614)
T ss_pred cchhHHHHHHHhcCCcEEEecCCCcCCCchhHHHHHHHHhcc---CCceeeeechhhH-HHHHHHHhHhhccCceeecCc
Confidence 999999999999999999999999999999999999999765 3489999999874 778899999999888888888
Q ss_pred CC
Q 000979 840 PL 841 (1202)
Q Consensus 840 ~~ 841 (1202)
..
T Consensus 590 ~i 591 (614)
T KOG0927|consen 590 DI 591 (614)
T ss_pred cH
Confidence 74
|
|
| >PLN03232 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.3e-30 Score=350.46 Aligned_cols=205 Identities=23% Similarity=0.339 Sum_probs=165.9
Q ss_pred ceeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCcc
Q 000979 602 HSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP 681 (1202)
Q Consensus 602 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 681 (1202)
..++++|++|+|+.. .++++|+|+|+++++||.++|+||||||||||+++|.|..+ +.+|++.
T Consensus 613 ~~I~~~~vsF~y~~~----------~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~--~~~G~i~----- 675 (1495)
T PLN03232 613 PAISIKNGYFSWDSK----------TSKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELS--HAETSSV----- 675 (1495)
T ss_pred CcEEEEeeEEEcCCC----------CCCceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCc--ccCCCEE-----
Confidence 369999999999621 12458999999999999999999999999999999999876 3455442
Q ss_pred CCcccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCC-------CccccccccCCCCC
Q 000979 682 KKQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVEL-------NPLRQSLVGLPGVS 754 (1202)
Q Consensus 682 ~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l-------~~~~~~~~~~~~~~ 754 (1202)
..++.++||+|++.+++ .|++|||.|+. ..+++ +.+++++..++ .+..++.+|..|.
T Consensus 676 ----~~~~~Iayv~Q~p~Lf~-gTIreNI~fg~------~~~~e----~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G~- 739 (1495)
T PLN03232 676 ----VIRGSVAYVPQVSWIFN-ATVRENILFGS------DFESE----RYWRAIDVTALQHDLDLLPGRDLTEIGERGV- 739 (1495)
T ss_pred ----EecCcEEEEcCcccccc-ccHHHHhhcCC------ccCHH----HHHHHHHHhCCHHHHHhCCCCCCceecCCCc-
Confidence 24567999999999886 69999999863 12222 24556665554 3445678887654
Q ss_pred CCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHH-HHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCC
Q 000979 755 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT-VRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGG 833 (1202)
Q Consensus 755 ~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~-l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG 833 (1202)
.||||||||++||||+.++|+|++||||||+||+++++.+.+. ++.. .+|+|+|++||+++ ....+|+|++|+ +|
T Consensus 740 ~LSGGQkQRIaLARAly~~~~IlLLDEptSaLD~~t~~~I~~~~l~~~-l~~kT~IlvTH~~~--~l~~aD~Ii~L~-~G 815 (1495)
T PLN03232 740 NISGGQKQRVSMARAVYSNSDIYIFDDPLSALDAHVAHQVFDSCMKDE-LKGKTRVLVTNQLH--FLPLMDRIILVS-EG 815 (1495)
T ss_pred ccCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhh-hcCCEEEEEECChh--hHHhCCEEEEEe-CC
Confidence 5999999999999999999999999999999999999988765 5543 36899999999985 578899999998 58
Q ss_pred EEEEEcCCCc
Q 000979 834 QEIYVGPLGR 843 (1202)
Q Consensus 834 ~~~~~G~~~~ 843 (1202)
+++..|+.++
T Consensus 816 ~i~~~Gt~~e 825 (1495)
T PLN03232 816 MIKEEGTFAE 825 (1495)
T ss_pred EEEEecCHHH
Confidence 9999998643
|
|
| >PLN03130 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.6e-30 Score=349.07 Aligned_cols=204 Identities=22% Similarity=0.344 Sum_probs=167.4
Q ss_pred ceeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEE-EEEEEcCc
Q 000979 602 HSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIT-GNITISGY 680 (1202)
Q Consensus 602 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~-G~i~~~g~ 680 (1202)
..++++|++|+|+.. .++.+|+|+|+++++||.++|+||||||||||+++|.|..+ +.+ |+|.+
T Consensus 613 ~~I~~~nvsf~y~~~----------~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~--~~~GG~I~l--- 677 (1622)
T PLN03130 613 PAISIKNGYFSWDSK----------AERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELP--PRSDASVVI--- 677 (1622)
T ss_pred CceEEEeeEEEccCC----------CCCceeeceeEEecCCCEEEEECCCCCCHHHHHHHHHHhhc--cCCCceEEE---
Confidence 369999999999621 12458999999999999999999999999999999999876 457 78864
Q ss_pred cCCcccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCC-------ccccccccCCCC
Q 000979 681 PKKQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELN-------PLRQSLVGLPGV 753 (1202)
Q Consensus 681 ~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-------~~~~~~~~~~~~ 753 (1202)
++.++||+|++.++. .|++|||.|+. ..++ ++.+++++..+|. +-.++.+|..|.
T Consensus 678 -------~~~Iayv~Q~p~Lfn-gTIreNI~fg~------~~d~----e~y~~vl~a~~L~~di~~LP~Gd~T~IGe~G~ 739 (1622)
T PLN03130 678 -------RGTVAYVPQVSWIFN-ATVRDNILFGS------PFDP----ERYERAIDVTALQHDLDLLPGGDLTEIGERGV 739 (1622)
T ss_pred -------cCeEEEEcCccccCC-CCHHHHHhCCC------cccH----HHHHHHHHHhCcHHHHHhCCCcccccccCCCC
Confidence 456899999999886 79999999863 1222 2356666666654 345777887654
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHH-HHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecC
Q 000979 754 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR-TVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 832 (1202)
Q Consensus 754 ~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~-~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~g 832 (1202)
.||||||||++|||||.++|+|++||||||+||+++++.+.+ .++.+ .+|+|+|++||+++ ....+|+|++|+ +
T Consensus 740 -~LSGGQKQRIaLARAly~~~~IlLLDEptSALD~~~~~~I~~~~l~~~-l~~kTvIlVTH~l~--~l~~aD~Ii~L~-~ 814 (1622)
T PLN03130 740 -NISGGQKQRVSMARAVYSNSDVYIFDDPLSALDAHVGRQVFDKCIKDE-LRGKTRVLVTNQLH--FLSQVDRIILVH-E 814 (1622)
T ss_pred -CCCHHHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHhhHH-hcCCEEEEEECCHh--HHHhCCEEEEEe-C
Confidence 599999999999999999999999999999999999988764 56654 35899999999985 578899999998 5
Q ss_pred CEEEEEcCCCc
Q 000979 833 GQEIYVGPLGR 843 (1202)
Q Consensus 833 G~~~~~G~~~~ 843 (1202)
|+++..|+.++
T Consensus 815 G~i~e~Gt~~e 825 (1622)
T PLN03130 815 GMIKEEGTYEE 825 (1622)
T ss_pred CEEEEeCCHHH
Confidence 89999998643
|
|
| >COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.5e-30 Score=256.27 Aligned_cols=178 Identities=27% Similarity=0.334 Sum_probs=155.6
Q ss_pred CceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCCc--ccccceEEEeecCCCCCCCC
Q 000979 627 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ--ETFARISGYCEQNDIHSPFV 704 (1202)
Q Consensus 627 ~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~--~~~~~~~~~v~q~~~~~~~l 704 (1202)
+...++.++||++.+||.+-|.||||||||||||+|+|... +..|+|.++|.++.. +.+++.+-|+-..+.+-+.+
T Consensus 13 ~e~~lf~~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~--p~~G~v~~~~~~i~~~~~~~~~~l~yLGH~~giK~eL 90 (209)
T COG4133 13 GERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLR--PDAGEVYWQGEPIQNVRESYHQALLYLGHQPGIKTEL 90 (209)
T ss_pred CcceeecceeEEEcCCCEEEEECCCCCcHHHHHHHHHcccC--CCCCeEEecCCCCccchhhHHHHHHHhhccccccchh
Confidence 45678999999999999999999999999999999999877 458999999988754 22456678888889999999
Q ss_pred CHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCC
Q 000979 705 TIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTS 784 (1202)
Q Consensus 705 Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~illlDEPts 784 (1202)
||+|||.|-..+... .+ ...+.++++.+||.+..|.+++ .||-||||||+|||-+++.+++.+||||++
T Consensus 91 Ta~ENL~F~~~~~~~--~~----~~~i~~Al~~vgL~g~~dlp~~-----~LSAGQqRRvAlArL~ls~~pLWiLDEP~t 159 (209)
T COG4133 91 TALENLHFWQRFHGS--GN----AATIWEALAQVGLAGLEDLPVG-----QLSAGQQRRVALARLWLSPAPLWILDEPFT 159 (209)
T ss_pred hHHHHHHHHHHHhCC--Cc----hhhHHHHHHHcCcccccccchh-----hcchhHHHHHHHHHHHcCCCCceeecCccc
Confidence 999999998765432 11 2337889999999999998864 799999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCH
Q 000979 785 GLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSI 817 (1202)
Q Consensus 785 gLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~ 817 (1202)
+||.+....+-..+..-+.+|-.||.+||||..
T Consensus 160 aLDk~g~a~l~~l~~~H~~~GGiVllttHq~l~ 192 (209)
T COG4133 160 ALDKEGVALLTALMAAHAAQGGIVLLTTHQPLP 192 (209)
T ss_pred ccCHHHHHHHHHHHHHHhcCCCEEEEecCCccC
Confidence 999999999999998888889999999999863
|
|
| >COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.7e-30 Score=248.50 Aligned_cols=204 Identities=25% Similarity=0.336 Sum_probs=173.5
Q ss_pred ceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCCcc---cccceEEEeecCCC--CCC
Q 000979 628 KLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQE---TFARISGYCEQNDI--HSP 702 (1202)
Q Consensus 628 ~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~---~~~~~~~~v~q~~~--~~~ 702 (1202)
...+++.|||++++|+.+|++|.||||||||.|+|+|... |.+|+|.+||++..-. ...+.+-+++||+. +.|
T Consensus 25 ~~~AV~~vSFtL~~~QTlaiIG~NGSGKSTLakMlaGmi~--PTsG~il~n~~~L~~~Dy~~R~k~IRMiFQDpnts~NP 102 (267)
T COG4167 25 TVEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIE--PTSGEILINDHPLHFGDYSFRSKRIRMIFQDPNTSLNP 102 (267)
T ss_pred hhhcccceEEEecCCcEEEEEccCCCcHhHHHHHHhcccC--CCCceEEECCccccccchHhhhhheeeeecCCccccCh
Confidence 3458999999999999999999999999999999999877 5689999999986432 23467889999985 456
Q ss_pred CCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeC
Q 000979 703 FVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP-LRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDE 781 (1202)
Q Consensus 703 ~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~-~~~~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~illlDE 781 (1202)
.+.+.+-|... ++++.+.+.+.|.+++.+.++.+||-+ .++.. ++.||-||||||++||||+.+|+|++.||
T Consensus 103 Rl~iGqiLd~P--L~l~T~~~~~~R~~~i~~TL~~VGL~Pdhan~~-----~~~la~~QKQRVaLARALIL~P~iIIaDe 175 (267)
T COG4167 103 RLRIGQILDFP--LRLNTDLEPEQRRKQIFETLRMVGLLPDHANYY-----PHMLAPGQKQRVALARALILRPKIIIADE 175 (267)
T ss_pred hhhhhhHhcch--hhhcccCChHHHHHHHHHHHHHhccCccccccc-----hhhcCchhHHHHHHHHHHhcCCcEEEehh
Confidence 66666666554 455667788888999999999999864 33333 46799999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhcceEEEEecCCEEEEEcCCC
Q 000979 782 PTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLG 842 (1202)
Q Consensus 782 PtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G~~~ 842 (1202)
...+||...+.++.++..++.++ |.+-|.++.+.. -+..+.|+|++|++ |+++..|.+.
T Consensus 176 Al~~LD~smrsQl~NL~LeLQek~GiSyiYV~QhlG-~iKHi~D~viVM~E-G~vvE~G~t~ 235 (267)
T COG4167 176 ALASLDMSMRSQLINLMLELQEKQGISYIYVTQHIG-MIKHISDQVLVMHE-GEVVERGSTA 235 (267)
T ss_pred hhhhccHHHHHHHHHHHHHHHHHhCceEEEEechhh-HhhhhcccEEEEec-CceeecCChh
Confidence 99999999999999999998754 999999999987 47888999999996 8999999874
|
|
| >PRK10636 putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.2e-29 Score=315.08 Aligned_cols=204 Identities=20% Similarity=0.269 Sum_probs=156.9
Q ss_pred eEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCC
Q 000979 604 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 683 (1202)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 683 (1202)
++++||+++|. ++.+|+||||+|++||++||+||||||||||||+|+|... +.+|+|.++|..
T Consensus 2 i~i~nls~~~g-------------~~~~l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~--pd~G~I~~~~~~-- 64 (638)
T PRK10636 2 IVFSSLQIRRG-------------VRVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEIS--ADGGSYTFPGNW-- 64 (638)
T ss_pred EEEEEEEEEeC-------------CceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEecCCC--
Confidence 57889998873 3468999999999999999999999999999999999866 458999998742
Q ss_pred cccccceEEEeecCCCCCCCCCHHHHHHHHH-----------------------HccC-CCCCCHHHHHHHHHHHHHHcC
Q 000979 684 QETFARISGYCEQNDIHSPFVTIYESLLFSA-----------------------WLRL-SPEVDSETRKMFIDEVMELVE 739 (1202)
Q Consensus 684 ~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~-----------------------~~~~-~~~~~~~~~~~~~~~~l~~l~ 739 (1202)
.++|++|++... ..|+.+.+.-.. .+.. .......+.+.+++++++.+|
T Consensus 65 ------~i~~~~q~~~~~-~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lg 137 (638)
T PRK10636 65 ------QLAWVNQETPAL-PQPALEYVIDGDREYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGLG 137 (638)
T ss_pred ------EEEEEecCCCCC-CCCHHHHHHHhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCC
Confidence 368888864332 245544432100 0000 000000122346788999999
Q ss_pred CC-ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHH
Q 000979 740 LN-PLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSID 818 (1202)
Q Consensus 740 l~-~~~~~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~ 818 (1202)
+. +..+..+ ..|||||||||+||++|+.+|+||||||||+|||+.+...+.+.|+++ +.|||++|||.. .
T Consensus 138 l~~~~~~~~~-----~~LSgGerqRv~LA~aL~~~P~lLLLDEPtn~LD~~~~~~L~~~L~~~---~~tviivsHd~~-~ 208 (638)
T PRK10636 138 FSNEQLERPV-----SDFSGGWRMRLNLAQALICRSDLLLLDEPTNHLDLDAVIWLEKWLKSY---QGTLILISHDRD-F 208 (638)
T ss_pred CCchhhcCch-----hhcCHHHHHHHHHHHHHccCCCEEEEcCCCCcCCHHHHHHHHHHHHhC---CCeEEEEeCCHH-H
Confidence 96 4556553 479999999999999999999999999999999999999999998875 569999999986 5
Q ss_pred HHHhcceEEEEecCCEEE-EEcCC
Q 000979 819 IFEAFDELFLMKRGGQEI-YVGPL 841 (1202)
Q Consensus 819 ~~~~~d~v~~l~~gG~~~-~~G~~ 841 (1202)
+.+.||++++|++ |++. |.|+.
T Consensus 209 l~~~~d~i~~L~~-G~i~~~~g~~ 231 (638)
T PRK10636 209 LDPIVDKIIHIEQ-QSLFEYTGNY 231 (638)
T ss_pred HHHhcCEEEEEeC-CEEEEecCCH
Confidence 7789999999985 7775 66764
|
|
| >cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.3e-29 Score=256.11 Aligned_cols=151 Identities=33% Similarity=0.544 Sum_probs=131.4
Q ss_pred EeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCCc-
Q 000979 606 FDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ- 684 (1202)
Q Consensus 606 ~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~- 684 (1202)
++|+++.|+ ++.+|+++|+++++||+++|+||||||||||+++|+|..+ +..|++.++|.+...
T Consensus 2 ~~~~~~~~~-------------~~~~l~~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~~~--~~~G~i~~~~~~~~~~ 66 (157)
T cd00267 2 IENLSFRYG-------------GRTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLK--PTSGEILIDGKDIAKL 66 (157)
T ss_pred eEEEEEEeC-------------CeeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCccEEEECCEEcccC
Confidence 467777763 1358999999999999999999999999999999999876 458999999986542
Q ss_pred --ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHH
Q 000979 685 --ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRK 762 (1202)
Q Consensus 685 --~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrq 762 (1202)
...++.++|++| |||||+|
T Consensus 67 ~~~~~~~~i~~~~q-----------------------------------------------------------lS~G~~~ 87 (157)
T cd00267 67 PLEELRRRIGYVPQ-----------------------------------------------------------LSGGQRQ 87 (157)
T ss_pred CHHHHHhceEEEee-----------------------------------------------------------CCHHHHH
Confidence 223456777777 8999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEec
Q 000979 763 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKR 831 (1202)
Q Consensus 763 Rv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~ 831 (1202)
|++||++++.+|++++|||||+|||..++..+.+.|+++.+.++|+++++|+++ ++...+|+++++.+
T Consensus 88 r~~l~~~l~~~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~-~~~~~~d~i~~l~~ 155 (157)
T cd00267 88 RVALARALLLNPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPE-LAELAADRVIVLKD 155 (157)
T ss_pred HHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEeC
Confidence 999999999999999999999999999999999999998766899999999986 46677899999985
|
The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13409 putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.8e-29 Score=308.65 Aligned_cols=181 Identities=25% Similarity=0.264 Sum_probs=148.9
Q ss_pred eEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEE-----------EcCccCCcc-----cccceEE
Q 000979 629 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIT-----------ISGYPKKQE-----TFARISG 692 (1202)
Q Consensus 629 ~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~-----------~~g~~~~~~-----~~~~~~~ 692 (1202)
..+|++++ .+++||+++|+||||||||||||+|+|... +..|+|. ++|.++... ..+..++
T Consensus 87 ~~~L~~l~-~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~--p~~G~i~~~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~ 163 (590)
T PRK13409 87 GFKLYGLP-IPKEGKVTGILGPNGIGKTTAVKILSGELI--PNLGDYEEEPSWDEVLKRFRGTELQNYFKKLYNGEIKVV 163 (590)
T ss_pred ceeEecCC-cCCCCCEEEEECCCCCCHHHHHHHHhCCcc--CCCccccCCCcHHHHHHHhCChHHHHHHHHHhccCccee
Confidence 35899999 999999999999999999999999999876 3479987 888765321 1112345
Q ss_pred EeecCCCCCCC---CCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHH
Q 000979 693 YCEQNDIHSPF---VTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVE 769 (1202)
Q Consensus 693 ~v~q~~~~~~~---lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~a 769 (1202)
+.+|.....|. .||+|++... +.+..++++++.+++.+..|+.+ ..||||||||++||++
T Consensus 164 ~~~q~~~~~p~~~~~tv~e~l~~~------------~~~~~~~~~l~~l~l~~~~~~~~-----~~LSgGe~qrv~ia~a 226 (590)
T PRK13409 164 HKPQYVDLIPKVFKGKVRELLKKV------------DERGKLDEVVERLGLENILDRDI-----SELSGGELQRVAIAAA 226 (590)
T ss_pred ecccchhhhhhhhcchHHHHHHhh------------hHHHHHHHHHHHcCCchhhcCCh-----hhCCHHHHHHHHHHHH
Confidence 55654433332 3999998631 12245789999999988777764 5799999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEec
Q 000979 770 LVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKR 831 (1202)
Q Consensus 770 L~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~ 831 (1202)
|+.+|++|+|||||++||+.++..+.+.|+++++ |+|||+++|+++ .+...+|++++|.+
T Consensus 227 l~~~p~lllLDEPts~LD~~~~~~l~~~i~~l~~-g~tvIivsHd~~-~l~~~~D~v~vl~~ 286 (590)
T PRK13409 227 LLRDADFYFFDEPTSYLDIRQRLNVARLIRELAE-GKYVLVVEHDLA-VLDYLADNVHIAYG 286 (590)
T ss_pred HhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHC-CCEEEEEeCCHH-HHHHhCCEEEEEeC
Confidence 9999999999999999999999999999999987 999999999986 57788999999963
|
|
| >PRK11147 ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=99.96 E-value=7.5e-29 Score=309.17 Aligned_cols=203 Identities=23% Similarity=0.296 Sum_probs=155.1
Q ss_pred eEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCC
Q 000979 604 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 683 (1202)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 683 (1202)
++++|++++|. ++.+|+||||++++||+++|+|||||||||||++|+|... +.+|+|.++|..
T Consensus 4 l~i~~ls~~~~-------------~~~il~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~--p~~G~I~~~~~~-- 66 (635)
T PRK11147 4 ISIHGAWLSFS-------------DAPLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVL--LDDGRIIYEQDL-- 66 (635)
T ss_pred EEEeeEEEEeC-------------CceeEeCcEEEECCCCEEEEECCCCCCHHHHHHHHcCCCC--CCCeEEEeCCCC--
Confidence 78899998873 2458999999999999999999999999999999999866 457999988631
Q ss_pred cccccceEEEeecCCCCCCCCCHHHHHHHH------------------------------HHccC-CCCCCHHHHHHHHH
Q 000979 684 QETFARISGYCEQNDIHSPFVTIYESLLFS------------------------------AWLRL-SPEVDSETRKMFID 732 (1202)
Q Consensus 684 ~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~------------------------------~~~~~-~~~~~~~~~~~~~~ 732 (1202)
.++|++|.+......+|.+++..+ ..+.. .......+.+.+++
T Consensus 67 ------~~~~l~q~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 140 (635)
T PRK11147 67 ------IVARLQQDPPRNVEGTVYDFVAEGIEEQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQLDHHNLWQLENRIN 140 (635)
T ss_pred ------EEEEeccCCCCCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhcCcccHHHHHH
Confidence 246777755433334555543211 00000 00000011234578
Q ss_pred HHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEe
Q 000979 733 EVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTI 812 (1202)
Q Consensus 733 ~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~ 812 (1202)
++++.+|+.. ++. +..|||||||||+|||+|+.+|+||||||||++||+.++..+.+.|+++ +.|||++|
T Consensus 141 ~~l~~lgl~~--~~~-----~~~LSgGekqRv~LAraL~~~P~lLLLDEPt~~LD~~~~~~L~~~L~~~---~~tvlivs 210 (635)
T PRK11147 141 EVLAQLGLDP--DAA-----LSSLSGGWLRKAALGRALVSNPDVLLLDEPTNHLDIETIEWLEGFLKTF---QGSIIFIS 210 (635)
T ss_pred HHHHhCCCCC--CCc-----hhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHhC---CCEEEEEe
Confidence 8999999863 443 3579999999999999999999999999999999999999999999887 25999999
Q ss_pred cCCCHHHHHhcceEEEEecCCEEE-EEcCC
Q 000979 813 HQPSIDIFEAFDELFLMKRGGQEI-YVGPL 841 (1202)
Q Consensus 813 H~~~~~~~~~~d~v~~l~~gG~~~-~~G~~ 841 (1202)
||+. .+.+.||++++|++ |+++ |.|+.
T Consensus 211 Hd~~-~l~~~~d~i~~L~~-G~i~~~~g~~ 238 (635)
T PRK11147 211 HDRS-FIRNMATRIVDLDR-GKLVSYPGNY 238 (635)
T ss_pred CCHH-HHHHhcCeEEEEEC-CEEEEecCCH
Confidence 9986 57788999999985 7886 55765
|
|
| >TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.9e-29 Score=334.27 Aligned_cols=204 Identities=24% Similarity=0.392 Sum_probs=164.1
Q ss_pred ceeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCcc
Q 000979 602 HSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP 681 (1202)
Q Consensus 602 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 681 (1202)
..++++|++|.|+. .++++|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|
T Consensus 635 ~~i~~~~~~~~~~~-----------~~~~~l~~isl~i~~G~~v~IvG~~GsGKSTLl~~l~g~~~--~~~G~i~~~g-- 699 (1522)
T TIGR00957 635 NSITVHNATFTWAR-----------DLPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMD--KVEGHVHMKG-- 699 (1522)
T ss_pred CcEEEEEeEEEcCC-----------CCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCc--cCCcEEEECC--
Confidence 36999999999852 12358999999999999999999999999999999999876 4589999986
Q ss_pred CCcccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCC-------CccccccccCCCCC
Q 000979 682 KKQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVEL-------NPLRQSLVGLPGVS 754 (1202)
Q Consensus 682 ~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l-------~~~~~~~~~~~~~~ 754 (1202)
.++||+|++.++ +.||+||+.|+.. .+.+. .+++++..++ .+..++.+|..+ .
T Consensus 700 --------~i~yv~Q~~~l~-~~Ti~eNI~~g~~------~~~~~----~~~~~~~~~l~~~l~~~~~g~~t~ig~~g-~ 759 (1522)
T TIGR00957 700 --------SVAYVPQQAWIQ-NDSLRENILFGKA------LNEKY----YQQVLEACALLPDLEILPSGDRTEIGEKG-V 759 (1522)
T ss_pred --------EEEEEcCCcccc-CCcHHHHhhcCCc------cCHHH----HHHHHHHhCCHHHHHhcCCCCCceecCCC-C
Confidence 489999998876 5799999998631 12221 2233333322 223355666654 4
Q ss_pred CCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHH--HhCCCEEEEEecCCCHHHHHhcceEEEEecC
Q 000979 755 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT--VDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 832 (1202)
Q Consensus 755 ~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~--~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~g 832 (1202)
.||||||||++|||||.++|++++||||||+||+.+++.+.+.+.+. ..+|+|+|++||+++ ....+|++++|+ +
T Consensus 760 ~LSGGQkqRiaLARAl~~~~~illLDEp~saLD~~~~~~i~~~l~~~~~~~~~~tvIlvTH~~~--~l~~~D~ii~l~-~ 836 (1522)
T TIGR00957 760 NLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFEHVIGPEGVLKNKTRILVTHGIS--YLPQVDVIIVMS-G 836 (1522)
T ss_pred CCCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhhhhcCCEEEEEeCChh--hhhhCCEEEEec-C
Confidence 69999999999999999999999999999999999999999998653 235799999999986 456699999998 5
Q ss_pred CEEEEEcCCCc
Q 000979 833 GQEIYVGPLGR 843 (1202)
Q Consensus 833 G~~~~~G~~~~ 843 (1202)
|+++..|+.++
T Consensus 837 G~i~~~g~~~~ 847 (1522)
T TIGR00957 837 GKISEMGSYQE 847 (1522)
T ss_pred CeEEeeCCHHH
Confidence 89999998743
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. |
| >TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.8e-28 Score=325.96 Aligned_cols=191 Identities=21% Similarity=0.351 Sum_probs=151.4
Q ss_pred eEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCCcccccceEEEeecCCCCCCCCCHHH
Q 000979 629 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYE 708 (1202)
Q Consensus 629 ~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~lTv~e 708 (1202)
+++|+|+|+++++||+++|+|||||||||||++|+|..+ +.+|+|.++| .++||+|++.+++ .||+|
T Consensus 439 ~~~l~~i~l~i~~G~~~~I~G~~GsGKSTLl~~l~G~~~--~~~G~i~~~g----------~iayv~Q~~~l~~-~Ti~e 505 (1490)
T TIGR01271 439 TPVLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELE--PSEGKIKHSG----------RISFSPQTSWIMP-GTIKD 505 (1490)
T ss_pred CcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECC----------EEEEEeCCCccCC-ccHHH
Confidence 568999999999999999999999999999999999876 4589999987 3899999999887 59999
Q ss_pred HHHHHHHccCCCCCCHHHHHHHHH--HHHHHcCC-CccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCC
Q 000979 709 SLLFSAWLRLSPEVDSETRKMFID--EVMELVEL-NPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 785 (1202)
Q Consensus 709 ~l~~~~~~~~~~~~~~~~~~~~~~--~~l~~l~l-~~~~~~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~illlDEPtsg 785 (1202)
|+.|+.. .+.+..++.++ .+.+.++. .+..++.+|..+ ..||||||||++|||||+.+|++++|||||||
T Consensus 506 NI~~g~~------~~~~~~~~~~~~~~L~~~l~~l~~g~~t~vg~~g-~~LSgGqkqRi~lARAl~~~~~illLDep~sa 578 (1490)
T TIGR01271 506 NIIFGLS------YDEYRYTSVIKACQLEEDIALFPEKDKTVLGEGG-ITLSGGQRARISLARAVYKDADLYLLDSPFTH 578 (1490)
T ss_pred HHHhccc------cchHHHHHHHHHHhHHHHHHhccccccccccCcC-CCcCHHHHHHHHHHHHHHcCCCEEEEeCCccc
Confidence 9998632 11111111111 11122211 122345566654 56999999999999999999999999999999
Q ss_pred CCHHHHHHHHHH-HHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCCEEEEEcCCCc
Q 000979 786 LDARAAAIVMRT-VRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLGR 843 (1202)
Q Consensus 786 LD~~~~~~v~~~-l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G~~~~ 843 (1202)
||+.+++.+.+. ++++. +|+|+|++||+++ ..+.+|++++|+ +|+++..|+.++
T Consensus 579 LD~~~~~~i~~~~l~~~~-~~~tvilvtH~~~--~~~~ad~ii~l~-~g~i~~~g~~~~ 633 (1490)
T TIGR01271 579 LDVVTEKEIFESCLCKLM-SNKTRILVTSKLE--HLKKADKILLLH-EGVCYFYGTFSE 633 (1490)
T ss_pred CCHHHHHHHHHHHHHHHh-cCCeEEEEeCChH--HHHhCCEEEEEE-CCEEEEEcCHHH
Confidence 999999999984 66654 5899999999986 346799999998 589999998653
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. |
| >COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.2e-28 Score=237.39 Aligned_cols=211 Identities=28% Similarity=0.326 Sum_probs=156.3
Q ss_pred eEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCC
Q 000979 604 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 683 (1202)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 683 (1202)
++.++++..|. ...--+||||.+.|||+++|+|.|||||||||++|+++.. +..|+|.+.-.+-.
T Consensus 7 L~V~~lsk~Yg-------------~~~gc~~vsF~l~PGeVLgiVGESGSGKtTLL~~is~rl~--p~~G~v~Y~~r~~~ 71 (258)
T COG4107 7 LSVSGLSKLYG-------------PGKGCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLT--PDAGTVTYRMRDGQ 71 (258)
T ss_pred eeehhhhhhhC-------------CCcCccccceeecCCcEEEEEecCCCcHHhHHHHHhcccC--CCCCeEEEEcCCCC
Confidence 55667766553 2234789999999999999999999999999999999987 45788877653211
Q ss_pred --------ccc----ccceEEEeecCCCCCCCC------CHHHHHH-HHHHccCCCCCCHHHHHHHHHHHHHHcCCCccc
Q 000979 684 --------QET----FARISGYCEQNDIHSPFV------TIYESLL-FSAWLRLSPEVDSETRKMFIDEVMELVELNPLR 744 (1202)
Q Consensus 684 --------~~~----~~~~~~~v~q~~~~~~~l------Tv~e~l~-~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~ 744 (1202)
+.. .|..-|+|.|+|.-=-.+ .+.|-+. .+++-. ...++...++++.+++...
T Consensus 72 ~~dl~~msEaeRR~L~RTeWG~VhQnP~DGLRm~VSAG~NiGERlma~G~RHY-------G~iR~~a~~WL~~VEI~~~- 143 (258)
T COG4107 72 PRDLYTMSEAERRRLLRTEWGFVHQNPRDGLRMQVSAGGNIGERLMAIGARHY-------GNIRAEAQDWLEEVEIDLD- 143 (258)
T ss_pred chhHhhhchHHHHHHhhhccceeecCccccceeeeccCCccchhHHhhhhhhh-------hhHHHHHHHHHHhcccCcc-
Confidence 111 223459999986432222 3334332 121111 1234446778888877542
Q ss_pred cccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhc
Q 000979 745 QSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAF 823 (1202)
Q Consensus 745 ~~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~ 823 (1202)
++.. .++..|||++||+.|||-|++.|+++|+||||-|||..-+..++++++.+..+ |..++++|||.. -..-++
T Consensus 144 -RiDD--~PrtFSGGMqQRLQiARnLVt~PrLvfMDEPTGGLDVSVQARLLDllrgLv~~l~la~viVTHDl~-VarLla 219 (258)
T COG4107 144 -RIDD--LPRTFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLA-VARLLA 219 (258)
T ss_pred -cccC--cccccchHHHHHHHHHHHhccCCceEEecCCCCCcchhhHHHHHHHHHHHHHhcCceEEEEechhH-HHHHhh
Confidence 2211 24679999999999999999999999999999999999999999999999765 999999999975 244568
Q ss_pred ceEEEEecCCEEEEEcCCC
Q 000979 824 DELFLMKRGGQEIYVGPLG 842 (1202)
Q Consensus 824 d~v~~l~~gG~~~~~G~~~ 842 (1202)
||.++|.+ |+++..|-.+
T Consensus 220 ~rlmvmk~-g~vve~GLTD 237 (258)
T COG4107 220 DRLMVMKQ-GQVVESGLTD 237 (258)
T ss_pred hcceeecC-CCEecccccc
Confidence 99999985 8999999765
|
|
| >KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.7e-29 Score=294.26 Aligned_cols=108 Identities=23% Similarity=0.362 Sum_probs=102.1
Q ss_pred HHHHhCCcccccccccCCcccccCccccchhhHHHHHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHhHhCCCEEEEEe
Q 000979 50 YLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISL 129 (1202)
Q Consensus 50 il~~lgL~~~~dT~VG~~~~~gLSGGQKqRvsIAraLv~~P~ILlLDEpTSGLDs~sa~~vv~~L~~~a~~~~tTiIiai 129 (1202)
.=.+.++++.+||.|| |+|.+|||||||||||||||++||+||+|||||||||++||..|+++|.+.. +++|+++||
T Consensus 584 h~FI~~~p~gY~T~VG-EkG~qLSGGQKQRIAIARALlr~P~VLILDEATSALDaeSE~lVq~aL~~~~-~~rTVlvIA- 660 (716)
T KOG0058|consen 584 HEFITNFPDGYNTVVG-EKGSQLSGGQKQRIAIARALLRNPRVLILDEATSALDAESEYLVQEALDRLM-QGRTVLVIA- 660 (716)
T ss_pred HHHHHhCccccccccC-CccccccchHHHHHHHHHHHhcCCCEEEEechhhhcchhhHHHHHHHHHHhh-cCCeEEEEe-
Confidence 4478899999999999 7889999999999999999999999999999999999999999999998865 478889999
Q ss_pred cCCChHHHhhhcceEEecCCcEEEEcCcchHHH
Q 000979 130 LQPAPETYDLFDDIILLSDGQIVYQGPRELVLE 162 (1202)
Q Consensus 130 hQp~~s~~~~fD~IvvL~~G~vvy~G~~~el~~ 162 (1202)
||++|++.||+|+|+++|+|+|.|+|+||++
T Consensus 661 --HRLSTV~~Ad~Ivvi~~G~V~E~G~h~eLl~ 691 (716)
T KOG0058|consen 661 --HRLSTVRHADQIVVIDKGRVVEMGTHDELLS 691 (716)
T ss_pred --hhhhHhhhccEEEEEcCCeEEecccHHHHhh
Confidence 9999999999999999999999999999995
|
|
| >cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion | Back alignment and domain information |
|---|
Probab=99.96 E-value=9.2e-28 Score=260.64 Aligned_cols=197 Identities=19% Similarity=0.245 Sum_probs=132.0
Q ss_pred ceEEeecceEEEeCCeEEEEEcCCCCCHHHHH-HHHhC--CCC--C--ceEEEEEEEcCc-cCCccccc-ceEEEeecCC
Q 000979 628 KLVLLNGVSGAFRPGVLTALMGVSGAGKTTLM-DVLAG--RKT--G--GYITGNITISGY-PKKQETFA-RISGYCEQND 698 (1202)
Q Consensus 628 ~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl-~~l~g--~~~--~--~~~~G~i~~~g~-~~~~~~~~-~~~~~v~q~~ 698 (1202)
+..+|+||||++++||+++|+||||||||||+ ..+.. ... . .+..+. .+... .......+ ....+..|++
T Consensus 7 ~~~~l~~vsl~i~~Ge~~~l~G~sGsGKSTL~~~~i~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (226)
T cd03270 7 REHNLKNVDVDIPRNKLVVITGVSGSGKSSLAFDTIYAEGQRRYVESLSAYARQ-FLGQMDKPDVDSIEGLSPAIAIDQK 85 (226)
T ss_pred hhhccccceeecCCCcEEEEEcCCCCCHHHHHHHHHHHHHHHHHhhcccchhhh-hhcccCccccccccCCCceEEecCC
Confidence 45689999999999999999999999999995 44432 100 0 000000 00000 00001111 1233333433
Q ss_pred C--CCCCCCHH---HHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCCCCCCCCHHHHHHHHHHHHHhh
Q 000979 699 I--HSPFVTIY---ESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP-LRQSLVGLPGVSGLSTEQRKRLTIAVELVA 772 (1202)
Q Consensus 699 ~--~~~~lTv~---e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~-~~~~~~~~~~~~~LSgGqrqRv~ia~aL~~ 772 (1202)
. ..|..+|. |...+...+. ..+...++ .+.++.+++.+ ..+.. ++.||||||||++|||+|+.
T Consensus 86 ~~~~~~~~~v~~~~~~~~~~~~~~-----~~~~~~~~-~~~l~~~~l~~~~~~~~-----~~~LSgG~~qrv~laral~~ 154 (226)
T cd03270 86 TTSRNPRSTVGTVTEIYDYLRLLF-----ARVGIRER-LGFLVDVGLGYLTLSRS-----APTLSGGEAQRIRLATQIGS 154 (226)
T ss_pred CCCCCCCccHHHHHHHHHHHHHHh-----hhhhHHHH-HHHHHHCCCCcccccCc-----cCcCCHHHHHHHHHHHHHHh
Confidence 2 23444544 3222221111 11111222 46788899875 34544 35799999999999999999
Q ss_pred CC--CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEE------ecCCEEEEEc
Q 000979 773 NP--SIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLM------KRGGQEIYVG 839 (1202)
Q Consensus 773 ~p--~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l------~~gG~~~~~G 839 (1202)
+| ++|+|||||+|||+.++..+.+.|++++++|.|+|++||+++ . .+.||++++| + +|+++++|
T Consensus 155 ~p~~~llllDEPt~gLD~~~~~~l~~~l~~~~~~g~tii~itH~~~-~-~~~~d~i~~l~~~~~~~-~G~iv~~g 226 (226)
T cd03270 155 GLTGVLYVLDEPSIGLHPRDNDRLIETLKRLRDLGNTVLVVEHDED-T-IRAADHVIDIGPGAGVH-GGEIVAQG 226 (226)
T ss_pred CCCCCEEEEeCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEEeCHH-H-HHhCCEEEEeCCCcccc-CCEEEecC
Confidence 98 599999999999999999999999999877999999999985 3 4789999999 5 58999876
|
Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. |
| >COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.1e-28 Score=287.32 Aligned_cols=206 Identities=26% Similarity=0.340 Sum_probs=163.4
Q ss_pred eeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccC
Q 000979 603 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 682 (1202)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 682 (1202)
.++++|++++| +.+++|+|+|+++.+|+.+||||+||||||||||+|+|... +.+|+|...+.
T Consensus 3 ~i~~~~ls~~~-------------g~~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~--~~~G~i~~~~~-- 65 (530)
T COG0488 3 MITLENLSLAY-------------GDRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELE--PDSGEVTRPKG-- 65 (530)
T ss_pred eEEEeeeEEee-------------CCceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCc--CCCCeEeecCC--
Confidence 46788888887 34679999999999999999999999999999999999876 44788876542
Q ss_pred CcccccceEEEeecCCCCCCCCCHHHHHHHHHHc-c------------CCCC--------------CCHHHHHHHHHHHH
Q 000979 683 KQETFARISGYCEQNDIHSPFVTIYESLLFSAWL-R------------LSPE--------------VDSETRKMFIDEVM 735 (1202)
Q Consensus 683 ~~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~-~------------~~~~--------------~~~~~~~~~~~~~l 735 (1202)
-.++|++|++...+..||.+.+.-+..- . .... .+.-+.+.+++.++
T Consensus 66 ------~~v~~l~Q~~~~~~~~tv~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L 139 (530)
T COG0488 66 ------LRVGYLSQEPPLDPEKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEAL 139 (530)
T ss_pred ------ceEEEeCCCCCcCCCccHHHHHHhhhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHH
Confidence 2479999999999999999987654210 0 0000 00001124567788
Q ss_pred HHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCC
Q 000979 736 ELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQP 815 (1202)
Q Consensus 736 ~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~ 815 (1202)
..+|+.+. ++.+ ++||||||.||++|++|+.+|++|||||||++||..+...+-+.|++. .| |+|+||||-
T Consensus 140 ~gLg~~~~-~~~~-----~~LSGG~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~~--~g-tviiVSHDR 210 (530)
T COG0488 140 LGLGFPDE-DRPV-----SSLSGGWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKRY--PG-TVIVVSHDR 210 (530)
T ss_pred hcCCCCcc-cCch-----hhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhC--CC-cEEEEeCCH
Confidence 88888776 5554 579999999999999999999999999999999999999999999864 46 999999995
Q ss_pred CHHHHHhcceEEEEecCCEEEEEcCC
Q 000979 816 SIDIFEAFDELFLMKRGGQEIYVGPL 841 (1202)
Q Consensus 816 ~~~~~~~~d~v~~l~~gG~~~~~G~~ 841 (1202)
. .+-+.|++|+-+++|.-..|.|.-
T Consensus 211 ~-FLd~V~t~I~~ld~g~l~~y~Gny 235 (530)
T COG0488 211 Y-FLDNVATHILELDRGKLTPYKGNY 235 (530)
T ss_pred H-HHHHHhhheEEecCCceeEecCCH
Confidence 4 577889999999975455566653
|
|
| >PLN03073 ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=7e-28 Score=299.63 Aligned_cols=212 Identities=17% Similarity=0.167 Sum_probs=144.4
Q ss_pred ceeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCC-ceEEEEEEEcCc
Q 000979 602 HSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG-GYITGNITISGY 680 (1202)
Q Consensus 602 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~-~~~~G~i~~~g~ 680 (1202)
..+.++|++++|. ++.+|+|+||+|++||.+||+|||||||||||++|+|+... -+..|+|.+.++
T Consensus 176 ~~I~i~nls~~y~-------------~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~~~g~p~~g~I~~~~Q 242 (718)
T PLN03073 176 KDIHMENFSISVG-------------GRDLIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAIDGIPKNCQILHVEQ 242 (718)
T ss_pred eeEEEceEEEEeC-------------CCEEEECCEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCCCCEEEEEec
Confidence 4589999999983 23589999999999999999999999999999999986311 122344443222
Q ss_pred cC-----Cc------------ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHH------------------
Q 000979 681 PK-----KQ------------ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSE------------------ 725 (1202)
Q Consensus 681 ~~-----~~------------~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~------------------ 725 (1202)
.. .. ...++.+++++|++.+... ++.++... .. ....+.+
T Consensus 243 ~~~g~~~t~~~~v~~~~~~~~~~~~~~~~~~~q~~~l~~~-~~~~~~~~-~~---~~~~~~~~~~~r~~~~~~~~~~~~~ 317 (718)
T PLN03073 243 EVVGDDTTALQCVLNTDIERTQLLEEEAQLVAQQRELEFE-TETGKGKG-AN---KDGVDKDAVSQRLEEIYKRLELIDA 317 (718)
T ss_pred cCCCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhc-cccccccc-cc---ccccchHHHHHHHHHHHHHHHhcCc
Confidence 10 00 0001123444443221110 11111000 00 0000111
Q ss_pred -HHHHHHHHHHHHcCCC-ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 000979 726 -TRKMFIDEVMELVELN-PLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD 803 (1202)
Q Consensus 726 -~~~~~~~~~l~~l~l~-~~~~~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~ 803 (1202)
..++++.++++.+|+. +..++. +..||||||||++||++|+.+|++|||||||++||+.+...+.+.|+++
T Consensus 318 ~~~~~r~~~~L~~lgl~~~~~~~~-----~~~LSgG~k~rv~LA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~-- 390 (718)
T PLN03073 318 YTAEARAASILAGLSFTPEMQVKA-----TKTFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYLLKW-- 390 (718)
T ss_pred chHHHHHHHHHHHCCCChHHHhCc-----hhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHc--
Confidence 1233456677777775 334444 3579999999999999999999999999999999999999999999876
Q ss_pred CCCEEEEEecCCCHHHHHhcceEEEEecCCEEE-EEcCC
Q 000979 804 TGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEI-YVGPL 841 (1202)
Q Consensus 804 ~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~-~~G~~ 841 (1202)
+.|||+++|+.. .+.+.||++++|++ |++. |.|+.
T Consensus 391 -~~tviivsHd~~-~l~~~~d~i~~l~~-g~i~~~~g~~ 426 (718)
T PLN03073 391 -PKTFIVVSHARE-FLNTVVTDILHLHG-QKLVTYKGDY 426 (718)
T ss_pred -CCEEEEEECCHH-HHHHhCCEEEEEEC-CEEEEeCCCH
Confidence 679999999975 57788999999985 7886 66764
|
|
| >PTZ00243 ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.9e-27 Score=319.33 Aligned_cols=190 Identities=24% Similarity=0.300 Sum_probs=146.6
Q ss_pred ceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCCcccccceEEEeecCCCCCCCCCHH
Q 000979 628 KLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIY 707 (1202)
Q Consensus 628 ~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~lTv~ 707 (1202)
++.+|+|+|+++++||+++|+|||||||||||++|+|..+ +.+|+|.++ +.++||+|++.++ ..||+
T Consensus 672 ~~~iL~~isl~i~~G~~~~IiG~nGsGKSTLL~~i~G~~~--~~~G~i~~~----------~~i~yv~Q~~~l~-~~Tv~ 738 (1560)
T PTZ00243 672 PKVLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFE--ISEGRVWAE----------RSIAYVPQQAWIM-NATVR 738 (1560)
T ss_pred CceeEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCCC--CCCcEEEEC----------CeEEEEeCCCccC-CCcHH
Confidence 4579999999999999999999999999999999999876 457888753 4589999999876 47999
Q ss_pred HHHHHHHHccCCCCCCHHHHH-----HHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCC
Q 000979 708 ESLLFSAWLRLSPEVDSETRK-----MFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEP 782 (1202)
Q Consensus 708 e~l~~~~~~~~~~~~~~~~~~-----~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~illlDEP 782 (1202)
||+.|+.. .+.+..+ ...++.++.+ .+..++.+|.. ...||||||||++|||||+.+|++++||||
T Consensus 739 enI~~~~~------~~~~~~~~~~~~~~l~~~l~~l--~~g~~t~i~~~-g~~LSGGQkqRvaLARAl~~~p~illLDEP 809 (1560)
T PTZ00243 739 GNILFFDE------EDAARLADAVRVSQLEADLAQL--GGGLETEIGEK-GVNLSGGQKARVSLARAVYANRDVYLLDDP 809 (1560)
T ss_pred HHHHcCCh------hhHHHHHHHHHHhhhHHHHHHh--hccchHHhcCC-CCCCCHHHHHHHHHHHHHhcCCCEEEEcCc
Confidence 99998521 1111100 1122233333 11123344443 356999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCCEEEEEcCCC
Q 000979 783 TSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLG 842 (1202)
Q Consensus 783 tsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G~~~ 842 (1202)
|++||+.+++.+++.+.....+|+|+|++||+++ ..+.+|++++|++ |++++.|+.+
T Consensus 810 ~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~--~~~~ad~ii~l~~-G~i~~~G~~~ 866 (1560)
T PTZ00243 810 LSALDAHVGERVVEECFLGALAGKTRVLATHQVH--VVPRADYVVALGD-GRVEFSGSSA 866 (1560)
T ss_pred cccCCHHHHHHHHHHHHHHhhCCCEEEEEeCCHH--HHHhCCEEEEEEC-CEEEEecCHH
Confidence 9999999998888754222235899999999975 4578999999984 8999999864
|
|
| >cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.8e-27 Score=256.01 Aligned_cols=195 Identities=25% Similarity=0.288 Sum_probs=148.6
Q ss_pred EeecceEEEeCCeEEEEEcCCCCCHHHHHHHHh--------CCCC--C---ceEE------EEEEEcCccCCccc-----
Q 000979 631 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLA--------GRKT--G---GYIT------GNITISGYPKKQET----- 686 (1202)
Q Consensus 631 iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~--------g~~~--~---~~~~------G~i~~~g~~~~~~~----- 686 (1202)
-|+|||.+|+.|++++|.|+||||||||++.+. +... + .... --+.++..|+....
T Consensus 10 nl~~v~~~ip~g~~~~vtGvSGsGKStL~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~vdq~pi~~~~rs~~~ 89 (261)
T cd03271 10 NLKNIDVDIPLGVLTCVTGVSGSGKSSLINDTLYPALARRLHLKKEQPGNHDRIEGLEHIDKVIVIDQSPIGRTPRSNPA 89 (261)
T ss_pred cCCCceeeccCCcEEEEECCCCCchHHHHHHHHHHHHHHHhcccccCCCcccccccccccCceEEecCCcCCCCCCCcHH
Confidence 499999999999999999999999999998552 1100 0 0111 23666666543210
Q ss_pred --------ccc----------------eEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCc
Q 000979 687 --------FAR----------------ISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP 742 (1202)
Q Consensus 687 --------~~~----------------~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~ 742 (1202)
.|+ .+.|..++......+||.|++.|...+. . .+++.++++.+||..
T Consensus 90 ty~~~~~~ir~~fC~~C~G~r~~~~~l~~~~~g~~i~~v~~ltv~e~~~~~~~~~------~---~~~~~~~L~~vgL~~ 160 (261)
T cd03271 90 TYTGVFDEIRELFCEVCKGKRYNRETLEVRYKGKSIADVLDMTVEEALEFFENIP------K---IARKLQTLCDVGLGY 160 (261)
T ss_pred HHHHHHHHHHHhcCccccccccCHHHHhcCcCCCCHHHHhcCCHHHHHHHHHhhh------h---HHHHHHHHHHcCCch
Confidence 000 1345555555567899999999876432 1 234578899999976
Q ss_pred c-ccccccCCCCCCCCHHHHHHHHHHHHHhhC---CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHH
Q 000979 743 L-RQSLVGLPGVSGLSTEQRKRLTIAVELVAN---PSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSID 818 (1202)
Q Consensus 743 ~-~~~~~~~~~~~~LSgGqrqRv~ia~aL~~~---p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~ 818 (1202)
. .+.. .+.||||||||++||++|+.+ |++++|||||+|||+.....+.+.|+++.++|.|||+++|+++
T Consensus 161 l~l~~~-----~~~LSgGe~QRl~LAraL~~~~~~p~lllLDEPtsgLD~~~~~~l~~~L~~l~~~g~tvIiitH~~~-- 233 (261)
T cd03271 161 IKLGQP-----ATTLSGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRLVDKGNTVVVIEHNLD-- 233 (261)
T ss_pred hhhcCc-----cccCCHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH--
Confidence 3 4443 357999999999999999996 7999999999999999999999999999888999999999985
Q ss_pred HHHhcceEEEEe-----cCCEEEEEcCC
Q 000979 819 IFEAFDELFLMK-----RGGQEIYVGPL 841 (1202)
Q Consensus 819 ~~~~~d~v~~l~-----~gG~~~~~G~~ 841 (1202)
..+.+|+++.|. +||++++.|++
T Consensus 234 ~i~~aD~ii~Lgp~~g~~~G~iv~~Gt~ 261 (261)
T cd03271 234 VIKCADWIIDLGPEGGDGGGQVVASGTP 261 (261)
T ss_pred HHHhCCEEEEecCCcCCCCCEEEEeCCC
Confidence 456899999994 47999999974
|
Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases. |
| >KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.3e-27 Score=298.50 Aligned_cols=206 Identities=22% Similarity=0.385 Sum_probs=169.9
Q ss_pred CceeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCc
Q 000979 601 PHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGY 680 (1202)
Q Consensus 601 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~ 680 (1202)
...++++|.+++-+.. +....|+|||++|++|+++||+||-|||||+||.+|.|..+ ..+|++.++|.
T Consensus 516 ~~~i~i~~~sfsW~~~----------~~~~tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~--~~sG~v~v~gs 583 (1381)
T KOG0054|consen 516 ENAIEIKNGSFSWDSE----------SPEPTLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMP--KLSGSVAVNGS 583 (1381)
T ss_pred CceEEEeeeeEecCCC----------CCcccccceeEEecCCCEEEEECCCCCCHHHHHHHHhcCcc--cccceEEEcCe
Confidence 4468889999886421 12237999999999999999999999999999999999876 67899999884
Q ss_pred cCCcccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCC-------ccccccccCCCC
Q 000979 681 PKKQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELN-------PLRQSLVGLPGV 753 (1202)
Q Consensus 681 ~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-------~~~~~~~~~~~~ 753 (1202)
++||+|++-++. .||||||.|+.. .+ +++.+++++.+.|. +.-.|.+|..|+
T Consensus 584 ----------iaYv~Q~pWI~n-gTvreNILFG~~------~d----~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGErGi 642 (1381)
T KOG0054|consen 584 ----------VAYVPQQPWIQN-GTVRENILFGSP------YD----EERYDKVIKACALKKDLEILPFGDLTEIGERGI 642 (1381)
T ss_pred ----------EEEeccccHhhC-CcHHHhhhcCcc------cc----HHHHHHHHHHccCHhHHhhcCCCCcceecCCcc
Confidence 799999998874 799999999742 22 23356677766654 334566777776
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCC
Q 000979 754 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGG 833 (1202)
Q Consensus 754 ~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG 833 (1202)
.||||||||+++|||+-+|.+|++||.|.|++|++..+.+.+..-+-.-+++|+|++|||. +..+.+|.|++|++ |
T Consensus 643 -nLSGGQKqRIsLARAVY~~adIYLLDDplSAVDahvg~~if~~ci~~~L~~KT~ILVTHql--~~L~~ad~Iivl~~-G 718 (1381)
T KOG0054|consen 643 -NLSGGQKQRISLARAVYQDADIYLLDDPLSAVDAHVGKHIFEECIRGLLRGKTVILVTHQL--QFLPHADQIIVLKD-G 718 (1381)
T ss_pred -CCcHhHHHHHHHHHHHhccCCEEEEcCcchhhhHhhhHHHHHHHHHhhhcCCEEEEEeCch--hhhhhCCEEEEecC-C
Confidence 4999999999999999999999999999999999999988876544344689999999986 47889999999985 8
Q ss_pred EEEEEcCCCc
Q 000979 834 QEIYVGPLGR 843 (1202)
Q Consensus 834 ~~~~~G~~~~ 843 (1202)
++...|+.++
T Consensus 719 ~I~~~Gty~e 728 (1381)
T KOG0054|consen 719 KIVESGTYEE 728 (1381)
T ss_pred eEecccCHHH
Confidence 9999999854
|
|
| >COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.5e-27 Score=229.32 Aligned_cols=213 Identities=23% Similarity=0.262 Sum_probs=160.1
Q ss_pred eeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCcc-
Q 000979 603 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP- 681 (1202)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~- 681 (1202)
.+..+|++.+...... ..-..++|+|+||+++.||++++=||||+|||||||+|-|.+. +.+|+|.+....
T Consensus 4 ~l~v~~~~KtFtlH~q------~Gi~LpV~~~vslsV~aGECvvL~G~SG~GKStllr~LYaNY~--~d~G~I~v~H~g~ 75 (235)
T COG4778 4 PLNVSNVSKTFTLHQQ------GGVRLPVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYL--PDEGQILVRHEGE 75 (235)
T ss_pred eeeeecchhheEeeec------CCEEeeeeeceeEEecCccEEEeeCCCCCcHHHHHHHHHhccC--CCCceEEEEeCcc
Confidence 3556677655443210 1124578999999999999999999999999999999998765 457888876532
Q ss_pred -CC-----c----ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCC
Q 000979 682 -KK-----Q----ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLP 751 (1202)
Q Consensus 682 -~~-----~----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~ 751 (1202)
++ . .-.++.+|||.|.-...|.....|-..-...- .+.+.+..++++..++..+++.+..=.. +
T Consensus 76 ~vdl~~a~pr~vl~vRr~TiGyVSQFLRviPRV~aLdVvaePll~---~gv~~~~a~~~a~~Ll~rLnlperLW~L---a 149 (235)
T COG4778 76 WVDLVTAEPREVLEVRRTTIGYVSQFLRVIPRVSALDVVAEPLLA---RGVPREVARAKAADLLTRLNLPERLWSL---A 149 (235)
T ss_pred hhhhhccChHHHHHHHHhhhHHHHHHHHhccCcchHHHHHhHHHH---cCCCHHHHHHHHHHHHHHcCCCHHHhcC---C
Confidence 11 1 12345789999987777766554444332221 2345555667788999999987543222 1
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEec
Q 000979 752 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKR 831 (1202)
Q Consensus 752 ~~~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~ 831 (1202)
+...||||+|||.|||.++.+-+||+|||||+.||..++..++++|++.+.+|..+|=+-||-+ --...+||++-+..
T Consensus 150 -PaTFSGGEqQRVNIaRgfivd~pILLLDEPTasLDa~Nr~vVveli~e~Ka~GaAlvGIFHDee-vre~vadR~~~~~~ 227 (235)
T COG4778 150 -PATFSGGEQQRVNIARGFIVDYPILLLDEPTASLDATNRAVVVELIREAKARGAALVGIFHDEE-VREAVADRLLDVSA 227 (235)
T ss_pred -CcccCCchheehhhhhhhhccCceEEecCCcccccccchHHHHHHHHHHHhcCceEEEeeccHH-HHHHHhhheeeccc
Confidence 3579999999999999999999999999999999999999999999998788999999999843 22456899988764
|
|
| >PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.1e-27 Score=238.02 Aligned_cols=134 Identities=34% Similarity=0.531 Sum_probs=118.3
Q ss_pred eecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCCc---ccccceEEEeecCCCCCCCCCHHH
Q 000979 632 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ---ETFARISGYCEQNDIHSPFVTIYE 708 (1202)
Q Consensus 632 L~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~---~~~~~~~~~v~q~~~~~~~lTv~e 708 (1202)
|+|||+++++||+++|+||||||||||+++|+|... +.+|.|.++|.++.. ...++.++|++|++.+++.+||+|
T Consensus 1 L~~v~~~i~~g~~~~i~G~nGsGKStLl~~l~g~~~--~~~G~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~tv~~ 78 (137)
T PF00005_consen 1 LKNVSLEIKPGEIVAIVGPNGSGKSTLLKALAGLLP--PDSGSILINGKDISDIDIEELRRRIGYVPQDPQLFPGLTVRE 78 (137)
T ss_dssp EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSSH--ESEEEEEETTEEGTTSHHHHHHHTEEEEESSHCHHTTSBHHH
T ss_pred CCceEEEEcCCCEEEEEccCCCccccceeeeccccc--cccccccccccccccccccccccccccccccccccccccccc
Confidence 789999999999999999999999999999999876 458999999998765 345678999999999999999999
Q ss_pred HHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCC
Q 000979 709 SLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTS 784 (1202)
Q Consensus 709 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~illlDEPts 784 (1202)
| ..++.++++++.+++.+..++.++... ..||||||||++||+||+.+|++++|||||+
T Consensus 79 ~----------------~~~~~~~~~l~~l~~~~~~~~~~~~~~-~~LS~Ge~~rl~la~al~~~~~llllDEPt~ 137 (137)
T PF00005_consen 79 N----------------ESDERIEEVLKKLGLEDLLDRKIGQRA-SSLSGGEKQRLALARALLKNPKLLLLDEPTN 137 (137)
T ss_dssp H----------------HHHHHHHHHHHHTTHGGGTGSBGTSCG-GGSCHHHHHHHHHHHHHHTTSSEEEEESTTT
T ss_pred c----------------ccccccccccccccccccccccccccc-chhhHHHHHHHHHHHHHHcCCCEEEEeCCCC
Confidence 9 123347899999999888787775543 6799999999999999999999999999996
|
ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D .... |
| >cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.3e-26 Score=245.43 Aligned_cols=168 Identities=18% Similarity=0.244 Sum_probs=130.5
Q ss_pred ecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCC-------ceEEEEEEEcCccCCcccccceEEEeecCCCCCCCCC
Q 000979 633 NGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG-------GYITGNITISGYPKKQETFARISGYCEQNDIHSPFVT 705 (1202)
Q Consensus 633 ~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~-------~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~lT 705 (1202)
+++++++++| +++|+||||||||||+++|+|...+ +...|++.++|.+......++.+++|+|++..+
T Consensus 14 ~~~~l~~~~g-~~~i~G~nGsGKStll~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~vfq~~~~~---- 88 (197)
T cd03278 14 DKTTIPFPPG-LTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSETRKPANFAEVTLTFDNSDGR---- 88 (197)
T ss_pred CCeeeecCCC-cEEEECCCCCCHHHHHHHHHHHhccccchhhcccCHHHHhccCCCCCCCCceEEEEEEEEcCCCc----
Confidence 6789999999 9999999999999999999986421 122346777777654333457899999998665
Q ss_pred HHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHh----hCCCEEEEeC
Q 000979 706 IYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELV----ANPSIIFMDE 781 (1202)
Q Consensus 706 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~aL~----~~p~illlDE 781 (1202)
|.. . . +++++++++. .+..++. +..||||||||++||++|+ .+|++++|||
T Consensus 89 ------~~~--~-----~----~~~~~~~l~~---~~~~~~~-----~~~LS~G~kqrl~la~~l~~~~~~~~~illlDE 143 (197)
T cd03278 89 ------YSI--I-----S----QGDVSEIIEA---PGKKVQR-----LSLLSGGEKALTALALLFAIFRVRPSPFCVLDE 143 (197)
T ss_pred ------eeE--E-----e----hhhHHHHHhC---CCccccc-----hhhcCHHHHHHHHHHHHHHHhccCCCCEEEEeC
Confidence 110 0 0 1235666666 3344443 3579999999999999997 4669999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCC
Q 000979 782 PTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGG 833 (1202)
Q Consensus 782 PtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG 833 (1202)
||+|||+.....+.+.|+++++ +.|||++||++. ..+.+|+++.+...+
T Consensus 144 P~~~LD~~~~~~l~~~l~~~~~-~~tiIiitH~~~--~~~~~d~v~~~~~~~ 192 (197)
T cd03278 144 VDAALDDANVERFARLLKEFSK-ETQFIVITHRKG--TMEAADRLYGVTMQE 192 (197)
T ss_pred CcccCCHHHHHHHHHHHHHhcc-CCEEEEEECCHH--HHhhcceEEEEEecc
Confidence 9999999999999999999865 789999999975 457899999998654
|
Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w |
| >COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=5.3e-25 Score=242.30 Aligned_cols=196 Identities=22% Similarity=0.272 Sum_probs=143.1
Q ss_pred eecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCCcccccceEEEeecCCCCCCCCCHHHHHH
Q 000979 632 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESLL 711 (1202)
Q Consensus 632 L~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~ 711 (1202)
|+==.+++..||+++++||||-||||+.++|+|..++ .+|. .. .-.++|=||--.--...||++-+.
T Consensus 357 L~V~~G~i~~gEvigilGpNgiGKTTFvk~LAG~ikP--deg~----~~-------~~~vSyKPQyI~~~~~gtV~~~l~ 423 (591)
T COG1245 357 LEVEEGEIYDGEVIGILGPNGIGKTTFVKLLAGVIKP--DEGS----EE-------DLKVSYKPQYISPDYDGTVEDLLR 423 (591)
T ss_pred EEecCCeeecceEEEEECCCCcchHHHHHHHhccccC--CCCC----Cc-------cceEeecceeecCCCCCcHHHHHH
Confidence 3333567888999999999999999999999998763 3454 11 123567777544445689999776
Q ss_pred HHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHH
Q 000979 712 FSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA 791 (1202)
Q Consensus 712 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~ 791 (1202)
-...-+... .-...++++-|+|.+..++.+ .+|||||.|||+||.+|.+++++.+||||++-||.+.+
T Consensus 424 ~~~~~~~~~-------s~~~~ei~~pl~l~~i~e~~v-----~~LSGGELQRvaIaa~L~reADlYllDEPSA~LDvEqR 491 (591)
T COG1245 424 SAIRSAFGS-------SYFKTEIVKPLNLEDLLERPV-----DELSGGELQRVAIAAALSREADLYLLDEPSAYLDVEQR 491 (591)
T ss_pred Hhhhhhccc-------chhHHhhcCccchHHHHhccc-----ccCCchhHHHHHHHHHhccccCEEEecCchhhccHHHH
Confidence 433211111 112357888889988888875 57999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhcceEEEEecCCEEEEEcCC---CccchhHHHHHhhC
Q 000979 792 AIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPL---GRHSCHLISYFEAI 855 (1202)
Q Consensus 792 ~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G~~---~~~~~~~~~~f~~~ 855 (1202)
..+-+.||+.... ++|.+++-||.-. +--+.||+++.. |+---+|.. ....+.+..|.+.+
T Consensus 492 ~~vakvIRR~~e~~~kta~vVdHDi~~-~dyvsDr~ivF~--GePg~~g~a~~P~~mr~GMN~FLk~l 556 (591)
T COG1245 492 IIVAKVIRRFIENNEKTALVVDHDIYM-IDYVSDRLIVFE--GEPGKHGHASPPMSMREGMNRFLKNL 556 (591)
T ss_pred HHHHHHHHHHHhhcCceEEEEecceeh-hhhhhceEEEEe--cCCCccCcCCCCccHHHHHHHHHHHc
Confidence 9999999999754 7899999999753 344578888875 333333322 11223455666666
|
|
| >COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.93 E-value=6.6e-27 Score=225.76 Aligned_cols=194 Identities=25% Similarity=0.418 Sum_probs=164.3
Q ss_pred eecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCCc---ccccceEEEeecCCCCCCCCCHHH
Q 000979 632 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ---ETFARISGYCEQNDIHSPFVTIYE 708 (1202)
Q Consensus 632 L~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~---~~~~~~~~~v~q~~~~~~~lTv~e 708 (1202)
|-.+|+.+..||+.-++|||||||||||..++|..+ -+|+|.++|.+... ....|+.+|..|+..-...+.|+.
T Consensus 15 L~plS~qv~aGe~~HliGPNGaGKSTLLA~lAGm~~---~sGsi~~~G~~l~~~~~~eLArhRAYLsQqq~p~f~mpV~~ 91 (248)
T COG4138 15 LGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTS---GSGSIQFAGQPLEAWSATELARHRAYLSQQQTPPFAMPVWH 91 (248)
T ss_pred ccccccccccceEEEEECCCCccHHHHHHHHhCCCC---CCceEEECCcchhHHhHhHHHHHHHHHhhccCCcchhhhhh
Confidence 778999999999999999999999999999999875 37999999998754 345567789988876666788888
Q ss_pred HHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhh-----CC--CEEEEeC
Q 000979 709 SLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVA-----NP--SIIFMDE 781 (1202)
Q Consensus 709 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~aL~~-----~p--~illlDE 781 (1202)
.+... . +.+++...++++.+.+++.+...+. ++.|||||-|||-+|-..+. || ++|+|||
T Consensus 92 YL~L~----q----P~~~~a~~i~~i~~~L~l~DKL~Rs-----~~qLSGGEWQRVRLAav~LQv~Pd~NP~~~LLllDE 158 (248)
T COG4138 92 YLTLH----Q----PDKTRTELLNDVAGALALDDKLGRS-----TNQLSGGEWQRVRLAAVVLQITPDANPAGQLLLLDE 158 (248)
T ss_pred hhhhc----C----chHHHHHHHHHHHhhhcccchhhhh-----hhhcCcccceeeEEeEEEEEecCCCCccceeEEecC
Confidence 87643 2 2355666788999999998766554 46799999999999977654 55 5999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCCEEEEEcCCCc
Q 000979 782 PTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLGR 843 (1202)
Q Consensus 782 PtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G~~~~ 843 (1202)
|.++||...+..+-..|.+++++|.+||++.||.+ ...+.+|++.+|++ |+++..|..++
T Consensus 159 P~~~LDvAQ~~aLdrll~~~c~~G~~vims~HDLN-hTLrhA~~~wLL~r-G~l~~~G~~~e 218 (248)
T COG4138 159 PMNSLDVAQQSALDRLLSALCQQGLAIVMSSHDLN-HTLRHAHRAWLLKR-GKLLASGRREE 218 (248)
T ss_pred CCcchhHHHHHHHHHHHHHHHhCCcEEEEeccchh-hHHHHHHHHHHHhc-CeEEeecchhh
Confidence 99999999999999999999999999999999998 57889999999986 79999999865
|
|
| >COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.3e-26 Score=251.74 Aligned_cols=147 Identities=27% Similarity=0.317 Sum_probs=118.3
Q ss_pred hhHHHHHHH-HHHHhcCCCCCCCHH---------------HHHHHhhhhhhhhhHHHHHHHHHhCCcccccccccCCccc
Q 000979 7 PAEMLTELA-RREKAAGIKPDPDID---------------VYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIR 70 (1202)
Q Consensus 7 ~~~~~~~~~-~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~v~~il~~lgL~~~~dT~VG~~~~~ 70 (1202)
+.|+....- ..|++.|+.||.-+. ++..++..+.+..+ + --.+-.|++.+||.|| |++-
T Consensus 324 ~qdir~vtq~slR~aIg~VPQDtvLFNDti~yni~ygr~~at~eev~aaa~~aq--i--~~fi~~lP~gy~t~Vg-ergl 398 (497)
T COG5265 324 GQDIRDVTQQSLRRAIGIVPQDTVLFNDTIAYNIKYGRPDATAEEVGAAAEAAQ--I--HDFIQSLPEGYDTGVG-ERGL 398 (497)
T ss_pred chhHHHhHHHHHHHHhCcCcccceehhhhHHHHHhccCccccHHHHHHHHHHhh--h--hHHHHhCchhhhcccc-hhee
Confidence 455555332 337889999985432 22222221111111 1 1234578999999999 6667
Q ss_pred ccCccccchhhHHHHHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHhHhCCCEEEEEecCCChHHHhhhcceEEecCCc
Q 000979 71 GISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQ 150 (1202)
Q Consensus 71 gLSGGQKqRvsIAraLv~~P~ILlLDEpTSGLDs~sa~~vv~~L~~~a~~~~tTiIiaihQp~~s~~~~fD~IvvL~~G~ 150 (1202)
.|||||||||||||.|+++|+||+||||||+||+.+|.+++.+|++.+ .++||++|+ ||++|+-.||.|+||++|+
T Consensus 399 klSggekqrvaiar~ilk~p~il~~deatsaldt~te~~iq~~l~~~~-~~rttlvia---hrlsti~~adeiivl~~g~ 474 (497)
T COG5265 399 KLSGGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQAALREVS-AGRTTLVIA---HRLSTIIDADEIIVLDNGR 474 (497)
T ss_pred eccCchHHHHHHHHHHhcCCCEEEEehhhhHhhhhHHHHHHHHHHHHh-CCCeEEEEe---ehhhhccCCceEEEeeCCE
Confidence 799999999999999999999999999999999999999999999976 689999999 9999999999999999999
Q ss_pred EEEEcCcchHHH
Q 000979 151 IVYQGPRELVLE 162 (1202)
Q Consensus 151 vvy~G~~~el~~ 162 (1202)
++|.|+|+||+.
T Consensus 475 i~erg~h~~ll~ 486 (497)
T COG5265 475 IVERGTHEELLA 486 (497)
T ss_pred EEecCcHHHHHH
Confidence 999999999996
|
|
| >KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.7e-26 Score=250.70 Aligned_cols=147 Identities=23% Similarity=0.293 Sum_probs=120.0
Q ss_pred hhHHHHHH-HHHHHhcCCCCCCCHH---------------HHHHHhhhhhhhhhHHHHHHHHHhCCcccccccccCCccc
Q 000979 7 PAEMLTEL-ARREKAAGIKPDPDID---------------VYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIR 70 (1202)
Q Consensus 7 ~~~~~~~~-~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~v~~il~~lgL~~~~dT~VG~~~~~ 70 (1202)
|-|+++.. .--|+..|+.||..+. +.-++.-. +.+..+-.=++++++++++|+|| |+|-
T Consensus 599 gqdIrnvt~~SLRs~IGVVPQDtvLFNdTI~yNIryak~~Asneevya----AAkAA~IHdrIl~fPegY~t~VG-ERGL 673 (790)
T KOG0056|consen 599 GQDIRNVTQSSLRSSIGVVPQDTVLFNDTILYNIRYAKPSASNEEVYA----AAKAAQIHDRILQFPEGYNTRVG-ERGL 673 (790)
T ss_pred CchHHHHHHHHHHHhcCcccCcceeecceeeeheeecCCCCChHHHHH----HHHHhhHHHHHhcCchhhhhhhh-hccc
Confidence 45666643 3346788999985442 11111111 11112223467899999999999 6666
Q ss_pred ccCccccchhhHHHHHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHhHhCCCEEEEEecCCChHHHhhhcceEEecCCc
Q 000979 71 GISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQ 150 (1202)
Q Consensus 71 gLSGGQKqRvsIAraLv~~P~ILlLDEpTSGLDs~sa~~vv~~L~~~a~~~~tTiIiaihQp~~s~~~~fD~IvvL~~G~ 150 (1202)
.|||||||||||||++++.|.|++|||||||||..+|++++.+|.+++ .+|||||++ ||+||+-+||.|+|+++|+
T Consensus 674 kLSGGEKQRVAiARtiLK~P~iIlLDEATSALDT~tER~IQaaL~rlc-a~RTtIVvA---HRLSTivnAD~ILvi~~G~ 749 (790)
T KOG0056|consen 674 KLSGGEKQRVAIARTILKAPSIILLDEATSALDTNTERAIQAALARLC-ANRTTIVVA---HRLSTIVNADLILVISNGR 749 (790)
T ss_pred ccCCcchhhHHHHHHHhcCCcEEEEcchhhhcCCccHHHHHHHHHHHh-cCCceEEEe---eeehheecccEEEEEeCCe
Confidence 699999999999999999999999999999999999999999999987 489999999 9999999999999999999
Q ss_pred EEEEcCcchHHH
Q 000979 151 IVYQGPRELVLE 162 (1202)
Q Consensus 151 vvy~G~~~el~~ 162 (1202)
++|.|.|+||+.
T Consensus 750 IvErG~HeeLl~ 761 (790)
T KOG0056|consen 750 IVERGRHEELLK 761 (790)
T ss_pred EeecCcHHHHHh
Confidence 999999999985
|
|
| >PRK00635 excinuclease ABC subunit A; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.2e-22 Score=265.32 Aligned_cols=125 Identities=23% Similarity=0.322 Sum_probs=101.2
Q ss_pred CCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhC---CCEEEE
Q 000979 703 FVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVAN---PSIIFM 779 (1202)
Q Consensus 703 ~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~aL~~~---p~illl 779 (1202)
.|||.|.+.|... . .+-.+.-+.++.+||.-+. .|.+ ...|||||.||+-+|..|..+ +.+++|
T Consensus 1660 ~mtv~ea~~~F~~------~---~~i~~~L~~L~~vGLgYl~---LGq~-~~tLSGGE~qRikLa~~l~~~~~~~~lyil 1726 (1809)
T PRK00635 1660 QTPIEEVAETFPF------L---KKIQKPLQALIDNGLGYLP---LGQN-LSSLSLSEKIAIKIAKFLYLPPKHPTLFLL 1726 (1809)
T ss_pred cCCHHHHHHHhhc------c---HHHHHHHHHHHHcCCCeee---CCCc-CCccCchHHHHHHHHHHHhcCCCCCcEEEE
Confidence 4678887777531 0 1122345678888886542 2333 356999999999999999876 789999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEe-----cCCEEEEEcCCC
Q 000979 780 DEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK-----RGGQEIYVGPLG 842 (1202)
Q Consensus 780 DEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~-----~gG~~~~~G~~~ 842 (1202)
||||+||++.....+++.|++|.+.|.|||++.|++ ++.+.+|.++=|- +||++++.|+|+
T Consensus 1727 DEPt~GLh~~d~~~Ll~~l~~L~~~g~tvivieH~~--~~i~~aD~iidlgp~gG~~GG~iva~Gtp~ 1792 (1809)
T PRK00635 1727 DEIATSLDNQQKSALLVQLRTLVSLGHSVIYIDHDP--ALLKQADYLIEMGPGSGKTGGKILFSGPPK 1792 (1809)
T ss_pred cCCCCCCCHHHHHHHHHHHHHHHhcCCeEEEEeCCH--HHHHhCCEEEEcCCCcccCCCEEEEEeCHH
Confidence 999999999999999999999999999999999996 5788899999995 578999999985
|
|
| >COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.5e-25 Score=235.18 Aligned_cols=143 Identities=23% Similarity=0.284 Sum_probs=123.6
Q ss_pred HHHHHHHhcCCCCCC-----------CHHHHHHHhhhhhhhhhHHHHHHHHHhCCcccccccccCCcccccCccccchhh
Q 000979 13 ELARREKAAGIKPDP-----------DIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVT 81 (1202)
Q Consensus 13 ~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~v~~il~~lgL~~~~dT~VG~~~~~gLSGGQKqRvs 81 (1202)
+|.+.|+..|.-.|| ++..-.+...+++++++++|.++|+..||++.+|.+= .+|||||||||+
T Consensus 77 ~Lr~~R~~IGMIFQhFnLLssrTV~~NvA~PLeiag~~k~ei~~RV~elLelVgL~dk~~~yP-----~qLSGGQKQRVa 151 (339)
T COG1135 77 ELRQLRQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIKQRVAELLELVGLSDKADRYP-----AQLSGGQKQRVA 151 (339)
T ss_pred HHHHHHhhccEEeccccccccchHHhhhhhhHhhcCCCHHHHHHHHHHHHHHcCChhhhccCc-----hhcCcchhhHHH
Confidence 566667777766653 5556667778889999999999999999999999885 589999999999
Q ss_pred HHHHHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHhHhCCCEEEEEecCCChHHHhhhcceEEecCCcEEEEcCcchHH
Q 000979 82 TGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVL 161 (1202)
Q Consensus 82 IAraLv~~P~ILlLDEpTSGLDs~sa~~vv~~L~~~a~~~~tTiIiaihQp~~s~~~~fD~IvvL~~G~vvy~G~~~el~ 161 (1202)
|||||..+|+||++||||||||+.+..+|.+.|+++-++.|.||++.+||.- -+=+.+||+.||++|+++|+|+..++-
T Consensus 152 IARALa~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITHEm~-Vvk~ic~rVavm~~G~lvE~G~v~~vF 230 (339)
T COG1135 152 IARALANNPKILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHEME-VVKRICDRVAVLDQGRLVEEGTVSEVF 230 (339)
T ss_pred HHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEechHH-HHHHHhhhheEeeCCEEEEeccHHHhh
Confidence 9999999999999999999999999999999999998888888887766542 445567999999999999999988774
|
|
| >cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.91 E-value=5.3e-24 Score=235.29 Aligned_cols=188 Identities=16% Similarity=0.231 Sum_probs=129.7
Q ss_pred ceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCC----------------CCCc----eEEE--EEEEcCcc----
Q 000979 628 KLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGR----------------KTGG----YITG--NITISGYP---- 681 (1202)
Q Consensus 628 ~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~----------------~~~~----~~~G--~i~~~g~~---- 681 (1202)
++.++++++ |++++|+||||||||||+++|++. ...+ ...+ ++.+++.+
T Consensus 14 ~~~~~~~~~-----~~~~~i~GpNGsGKStll~ai~~~l~~~~~~~~~~~~~~li~~~~~~~~~~~~v~i~~~~~~~~~~ 88 (243)
T cd03272 14 DQTVIEPFS-----PKHNVVVGRNGSGKSNFFAAIRFVLSDEYTHLREEQRQALLHEGSGPSVMSAYVEIIFDNSDNRFP 88 (243)
T ss_pred cCcccccCC-----CCcEEEECCCCCCHHHHHHHHHHHHcCchhhhhhhhHHHhEeCCCCCCCceEEEEEEEEcCCCccC
Confidence 345777876 789999999999999999999832 1111 0112 44555532
Q ss_pred C--CcccccceEEEeecCCCCCC-CCCHHHHHHHHHHccCCCCCCHH-HHHHHHHHHHHHcCCCccccccccCCCCCCCC
Q 000979 682 K--KQETFARISGYCEQNDIHSP-FVTIYESLLFSAWLRLSPEVDSE-TRKMFIDEVMELVELNPLRQSLVGLPGVSGLS 757 (1202)
Q Consensus 682 ~--~~~~~~~~~~~v~q~~~~~~-~lTv~e~l~~~~~~~~~~~~~~~-~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LS 757 (1202)
. .....++.+++++|+..+++ ..|..|...+............. ... .++.+.+++.+..+.. .+.||
T Consensus 89 ~~~~~~~i~r~ig~~~~~~~l~~~~~t~~ei~~~l~~~gl~~~~~~~~~~q---g~i~~l~~l~~~~~~~-----~~~lS 160 (243)
T cd03272 89 IDKEEVRLRRTIGLKKDEYFLDKKNVTKNDVMNLLESAGFSRSNPYYIVPQ---GKINSLTNMKQDEQQE-----MQQLS 160 (243)
T ss_pred CCCCEEEEEEEEECCCCEEEECCeEcCHHHHHHHHHHcCCCCCCCcEEEEc---CchHHhhhcccccccc-----ccccC
Confidence 1 11234667899999877776 46777766655544322110000 001 1233334444333333 35799
Q ss_pred HHHHHHHHHHHHHhh----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEec
Q 000979 758 TEQRKRLTIAVELVA----NPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKR 831 (1202)
Q Consensus 758 gGqrqRv~ia~aL~~----~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~ 831 (1202)
||||||++||++|+. +|+++++||||+|||+.++..+++.|+++++ +.|+|+++|++ ++.+.+|++++|.-
T Consensus 161 ~G~~~r~~la~~l~~~~~~~~~illlDEp~~~ld~~~~~~~~~~l~~~~~-~~~ii~~~h~~--~~~~~~d~i~~l~~ 235 (243)
T cd03272 161 GGQKSLVALALIFAIQKCDPAPFYLFDEIDAALDAQYRTAVANMIKELSD-GAQFITTTFRP--ELLEVADKFYGVKF 235 (243)
T ss_pred HHHHHHHHHHHHHHHhccCCCCEEEEECCccCCCHHHHHHHHHHHHHHhC-CCEEEEEecCH--HHHhhCCEEEEEEE
Confidence 999999999999974 5899999999999999999999999999865 78888888885 57899999999963
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo |
| >COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.91 E-value=8.2e-25 Score=268.40 Aligned_cols=106 Identities=31% Similarity=0.394 Sum_probs=100.9
Q ss_pred HHhCCcccccccccCCcccccCccccchhhHHHHHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHhHhCCCEEEEEecC
Q 000979 52 KVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQ 131 (1202)
Q Consensus 52 ~~lgL~~~~dT~VG~~~~~gLSGGQKqRvsIAraLv~~P~ILlLDEpTSGLDs~sa~~vv~~L~~~a~~~~tTiIiaihQ 131 (1202)
.+..|+.++||.|| |+|.+||||||||++|||||+++|+||+||||||+||+.||..|.+.|+++. .++|+|+||
T Consensus 591 fI~~lP~gy~t~v~-E~G~~LSGGQrQrlalARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~-~~~T~I~Ia--- 665 (709)
T COG2274 591 FIENLPMGYDTPVG-EGGANLSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQNLLQIL-QGRTVIIIA--- 665 (709)
T ss_pred HHHhcccccccccc-cCCCCCCHHHHHHHHHHHHhccCCCEEEEeCcccccCHhHHHHHHHHHHHHh-cCCeEEEEE---
Confidence 46789999999999 8889999999999999999999999999999999999999999999999976 478889999
Q ss_pred CChHHHhhhcceEEecCCcEEEEcCcchHHH
Q 000979 132 PAPETYDLFDDIILLSDGQIVYQGPRELVLE 162 (1202)
Q Consensus 132 p~~s~~~~fD~IvvL~~G~vvy~G~~~el~~ 162 (1202)
||+++++.+|+|+||++|+++++|||+|+++
T Consensus 666 HRl~ti~~adrIiVl~~Gkiv~~gs~~ell~ 696 (709)
T COG2274 666 HRLSTIRSADRIIVLDQGKIVEQGSHEELLA 696 (709)
T ss_pred ccchHhhhccEEEEccCCceeccCCHHHHHH
Confidence 9999999999999999999999999999996
|
|
| >cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.4e-24 Score=227.65 Aligned_cols=168 Identities=18% Similarity=0.272 Sum_probs=124.6
Q ss_pred ceEEEeCCeEEEEEcCCCCCHHHHHHHHh----CCCCCceEEEEEEEcCccCCcccccceEEEeecCC-----CCCCCCC
Q 000979 635 VSGAFRPGVLTALMGVSGAGKTTLMDVLA----GRKTGGYITGNITISGYPKKQETFARISGYCEQND-----IHSPFVT 705 (1202)
Q Consensus 635 vs~~i~~Ge~~al~G~sGaGKSTLl~~l~----g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~-----~~~~~lT 705 (1202)
.++++.+| +++|+||||||||||+++|. |...++ .|.+..+.........+..+++++|++ .....+|
T Consensus 16 ~~l~~~~g-~~~i~G~NGsGKTTLl~ai~~~l~G~~~~~--~~~~~~~~~~i~~~~~~~~v~~~f~~~~~~~~~v~r~~~ 92 (204)
T cd03240 16 SEIEFFSP-LTLIVGQNGAGKTTIIEALKYALTGELPPN--SKGGAHDPKLIREGEVRAQVKLAFENANGKKYTITRSLA 92 (204)
T ss_pred eEEecCCC-eEEEECCCCCCHHHHHHHHHHHHcCCCCcc--cccccchHHHHhCCCCcEEEEEEEEeCCCCEEEEEEEhh
Confidence 34566777 99999999999999999995 765432 344331111122233456789999987 3334458
Q ss_pred HHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHH------HHHHHHHhhCCCEEEE
Q 000979 706 IYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKR------LTIAVELVANPSIIFM 779 (1202)
Q Consensus 706 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqR------v~ia~aL~~~p~illl 779 (1202)
+.||+.+. ..++ +++.+ +.. ++.||+||||| ++||++|+.+|+++++
T Consensus 93 ~~~~~~~~---------~~~~----~~~~~---------~~~-----~~~LS~G~~~~~~la~rlala~al~~~p~illl 145 (204)
T cd03240 93 ILENVIFC---------HQGE----SNWPL---------LDM-----RGRCSGGEKVLASLIIRLALAETFGSNCGILAL 145 (204)
T ss_pred Hhhceeee---------chHH----HHHHH---------hcC-----ccccCccHHHHHHHHHHHHHHHHhccCCCEEEE
Confidence 88887552 1111 22232 222 35799999996 7899999999999999
Q ss_pred eCCCCCCCHHHHH-HHHHHHHHHHhC-CCEEEEEecCCCHHHHHhcceEEEEecCCE
Q 000979 780 DEPTSGLDARAAA-IVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQ 834 (1202)
Q Consensus 780 DEPtsgLD~~~~~-~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~ 834 (1202)
||||++||+..+. .+.+.|++++++ |.|+|++||++. ..+.+|+++.|.++|+
T Consensus 146 DEP~~~LD~~~~~~~l~~~l~~~~~~~~~~iiiitH~~~--~~~~~d~i~~l~~~~~ 200 (204)
T cd03240 146 DEPTTNLDEENIEESLAEIIEERKSQKNFQLIVITHDEE--LVDAADHIYRVEKDGR 200 (204)
T ss_pred cCCccccCHHHHHHHHHHHHHHHHhccCCEEEEEEecHH--HHhhCCEEEEEeeCCC
Confidence 9999999999999 999999998766 899999999964 5678999999987764
|
The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence. |
| >cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.5e-25 Score=238.31 Aligned_cols=180 Identities=16% Similarity=0.222 Sum_probs=132.1
Q ss_pred CceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCCcccccceEEEeecCCCCCCCCCH
Q 000979 627 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTI 706 (1202)
Q Consensus 627 ~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~lTv 706 (1202)
+++.+++++++ ++++|+||||||||||+++|.- ++|.+... ..++.+++++|+...++.+|+
T Consensus 15 ~~~~~l~~~~~-----~i~~ivGpNGaGKSTll~~i~~------------~~G~~~~~-~~~~~i~~~~~~~~~~~~~~~ 76 (212)
T cd03274 15 AGEQVIGPFHK-----SFSAIVGPNGSGKSNVIDSMLF------------VFGFRASK-MRQKKLSDLIHNSAGHPNLDS 76 (212)
T ss_pred CCCeeeccCCC-----CeEEEECCCCCCHHHHHHHHHH------------HhccCHHH-hhhhhHHHHhcCCCCCCCCce
Confidence 34568999987 8999999999999999999961 12322111 112457888888888888888
Q ss_pred HHHHHHHHHccCC-----CCCCHHHHHH--HHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhh----CCC
Q 000979 707 YESLLFSAWLRLS-----PEVDSETRKM--FIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVA----NPS 775 (1202)
Q Consensus 707 ~e~l~~~~~~~~~-----~~~~~~~~~~--~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~aL~~----~p~ 775 (1202)
+|.+.+....... .....+.... ..+++++.+++.+..++.+ ..||+|||||++||++++. +|+
T Consensus 77 ~~~~~~~~~~~~~~~l~~~g~~~~~~~~~v~~~~~~~~~~L~~~~~~~~-----~~lS~G~~~r~~la~al~~~~~~~p~ 151 (212)
T cd03274 77 CSVEVHFQEIIDKPLLKSKGIDLDHNRFLILQGEVEQIAQMPKKSWKNI-----SNLSGGEKTLSSLALVFALHHYKPTP 151 (212)
T ss_pred EEEEEEEEeCCCHHHHHHCCcCCCCCceEEcCCcEEEeeccccccccch-----hhcCHHHHHHHHHHHHHHhcccCCCC
Confidence 8876654432100 0011110000 1245666777776666653 4699999999999999974 479
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecC
Q 000979 776 IIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 832 (1202)
Q Consensus 776 illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~g 832 (1202)
+++|||||+|||+.++..+.+.|++++ ++.|+|++||++ ++.+.||++++|...
T Consensus 152 ililDEPt~gLD~~~~~~l~~~l~~~~-~~~~~iivs~~~--~~~~~~d~v~~~~~~ 205 (212)
T cd03274 152 LYVMDEIDAALDFRNVSIVANYIKERT-KNAQFIVISLRN--NMFELADRLVGIYKT 205 (212)
T ss_pred EEEEcCCCcCCCHHHHHHHHHHHHHHc-CCCEEEEEECcH--HHHHhCCEEEEEEec
Confidence 999999999999999999999999985 467899999985 578999999999853
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo |
| >COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.90 E-value=6.5e-24 Score=214.57 Aligned_cols=142 Identities=20% Similarity=0.300 Sum_probs=119.8
Q ss_pred HHHHHHHhcCCCCCC-----------CH-HHHHHHhhhhhhhhhHHHHHHHHHhCCcccccccccCCcccccCccccchh
Q 000979 13 ELARREKAAGIKPDP-----------DI-DVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRV 80 (1202)
Q Consensus 13 ~~~~~~~~~~~~~~~-----------~~-~~~~~~~~~~~~~~~~~v~~il~~lgL~~~~dT~VG~~~~~gLSGGQKqRv 80 (1202)
++.+.|+..|...|+ |+ ..-+....++++|+++...++|+..||.+.+|.+= .+|||||||||
T Consensus 71 ~~~~~R~~vGmVFQ~fnLFPHlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP-----~qLSGGQqQRV 145 (240)
T COG1126 71 DILKLRRKVGMVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLADKADAYP-----AQLSGGQQQRV 145 (240)
T ss_pred hHHHHHHhcCeecccccccccchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhhhhCc-----cccCcHHHHHH
Confidence 666777777766662 22 13344567777888888899999999999999985 58999999999
Q ss_pred hHHHHHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHhHhCCCEEEEEecCCChHHHhhhcceEEecCCcEEEEcCcchH
Q 000979 81 TTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELV 160 (1202)
Q Consensus 81 sIAraLv~~P~ILlLDEpTSGLDs~sa~~vv~~L~~~a~~~~tTiIiaihQp~~s~~~~fD~IvvL~~G~vvy~G~~~el 160 (1202)
||||||.-+|+|+++||||||||++...+|.+.++++|. .|.|.+|.+|.-. =.-+-+|||+.|++|+++++|++++.
T Consensus 146 AIARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~-eGmTMivVTHEM~-FAr~VadrviFmd~G~iie~g~p~~~ 223 (240)
T COG1126 146 AIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAE-EGMTMIIVTHEMG-FAREVADRVIFMDQGKIIEEGPPEEF 223 (240)
T ss_pred HHHHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHH-cCCeEEEEechhH-HHHHhhheEEEeeCCEEEEecCHHHH
Confidence 999999999999999999999999999999999999986 6778888777433 55677899999999999999988876
Q ss_pred H
Q 000979 161 L 161 (1202)
Q Consensus 161 ~ 161 (1202)
.
T Consensus 224 f 224 (240)
T COG1126 224 F 224 (240)
T ss_pred h
Confidence 4
|
|
| >KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.90 E-value=9.2e-23 Score=228.78 Aligned_cols=203 Identities=21% Similarity=0.244 Sum_probs=150.0
Q ss_pred CceeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCc
Q 000979 601 PHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGY 680 (1202)
Q Consensus 601 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~ 680 (1202)
+..+++.+|+|.|+- +.-+++.+++..++.-+-.+++|+||+||||+++++.|... +.+|.+-+.+
T Consensus 360 ~p~l~i~~V~f~y~p-----------~~y~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~--~~rgi~~~~~- 425 (582)
T KOG0062|consen 360 PPNLRISYVAFEYTP-----------SEYQWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLT--PTRGIVGRHP- 425 (582)
T ss_pred CCeeEEEeeeccCCC-----------cchhhhhccCCccchhhhhheeccCchhHHHHHHHHhccCC--cccceeeecc-
Confidence 345788899888752 11157889999999999999999999999999999998655 3456554432
Q ss_pred cCCcccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHH
Q 000979 681 PKKQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQ 760 (1202)
Q Consensus 681 ~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGq 760 (1202)
|..++|-.|...-+-.+.|-+ +.+....+ ++...++ +++-+..+||..-.-. ..+.+|||||
T Consensus 426 -------r~ri~~f~Qhhvd~l~~~v~~-vd~~~~~~--pG~~~ee----~r~hl~~~Gl~g~la~----~si~~LSGGQ 487 (582)
T KOG0062|consen 426 -------RLRIKYFAQHHVDFLDKNVNA-VDFMEKSF--PGKTEEE----IRRHLGSFGLSGELAL----QSIASLSGGQ 487 (582)
T ss_pred -------cceecchhHhhhhHHHHHhHH-HHHHHHhC--CCCCHHH----HHHHHHhcCCCchhhh----ccccccCCcc
Confidence 456789888755443444433 23333332 2223332 5677888999753211 1246799999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCCEEE-EEc
Q 000979 761 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEI-YVG 839 (1202)
Q Consensus 761 rqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~-~~G 839 (1202)
|-||++|.....+|.+|+|||||+.||-.+-..+.+.|+.+ +-.||+++|+.+ -+-..|+.+.+..+ |++. +.|
T Consensus 488 KsrvafA~~~~~~PhlLVLDEPTNhLD~dsl~AL~~Al~~F---~GGVv~VSHd~~-fi~~~c~E~Wvve~-g~vt~ieg 562 (582)
T KOG0062|consen 488 KSRVAFAACTWNNPHLLVLDEPTNHLDRDSLGALAKALKNF---NGGVVLVSHDEE-FISSLCKELWVVED-GKVTPIEG 562 (582)
T ss_pred hhHHHHHHHhcCCCcEEEecCCCccccHHHHHHHHHHHHhc---CCcEEEEECcHH-HHhhcCceeEEEcC-CcEEeeec
Confidence 99999999999999999999999999999999999999876 347999999975 46778999999985 5655 444
Q ss_pred C
Q 000979 840 P 840 (1202)
Q Consensus 840 ~ 840 (1202)
.
T Consensus 563 ~ 563 (582)
T KOG0062|consen 563 G 563 (582)
T ss_pred c
Confidence 4
|
|
| >KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.1e-24 Score=244.48 Aligned_cols=105 Identities=28% Similarity=0.373 Sum_probs=96.9
Q ss_pred HhCCcccccccccCCcccccCccccchhhHHHHHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHhHhCCCEEEEEecCC
Q 000979 53 VLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQP 132 (1202)
Q Consensus 53 ~lgL~~~~dT~VG~~~~~gLSGGQKqRvsIAraLv~~P~ILlLDEpTSGLDs~sa~~vv~~L~~~a~~~~tTiIiaihQp 132 (1202)
...|+++++|.|| |+|.-||||||||||+|||+++||+|++||||||+||+.+|.++++.+++.. .++|.|.|+ |
T Consensus 470 i~~l~~GY~T~VG-erG~~LSGGekQrvslaRa~lKda~Il~~DEaTS~LD~~TE~~i~~~i~~~~-~~rTvI~Iv---H 544 (591)
T KOG0057|consen 470 ISRLPDGYQTLVG-ERGLMLSGGEKQRVSLARAFLKDAPILLLDEATSALDSETEREILDMIMDVM-SGRTVIMIV---H 544 (591)
T ss_pred HHhccccchhhHh-hcccccccchHHHHHHHHHHhcCCCeEEecCcccccchhhHHHHHHHHHHhc-CCCeEEEEE---e
Confidence 5678999999999 7788899999999999999999999999999999999999999999999844 355666677 8
Q ss_pred ChHHHhhhcceEEecCCcEEEEcCcchHHH
Q 000979 133 APETYDLFDDIILLSDGQIVYQGPRELVLE 162 (1202)
Q Consensus 133 ~~s~~~~fD~IvvL~~G~vvy~G~~~el~~ 162 (1202)
++++.+.||+|++|++|++.+.|+|+|++.
T Consensus 545 ~l~ll~~~DkI~~l~nG~v~e~gth~ell~ 574 (591)
T KOG0057|consen 545 RLDLLKDFDKIIVLDNGTVKEYGTHSELLA 574 (591)
T ss_pred cchhHhcCCEEEEEECCeeEEeccHHHHhh
Confidence 899999999999999999999999999997
|
|
| >COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.90 E-value=6e-23 Score=222.11 Aligned_cols=207 Identities=22% Similarity=0.258 Sum_probs=160.6
Q ss_pred ceeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCcc
Q 000979 602 HSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP 681 (1202)
Q Consensus 602 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 681 (1202)
..++++||.|+|+... -=+..||++|++||++-|+|.|||||||++++|+|... |.+|+|.+||.|
T Consensus 321 ~~lelrnvrfay~~~~------------FhvgPiNl~ikrGelvFliG~NGsGKST~~~LLtGL~~--PqsG~I~ldg~p 386 (546)
T COG4615 321 KTLELRNVRFAYQDNA------------FHVGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQ--PQSGEILLDGKP 386 (546)
T ss_pred cceeeeeeeeccCccc------------ceecceeeEEecCcEEEEECCCCCcHHHHHHHHhcccC--CCCCceeECCcc
Confidence 4689999999996321 12788999999999999999999999999999999877 558999999999
Q ss_pred CCc---ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCH
Q 000979 682 KKQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLST 758 (1202)
Q Consensus 682 ~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSg 758 (1202)
++. +++|+..+-|+-|..+|+.+ + .++.... .+.++..++.+.+.+...-..|.-..-.||.
T Consensus 387 V~~e~ledYR~LfSavFsDyhLF~~l-----------l-~~e~~as---~q~i~~~LqrLel~~ktsl~d~~fs~~kLSt 451 (546)
T COG4615 387 VSAEQLEDYRKLFSAVFSDYHLFDQL-----------L-GPEGKAS---PQLIEKWLQRLELAHKTSLNDGRFSNLKLST 451 (546)
T ss_pred CCCCCHHHHHHHHHHHhhhHhhhHhh-----------h-CCccCCC---hHHHHHHHHHHHHhhhhcccCCccccccccc
Confidence 865 34666666666665555422 1 1112111 2336778888877765443333322345999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHH-HHHhCCCEEEEEecCCCHHHHHhcceEEEEecCCEEEE
Q 000979 759 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR-NTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIY 837 (1202)
Q Consensus 759 GqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~-~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~ 837 (1202)
|||||+++-.||+-+-+|+++||=-+.-||.-++.+.+.+- .++++|+||+.+|||-. -|..+||++.+.+ |+++.
T Consensus 452 GQkKRlAll~AllEeR~Ilv~DEWAADQDPaFRR~FY~~lLp~LK~qGKTI~aIsHDd~--YF~~ADrll~~~~-G~~~e 528 (546)
T COG4615 452 GQKKRLALLLALLEERDILVLDEWAADQDPAFRREFYQVLLPLLKEQGKTIFAISHDDH--YFIHADRLLEMRN-GQLSE 528 (546)
T ss_pred chHHHHHHHHHHHhhCCeEEeehhhccCChHHHHHHHHHHhHHHHHhCCeEEEEecCch--hhhhHHHHHHHhc-Cceee
Confidence 99999999999999999999999999999999999987765 45677999999999954 6899999999985 78887
Q ss_pred EcC
Q 000979 838 VGP 840 (1202)
Q Consensus 838 ~G~ 840 (1202)
.-+
T Consensus 529 ~tg 531 (546)
T COG4615 529 LTG 531 (546)
T ss_pred ccc
Confidence 654
|
|
| >cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.9e-23 Score=225.26 Aligned_cols=180 Identities=17% Similarity=0.089 Sum_probs=121.4
Q ss_pred ecceEEEe-CCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcC--ccCCcccccceEEEeecCCCCCCCCCHHHH
Q 000979 633 NGVSGAFR-PGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISG--YPKKQETFARISGYCEQNDIHSPFVTIYES 709 (1202)
Q Consensus 633 ~~vs~~i~-~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g--~~~~~~~~~~~~~~v~q~~~~~~~lTv~e~ 709 (1202)
++++|... +|++++|+||||||||||+++|++... |+..+....+. ...........+++++|++.... ++.+.
T Consensus 18 ~~i~~~~~~~~~~~~i~G~NGsGKSTll~~i~~~l~-g~~~~~~~~~~~~~~~~~~~~~~~v~~~f~~~~~~~--~~~r~ 94 (213)
T cd03279 18 QVIDFTGLDNNGLFLICGPTGAGKSTILDAITYALY-GKTPRYGRQENLRSVFAPGEDTAEVSFTFQLGGKKY--RVERS 94 (213)
T ss_pred eEEeCCCCCccCEEEEECCCCCCHHHHHHHheeeEe-cCccccccchhHHHHhcCCCccEEEEEEEEECCeEE--EEEEe
Confidence 45566543 589999999999999999999986332 12222222211 11111233456888988763311 11111
Q ss_pred HHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhh----------CCCEEEE
Q 000979 710 LLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVA----------NPSIIFM 779 (1202)
Q Consensus 710 l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~aL~~----------~p~illl 779 (1202)
. ..+.++..+.+ .++..++.+..+.. ++.||||||||++||++|+. +|++++|
T Consensus 95 ~----------gl~~~~~~~~~--~l~~g~l~~~l~~~-----~~~lS~G~~~r~~la~al~~~p~~~~~~~~~~~~lll 157 (213)
T cd03279 95 R----------GLDYDQFTRIV--LLPQGEFDRFLARP-----VSTLSGGETFLASLSLALALSEVLQNRGGARLEALFI 157 (213)
T ss_pred c----------CCCHHHHHHhh--hhhhcchHHHhcCC-----ccccCHHHHHHHHHHHHHHhHHHhhhccCCCCCEEEE
Confidence 0 22222211111 12333343333433 35799999999999999985 5789999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCC
Q 000979 780 DEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGG 833 (1202)
Q Consensus 780 DEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG 833 (1202)
||||+|||+.+...+.+.|++++++|+|+|++||+++ .+...+|+++++.+||
T Consensus 158 DEp~~~lD~~~~~~~~~~l~~~~~~~~tii~itH~~~-~~~~~~~~i~~~~~~~ 210 (213)
T cd03279 158 DEGFGTLDPEALEAVATALELIRTENRMVGVISHVEE-LKERIPQRLEVIKTPG 210 (213)
T ss_pred eCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECchH-HHHhhCcEEEEEecCC
Confidence 9999999999999999999999777999999999986 4677889999998765
|
They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini. |
| >COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.7e-23 Score=244.28 Aligned_cols=199 Identities=25% Similarity=0.348 Sum_probs=156.7
Q ss_pred CceeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCc
Q 000979 601 PHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGY 680 (1202)
Q Consensus 601 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~ 680 (1202)
...++++|++..-| ++...|++.++.++|||-+.|.||||||||||+|+|+|.=+.+ +|+|..-
T Consensus 390 ~~~i~~~nl~l~~p------------~~~~ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g--~G~I~~P-- 453 (604)
T COG4178 390 DHGITLENLSLRTP------------DGQTLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWG--SGRISMP-- 453 (604)
T ss_pred cceeEEeeeeEECC------------CCCeeeccceeeeCCCCEEEEECCCCCCHHHHHHHHhccCccC--CCceecC--
Confidence 46789999887643 3347899999999999999999999999999999999987655 4666432
Q ss_pred cCCcccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccC-CCCCCCCHH
Q 000979 681 PKKQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGL-PGVSGLSTE 759 (1202)
Q Consensus 681 ~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~-~~~~~LSgG 759 (1202)
....+-|+||.|.+.. -|.||-+.|.... ...++ +.+.+++..+||.+..++..+. +-.+.||+|
T Consensus 454 ------~~~~~lflpQ~PY~p~-GtLre~l~YP~~~---~~~~d----~~l~~vL~~vgL~~L~~rl~~~~~W~~vLS~G 519 (604)
T COG4178 454 ------ADSALLFLPQRPYLPQ-GTLREALCYPNAA---PDFSD----AELVAVLHKVGLGDLAERLDEEDRWDRVLSGG 519 (604)
T ss_pred ------CCCceEEecCCCCCCC-ccHHHHHhCCCCC---CCCCh----HHHHHHHHHcCcHHHHHHHhccCcHhhhcChh
Confidence 1123679999988754 5999999885321 12333 3367899999999887766432 123469999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecC
Q 000979 760 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 832 (1202)
Q Consensus 760 qrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~g 832 (1202)
|||||++||.|+++|++++|||.||+||+.++..+.+.+++-. .+.|||-+.|++. +..+.++.+-+.++
T Consensus 520 EqQRlafARilL~kP~~v~LDEATsALDe~~e~~l~q~l~~~l-p~~tvISV~Hr~t--l~~~h~~~l~l~~~ 589 (604)
T COG4178 520 EQQRLAFARLLLHKPKWVFLDEATSALDEETEDRLYQLLKEEL-PDATVISVGHRPT--LWNFHSRQLELLDD 589 (604)
T ss_pred HHHHHHHHHHHHcCCCEEEEecchhccChHHHHHHHHHHHhhC-CCCEEEEeccchh--hHHHHhhheeeccc
Confidence 9999999999999999999999999999999999999998632 4899999999975 45666776666543
|
|
| >cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.90 E-value=8.2e-24 Score=234.27 Aligned_cols=179 Identities=15% Similarity=0.236 Sum_probs=131.2
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCc-cC-Cc----ccccceEEEeecCC---------CCCCCCCH
Q 000979 642 GVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGY-PK-KQ----ETFARISGYCEQND---------IHSPFVTI 706 (1202)
Q Consensus 642 Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~-~~-~~----~~~~~~~~~v~q~~---------~~~~~lTv 706 (1202)
..+++|+||||||||||+++|++...+. ..|.+...|. +. .. ......+++++|++ .+.|.+||
T Consensus 25 ~~~~~IvG~NGsGKStll~Ai~~ll~~~-~~~~~r~~~~~~li~~~~~~~~~~~~v~~~fq~~~~~~~~~~~~~~~~ltV 103 (251)
T cd03273 25 PQFNAITGLNGSGKSNILDAICFVLGIT-NLSTVRASNLQDLIYKRGQAGITKASVTIVFDNSDKSQSPIGFENYPEITV 103 (251)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhccc-ccccccccCHHHHhhcCCCCCCcEEEEEEEEEcCCcccCcccccCCceEEE
Confidence 4599999999999999999999865321 1345666554 21 10 11234788999985 34567899
Q ss_pred HHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCc--------------------cccccccCCCCCCCCHHHHHHHHH
Q 000979 707 YESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP--------------------LRQSLVGLPGVSGLSTEQRKRLTI 766 (1202)
Q Consensus 707 ~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~--------------------~~~~~~~~~~~~~LSgGqrqRv~i 766 (1202)
.+++......+.... ..+...+.+.++++.+++.. ..+. .+..||||||||++|
T Consensus 104 ~r~I~~~~~~~~~in-~~~~~~~~v~~~L~~vgL~~~~~~~~i~Qg~v~~~~~~~~~~~~-----~~~~lS~G~~qr~~l 177 (251)
T cd03273 104 TRQIVLGGTNKYLIN-GHRAQQQRVQDLFQSVQLNVNNPHFLIMQGRITKVLNMGGVWKE-----SLTELSGGQRSLVAL 177 (251)
T ss_pred EEEEEcCCceEEEEC-CEEeeHHHHHHHHHHcCCCCCCceEEEeehHHHHHHHhHHhhcc-----cccccCHHHHHHHHH
Confidence 988865432111000 11122356788999999851 1122 245799999999999
Q ss_pred HHHHh----hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEe
Q 000979 767 AVELV----ANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 830 (1202)
Q Consensus 767 a~aL~----~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~ 830 (1202)
|++|+ .+|+++++||||+|||+.++..+.+.|+++. +|.|+|++||++ ++.+.+|+++-+.
T Consensus 178 a~al~~~~~~~~~illlDEPt~~ld~~~~~~~~~~l~~~~-~g~~ii~iSH~~--~~~~~~d~v~~~~ 242 (251)
T cd03273 178 SLILALLLFKPAPMYILDEVDAALDLSHTQNIGRMIKTHF-KGSQFIVVSLKE--GMFNNANVLFRTR 242 (251)
T ss_pred HHHHHHhhccCCCEEEEeCCCcCCCHHHHHHHHHHHHHHc-CCCEEEEEECCH--HHHHhCCEEEEEE
Confidence 99998 5789999999999999999999999999985 589999999994 6788999998876
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo |
| >COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.3e-21 Score=226.65 Aligned_cols=126 Identities=25% Similarity=0.339 Sum_probs=102.0
Q ss_pred CCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCC---CEEEE
Q 000979 703 FVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANP---SIIFM 779 (1202)
Q Consensus 703 ~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~aL~~~p---~illl 779 (1202)
.|||.|...|.... +. -.+.-+.|..+||.-. ..|.| ...|||||.|||-+|.+|..+. .+.+|
T Consensus 783 ~MTveEA~~FF~~~------p~---I~rkLqtL~dVGLgYi---~LGQp-atTLSGGEaQRvKLA~EL~k~~tg~TlYiL 849 (935)
T COG0178 783 DMTVEEALEFFEAI------PK---IARKLQTLVDVGLGYI---KLGQP-ATTLSGGEAQRVKLAKELSKRSTGKTLYIL 849 (935)
T ss_pred hccHHHHHHHHhcc------hH---HHHHHHHHHHcCcceE---ecCCc-cccccchHHHHHHHHHHHhhccCCCeEEEe
Confidence 46888888876421 11 1223456667787532 23433 3469999999999999999987 89999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEe-----cCCEEEEEcCCCc
Q 000979 780 DEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK-----RGGQEIYVGPLGR 843 (1202)
Q Consensus 780 DEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~-----~gG~~~~~G~~~~ 843 (1202)
||||+||-....+.+++.|.+|.++|.|||++.|++ ++...+|.|+=|- +||+++..|+|++
T Consensus 850 DEPTTGLH~~Di~kLl~VL~rLvd~GnTViVIEHNL--dVIk~AD~IIDLGPeGG~~GG~iva~GTPee 916 (935)
T COG0178 850 DEPTTGLHFDDIKKLLEVLHRLVDKGNTVIVIEHNL--DVIKTADWIIDLGPEGGDGGGEIVASGTPEE 916 (935)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeccc--ceEeecCEEEEcCCCCCCCCceEEEecCHHH
Confidence 999999999999999999999999999999999997 4789999999883 5789999999854
|
|
| >COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.2e-23 Score=258.53 Aligned_cols=105 Identities=30% Similarity=0.431 Sum_probs=98.1
Q ss_pred HhCCcccccccccCCcccccCccccchhhHHHHHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHhHhCCCEEEEEecCC
Q 000979 53 VLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQP 132 (1202)
Q Consensus 53 ~lgL~~~~dT~VG~~~~~gLSGGQKqRvsIAraLv~~P~ILlLDEpTSGLDs~sa~~vv~~L~~~a~~~~tTiIiaihQp 132 (1202)
+..|+++.||.|| ++|..||||||||+|||||+++||+||+||||||+||+.+|..++++++++. +++||++|| |
T Consensus 448 I~~lp~g~dt~vg-e~G~~LSgGQrQrlaiARall~~~~ILILDEaTSalD~~tE~~I~~~l~~l~-~~rT~iiIa---H 522 (567)
T COG1132 448 IANLPDGYDTIVG-ERGVNLSGGQRQRLAIARALLRNPPILILDEATSALDTETEALIQDALKKLL-KGRTTLIIA---H 522 (567)
T ss_pred HHhCcccccceec-CCCccCCHHHHHHHHHHHHHhcCCCEEEEeccccccCHHhHHHHHHHHHHHh-cCCEEEEEe---c
Confidence 4466889999999 7788899999999999999999999999999999999999999999999765 466888888 9
Q ss_pred ChHHHhhhcceEEecCCcEEEEcCcchHHH
Q 000979 133 APETYDLFDDIILLSDGQIVYQGPRELVLE 162 (1202)
Q Consensus 133 ~~s~~~~fD~IvvL~~G~vvy~G~~~el~~ 162 (1202)
|+++++.+|+|+||++|+++|.|+|+||+.
T Consensus 523 Rlsti~~aD~IiVl~~G~i~e~G~h~eLl~ 552 (567)
T COG1132 523 RLSTIKNADRIIVLDNGRIVERGTHEELLA 552 (567)
T ss_pred cHhHHHhCCEEEEEECCEEEEecCHHHHHH
Confidence 999999999999999999999999999986
|
|
| >COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.6e-22 Score=227.05 Aligned_cols=120 Identities=30% Similarity=0.424 Sum_probs=107.7
Q ss_pred hhhhHHHHHHHHHhCCcccccccccCCcccccCccccchhhHHHHHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHhHh
Q 000979 41 QEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHI 120 (1202)
Q Consensus 41 ~~~~~~v~~il~~lgL~~~~dT~VG~~~~~gLSGGQKqRvsIAraLv~~P~ILlLDEpTSGLDs~sa~~vv~~L~~~a~~ 120 (1202)
.+.++.++++++.+||.+.++..+ +++|||||||++||.||+++|++|||||||||||+.++.++++.|++++++
T Consensus 111 ~~~~~~~~~~l~~~~L~~~~~~~~-----~~lS~G~kqrl~ia~aL~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~ 185 (293)
T COG1131 111 EEAEERIEELLELFGLEDKANKKV-----RTLSGGMKQRLSIALALLHDPELLILDEPTSGLDPESRREIWELLRELAKE 185 (293)
T ss_pred hHHHHHHHHHHHHcCCchhhCcch-----hhcCHHHHHHHHHHHHHhcCCCEEEECCCCcCCCHHHHHHHHHHHHHHHhC
Confidence 456778999999999999666666 589999999999999999999999999999999999999999999999876
Q ss_pred CCCEEEEEecCCChHHHhhhcceEEecCCcEEEEcCcchHHHHHHh
Q 000979 121 NSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLEFFAS 166 (1202)
Q Consensus 121 ~~tTiIiaihQp~~s~~~~fD~IvvL~~G~vvy~G~~~el~~~F~~ 166 (1202)
+++||++++|++. ++.+.||+|++|++|+++++|+.+++...+..
T Consensus 186 g~~tvlissH~l~-e~~~~~d~v~il~~G~~~~~g~~~~l~~~~~~ 230 (293)
T COG1131 186 GGVTILLSTHILE-EAEELCDRVIILNDGKIIAEGTPEELKEKFGG 230 (293)
T ss_pred CCcEEEEeCCcHH-HHHHhCCEEEEEeCCEEEEeCCHHHHHHhhcc
Confidence 6689999988665 88888999999999999999999998876543
|
|
| >COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.86 E-value=5.2e-22 Score=197.47 Aligned_cols=129 Identities=23% Similarity=0.281 Sum_probs=115.4
Q ss_pred CCHHHHHHHhhhhhhhhhHHHHHHHHHhCCcccccccccCCcccccCccccchhhHHHHHhcCCeEeeeeCCCccccHHH
Q 000979 27 PDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSST 106 (1202)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~v~~il~~lgL~~~~dT~VG~~~~~gLSGGQKqRvsIAraLv~~P~ILlLDEpTSGLDs~s 106 (1202)
+++..+.+.-.+...+.+++++++.+.|+|.+|.|+.+| ++|-|+||||+|||||+.+|+|++|||||||||-.+
T Consensus 94 Enl~~Fa~L~~l~~~~~kari~~l~k~l~l~~~~~rRv~-----~~S~G~kqkV~iARAlvh~P~i~vlDEP~sGLDi~~ 168 (245)
T COG4555 94 ENLKYFARLNGLSRKEIKARIAELSKRLQLLEYLDRRVG-----EFSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRT 168 (245)
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHHhChHHHHHHHHh-----hhchhhHHHHHHHHHHhcCCCeEEEcCCCCCccHHH
Confidence 344566666677888999999999999999999999998 699999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhHhCCCEEEEEecCCChHHHhhhcceEEecCCcEEEEcCcchHHH
Q 000979 107 TFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLE 162 (1202)
Q Consensus 107 a~~vv~~L~~~a~~~~tTiIiaihQp~~s~~~~fD~IvvL~~G~vvy~G~~~el~~ 162 (1202)
...+.+.+++.- ..+++||.+.| -..++-.++|+++||.+|++|+.|+.+++.+
T Consensus 169 ~r~~~dfi~q~k-~egr~viFSSH-~m~EvealCDrvivlh~Gevv~~gs~~~l~~ 222 (245)
T COG4555 169 RRKFHDFIKQLK-NEGRAVIFSSH-IMQEVEALCDRVIVLHKGEVVLEGSIEALDA 222 (245)
T ss_pred HHHHHHHHHHhh-cCCcEEEEecc-cHHHHHHhhheEEEEecCcEEEcCCHHHHHH
Confidence 999999998854 46888888855 6778888999999999999999999988864
|
|
| >PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.8e-22 Score=250.18 Aligned_cols=103 Identities=26% Similarity=0.384 Sum_probs=93.7
Q ss_pred CCcccccccccCCcccccCccccchhhHHHHHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHhHhCCCEEEEEecCCCh
Q 000979 55 GLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAP 134 (1202)
Q Consensus 55 gL~~~~dT~VG~~~~~gLSGGQKqRvsIAraLv~~P~ILlLDEpTSGLDs~sa~~vv~~L~~~a~~~~tTiIiaihQp~~ 134 (1202)
.|+++.||.|| +++..|||||||||+|||||+++|+||+||||||+||+.+|..+.++|++.. +++|+|+|| |++
T Consensus 470 ~lp~G~dT~vg-e~G~~LSGGQrQRialARAll~~~~IliLDE~TSaLD~~te~~i~~~l~~~~-~~~TvIiIt---Hrl 544 (588)
T PRK11174 470 LLPQGLDTPIG-DQAAGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAAS-RRQTTLMVT---HQL 544 (588)
T ss_pred hcccccccccc-cCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh-CCCEEEEEe---cCh
Confidence 46679999999 6678899999999999999999999999999999999999999999998864 356666777 777
Q ss_pred HHHhhhcceEEecCCcEEEEcCcchHHH
Q 000979 135 ETYDLFDDIILLSDGQIVYQGPRELVLE 162 (1202)
Q Consensus 135 s~~~~fD~IvvL~~G~vvy~G~~~el~~ 162 (1202)
++++.||+|++|++|+++++|+|+|+++
T Consensus 545 ~~i~~aD~Iivl~~G~i~e~G~~~eL~~ 572 (588)
T PRK11174 545 EDLAQWDQIWVMQDGQIVQQGDYAELSQ 572 (588)
T ss_pred HHHHhCCEEEEEeCCeEeecCCHHHHHh
Confidence 9999999999999999999999999985
|
|
| >COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.85 E-value=9.8e-22 Score=227.11 Aligned_cols=114 Identities=31% Similarity=0.388 Sum_probs=102.1
Q ss_pred hHHHHHHHHHhCC------cccccccccCCcccccCccccchhhHHHHHhcCCeEeeeeCCCccccHHHHHHHHHHHHHH
Q 000979 44 NVITDYYLKVLGL------DVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQN 117 (1202)
Q Consensus 44 ~~~v~~il~~lgL------~~~~dT~VG~~~~~gLSGGQKqRvsIAraLv~~P~ILlLDEpTSGLDs~sa~~vv~~L~~~ 117 (1202)
++.+.++++.-|| +++.||.|| ++|++|||||+|||++||||+++++++++||||++||.+||..|.+.|.++
T Consensus 424 ~e~i~~al~~a~l~~~v~~p~GLdt~ig-e~G~~LSgGQ~QRlaLARAll~~~~l~llDEpTA~LD~etE~~i~~~l~~l 502 (559)
T COG4988 424 DEEIIAALDQAGLLEFVPKPDGLDTVIG-EGGAGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQIILQALQEL 502 (559)
T ss_pred HHHHHHHHHHhcHHHhhcCCCcccchhc-cCCCCCCHHHHHHHHHHHHhcCCCCEEEecCCccCCCHhHHHHHHHHHHHH
Confidence 3445556665555 557899999 778999999999999999999999999999999999999999999999998
Q ss_pred hHhCCCEEEEEecCCChHHHhhhcceEEecCCcEEEEcCcchHHH
Q 000979 118 IHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLE 162 (1202)
Q Consensus 118 a~~~~tTiIiaihQp~~s~~~~fD~IvvL~~G~vvy~G~~~el~~ 162 (1202)
++ ++|++++| ||+...+.+|+|+||++|+++++|+|+++.+
T Consensus 503 ~~-~ktvl~it---Hrl~~~~~~D~I~vld~G~l~~~g~~~~L~~ 543 (559)
T COG4988 503 AK-QKTVLVIT---HRLEDAADADRIVVLDNGRLVEQGTHEELSE 543 (559)
T ss_pred Hh-CCeEEEEE---cChHHHhcCCEEEEecCCceeccCCHHHHhh
Confidence 74 67888888 9999999999999999999999999999974
|
|
| >COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.9e-21 Score=191.88 Aligned_cols=225 Identities=16% Similarity=0.203 Sum_probs=164.2
Q ss_pred EEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCc-e-EEEEEEEcCccC
Q 000979 605 TFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG-Y-ITGNITISGYPK 682 (1202)
Q Consensus 605 ~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~-~-~~G~i~~~g~~~ 682 (1202)
..+|++....++ .+..+++++||+++..||+-+++|.||||||-..|+|+|..+.. . ......+++.+.
T Consensus 5 DIrnL~IE~~Ts---------qG~vK~VD~v~ltlnEGEi~GLVGESGSGKSLiAK~Ic~v~kdnW~vTADR~Rf~~idL 75 (330)
T COG4170 5 DIRNLTIEFKTS---------QGWVKAVDRVSMTLNEGEIRGLVGESGSGKSLIAKAICGVNKDNWRVTADRMRFDDIDL 75 (330)
T ss_pred cccceEEEEecC---------CCceEeeeeeeeeeccceeeeeeccCCCchhHHHHHHhcccccceEEEhhhcccccchh
Confidence 345666555432 46677999999999999999999999999999999999954321 1 122334444332
Q ss_pred ---Cccccc----ceEEEeecCCC--CCCCCCHHHHHHHHHHccCCC-CCC--HHHHHHHHHHHHHHcCCCccccccccC
Q 000979 683 ---KQETFA----RISGYCEQNDI--HSPFVTIYESLLFSAWLRLSP-EVD--SETRKMFIDEVMELVELNPLRQSLVGL 750 (1202)
Q Consensus 683 ---~~~~~~----~~~~~v~q~~~--~~~~lTv~e~l~~~~~~~~~~-~~~--~~~~~~~~~~~l~~l~l~~~~~~~~~~ 750 (1202)
..+..| +.+++++|++. +.|.-+|...|.-..-...-+ ... -.=++++.-+++..+|+.+..|-....
T Consensus 76 L~L~Pr~RRk~ig~~isMIFQeP~sCLDPS~~iG~QlIq~IP~wTfkgrWWq~F~WrKrrAIeLLHrVGIKdHkDIM~SY 155 (330)
T COG4170 76 LRLSPRERRKLVGHNVSMIFQEPQSCLDPSERVGRQLIQNIPAWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDIMRSY 155 (330)
T ss_pred hcCChHHhhhhhccchhhhhcCchhhcChHHHHHHHHHhhCccccccchHhhhhchhHHHHHHHHHHhccccHHHHHHhC
Confidence 122223 35678999974 445444444332111000000 000 011345567899999999988877665
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCCHHHHHhcceEEEE
Q 000979 751 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLM 829 (1202)
Q Consensus 751 ~~~~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~v~~l 829 (1202)
| .+|.-||-|+|.||.|++.+|++|+.||||+.+|+.++.++.++|.++.+ +|.||++++||.. .+-+-||++-+|
T Consensus 156 P--~ElTeGE~QKVMIA~A~AnqPrLLIADEPTN~~e~~Tq~QifRLLs~mNQn~~TtILL~s~Dl~-~is~W~d~i~Vl 232 (330)
T COG4170 156 P--YELTEGECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLSRLNQNSNTTILLISHDLQ-MISQWADKINVL 232 (330)
T ss_pred c--chhccCcceeeeeehhhccCCceEeccCCCcccCccHHHHHHHHHHHhhccCCceEEEEcccHH-HHHHHhhheEEE
Confidence 5 47999999999999999999999999999999999999999999999864 4899999999987 588999999999
Q ss_pred ecCCEEEEEcCCC
Q 000979 830 KRGGQEIYVGPLG 842 (1202)
Q Consensus 830 ~~gG~~~~~G~~~ 842 (1202)
.- |+.+..+|.+
T Consensus 233 YC-GQ~~ESa~~e 244 (330)
T COG4170 233 YC-GQTVESAPSE 244 (330)
T ss_pred Ee-cccccccchh
Confidence 86 7888888764
|
|
| >KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.85 E-value=5.6e-21 Score=215.71 Aligned_cols=213 Identities=18% Similarity=0.210 Sum_probs=137.5
Q ss_pred CceeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCc
Q 000979 601 PHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGY 680 (1202)
Q Consensus 601 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~ 680 (1202)
...+.++|++++++ ++.+++|++|++.+|+-++|+|||||||||+|++|+|+..|-+..=.++.-..
T Consensus 73 s~dvk~~sls~s~~-------------g~~l~kd~~~El~~g~rygLiG~nG~Gkst~L~~i~~~e~P~p~~~d~y~ls~ 139 (614)
T KOG0927|consen 73 SRDVKIESLSLSFH-------------GVELIKDVTLELNRGRRYGLIGPNGSGKSTFLRAIAGREVPIPEHIDFYLLSR 139 (614)
T ss_pred cccceeeeeeeccC-------------CceeeeeeeEEecCCceEEEEcCCCCcHhHHHHHHhcCCCCCCcccchhhhcc
Confidence 34577788877653 46789999999999999999999999999999999998665443333333332
Q ss_pred cCCcccccceEEEeecCCCCCCCCCHHHHHHHHHH-ccCC----------------CCCCHHHHHHHHHHHHHHcCC-Cc
Q 000979 681 PKKQETFARISGYCEQNDIHSPFVTIYESLLFSAW-LRLS----------------PEVDSETRKMFIDEVMELVEL-NP 742 (1202)
Q Consensus 681 ~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~-~~~~----------------~~~~~~~~~~~~~~~l~~l~l-~~ 742 (1202)
........ .+-++.+ +.-..+..+.+... +... ...+.+..+.++.+++..+|. .+
T Consensus 140 e~~ps~~~-av~~v~~-----~~~~e~~rle~~~E~l~~~~d~~~~~~l~~~~~r~~~~d~~~~~~k~~~il~glgf~~~ 213 (614)
T KOG0927|consen 140 EIEPSEKQ-AVQAVVM-----ETDHERKRLEYLAEDLAQACDDKEKDELDELYERLDEMDNDTFEAKAAKILHGLGFLSE 213 (614)
T ss_pred cCCCchHH-HHHHHhh-----hhHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHhhCchhHHHHHHHHHHhcCCCHh
Confidence 22211110 0000100 00011111111100 0000 011112222334455555554 33
Q ss_pred cccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHh
Q 000979 743 LRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEA 822 (1202)
Q Consensus 743 ~~~~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~ 822 (1202)
..++. ..++|||+|+|+++||+|..+|++|+|||||+|||..+...+-+.|.+.- .+ ++|+++|.-+ .+-..
T Consensus 214 m~~k~-----~~~~SgGwrmR~aLAr~Lf~kP~LLLLDEPtnhLDleA~~wLee~L~k~d-~~-~lVi~sh~QD-fln~v 285 (614)
T KOG0927|consen 214 MQDKK-----VKDLSGGWRMRAALARALFQKPDLLLLDEPTNHLDLEAIVWLEEYLAKYD-RI-ILVIVSHSQD-FLNGV 285 (614)
T ss_pred HHHHH-----hhccCchHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHhcc-Cc-eEEEEecchh-hhhhH
Confidence 44444 46799999999999999999999999999999999999999998887642 12 8999999754 57788
Q ss_pred cceEEEEecCCE-EEEEcCC
Q 000979 823 FDELFLMKRGGQ-EIYVGPL 841 (1202)
Q Consensus 823 ~d~v~~l~~gG~-~~~~G~~ 841 (1202)
|.+|+-|.+ ++ +.|.|+-
T Consensus 286 CT~Ii~l~~-kkl~~y~Gny 304 (614)
T KOG0927|consen 286 CTNIIHLDN-KKLIYYEGNY 304 (614)
T ss_pred hhhhheecc-cceeeecCCH
Confidence 999999986 56 4555664
|
|
| >COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.1e-20 Score=194.72 Aligned_cols=138 Identities=25% Similarity=0.319 Sum_probs=121.5
Q ss_pred HhcCCCCC----CCHHHHHHHhhhhhhhhhHHHHHHHHHhCCcc--cccccccCCcccccCccccchhhHHHHHhcCCeE
Q 000979 19 KAAGIKPD----PDIDVYMKAIATEGQEANVITDYYLKVLGLDV--CADTMVGDEMIRGISGGQKKRVTTGEMMVGPALA 92 (1202)
Q Consensus 19 ~~~~~~~~----~~~~~~~~~~~~~~~~~~~~v~~il~~lgL~~--~~dT~VG~~~~~gLSGGQKqRvsIAraLv~~P~I 92 (1202)
...|+-|+ +|+..-.+...+.+++.+++++++++.+||+. -+| ....+|||||+|||-|||||..+|+|
T Consensus 82 QqigLFPh~Tv~eNIa~VP~L~~w~k~~i~~r~~ELl~lvgL~p~~~~~-----RyP~eLSGGQQQRVGv~RALAadP~i 156 (309)
T COG1125 82 QQIGLFPHLTVAENIATVPKLLGWDKERIKKRADELLDLVGLDPSEYAD-----RYPHELSGGQQQRVGVARALAADPPI 156 (309)
T ss_pred hhcccCCCccHHHHHHhhhhhcCCCHHHHHHHHHHHHHHhCCCHHHHhh-----cCchhcCcchhhHHHHHHHHhcCCCe
Confidence 44567775 45556666778899999999999999999975 333 34579999999999999999999999
Q ss_pred eeeeCCCccccHHHHHHHHHHHHHHhHhCCCEEEEEecCCChHHHhhhcceEEecCCcEEEEcCcchHHH
Q 000979 93 LFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLE 162 (1202)
Q Consensus 93 LlLDEpTSGLDs~sa~~vv~~L~~~a~~~~tTiIiaihQp~~s~~~~fD~IvvL~~G~vvy~G~~~el~~ 162 (1202)
|++|||-||||+.++.++++.++++-++-++|||..+| --.|.++++|||+||++|+++.+|++++++.
T Consensus 157 lLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTH-DidEA~kLadri~vm~~G~i~Q~~~P~~il~ 225 (309)
T COG1125 157 LLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTH-DIDEALKLADRIAVMDAGEIVQYDTPDEILA 225 (309)
T ss_pred EeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEec-CHHHHHhhhceEEEecCCeEEEeCCHHHHHh
Confidence 99999999999999999999999988778889888766 8889999999999999999999999999984
|
|
| >cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.5e-20 Score=199.40 Aligned_cols=169 Identities=15% Similarity=0.131 Sum_probs=116.8
Q ss_pred eecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCc---eEEEEEEEcCccCCcccccceEEEeecCCCCCCCCCHHH
Q 000979 632 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG---YITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYE 708 (1202)
Q Consensus 632 L~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~---~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~lTv~e 708 (1202)
++++++.+.+| +.+|+||||||||||+.+|.....+. ...|.. +... +........+.+++|+....+
T Consensus 12 ~~~~~l~f~~g-l~~i~G~NGsGKStll~ai~~~l~~~~~~~~r~~~-~~~~-i~~~~~~~~i~~~~~~~~~~~------ 82 (198)
T cd03276 12 HRHLQIEFGPR-VNFIVGNNGSGKSAILTALTIGLGGKASDTNRGSS-LKDL-IKDGESSAKITVTLKNQGLDA------ 82 (198)
T ss_pred eeeeEEecCCC-eEEEECCCCCcHHHHHHHHHHHhcCCccccccccc-HHHH-hhCCCCeEEEEEEEEcCCccC------
Confidence 56778888887 88999999999999999997321110 001110 0000 011112345677777655443
Q ss_pred HHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHH----hhCCCEEEEeCCCC
Q 000979 709 SLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVEL----VANPSIIFMDEPTS 784 (1202)
Q Consensus 709 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~aL----~~~p~illlDEPts 784 (1202)
| .... ..++.++++++. .+..++. ++.||+|||||++||++| +.+|++++|||||+
T Consensus 83 ~-----------~~~~-~~~~~~~~~l~~---~~~~~~~-----~~~lS~G~k~r~~ia~al~~~~~~~p~illlDEP~~ 142 (198)
T cd03276 83 N-----------PLCV-LSQDMARSFLTS---NKAAVRD-----VKTLSGGERSFSTVCLLLSLWEVMESPFRCLDEFDV 142 (198)
T ss_pred C-----------cCCH-HHHHHHHHHhcc---ccccCCc-----ccccChhHHHHHHHHHHHHHhcccCCCEEEecCccc
Confidence 1 0111 123446666665 4444444 357999999999999999 58999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhC---CCEEEEEecCCCHHHHHhcceEEEEec
Q 000979 785 GLDARAAAIVMRTVRNTVDT---GRTVVCTIHQPSIDIFEAFDELFLMKR 831 (1202)
Q Consensus 785 gLD~~~~~~v~~~l~~~~~~---g~tvi~~~H~~~~~~~~~~d~v~~l~~ 831 (1202)
|||+.++..+.+.|+++.++ +.|||+++|+++ ++.+ +|+|-+|..
T Consensus 143 glD~~~~~~~~~~l~~~~~~~~~~~~iii~th~~~-~i~~-~d~v~~~~~ 190 (198)
T cd03276 143 FMDMVNRKISTDLLVKEAKKQPGRQFIFITPQDIS-GLAS-SDDVKVFRM 190 (198)
T ss_pred ccCHHHHHHHHHHHHHHHhcCCCcEEEEEECCccc-cccc-ccceeEEEe
Confidence 99999999999999987643 368999999987 4544 599999975
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for |
| >TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Probab=99.84 E-value=4.2e-21 Score=243.74 Aligned_cols=142 Identities=23% Similarity=0.339 Sum_probs=110.9
Q ss_pred HHHHhcCCCCCCCHH--HHHHH-hhhhhh-hhhHHHHHHHHHhC-------CcccccccccCCcccccCccccchhhHHH
Q 000979 16 RREKAAGIKPDPDID--VYMKA-IATEGQ-EANVITDYYLKVLG-------LDVCADTMVGDEMIRGISGGQKKRVTTGE 84 (1202)
Q Consensus 16 ~~~~~~~~~~~~~~~--~~~~~-~~~~~~-~~~~~v~~il~~lg-------L~~~~dT~VG~~~~~gLSGGQKqRvsIAr 84 (1202)
..|+..+.+||.... .+.++ +...+. -.++.+.+.++..| |++..||.|| +++..||||||||++|||
T Consensus 536 ~lr~~i~~v~Q~~~lf~~TI~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~-e~G~~LSgGQrQRlalAR 614 (694)
T TIGR03375 536 DLRRNIGYVPQDPRLFYGTLRDNIALGAPYADDEEILRAAELAGVTEFVRRHPDGLDMQIG-ERGRSLSGGQRQAVALAR 614 (694)
T ss_pred HHHhccEEECCChhhhhhhHHHHHhCCCCCCCHHHHHHHHHHcChHHHHHhCcccccceec-CCCCCCCHHHHHHHHHHH
Confidence 345667777764332 22222 322221 12333444555444 5678999999 667889999999999999
Q ss_pred HHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHhHhCCCEEEEEecCCChHHHhhhcceEEecCCcEEEEcCcchHHH
Q 000979 85 MMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLE 162 (1202)
Q Consensus 85 aLv~~P~ILlLDEpTSGLDs~sa~~vv~~L~~~a~~~~tTiIiaihQp~~s~~~~fD~IvvL~~G~vvy~G~~~el~~ 162 (1202)
||+++|+||+||||||+||+.++..+.+.|++.. .++|+|++| ||+++.+.+|+|++|++|+++++|+|+|+++
T Consensus 615 all~~p~iliLDE~Ts~LD~~te~~i~~~l~~~~-~~~T~iiIt---Hrl~~~~~~D~iivl~~G~i~e~G~~~eLl~ 688 (694)
T TIGR03375 615 ALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWL-AGKTLVLVT---HRTSLLDLVDRIIVMDNGRIVADGPKDQVLE 688 (694)
T ss_pred HHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHh-CCCEEEEEe---cCHHHHHhCCEEEEEeCCEEEeeCCHHHHHH
Confidence 9999999999999999999999999999998865 356777777 7889999999999999999999999999985
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export. |
| >TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.84 E-value=4e-21 Score=243.58 Aligned_cols=110 Identities=24% Similarity=0.305 Sum_probs=96.7
Q ss_pred HHHHHHHHhC-------CcccccccccCCcccccCccccchhhHHHHHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHh
Q 000979 46 ITDYYLKVLG-------LDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNI 118 (1202)
Q Consensus 46 ~v~~il~~lg-------L~~~~dT~VG~~~~~gLSGGQKqRvsIAraLv~~P~ILlLDEpTSGLDs~sa~~vv~~L~~~a 118 (1202)
.+.+.++..| |+++.||.|| +++..|||||||||+|||||+++|+||+||||||+||+.+|.++.+.|++.
T Consensus 557 ~i~~al~~a~l~~~i~~lp~G~dt~ig-e~G~~LSGGQrQRialARAll~~p~iLiLDEpTS~LD~~te~~i~~~L~~~- 634 (686)
T TIGR03797 557 EAWEAARMAGLAEDIRAMPMGMHTVIS-EGGGTLSGGQRQRLLIARALVRKPRILLFDEATSALDNRTQAIVSESLERL- 634 (686)
T ss_pred HHHHHHHHcCcHHHHHhcccccccccc-CCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHh-
Confidence 3445555554 5668899999 667889999999999999999999999999999999999999999999875
Q ss_pred HhCCCEEEEEecCCChHHHhhhcceEEecCCcEEEEcCcchHHH
Q 000979 119 HINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLE 162 (1202)
Q Consensus 119 ~~~~tTiIiaihQp~~s~~~~fD~IvvL~~G~vvy~G~~~el~~ 162 (1202)
+.|+|++| ||+++++.+|+|+||++|+++++|+|+++++
T Consensus 635 --~~T~IiIt---Hr~~~i~~~D~Iivl~~G~iv~~G~~~~Ll~ 673 (686)
T TIGR03797 635 --KVTRIVIA---HRLSTIRNADRIYVLDAGRVVQQGTYDELMA 673 (686)
T ss_pred --CCeEEEEe---cChHHHHcCCEEEEEECCEEEEECCHHHHHh
Confidence 45667777 7889999999999999999999999999985
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif |
| >TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.84 E-value=4.3e-21 Score=244.47 Aligned_cols=142 Identities=19% Similarity=0.174 Sum_probs=110.2
Q ss_pred HHHHHHhcCCCCCCCHH--HHHHH-hhhhh-hhhhHHHHHHHHHhC-------CcccccccccCCcccccCccccchhhH
Q 000979 14 LARREKAAGIKPDPDID--VYMKA-IATEG-QEANVITDYYLKVLG-------LDVCADTMVGDEMIRGISGGQKKRVTT 82 (1202)
Q Consensus 14 ~~~~~~~~~~~~~~~~~--~~~~~-~~~~~-~~~~~~v~~il~~lg-------L~~~~dT~VG~~~~~gLSGGQKqRvsI 82 (1202)
....|+..+..||.... .+.++ +.... +..++.+.+.++..| |+++.||.|| ++|..|||||||||+|
T Consensus 548 ~~~lr~~i~~v~Q~~~lf~gTi~eNi~l~~~~~~~~~i~~al~~~~l~~~i~~lp~gl~t~i~-e~G~~LSGGQrQRiaL 626 (710)
T TIGR03796 548 REVLANSVAMVDQDIFLFEGTVRDNLTLWDPTIPDADLVRACKDAAIHDVITSRPGGYDAELA-EGGANLSGGQRQRLEI 626 (710)
T ss_pred HHHHHhheeEEecCChhhhccHHHHhhCCCCCCCHHHHHHHHHHhCCHHHHHhCcCcccceec-cCCCCCCHHHHHHHHH
Confidence 33456777877774332 22221 22211 112333444555544 5668999999 6678999999999999
Q ss_pred HHHHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHhHhCCCEEEEEecCCChHHHhhhcceEEecCCcEEEEcCcchHHH
Q 000979 83 GEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLE 162 (1202)
Q Consensus 83 AraLv~~P~ILlLDEpTSGLDs~sa~~vv~~L~~~a~~~~tTiIiaihQp~~s~~~~fD~IvvL~~G~vvy~G~~~el~~ 162 (1202)
||||+++|+||+||||||+||+.+|.++.+.|++ .++|+|++| ||+++++.+|+|++|++|+++++|+|+|+++
T Consensus 627 ARall~~p~iliLDEptS~LD~~te~~i~~~l~~---~~~T~Iiit---Hrl~~i~~~D~Iivl~~G~i~~~G~~~~Ll~ 700 (710)
T TIGR03796 627 ARALVRNPSILILDEATSALDPETEKIIDDNLRR---RGCTCIIVA---HRLSTIRDCDEIIVLERGKVVQRGTHEELWA 700 (710)
T ss_pred HHHHhhCCCEEEEECccccCCHHHHHHHHHHHHh---cCCEEEEEe---cCHHHHHhCCEEEEEeCCEEEEecCHHHHHH
Confidence 9999999999999999999999999999999976 356777777 8889999999999999999999999999985
|
This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin. |
| >PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=6.2e-21 Score=238.20 Aligned_cols=142 Identities=21% Similarity=0.190 Sum_probs=111.9
Q ss_pred HHHHhcCCCCCCCH--HHHHH-HhhhhhhhhhHHHHHHHHHhC-------CcccccccccCCcccccCccccchhhHHHH
Q 000979 16 RREKAAGIKPDPDI--DVYMK-AIATEGQEANVITDYYLKVLG-------LDVCADTMVGDEMIRGISGGQKKRVTTGEM 85 (1202)
Q Consensus 16 ~~~~~~~~~~~~~~--~~~~~-~~~~~~~~~~~~v~~il~~lg-------L~~~~dT~VG~~~~~gLSGGQKqRvsIAra 85 (1202)
..++..+..||+.. +.+.+ .++..+...++.+++.++..| |++..||.|| +.+..||||||||++||||
T Consensus 412 ~l~~~i~~v~Q~~~lF~~Ti~~NI~~~~~~~d~~i~~a~~~~gl~~~i~~lp~Gldt~i~-e~g~~LSGGqrQRialARa 490 (592)
T PRK10790 412 VLRQGVAMVQQDPVVLADTFLANVTLGRDISEEQVWQALETVQLAELARSLPDGLYTPLG-EQGNNLSVGQKQLLALARV 490 (592)
T ss_pred HHHhheEEEccCCccccchHHHHHHhCCCCCHHHHHHHHHHcCcHHHHHhcccccccccc-CCCCCCCHHHHHHHHHHHH
Confidence 34566676776422 12222 233222223445677777777 5568899999 5678899999999999999
Q ss_pred HhcCCeEeeeeCCCccccHHHHHHHHHHHHHHhHhCCCEEEEEecCCChHHHhhhcceEEecCCcEEEEcCcchHHH
Q 000979 86 MVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLE 162 (1202)
Q Consensus 86 Lv~~P~ILlLDEpTSGLDs~sa~~vv~~L~~~a~~~~tTiIiaihQp~~s~~~~fD~IvvL~~G~vvy~G~~~el~~ 162 (1202)
|+++|+||+||||||+||+.++..+.+.|++.. .++|+|++| ||+++.+.+|+|++|++|++++.|+|+|+++
T Consensus 491 Ll~~~~illlDEpts~LD~~t~~~i~~~l~~~~-~~~tvIivt---Hr~~~l~~~D~ii~l~~G~i~~~G~~~~L~~ 563 (592)
T PRK10790 491 LVQTPQILILDEATANIDSGTEQAIQQALAAVR-EHTTLVVIA---HRLSTIVEADTILVLHRGQAVEQGTHQQLLA 563 (592)
T ss_pred HHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHh-CCCEEEEEe---cchHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 999999999999999999999999999999865 356666777 7779999999999999999999999999984
|
|
| >PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=99.83 E-value=7.3e-21 Score=235.61 Aligned_cols=141 Identities=23% Similarity=0.340 Sum_probs=110.3
Q ss_pred HHHhcCCCCCCCHH--HHHH-Hhhhhh-hhhhHHHHHHHHHhCCc------ccccccccCCcccccCccccchhhHHHHH
Q 000979 17 REKAAGIKPDPDID--VYMK-AIATEG-QEANVITDYYLKVLGLD------VCADTMVGDEMIRGISGGQKKRVTTGEMM 86 (1202)
Q Consensus 17 ~~~~~~~~~~~~~~--~~~~-~~~~~~-~~~~~~v~~il~~lgL~------~~~dT~VG~~~~~gLSGGQKqRvsIAraL 86 (1202)
.++..+..||+... .+.+ .+.... +..++.+++.++..||. ++.||.|| ++++.||||||||++|||||
T Consensus 412 ~r~~i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~i~~al~~~~l~~~i~~p~GldT~vg-e~g~~LSgGqrqRialARal 490 (574)
T PRK11160 412 LRQAISVVSQRVHLFSATLRDNLLLAAPNASDEALIEVLQQVGLEKLLEDDKGLNAWLG-EGGRQLSGGEQRRLGIARAL 490 (574)
T ss_pred HHhheeEEcccchhhcccHHHHhhcCCCccCHHHHHHHHHHcCCHHHHcCccccCchhc-CCCCCCCHHHHHHHHHHHHH
Confidence 45556666664322 1111 222211 22344567778888774 57899999 66788999999999999999
Q ss_pred hcCCeEeeeeCCCccccHHHHHHHHHHHHHHhHhCCCEEEEEecCCChHHHhhhcceEEecCCcEEEEcCcchHHH
Q 000979 87 VGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLE 162 (1202)
Q Consensus 87 v~~P~ILlLDEpTSGLDs~sa~~vv~~L~~~a~~~~tTiIiaihQp~~s~~~~fD~IvvL~~G~vvy~G~~~el~~ 162 (1202)
+++|+||+||||||+||+.++..+.+.|++.. +++|+|++| |++++.+.+|+|++|++|++++.|+|+|+++
T Consensus 491 l~~~~ililDE~ts~lD~~t~~~i~~~l~~~~-~~~tviiit---Hr~~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 562 (574)
T PRK11160 491 LHDAPLLLLDEPTEGLDAETERQILELLAEHA-QNKTVLMIT---HRLTGLEQFDRICVMDNGQIIEQGTHQELLA 562 (574)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHc-CCCEEEEEe---cChhHHHhCCEEEEEeCCeEEEeCCHHHHHh
Confidence 99999999999999999999999999999864 345555666 6668899999999999999999999999985
|
|
| >KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=99.83 E-value=4.8e-20 Score=209.68 Aligned_cols=207 Identities=23% Similarity=0.280 Sum_probs=156.1
Q ss_pred ceeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCcc
Q 000979 602 HSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP 681 (1202)
Q Consensus 602 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 681 (1202)
.-+++++|+..-|. .+..+++|+|++|+.|+-+.|+||||||||+|+|+|+|.-+ ..+|.+.--...
T Consensus 432 n~i~~e~v~l~tPt-----------~g~~lie~Ls~~V~~g~~LLItG~sG~GKtSLlRvlggLWp--~~~G~l~k~~~~ 498 (659)
T KOG0060|consen 432 NAIEFEEVSLSTPT-----------NGDLLIENLSLEVPSGQNLLITGPSGCGKTSLLRVLGGLWP--STGGKLTKPTDG 498 (659)
T ss_pred ceEEeeeeeecCCC-----------CCceeeeeeeeEecCCCeEEEECCCCCchhHHHHHHhcccc--cCCCeEEecccC
Confidence 56899999887542 14568899999999999999999999999999999999754 235666533221
Q ss_pred CCcccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCC------CCCC
Q 000979 682 KKQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLP------GVSG 755 (1202)
Q Consensus 682 ~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~------~~~~ 755 (1202)
. -+.+-|+||.|... .-|.||.+.|...--.+.. +...++++.+.++.++|.|..++.-|.. ....
T Consensus 499 ~-----~~~lfflPQrPYmt-~GTLRdQvIYP~~~~~~~~--~~~~d~~i~r~Le~v~L~hl~~r~ggld~~~~~dW~dv 570 (659)
T KOG0060|consen 499 G-----PKDLFFLPQRPYMT-LGTLRDQVIYPLKAEDMDS--KSASDEDILRILENVQLGHLLEREGGLDQQVDWDWMDV 570 (659)
T ss_pred C-----CCceEEecCCCCcc-ccchhheeeccCccccccc--cCCCHHHHHHHHHHhhhhhHHHHhCCCCchhhccHHhh
Confidence 1 13478999988653 4599999988632111111 1112234678888888888766654432 1245
Q ss_pred CCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCCE
Q 000979 756 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQ 834 (1202)
Q Consensus 756 LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~ 834 (1202)
||+||+||++.||-+.++|++-+|||.||++|...+..+.+.+++ .|.|.|-+.|..+ +.+.=|.++-|+.+|+
T Consensus 571 LS~GEqQRLa~ARLfy~kPk~AiLDE~TSAv~~dvE~~~Yr~~r~---~giT~iSVgHRkS--L~kfHd~~L~~~g~g~ 644 (659)
T KOG0060|consen 571 LSPGEQQRLAFARLFYHKPKFAILDECTSAVTEDVEGALYRKCRE---MGITFISVGHRKS--LWKFHDYVLRMDGRGS 644 (659)
T ss_pred cCHHHHHHHHHHHHHhcCCceEEeechhhhccHHHHHHHHHHHHH---cCCeEEEeccHHH--HHhhhhEEEEecCCCc
Confidence 999999999999999999999999999999999999999988865 4999999999976 4555588888874443
|
|
| >COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.83 E-value=9.8e-21 Score=203.23 Aligned_cols=127 Identities=21% Similarity=0.308 Sum_probs=110.4
Q ss_pred HHHHHHhhhhhhhhhHHHHHHHHHhCCcccccccccCCcccccCccccchhhHHHHHhcCCeEeeeeCCCccccHHHHHH
Q 000979 30 DVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQ 109 (1202)
Q Consensus 30 ~~~~~~~~~~~~~~~~~v~~il~~lgL~~~~dT~VG~~~~~gLSGGQKqRvsIAraLv~~P~ILlLDEpTSGLDs~sa~~ 109 (1202)
..-........++.+++++++++..||.+.+|... ..||||||||||||.+|+.+|+||+|||||||||+.+..+
T Consensus 102 afg~~n~g~~~~e~~~rv~~~l~~vgl~~~~~r~p-----~~LSGGqkqRvaIA~vLa~~P~iliLDEPta~LD~~~~~~ 176 (235)
T COG1122 102 AFGLENLGLPREEIEERVAEALELVGLEELLDRPP-----FNLSGGQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRRE 176 (235)
T ss_pred hhchhhcCCCHHHHHHHHHHHHHHcCchhhccCCc-----cccCCcceeeHHhhHHHHcCCCEEEEcCCCCCCCHHHHHH
Confidence 34455567777889999999999999999988876 5799999999999999999999999999999999999999
Q ss_pred HHHHHHHHhHhCCCEEEEEecCCChHHHhhhcceEEecCCcEEEEcCcchHHH
Q 000979 110 IVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLE 162 (1202)
Q Consensus 110 vv~~L~~~a~~~~tTiIiaihQp~~s~~~~fD~IvvL~~G~vvy~G~~~el~~ 162 (1202)
+++.++++...++.|+|+.+| ....+...+|++++|++|+++++|++.++.+
T Consensus 177 l~~~l~~L~~~~~~tii~~tH-d~~~~~~~ad~v~vl~~G~i~~~g~p~~i~~ 228 (235)
T COG1122 177 LLELLKKLKEEGGKTIIIVTH-DLELVLEYADRVVVLDDGKILADGDPAEIFN 228 (235)
T ss_pred HHHHHHHHHhcCCCeEEEEeC-cHHHHHhhCCEEEEEECCEEeecCCHHHHhh
Confidence 999999988765677777655 4446667799999999999999999877654
|
|
| >TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.83 E-value=8.2e-21 Score=216.99 Aligned_cols=117 Identities=23% Similarity=0.305 Sum_probs=103.2
Q ss_pred hhhhhhHHHHHHHHHhCCcccccccccCCcccccCccccchhhHHHHHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHh
Q 000979 39 EGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNI 118 (1202)
Q Consensus 39 ~~~~~~~~v~~il~~lgL~~~~dT~VG~~~~~gLSGGQKqRvsIAraLv~~P~ILlLDEpTSGLDs~sa~~vv~~L~~~a 118 (1202)
.+.+.+++++++++.+||.+..|... ++|||||||||+|||||+.+|+||+|||||||||+.++..+++.|+++.
T Consensus 113 ~~~~~~~~v~e~l~~vgL~~~~~~~~-----~~LSgGqkQRV~IARAL~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~ 187 (343)
T TIGR02314 113 PKDEIKRKVTELLALVGLGDKHDSYP-----SNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTQSILELLKEIN 187 (343)
T ss_pred CHHHHHHHHHHHHHHcCCchhhhCCh-----hhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHH
Confidence 34455667889999999999888776 4799999999999999999999999999999999999999999999987
Q ss_pred HhCCCEEEEEecCCChHHHhhhcceEEecCCcEEEEcCcchHH
Q 000979 119 HINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVL 161 (1202)
Q Consensus 119 ~~~~tTiIiaihQp~~s~~~~fD~IvvL~~G~vvy~G~~~el~ 161 (1202)
++.+.|||+++|+. ..+.+.+|+|++|++|++++.|+++++.
T Consensus 188 ~~~g~tiiliTH~~-~~v~~~~d~v~vl~~G~iv~~g~~~~v~ 229 (343)
T TIGR02314 188 RRLGLTILLITHEM-DVVKRICDCVAVISNGELIEQGTVSEIF 229 (343)
T ss_pred HhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 65578888877754 4666889999999999999999998875
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. |
| >TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Probab=99.83 E-value=7.6e-21 Score=241.94 Aligned_cols=141 Identities=21% Similarity=0.219 Sum_probs=109.0
Q ss_pred HHHHhcCCCCCCCHH--HHHHH-hhhh--hhhhhHHHHHHHHHhC-------CcccccccccCCcccccCccccchhhHH
Q 000979 16 RREKAAGIKPDPDID--VYMKA-IATE--GQEANVITDYYLKVLG-------LDVCADTMVGDEMIRGISGGQKKRVTTG 83 (1202)
Q Consensus 16 ~~~~~~~~~~~~~~~--~~~~~-~~~~--~~~~~~~v~~il~~lg-------L~~~~dT~VG~~~~~gLSGGQKqRvsIA 83 (1202)
..|+..+..||.... .+.++ +..- ....++.+.+.++..| |+++.||.|| +++..|||||||||+||
T Consensus 545 ~lr~~i~~v~Q~~~lf~gTI~eNi~l~~~~~~~~~~i~~a~~~a~l~~~i~~lp~gldt~i~-e~G~~LSgGQrQRialA 623 (708)
T TIGR01193 545 TLRQFINYLPQEPYIFSGSILENLLLGAKENVSQDEIWAACEIAEIKDDIENMPLGYQTELS-EEGSSISGGQKQRIALA 623 (708)
T ss_pred HHHHheEEEecCceehhHHHHHHHhccCCCCCCHHHHHHHHHHhCCHHHHHhcccccCcEec-CCCCCCCHHHHHHHHHH
Confidence 345666777764332 22222 2221 1112233445555444 5678999999 56788999999999999
Q ss_pred HHHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHhHhCCCEEEEEecCCChHHHhhhcceEEecCCcEEEEcCcchHHH
Q 000979 84 EMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLE 162 (1202)
Q Consensus 84 raLv~~P~ILlLDEpTSGLDs~sa~~vv~~L~~~a~~~~tTiIiaihQp~~s~~~~fD~IvvL~~G~vvy~G~~~el~~ 162 (1202)
||++++|+||+||||||+||+.++..+++.|++. +++|+|++| ||+++.+.+|+|++|++|++++.|+|+++++
T Consensus 624 Rall~~p~iliLDE~Ts~LD~~te~~i~~~L~~~--~~~T~Iiit---Hr~~~~~~~D~i~~l~~G~i~~~G~~~~L~~ 697 (708)
T TIGR01193 624 RALLTDSKVLILDESTSNLDTITEKKIVNNLLNL--QDKTIIFVA---HRLSVAKQSDKIIVLDHGKIIEQGSHDELLD 697 (708)
T ss_pred HHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHh--cCCEEEEEe---cchHHHHcCCEEEEEECCEEEEECCHHHHHh
Confidence 9999999999999999999999999999999874 355666777 7888999999999999999999999999985
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc. |
| >PRK11176 lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.2e-20 Score=235.52 Aligned_cols=141 Identities=23% Similarity=0.285 Sum_probs=110.2
Q ss_pred HHHhcCCCCCCCH--HHHHHH-hhhh--hhhhhHHHHHHHHHhC-------CcccccccccCCcccccCccccchhhHHH
Q 000979 17 REKAAGIKPDPDI--DVYMKA-IATE--GQEANVITDYYLKVLG-------LDVCADTMVGDEMIRGISGGQKKRVTTGE 84 (1202)
Q Consensus 17 ~~~~~~~~~~~~~--~~~~~~-~~~~--~~~~~~~v~~il~~lg-------L~~~~dT~VG~~~~~gLSGGQKqRvsIAr 84 (1202)
.++..+..||+.. +.+.++ +... +...++.+++.++..| |++..||.|| +.++.||||||||++|||
T Consensus 415 ~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~al~~~~l~~~i~~lp~Gldt~ig-~~g~~LSGGqrQRi~LAR 493 (582)
T PRK11176 415 LRNQVALVSQNVHLFNDTIANNIAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIG-ENGVLLSGGQRQRIAIAR 493 (582)
T ss_pred HHhhceEEccCceeecchHHHHHhcCCCCCCCHHHHHHHHHHhCcHHHHHhcccccCceeC-CCCCcCCHHHHHHHHHHH
Confidence 3455666776432 222222 3321 1123344555666655 6778899999 567889999999999999
Q ss_pred HHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHhHhCCCEEEEEecCCChHHHhhhcceEEecCCcEEEEcCcchHHH
Q 000979 85 MMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLE 162 (1202)
Q Consensus 85 aLv~~P~ILlLDEpTSGLDs~sa~~vv~~L~~~a~~~~tTiIiaihQp~~s~~~~fD~IvvL~~G~vvy~G~~~el~~ 162 (1202)
||+++|+||+|||||||||+.++..+.+.|++.. .++|.|++| |++++.+.||+|++|++|+++++|+|+++++
T Consensus 494 all~~~~ililDEptsaLD~~t~~~i~~~l~~~~-~~~tvI~Vt---Hr~~~~~~~D~Ii~l~~g~i~e~g~~~~l~~ 567 (582)
T PRK11176 494 ALLRDSPILILDEATSALDTESERAIQAALDELQ-KNRTSLVIA---HRLSTIEKADEILVVEDGEIVERGTHAELLA 567 (582)
T ss_pred HHHhCCCEEEEECccccCCHHHHHHHHHHHHHHh-CCCEEEEEe---cchHHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 9999999999999999999999999999998864 355666677 7779999999999999999999999999985
|
|
| >COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.2e-20 Score=202.06 Aligned_cols=115 Identities=32% Similarity=0.430 Sum_probs=106.4
Q ss_pred hhhhHHHHHHHHHhCCcccccccccCCcccccCccccchhhHHHHHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHhHh
Q 000979 41 QEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHI 120 (1202)
Q Consensus 41 ~~~~~~v~~il~~lgL~~~~dT~VG~~~~~gLSGGQKqRvsIAraLv~~P~ILlLDEpTSGLDs~sa~~vv~~L~~~a~~ 120 (1202)
++..+.|+..|+.+|+.+-++-.+. .||||||||+-|||||+.+|+||+||||||.||-....+|++.+++++++
T Consensus 113 ~~D~~~v~~aL~~~~~~~la~r~~~-----~LSGGerQrv~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~ 187 (258)
T COG1120 113 KEDEEIVEEALELLGLEHLADRPVD-----ELSGGERQRVLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNRE 187 (258)
T ss_pred HhHHHHHHHHHHHhCcHHHhcCccc-----ccChhHHHHHHHHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHh
Confidence 4445578999999999999999885 69999999999999999999999999999999999999999999999988
Q ss_pred CCCEEEEEecCCChHHHhhhcceEEecCCcEEEEcCcchHH
Q 000979 121 NSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVL 161 (1202)
Q Consensus 121 ~~tTiIiaihQp~~s~~~~fD~IvvL~~G~vvy~G~~~el~ 161 (1202)
++.|||+++|-+. -..+.+|++++|.+|+++.+|+++|++
T Consensus 188 ~~~tvv~vlHDlN-~A~ryad~~i~lk~G~i~a~G~p~evl 227 (258)
T COG1120 188 KGLTVVMVLHDLN-LAARYADHLILLKDGKIVAQGTPEEVL 227 (258)
T ss_pred cCCEEEEEecCHH-HHHHhCCEEEEEECCeEEeecCcchhc
Confidence 8999999988665 688999999999999999999998876
|
|
| >TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Probab=99.83 E-value=9.9e-21 Score=239.71 Aligned_cols=111 Identities=25% Similarity=0.317 Sum_probs=94.1
Q ss_pred HHHHHHHHHhC-------CcccccccccCCcccccCccccchhhHHHHHhcCCeEeeeeCCCccccHHHHHHHHHHHHHH
Q 000979 45 VITDYYLKVLG-------LDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQN 117 (1202)
Q Consensus 45 ~~v~~il~~lg-------L~~~~dT~VG~~~~~gLSGGQKqRvsIAraLv~~P~ILlLDEpTSGLDs~sa~~vv~~L~~~ 117 (1202)
+.+.+.++..| |++..||.+| +++.+||||||||++|||||+++|+||+||||||+||+.++..+.+ ...
T Consensus 585 e~i~~al~~a~l~~~i~~lp~GldT~ig-e~G~~LSGGQkQRlalARALl~~p~ILILDEpTSaLD~~te~~i~~-~~~- 661 (711)
T TIGR00958 585 EEIMAAAKAANAHDFIMEFPNGYDTEVG-EKGSQLSGGQKQRIAIARALVRKPRVLILDEATSALDAECEQLLQE-SRS- 661 (711)
T ss_pred HHHHHHHHHcCCHHHHHhCCCccCCccc-CCCCcCCHHHHHHHHHHHHHhcCCCEEEEEccccccCHHHHHHHHH-hhc-
Confidence 34555666555 5668999999 6678899999999999999999999999999999999999988888 322
Q ss_pred hHhCCCEEEEEecCCChHHHhhhcceEEecCCcEEEEcCcchHHH
Q 000979 118 IHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLE 162 (1202)
Q Consensus 118 a~~~~tTiIiaihQp~~s~~~~fD~IvvL~~G~vvy~G~~~el~~ 162 (1202)
.+++|.|+|| ||.++.+.+|+|++|++|+++++|+|+|+++
T Consensus 662 -~~~~TvIiIt---Hrl~~i~~aD~IivL~~G~ive~Gt~~eL~~ 702 (711)
T TIGR00958 662 -RASRTVLLIA---HRLSTVERADQILVLKKGSVVEMGTHKQLME 702 (711)
T ss_pred -cCCCeEEEEe---ccHHHHHhCCEEEEEECCEEEEeeCHHHHHh
Confidence 2345566667 7778999999999999999999999999985
|
|
| >cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.4e-20 Score=207.58 Aligned_cols=179 Identities=16% Similarity=0.185 Sum_probs=115.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCcc-------C-Cc--ccccceEEEeecCCCCC-CCCCHHHHHHH
Q 000979 644 LTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP-------K-KQ--ETFARISGYCEQNDIHS-PFVTIYESLLF 712 (1202)
Q Consensus 644 ~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~-------~-~~--~~~~~~~~~v~q~~~~~-~~lTv~e~l~~ 712 (1202)
+++|+|||||||||||++|++...+ ..|.+..++.. . .. ....-.+.|..|++... -..++++...
T Consensus 24 ~~~i~G~NGsGKStll~ai~~~l~~--~~~~~r~~~~~~~i~~~~~~~~~~~~~~v~~~f~~~~~~~~~~~~~~~~~~~- 100 (247)
T cd03275 24 FTCIIGPNGSGKSNLMDAISFVLGE--KSSHLRSKNLKDLIYRARVGKPDSNSAYVTAVYEDDDGEEKTFRRIITGGSS- 100 (247)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCC--CcccccccchhhhcccCccccCCCceEEEEEEEEcCCCcEEEEEEEEECCce-
Confidence 9999999999999999999985431 12333322210 0 00 01111233443432210 0011111100
Q ss_pred HHHccCCC-CCCHHHHHHHHHHHHHHcCCCcccccc----------cc-C------CCCCCCCHHHHHHHHHHHHHhhC-
Q 000979 713 SAWLRLSP-EVDSETRKMFIDEVMELVELNPLRQSL----------VG-L------PGVSGLSTEQRKRLTIAVELVAN- 773 (1202)
Q Consensus 713 ~~~~~~~~-~~~~~~~~~~~~~~l~~l~l~~~~~~~----------~~-~------~~~~~LSgGqrqRv~ia~aL~~~- 773 (1202)
..+.+. ..+ ++.++++++.+|+....... .. . ..+..||||||||++||++++.+
T Consensus 101 --~~~ingk~~s----~~~~~~~l~~~gi~~~~~~~~i~Qg~v~~i~~~~p~~~~~~~~~~LS~G~k~rl~la~al~~~~ 174 (247)
T cd03275 101 --SYRINGKVVS----LKEYNEELEKINILVKARNFLVFQGDVESIASKNPPGKRFRDMDNLSGGEKTMAALALLFAIHS 174 (247)
T ss_pred --EEEECCEEec----HHHHHHHHHHhCCCCCCCeEEEECCchhhhhhccCcchhhhhHHHcCHHHHHHHHHHHHHHHhc
Confidence 011111 111 22356888888885321110 00 0 11357999999999999999875
Q ss_pred ---CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCC
Q 000979 774 ---PSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGG 833 (1202)
Q Consensus 774 ---p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG 833 (1202)
|++++|||||+|||+..+..+.+.|++++++|.++|++||++ ++.+.+|++++|.+.+
T Consensus 175 ~~~p~~lllDEPt~~LD~~~~~~l~~~i~~~~~~g~~vi~isH~~--~~~~~~d~i~~~~~~~ 235 (247)
T cd03275 175 YQPAPFFVLDEVDAALDNTNVGKVASYIREQAGPNFQFIVISLKE--EFFSKADALVGVYRDQ 235 (247)
T ss_pred cCCCCEEEEecccccCCHHHHHHHHHHHHHhccCCcEEEEEECCH--HHHhhCCeEEEEEecC
Confidence 899999999999999999999999999977799999999995 5678999999998764
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for |
| >KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.8e-20 Score=202.47 Aligned_cols=201 Identities=19% Similarity=0.292 Sum_probs=152.9
Q ss_pred CCceeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcC
Q 000979 600 EPHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISG 679 (1202)
Q Consensus 600 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g 679 (1202)
.|..+-++||+|.|+ +.++++++++|-|.--.-+||+||||.||||||++|.|...+ ..|+..-
T Consensus 583 ~PPvLGlH~VtFgy~------------gqkpLFkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~P--~~GE~RK-- 646 (807)
T KOG0066|consen 583 NPPVLGLHDVTFGYP------------GQKPLFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLDP--NDGELRK-- 646 (807)
T ss_pred CCCeeecccccccCC------------CCCchhhcccccccccceeEEECCCCccHHHHHHHHhcCCCC--Ccchhhc--
Confidence 445577888888875 456789999999999999999999999999999999998773 3565432
Q ss_pred ccCCcccccceEEEeecCC--CCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCC
Q 000979 680 YPKKQETFARISGYCEQND--IHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLS 757 (1202)
Q Consensus 680 ~~~~~~~~~~~~~~v~q~~--~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LS 757 (1202)
..+-.+|+..|.. .+-..-|..|.|.-.. ..+.+ .....+-.+||...++++- +..||
T Consensus 647 ------nhrL~iG~FdQh~~E~L~~Eetp~EyLqr~F------Nlpyq----~ARK~LG~fGL~sHAHTik----ikdLS 706 (807)
T KOG0066|consen 647 ------NHRLRIGWFDQHANEALNGEETPVEYLQRKF------NLPYQ----EARKQLGTFGLASHAHTIK----IKDLS 706 (807)
T ss_pred ------cceeeeechhhhhHHhhccccCHHHHHHHhc------CCChH----HHHHHhhhhhhhhccceEe----eeecC
Confidence 2344678887763 2333456666654221 11222 1346778899998888873 56899
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCCEEEE
Q 000979 758 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIY 837 (1202)
Q Consensus 758 gGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~ 837 (1202)
||||-||++|.--+..|+||+|||||++||.++...+-+.|++. .-.||+++||-+. +.+--+.+.++.+.|---.
T Consensus 707 GGQKaRValaeLal~~PDvlILDEPTNNLDIESIDALaEAIney---~GgVi~VsHDeRL-i~eT~C~LwVvE~Q~i~eI 782 (807)
T KOG0066|consen 707 GGQKARVALAELALGGPDVLILDEPTNNLDIESIDALAEAINEY---NGGVIMVSHDERL-IVETDCNLWVVENQGIDEI 782 (807)
T ss_pred CcchHHHHHHHHhcCCCCEEEecCCCCCcchhhHHHHHHHHHhc---cCcEEEEecccce-eeecCceEEEEccCChhhc
Confidence 99999999999999999999999999999999999999999875 3479999999774 5566677888876654334
Q ss_pred EcC
Q 000979 838 VGP 840 (1202)
Q Consensus 838 ~G~ 840 (1202)
.|+
T Consensus 783 dGd 785 (807)
T KOG0066|consen 783 DGD 785 (807)
T ss_pred ccc
Confidence 454
|
|
| >COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.9e-20 Score=192.19 Aligned_cols=116 Identities=24% Similarity=0.316 Sum_probs=105.1
Q ss_pred hhhhHHHHHHHHHhCCcccccccccCCcccccCccccchhhHHHHHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHhHh
Q 000979 41 QEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHI 120 (1202)
Q Consensus 41 ~~~~~~v~~il~~lgL~~~~dT~VG~~~~~gLSGGQKqRvsIAraLv~~P~ILlLDEpTSGLDs~sa~~vv~~L~~~a~~ 120 (1202)
++.+...=..|+.+|+.+.+-+..+ .|||||+|||+|||||+.+|+|++-||||++||+.++.+||+.|+++..+
T Consensus 122 k~dk~~Al~aLervgi~~~A~qra~-----~LSGGQQQRVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~ 196 (258)
T COG3638 122 KEDKAQALDALERVGILDKAYQRAS-----TLSGGQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQE 196 (258)
T ss_pred HHHHHHHHHHHHHcCcHHHHHHHhc-----cCCcchhHHHHHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHH
Confidence 3444444558999999999999986 79999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEEEecCCChHHHhhhcceEEecCCcEEEEcCcchHHH
Q 000979 121 NSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLE 162 (1202)
Q Consensus 121 ~~tTiIiaihQp~~s~~~~fD~IvvL~~G~vvy~G~~~el~~ 162 (1202)
.|.|+|+.+||-- -.-+.||||+=|.+|++||.||.+|+-+
T Consensus 197 ~g~Tvi~nLH~vd-lA~~Y~~Riigl~~G~ivfDg~~~el~~ 237 (258)
T COG3638 197 DGITVIVNLHQVD-LAKKYADRIIGLKAGRIVFDGPASELTD 237 (258)
T ss_pred cCCEEEEEechHH-HHHHHHhhheEecCCcEEEeCChhhhhH
Confidence 9999999999654 5678999999999999999999998765
|
|
| >COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.2e-20 Score=214.12 Aligned_cols=114 Identities=25% Similarity=0.361 Sum_probs=97.8
Q ss_pred hHHHHHHHHHhCCc-------ccccccccCCcccccCccccchhhHHHHHhcCCeEeeeeCCCccccHHHHHHHHHHHHH
Q 000979 44 NVITDYYLKVLGLD-------VCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQ 116 (1202)
Q Consensus 44 ~~~v~~il~~lgL~-------~~~dT~VG~~~~~gLSGGQKqRvsIAraLv~~P~ILlLDEpTSGLDs~sa~~vv~~L~~ 116 (1202)
++.+-++++..||+ +..||.+| ++|++||||||||++|||+|++|.++++|||||.|||+.+|.+|++.+.+
T Consensus 441 DEel~~aL~qvgL~~l~~~~p~gl~t~lg-e~G~~LSGGE~rRLAlAR~LL~dapl~lLDEPTegLD~~TE~~vL~ll~~ 519 (573)
T COG4987 441 DEELWAALQQVGLEKLLESAPDGLNTWLG-EGGRRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLALLFE 519 (573)
T ss_pred HHHHHHHHHHcCHHHHHHhChhhhhchhc-cCCCcCCchHHHHHHHHHHHHcCCCeEEecCCcccCChhhHHHHHHHHHH
Confidence 34455567766664 47889999 77899999999999999999999999999999999999999999999988
Q ss_pred HhHhCCCEEEEEecCCChHHHhhhcceEEecCCcEEEEcCcchHHH
Q 000979 117 NIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLE 162 (1202)
Q Consensus 117 ~a~~~~tTiIiaihQp~~s~~~~fD~IvvL~~G~vvy~G~~~el~~ 162 (1202)
.+. ++|-+++| |++.-.+.||+|+||++|+++++|+|.++++
T Consensus 520 ~~~-~kTll~vT---HrL~~le~~drIivl~~Gkiie~G~~~~Ll~ 561 (573)
T COG4987 520 HAE-GKTLLMVT---HRLRGLERMDRIIVLDNGKIIEEGTHAELLA 561 (573)
T ss_pred Hhc-CCeEEEEe---cccccHhhcCEEEEEECCeeeecCCHHhhhc
Confidence 663 44444455 6777889999999999999999999999985
|
|
| >PRK13537 nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.4e-20 Score=213.63 Aligned_cols=116 Identities=26% Similarity=0.382 Sum_probs=104.6
Q ss_pred hhhhhHHHHHHHHHhCCcccccccccCCcccccCccccchhhHHHHHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHhH
Q 000979 40 GQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIH 119 (1202)
Q Consensus 40 ~~~~~~~v~~il~~lgL~~~~dT~VG~~~~~gLSGGQKqRvsIAraLv~~P~ILlLDEpTSGLDs~sa~~vv~~L~~~a~ 119 (1202)
.++.++.++.+++.+||.+.+|+.++ +||||||||++||+||+.+|++|+|||||+|||+.+...+++.+++++.
T Consensus 112 ~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qrl~la~aL~~~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~ 186 (306)
T PRK13537 112 AAAARALVPPLLEFAKLENKADAKVG-----ELSGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLA 186 (306)
T ss_pred HHHHHHHHHHHHHHcCCchHhcCchh-----hCCHHHHHHHHHHHHHhCCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHh
Confidence 34455678899999999999999985 7999999999999999999999999999999999999999999999764
Q ss_pred hCCCEEEEEecCCChHHHhhhcceEEecCCcEEEEcCcchHHH
Q 000979 120 INSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLE 162 (1202)
Q Consensus 120 ~~~tTiIiaihQp~~s~~~~fD~IvvL~~G~vvy~G~~~el~~ 162 (1202)
.++||+++.|+.. ++.+.+|+|++|++|++++.|+.+++..
T Consensus 187 -~g~till~sH~l~-e~~~~~d~i~il~~G~i~~~g~~~~l~~ 227 (306)
T PRK13537 187 -RGKTILLTTHFME-EAERLCDRLCVIEEGRKIAEGAPHALIE 227 (306)
T ss_pred -CCCEEEEECCCHH-HHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 5889999877555 8889999999999999999999999864
|
|
| >COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.5e-20 Score=192.99 Aligned_cols=112 Identities=26% Similarity=0.299 Sum_probs=96.4
Q ss_pred HHHHHHHHhCCcccccccccCCcccccCccccchhhHHHHHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHhHhCCCEE
Q 000979 46 ITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTA 125 (1202)
Q Consensus 46 ~v~~il~~lgL~~~~dT~VG~~~~~gLSGGQKqRvsIAraLv~~P~ILlLDEpTSGLDs~sa~~vv~~L~~~a~~~~tTi 125 (1202)
++.++++.+||++..-.. ...+|||||||||||||||+.+|++|+||||||+||+....+|++.|.++.+..+.|.
T Consensus 120 ~i~~~L~~VgL~~~~l~R----~P~eLSGGQ~QRiaIARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~ 195 (252)
T COG1124 120 RIAELLDQVGLPPSFLDR----RPHELSGGQRQRIAIARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTY 195 (252)
T ss_pred HHHHHHHHcCCCHHHHhc----CchhcChhHHHHHHHHHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceE
Confidence 378899999999866553 3468999999999999999999999999999999999999999999999876555555
Q ss_pred EEEecCCChHHHhhhcceEEecCCcEEEEcCcchHHH
Q 000979 126 VISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLE 162 (1202)
Q Consensus 126 IiaihQp~~s~~~~fD~IvvL~~G~vvy~G~~~el~~ 162 (1202)
++. .|-..-+..++|||+||++|+++|.++..++.+
T Consensus 196 l~I-sHdl~~v~~~cdRi~Vm~~G~ivE~~~~~~l~~ 231 (252)
T COG1124 196 LFI-SHDLALVEHMCDRIAVMDNGQIVEIGPTEELLS 231 (252)
T ss_pred EEE-eCcHHHHHHHhhheeeeeCCeEEEeechhhhhc
Confidence 554 335556778899999999999999999999875
|
|
| >KOG2355 consensus Predicted ABC-type transport, ATPase component/CCR4 associated factor [General function prediction only; Transcription] | Back alignment and domain information |
|---|
Probab=99.81 E-value=3e-19 Score=177.53 Aligned_cols=206 Identities=19% Similarity=0.319 Sum_probs=151.5
Q ss_pred ceeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCcc
Q 000979 602 HSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP 681 (1202)
Q Consensus 602 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 681 (1202)
..++..++.|+|+.. .+++-|+|++++.|.-+.++|.||||||||||+|+|..--+ .|.|.++|.+
T Consensus 12 ~aievsgl~f~y~~~------------dP~~~Dfnldlp~gsRcLlVGaNGaGKtTlLKiLsGKhmv~--~~~v~Vlgrs 77 (291)
T KOG2355|consen 12 FAIEVSGLQFKYKVS------------DPIFFDFNLDLPAGSRCLLVGANGAGKTTLLKILSGKHMVG--GGVVQVLGRS 77 (291)
T ss_pred ceEEEeccEEecccC------------CceEEEEeeccCCCceEEEEecCCCchhhhHHHhcCccccc--CCeEEEcCcC
Confidence 458889999998642 36899999999999999999999999999999999965422 3778888865
Q ss_pred CCc--------------ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCcccccc
Q 000979 682 KKQ--------------ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSL 747 (1202)
Q Consensus 682 ~~~--------------~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~ 747 (1202)
.-. ..|.+..+.-- +-.+....++ |.+.|+.. ..+. +| -+++++.+++.-...
T Consensus 78 aFhDt~l~~Sgdl~YLGgeW~~~~~~ag-evplq~D~sa-e~mifgV~-----g~dp-~R---re~LI~iLDIdl~WR-- 144 (291)
T KOG2355|consen 78 AFHDTSLESSGDLSYLGGEWSKTVGIAG-EVPLQGDISA-EHMIFGVG-----GDDP-ER---REKLIDILDIDLRWR-- 144 (291)
T ss_pred ccccccccccCceeEecccccccccccc-cccccccccH-HHHHhhcc-----CCCh-hH---hhhhhhheeccceEE--
Confidence 311 11222222222 2222334555 44445421 2222 33 356777777643221
Q ss_pred ccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhcceE
Q 000979 748 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDEL 826 (1202)
Q Consensus 748 ~~~~~~~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v 826 (1202)
.+.+|-||||||.|++.|++.=++|+|||-|--||..++..+++.+++-.++ |.||+..||-.+ -+..-..++
T Consensus 145 -----mHkvSDGqrRRVQicMGLL~PfkVLLLDEVTVDLDVlARadLLeFlkeEce~RgatIVYATHIFD-GLe~Wpthl 218 (291)
T KOG2355|consen 145 -----MHKVSDGQRRRVQICMGLLKPFKVLLLDEVTVDLDVLARADLLEFLKEECEQRGATIVYATHIFD-GLETWPTHL 218 (291)
T ss_pred -----EeeccccchhhhHHHHhcccceeEEEeeeeEeehHHHHHHHHHHHHHHHHhhcCcEEEEEeeecc-chhhcchhE
Confidence 2469999999999999999999999999999999999999999999987754 899999999776 466778999
Q ss_pred EEEecCCEEEEEcCC
Q 000979 827 FLMKRGGQEIYVGPL 841 (1202)
Q Consensus 827 ~~l~~gG~~~~~G~~ 841 (1202)
+.++ +|+++-.-+.
T Consensus 219 ~yi~-~Gkl~~~l~~ 232 (291)
T KOG2355|consen 219 VYIK-SGKLVDNLKY 232 (291)
T ss_pred EEec-CCeeeecccc
Confidence 9998 5888775443
|
|
| >COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=99.81 E-value=6.1e-20 Score=188.90 Aligned_cols=144 Identities=22% Similarity=0.284 Sum_probs=121.1
Q ss_pred HHHHHHHhcCCCCCC-----------CHHHHHHH-hhhhhhhhhHHHHHHHHHhCCccc-ccccccCCcccccCccccch
Q 000979 13 ELARREKAAGIKPDP-----------DIDVYMKA-IATEGQEANVITDYYLKVLGLDVC-ADTMVGDEMIRGISGGQKKR 79 (1202)
Q Consensus 13 ~~~~~~~~~~~~~~~-----------~~~~~~~~-~~~~~~~~~~~v~~il~~lgL~~~-~dT~VG~~~~~gLSGGQKqR 79 (1202)
++-+.++..|++.|+ |+..-+++ ....+++.++++-.-|+..||... +|-+ ...||||.|||
T Consensus 79 ~~~~ir~r~GvlFQ~gALFssltV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~-----PsELSGGM~KR 153 (263)
T COG1127 79 ELYEIRKRMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADLY-----PSELSGGMRKR 153 (263)
T ss_pred HHHHHHhheeEEeeccccccccchhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhhhhhC-----chhhcchHHHH
Confidence 555667888988884 44454545 455667778888888999999986 4443 46899999999
Q ss_pred hhHHHHHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHhHhCCCEEEEEecCCChHHHhhhcceEEecCCcEEEEcCcch
Q 000979 80 VTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPREL 159 (1202)
Q Consensus 80 vsIAraLv~~P~ILlLDEpTSGLDs~sa~~vv~~L~~~a~~~~tTiIiaihQp~~s~~~~fD~IvvL~~G~vvy~G~~~e 159 (1202)
+|+||||..||.|+|+||||||||+.++..+.+.++++.+.-+.|+++.+| .-.+++..+|++++|.+|+|+.+||.++
T Consensus 154 vaLARAialdPell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTH-Dl~s~~~i~Drv~~L~~gkv~~~Gt~~e 232 (263)
T COG1127 154 VALARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTH-DLDSLLTIADRVAVLADGKVIAEGTPEE 232 (263)
T ss_pred HHHHHHHhcCCCEEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEEC-ChHHHHhhhceEEEEeCCEEEEeCCHHH
Confidence 999999999999999999999999999999999999887777778777656 6679999999999999999999999999
Q ss_pred HHH
Q 000979 160 VLE 162 (1202)
Q Consensus 160 l~~ 162 (1202)
+.+
T Consensus 233 l~~ 235 (263)
T COG1127 233 LLA 235 (263)
T ss_pred HHh
Confidence 974
|
|
| >COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.81 E-value=3.4e-20 Score=194.66 Aligned_cols=108 Identities=26% Similarity=0.350 Sum_probs=93.0
Q ss_pred hhhhhhhhHHHHHHHHHhCCccccc-ccccCCcccccCccccchhhHHHHHhcCCeEeeeeCCCccccHHHHHHHHHHHH
Q 000979 37 ATEGQEANVITDYYLKVLGLDVCAD-TMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLR 115 (1202)
Q Consensus 37 ~~~~~~~~~~v~~il~~lgL~~~~d-T~VG~~~~~gLSGGQKqRvsIAraLv~~P~ILlLDEpTSGLDs~sa~~vv~~L~ 115 (1202)
.....++++.++.+++.+||.+..+ ... .+|||||||||||||||+.+|+|++.||||.+||+.++..|++.++
T Consensus 112 ~~~~~~~~~~~~~l~~~lgl~~~~~~~~p-----~eLSGGqqQRVAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~ 186 (226)
T COG1136 112 GKSAGRRKRAAEELLEVLGLEDRLLKKKP-----SELSGGQQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLELLR 186 (226)
T ss_pred CCChhHHHHHHHHHHHhcCChhhhccCCc-----hhcCHHHHHHHHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHH
Confidence 3333356777889999999997777 665 4899999999999999999999999999999999999999999999
Q ss_pred HHhHhCCCEEEEEecCCChHHHhhhcceEEecCCcE
Q 000979 116 QNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQI 151 (1202)
Q Consensus 116 ~~a~~~~tTiIiaihQp~~s~~~~fD~IvvL~~G~v 151 (1202)
+++++.++|+|+.+| .+.+-..+||++.|.+|++
T Consensus 187 ~~~~~~g~tii~VTH--d~~lA~~~dr~i~l~dG~~ 220 (226)
T COG1136 187 ELNKERGKTIIMVTH--DPELAKYADRVIELKDGKI 220 (226)
T ss_pred HHHHhcCCEEEEEcC--CHHHHHhCCEEEEEeCCee
Confidence 998877877776655 5567789999999999993
|
|
| >TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Probab=99.81 E-value=5.2e-20 Score=209.29 Aligned_cols=115 Identities=28% Similarity=0.394 Sum_probs=103.2
Q ss_pred hhhhHHHHHHHHHhCCcccccccccCCcccccCccccchhhHHHHHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHhHh
Q 000979 41 QEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHI 120 (1202)
Q Consensus 41 ~~~~~~v~~il~~lgL~~~~dT~VG~~~~~gLSGGQKqRvsIAraLv~~P~ILlLDEpTSGLDs~sa~~vv~~L~~~a~~ 120 (1202)
.+.++.++++++.+||.+..|+.++ .||||||||++||+||+.+|++|+|||||+|||+.+...+++.++++++
T Consensus 99 ~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~- 172 (302)
T TIGR01188 99 DEAEERAEELLELFELGEAADRPVG-----TYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDYIRALKE- 172 (302)
T ss_pred HHHHHHHHHHHHHcCChhHhCCchh-----hCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHh-
Confidence 3445668899999999999998875 7999999999999999999999999999999999999999999999764
Q ss_pred CCCEEEEEecCCChHHHhhhcceEEecCCcEEEEcCcchHHH
Q 000979 121 NSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLE 162 (1202)
Q Consensus 121 ~~tTiIiaihQp~~s~~~~fD~IvvL~~G~vvy~G~~~el~~ 162 (1202)
.++||+++.|++ .++.+.+|+|++|++|++++.|+++++.+
T Consensus 173 ~g~tvi~~sH~~-~~~~~~~d~v~~l~~G~i~~~g~~~~l~~ 213 (302)
T TIGR01188 173 EGVTILLTTHYM-EEADKLCDRIAIIDHGRIIAEGTPEELKR 213 (302)
T ss_pred CCCEEEEECCCH-HHHHHhCCEEEEEECCEEEEECCHHHHHH
Confidence 578888887754 47888999999999999999999998875
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc. |
| >COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.81 E-value=7.8e-20 Score=178.90 Aligned_cols=115 Identities=23% Similarity=0.341 Sum_probs=105.1
Q ss_pred hhhHHHHHHHHHhCCcccccccccCCcccccCccccchhhHHHHHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHhHhC
Q 000979 42 EANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHIN 121 (1202)
Q Consensus 42 ~~~~~v~~il~~lgL~~~~dT~VG~~~~~gLSGGQKqRvsIAraLv~~P~ILlLDEpTSGLDs~sa~~vv~~L~~~a~~~ 121 (1202)
+.++.|+.++...||..+.+-+=| +||||||||||+||.|+++-+||+||||-|+||+.-+.+....+.++..++
T Consensus 105 ~~r~~v~~aa~~vGl~~~~~RLP~-----~LSGGqRQRvALARclvR~~PilLLDEPFsALdP~LR~eMl~Lv~~l~~E~ 179 (231)
T COG3840 105 EQREKVEAAAAQVGLAGFLKRLPG-----ELSGGQRQRVALARCLVREQPILLLDEPFSALDPALRAEMLALVSQLCDER 179 (231)
T ss_pred HHHHHHHHHHHHhChhhHhhhCcc-----ccCchHHHHHHHHHHHhccCCeEEecCchhhcCHHHHHHHHHHHHHHHHhh
Confidence 444558889999999998887754 799999999999999999999999999999999999999999999999889
Q ss_pred CCEEEEEecCCChHHHhhhcceEEecCCcEEEEcCcchHHH
Q 000979 122 SGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLE 162 (1202)
Q Consensus 122 ~tTiIiaihQp~~s~~~~fD~IvvL~~G~vvy~G~~~el~~ 162 (1202)
+.|+++.+|||. +.-+.+|+++++++|+|+++|+.++...
T Consensus 180 ~~TllmVTH~~~-Da~~ia~~~~fl~~Gri~~~g~~~~~~~ 219 (231)
T COG3840 180 KMTLLMVTHHPE-DAARIADRVVFLDNGRIAAQGSTQELLS 219 (231)
T ss_pred CCEEEEEeCCHH-HHHHhhhceEEEeCCEEEeeccHHHHhc
Confidence 999999999887 8899999999999999999999888763
|
|
| >PF01061 ABC2_membrane: ABC-2 type transporter; InterPro: IPR013525 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems | Back alignment and domain information |
|---|
Probab=99.80 E-value=7.5e-21 Score=205.19 Aligned_cols=209 Identities=27% Similarity=0.514 Sum_probs=185.3
Q ss_pred HHHHHHHHHHHHHhhcChhhH-HHHHHHHHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHHHHHHHHHHHhhhhhhhHH
Q 000979 929 IQFVACLWKQHWSYWRNPPYT-AVRFFFTAFIALLFGSLFWDLGGRTKRNQDLFNAMGSMFTAVLFLGVQYCSSVQPIVS 1007 (1202)
Q Consensus 929 ~q~~~l~~R~~~~~~R~~~~~-~~~~~~~~~~~l~~g~~f~~~~~~~~~~~~~~~~~g~lf~~~~~~~~~~~~~~~~~~~ 1007 (1202)
+|++.+++|+++..+|||... ..+++..++.++++|.+|.++++ +.++. ++.|.+++.+.+..+...........
T Consensus 1 ~q~~~l~~r~~~~~~r~~~~~~~~~~~~pl~~~~~~~~~~~~~~~---~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (210)
T PF01061_consen 1 RQIWALLRREFKRFWRNPFLGLIWSLIFPLLLLLIFGFIFGKLGN---SQDGF-NRPGLIFGSIIFSFFSSISGSSISFE 76 (210)
T ss_pred CHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHHHHHHHHhcccc---ccccc-ccceeeehhhHHhhhhhcccchhhhh
Confidence 599999999999999999888 89999999999999999999873 22233 56777777766666555555445567
Q ss_pred HhhHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000979 1008 VERTVFYREKAAGMYAGIPWALAQVMIEIPYILVQSVVYGAIVYAMIGFEWTAAKFFWYIFFMYFTLLFFTFYGMMAVAL 1087 (1202)
Q Consensus 1008 ~er~v~~rE~~~~~Y~~~~y~~a~~~~~~p~~~~~~~~~~~i~Y~~~gl~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~ 1087 (1202)
.||..+.||+.++.|++.+|.+|+.+.+++..++.++++.++.|++.|++.+ +++.+++++++..+++.++|.+++++
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~g~~~~~~ 154 (210)
T PF01061_consen 77 RERGTLERERASPLYSPFAYLLAKVLSAFLISLIISLIVLIIAYLLFGLDFE--SFFLFLLILLLSILCSSGLGLLLAAL 154 (210)
T ss_pred hhccccccccccccccchhhheeeccccccccccccchhhhhhhhhhccccc--cchheecccccccccccccccccccc
Confidence 8999999999999999999999999999999999999999999999999877 67777777778888889999999999
Q ss_pred cCCHHHHHHHHHHHHHHHHHhccCCcCCCCcchHhHHhHhhcHHHHHHHHHHHHHh
Q 000979 1088 TPNHHIAAIVSTLFYGLWNVFSGFIIPRPRIPIWWRWYYWANPIAWTLYGLVASQF 1143 (1202)
Q Consensus 1088 ~~~~~~a~~~~~~~~~~~~lf~G~~i~~~~ip~~~~w~~~~sp~~y~~~~l~~nef 1143 (1202)
+++...+..+.+++..+++++||.++|.+++|+|++|+.|+||++|++|++..++|
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~sg~~~p~~~lP~~~~~i~~~~P~~~~~~~~r~~~f 210 (210)
T PF01061_consen 155 FPSFRDASAISSLILLLLFFLSGVFFPLSSLPSWLRWISYLNPLTYAVEALRAALF 210 (210)
T ss_pred hhhhhhhhhhhhhcccccccceeeecchHHChHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 99999999999999999999999999999999999999999999999999998876
|
ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). A number of bacterial transport systems have been found to contain integral membrane components that have similar sequences []: these systems fit the characteristics of ATP-binding cassette transporters []. The proteins form homo- or hetero-oligomeric channels, allowing ATP-mediated transport. Hydropathy analysis of the proteins has revealed the presence of 6 possible transmembrane regions. These proteins belong to family 2 of ABC transporters.; GO: 0016020 membrane |
| >PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=9e-20 Score=210.34 Aligned_cols=118 Identities=22% Similarity=0.257 Sum_probs=105.3
Q ss_pred hhhhhhHHHHHHHHHhCCcccccccccCCcccccCccccchhhHHHHHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHh
Q 000979 39 EGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNI 118 (1202)
Q Consensus 39 ~~~~~~~~v~~il~~lgL~~~~dT~VG~~~~~gLSGGQKqRvsIAraLv~~P~ILlLDEpTSGLDs~sa~~vv~~L~~~a 118 (1202)
.+++.++.++++++.+||.+..|..+ ++|||||||||+|||||+++|+||+|||||||||..+...+.+.|+++.
T Consensus 107 ~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~LSgGq~QRvalARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~ 181 (356)
T PRK11650 107 PKAEIEERVAEAARILELEPLLDRKP-----RELSGGQRQRVAMGRAIVREPAVFLFDEPLSNLDAKLRVQMRLEIQRLH 181 (356)
T ss_pred CHHHHHHHHHHHHHHcCChhHhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHH
Confidence 34556677899999999999888877 4799999999999999999999999999999999999999999999987
Q ss_pred HhCCCEEEEEecCCChHHHhhhcceEEecCCcEEEEcCcchHHH
Q 000979 119 HINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLE 162 (1202)
Q Consensus 119 ~~~~tTiIiaihQp~~s~~~~fD~IvvL~~G~vvy~G~~~el~~ 162 (1202)
++.++|+|+++|++ .++.+++|+|++|++|++++.|+++++.+
T Consensus 182 ~~~g~tii~vTHd~-~ea~~l~D~i~vl~~G~i~~~g~~~~~~~ 224 (356)
T PRK11650 182 RRLKTTSLYVTHDQ-VEAMTLADRVVVMNGGVAEQIGTPVEVYE 224 (356)
T ss_pred HhcCCEEEEEeCCH-HHHHHhCCEEEEEeCCEEEEECCHHHHHh
Confidence 65588888887755 57899999999999999999999988753
|
|
| >TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Probab=99.80 E-value=8.8e-20 Score=231.48 Aligned_cols=103 Identities=30% Similarity=0.399 Sum_probs=91.4
Q ss_pred CCcccccccccCCcccccCccccchhhHHHHHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHhHhCCCEEEEEecCCCh
Q 000979 55 GLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAP 134 (1202)
Q Consensus 55 gL~~~~dT~VG~~~~~gLSGGQKqRvsIAraLv~~P~ILlLDEpTSGLDs~sa~~vv~~L~~~a~~~~tTiIiaihQp~~ 134 (1202)
.|++..||.|| +.++.||||||||++|||||+++|+||+|||||||||+.++..+.+.|++.. .+.|.|++| |+.
T Consensus 578 ~lp~gl~t~i~-~~g~~LSgGq~qri~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~it---H~~ 652 (694)
T TIGR01846 578 ELPQGYNTEVG-EKGANLSGGQRQRIAIARALVGNPRILIFDEATSALDYESEALIMRNMREIC-RGRTVIIIA---HRL 652 (694)
T ss_pred hCcCccCcEec-CCCCCCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHh-CCCEEEEEe---CCh
Confidence 35668999999 5678899999999999999999999999999999999999999999999864 344455555 666
Q ss_pred HHHhhhcceEEecCCcEEEEcCcchHHH
Q 000979 135 ETYDLFDDIILLSDGQIVYQGPRELVLE 162 (1202)
Q Consensus 135 s~~~~fD~IvvL~~G~vvy~G~~~el~~ 162 (1202)
++.+.+|+|++|++|+++++|+|+++++
T Consensus 653 ~~~~~~d~ii~l~~G~i~~~g~~~~l~~ 680 (694)
T TIGR01846 653 STVRACDRIIVLEKGQIAESGRHEELLA 680 (694)
T ss_pred HHHHhCCEEEEEeCCEEEEeCCHHHHHH
Confidence 8899999999999999999999999985
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.1e-19 Score=209.27 Aligned_cols=117 Identities=21% Similarity=0.261 Sum_probs=105.8
Q ss_pred hhhhhHHHHHHHHHhCCcccccccccCCcccccCccccchhhHHHHHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHhH
Q 000979 40 GQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIH 119 (1202)
Q Consensus 40 ~~~~~~~v~~il~~lgL~~~~dT~VG~~~~~gLSGGQKqRvsIAraLv~~P~ILlLDEpTSGLDs~sa~~vv~~L~~~a~ 119 (1202)
+.+.++.++++++.+||++..|... ++|||||||||+|||||+++|++|+|||||||||..+..++.+.|+++.+
T Consensus 108 ~~~~~~~~~~~l~~l~L~~~~~~~~-----~~LSgGq~QRvaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~ 182 (353)
T TIGR03265 108 RAEVAERVAELLDLVGLPGSERKYP-----GQLSGGQQQRVALARALATSPGLLLLDEPLSALDARVREHLRTEIRQLQR 182 (353)
T ss_pred HHHHHHHHHHHHHHcCCCchhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH
Confidence 4566778999999999999888776 47999999999999999999999999999999999999999999999876
Q ss_pred hCCCEEEEEecCCChHHHhhhcceEEecCCcEEEEcCcchHHH
Q 000979 120 INSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLE 162 (1202)
Q Consensus 120 ~~~tTiIiaihQp~~s~~~~fD~IvvL~~G~vvy~G~~~el~~ 162 (1202)
+.++|+|+++|.+. ++..++|+|++|++|+++++|+++++.+
T Consensus 183 ~~~~tvi~vTHd~~-ea~~l~d~i~vl~~G~i~~~g~~~~~~~ 224 (353)
T TIGR03265 183 RLGVTTIMVTHDQE-EALSMADRIVVMNHGVIEQVGTPQEIYR 224 (353)
T ss_pred hcCCEEEEEcCCHH-HHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 66888888878664 8899999999999999999999988864
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely. |
| >TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.2e-19 Score=209.29 Aligned_cols=118 Identities=17% Similarity=0.216 Sum_probs=104.7
Q ss_pred hhhhhhHHHHHHHHHhCCcccccccccCCcccccCccccchhhHHHHHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHh
Q 000979 39 EGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNI 118 (1202)
Q Consensus 39 ~~~~~~~~v~~il~~lgL~~~~dT~VG~~~~~gLSGGQKqRvsIAraLv~~P~ILlLDEpTSGLDs~sa~~vv~~L~~~a 118 (1202)
.+++.++.++++++.+||++..|..++ +|||||||||+|||||+.+|+||+|||||||||..+..++.+.|+++.
T Consensus 110 ~~~~~~~~v~~~l~~~gL~~~~~~~~~-----~LSgGq~QRvaLARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~ 184 (362)
T TIGR03258 110 PKADIAERVADALKLVGLGDAAAHLPA-----QLSGGMQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEIAALH 184 (362)
T ss_pred CHHHHHHHHHHHHHhcCCCchhhCChh-----hCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHH
Confidence 345566778999999999998888874 799999999999999999999999999999999999999999999987
Q ss_pred HhC-CCEEEEEecCCChHHHhhhcceEEecCCcEEEEcCcchHHH
Q 000979 119 HIN-SGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLE 162 (1202)
Q Consensus 119 ~~~-~tTiIiaihQp~~s~~~~fD~IvvL~~G~vvy~G~~~el~~ 162 (1202)
++. ++|+|+++|.+ .++.+++|+|++|++|+++++|+++++.+
T Consensus 185 ~~~~g~til~vTHd~-~ea~~l~dri~vl~~G~i~~~g~~~~~~~ 228 (362)
T TIGR03258 185 EELPELTILCVTHDQ-DDALTLADKAGIMKDGRLAAHGEPQALYD 228 (362)
T ss_pred HhCCCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 654 67888877754 47899999999999999999999998853
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. |
| >KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.79 E-value=1e-19 Score=204.42 Aligned_cols=199 Identities=24% Similarity=0.280 Sum_probs=133.2
Q ss_pred ceeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCcc
Q 000979 602 HSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP 681 (1202)
Q Consensus 602 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 681 (1202)
..+..++.+.+| +.+.+|++-++++..|.-++|+|+||+|||||||+|+. |.| ++.+
T Consensus 79 ~Di~~~~fdLa~-------------G~k~LL~~a~L~L~~GrRYGLvGrNG~GKsTLLRaia~--------~~v--~~f~ 135 (582)
T KOG0062|consen 79 KDIHIDNFDLAY-------------GGKILLNKANLTLSRGRRYGLVGRNGIGKSTLLRAIAN--------GQV--SGFH 135 (582)
T ss_pred cceeeeeeeeee-------------cchhhhcCCceeeecccccceeCCCCCcHHHHHHHHHh--------cCc--CccC
Confidence 346666666665 45678999999999999999999999999999999985 121 1222
Q ss_pred CCcccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHH-HHHHHHHHHHHHcCCCccccccccCCCCCCCCHHH
Q 000979 682 KKQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSE-TRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQ 760 (1202)
Q Consensus 682 ~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~-~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGq 760 (1202)
..+. .+ ..+++-.......-|.++.+...- +..... ++++..+++|..+|..+-.... ..+.||||-
T Consensus 136 veqE-~~--g~~t~~~~~~l~~D~~~~dfl~~e-----~~l~~~~~l~ei~~~~L~glGFt~emq~~----pt~slSGGW 203 (582)
T KOG0062|consen 136 VEQE-VR--GDDTEALQSVLESDTERLDFLAEE-----KELLAGLTLEEIYDKILAGLGFTPEMQLQ----PTKSLSGGW 203 (582)
T ss_pred chhh-ee--ccchHHHhhhhhccHHHHHHHHhh-----hhhhccchHHHHHHHHHHhCCCCHHHHhc----cccccCcch
Confidence 2110 11 012222111112223333332210 001111 2333344588888887533222 246799999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCCEEE-EEc
Q 000979 761 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEI-YVG 839 (1202)
Q Consensus 761 rqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~-~~G 839 (1202)
|-|+++||||..+|+||||||||+.||..+...+-+.|+.+ +.|+|+++||-+ .+-+.|..|+-+++ -++- |.|
T Consensus 204 rMrlaLARAlf~~pDlLLLDEPTNhLDv~av~WLe~yL~t~---~~T~liVSHDr~-FLn~V~tdIIH~~~-~kL~~YkG 278 (582)
T KOG0062|consen 204 RMRLALARALFAKPDLLLLDEPTNHLDVVAVAWLENYLQTW---KITSLIVSHDRN-FLNTVCTDIIHLEN-LKLDYYKG 278 (582)
T ss_pred hhHHHHHHHHhcCCCEEeecCCcccchhHHHHHHHHHHhhC---CceEEEEeccHH-HHHHHHHHHHHHhh-hhhhhhcC
Confidence 99999999999999999999999999999999999999765 479999999954 46677888888864 3433 445
Q ss_pred C
Q 000979 840 P 840 (1202)
Q Consensus 840 ~ 840 (1202)
.
T Consensus 279 N 279 (582)
T KOG0062|consen 279 N 279 (582)
T ss_pred c
Confidence 4
|
|
| >TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.8e-19 Score=207.07 Aligned_cols=118 Identities=24% Similarity=0.280 Sum_probs=103.9
Q ss_pred hhhhhhHHHHHHHHHhCCcccccccccCCcccccCccccchhhHHHHHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHh
Q 000979 39 EGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNI 118 (1202)
Q Consensus 39 ~~~~~~~~v~~il~~lgL~~~~dT~VG~~~~~gLSGGQKqRvsIAraLv~~P~ILlLDEpTSGLDs~sa~~vv~~L~~~a 118 (1202)
..++.+++++++++.+||++..|...+ .|||||||||+|||||+.+|+||+|||||||||+.++..+++.++++.
T Consensus 102 ~~~~~~~~~~~~l~~vgL~~~~~~~p~-----~LSGGq~QRV~lARAL~~~p~iLLlDEP~saLD~~~r~~l~~~l~~l~ 176 (363)
T TIGR01186 102 PEQERKEKALELLKLVGLEEYEHRYPD-----ELSGGMQQRVGLARALAAEPDILLMDEAFSALDPLIRDSMQDELKKLQ 176 (363)
T ss_pred CHHHHHHHHHHHHHhcCCchhhhCChh-----hCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHH
Confidence 345566778999999999888777764 799999999999999999999999999999999999999999999886
Q ss_pred HhCCCEEEEEecCCChHHHhhhcceEEecCCcEEEEcCcchHHH
Q 000979 119 HINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLE 162 (1202)
Q Consensus 119 ~~~~tTiIiaihQp~~s~~~~fD~IvvL~~G~vvy~G~~~el~~ 162 (1202)
.+.++|||+++|... ++.+.+|+|++|.+|++++.|+++++..
T Consensus 177 ~~~~~Tii~vTHd~~-ea~~~~drI~vl~~G~iv~~g~~~ei~~ 219 (363)
T TIGR01186 177 ATLQKTIVFITHDLD-EAIRIGDRIVIMKAGEIVQVGTPDEILR 219 (363)
T ss_pred HhcCCEEEEEeCCHH-HHHHhCCEEEEEeCCEEEeeCCHHHHHh
Confidence 555788888777544 6889999999999999999999998864
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact |
| >cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.6e-19 Score=198.27 Aligned_cols=115 Identities=27% Similarity=0.302 Sum_probs=100.4
Q ss_pred hhhhHHHHHHHHHhCCcccccccccCCcccccCccccchhhHHHHHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHhHh
Q 000979 41 QEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHI 120 (1202)
Q Consensus 41 ~~~~~~v~~il~~lgL~~~~dT~VG~~~~~gLSGGQKqRvsIAraLv~~P~ILlLDEpTSGLDs~sa~~vv~~L~~~a~~ 120 (1202)
++.++.++++++.+||++..++.++ .||||||||++|||||+.+|+||+|||||+|||..+...+.+.|++++++
T Consensus 111 ~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~ 185 (235)
T cd03261 111 EEIREIVLEKLEAVGLRGAEDLYPA-----ELSGGMKKRVALARALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKE 185 (235)
T ss_pred HHHHHHHHHHHHHcCCchhhcCChh-----hCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHh
Confidence 3445667889999999988887774 79999999999999999999999999999999999999999999998754
Q ss_pred CCCEEEEEecCCChHHHhhhcceEEecCCcEEEEcCcchHH
Q 000979 121 NSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVL 161 (1202)
Q Consensus 121 ~~tTiIiaihQp~~s~~~~fD~IvvL~~G~vvy~G~~~el~ 161 (1202)
.++|||++.|.+. .+.+.+|+|++|++|++++.|+++++.
T Consensus 186 ~~~tvi~vsH~~~-~~~~~~d~v~~l~~G~i~~~g~~~~~~ 225 (235)
T cd03261 186 LGLTSIMVTHDLD-TAFAIADRIAVLYDGKIVAEGTPEELR 225 (235)
T ss_pred cCcEEEEEecCHH-HHHHhcCEEEEEECCeEEEecCHHHHc
Confidence 5778888777554 677889999999999999999988764
|
The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.8e-19 Score=193.97 Aligned_cols=121 Identities=21% Similarity=0.286 Sum_probs=102.7
Q ss_pred hhhhhhHHHHHHHHHhCCcccccccccCCcccccCccccchhhHHHHHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHh
Q 000979 39 EGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNI 118 (1202)
Q Consensus 39 ~~~~~~~~v~~il~~lgL~~~~dT~VG~~~~~gLSGGQKqRvsIAraLv~~P~ILlLDEpTSGLDs~sa~~vv~~L~~~a 118 (1202)
.++|.++.+.++|+..||++-..-+ +....+|||||||||.||.||..+|++|+.||||||||.+...+|++.|+++.
T Consensus 123 ~~~ea~~~a~~~L~~Vgi~~~~~~~--~~YPhelSGGMrQRV~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~ 200 (316)
T COG0444 123 SKKEAKERAIELLELVGIPDPERRL--KSYPHELSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQ 200 (316)
T ss_pred hhHHHHHHHHHHHHHcCCCCHHHHH--hhCCcccCCcHHHHHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHH
Confidence 4566777788899999999743322 35678999999999999999999999999999999999999999999999998
Q ss_pred HhCCCEEEEEecCCChHHHhhhcceEEecCCcEEEEcCcchHHH
Q 000979 119 HINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLE 162 (1202)
Q Consensus 119 ~~~~tTiIiaihQp~~s~~~~fD~IvvL~~G~vvy~G~~~el~~ 162 (1202)
++.++++|+. +|--.-+.+.+|+|+||..|++||.|+.+++..
T Consensus 201 ~e~~~aiilI-THDl~vva~~aDri~VMYaG~iVE~g~~~~i~~ 243 (316)
T COG0444 201 REKGTALILI-THDLGVVAEIADRVAVMYAGRIVEEGPVEEIFK 243 (316)
T ss_pred HhcCCEEEEE-eCCHHHHHHhcceEEEEECcEEEEeCCHHHHhc
Confidence 7667666654 335555888999999999999999999998763
|
|
| >PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=3.5e-19 Score=200.78 Aligned_cols=117 Identities=25% Similarity=0.328 Sum_probs=101.7
Q ss_pred hhhhhHHHHHHHHHhCCc--ccccccccCCcccccCccccchhhHHHHHhcCCeEeeeeCCCccccHHHHHHHHHHHHHH
Q 000979 40 GQEANVITDYYLKVLGLD--VCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQN 117 (1202)
Q Consensus 40 ~~~~~~~v~~il~~lgL~--~~~dT~VG~~~~~gLSGGQKqRvsIAraLv~~P~ILlLDEpTSGLDs~sa~~vv~~L~~~ 117 (1202)
.++.++.++++++.+||+ +..|+.+ +.||||||||++|||||+.+|+||+|||||+|||+.+...+.+.++++
T Consensus 116 ~~~~~~~~~~~l~~~gL~~~~~~~~~~-----~~LSgGq~qrv~iAraL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l 190 (287)
T PRK13637 116 EEEIENRVKRAMNIVGLDYEDYKDKSP-----FELSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKEL 190 (287)
T ss_pred HHHHHHHHHHHHHHcCCCchhhccCCc-----ccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHH
Confidence 445566789999999997 5566655 589999999999999999999999999999999999999999999998
Q ss_pred hHhCCCEEEEEecCCChHHHhhhcceEEecCCcEEEEcCcchHHH
Q 000979 118 IHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLE 162 (1202)
Q Consensus 118 a~~~~tTiIiaihQp~~s~~~~fD~IvvL~~G~vvy~G~~~el~~ 162 (1202)
+++.++|||+++|... ++.+.+|+|++|++|++++.|+.+++.+
T Consensus 191 ~~~~g~tvi~vtHd~~-~~~~~~drv~~l~~G~i~~~g~~~~~~~ 234 (287)
T PRK13637 191 HKEYNMTIILVSHSME-DVAKLADRIIVMNKGKCELQGTPREVFK 234 (287)
T ss_pred HHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 7655788888877654 6778899999999999999999988753
|
|
| >PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=3.2e-19 Score=201.25 Aligned_cols=132 Identities=23% Similarity=0.334 Sum_probs=108.5
Q ss_pred hhhhhHHHHHHHHHhCCc-ccccccccCCcccccCccccchhhHHHHHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHh
Q 000979 40 GQEANVITDYYLKVLGLD-VCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNI 118 (1202)
Q Consensus 40 ~~~~~~~v~~il~~lgL~-~~~dT~VG~~~~~gLSGGQKqRvsIAraLv~~P~ILlLDEpTSGLDs~sa~~vv~~L~~~a 118 (1202)
.++.+++++++++.+||. +-.+..+ +.||||||||++|||+|+.+|+||+|||||+|||+.+...+.+.|+++.
T Consensus 117 ~~~~~~~~~~~l~~~~L~~~~~~~~~-----~~LSgGqkqrvaiA~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~ 191 (288)
T PRK13643 117 KEKAEKIAAEKLEMVGLADEFWEKSP-----FELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIH 191 (288)
T ss_pred HHHHHHHHHHHHHHcCCChhhccCCc-----ccCCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHH
Confidence 445566788999999996 4556554 5899999999999999999999999999999999999999999999876
Q ss_pred HhCCCEEEEEecCCChHHHhhhcceEEecCCcEEEEcCcchHHH---HHHhCCCCCCCCCChh
Q 000979 119 HINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLE---FFASMGFRCPKRKGVA 178 (1202)
Q Consensus 119 ~~~~tTiIiaihQp~~s~~~~fD~IvvL~~G~vvy~G~~~el~~---~F~~lG~~~p~~~n~a 178 (1202)
+ .++||++++|.+ ..+.+.+|+|++|++|+++++|+++++.+ .+...|+.+|.....+
T Consensus 192 ~-~g~til~vtHd~-~~~~~~~dri~~l~~G~i~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~ 252 (288)
T PRK13643 192 Q-SGQTVVLVTHLM-DDVADYADYVYLLEKGHIISCGTPSDVFQEVDFLKAHELGVPKATHFA 252 (288)
T ss_pred H-CCCEEEEEecCH-HHHHHhCCEEEEEECCEEEEECCHHHHHcCHHHHHHcCCCCChHHHHH
Confidence 4 578888887765 46778999999999999999999998753 3445666655544333
|
|
| >PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=3.9e-19 Score=200.76 Aligned_cols=116 Identities=19% Similarity=0.280 Sum_probs=101.6
Q ss_pred hhhhhHHHHHHHHHhCCc-ccccccccCCcccccCccccchhhHHHHHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHh
Q 000979 40 GQEANVITDYYLKVLGLD-VCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNI 118 (1202)
Q Consensus 40 ~~~~~~~v~~il~~lgL~-~~~dT~VG~~~~~gLSGGQKqRvsIAraLv~~P~ILlLDEpTSGLDs~sa~~vv~~L~~~a 118 (1202)
.++.++.++++++.+||. +..|+.+ +.|||||||||+|||+|+.+|+||+|||||+|||+.+...+.+.|++++
T Consensus 118 ~~~~~~~~~~~l~~~gL~~~~~~~~~-----~~LSgGq~qrv~lAraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~ 192 (290)
T PRK13634 118 EEDAKQKAREMIELVGLPEELLARSP-----FELSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLH 192 (290)
T ss_pred HHHHHHHHHHHHHHCCCChhhhhCCc-----ccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHH
Confidence 344456789999999997 5667766 4799999999999999999999999999999999999999999999987
Q ss_pred HhCCCEEEEEecCCChHHHhhhcceEEecCCcEEEEcCcchHH
Q 000979 119 HINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVL 161 (1202)
Q Consensus 119 ~~~~tTiIiaihQp~~s~~~~fD~IvvL~~G~vvy~G~~~el~ 161 (1202)
.+.++|||++.|.+. .+.+.+|+|++|++|++++.|+.+++.
T Consensus 193 ~~~g~tviiitHd~~-~~~~~~drv~~l~~G~i~~~g~~~~~~ 234 (290)
T PRK13634 193 KEKGLTTVLVTHSME-DAARYADQIVVMHKGTVFLQGTPREIF 234 (290)
T ss_pred HhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEECCHHHHh
Confidence 655788888877665 677899999999999999999988774
|
|
| >PRK13536 nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.4e-19 Score=207.50 Aligned_cols=115 Identities=25% Similarity=0.377 Sum_probs=103.8
Q ss_pred hhhhHHHHHHHHHhCCcccccccccCCcccccCccccchhhHHHHHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHhHh
Q 000979 41 QEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHI 120 (1202)
Q Consensus 41 ~~~~~~v~~il~~lgL~~~~dT~VG~~~~~gLSGGQKqRvsIAraLv~~P~ILlLDEpTSGLDs~sa~~vv~~L~~~a~~ 120 (1202)
++.++.++.+++.+||.+..|+.++ .||||||||++||+||+.+|++|+|||||+|||+.+...+++.|+++..
T Consensus 147 ~~~~~~~~~ll~~~~L~~~~~~~~~-----~LS~G~kqrv~lA~aL~~~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~- 220 (340)
T PRK13536 147 REIEAVIPSLLEFARLESKADARVS-----DLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLA- 220 (340)
T ss_pred HHHHHHHHHHHHHcCCchhhCCChh-----hCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-
Confidence 3445567889999999999999985 7999999999999999999999999999999999999999999999865
Q ss_pred CCCEEEEEecCCChHHHhhhcceEEecCCcEEEEcCcchHHH
Q 000979 121 NSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLE 162 (1202)
Q Consensus 121 ~~tTiIiaihQp~~s~~~~fD~IvvL~~G~vvy~G~~~el~~ 162 (1202)
.++||+++.|.. .++-+.+|+|++|++|+++++|+.+++..
T Consensus 221 ~g~tilisSH~l-~e~~~~~d~i~il~~G~i~~~g~~~~l~~ 261 (340)
T PRK13536 221 RGKTILLTTHFM-EEAERLCDRLCVLEAGRKIAEGRPHALID 261 (340)
T ss_pred CCCEEEEECCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 588999987754 58889999999999999999999999875
|
|
| >PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.3e-19 Score=206.33 Aligned_cols=117 Identities=21% Similarity=0.293 Sum_probs=104.5
Q ss_pred hhhhhhHHHHHHHHHhCCcccccccccCCcccccCccccchhhHHHHHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHh
Q 000979 39 EGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNI 118 (1202)
Q Consensus 39 ~~~~~~~~v~~il~~lgL~~~~dT~VG~~~~~gLSGGQKqRvsIAraLv~~P~ILlLDEpTSGLDs~sa~~vv~~L~~~a 118 (1202)
.+.+.++.++++++.+||.+..|... +.|||||||||+|||||+++|+||+|||||||||+.+..++.+.|+++.
T Consensus 109 ~~~~~~~~v~~~l~~~gl~~~~~r~~-----~~LSgGq~QRVaLARaL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~ 183 (351)
T PRK11432 109 PKEERKQRVKEALELVDLAGFEDRYV-----DQISGGQQQRVALARALILKPKVLLFDEPLSNLDANLRRSMREKIRELQ 183 (351)
T ss_pred CHHHHHHHHHHHHHHcCCchhhcCCh-----hhCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHH
Confidence 34566778899999999998877765 5799999999999999999999999999999999999999999999987
Q ss_pred HhCCCEEEEEecCCChHHHhhhcceEEecCCcEEEEcCcchHH
Q 000979 119 HINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVL 161 (1202)
Q Consensus 119 ~~~~tTiIiaihQp~~s~~~~fD~IvvL~~G~vvy~G~~~el~ 161 (1202)
++.++|+|+.+|.+. ++.+++|+|++|++|++++.|+++++.
T Consensus 184 ~~~g~tii~vTHd~~-e~~~laD~i~vm~~G~i~~~g~~~~~~ 225 (351)
T PRK11432 184 QQFNITSLYVTHDQS-EAFAVSDTVIVMNKGKIMQIGSPQELY 225 (351)
T ss_pred HhcCCEEEEEcCCHH-HHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 666788888877554 789999999999999999999998875
|
|
| >TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.2e-19 Score=223.88 Aligned_cols=141 Identities=23% Similarity=0.285 Sum_probs=108.4
Q ss_pred HHHhcCCCCCCCH--HHHHHH-hhhhh--hhhhHHHHHHHHHhCC-------cccccccccCCcccccCccccchhhHHH
Q 000979 17 REKAAGIKPDPDI--DVYMKA-IATEG--QEANVITDYYLKVLGL-------DVCADTMVGDEMIRGISGGQKKRVTTGE 84 (1202)
Q Consensus 17 ~~~~~~~~~~~~~--~~~~~~-~~~~~--~~~~~~v~~il~~lgL-------~~~~dT~VG~~~~~gLSGGQKqRvsIAr 84 (1202)
.++..+.+||... +.+.++ +.... +..++.+++.++..|| ++..||.|| +.++.||||||||++|||
T Consensus 404 ~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~~l~~~~l~~~i~~lp~gldt~i~-~~g~~LSgGqrQRiaLAR 482 (571)
T TIGR02203 404 LRRQVALVSQDVVLFNDTIANNIAYGRTEQADRAEIERALAAAYAQDFVDKLPLGLDTPIG-ENGVLLSGGQRQRLAIAR 482 (571)
T ss_pred HHhhceEEccCcccccccHHHHHhcCCCCCCCHHHHHHHHHHcChHHHHHhCcCcccceec-CCCCcCCHHHHHHHHHHH
Confidence 3455677776433 222222 33221 2234445667776664 567899999 557889999999999999
Q ss_pred HHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHhHhCCCEEEEEecCCChHHHhhhcceEEecCCcEEEEcCcchHHH
Q 000979 85 MMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLE 162 (1202)
Q Consensus 85 aLv~~P~ILlLDEpTSGLDs~sa~~vv~~L~~~a~~~~tTiIiaihQp~~s~~~~fD~IvvL~~G~vvy~G~~~el~~ 162 (1202)
|++++|+|++||||||+||..++..+.+.|++.. +++|.|++| |+.+..+.+|+|++|++|++++.|+|+++++
T Consensus 483 all~~~~illLDEpts~LD~~~~~~i~~~L~~~~-~~~tiIiit---H~~~~~~~~D~ii~l~~g~i~~~g~~~~l~~ 556 (571)
T TIGR02203 483 ALLKDAPILILDEATSALDNESERLVQAALERLM-QGRTTLVIA---HRLSTIEKADRIVVMDDGRIVERGTHNELLA 556 (571)
T ss_pred HHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHh-CCCEEEEEe---hhhHHHHhCCEEEEEeCCEEEeeCCHHHHHH
Confidence 9999999999999999999999999999998864 344445555 5567899999999999999999999999974
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes. |
| >COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.79 E-value=6e-19 Score=168.55 Aligned_cols=121 Identities=23% Similarity=0.326 Sum_probs=103.2
Q ss_pred HHHHHHhhhhhhhhhHHHHHHHHHhCCcccccccccCCcccccCccccchhhHHHHHhcCCeEeeeeCCCccccHHHHHH
Q 000979 30 DVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQ 109 (1202)
Q Consensus 30 ~~~~~~~~~~~~~~~~~v~~il~~lgL~~~~dT~VG~~~~~gLSGGQKqRvsIAraLv~~P~ILlLDEpTSGLDs~sa~~ 109 (1202)
++-.+...+++++.+.+..++|+.|.|...+|..= -.|||||.|||||||||...|.+|++||||.+||++-..+
T Consensus 105 eap~kv~gl~~~qa~~~a~ellkrlrl~~~adr~p-----lhlsggqqqrvaiaralmmkpqvllfdeptaaldpeitaq 179 (242)
T COG4161 105 EAPCRVLGLSKDQALARAEKLLKRLRLKPYADRYP-----LHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQ 179 (242)
T ss_pred hhhHHHhCCCHHHHHHHHHHHHHHhccccccccCc-----eecccchhhhHHHHHHHhcCCcEEeecCcccccCHHHHHH
Confidence 35566678888999999999999999999998763 5799999999999999999999999999999999999999
Q ss_pred HHHHHHHHhHhCCCEEEEEecCCChH-HHhhhcceEEecCCcEEEEcCcc
Q 000979 110 IVNCLRQNIHINSGTAVISLLQPAPE-TYDLFDDIILLSDGQIVYQGPRE 158 (1202)
Q Consensus 110 vv~~L~~~a~~~~tTiIiaihQp~~s-~~~~fD~IvvL~~G~vvy~G~~~ 158 (1202)
|++.+++++..+-|-+|++ | --+ .-+-+.+++-|.+|++||+|+++
T Consensus 180 vv~iikel~~tgitqvivt-h--ev~va~k~as~vvyme~g~ive~g~a~ 226 (242)
T COG4161 180 IVSIIKELAETGITQVIVT-H--EVEVARKTASRVVYMENGHIVEQGDAS 226 (242)
T ss_pred HHHHHHHHHhcCceEEEEE-e--ehhHHHhhhhheEeeecCeeEeecchh
Confidence 9999999886444444554 4 333 34567899999999999999975
|
|
| >PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=2e-19 Score=224.27 Aligned_cols=113 Identities=22% Similarity=0.285 Sum_probs=96.4
Q ss_pred HHHHHHHHHhC-------CcccccccccCCcccccCccccchhhHHHHHhcCCeEeeeeCCCccccHHHHHHHHHHHHHH
Q 000979 45 VITDYYLKVLG-------LDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQN 117 (1202)
Q Consensus 45 ~~v~~il~~lg-------L~~~~dT~VG~~~~~gLSGGQKqRvsIAraLv~~P~ILlLDEpTSGLDs~sa~~vv~~L~~~ 117 (1202)
+.++..++..| |++..||.+| +.++.||||||||++|||||+++|+||+||||||+||+.++..+.+.|++.
T Consensus 439 ~~i~~al~~~~l~~~i~~lp~gldt~i~-~~g~~LSgGq~QRialARall~~~~iliLDEpts~LD~~t~~~i~~~l~~~ 517 (588)
T PRK13657 439 EEMRAAAERAQAHDFIERKPDGYDTVVG-ERGRQLSGGERQRLAIARALLKDPPILILDEATSALDVETEAKVKAALDEL 517 (588)
T ss_pred HHHHHHHHHhCHHHHHHhCcccccchhc-CCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHH
Confidence 33455555555 5678899999 557889999999999999999999999999999999999999999999886
Q ss_pred hHhCCCEEEEEecCCChHHHhhhcceEEecCCcEEEEcCcchHHH
Q 000979 118 IHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLE 162 (1202)
Q Consensus 118 a~~~~tTiIiaihQp~~s~~~~fD~IvvL~~G~vvy~G~~~el~~ 162 (1202)
. .++|.+++| |++++.+.+|+|++|++|++++.|+|+++++
T Consensus 518 ~-~~~tvIiit---Hr~~~~~~~D~ii~l~~G~i~~~g~~~~l~~ 558 (588)
T PRK13657 518 M-KGRTTFIIA---HRLSTVRNADRILVFDNGRVVESGSFDELVA 558 (588)
T ss_pred h-cCCEEEEEE---ecHHHHHhCCEEEEEECCEEEEeCCHHHHHH
Confidence 4 244555556 6668899999999999999999999999974
|
|
| >PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.5e-19 Score=206.49 Aligned_cols=115 Identities=26% Similarity=0.320 Sum_probs=102.4
Q ss_pred hhhhHHHHHHHHHhCCcccccccccCCcccccCccccchhhHHHHHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHhHh
Q 000979 41 QEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHI 120 (1202)
Q Consensus 41 ~~~~~~v~~il~~lgL~~~~dT~VG~~~~~gLSGGQKqRvsIAraLv~~P~ILlLDEpTSGLDs~sa~~vv~~L~~~a~~ 120 (1202)
++.++.++++++.+||++..|+.+ +.||||||||++|||||+.+|+||+|||||||||+.+...+.+.|+++.++
T Consensus 115 ~~~~~~~~~~l~~~gL~~~~~~~~-----~~LSgGq~qRv~lAraL~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~ 189 (343)
T PRK11153 115 AEIKARVTELLELVGLSDKADRYP-----AQLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRE 189 (343)
T ss_pred HHHHHHHHHHHHHcCCchhhhCCh-----hhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh
Confidence 344567889999999998888876 479999999999999999999999999999999999999999999998765
Q ss_pred CCCEEEEEecCCChHHHhhhcceEEecCCcEEEEcCcchHH
Q 000979 121 NSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVL 161 (1202)
Q Consensus 121 ~~tTiIiaihQp~~s~~~~fD~IvvL~~G~vvy~G~~~el~ 161 (1202)
.++|||++.|++. .+.+.+|+|++|++|++++.|+++++.
T Consensus 190 ~g~tiilvtH~~~-~i~~~~d~v~~l~~G~i~~~g~~~~~~ 229 (343)
T PRK11153 190 LGLTIVLITHEMD-VVKRICDRVAVIDAGRLVEQGTVSEVF 229 (343)
T ss_pred cCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 5788888877664 677889999999999999999998875
|
|
| >PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.7e-19 Score=204.68 Aligned_cols=120 Identities=18% Similarity=0.174 Sum_probs=101.5
Q ss_pred hhhhhHHHHHHHHHhCCcccccccccCCcccccCccccchhhHHHHHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHhH
Q 000979 40 GQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIH 119 (1202)
Q Consensus 40 ~~~~~~~v~~il~~lgL~~~~dT~VG~~~~~gLSGGQKqRvsIAraLv~~P~ILlLDEpTSGLDs~sa~~vv~~L~~~a~ 119 (1202)
.++..+.+.++++.+||++..++ ++ ....+|||||||||+|||||+.+|++|++||||||||..+..++++.|+++.+
T Consensus 132 ~~~~~~~~~~~L~~vgL~~~~~~-~~-~~p~~LSgG~~QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~ 209 (330)
T PRK09473 132 KAEAFEESVRMLDAVKMPEARKR-MK-MYPHEFSGGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKR 209 (330)
T ss_pred HHHHHHHHHHHHHHcCCCChHHH-hc-CCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHH
Confidence 34555678889999999865433 33 55689999999999999999999999999999999999999999999999876
Q ss_pred hCCCEEEEEecCCChHHHhhhcceEEecCCcEEEEcCcchHHH
Q 000979 120 INSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLE 162 (1202)
Q Consensus 120 ~~~tTiIiaihQp~~s~~~~fD~IvvL~~G~vvy~G~~~el~~ 162 (1202)
+.++|+++.+|... .+.+.+|+|+||++|++++.|+++++..
T Consensus 210 ~~g~til~iTHdl~-~~~~~~Dri~vm~~G~ive~g~~~~i~~ 251 (330)
T PRK09473 210 EFNTAIIMITHDLG-VVAGICDKVLVMYAGRTMEYGNARDVFY 251 (330)
T ss_pred HcCCEEEEEECCHH-HHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 55777777766554 5567899999999999999999988863
|
|
| >COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.78 E-value=3.2e-19 Score=189.96 Aligned_cols=113 Identities=27% Similarity=0.361 Sum_probs=102.1
Q ss_pred hhhHHHHHHHHHhCCcccccccccCCcccccCccccchhhHHHHHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHhHhC
Q 000979 42 EANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHIN 121 (1202)
Q Consensus 42 ~~~~~v~~il~~lgL~~~~dT~VG~~~~~gLSGGQKqRvsIAraLv~~P~ILlLDEpTSGLDs~sa~~vv~~L~~~a~~~ 121 (1202)
+.++.|++.|+..|+.+-+|-.|| .|||||+|||-|||||+.+|++|+|||||+|+|+.++..+.+.|+++.++
T Consensus 115 ~d~~~v~~aL~~Vgm~~~~~r~i~-----~LSGGQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~e- 188 (254)
T COG1121 115 KDKEKVDEALERVGMEDLRDRQIG-----ELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQE- 188 (254)
T ss_pred HHHHHHHHHHHHcCchhhhCCccc-----ccCcHHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHC-
Confidence 446789999999999999999998 59999999999999999999999999999999999999999999998765
Q ss_pred CCEEEEEecCCChHHHhhhcceEEecCCcEEEEcCcchHHH
Q 000979 122 SGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLE 162 (1202)
Q Consensus 122 ~tTiIiaihQp~~s~~~~fD~IvvL~~G~vvy~G~~~el~~ 162 (1202)
|+||++..| --..+.+.||+|+.|+ +++++.|++++...
T Consensus 189 g~tIl~vtH-DL~~v~~~~D~vi~Ln-~~~~~~G~~~~~~~ 227 (254)
T COG1121 189 GKTVLMVTH-DLGLVMAYFDRVICLN-RHLIASGPPEEVLT 227 (254)
T ss_pred CCEEEEEeC-CcHHhHhhCCEEEEEc-CeeEeccChhhccC
Confidence 888888744 6668899999999996 78899999988763
|
|
| >COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.78 E-value=2e-19 Score=202.08 Aligned_cols=108 Identities=30% Similarity=0.430 Sum_probs=102.0
Q ss_pred HhCCcccccccccCCcccccCccccchhhHHHHHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHhHhCCCEEEEEecCC
Q 000979 53 VLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQP 132 (1202)
Q Consensus 53 ~lgL~~~~dT~VG~~~~~gLSGGQKqRvsIAraLv~~P~ILlLDEpTSGLDs~sa~~vv~~L~~~a~~~~tTiIiaihQp 132 (1202)
++.|++++||.|| +.+.+|||||||||++||||-+||.+++||||-|-||+.-|..+.+++.+..++++++|+|| |
T Consensus 455 Il~lP~GYdT~iG-~~G~~LSgGQRQRIaLARAlYG~P~lvVLDEPNsNLD~~GE~AL~~Ai~~~k~rG~~vvvia---H 530 (580)
T COG4618 455 ILRLPQGYDTRIG-EGGATLSGGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKARGGTVVVIA---H 530 (580)
T ss_pred HHhCcCCccCccC-CCCCCCCchHHHHHHHHHHHcCCCcEEEecCCCCCcchhHHHHHHHHHHHHHHcCCEEEEEe---c
Confidence 6799999999999 67899999999999999999999999999999999999999999999998777788888899 9
Q ss_pred ChHHHhhhcceEEecCCcEEEEcCcchHHHHH
Q 000979 133 APETYDLFDDIILLSDGQIVYQGPRELVLEFF 164 (1202)
Q Consensus 133 ~~s~~~~fD~IvvL~~G~vvy~G~~~el~~~F 164 (1202)
|++.....|+|+||++|++--+|+.+|++...
T Consensus 531 RPs~L~~~Dkilvl~~G~~~~FG~r~eVLa~~ 562 (580)
T COG4618 531 RPSALASVDKILVLQDGRIAAFGPREEVLAKV 562 (580)
T ss_pred CHHHHhhcceeeeecCChHHhcCCHHHHHHHh
Confidence 99999999999999999999999999998754
|
|
| >TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Probab=99.78 E-value=3e-19 Score=220.42 Aligned_cols=103 Identities=27% Similarity=0.396 Sum_probs=90.5
Q ss_pred CcccccccccCCcccccCccccchhhHHHHHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHhHhCCCEEEEEecCCChH
Q 000979 56 LDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPE 135 (1202)
Q Consensus 56 L~~~~dT~VG~~~~~gLSGGQKqRvsIAraLv~~P~ILlLDEpTSGLDs~sa~~vv~~L~~~a~~~~tTiIiaihQp~~s 135 (1202)
|++..||.+| ++++.||||||||++|||||+++|+||+|||||||||+.++..+.+.|++... +++|+|+..|++ +
T Consensus 440 l~~gl~t~~~-~~g~~LSgGq~qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~-~~~tvi~ith~~--~ 515 (544)
T TIGR01842 440 LPDGYDTVIG-PGGATLSGGQRQRIALARALYGDPKLVVLDEPNSNLDEEGEQALANAIKALKA-RGITVVVITHRP--S 515 (544)
T ss_pred CccccccccC-CCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccccCHHHHHHHHHHHHHHhh-CCCEEEEEeCCH--H
Confidence 5667899998 66788999999999999999999999999999999999999999999988643 455666655554 6
Q ss_pred HHhhhcceEEecCCcEEEEcCcchHHH
Q 000979 136 TYDLFDDIILLSDGQIVYQGPRELVLE 162 (1202)
Q Consensus 136 ~~~~fD~IvvL~~G~vvy~G~~~el~~ 162 (1202)
+.+.+|+|++|++|++++.|+|+++++
T Consensus 516 ~~~~~d~i~~l~~G~i~~~g~~~~l~~ 542 (544)
T TIGR01842 516 LLGCVDKILVLQDGRIARFGERDEVLA 542 (544)
T ss_pred HHHhCCEEEEEECCEEEeeCCHHHHhh
Confidence 789999999999999999999999864
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.3e-19 Score=204.07 Aligned_cols=115 Identities=25% Similarity=0.367 Sum_probs=102.6
Q ss_pred hhhhHHHHHHHHHhCCcccccccccCCcccccCccccchhhHHHHHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHhHh
Q 000979 41 QEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHI 120 (1202)
Q Consensus 41 ~~~~~~v~~il~~lgL~~~~dT~VG~~~~~gLSGGQKqRvsIAraLv~~P~ILlLDEpTSGLDs~sa~~vv~~L~~~a~~ 120 (1202)
++.++.++.+++.+||++..|+.++ .||||||||++|||||+.+|++|+|||||+|||+.+...+.+.|++++.
T Consensus 110 ~~~~~~~~~ll~~~~l~~~~~~~~~-----~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~- 183 (303)
T TIGR01288 110 REIEAVIPSLLEFARLESKADVRVA-----LLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLA- 183 (303)
T ss_pred HHHHHHHHHHHHHCCChhHhcCchh-----hCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHh-
Confidence 3344567889999999999999885 7999999999999999999999999999999999999999999999864
Q ss_pred CCCEEEEEecCCChHHHhhhcceEEecCCcEEEEcCcchHHH
Q 000979 121 NSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLE 162 (1202)
Q Consensus 121 ~~tTiIiaihQp~~s~~~~fD~IvvL~~G~vvy~G~~~el~~ 162 (1202)
.++||+++.|++. ++.+.+|+|++|++|++++.|+++++.+
T Consensus 184 ~g~til~~sH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 224 (303)
T TIGR01288 184 RGKTILLTTHFME-EAERLCDRLCVLESGRKIAEGRPHALID 224 (303)
T ss_pred CCCEEEEECCCHH-HHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 5788888877654 7778999999999999999999998864
|
This model does not recognize the highly divergent NodI from Azorhizobium caulinodans. |
| >PRK11607 potG putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=3.5e-19 Score=206.50 Aligned_cols=118 Identities=19% Similarity=0.222 Sum_probs=104.8
Q ss_pred hhhhhhHHHHHHHHHhCCcccccccccCCcccccCccccchhhHHHHHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHh
Q 000979 39 EGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNI 118 (1202)
Q Consensus 39 ~~~~~~~~v~~il~~lgL~~~~dT~VG~~~~~gLSGGQKqRvsIAraLv~~P~ILlLDEpTSGLDs~sa~~vv~~L~~~a 118 (1202)
.+.+.+++++++++.+||.+-.|..+ .+|||||||||+|||||+++|+||+|||||||||..+...+.+.|+++.
T Consensus 122 ~~~~~~~~v~~~l~~l~L~~~~~~~~-----~~LSgGq~QRVaLARAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~ 196 (377)
T PRK11607 122 PKAEIASRVNEMLGLVHMQEFAKRKP-----HQLSGGQRQRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDIL 196 (377)
T ss_pred CHHHHHHHHHHHHHHcCCchhhcCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHH
Confidence 34556677899999999998887776 4799999999999999999999999999999999999999999999887
Q ss_pred HhCCCEEEEEecCCChHHHhhhcceEEecCCcEEEEcCcchHHH
Q 000979 119 HINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLE 162 (1202)
Q Consensus 119 ~~~~tTiIiaihQp~~s~~~~fD~IvvL~~G~vvy~G~~~el~~ 162 (1202)
++.++|+|+++|.+. ++..++|+|++|++|++++.|+++++.+
T Consensus 197 ~~~g~tii~vTHd~~-ea~~laDri~vl~~G~i~~~g~~~~~~~ 239 (377)
T PRK11607 197 ERVGVTCVMVTHDQE-EAMTMAGRIAIMNRGKFVQIGEPEEIYE 239 (377)
T ss_pred HhcCCEEEEEcCCHH-HHHHhCCEEEEEeCCEEEEEcCHHHHHh
Confidence 666788888877554 8899999999999999999999988763
|
|
| >PRK10851 sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=3.4e-19 Score=205.26 Aligned_cols=117 Identities=24% Similarity=0.279 Sum_probs=103.3
Q ss_pred hhhhhHHHHHHHHHhCCcccccccccCCcccccCccccchhhHHHHHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHhH
Q 000979 40 GQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIH 119 (1202)
Q Consensus 40 ~~~~~~~v~~il~~lgL~~~~dT~VG~~~~~gLSGGQKqRvsIAraLv~~P~ILlLDEpTSGLDs~sa~~vv~~L~~~a~ 119 (1202)
.++.++.++++++.+||++..|..+ ..|||||||||+|||||+++|++|+|||||||||..+...+.+.|+++.+
T Consensus 110 ~~~~~~~~~~~l~~~~L~~~~~~~~-----~~LSgGq~QRvalArAL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~ 184 (353)
T PRK10851 110 AAAIKAKVTQLLEMVQLAHLADRYP-----AQLSGGQKQRVALARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHE 184 (353)
T ss_pred HHHHHHHHHHHHHHcCCchhhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHH
Confidence 3455667899999999998888776 47999999999999999999999999999999999999999999999876
Q ss_pred hCCCEEEEEecCCChHHHhhhcceEEecCCcEEEEcCcchHHH
Q 000979 120 INSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLE 162 (1202)
Q Consensus 120 ~~~tTiIiaihQp~~s~~~~fD~IvvL~~G~vvy~G~~~el~~ 162 (1202)
+.++|+|+++| ...++.+++|+|++|++|++++.|+++++.+
T Consensus 185 ~~g~tii~vTH-d~~ea~~~~Dri~vl~~G~i~~~g~~~~i~~ 226 (353)
T PRK10851 185 ELKFTSVFVTH-DQEEAMEVADRVVVMSQGNIEQAGTPDQVWR 226 (353)
T ss_pred hcCCEEEEEeC-CHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 55778777766 4458899999999999999999999988853
|
|
| >PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Probab=99.78 E-value=3.5e-19 Score=206.07 Aligned_cols=117 Identities=24% Similarity=0.272 Sum_probs=104.4
Q ss_pred hhhhhhHHHHHHHHHhCCcccccccccCCcccccCccccchhhHHHHHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHh
Q 000979 39 EGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNI 118 (1202)
Q Consensus 39 ~~~~~~~~v~~il~~lgL~~~~dT~VG~~~~~gLSGGQKqRvsIAraLv~~P~ILlLDEpTSGLDs~sa~~vv~~L~~~a 118 (1202)
.+.+.++.++++++.+||++..|..+ .+|||||||||+|||||+.+|++|+|||||||||..+...+.+.|+++.
T Consensus 117 ~~~~~~~~~~~~l~~~~l~~~~~~~p-----~~LSgGq~QRVaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~ 191 (375)
T PRK09452 117 PAAEITPRVMEALRMVQLEEFAQRKP-----HQLSGGQQQRVAIARAVVNKPKVLLLDESLSALDYKLRKQMQNELKALQ 191 (375)
T ss_pred CHHHHHHHHHHHHHHcCCchhhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHH
Confidence 34455667899999999999888877 4799999999999999999999999999999999999999999999987
Q ss_pred HhCCCEEEEEecCCChHHHhhhcceEEecCCcEEEEcCcchHH
Q 000979 119 HINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVL 161 (1202)
Q Consensus 119 ~~~~tTiIiaihQp~~s~~~~fD~IvvL~~G~vvy~G~~~el~ 161 (1202)
++.++|+|+++|.+ .++..++|+|++|++|++++.|+++++.
T Consensus 192 ~~~g~tiI~vTHd~-~ea~~laDri~vl~~G~i~~~g~~~~i~ 233 (375)
T PRK09452 192 RKLGITFVFVTHDQ-EEALTMSDRIVVMRDGRIEQDGTPREIY 233 (375)
T ss_pred HhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 76688888877754 5789999999999999999999998875
|
|
| >PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=3.6e-19 Score=203.50 Aligned_cols=120 Identities=22% Similarity=0.212 Sum_probs=100.0
Q ss_pred hhhhhHHHHHHHHHhCCcccccccccCCcccccCccccchhhHHHHHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHhH
Q 000979 40 GQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIH 119 (1202)
Q Consensus 40 ~~~~~~~v~~il~~lgL~~~~dT~VG~~~~~gLSGGQKqRvsIAraLv~~P~ILlLDEpTSGLDs~sa~~vv~~L~~~a~ 119 (1202)
.++.++.++++++.+||.+-.+. . +....+|||||||||+|||||+.+|+||++||||||||..+..++++.|+++.+
T Consensus 124 ~~~~~~~~~~~L~~~gL~~~~~~-l-~~~p~~LSgGq~QRv~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~ 201 (326)
T PRK11022 124 KKTRRQRAIDLLNQVGIPDPASR-L-DVYPHQLSGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQ 201 (326)
T ss_pred HHHHHHHHHHHHHHCCCCChHHH-H-hCCchhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH
Confidence 34556778999999999753211 1 133468999999999999999999999999999999999999999999999876
Q ss_pred hCCCEEEEEecCCChHHHhhhcceEEecCCcEEEEcCcchHHH
Q 000979 120 INSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLE 162 (1202)
Q Consensus 120 ~~~tTiIiaihQp~~s~~~~fD~IvvL~~G~vvy~G~~~el~~ 162 (1202)
+.++|+++++|... .+.+.+|+|+||++|++++.|+.+++.+
T Consensus 202 ~~g~til~iTHdl~-~~~~~adri~vm~~G~ive~g~~~~~~~ 243 (326)
T PRK11022 202 KENMALVLITHDLA-LVAEAAHKIIVMYAGQVVETGKAHDIFR 243 (326)
T ss_pred hcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEECCHHHHhh
Confidence 56777777666444 5668899999999999999999988863
|
|
| >PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=3.7e-19 Score=206.76 Aligned_cols=116 Identities=23% Similarity=0.293 Sum_probs=103.2
Q ss_pred hhhhHHHHHHHHHhCCcccccccccCCcccccCccccchhhHHHHHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHhHh
Q 000979 41 QEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHI 120 (1202)
Q Consensus 41 ~~~~~~v~~il~~lgL~~~~dT~VG~~~~~gLSGGQKqRvsIAraLv~~P~ILlLDEpTSGLDs~sa~~vv~~L~~~a~~ 120 (1202)
.+.++.++++++.+||.+..|..++ +|||||||||+|||||+.+|+||+|||||||||..+...+.+.|+++.++
T Consensus 108 ~~~~~~~~~~l~~lgL~~~~~~~~~-----~LSgGq~QRvaLAraL~~~P~lLLLDEPts~LD~~~~~~l~~~L~~l~~~ 182 (369)
T PRK11000 108 EEINQRVNQVAEVLQLAHLLDRKPK-----ALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKR 182 (369)
T ss_pred HHHHHHHHHHHHHcCChhhhcCChh-----hCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHH
Confidence 4455678999999999988888774 79999999999999999999999999999999999999999999998765
Q ss_pred CCCEEEEEecCCChHHHhhhcceEEecCCcEEEEcCcchHHH
Q 000979 121 NSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLE 162 (1202)
Q Consensus 121 ~~tTiIiaihQp~~s~~~~fD~IvvL~~G~vvy~G~~~el~~ 162 (1202)
.++|+|+++|++. ++.+.+|+|++|++|++++.|+++++..
T Consensus 183 ~g~tvI~vTHd~~-~~~~~~d~i~vl~~G~i~~~g~~~~i~~ 223 (369)
T PRK11000 183 LGRTMIYVTHDQV-EAMTLADKIVVLDAGRVAQVGKPLELYH 223 (369)
T ss_pred hCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 5788888877654 7889999999999999999999988753
|
|
| >cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system | Back alignment and domain information |
|---|
Probab=99.78 E-value=4.9e-19 Score=195.50 Aligned_cols=113 Identities=26% Similarity=0.319 Sum_probs=99.3
Q ss_pred hhHHHHHHHHHhCCcccccccccCCcccccCccccchhhHHHHHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHhHhCC
Q 000979 43 ANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINS 122 (1202)
Q Consensus 43 ~~~~v~~il~~lgL~~~~dT~VG~~~~~gLSGGQKqRvsIAraLv~~P~ILlLDEpTSGLDs~sa~~vv~~L~~~a~~~~ 122 (1202)
..+.++++++.+||.+..++.+ ..||||||||++|||||+++|+||+|||||+|||+.+...+.+.|++++++.+
T Consensus 121 ~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~ 195 (241)
T cd03256 121 EKQRALAALERVGLLDKAYQRA-----DQLSGGQQQRVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEG 195 (241)
T ss_pred HHHHHHHHHHHcCChhhhCCCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcC
Confidence 3456788999999988777765 47999999999999999999999999999999999999999999999876557
Q ss_pred CEEEEEecCCChHHHhhhcceEEecCCcEEEEcCcchHH
Q 000979 123 GTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVL 161 (1202)
Q Consensus 123 tTiIiaihQp~~s~~~~fD~IvvL~~G~vvy~G~~~el~ 161 (1202)
+|||++.|++. ++.+.+|++++|++|++++.|+++++.
T Consensus 196 ~tii~~tH~~~-~~~~~~d~v~~l~~G~i~~~~~~~~~~ 233 (241)
T cd03256 196 ITVIVSLHQVD-LAREYADRIVGLKDGRIVFDGPPAELT 233 (241)
T ss_pred CEEEEEeCCHH-HHHHhCCEEEEEECCEEEeecCHHHhh
Confidence 88888877655 677799999999999999999988764
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea | Back alignment and domain information |
|---|
Probab=99.78 E-value=4.2e-19 Score=198.50 Aligned_cols=115 Identities=24% Similarity=0.259 Sum_probs=101.9
Q ss_pred hhhHHHHHHHHHhCCcccccccccCCcccccCccccchhhHHHHHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHhHhC
Q 000979 42 EANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHIN 121 (1202)
Q Consensus 42 ~~~~~v~~il~~lgL~~~~dT~VG~~~~~gLSGGQKqRvsIAraLv~~P~ILlLDEpTSGLDs~sa~~vv~~L~~~a~~~ 121 (1202)
+..+.++++++.+||.+..++.++ .||||||||++|||||+.+|+||+|||||+|||..+...+.+.+++++...
T Consensus 136 ~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~Gq~qrv~lAral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~ 210 (269)
T cd03294 136 EREERAAEALELVGLEGWEHKYPD-----ELSGGMQQRVGLARALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAEL 210 (269)
T ss_pred HHHHHHHHHHHHcCCHhHhhCCcc-----cCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhc
Confidence 344567889999999988888875 699999999999999999999999999999999999999999999987555
Q ss_pred CCEEEEEecCCChHHHhhhcceEEecCCcEEEEcCcchHHH
Q 000979 122 SGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLE 162 (1202)
Q Consensus 122 ~tTiIiaihQp~~s~~~~fD~IvvL~~G~vvy~G~~~el~~ 162 (1202)
++|||++.|++. ++.+.+|++++|++|+++++|+++++.+
T Consensus 211 g~tiii~tH~~~-~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 250 (269)
T cd03294 211 QKTIVFITHDLD-EALRLGDRIAIMKDGRLVQVGTPEEILT 250 (269)
T ss_pred CCEEEEEeCCHH-HHHHhcCEEEEEECCEEEEeCCHHHHHh
Confidence 788888877654 6778999999999999999999888753
|
This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=5.2e-19 Score=202.05 Aligned_cols=118 Identities=19% Similarity=0.213 Sum_probs=99.8
Q ss_pred hhhhhhHHHHHHHHHhCCc-ccccccccCCcccccCccccchhhHHHHHhcCCeEeeeeCCCccccHHHHHHHHHHHHHH
Q 000979 39 EGQEANVITDYYLKVLGLD-VCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQN 117 (1202)
Q Consensus 39 ~~~~~~~~v~~il~~lgL~-~~~dT~VG~~~~~gLSGGQKqRvsIAraLv~~P~ILlLDEpTSGLDs~sa~~vv~~L~~~ 117 (1202)
.+.+.++.++++++.+||. +..|..+ +.|||||||||+|||||+.+|+||++||||||||..+..++++.|+++
T Consensus 126 ~~~~~~~~~~~~l~~~gL~~~~~~~~p-----~~LSgGq~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l 200 (327)
T PRK11308 126 SAAERREKALAMMAKVGLRPEHYDRYP-----HMFSGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDL 200 (327)
T ss_pred CHHHHHHHHHHHHHHCCCChHHhcCCC-----ccCCHHHHHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHH
Confidence 3445566789999999996 4667765 479999999999999999999999999999999999999999999998
Q ss_pred hHhCCCEEEEEecCCChHHHhhhcceEEecCCcEEEEcCcchHHH
Q 000979 118 IHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLE 162 (1202)
Q Consensus 118 a~~~~tTiIiaihQp~~s~~~~fD~IvvL~~G~vvy~G~~~el~~ 162 (1202)
.++.++|+++++|. ...+.+.+|+|++|++|++++.|+.+++.+
T Consensus 201 ~~~~g~til~iTHd-l~~~~~~adrv~vm~~G~ive~g~~~~~~~ 244 (327)
T PRK11308 201 QQELGLSYVFISHD-LSVVEHIADEVMVMYLGRCVEKGTKEQIFN 244 (327)
T ss_pred HHHcCCEEEEEeCC-HHHHHHhCCEEEEEECCEEEEECCHHHHhc
Confidence 76557777665553 335556899999999999999999988864
|
|
| >PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=5.2e-19 Score=219.11 Aligned_cols=103 Identities=28% Similarity=0.358 Sum_probs=90.7
Q ss_pred CCcccccccccCCcccccCccccchhhHHHHHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHhHhCCCEEEEEecCCCh
Q 000979 55 GLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAP 134 (1202)
Q Consensus 55 gL~~~~dT~VG~~~~~gLSGGQKqRvsIAraLv~~P~ILlLDEpTSGLDs~sa~~vv~~L~~~a~~~~tTiIiaihQp~~ 134 (1202)
.|+++.||.+| +++..||||||||++|||||+++|+||+|||||||||+.++..+.+.|++.. +++|+|+.. |+.
T Consensus 436 ~lp~gl~t~~~-~~g~~LSgGq~qRi~lARall~~~~illlDEpts~LD~~~~~~i~~~l~~~~--~~~tii~it--H~~ 510 (569)
T PRK10789 436 RLPQGYDTEVG-ERGVMLSGGQKQRISIARALLLNAEILILDDALSAVDGRTEHQILHNLRQWG--EGRTVIISA--HRL 510 (569)
T ss_pred hCcCcccceec-CCCCcCCHHHHHHHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHHh--CCCEEEEEe--cch
Confidence 56788999999 5678899999999999999999999999999999999999999999998864 345555544 455
Q ss_pred HHHhhhcceEEecCCcEEEEcCcchHHH
Q 000979 135 ETYDLFDDIILLSDGQIVYQGPRELVLE 162 (1202)
Q Consensus 135 s~~~~fD~IvvL~~G~vvy~G~~~el~~ 162 (1202)
++.+.+|+|++|++|+++++|+|+++++
T Consensus 511 ~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 538 (569)
T PRK10789 511 SALTEASEILVMQHGHIAQRGNHDQLAQ 538 (569)
T ss_pred hHHHcCCEEEEEeCCEEEEecCHHHHHH
Confidence 7889999999999999999999999975
|
|
| >COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.77 E-value=4e-19 Score=178.93 Aligned_cols=129 Identities=22% Similarity=0.280 Sum_probs=105.4
Q ss_pred CHHHHHHHhhhhhhhhhHHHHHHHHHhCCc-ccccccccCCcccccCccccchhhHHHHHhcCCeEeeeeCCCccccHHH
Q 000979 28 DIDVYMKAIATEGQEANVITDYYLKVLGLD-VCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSST 106 (1202)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~v~~il~~lgL~-~~~dT~VG~~~~~gLSGGQKqRvsIAraLv~~P~ILlLDEpTSGLDs~s 106 (1202)
++..=.+......++.+++|+.-|+.-+|= ++.|-+= ..+.+|||||+||++|||||.-+|+||+|||||||||+.|
T Consensus 107 NVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKDrL~--~sa~~LSGGQQQRLcIARalAv~PeVlLmDEPtSALDPIs 184 (253)
T COG1117 107 NVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKDRLH--KSALGLSGGQQQRLCIARALAVKPEVLLMDEPTSALDPIS 184 (253)
T ss_pred HHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHHHhh--CCccCCChhHHHHHHHHHHHhcCCcEEEecCcccccCchh
Confidence 333334555565677788888888888886 4666552 4457899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhHhCCCEEEEEecCCChHHHhhhcceEEecCCcEEEEcCcchHH
Q 000979 107 TFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVL 161 (1202)
Q Consensus 107 a~~vv~~L~~~a~~~~tTiIiaihQp~~s~~~~fD~IvvL~~G~vvy~G~~~el~ 161 (1202)
..+|=+.+.++. +.-||||.+| -....-+-.|+...+..|++||+|+.+++-
T Consensus 185 T~kIEeLi~eLk--~~yTIviVTH-nmqQAaRvSD~taFf~~G~LvE~g~T~~iF 236 (253)
T COG1117 185 TLKIEELITELK--KKYTIVIVTH-NMQQAARVSDYTAFFYLGELVEFGPTDKIF 236 (253)
T ss_pred HHHHHHHHHHHH--hccEEEEEeC-CHHHHHHHhHhhhhhcccEEEEEcCHHhhh
Confidence 999988888864 5667777766 455778899999999999999999988774
|
|
| >cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import | Back alignment and domain information |
|---|
Probab=99.77 E-value=5.9e-19 Score=194.29 Aligned_cols=113 Identities=24% Similarity=0.304 Sum_probs=99.8
Q ss_pred hhHHHHHHHHHhCCcccccccccCCcccccCccccchhhHHHHHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHhHhCC
Q 000979 43 ANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINS 122 (1202)
Q Consensus 43 ~~~~v~~il~~lgL~~~~dT~VG~~~~~gLSGGQKqRvsIAraLv~~P~ILlLDEpTSGLDs~sa~~vv~~L~~~a~~~~ 122 (1202)
..+.++.+++.+||.+..+..++ .||||||||++|||||+.+|+||+|||||+|||..++..+.+.|++++++.+
T Consensus 113 ~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~ 187 (239)
T cd03296 113 IRAKVHELLKLVQLDWLADRYPA-----QLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELH 187 (239)
T ss_pred HHHHHHHHHHHcCChhhhhcChh-----hCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcC
Confidence 34567889999999887777764 7999999999999999999999999999999999999999999999876557
Q ss_pred CEEEEEecCCChHHHhhhcceEEecCCcEEEEcCcchHH
Q 000979 123 GTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVL 161 (1202)
Q Consensus 123 tTiIiaihQp~~s~~~~fD~IvvL~~G~vvy~G~~~el~ 161 (1202)
+|||++.|++. ++.+.+|+|++|++|++++.|+++++.
T Consensus 188 ~tvii~sH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~~ 225 (239)
T cd03296 188 VTTVFVTHDQE-EALEVADRVVVMNKGRIEQVGTPDEVY 225 (239)
T ss_pred CEEEEEeCCHH-HHHHhCCEEEEEECCeEEEecCHHHHh
Confidence 88888877664 677889999999999999999988764
|
Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=6.1e-19 Score=201.61 Aligned_cols=118 Identities=20% Similarity=0.190 Sum_probs=99.7
Q ss_pred hhhhhhHHHHHHHHHhCCc-ccccccccCCcccccCccccchhhHHHHHhcCCeEeeeeCCCccccHHHHHHHHHHHHHH
Q 000979 39 EGQEANVITDYYLKVLGLD-VCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQN 117 (1202)
Q Consensus 39 ~~~~~~~~v~~il~~lgL~-~~~dT~VG~~~~~gLSGGQKqRvsIAraLv~~P~ILlLDEpTSGLDs~sa~~vv~~L~~~ 117 (1202)
.+++.++.++++++.+||. +..|... .+|||||||||+|||||+.+|++|++||||||||..+..++++.|+++
T Consensus 133 ~~~~~~~~~~~~l~~vgl~~~~~~~~p-----~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l 207 (331)
T PRK15079 133 SRQEVKDRVKAMMLKVGLLPNLINRYP-----HEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQL 207 (331)
T ss_pred CHHHHHHHHHHHHHHcCCChHHhcCCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHH
Confidence 3455667788999999994 4556655 589999999999999999999999999999999999999999999998
Q ss_pred hHhCCCEEEEEecCCChHHHhhhcceEEecCCcEEEEcCcchHHH
Q 000979 118 IHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLE 162 (1202)
Q Consensus 118 a~~~~tTiIiaihQp~~s~~~~fD~IvvL~~G~vvy~G~~~el~~ 162 (1202)
.++.++|+++.+|. ...+.+.+|+|+||.+|++++.|+.+++.+
T Consensus 208 ~~~~~~til~iTHd-l~~~~~~~dri~vl~~G~ive~g~~~~i~~ 251 (331)
T PRK15079 208 QREMGLSLIFIAHD-LAVVKHISDRVLVMYLGHAVELGTYDEVYH 251 (331)
T ss_pred HHHcCCEEEEEeCC-HHHHHHhCCEEEEEECCEEEEEcCHHHHHc
Confidence 66557777776553 346667899999999999999999988763
|
|
| >COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.77 E-value=5.1e-19 Score=196.97 Aligned_cols=129 Identities=22% Similarity=0.263 Sum_probs=114.2
Q ss_pred CHHHHHHHhhhhhhhhhHHHHHHHHHhCCcccccccccCCcccccCccccchhhHHHHHhcCCeEeeeeCCCccccHHHH
Q 000979 28 DIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTT 107 (1202)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~v~~il~~lgL~~~~dT~VG~~~~~gLSGGQKqRvsIAraLv~~P~ILlLDEpTSGLDs~sa 107 (1202)
|+..-++...+.+++.+++|+++.+.|+|+|-.|.+- ++|||||||||||||||+++|++++||||.|.||....
T Consensus 95 Niaf~Lk~~~~~k~ei~~rV~eva~~L~l~~lL~r~P-----~~LSGGQrQRVAlaRAlVr~P~v~L~DEPlSnLDa~lR 169 (338)
T COG3839 95 NIAFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLNRKP-----LQLSGGQRQRVALARALVRKPKVFLLDEPLSNLDAKLR 169 (338)
T ss_pred HhhhhhhhCCCchHHHHHHHHHHHHHcCChhHHhcCc-----ccCChhhHHHHHHHHHHhcCCCEEEecCchhHhhHHHH
Confidence 4445556666778899999999999999999999885 58999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhHhCCCEEEEEecCCChHHHhhhcceEEecCCcEEEEcCcchHHH
Q 000979 108 FQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLE 162 (1202)
Q Consensus 108 ~~vv~~L~~~a~~~~tTiIiaihQp~~s~~~~fD~IvvL~~G~vvy~G~~~el~~ 162 (1202)
.+....++++-++.++|+|..+| .-.|...++|||+||++|++...|++.|+-+
T Consensus 170 ~~mr~ei~~lh~~l~~T~IYVTH-Dq~EAmtladri~Vm~~G~i~Q~g~p~ely~ 223 (338)
T COG3839 170 VLMRSEIKKLHERLGTTTIYVTH-DQVEAMTLADRIVVMNDGRIQQVGTPLELYE 223 (338)
T ss_pred HHHHHHHHHHHHhcCCcEEEEcC-CHHHHHhhCCEEEEEeCCeeeecCChHHHhh
Confidence 99999999876666777777766 5569999999999999999999999999864
|
|
| >TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Probab=99.77 E-value=4.8e-19 Score=201.10 Aligned_cols=114 Identities=22% Similarity=0.318 Sum_probs=101.9
Q ss_pred hhhhHHHHHHHHHhCCcccccccccCCcccccCccccchhhHHHHHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHhHh
Q 000979 41 QEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHI 120 (1202)
Q Consensus 41 ~~~~~~v~~il~~lgL~~~~dT~VG~~~~~gLSGGQKqRvsIAraLv~~P~ILlLDEpTSGLDs~sa~~vv~~L~~~a~~ 120 (1202)
++..+.++++++.+||++..|..++ .||||||||++||+||+++|++|+|||||+|||+.+...+++.++++. +
T Consensus 108 ~~~~~~~~~~l~~~gl~~~~~~~~~-----~LS~G~~qrv~la~al~~~p~lliLDEPt~gLD~~~~~~l~~~l~~~~-~ 181 (301)
T TIGR03522 108 QLLKQRVEEMIELVGLRPEQHKKIG-----QLSKGYRQRVGLAQALIHDPKVLILDEPTTGLDPNQLVEIRNVIKNIG-K 181 (301)
T ss_pred HHHHHHHHHHHHHCCCchHhcCchh-----hCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHhc-C
Confidence 4445678999999999999988874 799999999999999999999999999999999999999999999875 3
Q ss_pred CCCEEEEEecCCChHHHhhhcceEEecCCcEEEEcCcchHHH
Q 000979 121 NSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLE 162 (1202)
Q Consensus 121 ~~tTiIiaihQp~~s~~~~fD~IvvL~~G~vvy~G~~~el~~ 162 (1202)
++||+++.|++. ++.+.+|+|++|++|++++.|+.+++..
T Consensus 182 -~~tiii~sH~l~-~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 221 (301)
T TIGR03522 182 -DKTIILSTHIMQ-EVEAICDRVIIINKGKIVADKKLDELSA 221 (301)
T ss_pred -CCEEEEEcCCHH-HHHHhCCEEEEEECCEEEEeCCHHHHHH
Confidence 588888877554 7889999999999999999999999875
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. |
| >TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Probab=99.77 E-value=8e-19 Score=200.99 Aligned_cols=116 Identities=25% Similarity=0.245 Sum_probs=102.9
Q ss_pred hhhhHHHHHHHHHhCCcccccccccCCcccccCccccchhhHHHHHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHhHh
Q 000979 41 QEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHI 120 (1202)
Q Consensus 41 ~~~~~~v~~il~~lgL~~~~dT~VG~~~~~gLSGGQKqRvsIAraLv~~P~ILlLDEpTSGLDs~sa~~vv~~L~~~a~~ 120 (1202)
.+.++.++++++.+||++..|..+ .+|||||||||+|||||+++|++|+|||||||||..+...+.+.|+++.++
T Consensus 75 ~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgGq~qRvalaraL~~~p~lllLDEP~s~LD~~~~~~l~~~l~~l~~~ 149 (325)
T TIGR01187 75 AEIKPRVLEALRLVQLEEFADRKP-----HQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQ 149 (325)
T ss_pred HHHHHHHHHHHHHcCCcchhcCCh-----hhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHh
Confidence 344567889999999998888776 479999999999999999999999999999999999999999999998765
Q ss_pred CCCEEEEEecCCChHHHhhhcceEEecCCcEEEEcCcchHHH
Q 000979 121 NSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLE 162 (1202)
Q Consensus 121 ~~tTiIiaihQp~~s~~~~fD~IvvL~~G~vvy~G~~~el~~ 162 (1202)
.++|+|+++|.+ .++.+++|+|++|++|++++.|+++++.+
T Consensus 150 ~g~tiiivTHd~-~e~~~~~d~i~vl~~G~i~~~g~~~~~~~ 190 (325)
T TIGR01187 150 LGITFVFVTHDQ-EEAMTMSDRIAIMRKGKIAQIGTPEEIYE 190 (325)
T ss_pred cCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 678888887765 47889999999999999999999988853
|
This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included). |
| >TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.77 E-value=6.6e-19 Score=194.64 Aligned_cols=112 Identities=25% Similarity=0.286 Sum_probs=98.4
Q ss_pred hhHHHHHHHHHhCCcccccccccCCcccccCccccchhhHHHHHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHhHhCC
Q 000979 43 ANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINS 122 (1202)
Q Consensus 43 ~~~~v~~il~~lgL~~~~dT~VG~~~~~gLSGGQKqRvsIAraLv~~P~ILlLDEpTSGLDs~sa~~vv~~L~~~a~~~~ 122 (1202)
.++.++++++.+||.+..|..+ ..||||||||++|||||+.+|+||+|||||+|||..+...+.+.|+++.++.+
T Consensus 122 ~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~ 196 (243)
T TIGR02315 122 DKERALSALERVGLADKAYQRA-----DQLSGGQQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDG 196 (243)
T ss_pred HHHHHHHHHHHcCcHhhhcCCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcC
Confidence 3456788999999988777765 47999999999999999999999999999999999999999999998865557
Q ss_pred CEEEEEecCCChHHHhhhcceEEecCCcEEEEcCcchH
Q 000979 123 GTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELV 160 (1202)
Q Consensus 123 tTiIiaihQp~~s~~~~fD~IvvL~~G~vvy~G~~~el 160 (1202)
+|+|++.|++. .+.+.+|++++|++|++++.|+++++
T Consensus 197 ~tiii~tH~~~-~~~~~~d~v~~l~~G~i~~~~~~~~~ 233 (243)
T TIGR02315 197 ITVIINLHQVD-LAKKYADRIVGLKAGEIVFDGAPSEL 233 (243)
T ss_pred CEEEEEeCCHH-HHHHhcCeEEEEECCEEEecCCHHHh
Confidence 88888877655 56788999999999999999998775
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates. |
| >cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin | Back alignment and domain information |
|---|
Probab=99.77 E-value=8.2e-19 Score=190.67 Aligned_cols=114 Identities=25% Similarity=0.354 Sum_probs=99.6
Q ss_pred hhhhHHHHHHHHHhCCcccccccccCCcccccCccccchhhHHHHHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHhHh
Q 000979 41 QEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHI 120 (1202)
Q Consensus 41 ~~~~~~v~~il~~lgL~~~~dT~VG~~~~~gLSGGQKqRvsIAraLv~~P~ILlLDEpTSGLDs~sa~~vv~~L~~~a~~ 120 (1202)
++.++.++.+++.+||++..|+.++ .||||||||++||+||+.+|++|+|||||+|||..+...+.+.|++++++
T Consensus 106 ~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qr~~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~ 180 (220)
T cd03265 106 AERRERIDELLDFVGLLEAADRLVK-----TYSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEE 180 (220)
T ss_pred HHHHHHHHHHHHHcCCHHHhhCChh-----hCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHh
Confidence 3345567899999999988888874 79999999999999999999999999999999999999999999998764
Q ss_pred CCCEEEEEecCCChHHHhhhcceEEecCCcEEEEcCcchH
Q 000979 121 NSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELV 160 (1202)
Q Consensus 121 ~~tTiIiaihQp~~s~~~~fD~IvvL~~G~vvy~G~~~el 160 (1202)
.++|+|++.|.+. ++.+.+|+|++|.+|++++.|+++++
T Consensus 181 ~~~tvi~~tH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~ 219 (220)
T cd03265 181 FGMTILLTTHYME-EAEQLCDRVAIIDHGRIIAEGTPEEL 219 (220)
T ss_pred cCCEEEEEeCCHH-HHHHhCCEEEEEeCCEEEEeCChHHc
Confidence 4778888766544 67788999999999999999987654
|
In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.2e-18 Score=198.44 Aligned_cols=114 Identities=25% Similarity=0.436 Sum_probs=96.9
Q ss_pred hhhhHHHHHHHHHhCCc-ccccccccCCcccccCccccchhhHHHHHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHhH
Q 000979 41 QEANVITDYYLKVLGLD-VCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIH 119 (1202)
Q Consensus 41 ~~~~~~v~~il~~lgL~-~~~dT~VG~~~~~gLSGGQKqRvsIAraLv~~P~ILlLDEpTSGLDs~sa~~vv~~L~~~a~ 119 (1202)
++..++++.+++.+||+ +..+.. ...||||||||++|||||+.+|+||+|||||||||+.++..+.+.|+++..
T Consensus 150 ~~~~~~~~~~l~~~gL~~~~~~~~-----~~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~ 224 (320)
T PRK13631 150 SEAKKLAKFYLNKMGLDDSYLERS-----PFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKA 224 (320)
T ss_pred HHHHHHHHHHHHHcCCChhHhcCC-----cccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHH
Confidence 44556788899999997 344444 458999999999999999999999999999999999999999999998764
Q ss_pred hCCCEEEEEecCCChHHHhhhcceEEecCCcEEEEcCcchHH
Q 000979 120 INSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVL 161 (1202)
Q Consensus 120 ~~~tTiIiaihQp~~s~~~~fD~IvvL~~G~vvy~G~~~el~ 161 (1202)
.++|||++.|.+. .+.+.+|+|++|++|++++.|+++++.
T Consensus 225 -~g~TiiivtHd~~-~~~~~adri~vl~~G~i~~~g~~~~~~ 264 (320)
T PRK13631 225 -NNKTVFVITHTME-HVLEVADEVIVMDKGKILKTGTPYEIF 264 (320)
T ss_pred -CCCEEEEEecCHH-HHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 5777777666543 567899999999999999999998875
|
|
| >COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.77 E-value=7.7e-19 Score=184.13 Aligned_cols=116 Identities=21% Similarity=0.250 Sum_probs=100.8
Q ss_pred CHHHHHHHhhhhhhhhhHHHHHHHHHhCCcccccccccCCcccccCccccchhhHHHHHhcCCeEeeeeCCCccccHHHH
Q 000979 28 DIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTT 107 (1202)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~v~~il~~lgL~~~~dT~VG~~~~~gLSGGQKqRvsIAraLv~~P~ILlLDEpTSGLDs~sa 107 (1202)
|+..-.+.....+.|++++++++|+..||.+..|.+= ++|||||||||||||||+.+|+||+||||-+|||+.++
T Consensus 92 NV~l~l~~~~~~~~e~~~~a~~~L~~VgL~~~~~~~P-----~qLSGGMrQRVaiARAL~~~P~lLLlDEPFgALDalTR 166 (248)
T COG1116 92 NVALGLELRGKSKAEARERAKELLELVGLAGFEDKYP-----HQLSGGMRQRVAIARALATRPKLLLLDEPFGALDALTR 166 (248)
T ss_pred hheehhhccccchHhHHHHHHHHHHHcCCcchhhcCc-----cccChHHHHHHHHHHHHhcCCCEEEEcCCcchhhHHHH
Confidence 3334344444567778889999999999999998874 69999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhHhCCCEEEEEecCCChHHHhhhcceEEecCC
Q 000979 108 FQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDG 149 (1202)
Q Consensus 108 ~~vv~~L~~~a~~~~tTiIiaihQp~~s~~~~fD~IvvL~~G 149 (1202)
..+++.|.++-.+.++||+..+| -=.|.+.++|||+||+++
T Consensus 167 ~~lq~~l~~lw~~~~~TvllVTH-di~EAv~LsdRivvl~~~ 207 (248)
T COG1116 167 EELQDELLRLWEETRKTVLLVTH-DVDEAVYLADRVVVLSNR 207 (248)
T ss_pred HHHHHHHHHHHHhhCCEEEEEeC-CHHHHHhhhCEEEEecCC
Confidence 99999999998888888888766 455899999999999984
|
|
| >cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine | Back alignment and domain information |
|---|
Probab=99.77 E-value=7.9e-19 Score=193.15 Aligned_cols=113 Identities=22% Similarity=0.302 Sum_probs=99.4
Q ss_pred hhhHHHHHHHHHhCCcccccccccCCcccccCccccchhhHHHHHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHhHhC
Q 000979 42 EANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHIN 121 (1202)
Q Consensus 42 ~~~~~v~~il~~lgL~~~~dT~VG~~~~~gLSGGQKqRvsIAraLv~~P~ILlLDEpTSGLDs~sa~~vv~~L~~~a~~~ 121 (1202)
+.++.++++++.+||++..|+.+ +.||||||||++|||||+.+|++|+|||||+|||..+...+.+.|++++. .
T Consensus 119 ~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~ 192 (236)
T cd03219 119 EARERAEELLERVGLADLADRPA-----GELSYGQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAELIRELRE-R 192 (236)
T ss_pred HHHHHHHHHHHHcCccchhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH-C
Confidence 34556788999999998777776 47999999999999999999999999999999999999999999998765 6
Q ss_pred CCEEEEEecCCChHHHhhhcceEEecCCcEEEEcCcchHH
Q 000979 122 SGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVL 161 (1202)
Q Consensus 122 ~tTiIiaihQp~~s~~~~fD~IvvL~~G~vvy~G~~~el~ 161 (1202)
++|+|++.|++. .+.+.+|+|++|++|++++.|+++++.
T Consensus 193 ~~tii~vsH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~~ 231 (236)
T cd03219 193 GITVLLVEHDMD-VVMSLADRVTVLDQGRVIAEGTPDEVR 231 (236)
T ss_pred CCEEEEEecCHH-HHHHhCCEEEEEeCCEEEeecCHHHhc
Confidence 778888777554 677889999999999999999988764
|
MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). |
| >PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.1e-18 Score=197.00 Aligned_cols=117 Identities=20% Similarity=0.263 Sum_probs=101.4
Q ss_pred hhhhhHHHHHHHHHhCCc-ccccccccCCcccccCccccchhhHHHHHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHh
Q 000979 40 GQEANVITDYYLKVLGLD-VCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNI 118 (1202)
Q Consensus 40 ~~~~~~~v~~il~~lgL~-~~~dT~VG~~~~~gLSGGQKqRvsIAraLv~~P~ILlLDEpTSGLDs~sa~~vv~~L~~~a 118 (1202)
.++..+.++++++.+||. +..|+.+ +.||||||||++|||||+.+|+||+|||||+|||+.+...+.+.++++.
T Consensus 118 ~~~~~~~~~~~l~~~gL~~~~~~~~~-----~~LSgGq~qrv~laraL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~ 192 (286)
T PRK13646 118 LDEVKNYAHRLLMDLGFSRDVMSQSP-----FQMSGGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQ 192 (286)
T ss_pred HHHHHHHHHHHHHHcCCChhhhhCCc-----ccCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHH
Confidence 345566788999999997 6777765 5799999999999999999999999999999999999999999999987
Q ss_pred HhCCCEEEEEecCCChHHHhhhcceEEecCCcEEEEcCcchHHH
Q 000979 119 HINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLE 162 (1202)
Q Consensus 119 ~~~~tTiIiaihQp~~s~~~~fD~IvvL~~G~vvy~G~~~el~~ 162 (1202)
.+.++||+++.|+.. .+.+.+|+|++|++|++++.|+++++.+
T Consensus 193 ~~~g~tvl~vtH~~~-~~~~~~dri~~l~~G~i~~~g~~~~~~~ 235 (286)
T PRK13646 193 TDENKTIILVSHDMN-EVARYADEVIVMKEGSIVSQTSPKELFK 235 (286)
T ss_pred HhCCCEEEEEecCHH-HHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 656788888777554 5778899999999999999999887653
|
|
| >PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.4e-18 Score=195.23 Aligned_cols=115 Identities=17% Similarity=0.247 Sum_probs=101.0
Q ss_pred hhhhhHHHHHHHHHhCCcccccccccCCcccccCccccchhhHHHHHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHhH
Q 000979 40 GQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIH 119 (1202)
Q Consensus 40 ~~~~~~~v~~il~~lgL~~~~dT~VG~~~~~gLSGGQKqRvsIAraLv~~P~ILlLDEpTSGLDs~sa~~vv~~L~~~a~ 119 (1202)
.++.++.++++++.+||++-.|..++ .||||||||++|||||+.+|+||+|||||+|||..+...+++.+++++.
T Consensus 114 ~~~~~~~~~~~l~~~gL~~~~~~~~~-----~LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~ 188 (279)
T PRK13650 114 HEEMKERVNEALELVGMQDFKEREPA-----RLSGGQKQRVAIAGAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRD 188 (279)
T ss_pred HHHHHHHHHHHHHHCCCHhHhhCCcc-----cCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHH
Confidence 34455678999999999987777764 7999999999999999999999999999999999999999999999876
Q ss_pred hCCCEEEEEecCCChHHHhhhcceEEecCCcEEEEcCcchHH
Q 000979 120 INSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVL 161 (1202)
Q Consensus 120 ~~~tTiIiaihQp~~s~~~~fD~IvvL~~G~vvy~G~~~el~ 161 (1202)
+.++|||++.|++.. + ..+|+|++|++|++++.|+.+++.
T Consensus 189 ~~g~tilivtH~~~~-~-~~~dri~~l~~G~i~~~g~~~~~~ 228 (279)
T PRK13650 189 DYQMTVISITHDLDE-V-ALSDRVLVMKNGQVESTSTPRELF 228 (279)
T ss_pred hcCCEEEEEecCHHH-H-HhCCEEEEEECCEEEEECCHHHHH
Confidence 558899888887653 4 679999999999999999988765
|
|
| >PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.4e-18 Score=195.64 Aligned_cols=116 Identities=25% Similarity=0.291 Sum_probs=100.8
Q ss_pred hhhhHHHHHHHHHhCCcccccccccCCcccccCccccchhhHHHHHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHhHh
Q 000979 41 QEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHI 120 (1202)
Q Consensus 41 ~~~~~~v~~il~~lgL~~~~dT~VG~~~~~gLSGGQKqRvsIAraLv~~P~ILlLDEpTSGLDs~sa~~vv~~L~~~a~~ 120 (1202)
++..+.++.+++.+||.+..|+.+ +.||||||||++|||||+.+|+||+|||||+|||+.+...+.+.|+++++.
T Consensus 116 ~~~~~~~~~~l~~~gL~~~~~~~~-----~~LS~G~~qrl~laraL~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~ 190 (283)
T PRK13636 116 DEVRKRVDNALKRTGIEHLKDKPT-----HCLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKE 190 (283)
T ss_pred HHHHHHHHHHHHHCCChhhhhCCc-----ccCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHh
Confidence 344566889999999998877776 479999999999999999999999999999999999999999999998765
Q ss_pred CCCEEEEEecCCChHHHhhhcceEEecCCcEEEEcCcchHHH
Q 000979 121 NSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLE 162 (1202)
Q Consensus 121 ~~tTiIiaihQp~~s~~~~fD~IvvL~~G~vvy~G~~~el~~ 162 (1202)
.++||+++.|+.. .+.+.+|+|++|++|++++.|+.+++..
T Consensus 191 ~g~tillvsH~~~-~~~~~~dri~~l~~G~i~~~g~~~~~~~ 231 (283)
T PRK13636 191 LGLTIIIATHDID-IVPLYCDNVFVMKEGRVILQGNPKEVFA 231 (283)
T ss_pred CCCEEEEEecCHH-HHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 4778887766544 4667899999999999999999988764
|
|
| >cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup | Back alignment and domain information |
|---|
Probab=99.77 E-value=7.9e-19 Score=189.88 Aligned_cols=108 Identities=23% Similarity=0.302 Sum_probs=94.9
Q ss_pred hhhHHHHHHHHHhCCcccccccccCCcccccCccccchhhHHHHHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHhHhC
Q 000979 42 EANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHIN 121 (1202)
Q Consensus 42 ~~~~~v~~il~~lgL~~~~dT~VG~~~~~gLSGGQKqRvsIAraLv~~P~ILlLDEpTSGLDs~sa~~vv~~L~~~a~~~ 121 (1202)
+.++.++++++.+||.+..|..++ .||||||||++|||||+++|+||+|||||+|||..+...+.+.+++++.+.
T Consensus 106 ~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgG~~qrl~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~ 180 (213)
T cd03259 106 EIRARVRELLELVGLEGLLNRYPH-----ELSGGQQQRVALARALAREPSLLLLDEPLSALDAKLREELREELKELQREL 180 (213)
T ss_pred HHHHHHHHHHHHcCChhhhhcChh-----hCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHc
Confidence 344567889999999988888774 699999999999999999999999999999999999999999999987555
Q ss_pred CCEEEEEecCCChHHHhhhcceEEecCCcEEEEc
Q 000979 122 SGTAVISLLQPAPETYDLFDDIILLSDGQIVYQG 155 (1202)
Q Consensus 122 ~tTiIiaihQp~~s~~~~fD~IvvL~~G~vvy~G 155 (1202)
++||+++.|.+. .+.+.+|+|++|++|++++.|
T Consensus 181 ~~tii~~sH~~~-~~~~~~d~v~~l~~G~i~~~g 213 (213)
T cd03259 181 GITTIYVTHDQE-EALALADRIAVMNEGRIVQVG 213 (213)
T ss_pred CCEEEEEecCHH-HHHHhcCEEEEEECCEEEecC
Confidence 788888777554 677889999999999999876
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.76 E-value=1e-18 Score=201.66 Aligned_cols=118 Identities=25% Similarity=0.274 Sum_probs=104.3
Q ss_pred hhhhhhHHHHHHHHHhCCcccccccccCCcccccCccccchhhHHHHHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHh
Q 000979 39 EGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNI 118 (1202)
Q Consensus 39 ~~~~~~~~v~~il~~lgL~~~~dT~VG~~~~~gLSGGQKqRvsIAraLv~~P~ILlLDEpTSGLDs~sa~~vv~~L~~~a 118 (1202)
...+.++.++++++.+||++..|..++ +|||||||||+|||||+.+|+||+|||||||||+.+..++++.|+++.
T Consensus 137 ~~~~~~~~a~e~le~vgL~~~~~~~~~-----~LSgGq~QRV~LARALa~~P~ILLlDEPts~LD~~~r~~l~~~L~~l~ 211 (382)
T TIGR03415 137 PEAERRKRVDEQLELVGLAQWADKKPG-----ELSGGMQQRVGLARAFAMDADILLMDEPFSALDPLIRTQLQDELLELQ 211 (382)
T ss_pred CHHHHHHHHHHHHHHcCCchhhcCChh-----hCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHH
Confidence 345556678899999999998888774 799999999999999999999999999999999999999999999987
Q ss_pred HhCCCEEEEEecCCChHHHhhhcceEEecCCcEEEEcCcchHHH
Q 000979 119 HINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLE 162 (1202)
Q Consensus 119 ~~~~tTiIiaihQp~~s~~~~fD~IvvL~~G~vvy~G~~~el~~ 162 (1202)
.+.++|||+++|... ++.+++|+|++|.+|++++.|+++++..
T Consensus 212 ~~~~~TII~iTHdl~-e~~~l~DrI~vl~~G~iv~~g~~~ei~~ 254 (382)
T TIGR03415 212 AKLNKTIIFVSHDLD-EALKIGNRIAIMEGGRIIQHGTPEEIVL 254 (382)
T ss_pred HhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEecCHHHHhh
Confidence 655788888777554 6789999999999999999999998863
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines. |
| >PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.5e-18 Score=194.47 Aligned_cols=112 Identities=21% Similarity=0.243 Sum_probs=98.0
Q ss_pred hhhHHHHHHHHHhCCcccccccccCCcccccCccccchhhHHHHHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHhHhC
Q 000979 42 EANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHIN 121 (1202)
Q Consensus 42 ~~~~~v~~il~~lgL~~~~dT~VG~~~~~gLSGGQKqRvsIAraLv~~P~ILlLDEpTSGLDs~sa~~vv~~L~~~a~~~ 121 (1202)
+.++.++.+++.+||++..|..++ .||||||||++|||||+++|++|+|||||+|||+.+...+.+.+++++. .
T Consensus 114 ~~~~~~~~~l~~~~L~~~~~~~~~-----~LSgG~~qrv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~ 187 (274)
T PRK13647 114 EVERRVEEALKAVRMWDFRDKPPY-----HLSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHN-Q 187 (274)
T ss_pred HHHHHHHHHHHHCCCHHHhcCChh-----hCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHH-C
Confidence 445568889999999988888774 7999999999999999999999999999999999999999999999865 4
Q ss_pred CCEEEEEecCCChHHHhhhcceEEecCCcEEEEcCcchH
Q 000979 122 SGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELV 160 (1202)
Q Consensus 122 ~tTiIiaihQp~~s~~~~fD~IvvL~~G~vvy~G~~~el 160 (1202)
++||+++.|.+. .+.+.+|+|++|++|++++.|+++++
T Consensus 188 g~tili~tH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~ 225 (274)
T PRK13647 188 GKTVIVATHDVD-LAAEWADQVIVLKEGRVLAEGDKSLL 225 (274)
T ss_pred CCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEECCHHHh
Confidence 778887766543 56688999999999999999998654
|
|
| >cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms | Back alignment and domain information |
|---|
Probab=99.76 E-value=6.5e-18 Score=175.70 Aligned_cols=76 Identities=16% Similarity=0.188 Sum_probs=69.5
Q ss_pred CCHHHHHHHHHHHHHh----hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEec
Q 000979 756 LSTEQRKRLTIAVELV----ANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKR 831 (1202)
Q Consensus 756 LSgGqrqRv~ia~aL~----~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~ 831 (1202)
||||||||++||++|+ .+|+++++||||++||+..+..+.+.|++++++|.|+|+++|+++ ..+.+|+++.+.+
T Consensus 95 LS~Ge~~r~~Laral~~~~~~~p~llilDEp~~~LD~~~~~~i~~~L~~~~~~g~tiIiiSH~~~--~~~~adrvi~i~~ 172 (178)
T cd03239 95 LSGGEKSLSALALIFALQEIKPSPFYVLDEIDAALDPTNRRRVSDMIKEMAKHTSQFIVITLKKE--MFENADKLIGVLF 172 (178)
T ss_pred CCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEECCHH--HHhhCCeEEEEEE
Confidence 9999999999999996 699999999999999999999999999998777899999999974 5678999999986
Q ss_pred CC
Q 000979 832 GG 833 (1202)
Q Consensus 832 gG 833 (1202)
.|
T Consensus 173 ~~ 174 (178)
T cd03239 173 VH 174 (178)
T ss_pred eC
Confidence 43
|
SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression. |
| >TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Probab=99.76 E-value=7.3e-19 Score=192.07 Aligned_cols=113 Identities=26% Similarity=0.280 Sum_probs=99.0
Q ss_pred hhhHHHHHHHHHhCCcccccccccCCcccccCccccchhhHHHHHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHhHhC
Q 000979 42 EANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHIN 121 (1202)
Q Consensus 42 ~~~~~v~~il~~lgL~~~~dT~VG~~~~~gLSGGQKqRvsIAraLv~~P~ILlLDEpTSGLDs~sa~~vv~~L~~~a~~~ 121 (1202)
+.++.++.+++.+||++..|+.++ .||||||||++|||+|+.+|++|+|||||+|||+.+...+.+.|++++++.
T Consensus 90 ~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~~ 164 (230)
T TIGR01184 90 ERRAIVEEHIALVGLTEAADKRPG-----QLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEELMQIWEEH 164 (230)
T ss_pred HHHHHHHHHHHHcCCHHHHcCChh-----hCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhc
Confidence 445567889999999988888764 799999999999999999999999999999999999999999999877655
Q ss_pred CCEEEEEecCCChHHHhhhcceEEecCCcEEEEcCcchH
Q 000979 122 SGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELV 160 (1202)
Q Consensus 122 ~tTiIiaihQp~~s~~~~fD~IvvL~~G~vvy~G~~~el 160 (1202)
++|||++.|++. ++.+.+|+|++|++|++++.|+..++
T Consensus 165 ~~tii~~sH~~~-~~~~~~d~v~~l~~G~i~~~~~~~~~ 202 (230)
T TIGR01184 165 RVTVLMVTHDVD-EALLLSDRVVMLTNGPAANIGQILEV 202 (230)
T ss_pred CCEEEEEeCCHH-HHHHhcCEEEEEeCCcEecccCceec
Confidence 788888877654 67788999999999999999976654
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase. |
| >PRK10070 glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.1e-18 Score=202.97 Aligned_cols=116 Identities=22% Similarity=0.265 Sum_probs=102.5
Q ss_pred hhhhHHHHHHHHHhCCcccccccccCCcccccCccccchhhHHHHHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHhHh
Q 000979 41 QEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHI 120 (1202)
Q Consensus 41 ~~~~~~v~~il~~lgL~~~~dT~VG~~~~~gLSGGQKqRvsIAraLv~~P~ILlLDEpTSGLDs~sa~~vv~~L~~~a~~ 120 (1202)
++.++.++++++.+||.+..|..+ +.||||||||++|||||+.+|+||+|||||||||+.+...+++.|+++.++
T Consensus 139 ~~~~~~~~e~L~~~gL~~~~~~~~-----~~LSgGq~QRv~LArAL~~~P~iLLLDEPts~LD~~~r~~l~~~L~~l~~~ 213 (400)
T PRK10070 139 EERREKALDALRQVGLENYAHSYP-----DELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAK 213 (400)
T ss_pred HHHHHHHHHHHHHcCCChhhhcCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHH
Confidence 445567888999999998888776 479999999999999999999999999999999999999999999998655
Q ss_pred CCCEEEEEecCCChHHHhhhcceEEecCCcEEEEcCcchHHH
Q 000979 121 NSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLE 162 (1202)
Q Consensus 121 ~~tTiIiaihQp~~s~~~~fD~IvvL~~G~vvy~G~~~el~~ 162 (1202)
.++|||++.|.+. ++.+.+|+|++|++|++++.|+++++..
T Consensus 214 ~g~TIIivTHd~~-~~~~~~Dri~vL~~G~i~~~g~~~~l~~ 254 (400)
T PRK10070 214 HQRTIVFISHDLD-EAMRIGDRIAIMQNGEVVQVGTPDEILN 254 (400)
T ss_pred CCCeEEEEECCHH-HHHHhCCEEEEEECCEEEecCCHHHHHh
Confidence 6788888877554 6788999999999999999999988753
|
|
| >cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient | Back alignment and domain information |
|---|
Probab=99.76 E-value=8.3e-19 Score=191.67 Aligned_cols=112 Identities=22% Similarity=0.268 Sum_probs=96.7
Q ss_pred hhHHHHHHHHHhCCcccccccccCCcccccCccccchhhHHHHHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHhHhCC
Q 000979 43 ANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINS 122 (1202)
Q Consensus 43 ~~~~v~~il~~lgL~~~~dT~VG~~~~~gLSGGQKqRvsIAraLv~~P~ILlLDEpTSGLDs~sa~~vv~~L~~~a~~~~ 122 (1202)
.++.++++++.+||.+..+..+. ..+||||||||++|||||+.+|++|+|||||+|||..++..+.+.|+++++ +
T Consensus 116 ~~~~~~~~l~~~~l~~~~~~~~~---~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~- 190 (227)
T cd03260 116 LDERVEEALRKAALWDEVKDRLH---ALGLSGGQQQRLCLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKK-E- 190 (227)
T ss_pred HHHHHHHHHHHcCCChHHhccCC---cccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhh-C-
Confidence 34567889999999987777641 257999999999999999999999999999999999999999999999764 4
Q ss_pred CEEEEEecCCChHHHhhhcceEEecCCcEEEEcCcchH
Q 000979 123 GTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELV 160 (1202)
Q Consensus 123 tTiIiaihQp~~s~~~~fD~IvvL~~G~vvy~G~~~el 160 (1202)
+|+|++.|++. .+.+.+|+|++|++|++++.|+++++
T Consensus 191 ~tii~~sH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~ 227 (227)
T cd03260 191 YTIVIVTHNMQ-QAARVADRTAFLLNGRLVEFGPTEQI 227 (227)
T ss_pred cEEEEEeccHH-HHHHhCCEEEEEeCCEEEEecCcccC
Confidence 78887777554 67788999999999999999998753
|
The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). |
| >COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.8e-18 Score=183.65 Aligned_cols=135 Identities=23% Similarity=0.254 Sum_probs=120.9
Q ss_pred CCCCCCCHH----HHHHHhhhhhhhhhHHHHHHHHHhCCcccccccccCCcccccCccccchhhHHHHHhcCCeEeeeeC
Q 000979 22 GIKPDPDID----VYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDE 97 (1202)
Q Consensus 22 ~~~~~~~~~----~~~~~~~~~~~~~~~~v~~il~~lgL~~~~dT~VG~~~~~gLSGGQKqRvsIAraLv~~P~ILlLDE 97 (1202)
++.|+..+. .=++...+.++|++++..+.|+..||+.-+|.+.. +||||+||||-+||||..+|+||++||
T Consensus 116 aLlPhrtVl~Nv~fGLev~Gv~~~er~~~a~~~l~~VgL~~~~~~yp~-----eLSGGMqQRVGLARAla~~~~IlLMDE 190 (386)
T COG4175 116 ALLPHRTVLENVAFGLEVQGVPKAEREERALEALELVGLEGYADKYPN-----ELSGGMQQRVGLARALANDPDILLMDE 190 (386)
T ss_pred ccccchhHhhhhhcceeecCCCHHHHHHHHHHHHHHcCchhhhhcCcc-----cccchHHHHHHHHHHHccCCCEEEecC
Confidence 677775554 33455788889999999999999999999999874 899999999999999999999999999
Q ss_pred CCccccHHHHHHHHHHHHHHhHhCCCEEEEEecCCChHHHhhhcceEEecCCcEEEEcCcchHHH
Q 000979 98 ISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLE 162 (1202)
Q Consensus 98 pTSGLDs~sa~~vv~~L~~~a~~~~tTiIiaihQp~~s~~~~fD~IvvL~~G~vvy~G~~~el~~ 162 (1202)
|-||||+--..+.++.|.++-++-++|||... |--.|.++..|||.+|.+|++|..|+++|.+.
T Consensus 191 aFSALDPLIR~~mQdeLl~Lq~~l~KTIvFit-HDLdEAlriG~rIaimkdG~ivQ~Gtp~eIl~ 254 (386)
T COG4175 191 AFSALDPLIRTEMQDELLELQAKLKKTIVFIT-HDLDEALRIGDRIAIMKDGEIVQVGTPEEILL 254 (386)
T ss_pred chhhcChHHHHHHHHHHHHHHHHhCCeEEEEe-cCHHHHHhccceEEEecCCeEEEeCCHHHHHc
Confidence 99999999999999999998877778888754 48889999999999999999999999999983
|
|
| >TIGR02770 nickel_nikD nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.1e-18 Score=190.92 Aligned_cols=114 Identities=20% Similarity=0.241 Sum_probs=98.1
Q ss_pred hhhHHHHHHHHHhCCccc---ccccccCCcccccCccccchhhHHHHHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHh
Q 000979 42 EANVITDYYLKVLGLDVC---ADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNI 118 (1202)
Q Consensus 42 ~~~~~v~~il~~lgL~~~---~dT~VG~~~~~gLSGGQKqRvsIAraLv~~P~ILlLDEpTSGLDs~sa~~vv~~L~~~a 118 (1202)
+.++.++++++.+||++. .+.. .+.|||||||||+|||+|+++|+||+|||||+|||..+...+.+.+++++
T Consensus 98 ~~~~~~~~~l~~~~l~~~~~~~~~~-----~~~LS~G~~qrv~laral~~~p~vllLDEPt~~LD~~~~~~l~~~l~~~~ 172 (230)
T TIGR02770 98 QARALILEALEAVGLPDPEEVLKKY-----PFQLSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQARVLKLLRELR 172 (230)
T ss_pred HHHHHHHHHHHHcCCCchHHHHhCC-----hhhcCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHH
Confidence 334568889999999843 3444 45799999999999999999999999999999999999999999999876
Q ss_pred HhCCCEEEEEecCCChHHHhhhcceEEecCCcEEEEcCcchHH
Q 000979 119 HINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVL 161 (1202)
Q Consensus 119 ~~~~tTiIiaihQp~~s~~~~fD~IvvL~~G~vvy~G~~~el~ 161 (1202)
.+.++|||++.|++. ++.+.+|+|++|++|++++.|+++++.
T Consensus 173 ~~~~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~~ 214 (230)
T TIGR02770 173 QLFGTGILLITHDLG-VVARIADEVAVMDDGRIVERGTVKEIF 214 (230)
T ss_pred HhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 545788888877665 677889999999999999999988875
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous. |
| >cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.1e-18 Score=191.44 Aligned_cols=113 Identities=18% Similarity=0.262 Sum_probs=99.9
Q ss_pred hhhHHHHHHHHHhCCcccccccccCCcccccCccccchhhHHHHHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHhHhC
Q 000979 42 EANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHIN 121 (1202)
Q Consensus 42 ~~~~~v~~il~~lgL~~~~dT~VG~~~~~gLSGGQKqRvsIAraLv~~P~ILlLDEpTSGLDs~sa~~vv~~L~~~a~~~ 121 (1202)
+.++.++.+++.+||++..++.+ +.||||||||++|||||+.+|++|+|||||+|||..+...+.+.|+++++ .
T Consensus 109 ~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~-~ 182 (232)
T cd03218 109 EREEKLEELLEEFHITHLRKSKA-----SSLSGGERRRVEIARALATNPKFLLLDEPFAGVDPIAVQDIQKIIKILKD-R 182 (232)
T ss_pred HHHHHHHHHHHHcCChhhhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHH-C
Confidence 34556788999999998888776 47999999999999999999999999999999999999999999998764 5
Q ss_pred CCEEEEEecCCChHHHhhhcceEEecCCcEEEEcCcchHH
Q 000979 122 SGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVL 161 (1202)
Q Consensus 122 ~tTiIiaihQp~~s~~~~fD~IvvL~~G~vvy~G~~~el~ 161 (1202)
++|+|++.|++. ++.+.+|+|++|++|++++.|+++++.
T Consensus 183 ~~tii~~sH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~~ 221 (232)
T cd03218 183 GIGVLITDHNVR-ETLSITDRAYIIYEGKVLAEGTPEEIA 221 (232)
T ss_pred CCEEEEEeCCHH-HHHHhCCEEEEEECCeEEEEeCHHHhh
Confidence 778888777555 888999999999999999999988764
|
The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. |
| >COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.1e-18 Score=192.98 Aligned_cols=169 Identities=26% Similarity=0.372 Sum_probs=121.8
Q ss_pred EEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCCc------------ccccc----------eEEEee
Q 000979 638 AFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ------------ETFAR----------ISGYCE 695 (1202)
Q Consensus 638 ~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~------------~~~~~----------~~~~v~ 695 (1202)
..++|++++|+||||-||||.+|+|+|...+. -|+ .++.|-.+ ..+++ ..-||.
T Consensus 96 ~pr~G~V~GilG~NGiGKsTalkILaGel~PN--LG~--~~~pp~wdeVi~~FrGtELq~YF~~l~~g~~r~v~K~QYVd 171 (591)
T COG1245 96 TPRPGKVVGILGPNGIGKSTALKILAGELKPN--LGR--YEDPPSWDEVIKRFRGTELQNYFKKLYEGELRAVHKPQYVD 171 (591)
T ss_pred CCCCCcEEEEEcCCCccHHHHHHHHhCccccC--CCC--CCCCCCHHHHHHHhhhhHHHHHHHHHHcCCcceecchHHHH
Confidence 45799999999999999999999999976532 221 11111000 00000 111221
Q ss_pred cCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCC
Q 000979 696 QNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPS 775 (1202)
Q Consensus 696 q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~ 775 (1202)
--|... .-||.|-|.-. ..+-..+++++.++|.+..|+-+ +.|||||-||++||.+++++.+
T Consensus 172 ~iPk~~-KG~v~elLk~~------------de~g~~devve~l~L~nvl~r~v-----~~LSGGELQr~aIaa~l~rdAD 233 (591)
T COG1245 172 LIPKVV-KGKVGELLKKV------------DERGKFDEVVERLGLENVLDRDV-----SELSGGELQRVAIAAALLRDAD 233 (591)
T ss_pred HHHHHh-cchHHHHHHhh------------hhcCcHHHHHHHhcchhhhhhhh-----hhcCchHHHHHHHHHHHhccCC
Confidence 111111 12566644311 11124688999999999988874 5799999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHH-hcceEEEEe
Q 000979 776 IIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFE-AFDELFLMK 830 (1202)
Q Consensus 776 illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~-~~d~v~~l~ 830 (1202)
++++|||||-||...+..+.+.++++++.+++||++.||+. +.+ +.|-+.++.
T Consensus 234 vY~FDEpsSyLDi~qRl~~ar~Irel~~~~k~ViVVEHDLa--vLD~lsD~vhI~Y 287 (591)
T COG1245 234 VYFFDEPSSYLDIRQRLNAARVIRELAEDGKYVIVVEHDLA--VLDYLSDFVHILY 287 (591)
T ss_pred EEEEcCCcccccHHHHHHHHHHHHHHhccCCeEEEEechHH--HHHHhhheeEEEe
Confidence 99999999999999999999999999988999999999975 444 467777775
|
|
| >cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.2e-18 Score=188.61 Aligned_cols=109 Identities=25% Similarity=0.318 Sum_probs=96.5
Q ss_pred hhhhHHHHHHHHHhCCcccccccccCCcccccCccccchhhHHHHHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHhHh
Q 000979 41 QEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHI 120 (1202)
Q Consensus 41 ~~~~~~v~~il~~lgL~~~~dT~VG~~~~~gLSGGQKqRvsIAraLv~~P~ILlLDEpTSGLDs~sa~~vv~~L~~~a~~ 120 (1202)
++.++.++++++.+||.+..|..++ .||||||||++|||+|+.+|+|++|||||+|||..+...+.+.+++++.+
T Consensus 105 ~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qr~~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~ 179 (213)
T cd03301 105 DEIDERVREVAELLQIEHLLDRKPK-----QLSGGQRQRVALGRAIVREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQR 179 (213)
T ss_pred HHHHHHHHHHHHHcCCHHHHhCChh-----hCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHH
Confidence 3445567889999999988888774 79999999999999999999999999999999999999999999998765
Q ss_pred CCCEEEEEecCCChHHHhhhcceEEecCCcEEEEc
Q 000979 121 NSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQG 155 (1202)
Q Consensus 121 ~~tTiIiaihQp~~s~~~~fD~IvvL~~G~vvy~G 155 (1202)
.++|+|++.|++. ++.+.+|+|++|.+|+++++|
T Consensus 180 ~~~tvi~~sH~~~-~~~~~~d~i~~l~~g~~~~~g 213 (213)
T cd03301 180 LGTTTIYVTHDQV-EAMTMADRIAVMNDGQIQQIG 213 (213)
T ss_pred cCCEEEEEeCCHH-HHHHhcCeEEEEECCEEEecC
Confidence 5788888888664 677889999999999999987
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. |
| >cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.2e-18 Score=189.53 Aligned_cols=111 Identities=24% Similarity=0.271 Sum_probs=97.3
Q ss_pred hhhHHHHHHHHHhCCcccccccccCCcccccCccccchhhHHHHHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHhHhC
Q 000979 42 EANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHIN 121 (1202)
Q Consensus 42 ~~~~~v~~il~~lgL~~~~dT~VG~~~~~gLSGGQKqRvsIAraLv~~P~ILlLDEpTSGLDs~sa~~vv~~L~~~a~~~ 121 (1202)
+..+.++.+++.+||.+..+..++ .||||||||++|||||+++|++|+|||||+|||..+...+.+.++++..+.
T Consensus 107 ~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~ 181 (220)
T cd03293 107 EARERAEELLELVGLSGFENAYPH-----QLSGGMRQRVALARALAVDPDVLLLDEPFSALDALTREQLQEELLDIWRET 181 (220)
T ss_pred HHHHHHHHHHHHcCChhhhhCCcc-----cCCHHHHHHHHHHHHHHcCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHc
Confidence 344567889999999988887764 799999999999999999999999999999999999999999999876555
Q ss_pred CCEEEEEecCCChHHHhhhcceEEec--CCcEEEEcCcc
Q 000979 122 SGTAVISLLQPAPETYDLFDDIILLS--DGQIVYQGPRE 158 (1202)
Q Consensus 122 ~tTiIiaihQp~~s~~~~fD~IvvL~--~G~vvy~G~~~ 158 (1202)
++|||++.|++. ++.+.+|+|++|+ +|++++.++.+
T Consensus 182 ~~tiii~sH~~~-~~~~~~d~i~~l~~~~G~i~~~~~~~ 219 (220)
T cd03293 182 GKTVLLVTHDID-EAVFLADRVVVLSARPGRIVAEVEVD 219 (220)
T ss_pred CCEEEEEecCHH-HHHHhCCEEEEEECCCCEEEEEEEec
Confidence 788888877654 6778899999999 79999998864
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.2e-18 Score=191.35 Aligned_cols=114 Identities=27% Similarity=0.322 Sum_probs=100.3
Q ss_pred hhhHHHHHHHHHhCCcccccccccCCcccccCccccchhhHHHHHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHhHhC
Q 000979 42 EANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHIN 121 (1202)
Q Consensus 42 ~~~~~v~~il~~lgL~~~~dT~VG~~~~~gLSGGQKqRvsIAraLv~~P~ILlLDEpTSGLDs~sa~~vv~~L~~~a~~~ 121 (1202)
+..+.++++++.+||++..|..+ ..||||||||++|||+|+.+|++|+|||||+|||..+...+.+.+++++++.
T Consensus 116 ~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~ 190 (233)
T cd03258 116 EIEERVLELLELVGLEDKADAYP-----AQLSGGQKQRVGIARALANNPKVLLCDEATSALDPETTQSILALLRDINREL 190 (233)
T ss_pred HHHHHHHHHHHHCCChhhhhcCh-----hhCCHHHHHHHHHHHHHhcCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHc
Confidence 34556788999999998888776 4799999999999999999999999999999999999999999999977655
Q ss_pred CCEEEEEecCCChHHHhhhcceEEecCCcEEEEcCcchHH
Q 000979 122 SGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVL 161 (1202)
Q Consensus 122 ~tTiIiaihQp~~s~~~~fD~IvvL~~G~vvy~G~~~el~ 161 (1202)
++|+|++.|++. .+.+.+|++++|++|++++.|+++++.
T Consensus 191 ~~tvii~sH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~~ 229 (233)
T cd03258 191 GLTIVLITHEME-VVKRICDRVAVMEKGEVVEEGTVEEVF 229 (233)
T ss_pred CCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEecCHHHHh
Confidence 788888877654 667889999999999999999987764
|
Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13633 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.8e-18 Score=194.71 Aligned_cols=116 Identities=22% Similarity=0.263 Sum_probs=102.2
Q ss_pred hhhhhHHHHHHHHHhCCcccccccccCCcccccCccccchhhHHHHHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHhH
Q 000979 40 GQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIH 119 (1202)
Q Consensus 40 ~~~~~~~v~~il~~lgL~~~~dT~VG~~~~~gLSGGQKqRvsIAraLv~~P~ILlLDEpTSGLDs~sa~~vv~~L~~~a~ 119 (1202)
..+.++.++.+++.+||++..++.++ .||||||||++|||+|+++|++|+|||||+|||..+...+.+.|+++++
T Consensus 118 ~~~~~~~~~~~l~~~gL~~~~~~~~~-----~LS~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~ 192 (280)
T PRK13633 118 PEEIRERVDESLKKVGMYEYRRHAPH-----LLSGGQKQRVAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNK 192 (280)
T ss_pred HHHHHHHHHHHHHHCCCHhHhhCCcc-----cCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH
Confidence 34456678999999999998888874 7999999999999999999999999999999999999999999998865
Q ss_pred hCCCEEEEEecCCChHHHhhhcceEEecCCcEEEEcCcchHHH
Q 000979 120 INSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLE 162 (1202)
Q Consensus 120 ~~~tTiIiaihQp~~s~~~~fD~IvvL~~G~vvy~G~~~el~~ 162 (1202)
+.++||+++.|++.. + ..+|++++|++|++++.|+++++..
T Consensus 193 ~~g~tillvtH~~~~-~-~~~d~v~~l~~G~i~~~g~~~~~~~ 233 (280)
T PRK13633 193 KYGITIILITHYMEE-A-VEADRIIVMDSGKVVMEGTPKEIFK 233 (280)
T ss_pred hcCCEEEEEecChHH-H-hcCCEEEEEECCEEEEecCHHHHhc
Confidence 557888888887774 3 4599999999999999999988754
|
|
| >TIGR01192 chvA glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.76 E-value=8.5e-19 Score=217.52 Aligned_cols=103 Identities=23% Similarity=0.333 Sum_probs=90.5
Q ss_pred CCcccccccccCCcccccCccccchhhHHHHHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHhHhCCCEEEEEecCCCh
Q 000979 55 GLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAP 134 (1202)
Q Consensus 55 gL~~~~dT~VG~~~~~gLSGGQKqRvsIAraLv~~P~ILlLDEpTSGLDs~sa~~vv~~L~~~a~~~~tTiIiaihQp~~ 134 (1202)
.|++..||.+| +.+..||||||||++|||||+++|+||+|||||||||..++..+.+.|++.. +++|+|+.. |+.
T Consensus 456 ~l~~g~~t~~~-~~~~~LSgGq~qrl~lARall~~p~ililDEpts~LD~~~~~~i~~~l~~~~--~~~tvI~is--H~~ 530 (585)
T TIGR01192 456 KRSNGYDTLVG-ERGNRLSGGERQRLAIARAILKNAPILVLDEATSALDVETEARVKNAIDALR--KNRTTFIIA--HRL 530 (585)
T ss_pred hccccccchhc-CCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHh--CCCEEEEEE--cCh
Confidence 56778899999 5678899999999999999999999999999999999999999999998763 345555544 455
Q ss_pred HHHhhhcceEEecCCcEEEEcCcchHHH
Q 000979 135 ETYDLFDDIILLSDGQIVYQGPRELVLE 162 (1202)
Q Consensus 135 s~~~~fD~IvvL~~G~vvy~G~~~el~~ 162 (1202)
++.+.+|+|++|++|++++.|+|+++++
T Consensus 531 ~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 558 (585)
T TIGR01192 531 STVRNADLVLFLDQGRLIEKGSFQELIQ 558 (585)
T ss_pred HHHHcCCEEEEEECCEEEEECCHHHHHH
Confidence 7789999999999999999999999975
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related. |
| >PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.5e-18 Score=195.04 Aligned_cols=116 Identities=25% Similarity=0.320 Sum_probs=102.3
Q ss_pred hhhhHHHHHHHHHhCCcccccccccCCcccccCccccchhhHHHHHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHhHh
Q 000979 41 QEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHI 120 (1202)
Q Consensus 41 ~~~~~~v~~il~~lgL~~~~dT~VG~~~~~gLSGGQKqRvsIAraLv~~P~ILlLDEpTSGLDs~sa~~vv~~L~~~a~~ 120 (1202)
++.++.++++++.+||.+..++.++ .||||||||++|||||+.+|++|+|||||+|||..++..+.+.++++..+
T Consensus 112 ~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~Gq~qrl~laraL~~~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~ 186 (277)
T PRK13652 112 ETVAHRVSSALHMLGLEELRDRVPH-----HLSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPET 186 (277)
T ss_pred HHHHHHHHHHHHHCCChhHhcCCcc-----cCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh
Confidence 3445568899999999988888774 79999999999999999999999999999999999999999999998765
Q ss_pred CCCEEEEEecCCChHHHhhhcceEEecCCcEEEEcCcchHHH
Q 000979 121 NSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLE 162 (1202)
Q Consensus 121 ~~tTiIiaihQp~~s~~~~fD~IvvL~~G~vvy~G~~~el~~ 162 (1202)
.++||+++.|++. ++.+.+|+|++|++|++++.|+++++.+
T Consensus 187 ~g~tvli~tH~~~-~~~~~~drv~~l~~G~i~~~g~~~~~~~ 227 (277)
T PRK13652 187 YGMTVIFSTHQLD-LVPEMADYIYVMDKGRIVAYGTVEEIFL 227 (277)
T ss_pred cCCEEEEEecCHH-HHHHhCCEEEEEECCeEEEECCHHHHhc
Confidence 5788888877655 6778999999999999999999988863
|
|
| >TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.8e-18 Score=190.10 Aligned_cols=114 Identities=23% Similarity=0.299 Sum_probs=99.4
Q ss_pred hhhHHHHHHHHHhCCcccccccccCCcccccCccccchhhHHHHHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHhHhC
Q 000979 42 EANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHIN 121 (1202)
Q Consensus 42 ~~~~~v~~il~~lgL~~~~dT~VG~~~~~gLSGGQKqRvsIAraLv~~P~ILlLDEpTSGLDs~sa~~vv~~L~~~a~~~ 121 (1202)
+..+.++++++.+||++..|+.++ .||||||||++|||||+++|+|++|||||+|||..+...+.+.|++++++.
T Consensus 108 ~~~~~~~~~l~~~gl~~~~~~~~~-----~LS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~ 182 (236)
T TIGR03864 108 EARERIAALLARLGLAERADDKVR-----ELNGGHRRRVEIARALLHRPALLLLDEPTVGLDPASRAAIVAHVRALCRDQ 182 (236)
T ss_pred HHHHHHHHHHHHcCChhhhcCChh-----hCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhC
Confidence 345567889999999988887764 799999999999999999999999999999999999999999999987545
Q ss_pred CCEEEEEecCCChHHHhhhcceEEecCCcEEEEcCcchHHH
Q 000979 122 SGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLE 162 (1202)
Q Consensus 122 ~tTiIiaihQp~~s~~~~fD~IvvL~~G~vvy~G~~~el~~ 162 (1202)
++|+|++.|.+..- ..+|+|++|.+|++++.|+++++.+
T Consensus 183 ~~tiii~sH~~~~~--~~~d~i~~l~~G~i~~~~~~~~~~~ 221 (236)
T TIGR03864 183 GLSVLWATHLVDEI--EADDRLVVLHRGRVLADGAAAELRG 221 (236)
T ss_pred CCEEEEEecChhhH--hhCCEEEEEeCCeEEEeCCHHHHHH
Confidence 78888887777643 4599999999999999999887764
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification. |
| >PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.3e-18 Score=199.64 Aligned_cols=114 Identities=18% Similarity=0.151 Sum_probs=96.4
Q ss_pred hhhHHHHHHHHHhCCccc---ccccccCCcccccCccccchhhHHHHHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHh
Q 000979 42 EANVITDYYLKVLGLDVC---ADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNI 118 (1202)
Q Consensus 42 ~~~~~v~~il~~lgL~~~---~dT~VG~~~~~gLSGGQKqRvsIAraLv~~P~ILlLDEpTSGLDs~sa~~vv~~L~~~a 118 (1202)
+.++.++++++.+||.+- .+... .+|||||||||+|||||+.+|+||+|||||||||..+..++.+.|+++.
T Consensus 131 ~~~~~~~~~L~~~gL~~~~~~~~~~p-----~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~ 205 (330)
T PRK15093 131 WRKRRAIELLHRVGIKDHKDAMRSFP-----YELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLN 205 (330)
T ss_pred HHHHHHHHHHHHCCCCChHHHHhCCc-----hhCCHHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHH
Confidence 345567889999999853 34444 5899999999999999999999999999999999999999999999987
Q ss_pred HhCCCEEEEEecCCChHHHhhhcceEEecCCcEEEEcCcchHH
Q 000979 119 HINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVL 161 (1202)
Q Consensus 119 ~~~~tTiIiaihQp~~s~~~~fD~IvvL~~G~vvy~G~~~el~ 161 (1202)
++.++|+|++.|.. ..+.+.+|+|++|.+|++++.|+.+++.
T Consensus 206 ~~~g~tii~itHdl-~~v~~~~dri~vm~~G~ive~g~~~~i~ 247 (330)
T PRK15093 206 QNNNTTILLISHDL-QMLSQWADKINVLYCGQTVETAPSKELV 247 (330)
T ss_pred HhcCCEEEEEECCH-HHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 65567777665543 3555789999999999999999988875
|
|
| >PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.3e-18 Score=202.46 Aligned_cols=113 Identities=24% Similarity=0.394 Sum_probs=101.1
Q ss_pred hhhHHHHHHHHHhCCcccccccccCCcccccCccccchhhHHHHHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHhHhC
Q 000979 42 EANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHIN 121 (1202)
Q Consensus 42 ~~~~~v~~il~~lgL~~~~dT~VG~~~~~gLSGGQKqRvsIAraLv~~P~ILlLDEpTSGLDs~sa~~vv~~L~~~a~~~ 121 (1202)
+.++.+++.++.+||.+-.|..+ ++||||||||++|||||+.+|+||+|||||+|||..+..++.+.|+++++ .
T Consensus 115 ~~~~~v~~~le~vgl~~~~~~~~-----~~LSgGerQRv~IArAL~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~-~ 188 (402)
T PRK09536 115 TDRAAVERAMERTGVAQFADRPV-----TSLSGGERQRVLLARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVD-D 188 (402)
T ss_pred HHHHHHHHHHHHcCCchhhcCCh-----hhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHh-c
Confidence 44567899999999999888877 47999999999999999999999999999999999999999999999875 5
Q ss_pred CCEEEEEecCCChHHHhhhcceEEecCCcEEEEcCcchHH
Q 000979 122 SGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVL 161 (1202)
Q Consensus 122 ~tTiIiaihQp~~s~~~~fD~IvvL~~G~vvy~G~~~el~ 161 (1202)
++|||+++|. ..++.+.+|+|++|++|++++.|++++++
T Consensus 189 g~TIIivsHd-l~~~~~~adrii~l~~G~iv~~G~~~ev~ 227 (402)
T PRK09536 189 GKTAVAAIHD-LDLAARYCDELVLLADGRVRAAGPPADVL 227 (402)
T ss_pred CCEEEEEECC-HHHHHHhCCEEEEEECCEEEEecCHHHHh
Confidence 7888887764 44777999999999999999999998865
|
|
| >PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=3e-18 Score=191.90 Aligned_cols=114 Identities=20% Similarity=0.264 Sum_probs=99.4
Q ss_pred hhhHHHHHHHHHhCCcccccccccCCcccccCccccchhhHHHHHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHhHhC
Q 000979 42 EANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHIN 121 (1202)
Q Consensus 42 ~~~~~v~~il~~lgL~~~~dT~VG~~~~~gLSGGQKqRvsIAraLv~~P~ILlLDEpTSGLDs~sa~~vv~~L~~~a~~~ 121 (1202)
+..+.++.+++.+||.+..|+.+ +.||||||||++|||||+.+|++|+|||||+|||+.+...+.+.|+++....
T Consensus 118 ~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~ 192 (269)
T PRK13648 118 EMHRRVSEALKQVDMLERADYEP-----NALSGGQKQRVAIAGVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEH 192 (269)
T ss_pred HHHHHHHHHHHHcCCchhhhCCc-----ccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhc
Confidence 34456788999999998777765 4799999999999999999999999999999999999999999999876545
Q ss_pred CCEEEEEecCCChHHHhhhcceEEecCCcEEEEcCcchHHH
Q 000979 122 SGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLE 162 (1202)
Q Consensus 122 ~tTiIiaihQp~~s~~~~fD~IvvL~~G~vvy~G~~~el~~ 162 (1202)
++|||++.|++. ++. .+|+|++|++|++++.|+++++.+
T Consensus 193 ~~tiiivtH~~~-~~~-~~d~i~~l~~G~i~~~g~~~~~~~ 231 (269)
T PRK13648 193 NITIISITHDLS-EAM-EADHVIVMNKGTVYKEGTPTEIFD 231 (269)
T ss_pred CCEEEEEecCch-HHh-cCCEEEEEECCEEEEecCHHHHhc
Confidence 789998888775 344 599999999999999999988753
|
|
| >cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.8e-18 Score=184.55 Aligned_cols=147 Identities=14% Similarity=0.127 Sum_probs=107.7
Q ss_pred eecceEEEeCCe-EEEEEcCCCCCHHHHHHHHh--------CCCCCceEEEEEEEcCccCCcccccceEEEeecCCCCCC
Q 000979 632 LNGVSGAFRPGV-LTALMGVSGAGKTTLMDVLA--------GRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSP 702 (1202)
Q Consensus 632 L~~vs~~i~~Ge-~~al~G~sGaGKSTLl~~l~--------g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~ 702 (1202)
.-++|+++.+|+ +++|.|||||||||||++|+ |...+ ... ...++|+.|.-..
T Consensus 17 ~~~~~~~i~~~~~~~~ltG~Ng~GKStll~~i~~~~~~~~~G~~vp--~~~--------------~~~~~~~~~~~~~-- 78 (200)
T cd03280 17 VVPLDIQLGENKRVLVITGPNAGGKTVTLKTLGLLTLMAQSGLPIP--AAE--------------GSSLPVFENIFAD-- 78 (200)
T ss_pred eEcceEEECCCceEEEEECCCCCChHHHHHHHHHHHHHHHcCCCcc--ccc--------------cccCcCccEEEEe--
Confidence 557999999995 89999999999999999997 32211 000 0012333332100
Q ss_pred CCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCC
Q 000979 703 FVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEP 782 (1202)
Q Consensus 703 ~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~illlDEP 782 (1202)
++..+..+. +.+.+|+||||++.|+++ +.+|+++++|||
T Consensus 79 -----------------------------------lg~~~~l~~-----~~s~fs~g~~~~~~i~~~-~~~p~llllDEp 117 (200)
T cd03280 79 -----------------------------------IGDEQSIEQ-----SLSTFSSHMKNIARILQH-ADPDSLVLLDEL 117 (200)
T ss_pred -----------------------------------cCchhhhhc-----CcchHHHHHHHHHHHHHh-CCCCcEEEEcCC
Confidence 011000111 124699999999999988 489999999999
Q ss_pred CCCCCHHHHHHHH-HHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCCEEEEEcC
Q 000979 783 TSGLDARAAAIVM-RTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGP 840 (1202)
Q Consensus 783 tsgLD~~~~~~v~-~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G~ 840 (1202)
|+|||+..+..+. ..++++.+.|.|+|++||+. ++.+.+|+++.|.+ |++.+.++
T Consensus 118 ~~glD~~~~~~i~~~~l~~l~~~~~~vi~~tH~~--~l~~~~d~~~~l~~-g~l~~~~~ 173 (200)
T cd03280 118 GSGTDPVEGAALAIAILEELLERGALVIATTHYG--ELKAYAYKREGVEN-ASMEFDPE 173 (200)
T ss_pred CCCCCHHHHHHHHHHHHHHHHhcCCEEEEECCHH--HHHHHHhcCCCeEE-EEEEEecC
Confidence 9999999999986 46788777799999999984 57899999999985 79988753
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a |
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() | |
| Query | 1202 | ||||
| 1oxx_K | 353 | Crystal Structure Of Glcv, The Abc-Atpase Of The Gl | 8e-11 | ||
| 1oxs_C | 353 | Crystal Structure Of Glcv, The Abc-Atpase Of The Gl | 1e-10 | ||
| 2pmk_A | 243 | Crystal Structures Of An Isolated Abc-Atpase In Com | 3e-10 | ||
| 2it1_A | 362 | Structure Of Ph0203 Protein From Pyrococcus Horikos | 3e-10 | ||
| 1mt0_A | 241 | Atp-Binding Domain Of Haemolysin B From Escherichia | 3e-10 | ||
| 2ff7_A | 247 | The Abc-Atpase Of The Abc-Transporter Hlyb In The A | 3e-10 | ||
| 4hlu_D | 268 | Structure Of The Ecfa-a' Heterodimer Bound To Adp L | 4e-10 | ||
| 3gfo_A | 275 | Structure Of Cbio1 From Clostridium Perfringens: Pa | 4e-10 | ||
| 3b5j_A | 243 | Crystal Structures Of The S504a Mutant Of An Isolat | 6e-10 | ||
| 2ffb_A | 247 | The Crystal Structure Of The Hlyb-Nbd E631q Mutant | 7e-10 | ||
| 1v43_A | 372 | Crystal Structure Of Atpase Subunit Of Abc Sugar Tr | 9e-10 | ||
| 1vci_A | 373 | Crystal Structure Of The Atp-binding Cassette Of Mu | 9e-10 | ||
| 2yyz_A | 359 | Crystal Structure Of Sugar Abc Transporter, Atp-Bin | 2e-09 | ||
| 1xef_A | 241 | Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DI | 4e-09 | ||
| 2ffa_A | 247 | Crystal Structure Of Abc-Atpase H662a Of The Abc-Tr | 4e-09 | ||
| 1z47_A | 355 | Structure Of The Atpase Subunit Cysa Of The Putativ | 9e-09 | ||
| 1l2t_A | 235 | Dimeric Structure Of Mj0796, A Bacterial Abc Transp | 1e-08 | ||
| 3g5u_A | 1284 | Structure Of P-Glycoprotein Reveals A Molecular Bas | 2e-08 | ||
| 3g60_A | 1284 | Structure Of P-Glycoprotein Reveals A Molecular Bas | 2e-08 | ||
| 3tif_A | 235 | Dimeric Structure Of A Post-Hydrolysis State Of The | 3e-08 | ||
| 1mv5_A | 243 | Crystal Structure Of Lmra Atp-Binding Domain Length | 5e-08 | ||
| 4f4c_A | 1321 | The Crystal Structure Of The Multi-Drug Transporter | 7e-08 | ||
| 4ayt_A | 595 | Structure Of The Human Mitochondrial Abc Transporte | 1e-07 | ||
| 3c41_J | 242 | Abc Protein Artp In Complex With Amp-PnpMG2+ Length | 1e-07 | ||
| 4ayw_A | 619 | Structure Of The Human Mitochondrial Abc Transporte | 1e-07 | ||
| 2olj_A | 263 | Abc Protein Artp In Complex With AdpMG2+ Length = 2 | 2e-07 | ||
| 1q12_A | 381 | Crystal Structure Of The Atp-bound E. Coli Malk Len | 3e-07 | ||
| 1q1b_A | 381 | Crystal Structure Of E. Coli Malk In The Nucleotide | 3e-07 | ||
| 1g29_1 | 372 | Malk Length = 372 | 6e-07 | ||
| 2r6g_A | 381 | The Crystal Structure Of The E. Coli Maltose Transp | 6e-07 | ||
| 2d3w_A | 248 | Crystal Structure Of Escherichia Coli Sufc, An Atpa | 6e-07 | ||
| 2zu0_C | 267 | Crystal Structure Of Sufc-Sufd Complex Involved In | 7e-07 | ||
| 2d62_A | 375 | Crystal Structure Of Multiple Sugar Binding Transpo | 1e-06 | ||
| 2ixf_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 1e-06 | ||
| 1f3o_A | 235 | Crystal Structure Of Mj0796 Atp-Binding Cassette Le | 2e-06 | ||
| 2hyd_A | 578 | Multidrug Abc Transporter Sav1866 Length = 578 | 3e-06 | ||
| 4dbl_C | 249 | Crystal Structure Of E159q Mutant Of Btucdf Length | 3e-06 | ||
| 3b5x_A | 582 | Crystal Structure Of Msba From Vibrio Cholerae Leng | 3e-06 | ||
| 2d2e_A | 250 | Crystal Structure Of Atypical Cytoplasmic Abc-Atpas | 4e-06 | ||
| 4fi3_C | 249 | Structure Of Vitamin B12 Transporter Btucd-F In A N | 4e-06 | ||
| 1vpl_A | 256 | Crystal Structure Of Abc Transporter Atp-binding Pr | 6e-06 | ||
| 1l7v_C | 249 | Bacterial Abc Transporter Involved In B12 Uptake Le | 7e-06 | ||
| 1g6h_A | 257 | Crystal Structure Of The Adp Conformation Of Mj1267 | 7e-06 | ||
| 1g9x_A | 257 | Characterization Of The Twinning Structure Of Mj126 | 8e-06 | ||
| 2qi9_C | 249 | Abc-Transporter Btucd In Complex With Its Periplasm | 9e-06 | ||
| 2pcj_A | 224 | Crystal Structure Of Abc Transporter (Aq_297) From | 1e-05 | ||
| 2nq2_C | 253 | An Inward-Facing Conformation Of A Putative Metal-C | 1e-05 | ||
| 1gaj_A | 257 | Crystal Structure Of A Nucleotide-Free Atp-Binding | 1e-05 | ||
| 3qf4_A | 587 | Crystal Structure Of A Heterodimeric Abc Transporte | 1e-05 | ||
| 2ghi_A | 260 | Crystal Structure Of Plasmodium Yoelii Multidrug Re | 1e-05 | ||
| 1yqt_A | 538 | Rnase-L Inhibitor Length = 538 | 1e-05 | ||
| 2ixe_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 2e-05 | ||
| 3tuj_C | 366 | Inward Facing Conformations Of The Metni Methionine | 2e-05 | ||
| 1b0u_A | 262 | Atp-Binding Subunit Of The Histidine Permease From | 2e-05 | ||
| 1jj7_A | 260 | Crystal Structure Of The C-Terminal Atpase Domain O | 2e-05 | ||
| 2ixg_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 3e-05 | ||
| 3ozx_A | 538 | Crystal Structure Of Abce1 Of Sulfolubus Solfataric | 5e-05 | ||
| 3ozx_A | 538 | Crystal Structure Of Abce1 Of Sulfolubus Solfataric | 8e-04 | ||
| 3fvq_A | 359 | Crystal Structure Of The Nucleotide Binding Domain | 5e-05 | ||
| 1ji0_A | 240 | Crystal Structure Analysis Of The Abc Transporter F | 6e-05 | ||
| 3d31_A | 348 | Modbc From Methanosarcina Acetivorans Length = 348 | 8e-05 | ||
| 2yz2_A | 266 | Crystal Structure Of The Abc Transporter In The Cob | 9e-05 | ||
| 4hlu_A | 268 | Structure Of The Ecfa-a' Heterodimer Bound To Adp L | 9e-05 | ||
| 3b5y_A | 582 | Crystal Structure Of Msba From Salmonella Typhimuri | 1e-04 | ||
| 3b5w_A | 582 | Crystal Structure Of Eschericia Coli Msba Length = | 1e-04 | ||
| 3dhw_C | 343 | Crystal Structure Of Methionine Importer Metni Leng | 1e-04 | ||
| 2onk_A | 240 | Abc Transporter Modbc In Complex With Its Binding P | 1e-04 | ||
| 3nh6_A | 306 | Nucleotide Binding Domain Of Human Abcb6 (Apo Struc | 1e-04 | ||
| 2ihy_A | 279 | Structure Of The Staphylococcus Aureus Putative Atp | 2e-04 | ||
| 3tui_C | 366 | Inward Facing Conformations Of The Metni Methionine | 2e-04 | ||
| 3bk7_A | 607 | Structure Of The Complete Abce1RNAASE-L Inhibitor P | 3e-04 | ||
| 4g1u_C | 266 | X-Ray Structure Of The Bacterial Heme Transporter H | 3e-04 | ||
| 3j15_B | 593 | Model Of Ribosome-Bound Archaeal Pelota And Abce1 L | 3e-04 | ||
| 3j16_B | 608 | Models Of Ribosome-Bound Dom34p And Rli1p And Their | 8e-04 |
| >pdb|1OXX|K Chain K, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc Transporter From Sulfolobus Solfataricus Length = 353 | Back alignment and structure |
|
| >pdb|1OXS|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc Transporter From Sulfolobus Solfataricus Length = 353 | Back alignment and structure |
|
| >pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex With Tnp-Adp Length = 243 | Back alignment and structure |
|
| >pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii Length = 362 | Back alignment and structure |
|
| >pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli Length = 241 | Back alignment and structure |
|
| >pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp Bound State Length = 247 | Back alignment and structure |
|
| >pdb|4HLU|D Chain D, Structure Of The Ecfa-a' Heterodimer Bound To Adp Length = 268 | Back alignment and structure |
|
| >pdb|3GFO|A Chain A, Structure Of Cbio1 From Clostridium Perfringens: Part Of The Abc Transporter Complex Cbionq Length = 275 | Back alignment and structure |
|
| >pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated Abc-atpase In Complex With Tnp-adp Length = 243 | Back alignment and structure |
|
| >pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In Complex With Adp Length = 247 | Back alignment and structure |
|
| >pdb|1V43|A Chain A, Crystal Structure Of Atpase Subunit Of Abc Sugar Transporter Length = 372 | Back alignment and structure |
|
| >pdb|1VCI|A Chain A, Crystal Structure Of The Atp-binding Cassette Of Multisugar Transporter From Pyrococcus Horikoshii Ot3 Complexed With Atp Length = 373 | Back alignment and structure |
|
| >pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding Protein Length = 359 | Back alignment and structure |
|
| >pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF HLYB-Nbd Length = 241 | Back alignment and structure |
|
| >pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The Abc-Transporter Hlyb In Complex With Adp Length = 247 | Back alignment and structure |
|
| >pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative Sulfate Atp-Binding Cassette (Abc) Transporter From Alicyclobacillus Acidocaldarius Length = 355 | Back alignment and structure |
|
| >pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter Cassette Length = 235 | Back alignment and structure |
|
| >pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284 | Back alignment and structure |
|
| >pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284 | Back alignment and structure |
|
| >pdb|3TIF|A Chain A, Dimeric Structure Of A Post-Hydrolysis State Of The Atp-Binding Cassette Mj0796 Bound To Adp And Pi Length = 235 | Back alignment and structure |
|
| >pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain Length = 243 | Back alignment and structure |
|
| >pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter Length = 1321 | Back alignment and structure |
|
| >pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 Length = 595 | Back alignment and structure |
|
| >pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+ Length = 242 | Back alignment and structure |
|
| >pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 (plate Form) Length = 619 | Back alignment and structure |
|
| >pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+ Length = 263 | Back alignment and structure |
|
| >pdb|1Q12|A Chain A, Crystal Structure Of The Atp-bound E. Coli Malk Length = 381 | Back alignment and structure |
|
| >pdb|1Q1B|A Chain A, Crystal Structure Of E. Coli Malk In The Nucleotide-Free Form Length = 381 | Back alignment and structure |
|
| >pdb|1G29|1 Chain 1, Malk Length = 372 | Back alignment and structure |
|
| >pdb|2R6G|A Chain A, The Crystal Structure Of The E. Coli Maltose Transporter Length = 381 | Back alignment and structure |
|
| >pdb|2D3W|A Chain A, Crystal Structure Of Escherichia Coli Sufc, An Atpase Compenent Of The Suf Iron-Sulfur Cluster Assembly Machinery Length = 248 | Back alignment and structure |
|
| >pdb|2ZU0|C Chain C, Crystal Structure Of Sufc-Sufd Complex Involved In The Iron- Sulfur Cluster Biosynthesis Length = 267 | Back alignment and structure |
|
| >pdb|2D62|A Chain A, Crystal Structure Of Multiple Sugar Binding Transport Atp- Binding Protein Length = 375 | Back alignment and structure |
|
| >pdb|2IXF|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (D645q, Q678h Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette Length = 235 | Back alignment and structure |
|
| >pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866 Length = 578 | Back alignment and structure |
|
| >pdb|4DBL|C Chain C, Crystal Structure Of E159q Mutant Of Btucdf Length = 249 | Back alignment and structure |
|
| >pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae Length = 582 | Back alignment and structure |
|
| >pdb|2D2E|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc From Thermus Thermophilus Hb8 Length = 250 | Back alignment and structure |
|
| >pdb|4FI3|C Chain C, Structure Of Vitamin B12 Transporter Btucd-F In A Nucleotide-Bound State Length = 249 | Back alignment and structure |
|
| >pdb|1VPL|A Chain A, Crystal Structure Of Abc Transporter Atp-binding Protein (tm0544) From Thermotoga Maritima At 2.10 A Resolution Length = 256 | Back alignment and structure |
|
| >pdb|1L7V|C Chain C, Bacterial Abc Transporter Involved In B12 Uptake Length = 249 | Back alignment and structure |
|
| >pdb|1G6H|A Chain A, Crystal Structure Of The Adp Conformation Of Mj1267, An Atp- Binding Cassette Of An Abc Transporter Length = 257 | Back alignment and structure |
|
| >pdb|1G9X|A Chain A, Characterization Of The Twinning Structure Of Mj1267, An Atp-Binding Cassette Of An Abc Transporter Length = 257 | Back alignment and structure |
|
| >pdb|2QI9|C Chain C, Abc-Transporter Btucd In Complex With Its Periplasmic Binding Protein Btuf Length = 249 | Back alignment and structure |
|
| >pdb|2PCJ|A Chain A, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex Aeolicus Vf5 Length = 224 | Back alignment and structure |
|
| >pdb|2NQ2|C Chain C, An Inward-Facing Conformation Of A Putative Metal-Chelate Type Abc Transporter. Length = 253 | Back alignment and structure |
|
| >pdb|1GAJ|A Chain A, Crystal Structure Of A Nucleotide-Free Atp-Binding Cassette From An Abc Transporter Length = 257 | Back alignment and structure |
|
| >pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In Its Inward- Facing Conformation Length = 587 | Back alignment and structure |
|
| >pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug Resistance Protein 2 Length = 260 | Back alignment and structure |
|
| >pdb|1YQT|A Chain A, Rnase-L Inhibitor Length = 538 | Back alignment and structure |
|
| >pdb|2IXE|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (d645n Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|3TUJ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc Transporter: Dm Crystal Form Length = 366 | Back alignment and structure |
|
| >pdb|1B0U|A Chain A, Atp-Binding Subunit Of The Histidine Permease From Salmonella Typhimurium Length = 262 | Back alignment and structure |
|
| >pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human Tap1 Length = 260 | Back alignment and structure |
|
| >pdb|2IXG|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (S621a, G622v, D645n Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|3OZX|A Chain A, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus (-Fes Domain) Length = 538 | Back alignment and structure |
|
| >pdb|3OZX|A Chain A, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus (-Fes Domain) Length = 538 | Back alignment and structure |
|
| >pdb|3FVQ|A Chain A, Crystal Structure Of The Nucleotide Binding Domain Fbpc Complexed With Atp Length = 359 | Back alignment and structure |
|
| >pdb|1JI0|A Chain A, Crystal Structure Analysis Of The Abc Transporter From Thermotoga Maritima Length = 240 | Back alignment and structure |
|
| >pdb|3D31|A Chain A, Modbc From Methanosarcina Acetivorans Length = 348 | Back alignment and structure |
|
| >pdb|2YZ2|A Chain A, Crystal Structure Of The Abc Transporter In The Cobalt Transport System Length = 266 | Back alignment and structure |
|
| >pdb|4HLU|A Chain A, Structure Of The Ecfa-a' Heterodimer Bound To Adp Length = 268 | Back alignment and structure |
|
| >pdb|3B5Y|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With Amppnp Length = 582 | Back alignment and structure |
|
| >pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba Length = 582 | Back alignment and structure |
|
| >pdb|3DHW|C Chain C, Crystal Structure Of Methionine Importer Metni Length = 343 | Back alignment and structure |
|
| >pdb|2ONK|A Chain A, Abc Transporter Modbc In Complex With Its Binding Protein Moda Length = 240 | Back alignment and structure |
|
| >pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure) Length = 306 | Back alignment and structure |
|
| >pdb|2IHY|A Chain A, Structure Of The Staphylococcus Aureus Putative Atpase Subunit Of An Atp-Binding Cassette (Abc) Transporter Length = 279 | Back alignment and structure |
|
| >pdb|3TUI|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc Transporter: Cy5 Native Crystal Form Length = 366 | Back alignment and structure |
|
| >pdb|3BK7|A Chain A, Structure Of The Complete Abce1RNAASE-L Inhibitor Protein From Pyrococcus Abysii Length = 607 | Back alignment and structure |
|
| >pdb|4G1U|C Chain C, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv From Yersinia Pestis Length = 266 | Back alignment and structure |
|
| >pdb|3J15|B Chain B, Model Of Ribosome-Bound Archaeal Pelota And Abce1 Length = 593 | Back alignment and structure |
|
| >pdb|3J16|B Chain B, Models Of Ribosome-Bound Dom34p And Rli1p And Their Ribosomal Binding Partners Length = 608 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 1202 | |||
| 1vpl_A | 256 | ABC transporter, ATP-binding protein; TM0544, stru | 4e-26 | |
| 1sgw_A | 214 | Putative ABC transporter; structural genomics, P p | 3e-23 | |
| 2nq2_C | 253 | Hypothetical ABC transporter ATP-binding protein H | 4e-23 | |
| 2nq2_C | 253 | Hypothetical ABC transporter ATP-binding protein H | 2e-06 | |
| 2qi9_C | 249 | Vitamin B12 import ATP-binding protein BTUD; inner | 1e-22 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 1e-20 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 2e-14 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 4e-20 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 1e-13 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 3e-05 | |
| 2ihy_A | 279 | ABC transporter, ATP-binding protein; ATPase, ABC | 6e-19 | |
| 2ihy_A | 279 | ABC transporter, ATP-binding protein; ATPase, ABC | 7e-09 | |
| 2pjz_A | 263 | Hypothetical protein ST1066; ATP binding protein, | 7e-19 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 1e-18 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 4e-13 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 9e-18 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 3e-12 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 6e-05 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 2e-04 | |
| 2yz2_A | 266 | Putative ABC transporter ATP-binding protein TM_0; | 6e-17 | |
| 2yz2_A | 266 | Putative ABC transporter ATP-binding protein TM_0; | 3e-06 | |
| 3gfo_A | 275 | Cobalt import ATP-binding protein CBIO 1; structur | 2e-15 | |
| 3gfo_A | 275 | Cobalt import ATP-binding protein CBIO 1; structur | 3e-08 | |
| 2pcj_A | 224 | ABC transporter, lipoprotein-releasing system ATP- | 2e-13 | |
| 1g6h_A | 257 | High-affinity branched-chain amino acid transport | 2e-13 | |
| 3tif_A | 235 | Uncharacterized ABC transporter ATP-binding prote; | 2e-13 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 8e-13 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 3e-12 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 2e-07 | |
| 2ff7_A | 247 | Alpha-hemolysin translocation ATP-binding protein | 2e-10 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 2e-10 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 5e-04 | |
| 2ghi_A | 260 | Transport protein; multidrug resistance protein, M | 3e-10 | |
| 2ghi_A | 260 | Transport protein; multidrug resistance protein, M | 3e-04 | |
| 3nh6_A | 306 | ATP-binding cassette SUB-family B member 6, mitoc; | 3e-10 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 8e-10 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 3e-07 | |
| 1mv5_A | 243 | LMRA, multidrug resistance ABC transporter ATP-bin | 8e-10 | |
| 2ixe_A | 271 | Antigen peptide transporter 1; ABC ATPase, hydrola | 8e-09 | |
| 2onk_A | 240 | Molybdate/tungstate ABC transporter, ATP-binding p | 9e-09 | |
| 3gd7_A | 390 | Fusion complex of cystic fibrosis transmembrane co | 5e-08 | |
| 3tui_C | 366 | Methionine import ATP-binding protein METN; ABC-tr | 3e-07 | |
| 1oxx_K | 353 | GLCV, glucose, ABC transporter, ATP binding protei | 5e-07 | |
| 3fvq_A | 359 | Fe(3+) IONS import ATP-binding protein FBPC; nucle | 5e-07 | |
| 2bbs_A | 290 | Cystic fibrosis transmembrane conductance regulato | 6e-07 | |
| 1z47_A | 355 | CYSA, putative ABC-transporter ATP-binding protein | 6e-07 | |
| 3qkt_A | 339 | DNA double-strand break repair RAD50 ATPase; RECA- | 7e-07 | |
| 4a82_A | 578 | Cystic fibrosis transmembrane conductance regulat; | 7e-07 | |
| 3b5x_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 1e-06 | |
| 2pze_A | 229 | Cystic fibrosis transmembrane conductance regulat; | 2e-06 | |
| 2yl4_A | 595 | ATP-binding cassette SUB-family B member 10, mitoc | 2e-06 | |
| 2cbz_A | 237 | Multidrug resistance-associated protein 1; ABC pro | 2e-06 | |
| 3b60_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 2e-06 | |
| 1ji0_A | 240 | ABC transporter; ATP binding protein, structural g | 4e-06 | |
| 3d31_A | 348 | Sulfate/molybdate ABC transporter, ATP-binding pro | 5e-06 | |
| 2d2e_A | 250 | SUFC protein; ABC-ATPase, SUF protein, 310-helix, | 5e-06 | |
| 2it1_A | 362 | 362AA long hypothetical maltose/maltodextrin trans | 2e-05 | |
| 2zu0_C | 267 | Probable ATP-dependent transporter SUFC; iron-sulf | 4e-05 | |
| 1v43_A | 372 | Sugar-binding transport ATP-binding protein; ATPas | 1e-04 | |
| 2yyz_A | 359 | Sugar ABC transporter, ATP-binding protein; sugar | 2e-04 | |
| 1f2t_B | 148 | RAD50 ABC-ATPase; DNA double-strand break repair, | 2e-04 | |
| 1g29_1 | 372 | MALK, maltose transport protein MALK; ATPase, acti | 8e-04 |
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 Length = 256 | Back alignment and structure |
|---|
Score = 108 bits (271), Expect = 4e-26
Identities = 46/186 (24%), Positives = 78/186 (41%), Gaps = 16/186 (8%)
Query: 632 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGY-PKKQETFA 688
L G+S G + L+G +GAGKTT + +++ + + G +T+ G ++
Sbjct: 31 LKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSG----IVTVFGKNVVEEPHEV 86
Query: 689 RIS-GYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSL 747
R Y + + E L F A S + E ++ E+ L +
Sbjct: 87 RKLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEM---VERATEIAGLGEKIKDR 143
Query: 748 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT 807
V S ++L IA L+ NP + +DEPTSGLD A V + ++ G T
Sbjct: 144 VS-----TYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLT 198
Query: 808 VVCTIH 813
++ + H
Sbjct: 199 ILVSSH 204
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 Length = 214 | Back alignment and structure |
|---|
Score = 98.4 bits (246), Expect = 3e-23
Identities = 38/205 (18%), Positives = 80/205 (39%), Gaps = 27/205 (13%)
Query: 632 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIT---GNITISGYPKKQETFA 688
L ++ G + G +G GKTTL+ ++ Y+ G I +G P +
Sbjct: 25 LERITMTIEKGNVVNFHGPNGIGKTTLLKTIST-----YLKPLKGEIIYNGVPIT-KVKG 78
Query: 689 RISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLV 748
+I + + I +++ + L A L K I + +E VE+ L++
Sbjct: 79 KI-FFLPEEIIVPRKISVEDYLKAVASLYGVKV-----NKNEIMDALESVEVLDLKKK-- 130
Query: 749 GLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DTGRT 807
+ LS +R+ +A L+ N I +D+P +D + V++++ + + G
Sbjct: 131 ----LGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIV 186
Query: 808 VVCTIHQPSIDIFEAFDELFLMKRG 832
++ + D + +
Sbjct: 187 IISSRE-----ELSYCDVNENLHKY 206
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} Length = 253 | Back alignment and structure |
|---|
Score = 98.8 bits (247), Expect = 4e-23
Identities = 51/239 (21%), Positives = 97/239 (40%), Gaps = 41/239 (17%)
Query: 615 MPEEMKVQGVL---EDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGG 669
M + + V+ + + + L ++ G + A++G +G GK+TL+D+L G R G
Sbjct: 1 MNKALSVENLGFYYQAENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQG 60
Query: 670 YITGNITISGYPKKQETFARISGYCEQNDIHSPF-VTIYESLLF------SAWLRLSPEV 722
I + G+ Q SPF ++ + +L + + +
Sbjct: 61 KIE--------------VYQSIGFVPQF-FSSPFAYSVLDIVLMGRSTHINTFAKPKSH- 104
Query: 723 DSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEP 782
D + + ++ + L L + + LS QR+ + IA + + +I +DEP
Sbjct: 105 DYQV----AMQALDYLNLTHLAKREF-----TSLSGGQRQLILIARAIASECKLILLDEP 155
Query: 783 TSGLDARAAAIVMRTVRN-TVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGP 840
TS LD IV+ + + TVV T HQP+ + ++ L+ + G
Sbjct: 156 TSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPNQ-VVAIANKTLLLNKQ--NFKFGE 211
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} Length = 253 | Back alignment and structure |
|---|
Score = 49.9 bits (120), Expect = 2e-06
Identities = 21/136 (15%), Positives = 48/136 (35%), Gaps = 20/136 (14%)
Query: 32 YMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPAL 91
++ A + L L L A +SGGQ++ + ++ A+
Sbjct: 94 HINTFAKPKSHDYQVAMQALDYLNLTHLAKREFTS-----LSGGQRQLI-----LIARAI 143
Query: 92 A-----LFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISL--LQPAPETYDLFDDII 144
A + +DE ++ LD + +++ L + T V + + + +
Sbjct: 144 ASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPNQVVA---IANKTL 200
Query: 145 LLSDGQIVYQGPRELV 160
LL+ + R ++
Sbjct: 201 LLNKQNFKFGETRNIL 216
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C Length = 249 | Back alignment and structure |
|---|
Score = 97.6 bits (244), Expect = 1e-22
Identities = 42/215 (19%), Positives = 80/215 (37%), Gaps = 33/215 (15%)
Query: 631 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG-RKTGGYIT-GNITISGYPKKQETFA 688
L +SG R G + L+G +GAGK+TL+ +AG G I + + + A
Sbjct: 15 RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGKGSIQFAGQPLEAWSATK--LA 72
Query: 689 RISGYCEQNDIHSPF-VTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSL 747
Y Q PF ++ L + +E +++V + L+
Sbjct: 73 LHRAYLSQ-QQTPPFATPVWHYLTLH----QHDKTRTEL----LNDVAGALALDDKLGRS 123
Query: 748 VGLPGVSGLSTEQRKRLTIA-------VELVANPSIIFMDEPTSGLDARAAAIVMRTVRN 800
+ LS + +R+ +A + ++ +DEP + LD + + + +
Sbjct: 124 T-----NQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSA 178
Query: 801 TVDTGRTVVCTIHQPSIDIFEAF---DELFLMKRG 832
G +V + H D+ +L+K G
Sbjct: 179 LSQQGLAIVMSSH----DLNHTLRHAHRAWLLKGG 209
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 96.6 bits (241), Expect = 1e-20
Identities = 43/224 (19%), Positives = 81/224 (36%), Gaps = 35/224 (15%)
Query: 595 MVLPFEPHSLTFDEVVYSVDMPEEMKVQGVLEDKLV------LLNGVSGAFRPGVLTALM 648
L F +L F + D+ + + L +LN G F + +M
Sbjct: 325 ENLRFRTEALQFRIADATEDLQNDSASRAFSYPSLKKTQGDFVLNVEEGEFSDSEILVMM 384
Query: 649 GVSGAGKTTLMDVLAG--RKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTI 706
G +G GKTTL+ +LAG + G + +S P+K + F
Sbjct: 385 GENGTGKTTLIKLLAGALKPDEGQDIPKLNVSMKPQK-------IAPKFPGTVRQLF--- 434
Query: 707 YESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTI 766
++ + F +V++ + ++ + V LS + +R+ I
Sbjct: 435 FKKI-----------RGQFLNPQFQTDVVKPLRIDDIIDQEV-----QHLSGGELQRVAI 478
Query: 767 AVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DTGRTVV 809
+ L I +DEP++ LD+ I + +R + +T
Sbjct: 479 VLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAF 522
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 77.0 bits (190), Expect = 2e-14
Identities = 36/183 (19%), Positives = 71/183 (38%), Gaps = 21/183 (11%)
Query: 640 RPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNIT---ISGYPKKQETFARISGYC 694
RPG + L+G +G GK+T + +LAG + G I Y + E +
Sbjct: 101 RPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEIIKYFRGSELQNYFTKML 160
Query: 695 EQND---IHSPFV-----TIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQS 746
E + I +V I + L ++ E + +++++L + +
Sbjct: 161 EDDIKAIIKPQYVDNIPRAIKGPVQKVGELL---KLRMEKSPEDVKRYIKILQLENVLKR 217
Query: 747 LVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGR 806
+ LS + +R I + V + DEP+S LD + + +R+ + +
Sbjct: 218 -----DIEKLSGGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTK 272
Query: 807 TVV 809
V+
Sbjct: 273 YVI 275
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 95.1 bits (237), Expect = 4e-20
Identities = 55/244 (22%), Positives = 97/244 (39%), Gaps = 32/244 (13%)
Query: 572 GQQSSSQSLSLAEAEASRPKKKGMVLPFEPHSLTFDEVVYSVDMPEEMKVQGVLEDK--- 628
G S + E + K + F P+ + F ++ VD+ E V+ K
Sbjct: 309 GIFSKPKGTRNGINEFLQGYLKDENVRFRPYEIRFTKLSERVDVERETLVEYPRLVKDYG 368
Query: 629 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYPKKQET 686
L G R G + ++G +G GKTT + +LAG T G + ++T++ K Q
Sbjct: 369 SFKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDLTVA--YKPQ-- 424
Query: 687 FARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQS 746
I T+YE L S + + E+++ + + L
Sbjct: 425 --YIK--------AEYEGTVYE--LLS-----KIDSSKLNSNFYKTELLKPLGIIDLYDR 467
Query: 747 LVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TG 805
V LS + +R+ IA L+ + I +DEP++ LD V R +R+ ++
Sbjct: 468 NV-----EDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNE 522
Query: 806 RTVV 809
+T +
Sbjct: 523 KTAL 526
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 74.3 bits (183), Expect = 1e-13
Identities = 41/186 (22%), Positives = 77/186 (41%), Gaps = 14/186 (7%)
Query: 630 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGR----KTGGYITGNITISGYPKK-- 683
+ + G++ ++G +G GKTT + +LAG+ + + I +
Sbjct: 105 AFVLYRLPIVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNEL 164
Query: 684 QETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPL 743
Q F R+ + + +V + + L +VD + +EV++ +EL +
Sbjct: 165 QNYFERLKNGEIRPVVKPQYVDLLPKAVKGKVRELLKKVDEVGK---FEEVVKELELENV 221
Query: 744 RQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD 803
+ LS + +R+ IA L+ F DEP+S LD R V R +R +
Sbjct: 222 LDRELHQ-----LSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLAN 276
Query: 804 TGRTVV 809
G+ V+
Sbjct: 277 EGKAVL 282
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 46.9 bits (112), Expect = 3e-05
Identities = 40/183 (21%), Positives = 69/183 (37%), Gaps = 37/183 (20%)
Query: 23 IKPDPD---IDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKR 79
IK + + ++ K +++ T+ LK LG+ D V D +SGG+ +R
Sbjct: 426 IKAEYEGTVYELLSKIDSSKLNSNFYKTEL-LKPLGIIDLYDRNVED-----LSGGELQR 479
Query: 80 VTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTA-VISLLQPAPETYD 138
V ++ A +DE S LD + +R + N TA V+ +D
Sbjct: 480 VAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVE--------HD 531
Query: 139 LF------DDIILLSDGQIVYQGPRELVLEFFASMGFRCPKRKGVADFLQE--VTSRKDQ 190
+ D +I+ +G+ G L R+G+ FL +T R+D
Sbjct: 532 VLMIDYVSDRLIVF-EGEPGRHGR---ALPPM-------GMREGMNRFLASVGITFRRDP 580
Query: 191 RQY 193
Sbjct: 581 DSG 583
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} Length = 279 | Back alignment and structure |
|---|
Score = 87.7 bits (218), Expect = 6e-19
Identities = 46/218 (21%), Positives = 94/218 (43%), Gaps = 28/218 (12%)
Query: 630 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGR--KTGGYITGNITISGYPKKQETF 687
+L +S G L G++GAGKTTL+++L T +G + + G + +
Sbjct: 35 TILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPAT----SGTVNLFGKMPGKVGY 90
Query: 688 ------ARISGYCEQNDIH---SPFVTIYESLL--FSAWLRLSPEVDSETRKMFIDEVME 736
I G+ + + + ++ + + ++D E R ++++
Sbjct: 91 SAETVRQHI-GFVSH-SLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNE-AHQLLK 147
Query: 737 LVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR 796
LV ++ Q +G LST +++R+ IA L+ P ++ +DEP +GLD A ++
Sbjct: 148 LVGMSAKAQQYIG-----YLSTGEKQRVMIARALMGQPQVLILDEPAAGLDFIARESLLS 202
Query: 797 TVR--NTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 832
+ + ++ H +I F ++ L+K G
Sbjct: 203 ILDSLSDSYPTLAMIYVTHFIE-EITANFSKILLLKDG 239
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} Length = 279 | Back alignment and structure |
|---|
Score = 57.6 bits (140), Expect = 7e-09
Identities = 34/131 (25%), Positives = 52/131 (39%), Gaps = 23/131 (17%)
Query: 40 GQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALA-----LF 94
E LK++G+ A I +S G+K+RV M+ AL L
Sbjct: 135 DDEIRNEAHQLLKLVGMSAKAQQY-----IGYLSTGEKQRV-----MIARALMGQPQVLI 184
Query: 95 MDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISL----LQPAPETYDLFDDIILLSDGQ 150
+DE + GLD +++ L A+I ++ F I+LL DGQ
Sbjct: 185 LDEPAAGLDFIARESLLSILDSLSDSYPTLAMI-YVTHFIEEITA---NFSKILLLKDGQ 240
Query: 151 IVYQGPRELVL 161
+ QG E +L
Sbjct: 241 SIQQGAVEDIL 251
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} Length = 263 | Back alignment and structure |
|---|
Score = 87.0 bits (216), Expect = 7e-19
Identities = 33/212 (15%), Positives = 71/212 (33%), Gaps = 43/212 (20%)
Query: 641 PGVLTALMGVSGAGKTTLMDVLAG-RKTGGYIT-GNITISGYPKKQETFARISGYCEQND 698
G ++G +G+GKTTL+ ++G G I + + Y
Sbjct: 29 NGEKVIILGPNGSGKTTLLRAISGLLPYSGNIFINGMEVRKIRNYI-------RYSTNLP 81
Query: 699 IHSPF-VTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPG----- 752
VT+ + + L + + D +E+++ + L
Sbjct: 82 EAYEIGVTVNDIVYLY--EEL--------KGLDRDLFLEMLKA-------LKLGEEILRR 124
Query: 753 -VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCT 811
+ LS Q + ++ L + P I+ +DEP +DA ++ R ++ + G+ +
Sbjct: 125 KLYKLSAGQSVLVRTSLALASQPEIVGLDEPFENVDAARRHVISRYIK---EYGKEGILV 181
Query: 812 IHQPSIDIFEAF---DELFLMKRGGQEIYVGP 840
H ++ + G +
Sbjct: 182 TH----ELDMLNLYKEYKAYFLVGNRLQGPIS 209
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 90.4 bits (225), Expect = 1e-18
Identities = 43/181 (23%), Positives = 77/181 (42%), Gaps = 29/181 (16%)
Query: 632 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYPKKQETFAR 689
L G + G + ++G +G GKTT + +LAG T G I ++T++ K Q
Sbjct: 302 LEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEWDLTVA--YKPQ----Y 355
Query: 690 ISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVG 749
I T+YE L S + + E+++ + + L V
Sbjct: 356 IK--------ADYEGTVYE--LLS-----KIDASKLNSNFYKTELLKPLGIIDLYDREV- 399
Query: 750 LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTV 808
+ LS + +R+ IA L+ + I +DEP++ LD V R +R+ ++ +T
Sbjct: 400 ----NELSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTA 455
Query: 809 V 809
+
Sbjct: 456 L 456
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 72.3 bits (178), Expect = 4e-13
Identities = 40/180 (22%), Positives = 81/180 (45%), Gaps = 22/180 (12%)
Query: 640 RPGVLTALMGVSGAGKTTLMDVLAGR----KTGGYITGNITISGYPKK--QETFARISGY 693
+ G++ ++G +G GK+T + +LAG+ G + + I + Q F ++
Sbjct: 45 KEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNYFEKLKN- 103
Query: 694 CEQNDIH----SPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVG 749
+I +V + + + L + D + ++EV++ +EL + + +
Sbjct: 104 ---GEIRPVVKPQYVDLIPKAVKGKVIELLKKADETGK---LEEVVKALELENVLEREI- 156
Query: 750 LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVV 809
LS + +R+ IA L+ N + F DEP+S LD R R +R + G++V+
Sbjct: 157 ----QHLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVL 212
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 87.4 bits (217), Expect = 9e-18
Identities = 43/185 (23%), Positives = 74/185 (40%), Gaps = 26/185 (14%)
Query: 630 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYPKKQETF 687
L +G + G + ++G +G GKTT +L G G +T I Y K Q F
Sbjct: 282 FQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEKQILSY-KPQRIF 340
Query: 688 ARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSL 747
+ T+ + +L + + T F +EV + + L+ L +S
Sbjct: 341 P------------NYDGTVQQ------YLENASKDALSTSSWFFEEVTKRLNLHRLLESN 382
Query: 748 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT 807
V + LS + ++L IA L + +D+P+S LD IV + ++ +
Sbjct: 383 V-----NDLSGGELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKA 437
Query: 808 VVCTI 812
V I
Sbjct: 438 VTFII 442
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 69.7 bits (171), Expect = 3e-12
Identities = 39/185 (21%), Positives = 67/185 (36%), Gaps = 23/185 (12%)
Query: 640 RPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGY------ 693
+ + ++G +G GKTT++ +LAG + N K E R G
Sbjct: 23 KNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSK----VGKDEVLKRFRGKEIYNYF 78
Query: 694 -----CEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLV 748
E +H Y S + + + DEV EL+ + L
Sbjct: 79 KELYSNELKIVHKIQYVEYASKFLKGTVNEI--LTKIDERGKKDEVKELLNMTNLWN--- 133
Query: 749 GLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTV 808
+ LS +RL +A L+ + D+P+S LD R + + +R + + V
Sbjct: 134 --KDANILSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRELLK-NKYV 190
Query: 809 VCTIH 813
+ H
Sbjct: 191 IVVDH 195
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 46.2 bits (110), Expect = 6e-05
Identities = 27/169 (15%), Positives = 51/169 (30%), Gaps = 40/169 (23%)
Query: 73 SGGQKKRVTTGEMMVGPALA-----LFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVI 127
SGG +R+ +V +L D+ S+ LD + +R+ + VI
Sbjct: 140 SGGGLQRL-----LVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRE---LLKNKYVI 191
Query: 128 ------SLLQPAPETYDLFDDIILLSDGQIVYQG------PRELVLEFFAS------MGF 169
+L L D I ++ VY R + F M
Sbjct: 192 VVDHDLIVLD------YLTDLIHIIYGESSVYGRVSKSYAARVGINNFLKGYLPAENMKI 245
Query: 170 RCPKRKGVADFLQEVTSRKDQRQYWAHKEKPYRFVTVQEFAEAFQSFHV 218
R + K + + ++ KD + + + +F +
Sbjct: 246 RPDEIKFMLKEVSDLDLSKDLKTKM---KWTKIIKKLGDFQLVVDNGEA 291
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 44.6 bits (106), Expect = 2e-04
Identities = 34/183 (18%), Positives = 64/183 (34%), Gaps = 36/183 (19%)
Query: 23 IKPDPDIDVYM---KAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKR 79
I P+ D V A ++ + K L L ++ V D +SGG+ ++
Sbjct: 339 IFPNYDGTVQQYLENASKDALSTSSWFFEEVTKRLNLHRLLESNVND-----LSGGELQK 393
Query: 80 VTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTA-VISLLQPAPETYD 138
+ + A +D+ S+ LD + + +++ +I +D
Sbjct: 394 LYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIID--------HD 445
Query: 139 LF------DDIILLSDGQIVYQGPRELVLEFFASMGFRCPKRKGVADFLQE--VTSRKDQ 190
L D II+ G+ G + + G+ +FL+E VT R+D
Sbjct: 446 LSIHDYIADRIIVF-KGEPEKAGLATSPVTL----------KTGMNEFLRELEVTFRRDA 494
Query: 191 RQY 193
Sbjct: 495 ETG 497
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} Length = 266 | Back alignment and structure |
|---|
Score = 81.1 bits (201), Expect = 6e-17
Identities = 54/241 (22%), Positives = 96/241 (39%), Gaps = 39/241 (16%)
Query: 603 SLTFDEV--VYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMD 660
+ V ++ P E K L VS G + G +G+GK+TL+
Sbjct: 2 RIEVVNVSHIFHRGTPLEKKA----------LENVSLVINEGECLLVAGNTGSGKSTLLQ 51
Query: 661 VLAG--RKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPF-VTIYESLLFSAWLR 717
++AG T +G++ G KK R G Q F +++ + F+
Sbjct: 52 IVAGLIEPT----SGDVLYDGERKKGYEIRRNIGIAFQYPEDQFFAERVFDEVAFA---- 103
Query: 718 LSPE---VDSETRKMFIDEVMELVELNP---LRQSLVGLPGVSGLSTEQRKRLTIAVELV 771
+ D + + + + ME V L+ + P LS +++R+ IA +V
Sbjct: 104 --VKNFYPDRDPVPL-VKKAMEFVGLDFDSFKDRV----P--FFLSGGEKRRVAIASVIV 154
Query: 772 ANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKR 831
P I+ +DEP GLD ++R V G+TV+ H + D + ++++
Sbjct: 155 HEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHDIE-TVINHVDRVVVLEK 213
Query: 832 G 832
G
Sbjct: 214 G 214
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} Length = 266 | Back alignment and structure |
|---|
Score = 49.1 bits (118), Expect = 3e-06
Identities = 23/97 (23%), Positives = 38/97 (39%), Gaps = 21/97 (21%)
Query: 73 SGGQKKRVTTGEMMVGPALA---------LFMDEISTGLDSSTTFQIVNCLRQNIHINSG 123
SGG+K+RV A+A L +DE GLD ++ + + G
Sbjct: 140 SGGEKRRV---------AIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEK-WK-TLG 188
Query: 124 TAVISLLQPAPETYDLFDDIILLSDGQIVYQG-PREL 159
VI + + D +++L G+ V+ G E
Sbjct: 189 KTVILISHDIETVINHVDRVVVLEKGKKVFDGTRMEF 225
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} Length = 275 | Back alignment and structure |
|---|
Score = 77.2 bits (191), Expect = 2e-15
Identities = 48/217 (22%), Positives = 92/217 (42%), Gaps = 36/217 (16%)
Query: 632 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYP--KKQETF 687
L G++ + G +TA++G +G GK+TL G + + +G I P ++
Sbjct: 24 LKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPS----SGRILFDNKPIDYSRKGI 79
Query: 688 ARIS---GYCEQNDIHSP---FV--TIYESLLFSAWLRLSPE---VDSETRKMFIDEVME 736
++ G Q+ P ++Y+ + F + + + +D ++
Sbjct: 80 MKLRESIGIVFQD----PDNQLFSASVYQDVSFG------AVNMKLPEDEIRKRVDNALK 129
Query: 737 LVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR 796
+ L+ LS Q+KR+ IA LV P ++ +DEPT+GLD + +M+
Sbjct: 130 RTGIEHLKDK-----PTHCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMK 184
Query: 797 TVRN-TVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 832
+ + G T++ H + D +F+MK G
Sbjct: 185 LLVEMQKELGITIIIATHDID-IVPLYCDNVFVMKEG 220
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} Length = 275 | Back alignment and structure |
|---|
Score = 55.2 bits (134), Expect = 3e-08
Identities = 29/123 (23%), Positives = 51/123 (41%), Gaps = 22/123 (17%)
Query: 73 SGGQKKRVTTGEMMVGPALA---------LFMDEISTGLDSSTTFQIVNCLRQNIHINSG 123
S GQKKRV A+A L +DE + GLD +I+ L + + G
Sbjct: 145 SFGQKKRV---------AIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVE-MQKELG 194
Query: 124 TAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVL---EFFASMGFRCPKRKGVADF 180
+I D++ ++ +G+++ QG + V E + R P+ + +
Sbjct: 195 ITIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFAEKEVIRKVNLRLPRIGHLMEI 254
Query: 181 LQE 183
L+E
Sbjct: 255 LKE 257
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A Length = 224 | Back alignment and structure |
|---|
Score = 69.8 bits (172), Expect = 2e-13
Identities = 44/202 (21%), Positives = 78/202 (38%), Gaps = 35/202 (17%)
Query: 632 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGG-YITGNITISGYPKKQETFA 688
L G+S + + G +++G SG+GK+TL+ +L T G + +K+ +
Sbjct: 20 LKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELSLL 79
Query: 689 RISGYCEQNDIHSPFVTIYESLL--FSAW------LRLSPEVDSETRKMFIDEVMELVEL 740
R N FV + L+ +A + + K + L+
Sbjct: 80 R-------NR-KLGFVFQFHYLIPELTALENVIVPMLKM-GKPKKEAK---ERGEYLLSE 127
Query: 741 NPLRQSLVGLPGVSG-----LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM 795
+GL LS +++R+ IA L P ++F DEPT LD+ VM
Sbjct: 128 -------LGLGDKLSRKPYELSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVM 180
Query: 796 RTVRNTVDTGRTVVCTIHQPSI 817
+ G ++V H+ +
Sbjct: 181 DIFLKINEGGTSIVMVTHEREL 202
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* Length = 257 | Back alignment and structure |
|---|
Score = 70.6 bits (174), Expect = 2e-13
Identities = 47/203 (23%), Positives = 80/203 (39%), Gaps = 37/203 (18%)
Query: 629 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GNITISGYPKKQ- 684
L+GVS + G +T ++G +G+GK+TL++V+ G + G + N I+ +
Sbjct: 20 FKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAEL 79
Query: 685 ------ETFARISGYCEQNDIH------------SPFVTIYESLLFSAWLRLSPEVDSET 726
TF Q + ES L S + + + E
Sbjct: 80 YHYGIVRTF--------QT-PQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEM 130
Query: 727 RKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 786
+ +++E ++L+ L G LS Q K + I L+ NP +I MDEP +G+
Sbjct: 131 VEK-AFKILEFLKLSHLYDRKAG-----ELSGGQMKLVEIGRALMTNPKMIVMDEPIAGV 184
Query: 787 DARAAAIVMRTVRNTVDTGRTVV 809
A + V G T +
Sbjct: 185 APGLAHDIFNHVLELKAKGITFL 207
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* Length = 235 | Back alignment and structure |
|---|
Score = 69.9 bits (172), Expect = 2e-13
Identities = 53/201 (26%), Positives = 95/201 (47%), Gaps = 16/201 (7%)
Query: 626 EDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGG-YITGNITISGYPK 682
E+ + L V+ + G ++MG SG+GK+T+++++ + T G NI +
Sbjct: 15 EEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDD 74
Query: 683 KQETFAR---ISGYCEQ--NDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMEL 737
+ T R I G+ Q N I P +T E++ + + E R+ E +++
Sbjct: 75 DELTKIRRDKI-GFVFQQFNLI--PLLTALENVELPLIFKYRGAMSGEERRKRALECLKM 131
Query: 738 VELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT 797
EL + P + LS Q++R+ IA L NP II D+PT LD++ +M+
Sbjct: 132 AELEERFANH--KP--NQLSGGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQL 187
Query: 798 VRN-TVDTGRTVVCTIHQPSI 817
++ + G+TVV H ++
Sbjct: 188 LKKLNEEDGKTVVVVTHDINV 208
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 72.2 bits (176), Expect = 8e-13
Identities = 96/705 (13%), Positives = 181/705 (25%), Gaps = 236/705 (33%)
Query: 521 FLDPFEK----------PRAVIT-EEIES-NEQDDRIGGNVQLSTLGGSSNHNTRSGSTD 568
F D F P+++++ EEI+ D + G ++L S +
Sbjct: 25 FEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVE 84
Query: 569 DIRGQ-----------QSSSQSLSLAEAEASRPKKKGMVLPFEPHSLTFDEVVYSVDMPE 617
++ + S+ R + F Y+V +
Sbjct: 85 EVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAK---------YNVSRLQ 135
Query: 618 EMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTL-MDVLAGRKTGGYITGNI- 675
L L+ L RP + GV G+GKT + +DV K + I
Sbjct: 136 PYLK---LRQALLEL-------RPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIF 185
Query: 676 --TISGYPKKQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDE 733
+ C + T+ E L ++ P S + +
Sbjct: 186 WLNL--------------KNCNSPE------TVLEMLQ-KLLYQIDPNWTSRSDHSSNIK 224
Query: 734 VMELVELNPLRQSLVGLPGVSGLSTEQRKR-LTIAVEL--VANPSIIFMDEPTSGLDARA 790
+ ++ ++ L L L ++ + L + L V N + +
Sbjct: 225 ----LRIHSIQAELRRL-----LKSKPYENCLLV---LLNVQNAKAW------NAFNLSC 266
Query: 791 AAIVMRTVRN-TVDTGRTVVCTIHQPSIDIFEAFDE-----LFL----MKRGG---QEIY 837
++ T R V + T H L L + + +
Sbjct: 267 KILL--TTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLT 324
Query: 838 VGPLGRHSCHLISYFEAIPGVQKIKDGYNPATWMLEVSAASQELALGIDFTEHYKRSDLY 897
P +S I+DG ATW D +H L
Sbjct: 325 TNPR------RLSIIAE-----SIRDG--LATW---------------DNWKHVNCDKLT 356
Query: 898 RRNKALIEDLSRPPPGSKDLY-----FPTQFSQSSWI-QFVACLWKQHWSYWRNPPYTAV 951
++ + L P + ++ FP S+ I + L W + + V
Sbjct: 357 TIIESSLNVLE--PAEYRKMFDRLSVFP----PSAHIPTILLSL------IWFDVIKSDV 404
Query: 952 RFFFTAFIALLFGSLFWDLGGRTKRNQDLFNAMGSMFTAVLFLGVQYCSSVQPIVSVERT 1011
SL ++ + + Y
Sbjct: 405 MVVVNKLHKY---SLV-------EKQPKES---------TISIPSIYLE----------- 434
Query: 1012 VFYREKAAGMYAGIPWALAQVMIEIPYILVQSVVYGAIVYAMIGFEWTAAKFFWYIFFMY 1071
+ K Y AL + +++ Y + + F+ Y
Sbjct: 435 --LKVKLENEY-----ALHRSIVD-HYNIPK------------TFDSD--DLIPPYLDQY 472
Query: 1072 FTLLFFTFYGMMAVALTPNHHIAAIVSTLFYGLWNVFS------GFIIPRPRIPIWWRWY 1125
F++ G HH+ I +F F+ + R
Sbjct: 473 ----FYSHIG---------HHLKNI---EHPERMTLFRMVFLDFRFLEQKIR-------- 508
Query: 1126 YWANPIAWTLYGLVASQFGDMDDKK---MDTGETVKQFLKDYFDF 1167
+ AW G + + + K D ++ + DF
Sbjct: 509 --HDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDF 551
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 70.3 bits (171), Expect = 3e-12
Identities = 100/669 (14%), Positives = 196/669 (29%), Gaps = 212/669 (31%)
Query: 149 GQIVYQGPRELVLEFFASM--GFRCPKRKGVADFLQEVTSRKD--------------QRQ 192
G+ YQ ++++ F + F C K V D + + S+++ R
Sbjct: 12 GEHQYQY-KDILSVFEDAFVDNFDC---KDVQDMPKSILSKEEIDHIIMSKDAVSGTLRL 67
Query: 193 YWAHKEKPYRFVTVQEFAEAFQSFHVG---QKISDELRTPFDKSKSHRAALTTETYGVGK 249
+W K VQ+F E + I E R P ++ T Y + +
Sbjct: 68 FWTLLSKQEE--MVQKFVEEVLRINYKFLMSPIKTEQRQP---------SMMTRMY-IEQ 115
Query: 250 RELL--------KANISRELLLMK-RNSFVYIFKLIQIAFVAVVYMTLFLRTKMHKDTVT 300
R+ L K N+SR +K R + + +L V + +
Sbjct: 116 RDRLYNDNQVFAKYNVSRLQPYLKLRQA---LLELRPAKNVLIDGV-------------- 158
Query: 301 DGGIFAGATFFAITMVNFNGFSEISMTIAKLPVFYKQRDFRFFPPWA----YAIPSWILK 356
G +G T+ A+ + + DF+ F W P +L+
Sbjct: 159 -LG--SGKTWVALDVCLSYKVQ-------------CKMDFKIF--WLNLKNCNSPETVLE 200
Query: 357 IPVSFLEVAVWVFLSYYVVGYDSNAGRFFKQYALLLGVNQMASALFRFIAVTGRNMVVAN 416
+ Y + + + R + L ++ + + L R + ++ N
Sbjct: 201 MLQKL----------LYQIDPNWTS-RSDHSSNIKLRIHSIQAELRRLL----KSKPYEN 245
Query: 417 TFGSFALLVLLSLGGFILSREDIKKWWKWAYW---CSPLTYAQNAIVAN---------EF 464
LLVL +++ W + C L + V +
Sbjct: 246 -----CLLVL----------LNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHIS 290
Query: 465 LGHSWKKFTQDSSETLGVQVLKS------------------------RGFFAH-EYWYWL 499
L H T D ++L ++ L R A + W +
Sbjct: 291 LDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHV 350
Query: 500 GLGALFGFVLLLNFAYTLALTFLDP------------FEK----PRAVIT---EEIESNE 540
L +L L+P F P +++ ++ ++
Sbjct: 351 NCDKL-------TTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSD 403
Query: 541 QDDRIGGNVQLSTLGGSSNHNTRS--GSTDDIRGQQSSSQSLSLAEAEASRPKKKGMVLP 598
+ + S + +T S +++ + + +L + + K
Sbjct: 404 VMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKT----- 458
Query: 599 FEPHSLT---FDEVVYS--------VDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTA- 646
F+ L D+ YS ++ PE M ++V L+ FR L
Sbjct: 459 FDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMT-----LFRMVFLD-----FR--FLEQK 506
Query: 647 --LMGVSGAGKTTLMDVLAG-RKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPF 703
+ ++++ L + YI N Y + E+N I S +
Sbjct: 507 IRHDSTAWNASGSILNTLQQLKFYKPYICDNDPK--YERLVNAILDFLPKIEENLICSKY 564
Query: 704 VTIYESLLF 712
+ L
Sbjct: 565 TDLLRIALM 573
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 54.5 bits (130), Expect = 2e-07
Identities = 74/560 (13%), Positives = 149/560 (26%), Gaps = 178/560 (31%)
Query: 9 EMLTELARREKAAGIKPDPDIDVY-MKAIATEGQEANVITDYYLK-VLGLDVCADTMVGD 66
+ +L R+ ++P ++ + + G K + LDVC V
Sbjct: 135 QPYLKL--RQALLELRPAKNVLIDGVLGS---G-----------KTWVALDVCLSYKVQC 178
Query: 67 EMIRGI---SGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSG 123
+M I + T M+ L ++ D S+ + + I+S
Sbjct: 179 KMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIK--------LRIHSI 230
Query: 124 TAVISLL---QPAPETYDLFDDIILLSDGQIVYQGPRELVLEFFASMGFRCP-----KRK 175
A + L +P + ++ + + + C + K
Sbjct: 231 QAELRRLLKSKPYENCLLVLLNV---QNAKAW------------NAFNLSCKILLTTRFK 275
Query: 176 GVADFLQEVTSRKDQRQYWAHKEKPYRFVTVQEFAEAFQSFHVGQKISDELRTPFDKSKS 235
V DFL T H T E + + + D P + +
Sbjct: 276 QVTDFLSAAT-TTHISL--DHHSMTL---TPDEVKSLLLKY-LDCRPQDL---PREVLTT 325
Query: 236 HRAALTTETYGVGKRELLKANISRELLLMKRNSFVYIF--KLIQI--AFVAVVYMTLFLR 291
+ L+ + E ++ ++ +++ ++ KL I + + V L
Sbjct: 326 NPRRLSI----IA--ESIRDGLAT------WDNWKHVNCDKLTTIIESSLNV------LE 367
Query: 292 TKMHKDTVTDGGIFAGATFFAITMVNFNGFSEISMTIAKLPVFYKQRDFRFFPPWAYAIP 351
++ + FPP A
Sbjct: 368 PAEYRK------------------------------------MFD--RLSVFPPSA---- 385
Query: 352 SWILKIPVSFLEVAVWVFLSYYVVGYDSNAGRFFKQYALLLGVNQMAS----ALFRFIAV 407
IP L + +W + V N +Y+L+ + ++ +++ + V
Sbjct: 386 ----HIPTILLSL-IWFDVIKSDVMVVVN---KLHKYSLVEKQPKESTISIPSIYLELKV 437
Query: 408 TGRNMVV--ANTFGSFALLVLLSLGGFILSREDIKKWWKWAYWCSPLTYAQNAIVANEFL 465
N + + + I D Y+ S +
Sbjct: 438 KLENEYALHRSIVDHYNIPKTFDSDDLIPPYLD-------QYFYS-------------HI 477
Query: 466 GHSWKKFTQDSSETLGVQVLKSRGFFA----HEYWYWLGLGALFGFVLLLNFAYTLALTF 521
GH K TL V F H+ W G+ +LN T
Sbjct: 478 GHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGS------ILN-------TL 524
Query: 522 LDPFEKPRAVITEEIESNEQ 541
+ + I + E+
Sbjct: 525 QQ-LKFYKPYICDNDPKYER 543
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* Length = 247 | Back alignment and structure |
|---|
Score = 61.7 bits (151), Expect = 2e-10
Identities = 51/222 (22%), Positives = 88/222 (39%), Gaps = 72/222 (32%)
Query: 626 EDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLM-------DVLAGRKTGGYITGNITIS 678
D V+L+ ++ + + G + ++G SG+GK+TL G+ + I
Sbjct: 19 PDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQ---------VLID 69
Query: 679 GYPKK---------------QET--FARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPE 721
G+ Q+ R +I +++ + +P
Sbjct: 70 GHDLALADPNWLRRQVGVVLQDNVLLNR---------------SIIDNISLA-----NPG 109
Query: 722 VDSETRKMFIDEVMELVEL-------NPLRQ---SLVGLPGVSGLSTEQRKRLTIAVELV 771
+ E +V+ +L + LR+ ++VG G LS QR+R+ IA LV
Sbjct: 110 MSVE-------KVIYAAKLAGAHDFISELREGYNTIVGEQGAG-LSGGQRQRIAIARALV 161
Query: 772 ANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIH 813
NP I+ DE TS LD + ++MR + GRTV+ H
Sbjct: 162 NNPKILIFDEATSALDYESEHVIMRNMHKIC-KGRTVIIIAH 202
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 64.3 bits (156), Expect = 2e-10
Identities = 35/163 (21%), Positives = 64/163 (39%), Gaps = 28/163 (17%)
Query: 631 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARI 690
LLN + + G +G GK+TLM +A + G+P ++E R
Sbjct: 450 LLNKTQLRLKRARRYGICGPNGCGKSTLMRAIANGQVD----------GFPTQEE--CRT 497
Query: 691 SGYCEQN-DIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVG 749
Y E + D ++ + + E T++ I + + ++
Sbjct: 498 -VYVEHDIDGTHSDTSVLDFVF---------ESGVGTKEA-IKDKLIEFGFTDEMIAMP- 545
Query: 750 LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 792
+S LS + +L +A ++ N I+ +DEPT+ LD A
Sbjct: 546 ---ISALSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVA 585
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 43.5 bits (102), Expect = 5e-04
Identities = 14/35 (40%), Positives = 21/35 (60%)
Query: 753 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 787
+ GLS Q+ +L +A P +I +DEPT+ LD
Sbjct: 899 IRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLD 933
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} Length = 260 | Back alignment and structure |
|---|
Score = 61.0 bits (149), Expect = 3e-10
Identities = 58/242 (23%), Positives = 104/242 (42%), Gaps = 39/242 (16%)
Query: 603 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVL 662
++ F +V +S + L ++ G AL+G +G+GK+T+ +L
Sbjct: 17 NIEFSDVNFSYPKQTNHRT----------LKSINFFIPSGTTCALVGHTGSGKSTIAKLL 66
Query: 663 AGRKTGGY-ITGNITISGYPKKQETFA---RISGYCEQ-----NDIHSPFVTIYESLLFS 713
R Y G+I I G + I G Q N+ TI ++L+
Sbjct: 67 Y-RF---YDAEGDIKIGGKNVNKYNRNSIRSIIGIVPQDTILFNE------TIKYNILYG 116
Query: 714 AWLRLSPEVDSETRKMFIDE-VMELVELNPLR-QSLVGLPGVSGLSTEQRKRLTIAVELV 771
EV T+ + + + L P + ++VG G+ LS +R+R+ IA L+
Sbjct: 117 KLDATDEEVIKATKSAQLYDFIEAL----PKKWDTIVGNKGMK-LSGGERQRIAIARCLL 171
Query: 772 ANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKR 831
+P I+ DE TS LD++ + + V + + RT++ H+ S I A + + L+ +
Sbjct: 172 KDPKIVIFDEATSSLDSKTEYLFQKAVED-LRKNRTLIIIAHRLST-ISSA-ESIILLNK 228
Query: 832 GG 833
G
Sbjct: 229 GK 230
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} Length = 260 | Back alignment and structure |
|---|
Score = 42.9 bits (102), Expect = 3e-04
Identities = 28/102 (27%), Positives = 52/102 (50%), Gaps = 19/102 (18%)
Query: 61 DTMVGDEMIRGI--SGGQKKRVTTGEMMV-GPALALFMDEISTGLDSSTTFQIVNCLRQN 117
DT+VG+ +G+ SGG+++R+ ++ P + + DE ++ LDS T + + +
Sbjct: 146 DTIVGN---KGMKLSGGERQRIAIARCLLKDPKI-VIFDEATSSLDSKTEYLFQKAVE-D 200
Query: 118 IHINSGTAVI----SLLQPAPETYDLFDDIILLSDGQIVYQG 155
+ N +I S + A + IILL+ G+IV +G
Sbjct: 201 LRKNRTLIIIAHRLSTISSA-------ESIILLNKGKIVEKG 235
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* Length = 306 | Back alignment and structure |
|---|
Score = 61.9 bits (151), Expect = 3e-10
Identities = 60/222 (27%), Positives = 97/222 (43%), Gaps = 46/222 (20%)
Query: 632 LNGVSGAFRPGVLTALMGVSGAGKTTLM-------DVLAGRKTGGYITGNITISGYPKKQ 684
L VS PG AL+G SGAGK+T++ D+ +G I I G Q
Sbjct: 70 LQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGC---------IRIDGQDISQ 120
Query: 685 ETFA---RISGYCEQ-----NDIHSPFVTIYESLLFSAWLRLS---PEVDSETRKMFIDE 733
T A G Q ND TI +++ + R++ EV++ + I +
Sbjct: 121 VTQASLRSHIGVVPQDTVLFND------TIADNIRYG---RVTAGNDEVEAAAQAAGIHD 171
Query: 734 -VMELVELNPLR-QSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA 791
+M P ++ VG G+ LS +++R+ IA ++ P II +DE TS LD
Sbjct: 172 AIMAF----PEGYRTQVGERGLK-LSGGEKQRVAIARTILKAPGIILLDEATSALDTSNE 226
Query: 792 AIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGG 833
+ ++ V RT + H+ S + A D++ ++K G
Sbjct: 227 RAIQASL-AKVCANRTTIVVAHRLST-VVNA-DQILVIKDGC 265
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284 | Back alignment and structure |
|---|
Score = 62.4 bits (152), Expect = 8e-10
Identities = 58/227 (25%), Positives = 91/227 (40%), Gaps = 58/227 (25%)
Query: 632 LNGVSGAFRPGVLTALMGVSGAGKTTLM-------DVLAGRKTGGYITGNITISGYPKK- 683
L G++ + G AL+G SG GK+T + D L G ++I G +
Sbjct: 406 LKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGM---------VSIDGQDIRT 456
Query: 684 --------------QET--FARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETR 727
QE FA TI E++ + E++ +
Sbjct: 457 INVRYLREIIGVVSQEPVLFAT---------------TIAENIRYGREDVTMDEIEKAVK 501
Query: 728 KMFIDE-VMELVELNPLR-QSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 785
+ + +M+L P + +LVG G LS Q++R+ IA LV NP I+ +DE TS
Sbjct: 502 EANAYDFIMKL----PHQFDTLVGERGAQ-LSGGQKQRIAIARALVRNPKILLLDEATSA 556
Query: 786 LDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 832
LD + A+V + GRT + H+ S + A D + G
Sbjct: 557 LDTESEAVVQAALDK-AREGRTTIVIAHRLST-VRNA-DVIAGFDGG 600
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284 | Back alignment and structure |
|---|
Score = 53.9 bits (130), Expect = 3e-07
Identities = 57/220 (25%), Positives = 92/220 (41%), Gaps = 42/220 (19%)
Query: 632 LNGVSGAFRPGVLTALMGVSGAGKTTLM-------DVLAGRKTGGYITGNITISGYPKKQ 684
L G+S + G AL+G SG GK+T++ D +AG + + G KQ
Sbjct: 1049 LQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGS---------VFLDGKEIKQ 1099
Query: 685 ETFARISGYCEQNDIHS--PFV---TIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVE 739
+ Q I S P + +I E++ + R+ + I +
Sbjct: 1100 ---LNVQWLRAQLGIVSQEPILFDCSIAENIAYGDNSRVVSYEE-------IVRAAKEAN 1149
Query: 740 LNPLRQSL-------VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 792
++ SL VG G LS Q++R+ IA LV P I+ +DE TS LD +
Sbjct: 1150 IHQFIDSLPDKYNTRVGDKGTQ-LSGGQKQRIAIARALVRQPHILLLDEATSALDTESEK 1208
Query: 793 IVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 832
+V + + GRT + H+ S I A D + +++ G
Sbjct: 1209 VVQEAL-DKAREGRTCIVIAHRLST-IQNA-DLIVVIQNG 1245
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 Length = 243 | Back alignment and structure |
|---|
Score = 59.8 bits (146), Expect = 8e-10
Identities = 51/195 (26%), Positives = 85/195 (43%), Gaps = 37/195 (18%)
Query: 632 LNGVSGAFRPGVLTALMGVSGAGKTTLM-------DVLAGRKTGGYITGNITISGYPKKQ 684
L +S +P + A G SG GK+T+ AG ITI G P
Sbjct: 18 LRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGE---------ITIDGQPIDN 68
Query: 685 ETFA----RISGYCEQNDIHSPFV---TIYESLLFSAWLRLSP-EVDSETRKMFIDE-VM 735
+ +I G+ Q+ + TI E+L + + ++ F V
Sbjct: 69 ISLENWRSQI-GFVSQD----SAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVE 123
Query: 736 ELVE-LNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV 794
+ + LN + VG GV +S QR+RL IA + NP I+ +DE T+ LD+ + ++V
Sbjct: 124 NMPDQLN----TEVGERGVK-ISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMV 178
Query: 795 MRTVRNTVDTGRTVV 809
+ + +++ GRT +
Sbjct: 179 QKAL-DSLMKGRTTL 192
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* Length = 271 | Back alignment and structure |
|---|
Score = 57.2 bits (139), Expect = 8e-09
Identities = 45/213 (21%), Positives = 73/213 (34%), Gaps = 63/213 (29%)
Query: 632 LNGVSGAFRPGVLTALMGVSGAGKTTLM-------DVLAGRKTGGYITGNITISGYPKK- 683
L G++ PG +TAL+G +G+GK+T+ G+ + + G P
Sbjct: 35 LQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGK---------VLLDGEPLVQ 85
Query: 684 --------------QET--FARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETR 727
QE F R + E++ + + E +
Sbjct: 86 YDHHYLHTQVAAVGQEPLLFGR---------------SFRENIAYGLTRTPTMEEITAVA 130
Query: 728 KM-----FIDEVMELVELNPLR-QSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDE 781
FI P + VG G LS QR+ + +A L+ P ++ +D
Sbjct: 131 MESGAHDFI---SGF----PQGYDTEVGETGNQ-LSGGQRQAVALARALIRKPRLLILDN 182
Query: 782 PTSGLDARAAAIVMRTV-RNTVDTGRTVVCTIH 813
TS LDA V R + + RTV+
Sbjct: 183 ATSALDAGNQLRVQRLLYESPEWASRTVLLITQ 215
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 56.4 bits (137), Expect = 9e-09
Identities = 36/147 (24%), Positives = 72/147 (48%), Gaps = 17/147 (11%)
Query: 646 ALMGVSGAGKTTLMDVLAG--RKTGGYIT-GNITISGYPKKQETFARISGYCEQNDIHSP 702
L+G +GAGK+ ++++AG + G + I+ P ++ R G+ Q+ P
Sbjct: 28 VLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPER----RGIGFVPQDYALFP 83
Query: 703 FVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRK 762
+++Y ++ + LR V+ + R + E+ E + + L + LS +R+
Sbjct: 84 HLSVYRNIAYG--LRNVERVERDRR---VREMAEKLGIAHLLDRKP-----ARLSGGERQ 133
Query: 763 RLTIAVELVANPSIIFMDEPTSGLDAR 789
R+ +A LV P ++ +DEP S +D +
Sbjct: 134 RVALARALVIQPRLLLLDEPLSAVDLK 160
|
| >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} Length = 390 | Back alignment and structure |
|---|
Score = 55.9 bits (135), Expect = 5e-08
Identities = 43/209 (20%), Positives = 75/209 (35%), Gaps = 47/209 (22%)
Query: 626 EDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQE 685
+L +S + PG L+G +G+GK+TL+ G I I G
Sbjct: 32 GGNAIL-ENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLL---NTEGEIQIDGV----- 82
Query: 686 TFARISGYCEQNDIHS-------PFVTIY--ESLLFSAWLR--LSP---EVDSETRKMFI 731
S + + +FS R L P D E I
Sbjct: 83 ------------SWDSITLEQWRKAFGVIPQKVFIFSGTFRKNLDPNAAHSDQE-----I 125
Query: 732 DEVMELVELNPLRQSLVG------LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 785
+V + V L + + G + G LS ++ + +A +++ I+ +DEP++
Sbjct: 126 WKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAH 185
Query: 786 LDARAAAIVMRTVRNTVDTGRTVVCTIHQ 814
LD I+ RT++ TV+ +
Sbjct: 186 LDPVTYQIIRRTLKQAF-ADCTVILCEAR 213
|
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C Length = 366 | Back alignment and structure |
|---|
Score = 52.7 bits (127), Expect = 3e-07
Identities = 50/169 (29%), Positives = 77/169 (45%), Gaps = 30/169 (17%)
Query: 632 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GNITISGYPKKQETFA 688
LN VS G + ++G SGAGK+TL+ + R T G + ++ + + T A
Sbjct: 44 LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKA 103
Query: 689 RIS-GYCEQ--NDIHSPFVTIYESLLFSAWLRLS--PEVDSETRKMFIDEVMELVELNPL 743
R G Q N + S T++ ++ L L P+ + + R V EL+ L
Sbjct: 104 RRQIGMIFQHFNLLSS--RTVFGNVALP--LELDNTPKDEVKRR------VTELLSL--- 150
Query: 744 RQSLVGLPG-----VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 787
VGL S LS Q++R+ IA L +NP ++ D+ TS LD
Sbjct: 151 ----VGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDQATSALD 195
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* Length = 353 | Back alignment and structure |
|---|
Score = 52.3 bits (126), Expect = 5e-07
Identities = 46/179 (25%), Positives = 83/179 (46%), Gaps = 38/179 (21%)
Query: 628 KLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYI-------TGNITIS 678
K+V L+ V+ G ++G SGAGKTT M ++AG + G + N +
Sbjct: 17 KVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLI 76
Query: 679 GYPKKQET---FARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVM 735
P+ ++ F Q P +T +E++ F + + R ++EV
Sbjct: 77 VPPEDRKIGMVF--------QTWALYPNLTAFENIAFPLTNMKMSKEEIRKR---VEEVA 125
Query: 736 ELVELNPL-----RQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 789
++++++ + R+ LS Q++R+ +A LV +PS++ +DEP S LDAR
Sbjct: 126 KILDIHHVLNHFPRE----------LSGAQQQRVALARALVKDPSLLLLDEPFSNLDAR 174
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron transport, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} Length = 359 | Back alignment and structure |
|---|
Score = 52.2 bits (126), Expect = 5e-07
Identities = 46/168 (27%), Positives = 72/168 (42%), Gaps = 25/168 (14%)
Query: 632 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GNITISGYPKKQETFA 688
LN +S + PG + ++G SG GKTTL+ LAG + G I+ TI
Sbjct: 20 LNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVRE 79
Query: 689 RISGYCEQNDIHS--PFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQS 746
R GY Q P +T+Y ++ + R + ++EL
Sbjct: 80 RRLGYLVQE--GVLFPHLTVYRNIAYGLGNGKGRTAQERQR------IEAMLEL------ 125
Query: 747 LVGLPGVSG-----LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 789
G+ ++G LS Q++R +A L +P +I +DEP S LD +
Sbjct: 126 -TGISELAGRYPHELSGGQQQRAALARALAPDPELILLDEPFSALDEQ 172
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* Length = 290 | Back alignment and structure |
|---|
Score = 51.6 bits (124), Expect = 6e-07
Identities = 42/213 (19%), Positives = 88/213 (41%), Gaps = 44/213 (20%)
Query: 632 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYPKKQETFAR 689
L ++ G L A+ G +GAGKT+L+ ++ G + G I SG R
Sbjct: 54 LKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPS----EGKIKHSG---------R 100
Query: 690 ISGYCEQNDIHSPFV---TIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP-LR- 744
IS +C Q + ++ TI E+++ ++ D V++ +L +
Sbjct: 101 IS-FCSQ----NSWIMPGTIKENIIGVSY-------DEY----RYRSVIKACQLEEDISK 144
Query: 745 -----QSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 799
++G G++ LS QR R+++A + + + +D P LD + +
Sbjct: 145 FAEKDNIVLGEGGIT-LSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCV 203
Query: 800 NTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 832
+ +T + + ++ + D++ ++ G
Sbjct: 204 CKLMANKTRILVTSK--MEHLKKADKILILHEG 234
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} Length = 355 | Back alignment and structure |
|---|
Score = 52.2 bits (126), Expect = 6e-07
Identities = 42/161 (26%), Positives = 77/161 (47%), Gaps = 15/161 (9%)
Query: 632 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GNITISGYPKKQETFA 688
+ GVS R G + L+G SG+GKTT++ ++AG R T G + G ++ P ++
Sbjct: 31 VRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPPQK---- 86
Query: 689 RISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLV 748
R G QN +T+Y+++ F + P+ + + R + E++ + L
Sbjct: 87 RNVGLVFQNYALFQHMTVYDNVSFGLREKRVPKDEMDAR---VRELLRFMRLESYANRFP 143
Query: 749 GLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 789
LS Q++R+ +A L P ++ DEP + +D +
Sbjct: 144 -----HELSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQ 179
|
| >3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B Length = 339 | Back alignment and structure |
|---|
Score = 52.0 bits (124), Expect = 7e-07
Identities = 18/89 (20%), Positives = 33/89 (37%), Gaps = 8/89 (8%)
Query: 756 LSTEQRKRLTIAVEL------VANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVV 809
LS +R L +A L S++ +DEPT LD ++ + + V+
Sbjct: 249 LSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVI 308
Query: 810 CTIHQPSIDIFEAFDELFLMKRGGQEIYV 838
H ++ +A D + + V
Sbjct: 309 LVSHDE--ELKDAADHVIRISLENGSSKV 335
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A Length = 578 | Back alignment and structure |
|---|
Score = 52.6 bits (127), Expect = 7e-07
Identities = 48/191 (25%), Positives = 77/191 (40%), Gaps = 57/191 (29%)
Query: 626 EDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLM-------DVLAGRKTGGYITGNITIS 678
+++ +L ++ + G A +G+SG GK+TL+ DV +G+ I I
Sbjct: 351 DNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQ---------ILID 401
Query: 679 GYPKK---------------QETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSP--- 720
G+ K Q+ S T+ E++L R +
Sbjct: 402 GHNIKDFLTGSLRNQIGLVQQDNIL-FSD------------TVKENILLG---RPTATDE 445
Query: 721 EVDSETRKMFIDE-VMELVELNPLR-QSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIF 778
EV + + +M L P + VG GV LS Q++RL+IA + NP I+
Sbjct: 446 EVVEAAKMANAHDFIMNL----PQGYDTEVGERGV-KLSGGQKQRLSIARIFLNNPPILI 500
Query: 779 MDEPTSGLDAR 789
+DE TS LD
Sbjct: 501 LDEATSALDLE 511
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} Length = 582 | Back alignment and structure |
|---|
Score = 51.4 bits (124), Expect = 1e-06
Identities = 46/182 (25%), Positives = 78/182 (42%), Gaps = 39/182 (21%)
Query: 626 EDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLM-------DVLAGRKTGGYITGNITIS 678
++K L + VS + G AL+G SG+GK+T+ DV +G I +
Sbjct: 354 KEKPAL-SHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGS---------ICLD 403
Query: 679 GYPKKQETFA---RISGYCEQ-----NDIHSPFVTIYESLLFSAWLRLSPE-VDSETRKM 729
G+ + R Q ND TI ++ ++A + E ++ R+
Sbjct: 404 GHDVRDYKLTNLRRHFALVSQNVHLFND------TIANNIAYAAEGEYTREQIEQAARQA 457
Query: 730 FIDE-VMELVELNPLR-QSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 787
E + + P +++G G S LS QR+R+ IA L+ + ++ +DE TS LD
Sbjct: 458 HAMEFIENM----PQGLDTVIGENGTS-LSGGQRQRVAIARALLRDAPVLILDEATSALD 512
Query: 788 AR 789
Sbjct: 513 TE 514
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A Length = 229 | Back alignment and structure |
|---|
Score = 49.5 bits (119), Expect = 2e-06
Identities = 42/213 (19%), Positives = 84/213 (39%), Gaps = 43/213 (20%)
Query: 632 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYPKKQETFAR 689
L ++ G L A+ G +GAGKT+L+ ++ G + G I SG R
Sbjct: 24 LKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPS----EGKIKHSG---------R 70
Query: 690 ISGYCEQNDIHSPFV---TIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQS 746
IS +C Q ++ TI E+++F + V++ +L
Sbjct: 71 IS-FCSQ----FSWIMPGTIKENIIF----------GVSYDEYRYRSVIKACQLEEDISK 115
Query: 747 L-------VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 799
+G G++ LS QR R+++A + + + +D P LD + +
Sbjct: 116 FAEKDNIVLGEGGIT-LSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCV 174
Query: 800 NTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 832
+ +T + + ++ + D++ ++ G
Sbjct: 175 CKLMANKTRILVTSK--MEHLKKADKILILHEG 205
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} Length = 237 | Back alignment and structure |
|---|
Score = 49.5 bits (119), Expect = 2e-06
Identities = 46/215 (21%), Positives = 89/215 (41%), Gaps = 45/215 (20%)
Query: 632 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYPKKQETFAR 689
LNG++ + G L A++G G GK++L+ L K G++ I G
Sbjct: 21 LNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKV----EGHVAIKG---------S 67
Query: 690 ISGYCEQNDIHSPFV---TIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP-LR- 744
++ Y Q ++ ++ E++LF + + + V++ L P L
Sbjct: 68 VA-YVPQ----QAWIQNDSLRENILFG----------CQLEEPYYRSVIQACALLPDLEI 112
Query: 745 -----QSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV- 798
++ +G GV+ LS Q++R+++A + +N I D+P S +DA + V
Sbjct: 113 LPSGDRTEIGEKGVN-LSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVI 171
Query: 799 -RNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 832
+ +T + H + D + +M G
Sbjct: 172 GPKGMLKNKTRILVTHS--MSYLPQVDVIIVMSGG 204
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A Length = 582 | Back alignment and structure |
|---|
Score = 51.0 bits (123), Expect = 2e-06
Identities = 41/176 (23%), Positives = 73/176 (41%), Gaps = 38/176 (21%)
Query: 632 LNGVSGAFRPGVLTALMGVSGAGKTTLM-------DVLAGRKTGGYITGNITISGYPKKQ 684
L ++ G AL+G SG+GK+T+ D+ G I + G+ ++
Sbjct: 359 LRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGH---------ILMDGHDLRE 409
Query: 685 ETFA---RISGYCEQ-----NDIHSPFVTIYESLLFSAWLRLSPE-VDSETRKMFIDE-V 734
T A Q ND T+ ++ ++ S E ++ R + + +
Sbjct: 410 YTLASLRNQVALVSQNVHLFND------TVANNIAYARTEEYSREQIEEAARMAYAMDFI 463
Query: 735 MELVELNPLR-QSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 789
++ +++G GV LS QR+R+ IA L+ + I+ +DE TS LD
Sbjct: 464 NKM----DNGLDTIIGENGVL-LSGGQRQRIAIARALLRDSPILILDEATSALDTE 514
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 48.6 bits (117), Expect = 4e-06
Identities = 48/193 (24%), Positives = 79/193 (40%), Gaps = 28/193 (14%)
Query: 627 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GNITISGYPKK 683
+ + G+ G + L+G +GAGKTT + +AG R G I I+ P
Sbjct: 17 GAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAH 76
Query: 684 QETFARISGYCEQNDIHSP-----F--VTIYESLLFSAWLRLSPEVDSETRKMFIDEVME 736
I+ P F +T+YE+L+ A+ R D E K ++ +
Sbjct: 77 VINRMGIA--------LVPEGRRIFPELTVYENLMMGAYNRK----DKEGIKRDLEWIFS 124
Query: 737 LV-ELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM 795
L L + L G LS +++ L I L++ P ++ MDEP+ GL + V
Sbjct: 125 LFPRLKERLKQLGGT-----LSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVF 179
Query: 796 RTVRNTVDTGRTV 808
++ G T+
Sbjct: 180 EVIQKINQEGTTI 192
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 Length = 348 | Back alignment and structure |
|---|
Score = 49.1 bits (118), Expect = 5e-06
Identities = 37/167 (22%), Positives = 72/167 (43%), Gaps = 30/167 (17%)
Query: 632 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GNITISGYPKKQETFA 688
L+ +S G ++G +GAGKT ++++AG G I ++ ++
Sbjct: 16 LDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEK---- 71
Query: 689 RISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDE-VMELVELNPLRQSL 747
+ QN P + + ++L F +R+ +K+ + V++
Sbjct: 72 HDIAFVYQNYSLFPHMNVKKNLEFG--MRM--------KKIKDPKRVLDTARD------- 114
Query: 748 VGLPGVSG-----LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 789
+ + + LS +++R+ +A LV NP I+ +DEP S LD R
Sbjct: 115 LKIEHLLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPR 161
|
| >2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A* Length = 250 | Back alignment and structure |
|---|
Score = 48.3 bits (116), Expect = 5e-06
Identities = 55/199 (27%), Positives = 80/199 (40%), Gaps = 52/199 (26%)
Query: 626 EDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGY-IT-GNITISG---- 679
+ + +L GV+ G + ALMG +GAGK+TL +LAG Y + G I + G
Sbjct: 14 DGETIL-KGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDP--EYTVERGEILLDGENIL 70
Query: 680 -----------------YPKKQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEV 722
YP E + G VTI L + +L EV
Sbjct: 71 ELSPDERARKGLFLAFQYP--VE----VPG-----------VTIANFLRLALQAKLGREV 113
Query: 723 DSETRKMFIDEVMELVELNP--LRQSL-VGLPGVSGLSTEQRKRLTIAVELVANPSIIFM 779
+ + +EL++ + L + L G G G ++KR I LV P+ +
Sbjct: 114 GVAEFWTKVKKALELLDWDESYLSRYLNEGFSG--G----EKKRNEILQLLVLEPTYAVL 167
Query: 780 DEPTSGLDARAAAIVMRTV 798
DE SGLD A +V R V
Sbjct: 168 DETDSGLDIDALKVVARGV 186
|
| >2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} Length = 362 | Back alignment and structure |
|---|
Score = 47.2 bits (113), Expect = 2e-05
Identities = 52/183 (28%), Positives = 83/183 (45%), Gaps = 34/183 (18%)
Query: 627 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIT-GNITISGY----- 680
LN ++ + G AL+G SG+GK+TL+ +AG T G I
Sbjct: 14 GNFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYK---PTSGKIYFDEKDVTEL 70
Query: 681 -PKKQET---FARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVME 736
PK + F QN P +T+Y+++ F LR +P + + + + EV +
Sbjct: 71 PPKDRNVGLVF--------QNWALYPHMTVYKNIAFPLELRKAPREEIDKK---VREVAK 119
Query: 737 LVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA--RAAAIV 794
++ ++ L L P LS Q++R+ IA LV P ++ +DEP S LDA R
Sbjct: 120 MLHIDKL---LNRYP--WQLSGGQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLE--- 171
Query: 795 MRT 797
+R
Sbjct: 172 VRA 174
|
| >2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A Length = 267 | Back alignment and structure |
|---|
Score = 45.6 bits (109), Expect = 4e-05
Identities = 54/205 (26%), Positives = 82/205 (40%), Gaps = 68/205 (33%)
Query: 626 EDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGY-IT-GNITISG---- 679
EDK +L G+S PG + A+MG +G+GK+TL LAGR+ Y +T G + G
Sbjct: 31 EDKAIL-RGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGRE--DYEVTGGTVEFKGKDLL 87
Query: 680 -----------------YPKKQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLS--- 719
YP E I G V+ F L+ +
Sbjct: 88 ALSPEDRAGEGIFMAFQYP--VE----IPG-----------VSNQF---F---LQTALNA 124
Query: 720 -------PEVDSETRKMFIDEVMELVELNP--LRQSL-VGLPGVSGLSTEQRKRLTIAVE 769
+D + ++E + L+++ L +S+ VG G G ++KR I
Sbjct: 125 VRSYRGQETLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSG--G----EKKRNDILQM 178
Query: 770 LVANPSIIFMDEPTSGLDARAAAIV 794
V P + +DE SGLD A +V
Sbjct: 179 AVLEPELCILDESDSGLDIDALKVV 203
|
| >1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* Length = 372 | Back alignment and structure |
|---|
Score = 44.9 bits (107), Expect = 1e-04
Identities = 49/163 (30%), Positives = 75/163 (46%), Gaps = 34/163 (20%)
Query: 647 LMGVSGAGKTTLMDVLAGRKTGGYIT-GNITISGY------PKKQE---TFARISGYCEQ 696
L+G SG GKTT + ++AG + T G I PK + F Q
Sbjct: 42 LLGPSGCGKTTTLRMIAGLEE---PTEGRIYFGDRDVTYLPPKDRNISMVF--------Q 90
Query: 697 NDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGL 756
+ P +T+YE++ F ++ P+ + + R + EL+++ L L P L
Sbjct: 91 SYAVWPHMTVYENIAFPLKIKKFPKDEIDKR---VRWAAELLQIEEL---LNRYPA--QL 142
Query: 757 STEQRKRLTIAVELVANPSIIFMDEPTSGLDA--RAAAIVMRT 797
S QR+R+ +A +V P ++ MDEP S LDA R A MR
Sbjct: 143 SGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVA---MRA 182
|
| >2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} Length = 359 | Back alignment and structure |
|---|
Score = 44.5 bits (106), Expect = 2e-04
Identities = 54/188 (28%), Positives = 80/188 (42%), Gaps = 44/188 (23%)
Query: 627 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIT-GNITISGY----- 680
K+ ++GVS + G AL+G SG GKTT + +LAG T G I
Sbjct: 14 GKVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYK---PTSGEIYFDDVLVNDI 70
Query: 681 -PKKQET---FARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVME 736
PK +E F QN P +T++E++ F R + + E R + E+
Sbjct: 71 PPKYREVGMVF--------QNYALYPHMTVFENIAFPLRARRISKDEVEKR---VVEIAR 119
Query: 737 LVELNPL-----RQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA--R 789
+ ++ L Q LS Q++R+ +A LV P ++ DEP S LDA R
Sbjct: 120 KLLIDNLLDRKPTQ----------LSGGQQQRVALARALVKQPKVLLFDEPLSNLDANLR 169
Query: 790 AAAIVMRT 797
MR
Sbjct: 170 MI---MRA 174
|
| >1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B* Length = 148 | Back alignment and structure |
|---|
Score = 42.0 bits (99), Expect = 2e-04
Identities = 15/81 (18%), Positives = 31/81 (38%), Gaps = 11/81 (13%)
Query: 762 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFE 821
RL +++ L S++ +DEPT LD ++ + + V+ H ++ +
Sbjct: 70 FRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDE--ELKD 127
Query: 822 AFDELFLMKRGGQEIYVGPLG 842
A D + I +
Sbjct: 128 AADHV---------IRISLEN 139
|
| >1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A Length = 372 | Back alignment and structure |
|---|
Score = 42.2 bits (100), Expect = 8e-04
Identities = 49/164 (29%), Positives = 71/164 (43%), Gaps = 30/164 (18%)
Query: 647 LMGVSGAGKTTLMDVLAGRKTGGYIT-GNITISGYPKKQETFARISGYCE---------- 695
L+G SG GKTT + ++AG + + G I I K +
Sbjct: 34 LLGPSGCGKTTTLRMIAGLEE---PSRGQIYIGD---KLVADPEKGIFVPPKDRDIAMVF 87
Query: 696 QNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSG 755
Q+ P +T+Y+++ F LR P + + R + EV EL+ L L L P
Sbjct: 88 QSYALYPHMTVYDNIAFPLKLRKVPRQEIDQR---VREVAELLGLTEL---LNRKPR--E 139
Query: 756 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA--RAAAIVMRT 797
LS QR+R+ + +V P + MDEP S LDA R MR
Sbjct: 140 LSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVR---MRA 180
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 1202 | |||
| 4f4c_A | 1321 | Multidrug resistance protein PGP-1; ABC transporte | 100.0 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 100.0 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 100.0 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 100.0 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 100.0 | |
| 3tui_C | 366 | Methionine import ATP-binding protein METN; ABC-tr | 100.0 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 100.0 | |
| 3rlf_A | 381 | Maltose/maltodextrin import ATP-binding protein M; | 100.0 | |
| 3tif_A | 235 | Uncharacterized ABC transporter ATP-binding prote; | 100.0 | |
| 3fvq_A | 359 | Fe(3+) IONS import ATP-binding protein FBPC; nucle | 100.0 | |
| 3gfo_A | 275 | Cobalt import ATP-binding protein CBIO 1; structur | 100.0 | |
| 2olj_A | 263 | Amino acid ABC transporter; ABC domain, ATPase, hy | 100.0 | |
| 2pcj_A | 224 | ABC transporter, lipoprotein-releasing system ATP- | 100.0 | |
| 1b0u_A | 262 | Histidine permease; ABC transporter, transport pro | 100.0 | |
| 1z47_A | 355 | CYSA, putative ABC-transporter ATP-binding protein | 100.0 | |
| 1vpl_A | 256 | ABC transporter, ATP-binding protein; TM0544, stru | 100.0 | |
| 1g6h_A | 257 | High-affinity branched-chain amino acid transport | 100.0 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 100.0 | |
| 2yyz_A | 359 | Sugar ABC transporter, ATP-binding protein; sugar | 100.0 | |
| 2it1_A | 362 | 362AA long hypothetical maltose/maltodextrin trans | 100.0 | |
| 1g29_1 | 372 | MALK, maltose transport protein MALK; ATPase, acti | 100.0 | |
| 1v43_A | 372 | Sugar-binding transport ATP-binding protein; ATPas | 100.0 | |
| 4g1u_C | 266 | Hemin import ATP-binding protein HMUV; membrane tr | 100.0 | |
| 3ux8_A | 670 | Excinuclease ABC, A subunit; UVRA, nucleotide exci | 100.0 | |
| 1oxx_K | 353 | GLCV, glucose, ABC transporter, ATP binding protei | 100.0 | |
| 1ji0_A | 240 | ABC transporter; ATP binding protein, structural g | 100.0 | |
| 3d31_A | 348 | Sulfate/molybdate ABC transporter, ATP-binding pro | 100.0 | |
| 2d2e_A | 250 | SUFC protein; ABC-ATPase, SUF protein, 310-helix, | 100.0 | |
| 3nh6_A | 306 | ATP-binding cassette SUB-family B member 6, mitoc; | 100.0 | |
| 2yz2_A | 266 | Putative ABC transporter ATP-binding protein TM_0; | 100.0 | |
| 2onk_A | 240 | Molybdate/tungstate ABC transporter, ATP-binding p | 100.0 | |
| 2zu0_C | 267 | Probable ATP-dependent transporter SUFC; iron-sulf | 100.0 | |
| 2ihy_A | 279 | ABC transporter, ATP-binding protein; ATPase, ABC | 100.0 | |
| 3pih_A | 916 | Uvrabc system protein A; hydrolase, ABC ATPase, DN | 100.0 | |
| 2nq2_C | 253 | Hypothetical ABC transporter ATP-binding protein H | 100.0 | |
| 2r6f_A | 972 | Excinuclease ABC subunit A; UVRA, nucleotide excis | 100.0 | |
| 1sgw_A | 214 | Putative ABC transporter; structural genomics, P p | 100.0 | |
| 2qi9_C | 249 | Vitamin B12 import ATP-binding protein BTUD; inner | 100.0 | |
| 2ff7_A | 247 | Alpha-hemolysin translocation ATP-binding protein | 100.0 | |
| 2ixe_A | 271 | Antigen peptide transporter 1; ABC ATPase, hydrola | 100.0 | |
| 2vf7_A | 842 | UVRA2, excinuclease ABC, subunit A.; DNA-binding p | 100.0 | |
| 2ygr_A | 993 | Uvrabc system protein A; hydrolase, nucleotide exc | 100.0 | |
| 1mv5_A | 243 | LMRA, multidrug resistance ABC transporter ATP-bin | 100.0 | |
| 2pjz_A | 263 | Hypothetical protein ST1066; ATP binding protein, | 100.0 | |
| 2ghi_A | 260 | Transport protein; multidrug resistance protein, M | 100.0 | |
| 3gd7_A | 390 | Fusion complex of cystic fibrosis transmembrane co | 100.0 | |
| 3b5x_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 100.0 | |
| 3qf4_B | 598 | Uncharacterized ABC transporter ATP-binding prote | 100.0 | |
| 2yl4_A | 595 | ATP-binding cassette SUB-family B member 10, mitoc | 100.0 | |
| 2cbz_A | 237 | Multidrug resistance-associated protein 1; ABC pro | 100.0 | |
| 2pze_A | 229 | Cystic fibrosis transmembrane conductance regulat; | 100.0 | |
| 3qf4_A | 587 | ABC transporter, ATP-binding protein; multidrug tr | 100.0 | |
| 4a82_A | 578 | Cystic fibrosis transmembrane conductance regulat; | 100.0 | |
| 3b60_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 100.0 | |
| 4f4c_A | 1321 | Multidrug resistance protein PGP-1; ABC transporte | 100.0 | |
| 2bbs_A | 290 | Cystic fibrosis transmembrane conductance regulato | 100.0 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 100.0 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 99.97 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 99.97 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 99.97 | |
| 3ux8_A | 670 | Excinuclease ABC, A subunit; UVRA, nucleotide exci | 99.96 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 99.95 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 99.95 | |
| 2npi_A | 460 | Protein CLP1; CLP1-PCF11 complex, ATP binding, ter | 99.92 | |
| 4aby_A | 415 | DNA repair protein RECN; hydrolase, double strand | 99.91 | |
| 3b85_A | 208 | Phosphate starvation-inducible protein; PHOH2, ATP | 99.87 | |
| 3qf7_A | 365 | RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1. | 99.87 | |
| 4gp7_A | 171 | Metallophosphoesterase; polynucleotide kinase phos | 99.87 | |
| 3tui_C | 366 | Methionine import ATP-binding protein METN; ABC-tr | 99.87 | |
| 3nh6_A | 306 | ATP-binding cassette SUB-family B member 6, mitoc; | 99.86 | |
| 1e69_A | 322 | Chromosome segregation SMC protein; structural mai | 99.86 | |
| 3gfo_A | 275 | Cobalt import ATP-binding protein CBIO 1; structur | 99.85 | |
| 3fvq_A | 359 | Fe(3+) IONS import ATP-binding protein FBPC; nucle | 99.84 | |
| 1tq4_A | 413 | IIGP1, interferon-inducible GTPase; interferon gam | 99.84 | |
| 3rlf_A | 381 | Maltose/maltodextrin import ATP-binding protein M; | 99.84 | |
| 4g1u_C | 266 | Hemin import ATP-binding protein HMUV; membrane tr | 99.83 | |
| 2onk_A | 240 | Molybdate/tungstate ABC transporter, ATP-binding p | 99.83 | |
| 2olj_A | 263 | Amino acid ABC transporter; ABC domain, ATPase, hy | 99.83 | |
| 3tif_A | 235 | Uncharacterized ABC transporter ATP-binding prote; | 99.83 | |
| 1z47_A | 355 | CYSA, putative ABC-transporter ATP-binding protein | 99.83 | |
| 2pcj_A | 224 | ABC transporter, lipoprotein-releasing system ATP- | 99.83 | |
| 1g6h_A | 257 | High-affinity branched-chain amino acid transport | 99.83 | |
| 1b0u_A | 262 | Histidine permease; ABC transporter, transport pro | 99.83 | |
| 1znw_A | 207 | Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans | 99.83 | |
| 2it1_A | 362 | 362AA long hypothetical maltose/maltodextrin trans | 99.83 | |
| 2yyz_A | 359 | Sugar ABC transporter, ATP-binding protein; sugar | 99.82 | |
| 1ye8_A | 178 | Protein THEP1, hypothetical UPF0334 kinase-like pr | 99.82 | |
| 1g29_1 | 372 | MALK, maltose transport protein MALK; ATPase, acti | 99.82 | |
| 1v43_A | 372 | Sugar-binding transport ATP-binding protein; ATPas | 99.82 | |
| 1oxx_K | 353 | GLCV, glucose, ABC transporter, ATP binding protei | 99.82 | |
| 1vpl_A | 256 | ABC transporter, ATP-binding protein; TM0544, stru | 99.82 | |
| 3qf4_A | 587 | ABC transporter, ATP-binding protein; multidrug tr | 99.81 | |
| 4a82_A | 578 | Cystic fibrosis transmembrane conductance regulat; | 99.81 | |
| 3d31_A | 348 | Sulfate/molybdate ABC transporter, ATP-binding pro | 99.81 | |
| 3b5x_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 99.81 | |
| 2yl4_A | 595 | ATP-binding cassette SUB-family B member 10, mitoc | 99.81 | |
| 2nq2_C | 253 | Hypothetical ABC transporter ATP-binding protein H | 99.81 | |
| 2yz2_A | 266 | Putative ABC transporter ATP-binding protein TM_0; | 99.81 | |
| 1ji0_A | 240 | ABC transporter; ATP binding protein, structural g | 99.81 | |
| 3b60_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 99.81 | |
| 2ihy_A | 279 | ABC transporter, ATP-binding protein; ATPase, ABC | 99.81 | |
| 2zu0_C | 267 | Probable ATP-dependent transporter SUFC; iron-sulf | 99.8 | |
| 2d2e_A | 250 | SUFC protein; ABC-ATPase, SUF protein, 310-helix, | 99.8 | |
| 2ff7_A | 247 | Alpha-hemolysin translocation ATP-binding protein | 99.8 | |
| 3qf4_B | 598 | Uncharacterized ABC transporter ATP-binding prote | 99.79 | |
| 2ixe_A | 271 | Antigen peptide transporter 1; ABC ATPase, hydrola | 99.79 | |
| 2qi9_C | 249 | Vitamin B12 import ATP-binding protein BTUD; inner | 99.79 | |
| 2ghi_A | 260 | Transport protein; multidrug resistance protein, M | 99.79 | |
| 3sop_A | 270 | Neuronal-specific septin-3; hydrolase; HET: GDP; 2 | 99.78 | |
| 2vf7_A | 842 | UVRA2, excinuclease ABC, subunit A.; DNA-binding p | 99.78 | |
| 1mv5_A | 243 | LMRA, multidrug resistance ABC transporter ATP-bin | 99.78 | |
| 3b9q_A | 302 | Chloroplast SRP receptor homolog, alpha subunit CP | 99.78 | |
| 2pjz_A | 263 | Hypothetical protein ST1066; ATP binding protein, | 99.77 | |
| 3gd7_A | 390 | Fusion complex of cystic fibrosis transmembrane co | 99.77 | |
| 2v9p_A | 305 | Replication protein E1; AAA+ molecular motor, DNA | 99.77 | |
| 2cbz_A | 237 | Multidrug resistance-associated protein 1; ABC pro | 99.75 | |
| 2pt7_A | 330 | CAG-ALFA; ATPase, protein-protein complex, type IV | 99.75 | |
| 1z6g_A | 218 | Guanylate kinase; structural genomics, SGC, struct | 99.75 | |
| 3qkt_A | 339 | DNA double-strand break repair RAD50 ATPase; RECA- | 99.75 | |
| 2og2_A | 359 | Putative signal recognition particle receptor; nuc | 99.75 | |
| 2dpy_A | 438 | FLII, flagellum-specific ATP synthase; beta barrel | 99.74 | |
| 2o5v_A | 359 | DNA replication and repair protein RECF; ABC ATPas | 99.74 | |
| 2pze_A | 229 | Cystic fibrosis transmembrane conductance regulat; | 99.73 | |
| 1cr0_A | 296 | DNA primase/helicase; RECA-type protein fold, tran | 99.71 | |
| 2bbs_A | 290 | Cystic fibrosis transmembrane conductance regulato | 99.69 | |
| 2r6f_A | 972 | Excinuclease ABC subunit A; UVRA, nucleotide excis | 99.69 | |
| 1f2t_B | 148 | RAD50 ABC-ATPase; DNA double-strand break repair, | 99.68 | |
| 3aez_A | 312 | Pantothenate kinase; transferase, homodimer, COA b | 99.67 | |
| 3pih_A | 916 | Uvrabc system protein A; hydrolase, ABC ATPase, DN | 99.67 | |
| 3thx_A | 934 | DNA mismatch repair protein MSH2; ABC family ATPas | 99.67 | |
| 1tf7_A | 525 | KAIC; homohexamer, hexamer, circadian clock protei | 99.67 | |
| 2o8b_B | 1022 | DNA mismatch repair protein MSH6; DNA damage respo | 99.67 | |
| 2jeo_A | 245 | Uridine-cytidine kinase 1; UCK, transferase, ATP-b | 99.66 | |
| 1tf7_A | 525 | KAIC; homohexamer, hexamer, circadian clock protei | 99.65 | |
| 2obl_A | 347 | ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O | 99.64 | |
| 2ehv_A | 251 | Hypothetical protein PH0186; KAIC, RECA ATPase, un | 99.64 | |
| 2ygr_A | 993 | Uvrabc system protein A; hydrolase, nucleotide exc | 99.64 | |
| 2eyu_A | 261 | Twitching motility protein PILT; pilus retraction | 99.63 | |
| 1sgw_A | 214 | Putative ABC transporter; structural genomics, P p | 99.62 | |
| 3thx_B | 918 | DNA mismatch repair protein MSH3; ABC family ATPas | 99.61 | |
| 1f2t_B | 148 | RAD50 ABC-ATPase; DNA double-strand break repair, | 99.6 | |
| 4a74_A | 231 | DNA repair and recombination protein RADA; hydrola | 99.59 | |
| 2qnr_A | 301 | Septin-2, protein NEDD5; structural genomics conso | 99.58 | |
| 1rj9_A | 304 | FTSY, signal recognition protein; SRP-GTPase domai | 99.56 | |
| 3asz_A | 211 | Uridine kinase; cytidine phosphorylation, transfer | 99.56 | |
| 1ewq_A | 765 | DNA mismatch repair protein MUTS; multiple domains | 99.56 | |
| 1wb9_A | 800 | DNA mismatch repair protein MUTS; DNA-binding, ATP | 99.55 | |
| 1pzn_A | 349 | RAD51, DNA repair and recombination protein RAD51, | 99.52 | |
| 3jvv_A | 356 | Twitching mobility protein; hexameric P-loop ATPas | 99.51 | |
| 3qf7_A | 365 | RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1. | 99.5 | |
| 1nlf_A | 279 | Regulatory protein REPA; replicative DNA helicase | 99.5 | |
| 3szr_A | 608 | Interferon-induced GTP-binding protein MX1; interf | 99.49 | |
| 2i3b_A | 189 | HCR-ntpase, human cancer-related ntpase; AAA, ross | 99.48 | |
| 2w0m_A | 235 | SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus | 99.48 | |
| 2qag_C | 418 | Septin-7; cell cycle, cell division, GTP-binding, | 99.45 | |
| 1pui_A | 210 | ENGB, probable GTP-binding protein ENGB; structura | 99.44 | |
| 3kta_B | 173 | Chromosome segregation protein SMC; structural mai | 99.43 | |
| 3kta_B | 173 | Chromosome segregation protein SMC; structural mai | 99.41 | |
| 4aby_A | 415 | DNA repair protein RECN; hydrolase, double strand | 99.38 | |
| 4ad8_A | 517 | DNA repair protein RECN; DNA binding protein, ATPa | 99.38 | |
| 2qag_B | 427 | Septin-6, protein NEDD5; cell cycle, cell division | 99.37 | |
| 1s96_A | 219 | Guanylate kinase, GMP kinase; E.coli, dimer, SAD, | 99.36 | |
| 2cvh_A | 220 | DNA repair and recombination protein RADB; filamen | 99.36 | |
| 2o5v_A | 359 | DNA replication and repair protein RECF; ABC ATPas | 99.34 | |
| 2bdt_A | 189 | BH3686; alpha-beta protein, structural genomics, P | 99.34 | |
| 1zp6_A | 191 | Hypothetical protein ATU3015; alpha-beta protein., | 99.33 | |
| 1e69_A | 322 | Chromosome segregation SMC protein; structural mai | 99.3 | |
| 2ewv_A | 372 | Twitching motility protein PILT; pilus retraction | 99.3 | |
| 2npi_A | 460 | Protein CLP1; CLP1-PCF11 complex, ATP binding, ter | 99.3 | |
| 2gza_A | 361 | Type IV secretion system protein VIRB11; ATPase, h | 99.27 | |
| 3auy_A | 371 | DNA double-strand break repair RAD50 ATPase; DNA r | 99.26 | |
| 1lw7_A | 365 | Transcriptional regulator NADR; NMN, NMN adenylyl | 99.26 | |
| 1nij_A | 318 | Hypothetical protein YJIA; structural genomics, P- | 99.24 | |
| 2bbw_A | 246 | Adenylate kinase 4, AK4; nucleotide kinase, nucleo | 99.23 | |
| 2rcn_A | 358 | Probable GTPase ENGC; YJEQ, circularly permuted, G | 99.22 | |
| 4ad8_A | 517 | DNA repair protein RECN; DNA binding protein, ATPa | 99.2 | |
| 1ye8_A | 178 | Protein THEP1, hypothetical UPF0334 kinase-like pr | 99.19 | |
| 2yhs_A | 503 | FTSY, cell division protein FTSY; cell cycle, prot | 99.19 | |
| 1n0w_A | 243 | DNA repair protein RAD51 homolog 1; DNA repair, ho | 99.18 | |
| 2f1r_A | 171 | Molybdopterin-guanine dinucleotide biosynthesis pr | 99.17 | |
| 1htw_A | 158 | HI0065; nucleotide-binding fold, structural genomi | 99.17 | |
| 3auy_A | 371 | DNA double-strand break repair RAD50 ATPase; DNA r | 99.16 | |
| 3qkt_A | 339 | DNA double-strand break repair RAD50 ATPase; RECA- | 99.16 | |
| 1udx_A | 416 | The GTP-binding protein OBG; TGS domain, riken str | 99.15 | |
| 2kjq_A | 149 | DNAA-related protein; solution structure, NESG, st | 99.14 | |
| 1w1w_A | 430 | Structural maintenance of chromosome 1; cohesin, c | 99.14 | |
| 3ec2_A | 180 | DNA replication protein DNAC; helicase loader, rep | 99.12 | |
| 3e70_C | 328 | DPA, signal recognition particle receptor; FTSY, S | 99.1 | |
| 2qm8_A | 337 | GTPase/ATPase; G protein, G3E, metallochaperone, c | 99.1 | |
| 1odf_A | 290 | YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser | 99.09 | |
| 3lda_A | 400 | DNA repair protein RAD51; DNA binding protein, ATP | 99.01 | |
| 2v9p_A | 305 | Replication protein E1; AAA+ molecular motor, DNA | 98.99 | |
| 2yv5_A | 302 | YJEQ protein; hydrolase, GTPase, permutation, stru | 98.98 | |
| 2oap_1 | 511 | GSPE-2, type II secretion system protein; hexameri | 98.98 | |
| 4gp7_A | 171 | Metallophosphoesterase; polynucleotide kinase phos | 98.97 | |
| 1w1w_A | 430 | Structural maintenance of chromosome 1; cohesin, c | 98.97 | |
| 3c8u_A | 208 | Fructokinase; YP_612366.1, putative fructose trans | 98.94 | |
| 1sxj_E | 354 | Activator 1 40 kDa subunit; clamp loader, processi | 98.93 | |
| 1ni3_A | 392 | YCHF GTPase, YCHF GTP-binding protein; structural | 98.91 | |
| 1p9r_A | 418 | General secretion pathway protein E; bacterial typ | 98.9 | |
| 3b85_A | 208 | Phosphate starvation-inducible protein; PHOH2, ATP | 98.87 | |
| 1lvg_A | 198 | Guanylate kinase, GMP kinase; transferase; HET: AD | 98.8 | |
| 1t9h_A | 307 | YLOQ, probable GTPase ENGC; N-terminal beta-barrel | 98.79 | |
| 1in4_A | 334 | RUVB, holliday junction DNA helicase RUVB; AAA+-cl | 98.76 | |
| 2x8a_A | 274 | Nuclear valosin-containing protein-like; nuclear p | 98.74 | |
| 2dr3_A | 247 | UPF0273 protein PH0284; RECA superfamily ATPase, h | 98.71 | |
| 1sq5_A | 308 | Pantothenate kinase; P-loop, transferase; HET: PAU | 98.67 | |
| 1u0l_A | 301 | Probable GTPase ENGC; permutation, OB-fold, zinc-f | 98.65 | |
| 2r6a_A | 454 | DNAB helicase, replicative helicase; replication, | 98.64 | |
| 1vma_A | 306 | Cell division protein FTSY; TM0570, structural gen | 98.63 | |
| 1ls1_A | 295 | Signal recognition particle protein; FFH, SRP54, S | 98.57 | |
| 2zr9_A | 349 | Protein RECA, recombinase A; recombination, RECA m | 98.54 | |
| 1tq4_A | 413 | IIGP1, interferon-inducible GTPase; interferon gam | 98.54 | |
| 2ius_A | 512 | DNA translocase FTSK; nucleotide-binding, chromoso | 98.53 | |
| 1oix_A | 191 | RAS-related protein RAB-11A; small G protein, intr | 98.47 | |
| 3thx_A | 934 | DNA mismatch repair protein MSH2; ABC family ATPas | 98.46 | |
| 2px0_A | 296 | Flagellar biosynthesis protein FLHF; SRP GTPase, f | 98.43 | |
| 1iy2_A | 278 | ATP-dependent metalloprotease FTSH; AAA domain fol | 98.43 | |
| 3tr0_A | 205 | Guanylate kinase, GMP kinase; purines, pyrimidines | 98.42 | |
| 2pt7_A | 330 | CAG-ALFA; ATPase, protein-protein complex, type IV | 98.41 | |
| 1ixz_A | 254 | ATP-dependent metalloprotease FTSH; AAA domain fol | 98.4 | |
| 3euj_A | 483 | Chromosome partition protein MUKB, linker; MUKB, M | 98.38 | |
| 3k1j_A | 604 | LON protease, ATP-dependent protease LON; ATP-bind | 98.38 | |
| 1cr0_A | 296 | DNA primase/helicase; RECA-type protein fold, tran | 98.21 | |
| 2ce7_A | 476 | Cell division protein FTSH; metalloprotease; HET: | 98.19 | |
| 2f9l_A | 199 | RAB11B, member RAS oncogene family; RAB11B GTPase, | 98.14 | |
| 3hr8_A | 356 | Protein RECA; alpha and beta proteins (A/B, A+B), | 98.11 | |
| 3lnc_A | 231 | Guanylate kinase, GMP kinase; ALS collaborative cr | 98.11 | |
| 2xau_A | 773 | PRE-mRNA-splicing factor ATP-dependent RNA helica; | 98.07 | |
| 2qtf_A | 364 | Protein HFLX, GTP-binding protein; beta-alpha-barr | 98.04 | |
| 4eun_A | 200 | Thermoresistant glucokinase; putative sugar kinase | 98.02 | |
| 1qhl_A | 227 | Protein (cell division protein MUKB); SMC, chromos | 97.96 | |
| 1z6g_A | 218 | Guanylate kinase; structural genomics, SGC, struct | 97.96 | |
| 3thx_B | 918 | DNA mismatch repair protein MSH3; ABC family ATPas | 97.94 | |
| 4a1f_A | 338 | DNAB helicase, replicative DNA helicase; hydrolase | 97.92 | |
| 2o8b_B | 1022 | DNA mismatch repair protein MSH6; DNA damage respo | 97.92 | |
| 1nlf_A | 279 | Regulatory protein REPA; replicative DNA helicase | 97.9 | |
| 3nwj_A | 250 | ATSK2; P loop, shikimate, nucleoside monophosphate | 97.89 | |
| 2w0m_A | 235 | SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus | 97.87 | |
| 3sop_A | 270 | Neuronal-specific septin-3; hydrolase; HET: GDP; 2 | 97.87 | |
| 2e87_A | 357 | Hypothetical protein PH1320; GTP-binding, GTPase, | 97.86 | |
| 2i3b_A | 189 | HCR-ntpase, human cancer-related ntpase; AAA, ross | 97.85 | |
| 2cvh_A | 220 | DNA repair and recombination protein RADB; filamen | 97.83 | |
| 3b9q_A | 302 | Chloroplast SRP receptor homolog, alpha subunit CP | 97.81 | |
| 1znw_A | 207 | Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans | 97.81 | |
| 3aez_A | 312 | Pantothenate kinase; transferase, homodimer, COA b | 97.79 | |
| 1pzn_A | 349 | RAD51, DNA repair and recombination protein RAD51, | 97.79 | |
| 2dhr_A | 499 | FTSH; AAA+ protein, hexameric Zn metalloprotease, | 97.7 | |
| 1jjv_A | 206 | Dephospho-COA kinase; P-loop nucleotide-binding fo | 97.69 | |
| 3vaa_A | 199 | Shikimate kinase, SK; structural genomics, center | 97.67 | |
| 1zu4_A | 320 | FTSY; GTPase, signal recognition particle, SRP, re | 97.61 | |
| 3t34_A | 360 | Dynamin-related protein 1A, linker, dynamin-relat | 97.61 | |
| 2og2_A | 359 | Putative signal recognition particle receptor; nuc | 97.6 | |
| 4e22_A | 252 | Cytidylate kinase; P-loop, CMP/ATP binding, transf | 97.59 | |
| 2dpy_A | 438 | FLII, flagellum-specific ATP synthase; beta barrel | 97.55 | |
| 3kta_A | 182 | Chromosome segregation protein SMC; structural mai | 97.55 | |
| 1fnn_A | 389 | CDC6P, cell division control protein 6; ORC1, AAA | 97.52 | |
| 2dy1_A | 665 | Elongation factor G; translocation, GTP complex, s | 97.5 | |
| 2j41_A | 207 | Guanylate kinase; GMP, GMK, transferase, ATP-bindi | 97.49 | |
| 3a00_A | 186 | Guanylate kinase, GMP kinase; domain movement, dim | 97.47 | |
| 1ega_A | 301 | Protein (GTP-binding protein ERA); GTPase, RNA-bin | 97.47 | |
| 1kgd_A | 180 | CASK, peripheral plasma membrane CASK; maguk, guan | 97.46 | |
| 3asz_A | 211 | Uridine kinase; cytidine phosphorylation, transfer | 97.45 | |
| 3bh0_A | 315 | DNAB-like replicative helicase; ATPase, replicatio | 97.45 | |
| 3b9p_A | 297 | CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc | 97.43 | |
| 2vp4_A | 230 | Deoxynucleoside kinase; ATP-binding, DNA synthesis | 97.41 | |
| 4a74_A | 231 | DNA repair and recombination protein RADA; hydrola | 97.41 | |
| 1ewq_A | 765 | DNA mismatch repair protein MUTS; multiple domains | 97.4 | |
| 3uie_A | 200 | Adenylyl-sulfate kinase 1, chloroplastic; rossmann | 97.36 | |
| 1wb9_A | 800 | DNA mismatch repair protein MUTS; DNA-binding, ATP | 97.36 | |
| 1v5w_A | 343 | DMC1, meiotic recombination protein DMC1/LIM15 hom | 97.34 | |
| 2ehv_A | 251 | Hypothetical protein PH0186; KAIC, RECA ATPase, un | 97.33 | |
| 1svm_A | 377 | Large T antigen; AAA+ fold, viral protein; HET: AT | 97.31 | |
| 2obl_A | 347 | ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O | 97.28 | |
| 2eyu_A | 261 | Twitching motility protein PILT; pilus retraction | 97.25 | |
| 3tau_A | 208 | Guanylate kinase, GMP kinase; structural genomics, | 97.24 | |
| 2z4s_A | 440 | Chromosomal replication initiator protein DNAA; AA | 97.2 | |
| 1pui_A | 210 | ENGB, probable GTP-binding protein ENGB; structura | 97.19 | |
| 2z43_A | 324 | DNA repair and recombination protein RADA; archaea | 97.17 | |
| 2qt1_A | 207 | Nicotinamide riboside kinase 1; non-protein kinase | 97.17 | |
| 2q6t_A | 444 | DNAB replication FORK helicase; hydrolase; 2.90A { | 97.12 | |
| 3ice_A | 422 | Transcription termination factor RHO; transcriptio | 97.06 | |
| 3ney_A | 197 | 55 kDa erythrocyte membrane protein; structural ge | 97.04 | |
| 1f2t_A | 149 | RAD50 ABC-ATPase; DNA double-strand break repair, | 97.01 | |
| 1knq_A | 175 | Gluconate kinase; ALFA/beta structure, transferase | 96.98 | |
| 3tqc_A | 321 | Pantothenate kinase; biosynthesis of cofactors, pr | 96.95 | |
| 3kl4_A | 433 | SRP54, signal recognition 54 kDa protein; signal r | 96.88 | |
| 2qnr_A | 301 | Septin-2, protein NEDD5; structural genomics conso | 96.88 | |
| 2qby_A | 386 | CDC6 homolog 1, cell division control protein 6 ho | 96.85 | |
| 1kag_A | 173 | SKI, shikimate kinase I; transferase, structural g | 96.85 | |
| 3llm_A | 235 | ATP-dependent RNA helicase A; alpha-beta-alpha, st | 96.84 | |
| 3cf0_A | 301 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 96.81 | |
| 1ypw_A | 806 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 96.79 | |
| 2f1r_A | 171 | Molybdopterin-guanine dinucleotide biosynthesis pr | 96.73 | |
| 1rz3_A | 201 | Hypothetical protein rbstp0775; MCSG, structural g | 96.72 | |
| 3jvv_A | 356 | Twitching mobility protein; hexameric P-loop ATPas | 96.66 | |
| 1odf_A | 290 | YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser | 96.58 | |
| 3lxx_A | 239 | GTPase IMAP family member 4; structural genomics c | 96.53 | |
| 1u94_A | 356 | RECA protein, recombinase A; homologous recombinat | 96.46 | |
| 4eaq_A | 229 | DTMP kinase, thymidylate kinase; structural genomi | 96.45 | |
| 2gj8_A | 172 | MNME, tRNA modification GTPase TRME; G-domain dime | 96.43 | |
| 3qks_A | 203 | DNA double-strand break repair RAD50 ATPase; RECA- | 96.4 | |
| 2b8t_A | 223 | Thymidine kinase; deoxyribonucleoside kinase, zinc | 96.37 | |
| 3m6a_A | 543 | ATP-dependent protease LA 1; alpha, beta, ATP-bind | 96.35 | |
| 2jeo_A | 245 | Uridine-cytidine kinase 1; UCK, transferase, ATP-b | 96.33 | |
| 3h4m_A | 285 | Proteasome-activating nucleotidase; ATPase, PAN, A | 96.3 | |
| 3cr8_A | 552 | Sulfate adenylyltranferase, adenylylsulfate kinase | 96.28 | |
| 2pez_A | 179 | Bifunctional 3'-phosphoadenosine 5'- phosphosulfat | 96.27 | |
| 1m2o_B | 190 | GTP-binding protein SAR1, GTP binding protein; zin | 96.24 | |
| 2p67_A | 341 | LAO/AO transport system kinase; ARGK, structural G | 96.24 | |
| 3bgw_A | 444 | DNAB-like replicative helicase; ATPase, replicatio | 96.21 | |
| 1cke_A | 227 | CK, MSSA, protein (cytidine monophosphate kinase); | 96.19 | |
| 1y63_A | 184 | LMAJ004144AAA protein; structural genomics, protei | 96.19 | |
| 1l8q_A | 324 | Chromosomal replication initiator protein DNAA; AA | 96.19 | |
| 3szr_A | 608 | Interferon-induced GTP-binding protein MX1; interf | 96.15 | |
| 1mky_A | 439 | Probable GTP-binding protein ENGA; GTPase, DER, KH | 96.15 | |
| 2qor_A | 204 | Guanylate kinase; phosphotransferase, purine metab | 96.09 | |
| 1n0w_A | 243 | DNA repair protein RAD51 homolog 1; DNA repair, ho | 95.99 | |
| 1f6b_A | 198 | SAR1; gtpases, N-terminal helix, Mg-containing com | 95.92 | |
| 2qag_A | 361 | Septin-2, protein NEDD5; cell cycle, cell division | 95.88 | |
| 3ec2_A | 180 | DNA replication protein DNAC; helicase loader, rep | 95.87 | |
| 3d8b_A | 357 | Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s | 95.86 | |
| 2ewv_A | 372 | Twitching motility protein PILT; pilus retraction | 95.76 | |
| 2i1q_A | 322 | DNA repair and recombination protein RADA; ATPase, | 95.73 | |
| 2www_A | 349 | Methylmalonic aciduria type A protein, mitochondri | 95.7 | |
| 2ga8_A | 359 | Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn | 95.68 | |
| 2if2_A | 204 | Dephospho-COA kinase; alpha-beta protein, structur | 95.68 | |
| 2v1u_A | 387 | Cell division control protein 6 homolog; DNA repli | 95.64 | |
| 2bdt_A | 189 | BH3686; alpha-beta protein, structural genomics, P | 95.55 | |
| 2yvu_A | 186 | Probable adenylyl-sulfate kinase; transferase, str | 95.48 | |
| 1lw7_A | 365 | Transcriptional regulator NADR; NMN, NMN adenylyl | 95.45 | |
| 1np6_A | 174 | Molybdopterin-guanine dinucleotide biosynthesis pr | 95.44 | |
| 2wjg_A | 188 | FEOB, ferrous iron transport protein B homolog; me | 95.4 | |
| 2qz4_A | 262 | Paraplegin; AAA+, SPG7, protease, ADP, structural | 95.39 | |
| 1m7g_A | 211 | Adenylylsulfate kinase; APS kinase, transferase, s | 95.36 | |
| 2wji_A | 165 | Ferrous iron transport protein B homolog; membrane | 95.34 | |
| 3cm0_A | 186 | Adenylate kinase; ATP-binding, cytoplasm, nucleoti | 95.34 | |
| 1xwi_A | 322 | SKD1 protein; VPS4B, AAA ATPase, protein transport | 95.29 | |
| 3t61_A | 202 | Gluconokinase; PSI-biology, structural genomics, p | 95.26 | |
| 1q57_A | 503 | DNA primase/helicase; dntpase, DNA replication, tr | 95.21 | |
| 1sxj_C | 340 | Activator 1 40 kDa subunit; clamp loader, processi | 95.1 | |
| 1xp8_A | 366 | RECA protein, recombinase A; recombination, radior | 95.06 | |
| 1qhx_A | 178 | CPT, protein (chloramphenicol phosphotransferase); | 95.02 | |
| 3kb2_A | 173 | SPBC2 prophage-derived uncharacterized protein YOR | 95.0 | |
| 3r20_A | 233 | Cytidylate kinase; structural genomics, seattle st | 94.94 | |
| 1q3t_A | 236 | Cytidylate kinase; nucleotide monophosphate kinase | 94.93 | |
| 2ohf_A | 396 | Protein OLA1, GTP-binding protein 9; ATPase, GTPas | 94.9 | |
| 2zej_A | 184 | Dardarin, leucine-rich repeat kinase 2; parkinson' | 94.87 | |
| 3io5_A | 333 | Recombination and repair protein; storage dimer, i | 94.83 | |
| 2qag_C | 418 | Septin-7; cell cycle, cell division, GTP-binding, | 94.78 | |
| 1lv7_A | 257 | FTSH; alpha/beta domain, four helix bundle, hydrol | 94.75 | |
| 2p5t_B | 253 | PEZT; postsegregational killing system, phosphoryl | 94.64 | |
| 2rhm_A | 193 | Putative kinase; P-loop containing nucleoside trip | 94.64 | |
| 1kht_A | 192 | Adenylate kinase; phosphotransferase, signaling pr | 94.58 | |
| 1ex7_A | 186 | Guanylate kinase; substrate-induced FIT, domain mo | 94.57 | |
| 1j8m_F | 297 | SRP54, signal recognition 54 kDa protein; signalin | 94.55 | |
| 2ffh_A | 425 | Protein (FFH); SRP54, signal recognition particle, | 94.54 | |
| 1xx6_A | 191 | Thymidine kinase; NESG, northeast structural genom | 94.36 | |
| 2ze6_A | 253 | Isopentenyl transferase; crown GALL tumor, cytokin | 94.32 | |
| 3trf_A | 185 | Shikimate kinase, SK; amino acid biosynthesis, tra | 94.31 | |
| 3lw7_A | 179 | Adenylate kinase related protein (ADKA-like); AMP, | 94.23 | |
| 1vht_A | 218 | Dephospho-COA kinase; structural genomics, transfe | 94.22 | |
| 3iij_A | 180 | Coilin-interacting nuclear ATPase protein; alpha a | 94.16 | |
| 2v54_A | 204 | DTMP kinase, thymidylate kinase; nucleotide biosyn | 94.09 | |
| 1sxj_E | 354 | Activator 1 40 kDa subunit; clamp loader, processi | 94.07 | |
| 2ius_A | 512 | DNA translocase FTSK; nucleotide-binding, chromoso | 94.04 | |
| 1gvn_B | 287 | Zeta; postsegregational killing system, plasmid; 1 | 94.0 | |
| 2jaq_A | 205 | Deoxyguanosine kinase; transferase, deoxyribonucle | 93.98 | |
| 2plr_A | 213 | DTMP kinase, probable thymidylate kinase; TMP-bind | 93.96 | |
| 2bbw_A | 246 | Adenylate kinase 4, AK4; nucleotide kinase, nucleo | 93.94 | |
| 2wwf_A | 212 | Thymidilate kinase, putative; transferase, malaria | 93.91 | |
| 1lvg_A | 198 | Guanylate kinase, GMP kinase; transferase; HET: AD | 93.81 | |
| 1ly1_A | 181 | Polynucleotide kinase; PNK, phosphatase, transfera | 93.79 | |
| 1ko7_A | 314 | HPR kinase/phosphatase; protein kinase, phosphotra | 93.79 | |
| 2c95_A | 196 | Adenylate kinase 1; transferase, AP4A, nucleotide | 93.77 | |
| 1xjc_A | 169 | MOBB protein homolog; structural genomics, midwest | 93.76 | |
| 2j9r_A | 214 | Thymidine kinase; TK1, DNK, lasso, transferase, AT | 93.76 | |
| 1via_A | 175 | Shikimate kinase; structural genomics, transferase | 93.73 | |
| 3lda_A | 400 | DNA repair protein RAD51; DNA binding protein, ATP | 93.73 | |
| 1rj9_A | 304 | FTSY, signal recognition protein; SRP-GTPase domai | 93.69 | |
| 3k53_A | 271 | Ferrous iron transport protein B; GTPase fold, hel | 93.65 | |
| 1gtv_A | 214 | TMK, thymidylate kinase; transferase, transferase | 93.63 | |
| 1nn5_A | 215 | Similar to deoxythymidylate kinase (thymidylate K; | 93.62 | |
| 1uf9_A | 203 | TT1252 protein; P-loop, nucleotide binding domain, | 93.59 | |
| 4b4t_K | 428 | 26S protease regulatory subunit 6B homolog; hydrol | 93.57 | |
| 3co5_A | 143 | Putative two-component system transcriptional RES | 93.57 | |
| 3vfd_A | 389 | Spastin; ATPase, microtubule severing, hydrolase; | 93.47 | |
| 3cmw_A | 1706 | Protein RECA, recombinase A; homologous recombinat | 93.47 | |
| 2kjq_A | 149 | DNAA-related protein; solution structure, NESG, st | 93.46 | |
| 2bwj_A | 199 | Adenylate kinase 5; phosphoryl transfer reaction, | 93.46 | |
| 4b4t_I | 437 | 26S protease regulatory subunit 4 homolog; hydrola | 93.41 | |
| 1tev_A | 196 | UMP-CMP kinase; ploop, NMP binding region, LID reg | 93.36 | |
| 1nks_A | 194 | Adenylate kinase; thermophilic, transferase; HET: | 93.33 | |
| 2r6a_A | 454 | DNAB helicase, replicative helicase; replication, | 93.14 | |
| 1udx_A | 416 | The GTP-binding protein OBG; TGS domain, riken str | 93.13 | |
| 1aky_A | 220 | Adenylate kinase; ATP:AMP phosphotransferase, myok | 93.09 | |
| 4b4t_J | 405 | 26S protease regulatory subunit 8 homolog; hydrola | 93.01 | |
| 2vli_A | 183 | Antibiotic resistance protein; transferase, tunica | 92.98 | |
| 2z0h_A | 197 | DTMP kinase, thymidylate kinase; ATP-binding, nucl | 92.98 | |
| 3q72_A | 166 | GTP-binding protein RAD; G-domain, CAV2 beta, sign | 92.94 | |
| 3b1v_A | 272 | Ferrous iron uptake transporter protein B; G prote | 92.87 | |
| 2orv_A | 234 | Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2 | 92.82 | |
| 2ged_A | 193 | SR-beta, signal recognition particle receptor beta | 92.75 | |
| 1zd8_A | 227 | GTP:AMP phosphotransferase mitochondrial; ATP:AMP | 92.74 | |
| 2nzj_A | 175 | GTP-binding protein REM 1; GDP/GTP binding, GTP hy | 92.7 | |
| 1fzq_A | 181 | ADP-ribosylation factor-like protein 3; protein-GD | 92.66 | |
| 1z2a_A | 168 | RAS-related protein RAB-23; RAB GTPase, vesicular | 92.61 | |
| 2erx_A | 172 | GTP-binding protein DI-RAS2; GTP hydrolysis, trans | 92.6 | |
| 3ake_A | 208 | Cytidylate kinase; CMP kinase, CMP complex, open c | 92.58 | |
| 2qmh_A | 205 | HPR kinase/phosphorylase; V267F mutation, ATP-bind | 92.51 | |
| 2cdn_A | 201 | Adenylate kinase; phosphoryl transfer, associative | 92.51 | |
| 3lxw_A | 247 | GTPase IMAP family member 1; immunity, structural | 92.5 | |
| 3q85_A | 169 | GTP-binding protein REM 2; G-domain, CAV2 beta, si | 92.5 | |
| 3fb4_A | 216 | Adenylate kinase; psychrophIle, phosphotransferase | 92.43 | |
| 1zuh_A | 168 | Shikimate kinase; alpha-beta protein, transferase; | 92.42 | |
| 3tw8_B | 181 | RAS-related protein RAB-35; longin domain, RAB GTP | 92.41 | |
| 3a4m_A | 260 | L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m | 92.36 | |
| 2dyk_A | 161 | GTP-binding protein; GTPase, ribosome-binding prot | 92.35 | |
| 3ihw_A | 184 | Centg3; RAS, centaurin, GTPase, structural genomic | 92.34 | |
| 1kao_A | 167 | RAP2A; GTP-binding protein, small G protein, GDP, | 92.33 | |
| 1ukz_A | 203 | Uridylate kinase; transferase; HET: ADP AMP; 1.90A | 92.32 | |
| 2ce2_X | 166 | GTPase HRAS; signaling protein, guanine nucleotide | 92.32 | |
| 1u8z_A | 168 | RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH | 92.27 | |
| 1zak_A | 222 | Adenylate kinase; ATP:AMP-phosphotransferase, tran | 92.27 | |
| 2pbr_A | 195 | DTMP kinase, thymidylate kinase; transferase, nucl | 92.27 | |
| 1svi_A | 195 | GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro | 92.22 | |
| 1e6c_A | 173 | Shikimate kinase; phosphoryl transfer, ADP, shikim | 92.19 | |
| 3c8u_A | 208 | Fructokinase; YP_612366.1, putative fructose trans | 92.12 | |
| 1z0j_A | 170 | RAB-22, RAS-related protein RAB-22A; RAB GTPase, R | 92.12 | |
| 3dl0_A | 216 | Adenylate kinase; phosphotransferase, zinc coordin | 92.12 | |
| 1jal_A | 363 | YCHF protein; nucleotide-binding fold, structural | 92.12 | |
| 2grj_A | 192 | Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp | 92.11 | |
| 1z08_A | 170 | RAS-related protein RAB-21; RAB GTPase, vesicular | 92.1 | |
| 1g16_A | 170 | RAS-related protein SEC4; G protein RAB, signaling | 92.09 | |
| 2pt5_A | 168 | Shikimate kinase, SK; aromatic amino acid biosynth | 92.06 | |
| 1qf9_A | 194 | UMP/CMP kinase, protein (uridylmonophosphate/cytid | 92.06 | |
| 1ek0_A | 170 | Protein (GTP-binding protein YPT51); vesicular tra | 92.06 | |
| 1c1y_A | 167 | RAS-related protein RAP-1A; GTP-binding proteins, | 92.05 | |
| 2lkc_A | 178 | Translation initiation factor IF-2; NMR {Geobacill | 92.03 | |
| 1wms_A | 177 | RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p | 92.02 | |
| 3tlx_A | 243 | Adenylate kinase 2; structural genomics, structura | 92.01 | |
| 3cmw_A | 1706 | Protein RECA, recombinase A; homologous recombinat | 92.01 | |
| 3pqc_A | 195 | Probable GTP-binding protein ENGB; rossmann fold, | 91.99 | |
| 2iyv_A | 184 | Shikimate kinase, SK; transferase, aromatic amino | 91.98 | |
| 1moz_A | 183 | ARL1, ADP-ribosylation factor-like protein 1; GTP- | 91.94 | |
| 1ky3_A | 182 | GTP-binding protein YPT7P; vesicular traffic, GTP | 91.93 | |
| 2cxx_A | 190 | Probable GTP-binding protein ENGB; structural geno | 91.92 | |
| 2dr3_A | 247 | UPF0273 protein PH0284; RECA superfamily ATPase, h | 91.9 | |
| 3iby_A | 256 | Ferrous iron transport protein B; G protein, G dom | 91.83 | |
| 1wf3_A | 301 | GTP-binding protein; GTPase, riken structural geno | 91.8 | |
| 3cmu_A | 2050 | Protein RECA, recombinase A; homologous recombinat | 91.79 | |
| 2fn4_A | 181 | P23, RAS-related protein R-RAS; GDP/GTP binding, G | 91.78 | |
| 3t5d_A | 274 | Septin-7; GTP-binding protein, cytoskeleton, signa | 91.73 | |
| 3v9p_A | 227 | DTMP kinase, thymidylate kinase; ssgcid, STRU geno | 91.71 | |
| 1r2q_A | 170 | RAS-related protein RAB-5A; GTPase, GNP, atomic re | 91.65 | |
| 2hxs_A | 178 | RAB-26, RAS-related protein RAB-28; GTPase, signal | 91.63 | |
| 4ag6_A | 392 | VIRB4 ATPase, type IV secretory pathway VIRB4 comp | 91.6 | |
| 3cbq_A | 195 | GTP-binding protein REM 2; FLJ38964A, structural g | 91.59 | |
| 2oil_A | 193 | CATX-8, RAS-related protein RAB-25; G-protein, GDP | 91.57 | |
| 1upt_A | 171 | ARL1, ADP-ribosylation factor-like protein 1; hydr | 91.54 | |
| 4dsu_A | 189 | GTPase KRAS, isoform 2B; small G-protein, signalin | 91.54 | |
| 3iev_A | 308 | GTP-binding protein ERA; ERA, GTPase, KH domain, a | 91.5 | |
| 1r8s_A | 164 | ADP-ribosylation factor 1; protein transport/excha | 91.48 | |
| 2dby_A | 368 | GTP-binding protein; GDP, structural genomics, NPP | 91.47 | |
| 4edh_A | 213 | DTMP kinase, thymidylate kinase; structural genomi | 91.45 | |
| 1uj2_A | 252 | Uridine-cytidine kinase 2; alpha/beta mononucleoti | 91.43 | |
| 1a7j_A | 290 | Phosphoribulokinase; transferase, calvin cycle; 2. | 91.41 | |
| 3bc1_A | 195 | RAS-related protein RAB-27A; RAB27, GTPase, RAB, s | 91.39 | |
| 3clv_A | 208 | RAB5 protein, putative; malaria, GTPase, structura | 91.34 | |
| 3bos_A | 242 | Putative DNA replication factor; P-loop containing | 91.33 | |
| 2f7s_A | 217 | C25KG, RAS-related protein RAB-27B; G-protein, str | 91.26 | |
| 2g6b_A | 180 | RAS-related protein RAB-26; G-protein, GTP analogu | 91.24 | |
| 2y8e_A | 179 | RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti | 91.23 | |
| 1ksh_A | 186 | ARF-like protein 2; small GTPase, small GTP-bindin | 91.17 | |
| 3a1s_A | 258 | Iron(II) transport protein B; FEOB, iron transport | 91.15 | |
| 3t1o_A | 198 | Gliding protein MGLA; G domain containing protein, | 91.13 | |
| 2xb4_A | 223 | Adenylate kinase; ATP-binding, nucleotide-binding, | 91.12 | |
| 2f6r_A | 281 | COA synthase, bifunctional coenzyme A synthase; 18 | 91.12 | |
| 3umf_A | 217 | Adenylate kinase; rossmann fold, transferase; 2.05 | 91.11 | |
| 3con_A | 190 | GTPase NRAS; structural genomics consortium, SGC, | 91.09 | |
| 1z0f_A | 179 | RAB14, member RAS oncogene family; RAB GTPase, ves | 91.08 | |
| 2a9k_A | 187 | RAS-related protein RAL-A; bacterial ADP-ribosyltr | 91.07 | |
| 3be4_A | 217 | Adenylate kinase; malaria, cryptosporidium parvum | 91.04 | |
| 2efe_B | 181 | Small GTP-binding protein-like; GEF, GTPase, VPS9, | 90.92 | |
| 3i8s_A | 274 | Ferrous iron transport protein B; GTPase, GPCR, ir | 90.92 | |
| 1nrj_B | 218 | SR-beta, signal recognition particle receptor beta | 90.91 | |
| 2il1_A | 192 | RAB12; G-protein, GDP, GTPase, predicted, structur | 90.89 | |
| 2xtp_A | 260 | GTPase IMAP family member 2; immune system, G prot | 90.87 | |
| 2bme_A | 186 | RAB4A, RAS-related protein RAB4A; GTP-binding prot | 90.84 | |
| 3lv8_A | 236 | DTMP kinase, thymidylate kinase; structural genomi | 90.84 | |
| 2gf9_A | 189 | RAS-related protein RAB-3D; G-protein, structural | 90.83 | |
| 3a8t_A | 339 | Adenylate isopentenyltransferase; rossmann fold pr | 90.78 | |
| 1m7b_A | 184 | RND3/RHOE small GTP-binding protein; small GTPase, | 90.75 | |
| 2bov_A | 206 | RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, | 90.7 | |
| 2fg5_A | 192 | RAB-22B, RAS-related protein RAB-31; G-protein, GT | 90.69 | |
| 2h57_A | 190 | ADP-ribosylation factor-like protein 6; GTP, GTPas | 90.68 | |
| 3bwd_D | 182 | RAC-like GTP-binding protein ARAC6; G domain, cyto | 90.67 | |
| 2cjw_A | 192 | GTP-binding protein GEM; nucleotide-binding, small | 90.65 | |
| 1vg8_A | 207 | RAS-related protein RAB-7; GTP-binding protein, pr | 90.64 | |
| 4fcw_A | 311 | Chaperone protein CLPB; AAA domain; HET: ADP; 2.35 | 90.64 |
| >4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-64 Score=672.92 Aligned_cols=218 Identities=26% Similarity=0.358 Sum_probs=183.7
Q ss_pred CCceeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcC
Q 000979 600 EPHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISG 679 (1202)
Q Consensus 600 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g 679 (1202)
..+.++|+||+|+|+.+ .+.++|+||||+|+|||.+||+||||||||||+++|.|..+ +.+|+|.+||
T Consensus 1073 ~~g~I~f~nVsf~Y~~~----------~~~~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~--p~~G~I~iDG 1140 (1321)
T 4f4c_A 1073 LYGKVIFKNVRFAYPER----------PEIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYD--TLGGEIFIDG 1140 (1321)
T ss_dssp CCCCEEEEEEEECCTTS----------CSSCSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTSSC--CSSSEEEETT
T ss_pred CCCeEEEEEEEEeCCCC----------CCCccccceeEEECCCCEEEEECCCCChHHHHHHHHhcCcc--CCCCEEEECC
Confidence 34679999999999643 23458999999999999999999999999999999999876 4589999999
Q ss_pred ccCCc---ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCC-------Ccccccccc
Q 000979 680 YPKKQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVEL-------NPLRQSLVG 749 (1202)
Q Consensus 680 ~~~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l-------~~~~~~~~~ 749 (1202)
.+++. ..+|+.++||||++.+|+ .|++|||.|+.. +.+.++++ +.++++..++ .+-.|+.+|
T Consensus 1141 ~di~~i~~~~lR~~i~~V~Qdp~LF~-gTIreNI~~gld---~~~~sd~e----i~~Al~~a~l~~~I~~Lp~GldT~vg 1212 (1321)
T 4f4c_A 1141 SEIKTLNPEHTRSQIAIVSQEPTLFD-CSIAENIIYGLD---PSSVTMAQ----VEEAARLANIHNFIAELPEGFETRVG 1212 (1321)
T ss_dssp EETTTBCHHHHHTTEEEECSSCCCCS-EEHHHHHSSSSC---TTTSCHHH----HHHHHHHTTCHHHHHTSTTTTCSEET
T ss_pred EEhhhCCHHHHHhheEEECCCCEeeC-ccHHHHHhccCC---CCCCCHHH----HHHHHHHhCChHHHHcCcCCCCCEec
Confidence 98765 457889999999999986 699999987531 22334333 5566666655 345688888
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEE
Q 000979 750 LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLM 829 (1202)
Q Consensus 750 ~~~~~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l 829 (1202)
..| ..||||||||++|||||+++|+||+||||||+||+++++.|++.|+++. +|+|+|+++|+++ ....||||++|
T Consensus 1213 e~G-~~LSgGQrQriaiARAllr~~~ILiLDEaTSaLD~~tE~~Iq~~l~~~~-~~~TvI~IAHRLs--Ti~~aD~I~Vl 1288 (1321)
T 4f4c_A 1213 DRG-TQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEKVVQEALDRAR-EGRTCIVIAHRLN--TVMNADCIAVV 1288 (1321)
T ss_dssp TTS-CSSCHHHHHHHHHHHHHHSCCSEEEEESCCCSTTSHHHHHHHHHHTTTS-SSSEEEEECSSSS--TTTTCSEEEEE
T ss_pred CCC-cccCHHHHHHHHHHHHHHhCCCEEEEeCccccCCHHHHHHHHHHHHHHc-CCCEEEEeccCHH--HHHhCCEEEEE
Confidence 765 4699999999999999999999999999999999999999999998864 5899999999987 36789999999
Q ss_pred ecCCEEEEEcCCC
Q 000979 830 KRGGQEIYVGPLG 842 (1202)
Q Consensus 830 ~~gG~~~~~G~~~ 842 (1202)
+ +|+++.+|+++
T Consensus 1289 d-~G~IvE~Gth~ 1300 (1321)
T 4f4c_A 1289 S-NGTIIEKGTHT 1300 (1321)
T ss_dssp S-SSSEEEEECHH
T ss_pred E-CCEEEEECCHH
Confidence 8 58999999974
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-58 Score=611.30 Aligned_cols=217 Identities=27% Similarity=0.375 Sum_probs=176.8
Q ss_pred CceeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCc
Q 000979 601 PHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGY 680 (1202)
Q Consensus 601 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~ 680 (1202)
.+.++++||+++|+.+ .+.++|+|+||++++||++||+||||||||||+++|+|..+ +.+|+|.+||.
T Consensus 1028 ~g~i~~~~v~~~y~~~----------~~~~~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~--p~~G~I~i~g~ 1095 (1284)
T 3g5u_A 1028 EGNVQFSGVVFNYPTR----------PSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYD--PMAGSVFLDGK 1095 (1284)
T ss_dssp SCCEEEEEEEBCCSCG----------GGCCSBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTSSC--CSEEEEESSSS
T ss_pred CCcEEEEEEEEECCCC----------CCCeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC--CCCCEEEECCE
Confidence 4579999999998632 12358999999999999999999999999999999999877 45899999999
Q ss_pred cCCc---ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcC-------CCccccccccC
Q 000979 681 PKKQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVE-------LNPLRQSLVGL 750 (1202)
Q Consensus 681 ~~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~-------l~~~~~~~~~~ 750 (1202)
+++. ..+|+.++||+|++.+++ .||+||+.++... ...+.++ +.+.++..+ +.+..|+.+|.
T Consensus 1096 ~i~~~~~~~~r~~i~~v~Q~~~l~~-~ti~eNi~~~~~~---~~~~~~~----i~~~~~~~~~~~~i~~l~~gldt~vge 1167 (1284)
T 3g5u_A 1096 EIKQLNVQWLRAQLGIVSQEPILFD-CSIAENIAYGDNS---RVVSYEE----IVRAAKEANIHQFIDSLPDKYNTRVGD 1167 (1284)
T ss_dssp CTTSSCHHHHTTSCEEEESSCCCCS-SBHHHHHTCCCSS---CCCCHHH----HHHHHHHHTCHHHHSSTTTGGGCBCST
T ss_pred EcccCCHHHHHhceEEECCCCcccc-ccHHHHHhccCCC---CCCCHHH----HHHHHHHhCcHHHHHhCccccccccCC
Confidence 8754 346778999999998774 7999999875311 1223322 233333333 34456777776
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEe
Q 000979 751 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 830 (1202)
Q Consensus 751 ~~~~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~ 830 (1202)
.+ ..||||||||++|||||+++|+||+|||||||||+.+++.+.+.|+++ .+|+|||+++|+++. + ..|||+++|+
T Consensus 1168 ~G-~~LSgGq~Qrv~iARal~~~p~iLiLDEpTs~lD~~~~~~i~~~l~~~-~~~~tvi~isH~l~~-i-~~~dri~vl~ 1243 (1284)
T 3g5u_A 1168 KG-TQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKA-REGRTCIVIAHRLST-I-QNADLIVVIQ 1243 (1284)
T ss_dssp TS-CSSCHHHHHHHHHHHHHHHCCSSEEEESCSSSCCHHHHHHHHHHHHHH-SSSSCEEEECSCTTG-G-GSCSEEEEEE
T ss_pred CC-CccCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHh-CCCCEEEEEecCHHH-H-HcCCEEEEEE
Confidence 54 569999999999999999999999999999999999999999999885 469999999999973 4 6699999998
Q ss_pred cCCEEEEEcCCC
Q 000979 831 RGGQEIYVGPLG 842 (1202)
Q Consensus 831 ~gG~~~~~G~~~ 842 (1202)
+|+++..|+++
T Consensus 1244 -~G~i~~~g~~~ 1254 (1284)
T 3g5u_A 1244 -NGKVKEHGTHQ 1254 (1284)
T ss_dssp -TBEEEEEECHH
T ss_pred -CCEEEEECCHH
Confidence 58999999974
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.1e-45 Score=446.18 Aligned_cols=202 Identities=23% Similarity=0.279 Sum_probs=167.7
Q ss_pred eeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccC
Q 000979 603 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 682 (1202)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 682 (1202)
.++++|+++.|. + ..|+++|+++++||+++|+||||||||||+|+|+|...+ .+|+|.+
T Consensus 357 ~l~~~~l~~~~~-------------~-~~l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p--~~G~I~~----- 415 (607)
T 3bk7_A 357 LVEYPRLVKDYG-------------S-FKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEP--TEGKVEW----- 415 (607)
T ss_dssp EEEECCEEEECS-------------S-CEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCC--SBSCCCC-----
T ss_pred EEEEeceEEEec-------------c-eEEEecccccCCCCEEEEECCCCCCHHHHHHHHhcCCCC--CceEEEE-----
Confidence 477888887762 1 258999999999999999999999999999999998763 3677654
Q ss_pred CcccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHH
Q 000979 683 KQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRK 762 (1202)
Q Consensus 683 ~~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrq 762 (1202)
.+.++|++|+....+.+||.|++....... ...+++++++++.+++.+..++.+ ..|||||||
T Consensus 416 -----~~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~-------~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSGGe~Q 478 (607)
T 3bk7_A 416 -----DLTVAYKPQYIKAEYEGTVYELLSKIDSSK-------LNSNFYKTELLKPLGIIDLYDRNV-----EDLSGGELQ 478 (607)
T ss_dssp -----CCCEEEECSSCCCCCSSBHHHHHHHHHHHH-------HHCHHHHHHTHHHHTCTTTTTSBG-----GGCCHHHHH
T ss_pred -----eeEEEEEecCccCCCCCcHHHHHHhhhccC-------CCHHHHHHHHHHHcCCchHhcCCh-----hhCCHHHHH
Confidence 235899999988778899999886541100 011245788999999988777764 579999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-hCCCEEEEEecCCCHHHHHhcceEEEEec-CCEEEEEcC
Q 000979 763 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DTGRTVVCTIHQPSIDIFEAFDELFLMKR-GGQEIYVGP 840 (1202)
Q Consensus 763 Rv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~-~~g~tvi~~~H~~~~~~~~~~d~v~~l~~-gG~~~~~G~ 840 (1202)
||+|||||+.+|++|||||||+|||+.++..+.+.|++++ +.|.|||++|||++ .+..++||+++|++ .|+++..|+
T Consensus 479 Rv~iAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~-~~~~~adrv~vl~~~~g~~~~~g~ 557 (607)
T 3bk7_A 479 RVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVL-MIDYVSDRLIVFEGEPGRHGRALP 557 (607)
T ss_dssp HHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHH-HHHHHCSEEEEEEEETTTEEEECC
T ss_pred HHHHHHHHHhCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEcCCcceEEecCC
Confidence 9999999999999999999999999999999999999986 46999999999986 57789999999973 278888999
Q ss_pred CCc
Q 000979 841 LGR 843 (1202)
Q Consensus 841 ~~~ 843 (1202)
+.+
T Consensus 558 p~~ 560 (607)
T 3bk7_A 558 PMG 560 (607)
T ss_dssp CEE
T ss_pred HHH
Confidence 865
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-44 Score=435.63 Aligned_cols=216 Identities=20% Similarity=0.243 Sum_probs=171.2
Q ss_pred eeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccC
Q 000979 603 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 682 (1202)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 682 (1202)
.++++|++..+. + ..|+++|+++++||+++|+||||||||||+|+|+|... +.+|+|.+++
T Consensus 269 ~l~~~~l~~~~~-------------~-~~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~~--- 329 (538)
T 3ozx_A 269 KMKWTKIIKKLG-------------D-FQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEIT--ADEGSVTPEK--- 329 (538)
T ss_dssp EEEECCEEEEET-------------T-EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSC--CSBCCEESSC---
T ss_pred eEEEcceEEEEC-------------C-EEEEeccceECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECC---
Confidence 467888887663 1 24788899999999999999999999999999999876 3478888654
Q ss_pred CcccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHH
Q 000979 683 KQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRK 762 (1202)
Q Consensus 683 ~~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrq 762 (1202)
+.++|++|+......+||+||+.+...... . . ....++++++.+++.+..++.+ ..|||||||
T Consensus 330 ------~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~--~-~---~~~~~~~~l~~~~l~~~~~~~~-----~~LSGGq~Q 392 (538)
T 3ozx_A 330 ------QILSYKPQRIFPNYDGTVQQYLENASKDAL--S-T---SSWFFEEVTKRLNLHRLLESNV-----NDLSGGELQ 392 (538)
T ss_dssp ------CCEEEECSSCCCCCSSBHHHHHHHHCSSTT--C-T---TSHHHHHTTTTTTGGGCTTSBG-----GGCCHHHHH
T ss_pred ------eeeEeechhcccccCCCHHHHHHHhhhhcc--c-h---hHHHHHHHHHHcCCHHHhcCCh-----hhCCHHHHH
Confidence 247899998777678999999987421110 0 1 1234678889999988777764 579999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCCHHHHHhcceEEEEec-CCEEEEEcC
Q 000979 763 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKR-GGQEIYVGP 840 (1202)
Q Consensus 763 Rv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~v~~l~~-gG~~~~~G~ 840 (1202)
||+|||||+.+|+||||||||+|||+.++..+++.|+++++ .|.|||++|||++ ++..+|||+++|+. .|.....|+
T Consensus 393 Rv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~~l~~l~~~~g~tvi~vsHdl~-~~~~~aDri~vl~~~~~~~~~~~~ 471 (538)
T 3ozx_A 393 KLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDLS-IHDYIADRIIVFKGEPEKAGLATS 471 (538)
T ss_dssp HHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHH-HHHHHCSEEEEEEEETTTEEEECC
T ss_pred HHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEeCCcceeccCCC
Confidence 99999999999999999999999999999999999999975 5899999999986 57789999999974 245666676
Q ss_pred CCccchhHHHHHhhC
Q 000979 841 LGRHSCHLISYFEAI 855 (1202)
Q Consensus 841 ~~~~~~~~~~~f~~~ 855 (1202)
+.+.......++...
T Consensus 472 ~~~~~~~~~~~~~~~ 486 (538)
T 3ozx_A 472 PVTLKTGMNEFLREL 486 (538)
T ss_dssp CEEHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhc
Confidence 654333344555443
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-44 Score=436.05 Aligned_cols=202 Identities=24% Similarity=0.295 Sum_probs=166.9
Q ss_pred eeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccC
Q 000979 603 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 682 (1202)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 682 (1202)
.++++|+++.|. + ..|+++|+++++||++||+||||||||||+++|+|..++ .+|+|.+
T Consensus 287 ~l~~~~l~~~~~-------------~-~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p--~~G~i~~----- 345 (538)
T 1yqt_A 287 LVTYPRLVKDYG-------------S-FRLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEP--TEGKIEW----- 345 (538)
T ss_dssp EEEECCEEEEET-------------T-EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCC--SBCCCCC-----
T ss_pred EEEEeeEEEEEC-------------C-EEEEeCccccCCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCeEEEE-----
Confidence 477888887763 1 258999999999999999999999999999999998763 3677764
Q ss_pred CcccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHH
Q 000979 683 KQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRK 762 (1202)
Q Consensus 683 ~~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrq 762 (1202)
...++|++|+....+.+||.|++........ . .++.++++++.+++.+..++.+ ..|||||||
T Consensus 346 -----~~~i~~v~Q~~~~~~~~tv~~~~~~~~~~~~----~---~~~~~~~~l~~~~l~~~~~~~~-----~~LSGGe~q 408 (538)
T 1yqt_A 346 -----DLTVAYKPQYIKADYEGTVYELLSKIDASKL----N---SNFYKTELLKPLGIIDLYDREV-----NELSGGELQ 408 (538)
T ss_dssp -----CCCEEEECSSCCCCCSSBHHHHHHHHHHHHH----T---CHHHHHHTTTTTTCGGGTTSBG-----GGCCHHHHH
T ss_pred -----CceEEEEecCCcCCCCCcHHHHHHhhhccCC----C---HHHHHHHHHHHcCChhhhcCCh-----hhCCHHHHH
Confidence 2358999999887788999998865311110 0 1234678899999987766654 579999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCCHHHHHhcceEEEEec-CCEEEEEcC
Q 000979 763 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKR-GGQEIYVGP 840 (1202)
Q Consensus 763 Rv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~v~~l~~-gG~~~~~G~ 840 (1202)
||+|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ .|.|||++|||++ ++..+|||+++|++ .|+++..|+
T Consensus 409 rv~lAraL~~~p~lLlLDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vsHd~~-~~~~~~drv~vl~~~~~~~~~~g~ 487 (538)
T 1yqt_A 409 RVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVL-MIDYVSDRLMVFEGEPGKYGRALP 487 (538)
T ss_dssp HHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHH-HHHHHCSEEEEEEEETTTEEEECC
T ss_pred HHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEeCCcceEeecCC
Confidence 99999999999999999999999999999999999999874 5999999999986 57789999999974 278888999
Q ss_pred CCc
Q 000979 841 LGR 843 (1202)
Q Consensus 841 ~~~ 843 (1202)
+++
T Consensus 488 ~~~ 490 (538)
T 1yqt_A 488 PMG 490 (538)
T ss_dssp CEE
T ss_pred HHH
Confidence 864
|
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-44 Score=406.98 Aligned_cols=220 Identities=22% Similarity=0.291 Sum_probs=192.3
Q ss_pred ceeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCcc
Q 000979 602 HSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP 681 (1202)
Q Consensus 602 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 681 (1202)
..++++||+++|... .+...+|+||||+|++||++||+||||||||||+|+|+|... +.+|+|.++|.+
T Consensus 23 ~mi~v~~ls~~y~~~---------~~~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~--p~~G~I~i~G~~ 91 (366)
T 3tui_C 23 HMIKLSNITKVFHQG---------TRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLER--PTEGSVLVDGQE 91 (366)
T ss_dssp CCEEEEEEEEEEECS---------SSEEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC--CSEEEEEETTEE
T ss_pred ceEEEEeEEEEeCCC---------CCCeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCC--CCceEEEECCEE
Confidence 358999999999621 134679999999999999999999999999999999999877 458999999998
Q ss_pred CCcc------cccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCC
Q 000979 682 KKQE------TFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSG 755 (1202)
Q Consensus 682 ~~~~------~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~ 755 (1202)
+... ..++.+|||+|++.+++.+||+||+.++...+ ..+.++.+++++++++.+||.+..++.+ .+
T Consensus 92 i~~~~~~~~~~~r~~Ig~v~Q~~~l~~~~TV~env~~~~~~~---~~~~~~~~~~v~~lL~~vgL~~~~~~~~-----~~ 163 (366)
T 3tui_C 92 LTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELD---NTPKDEVKRRVTELLSLVGLGDKHDSYP-----SN 163 (366)
T ss_dssp CSSCCHHHHHHHHTTEEEECSSCCCCTTSCHHHHHHHHHHHS---CCCHHHHHHHHHHHHHHHTCGGGTTCCT-----TT
T ss_pred CCcCCHHHHHHHhCcEEEEeCCCccCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchHhcCCh-----hh
Confidence 7531 23567999999999999999999999987654 2345666778999999999998877763 57
Q ss_pred CCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhcceEEEEecCCE
Q 000979 756 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQ 834 (1202)
Q Consensus 756 LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~ 834 (1202)
|||||||||+|||||+.+|++|||||||||||+.++..++++|++++++ |.|||++||+++ .+.++|||+++|++ |+
T Consensus 164 LSGGqkQRVaIArAL~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~vTHdl~-~~~~~aDrv~vl~~-G~ 241 (366)
T 3tui_C 164 LSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEMD-VVKRICDCVAVISN-GE 241 (366)
T ss_dssp SCHHHHHHHHHHHHTTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHH-HHHHHCSEEEEEET-TE
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCEEEEEEC-CE
Confidence 9999999999999999999999999999999999999999999999754 999999999986 57789999999985 89
Q ss_pred EEEEcCCC
Q 000979 835 EIYVGPLG 842 (1202)
Q Consensus 835 ~~~~G~~~ 842 (1202)
++..|++.
T Consensus 242 iv~~g~~~ 249 (366)
T 3tui_C 242 LIEQDTVS 249 (366)
T ss_dssp EEECCBHH
T ss_pred EEEEcCHH
Confidence 99999874
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.6e-44 Score=435.20 Aligned_cols=190 Identities=18% Similarity=0.199 Sum_probs=155.9
Q ss_pred EEeecceEEEeCC-----eEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCCcccccceEEEeecCCCCCCCC
Q 000979 630 VLLNGVSGAFRPG-----VLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFV 704 (1202)
Q Consensus 630 ~iL~~vs~~i~~G-----e~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~l 704 (1202)
.+++|+||++++| |+++|+||||||||||+++|+|...+. +|+ ... +..++|++|+.......
T Consensus 361 ~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p~--~G~------~~~----~~~i~~~~q~~~~~~~~ 428 (608)
T 3j16_B 361 KTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPD--EGQ------DIP----KLNVSMKPQKIAPKFPG 428 (608)
T ss_dssp EECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCCS--BCC------CCC----SCCEEEECSSCCCCCCS
T ss_pred cccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCCCC--CCc------Ccc----CCcEEEecccccccCCc
Confidence 4688899999888 789999999999999999999987633 453 111 23589999987766678
Q ss_pred CHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCC
Q 000979 705 TIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTS 784 (1202)
Q Consensus 705 Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~illlDEPts 784 (1202)
||+|++... .+. .... ...++++++.+++.+..++.+ ..|||||||||+|||||+.+|+||||||||+
T Consensus 429 tv~e~~~~~--~~~--~~~~---~~~~~~~l~~l~l~~~~~~~~-----~~LSGGqkQRv~iAraL~~~p~lLlLDEPT~ 496 (608)
T 3j16_B 429 TVRQLFFKK--IRG--QFLN---PQFQTDVVKPLRIDDIIDQEV-----QHLSGGELQRVAIVLALGIPADIYLIDEPSA 496 (608)
T ss_dssp BHHHHHHHH--CSS--TTTS---HHHHHHTHHHHTSTTTSSSBS-----SSCCHHHHHHHHHHHHTTSCCSEEEECCTTT
T ss_pred cHHHHHHHH--hhc--cccc---HHHHHHHHHHcCChhhhcCCh-----hhCCHHHHHHHHHHHHHHhCCCEEEEECCCC
Confidence 999987532 221 1111 234678999999998877764 5799999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHH-hCCCEEEEEecCCCHHHHHhcceEEEEec-CCEEEEEcCCCcc
Q 000979 785 GLDARAAAIVMRTVRNTV-DTGRTVVCTIHQPSIDIFEAFDELFLMKR-GGQEIYVGPLGRH 844 (1202)
Q Consensus 785 gLD~~~~~~v~~~l~~~~-~~g~tvi~~~H~~~~~~~~~~d~v~~l~~-gG~~~~~G~~~~~ 844 (1202)
|||+.++..+++.|++++ +.|.|||++|||++ ++..++||+++|+. .|+++..|+|.+.
T Consensus 497 gLD~~~~~~i~~ll~~l~~~~g~tviivtHdl~-~~~~~aDrvivl~~~~g~~~~~g~p~~~ 557 (608)
T 3j16_B 497 YLDSEQRIICSKVIRRFILHNKKTAFIVEHDFI-MATYLADKVIVFEGIPSKNAHARAPESL 557 (608)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHH-HHHHHCSEEEECEEETTTEEECCCCEEH
T ss_pred CCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEeCCCCeEEecCChHHH
Confidence 999999999999999986 45999999999986 57889999999974 2789999999764
|
| >3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A | Back alignment and structure |
|---|
Probab=100.00 E-value=8.8e-44 Score=407.46 Aligned_cols=216 Identities=25% Similarity=0.369 Sum_probs=191.9
Q ss_pred eeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccC
Q 000979 603 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 682 (1202)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 682 (1202)
.++++||+++|. ++.+|+||||++++||+++|+||||||||||||+|+|..+ +.+|+|.++|.++
T Consensus 3 ~l~~~~l~~~yg-------------~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~--p~~G~I~i~G~~~ 67 (381)
T 3rlf_A 3 SVQLQNVTKAWG-------------EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLET--ITSGDLFIGEKRM 67 (381)
T ss_dssp CEEEEEEEEEET-------------TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC--CSEEEEEETTEEC
T ss_pred EEEEEeEEEEEC-------------CEEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCC--CCCeEEEECCEEC
Confidence 378999999883 3569999999999999999999999999999999999877 4589999999987
Q ss_pred Cc-ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHH
Q 000979 683 KQ-ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQR 761 (1202)
Q Consensus 683 ~~-~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqr 761 (1202)
.. ...++.+|||+|++.++|.+||+||+.|+.+.+ ..+.++.+++++++++.++|.+..++.+ ++||||||
T Consensus 68 ~~~~~~~r~ig~VfQ~~~l~p~ltV~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~r~p-----~~LSGGqr 139 (381)
T 3rlf_A 68 NDTPPAERGVGMVFQSYALYPHLSVAENMSFGLKLA---GAKKEVINQRVNQVAEVLQLAHLLDRKP-----KALSGGQR 139 (381)
T ss_dssp TTCCGGGSCEEEECTTCCCCTTSCHHHHHTHHHHHT---TCCHHHHHHHHHHHHHHTTCGGGTTCCG-----GGSCHHHH
T ss_pred CCCCHHHCCEEEEecCCcCCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhcCCh-----hHCCHHHH
Confidence 54 234567999999999999999999999987654 2455666778999999999998888764 57999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhcceEEEEecCCEEEEEcC
Q 000979 762 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGP 840 (1202)
Q Consensus 762 qRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G~ 840 (1202)
|||+|||||+.+|+||||||||||||+..+..+.+.|+++.++ |.|+|++|||++ ++..++||+++|++ |+++..|+
T Consensus 140 QRVaiArAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~-ea~~~aDri~vl~~-G~i~~~g~ 217 (381)
T 3rlf_A 140 QRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQV-EAMTLADKIVVLDA-GRVAQVGK 217 (381)
T ss_dssp HHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHH-HHHHHCSEEEEEET-TEEEEEEC
T ss_pred HHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHH-HHHHhCCEEEEEEC-CEEEEEeC
Confidence 9999999999999999999999999999999999999999765 999999999986 68899999999985 89999999
Q ss_pred CCc
Q 000979 841 LGR 843 (1202)
Q Consensus 841 ~~~ 843 (1202)
+.+
T Consensus 218 ~~~ 220 (381)
T 3rlf_A 218 PLE 220 (381)
T ss_dssp HHH
T ss_pred HHH
Confidence 753
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-43 Score=384.60 Aligned_cols=221 Identities=23% Similarity=0.337 Sum_probs=186.4
Q ss_pred eEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCC
Q 000979 604 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 683 (1202)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 683 (1202)
++++||+++|+.. ...+.+|+||||++++||+++|+||||||||||+|+|+|... +.+|+|.++|.++.
T Consensus 2 l~~~~l~~~y~~~---------~~~~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~--p~~G~I~~~g~~~~ 70 (235)
T 3tif_A 2 VKLKNVTKTYKMG---------EEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDK--PTEGEVYIDNIKTN 70 (235)
T ss_dssp EEEEEEEEEEEET---------TEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEECT
T ss_pred EEEEEEEEEeCCC---------CcceeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC--CCceEEEECCEEcc
Confidence 6789999998521 123569999999999999999999999999999999999877 45899999998764
Q ss_pred ccc-------ccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccc-cccccCCCCCC
Q 000979 684 QET-------FARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLR-QSLVGLPGVSG 755 (1202)
Q Consensus 684 ~~~-------~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~-~~~~~~~~~~~ 755 (1202)
... .++.+|||+|++.+++.+||+||+.++...+.......++.++++.++++.+++.+.. +.. +.+
T Consensus 71 ~~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~~ 145 (235)
T 3tif_A 71 DLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHK-----PNQ 145 (235)
T ss_dssp TCCHHHHHHHHHHHEEEECTTCCCCTTSCHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGGTTCC-----GGG
T ss_pred cCCHHHHHHHhhccEEEEecCCccCCCCcHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChhhhhCC-----hhh
Confidence 311 1346999999999999999999999987654322344556667788999999998643 554 357
Q ss_pred CCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhcceEEEEecCCE
Q 000979 756 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQ 834 (1202)
Q Consensus 756 LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~ 834 (1202)
|||||||||+|||||+.+|++|||||||+|||+.++..+++.|++++++ |+|||++||+++ +.+.|||+++|++ |+
T Consensus 146 LSgGq~QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHd~~--~~~~~d~i~~l~~-G~ 222 (235)
T 3tif_A 146 LSGGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDIN--VARFGERIIYLKD-GE 222 (235)
T ss_dssp SCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHH--HHTTSSEEEEEET-TE
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEcCCHH--HHHhCCEEEEEEC-CE
Confidence 9999999999999999999999999999999999999999999999765 999999999975 5689999999985 89
Q ss_pred EEEEcCCCc
Q 000979 835 EIYVGPLGR 843 (1202)
Q Consensus 835 ~~~~G~~~~ 843 (1202)
++..|++.+
T Consensus 223 i~~~~~~~~ 231 (235)
T 3tif_A 223 VEREEKLRG 231 (235)
T ss_dssp EEEEEECC-
T ss_pred EEEEcChhh
Confidence 999998753
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.5e-44 Score=405.96 Aligned_cols=216 Identities=25% Similarity=0.400 Sum_probs=188.2
Q ss_pred eeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccC
Q 000979 603 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 682 (1202)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 682 (1202)
.++++||+++|. ++.+|+||||++++||+++|+||||||||||||+|+|... +.+|+|.++|.++
T Consensus 4 ~l~i~~ls~~y~-------------~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~--p~~G~I~i~G~~i 68 (359)
T 3fvq_A 4 ALHIGHLSKSFQ-------------NTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQ--PDSGEISLSGKTI 68 (359)
T ss_dssp CEEEEEEEEEET-------------TEEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSC--CSEEEEEETTEEE
T ss_pred EEEEEeEEEEEC-------------CEEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCC--CCCcEEEECCEEC
Confidence 478999999883 3569999999999999999999999999999999999877 4589999999876
Q ss_pred ----Cc-ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCC
Q 000979 683 ----KQ-ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLS 757 (1202)
Q Consensus 683 ----~~-~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LS 757 (1202)
.. ...++.+|||+|++.++|.+||+||+.|+...+ ....++.+++++++++.++|.+..++.+ .+||
T Consensus 69 ~~~~~~~~~~~r~ig~vfQ~~~l~p~ltV~eni~~~l~~~---~~~~~~~~~~v~~~l~~~gL~~~~~r~~-----~~LS 140 (359)
T 3fvq_A 69 FSKNTNLPVRERRLGYLVQEGVLFPHLTVYRNIAYGLGNG---KGRTAQERQRIEAMLELTGISELAGRYP-----HELS 140 (359)
T ss_dssp ESSSCBCCGGGSCCEEECTTCCCCTTSCHHHHHHTTSTTS---SCCSHHHHHHHHHHHHHHTCGGGTTSCG-----GGSC
T ss_pred cccccccchhhCCEEEEeCCCcCCCCCCHHHHHHHHHHHc---CCChHHHHHHHHHHHHHcCCchHhcCCh-----hhCC
Confidence 22 234577999999999999999999999975433 2234555677899999999999888764 5799
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-hCCCEEEEEecCCCHHHHHhcceEEEEecCCEEE
Q 000979 758 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEI 836 (1202)
Q Consensus 758 gGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~-~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~ 836 (1202)
|||||||+|||||+.+|++|||||||||||+..+..+++.|+++. +.|.|+|++|||++ ++..++||+++|++ |+++
T Consensus 141 GGq~QRValArAL~~~P~lLLLDEPts~LD~~~r~~l~~~l~~~~~~~g~tvi~vTHd~~-ea~~~aDri~vl~~-G~i~ 218 (359)
T 3fvq_A 141 GGQQQRAALARALAPDPELILLDEPFSALDEQLRRQIREDMIAALRANGKSAVFVSHDRE-EALQYADRIAVMKQ-GRIL 218 (359)
T ss_dssp HHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCEEEEECCCHH-HHHHHCSEEEEEET-TEEE
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHHCCEEEEEEC-CEEE
Confidence 999999999999999999999999999999999999999888775 46999999999986 68899999999985 8999
Q ss_pred EEcCCCc
Q 000979 837 YVGPLGR 843 (1202)
Q Consensus 837 ~~G~~~~ 843 (1202)
..|++++
T Consensus 219 ~~g~~~e 225 (359)
T 3fvq_A 219 QTASPHE 225 (359)
T ss_dssp EEECHHH
T ss_pred EEeCHHH
Confidence 9999753
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-43 Score=392.72 Aligned_cols=217 Identities=25% Similarity=0.379 Sum_probs=187.4
Q ss_pred eeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccC
Q 000979 603 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 682 (1202)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 682 (1202)
.++++||+++|+ ++..+|+||||++++||+++|+||||||||||+|+|+|... +.+|+|.++|.++
T Consensus 7 ~l~i~~ls~~y~------------~~~~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~--p~~G~I~~~G~~i 72 (275)
T 3gfo_A 7 ILKVEELNYNYS------------DGTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILK--PSSGRILFDNKPI 72 (275)
T ss_dssp EEEEEEEEEECT------------TSCEEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSC--CSEEEEEETTEEC
T ss_pred EEEEEEEEEEEC------------CCCeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCC--CCCeEEEECCEEC
Confidence 488999999884 22358999999999999999999999999999999999876 4589999999987
Q ss_pred C--c---ccccceEEEeecCCC-CCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCC
Q 000979 683 K--Q---ETFARISGYCEQNDI-HSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGL 756 (1202)
Q Consensus 683 ~--~---~~~~~~~~~v~q~~~-~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~L 756 (1202)
. . ...++.+|||+|++. .+..+||+||+.|+.... ..+.++.+++++++++.++|.+..++.+ .+|
T Consensus 73 ~~~~~~~~~~~~~ig~v~Q~~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----~~L 144 (275)
T 3gfo_A 73 DYSRKGIMKLRESIGIVFQDPDNQLFSASVYQDVSFGAVNM---KLPEDEIRKRVDNALKRTGIEHLKDKPT-----HCL 144 (275)
T ss_dssp CCSHHHHHHHHHSEEEECSSGGGTCCSSBHHHHHHHHHHTS---CCCHHHHHHHHHHHHHHTTCGGGTTSBG-----GGS
T ss_pred CcccccHHHHhCcEEEEEcCcccccccCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhcCCc-----ccC
Confidence 3 1 234678999999863 444789999999987543 2345566678999999999998887764 579
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-hCCCEEEEEecCCCHHHHHhcceEEEEecCCEE
Q 000979 757 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQE 835 (1202)
Q Consensus 757 SgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~-~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~ 835 (1202)
||||||||+|||||+.+|++|||||||+|||+.++..+++.|++++ ++|+|||++||+++ .+.++|||+++|++ |++
T Consensus 145 SgGqkQRv~iAraL~~~P~lLlLDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHdl~-~~~~~~drv~~l~~-G~i 222 (275)
T 3gfo_A 145 SFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDID-IVPLYCDNVFVMKE-GRV 222 (275)
T ss_dssp CHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHCCEEEEEESCCS-SGGGGCSEEEEEET-TEE
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHhhCCCEEEEEecCHH-HHHHhCCEEEEEEC-CEE
Confidence 9999999999999999999999999999999999999999999997 56999999999998 57789999999985 899
Q ss_pred EEEcCCCc
Q 000979 836 IYVGPLGR 843 (1202)
Q Consensus 836 ~~~G~~~~ 843 (1202)
++.|++.+
T Consensus 223 ~~~g~~~~ 230 (275)
T 3gfo_A 223 ILQGNPKE 230 (275)
T ss_dssp EEEECHHH
T ss_pred EEECCHHH
Confidence 99999753
|
| >2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-43 Score=387.04 Aligned_cols=215 Identities=25% Similarity=0.345 Sum_probs=185.7
Q ss_pred eeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccC
Q 000979 603 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 682 (1202)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 682 (1202)
.++++|++++|. ++++|+||||++++||+++|+||||||||||+|+|+|..+ +.+|+|.++|.++
T Consensus 24 ~l~i~~l~~~y~-------------~~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~--p~~G~I~~~g~~i 88 (263)
T 2olj_A 24 MIDVHQLKKSFG-------------SLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLED--FDEGEIIIDGINL 88 (263)
T ss_dssp SEEEEEEEEEET-------------TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSC--CSEEEEEETTEES
T ss_pred eEEEEeEEEEEC-------------CEEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCC--CCCcEEEECCEEC
Confidence 389999999883 2468999999999999999999999999999999999876 4589999999876
Q ss_pred C--c---ccccceEEEeecCCCCCCCCCHHHHHHHHH-HccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCC
Q 000979 683 K--Q---ETFARISGYCEQNDIHSPFVTIYESLLFSA-WLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGL 756 (1202)
Q Consensus 683 ~--~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~-~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~L 756 (1202)
. . ..+++.++||+|++.+++.+||+||+.++. ... ....++.+++++++++.+++.+..++.+ .+|
T Consensus 89 ~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----~~L 160 (263)
T 2olj_A 89 KAKDTNLNKVREEVGMVFQRFNLFPHMTVLNNITLAPMKVR---KWPREKAEAKAMELLDKVGLKDKAHAYP-----DSL 160 (263)
T ss_dssp SSTTCCHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTS---CCCHHHHHHHHHHHHHHTTCGGGTTSCG-----GGS
T ss_pred CCccccHHHHhCcEEEEeCCCcCCCCCCHHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCCchHhcCCh-----hhC
Confidence 3 1 123567999999999999999999999864 322 2234445567899999999988777664 579
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCCEEE
Q 000979 757 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEI 836 (1202)
Q Consensus 757 SgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~ 836 (1202)
||||||||+|||||+.+|++|||||||+|||+.++..+++.|++++++|+|||++||+++ .+.+.||++++|++ |+++
T Consensus 161 SgGqkQRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~-~~~~~~d~v~~l~~-G~i~ 238 (263)
T 2olj_A 161 SGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVTHEMG-FAREVGDRVLFMDG-GYII 238 (263)
T ss_dssp CHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCEEEEECSCHH-HHHHHCSEEEEEET-TEEE
T ss_pred CHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHH-HHHHhCCEEEEEEC-CEEE
Confidence 999999999999999999999999999999999999999999999877999999999986 56778999999985 8999
Q ss_pred EEcCCC
Q 000979 837 YVGPLG 842 (1202)
Q Consensus 837 ~~G~~~ 842 (1202)
+.|+++
T Consensus 239 ~~g~~~ 244 (263)
T 2olj_A 239 EEGKPE 244 (263)
T ss_dssp EEECHH
T ss_pred EECCHH
Confidence 999863
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.6e-43 Score=378.22 Aligned_cols=213 Identities=22% Similarity=0.267 Sum_probs=183.6
Q ss_pred eeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccC
Q 000979 603 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 682 (1202)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 682 (1202)
.++++|++++|. ++++|+||||++++||+++|+||||||||||+|+|+|..+ +.+|+|.++|.+.
T Consensus 4 ~l~~~~l~~~y~-------------~~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~ 68 (224)
T 2pcj_A 4 ILRAENIKKVIR-------------GYEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDA--PTEGKVFLEGKEV 68 (224)
T ss_dssp EEEEEEEEEEET-------------TEEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSC--CSEEEEEETTEEC
T ss_pred EEEEEeEEEEEC-------------CEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEEC
Confidence 378999999883 2468999999999999999999999999999999999876 4589999999886
Q ss_pred Ccc------ccc-ceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCC
Q 000979 683 KQE------TFA-RISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSG 755 (1202)
Q Consensus 683 ~~~------~~~-~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~ 755 (1202)
... ..+ +.++||+|++.+++.+||+||+.++...+ ....++.+++++++++.+++.+..++.+ .+
T Consensus 69 ~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~ 140 (224)
T 2pcj_A 69 DYTNEKELSLLRNRKLGFVFQFHYLIPELTALENVIVPMLKM---GKPKKEAKERGEYLLSELGLGDKLSRKP-----YE 140 (224)
T ss_dssp CSSCHHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHT---TCCHHHHHHHHHHHHHHTTCTTCTTCCG-----GG
T ss_pred CCCCHHHHHHHHhCcEEEEecCcccCCCCCHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCCchhhhCCh-----hh
Confidence 431 122 57999999999999999999999876543 1233444567899999999988877764 57
Q ss_pred CCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCCEE
Q 000979 756 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQE 835 (1202)
Q Consensus 756 LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~ 835 (1202)
|||||||||+|||||+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||+++ . .+.||++++|++ |++
T Consensus 141 LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~-~-~~~~d~v~~l~~-G~i 217 (224)
T 2pcj_A 141 LSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFLKINEGGTSIVMVTHERE-L-AELTHRTLEMKD-GKV 217 (224)
T ss_dssp SCHHHHHHHHHHHHTTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHH-H-HTTSSEEEEEET-TEE
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHH-H-HHhCCEEEEEEC-CEE
Confidence 9999999999999999999999999999999999999999999999877999999999975 3 488999999985 899
Q ss_pred EEEcCC
Q 000979 836 IYVGPL 841 (1202)
Q Consensus 836 ~~~G~~ 841 (1202)
++.|+.
T Consensus 218 ~~~g~~ 223 (224)
T 2pcj_A 218 VGEITR 223 (224)
T ss_dssp EEEEEC
T ss_pred EEEeee
Confidence 999874
|
| >1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=9.8e-43 Score=384.98 Aligned_cols=214 Identities=20% Similarity=0.254 Sum_probs=185.2
Q ss_pred eeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccC
Q 000979 603 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 682 (1202)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 682 (1202)
.++++|++++|. ++++|+||||++++||+++|+||||||||||+|+|+|..+ +.+|+|.++|.++
T Consensus 6 ~l~i~~l~~~y~-------------~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~--p~~G~i~~~g~~~ 70 (262)
T 1b0u_A 6 KLHVIDLHKRYG-------------GHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEK--PSEGAIIVNGQNI 70 (262)
T ss_dssp CEEEEEEEEEET-------------TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSC--CSEEEEEETTEEC
T ss_pred eEEEeeEEEEEC-------------CEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCEEc
Confidence 388999999883 3468999999999999999999999999999999999876 4589999999876
Q ss_pred Cc----------------ccccceEEEeecCCCCCCCCCHHHHHHHHH-HccCCCCCCHHHHHHHHHHHHHHcCCCcc-c
Q 000979 683 KQ----------------ETFARISGYCEQNDIHSPFVTIYESLLFSA-WLRLSPEVDSETRKMFIDEVMELVELNPL-R 744 (1202)
Q Consensus 683 ~~----------------~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~-~~~~~~~~~~~~~~~~~~~~l~~l~l~~~-~ 744 (1202)
.. ...++.+|||+|++.+++.+||+||+.++. ..+ ....++.+++++++++.+++.+. .
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~e~l~~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~ 147 (262)
T 1b0u_A 71 NLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVL---GLSKHDARERALKYLAKVGIDERAQ 147 (262)
T ss_dssp CEEECTTSSEEESCHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTT---CCCHHHHHHHHHHHHHHTTCCHHHH
T ss_pred cccccccccccccChhhHHHHhcceEEEecCcccCCCCcHHHHHHhhHHHhc---CCCHHHHHHHHHHHHHHcCCCchhh
Confidence 41 123567999999999999999999999864 322 22344455678999999999887 7
Q ss_pred cccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcc
Q 000979 745 QSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFD 824 (1202)
Q Consensus 745 ~~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d 824 (1202)
++.+ .+|||||||||+|||||+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||+++ .+.++||
T Consensus 148 ~~~~-----~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~-~~~~~~d 221 (262)
T 1b0u_A 148 GKYP-----VHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMG-FARHVSS 221 (262)
T ss_dssp TSCG-----GGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHH-HHHHHCS
T ss_pred cCCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCC
Confidence 7653 579999999999999999999999999999999999999999999999877999999999986 5678999
Q ss_pred eEEEEecCCEEEEEcCC
Q 000979 825 ELFLMKRGGQEIYVGPL 841 (1202)
Q Consensus 825 ~v~~l~~gG~~~~~G~~ 841 (1202)
|+++|++ |+++..|++
T Consensus 222 ~v~~l~~-G~i~~~g~~ 237 (262)
T 1b0u_A 222 HVIFLHQ-GKIEEEGDP 237 (262)
T ss_dssp EEEEEET-TEEEEEECH
T ss_pred EEEEEEC-CEEEEeCCH
Confidence 9999985 899999986
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.2e-43 Score=398.02 Aligned_cols=218 Identities=24% Similarity=0.363 Sum_probs=189.9
Q ss_pred ceeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCcc
Q 000979 602 HSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP 681 (1202)
Q Consensus 602 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 681 (1202)
..++++|++++|+ +++++|+||||++++||+++|+||||||||||||+|+|..+ +.+|+|.++|.+
T Consensus 13 ~~l~~~~l~~~y~------------g~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~--p~~G~I~i~g~~ 78 (355)
T 1z47_A 13 MTIEFVGVEKIYP------------GGARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLER--PTKGDVWIGGKR 78 (355)
T ss_dssp EEEEEEEEEECCT------------TSTTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSC--CSEEEEEETTEE
T ss_pred ceEEEEEEEEEEc------------CCCEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCC--CCccEEEECCEE
Confidence 4589999998872 12347999999999999999999999999999999999877 458999999988
Q ss_pred CCc-ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHH
Q 000979 682 KKQ-ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQ 760 (1202)
Q Consensus 682 ~~~-~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGq 760 (1202)
+.. ...++.+|||+|++.++|.+||+||+.|+...+ ..+.++.+++++++++.++|.+..++.. ++|||||
T Consensus 79 i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~l~~~---~~~~~~~~~~v~~~l~~~gL~~~~~r~~-----~~LSGGq 150 (355)
T 1z47_A 79 VTDLPPQKRNVGLVFQNYALFQHMTVYDNVSFGLREK---RVPKDEMDARVRELLRFMRLESYANRFP-----HELSGGQ 150 (355)
T ss_dssp CTTCCGGGSSEEEECGGGCCCTTSCHHHHHHHHHHHT---TCCHHHHHHHHHHHHHHTTCGGGTTSCG-----GGSCHHH
T ss_pred CCcCChhhCcEEEEecCcccCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhHhcCCc-----ccCCHHH
Confidence 643 234677999999999999999999999987543 2344556677999999999998888764 5799999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhcceEEEEecCCEEEEEc
Q 000979 761 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVG 839 (1202)
Q Consensus 761 rqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G 839 (1202)
||||+|||||+.+|++|||||||||||+.++..+++.|+++.++ |.|+|++|||++ ++..++||+++|++ |+++..|
T Consensus 151 ~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~a~~~adri~vl~~-G~i~~~g 228 (355)
T 1z47_A 151 QQRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHDQE-EALEVADRVLVLHE-GNVEQFG 228 (355)
T ss_dssp HHHHHHHHHHTTCCSEEEEESTTCCSSHHHHHHHHHHHHHHHHHHTCEEEEECSCHH-HHHHHCSEEEEEET-TEEEEEE
T ss_pred HHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHH-HHHHhCCEEEEEEC-CEEEEEc
Confidence 99999999999999999999999999999999999999999765 999999999986 67889999999985 8999999
Q ss_pred CCCc
Q 000979 840 PLGR 843 (1202)
Q Consensus 840 ~~~~ 843 (1202)
++++
T Consensus 229 ~~~~ 232 (355)
T 1z47_A 229 TPEE 232 (355)
T ss_dssp CHHH
T ss_pred CHHH
Confidence 8753
|
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-42 Score=380.52 Aligned_cols=215 Identities=23% Similarity=0.318 Sum_probs=185.8
Q ss_pred eeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccC
Q 000979 603 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 682 (1202)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 682 (1202)
.++++||+++|. ++.+|+||||++++||+++|+||||||||||||+|+|... +.+|+|.++|.+.
T Consensus 15 ~l~i~~l~~~y~-------------~~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~--p~~G~I~~~g~~~ 79 (256)
T 1vpl_A 15 AVVVKDLRKRIG-------------KKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIK--PSSGIVTVFGKNV 79 (256)
T ss_dssp CEEEEEEEEEET-------------TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSC--CSEEEEEETTEET
T ss_pred eEEEEEEEEEEC-------------CEEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEEC
Confidence 488999999883 3468999999999999999999999999999999999876 4589999999876
Q ss_pred Cc--ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHH
Q 000979 683 KQ--ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQ 760 (1202)
Q Consensus 683 ~~--~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGq 760 (1202)
.. ...++.+|||+|++.+++.+||+||+.+...... ...++.+++++++++.++|.+..++.+ ..|||||
T Consensus 80 ~~~~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~~---~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~LSgGq 151 (256)
T 1vpl_A 80 VEEPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYA---SSSSEIEEMVERATEIAGLGEKIKDRV-----STYSKGM 151 (256)
T ss_dssp TTCHHHHHTTEEEECTTCCCCTTSBHHHHHHHHHHHHC---CCHHHHHHHHHHHHHHHCCGGGGGSBG-----GGCCHHH
T ss_pred CccHHHHhhcEEEEcCCCCCCCCCcHHHHHHHHHHHcC---CChHHHHHHHHHHHHHCCCchHhcCCh-----hhCCHHH
Confidence 43 2345679999999999999999999998764431 233344566889999999998877764 5799999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCCEEEEEcC
Q 000979 761 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGP 840 (1202)
Q Consensus 761 rqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G~ 840 (1202)
||||+|||||+.+|++|||||||+|||+.++..+++.|++++++|+|||++||+++ ++..+||++++|.+ |++++.|+
T Consensus 152 ~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~-~~~~~~d~v~~l~~-G~i~~~g~ 229 (256)
T 1vpl_A 152 VRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNML-EVEFLCDRIALIHN-GTIVETGT 229 (256)
T ss_dssp HHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHH-HHTTTCSEEEEEET-TEEEEEEE
T ss_pred HHHHHHHHHHHcCCCEEEEeCCccccCHHHHHHHHHHHHHHHhCCCEEEEEcCCHH-HHHHHCCEEEEEEC-CEEEEecC
Confidence 99999999999999999999999999999999999999999877999999999985 46678999999985 89999998
Q ss_pred CC
Q 000979 841 LG 842 (1202)
Q Consensus 841 ~~ 842 (1202)
++
T Consensus 230 ~~ 231 (256)
T 1vpl_A 230 VE 231 (256)
T ss_dssp HH
T ss_pred HH
Confidence 63
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.4e-43 Score=385.48 Aligned_cols=218 Identities=25% Similarity=0.283 Sum_probs=185.4
Q ss_pred eeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccC
Q 000979 603 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 682 (1202)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 682 (1202)
.++++|++++|. ++++|+||||++++||+++|+||||||||||+|+|+|..+ +.+|+|.++|.++
T Consensus 7 ~l~i~~l~~~y~-------------~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~--p~~G~i~~~g~~~ 71 (257)
T 1g6h_A 7 ILRTENIVKYFG-------------EFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLK--ADEGRVYFENKDI 71 (257)
T ss_dssp EEEEEEEEEEET-------------TEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEEC
T ss_pred EEEEeeeEEEEC-------------CEeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEEC
Confidence 488999999883 2468999999999999999999999999999999999876 4489999999886
Q ss_pred Ccc----cccceEEEeecCCCCCCCCCHHHHHHHHHHc-cCCC---------CCCHHHHHHHHHHHHHHcCCCccccccc
Q 000979 683 KQE----TFARISGYCEQNDIHSPFVTIYESLLFSAWL-RLSP---------EVDSETRKMFIDEVMELVELNPLRQSLV 748 (1202)
Q Consensus 683 ~~~----~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~-~~~~---------~~~~~~~~~~~~~~l~~l~l~~~~~~~~ 748 (1202)
... ..++.++||+|++.+++.+||+||+.++... .... ....++.+++++++++.+|+.+..++.+
T Consensus 72 ~~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 151 (257)
T 1g6h_A 72 TNKEPAELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKA 151 (257)
T ss_dssp TTCCHHHHHHHTEEECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBG
T ss_pred CCCCHHHHHhCCEEEEccCCccCCCCcHHHHHHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHcCCchhhCCCc
Confidence 431 2345799999999999999999999986532 1110 0122334566889999999988877764
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEE
Q 000979 749 GLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFL 828 (1202)
Q Consensus 749 ~~~~~~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~ 828 (1202)
..|||||||||+|||||+.+|++|+|||||+|||+.++..+++.|++++++|+|||++||+++ ++.+.|||+++
T Consensus 152 -----~~LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~-~~~~~~d~v~~ 225 (257)
T 1g6h_A 152 -----GELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLD-IVLNYIDHLYV 225 (257)
T ss_dssp -----GGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCS-TTGGGCSEEEE
T ss_pred -----hhCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhCCEEEE
Confidence 579999999999999999999999999999999999999999999999877999999999997 57789999999
Q ss_pred EecCCEEEEEcCCC
Q 000979 829 MKRGGQEIYVGPLG 842 (1202)
Q Consensus 829 l~~gG~~~~~G~~~ 842 (1202)
|++ |++++.|+++
T Consensus 226 l~~-G~i~~~g~~~ 238 (257)
T 1g6h_A 226 MFN-GQIIAEGRGE 238 (257)
T ss_dssp EET-TEEEEEEESH
T ss_pred EEC-CEEEEEeCHH
Confidence 985 8999999874
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-43 Score=441.79 Aligned_cols=207 Identities=20% Similarity=0.248 Sum_probs=155.6
Q ss_pred eeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccC
Q 000979 603 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 682 (1202)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 682 (1202)
-++++|++++|+. .++++|+|+||++++||+++|+||||||||||+|+|+|... +.+|+|.++|.
T Consensus 671 mL~v~nLs~~Y~g-----------~~~~iL~dVSl~I~~GeivaIiGpNGSGKSTLLklLaGll~--P~sG~I~~~~~-- 735 (986)
T 2iw3_A 671 IVKVTNMEFQYPG-----------TSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELL--PTSGEVYTHEN-- 735 (986)
T ss_dssp EEEEEEEEECCTT-----------CSSCSEEEEEEEEETTCEEEECSCCCHHHHHHHHHHTTSSC--CSEEEEEECTT--
T ss_pred eEEEEeeEEEeCC-----------CCceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEEcCc--
Confidence 3789999988741 12457999999999999999999999999999999999876 34899999863
Q ss_pred CcccccceEEEeecCCCC----CCCCCHHHHHHHHHHcc------------CC---------------------------
Q 000979 683 KQETFARISGYCEQNDIH----SPFVTIYESLLFSAWLR------------LS--------------------------- 719 (1202)
Q Consensus 683 ~~~~~~~~~~~v~q~~~~----~~~lTv~e~l~~~~~~~------------~~--------------------------- 719 (1202)
..++|++|++.+ ....|++|++.+..... ..
T Consensus 736 ------~~I~yv~Q~~~~~l~~~~~~t~~e~i~~~~q~g~d~~~~~~~~~~l~~ed~~~~~~~~~~~g~~r~~~~i~~r~ 809 (986)
T 2iw3_A 736 ------CRIAYIKQHAFAHIESHLDKTPSEYIQWRFQTGEDRETMDRANRQINENDAEAMNKIFKIEGTPRRIAGIHSRR 809 (986)
T ss_dssp ------CCEEEECHHHHHHGGGCTTSCHHHHHHHHTTTSSCTTTTTTTSCCCCSSCSSGGGCCEEETTEEEEEEEEEEEE
T ss_pred ------cceEeeccchhhhhhcccccCHHHHHHHHhhccchhhhhhhhhhccchhhhhhhhcccccccchhhhhhhhhhh
Confidence 136788886421 12357777765421100 00
Q ss_pred -------------------------CCCC----------------------------------HHHHHHHHHHHHHHcCC
Q 000979 720 -------------------------PEVD----------------------------------SETRKMFIDEVMELVEL 740 (1202)
Q Consensus 720 -------------------------~~~~----------------------------------~~~~~~~~~~~l~~l~l 740 (1202)
...+ ....+++++++++.+||
T Consensus 810 ~~~~~~~~e~~~sv~ENi~l~~~~~~~lt~~en~~~~~~~l~~~~~~~v~~~d~~~~~~~g~~~~~~~~~i~~~Le~lGL 889 (986)
T 2iw3_A 810 KFKNTYEYECSFLLGENIGMKSERWVPMMSVDNAWIPRGELVESHSKMVAEVDMKEALASGQFRPLTRKEIEEHCSMLGL 889 (986)
T ss_dssp EETTEEEEEEEEEEEESTTSTTCEEEECCGGGCEEEEGGGTHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHHHHHHTTC
T ss_pred hhcccchhhhhhhhhhhhhcccccccccchhhhhhhhhHHHhhhHhhhhhhhhhhhhhhhcccchhHHHHHHHHHHHcCC
Confidence 0000 00012457889999999
Q ss_pred Ccc--ccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHH
Q 000979 741 NPL--RQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSID 818 (1202)
Q Consensus 741 ~~~--~~~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~ 818 (1202)
.+. .+.. +++|||||||||+|||+|+.+|+||+|||||+|||+.+...+.+.|+++ |.|||++||+++ .
T Consensus 890 ~~~~~~~~~-----~~~LSGGQkQRVaLArAL~~~P~LLLLDEPT~gLD~~s~~~L~~~L~~~---g~tVIiISHD~e-~ 960 (986)
T 2iw3_A 890 DPEIVSHSR-----IRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEF---EGGVIIITHSAE-F 960 (986)
T ss_dssp CHHHHHHSC-----GGGCCHHHHHHHHHHHHHTTCCSEEEEECGGGTCCHHHHHHHHHHHHSC---SSEEEEECSCHH-H
T ss_pred CchhhcCCC-----ccccCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHh---CCEEEEEECCHH-H
Confidence 752 3444 3579999999999999999999999999999999999999999988754 679999999975 4
Q ss_pred HHHhcceEEEEecCCEEEEEcC
Q 000979 819 IFEAFDELFLMKRGGQEIYVGP 840 (1202)
Q Consensus 819 ~~~~~d~v~~l~~gG~~~~~G~ 840 (1202)
+.+.||++++|.+ |+++..|+
T Consensus 961 v~~l~DrVivL~~-G~Iv~~G~ 981 (986)
T 2iw3_A 961 TKNLTEEVWAVKD-GRMTPSGH 981 (986)
T ss_dssp HTTTCCEEECCBT-TBCCC---
T ss_pred HHHhCCEEEEEEC-CEEEEeCC
Confidence 6678999999985 78887775
|
| >2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.7e-43 Score=398.49 Aligned_cols=215 Identities=24% Similarity=0.346 Sum_probs=187.1
Q ss_pred eEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCC
Q 000979 604 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 683 (1202)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 683 (1202)
++++|++++|. ++.+|+|+||++++||+++|+||||||||||||+|+|..+ +.+|+|.++|.++.
T Consensus 4 l~~~~l~~~y~-------------~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~--p~~G~I~i~g~~i~ 68 (359)
T 2yyz_A 4 IRVVNLKKYFG-------------KVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYK--PTSGEIYFDDVLVN 68 (359)
T ss_dssp EEEEEEEEEET-------------TEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSC--CSEEEEEETTEECT
T ss_pred EEEEEEEEEEC-------------CEEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCC--CCccEEEECCEECC
Confidence 78899999883 3568999999999999999999999999999999999877 45899999998864
Q ss_pred c-ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHH
Q 000979 684 Q-ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRK 762 (1202)
Q Consensus 684 ~-~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrq 762 (1202)
. ...++.+|||+|++.++|.+||+||+.|+...+ ..+.++.+++++++++.++|.+..++.. ++|||||||
T Consensus 69 ~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~r~~-----~~LSgGq~Q 140 (359)
T 2yyz_A 69 DIPPKYREVGMVFQNYALYPHMTVFENIAFPLRAR---RISKDEVEKRVVEIARKLLIDNLLDRKP-----TQLSGGQQQ 140 (359)
T ss_dssp TSCGGGTTEEEECSSCCCCTTSCHHHHHHGGGSSS---CSHHHHTTHHHHHHHHHTTCGGGTTSCG-----GGSCHHHHH
T ss_pred CCChhhCcEEEEecCcccCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchHhcCCh-----hhCCHHHHH
Confidence 3 223567999999999999999999999875432 2233444567899999999998888764 579999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhcceEEEEecCCEEEEEcCC
Q 000979 763 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPL 841 (1202)
Q Consensus 763 Rv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G~~ 841 (1202)
||+|||||+.+|++|||||||||||+..+..+.+.|+++.++ |.|+|++|||++ ++..++||+++|++ |+++..|++
T Consensus 141 RvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~~~~~adri~vl~~-G~i~~~g~~ 218 (359)
T 2yyz_A 141 RVALARALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELGITSVYVTHDQA-EAMTMASRIAVFNQ-GKLVQYGTP 218 (359)
T ss_dssp HHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEEESCHH-HHHHHCSEEEEEET-TEEEEEECH
T ss_pred HHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHhCCEEEEEEC-CEEEEeCCH
Confidence 999999999999999999999999999999999999999755 999999999986 67889999999985 899999997
Q ss_pred Cc
Q 000979 842 GR 843 (1202)
Q Consensus 842 ~~ 843 (1202)
++
T Consensus 219 ~~ 220 (359)
T 2yyz_A 219 DE 220 (359)
T ss_dssp HH
T ss_pred HH
Confidence 53
|
| >2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-42 Score=398.20 Aligned_cols=214 Identities=26% Similarity=0.389 Sum_probs=188.0
Q ss_pred eEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCC
Q 000979 604 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 683 (1202)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 683 (1202)
++++|++++|. ++++|+||||++++||+++|+||||||||||||+|+|..+ +.+|+|.++|.++.
T Consensus 4 l~~~~l~~~y~-------------~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~--p~~G~I~i~g~~i~ 68 (362)
T 2it1_A 4 IKLENIVKKFG-------------NFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYK--PTSGKIYFDEKDVT 68 (362)
T ss_dssp EEEEEEEEESS-------------SSEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC--CSEEEEEETTEECT
T ss_pred EEEEeEEEEEC-------------CEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCC--CCceEEEECCEECC
Confidence 78899998872 3468999999999999999999999999999999999877 45899999998864
Q ss_pred c-ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHH
Q 000979 684 Q-ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRK 762 (1202)
Q Consensus 684 ~-~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrq 762 (1202)
. ...++.+|||+|++.++|.+||+||+.|+...+ ....++.+++++++++.++|.+..++.. ++|||||||
T Consensus 69 ~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~r~~-----~~LSGGq~Q 140 (362)
T 2it1_A 69 ELPPKDRNVGLVFQNWALYPHMTVYKNIAFPLELR---KAPREEIDKKVREVAKMLHIDKLLNRYP-----WQLSGGQQQ 140 (362)
T ss_dssp TSCGGGTTEEEECTTCCCCTTSCHHHHHHHHHHHT---TCCHHHHHHHHHHHHHHTTCTTCTTCCG-----GGSCHHHHH
T ss_pred cCCHhHCcEEEEecCcccCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchHhhCCh-----hhCCHHHHH
Confidence 3 223567999999999999999999999987543 2344555677899999999998888764 579999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhcceEEEEecCCEEEEEcCC
Q 000979 763 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPL 841 (1202)
Q Consensus 763 Rv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G~~ 841 (1202)
||+|||||+.+|++|||||||||||+..+..+.+.|+++.++ |.|+|++|||++ ++..++||+++|++ |+++..|++
T Consensus 141 RvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~a~~~adri~vl~~-G~i~~~g~~ 218 (362)
T 2it1_A 141 RVAIARALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGITTVYVTHDQA-EALAMADRIAVIRE-GEILQVGTP 218 (362)
T ss_dssp HHHHHHHHTTCCSEEEEESGGGGSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHH-HHHHHCSEEEEEET-TEEEEEECH
T ss_pred HHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEEC-CEEEEEcCH
Confidence 999999999999999999999999999999999999999755 999999999986 67889999999985 899999997
Q ss_pred C
Q 000979 842 G 842 (1202)
Q Consensus 842 ~ 842 (1202)
+
T Consensus 219 ~ 219 (362)
T 2it1_A 219 D 219 (362)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-42 Score=398.17 Aligned_cols=214 Identities=26% Similarity=0.343 Sum_probs=188.1
Q ss_pred eEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCC
Q 000979 604 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 683 (1202)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 683 (1202)
++++|++++|. ++++|+||||++++||+++|+||||||||||||+|+|..+ +.+|+|.++|.++.
T Consensus 4 l~~~~l~~~y~-------------~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~--p~~G~I~i~g~~~~ 68 (372)
T 1g29_1 4 VRLVDVWKVFG-------------EVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEE--PSRGQIYIGDKLVA 68 (372)
T ss_dssp EEEEEEEEEET-------------TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSC--CSEEEEEETTEEEE
T ss_pred EEEEeEEEEEC-------------CEEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCC--CCccEEEECCEECc
Confidence 78899999883 3568999999999999999999999999999999999877 45899999998753
Q ss_pred c-------ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCC
Q 000979 684 Q-------ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGL 756 (1202)
Q Consensus 684 ~-------~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~L 756 (1202)
. ...++.+|||+|++.++|.+||+||+.|+...+ ....++.+++++++++.++|.+..++.. ++|
T Consensus 69 ~~~~~~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~r~~-----~~L 140 (372)
T 1g29_1 69 DPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLR---KVPRQEIDQRVREVAELLGLTELLNRKP-----REL 140 (372)
T ss_dssp EGGGTEECCGGGSSEEEECSCCCCCTTSCHHHHHHHHHHHT---TCCHHHHHHHHHHHHHHHTCGGGTTCCG-----GGS
T ss_pred cccccccCCHhHCCEEEEeCCCccCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCCchHhcCCc-----ccC
Confidence 2 123567999999999999999999999987554 2344555677899999999998888764 579
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhcceEEEEecCCEE
Q 000979 757 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQE 835 (1202)
Q Consensus 757 SgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~ 835 (1202)
||||||||+|||||+.+|++|||||||||||+..+..+.+.|+++.++ |.|+|++|||++ ++..++||+++|++ |++
T Consensus 141 SGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~a~~~adri~vl~~-G~i 218 (372)
T 1g29_1 141 SGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQV-EAMTMGDRIAVMNR-GVL 218 (372)
T ss_dssp CHHHHHHHHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHH-HHHHHCSEEEEEET-TEE
T ss_pred CHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHH-HHHHhCCEEEEEeC-CEE
Confidence 999999999999999999999999999999999999999999999755 999999999986 67889999999985 899
Q ss_pred EEEcCCC
Q 000979 836 IYVGPLG 842 (1202)
Q Consensus 836 ~~~G~~~ 842 (1202)
+..|++.
T Consensus 219 ~~~g~~~ 225 (372)
T 1g29_1 219 QQVGSPD 225 (372)
T ss_dssp EEEECHH
T ss_pred EEeCCHH
Confidence 9999974
|
| >1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-42 Score=397.80 Aligned_cols=216 Identities=22% Similarity=0.348 Sum_probs=182.3
Q ss_pred eeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccC
Q 000979 603 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 682 (1202)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 682 (1202)
.++++|++++|. ++.+|+|+||++++||+++|+||||||||||||+|+|..+ +.+|+|.++|.++
T Consensus 11 ~l~~~~l~~~y~-------------~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~--p~~G~I~i~g~~i 75 (372)
T 1v43_A 11 EVKLENLTKRFG-------------NFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEE--PTEGRIYFGDRDV 75 (372)
T ss_dssp CEEEEEEEEEET-------------TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC--CSEEEEEETTEEC
T ss_pred eEEEEEEEEEEC-------------CEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCC--CCceEEEECCEEC
Confidence 388999999883 3468999999999999999999999999999999999877 4589999999886
Q ss_pred Cc-ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHH
Q 000979 683 KQ-ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQR 761 (1202)
Q Consensus 683 ~~-~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqr 761 (1202)
.. ...++.+|||+|++.++|.+||+||+.|+...+ ..+.++.+++++++++.++|.+..++.. ++||||||
T Consensus 76 ~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~r~~-----~~LSGGq~ 147 (372)
T 1v43_A 76 TYLPPKDRNISMVFQSYAVWPHMTVYENIAFPLKIK---KFPKDEIDKRVRWAAELLQIEELLNRYP-----AQLSGGQR 147 (372)
T ss_dssp TTSCGGGGTEEEEEC------CCCHHHHHHTTCC-----CCCHHHHHHHHHHHHHHTTCGGGTTSCT-----TTCCSSCH
T ss_pred CCCChhhCcEEEEecCcccCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCChhHhcCCh-----hhCCHHHH
Confidence 43 223567999999999999999999999875332 2345556677999999999998887763 57999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhcceEEEEecCCEEEEEcC
Q 000979 762 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGP 840 (1202)
Q Consensus 762 qRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G~ 840 (1202)
|||+|||||+.+|++|||||||||||+..+..+.+.|+++.++ |.|+|++|||++ ++..++||+++|++ |+++..|+
T Consensus 148 QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~a~~~adri~vl~~-G~i~~~g~ 225 (372)
T 1v43_A 148 QRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQV-EAMTMGDRIAVMNR-GQLLQIGS 225 (372)
T ss_dssp HHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHH-HHHHHCSEEEEEET-TEEEEEEC
T ss_pred HHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEeCC
Confidence 9999999999999999999999999999999999999999765 999999999986 67889999999985 89999999
Q ss_pred CCc
Q 000979 841 LGR 843 (1202)
Q Consensus 841 ~~~ 843 (1202)
+.+
T Consensus 226 ~~~ 228 (372)
T 1v43_A 226 PTE 228 (372)
T ss_dssp HHH
T ss_pred HHH
Confidence 753
|
| >4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-42 Score=383.67 Aligned_cols=214 Identities=24% Similarity=0.322 Sum_probs=184.8
Q ss_pred eeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccC
Q 000979 603 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 682 (1202)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 682 (1202)
.++++|+++.|. ++.+|+||||++++||+++|+||||||||||+|+|+|...+ .+|+|.++|.++
T Consensus 11 ~l~~~~l~~~~~-------------~~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p--~~G~I~~~g~~~ 75 (266)
T 4g1u_C 11 LLEASHLHYHVQ-------------QQALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSP--SHGECHLLGQNL 75 (266)
T ss_dssp EEEEEEEEEEET-------------TEEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSCC--SSCEEEETTEET
T ss_pred eEEEEeEEEEeC-------------CeeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCC--CCcEEEECCEEC
Confidence 588999999883 35699999999999999999999999999999999998763 479999999986
Q ss_pred Cc---ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHH
Q 000979 683 KQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTE 759 (1202)
Q Consensus 683 ~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgG 759 (1202)
.. ...++.++|++|++.+++.+||+||+.++.... ...+.+++++++++.+++.+..++.+ ++||||
T Consensus 76 ~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~-----~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG 145 (266)
T 4g1u_C 76 NSWQPKALARTRAVMRQYSELAFPFSVSEVIQMGRAPY-----GGSQDRQALQQVMAQTDCLALAQRDY-----RVLSGG 145 (266)
T ss_dssp TTSCHHHHHHHEEEECSCCCCCSCCBHHHHHHGGGTTS-----CSTTHHHHHHHHHHHTTCSTTTTSBG-----GGCCHH
T ss_pred CcCCHHHHhheEEEEecCCccCCCCCHHHHHHhhhhhc-----CcHHHHHHHHHHHHHcCChhHhcCCc-----ccCCHH
Confidence 53 234567899999999888899999999875432 11223456889999999998877764 479999
Q ss_pred HHHHHHHHHHHhh------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhcceEEEEecC
Q 000979 760 QRKRLTIAVELVA------NPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRG 832 (1202)
Q Consensus 760 qrqRv~ia~aL~~------~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~g 832 (1202)
|||||+|||||+. +|++|||||||+|||+.++..+++.|++++++ |+|||++||+++ .+.++|||+++|++
T Consensus 146 q~QRv~iAraL~~~~~~~~~p~lLllDEPts~LD~~~~~~i~~~l~~l~~~~~~tvi~vtHdl~-~~~~~~d~v~vl~~- 223 (266)
T 4g1u_C 146 EQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQEPLAVCCVLHDLN-LAALYADRIMLLAQ- 223 (266)
T ss_dssp HHHHHHHHHHHHHTCCSSCCCEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSSEEEEEECSCHH-HHHHHCSEEEEEET-
T ss_pred HHHHHHHHHHHhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHHHHcCCCEEEEEEcCHH-HHHHhCCEEEEEEC-
Confidence 9999999999999 99999999999999999999999999999765 579999999986 57789999999985
Q ss_pred CEEEEEcCCCc
Q 000979 833 GQEIYVGPLGR 843 (1202)
Q Consensus 833 G~~~~~G~~~~ 843 (1202)
|++++.|++++
T Consensus 224 G~i~~~g~~~~ 234 (266)
T 4g1u_C 224 GKLVACGTPEE 234 (266)
T ss_dssp TEEEEEECHHH
T ss_pred CEEEEEcCHHH
Confidence 89999999754
|
| >3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.6e-42 Score=429.70 Aligned_cols=196 Identities=27% Similarity=0.326 Sum_probs=141.8
Q ss_pred EeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhC---------------CCC--Cc--eEEEEEEEcCccCCcccc----
Q 000979 631 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG---------------RKT--GG--YITGNITISGYPKKQETF---- 687 (1202)
Q Consensus 631 iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g---------------~~~--~~--~~~G~i~~~g~~~~~~~~---- 687 (1202)
+|+|||++|++||++||+||||||||||+++|.+ ... .+ ...|.+.+++.+......
T Consensus 337 ~L~~vsl~I~~Ge~vaIiGpnGsGKSTLl~~i~~~~~~~~~~~~~~~~g~~~~i~gl~~~~~~i~~~~~~~~~~~~~~~~ 416 (670)
T 3ux8_A 337 NLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGLEHLDKVIDIDQSPIGRTPRSNPA 416 (670)
T ss_dssp TCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHCCCSCCCSCSEEECGGGCSEEEECCSSCSCSSTTCCHH
T ss_pred ccccceeEecCCCEEEEEeeCCCCHHHHHHHHHHHHHHHHhhhcccccccccccccccccCceeEeccccCCCCCCcchh
Confidence 5999999999999999999999999999987641 000 00 123567777765431100
Q ss_pred ----------------------------------------cceEEEeecCCCCCC-------------------------
Q 000979 688 ----------------------------------------ARISGYCEQNDIHSP------------------------- 702 (1202)
Q Consensus 688 ----------------------------------------~~~~~~v~q~~~~~~------------------------- 702 (1202)
.+..|++.|+..++|
T Consensus 417 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 496 (670)
T 3ux8_A 417 TYTGVFDDIRDVFASTNEAKVRGYKKGRFSFNVKGGRCEACHGDGIIKIEMHFLPDVYVPCEVCHGKRYNRETLEVTYKG 496 (670)
T ss_dssp HHHTHHHHHHHHHHTSHHHHHHTCCGGGGCTTSTTTBCTTTTTCCC------------CCCTTTTTCCBCHHHHTCCBTT
T ss_pred hhhhhhHHHHHHhcccchhhhcccccccccccCCCCccccccccceEeeecccccccccccccccCcccChhhhheeecC
Confidence 001133333322221
Q ss_pred -------CCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCcc-ccccccCCCCCCCCHHHHHHHHHHHHHhhCC
Q 000979 703 -------FVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPL-RQSLVGLPGVSGLSTEQRKRLTIAVELVANP 774 (1202)
Q Consensus 703 -------~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~-~~~~~~~~~~~~LSgGqrqRv~ia~aL~~~p 774 (1202)
.+||+||+.+... . . ..++..+.++.+++... .+.. +..|||||||||+|||||+.+|
T Consensus 497 ~~~~~~~~ltv~e~l~~~~~------~-~--~~~~~~~~l~~~~l~~~~~~~~-----~~~LSgG~~qrv~iAraL~~~p 562 (670)
T 3ux8_A 497 KNIAEVLDMTVEDALDFFAS------I-P--KIKRKLETLYDVGLGYMKLGQP-----ATTLSGGEAQRVKLAAELHRRS 562 (670)
T ss_dssp BCHHHHHTSBHHHHHHHTTT------C-H--HHHHHHHHHHHTTCTTSBTTCC-----GGGCCHHHHHHHHHHHHHHSCC
T ss_pred CCHHHHhhCCHHHHHHHHHH------h-h--hHHHHHHHHHHcCCchhhccCC-----chhCCHHHHHHHHHHHHHhhCC
Confidence 4799999987431 1 1 12335677888888642 3443 3579999999999999999987
Q ss_pred ---CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEe-----cCCEEEEEcCCC
Q 000979 775 ---SIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK-----RGGQEIYVGPLG 842 (1202)
Q Consensus 775 ---~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~-----~gG~~~~~G~~~ 842 (1202)
+||||||||+|||+.++..+++.|++++++|+|||++|||++ ..+.|||+++|. ++|++++.|+++
T Consensus 563 ~~p~llllDEPt~~LD~~~~~~i~~~l~~l~~~g~tvi~vtHd~~--~~~~~d~i~~l~~~~g~~~G~i~~~g~~~ 636 (670)
T 3ux8_A 563 NGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLD--VIKTADYIIDLGPEGGDRGGQIVAVGTPE 636 (670)
T ss_dssp CSCEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHH--HHTTCSEEEEEESSSGGGCCEEEEEECHH
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH--HHHhCCEEEEecCCcCCCCCEEEEecCHH
Confidence 599999999999999999999999999888999999999975 457899999993 368999999973
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-42 Score=397.42 Aligned_cols=215 Identities=27% Similarity=0.369 Sum_probs=187.7
Q ss_pred eEEeeeEEEEecCchhhhcccccCceE--EeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCcc
Q 000979 604 LTFDEVVYSVDMPEEMKVQGVLEDKLV--LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP 681 (1202)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 681 (1202)
++++|++++|. +++ +|+||||++++||+++|+||||||||||||+|+|..+ +.+|+|.++|.+
T Consensus 4 l~i~~l~~~y~-------------~~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~--p~~G~I~i~g~~ 68 (353)
T 1oxx_K 4 IIVKNVSKVFK-------------KGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDV--PSTGELYFDDRL 68 (353)
T ss_dssp EEEEEEEEEEG-------------GGTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSC--CSEEEEEETTEE
T ss_pred EEEEeEEEEEC-------------CEeeeeEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCC--CCceEEEECCEE
Confidence 78899999883 123 8999999999999999999999999999999999877 458999999987
Q ss_pred CCc------ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCC
Q 000979 682 KKQ------ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSG 755 (1202)
Q Consensus 682 ~~~------~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~ 755 (1202)
+.. ...++.+|||+|++.++|.+||+||+.|+...+ ..+.++.+++++++++.++|.+..++.. ++
T Consensus 69 i~~~~~~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~~~~-----~~ 140 (353)
T 1oxx_K 69 VASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNM---KMSKEEIRKRVEEVAKILDIHHVLNHFP-----RE 140 (353)
T ss_dssp EEETTEESSCGGGSCEEEEETTSCCCTTSCHHHHHHGGGTTS---SCCHHHHHHHHHHHHHHTTCGGGTTSCG-----GG
T ss_pred CcccccccCChhhCCEEEEeCCCccCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchHhcCCh-----hh
Confidence 632 234678999999999999999999999976433 2344555677899999999998888764 57
Q ss_pred CCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhcceEEEEecCCE
Q 000979 756 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQ 834 (1202)
Q Consensus 756 LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~ 834 (1202)
|||||||||+|||||+.+|++|||||||||||+..+..+.+.|+++.++ |.|+|++|||++ ++..++||+++|++ |+
T Consensus 141 LSGGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~~~~~adri~vl~~-G~ 218 (353)
T 1oxx_K 141 LSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPA-DIFAIADRVGVLVK-GK 218 (353)
T ss_dssp SCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHH-HHHHHCSEEEEEET-TE
T ss_pred CCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CE
Confidence 9999999999999999999999999999999999999999999999754 999999999986 67889999999985 89
Q ss_pred EEEEcCCCc
Q 000979 835 EIYVGPLGR 843 (1202)
Q Consensus 835 ~~~~G~~~~ 843 (1202)
++..|++++
T Consensus 219 i~~~g~~~~ 227 (353)
T 1oxx_K 219 LVQVGKPED 227 (353)
T ss_dssp EEEEECHHH
T ss_pred EEEEcCHHH
Confidence 999998753
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-42 Score=375.27 Aligned_cols=214 Identities=22% Similarity=0.324 Sum_probs=181.4
Q ss_pred eeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccC
Q 000979 603 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 682 (1202)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 682 (1202)
.++++|++++|. ++++|+||||++++||+++|+||||||||||+|+|+|..+ +.+|+|.++|.++
T Consensus 6 ~l~~~~l~~~y~-------------~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~ 70 (240)
T 1ji0_A 6 VLEVQSLHVYYG-------------AIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVR--AQKGKIIFNGQDI 70 (240)
T ss_dssp EEEEEEEEEEET-------------TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEEC
T ss_pred eEEEEeEEEEEC-------------CeeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEEC
Confidence 488999999883 2468999999999999999999999999999999999876 4589999999886
Q ss_pred Ccc---c-ccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcC-CCccccccccCCCCCCCC
Q 000979 683 KQE---T-FARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVE-LNPLRQSLVGLPGVSGLS 757 (1202)
Q Consensus 683 ~~~---~-~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~-l~~~~~~~~~~~~~~~LS 757 (1202)
... . .++.++||+|++.+++.+||+||+.++.... ...++.++.++++++.++ +.+..++. ++.||
T Consensus 71 ~~~~~~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~----~~~~~~~~~~~~~l~~~~~l~~~~~~~-----~~~LS 141 (240)
T 1ji0_A 71 TNKPAHVINRMGIALVPEGRRIFPELTVYENLMMGAYNR----KDKEGIKRDLEWIFSLFPRLKERLKQL-----GGTLS 141 (240)
T ss_dssp TTCCHHHHHHTTEEEECSSCCCCTTSBHHHHHHGGGTTC----CCSSHHHHHHHHHHHHCHHHHTTTTSB-----SSSSC
T ss_pred CCCCHHHHHhCCEEEEecCCccCCCCcHHHHHHHhhhcC----CCHHHHHHHHHHHHHHcccHhhHhcCC-----hhhCC
Confidence 432 1 2345999999999999999999998864211 112233456788999994 87766665 35799
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCCEEEE
Q 000979 758 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIY 837 (1202)
Q Consensus 758 gGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~ 837 (1202)
|||||||+|||||+.+|++|+|||||+|||+.++..+++.|++++++|+|||++||+++ ++.+.|||+++|++ |+++.
T Consensus 142 gGq~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tvi~vtHd~~-~~~~~~d~v~~l~~-G~i~~ 219 (240)
T 1ji0_A 142 GGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNAL-GALKVAHYGYVLET-GQIVL 219 (240)
T ss_dssp HHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHH-HHHHHCSEEEEEET-TEEEE
T ss_pred HHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhCCEEEEEEC-CEEEE
Confidence 99999999999999999999999999999999999999999999777999999999975 57789999999985 89999
Q ss_pred EcCCC
Q 000979 838 VGPLG 842 (1202)
Q Consensus 838 ~G~~~ 842 (1202)
.|+++
T Consensus 220 ~g~~~ 224 (240)
T 1ji0_A 220 EGKAS 224 (240)
T ss_dssp EEEHH
T ss_pred EcCHH
Confidence 99864
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-42 Score=391.68 Aligned_cols=210 Identities=21% Similarity=0.285 Sum_probs=183.3
Q ss_pred eEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCC
Q 000979 604 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 683 (1202)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 683 (1202)
++++|++++|. ++ +|+|+||++++||+++|+||||||||||||+|+|..+ +.+|+|.++|.++.
T Consensus 2 l~~~~l~~~y~-------------~~-~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~--p~~G~I~~~g~~i~ 65 (348)
T 3d31_A 2 IEIESLSRKWK-------------NF-SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHV--PDSGRILLDGKDVT 65 (348)
T ss_dssp EEEEEEEEECS-------------SC-EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSC--CSEEEEEETTEECT
T ss_pred EEEEEEEEEEC-------------CE-EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCC--CCCcEEEECCEECC
Confidence 57889998872 24 8999999999999999999999999999999999877 45899999998864
Q ss_pred c-ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHH
Q 000979 684 Q-ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRK 762 (1202)
Q Consensus 684 ~-~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrq 762 (1202)
. ...++.+|||+|++.++|.+||+||+.|+...+.. ..+ ++++++++.++|.+..++.. ++|||||||
T Consensus 66 ~~~~~~r~ig~v~Q~~~l~~~ltv~enl~~~~~~~~~---~~~---~~v~~~l~~~~L~~~~~~~~-----~~LSgGq~Q 134 (348)
T 3d31_A 66 DLSPEKHDIAFVYQNYSLFPHMNVKKNLEFGMRMKKI---KDP---KRVLDTARDLKIEHLLDRNP-----LTLSGGEQQ 134 (348)
T ss_dssp TSCHHHHTCEEECTTCCCCTTSCHHHHHHHHHHHHCC---CCH---HHHHHHHHHTTCTTTTTSCG-----GGSCHHHHH
T ss_pred CCchhhCcEEEEecCcccCCCCCHHHHHHHHHHHcCC---CHH---HHHHHHHHHcCCchHhcCCh-----hhCCHHHHH
Confidence 3 23456799999999999999999999998754321 111 45889999999998888764 579999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCCHHHHHhcceEEEEecCCEEEEEcCC
Q 000979 763 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPL 841 (1202)
Q Consensus 763 Rv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G~~ 841 (1202)
||+|||||+.+|++|||||||||||+..+..+.+.|+++.+ .|.|+|++|||++ ++..++||+++|++ |+++..|++
T Consensus 135 RvalAraL~~~P~lLLLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~-~~~~~adri~vl~~-G~i~~~g~~ 212 (348)
T 3d31_A 135 RVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQT-EARIMADRIAVVMD-GKLIQVGKP 212 (348)
T ss_dssp HHHHHHHTTSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHH-HHHHHCSEEEEESS-SCEEEEECH
T ss_pred HHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEECCH
Confidence 99999999999999999999999999999999999999965 4999999999985 67889999999985 899999987
Q ss_pred C
Q 000979 842 G 842 (1202)
Q Consensus 842 ~ 842 (1202)
+
T Consensus 213 ~ 213 (348)
T 3d31_A 213 E 213 (348)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-41 Score=370.45 Aligned_cols=219 Identities=26% Similarity=0.273 Sum_probs=176.0
Q ss_pred eEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCC
Q 000979 604 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 683 (1202)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 683 (1202)
++++||+++|. ++.+|+||||++++||+++|+||||||||||+|+|+|.....+.+|+|.++|.++.
T Consensus 4 l~~~~l~~~y~-------------~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~~~ 70 (250)
T 2d2e_A 4 LEIRDLWASID-------------GETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENIL 70 (250)
T ss_dssp EEEEEEEEEET-------------TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEETTEECT
T ss_pred EEEEeEEEEEC-------------CEEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEECC
Confidence 78999999883 24689999999999999999999999999999999997211267999999998864
Q ss_pred cc---c-ccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCC-CccccccccCCCCCC-CC
Q 000979 684 QE---T-FARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVEL-NPLRQSLVGLPGVSG-LS 757 (1202)
Q Consensus 684 ~~---~-~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l-~~~~~~~~~~~~~~~-LS 757 (1202)
.. . .++.++|++|++.+++.+||+||+.+............++.+++++++++.+++ .+..++.+ .. ||
T Consensus 71 ~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~-----~~~LS 145 (250)
T 2d2e_A 71 ELSPDERARKGLFLAFQYPVEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYLSRYL-----NEGFS 145 (250)
T ss_dssp TSCHHHHHHTTBCCCCCCCC-CCSCBHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGGGSBT-----TCC--
T ss_pred CCCHHHHHhCcEEEeccCCccccCCCHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCc-----ccCCC
Confidence 31 1 134589999999999999999999886532111112233345668899999999 47777653 46 99
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHh-cceEEEEecCCEEE
Q 000979 758 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEA-FDELFLMKRGGQEI 836 (1202)
Q Consensus 758 gGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~-~d~v~~l~~gG~~~ 836 (1202)
||||||++|||||+.+|++|||||||+|||+.++..+++.|++++++|+|||++||+++ .+... +|++++|++ |+++
T Consensus 146 gGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~-~~~~~~~d~v~~l~~-G~i~ 223 (250)
T 2d2e_A 146 GGEKKRNEILQLLVLEPTYAVLDETDSGLDIDALKVVARGVNAMRGPNFGALVITHYQR-ILNYIQPDKVHVMMD-GRVV 223 (250)
T ss_dssp --HHHHHHHHHHHHHCCSEEEEECGGGTTCHHHHHHHHHHHHHHCSTTCEEEEECSSSG-GGGTSCCSEEEEEET-TEEE
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhcCCEEEEEEC-CEEE
Confidence 99999999999999999999999999999999999999999998767999999999986 45556 599999985 8999
Q ss_pred EEcCCC
Q 000979 837 YVGPLG 842 (1202)
Q Consensus 837 ~~G~~~ 842 (1202)
+.|+++
T Consensus 224 ~~g~~~ 229 (250)
T 2d2e_A 224 ATGGPE 229 (250)
T ss_dssp EEESHH
T ss_pred EEeCHH
Confidence 999863
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-41 Score=378.81 Aligned_cols=246 Identities=23% Similarity=0.296 Sum_probs=186.9
Q ss_pred CccccccccchhhhhhhhhccCCCC-CCCccCCCCceeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEE
Q 000979 568 DDIRGQQSSSQSLSLAEAEASRPKK-KGMVLPFEPHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTA 646 (1202)
Q Consensus 568 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~a 646 (1202)
+..++..+..++++..+........ .....+.....++++||+|+|+ +++.+|+||||+|++||++|
T Consensus 17 ~~~~~~~~~~ri~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~vs~~y~------------~~~~vL~~isl~i~~Ge~va 84 (306)
T 3nh6_A 17 RGSHMFIDMENMFDLLKEETEVKDLPGAGPLRFQKGRIEFENVHFSYA------------DGRETLQDVSFTVMPGQTLA 84 (306)
T ss_dssp --CCTTCCHHHHHHHHHHHHSCCCCTTCBCCCCSSCCEEEEEEEEESS------------TTCEEEEEEEEEECTTCEEE
T ss_pred hHHHHHHHHHHHHHHHhCCccccccccccccCCCCCeEEEEEEEEEcC------------CCCceeeeeeEEEcCCCEEE
Confidence 3333444555565555433222111 1111222345799999999984 23468999999999999999
Q ss_pred EEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCCc---ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCC
Q 000979 647 LMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVD 723 (1202)
Q Consensus 647 l~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~ 723 (1202)
|+||||||||||+++|+|... +.+|+|.++|.++.. ..+++.++||+|++.+++ .||+||+.++.. ...
T Consensus 85 ivG~sGsGKSTLl~ll~gl~~--p~~G~I~i~G~~i~~~~~~~~r~~i~~v~Q~~~lf~-~Tv~eNi~~~~~-----~~~ 156 (306)
T 3nh6_A 85 LVGPSGAGKSTILRLLFRFYD--ISSGCIRIDGQDISQVTQASLRSHIGVVPQDTVLFN-DTIADNIRYGRV-----TAG 156 (306)
T ss_dssp EESSSCHHHHHHHHHHTTSSC--CSEEEEEETTEETTSBCHHHHHHTEEEECSSCCCCS-EEHHHHHHTTST-----TCC
T ss_pred EECCCCchHHHHHHHHHcCCC--CCCcEEEECCEEcccCCHHHHhcceEEEecCCccCc-ccHHHHHHhhcc-----cCC
Confidence 999999999999999999877 458999999998754 345678999999998885 699999988632 122
Q ss_pred HHHHHHHHHHHHHHcCCCc-------cccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHH
Q 000979 724 SETRKMFIDEVMELVELNP-------LRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR 796 (1202)
Q Consensus 724 ~~~~~~~~~~~l~~l~l~~-------~~~~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~ 796 (1202)
.+ .++++++.+++.+ -.++.++.. ...|||||||||+|||||+.+|+||||||||||||+.++..+++
T Consensus 157 ~~----~~~~~~~~~~l~~~i~~lp~gl~t~~~~~-g~~LSGGqrQRvaiARAL~~~p~iLlLDEPts~LD~~~~~~i~~ 231 (306)
T 3nh6_A 157 ND----EVEAAAQAAGIHDAIMAFPEGYRTQVGER-GLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQA 231 (306)
T ss_dssp HH----HHHHHHHHHTCHHHHHHSTTGGGCEESTT-SBCCCHHHHHHHHHHHHHHHCCSEEEEECCSSCCCHHHHHHHHH
T ss_pred HH----HHHHHHHHhCcHHHHHhccchhhhHhcCC-cCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHH
Confidence 22 2445555555543 234555544 35799999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCCEEEEEcCCC
Q 000979 797 TVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLG 842 (1202)
Q Consensus 797 ~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G~~~ 842 (1202)
.|+++. +++|+|++||+++ .+ ..||+|++|++ |+++..|+++
T Consensus 232 ~l~~l~-~~~Tvi~itH~l~-~~-~~aD~i~vl~~-G~iv~~G~~~ 273 (306)
T 3nh6_A 232 SLAKVC-ANRTTIVVAHRLS-TV-VNADQILVIKD-GCIVERGRHE 273 (306)
T ss_dssp HHHHHH-TTSEEEEECCSHH-HH-HTCSEEEEEET-TEEEEEECHH
T ss_pred HHHHHc-CCCEEEEEEcChH-HH-HcCCEEEEEEC-CEEEEECCHH
Confidence 999985 4799999999986 34 55999999985 8999999974
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-41 Score=374.02 Aligned_cols=217 Identities=22% Similarity=0.326 Sum_probs=180.9
Q ss_pred eEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCC
Q 000979 604 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 683 (1202)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 683 (1202)
++++|++++|.... ...+.+|+||||++++||+++|+||||||||||+|+|+|..+ +.+|+|.++|.+..
T Consensus 3 l~~~~l~~~y~~~~--------~~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~--p~~G~I~~~g~~~~ 72 (266)
T 2yz2_A 3 IEVVNVSHIFHRGT--------PLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIE--PTSGDVLYDGERKK 72 (266)
T ss_dssp EEEEEEEEEESTTS--------TTCEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEECC
T ss_pred EEEEEEEEEecCCC--------ccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CCCcEEEECCEECc
Confidence 68899999884100 001568999999999999999999999999999999999876 45899999998765
Q ss_pred cccccceEEEeecCC-CCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCC--ccccccccCCCCCCCCHHH
Q 000979 684 QETFARISGYCEQND-IHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELN--PLRQSLVGLPGVSGLSTEQ 760 (1202)
Q Consensus 684 ~~~~~~~~~~v~q~~-~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~--~~~~~~~~~~~~~~LSgGq 760 (1202)
....++.+|||+|++ ..++.+||+||+.++..... ..++.+++++++++.+|+. +..++.+ +.|||||
T Consensus 73 ~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~----~~~~~~~~~~~~l~~~gl~~~~~~~~~~-----~~LSgGq 143 (266)
T 2yz2_A 73 GYEIRRNIGIAFQYPEDQFFAERVFDEVAFAVKNFY----PDRDPVPLVKKAMEFVGLDFDSFKDRVP-----FFLSGGE 143 (266)
T ss_dssp HHHHGGGEEEECSSGGGGCCCSSHHHHHHHTTTTTC----TTSCSHHHHHHHHHHTTCCHHHHTTCCG-----GGSCHHH
T ss_pred hHHhhhhEEEEeccchhhcCCCcHHHHHHHHHHhcC----CHHHHHHHHHHHHHHcCcCCcccccCCh-----hhCCHHH
Confidence 334466799999995 46677999999998643211 1111234578999999998 7777654 5799999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCCEEEEEcC
Q 000979 761 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGP 840 (1202)
Q Consensus 761 rqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G~ 840 (1202)
||||+|||||+.+|++|+|||||+|||+.++..+++.|++++++|+|||++||+++ .+...||++++|++ |+++..|+
T Consensus 144 ~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tii~vtHd~~-~~~~~~d~v~~l~~-G~i~~~g~ 221 (266)
T 2yz2_A 144 KRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHDIE-TVINHVDRVVVLEK-GKKVFDGT 221 (266)
T ss_dssp HHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCT-TTGGGCSEEEEEET-TEEEEEEE
T ss_pred HHHHHHHHHHHcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEeCC
Confidence 99999999999999999999999999999999999999999767999999999997 46678999999985 89999997
Q ss_pred C
Q 000979 841 L 841 (1202)
Q Consensus 841 ~ 841 (1202)
+
T Consensus 222 ~ 222 (266)
T 2yz2_A 222 R 222 (266)
T ss_dssp H
T ss_pred H
Confidence 5
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-41 Score=367.39 Aligned_cols=208 Identities=20% Similarity=0.303 Sum_probs=178.9
Q ss_pred eEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCC
Q 000979 604 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 683 (1202)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 683 (1202)
++++|++++|. + +|+||||++++ |+++|+||||||||||+|+|+|..+ +.+|+|.++|.++.
T Consensus 2 l~~~~l~~~y~-------------~--~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~ 63 (240)
T 2onk_A 2 FLKVRAEKRLG-------------N--FRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVK--PDRGEVRLNGADIT 63 (240)
T ss_dssp CEEEEEEEEET-------------T--EEEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSC--CSEEEEEETTEECT
T ss_pred EEEEEEEEEeC-------------C--EEeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEECC
Confidence 57889999883 1 39999999999 9999999999999999999999876 44899999998764
Q ss_pred c-ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHH
Q 000979 684 Q-ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRK 762 (1202)
Q Consensus 684 ~-~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrq 762 (1202)
. ...++.+|||+|++.+++.+||+||+.++...+ .....+++++++++.+++.+..++.+ .+|||||||
T Consensus 64 ~~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~-----~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgGqkq 133 (240)
T 2onk_A 64 PLPPERRGIGFVPQDYALFPHLSVYRNIAYGLRNV-----ERVERDRRVREMAEKLGIAHLLDRKP-----ARLSGGERQ 133 (240)
T ss_dssp TSCTTTSCCBCCCSSCCCCTTSCHHHHHHTTCTTS-----CHHHHHHHHHHHHHTTTCTTTTTCCG-----GGSCHHHHH
T ss_pred cCchhhCcEEEEcCCCccCCCCcHHHHHHHHHHHc-----CCchHHHHHHHHHHHcCCHHHhcCCh-----hhCCHHHHH
Confidence 3 234567999999999999999999998864221 11222566889999999988777764 479999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhcceEEEEecCCEEEEEcCC
Q 000979 763 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPL 841 (1202)
Q Consensus 763 Rv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G~~ 841 (1202)
|++|||||+.+|++|+|||||+|||+.++..+++.|++++++ |+|||++||+++ ++.+.||++++|++ |+++..|++
T Consensus 134 Rv~lAral~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~~g~tvi~vtHd~~-~~~~~~d~i~~l~~-G~i~~~g~~ 211 (240)
T 2onk_A 134 RVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLI-EAAMLADEVAVMLN-GRIVEKGKL 211 (240)
T ss_dssp HHHHHHHHTTCCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHH-HHHHHCSEEEEEET-TEEEEEECH
T ss_pred HHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEECCH
Confidence 999999999999999999999999999999999999999754 999999999985 57789999999985 899999986
|
| >2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-40 Score=368.28 Aligned_cols=221 Identities=24% Similarity=0.279 Sum_probs=181.4
Q ss_pred eeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccC
Q 000979 603 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 682 (1202)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 682 (1202)
.++++||+++|. ++.+|+||||++++||+++|+||||||||||+|+|+|.....+.+|+|.++|.++
T Consensus 20 ~l~~~~l~~~y~-------------~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~i 86 (267)
T 2zu0_C 20 MLSIKDLHVSVE-------------DKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDL 86 (267)
T ss_dssp CEEEEEEEEEET-------------TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEEG
T ss_pred eEEEEeEEEEEC-------------CEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEEC
Confidence 589999999883 2468999999999999999999999999999999999842236789999999876
Q ss_pred Ccc---cc-cceEEEeecCCCCCCCCCHHHHHHHHHH-cc---CCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCCCC
Q 000979 683 KQE---TF-ARISGYCEQNDIHSPFVTIYESLLFSAW-LR---LSPEVDSETRKMFIDEVMELVELN-PLRQSLVGLPGV 753 (1202)
Q Consensus 683 ~~~---~~-~~~~~~v~q~~~~~~~lTv~e~l~~~~~-~~---~~~~~~~~~~~~~~~~~l~~l~l~-~~~~~~~~~~~~ 753 (1202)
... .. ++.++||+|++.+++.+||.||+.+... .+ .....+.++.+++++++++.+++. +..++.++
T Consensus 87 ~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~---- 162 (267)
T 2zu0_C 87 LALSPEDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDLLTRSVN---- 162 (267)
T ss_dssp GGSCHHHHHHHTEEEECSSCCCCTTCBHHHHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHHHHTTCCTTTTTSBTT----
T ss_pred CcCCHHHHhhCCEEEEccCccccccccHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcc----
Confidence 431 11 3358999999999999999999987541 11 111223444456788999999996 45565431
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHh-cceEEEEecC
Q 000979 754 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEA-FDELFLMKRG 832 (1202)
Q Consensus 754 ~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~-~d~v~~l~~g 832 (1202)
.+|||||||||+|||||+.+|+||||||||+|||+.++..+++.|++++++|+|||++||+++ .+... ||++++|.+
T Consensus 163 ~~LSgGq~QRv~iAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~-~~~~~~~d~v~~l~~- 240 (267)
T 2zu0_C 163 VGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTHYQR-ILDYIKPDYVHVLYQ- 240 (267)
T ss_dssp TTCCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHTTCCSSCEEEEECSSGG-GGGTSCCSEEEEEET-
T ss_pred cCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeeCHH-HHHhhcCCEEEEEEC-
Confidence 249999999999999999999999999999999999999999999998767999999999986 34454 899999985
Q ss_pred CEEEEEcCCC
Q 000979 833 GQEIYVGPLG 842 (1202)
Q Consensus 833 G~~~~~G~~~ 842 (1202)
|++++.|+++
T Consensus 241 G~i~~~g~~~ 250 (267)
T 2zu0_C 241 GRIVKSGDFT 250 (267)
T ss_dssp TEEEEEECTT
T ss_pred CEEEEEcCHH
Confidence 8999999974
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-41 Score=376.54 Aligned_cols=220 Identities=22% Similarity=0.349 Sum_probs=180.9
Q ss_pred ceeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCcc
Q 000979 602 HSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP 681 (1202)
Q Consensus 602 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 681 (1202)
..++++|++++|. ++++|+||||++++||+++|+||||||||||+|+|+|..+ +.+|+|.++|.+
T Consensus 20 ~~l~~~~l~~~y~-------------~~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~--p~~G~I~~~g~~ 84 (279)
T 2ihy_A 20 MLIQLDQIGRMKQ-------------GKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEP--ATSGTVNLFGKM 84 (279)
T ss_dssp EEEEEEEEEEEET-------------TEEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSC--CSEEEEEETTBC
T ss_pred ceEEEEeEEEEEC-------------CEEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CCCeEEEECCEE
Confidence 3589999999883 2468999999999999999999999999999999999876 448999999987
Q ss_pred CC--c---ccccceEEEeecCCCCC--CCCCHHHHHHHHHHccCC-CCCCHHHHHHHHHHHHHHcCCCccccccccCCCC
Q 000979 682 KK--Q---ETFARISGYCEQNDIHS--PFVTIYESLLFSAWLRLS-PEVDSETRKMFIDEVMELVELNPLRQSLVGLPGV 753 (1202)
Q Consensus 682 ~~--~---~~~~~~~~~v~q~~~~~--~~lTv~e~l~~~~~~~~~-~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~ 753 (1202)
+. . ...++.++||+|++.+. +.+||+||+.++...... .....++.+++++++++.+++.+..++.+
T Consensus 85 ~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~----- 159 (279)
T 2ihy_A 85 PGKVGYSAETVRQHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAKAQQYI----- 159 (279)
T ss_dssp CC---CCHHHHHTTEEEECHHHHTTSCTTSBHHHHHHTTC---------CCHHHHHHHHHHHHHTTCGGGTTSBG-----
T ss_pred cccccCCHHHHcCcEEEEEcCcccccCCCCCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCChhHhcCCh-----
Confidence 64 2 23456799999987543 356999999875321000 01112233456889999999988777764
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEE--EEEecCCCHHHHHhcceEEEEec
Q 000979 754 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTV--VCTIHQPSIDIFEAFDELFLMKR 831 (1202)
Q Consensus 754 ~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tv--i~~~H~~~~~~~~~~d~v~~l~~ 831 (1202)
.+|||||||||+|||||+.+|++|||||||+|||+.++..+++.|++++++|+|| |++||+++ ++.+.||++++|++
T Consensus 160 ~~LSgGqkqRv~lAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tv~~iivtHd~~-~~~~~~d~v~~l~~ 238 (279)
T 2ihy_A 160 GYLSTGEKQRVMIARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAMIYVTHFIE-EITANFSKILLLKD 238 (279)
T ss_dssp GGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHCTTCEEEEEESCGG-GCCTTCCEEEEEET
T ss_pred hhCCHHHHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHHHCCCEEEEEEEecCHH-HHHHhCCEEEEEEC
Confidence 4799999999999999999999999999999999999999999999997669999 99999986 46788999999985
Q ss_pred CCEEEEEcCCCc
Q 000979 832 GGQEIYVGPLGR 843 (1202)
Q Consensus 832 gG~~~~~G~~~~ 843 (1202)
|++++.|++++
T Consensus 239 -G~i~~~g~~~~ 249 (279)
T 2ihy_A 239 -GQSIQQGAVED 249 (279)
T ss_dssp -TEEEEEEEHHH
T ss_pred -CEEEEECCHHH
Confidence 89999998753
|
| >3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.3e-40 Score=414.04 Aligned_cols=197 Identities=26% Similarity=0.387 Sum_probs=146.1
Q ss_pred EeecceEEEeCCeEEEEEcCCCCCHHHHH---------HHHhCCCC-C---ceEEE------EEEEcCccCCccc-----
Q 000979 631 LLNGVSGAFRPGVLTALMGVSGAGKTTLM---------DVLAGRKT-G---GYITG------NITISGYPKKQET----- 686 (1202)
Q Consensus 631 iL~~vs~~i~~Ge~~al~G~sGaGKSTLl---------~~l~g~~~-~---~~~~G------~i~~~g~~~~~~~----- 686 (1202)
.|+|||++|++||+++|+||||||||||+ +.+.+... . ....| .+.+++.++....
T Consensus 599 ~Lk~Vsl~I~~Geiv~I~G~SGSGKSTLl~~~l~~~l~~~l~~~~~~~g~~~~~~G~~~i~~~i~idq~pig~~~rs~~a 678 (916)
T 3pih_A 599 NLKNIDVEIPLGVFVCVTGVSGSGKSSLVMETLYPALMNLLHKTKLPAGEFDSIEGHENIDKMIAIDQSPIGRTPRSNPA 678 (916)
T ss_dssp TCCSEEEEEESSSEEEEECSTTSSHHHHHHHTHHHHHHHHHHCCCCCCCCCSEEECGGGCCEEEEECSCCCCCCTTCCHH
T ss_pred cccccceEEcCCcEEEEEccCCCChhhhHHHHHHHHHHHHhccccccccccccccccccccceEeecccccccccccccc
Confidence 48999999999999999999999999997 44444211 1 12233 3455544321100
Q ss_pred ---------------------------------------ccceEEEeecCCCCCC-------------------------
Q 000979 687 ---------------------------------------FARISGYCEQNDIHSP------------------------- 702 (1202)
Q Consensus 687 ---------------------------------------~~~~~~~v~q~~~~~~------------------------- 702 (1202)
..+..|++.++..++|
T Consensus 679 t~~~~~~~ir~lfa~~~~a~~~g~~~~~fs~n~~~grc~~c~g~G~i~~e~~flp~~~v~c~~c~g~r~~~e~l~i~~~g 758 (916)
T 3pih_A 679 TYTKVFDEIRSLFAMTPAAKARGYNKSRFSFNLKGGRCEACQGQGYVKIEMLFLPDVYVECDVCKGKRYNRETLEITYKG 758 (916)
T ss_dssp HHSSHHHHHHHHHTTSHHHHHSSCCGGGGCTTSTTTBCTTTTTSSEEEECCTTSCCEEEECTTTTTSCBCTTGGGCCBTT
T ss_pred chhhhHHHHHHHhccchHHHhcccccccccccccccccccccCcceEEEeeeccCcceeecccccccccchhhhhhhhcc
Confidence 0012467777665554
Q ss_pred -------CCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCC-
Q 000979 703 -------FVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANP- 774 (1202)
Q Consensus 703 -------~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~aL~~~p- 774 (1202)
.+||.|++.|... . ....++.++++.+||.... .+.+ ...|||||||||+|||||+++|
T Consensus 759 ~~i~~vl~~tv~eal~f~~~------~---~~~~~~~~~L~~vGL~~~~---lgq~-~~~LSGGErQRV~LAraL~~~p~ 825 (916)
T 3pih_A 759 KNISDILDMTVDEALEFFKN------I---PSIKRTLQVLHDVGLGYVK---LGQP-ATTLSGGEAQRIKLASELRKRDT 825 (916)
T ss_dssp BCHHHHHSSBHHHHHHHTTT------C---HHHHHHHHHHHHTTGGGSB---TTCC-STTCCHHHHHHHHHHHHHTSCCC
T ss_pred CCHHHHhhCCHHHHHHHHhc------c---hhHHHHHHHHHHcCCchhh---ccCC-ccCCCHHHHHHHHHHHHHhhCCC
Confidence 3688888887431 1 1223467889999996432 1222 3579999999999999999876
Q ss_pred --CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEe-----cCCEEEEEcCCC
Q 000979 775 --SIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK-----RGGQEIYVGPLG 842 (1202)
Q Consensus 775 --~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~-----~gG~~~~~G~~~ 842 (1202)
+||||||||+|||+.++..+++.|++++++|.|||+++|+++ ....+|++++|. ++|++++.|+++
T Consensus 826 ~p~LLILDEPTsGLD~~~~~~L~~lL~~L~~~G~TVIvI~HdL~--~i~~ADrIivLgp~gg~~~G~Iv~~Gtpe 898 (916)
T 3pih_A 826 GRTLYILDEPTVGLHFEDVRKLVEVLHRLVDRGNTVIVIEHNLD--VIKNADHIIDLGPEGGKEGGYIVATGTPE 898 (916)
T ss_dssp SSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHH--HHTTCSEEEEEESSSGGGCCEEEEEESHH
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH--HHHhCCEEEEecCCCCCCCCEEEEEcCHH
Confidence 799999999999999999999999999888999999999974 456799999993 479999999974
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.6e-40 Score=360.66 Aligned_cols=209 Identities=22% Similarity=0.336 Sum_probs=175.7
Q ss_pred eeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccC
Q 000979 603 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 682 (1202)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 682 (1202)
.++++|++++|. +++.+|+|+||++++||+++|+||||||||||+|+|+|..+ +.+|+|.
T Consensus 4 ~l~i~~l~~~y~------------~~~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--p~~G~I~------ 63 (253)
T 2nq2_C 4 ALSVENLGFYYQ------------AENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHR--PIQGKIE------ 63 (253)
T ss_dssp EEEEEEEEEEET------------TTTEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSC--CSEEEEE------
T ss_pred eEEEeeEEEEeC------------CCCeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEE------
Confidence 378999999883 02458999999999999999999999999999999999876 3489987
Q ss_pred CcccccceEEEeecCCCCCCCCCHHHHHHHHHHccCC-CCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHH
Q 000979 683 KQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLS-PEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQR 761 (1202)
Q Consensus 683 ~~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~-~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqr 761 (1202)
.++.++||+|++.+++.+||+||+.++...... ......+.+++++++++.+++.+..++.+ ..||||||
T Consensus 64 ----~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgGq~ 134 (253)
T 2nq2_C 64 ----VYQSIGFVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLTHLAKREF-----TSLSGGQR 134 (253)
T ss_dssp ----ECSCEEEECSCCCCSSCCBHHHHHHGGGGGGSCTTCCCCHHHHHHHHHHHHHTTCGGGTTSBG-----GGSCHHHH
T ss_pred ----EeccEEEEcCCCccCCCCCHHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHcCChHHhcCCh-----hhCCHHHH
Confidence 245689999999999899999999986432111 00112233456889999999988777653 57999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhcceEEEEecCCEEEEEcC
Q 000979 762 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGP 840 (1202)
Q Consensus 762 qRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G~ 840 (1202)
|||+|||||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||+++ .+.+.||++++|++ |+ ++.|+
T Consensus 135 qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~-~~~~~~d~v~~l~~-G~-~~~g~ 211 (253)
T 2nq2_C 135 QLILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPN-QVVAIANKTLLLNK-QN-FKFGE 211 (253)
T ss_dssp HHHHHHHHHHTTCSEEEESSSSTTSCHHHHHHHHHHHHHHHHTSCCEEEEEESCHH-HHHHHCSEEEEEET-TE-EEEEE
T ss_pred HHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEeC-Ce-EecCC
Confidence 9999999999999999999999999999999999999999776 999999999986 46789999999985 78 89898
Q ss_pred CCc
Q 000979 841 LGR 843 (1202)
Q Consensus 841 ~~~ 843 (1202)
+++
T Consensus 212 ~~~ 214 (253)
T 2nq2_C 212 TRN 214 (253)
T ss_dssp HHH
T ss_pred HHH
Confidence 653
|
| >2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-39 Score=406.67 Aligned_cols=195 Identities=29% Similarity=0.371 Sum_probs=148.2
Q ss_pred EeecceEEEeCCeEEEEEcCCCCCHHHHHHHHh-C----C-----CCCc---eEEE------EEEEcCccCCccc-----
Q 000979 631 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLA-G----R-----KTGG---YITG------NITISGYPKKQET----- 686 (1202)
Q Consensus 631 iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~-g----~-----~~~~---~~~G------~i~~~g~~~~~~~----- 686 (1202)
.|+|||++|++||+++|+|+||||||||+++|. | . ..++ ...| .|.+++.++....
T Consensus 639 ~Lk~Vsl~I~~Geiv~I~G~nGSGKSTLl~~ll~g~l~~~l~~~~~~~G~~~~i~G~~~~~~~I~idq~pig~~~rs~pa 718 (972)
T 2r6f_A 639 NLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGLEHLDKVIDIDQSPIGRTPRSNPA 718 (972)
T ss_dssp SCCSEEEEEESSSEEECCBCTTSSHHHHHTTTHHHHHHHHHHCCCCCCCSCSEEECGGGCSEEEEECSSCSCSSTTCCHH
T ss_pred ccccceEEEcCCCEEEEEcCCCCCHHHHHHHHHHHHHHHhhcCCCCCCCceeeeccccccceEEEEcCcccccCccccch
Confidence 499999999999999999999999999999863 2 1 1222 2344 5888887753110
Q ss_pred -----------------ccceEEEeecCCCCC----------------------C-------------------------
Q 000979 687 -----------------FARISGYCEQNDIHS----------------------P------------------------- 702 (1202)
Q Consensus 687 -----------------~~~~~~~v~q~~~~~----------------------~------------------------- 702 (1202)
..+..||++|...+. +
T Consensus 719 ty~~v~d~ir~lfa~~~ear~~Gy~~~~fsfn~~ggrC~~C~g~G~i~~em~fl~~v~~~ce~c~G~r~~~e~l~v~~~g 798 (972)
T 2r6f_A 719 TYTGVFDDIRDVFASTNEAKVRGYKKGRFSFNVKGGRCEACHGDGIIKIEMHFLPDVYVPCEVCHGKRYNRETLEVTYKG 798 (972)
T ss_dssp HHHTHHHHHHHHHHTSHHHHHTTCCTTTTCTTSTTTBCTTTTTCSEEEECCSSSCCEEEECTTTTTCCBCTTGGGCCBTT
T ss_pred hhhhHHHHHHHHhccCHHHHHhcccccccccccccccccccccccceeeehhccccccccccccccccccchhhhhhccC
Confidence 012346666642211 1
Q ss_pred -------CCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCCCCCCCCHHHHHHHHHHHHHhhCC
Q 000979 703 -------FVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP-LRQSLVGLPGVSGLSTEQRKRLTIAVELVANP 774 (1202)
Q Consensus 703 -------~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~-~~~~~~~~~~~~~LSgGqrqRv~ia~aL~~~p 774 (1202)
.+||.|++.|... . .. ..++.++++.+||.. ..+.. +..|||||||||+||++|+.+|
T Consensus 799 ~sI~dvl~ltv~e~l~~~~~------~-~~--~~~~~~~L~~~gL~~~~l~~~-----~~~LSGGekQRv~LAraL~~~p 864 (972)
T 2r6f_A 799 KNIAEVLDMTVEDALDFFAS------I-PK--IKRKLETLYDVGLGYMKLGQP-----ATTLSGGEAQRVKLAAELHRRS 864 (972)
T ss_dssp BCHHHHHTSBHHHHHHHTCS------C-HH--HHHHHHHHHHTTCSSSBTTCC-----GGGCCHHHHHHHHHHHHHSSCC
T ss_pred CCHHHhhhcCHHHHHHHHhc------c-hh--HHHHHHHHHHcCCCcccccCc-----hhhCCHHHHHHHHHHHHHhcCC
Confidence 3688888876321 1 11 123568899999976 44544 3579999999999999999875
Q ss_pred ---CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEe-----cCCEEEEEcCC
Q 000979 775 ---SIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK-----RGGQEIYVGPL 841 (1202)
Q Consensus 775 ---~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~-----~gG~~~~~G~~ 841 (1202)
+||||||||+|||+.++..+++.|++++++|.|||+++|+++ ..+.+|++++|. ++|++++.|++
T Consensus 865 ~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvisHdl~--~i~~aDrIivL~p~gG~~~G~Iv~~g~~ 937 (972)
T 2r6f_A 865 NGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLD--VIKTADYIIDLGPEGGDRGGQIVAVGTP 937 (972)
T ss_dssp CSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHH--HHTTCSEEEEECSSSTTSCCSEEEEESH
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHH--HHHhCCEEEEEcCCCCCCCCEEEEecCH
Confidence 999999999999999999999999999888999999999975 457899999994 36899999986
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-40 Score=354.80 Aligned_cols=202 Identities=20% Similarity=0.272 Sum_probs=171.4
Q ss_pred ceeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCcc
Q 000979 602 HSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP 681 (1202)
Q Consensus 602 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 681 (1202)
..++++|++++|. + ++|+|+||++++||+++|+||||||||||||+|+|..+ +.+|+|.++|.+
T Consensus 9 ~~l~~~~ls~~y~-------------~-~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~--p~~G~I~~~g~~ 72 (214)
T 1sgw_A 9 SKLEIRDLSVGYD-------------K-PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLK--PLKGEIIYNGVP 72 (214)
T ss_dssp CEEEEEEEEEESS-------------S-EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSC--CSEEEEEETTEE
T ss_pred ceEEEEEEEEEeC-------------C-eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCeEEEECCEE
Confidence 3588999998872 2 58999999999999999999999999999999999876 448999999987
Q ss_pred CCcccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHH
Q 000979 682 KKQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQR 761 (1202)
Q Consensus 682 ~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqr 761 (1202)
.. ..++.++||+|++.+++.+||+||+.++...+.. ... +++++++++.+++.+. ++. +..||||||
T Consensus 73 ~~--~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~-~~~----~~~~~~~l~~~gl~~~-~~~-----~~~LSgGqk 139 (214)
T 1sgw_A 73 IT--KVKGKIFFLPEEIIVPRKISVEDYLKAVASLYGV-KVN----KNEIMDALESVEVLDL-KKK-----LGELSQGTI 139 (214)
T ss_dssp GG--GGGGGEEEECSSCCCCTTSBHHHHHHHHHHHTTC-CCC----HHHHHHHHHHTTCCCT-TSB-----GGGSCHHHH
T ss_pred hh--hhcCcEEEEeCCCcCCCCCCHHHHHHHHHHhcCC-chH----HHHHHHHHHHcCCCcC-CCC-----hhhCCHHHH
Confidence 65 3567799999999999999999999987654321 111 3447889999999876 554 357999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCCEE
Q 000979 762 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQE 835 (1202)
Q Consensus 762 qRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~ 835 (1202)
||++|||||+.+|++|+|||||+|||+.++..+++.|++++++|+|||++||+++ .+...+|++++++ |++
T Consensus 140 qrv~laraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~-~~~~~~d~v~~~~--~~~ 210 (214)
T 1sgw_A 140 RRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREEL-SYCDVNENLHKYS--TKI 210 (214)
T ss_dssp HHHHHHHHTTSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESSCC-TTSSEEEEGGGGB--C--
T ss_pred HHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEeC--Ccc
Confidence 9999999999999999999999999999999999999999766899999999997 5677788888664 454
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-40 Score=360.08 Aligned_cols=205 Identities=21% Similarity=0.348 Sum_probs=176.4
Q ss_pred eEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCC
Q 000979 604 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 683 (1202)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 683 (1202)
++++|++++ ++|+|+||++++||+++|+||||||||||+|+|+|..+ +. |+|.++|.+..
T Consensus 5 l~~~~l~~~-----------------~vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~--p~-G~i~~~g~~~~ 64 (249)
T 2qi9_C 5 MQLQDVAES-----------------TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTS--GK-GSIQFAGQPLE 64 (249)
T ss_dssp EEEEEEEET-----------------TTEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSC--CE-EEEEETTEEGG
T ss_pred EEEEceEEE-----------------EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CC-eEEEECCEECC
Confidence 678888764 26999999999999999999999999999999999876 56 99999998764
Q ss_pred c---ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHH
Q 000979 684 Q---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQ 760 (1202)
Q Consensus 684 ~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGq 760 (1202)
. ..+++.++|++|++.+++.+||+||+.++.. . ... +++++++++.+++.+..++.. ..|||||
T Consensus 65 ~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~---~-~~~----~~~~~~~l~~~~l~~~~~~~~-----~~LSgGq 131 (249)
T 2qi9_C 65 AWSATKLALHRAYLSQQQTPPFATPVWHYLTLHQH---D-KTR----TELLNDVAGALALDDKLGRST-----NQLSGGE 131 (249)
T ss_dssp GSCHHHHHHHEEEECSCCCCCTTCBHHHHHHTTCS---S-TTC----HHHHHHHHHHTTCGGGTTSBG-----GGCCHHH
T ss_pred cCCHHHHhceEEEECCCCccCCCCcHHHHHHHhhc---c-CCc----HHHHHHHHHHcCChhHhcCCh-----hhCCHHH
Confidence 2 2345679999999999999999999987521 1 111 345789999999988777653 5799999
Q ss_pred HHHHHHHHHHhhCCC-------EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCC
Q 000979 761 RKRLTIAVELVANPS-------IIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGG 833 (1202)
Q Consensus 761 rqRv~ia~aL~~~p~-------illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG 833 (1202)
|||++|||||+.+|+ +|+|||||+|||+.++..+.+.|++++++|+|||++||+++ .+.+.+|++++|++ |
T Consensus 132 ~qrv~lAraL~~~p~~~~~~~~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~-~~~~~~d~v~~l~~-G 209 (249)
T 2qi9_C 132 WQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALSQQGLAIVMSSHDLN-HTLRHAHRAWLLKG-G 209 (249)
T ss_dssp HHHHHHHHHHHHHCTTTCTTCCEEEESSTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHH-HHHHHCSEEEEEET-T
T ss_pred HHHHHHHHHHHcCCCcCCCCCeEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEEC-C
Confidence 999999999999999 99999999999999999999999999777999999999986 46689999999985 8
Q ss_pred EEEEEcCCCc
Q 000979 834 QEIYVGPLGR 843 (1202)
Q Consensus 834 ~~~~~G~~~~ 843 (1202)
++++.|++++
T Consensus 210 ~i~~~g~~~~ 219 (249)
T 2qi9_C 210 KMLASGRREE 219 (249)
T ss_dssp EEEEEEEHHH
T ss_pred EEEEeCCHHH
Confidence 9999998643
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.1e-40 Score=359.37 Aligned_cols=212 Identities=27% Similarity=0.433 Sum_probs=174.5
Q ss_pred ceeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCcc
Q 000979 602 HSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP 681 (1202)
Q Consensus 602 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 681 (1202)
..++++||+++|+ .+++.+|+||||++++||+++|+||||||||||+|+|+|..+ +.+|+|.++|.+
T Consensus 6 ~~~~~~~l~~~y~-----------~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~I~i~g~~ 72 (247)
T 2ff7_A 6 HDITFRNIRFRYK-----------PDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYI--PENGQVLIDGHD 72 (247)
T ss_dssp EEEEEEEEEEESS-----------TTSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEE
T ss_pred CceeEEEEEEEeC-----------CCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCEE
Confidence 3588999999873 013468999999999999999999999999999999999876 448999999988
Q ss_pred CCc---ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCcccccc-------ccCC
Q 000979 682 KKQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSL-------VGLP 751 (1202)
Q Consensus 682 ~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~-------~~~~ 751 (1202)
+.. ..+++.++||+|++.+++ .||+||+.++. ..... +.++++++.+++.+..++. .+.
T Consensus 73 ~~~~~~~~~~~~i~~v~Q~~~l~~-~tv~enl~~~~-----~~~~~----~~~~~~l~~~~l~~~~~~~~~gl~~~~~~- 141 (247)
T 2ff7_A 73 LALADPNWLRRQVGVVLQDNVLLN-RSIIDNISLAN-----PGMSV----EKVIYAAKLAGAHDFISELREGYNTIVGE- 141 (247)
T ss_dssp TTTSCHHHHHHHEEEECSSCCCTT-SBHHHHHTTTC-----TTCCH----HHHHHHHHHHTCHHHHHTSTTGGGCBCST-
T ss_pred hhhCCHHHHHhcEEEEeCCCcccc-ccHHHHHhccC-----CCCCH----HHHHHHHHHhChHHHHHhCcchhhhhhhC-
Confidence 643 234567999999998886 69999998752 11121 2356777888876654432 222
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEec
Q 000979 752 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKR 831 (1202)
Q Consensus 752 ~~~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~ 831 (1202)
....|||||||||+|||||+.+|++|+|||||+|||+.++..+++.|+++. +|+|||++||+++ .+ +.||++++|.+
T Consensus 142 ~~~~LSgGq~qRv~iAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~-~g~tviivtH~~~-~~-~~~d~v~~l~~ 218 (247)
T 2ff7_A 142 QGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKIC-KGRTVIIIAHRLS-TV-KNADRIIVMEK 218 (247)
T ss_dssp TTTCCCHHHHHHHHHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHHH-TTSEEEEECSSGG-GG-TTSSEEEEEET
T ss_pred CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHc-CCCEEEEEeCCHH-HH-HhCCEEEEEEC
Confidence 245799999999999999999999999999999999999999999999984 6999999999986 33 56999999985
Q ss_pred CCEEEEEcCC
Q 000979 832 GGQEIYVGPL 841 (1202)
Q Consensus 832 gG~~~~~G~~ 841 (1202)
|++++.|++
T Consensus 219 -G~i~~~g~~ 227 (247)
T 2ff7_A 219 -GKIVEQGKH 227 (247)
T ss_dssp -TEEEEEECH
T ss_pred -CEEEEECCH
Confidence 899999986
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-40 Score=366.20 Aligned_cols=215 Identities=21% Similarity=0.283 Sum_probs=173.6
Q ss_pred eeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccC
Q 000979 603 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 682 (1202)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 682 (1202)
.++++||+++|... +++.+|+||||++++||+++|+||||||||||||+|+|... +.+|+|.++|.++
T Consensus 16 ~l~~~~l~~~y~~~----------~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~--p~~G~I~~~g~~i 83 (271)
T 2ixe_A 16 LVKFQDVSFAYPNH----------PNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQ--PTGGKVLLDGEPL 83 (271)
T ss_dssp CEEEEEEEECCTTC----------TTSCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEEG
T ss_pred eEEEEEEEEEeCCC----------CCceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCCEEEECCEEc
Confidence 58999999987410 12458999999999999999999999999999999999876 4489999999876
Q ss_pred Cc---ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCC-HH----HHHHHHHHHHHHc--CCCccccccccCCC
Q 000979 683 KQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVD-SE----TRKMFIDEVMELV--ELNPLRQSLVGLPG 752 (1202)
Q Consensus 683 ~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~-~~----~~~~~~~~~l~~l--~l~~~~~~~~~~~~ 752 (1202)
.. ..+++.++||+|++.+++ .||+||+.++... ... .+ ..+..++++++.+ |+.+..+..
T Consensus 84 ~~~~~~~~~~~i~~v~Q~~~l~~-~tv~enl~~~~~~----~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~----- 153 (271)
T 2ixe_A 84 VQYDHHYLHTQVAAVGQEPLLFG-RSFRENIAYGLTR----TPTMEEITAVAMESGAHDFISGFPQGYDTEVGET----- 153 (271)
T ss_dssp GGBCHHHHHHHEEEECSSCCCCS-SBHHHHHHTTCSS----CCCHHHHHHHHHHHTCHHHHHHSTTGGGSBCCGG-----
T ss_pred ccCCHHHHhccEEEEecCCcccc-ccHHHHHhhhccc----CChHHHHHHHHHHHhHHHHHHhhhcchhhhhcCC-----
Confidence 43 234567999999998887 5999999875321 111 11 1122345667777 666555554
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCCHHHHHhcceEEEEec
Q 000979 753 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKR 831 (1202)
Q Consensus 753 ~~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~v~~l~~ 831 (1202)
+..|||||||||+|||||+.+|+||||||||+|||+.++..+++.|+++++ +|+|||++||+++ ..+.||++++|.+
T Consensus 154 ~~~LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~tviivtHd~~--~~~~~d~v~~l~~ 231 (271)
T 2ixe_A 154 GNQLSGGQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLS--LAERAHHILFLKE 231 (271)
T ss_dssp GTTSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEEECSCHH--HHTTCSEEEEEET
T ss_pred cCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHH--HHHhCCEEEEEEC
Confidence 357999999999999999999999999999999999999999999999864 4899999999975 3456999999985
Q ss_pred CCEEEEEcCCC
Q 000979 832 GGQEIYVGPLG 842 (1202)
Q Consensus 832 gG~~~~~G~~~ 842 (1202)
|+++..|+++
T Consensus 232 -G~i~~~g~~~ 241 (271)
T 2ixe_A 232 -GSVCEQGTHL 241 (271)
T ss_dssp -TEEEEEECHH
T ss_pred -CEEEEECCHH
Confidence 8999999863
|
| >2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-39 Score=403.05 Aligned_cols=195 Identities=26% Similarity=0.362 Sum_probs=144.3
Q ss_pred EeecceEEEeCCeEEEEEcCCCCCHHHHHHH-HhCCC-------CC----------------ceEEE-------EEEEcC
Q 000979 631 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDV-LAGRK-------TG----------------GYITG-------NITISG 679 (1202)
Q Consensus 631 iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~-l~g~~-------~~----------------~~~~G-------~i~~~g 679 (1202)
.|+|||++|++||+++|+|+||||||||++. |+|.. .+ .+..| .|.++|
T Consensus 512 ~L~~vsl~i~~Geiv~I~G~nGSGKSTLl~~~L~g~l~~~~g~~~~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~i~vdq 591 (842)
T 2vf7_A 512 NLDNLDVRFPLGVMTSVTGVSGSGKSTLVSQALVDALAAHFGQPVNPDPEDDEDPADHTAGSARLGGDLAQITRLVRVDQ 591 (842)
T ss_dssp TEEEEEEEEESSSEEEEECCTTSSHHHHCCCCCHHHHHHHTTC-----------------CCCEEEESGGGCCEEEEECS
T ss_pred ccccceEEEcCCCEEEEEcCCCcCHHHHHHHHHHHHHHHHhcCCCCccccccccccccccccccccCcccccceEEEECC
Confidence 3999999999999999999999999999996 66421 11 13467 688998
Q ss_pred ccCCcccc-------------c---------ceEEEeec----------------------CCCCCC-------------
Q 000979 680 YPKKQETF-------------A---------RISGYCEQ----------------------NDIHSP------------- 702 (1202)
Q Consensus 680 ~~~~~~~~-------------~---------~~~~~v~q----------------------~~~~~~------------- 702 (1202)
.++..... + +..||.++ +..+++
T Consensus 592 ~~i~~~~rs~~at~~~~~~~ir~~fa~~~~~r~~g~~~~~fs~n~~~g~c~~c~g~G~~~~~~~f~~~v~~~c~~c~G~r 671 (842)
T 2vf7_A 592 KPIGRTPRSNMATYTGLFDQVRKLFAATPLAKKRGYNAGRFSFNVKGGRCEHCQGEGWVMVELLFLPSVYAPCPVCHGTR 671 (842)
T ss_dssp SCSCSSTTCCHHHHSSTHHHHHHHHHTSHHHHHTTCCGGGGCSSSTTTBCTTTTTCSEEEETTCSSSCEEEECTTTTTCC
T ss_pred eeCCCCccccchhhhhHHHHHHHHHhcChHHHhcCCccccccccccccccccccCCCccchhhhcCCccceecccccCcc
Confidence 76532110 0 01122211 111111
Q ss_pred -------------------CCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCcc-ccccccCCCCCCCCHHHHH
Q 000979 703 -------------------FVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPL-RQSLVGLPGVSGLSTEQRK 762 (1202)
Q Consensus 703 -------------------~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~-~~~~~~~~~~~~LSgGqrq 762 (1202)
.+|+.|++.|.. . .. ..+++.++++.++|... .+.. +..|||||||
T Consensus 672 ~~~e~l~v~~~~~si~e~l~ltv~e~l~~~~------~-~~--~~~~~~~~L~~~gL~~~~l~~~-----~~~LSGGekQ 737 (842)
T 2vf7_A 672 YNAETLEVEYRGKNIADVLALTVDEAHDFFA------D-ES--AIFRALDTLREVGLGYLRLGQP-----ATELSGGEAQ 737 (842)
T ss_dssp BCTTGGGCCBTTBCHHHHHTCBHHHHHHHTT------T-SH--HHHHHHHHHHHTTCTTSBTTCC-----GGGCCHHHHH
T ss_pred cchhhHhhhhcCCCHHHHHhccHHHHHHHhh------c-ch--HHHHHHHHHHHcCCCcccccCC-----cccCCHHHHH
Confidence 245556554421 1 11 12357899999999763 3443 3579999999
Q ss_pred HHHHHHHHhhC---CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEe-----cCCE
Q 000979 763 RLTIAVELVAN---PSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK-----RGGQ 834 (1202)
Q Consensus 763 Rv~ia~aL~~~---p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~-----~gG~ 834 (1202)
||+||++|+.+ |+||+|||||+|||+.+...+++.|++++++|.|||+++|+++ .+ +.||++++|. ++|+
T Consensus 738 Rv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~tVIvisHdl~-~i-~~aDrii~L~p~~g~~~G~ 815 (842)
T 2vf7_A 738 RIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDAGNTVIAVEHKMQ-VV-AASDWVLDIGPGAGEDGGR 815 (842)
T ss_dssp HHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHH-HH-TTCSEEEEECSSSGGGCCS
T ss_pred HHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHH-HH-HhCCEEEEECCCCCCCCCE
Confidence 99999999996 6999999999999999999999999999888999999999975 34 8899999994 4689
Q ss_pred EEEEcCC
Q 000979 835 EIYVGPL 841 (1202)
Q Consensus 835 ~~~~G~~ 841 (1202)
+++.|++
T Consensus 816 Iv~~g~~ 822 (842)
T 2vf7_A 816 LVAQGTP 822 (842)
T ss_dssp EEEEECH
T ss_pred EEEEcCH
Confidence 9999986
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=9.7e-40 Score=357.71 Aligned_cols=211 Identities=27% Similarity=0.402 Sum_probs=174.1
Q ss_pred eEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCC
Q 000979 604 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 683 (1202)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 683 (1202)
++++|++++|+ +++.+|+||||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.
T Consensus 2 l~~~~l~~~y~------------~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~ 67 (243)
T 1mv5_A 2 LSARHVDFAYD------------DSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQ--PTAGEITIDGQPID 67 (243)
T ss_dssp EEEEEEEECSS------------SSSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSC--CSBSCEEETTEEST
T ss_pred EEEEEEEEEeC------------CCCceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCEEhh
Confidence 57889998772 12358999999999999999999999999999999999876 34899999998764
Q ss_pred c---ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccc-------cCCCC
Q 000979 684 Q---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLV-------GLPGV 753 (1202)
Q Consensus 684 ~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~-------~~~~~ 753 (1202)
. ..+++.++||+|++.+++ .||+||+.++.. ..... +.++++++.+++.+..+... +. .+
T Consensus 68 ~~~~~~~~~~i~~v~q~~~l~~-~tv~enl~~~~~----~~~~~----~~~~~~l~~~~l~~~~~~~~~gl~~~~~~-~~ 137 (243)
T 1mv5_A 68 NISLENWRSQIGFVSQDSAIMA-GTIRENLTYGLE----GDYTD----EDLWQVLDLAFARSFVENMPDQLNTEVGE-RG 137 (243)
T ss_dssp TTSCSCCTTTCCEECCSSCCCC-EEHHHHTTSCTT----SCSCH----HHHHHHHHHHTCTTTTTSSTTGGGCEEST-TS
T ss_pred hCCHHHHHhhEEEEcCCCcccc-ccHHHHHhhhcc----CCCCH----HHHHHHHHHhChHHHHHhCccchhchhcc-Cc
Confidence 3 235667999999998887 599999987421 11221 23678888889887665432 22 24
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCC
Q 000979 754 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGG 833 (1202)
Q Consensus 754 ~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG 833 (1202)
..|||||||||+|||||+.+|++|+|||||+|||+.++..+++.|++++ +|+|||++||+++ ..+.||++++|++ |
T Consensus 138 ~~LSgGq~qrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~vtH~~~--~~~~~d~v~~l~~-G 213 (243)
T 1mv5_A 138 VKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLM-KGRTTLVIAHRLS--TIVDADKIYFIEK-G 213 (243)
T ss_dssp BCCCHHHHHHHHHHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHHHHH-TTSEEEEECCSHH--HHHHCSEEEEEET-T
T ss_pred CcCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHhc-CCCEEEEEeCChH--HHHhCCEEEEEEC-C
Confidence 5799999999999999999999999999999999999999999999987 6999999999975 3456999999985 8
Q ss_pred EEEEEcCCC
Q 000979 834 QEIYVGPLG 842 (1202)
Q Consensus 834 ~~~~~G~~~ 842 (1202)
+++..|+++
T Consensus 214 ~i~~~g~~~ 222 (243)
T 1mv5_A 214 QITGSGKHN 222 (243)
T ss_dssp EECCCSCHH
T ss_pred EEEEeCCHH
Confidence 999888864
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.5e-39 Score=353.18 Aligned_cols=206 Identities=17% Similarity=0.201 Sum_probs=173.2
Q ss_pred eEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCC
Q 000979 604 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 683 (1202)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 683 (1202)
++++|++++|... ...+.+|+|+||+++ ||+++|+||||||||||+|+|+|.. +. +|+|.++|.+..
T Consensus 2 l~~~~l~~~y~~~---------~~~~~il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~--~G~I~~~g~~~~ 68 (263)
T 2pjz_A 2 IQLKNVGITLSGK---------GYERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-PY--SGNIFINGMEVR 68 (263)
T ss_dssp EEEEEEEEEEEEE---------TTEEEEEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS-CC--EEEEEETTEEGG
T ss_pred EEEEEEEEEeCCC---------CccceeEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC-CC--CcEEEECCEECc
Confidence 6789999988410 012568999999999 9999999999999999999999987 53 899999998764
Q ss_pred cccccceEE-EeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCCCCCCCCHHHH
Q 000979 684 QETFARISG-YCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELN-PLRQSLVGLPGVSGLSTEQR 761 (1202)
Q Consensus 684 ~~~~~~~~~-~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-~~~~~~~~~~~~~~LSgGqr 761 (1202)
....++.++ |++|++.+ .+||+||+.+...+. ... +++++++++.+++. +..++.. .+||||||
T Consensus 69 ~~~~~~~i~~~v~Q~~~l--~~tv~enl~~~~~~~---~~~----~~~~~~~l~~~gl~~~~~~~~~-----~~LSgGqk 134 (263)
T 2pjz_A 69 KIRNYIRYSTNLPEAYEI--GVTVNDIVYLYEELK---GLD----RDLFLEMLKALKLGEEILRRKL-----YKLSAGQS 134 (263)
T ss_dssp GCSCCTTEEECCGGGSCT--TSBHHHHHHHHHHHT---CCC----HHHHHHHHHHTTCCGGGGGSBG-----GGSCHHHH
T ss_pred chHHhhheEEEeCCCCcc--CCcHHHHHHHhhhhc---chH----HHHHHHHHHHcCCChhHhcCCh-----hhCCHHHH
Confidence 311256789 99999877 899999999876432 111 23478899999998 7777653 57999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcc-eEEEEecCCEEEEEcC
Q 000979 762 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFD-ELFLMKRGGQEIYVGP 840 (1202)
Q Consensus 762 qRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d-~v~~l~~gG~~~~~G~ 840 (1202)
||++|||||+.+|++|+|||||+|||+.++..+.+.|+++++ |||++||+++ .+.+.|| ++++|++ |++++.|+
T Consensus 135 qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~L~~~~~---tviivtHd~~-~~~~~~d~~i~~l~~-G~i~~~g~ 209 (263)
T 2pjz_A 135 VLVRTSLALASQPEIVGLDEPFENVDAARRHVISRYIKEYGK---EGILVTHELD-MLNLYKEYKAYFLVG-NRLQGPIS 209 (263)
T ss_dssp HHHHHHHHHHTCCSEEEEECTTTTCCHHHHHHHHHHHHHSCS---EEEEEESCGG-GGGGCTTSEEEEEET-TEEEEEEE
T ss_pred HHHHHHHHHHhCCCEEEEECCccccCHHHHHHHHHHHHHhcC---cEEEEEcCHH-HHHHhcCceEEEEEC-CEEEEecC
Confidence 999999999999999999999999999999999999998743 9999999986 4678899 9999985 89999998
Q ss_pred C
Q 000979 841 L 841 (1202)
Q Consensus 841 ~ 841 (1202)
+
T Consensus 210 ~ 210 (263)
T 2pjz_A 210 V 210 (263)
T ss_dssp H
T ss_pred H
Confidence 6
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-38 Score=351.14 Aligned_cols=212 Identities=24% Similarity=0.367 Sum_probs=171.2
Q ss_pred eeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccC
Q 000979 603 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 682 (1202)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 682 (1202)
.++++||+++|... ..+.+|+||||++++||+++|+||||||||||+|+|+|..+ + +|+|.++|.++
T Consensus 17 ~l~i~~l~~~y~~~----------~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~-~G~I~i~g~~i 83 (260)
T 2ghi_A 17 NIEFSDVNFSYPKQ----------TNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYD--A-EGDIKIGGKNV 83 (260)
T ss_dssp CEEEEEEEECCTTC----------CSSCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC--C-EEEEEETTEEG
T ss_pred eEEEEEEEEEeCCC----------CcCceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCC--C-CeEEEECCEEh
Confidence 48899999987411 11358999999999999999999999999999999999875 4 79999999876
Q ss_pred Cc---ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCcc-------ccccccCCC
Q 000979 683 KQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPL-------RQSLVGLPG 752 (1202)
Q Consensus 683 ~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~-------~~~~~~~~~ 752 (1202)
.. ..+++.++||+|++.+++ .||+||+.++.. .... +.+.++++.+++.+. .++.++..
T Consensus 84 ~~~~~~~~~~~i~~v~Q~~~l~~-~tv~enl~~~~~-----~~~~----~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~- 152 (260)
T 2ghi_A 84 NKYNRNSIRSIIGIVPQDTILFN-ETIKYNILYGKL-----DATD----EEVIKATKSAQLYDFIEALPKKWDTIVGNK- 152 (260)
T ss_dssp GGBCHHHHHTTEEEECSSCCCCS-EEHHHHHHTTCT-----TCCH----HHHHHHHHHTTCHHHHHTSTTGGGCEESSS-
T ss_pred hhcCHHHHhccEEEEcCCCcccc-cCHHHHHhccCC-----CCCH----HHHHHHHHHhCCHHHHHhccccccccccCC-
Confidence 43 234567999999998886 599999987421 1121 234566676666443 23333322
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecC
Q 000979 753 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 832 (1202)
Q Consensus 753 ~~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~g 832 (1202)
+..|||||||||+|||||+.+|+||+|||||+|||+.++..+++.|+++.+ |+|||++||+++. + +.||++++|++
T Consensus 153 ~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~l~~-~~tviivtH~~~~-~-~~~d~i~~l~~- 228 (260)
T 2ghi_A 153 GMKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDLRK-NRTLIIIAHRLST-I-SSAESIILLNK- 228 (260)
T ss_dssp SBCCCHHHHHHHHHHHHHHHCCSEEEEECCCCTTCHHHHHHHHHHHHHHTT-TSEEEEECSSGGG-S-TTCSEEEEEET-
T ss_pred cCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHhcC-CCEEEEEcCCHHH-H-HhCCEEEEEEC-
Confidence 457999999999999999999999999999999999999999999999854 8999999999863 3 56999999985
Q ss_pred CEEEEEcCCC
Q 000979 833 GQEIYVGPLG 842 (1202)
Q Consensus 833 G~~~~~G~~~ 842 (1202)
|+++..|+++
T Consensus 229 G~i~~~g~~~ 238 (260)
T 2ghi_A 229 GKIVEKGTHK 238 (260)
T ss_dssp TEEEEEECHH
T ss_pred CEEEEECCHH
Confidence 8999999863
|
| >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.1e-39 Score=370.25 Aligned_cols=214 Identities=20% Similarity=0.271 Sum_probs=177.7
Q ss_pred CceeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCc
Q 000979 601 PHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGY 680 (1202)
Q Consensus 601 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~ 680 (1202)
...++++||+++|+. +++.+|+||||+|++||+++|+||||||||||||+|+|... .+|+|.++|.
T Consensus 17 ~~~i~~~~l~~~y~~-----------~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~---~~G~I~i~G~ 82 (390)
T 3gd7_A 17 GGQMTVKDLTAKYTE-----------GGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN---TEGEIQIDGV 82 (390)
T ss_dssp SCCEEEEEEEEESSS-----------SSCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSE---EEEEEEESSC
T ss_pred CCeEEEEEEEEEecC-----------CCeEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCC---CCeEEEECCE
Confidence 346999999998841 23568999999999999999999999999999999999864 4799999999
Q ss_pred cCCc---ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccC------C
Q 000979 681 PKKQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGL------P 751 (1202)
Q Consensus 681 ~~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~------~ 751 (1202)
++.. ..+++.++||+|++.+++ +||+||+.+.. ... +++++++++.++|.+..++.... .
T Consensus 83 ~i~~~~~~~~rr~ig~v~Q~~~lf~-~tv~enl~~~~------~~~----~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~ 151 (390)
T 3gd7_A 83 SWDSITLEQWRKAFGVIPQKVFIFS-GTFRKNLDPNA------AHS----DQEIWKVADEVGLRSVIEQFPGKLDFVLVD 151 (390)
T ss_dssp BTTSSCHHHHHHTEEEESCCCCCCS-EEHHHHHCTTC------CSC----HHHHHHHHHHTTCHHHHTTSTTGGGCEECT
T ss_pred ECCcCChHHHhCCEEEEcCCcccCc-cCHHHHhhhcc------ccC----HHHHHHHHHHhCCHHHHhhccccccccccc
Confidence 8754 234678999999999987 69999996321 112 23477899999998777665321 1
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEec
Q 000979 752 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKR 831 (1202)
Q Consensus 752 ~~~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~ 831 (1202)
....|||||||||+|||||+.+|++|||||||||||+..+..+++.|+++. .++|+|++||+++ ....+||+++|++
T Consensus 152 ~g~~LSGGqrQRvalARAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~~~-~~~tvi~vtHd~e--~~~~aDri~vl~~ 228 (390)
T 3gd7_A 152 GGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAF-ADCTVILCEARIE--AMLECDQFLVIEE 228 (390)
T ss_dssp TTTTSCHHHHHHHHHHHHHHTTCCEEEEESHHHHSCHHHHHHHHHHHHTTT-TTSCEEEECSSSG--GGTTCSEEEEEET
T ss_pred ccccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh-CCCEEEEEEcCHH--HHHhCCEEEEEEC
Confidence 123499999999999999999999999999999999999999999998864 5899999999974 4567999999985
Q ss_pred CCEEEEEcCCCc
Q 000979 832 GGQEIYVGPLGR 843 (1202)
Q Consensus 832 gG~~~~~G~~~~ 843 (1202)
|+++..|++.+
T Consensus 229 -G~i~~~g~~~e 239 (390)
T 3gd7_A 229 -NKVRQYDSILE 239 (390)
T ss_dssp -TEEEEESSHHH
T ss_pred -CEEEEECCHHH
Confidence 89999999753
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-37 Score=383.77 Aligned_cols=215 Identities=23% Similarity=0.307 Sum_probs=178.2
Q ss_pred CceeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCc
Q 000979 601 PHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGY 680 (1202)
Q Consensus 601 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~ 680 (1202)
...++++||+++|+. +++++|+|+|+++++||++||+||||||||||+|+|+|..+ +.+|+|.+||.
T Consensus 339 ~~~i~~~~v~~~y~~-----------~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~--p~~G~i~~~g~ 405 (582)
T 3b5x_A 339 NGEVDVKDVTFTYQG-----------KEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYD--VDSGSICLDGH 405 (582)
T ss_pred CCeEEEEEEEEEcCC-----------CCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCCEEEECCE
Confidence 356999999999852 12458999999999999999999999999999999999876 45899999998
Q ss_pred cCCc---ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCcc-------ccccccC
Q 000979 681 PKKQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPL-------RQSLVGL 750 (1202)
Q Consensus 681 ~~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~-------~~~~~~~ 750 (1202)
++.. ..+++.++||+|++.+++ .||+||+.++.. +..+. ++++++++.+++.+. .|+.+|.
T Consensus 406 ~~~~~~~~~~~~~i~~v~Q~~~l~~-~tv~eni~~~~~----~~~~~----~~~~~~~~~~~l~~~~~~~p~g~~t~~~~ 476 (582)
T 3b5x_A 406 DVRDYKLTNLRRHFALVSQNVHLFN-DTIANNIAYAAE----GEYTR----EQIEQAARQAHAMEFIENMPQGLDTVIGE 476 (582)
T ss_pred EhhhCCHHHHhcCeEEEcCCCcccc-ccHHHHHhccCC----CCCCH----HHHHHHHHHCCCHHHHHhCcccccchhcC
Confidence 8643 345678999999999887 599999988531 12222 236777777777643 3444554
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEe
Q 000979 751 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 830 (1202)
Q Consensus 751 ~~~~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~ 830 (1202)
. ...||||||||++|||||+++|++|+|||||||||+.+++.+.+.|+++. +|+|+|++||+++ ..+.||++++|+
T Consensus 477 ~-~~~LSgGq~qr~~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~--~~~~~d~i~~l~ 552 (582)
T 3b5x_A 477 N-GTSLSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQ-KNKTVLVIAHRLS--TIEQADEILVVD 552 (582)
T ss_pred C-CCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHH--HHHhCCEEEEEE
Confidence 4 35799999999999999999999999999999999999999999999985 4999999999985 346799999998
Q ss_pred cCCEEEEEcCCC
Q 000979 831 RGGQEIYVGPLG 842 (1202)
Q Consensus 831 ~gG~~~~~G~~~ 842 (1202)
+ |+++..|+++
T Consensus 553 ~-G~i~~~g~~~ 563 (582)
T 3b5x_A 553 E-GEIIERGRHA 563 (582)
T ss_pred C-CEEEEECCHH
Confidence 5 8999999864
|
| >3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-38 Score=392.39 Aligned_cols=213 Identities=25% Similarity=0.404 Sum_probs=173.8
Q ss_pred CceeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCc
Q 000979 601 PHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGY 680 (1202)
Q Consensus 601 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~ 680 (1202)
...++++||+|+|+ +++++|+|+|+++++||++||+||||||||||+++|+|..+ +.+|+|.+||.
T Consensus 352 ~~~i~~~~v~~~y~------------~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~--p~~G~i~~~g~ 417 (598)
T 3qf4_B 352 RGEIEFKNVWFSYD------------KKKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYD--VDRGQILVDGI 417 (598)
T ss_dssp CCCEEEEEEECCSS------------SSSCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSC--CSEEEEEETTE
T ss_pred CCeEEEEEEEEECC------------CCCccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcC--CCCeEEEECCE
Confidence 45799999999884 12358999999999999999999999999999999999877 45899999998
Q ss_pred cCCc---ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCc-------cccccccC
Q 000979 681 PKKQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP-------LRQSLVGL 750 (1202)
Q Consensus 681 ~~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~-------~~~~~~~~ 750 (1202)
++.. ..+++.++||+|++.+++ .||+||+.++. +..+++ .++++++..++.+ ..++.+|.
T Consensus 418 ~i~~~~~~~~r~~i~~v~Q~~~lf~-~tv~eni~~~~-----~~~~~~----~~~~~~~~~~~~~~~~~~~~g~~t~~~~ 487 (598)
T 3qf4_B 418 DIRKIKRSSLRSSIGIVLQDTILFS-TTVKENLKYGN-----PGATDE----EIKEAAKLTHSDHFIKHLPEGYETVLTD 487 (598)
T ss_dssp EGGGSCHHHHHHHEEEECTTCCCCS-SBHHHHHHSSS-----TTCCTT----HHHHHTTTTTCHHHHHTSTTGGGCBCHH
T ss_pred EhhhCCHHHHHhceEEEeCCCcccc-ccHHHHHhcCC-----CCCCHH----HHHHHHHHhCCHHHHHhccccccchhcC
Confidence 8654 345778999999998886 59999998752 112222 1344554444433 23444443
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEe
Q 000979 751 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 830 (1202)
Q Consensus 751 ~~~~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~ 830 (1202)
.+ ..||||||||++|||||+++|++|+||||||+||+.++..+.+.|+++. +|+|+|++||+++. + +.||++++|+
T Consensus 488 ~g-~~LSgGq~Qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~-~-~~~d~i~~l~ 563 (598)
T 3qf4_B 488 NG-EDLSQGQRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKLM-EGKTSIIIAHRLNT-I-KNADLIIVLR 563 (598)
T ss_dssp HH-TTSCHHHHHHHHHHHHHHTCCSEEEECCCCTTCCHHHHHHHHHHHHHHH-TTSEEEEESCCTTH-H-HHCSEEEEEC
T ss_pred CC-CCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHc-CCCEEEEEecCHHH-H-HcCCEEEEEE
Confidence 32 4699999999999999999999999999999999999999999999985 59999999999973 4 5699999998
Q ss_pred cCCEEEEEcCCC
Q 000979 831 RGGQEIYVGPLG 842 (1202)
Q Consensus 831 ~gG~~~~~G~~~ 842 (1202)
+ |+++..|+++
T Consensus 564 ~-G~i~~~g~~~ 574 (598)
T 3qf4_B 564 D-GEIVEMGKHD 574 (598)
T ss_dssp S-SSEEECSCHH
T ss_pred C-CEEEEECCHH
Confidence 5 8999999874
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-37 Score=338.98 Aligned_cols=200 Identities=23% Similarity=0.380 Sum_probs=158.5
Q ss_pred eEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCC
Q 000979 604 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 683 (1202)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 683 (1202)
++++|++++|.. +++.+|+|+||++++||+++|+||||||||||+|+|+|..+ +.+|+|.++|
T Consensus 4 l~~~~l~~~y~~-----------~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~I~~~g---- 66 (237)
T 2cbz_A 4 ITVRNATFTWAR-----------SDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMD--KVEGHVAIKG---- 66 (237)
T ss_dssp EEEEEEEEESCT-----------TSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSE--EEEEEEEECS----
T ss_pred EEEEEEEEEeCC-----------CCCceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECC----
Confidence 789999998741 12458999999999999999999999999999999999876 6799999998
Q ss_pred cccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCC------cc-ccccccCCCCCCC
Q 000979 684 QETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELN------PL-RQSLVGLPGVSGL 756 (1202)
Q Consensus 684 ~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~------~~-~~~~~~~~~~~~L 756 (1202)
.++||+|++.+ +.+||+||+.++... ..+ + .+++++.+++. +. .++..+. .+..|
T Consensus 67 ------~i~~v~Q~~~~-~~~tv~enl~~~~~~------~~~-~---~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~L 128 (237)
T 2cbz_A 67 ------SVAYVPQQAWI-QNDSLRENILFGCQL------EEP-Y---YRSVIQACALLPDLEILPSGDRTEIGE-KGVNL 128 (237)
T ss_dssp ------CEEEECSSCCC-CSEEHHHHHHTTSCC------CTT-H---HHHHHHHTTCHHHHTTSTTGGGSEEST-TSBCC
T ss_pred ------EEEEEcCCCcC-CCcCHHHHhhCcccc------CHH-H---HHHHHHHHhhHHHHHhccccccccccC-CCCCC
Confidence 28999999864 578999999875321 111 1 12333333332 11 1112222 24679
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHH---HHHhCCCEEEEEecCCCHHHHHhcceEEEEecCC
Q 000979 757 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR---NTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGG 833 (1202)
Q Consensus 757 SgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~---~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG 833 (1202)
||||||||+|||||+.+|++|+|||||+|||+.++..+++.|+ ++. +|+|||++||+++. + +.||++++|++ |
T Consensus 129 SgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~-~~~tviivtH~~~~-~-~~~d~v~~l~~-G 204 (237)
T 2cbz_A 129 SGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGML-KNKTRILVTHSMSY-L-PQVDVIIVMSG-G 204 (237)
T ss_dssp CHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHTTSTTSTT-TTSEEEEECSCSTT-G-GGSSEEEEEET-T
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHHhhc-CCCEEEEEecChHH-H-HhCCEEEEEeC-C
Confidence 9999999999999999999999999999999999999999995 343 58999999999873 3 57999999985 8
Q ss_pred EEEEEcCCC
Q 000979 834 QEIYVGPLG 842 (1202)
Q Consensus 834 ~~~~~G~~~ 842 (1202)
+++..|+++
T Consensus 205 ~i~~~g~~~ 213 (237)
T 2cbz_A 205 KISEMGSYQ 213 (237)
T ss_dssp EEEEEECHH
T ss_pred EEEEeCCHH
Confidence 999999864
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-37 Score=338.22 Aligned_cols=201 Identities=21% Similarity=0.324 Sum_probs=160.3
Q ss_pred eeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccC
Q 000979 603 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 682 (1202)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 682 (1202)
.++++|++++|+. +++++|+||||++++||+++|+||||||||||+|+|+|..+ +.+|+|.++|
T Consensus 6 ~l~~~~l~~~y~~-----------~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g--- 69 (229)
T 2pze_A 6 EVVMENVTAFWEE-----------GGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELE--PSEGKIKHSG--- 69 (229)
T ss_dssp EEEEEEEEECSST-----------TSCCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSC--CSEEEEEECS---
T ss_pred eEEEEEEEEEeCC-----------CCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCc--CCccEEEECC---
Confidence 5889999988731 23468999999999999999999999999999999999876 4589999998
Q ss_pred CcccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccc-------cccccCCCCCC
Q 000979 683 KQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLR-------QSLVGLPGVSG 755 (1202)
Q Consensus 683 ~~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~-------~~~~~~~~~~~ 755 (1202)
.++|++|++.+++. ||+||+.++.. .... ..++.++.+++.+.. ++.++.+ ...
T Consensus 70 -------~i~~v~q~~~~~~~-tv~enl~~~~~------~~~~----~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~ 130 (229)
T 2pze_A 70 -------RISFCSQFSWIMPG-TIKENIIFGVS------YDEY----RYRSVIKACQLEEDISKFAEKDNIVLGEG-GIT 130 (229)
T ss_dssp -------CEEEECSSCCCCSB-CHHHHHHTTSC------CCHH----HHHHHHHHTTCHHHHTTSTTGGGSCBCTT-CTT
T ss_pred -------EEEEEecCCcccCC-CHHHHhhccCC------cChH----HHHHHHHHhCcHHHHHhCcccccccccCC-CCc
Confidence 37999999988885 99999987421 1111 123444444443322 2222222 457
Q ss_pred CCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHH-HHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCCE
Q 000979 756 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT-VRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQ 834 (1202)
Q Consensus 756 LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~-l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~ 834 (1202)
||||||||++|||||+.+|++|+|||||+|||+.++..+++. ++++. +|+|||++||+++ ..+.||++++|++ |+
T Consensus 131 LSgGqkqrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~-~~~tvi~vtH~~~--~~~~~d~v~~l~~-G~ 206 (229)
T 2pze_A 131 LSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLM-ANKTRILVTSKME--HLKKADKILILHE-GS 206 (229)
T ss_dssp SCHHHHHHHHHHHHHHSCCSEEEEESTTTTSCHHHHHHHHHHCCCCCT-TTSEEEEECCCHH--HHHHCSEEEEEET-TE
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEECcccCCCHHHHHHHHHHHHHHhh-CCCEEEEEcCChH--HHHhCCEEEEEEC-CE
Confidence 999999999999999999999999999999999999999997 45554 4899999999975 3456999999985 89
Q ss_pred EEEEcCCC
Q 000979 835 EIYVGPLG 842 (1202)
Q Consensus 835 ~~~~G~~~ 842 (1202)
++..|+++
T Consensus 207 i~~~g~~~ 214 (229)
T 2pze_A 207 SYFYGTFS 214 (229)
T ss_dssp EEEEECHH
T ss_pred EEEECCHH
Confidence 99999863
|
| >3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.5e-38 Score=385.90 Aligned_cols=216 Identities=21% Similarity=0.317 Sum_probs=176.6
Q ss_pred CCceeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcC
Q 000979 600 EPHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISG 679 (1202)
Q Consensus 600 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g 679 (1202)
.+..++++||+|+|+. +++++|+|+|+++++||++||+||||||||||+++|+|..+ +.+|+|.+||
T Consensus 338 ~~~~i~~~~v~~~y~~-----------~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~--~~~G~i~i~g 404 (587)
T 3qf4_A 338 VEGSVSFENVEFRYFE-----------NTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLID--PERGRVEVDE 404 (587)
T ss_dssp CCCCEEEEEEEECSSS-----------SSCCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSC--CSEEEEEESS
T ss_pred CCCcEEEEEEEEEcCC-----------CCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcc--CCCcEEEECC
Confidence 3457999999999852 23458999999999999999999999999999999999877 4589999999
Q ss_pred ccCCc---ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCC-------cccccccc
Q 000979 680 YPKKQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELN-------PLRQSLVG 749 (1202)
Q Consensus 680 ~~~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-------~~~~~~~~ 749 (1202)
.++.. ..+++.++||+|++.+++. ||+||+.++. +..+.++ +.+.++..++. +-.|+.++
T Consensus 405 ~~i~~~~~~~~r~~i~~v~Q~~~lf~~-tv~eni~~~~-----~~~~~~~----~~~~~~~~~~~~~i~~l~~g~~~~~~ 474 (587)
T 3qf4_A 405 LDVRTVKLKDLRGHISAVPQETVLFSG-TIKENLKWGR-----EDATDDE----IVEAAKIAQIHDFIISLPEGYDSRVE 474 (587)
T ss_dssp SBGGGBCHHHHHHHEEEECSSCCCCSE-EHHHHHTTTC-----SSCCHHH----HHHHHHHTTCHHHHHTSSSGGGCEEC
T ss_pred EEcccCCHHHHHhheEEECCCCcCcCc-cHHHHHhccC-----CCCCHHH----HHHHHHHhCcHHHHHhcccchhhHhc
Confidence 98754 3457789999999998864 9999998752 1222222 23344444432 34456666
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEE
Q 000979 750 LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLM 829 (1202)
Q Consensus 750 ~~~~~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l 829 (1202)
..+ .+||||||||++|||||+++|+||+||||||+||+.+++.+++.|+++. +|+|+|++||+++ ....+||+++|
T Consensus 475 ~~~-~~LSgGqrQrv~lARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~--~~~~~d~i~vl 550 (587)
T 3qf4_A 475 RGG-RNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYT-KGCTTFIITQKIP--TALLADKILVL 550 (587)
T ss_dssp SSS-CSSCHHHHHHHHHHHHHHTCCSEEEEESCCTTSCHHHHHHHHHHHHHHS-TTCEEEEEESCHH--HHTTSSEEEEE
T ss_pred CCC-CCcCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHhC-CCCEEEEEecChH--HHHhCCEEEEE
Confidence 543 5799999999999999999999999999999999999999999999874 5899999999975 45689999999
Q ss_pred ecCCEEEEEcCCCc
Q 000979 830 KRGGQEIYVGPLGR 843 (1202)
Q Consensus 830 ~~gG~~~~~G~~~~ 843 (1202)
++ |+++..|++++
T Consensus 551 ~~-G~i~~~g~~~e 563 (587)
T 3qf4_A 551 HE-GKVAGFGTHKE 563 (587)
T ss_dssp ET-TEEEEEECHHH
T ss_pred EC-CEEEEECCHHH
Confidence 85 89999999753
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A | Back alignment and structure |
|---|
Probab=100.00 E-value=8.5e-38 Score=385.50 Aligned_cols=215 Identities=25% Similarity=0.389 Sum_probs=177.0
Q ss_pred CCceeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcC
Q 000979 600 EPHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISG 679 (1202)
Q Consensus 600 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g 679 (1202)
.+..++++||+|+|+. +++++|+|+|+++++||++||+||||||||||+++|+|..+ +.+|+|.++|
T Consensus 336 ~~~~i~~~~v~~~y~~-----------~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~--p~~G~i~~~g 402 (578)
T 4a82_A 336 KQGRIDIDHVSFQYND-----------NEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYD--VTSGQILIDG 402 (578)
T ss_dssp CSCCEEEEEEEECSCS-----------SSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSC--CSEEEEEETT
T ss_pred CCCeEEEEEEEEEcCC-----------CCCcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCC--CCCcEEEECC
Confidence 3457999999999852 23458999999999999999999999999999999999877 4589999999
Q ss_pred ccCCc---ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCC-------cccccccc
Q 000979 680 YPKKQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELN-------PLRQSLVG 749 (1202)
Q Consensus 680 ~~~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-------~~~~~~~~ 749 (1202)
.++.. ..+++.++||+|++.+++. ||+||+.++. +..+.+ .+.+.++..++. +-.|+.+|
T Consensus 403 ~~~~~~~~~~~r~~i~~v~Q~~~l~~~-tv~eni~~~~-----~~~~~~----~~~~~~~~~~~~~~~~~lp~g~~t~~~ 472 (578)
T 4a82_A 403 HNIKDFLTGSLRNQIGLVQQDNILFSD-TVKENILLGR-----PTATDE----EVVEAAKMANAHDFIMNLPQGYDTEVG 472 (578)
T ss_dssp EEGGGSCHHHHHHTEEEECSSCCCCSS-BHHHHHGGGC-----SSCCHH----HHHHHHHHTTCHHHHHTSTTGGGCBCC
T ss_pred EEhhhCCHHHHhhheEEEeCCCccCcc-cHHHHHhcCC-----CCCCHH----HHHHHHHHhCcHHHHHhCcchhhhhhc
Confidence 98654 3456789999999998875 9999998752 122222 244555555543 33456666
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEE
Q 000979 750 LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLM 829 (1202)
Q Consensus 750 ~~~~~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l 829 (1202)
..+ ..||||||||++|||||+++|++|+|||||||||+.++..+.+.|+++. +++|+|++||+++. .+.|||+++|
T Consensus 473 ~~g-~~LSgGq~Qrv~lAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~--~~~~d~i~~l 548 (578)
T 4a82_A 473 ERG-VKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLS-KDRTTLIVAHRLST--ITHADKIVVI 548 (578)
T ss_dssp GGG-TTSCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHT-TTSEEEEECSSGGG--TTTCSEEEEE
T ss_pred cCC-CcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHHH--HHcCCEEEEE
Confidence 543 4699999999999999999999999999999999999999999999874 57999999999873 4679999999
Q ss_pred ecCCEEEEEcCCC
Q 000979 830 KRGGQEIYVGPLG 842 (1202)
Q Consensus 830 ~~gG~~~~~G~~~ 842 (1202)
++ |+++..|+++
T Consensus 549 ~~-G~i~~~g~~~ 560 (578)
T 4a82_A 549 EN-GHIVETGTHR 560 (578)
T ss_dssp ET-TEEEEEECHH
T ss_pred EC-CEEEEECCHH
Confidence 85 8999999974
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-37 Score=383.26 Aligned_cols=215 Identities=22% Similarity=0.299 Sum_probs=178.4
Q ss_pred CceeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCc
Q 000979 601 PHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGY 680 (1202)
Q Consensus 601 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~ 680 (1202)
...++++||+++|+. +++++|+|+|+++++||++||+||||||||||+++|+|..+ +.+|+|.+||.
T Consensus 339 ~~~i~~~~v~~~y~~-----------~~~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~--p~~G~i~~~g~ 405 (582)
T 3b60_A 339 TGDLEFRNVTFTYPG-----------REVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYD--IDEGHILMDGH 405 (582)
T ss_dssp CCCEEEEEEEECSSS-----------SSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTC--CSEEEEEETTE
T ss_pred CCcEEEEEEEEEcCC-----------CCCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccC--CCCCeEEECCE
Confidence 356999999998841 11458999999999999999999999999999999999876 45899999998
Q ss_pred cCCc---ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCcc-------ccccccC
Q 000979 681 PKKQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPL-------RQSLVGL 750 (1202)
Q Consensus 681 ~~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~-------~~~~~~~ 750 (1202)
++.. ..+++.++||+|++.+++ .||+||+.++.. ...+. ++++++++.+++.+. .|+.+|.
T Consensus 406 ~~~~~~~~~~~~~i~~v~Q~~~l~~-~tv~eni~~~~~----~~~~~----~~~~~~l~~~~l~~~~~~~p~g~~~~~~~ 476 (582)
T 3b60_A 406 DLREYTLASLRNQVALVSQNVHLFN-DTVANNIAYART----EEYSR----EQIEEAARMAYAMDFINKMDNGLDTIIGE 476 (582)
T ss_dssp ETTTBCHHHHHHTEEEECSSCCCCS-SBHHHHHHTTTT----SCCCH----HHHHHHHHTTTCHHHHHHSTTGGGSBCCT
T ss_pred EccccCHHHHHhhCeEEccCCcCCC-CCHHHHHhccCC----CCCCH----HHHHHHHHHcCCHHHHHhccccccccccC
Confidence 8753 345678999999999887 599999987531 12222 236777777777543 3455555
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEe
Q 000979 751 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 830 (1202)
Q Consensus 751 ~~~~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~ 830 (1202)
. ...||||||||++|||||+++|++|+||||||+||+.+++.+.+.|+++.+ |+|+|++||+++. .+.|||+++|+
T Consensus 477 ~-~~~LSgGq~qrl~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~~~~--~~~~d~i~~l~ 552 (582)
T 3b60_A 477 N-GVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQK-NRTSLVIAHRLST--IEQADEIVVVE 552 (582)
T ss_dssp T-SCSSCHHHHHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHT-TSEEEEECSCGGG--TTTCSEEEEEE
T ss_pred C-CCCCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhC-CCEEEEEeccHHH--HHhCCEEEEEE
Confidence 4 357999999999999999999999999999999999999999999999864 9999999999863 46799999998
Q ss_pred cCCEEEEEcCCC
Q 000979 831 RGGQEIYVGPLG 842 (1202)
Q Consensus 831 ~gG~~~~~G~~~ 842 (1202)
+ |+++..|+++
T Consensus 553 ~-G~i~~~g~~~ 563 (582)
T 3b60_A 553 D-GIIVERGTHS 563 (582)
T ss_dssp T-TEEEEEECHH
T ss_pred C-CEEEEecCHH
Confidence 5 8999999863
|
| >4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.8e-36 Score=397.49 Aligned_cols=217 Identities=28% Similarity=0.381 Sum_probs=184.2
Q ss_pred CCceeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcC
Q 000979 600 EPHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISG 679 (1202)
Q Consensus 600 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g 679 (1202)
.++.++|+||+|+|+.+ .++++|+|+|+++++||.+||+||||||||||+++|.|..+ +.+|+|.+||
T Consensus 412 ~~g~I~~~nvsF~Y~~~----------~~~~vL~~isl~i~~G~~vaivG~sGsGKSTll~ll~~~~~--~~~G~I~idG 479 (1321)
T 4f4c_A 412 IKGDITVENVHFTYPSR----------PDVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYD--VLKGKITIDG 479 (1321)
T ss_dssp CCCCEEEEEEEECCSSS----------TTSCSEEEEEEEECTTCEEEEEECSSSCHHHHHHHHTTSSC--CSEEEEEETT
T ss_pred CCCcEEEEEeeeeCCCC----------CCCceeeceEEeecCCcEEEEEecCCCcHHHHHHHhccccc--cccCcccCCC
Confidence 34579999999999743 23468999999999999999999999999999999999877 5699999999
Q ss_pred ccCCc---ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCC-------Ccccccccc
Q 000979 680 YPKKQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVEL-------NPLRQSLVG 749 (1202)
Q Consensus 680 ~~~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l-------~~~~~~~~~ 749 (1202)
.+++. ..+|+.++||+|++.++. .|++|||.|+. +..+.+ ++.++++..++ .+-.||.+|
T Consensus 480 ~~i~~~~~~~lr~~i~~v~Q~~~Lf~-~TI~eNI~~g~-----~~~~~~----~v~~a~~~a~l~~~i~~lp~G~~T~vG 549 (1321)
T 4f4c_A 480 VDVRDINLEFLRKNVAVVSQEPALFN-CTIEENISLGK-----EGITRE----EMVAACKMANAEKFIKTLPNGYNTLVG 549 (1321)
T ss_dssp EETTTSCHHHHHHHEEEECSSCCCCS-EEHHHHHHTTC-----TTCCHH----HHHHHHHHTTCHHHHHHSTTTTSSEES
T ss_pred ccchhccHHHHhhcccccCCcceeeC-CchhHHHhhhc-----ccchHH----HHHHHHHHccchhHHHcCCCCCccEec
Confidence 98764 456788999999998875 69999999862 223333 24555555543 456788898
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEE
Q 000979 750 LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLM 829 (1202)
Q Consensus 750 ~~~~~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l 829 (1202)
..|. .||||||||++|||||++||+||+||||||+||+++++.+.+.|+++. +|+|+|+++|+++ ..+.+|+|++|
T Consensus 550 e~G~-~LSGGQkQRiaiARAl~~~~~IliLDE~tSaLD~~te~~i~~~l~~~~-~~~T~iiiaHrls--~i~~aD~Iivl 625 (1321)
T 4f4c_A 550 DRGT-QLSGGQKQRIAIARALVRNPKILLLDEATSALDAESEGIVQQALDKAA-KGRTTIIIAHRLS--TIRNADLIISC 625 (1321)
T ss_dssp SSSC-CCCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCTTTHHHHHHHHHHHH-TTSEEEEECSCTT--TTTTCSEEEEE
T ss_pred CCCC-CCCHHHHHHHHHHHHHccCCCEEEEecccccCCHHHHHHHHHHHHHHh-CCCEEEEEcccHH--HHHhCCEEEEe
Confidence 8765 599999999999999999999999999999999999999999999875 5899999999987 46889999999
Q ss_pred ecCCEEEEEcCCCc
Q 000979 830 KRGGQEIYVGPLGR 843 (1202)
Q Consensus 830 ~~gG~~~~~G~~~~ 843 (1202)
+ +|+++..|+.++
T Consensus 626 ~-~G~ive~Gth~e 638 (1321)
T 4f4c_A 626 K-NGQVVEVGDHRA 638 (1321)
T ss_dssp E-TTEEEEEECHHH
T ss_pred e-CCeeeccCCHHH
Confidence 8 589999999643
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-35 Score=329.54 Aligned_cols=197 Identities=22% Similarity=0.342 Sum_probs=148.2
Q ss_pred ceeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCcc
Q 000979 602 HSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP 681 (1202)
Q Consensus 602 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 681 (1202)
..++++|+++.+ +.+|+|+||++++||+++|+||||||||||+|+|+|..+ +.+|+|.++|
T Consensus 39 ~~l~~~~l~~~~---------------~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~--p~~G~I~~~g-- 99 (290)
T 2bbs_A 39 DSLSFSNFSLLG---------------TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELE--PSEGKIKHSG-- 99 (290)
T ss_dssp -----------C---------------CCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSC--EEEEEEECCS--
T ss_pred ceEEEEEEEEcC---------------ceEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC--CCCcEEEECC--
Confidence 357888888641 247999999999999999999999999999999999876 6799999988
Q ss_pred CCcccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccc-------cccccCCCCC
Q 000979 682 KKQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLR-------QSLVGLPGVS 754 (1202)
Q Consensus 682 ~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~-------~~~~~~~~~~ 754 (1202)
.++|++|++.+++. ||+||+. +. . .... .+++.++.+++.+.. ++..+.. ..
T Consensus 100 --------~i~~v~Q~~~l~~~-tv~enl~-~~--~----~~~~----~~~~~~~~~~l~~~l~~~~~~~~~~~~~~-~~ 158 (290)
T 2bbs_A 100 --------RISFCSQNSWIMPG-TIKENII-GV--S----YDEY----RYRSVIKACQLEEDISKFAEKDNIVLGEG-GI 158 (290)
T ss_dssp --------CEEEECSSCCCCSS-BHHHHHH-TT--C----CCHH----HHHHHHHHTTCHHHHHTSTTGGGCBC-----C
T ss_pred --------EEEEEeCCCccCcc-cHHHHhh-Cc--c----cchH----HHHHHHHHhChHHHHHhccccccchhcCc-cC
Confidence 37999999988875 9999997 32 1 1111 133445555554322 2222222 35
Q ss_pred CCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHH-HHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCC
Q 000979 755 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV-RNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGG 833 (1202)
Q Consensus 755 ~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l-~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG 833 (1202)
.||||||||++|||||+.+|++|+|||||+|||+.++..+++.+ +++. +|+|||++||+++ ..+.||++++|++ |
T Consensus 159 ~LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~ll~~~~-~~~tviivtHd~~--~~~~~d~i~~l~~-G 234 (290)
T 2bbs_A 159 TLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLM-ANKTRILVTSKME--HLKKADKILILHE-G 234 (290)
T ss_dssp CCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHCCCCCT-TTSEEEEECCCHH--HHHHSSEEEEEET-T
T ss_pred cCCHHHHHHHHHHHHHHCCCCEEEEECCcccCCHHHHHHHHHHHHHHhh-CCCEEEEEecCHH--HHHcCCEEEEEEC-C
Confidence 79999999999999999999999999999999999999999974 4553 5899999999975 3457999999985 8
Q ss_pred EEEEEcCCC
Q 000979 834 QEIYVGPLG 842 (1202)
Q Consensus 834 ~~~~~G~~~ 842 (1202)
+++..|+++
T Consensus 235 ~i~~~g~~~ 243 (290)
T 2bbs_A 235 SSYFYGTFS 243 (290)
T ss_dssp EEEEEECHH
T ss_pred eEEEeCCHH
Confidence 999999874
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-35 Score=395.93 Aligned_cols=217 Identities=27% Similarity=0.399 Sum_probs=177.4
Q ss_pred CCceeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcC
Q 000979 600 EPHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISG 679 (1202)
Q Consensus 600 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g 679 (1202)
..+.++++||+|+|+.+ .+.++|+||||++++||++||+||||||||||+++|+|..+ +.+|+|.++|
T Consensus 384 ~~g~i~~~~v~~~y~~~----------~~~~vL~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~g~~~--~~~G~i~i~g 451 (1284)
T 3g5u_A 384 IQGNLEFKNIHFSYPSR----------KEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYD--PLDGMVSIDG 451 (1284)
T ss_dssp CCCCEEEEEEEECCSST----------TSCCSEEEEEEEECTTCEEEEECCSSSSHHHHHHHTTTSSC--CSEEEEEETT
T ss_pred CCCeEEEEEEEEEcCCC----------CCCcceecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEECC
Confidence 34679999999999632 22458999999999999999999999999999999999877 4589999999
Q ss_pred ccCCc---ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcC-------CCcccccccc
Q 000979 680 YPKKQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVE-------LNPLRQSLVG 749 (1202)
Q Consensus 680 ~~~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~-------l~~~~~~~~~ 749 (1202)
.++.. ..+|+.+|||+|++.+++. ||+||+.++.. ..+.++ +++.++..+ +.+..|+.+|
T Consensus 452 ~~i~~~~~~~~r~~i~~v~Q~~~l~~~-ti~eNi~~g~~-----~~~~~~----~~~~~~~~~~~~~i~~l~~g~~t~~~ 521 (1284)
T 3g5u_A 452 QDIRTINVRYLREIIGVVSQEPVLFAT-TIAENIRYGRE-----DVTMDE----IEKAVKEANAYDFIMKLPHQFDTLVG 521 (1284)
T ss_dssp EEGGGSCHHHHHHHEEEECSSCCCCSS-CHHHHHHHHCS-----SCCHHH----HHHHHHHTTCHHHHHHSTTGGGCCCS
T ss_pred EEHHhCCHHHHHhheEEEcCCCccCCc-cHHHHHhcCCC-----CCCHHH----HHHHHHHhCcHHHHHhcccccccccc
Confidence 88654 3456789999999998875 99999998731 223332 233333332 3344567777
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEE
Q 000979 750 LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLM 829 (1202)
Q Consensus 750 ~~~~~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l 829 (1202)
..+ ..||||||||++|||||+++|+||+||||||+||+.+++.+.+.|+++. +|+|+|+++|+++ ....+|++++|
T Consensus 522 ~~g-~~LSgGq~QriaiARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~--~i~~~d~i~vl 597 (1284)
T 3g5u_A 522 ERG-AQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKAR-EGRTTIVIAHRLS--TVRNADVIAGF 597 (1284)
T ss_dssp SSS-CSSCHHHHHHHHHHHHHHHCCSEEEEESTTCSSCHHHHHHHHHHHHHHH-TTSEEEEECSCHH--HHTTCSEEEEC
T ss_pred CCC-CccCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHc-CCCEEEEEecCHH--HHHcCCEEEEE
Confidence 654 4699999999999999999999999999999999999999999998864 5999999999975 34669999999
Q ss_pred ecCCEEEEEcCCCc
Q 000979 830 KRGGQEIYVGPLGR 843 (1202)
Q Consensus 830 ~~gG~~~~~G~~~~ 843 (1202)
+ +|++++.|+.++
T Consensus 598 ~-~G~i~~~g~~~~ 610 (1284)
T 3g5u_A 598 D-GGVIVEQGNHDE 610 (1284)
T ss_dssp S-SSCCCCEECHHH
T ss_pred E-CCEEEEECCHHH
Confidence 8 489999999743
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A | Back alignment and structure |
|---|
Probab=99.97 E-value=1.3e-29 Score=319.29 Aligned_cols=195 Identities=20% Similarity=0.258 Sum_probs=158.2
Q ss_pred ceeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCcc
Q 000979 602 HSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP 681 (1202)
Q Consensus 602 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 681 (1202)
..+...|++++|. ++.+|+|+||++++||+++|+||||||||||||+|+| |.+ +|.+
T Consensus 434 ~~L~~~~ls~~yg-------------~~~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~Lag--------G~i--~g~~ 490 (986)
T 2iw3_A 434 EDLCNCEFSLAYG-------------AKILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIAN--------GQV--DGFP 490 (986)
T ss_dssp CEEEEEEEEEEET-------------TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHH--------TCS--TTCC
T ss_pred ceeEEeeEEEEEC-------------CEEeEecceEEEcCCCEEEEECCCCCCHHHHHHHHhC--------CCc--CCCc
Confidence 4577778888773 3568999999999999999999999999999999995 111 3433
Q ss_pred CCcccccceEEEeecCC-CCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCCCCCCCCHH
Q 000979 682 KKQETFARISGYCEQND-IHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELN-PLRQSLVGLPGVSGLSTE 759 (1202)
Q Consensus 682 ~~~~~~~~~~~~v~q~~-~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-~~~~~~~~~~~~~~LSgG 759 (1202)
... ...++|++|+. .+++.+||.|++.+ ... .. +++++++++.+|+. +..++.+ ..||||
T Consensus 491 ~~~---~~~~~~v~q~~~~~~~~ltv~e~l~~--~~~---~~-----~~~v~~~L~~lgL~~~~~~~~~-----~~LSGG 552 (986)
T 2iw3_A 491 TQE---ECRTVYVEHDIDGTHSDTSVLDFVFE--SGV---GT-----KEAIKDKLIEFGFTDEMIAMPI-----SALSGG 552 (986)
T ss_dssp CTT---TSCEEETTCCCCCCCTTSBHHHHHHT--TCS---SC-----HHHHHHHHHHTTCCHHHHHSBG-----GGCCHH
T ss_pred ccc---ceeEEEEcccccccccCCcHHHHHHH--hhc---CH-----HHHHHHHHHHcCCChhhhcCCc-----ccCCHH
Confidence 211 12368999874 67788999999975 111 11 34578999999995 5566654 479999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCCEEE-EE
Q 000979 760 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEI-YV 838 (1202)
Q Consensus 760 qrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~-~~ 838 (1202)
||||++|||+|+.+|+||||||||+|||+.++..+.+.|++ .|.|||++||+++ .+.+.||++++|.+ |+++ +.
T Consensus 553 qkQRvaLArAL~~~P~lLLLDEPTs~LD~~~~~~l~~~L~~---~g~tvIivSHdl~-~l~~~adrii~L~~-G~iv~~~ 627 (986)
T 2iw3_A 553 WKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNT---CGITSITISHDSV-FLDNVCEYIINYEG-LKLRKYK 627 (986)
T ss_dssp HHHHHHHHHHHHTTCSEEEEESTTTTCCHHHHHHHHHHHHH---SCSEEEEECSCHH-HHHHHCSEEEEEET-TEEEEEE
T ss_pred HHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHh---CCCEEEEEECCHH-HHHHhCCEEEEEEC-CeeecCC
Confidence 99999999999999999999999999999999999999987 5899999999975 57789999999985 7886 78
Q ss_pred cCCC
Q 000979 839 GPLG 842 (1202)
Q Consensus 839 G~~~ 842 (1202)
|+++
T Consensus 628 G~~~ 631 (986)
T 2iw3_A 628 GNFT 631 (986)
T ss_dssp SCHH
T ss_pred CCHH
Confidence 9863
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* | Back alignment and structure |
|---|
Probab=99.97 E-value=4e-31 Score=323.96 Aligned_cols=180 Identities=23% Similarity=0.250 Sum_probs=144.6
Q ss_pred EEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEE---------EEcCccCCcc-----cccceEEEee
Q 000979 630 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNI---------TISGYPKKQE-----TFARISGYCE 695 (1202)
Q Consensus 630 ~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i---------~~~g~~~~~~-----~~~~~~~~v~ 695 (1202)
.+|+|+| ++++||+++|+||||||||||||+|+|...+ .+|++ .++|.+.... ..+..+++++
T Consensus 106 ~~l~~vs-~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~p--~~G~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~i~~~~ 182 (607)
T 3bk7_A 106 FVLYRLP-IVKDGMVVGIVGPNGTGKTTAVKILAGQLIP--NLCEDNDSWDNVIRAFRGNELQNYFERLKNGEIRPVVKP 182 (607)
T ss_dssp CEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHTTSSCC--CTTTTCCCHHHHHHHTTTSTHHHHHHHHHHTSCCCEEEC
T ss_pred eeeCCCC-CCCCCCEEEEECCCCChHHHHHHHHhCCCCC--CCCccccccchhhheeCCEehhhhhhhhhhhhcceEEee
Confidence 4799999 9999999999999999999999999997653 24553 3455443210 1123467888
Q ss_pred cCCCCCC---CCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhh
Q 000979 696 QNDIHSP---FVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVA 772 (1202)
Q Consensus 696 q~~~~~~---~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~aL~~ 772 (1202)
|.....+ ..||+|++... .. +++++++++.+||.+..++.+ .+|||||||||+|||||+.
T Consensus 183 q~~~~~~~~~~~tv~e~l~~~------~~------~~~~~~~L~~lgL~~~~~~~~-----~~LSGGekQRvaIAraL~~ 245 (607)
T 3bk7_A 183 QYVDLLPKAVKGKVRELLKKV------DE------VGKFEEVVKELELENVLDREL-----HQLSGGELQRVAIAAALLR 245 (607)
T ss_dssp SCGGGGGGTCCSBHHHHHHHT------CC------SSCHHHHHHHTTCTTGGGSBG-----GGCCHHHHHHHHHHHHHHS
T ss_pred chhhhchhhccccHHHHhhhh------HH------HHHHHHHHHHcCCCchhCCCh-----hhCCHHHHHHHHHHHHHhc
Confidence 8643322 23999998631 11 123678999999998888764 4799999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEe
Q 000979 773 NPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 830 (1202)
Q Consensus 773 ~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~ 830 (1202)
+|++|||||||+|||+.++..+.+.|++++++|.|||++|||++ .+..++||+++|.
T Consensus 246 ~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvIivsHdl~-~~~~~adri~vl~ 302 (607)
T 3bk7_A 246 KAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHDLA-VLDYLSDVIHVVY 302 (607)
T ss_dssp CCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHH-HHHHHCSEEEEEE
T ss_pred CCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEecChH-HHHhhCCEEEEEC
Confidence 99999999999999999999999999999877999999999976 5678899999997
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.97 E-value=4.9e-31 Score=320.31 Aligned_cols=192 Identities=22% Similarity=0.263 Sum_probs=151.2
Q ss_pred eeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEE---------EE
Q 000979 607 DEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNI---------TI 677 (1202)
Q Consensus 607 ~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i---------~~ 677 (1202)
+|++++|. +...+|+|+| ++++||+++|+||||||||||+|+|+|...+ .+|++ .+
T Consensus 25 ~~ls~~yg------------~~~~~l~~vs-~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~p--~~G~~~~~~~~~~~~~ 89 (538)
T 1yqt_A 25 EDCVHRYG------------VNAFVLYRLP-VVKEGMVVGIVGPNGTGKSTAVKILAGQLIP--NLCGDNDSWDGVIRAF 89 (538)
T ss_dssp CCEEEECS------------TTCCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCC--CTTTTCCSHHHHHHHT
T ss_pred cCcEEEEC------------CccccccCcC-cCCCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCCccCcchhhhHHhh
Confidence 57888773 1124799999 9999999999999999999999999997653 24553 24
Q ss_pred cCccCCc-----ccccceEEEeecCCCCCCC---CCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCcccccccc
Q 000979 678 SGYPKKQ-----ETFARISGYCEQNDIHSPF---VTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVG 749 (1202)
Q Consensus 678 ~g~~~~~-----~~~~~~~~~v~q~~~~~~~---lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~ 749 (1202)
+|.+... ...+..+++++|+....+. .|+.|++.... . +++++++++.+|+.+..++.+
T Consensus 90 ~g~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~v~e~~~~~~------~------~~~~~~~l~~lgl~~~~~~~~- 156 (538)
T 1yqt_A 90 RGNELQNYFEKLKNGEIRPVVKPQYVDLIPKAVKGKVIELLKKAD------E------TGKLEEVVKALELENVLEREI- 156 (538)
T ss_dssp TTSTHHHHHHHHHTTSCCCEEECSCGGGSGGGCCSBHHHHHHHHC------S------SSCHHHHHHHTTCTTTTTSBG-
T ss_pred CCccHHHHHHHHHHHhhhhhhhhhhhhhcchhhhccHHHHHhhhh------H------HHHHHHHHHHcCCChhhhCCh-
Confidence 5544321 0112346888887544332 38999875310 0 123678999999988777764
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEE
Q 000979 750 LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLM 829 (1202)
Q Consensus 750 ~~~~~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l 829 (1202)
.+|||||||||+||+||+.+|+||||||||++||+.++..+.+.|++++++|.|||++||++. .+...|||+++|
T Consensus 157 ----~~LSgGekQRv~iAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvi~vsHd~~-~~~~~~dri~vl 231 (538)
T 1yqt_A 157 ----QHLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVLVVEHDLA-VLDYLSDIIHVV 231 (538)
T ss_dssp ----GGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHH-HHHHHCSEEEEE
T ss_pred ----hhCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEE
Confidence 579999999999999999999999999999999999999999999999878999999999976 577889999999
Q ss_pred ec
Q 000979 830 KR 831 (1202)
Q Consensus 830 ~~ 831 (1202)
.+
T Consensus 232 ~~ 233 (538)
T 1yqt_A 232 YG 233 (538)
T ss_dssp EE
T ss_pred cC
Confidence 73
|
| >3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus} | Back alignment and structure |
|---|
Probab=99.96 E-value=2.1e-30 Score=325.69 Aligned_cols=206 Identities=21% Similarity=0.285 Sum_probs=134.8
Q ss_pred eEEeecceEEEeCCeEEEEEcCCCCCHHHHH---------------------HHHhCCCCCc--eE---EEEEEEcCccC
Q 000979 629 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLM---------------------DVLAGRKTGG--YI---TGNITISGYPK 682 (1202)
Q Consensus 629 ~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl---------------------~~l~g~~~~~--~~---~G~i~~~g~~~ 682 (1202)
+++|+||||+|++||+++|+||||||||||+ +++.|...++ .+ .+.+.++|.+.
T Consensus 31 ~~~L~~vsl~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~~~~i~~~~~~i~~~~~~~ 110 (670)
T 3ux8_A 31 AHNLKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPDVDAIEGLSPAISIDQKTT 110 (670)
T ss_dssp STTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC--------------CCCSEEESCCCEEEESSCC-
T ss_pred ccceeccEEEECCCCEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhcccccCCccceeccccceEecCchh
Confidence 3479999999999999999999999999998 6776654322 22 35677777654
Q ss_pred CcccccceEEEeecCCC-------------------CCCCCCHHHHHHHHHHccCCCCCCHHHHH------HHHHHHHHH
Q 000979 683 KQETFARISGYCEQNDI-------------------HSPFVTIYESLLFSAWLRLSPEVDSETRK------MFIDEVMEL 737 (1202)
Q Consensus 683 ~~~~~~~~~~~v~q~~~-------------------~~~~lTv~e~l~~~~~~~~~~~~~~~~~~------~~~~~~l~~ 737 (1202)
.. ..++.+++|+|... .++.+||+||+.+...+..... .....+ ....++++.
T Consensus 111 ~~-~~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~ 188 (670)
T 3ux8_A 111 SR-NPRSTVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELTEK-EAQIARLILREIRDRLGFLQN 188 (670)
T ss_dssp -----CCBHHHHTTCC-------------------------CC---------------------------CHHHHHHHHH
T ss_pred hc-cchhceeeeechhhhHHHHHhhhcccccccccccccCCcHHHHHHHhhccccchh-hhHHHHHHHHHHHHHHHHHHH
Confidence 32 12333455555432 2456899999987533221110 000000 011245788
Q ss_pred cCCCcc-ccccccCCCCCCCCHHHHHHHHHHHHHhhCCC--EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecC
Q 000979 738 VELNPL-RQSLVGLPGVSGLSTEQRKRLTIAVELVANPS--IIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQ 814 (1202)
Q Consensus 738 l~l~~~-~~~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~--illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~ 814 (1202)
+||.+. .++.+ ..|||||||||+|||||+.+|+ +|||||||+|||+.++..+++.|++++++|.|||++|||
T Consensus 189 ~gL~~~~~~~~~-----~~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~g~tvi~vtHd 263 (670)
T 3ux8_A 189 VGLDYLTLSRSA-----GTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHD 263 (670)
T ss_dssp TTCTTCCTTCBG-----GGSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHHTTCEEEEECCC
T ss_pred cCCchhhhcCCc-----ccCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCC
Confidence 898764 45543 4799999999999999999998 999999999999999999999999998889999999999
Q ss_pred CCHHHHHhcceEEEEe-----cCCEEEEEcCCCc
Q 000979 815 PSIDIFEAFDELFLMK-----RGGQEIYVGPLGR 843 (1202)
Q Consensus 815 ~~~~~~~~~d~v~~l~-----~gG~~~~~G~~~~ 843 (1202)
++ ....||++++|. ++|++++.|++++
T Consensus 264 ~~--~~~~~d~ii~l~~g~~~~~G~i~~~g~~~~ 295 (670)
T 3ux8_A 264 ED--TMLAADYLIDIGPGAGIHGGEVVAAGTPEE 295 (670)
T ss_dssp HH--HHHHCSEEEEECSSSGGGCCSEEEEECHHH
T ss_pred HH--HHhhCCEEEEecccccccCCEEEEecCHHH
Confidence 75 456799999992 3589999999754
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.1e-28 Score=301.54 Aligned_cols=188 Identities=21% Similarity=0.319 Sum_probs=138.6
Q ss_pred EEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEE-----------EcCccCCc---ccccce--EEE
Q 000979 630 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIT-----------ISGYPKKQ---ETFARI--SGY 693 (1202)
Q Consensus 630 ~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~-----------~~g~~~~~---~~~~~~--~~~ 693 (1202)
..|++++ .+++||+++|+||||||||||||+|+|...+ .+|+|. +.|.+... ....+. ..+
T Consensus 92 ~~l~~l~-~~~~Gei~~LvGpNGaGKSTLLkiL~Gll~P--~~G~i~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 168 (608)
T 3j16_B 92 FKLHRLP-TPRPGQVLGLVGTNGIGKSTALKILAGKQKP--NLGRFDDPPEWQEIIKYFRGSELQNYFTKMLEDDIKAII 168 (608)
T ss_dssp CEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCC--CTTTTCCSSCHHHHHHHTTTSTHHHHHHHHHHTSCCCEE
T ss_pred eeecCCC-CCCCCCEEEEECCCCChHHHHHHHHhcCCCC--CCceEecccchhhhhheecChhhhhhhhHHHHHhhhhhh
Confidence 3577777 6899999999999999999999999997663 356552 22221110 000011 122
Q ss_pred eecCCCC------CCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHH
Q 000979 694 CEQNDIH------SPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIA 767 (1202)
Q Consensus 694 v~q~~~~------~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia 767 (1202)
.+|.... -+..++.+++.... .. .+++++++++.+++.+..++.+ ..|||||||||+||
T Consensus 169 ~~~~~~~~~~~~~~~~~~v~~~l~~~~------~~----~~~~~~~~l~~~gl~~~~~~~~-----~~LSgGe~Qrv~iA 233 (608)
T 3j16_B 169 KPQYVDNIPRAIKGPVQKVGELLKLRM------EK----SPEDVKRYIKILQLENVLKRDI-----EKLSGGELQRFAIG 233 (608)
T ss_dssp ECCCTTTHHHHCSSSSSHHHHHHHHHC------CS----CHHHHHHHHHHHTCTGGGGSCT-----TTCCHHHHHHHHHH
T ss_pred chhhhhhhhhhhcchhhHHHHHHhhhh------hh----HHHHHHHHHHHcCCcchhCCCh-----HHCCHHHHHHHHHH
Confidence 3332111 12235666554310 11 1234789999999998888764 57999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCCEEEE
Q 000979 768 VELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIY 837 (1202)
Q Consensus 768 ~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~ 837 (1202)
|||+.+|++|+|||||+|||+.++..+.+.|++++++|.|||+++|+++ ++..++||+++|. ||..+|
T Consensus 234 raL~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHdl~-~~~~~~drv~vl~-~~~~~~ 301 (608)
T 3j16_B 234 MSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYVICVEHDLS-VLDYLSDFVCIIY-GVPSVY 301 (608)
T ss_dssp HHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHGGGTTTCEEEEECSCHH-HHHHHCSEEEEEE-SCTTTE
T ss_pred HHHHhCCCEEEEECcccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEe-CCcccc
Confidence 9999999999999999999999999999999999888999999999986 6788999999997 455444
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=99.95 E-value=2.1e-28 Score=296.04 Aligned_cols=172 Identities=23% Similarity=0.271 Sum_probs=132.6
Q ss_pred EEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEE-----------EEcCccCCc---c------cccceEEEeecC
Q 000979 638 AFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNI-----------TISGYPKKQ---E------TFARISGYCEQN 697 (1202)
Q Consensus 638 ~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i-----------~~~g~~~~~---~------~~~~~~~~v~q~ 697 (1202)
..++||++||+||||||||||+|+|+|...+ .+|++ .++|.++.. . .......|+.|.
T Consensus 21 ~~~~Gei~gLiGpNGaGKSTLlkiL~Gl~~p--~~G~i~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~ 98 (538)
T 3ozx_A 21 TPKNNTILGVLGKNGVGKTTVLKILAGEIIP--NFGDPNSKVGKDEVLKRFRGKEIYNYFKELYSNELKIVHKIQYVEYA 98 (538)
T ss_dssp CCCTTEEEEEECCTTSSHHHHHHHHTTSSCC--CTTCTTSCCCHHHHHHHHTTSTTHHHHHHHHTTCCCEEEECSCTTGG
T ss_pred CCCCCCEEEEECCCCCcHHHHHHHHhcCCCC--CCCccccccchhhHHhhcCCeeHHHHHHHHhhcccchhhccchhhhh
Confidence 4579999999999999999999999997653 35666 455654321 0 011112233333
Q ss_pred CCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEE
Q 000979 698 DIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSII 777 (1202)
Q Consensus 698 ~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~il 777 (1202)
+.++ ..|++|++.... . +++++++++.+++.+..++.+ +.|||||||||+|||||+.+|+||
T Consensus 99 ~~~~-~~~v~~~l~~~~------~------~~~~~~~l~~l~l~~~~~~~~-----~~LSgGe~Qrv~iA~aL~~~p~il 160 (538)
T 3ozx_A 99 SKFL-KGTVNEILTKID------E------RGKKDEVKELLNMTNLWNKDA-----NILSGGGLQRLLVAASLLREADVY 160 (538)
T ss_dssp GTTC-CSBHHHHHHHHC------C------SSCHHHHHHHTTCGGGTTSBG-----GGCCHHHHHHHHHHHHHHSCCSEE
T ss_pred hhhc-cCcHHHHhhcch------h------HHHHHHHHHHcCCchhhcCCh-----hhCCHHHHHHHHHHHHHHcCCCEE
Confidence 3332 348888664210 0 123578899999998888764 579999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEec
Q 000979 778 FMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKR 831 (1202)
Q Consensus 778 llDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~ 831 (1202)
+|||||++||+.++..+.+.|+++++ |+|||+++|+++ ++...||++++|..
T Consensus 161 llDEPts~LD~~~~~~l~~~l~~l~~-g~tii~vsHdl~-~~~~~~d~i~vl~~ 212 (538)
T 3ozx_A 161 IFDQPSSYLDVRERMNMAKAIRELLK-NKYVIVVDHDLI-VLDYLTDLIHIIYG 212 (538)
T ss_dssp EEESTTTTCCHHHHHHHHHHHHHHCT-TSEEEEECSCHH-HHHHHCSEEEEEEE
T ss_pred EEECCcccCCHHHHHHHHHHHHHHhC-CCEEEEEEeChH-HHHhhCCEEEEecC
Confidence 99999999999999999999999965 999999999986 67889999999973
|
| >2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.92 E-value=6.6e-28 Score=285.85 Aligned_cols=196 Identities=14% Similarity=0.061 Sum_probs=148.4
Q ss_pred ecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEE-E-EEEcCccCCcccccceEEEeecCCC---CCCCCCHH
Q 000979 633 NGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITG-N-ITISGYPKKQETFARISGYCEQNDI---HSPFVTIY 707 (1202)
Q Consensus 633 ~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G-~-i~~~g~~~~~~~~~~~~~~v~q~~~---~~~~lTv~ 707 (1202)
.++|+++++||+++|+||||||||||+|+|+|... +.+| + |.++|. .++.++|++|+.. +.+.+|++
T Consensus 129 ~~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~--p~~G~~pI~vdg~------~~~~i~~vpq~~~l~~~~~~~tv~ 200 (460)
T 2npi_A 129 EKIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYAL--KFNAYQPLYINLD------PQQPIFTVPGCISATPISDILDAQ 200 (460)
T ss_dssp HHHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTH--HHHCCCCEEEECC------TTSCSSSCSSCCEEEECCSCCCTT
T ss_pred hcCceEeCCCCEEEEECCCCCCHHHHHHHHhCccc--ccCCceeEEEcCC------ccCCeeeeccchhhcccccccchh
Confidence 47999999999999999999999999999999876 3478 8 999982 2466899999874 44567999
Q ss_pred HHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHH--HhhCCCE----EEEeC
Q 000979 708 ESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVE--LVANPSI----IFMDE 781 (1202)
Q Consensus 708 e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~a--L~~~p~i----lllDE 781 (1202)
||+ |+....... .. +++++++++.+|+.+..+ ...|||||||||+|||+ |+.+|++ |||||
T Consensus 201 eni-~~~~~~~~~--~~---~~~~~~ll~~~gl~~~~~-------~~~LSgGq~qrlalAra~rL~~~p~i~~sGLlLDE 267 (460)
T 2npi_A 201 LPT-WGQSLTSGA--TL---LHNKQPMVKNFGLERINE-------NKDLYLECISQLGQVVGQRLHLDPQVRRSGCIVDT 267 (460)
T ss_dssp CTT-CSCBCBSSC--CS---SCCBCCEECCCCSSSGGG-------CHHHHHHHHHHHHHHHHHHHHHCHHHHHSCEEEEC
T ss_pred hhh-cccccccCc--ch---HHHHHHHHHHhCCCcccc-------hhhhhHHHHHHHHHHHHHHhccCcccCcceEEEeC
Confidence 998 654321111 00 112456677788876654 24799999999999999 9999999 99999
Q ss_pred -CCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCC--H---HHHHhcce-----EEEEecCCEEEEEcCCCcc----ch
Q 000979 782 -PTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPS--I---DIFEAFDE-----LFLMKRGGQEIYVGPLGRH----SC 846 (1202)
Q Consensus 782 -PtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~--~---~~~~~~d~-----v~~l~~gG~~~~~G~~~~~----~~ 846 (1202)
||++||+. ...+.+.+++ .|+|+|+++|+.+ . .+.+++|+ +++|.++|+++ .|++++. ..
T Consensus 268 pPts~LD~~-~~~l~~l~~~---~~~tviiVth~~~~~l~~~~~~~~~dr~~~~~vi~l~k~G~iv-~g~~~~~~~~~~~ 342 (460)
T 2npi_A 268 PSISQLDEN-LAELHHIIEK---LNVNIMLVLCSETDPLWEKVKKTFGPELGNNNIFFIPKLDGVS-AVDDVYKRSLQRT 342 (460)
T ss_dssp CCGGGSCSS-CHHHHHHHHH---TTCCEEEEECCSSCTHHHHHHHHHHHHHCGGGEEEECCCTTCC-CCCHHHHHHHHHH
T ss_pred CcccccChh-HHHHHHHHHH---hCCCEEEEEccCchhhhHHHHHHhcccccCCEEEEEeCCCcEE-ECCHHHHhhhhHH
Confidence 99999999 5555555543 3789999999987 2 34578999 99998347788 8886432 12
Q ss_pred hHHHHHhh
Q 000979 847 HLISYFEA 854 (1202)
Q Consensus 847 ~~~~~f~~ 854 (1202)
.+.+||..
T Consensus 343 ~i~~~f~g 350 (460)
T 2npi_A 343 SIREYFYG 350 (460)
T ss_dssp HHHHHHHC
T ss_pred HHHHHhCC
Confidence 34567643
|
| >4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.91 E-value=1.7e-24 Score=257.77 Aligned_cols=203 Identities=17% Similarity=0.141 Sum_probs=141.0
Q ss_pred EeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCC------------------------------------ceEEEE
Q 000979 631 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG------------------------------------GYITGN 674 (1202)
Q Consensus 631 iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~------------------------------------~~~~G~ 674 (1202)
+++++|+++.+| +++|+|||||||||||++|++...+ ....|.
T Consensus 50 ~l~~v~l~~~~G-~~~lvG~NGaGKStLl~aI~~l~~~~~~~~~i~~g~~~~~v~~~~~~~~~~~~~~l~r~~~~~~~~~ 128 (415)
T 4aby_A 50 TITQLELELGGG-FCAFTGETGAGKSIIVDALGLLLGGRANHDLIRSGEKELLVTGFWGDGDESEADSASRRLSSAGRGA 128 (415)
T ss_dssp TEEEEEEECCSS-EEEEEESHHHHHHHHTHHHHHHTTCCCCGGGBCTTCSEEEEEEEC--------CEEEEEEETTSCEE
T ss_pred ceeeEEEecCCC-cEEEECCCCCCHHHHHHHHHHHhCCCccHHHhcCCCCeEEEEEEEEecCCCceEEEEEEEecCCceE
Confidence 589999999999 9999999999999999999653211 011578
Q ss_pred EEEcCccCCccc----ccceEEEeecCCCCCCCCCHHHHHHHHHHccC-----------------------CCCC----C
Q 000979 675 ITISGYPKKQET----FARISGYCEQNDIHSPFVTIYESLLFSAWLRL-----------------------SPEV----D 723 (1202)
Q Consensus 675 i~~~g~~~~~~~----~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~-----------------------~~~~----~ 723 (1202)
+.+||.+.+... .+..+++++|++.++.. +..+...|.-.... .... .
T Consensus 129 i~ing~~~~~~~~~~~~~~~i~~~~q~~~l~l~-~~~~~r~~ld~~~~~~~~~~~~~~~~y~~~~~~~~~l~~~~~~~~~ 207 (415)
T 4aby_A 129 ARLSGEVVSVRELQEWAQGRLTIHWQHSAVSLL-SPANQRGLLDRRVTKEAQAYAAAHAAWREAVSRLERLQASESSKHP 207 (415)
T ss_dssp EEETTEEECHHHHHHHHTTTEEEETTTCTTTTS-SHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHC---------
T ss_pred EEECCEECCHHHHHHHHhhceEEecCccccccc-CHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHhhhhhhcC
Confidence 999998875421 22347999998766542 45444443211100 0000 0
Q ss_pred ------------------------------HHHHHHHHHHHHHHcCCCccc----------------cc---cccC----
Q 000979 724 ------------------------------SETRKMFIDEVMELVELNPLR----------------QS---LVGL---- 750 (1202)
Q Consensus 724 ------------------------------~~~~~~~~~~~l~~l~l~~~~----------------~~---~~~~---- 750 (1202)
.+.....+++.++.+++.+.. +. ....
T Consensus 208 ~~i~~~~~l~~~~~~l~~~~~~l~~~R~~~~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 287 (415)
T 4aby_A 208 TSLVPRGSVDALHAELLKVGQALDAAREREAEPLVDSLLAVIRELGMPHARMEFALSALAEPAAYGLSDVLLRFSANPGE 287 (415)
T ss_dssp --CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCTTCEEEEEEEEEEEEETTEEEEEEEEEESSSSC
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEEEeeccCCCCCCCceEEEEEEcCCCC
Confidence 000112344555556554310 00 0100
Q ss_pred --CCCCC-CCHHHHHHHHHHHHHhhCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcce
Q 000979 751 --PGVSG-LSTEQRKRLTIAVELVANP--SIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDE 825 (1202)
Q Consensus 751 --~~~~~-LSgGqrqRv~ia~aL~~~p--~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~ 825 (1202)
..++. ||||||||++||++|+.+| ++|||||||+|||+.++..+.+.|++++ +|.|||+|||++ ++.+.||+
T Consensus 288 ~~~~~~~~lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~-~~~~vi~itH~~--~~~~~~d~ 364 (415)
T 4aby_A 288 ELGPLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLA-DTRQVLVVTHLA--QIAARAHH 364 (415)
T ss_dssp CCCBGGGCSCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHT-TTSEEEEECSCH--HHHTTCSE
T ss_pred cccchhhhcCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHh-CCCEEEEEeCcH--HHHhhcCe
Confidence 01112 6999999999999999999 9999999999999999999999999997 689999999997 46788999
Q ss_pred EEEE----ecCCEEEEEc
Q 000979 826 LFLM----KRGGQEIYVG 839 (1202)
Q Consensus 826 v~~l----~~gG~~~~~G 839 (1202)
+++| . +|+++...
T Consensus 365 i~~l~k~~~-~G~~~~~~ 381 (415)
T 4aby_A 365 HYKVEKQVE-DGRTVSHV 381 (415)
T ss_dssp EEEEEEEEE-TTEEEEEE
T ss_pred EEEEEEecc-CCceEEEE
Confidence 9999 6 47776554
|
| >3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.87 E-value=1.9e-25 Score=237.29 Aligned_cols=144 Identities=15% Similarity=0.142 Sum_probs=98.5
Q ss_pred CceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCCcccccceEEEeecCCCCCCCCCH
Q 000979 627 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTI 706 (1202)
Q Consensus 627 ~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~lTv 706 (1202)
+++.+|+|| ++||+++|+||||||||||+++|+|. .+ .+|+|............++.+||++|++
T Consensus 11 g~~~~l~~i----~~Ge~~~liG~nGsGKSTLl~~l~Gl-~p--~~G~I~~~~~~~~~~~~~~~ig~v~q~~-------- 75 (208)
T 3b85_A 11 GQKHYVDAI----DTNTIVFGLGPAGSGKTYLAMAKAVQ-AL--QSKQVSRIILTRPAVEAGEKLGFLPGTL-------- 75 (208)
T ss_dssp HHHHHHHHH----HHCSEEEEECCTTSSTTHHHHHHHHH-HH--HTTSCSEEEEEECSCCTTCCCCSSCC----------
T ss_pred hHHHHHHhc----cCCCEEEEECCCCCCHHHHHHHHhcC-CC--cCCeeeeEEecCCchhhhcceEEecCCH--------
Confidence 445689996 89999999999999999999999998 52 2444421100111123456789999975
Q ss_pred HHHH-HHHH----HccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeC
Q 000979 707 YESL-LFSA----WLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDE 781 (1202)
Q Consensus 707 ~e~l-~~~~----~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~illlDE 781 (1202)
+||+ .+.. .+.. ... ++.++++++. + | |||||++|||||+.+|++|||||
T Consensus 76 ~enl~~~~~~~~~~~~~--~~~----~~~~~~~l~~-g----------------l--Gq~qrv~lAraL~~~p~lllLDE 130 (208)
T 3b85_A 76 NEKIDPYLRPLHDALRD--MVE----PEVIPKLMEA-G----------------I--VEVAPLAYMRGRTLNDAFVILDE 130 (208)
T ss_dssp ----CTTTHHHHHHHTT--TSC----TTHHHHHHHT-T----------------S--EEEEEGGGGTTCCBCSEEEEECS
T ss_pred HHHHHHHHHHHHHHHHH--hcc----HHHHHHHHHh-C----------------C--chHHHHHHHHHHhcCCCEEEEeC
Confidence 4555 2211 1110 001 1124455543 2 2 99999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCC
Q 000979 782 PTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPS 816 (1202)
Q Consensus 782 PtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~ 816 (1202)
||+| ++..+.+.|+++ ++|+||| +|||++
T Consensus 131 Pts~----~~~~l~~~l~~l-~~g~tii-vtHd~~ 159 (208)
T 3b85_A 131 AQNT----TPAQMKMFLTRL-GFGSKMV-VTGDIT 159 (208)
T ss_dssp GGGC----CHHHHHHHHTTB-CTTCEEE-EEEC--
T ss_pred Cccc----cHHHHHHHHHHh-cCCCEEE-EECCHH
Confidence 9999 888999999988 6689999 999975
|
| >3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=4.2e-22 Score=230.93 Aligned_cols=82 Identities=22% Similarity=0.357 Sum_probs=74.7
Q ss_pred CCCCCHHHHHHHHHHHHHh------hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceE
Q 000979 753 VSGLSTEQRKRLTIAVELV------ANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDEL 826 (1202)
Q Consensus 753 ~~~LSgGqrqRv~ia~aL~------~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v 826 (1202)
+..||||||||++||+||+ .+|++|||||||+|||+.++..+++.|+++.++|+|||++||+++ ..+.+|++
T Consensus 277 ~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~~g~tvi~itH~~~--~~~~~d~~ 354 (365)
T 3qf7_A 277 ARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKVIVFITHDRE--FSEAFDRK 354 (365)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGGSSSEEEEEESCHH--HHTTCSCE
T ss_pred chhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEecchH--HHHhCCEE
Confidence 4579999999999999999 799999999999999999999999999999888999999999974 47889999
Q ss_pred EEEecCCEEEE
Q 000979 827 FLMKRGGQEIY 837 (1202)
Q Consensus 827 ~~l~~gG~~~~ 837 (1202)
++|.+ |+++.
T Consensus 355 ~~l~~-G~i~~ 364 (365)
T 3qf7_A 355 LRITG-GVVVN 364 (365)
T ss_dssp EEEET-TEEC-
T ss_pred EEEEC-CEEEe
Confidence 99985 78764
|
| >4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=1.5e-23 Score=216.87 Aligned_cols=143 Identities=13% Similarity=0.207 Sum_probs=100.2
Q ss_pred cceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCCcccccceEEEeecCCCCCC-CCCHHHHHHH
Q 000979 634 GVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSP-FVTIYESLLF 712 (1202)
Q Consensus 634 ~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~-~lTv~e~l~~ 712 (1202)
||||++++||+++|+||||||||||++++.+... . +++ .. ..|+++|++.... ..++.+.+..
T Consensus 1 ~vsl~i~~gei~~l~G~nGsGKSTl~~~~~~~~~--~------~~~-----d~---~~g~~~~~~~~~~~~~~~~~~~~~ 64 (171)
T 4gp7_A 1 SMKLTIPELSLVVLIGSSGSGKSTFAKKHFKPTE--V------ISS-----DF---CRGLMSDDENDQTVTGAAFDVLHY 64 (171)
T ss_dssp CEEEEEESSEEEEEECCTTSCHHHHHHHHSCGGG--E------EEH-----HH---HHHHHCSSTTCGGGHHHHHHHHHH
T ss_pred CccccCCCCEEEEEECCCCCCHHHHHHHHccCCe--E------Ecc-----HH---HHHHhcCcccchhhHHHHHHHHHH
Confidence 6899999999999999999999999999754211 1 111 01 1256677642110 0111121111
Q ss_pred HHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHH---
Q 000979 713 SAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR--- 789 (1202)
Q Consensus 713 ~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~--- 789 (1202)
.... ....+.....+.. ...|||||||++|||+|+.+|++|+|||||++||+.
T Consensus 65 -----------------~~~~-~~~~g~~~~~~~~------~~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~ 120 (171)
T 4gp7_A 65 -----------------IVSK-RLQLGKLTVVDAT------NVQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKN 120 (171)
T ss_dssp -----------------HHHH-HHHTTCCEEEESC------CCSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHT
T ss_pred -----------------HHHH-HHhCCCeEEEECC------CCCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhc
Confidence 1111 2223444333332 247999999999999999999999999999999999
Q ss_pred -------------HHHHHHHHHHHHHhCCCEEEEEecCCC
Q 000979 790 -------------AAAIVMRTVRNTVDTGRTVVCTIHQPS 816 (1202)
Q Consensus 790 -------------~~~~v~~~l~~~~~~g~tvi~~~H~~~ 816 (1202)
....+.+.|++++++|.|+|++||+++
T Consensus 121 R~~~~~~~~vi~~~~~~l~~~l~~l~~~g~tvi~vtH~~~ 160 (171)
T 4gp7_A 121 RTDRQVEEYVIRKHTQQMKKSIKGLQREGFRYVYILNSPE 160 (171)
T ss_dssp CSSCCCCHHHHHHHHHHHHHHSTTHHHHTCSEEEEECSHH
T ss_pred ccCCCCCHHHHHHHHHHhhhhhhhHHhcCCcEEEEeCCHH
Confidence 558899999888777999999999964
|
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C | Back alignment and structure |
|---|
Probab=99.87 E-value=1.4e-22 Score=230.47 Aligned_cols=119 Identities=23% Similarity=0.284 Sum_probs=105.6
Q ss_pred hhhhhhhhHHHHHHHHHhCCcccccccccCCcccccCccccchhhHHHHHhcCCeEeeeeCCCccccHHHHHHHHHHHHH
Q 000979 37 ATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQ 116 (1202)
Q Consensus 37 ~~~~~~~~~~v~~il~~lgL~~~~dT~VG~~~~~gLSGGQKqRvsIAraLv~~P~ILlLDEpTSGLDs~sa~~vv~~L~~ 116 (1202)
...+++.+++++++|+.+||.+.+|..++ +|||||||||+|||||+.+|+||+|||||||||+.++.++++.|++
T Consensus 134 ~~~~~~~~~~v~~lL~~vgL~~~~~~~~~-----~LSGGqkQRVaIArAL~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~ 208 (366)
T 3tui_C 134 NTPKDEVKRRVTELLSLVGLGDKHDSYPS-----NLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKD 208 (366)
T ss_dssp CCCHHHHHHHHHHHHHHHTCGGGTTCCTT-----TSCHHHHHHHHHHHHTTTCCSEEEEESTTTTSCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHcCCchHhcCChh-----hCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHH
Confidence 34456677789999999999998888875 7999999999999999999999999999999999999999999999
Q ss_pred HhHhCCCEEEEEecCCChHHHhhhcceEEecCCcEEEEcCcchHH
Q 000979 117 NIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVL 161 (1202)
Q Consensus 117 ~a~~~~tTiIiaihQp~~s~~~~fD~IvvL~~G~vvy~G~~~el~ 161 (1202)
+.++.++|||+++|.. ..+.+.+|+|++|++|++++.|+++++.
T Consensus 209 l~~~~g~Tii~vTHdl-~~~~~~aDrv~vl~~G~iv~~g~~~ev~ 252 (366)
T 3tui_C 209 INRRLGLTILLITHEM-DVVKRICDCVAVISNGELIEQDTVSEVF 252 (366)
T ss_dssp HHHHSCCEEEEEESCH-HHHHHHCSEEEEEETTEEEECCBHHHHH
T ss_pred HHHhCCCEEEEEecCH-HHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 8766688888776643 3566789999999999999999999886
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=2.4e-22 Score=225.11 Aligned_cols=112 Identities=28% Similarity=0.342 Sum_probs=96.5
Q ss_pred HHHHHHHHhCCc-------ccccccccCCcccccCccccchhhHHHHHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHh
Q 000979 46 ITDYYLKVLGLD-------VCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNI 118 (1202)
Q Consensus 46 ~v~~il~~lgL~-------~~~dT~VG~~~~~gLSGGQKqRvsIAraLv~~P~ILlLDEpTSGLDs~sa~~vv~~L~~~a 118 (1202)
.++..++..+|. +..||.+| +.+.+|||||||||+|||||+++|+||+|||||||||+.++..|++.|+++.
T Consensus 159 ~~~~~~~~~~l~~~i~~lp~gl~t~~~-~~g~~LSGGqrQRvaiARAL~~~p~iLlLDEPts~LD~~~~~~i~~~l~~l~ 237 (306)
T 3nh6_A 159 EVEAAAQAAGIHDAIMAFPEGYRTQVG-ERGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVC 237 (306)
T ss_dssp HHHHHHHHHTCHHHHHHSTTGGGCEES-TTSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSSCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCcHHHHHhccchhhhHhc-CCcCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHc
Confidence 345566665554 47899998 6778899999999999999999999999999999999999999999999875
Q ss_pred HhCCCEEEEEecCCChHHHhhhcceEEecCCcEEEEcCcchHHH
Q 000979 119 HINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLE 162 (1202)
Q Consensus 119 ~~~~tTiIiaihQp~~s~~~~fD~IvvL~~G~vvy~G~~~el~~ 162 (1202)
+++|+|++| |+.+++..+|+|+||++|+++++|+|+++++
T Consensus 238 -~~~Tvi~it---H~l~~~~~aD~i~vl~~G~iv~~G~~~el~~ 277 (306)
T 3nh6_A 238 -ANRTTIVVA---HRLSTVVNADQILVIKDGCIVERGRHEALLS 277 (306)
T ss_dssp -TTSEEEEEC---CSHHHHHTCSEEEEEETTEEEEEECHHHHHH
T ss_pred -CCCEEEEEE---cChHHHHcCCEEEEEECCEEEEECCHHHHHh
Confidence 344555555 7788888999999999999999999999985
|
| >1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.86 E-value=6e-22 Score=226.59 Aligned_cols=87 Identities=22% Similarity=0.226 Sum_probs=75.1
Q ss_pred CCCCCHHHHHHHHHHHHHh----hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceE--
Q 000979 753 VSGLSTEQRKRLTIAVELV----ANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDEL-- 826 (1202)
Q Consensus 753 ~~~LSgGqrqRv~ia~aL~----~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v-- 826 (1202)
+..||||||||++||++|+ .+|++|+|||||++||+..+..+.+.|+++. +|.|+|++||+++ +.+.+|++
T Consensus 217 ~~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~-~~~~vi~~tH~~~--~~~~~d~~~~ 293 (322)
T 1e69_A 217 LSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENS-KHTQFIVITHNKI--VMEAADLLHG 293 (322)
T ss_dssp GGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHT-TTSEEEEECCCTT--GGGGCSEEEE
T ss_pred hhhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEECCHH--HHhhCceEEE
Confidence 3579999999999999997 5889999999999999999999999999984 5899999999964 67889987
Q ss_pred EEEecCCEEEEEcCCC
Q 000979 827 FLMKRGGQEIYVGPLG 842 (1202)
Q Consensus 827 ~~l~~gG~~~~~G~~~ 842 (1202)
++|.+|...+.....+
T Consensus 294 v~~~~g~s~~~~~~~~ 309 (322)
T 1e69_A 294 VTMVNGVSAIVPVEVE 309 (322)
T ss_dssp EEESSSCEEEEECCC-
T ss_pred EEEeCCEEEEEEEEcc
Confidence 7888776777766654
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} | Back alignment and structure |
|---|
Probab=99.85 E-value=7.9e-22 Score=218.23 Aligned_cols=118 Identities=25% Similarity=0.276 Sum_probs=104.6
Q ss_pred hhhhhhHHHHHHHHHhCCcccccccccCCcccccCccccchhhHHHHHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHh
Q 000979 39 EGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNI 118 (1202)
Q Consensus 39 ~~~~~~~~v~~il~~lgL~~~~dT~VG~~~~~gLSGGQKqRvsIAraLv~~P~ILlLDEpTSGLDs~sa~~vv~~L~~~a 118 (1202)
..++.+++++++++.+||.+..|..++ .|||||||||+|||||+.+|+||+|||||||||+.++..+++.++++.
T Consensus 116 ~~~~~~~~~~~~l~~~~L~~~~~~~~~-----~LSgGqkQRv~iAraL~~~P~lLlLDEPts~LD~~~~~~i~~~l~~l~ 190 (275)
T 3gfo_A 116 PEDEIRKRVDNALKRTGIEHLKDKPTH-----CLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQ 190 (275)
T ss_dssp CHHHHHHHHHHHHHHTTCGGGTTSBGG-----GSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHcCCchhhcCCcc-----cCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHH
Confidence 345667788999999999998888775 799999999999999999999999999999999999999999999986
Q ss_pred HhCCCEEEEEecCCChHHHhhhcceEEecCCcEEEEcCcchHHH
Q 000979 119 HINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLE 162 (1202)
Q Consensus 119 ~~~~tTiIiaihQp~~s~~~~fD~IvvL~~G~vvy~G~~~el~~ 162 (1202)
++.++|||++.|... .+.+.+|+|++|++|++++.|+++++..
T Consensus 191 ~~~g~tvi~vtHdl~-~~~~~~drv~~l~~G~i~~~g~~~~~~~ 233 (275)
T 3gfo_A 191 KELGITIIIATHDID-IVPLYCDNVFVMKEGRVILQGNPKEVFA 233 (275)
T ss_dssp HHHCCEEEEEESCCS-SGGGGCSEEEEEETTEEEEEECHHHHTH
T ss_pred hhCCCEEEEEecCHH-HHHHhCCEEEEEECCEEEEECCHHHHhc
Confidence 345888888877655 5667899999999999999999998864
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=99.84 E-value=2.5e-21 Score=220.37 Aligned_cols=117 Identities=19% Similarity=0.248 Sum_probs=104.7
Q ss_pred hhhhhHHHHHHHHHhCCcccccccccCCcccccCccccchhhHHHHHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHhH
Q 000979 40 GQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIH 119 (1202)
Q Consensus 40 ~~~~~~~v~~il~~lgL~~~~dT~VG~~~~~gLSGGQKqRvsIAraLv~~P~ILlLDEpTSGLDs~sa~~vv~~L~~~a~ 119 (1202)
+++.+++++++++.+||.+..|..++ +|||||||||+|||||+.+|+||+|||||||||+.++.++.+.++++.+
T Consensus 112 ~~~~~~~v~~~l~~~gL~~~~~r~~~-----~LSGGq~QRValArAL~~~P~lLLLDEPts~LD~~~r~~l~~~l~~~~~ 186 (359)
T 3fvq_A 112 TAQERQRIEAMLELTGISELAGRYPH-----ELSGGQQQRAALARALAPDPELILLDEPFSALDEQLRRQIREDMIAALR 186 (359)
T ss_dssp SHHHHHHHHHHHHHHTCGGGTTSCGG-----GSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCchHhcCChh-----hCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH
Confidence 45667789999999999998888874 7999999999999999999999999999999999999999998888776
Q ss_pred hCCCEEEEEecCCChHHHhhhcceEEecCCcEEEEcCcchHHH
Q 000979 120 INSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLE 162 (1202)
Q Consensus 120 ~~~tTiIiaihQp~~s~~~~fD~IvvL~~G~vvy~G~~~el~~ 162 (1202)
+.++|+|+++| ...++.+++|+|+||++|++++.|+++++..
T Consensus 187 ~~g~tvi~vTH-d~~ea~~~aDri~vl~~G~i~~~g~~~el~~ 228 (359)
T 3fvq_A 187 ANGKSAVFVSH-DREEALQYADRIAVMKQGRILQTASPHELYR 228 (359)
T ss_dssp HTTCEEEEECC-CHHHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred hCCCEEEEEeC-CHHHHHHHCCEEEEEECCEEEEEeCHHHHHh
Confidence 67888888766 4457889999999999999999999998864
|
| >1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=4.7e-24 Score=247.99 Aligned_cols=171 Identities=15% Similarity=0.181 Sum_probs=134.7
Q ss_pred eEEeecceEEEeCCe--------------------EEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCCccccc
Q 000979 629 LVLLNGVSGAFRPGV--------------------LTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFA 688 (1202)
Q Consensus 629 ~~iL~~vs~~i~~Ge--------------------~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~ 688 (1202)
+.+|++||+++++|| ++||+||||||||||+|+|+|...+ .+|+|.++|.+.. +
T Consensus 36 ~~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~p--~~GsI~~~g~~~t----~ 109 (413)
T 1tq4_A 36 QEILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNE--EEGAAKTGVVEVT----M 109 (413)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCTT--STTSCCCCC--------C
T ss_pred HHHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCCc--cCceEEECCeecc----e
Confidence 347999999999999 9999999999999999999997653 3678888886542 1
Q ss_pred ceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHH--HHHHHHH
Q 000979 689 RISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTE--QRKRLTI 766 (1202)
Q Consensus 689 ~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgG--qrqRv~i 766 (1202)
+ ++++|++ .++.+|+.|++.++. . +..++++++.+++.+..... .|||| ||||+.|
T Consensus 110 ~--~~v~q~~-~~~~ltv~D~~g~~~----~--------~~~~~~~L~~~~L~~~~~~~-------~lS~G~~~kqrv~l 167 (413)
T 1tq4_A 110 E--RHPYKHP-NIPNVVFWDLPGIGS----T--------NFPPDTYLEKMKFYEYDFFI-------IISATRFKKNDIDI 167 (413)
T ss_dssp C--CEEEECS-SCTTEEEEECCCGGG----S--------SCCHHHHHHHTTGGGCSEEE-------EEESSCCCHHHHHH
T ss_pred e--EEecccc-ccCCeeehHhhcccc----h--------HHHHHHHHHHcCCCccCCeE-------EeCCCCccHHHHHH
Confidence 1 7899985 567889988875531 0 11257888888887653222 28999 9999999
Q ss_pred HHHHhh----------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-----hCC----CEEEEEecCCCH-HHHHhcceE
Q 000979 767 AVELVA----------NPSIIFMDEPTSGLDARAAAIVMRTVRNTV-----DTG----RTVVCTIHQPSI-DIFEAFDEL 826 (1202)
Q Consensus 767 a~aL~~----------~p~illlDEPtsgLD~~~~~~v~~~l~~~~-----~~g----~tvi~~~H~~~~-~~~~~~d~v 826 (1202)
|++|+. +|++++|||||+|||+.++..+++.|+++. +.| .++++++|+.+. ++.+++|++
T Consensus 168 a~aL~~~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I 247 (413)
T 1tq4_A 168 AKAISMMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKL 247 (413)
T ss_dssp HHHHHHTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHH
T ss_pred HHHHHhcCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCcCCccCHHHHHHHH
Confidence 999999 999999999999999999999999999884 322 678899998762 266777777
Q ss_pred E
Q 000979 827 F 827 (1202)
Q Consensus 827 ~ 827 (1202)
.
T Consensus 248 ~ 248 (413)
T 1tq4_A 248 I 248 (413)
T ss_dssp H
T ss_pred H
Confidence 5
|
| >3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A | Back alignment and structure |
|---|
Probab=99.84 E-value=3.6e-21 Score=220.49 Aligned_cols=120 Identities=22% Similarity=0.261 Sum_probs=106.7
Q ss_pred hhhhhhhhHHHHHHHHHhCCcccccccccCCcccccCccccchhhHHHHHhcCCeEeeeeCCCccccHHHHHHHHHHHHH
Q 000979 37 ATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQ 116 (1202)
Q Consensus 37 ~~~~~~~~~~v~~il~~lgL~~~~dT~VG~~~~~gLSGGQKqRvsIAraLv~~P~ILlLDEpTSGLDs~sa~~vv~~L~~ 116 (1202)
...+++.+++++++++.+||.+..|..++ +|||||||||+|||||+.+|+||+|||||||||+.++.++.+.|++
T Consensus 104 ~~~~~~~~~~v~~~l~~~~L~~~~~r~p~-----~LSGGqrQRVaiArAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~ 178 (381)
T 3rlf_A 104 GAKKEVINQRVNQVAEVLQLAHLLDRKPK-----ALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISR 178 (381)
T ss_dssp TCCHHHHHHHHHHHHHHTTCGGGTTCCGG-----GSCHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHcCCchhhcCChh-----HCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHH
Confidence 34556677889999999999998888774 7999999999999999999999999999999999999999999999
Q ss_pred HhHhCCCEEEEEecCCChHHHhhhcceEEecCCcEEEEcCcchHHH
Q 000979 117 NIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLE 162 (1202)
Q Consensus 117 ~a~~~~tTiIiaihQp~~s~~~~fD~IvvL~~G~vvy~G~~~el~~ 162 (1202)
+.++.++|+|+++| ...++.+++|+|+||++|++++.|+++++.+
T Consensus 179 l~~~~g~tii~vTH-d~~ea~~~aDri~vl~~G~i~~~g~~~~l~~ 223 (381)
T 3rlf_A 179 LHKRLGRTMIYVTH-DQVEAMTLADKIVVLDAGRVAQVGKPLELYH 223 (381)
T ss_dssp HHHHHCCEEEEECS-CHHHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred HHHhCCCEEEEEEC-CHHHHHHhCCEEEEEECCEEEEEeCHHHHHh
Confidence 87666888887766 4457889999999999999999999998864
|
| >4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=99.83 E-value=4.1e-21 Score=212.09 Aligned_cols=115 Identities=23% Similarity=0.220 Sum_probs=101.1
Q ss_pred hhhhHHHHHHHHHhCCcccccccccCCcccccCccccchhhHHHHHhc------CCeEeeeeCCCccccHHHHHHHHHHH
Q 000979 41 QEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVG------PALALFMDEISTGLDSSTTFQIVNCL 114 (1202)
Q Consensus 41 ~~~~~~v~~il~~lgL~~~~dT~VG~~~~~gLSGGQKqRvsIAraLv~------~P~ILlLDEpTSGLDs~sa~~vv~~L 114 (1202)
++.++.++++++.+||.+..|..++ .|||||||||+|||||+. +|+||+|||||||||+.++.++++.|
T Consensus 116 ~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgGq~QRv~iAraL~~~~~~~~~p~lLllDEPts~LD~~~~~~i~~~l 190 (266)
T 4g1u_C 116 SQDRQALQQVMAQTDCLALAQRDYR-----VLSGGEQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLL 190 (266)
T ss_dssp TTHHHHHHHHHHHTTCSTTTTSBGG-----GCCHHHHHHHHHHHHHHHTCCSSCCCEEEEECCCCSSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChhHhcCCcc-----cCCHHHHHHHHHHHHHhcccccCCCCCEEEEeCccccCCHHHHHHHHHHH
Confidence 4456678999999999998888774 799999999999999999 99999999999999999999999999
Q ss_pred HHHhHhCCCEEEEEecCCChHHHhhhcceEEecCCcEEEEcCcchHH
Q 000979 115 RQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVL 161 (1202)
Q Consensus 115 ~~~a~~~~tTiIiaihQp~~s~~~~fD~IvvL~~G~vvy~G~~~el~ 161 (1202)
+++.+++++|||+++|. ...+.+.+|+|++|++|++++.|+++++.
T Consensus 191 ~~l~~~~~~tvi~vtHd-l~~~~~~~d~v~vl~~G~i~~~g~~~~~~ 236 (266)
T 4g1u_C 191 RQLTRQEPLAVCCVLHD-LNLAALYADRIMLLAQGKLVACGTPEEVL 236 (266)
T ss_dssp HHHHHHSSEEEEEECSC-HHHHHHHCSEEEEEETTEEEEEECHHHHC
T ss_pred HHHHHcCCCEEEEEEcC-HHHHHHhCCEEEEEECCEEEEEcCHHHHh
Confidence 99876666677776553 34667789999999999999999998875
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.83 E-value=3.7e-21 Score=209.03 Aligned_cols=113 Identities=20% Similarity=0.207 Sum_probs=100.2
Q ss_pred hHHHHHHHHHhCCcccccccccCCcccccCccccchhhHHHHHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHhHhCCC
Q 000979 44 NVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSG 123 (1202)
Q Consensus 44 ~~~v~~il~~lgL~~~~dT~VG~~~~~gLSGGQKqRvsIAraLv~~P~ILlLDEpTSGLDs~sa~~vv~~L~~~a~~~~t 123 (1202)
++.++++++.+||.+..|..++ +||||||||++|||||+.+|++|+|||||||||+.++..+++.+++++++.++
T Consensus 104 ~~~~~~~l~~~~l~~~~~~~~~-----~LSgGqkqRv~lAral~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~~g~ 178 (240)
T 2onk_A 104 DRRVREMAEKLGIAHLLDRKPA-----RLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDV 178 (240)
T ss_dssp HHHHHHHHHTTTCTTTTTCCGG-----GSCHHHHHHHHHHHHHTTCCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHcCCHHHhcCChh-----hCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCC
Confidence 5668899999999998888774 79999999999999999999999999999999999999999999998655577
Q ss_pred EEEEEecCCChHHHhhhcceEEecCCcEEEEcCcchHHH
Q 000979 124 TAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLE 162 (1202)
Q Consensus 124 TiIiaihQp~~s~~~~fD~IvvL~~G~vvy~G~~~el~~ 162 (1202)
|||++.|.. .++.+.+|+|++|++|++++.|+++++.+
T Consensus 179 tvi~vtHd~-~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 216 (240)
T 2onk_A 179 PILHVTHDL-IEAAMLADEVAVMLNGRIVEKGKLKELFS 216 (240)
T ss_dssp CEEEEESCH-HHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred EEEEEeCCH-HHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 888776643 45778899999999999999999988763
|
| >2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* | Back alignment and structure |
|---|
Probab=99.83 E-value=6.5e-21 Score=209.71 Aligned_cols=115 Identities=20% Similarity=0.296 Sum_probs=101.4
Q ss_pred hhhhHHHHHHHHHhCCcccccccccCCcccccCccccchhhHHHHHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHhHh
Q 000979 41 QEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHI 120 (1202)
Q Consensus 41 ~~~~~~v~~il~~lgL~~~~dT~VG~~~~~gLSGGQKqRvsIAraLv~~P~ILlLDEpTSGLDs~sa~~vv~~L~~~a~~ 120 (1202)
++.++.++++++.+||.+..|..++ .|||||||||+|||||+.+|++|+|||||||||+.++..+++.++++++
T Consensus 134 ~~~~~~~~~~l~~~~L~~~~~~~~~-----~LSgGqkQRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~- 207 (263)
T 2olj_A 134 EKAEAKAMELLDKVGLKDKAHAYPD-----SLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLAN- 207 (263)
T ss_dssp HHHHHHHHHHHHHTTCGGGTTSCGG-----GSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHCCCchHhcCChh-----hCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-
Confidence 4456678999999999998888764 7999999999999999999999999999999999999999999999865
Q ss_pred CCCEEEEEecCCChHHHhhhcceEEecCCcEEEEcCcchHHH
Q 000979 121 NSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLE 162 (1202)
Q Consensus 121 ~~tTiIiaihQp~~s~~~~fD~IvvL~~G~vvy~G~~~el~~ 162 (1202)
.++|||++.|.. ..+.+.+|+|++|++|++++.|+++++.+
T Consensus 208 ~g~tvi~vtHd~-~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 248 (263)
T 2olj_A 208 EGMTMVVVTHEM-GFAREVGDRVLFMDGGYIIEEGKPEDLFD 248 (263)
T ss_dssp TTCEEEEECSCH-HHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred CCCEEEEEcCCH-HHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 478888887654 35667899999999999999999988763
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=5.8e-21 Score=207.37 Aligned_cols=115 Identities=23% Similarity=0.232 Sum_probs=98.7
Q ss_pred hhhhhHHHHHHHHHhCCccc-ccccccCCcccccCccccchhhHHHHHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHh
Q 000979 40 GQEANVITDYYLKVLGLDVC-ADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNI 118 (1202)
Q Consensus 40 ~~~~~~~v~~il~~lgL~~~-~dT~VG~~~~~gLSGGQKqRvsIAraLv~~P~ILlLDEpTSGLDs~sa~~vv~~L~~~a 118 (1202)
.++..+.++++++.+||.+. .|..+ .+|||||||||+|||||+.+|+||+|||||||||+.++..+++.++++.
T Consensus 118 ~~~~~~~~~~~l~~~~l~~~~~~~~~-----~~LSgGq~QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~ 192 (235)
T 3tif_A 118 GEERRKRALECLKMAELEERFANHKP-----NQLSGGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLN 192 (235)
T ss_dssp HHHHHHHHHHHHHHTTCCGGGTTCCG-----GGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCChhhhhCCh-----hhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHH
Confidence 44556778889999999875 36665 4799999999999999999999999999999999999999999999987
Q ss_pred HhCCCEEEEEecCCChHHHhhhcceEEecCCcEEEEcCcchHH
Q 000979 119 HINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVL 161 (1202)
Q Consensus 119 ~~~~tTiIiaihQp~~s~~~~fD~IvvL~~G~vvy~G~~~el~ 161 (1202)
++.++|||+++|.+. ..+.+|+|++|++|++++.|+.+++.
T Consensus 193 ~~~g~tvi~vtHd~~--~~~~~d~i~~l~~G~i~~~~~~~~~~ 233 (235)
T 3tif_A 193 EEDGKTVVVVTHDIN--VARFGERIIYLKDGEVEREEKLRGFD 233 (235)
T ss_dssp HHHCCEEEEECSCHH--HHTTSSEEEEEETTEEEEEEECC---
T ss_pred HHcCCEEEEEcCCHH--HHHhCCEEEEEECCEEEEEcChhhhc
Confidence 655888888877664 56899999999999999999987753
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} | Back alignment and structure |
|---|
Probab=99.83 E-value=6.8e-21 Score=217.06 Aligned_cols=118 Identities=22% Similarity=0.309 Sum_probs=104.8
Q ss_pred hhhhhhHHHHHHHHHhCCcccccccccCCcccccCccccchhhHHHHHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHh
Q 000979 39 EGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNI 118 (1202)
Q Consensus 39 ~~~~~~~~v~~il~~lgL~~~~dT~VG~~~~~gLSGGQKqRvsIAraLv~~P~ILlLDEpTSGLDs~sa~~vv~~L~~~a 118 (1202)
..++.+++++++++.+||.+..|..++ +|||||||||+|||||+.+|+||+|||||||||..++.++.+.|+++.
T Consensus 118 ~~~~~~~~v~~~l~~~gL~~~~~r~~~-----~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~ 192 (355)
T 1z47_A 118 PKDEMDARVRELLRFMRLESYANRFPH-----ELSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVH 192 (355)
T ss_dssp CHHHHHHHHHHHHHHTTCGGGTTSCGG-----GSCHHHHHHHHHHHHHTTCCSEEEEESTTCCSSHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHcCChhHhcCCcc-----cCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHH
Confidence 345566789999999999998888774 799999999999999999999999999999999999999999999987
Q ss_pred HhCCCEEEEEecCCChHHHhhhcceEEecCCcEEEEcCcchHHH
Q 000979 119 HINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLE 162 (1202)
Q Consensus 119 ~~~~tTiIiaihQp~~s~~~~fD~IvvL~~G~vvy~G~~~el~~ 162 (1202)
++.++|+|+++|.. .++..++|+|++|++|++++.|+++++.+
T Consensus 193 ~~~g~tvi~vTHd~-~~a~~~adri~vl~~G~i~~~g~~~~l~~ 235 (355)
T 1z47_A 193 DEMGVTSVFVTHDQ-EEALEVADRVLVLHEGNVEQFGTPEEVYE 235 (355)
T ss_dssp HHHTCEEEEECSCH-HHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred HhcCCEEEEECCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 65578888877643 57788999999999999999999998853
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A | Back alignment and structure |
|---|
Probab=99.83 E-value=1.1e-20 Score=203.68 Aligned_cols=109 Identities=24% Similarity=0.314 Sum_probs=97.2
Q ss_pred hhhhHHHHHHHHHhCCcccccccccCCcccccCccccchhhHHHHHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHhHh
Q 000979 41 QEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHI 120 (1202)
Q Consensus 41 ~~~~~~v~~il~~lgL~~~~dT~VG~~~~~gLSGGQKqRvsIAraLv~~P~ILlLDEpTSGLDs~sa~~vv~~L~~~a~~ 120 (1202)
++.++.++++++.+||.+..|..++ .|||||||||+|||||+.+|++|+|||||||||+.++..+.+.+++++++
T Consensus 115 ~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~ 189 (224)
T 2pcj_A 115 KEAKERGEYLLSELGLGDKLSRKPY-----ELSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFLKINEG 189 (224)
T ss_dssp HHHHHHHHHHHHHTTCTTCTTCCGG-----GSCHHHHHHHHHHHHTTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCchhhhCChh-----hCCHHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC
Confidence 3445678899999999998888774 79999999999999999999999999999999999999999999998654
Q ss_pred CCCEEEEEecCCChHHHhhhcceEEecCCcEEEEcCc
Q 000979 121 NSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPR 157 (1202)
Q Consensus 121 ~~tTiIiaihQp~~s~~~~fD~IvvL~~G~vvy~G~~ 157 (1202)
++|||++.|... ..+.+|+|++|.+|++++.|++
T Consensus 190 -g~tvi~vtHd~~--~~~~~d~v~~l~~G~i~~~g~~ 223 (224)
T 2pcj_A 190 -GTSIVMVTHERE--LAELTHRTLEMKDGKVVGEITR 223 (224)
T ss_dssp -TCEEEEECSCHH--HHTTSSEEEEEETTEEEEEEEC
T ss_pred -CCEEEEEcCCHH--HHHhCCEEEEEECCEEEEEeee
Confidence 889998888743 3489999999999999999975
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=9.2e-21 Score=208.83 Aligned_cols=112 Identities=24% Similarity=0.253 Sum_probs=100.5
Q ss_pred hhhHHHHHHHHHhCCcccccccccCCcccccCccccchhhHHHHHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHhHhC
Q 000979 42 EANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHIN 121 (1202)
Q Consensus 42 ~~~~~v~~il~~lgL~~~~dT~VG~~~~~gLSGGQKqRvsIAraLv~~P~ILlLDEpTSGLDs~sa~~vv~~L~~~a~~~ 121 (1202)
+.++.++++++.+||.+..|..++ .|||||||||+|||||+.+|+||+|||||||||+.++..+++.++++++ .
T Consensus 129 ~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~-~ 202 (257)
T 1g6h_A 129 EMVEKAFKILEFLKLSHLYDRKAG-----ELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKA-K 202 (257)
T ss_dssp HHHHHHHHHHHHTTCGGGTTSBGG-----GSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHH-T
T ss_pred HHHHHHHHHHHHcCCchhhCCCch-----hCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHH-C
Confidence 345678899999999998888774 7999999999999999999999999999999999999999999999865 4
Q ss_pred CCEEEEEecCCChHHHhhhcceEEecCCcEEEEcCcchH
Q 000979 122 SGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELV 160 (1202)
Q Consensus 122 ~tTiIiaihQp~~s~~~~fD~IvvL~~G~vvy~G~~~el 160 (1202)
++|||++.|... .+.+.+|+|++|.+|++++.|+++++
T Consensus 203 g~tvi~vtHd~~-~~~~~~d~v~~l~~G~i~~~g~~~~~ 240 (257)
T 1g6h_A 203 GITFLIIEHRLD-IVLNYIDHLYVMFNGQIIAEGRGEEE 240 (257)
T ss_dssp TCEEEEECSCCS-TTGGGCSEEEEEETTEEEEEEESHHH
T ss_pred CCEEEEEecCHH-HHHHhCCEEEEEECCEEEEEeCHHHh
Confidence 889998887654 56788999999999999999999883
|
| >1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.83 E-value=6.4e-21 Score=210.41 Aligned_cols=115 Identities=23% Similarity=0.294 Sum_probs=100.7
Q ss_pred hhhhHHHHHHHHHhCCccc-ccccccCCcccccCccccchhhHHHHHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHhH
Q 000979 41 QEANVITDYYLKVLGLDVC-ADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIH 119 (1202)
Q Consensus 41 ~~~~~~v~~il~~lgL~~~-~dT~VG~~~~~gLSGGQKqRvsIAraLv~~P~ILlLDEpTSGLDs~sa~~vv~~L~~~a~ 119 (1202)
++.++.++++++.+||.+. .|..++ .|||||||||+|||||+.+|+||+|||||||||+.++..+.+.++++++
T Consensus 127 ~~~~~~~~~~l~~~~L~~~~~~~~~~-----~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~ 201 (262)
T 1b0u_A 127 HDARERALKYLAKVGIDERAQGKYPV-----HLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAE 201 (262)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHTSCGG-----GSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCchhhcCCcc-----cCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh
Confidence 4456678999999999988 888764 7999999999999999999999999999999999999999999999865
Q ss_pred hCCCEEEEEecCCChHHHhhhcceEEecCCcEEEEcCcchHHH
Q 000979 120 INSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLE 162 (1202)
Q Consensus 120 ~~~tTiIiaihQp~~s~~~~fD~IvvL~~G~vvy~G~~~el~~ 162 (1202)
.++|||+++|.. ..+.+.+|+|++|++|++++.|+++++.+
T Consensus 202 -~g~tvi~vtHd~-~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 242 (262)
T 1b0u_A 202 -EGKTMVVVTHEM-GFARHVSSHVIFLHQGKIEEEGDPEQVFG 242 (262)
T ss_dssp -TTCCEEEECSCH-HHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred -CCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 477888776653 35667899999999999999999988763
|
| >1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A | Back alignment and structure |
|---|
Probab=99.83 E-value=1.6e-24 Score=231.92 Aligned_cols=185 Identities=12% Similarity=0.048 Sum_probs=116.7
Q ss_pred ceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCCcccccceEEEeecCCCCCCCCCHH
Q 000979 628 KLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIY 707 (1202)
Q Consensus 628 ~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~lTv~ 707 (1202)
...+++| .++++||+++|+||||||||||+|+|+|... .+.+.+.+.+.+... ..++.++|++|++..++.+|+.
T Consensus 8 ~~~~~~~--~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~--~i~~~~~~~~~~~~~-~~~~~i~~~~q~~~~~~~~~~~ 82 (207)
T 1znw_A 8 TKPTARG--QPAAVGRVVVLSGPSAVGKSTVVRCLRERIP--NLHFSVSATTRAPRP-GEVDGVDYHFIDPTRFQQLIDQ 82 (207)
T ss_dssp -------------CCCEEEEECSTTSSHHHHHHHHHHHST--TCEECCCEESSCCCT-TCCBTTTBEECCHHHHHHHHHT
T ss_pred CCcCCCC--CCCCCCCEEEEECCCCCCHHHHHHHHHhhCC--ceEEcccccccCCcc-cccCCCeeEecCHHHHHHHHhc
Confidence 4557888 6999999999999999999999999999764 223333333332211 2345689999998777777777
Q ss_pred HHHHHHHHccC---CCCCCHHHHHHHHHHH------HHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEE
Q 000979 708 ESLLFSAWLRL---SPEVDSETRKMFIDEV------MELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIF 778 (1202)
Q Consensus 708 e~l~~~~~~~~---~~~~~~~~~~~~~~~~------l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~ill 778 (1202)
|++........ ....+.++.++++++. ++.+|+.+..+.. .+.|| +|+.+|++++
T Consensus 83 ~~l~~~~~~~~n~~~~g~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~-----~~~lS-----------~l~~~p~~~~ 146 (207)
T 1znw_A 83 GELLEWAEIHGGLHRSGTLAQPVRAAAATGVPVLIEVDLAGARAIKKTM-----PEAVT-----------VFLAPPSWQD 146 (207)
T ss_dssp TCEEEEEEEGGGTEEEEEEHHHHHHHHHHTCCEEEECCHHHHHHHHHHC-----TTSEE-----------EEEECSCHHH
T ss_pred CCceeehhhcCchhhcCCcHHHHHHHHHcCCeEEEEeCHHHHHHHHHhc-----CCcEE-----------EEEECCCHHH
Confidence 76532110100 0012233333444444 3344444333333 23466 8999999999
Q ss_pred EeCCCCCC----CHHHHHHHHHHHHHHHh-CCCEEEEEecCCCHHHHHhcceEEEEecCCE
Q 000979 779 MDEPTSGL----DARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKRGGQ 834 (1202)
Q Consensus 779 lDEPtsgL----D~~~~~~v~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~ 834 (1202)
|||||+|+ |+..+..+.+.++++.+ .|.|+|++||+++ ++.+.|||+++|.+.|+
T Consensus 147 LDep~~~l~~~~d~~~~~~l~~~l~~l~~~~g~tvi~vtHdl~-~~~~~~d~i~~l~~p~~ 206 (207)
T 1znw_A 147 LQARLIGRGTETADVIQRRLDTARIELAAQGDFDKVVVNRRLE-SACAELVSLLVGTAPGS 206 (207)
T ss_dssp HHHHHHTTSCSCHHHHHHHHHHHHHHHHGGGGSSEEEECSSHH-HHHHHHHHHHC------
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHhhhccCcEEEECCCHH-HHHHHHHHHHHhccCCC
Confidence 99999998 78899999999999974 4899999999986 68899999999965443
|
| >2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.83 E-value=8.5e-21 Score=217.11 Aligned_cols=118 Identities=22% Similarity=0.259 Sum_probs=104.5
Q ss_pred hhhhhhHHHHHHHHHhCCcccccccccCCcccccCccccchhhHHHHHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHh
Q 000979 39 EGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNI 118 (1202)
Q Consensus 39 ~~~~~~~~v~~il~~lgL~~~~dT~VG~~~~~gLSGGQKqRvsIAraLv~~P~ILlLDEpTSGLDs~sa~~vv~~L~~~a 118 (1202)
..++.+++++++++.+||.+..|..++ +|||||||||+|||||+.+|+||+|||||||||+.++.++.+.|+++.
T Consensus 106 ~~~~~~~~v~~~l~~~~L~~~~~r~~~-----~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~ 180 (362)
T 2it1_A 106 PREEIDKKVREVAKMLHIDKLLNRYPW-----QLSGGQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQ 180 (362)
T ss_dssp CHHHHHHHHHHHHHHTTCTTCTTCCGG-----GSCHHHHHHHHHHHHHTTCCSEEEEESGGGGSCHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHcCCchHhhCChh-----hCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHH
Confidence 345556788999999999998888774 799999999999999999999999999999999999999999999987
Q ss_pred HhCCCEEEEEecCCChHHHhhhcceEEecCCcEEEEcCcchHHH
Q 000979 119 HINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLE 162 (1202)
Q Consensus 119 ~~~~tTiIiaihQp~~s~~~~fD~IvvL~~G~vvy~G~~~el~~ 162 (1202)
++.++|+|+++|.. .++.+++|+|++|++|++++.|+++++.+
T Consensus 181 ~~~g~tvi~vTHd~-~~a~~~adri~vl~~G~i~~~g~~~~~~~ 223 (362)
T 2it1_A 181 KELGITTVYVTHDQ-AEALAMADRIAVIREGEILQVGTPDEVYY 223 (362)
T ss_dssp HHHTCEEEEEESCH-HHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred HhCCCEEEEECCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 65578888876644 47789999999999999999999998864
|
| >2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=99.82 E-value=9.7e-21 Score=216.39 Aligned_cols=117 Identities=21% Similarity=0.234 Sum_probs=104.1
Q ss_pred hhhhhHHHHHHHHHhCCcccccccccCCcccccCccccchhhHHHHHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHhH
Q 000979 40 GQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIH 119 (1202)
Q Consensus 40 ~~~~~~~v~~il~~lgL~~~~dT~VG~~~~~gLSGGQKqRvsIAraLv~~P~ILlLDEpTSGLDs~sa~~vv~~L~~~a~ 119 (1202)
+++.+++++++++.+||.+..|..++ +|||||||||+|||||+.+|+||+|||||||||+.++.++.+.|+++.+
T Consensus 107 ~~~~~~~v~~~l~~~~L~~~~~r~~~-----~LSgGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~ 181 (359)
T 2yyz_A 107 KDEVEKRVVEIARKLLIDNLLDRKPT-----QLSGGQQQRVALARALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQ 181 (359)
T ss_dssp HHHTTHHHHHHHHHTTCGGGTTSCGG-----GSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCchHhcCChh-----hCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHH
Confidence 34556778999999999998888774 7999999999999999999999999999999999999999999999876
Q ss_pred hCCCEEEEEecCCChHHHhhhcceEEecCCcEEEEcCcchHHH
Q 000979 120 INSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLE 162 (1202)
Q Consensus 120 ~~~tTiIiaihQp~~s~~~~fD~IvvL~~G~vvy~G~~~el~~ 162 (1202)
+.++|+|+++|.. .++..++|+|++|++|++++.|+++++.+
T Consensus 182 ~~g~tvi~vTHd~-~~~~~~adri~vl~~G~i~~~g~~~~l~~ 223 (359)
T 2yyz_A 182 ELGITSVYVTHDQ-AEAMTMASRIAVFNQGKLVQYGTPDEVYD 223 (359)
T ss_dssp HHCCEEEEEESCH-HHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred hcCCEEEEEcCCH-HHHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 5578888877654 46788999999999999999999998864
|
| >1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=99.82 E-value=1.4e-21 Score=202.79 Aligned_cols=150 Identities=17% Similarity=0.126 Sum_probs=98.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCCcccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCC
Q 000979 644 LTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVD 723 (1202)
Q Consensus 644 ~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~ 723 (1202)
.++|+||||||||||+++|+|...- ...|... .+......++.+||++|+. ++.+++ + +.+. ..
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~i-~~~g~~~---~~~~~~~~~~~ig~~~~~~------~~~~~~-~-~~~~----~~ 65 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLGK-RAIGFWT---EEVRDPETKKRTGFRIITT------EGKKKI-F-SSKF----FT 65 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGG-GEEEEEE---EEEC------CCEEEEEET------TCCEEE-E-EETT----CC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC-cCCCEEh---hhhccccccceeEEEeecC------cHHHHH-H-Hhhc----CC
Confidence 5899999999999999999996531 2233211 1111012356789999975 222332 0 0000 00
Q ss_pred HHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHH-----HhhCCCEEEEeC--CCCCCCHHHHHHHHH
Q 000979 724 SETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVE-----LVANPSIIFMDE--PTSGLDARAAAIVMR 796 (1202)
Q Consensus 724 ~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~a-----L~~~p~illlDE--PtsgLD~~~~~~v~~ 796 (1202)
-.+..+.. +..||||||||++||++ |+.+|++|+||| ||++||+.....+.+
T Consensus 66 ----------------~~~~~~~~-----~~~lSgG~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~~~~l~~ 124 (178)
T 1ye8_A 66 ----------------SKKLVGSY-----GVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQ 124 (178)
T ss_dssp ----------------CSSEETTE-----EECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHH
T ss_pred ----------------cccccccc-----ccCcCHHHHHHHHHHhhccccccccCCCEEEEeCCCCcccCCHHHHHHHHH
Confidence 00112222 24699999999999996 999999999999 999999999999988
Q ss_pred HHHHHHhCCCEEEEEec--CCCHHHHHhcceEEEEecCCEEEEE
Q 000979 797 TVRNTVDTGRTVVCTIH--QPSIDIFEAFDELFLMKRGGQEIYV 838 (1202)
Q Consensus 797 ~l~~~~~~g~tvi~~~H--~~~~~~~~~~d~v~~l~~gG~~~~~ 838 (1202)
.+++ .+.|+|+++| +....+...+|| .+|+++..
T Consensus 125 ~l~~---~~~~~i~~~H~~h~~~~~~~i~~r-----~~~~i~~~ 160 (178)
T 1ye8_A 125 IMHD---PNVNVVATIPIRDVHPLVKEIRRL-----PGAVLIEL 160 (178)
T ss_dssp HHTC---TTSEEEEECCSSCCSHHHHHHHTC-----TTCEEEEC
T ss_pred HHhc---CCCeEEEEEccCCCchHHHHHHhc-----CCcEEEEe
Confidence 8865 4778999997 223356667787 34666553
|
| >1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A | Back alignment and structure |
|---|
Probab=99.82 E-value=1.2e-20 Score=217.35 Aligned_cols=118 Identities=22% Similarity=0.273 Sum_probs=104.7
Q ss_pred hhhhhhHHHHHHHHHhCCcccccccccCCcccccCccccchhhHHHHHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHh
Q 000979 39 EGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNI 118 (1202)
Q Consensus 39 ~~~~~~~~v~~il~~lgL~~~~dT~VG~~~~~gLSGGQKqRvsIAraLv~~P~ILlLDEpTSGLDs~sa~~vv~~L~~~a 118 (1202)
.+++.+++++++++.+||.+..|..++ +|||||||||+|||||+.+|+||+|||||||||+.++.++.+.|+++.
T Consensus 112 ~~~~~~~~v~~~l~~~~L~~~~~r~~~-----~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~ 186 (372)
T 1g29_1 112 PRQEIDQRVREVAELLGLTELLNRKPR-----ELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQ 186 (372)
T ss_dssp CHHHHHHHHHHHHHHHTCGGGTTCCGG-----GSCHHHHHHHHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHCCCchHhcCCcc-----cCCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHH
Confidence 345566788999999999998888774 799999999999999999999999999999999999999999999987
Q ss_pred HhCCCEEEEEecCCChHHHhhhcceEEecCCcEEEEcCcchHHH
Q 000979 119 HINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLE 162 (1202)
Q Consensus 119 ~~~~tTiIiaihQp~~s~~~~fD~IvvL~~G~vvy~G~~~el~~ 162 (1202)
++.++|+|+++|.. .++..++|+|++|++|++++.|+++++.+
T Consensus 187 ~~~g~tvi~vTHd~-~~a~~~adri~vl~~G~i~~~g~~~~l~~ 229 (372)
T 1g29_1 187 RQLGVTTIYVTHDQ-VEAMTMGDRIAVMNRGVLQQVGSPDEVYD 229 (372)
T ss_dssp HHHTCEEEEEESCH-HHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred HhcCCEEEEECCCH-HHHHHhCCEEEEEeCCEEEEeCCHHHHHh
Confidence 65578888877754 57788999999999999999999998864
|
| >1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=1.5e-20 Score=215.82 Aligned_cols=117 Identities=20% Similarity=0.244 Sum_probs=104.0
Q ss_pred hhhhhHHHHHHHHHhCCcccccccccCCcccccCccccchhhHHHHHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHhH
Q 000979 40 GQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIH 119 (1202)
Q Consensus 40 ~~~~~~~v~~il~~lgL~~~~dT~VG~~~~~gLSGGQKqRvsIAraLv~~P~ILlLDEpTSGLDs~sa~~vv~~L~~~a~ 119 (1202)
+++.+++++++++.+||.+..|..++ +|||||||||+|||||+.+|+||+|||||||||+.++.++.+.|+++.+
T Consensus 115 ~~~~~~~v~~~l~~~~L~~~~~r~~~-----~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~ 189 (372)
T 1v43_A 115 KDEIDKRVRWAAELLQIEELLNRYPA-----QLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQ 189 (372)
T ss_dssp HHHHHHHHHHHHHHTTCGGGTTSCTT-----TCCSSCHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCChhHhcCChh-----hCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHH
Confidence 34556778999999999998888774 7999999999999999999999999999999999999999999999876
Q ss_pred hCCCEEEEEecCCChHHHhhhcceEEecCCcEEEEcCcchHHH
Q 000979 120 INSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLE 162 (1202)
Q Consensus 120 ~~~tTiIiaihQp~~s~~~~fD~IvvL~~G~vvy~G~~~el~~ 162 (1202)
+.++|+|+++|.. .++.+++|+|++|++|++++.|+++++..
T Consensus 190 ~~g~tvi~vTHd~-~~a~~~adri~vl~~G~i~~~g~~~~l~~ 231 (372)
T 1v43_A 190 KLKVTTIYVTHDQ-VEAMTMGDRIAVMNRGQLLQIGSPTEVYL 231 (372)
T ss_dssp HHTCEEEEEESCH-HHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred hCCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 5578888876643 47789999999999999999999998864
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=1e-20 Score=216.50 Aligned_cols=117 Identities=19% Similarity=0.251 Sum_probs=104.2
Q ss_pred hhhhhHHHHHHHHHhCCcccccccccCCcccccCccccchhhHHHHHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHhH
Q 000979 40 GQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIH 119 (1202)
Q Consensus 40 ~~~~~~~v~~il~~lgL~~~~dT~VG~~~~~gLSGGQKqRvsIAraLv~~P~ILlLDEpTSGLDs~sa~~vv~~L~~~a~ 119 (1202)
.++.+++++++++.+||.+..|..++ +|||||||||+|||||+.+|+||+|||||||||+.++.++.+.|+++.+
T Consensus 114 ~~~~~~~v~~~l~~~~L~~~~~~~~~-----~LSGGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~ 188 (353)
T 1oxx_K 114 KEEIRKRVEEVAKILDIHHVLNHFPR-----ELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQS 188 (353)
T ss_dssp HHHHHHHHHHHHHHTTCGGGTTSCGG-----GSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCchHhcCChh-----hCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHH
Confidence 34556778999999999998888774 7999999999999999999999999999999999999999999999876
Q ss_pred hCCCEEEEEecCCChHHHhhhcceEEecCCcEEEEcCcchHHH
Q 000979 120 INSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLE 162 (1202)
Q Consensus 120 ~~~tTiIiaihQp~~s~~~~fD~IvvL~~G~vvy~G~~~el~~ 162 (1202)
+.++|+|+++|.. .++.+++|+|++|++|++++.|+++++.+
T Consensus 189 ~~g~tvi~vTHd~-~~~~~~adri~vl~~G~i~~~g~~~~l~~ 230 (353)
T 1oxx_K 189 RLGVTLLVVSHDP-ADIFAIADRVGVLVKGKLVQVGKPEDLYD 230 (353)
T ss_dssp HHCCEEEEEESCH-HHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred hcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 5678888877754 47888999999999999999999998863
|
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.82 E-value=1.7e-20 Score=205.80 Aligned_cols=114 Identities=23% Similarity=0.249 Sum_probs=100.1
Q ss_pred hhhHHHHHHHHHhCCcccccccccCCcccccCccccchhhHHHHHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHhHhC
Q 000979 42 EANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHIN 121 (1202)
Q Consensus 42 ~~~~~v~~il~~lgL~~~~dT~VG~~~~~gLSGGQKqRvsIAraLv~~P~ILlLDEpTSGLDs~sa~~vv~~L~~~a~~~ 121 (1202)
+.++.++++++.+||.+..|..++ .|||||||||+|||||+.+|+||+|||||||||+.++..+++.|+++.. .
T Consensus 122 ~~~~~~~~~l~~~gL~~~~~~~~~-----~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~-~ 195 (256)
T 1vpl_A 122 EIEEMVERATEIAGLGEKIKDRVS-----TYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQ-E 195 (256)
T ss_dssp HHHHHHHHHHHHHCCGGGGGSBGG-----GCCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHH-T
T ss_pred HHHHHHHHHHHHCCCchHhcCChh-----hCCHHHHHHHHHHHHHHcCCCEEEEeCCccccCHHHHHHHHHHHHHHHh-C
Confidence 345668899999999998888764 7999999999999999999999999999999999999999999999764 5
Q ss_pred CCEEEEEecCCChHHHhhhcceEEecCCcEEEEcCcchHHH
Q 000979 122 SGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLE 162 (1202)
Q Consensus 122 ~tTiIiaihQp~~s~~~~fD~IvvL~~G~vvy~G~~~el~~ 162 (1202)
++|||++.|.+ ..+.+.+|++++|.+|++++.|+++++.+
T Consensus 196 g~tiiivtHd~-~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 235 (256)
T 1vpl_A 196 GLTILVSSHNM-LEVEFLCDRIALIHNGTIVETGTVEELKE 235 (256)
T ss_dssp TCEEEEEECCH-HHHTTTCSEEEEEETTEEEEEEEHHHHHH
T ss_pred CCEEEEEcCCH-HHHHHHCCEEEEEECCEEEEecCHHHHHH
Confidence 78888877654 34556799999999999999999988865
|
| >3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=99.81 E-value=1.7e-20 Score=231.08 Aligned_cols=103 Identities=27% Similarity=0.365 Sum_probs=92.3
Q ss_pred CCcccccccccCCcccccCccccchhhHHHHHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHhHhCCCEEEEEecCCCh
Q 000979 55 GLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAP 134 (1202)
Q Consensus 55 gL~~~~dT~VG~~~~~gLSGGQKqRvsIAraLv~~P~ILlLDEpTSGLDs~sa~~vv~~L~~~a~~~~tTiIiaihQp~~ 134 (1202)
.|++..||.+| +.+..|||||||||+|||||+++|+||+|||||||||+.++..+++.+++.. +++|++++| |+.
T Consensus 464 ~l~~g~~~~~~-~~~~~LSgGqrQrv~lARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~it---H~l 538 (587)
T 3qf4_A 464 SLPEGYDSRVE-RGGRNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYT-KGCTTFIIT---QKI 538 (587)
T ss_dssp TSSSGGGCEEC-SSSCSSCHHHHHHHHHHHHHHTCCSEEEEESCCTTSCHHHHHHHHHHHHHHS-TTCEEEEEE---SCH
T ss_pred hcccchhhHhc-CCCCCcCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHhC-CCCEEEEEe---cCh
Confidence 46678999998 6778899999999999999999999999999999999999999999999864 344555566 677
Q ss_pred HHHhhhcceEEecCCcEEEEcCcchHHH
Q 000979 135 ETYDLFDDIILLSDGQIVYQGPRELVLE 162 (1202)
Q Consensus 135 s~~~~fD~IvvL~~G~vvy~G~~~el~~ 162 (1202)
++.+.+|+|++|++|+++++|+|+|+++
T Consensus 539 ~~~~~~d~i~vl~~G~i~~~g~~~el~~ 566 (587)
T 3qf4_A 539 PTALLADKILVLHEGKVAGFGTHKELLE 566 (587)
T ss_dssp HHHTTSSEEEEEETTEEEEEECHHHHHH
T ss_pred HHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 8889999999999999999999999985
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A | Back alignment and structure |
|---|
Probab=99.81 E-value=1.6e-20 Score=231.42 Aligned_cols=103 Identities=27% Similarity=0.347 Sum_probs=90.5
Q ss_pred CCcccccccccCCcccccCccccchhhHHHHHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHhHhCCCEEEEEecCCCh
Q 000979 55 GLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAP 134 (1202)
Q Consensus 55 gL~~~~dT~VG~~~~~gLSGGQKqRvsIAraLv~~P~ILlLDEpTSGLDs~sa~~vv~~L~~~a~~~~tTiIiaihQp~~ 134 (1202)
.|++..||.+| +++..|||||||||+|||||+++|+||+|||||||||+.++..+.+.+++.. + ++|+|+.. |+.
T Consensus 462 ~lp~g~~t~~~-~~g~~LSgGq~Qrv~lAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~-~~t~i~it--H~l 536 (578)
T 4a82_A 462 NLPQGYDTEVG-ERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLS-K-DRTTLIVA--HRL 536 (578)
T ss_dssp TSTTGGGCBCC-GGGTTSCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHT-T-TSEEEEEC--SSG
T ss_pred hCcchhhhhhc-cCCCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHc-C-CCEEEEEe--cCH
Confidence 45678999998 6778899999999999999999999999999999999999999999998864 3 45555543 556
Q ss_pred HHHhhhcceEEecCCcEEEEcCcchHHH
Q 000979 135 ETYDLFDDIILLSDGQIVYQGPRELVLE 162 (1202)
Q Consensus 135 s~~~~fD~IvvL~~G~vvy~G~~~el~~ 162 (1202)
++.+.+|+|++|++|+++++|+|+|+++
T Consensus 537 ~~~~~~d~i~~l~~G~i~~~g~~~el~~ 564 (578)
T 4a82_A 537 STITHADKIVVIENGHIVETGTHRELIA 564 (578)
T ss_dssp GGTTTCSEEEEEETTEEEEEECHHHHHH
T ss_pred HHHHcCCEEEEEECCEEEEECCHHHHHh
Confidence 6788999999999999999999999985
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 | Back alignment and structure |
|---|
Probab=99.81 E-value=2.8e-20 Score=211.92 Aligned_cols=111 Identities=22% Similarity=0.197 Sum_probs=101.0
Q ss_pred HHHHHHHHHhCCcccccccccCCcccccCccccchhhHHHHHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHhHhCCCE
Q 000979 45 VITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGT 124 (1202)
Q Consensus 45 ~~v~~il~~lgL~~~~dT~VG~~~~~gLSGGQKqRvsIAraLv~~P~ILlLDEpTSGLDs~sa~~vv~~L~~~a~~~~tT 124 (1202)
++++++++.+||++..|..++ +|||||||||+|||||+.+|++|+|||||||||+.++.++.+.|+++.++.++|
T Consensus 106 ~~v~~~l~~~~L~~~~~~~~~-----~LSgGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~~~~l~~~l~~l~~~~g~t 180 (348)
T 3d31_A 106 KRVLDTARDLKIEHLLDRNPL-----TLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLT 180 (348)
T ss_dssp HHHHHHHHHTTCTTTTTSCGG-----GSCHHHHHHHHHHHHTTSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCE
T ss_pred HHHHHHHHHcCCchHhcCChh-----hCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhcCCE
Confidence 678999999999998888774 799999999999999999999999999999999999999999999987666788
Q ss_pred EEEEecCCChHHHhhhcceEEecCCcEEEEcCcchHH
Q 000979 125 AVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVL 161 (1202)
Q Consensus 125 iIiaihQp~~s~~~~fD~IvvL~~G~vvy~G~~~el~ 161 (1202)
+|+++|.. .++.+++|+|++|++|++++.|+++++.
T Consensus 181 ii~vTHd~-~~~~~~adri~vl~~G~i~~~g~~~~~~ 216 (348)
T 3d31_A 181 VLHITHDQ-TEARIMADRIAVVMDGKLIQVGKPEEIF 216 (348)
T ss_dssp EEEEESCH-HHHHHHCSEEEEESSSCEEEEECHHHHH
T ss_pred EEEEeCCH-HHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 88877644 5788999999999999999999998885
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} | Back alignment and structure |
|---|
Probab=99.81 E-value=2.4e-20 Score=230.26 Aligned_cols=114 Identities=23% Similarity=0.317 Sum_probs=98.1
Q ss_pred hHHHHHHHHHhCCc-------ccccccccCCcccccCccccchhhHHHHHhcCCeEeeeeCCCccccHHHHHHHHHHHHH
Q 000979 44 NVITDYYLKVLGLD-------VCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQ 116 (1202)
Q Consensus 44 ~~~v~~il~~lgL~-------~~~dT~VG~~~~~gLSGGQKqRvsIAraLv~~P~ILlLDEpTSGLDs~sa~~vv~~L~~ 116 (1202)
++.+++.++..||. +..||.+| +.+..||||||||++|||||+++|+||+|||||||||+.++..+.+.+++
T Consensus 447 ~~~~~~~~~~~~l~~~~~~~p~g~~t~~~-~~~~~LSgGq~qr~~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~ 525 (582)
T 3b5x_A 447 REQIEQAARQAHAMEFIENMPQGLDTVIG-ENGTSLSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDE 525 (582)
T ss_pred HHHHHHHHHHCCCHHHHHhCcccccchhc-CCCCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHH
Confidence 44567788887775 46889998 66788999999999999999999999999999999999999999999998
Q ss_pred HhHhCCCEEEEEecCCChHHHhhhcceEEecCCcEEEEcCcchHHH
Q 000979 117 NIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLE 162 (1202)
Q Consensus 117 ~a~~~~tTiIiaihQp~~s~~~~fD~IvvL~~G~vvy~G~~~el~~ 162 (1202)
.. + ++|+|+.. |+.++.+.+|+|++|++|++++.|+|+|+.+
T Consensus 526 ~~-~-~~tvi~it--H~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 567 (582)
T 3b5x_A 526 LQ-K-NKTVLVIA--HRLSTIEQADEILVVDEGEIIERGRHADLLA 567 (582)
T ss_pred Hc-C-CCEEEEEe--cCHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 74 3 55555544 5567788999999999999999999999974
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=99.81 E-value=3.4e-20 Score=203.33 Aligned_cols=113 Identities=19% Similarity=0.240 Sum_probs=98.7
Q ss_pred hhhHHHHHHHHHhCCcccccccccCCcccccCccccchhhHHHHHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHhHhC
Q 000979 42 EANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHIN 121 (1202)
Q Consensus 42 ~~~~~v~~il~~lgL~~~~dT~VG~~~~~gLSGGQKqRvsIAraLv~~P~ILlLDEpTSGLDs~sa~~vv~~L~~~a~~~ 121 (1202)
+.++.++++++.+||.+..|..++ .|||||||||+|||||+.+|+||+|||||||||..++..+.+.++++.++.
T Consensus 104 ~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgGq~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~~ 178 (253)
T 2nq2_C 104 HDYQVAMQALDYLNLTHLAKREFT-----SLSGGQRQLILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQ 178 (253)
T ss_dssp HHHHHHHHHHHHTTCGGGTTSBGG-----GSCHHHHHHHHHHHHHHTTCSEEEESSSSTTSCHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHcCChHHhcCChh-----hCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhc
Confidence 335668899999999998887764 799999999999999999999999999999999999999999999986544
Q ss_pred CCEEEEEecCCChHHHhhhcceEEecCCcEEEEcCcchHH
Q 000979 122 SGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVL 161 (1202)
Q Consensus 122 ~tTiIiaihQp~~s~~~~fD~IvvL~~G~vvy~G~~~el~ 161 (1202)
++|||++.|.+ ..+.+.+|+|++|++|+ ++.|+++++.
T Consensus 179 g~tvi~vtHd~-~~~~~~~d~v~~l~~G~-~~~g~~~~~~ 216 (253)
T 2nq2_C 179 NMTVVFTTHQP-NQVVAIANKTLLLNKQN-FKFGETRNIL 216 (253)
T ss_dssp CCEEEEEESCH-HHHHHHCSEEEEEETTE-EEEEEHHHHC
T ss_pred CCEEEEEecCH-HHHHHhCCEEEEEeCCe-EecCCHHHHh
Confidence 78888877654 35668899999999999 9999988764
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=99.81 E-value=3.2e-20 Score=205.43 Aligned_cols=114 Identities=23% Similarity=0.358 Sum_probs=101.4
Q ss_pred hhhHHHHHHHHHhCCc--ccccccccCCcccccCccccchhhHHHHHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHhH
Q 000979 42 EANVITDYYLKVLGLD--VCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIH 119 (1202)
Q Consensus 42 ~~~~~v~~il~~lgL~--~~~dT~VG~~~~~gLSGGQKqRvsIAraLv~~P~ILlLDEpTSGLDs~sa~~vv~~L~~~a~ 119 (1202)
+.++.++++++.+||. +..|..++ .|||||||||+|||||+.+|+||+|||||||||+.++..+++.|+++.+
T Consensus 112 ~~~~~~~~~l~~~gl~~~~~~~~~~~-----~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~ 186 (266)
T 2yz2_A 112 DPVPLVKKAMEFVGLDFDSFKDRVPF-----FLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKT 186 (266)
T ss_dssp CSHHHHHHHHHHTTCCHHHHTTCCGG-----GSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCcCCcccccCChh-----hCCHHHHHHHHHHHHHHcCCCEEEEcCccccCCHHHHHHHHHHHHHHHH
Confidence 4456788999999999 88888774 7999999999999999999999999999999999999999999999865
Q ss_pred hCCCEEEEEecCCChHHHhhhcceEEecCCcEEEEcCcchHHH
Q 000979 120 INSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLE 162 (1202)
Q Consensus 120 ~~~tTiIiaihQp~~s~~~~fD~IvvL~~G~vvy~G~~~el~~ 162 (1202)
+ ++|||++.|.+. .+.+.+|+|++|++|++++.|+++++.+
T Consensus 187 ~-g~tii~vtHd~~-~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 227 (266)
T 2yz2_A 187 L-GKTVILISHDIE-TVINHVDRVVVLEKGKKVFDGTRMEFLE 227 (266)
T ss_dssp T-TCEEEEECSCCT-TTGGGCSEEEEEETTEEEEEEEHHHHHH
T ss_pred c-CCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 4 889998888665 4567899999999999999999988864
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.81 E-value=2.1e-20 Score=203.75 Aligned_cols=113 Identities=19% Similarity=0.270 Sum_probs=98.2
Q ss_pred hhhHHHHHHHHHhC-CcccccccccCCcccccCccccchhhHHHHHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHhHh
Q 000979 42 EANVITDYYLKVLG-LDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHI 120 (1202)
Q Consensus 42 ~~~~~v~~il~~lg-L~~~~dT~VG~~~~~gLSGGQKqRvsIAraLv~~P~ILlLDEpTSGLDs~sa~~vv~~L~~~a~~ 120 (1202)
+.++.++++++.++ |.+..|..++ .|||||||||+|||||+.+|+||+|||||||||+.++..+++.|+++++
T Consensus 114 ~~~~~~~~~l~~~~~l~~~~~~~~~-----~LSgGq~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~- 187 (240)
T 1ji0_A 114 GIKRDLEWIFSLFPRLKERLKQLGG-----TLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQ- 187 (240)
T ss_dssp HHHHHHHHHHHHCHHHHTTTTSBSS-----SSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHcccHhhHhcCChh-----hCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH-
Confidence 44566788999994 9888777764 7999999999999999999999999999999999999999999999865
Q ss_pred CCCEEEEEecCCChHHHhhhcceEEecCCcEEEEcCcchHH
Q 000979 121 NSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVL 161 (1202)
Q Consensus 121 ~~tTiIiaihQp~~s~~~~fD~IvvL~~G~vvy~G~~~el~ 161 (1202)
.++|||++.|.+ .++.+.+|+|++|++|++++.|+++++.
T Consensus 188 ~g~tvi~vtHd~-~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 227 (240)
T 1ji0_A 188 EGTTILLVEQNA-LGALKVAHYGYVLETGQIVLEGKASELL 227 (240)
T ss_dssp TTCCEEEEESCH-HHHHHHCSEEEEEETTEEEEEEEHHHHH
T ss_pred CCCEEEEEecCH-HHHHHhCCEEEEEECCEEEEEcCHHHHh
Confidence 577777776654 3677899999999999999999988875
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A | Back alignment and structure |
|---|
Probab=99.81 E-value=2e-20 Score=230.93 Aligned_cols=114 Identities=23% Similarity=0.302 Sum_probs=98.8
Q ss_pred hHHHHHHHHHhCCc-------ccccccccCCcccccCccccchhhHHHHHhcCCeEeeeeCCCccccHHHHHHHHHHHHH
Q 000979 44 NVITDYYLKVLGLD-------VCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQ 116 (1202)
Q Consensus 44 ~~~v~~il~~lgL~-------~~~dT~VG~~~~~gLSGGQKqRvsIAraLv~~P~ILlLDEpTSGLDs~sa~~vv~~L~~ 116 (1202)
++.+++.++..||. +..||.+| +.+..|||||||||+|||||+++|+||+|||||||||+.++..+++.+++
T Consensus 447 ~~~~~~~l~~~~l~~~~~~~p~g~~~~~~-~~~~~LSgGq~qrl~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~ 525 (582)
T 3b60_A 447 REQIEEAARMAYAMDFINKMDNGLDTIIG-ENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDE 525 (582)
T ss_dssp HHHHHHHHHTTTCHHHHHHSTTGGGSBCC-TTSCSSCHHHHHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHhcccccccccc-CCCCCCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHH
Confidence 44567788888775 47899998 66788999999999999999999999999999999999999999999998
Q ss_pred HhHhCCCEEEEEecCCChHHHhhhcceEEecCCcEEEEcCcchHHH
Q 000979 117 NIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLE 162 (1202)
Q Consensus 117 ~a~~~~tTiIiaihQp~~s~~~~fD~IvvL~~G~vvy~G~~~el~~ 162 (1202)
.. +++|+|+..| +.++.+.+|+|++|++|++++.|+|+|+++
T Consensus 526 ~~--~~~tvi~itH--~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 567 (582)
T 3b60_A 526 LQ--KNRTSLVIAH--RLSTIEQADEIVVVEDGIIVERGTHSELLA 567 (582)
T ss_dssp HH--TTSEEEEECS--CGGGTTTCSEEEEEETTEEEEEECHHHHHH
T ss_pred Hh--CCCEEEEEec--cHHHHHhCCEEEEEECCEEEEecCHHHHHH
Confidence 75 3566666555 456778999999999999999999999975
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.81 E-value=2.3e-20 Score=207.38 Aligned_cols=113 Identities=28% Similarity=0.360 Sum_probs=98.7
Q ss_pred hhhHHHHHHHHHhCCcccccccccCCcccccCccccchhhHHHHHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHhHhC
Q 000979 42 EANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHIN 121 (1202)
Q Consensus 42 ~~~~~v~~il~~lgL~~~~dT~VG~~~~~gLSGGQKqRvsIAraLv~~P~ILlLDEpTSGLDs~sa~~vv~~L~~~a~~~ 121 (1202)
+.++.++++++.+||.+..|..++ .|||||||||+|||||+.+|+||+|||||||||..++..+++.|+++..+
T Consensus 137 ~~~~~~~~~l~~~gl~~~~~~~~~-----~LSgGqkqRv~lAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~- 210 (279)
T 2ihy_A 137 EIRNEAHQLLKLVGMSAKAQQYIG-----YLSTGEKQRVMIARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDS- 210 (279)
T ss_dssp HHHHHHHHHHHHTTCGGGTTSBGG-----GSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHcCChhHhcCChh-----hCCHHHHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHHHC-
Confidence 345668889999999998888774 79999999999999999999999999999999999999999999998654
Q ss_pred CCEE--EEEecCCChHHHhhhcceEEecCCcEEEEcCcchHH
Q 000979 122 SGTA--VISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVL 161 (1202)
Q Consensus 122 ~tTi--IiaihQp~~s~~~~fD~IvvL~~G~vvy~G~~~el~ 161 (1202)
++|| |++.|.. ..+.+.+|+|++|++|++++.|+++++.
T Consensus 211 g~tv~~iivtHd~-~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 251 (279)
T 2ihy_A 211 YPTLAMIYVTHFI-EEITANFSKILLLKDGQSIQQGAVEDIL 251 (279)
T ss_dssp CTTCEEEEEESCG-GGCCTTCCEEEEEETTEEEEEEEHHHHC
T ss_pred CCEEEEEEEecCH-HHHHHhCCEEEEEECCEEEEECCHHHHh
Confidence 6777 7666654 3566889999999999999999988764
|
| >2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A | Back alignment and structure |
|---|
Probab=99.80 E-value=6.1e-20 Score=203.11 Aligned_cols=121 Identities=21% Similarity=0.219 Sum_probs=100.4
Q ss_pred hhhHHHHHHHHHhCCc-ccccccccCCcccccCccccchhhHHHHHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHhHh
Q 000979 42 EANVITDYYLKVLGLD-VCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHI 120 (1202)
Q Consensus 42 ~~~~~v~~il~~lgL~-~~~dT~VG~~~~~gLSGGQKqRvsIAraLv~~P~ILlLDEpTSGLDs~sa~~vv~~L~~~a~~ 120 (1202)
+.++.++++++.+||. +..|..++ .+|||||||||+|||||+.+|+||+|||||||||+.++..+++.|+++. +
T Consensus 138 ~~~~~~~~~l~~~gl~~~~~~~~~~----~~LSgGq~QRv~iAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~-~ 212 (267)
T 2zu0_C 138 DFQDLMEEKIALLKMPEDLLTRSVN----VGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLR-D 212 (267)
T ss_dssp HHHHHHHHHHHHTTCCTTTTTSBTT----TTCCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHTTC-C
T ss_pred HHHHHHHHHHHHcCCChhHhcCCcc----cCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-h
Confidence 3456788999999996 56777764 2599999999999999999999999999999999999999999998875 3
Q ss_pred CCCEEEEEecCCChHHHhh-hcceEEecCCcEEEEcCcchHHHHHHhCCC
Q 000979 121 NSGTAVISLLQPAPETYDL-FDDIILLSDGQIVYQGPRELVLEFFASMGF 169 (1202)
Q Consensus 121 ~~tTiIiaihQp~~s~~~~-fD~IvvL~~G~vvy~G~~~el~~~F~~lG~ 169 (1202)
.++|||++.|.+. .+... +|+|++|.+|++++.|+++++.. ....||
T Consensus 213 ~g~tviivtHd~~-~~~~~~~d~v~~l~~G~i~~~g~~~~~~~-~~~~~~ 260 (267)
T 2zu0_C 213 GKRSFIIVTHYQR-ILDYIKPDYVHVLYQGRIVKSGDFTLVKQ-LEEQGY 260 (267)
T ss_dssp SSCEEEEECSSGG-GGGTSCCSEEEEEETTEEEEEECTTHHHH-HHTTTC
T ss_pred cCCEEEEEeeCHH-HHHhhcCCEEEEEECCEEEEEcCHHHHhh-hhhcch
Confidence 5788888887654 33344 89999999999999999988754 334444
|
| >2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=5e-20 Score=202.10 Aligned_cols=112 Identities=21% Similarity=0.227 Sum_probs=92.5
Q ss_pred hhhHHHHHHHHHhCC-cccccccccCCcccccCccccchhhHHHHHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHhHh
Q 000979 42 EANVITDYYLKVLGL-DVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHI 120 (1202)
Q Consensus 42 ~~~~~v~~il~~lgL-~~~~dT~VG~~~~~gLSGGQKqRvsIAraLv~~P~ILlLDEpTSGLDs~sa~~vv~~L~~~a~~ 120 (1202)
+.++.++++++.+|| .+..|..++ .+|||||||||+|||||+.+|+||+|||||||||+.++..+.+.|+++.+
T Consensus 117 ~~~~~~~~~l~~~gl~~~~~~~~~~----~~LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~- 191 (250)
T 2d2e_A 117 EFWTKVKKALELLDWDESYLSRYLN----EGFSGGEKKRNEILQLLVLEPTYAVLDETDSGLDIDALKVVARGVNAMRG- 191 (250)
T ss_dssp HHHHHHHHHHHHHTCCGGGGGSBTT----CC----HHHHHHHHHHHHHCCSEEEEECGGGTTCHHHHHHHHHHHHHHCS-
T ss_pred HHHHHHHHHHHHcCCChhHhcCCcc----cCCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHh-
Confidence 335668889999999 588888875 13999999999999999999999999999999999999999999998754
Q ss_pred CCCEEEEEecCCChHHHhh-hcceEEecCCcEEEEcCcch
Q 000979 121 NSGTAVISLLQPAPETYDL-FDDIILLSDGQIVYQGPREL 159 (1202)
Q Consensus 121 ~~tTiIiaihQp~~s~~~~-fD~IvvL~~G~vvy~G~~~e 159 (1202)
.++|||++.|.+. .+... +|+|++|++|++++.|+++.
T Consensus 192 ~g~tvi~vtHd~~-~~~~~~~d~v~~l~~G~i~~~g~~~~ 230 (250)
T 2d2e_A 192 PNFGALVITHYQR-ILNYIQPDKVHVMMDGRVVATGGPEL 230 (250)
T ss_dssp TTCEEEEECSSSG-GGGTSCCSEEEEEETTEEEEEESHHH
T ss_pred cCCEEEEEecCHH-HHHHhcCCEEEEEECCEEEEEeCHHH
Confidence 5789888888654 44455 59999999999999999873
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=6.3e-20 Score=200.59 Aligned_cols=113 Identities=28% Similarity=0.392 Sum_probs=97.0
Q ss_pred hHHHHHHHHHhCCcccc-------cccccCCcccccCccccchhhHHHHHhcCCeEeeeeCCCccccHHHHHHHHHHHHH
Q 000979 44 NVITDYYLKVLGLDVCA-------DTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQ 116 (1202)
Q Consensus 44 ~~~v~~il~~lgL~~~~-------dT~VG~~~~~gLSGGQKqRvsIAraLv~~P~ILlLDEpTSGLDs~sa~~vv~~L~~ 116 (1202)
++.++++++.+||.+.. +|.++ +.+..|||||||||+|||||+.+|+||+|||||||||+.++..+++.|++
T Consensus 112 ~~~~~~~l~~~~l~~~~~~~~~gl~~~~~-~~~~~LSgGq~qRv~iAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~ 190 (247)
T 2ff7_A 112 VEKVIYAAKLAGAHDFISELREGYNTIVG-EQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHK 190 (247)
T ss_dssp HHHHHHHHHHHTCHHHHHTSTTGGGCBCS-TTTTCCCHHHHHHHHHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhChHHHHHhCcchhhhhhh-CCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 34567788889987644 45565 55678999999999999999999999999999999999999999999998
Q ss_pred HhHhCCCEEEEEecCCChHHHhhhcceEEecCCcEEEEcCcchHH
Q 000979 117 NIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVL 161 (1202)
Q Consensus 117 ~a~~~~tTiIiaihQp~~s~~~~fD~IvvL~~G~vvy~G~~~el~ 161 (1202)
+. .++|||++.|.+. ..+.+|+|++|++|++++.|+++++.
T Consensus 191 ~~--~g~tviivtH~~~--~~~~~d~v~~l~~G~i~~~g~~~~l~ 231 (247)
T 2ff7_A 191 IC--KGRTVIIIAHRLS--TVKNADRIIVMEKGKIVEQGKHKELL 231 (247)
T ss_dssp HH--TTSEEEEECSSGG--GGTTSSEEEEEETTEEEEEECHHHHH
T ss_pred Hc--CCCEEEEEeCCHH--HHHhCCEEEEEECCEEEEECCHHHHH
Confidence 73 4788888877654 44669999999999999999998886
|
| >3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=99.79 E-value=2.9e-20 Score=229.79 Aligned_cols=103 Identities=22% Similarity=0.305 Sum_probs=91.0
Q ss_pred CCcccccccccCCcccccCccccchhhHHHHHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHhHhCCCEEEEEecCCCh
Q 000979 55 GLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAP 134 (1202)
Q Consensus 55 gL~~~~dT~VG~~~~~gLSGGQKqRvsIAraLv~~P~ILlLDEpTSGLDs~sa~~vv~~L~~~a~~~~tTiIiaihQp~~ 134 (1202)
.|++..||.+| +.+..|||||||||+|||||+++|+||+|||||||||+.++..+.+.+++.. +++|+|+..|+ .
T Consensus 476 ~~~~g~~t~~~-~~g~~LSgGq~Qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~--~~~t~i~itH~--l 550 (598)
T 3qf4_B 476 HLPEGYETVLT-DNGEDLSQGQRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKLM--EGKTSIIIAHR--L 550 (598)
T ss_dssp TSTTGGGCBCH-HHHTTSCHHHHHHHHHHHHHHTCCSEEEECCCCTTCCHHHHHHHHHHHHHHH--TTSEEEEESCC--T
T ss_pred hccccccchhc-CCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHc--CCCEEEEEecC--H
Confidence 45678999999 6778899999999999999999999999999999999999999999999874 45666665554 4
Q ss_pred HHHhhhcceEEecCCcEEEEcCcchHHH
Q 000979 135 ETYDLFDDIILLSDGQIVYQGPRELVLE 162 (1202)
Q Consensus 135 s~~~~fD~IvvL~~G~vvy~G~~~el~~ 162 (1202)
++.+.+|+|++|++|+++++|+|+|+++
T Consensus 551 ~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 578 (598)
T 3qf4_B 551 NTIKNADLIIVLRDGEIVEMGKHDELIQ 578 (598)
T ss_dssp THHHHCSEEEEECSSSEEECSCHHHHHH
T ss_pred HHHHcCCEEEEEECCEEEEECCHHHHHh
Confidence 5678899999999999999999999985
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=7.9e-20 Score=202.53 Aligned_cols=109 Identities=19% Similarity=0.319 Sum_probs=91.5
Q ss_pred HHHHHHHh--CCcccccccccCCcccccCccccchhhHHHHHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHhHhCCCE
Q 000979 47 TDYYLKVL--GLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGT 124 (1202)
Q Consensus 47 v~~il~~l--gL~~~~dT~VG~~~~~gLSGGQKqRvsIAraLv~~P~ILlLDEpTSGLDs~sa~~vv~~L~~~a~~~~tT 124 (1202)
++.+++.+ ||.+..+.. ...|||||||||+|||||+.+|+||+|||||||||..++..+++.|+++.++.++|
T Consensus 135 ~~~~l~~l~~gl~~~~~~~-----~~~LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~t 209 (271)
T 2ixe_A 135 AHDFISGFPQGYDTEVGET-----GNQLSGGQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRT 209 (271)
T ss_dssp CHHHHHHSTTGGGSBCCGG-----GTTSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHCTTTTTSE
T ss_pred HHHHHHhhhcchhhhhcCC-----cCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHHhhcCCE
Confidence 45566766 665554444 45899999999999999999999999999999999999999999999875445788
Q ss_pred EEEEecCCChHHHhhhcceEEecCCcEEEEcCcchHHH
Q 000979 125 AVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLE 162 (1202)
Q Consensus 125 iIiaihQp~~s~~~~fD~IvvL~~G~vvy~G~~~el~~ 162 (1202)
||++.|.+ +....+|+|++|++|++++.|+++++..
T Consensus 210 viivtHd~--~~~~~~d~v~~l~~G~i~~~g~~~~l~~ 245 (271)
T 2ixe_A 210 VLLITQQL--SLAERAHHILFLKEGSVCEQGTHLQLME 245 (271)
T ss_dssp EEEECSCH--HHHTTCSEEEEEETTEEEEEECHHHHHH
T ss_pred EEEEeCCH--HHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 88877764 4556799999999999999999998864
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C | Back alignment and structure |
|---|
Probab=99.79 E-value=9.6e-20 Score=198.89 Aligned_cols=111 Identities=23% Similarity=0.226 Sum_probs=97.9
Q ss_pred hHHHHHHHHHhCCcccccccccCCcccccCccccchhhHHHHHhcCCe-------EeeeeCCCccccHHHHHHHHHHHHH
Q 000979 44 NVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPAL-------ALFMDEISTGLDSSTTFQIVNCLRQ 116 (1202)
Q Consensus 44 ~~~v~~il~~lgL~~~~dT~VG~~~~~gLSGGQKqRvsIAraLv~~P~-------ILlLDEpTSGLDs~sa~~vv~~L~~ 116 (1202)
++.++++++.+||.+..|..+ ..||||||||++|||||+.+|+ +|+|||||||||..++..+.+.|++
T Consensus 104 ~~~~~~~l~~~~l~~~~~~~~-----~~LSgGq~qrv~lAraL~~~p~~~~~~~~lllLDEPts~LD~~~~~~l~~~l~~ 178 (249)
T 2qi9_C 104 TELLNDVAGALALDDKLGRST-----NQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSA 178 (249)
T ss_dssp HHHHHHHHHHTTCGGGTTSBG-----GGCCHHHHHHHHHHHHHHHHCTTTCTTCCEEEESSTTTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCChhHhcCCh-----hhCCHHHHHHHHHHHHHHcCCCcCCCCCeEEEEECCcccCCHHHHHHHHHHHHH
Confidence 456788999999999888766 4799999999999999999999 9999999999999999999999999
Q ss_pred HhHhCCCEEEEEecCCChHHHhhhcceEEecCCcEEEEcCcchHH
Q 000979 117 NIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVL 161 (1202)
Q Consensus 117 ~a~~~~tTiIiaihQp~~s~~~~fD~IvvL~~G~vvy~G~~~el~ 161 (1202)
+++ .++|||++.|.+ ..+.+.+|++++|++|++++.|+++++.
T Consensus 179 l~~-~g~tviivtHd~-~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 221 (249)
T 2qi9_C 179 LSQ-QGLAIVMSSHDL-NHTLRHAHRAWLLKGGKMLASGRREEVL 221 (249)
T ss_dssp HHH-TTCEEEEECSCH-HHHHHHCSEEEEEETTEEEEEEEHHHHS
T ss_pred HHh-CCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 865 478888876654 3556899999999999999999988774
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} | Back alignment and structure |
|---|
Probab=99.79 E-value=1.3e-19 Score=199.73 Aligned_cols=112 Identities=25% Similarity=0.319 Sum_probs=95.4
Q ss_pred HHHHHHHHhC-------CcccccccccCCcccccCccccchhhHHHHHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHh
Q 000979 46 ITDYYLKVLG-------LDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNI 118 (1202)
Q Consensus 46 ~v~~il~~lg-------L~~~~dT~VG~~~~~gLSGGQKqRvsIAraLv~~P~ILlLDEpTSGLDs~sa~~vv~~L~~~a 118 (1202)
.+++.++.+| |++..||.++ +.+..|||||||||+|||||+.+|+||+|||||||||+.++..+++.|+++.
T Consensus 124 ~~~~~l~~~~l~~~~~~l~~~~~~~~~-~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~l~ 202 (260)
T 2ghi_A 124 EVIKATKSAQLYDFIEALPKKWDTIVG-NKGMKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDLR 202 (260)
T ss_dssp HHHHHHHHTTCHHHHHTSTTGGGCEES-SSSBCCCHHHHHHHHHHHHHHHCCSEEEEECCCCTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCHHHHHhcccccccccc-CCcCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHhc
Confidence 3455666665 4556788887 5578899999999999999999999999999999999999999999999874
Q ss_pred HhCCCEEEEEecCCChHHHhhhcceEEecCCcEEEEcCcchHHH
Q 000979 119 HINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLE 162 (1202)
Q Consensus 119 ~~~~tTiIiaihQp~~s~~~~fD~IvvL~~G~vvy~G~~~el~~ 162 (1202)
+++|||++.|.+. ..+.+|+|++|++|++++.|+++++..
T Consensus 203 --~~~tviivtH~~~--~~~~~d~i~~l~~G~i~~~g~~~~l~~ 242 (260)
T 2ghi_A 203 --KNRTLIIIAHRLS--TISSAESIILLNKGKIVEKGTHKDLLK 242 (260)
T ss_dssp --TTSEEEEECSSGG--GSTTCSEEEEEETTEEEEEECHHHHHH
T ss_pred --CCCEEEEEcCCHH--HHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 3678888888765 346699999999999999999998864
|
| >3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.78 E-value=2.2e-21 Score=214.92 Aligned_cols=147 Identities=14% Similarity=0.124 Sum_probs=96.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCCcccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCC
Q 000979 644 LTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVD 723 (1202)
Q Consensus 644 ~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~ 723 (1202)
.++|+||||||||||+|+|+|... +.+|++.++|.+......++.++|++|++.+++.+||.||+.|+..... ...
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~--~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~--~~~ 79 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQV--SRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINN--ENC 79 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC--------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBC--TTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC--CCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhccc--HHH
Confidence 489999999999999999999765 4589999999877555556789999999999999999999988754321 111
Q ss_pred HHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 000979 724 SETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD 803 (1202)
Q Consensus 724 ~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~ 803 (1202)
.+ .+.+.++ .+..+... .+||||||||++|||+++. +++|||||.|||+.. .+.++++.+
T Consensus 80 ~~----~i~~~~~----~~~~~~~~-----~~LS~G~~qrv~iaRal~~---lllldep~~gL~~lD----~~~l~~L~~ 139 (270)
T 3sop_A 80 WE----PIEKYIN----EQYEKFLK-----EEVNIARKKRIPDTRVHCC---LYFISPTGHSLRPLD----LEFMKHLSK 139 (270)
T ss_dssp SH----HHHHHHH----HHHHHHHH-----HHSCTTCCSSCCCCSCCEE---EEEECCCSSSCCHHH----HHHHHHHHT
T ss_pred HH----HHHHHHH----HHHHhhhH-----HhcCcccchhhhhheeeee---eEEEecCCCcCCHHH----HHHHHHHHh
Confidence 11 1223322 22333332 3699999999999999875 999999999999987 455666655
Q ss_pred CCCEEEEEecCC
Q 000979 804 TGRTVVCTIHQP 815 (1202)
Q Consensus 804 ~g~tvi~~~H~~ 815 (1202)
. .+||+++|..
T Consensus 140 ~-~~vI~Vi~K~ 150 (270)
T 3sop_A 140 V-VNIIPVIAKA 150 (270)
T ss_dssp T-SEEEEEETTG
T ss_pred c-CcEEEEEecc
Confidence 5 8999999864
|
| >2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=1.7e-18 Score=216.97 Aligned_cols=108 Identities=24% Similarity=0.376 Sum_probs=93.5
Q ss_pred HHHHHHHHHcCCCcc-ccccccCCCCCCCCHHHHHHHHHHHHHhhCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCC
Q 000979 729 MFIDEVMELVELNPL-RQSLVGLPGVSGLSTEQRKRLTIAVELVANP--SIIFMDEPTSGLDARAAAIVMRTVRNTVDTG 805 (1202)
Q Consensus 729 ~~~~~~l~~l~l~~~-~~~~~~~~~~~~LSgGqrqRv~ia~aL~~~p--~illlDEPtsgLD~~~~~~v~~~l~~~~~~g 805 (1202)
++++ .++.+||.+. .++.+ ..|||||||||+||++|..+| ++|+|||||+|||+.....+.++|+++++.|
T Consensus 358 ~rl~-~L~~vGL~~l~l~r~~-----~tLSGGe~QRV~LA~aL~~~p~~~llILDEPT~~Ld~~~~~~L~~~l~~L~~~G 431 (842)
T 2vf7_A 358 KRLD-VLLHLGLGYLGLDRST-----PTLSPGELQRLRLATQLYSNLFGVVYVLDEPSAGLHPADTEALLSALENLKRGG 431 (842)
T ss_dssp HHHH-HHHHTTCTTSBTTCBG-----GGSCHHHHHHHHHHHHTTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHTTT
T ss_pred HHHH-HHHhCCCCcCCccCCc-----CcCCHHHHHHHHHHHHHhhCCCCeEEEeeCccccCCHHHHHHHHHHHHHHHHcC
Confidence 3444 5778898765 45543 579999999999999999999 5999999999999999999999999998889
Q ss_pred CEEEEEecCCCHHHHHhcceEEEEe-----cCCEEEEEcCCCcc
Q 000979 806 RTVVCTIHQPSIDIFEAFDELFLMK-----RGGQEIYVGPLGRH 844 (1202)
Q Consensus 806 ~tvi~~~H~~~~~~~~~~d~v~~l~-----~gG~~~~~G~~~~~ 844 (1202)
.|||+++|++. +.+.+|++++|. +||++++.|++++.
T Consensus 432 ~TVIvVeHdl~--~l~~aD~ii~lgpgaG~~~G~iv~~g~~~~~ 473 (842)
T 2vf7_A 432 NSLFVVEHDLD--VIRRADWLVDVGPEAGEKGGEILYSGPPEGL 473 (842)
T ss_dssp CEEEEECCCHH--HHTTCSEEEEECSSSGGGCCSEEEEECGGGG
T ss_pred CEEEEEcCCHH--HHHhCCEEEEeCCCcccCCCEEEEecCHHHH
Confidence 99999999974 667899999994 57999999998753
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.78 E-value=9.4e-20 Score=199.13 Aligned_cols=114 Identities=23% Similarity=0.247 Sum_probs=97.9
Q ss_pred hHHHHHHHHHhCCccccc-------ccccCCcccccCccccchhhHHHHHhcCCeEeeeeCCCccccHHHHHHHHHHHHH
Q 000979 44 NVITDYYLKVLGLDVCAD-------TMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQ 116 (1202)
Q Consensus 44 ~~~v~~il~~lgL~~~~d-------T~VG~~~~~gLSGGQKqRvsIAraLv~~P~ILlLDEpTSGLDs~sa~~vv~~L~~ 116 (1202)
++.++++++.+||.+..+ |.++ +.+..|||||||||+|||||+.+|+||+|||||||||+.++..+++.+++
T Consensus 106 ~~~~~~~l~~~~l~~~~~~~~~gl~~~~~-~~~~~LSgGq~qrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~ 184 (243)
T 1mv5_A 106 DEDLWQVLDLAFARSFVENMPDQLNTEVG-ERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDS 184 (243)
T ss_dssp HHHHHHHHHHHTCTTTTTSSTTGGGCEES-TTSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHHH
T ss_pred HHHHHHHHHHhChHHHHHhCccchhchhc-cCcCcCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHH
Confidence 345778899999987654 4455 45678999999999999999999999999999999999999999999998
Q ss_pred HhHhCCCEEEEEecCCChHHHhhhcceEEecCCcEEEEcCcchHHH
Q 000979 117 NIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLE 162 (1202)
Q Consensus 117 ~a~~~~tTiIiaihQp~~s~~~~fD~IvvL~~G~vvy~G~~~el~~ 162 (1202)
+. .++|||++.|.+ +..+.+|+|++|++|++++.|+++++.+
T Consensus 185 ~~--~~~tvi~vtH~~--~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 226 (243)
T 1mv5_A 185 LM--KGRTTLVIAHRL--STIVDADKIYFIEKGQITGSGKHNELVA 226 (243)
T ss_dssp HH--TTSEEEEECCSH--HHHHHCSEEEEEETTEECCCSCHHHHHH
T ss_pred hc--CCCEEEEEeCCh--HHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 75 478888887765 4456799999999999999999998864
|
| >3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.78 E-value=1.3e-20 Score=211.74 Aligned_cols=154 Identities=15% Similarity=0.122 Sum_probs=118.9
Q ss_pred eecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCCcc-------cc--cceEEEeecCCC-CC
Q 000979 632 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQE-------TF--ARISGYCEQNDI-HS 701 (1202)
Q Consensus 632 L~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~-------~~--~~~~~~v~q~~~-~~ 701 (1202)
++++|+++++|++++|+||||||||||++.|+|...+ ..|+|.++|.+.... .+ ++.++|++|++. .+
T Consensus 90 ~~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~--~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~~ 167 (302)
T 3b9q_A 90 KTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKN--EGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAK 167 (302)
T ss_dssp CCSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHHH--TTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CCC
T ss_pred ccccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHH--cCCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCccC
Confidence 4678999999999999999999999999999997542 258999999875431 12 346899999988 88
Q ss_pred CCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCC--EEEE
Q 000979 702 PFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPS--IIFM 779 (1202)
Q Consensus 702 ~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~--illl 779 (1202)
|.+|++|++.++... ..+ ..+++.+|+.+..+..+ ++|| |||++|||+|+.+|+ +|+|
T Consensus 168 ~~~~v~e~l~~~~~~----~~d--------~~lldt~gl~~~~~~~~-----~eLS---kqr~~iaral~~~P~e~lLvL 227 (302)
T 3b9q_A 168 AATVLSKAVKRGKEE----GYD--------VVLCDTSGRLHTNYSLM-----EELI---ACKKAVGKIVSGAPNEILLVL 227 (302)
T ss_dssp HHHHHHHHHHHHHHT----TCS--------EEEECCCCCSSCCHHHH-----HHHH---HHHHHHHTTSTTCCSEEEEEE
T ss_pred HHHHHHHHHHHHHHc----CCc--------chHHhcCCCCcchhHHH-----HHHH---HHHHHHHHhhccCCCeeEEEE
Confidence 889999999876421 110 13456677766655543 4699 999999999999999 9999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHH-hCCCEEEEEecC
Q 000979 780 DEPTSGLDARAAAIVMRTVRNTV-DTGRTVVCTIHQ 814 (1202)
Q Consensus 780 DEPtsgLD~~~~~~v~~~l~~~~-~~g~tvi~~~H~ 814 (1202)
| ||+|||+... ++++. +.|.|+|++||.
T Consensus 228 D-ptsglD~~~~------~~~~~~~~g~t~iiiThl 256 (302)
T 3b9q_A 228 D-GNTGLNMLPQ------AREFNEVVGITGLILTKL 256 (302)
T ss_dssp E-GGGGGGGHHH------HHHHHHHTCCCEEEEECC
T ss_pred e-CCCCcCHHHH------HHHHHHhcCCCEEEEeCC
Confidence 9 9999999854 24444 358999999994
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=99.77 E-value=2.6e-19 Score=196.87 Aligned_cols=110 Identities=15% Similarity=0.065 Sum_probs=95.9
Q ss_pred hhHHHHHHHHHhCCc-ccccccccCCcccccCccccchhhHHHHHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHhHhC
Q 000979 43 ANVITDYYLKVLGLD-VCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHIN 121 (1202)
Q Consensus 43 ~~~~v~~il~~lgL~-~~~dT~VG~~~~~gLSGGQKqRvsIAraLv~~P~ILlLDEpTSGLDs~sa~~vv~~L~~~a~~~ 121 (1202)
.++.++++++.+||. +..|..+ ..||||||||++|||||+.+|+||+|||||||||+.++..+.+.|+++. +
T Consensus 104 ~~~~~~~~l~~~gl~~~~~~~~~-----~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~L~~~~--~ 176 (263)
T 2pjz_A 104 DRDLFLEMLKALKLGEEILRRKL-----YKLSAGQSVLVRTSLALASQPEIVGLDEPFENVDAARRHVISRYIKEYG--K 176 (263)
T ss_dssp CHHHHHHHHHHTTCCGGGGGSBG-----GGSCHHHHHHHHHHHHHHTCCSEEEEECTTTTCCHHHHHHHHHHHHHSC--S
T ss_pred HHHHHHHHHHHcCCChhHhcCCh-----hhCCHHHHHHHHHHHHHHhCCCEEEEECCccccCHHHHHHHHHHHHHhc--C
Confidence 345678899999998 8777766 4799999999999999999999999999999999999999999998753 2
Q ss_pred CCEEEEEecCCChHHHhhhc-ceEEecCCcEEEEcCcchHHH
Q 000979 122 SGTAVISLLQPAPETYDLFD-DIILLSDGQIVYQGPRELVLE 162 (1202)
Q Consensus 122 ~tTiIiaihQp~~s~~~~fD-~IvvL~~G~vvy~G~~~el~~ 162 (1202)
|+|++.|.+ ..+.+.+| ++++|++|++++.|+++++.+
T Consensus 177 --tviivtHd~-~~~~~~~d~~i~~l~~G~i~~~g~~~~l~~ 215 (263)
T 2pjz_A 177 --EGILVTHEL-DMLNLYKEYKAYFLVGNRLQGPISVSELLE 215 (263)
T ss_dssp --EEEEEESCG-GGGGGCTTSEEEEEETTEEEEEEEHHHHHT
T ss_pred --cEEEEEcCH-HHHHHhcCceEEEEECCEEEEecCHHHHHh
Confidence 777776655 35668899 999999999999999988863
|
| >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.77 E-value=1.4e-19 Score=209.18 Aligned_cols=117 Identities=16% Similarity=0.130 Sum_probs=98.6
Q ss_pred hhhhHHHHHHHHHhCCccccc-------ccccCCcccccCccccchhhHHHHHhcCCeEeeeeCCCccccHHHHHHHHHH
Q 000979 41 QEANVITDYYLKVLGLDVCAD-------TMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNC 113 (1202)
Q Consensus 41 ~~~~~~v~~il~~lgL~~~~d-------T~VG~~~~~gLSGGQKqRvsIAraLv~~P~ILlLDEpTSGLDs~sa~~vv~~ 113 (1202)
...++.++++++.+||.+..+ |.++ +.+.+|||||||||+|||||+.+|+||+|||||||||+.++.++.+.
T Consensus 119 ~~~~~~v~~~l~~~~L~~~~~~~p~~l~~~i~-~~g~~LSGGqrQRvalARAL~~~P~lLLLDEPts~LD~~~~~~l~~~ 197 (390)
T 3gd7_A 119 AHSDQEIWKVADEVGLRSVIEQFPGKLDFVLV-DGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRT 197 (390)
T ss_dssp CSCHHHHHHHHHHTTCHHHHTTSTTGGGCEEC-TTTTTSCHHHHHHHHHHHHHHTTCCEEEEESHHHHSCHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHhCCHHHHhhcccccccccc-cccccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHH
Confidence 344566788999999987554 4454 44567999999999999999999999999999999999999999999
Q ss_pred HHHHhHhCCCEEEEEecCCChHHHhhhcceEEecCCcEEEEcCcchHHH
Q 000979 114 LRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLE 162 (1202)
Q Consensus 114 L~~~a~~~~tTiIiaihQp~~s~~~~fD~IvvL~~G~vvy~G~~~el~~ 162 (1202)
|++.. .++|+|++.|+. +....+|+|+||++|++++.|+++++.+
T Consensus 198 l~~~~--~~~tvi~vtHd~--e~~~~aDri~vl~~G~i~~~g~~~el~~ 242 (390)
T 3gd7_A 198 LKQAF--ADCTVILCEARI--EAMLECDQFLVIEENKVRQYDSILELYH 242 (390)
T ss_dssp HHTTT--TTSCEEEECSSS--GGGTTCSEEEEEETTEEEEESSHHHHHH
T ss_pred HHHHh--CCCEEEEEEcCH--HHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 98753 467777776663 6777899999999999999999999864
|
| >2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=9.1e-23 Score=227.59 Aligned_cols=170 Identities=12% Similarity=0.149 Sum_probs=123.8
Q ss_pred eeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccC
Q 000979 603 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 682 (1202)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 682 (1202)
.++++||+|.|+ ..+|+|+|++|++||+++|+||||||||||+++|+|.. +|+|
T Consensus 101 ~i~~~~vs~~y~--------------~~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~-----~G~I------- 154 (305)
T 2v9p_A 101 FFNYQNIELITF--------------INALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL-----GGSV------- 154 (305)
T ss_dssp HHHHTTCCHHHH--------------HHHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH-----TCEE-------
T ss_pred eEEEEEEEEEcC--------------hhhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc-----CceE-------
Confidence 377888887763 23699999999999999999999999999999999976 2455
Q ss_pred CcccccceEEEeecCCCCCCCCCHHH-HHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHH
Q 000979 683 KQETFARISGYCEQNDIHSPFVTIYE-SLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQR 761 (1202)
Q Consensus 683 ~~~~~~~~~~~v~q~~~~~~~lTv~e-~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqr 761 (1202)
++|++|++.+++ .|++| |+.+.. ..+. .+.+.++.+ +.+..| | ..||||||
T Consensus 155 --------~~~v~q~~~lf~-~ti~~~ni~~~~------~~~~-----~~~~~i~~~-L~~gld---g----~~LSgGqk 206 (305)
T 2v9p_A 155 --------LSFANHKSHFWL-ASLADTRAALVD------DATH-----ACWRYFDTY-LRNALD---G----YPVSIDRK 206 (305)
T ss_dssp --------ECGGGTTSGGGG-GGGTTCSCEEEE------EECH-----HHHHHHHHT-TTGGGG---T----CCEECCCS
T ss_pred --------EEEecCcccccc-ccHHHHhhccCc------cccH-----HHHHHHHHH-hHccCC---c----cCcCHHHH
Confidence 346677776665 47776 765521 1111 234555553 333333 2 46999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCCEEEEEcCC
Q 000979 762 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPL 841 (1202)
Q Consensus 762 qRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G~~ 841 (1202)
|| ||||+++|+||| ||+||+.++..+.. .+|+++ ..+.+|++ +|+ +|++++.|+.
T Consensus 207 QR---ARAll~~p~iLl----Ts~LD~~~~~~i~~--------------ltH~~~--~~~~aD~i-vl~-~G~iv~~g~~ 261 (305)
T 2v9p_A 207 HK---AAVQIKAPPLLV----TSNIDVQAEDRYLY--------------LHSRVQ--TFRFEQPC-TDE-SGEQPFNITD 261 (305)
T ss_dssp SC---CCCEECCCCEEE----EESSCSTTCGGGGG--------------GTTTEE--EEECCCCC-CCC----CCCCCCH
T ss_pred HH---HHHHhCCCCEEE----ECCCCHHHHHHHHH--------------HhCCHH--HHHhCCEE-EEe-CCEEEEeCCH
Confidence 99 999999999999 99999999988852 188875 46789999 997 4899999986
Q ss_pred CccchhHHHHHhhC
Q 000979 842 GRHSCHLISYFEAI 855 (1202)
Q Consensus 842 ~~~~~~~~~~f~~~ 855 (1202)
+ ++..+|..+
T Consensus 262 ~----el~~~y~~l 271 (305)
T 2v9p_A 262 A----DWKSFFVRL 271 (305)
T ss_dssp H----HHHHHHHHS
T ss_pred H----HHHHHHHHH
Confidence 3 345555543
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.75 E-value=6.4e-19 Score=191.50 Aligned_cols=99 Identities=23% Similarity=0.277 Sum_probs=85.6
Q ss_pred cccccccCCcccccCccccchhhHHHHHhcCCeEeeeeCCCccccHHHHHHHHHHHH---HHhHhCCCEEEEEecCCChH
Q 000979 59 CADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLR---QNIHINSGTAVISLLQPAPE 135 (1202)
Q Consensus 59 ~~dT~VG~~~~~gLSGGQKqRvsIAraLv~~P~ILlLDEpTSGLDs~sa~~vv~~L~---~~a~~~~tTiIiaihQp~~s 135 (1202)
..+|.++ ..+..|||||||||+|||||+.+|+||+|||||||||+.++..+++.++ +. ..++|+|++.|.+..
T Consensus 116 ~~~~~~~-~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~--~~~~tviivtH~~~~- 191 (237)
T 2cbz_A 116 GDRTEIG-EKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGM--LKNKTRILVTHSMSY- 191 (237)
T ss_dssp GGGSEES-TTSBCCCHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHTTSTTST--TTTSEEEEECSCSTT-
T ss_pred ccccccc-CCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHHhh--cCCCEEEEEecChHH-
Confidence 3456676 5678899999999999999999999999999999999999999999985 32 247899998888764
Q ss_pred HHhhhcceEEecCCcEEEEcCcchHHH
Q 000979 136 TYDLFDDIILLSDGQIVYQGPRELVLE 162 (1202)
Q Consensus 136 ~~~~fD~IvvL~~G~vvy~G~~~el~~ 162 (1202)
.+.+|+|++|++|++++.|+++++.+
T Consensus 192 -~~~~d~v~~l~~G~i~~~g~~~~~~~ 217 (237)
T 2cbz_A 192 -LPQVDVIIVMSGGKISEMGSYQELLA 217 (237)
T ss_dssp -GGGSSEEEEEETTEEEEEECHHHHHH
T ss_pred -HHhCCEEEEEeCCEEEEeCCHHHHhh
Confidence 35799999999999999999998864
|
| >2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A | Back alignment and structure |
|---|
Probab=99.75 E-value=1.1e-19 Score=207.39 Aligned_cols=130 Identities=18% Similarity=0.135 Sum_probs=103.8
Q ss_pred EeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCCc-ccccceEEEeecCCCCCCCCCHHHH
Q 000979 631 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ-ETFARISGYCEQNDIHSPFVTIYES 709 (1202)
Q Consensus 631 iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~-~~~~~~~~~v~q~~~~~~~lTv~e~ 709 (1202)
+++++|+.+++|++++|+||||||||||+++|+|..++ .+|.|.++|.+... ...++.+++++
T Consensus 160 ~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~--~~g~i~i~~~~e~~~~~~~~~i~~~~-------------- 223 (330)
T 2pt7_A 160 AISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPK--EERIISIEDTEEIVFKHHKNYTQLFF-------------- 223 (330)
T ss_dssp HHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSCT--TSCEEEEESSCCCCCSSCSSEEEEEC--------------
T ss_pred HHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCcC--CCcEEEECCeeccccccchhEEEEEe--------------
Confidence 68999999999999999999999999999999998664 36899998864211 11222233321
Q ss_pred HHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHH
Q 000979 710 LLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 789 (1202)
Q Consensus 710 l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~ 789 (1202)
+ |||+||++||+||..+|++|+|||||+.
T Consensus 224 ---------------------------------------------g--gg~~~r~~la~aL~~~p~ilildE~~~~---- 252 (330)
T 2pt7_A 224 ---------------------------------------------G--GNITSADCLKSCLRMRPDRIILGELRSS---- 252 (330)
T ss_dssp ---------------------------------------------B--TTBCHHHHHHHHTTSCCSEEEECCCCST----
T ss_pred ---------------------------------------------C--CChhHHHHHHHHhhhCCCEEEEcCCChH----
Confidence 1 7999999999999999999999999982
Q ss_pred HHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecC
Q 000979 790 AAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 832 (1202)
Q Consensus 790 ~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~g 832 (1202)
++.+.|+.+...+.|+|+|+|+++ ..+.+||+++|.+|
T Consensus 253 ---e~~~~l~~~~~g~~tvi~t~H~~~--~~~~~dri~~l~~g 290 (330)
T 2pt7_A 253 ---EAYDFYNVLCSGHKGTLTTLHAGS--SEEAFIRLANMSSS 290 (330)
T ss_dssp ---HHHHHHHHHHTTCCCEEEEEECSS--HHHHHHHHHHHHHT
T ss_pred ---HHHHHHHHHhcCCCEEEEEEcccH--HHHHhhhheehhcC
Confidence 356777776543458999999987 67889999999864
|
| >1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.75 E-value=1.4e-22 Score=218.21 Aligned_cols=175 Identities=10% Similarity=-0.017 Sum_probs=107.2
Q ss_pred EeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCCc----ccccceEEEeecCCCCCCCCCH
Q 000979 631 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ----ETFARISGYCEQNDIHSPFVTI 706 (1202)
Q Consensus 631 iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~----~~~~~~~~~v~q~~~~~~~lTv 706 (1202)
-|+||||++++|++++|+||||||||||+++|+|..+ |++.+ |.+... ...++.++|++|++..++.++.
T Consensus 12 ~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~p-----G~i~~-g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 85 (218)
T 1z6g_A 12 SGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEFP-----NYFYF-SVSCTTRKKREKEKEGVDYYFIDKTIFEDKLK 85 (218)
T ss_dssp ----------CCCCEEEECSTTSSHHHHHHHHHHHST-----TTEEE-CCCEECSCCCSSCCBTTTBEECCHHHHHHHHH
T ss_pred cccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhCC-----CcEEE-eecccCCCCCcccccCCeEEECCHHHHHHhhh
Confidence 4999999999999999999999999999999999762 56777 654321 1234567899998655543321
Q ss_pred -HHHHHHHHHccCC-CCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHH-----HHHHhhCCCEEEE
Q 000979 707 -YESLLFSAWLRLS-PEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTI-----AVELVANPSIIFM 779 (1202)
Q Consensus 707 -~e~l~~~~~~~~~-~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~i-----a~aL~~~p~illl 779 (1202)
.+++.+. .+..+ ...+ +..++++++...+. ..+ ..||||||||++| +++|+.+|++++|
T Consensus 86 ~~~~l~~~-~~~~~~~g~~----~~~i~~~l~~~~~~-il~--------~~lsggq~qR~~i~~~~~~~~ll~~~~~~~L 151 (218)
T 1z6g_A 86 NEDFLEYD-NYANNFYGTL----KSEYDKAKEQNKIC-LFE--------MNINGVKQLKKSTHIKNALYIFIKPPSTDVL 151 (218)
T ss_dssp TTCEEEEE-EETTEEEEEE----HHHHHHHHHTTCEE-EEE--------ECHHHHHHHTTCSSCCSCEEEEEECSCHHHH
T ss_pred ccchhhhh-hcccccCCCc----HHHHHHHHhCCCcE-EEE--------ecHHHHHHHHHHhcCCCcEEEEEeCcCHHHH
Confidence 1111100 00000 0011 12356666654321 111 2599999999999 8999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHh-------CCCEEEEEecCCCHHHHHhcceE
Q 000979 780 DEPTSGLDARAAAIVMRTVRNTVD-------TGRTVVCTIHQPSIDIFEAFDEL 826 (1202)
Q Consensus 780 DEPtsgLD~~~~~~v~~~l~~~~~-------~g~tvi~~~H~~~~~~~~~~d~v 826 (1202)
||||+++|..+...+.+.|+++.+ .+.+.|+++|+++ +.++..|++
T Consensus 152 de~~~~~d~~~~~~i~~~l~~~~~~~~~~h~~~~d~iiv~~~~~-ea~~~~~~i 204 (218)
T 1z6g_A 152 LSRLLTRNTENQEQIQKRMEQLNIELHEANLLNFNLSIINDDLT-LTYQQLKNY 204 (218)
T ss_dssp HHHHHHTCCCCHHHHHHHHHHHHHHHHHHTTSCCSEEEECSSHH-HHHHHHHHH
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHHhhcccCCCEEEECCCHH-HHHHHHHHH
Confidence 999999999999999998887643 2344455555543 344444443
|
| >3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B | Back alignment and structure |
|---|
Probab=99.75 E-value=9.5e-18 Score=193.06 Aligned_cols=77 Identities=22% Similarity=0.325 Sum_probs=69.4
Q ss_pred CCCCCHHHHH------HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceE
Q 000979 753 VSGLSTEQRK------RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDEL 826 (1202)
Q Consensus 753 ~~~LSgGqrq------Rv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v 826 (1202)
++.||||||| |+++|++|+.+|++|+|||||+|||+..+..+.+.|+++.++|.|||++||++ ++.+.||++
T Consensus 246 ~~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~vi~~sH~~--~~~~~~d~~ 323 (339)
T 3qkt_A 246 LTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDE--ELKDAADHV 323 (339)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGGGSSEEEEEESCG--GGGGGCSEE
T ss_pred hHHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEEChH--HHHHhCCEE
Confidence 4579999999 67788888889999999999999999999999999999877789999999995 467899999
Q ss_pred EEEec
Q 000979 827 FLMKR 831 (1202)
Q Consensus 827 ~~l~~ 831 (1202)
+.|..
T Consensus 324 ~~l~~ 328 (339)
T 3qkt_A 324 IRISL 328 (339)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 99963
|
| >2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.75 E-value=4.4e-20 Score=210.98 Aligned_cols=153 Identities=16% Similarity=0.133 Sum_probs=119.8
Q ss_pred ecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCCcc-------cc--cceEEEeecCCC-CCC
Q 000979 633 NGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQE-------TF--ARISGYCEQNDI-HSP 702 (1202)
Q Consensus 633 ~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~-------~~--~~~~~~v~q~~~-~~~ 702 (1202)
+++|+++++|++++|+||||||||||++.|+|...+ ..|+|.++|.+.... .+ ++.++|++|++. ..|
T Consensus 148 ~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~--~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~p 225 (359)
T 2og2_A 148 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKN--EGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKA 225 (359)
T ss_dssp CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHHH--TTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCCH
T ss_pred CCcceecCCCeEEEEEcCCCChHHHHHHHHHhhccc--cCCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccCh
Confidence 468889999999999999999999999999997542 258999999876431 12 346899999988 888
Q ss_pred CCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCC--EEEEe
Q 000979 703 FVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPS--IIFMD 780 (1202)
Q Consensus 703 ~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~--illlD 780 (1202)
.+|++|++.++... ..+ ..+++.+|+.+..+..+ ++|| |||++|||+|+.+|+ +|+||
T Consensus 226 ~~tv~e~l~~~~~~----~~d--------~~lldt~Gl~~~~~~~~-----~eLS---kqr~~iaral~~~P~e~lLvLD 285 (359)
T 2og2_A 226 ATVLSKAVKRGKEE----GYD--------VVLCDTSGRLHTNYSLM-----EELI---ACKKAVGKIVSGAPNEILLVLD 285 (359)
T ss_dssp HHHHHHHHHHHHHT----TCS--------EEEEECCCCSSCCHHHH-----HHHH---HHHHHHHHHSTTCCSEEEEEEE
T ss_pred hhhHHHHHHHHHhC----CCH--------HHHHHhcCCChhhhhHH-----HHHH---HHHHHHHHHHhcCCCceEEEEc
Confidence 89999999876421 110 13455677766655543 4699 999999999999999 99999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHH-hCCCEEEEEecC
Q 000979 781 EPTSGLDARAAAIVMRTVRNTV-DTGRTVVCTIHQ 814 (1202)
Q Consensus 781 EPtsgLD~~~~~~v~~~l~~~~-~~g~tvi~~~H~ 814 (1202)
||+|||+..+. +++. +.|.|+|++||.
T Consensus 286 -pttglD~~~~~------~~~~~~~g~t~iiiThl 313 (359)
T 2og2_A 286 -GNTGLNMLPQA------REFNEVVGITGLILTKL 313 (359)
T ss_dssp -GGGGGGGHHHH------HHHHHHTCCCEEEEESC
T ss_pred -CCCCCCHHHHH------HHHHHhcCCeEEEEecC
Confidence 99999998652 3444 358999999994
|
| >2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.74 E-value=1.2e-20 Score=222.38 Aligned_cols=174 Identities=16% Similarity=0.087 Sum_probs=136.3
Q ss_pred eEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCc---cCCc--------ccccceEEEeecC
Q 000979 629 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGY---PKKQ--------ETFARISGYCEQN 697 (1202)
Q Consensus 629 ~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~---~~~~--------~~~~~~~~~v~q~ 697 (1202)
..+|+++ +++.+||+++|+||||||||||+++|+|...+ ..|.+.++|. +... ...++.++|++|+
T Consensus 145 ~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~--~~G~i~~~G~r~~ev~~~~~~~~~~~~l~r~i~~v~q~ 221 (438)
T 2dpy_A 145 VRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTRA--DVIVVGLIGERGREVKDFIENILGPDGRARSVVIAAPA 221 (438)
T ss_dssp CHHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSCC--SEEEEEEESCCHHHHHHHHHTTTHHHHHHTEEEEEECT
T ss_pred ceEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccCC--CeEEEEEeceecHHHHHHHHhhccccccCceEEEEECC
Confidence 4589999 99999999999999999999999999998763 4799999997 3321 2356789999995
Q ss_pred -CCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCE
Q 000979 698 -DIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSI 776 (1202)
Q Consensus 698 -~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~i 776 (1202)
+..++.+|+.+|+.+.+....... + ......|. ...+|+|| ||++|| +.+|++
T Consensus 222 ~~~~~~~~~v~~~~~~~ae~~~~~~----------~------~v~~~ld~------l~~lS~g~-qrvslA---l~~p~~ 275 (438)
T 2dpy_A 222 DVSPLLRMQGAAYATRIAEDFRDRG----------Q------HVLLIMDS------LTRYAMAQ-REIALA---IGEPPA 275 (438)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHHTTT----------C------EEEEEEEC------HHHHHHHH-HHHHHH---TTCCCC
T ss_pred CCCHHHHHHHHHHHHHHHHHHHhCC----------C------CHHHHHHh------HHHHHHHH-HHHHHH---hCCCcc
Confidence 556677899999987653211000 0 00111122 24599999 999999 889988
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHh---C-CC-----EEEEEecCCCHHHHHhcceEEEEecCCEEEEEcCC
Q 000979 777 IFMDEPTSGLDARAAAIVMRTVRNTVD---T-GR-----TVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPL 841 (1202)
Q Consensus 777 lllDEPtsgLD~~~~~~v~~~l~~~~~---~-g~-----tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G~~ 841 (1202)
|+|||+.....+.+.++++.+ + |. ||++++||++ ...+|++++|.+ |+++..|++
T Consensus 276 ------t~glD~~~~~~l~~ll~r~~~~~~~~GsiT~~~tVlv~tHdl~---~~iad~v~~l~d-G~Ivl~~~~ 339 (438)
T 2dpy_A 276 ------TKGYPPSVFAKLPALVERAGNGIHGGGSITAFYTVLTEGDDQQ---DPIADSARAILD-GHIVLSRRL 339 (438)
T ss_dssp ------SSSCCTTHHHHHHHHHTTCSCCSTTSCEEEEEEEEECSSSCSC---CHHHHHHHHHSS-EEEEECHHH
T ss_pred ------cccCCHHHHHHHHHHHHHHHhccCCCCcccceeEEEEeCCCcc---chhhceEEEEeC-cEEEEeCCH
Confidence 999999999999999999865 3 64 9999999987 467899999984 899998864
|
| >2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.74 E-value=5.1e-18 Score=194.39 Aligned_cols=80 Identities=11% Similarity=0.135 Sum_probs=72.1
Q ss_pred CCCHHHHHHHHHHHHHh---------hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcce
Q 000979 755 GLSTEQRKRLTIAVELV---------ANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDE 825 (1202)
Q Consensus 755 ~LSgGqrqRv~ia~aL~---------~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~ 825 (1202)
.||||||||++||++|+ .+|+||||||||++||+..+..+++.|+++. .|+|++||. + . .+|+
T Consensus 265 ~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~~---qt~i~~th~-~-~---~~~~ 336 (359)
T 2o5v_A 265 YASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASVP---QAIVTGTEL-A-P---GAAL 336 (359)
T ss_dssp HCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHSS---EEEEEESSC-C-T---TCSE
T ss_pred hCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhcC---cEEEEEEec-c-c---cCCE
Confidence 69999999999999999 8999999999999999999999999998763 699999994 4 2 8899
Q ss_pred EEEEecCCEEEEEcCCCc
Q 000979 826 LFLMKRGGQEIYVGPLGR 843 (1202)
Q Consensus 826 v~~l~~gG~~~~~G~~~~ 843 (1202)
+++|.+ |+++..|++++
T Consensus 337 i~~l~~-G~i~~~g~~~~ 353 (359)
T 2o5v_A 337 TLRAQA-GRFTPVADEEM 353 (359)
T ss_dssp EEEEET-TEEEECCCTTT
T ss_pred EEEEEC-CEEEecCCHHH
Confidence 999985 89999998754
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A | Back alignment and structure |
|---|
Probab=99.73 E-value=1.8e-18 Score=186.99 Aligned_cols=98 Identities=20% Similarity=0.230 Sum_probs=83.1
Q ss_pred cccccccCCcccccCccccchhhHHHHHhcCCeEeeeeCCCccccHHHHHHHHHHH-HHHhHhCCCEEEEEecCCChHHH
Q 000979 59 CADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCL-RQNIHINSGTAVISLLQPAPETY 137 (1202)
Q Consensus 59 ~~dT~VG~~~~~gLSGGQKqRvsIAraLv~~P~ILlLDEpTSGLDs~sa~~vv~~L-~~~a~~~~tTiIiaihQp~~s~~ 137 (1202)
..+|.+| +.+..|||||||||+|||||+.+|+||+|||||||||+.++..+++.+ ++.. .++|||++.|++ +..
T Consensus 119 ~~~~~~~-~~~~~LSgGqkqrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~--~~~tvi~vtH~~--~~~ 193 (229)
T 2pze_A 119 KDNIVLG-EGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLM--ANKTRILVTSKM--EHL 193 (229)
T ss_dssp GGGSCBC-TTCTTSCHHHHHHHHHHHHHHSCCSEEEEESTTTTSCHHHHHHHHHHCCCCCT--TTSEEEEECCCH--HHH
T ss_pred ccccccc-CCCCcCCHHHHHHHHHHHHHhcCCCEEEEECcccCCCHHHHHHHHHHHHHHhh--CCCEEEEEcCCh--HHH
Confidence 3456676 456789999999999999999999999999999999999999999874 4433 367888887765 344
Q ss_pred hhhcceEEecCCcEEEEcCcchHH
Q 000979 138 DLFDDIILLSDGQIVYQGPRELVL 161 (1202)
Q Consensus 138 ~~fD~IvvL~~G~vvy~G~~~el~ 161 (1202)
+.+|+|++|++|++++.|+++++.
T Consensus 194 ~~~d~v~~l~~G~i~~~g~~~~~~ 217 (229)
T 2pze_A 194 KKADKILILHEGSSYFYGTFSELQ 217 (229)
T ss_dssp HHCSEEEEEETTEEEEEECHHHHH
T ss_pred HhCCEEEEEECCEEEEECCHHHHH
Confidence 669999999999999999998886
|
| >1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=9.5e-19 Score=198.02 Aligned_cols=182 Identities=16% Similarity=0.152 Sum_probs=114.8
Q ss_pred EEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEE-EEEEcCccCCcccccceEEEeecCCCCCCCCCHHH
Q 000979 630 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITG-NITISGYPKKQETFARISGYCEQNDIHSPFVTIYE 708 (1202)
Q Consensus 630 ~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G-~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~lTv~e 708 (1202)
.+|+++++.+++|++++|+||||||||||++.|+|...+. .| .+.+.+........++.+..+.+... +++.+
T Consensus 23 ~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~--~G~~v~~~~~e~~~~~~~~r~~~~~~~~~----~~~~~ 96 (296)
T 1cr0_A 23 TGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTA--MGKKVGLAMLEESVEETAEDLIGLHNRVR----LRQSD 96 (296)
T ss_dssp TTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHT--SCCCEEEEESSSCHHHHHHHHHHHHTTCC----GGGCH
T ss_pred HHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHH--cCCeEEEEeCcCCHHHHHHHHHHHHcCCC----hhhcc
Confidence 4699999999999999999999999999999999964311 24 45443333222222222222222211 12234
Q ss_pred HHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHH-HHHHHHHHHHhhCCCEEEEeCCCC---
Q 000979 709 SLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQ-RKRLTIAVELVANPSIIFMDEPTS--- 784 (1202)
Q Consensus 709 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGq-rqRv~ia~aL~~~p~illlDEPts--- 784 (1202)
++.... + +.++.++.++++++..++. ..+. ...+|.+| +||+. |+++..+|+++++||||+
T Consensus 97 ~l~~~~-~------~~~~~~~~~~~~l~~~~l~-i~~~------~~~~~~~~l~~~~~-a~~~~~~p~llilDept~~~~ 161 (296)
T 1cr0_A 97 SLKREI-I------ENGKFDQWFDELFGNDTFH-LYDS------FAEAETDRLLAKLA-YMRSGLGCDVIILDHISIVVS 161 (296)
T ss_dssp HHHHHH-H------HHTHHHHHHHHHHSSSCEE-EECC------CCSCCHHHHHHHHH-HHHHTTCCSEEEEEEEC----
T ss_pred ccccCC-C------CHHHHHHHHHHHhccCCEE-EECC------CCCCCHHHHHHHHH-HHHHhcCCCEEEEcCccccCC
Confidence 443221 1 1112223344444322221 1111 13588998 66666 999999999999999999
Q ss_pred C---CCH-HHHHHHHHHHHHHHhC-CCEEEEEecCCC-H--------------------HHHHhcceEEEEecC
Q 000979 785 G---LDA-RAAAIVMRTVRNTVDT-GRTVVCTIHQPS-I--------------------DIFEAFDELFLMKRG 832 (1202)
Q Consensus 785 g---LD~-~~~~~v~~~l~~~~~~-g~tvi~~~H~~~-~--------------------~~~~~~d~v~~l~~g 832 (1202)
+ +|. .....+.+.|++++++ |.|||+++|+.. . .+.+.||++++|.+|
T Consensus 162 ~~~~~d~~~~~~~i~~~L~~la~~~~~~vi~vsh~~r~~~~~~~~~~~~p~l~dl~~s~~i~~~aD~vi~L~~~ 235 (296)
T 1cr0_A 162 ASGESDERKMIDNLMTKLKGFAKSTGVVLVVICHLKNPDKGKAHEEGRPVSITDLRGSGALRQLSDTIIALERN 235 (296)
T ss_dssp -------CHHHHHHHHHHHHHHHHHCCEEEEEEECC-----------------CCC---CHHHHCSEEEEEEEC
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEEecCccccccccccCCCCCHHHhcccHHhHhhCcEEEEEecC
Confidence 5 455 6678899999999765 999999999962 2 467789999999864
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=9.5e-18 Score=187.00 Aligned_cols=110 Identities=20% Similarity=0.223 Sum_probs=86.5
Q ss_pred HHHHHHhCCcc-------cccccccCCcccccCccccchhhHHHHHhcCCeEeeeeCCCccccHHHHHHHHHHH-HHHhH
Q 000979 48 DYYLKVLGLDV-------CADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCL-RQNIH 119 (1202)
Q Consensus 48 ~~il~~lgL~~-------~~dT~VG~~~~~gLSGGQKqRvsIAraLv~~P~ILlLDEpTSGLDs~sa~~vv~~L-~~~a~ 119 (1202)
+..++.++|.+ ..+|.++ +.+..||||||||++|||||+.+|+||+|||||||||+.++..+++.+ ++..
T Consensus 130 ~~~~~~~~l~~~l~~~~~~~~~~~~-~~~~~LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~ll~~~~- 207 (290)
T 2bbs_A 130 RSVIKACQLEEDISKFAEKDNIVLG-EGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLM- 207 (290)
T ss_dssp HHHHHHTTCHHHHHTSTTGGGCBC-----CCCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHCCCCCT-
T ss_pred HHHHHHhChHHHHHhccccccchhc-CccCcCCHHHHHHHHHHHHHHCCCCEEEEECCcccCCHHHHHHHHHHHHHHhh-
Confidence 34455555543 3456676 456789999999999999999999999999999999999999999874 3432
Q ss_pred hCCCEEEEEecCCChHHHhhhcceEEecCCcEEEEcCcchHHH
Q 000979 120 INSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLE 162 (1202)
Q Consensus 120 ~~~tTiIiaihQp~~s~~~~fD~IvvL~~G~vvy~G~~~el~~ 162 (1202)
.++|||++.|.+ +..+.+|+|++|++|++++.|+++++.+
T Consensus 208 -~~~tviivtHd~--~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 247 (290)
T 2bbs_A 208 -ANKTRILVTSKM--EHLKKADKILILHEGSSYFYGTFSELQN 247 (290)
T ss_dssp -TTSEEEEECCCH--HHHHHSSEEEEEETTEEEEEECHHHHHH
T ss_pred -CCCEEEEEecCH--HHHHcCCEEEEEECCeEEEeCCHHHHhh
Confidence 467888887765 4456799999999999999999998853
|
| >2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A | Back alignment and structure |
|---|
Probab=99.69 E-value=1.1e-16 Score=200.39 Aligned_cols=135 Identities=21% Similarity=0.316 Sum_probs=108.6
Q ss_pred CCCCHHHHHHHHHHccCCCC---CCH---HHHHHHHHHHHHHcCCCcc-ccccccCCCCCCCCHHHHHHHHHHHHHhhCC
Q 000979 702 PFVTIYESLLFSAWLRLSPE---VDS---ETRKMFIDEVMELVELNPL-RQSLVGLPGVSGLSTEQRKRLTIAVELVANP 774 (1202)
Q Consensus 702 ~~lTv~e~l~~~~~~~~~~~---~~~---~~~~~~~~~~l~~l~l~~~-~~~~~~~~~~~~LSgGqrqRv~ia~aL~~~p 774 (1202)
..+||.|++.|...+.++.. ... ++..+++ +.++.+||... .|+.+ ..|||||||||+||++|..+|
T Consensus 450 ~~ltV~e~~~f~e~l~l~~~~~~i~~~~~~ei~~Rl-~~L~~vGL~~l~ldR~~-----~tLSGGEkQRV~LA~aL~~~~ 523 (972)
T 2r6f_A 450 TAMSVTEALAFFDGLELTEKEAQIARLILREIRDRL-GFLQNVGLDYLTLSRSA-----GTLSGGEAQRIRLATQIGSRL 523 (972)
T ss_dssp HTSBHHHHHHHHHHCCCCHHHHHHSHHHHHHHHHHH-HHHHHHTCTTSBSSSBG-----GGCCHHHHHHHHHHHHHTTCC
T ss_pred hhCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH-HHhhhCCCCccccCCcc-----ccCCHHHHHHHHHHHHHhhCC
Confidence 35899999999766643221 000 2233444 45788999764 45553 579999999999999999985
Q ss_pred --CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEe-----cCCEEEEEcCCCcc
Q 000979 775 --SIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK-----RGGQEIYVGPLGRH 844 (1202)
Q Consensus 775 --~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~-----~gG~~~~~G~~~~~ 844 (1202)
++|+|||||+|||+.....++++|+++++.|.|||+++|+++ ..+.+|+|++|. +||++++.|++++.
T Consensus 524 ~~~llILDEPTagLdp~~~~~L~~~L~~Lr~~G~TVIvVeHdl~--~i~~ADrIi~LgpgaG~~gG~iv~~G~~~e~ 598 (972)
T 2r6f_A 524 TGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHDED--TMLAADYLIDIGPGAGIHGGEVVAAGTPEEV 598 (972)
T ss_dssp CSCEEEEECTTTTCCGGGHHHHHHHHHHHHTTTCEEEEECCCHH--HHHSCSEEEEECSSSGGGCCSEEEEECTTTT
T ss_pred CCCEEEEeCcccCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH--HHHhCCEEEEeCCCccCCCCEEEEecCHHHH
Confidence 999999999999999999999999999888999999999974 456899999993 57999999998753
|
| >1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B* | Back alignment and structure |
|---|
Probab=99.68 E-value=9.9e-17 Score=159.98 Aligned_cols=76 Identities=22% Similarity=0.315 Sum_probs=69.8
Q ss_pred CCCCCHHHHHHHHHH------HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceE
Q 000979 753 VSGLSTEQRKRLTIA------VELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDEL 826 (1202)
Q Consensus 753 ~~~LSgGqrqRv~ia------~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v 826 (1202)
+..||||||||++|| |+|+.+|++|+|||||+|||+.++..+.+.|+++.++|+|||++||++ ++.+.+|++
T Consensus 55 ~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~--~~~~~~d~i 132 (148)
T 1f2t_B 55 LTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDE--ELKDAADHV 132 (148)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGGGSSEEEEEESCG--GGGGGCSEE
T ss_pred hhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHccCCEEEEEEChH--HHHHhCCEE
Confidence 457999999999876 899999999999999999999999999999999877799999999997 467899999
Q ss_pred EEEe
Q 000979 827 FLMK 830 (1202)
Q Consensus 827 ~~l~ 830 (1202)
++|.
T Consensus 133 i~l~ 136 (148)
T 1f2t_B 133 IRIS 136 (148)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9994
|
| >3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=1.1e-18 Score=197.18 Aligned_cols=157 Identities=10% Similarity=-0.009 Sum_probs=108.1
Q ss_pred EeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCCcccccceEEEeecCCCCCCCCCHHHHHHHHHHccC
Q 000979 639 FRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRL 718 (1202)
Q Consensus 639 i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~ 718 (1202)
+++|+++||+||||||||||+++|+|...+. +|. +.+++|+|++.+++. |++||+.+... +
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~gll~~~--------~G~--------~~v~~v~qd~~~~~~-t~~e~~~~~~~-~- 147 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQALLARW--------DHH--------PRVDLVTTDGFLYPN-AELQRRNLMHR-K- 147 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHHHHHTS--------TTC--------CCEEEEEGGGGBCCH-HHHHHTTCTTC-T-
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHhhcccc--------CCC--------CeEEEEecCccCCcc-cHHHHHHHHHh-c-
Confidence 8999999999999999999999999965421 121 357999999999888 99999854211 1
Q ss_pred CCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHH
Q 000979 719 SPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV 798 (1202)
Q Consensus 719 ~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l 798 (1202)
+.......+.+.+.++.++ .+..+..+ ..|||||+||+++|++++.+|+|||||||++.+|+.. ..+
T Consensus 148 --g~~~~~d~~~~~~~L~~l~-~~~~~~~~-----~~lS~G~~qRv~~a~al~~~p~ilIlDep~~~~d~~~-----~~l 214 (312)
T 3aez_A 148 --GFPESYNRRALMRFVTSVK-SGSDYACA-----PVYSHLHYDIIPGAEQVVRHPDILILEGLNVLQTGPT-----LMV 214 (312)
T ss_dssp --TSGGGBCHHHHHHHHHHHH-TTCSCEEE-----EEEETTTTEEEEEEEEEECSCSEEEEECTTTTCCCSS-----CCG
T ss_pred --CCChHHHHHHHHHHHHHhC-CCcccCCc-----ccCChhhhhhhhhHHHhccCCCEEEECCccccCCcch-----HHH
Confidence 1111112334677888877 44433432 4699999999999999999999999999999998621 011
Q ss_pred HHHHhCCCEEEEEecCCCHHHHHhcceEEEEe
Q 000979 799 RNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 830 (1202)
Q Consensus 799 ~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~ 830 (1202)
.++ -+ .+|++.|+.+.......+|.+.+.
T Consensus 215 ~~~--~D-~~I~V~a~~~~~~~R~i~R~~~~r 243 (312)
T 3aez_A 215 SDL--FD-FSLYVDARIEDIEQWYVSRFLAMR 243 (312)
T ss_dssp GGG--CS-EEEEEEECHHHHHHHHHHHHHHHT
T ss_pred HHh--cC-cEEEEECCHHHHHHHHHHHHHHHH
Confidence 111 12 346666654433334455555543
|
| >3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=99.67 E-value=7.2e-17 Score=203.98 Aligned_cols=111 Identities=23% Similarity=0.278 Sum_probs=93.1
Q ss_pred HHHHHHHHHhCCcccccccccCCcccccCccccchhhHHHHHhcCC---eEeeeeCCCccccHHHHHHHHHHHHHHhHhC
Q 000979 45 VITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPA---LALFMDEISTGLDSSTTFQIVNCLRQNIHIN 121 (1202)
Q Consensus 45 ~~v~~il~~lgL~~~~dT~VG~~~~~gLSGGQKqRvsIAraLv~~P---~ILlLDEpTSGLDs~sa~~vv~~L~~~a~~~ 121 (1202)
..+.++|+.+||.. ..+| .....|||||||||+|||||+++| +||+|||||||||..+...+++.|++++..
T Consensus 783 ~~~~~~L~~vGL~~---~~lg-q~~~~LSGGErQRV~LAraL~~~p~~p~LLILDEPTsGLD~~~~~~L~~lL~~L~~~- 857 (916)
T 3pih_A 783 KRTLQVLHDVGLGY---VKLG-QPATTLSGGEAQRIKLASELRKRDTGRTLYILDEPTVGLHFEDVRKLVEVLHRLVDR- 857 (916)
T ss_dssp HHHHHHHHHTTGGG---SBTT-CCSTTCCHHHHHHHHHHHHHTSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHT-
T ss_pred HHHHHHHHHcCCch---hhcc-CCccCCCHHHHHHHHHHHHHhhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhc-
Confidence 34667899999975 2344 445689999999999999999865 799999999999999999999999998754
Q ss_pred CCEEEEEecCCChHHHhhhcceEEe------cCCcEEEEcCcchHHH
Q 000979 122 SGTAVISLLQPAPETYDLFDDIILL------SDGQIVYQGPRELVLE 162 (1202)
Q Consensus 122 ~tTiIiaihQp~~s~~~~fD~IvvL------~~G~vvy~G~~~el~~ 162 (1202)
|.|||+.. |.+++++.+|+|++| .+|+++++|+++++.+
T Consensus 858 G~TVIvI~--HdL~~i~~ADrIivLgp~gg~~~G~Iv~~Gtpeel~~ 902 (916)
T 3pih_A 858 GNTVIVIE--HNLDVIKNADHIIDLGPEGGKEGGYIVATGTPEEIAK 902 (916)
T ss_dssp TCEEEEEC--CCHHHHTTCSEEEEEESSSGGGCCEEEEEESHHHHHS
T ss_pred CCEEEEEe--CCHHHHHhCCEEEEecCCCCCCCCEEEEEcCHHHHHh
Confidence 55555443 666888999999999 8999999999999973
|
| >3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=9.7e-17 Score=203.90 Aligned_cols=150 Identities=15% Similarity=0.102 Sum_probs=109.2
Q ss_pred ceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHH--------hCCCCCceEEEEEEEcCccCCcccccceEEEeecCCC
Q 000979 628 KLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVL--------AGRKTGGYITGNITISGYPKKQETFARISGYCEQNDI 699 (1202)
Q Consensus 628 ~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l--------~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~ 699 (1202)
.+.+++|+++++++|++++|+||||||||||||++ .|...+ ..+. .++.+ +.
T Consensus 648 ~~~v~ndisl~~~~g~i~~ItGpNGsGKSTlLr~ial~~~~aq~G~~vp--a~~~---------------~~~~~---d~ 707 (934)
T 3thx_A 648 IAFIPNDVYFEKDKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVP--CESA---------------EVSIV---DC 707 (934)
T ss_dssp CCCCCEEEEEETTTBCEEEEECCTTSSHHHHHHHHHHHHHHHHHTCCBS--EEEE---------------EEECC---SE
T ss_pred ceeecccceeecCCCeEEEEECCCCCCHHHHHHHHHHHHHHHhcCCccc--cccc---------------cchHH---HH
Confidence 45689999999999999999999999999999999 443221 1110 01110 00
Q ss_pred CCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHH--hhCCCEE
Q 000979 700 HSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVEL--VANPSII 777 (1202)
Q Consensus 700 ~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~aL--~~~p~il 777 (1202)
++..+|+. |.. .+++|+|++++..+|++| +.+|+++
T Consensus 708 ----------------------------------i~~~ig~~---d~l-----~~~lStf~~e~~~~a~il~~a~~~sLl 745 (934)
T 3thx_A 708 ----------------------------------ILARVGAG---DSQ-----LKGVSTFMAEMLETASILRSATKDSLI 745 (934)
T ss_dssp ----------------------------------EEEECC-----------------CHHHHHHHHHHHHHHHCCTTCEE
T ss_pred ----------------------------------HHHhcCch---hhH-----HHhHhhhHHHHHHHHHHHHhccCCcEE
Confidence 00111111 111 135888888888888888 9999999
Q ss_pred EEeCCCCCCCHHHHHHH-HHHHHHHHh-CCCEEEEEecCCCHHHHHhcceEEEEecCCEEEEEcCCC
Q 000979 778 FMDEPTSGLDARAAAIV-MRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLG 842 (1202)
Q Consensus 778 llDEPtsgLD~~~~~~v-~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G~~~ 842 (1202)
||||||+|||+.....+ +.+++.+++ .|.|+|++||+. ++.+++|++..+.+ |++...++.+
T Consensus 746 LLDEp~~GlD~~~~~~i~~~il~~l~~~~g~~vl~aTH~~--el~~lad~~~~v~n-g~v~~~~~~~ 809 (934)
T 3thx_A 746 IIDELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHFH--ELTALANQIPTVNN-LHVTALTTEE 809 (934)
T ss_dssp EEESCSCSSCHHHHHHHHHHHHHHHHHTTCCEEEEEESCG--GGGGGGGTCTTEEE-EEEEEEEETT
T ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEcCcH--HHHHHhcccceeEe-eEEEEEecCC
Confidence 99999999999988888 667777776 499999999995 46789999999985 7999888764
|
| >1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=6.9e-17 Score=197.00 Aligned_cols=156 Identities=17% Similarity=0.160 Sum_probs=115.5
Q ss_pred eEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCCcccccceEEEeecCCCCCCCCCHHHHHHHHHH
Q 000979 636 SGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESLLFSAW 715 (1202)
Q Consensus 636 s~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~ 715 (1202)
++.+++|++++|+||||||||||++.++|...+. |+ +.+.+++|++. .++.++..
T Consensus 275 ~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~---G~--------------~vi~~~~ee~~----~~l~~~~~---- 329 (525)
T 1tf7_A 275 GGGFFKDSIILATGATGTGKTLLVSRFVENACAN---KE--------------RAILFAYEESR----AQLLRNAY---- 329 (525)
T ss_dssp TSSEESSCEEEEEECTTSSHHHHHHHHHHHHHTT---TC--------------CEEEEESSSCH----HHHHHHHH----
T ss_pred CCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHhC---CC--------------CEEEEEEeCCH----HHHHHHHH----
Confidence 4589999999999999999999999999864311 11 23456666531 12223221
Q ss_pred ccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHH-----H
Q 000979 716 LRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR-----A 790 (1202)
Q Consensus 716 ~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~-----~ 790 (1202)
+. ..+. ++ +...|+.+..+.. +..|||||+||+++|+++..+|++|++| ||+|||.. .
T Consensus 330 -~~--g~~~-------~~-~~~~g~~~~~~~~-----p~~LS~g~~q~~~~a~~l~~~p~llilD-p~~~Ld~~~~~~~~ 392 (525)
T 1tf7_A 330 -SW--GMDF-------EE-MERQNLLKIVCAY-----PESAGLEDHLQIIKSEINDFKPARIAID-SLSALARGVSNNAF 392 (525)
T ss_dssp -TT--SCCH-------HH-HHHTTSEEECCCC-----GGGSCHHHHHHHHHHHHHTTCCSEEEEE-CHHHHTSSSCHHHH
T ss_pred -Hc--CCCH-------HH-HHhCCCEEEEEec-----cccCCHHHHHHHHHHHHHhhCCCEEEEc-ChHHHHhhCChHHH
Confidence 11 1221 12 2234555544443 3469999999999999999999999999 99999999 9
Q ss_pred HHHHHHHHHHHHhCCCEEEEEecCCC---------HHHHHhcceEEEEecCCE
Q 000979 791 AAIVMRTVRNTVDTGRTVVCTIHQPS---------IDIFEAFDELFLMKRGGQ 834 (1202)
Q Consensus 791 ~~~v~~~l~~~~~~g~tvi~~~H~~~---------~~~~~~~d~v~~l~~gG~ 834 (1202)
+..+.++++.+++.|.|||+++|+.. ..+..++|++++|.+ |+
T Consensus 393 ~~~i~~ll~~l~~~g~tvilvsh~~~~~~~~~~~~~~l~~~~D~vi~L~~-ge 444 (525)
T 1tf7_A 393 RQFVIGVTGYAKQEEITGLFTNTSDQFMGAHSITDSHISTITDTIILLQY-VE 444 (525)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEEECSSSSCCCSSCSSCCTTTCSEEEEEEE-EE
T ss_pred HHHHHHHHHHHHhCCCEEEEEECcccccCcccccCcccceeeeEEEEEEE-EE
Confidence 99999999999888999999999971 245678999999986 44
|
| >2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B* | Back alignment and structure |
|---|
Probab=99.67 E-value=9.4e-18 Score=216.05 Aligned_cols=158 Identities=17% Similarity=0.130 Sum_probs=112.3
Q ss_pred eEEeecceEEEeC-------CeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCCcccccceEEEeecCCCCC
Q 000979 629 LVLLNGVSGAFRP-------GVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHS 701 (1202)
Q Consensus 629 ~~iL~~vs~~i~~-------Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~ 701 (1202)
..+++|+++.+++ |++++|+||||||||||||+| |.... .++..+||||+..
T Consensus 769 ~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~~------------------~aqiG~~Vpq~~~-- 827 (1022)
T 2o8b_B 769 DFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLAV------------------MAQMGCYVPAEVC-- 827 (1022)
T ss_dssp CCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHHH------------------HHTTTCCEESSEE--
T ss_pred ceEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHHH------------------HhheeEEeccCcC--
Confidence 4689999999987 999999999999999999999 86531 1122238999752
Q ss_pred CCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeC
Q 000979 702 PFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDE 781 (1202)
Q Consensus 702 ~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~illlDE 781 (1202)
.+||.|++.. + +|+.+..+. +.+.+|++++ ++++|++++++|+++||||
T Consensus 828 -~l~v~d~I~~----r--------------------ig~~d~~~~-----~~stf~~em~-~~a~al~la~~~sLlLLDE 876 (1022)
T 2o8b_B 828 -RLTPIDRVFT----R--------------------LGASDRIMS-----GESTFFVELS-ETASILMHATAHSLVLVDE 876 (1022)
T ss_dssp -EECCCSBEEE----E--------------------CC--------------CHHHHHHH-HHHHHHHHCCTTCEEEEEC
T ss_pred -CCCHHHHHHH----H--------------------cCCHHHHhh-----chhhhHHHHH-HHHHHHHhCCCCcEEEEEC
Confidence 3555554410 1 111111111 1234777666 5999999999999999999
Q ss_pred CCCCCCHHHH-HHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhcceEEEEecCCEEE--EEcCC
Q 000979 782 PTSGLDARAA-AIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEI--YVGPL 841 (1202)
Q Consensus 782 PtsgLD~~~~-~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~--~~G~~ 841 (1202)
||+|+|+... ..++..|+.++++ |.++|++||+++ .+...+|++.++. |++. +.|++
T Consensus 877 p~~Gtd~~dg~~~~~~il~~L~~~~g~~vl~~TH~~e-l~~~~~d~~~v~~--g~~~~~~~~~~ 937 (1022)
T 2o8b_B 877 LGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYHS-LVEDYSQNVAVRL--GHMACMVENEC 937 (1022)
T ss_dssp TTTTSCHHHHHHHHHHHHHHHHHTSCCEEEEECCCHH-HHHHTSSCSSEEE--EEEEEC-----
T ss_pred CCCCCChHHHHHHHHHHHHHHHhcCCCEEEEEeCCHH-HHHHhCCcceeec--CeEEEEEecCc
Confidence 9999999884 5578899998876 999999999975 3556789988874 6777 45554
|
| >2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=3.5e-18 Score=187.63 Aligned_cols=155 Identities=9% Similarity=0.001 Sum_probs=97.8
Q ss_pred CceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCCcccccceEEEeecCCCCCCCCCH
Q 000979 627 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTI 706 (1202)
Q Consensus 627 ~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~lTv 706 (1202)
+++.+|+|+||++++|+++||+||||||||||+++|+|.. |.+.++ ..++.++|++|++ +++.+|+
T Consensus 10 ~~~~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~l------G~~~~~-------~~~~~i~~v~~d~-~~~~l~~ 75 (245)
T 2jeo_A 10 GVDLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELL------GQNEVE-------QRQRKVVILSQDR-FYKVLTA 75 (245)
T ss_dssp -------------CCSEEEEEECSTTSSHHHHHHHHHHHH------TGGGSC-------GGGCSEEEEEGGG-GBCCCCH
T ss_pred CCceeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHh------chhccc-------ccCCceEEEeCCc-CccccCH
Confidence 4567899999999999999999999999999999999853 111122 2356789999985 6778999
Q ss_pred HHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCC
Q 000979 707 YESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 786 (1202)
Q Consensus 707 ~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgL 786 (1202)
.|++.+......... ......+.+.+.++.+ .+..+.. ...+|+||+||+++ ++++.+|+++++|||....
T Consensus 76 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~L~~l--~~~~~~~-----~~~ls~g~~~r~~~-~~~~~~~~~lilDg~~~~~ 146 (245)
T 2jeo_A 76 EQKAKALKGQYNFDH-PDAFDNDLMHRTLKNI--VEGKTVE-----VPTYDFVTHSRLPE-TTVVYPADVVLFEGILVFY 146 (245)
T ss_dssp HHHHHHHTTCCCTTS-GGGBCHHHHHHHHHHH--HTTCCEE-----ECCEETTTTEECSS-CEEECCCSEEEEECTTTTT
T ss_pred hHhhhhhccCCCCCC-cccccHHHHHHHHHHH--HCCCCee-----cccccccccCccCc-eEEecCCCEEEEeCccccc
Confidence 999876543211110 0110112233444433 2333333 24699999999988 5888899999999998888
Q ss_pred CHHHHHHHHHHHHHHHhCCCEEEEEecC
Q 000979 787 DARAAAIVMRTVRNTVDTGRTVVCTIHQ 814 (1202)
Q Consensus 787 D~~~~~~v~~~l~~~~~~g~tvi~~~H~ 814 (1202)
|.. +.++ .+.+|++++|+
T Consensus 147 ~~~--------l~~~--~~~~i~v~th~ 164 (245)
T 2jeo_A 147 SQE--------IRDM--FHLRLFVDTDS 164 (245)
T ss_dssp SHH--------HHTT--CSEEEEEECCH
T ss_pred cHH--------HHHh--cCeEEEEECCH
Confidence 764 2222 37899999996
|
| >1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=3.5e-19 Score=217.30 Aligned_cols=167 Identities=20% Similarity=0.134 Sum_probs=113.9
Q ss_pred ceEEeecceE-EEeCCeEEEEEcCCCCCHHHHHHH--HhCCCCCceEEEEEEEcCccCCc--ccccceEEEeecCCCCCC
Q 000979 628 KLVLLNGVSG-AFRPGVLTALMGVSGAGKTTLMDV--LAGRKTGGYITGNITISGYPKKQ--ETFARISGYCEQNDIHSP 702 (1202)
Q Consensus 628 ~~~iL~~vs~-~i~~Ge~~al~G~sGaGKSTLl~~--l~g~~~~~~~~G~i~~~g~~~~~--~~~~~~~~~v~q~~~~~~ 702 (1202)
+.++|++||+ .+++||+++|+||||||||||+++ ++|...++ +|.|.++|.+... ...++.+||++|++...+
T Consensus 24 g~~~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~--~g~i~v~g~~~~~~~~~~~~~~g~~~q~~~~~~ 101 (525)
T 1tf7_A 24 MIEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFD--EPGVFVTFEETPQDIIKNARSFGWDLAKLVDEG 101 (525)
T ss_dssp CCTTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHC--CCEEEEESSSCHHHHHHHHGGGTCCHHHHHHTT
T ss_pred CchhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCC--CCEEEEEEeCCHHHHHHHHHHcCCChHHhhccC
Confidence 3457999999 999999999999999999999999 67875532 6899999987422 122345789988643211
Q ss_pred CCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHh-hCCCEEEEeC
Q 000979 703 FVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELV-ANPSIIFMDE 781 (1202)
Q Consensus 703 ~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~aL~-~~p~illlDE 781 (1202)
++.+ .... . ..+ ..++++.+++.+ +.-.+..+|. .+|++++|||
T Consensus 102 ------~l~~---~~~~-~-~~~-----~~~~l~~~~l~~-------------------~~~~~~~~LS~g~~~~lilDe 146 (525)
T 1tf7_A 102 ------KLFI---LDAS-P-DPE-----GQEVVGGFDLSA-------------------LIERINYAIQKYRARRVSIDS 146 (525)
T ss_dssp ------SEEE---EECC-C-CSS-----CCSCCSSHHHHH-------------------HHHHHHHHHHHHTCSEEEEEC
T ss_pred ------cEEE---EecC-c-ccc-----hhhhhcccCHHH-------------------HHHHHHHHHHHcCCCEEEECC
Confidence 1100 0000 0 000 001111112211 2333344442 4688999999
Q ss_pred CCC-----CCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHH--------HHHhcceEEEEec
Q 000979 782 PTS-----GLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSID--------IFEAFDELFLMKR 831 (1202)
Q Consensus 782 Pts-----gLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~--------~~~~~d~v~~l~~ 831 (1202)
||+ +||+..++.+.++++++++.|.|||+++|+++.. ...+||++++|.+
T Consensus 147 ~t~~~~~~~lD~~~~~~l~~ll~~l~~~g~tvl~itH~~~~~~~~~~~~i~~~laD~vi~L~~ 209 (525)
T 1tf7_A 147 VTSVFQQYDASSVVRRELFRLVARLKQIGATTVMTTERIEEYGPIARYGVEEFVSDNVVILRN 209 (525)
T ss_dssp STTTSTTTCCHHHHHHHHHHHHHHHHHHTCEEEEEEECSSSSSCSSTTSCHHHHCSEEEEEEE
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHCCCEEEEEecCCCCccccccccceeeeeeEEEEEEE
Confidence 998 4699999999999999987899999999998731 2345999999986
|
| >2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=5e-18 Score=194.21 Aligned_cols=188 Identities=14% Similarity=0.152 Sum_probs=129.7
Q ss_pred eEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCC
Q 000979 604 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 683 (1202)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 683 (1202)
++.++++..|.. +..+|+++ +.+.+||+++|+||||||||||+++|+|...++ .|.+.+.|++..
T Consensus 46 i~~~~l~~~~~t------------g~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~--~g~i~~~G~~~~ 110 (347)
T 2obl_A 46 LLRQVIDQPFIL------------GVRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGASAD--IIVLALIGERGR 110 (347)
T ss_dssp TTCCCCCSEECC------------SCHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSCCS--EEEEEEESCCHH
T ss_pred eeecccceecCC------------CCEEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCCCC--EEEEEEecccHH
Confidence 556677666531 24579999 999999999999999999999999999987643 688888886521
Q ss_pred c----------ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCC
Q 000979 684 Q----------ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGV 753 (1202)
Q Consensus 684 ~----------~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~ 753 (1202)
+ ..+++.+.++.|.+. ...+.+.-... ...+.+.....+ .+.... . ..+
T Consensus 111 ev~~~i~~~~~~~~~~~v~~~~~~~~-----~~~~r~~~~~~------------~~~~ae~~~~~~-~~vl~~-l--d~~ 169 (347)
T 2obl_A 111 EVNEFLALLPQSTLSKCVLVVTTSDR-----PALERMKAAFT------------ATTIAEYFRDQG-KNVLLM-M--DSV 169 (347)
T ss_dssp HHHHHHTTSCHHHHTTEEEEEECTTS-----CHHHHHHHHHH------------HHHHHHHHHTTT-CEEEEE-E--ETH
T ss_pred HHHHHHHhhhhhhhhceEEEEECCCC-----CHHHHHHHHHH------------HHHHHHHHHhcc-ccHHHH-H--hhH
Confidence 1 113456778887532 22222211100 000111111111 010000 0 013
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh--CCC-----EEEEEecCCCHHHHHhcceE
Q 000979 754 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD--TGR-----TVVCTIHQPSIDIFEAFDEL 826 (1202)
Q Consensus 754 ~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~--~g~-----tvi~~~H~~~~~~~~~~d~v 826 (1202)
..||+|| ||+++| +.+|++ |+|||+.....+.++++++.+ .|. ||++++||++ ...+|++
T Consensus 170 ~~lS~g~-r~v~la---l~~p~~------t~Gldp~~~~~l~~ller~~~~~~GsiT~~~tVl~~thdl~---~~i~d~v 236 (347)
T 2obl_A 170 TRYARAA-RDVGLA---SGEPDV------RGGFPPSVFSSLPKLLERAGPAPKGSITAIYTVLLESDNVN---DPIGDEV 236 (347)
T ss_dssp HHHHHHH-HHHHHH---TTCCCC------BTTBCHHHHHHHHHHHTTCEECSSSEEEEEEEEECCSSCCC---CHHHHHH
T ss_pred HHHHHHH-HHHHHH---cCCCCc------ccCCCHHHHHHHHHHHHHHhCCCCCCeeeEEEEEEeCCCCC---Chhhhhe
Confidence 4699999 899999 688887 999999999999999999864 477 9999999987 3678999
Q ss_pred EEEecCCEEEEEcCC
Q 000979 827 FLMKRGGQEIYVGPL 841 (1202)
Q Consensus 827 ~~l~~gG~~~~~G~~ 841 (1202)
.++.+ |+++..|++
T Consensus 237 ~~i~d-G~Ivl~~~l 250 (347)
T 2obl_A 237 RSILD-GHIVLTREL 250 (347)
T ss_dssp HHHCS-EEEEBCHHH
T ss_pred EEeeC-cEEEEeCCH
Confidence 99985 899998875
|
| >2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.63 E-value=6e-17 Score=178.37 Aligned_cols=131 Identities=18% Similarity=0.249 Sum_probs=96.4
Q ss_pred EeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceE-EEEEEEcCccCCcccccceEEEeecCCCCCCCCCHHHH
Q 000979 631 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYI-TGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYES 709 (1202)
Q Consensus 631 iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~-~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~lTv~e~ 709 (1202)
+|+++| +++|++++|+||||||||||+++|+|... +. +|+|.++|.++... .+...++++|.
T Consensus 16 vl~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~~--~~~~G~I~~~g~~i~~~-~~~~~~~v~q~------------ 78 (261)
T 2eyu_A 16 KVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYIN--QTKSYHIITIEDPIEYV-FKHKKSIVNQR------------ 78 (261)
T ss_dssp HHHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHHHH--HHCCCEEEEEESSCCSC-CCCSSSEEEEE------------
T ss_pred HHHHHh--hCCCCEEEEECCCCccHHHHHHHHHHhCC--CCCCCEEEEcCCcceee-cCCcceeeeHH------------
Confidence 689999 89999999999999999999999999754 33 68998888764210 01111112110
Q ss_pred HHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHH
Q 000979 710 LLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 789 (1202)
Q Consensus 710 l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~ 789 (1202)
.+++.. ..+ |++||++|..+|++|++|||| |+.
T Consensus 79 ---------------------------~~gl~~-----------~~l------~~~la~aL~~~p~illlDEp~---D~~ 111 (261)
T 2eyu_A 79 ---------------------------EVGEDT-----------KSF------ADALRAALREDPDVIFVGEMR---DLE 111 (261)
T ss_dssp ---------------------------EBTTTB-----------SCH------HHHHHHHHHHCCSEEEESCCC---SHH
T ss_pred ---------------------------HhCCCH-----------HHH------HHHHHHHHhhCCCEEEeCCCC---CHH
Confidence 122211 123 899999999999999999999 988
Q ss_pred HHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEec
Q 000979 790 AAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKR 831 (1202)
Q Consensus 790 ~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~ 831 (1202)
+...+ ++. ++.|.+|++++|+.+ ..+.+||++.|..
T Consensus 112 ~~~~~---l~~-~~~g~~vl~t~H~~~--~~~~~dri~~l~~ 147 (261)
T 2eyu_A 112 TVETA---LRA-AETGHLVFGTLHTNT--AIDTIHRIVDIFP 147 (261)
T ss_dssp HHHHH---HHH-HHTTCEEEEEECCSS--HHHHHHHHHHTSC
T ss_pred HHHHH---HHH-HccCCEEEEEeCcch--HHHHHHHHhhhcC
Confidence 86544 433 356999999999976 5688999988853
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.62 E-value=1.2e-16 Score=170.10 Aligned_cols=98 Identities=13% Similarity=0.168 Sum_probs=82.3
Q ss_pred hHHHHHHHHHhCCcccccccccCCcccccCccccchhhHHHHHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHhHhCCC
Q 000979 44 NVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSG 123 (1202)
Q Consensus 44 ~~~v~~il~~lgL~~~~dT~VG~~~~~gLSGGQKqRvsIAraLv~~P~ILlLDEpTSGLDs~sa~~vv~~L~~~a~~~~t 123 (1202)
++.++++++.+||.+. +..+ ..||||||||++|||||+.+|++|+|||||||||+.++..+++.++++.+ .++
T Consensus 112 ~~~~~~~l~~~gl~~~-~~~~-----~~LSgGqkqrv~laraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~-~g~ 184 (214)
T 1sgw_A 112 KNEIMDALESVEVLDL-KKKL-----GELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILK-EKG 184 (214)
T ss_dssp HHHHHHHHHHTTCCCT-TSBG-----GGSCHHHHHHHHHHHHTTSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHH-HHS
T ss_pred HHHHHHHHHHcCCCcC-CCCh-----hhCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHHh-CCC
Confidence 4568889999999876 5554 58999999999999999999999999999999999999999999998764 478
Q ss_pred EEEEEecCCChHHHhhhcceEEecCCc
Q 000979 124 TAVISLLQPAPETYDLFDDIILLSDGQ 150 (1202)
Q Consensus 124 TiIiaihQp~~s~~~~fD~IvvL~~G~ 150 (1202)
|||++.|.+. .+...+|+|++++ |+
T Consensus 185 tiiivtHd~~-~~~~~~d~v~~~~-~~ 209 (214)
T 1sgw_A 185 IVIISSREEL-SYCDVNENLHKYS-TK 209 (214)
T ss_dssp EEEEEESSCC-TTSSEEEEGGGGB-C-
T ss_pred EEEEEeCCHH-HHHHhCCEEEEeC-Cc
Confidence 8998888765 4566677776553 44
|
| >3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B* | Back alignment and structure |
|---|
Probab=99.61 E-value=1.9e-16 Score=200.64 Aligned_cols=145 Identities=14% Similarity=0.124 Sum_probs=99.0
Q ss_pred ceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCCcccccceEEEeecCCCCCCCCCHH
Q 000979 628 KLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIY 707 (1202)
Q Consensus 628 ~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~lTv~ 707 (1202)
++.+++|||+++++|++++|+||||||||||||++++...... .|...... ...++.+ +.++..+.+.
T Consensus 659 ~~~V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i~~~aq-------~g~~vpa~--~~~i~~~---d~i~~~ig~~ 726 (918)
T 3thx_B 659 DQYVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVALITIMAQ-------IGSYVPAE--EATIGIV---DGIFTRMGAA 726 (918)
T ss_dssp SSSCCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHHHHHHHH-------HTCCBSSS--EEEEECC---SEEEEEC---
T ss_pred CceecccccccCCCCeEEEEECCCCCchHHHHHHHHHHHHHhh-------cCccccch--hhhhhHH---HHHHHhCChH
Confidence 4678999999999999999999999999999999976311000 01001000 0111111 1111111111
Q ss_pred HHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCC
Q 000979 708 ESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 787 (1202)
Q Consensus 708 e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD 787 (1202)
+++ .. +.+.+|+|++|++.|+++ +.+|+++||||||+|||
T Consensus 727 d~l----------------------------------~~-----~~stfs~em~~~~~il~~-a~~p~LlLLDEP~~GlD 766 (918)
T 3thx_B 727 DNI----------------------------------YK-----GRSTFMEELTDTAEIIRK-ATSQSLVILDELGRGTS 766 (918)
T ss_dssp ----------------------------------------------CCHHHHHHHHHHHHHH-CCTTCEEEEESTTTTSC
T ss_pred HHH----------------------------------HH-----hHHHhhHHHHHHHHHHHh-ccCCCEEEEeCCCCCCC
Confidence 111 11 124689999999999999 89999999999999999
Q ss_pred HHHHHHHH-HHHHHHHh-CCCEEEEEecCCCHHHHHhcceE
Q 000979 788 ARAAAIVM-RTVRNTVD-TGRTVVCTIHQPSIDIFEAFDEL 826 (1202)
Q Consensus 788 ~~~~~~v~-~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~v 826 (1202)
+.....+. .+++.+++ .|.|+|++||+++ +.+++|+.
T Consensus 767 ~~~~~~i~~~il~~L~~~~g~tvl~vTH~~e--l~~l~~~~ 805 (918)
T 3thx_B 767 THDGIAIAYATLEYFIRDVKSLTLFVTHYPP--VCELEKNY 805 (918)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCEEEEECSCGG--GGGHHHHT
T ss_pred HHHHHHHHHHHHHHHHHhcCCeEEEEeCcHH--HHHHHhhc
Confidence 99998887 77777765 5999999999964 55666654
|
| >1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B* | Back alignment and structure |
|---|
Probab=99.60 E-value=9.6e-16 Score=152.84 Aligned_cols=81 Identities=17% Similarity=0.287 Sum_probs=70.1
Q ss_pred CcccccCccccchhhHH------HHHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHhHhCCCEEEEEecCCChHHHhhh
Q 000979 67 EMIRGISGGQKKRVTTG------EMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLF 140 (1202)
Q Consensus 67 ~~~~gLSGGQKqRvsIA------raLv~~P~ILlLDEpTSGLDs~sa~~vv~~L~~~a~~~~tTiIiaihQp~~s~~~~f 140 (1202)
.....||||||||++|| |+|+.+|++|+|||||+|||..+...+.+.++++.. .++|||++.|++ +..+.+
T Consensus 53 ~~~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~~tiiivsH~~--~~~~~~ 129 (148)
T 1f2t_B 53 RPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLK-KIPQVILVSHDE--ELKDAA 129 (148)
T ss_dssp ECGGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGG-GSSEEEEEESCG--GGGGGC
T ss_pred CChhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHc-cCCEEEEEEChH--HHHHhC
Confidence 34578999999999876 899999999999999999999999999999998654 478888888876 567899
Q ss_pred cceEEe--cCCc
Q 000979 141 DDIILL--SDGQ 150 (1202)
Q Consensus 141 D~IvvL--~~G~ 150 (1202)
|++++| .+|.
T Consensus 130 d~ii~l~~~~g~ 141 (148)
T 1f2t_B 130 DHVIRISLENGS 141 (148)
T ss_dssp SEEEEEEEETTE
T ss_pred CEEEEEEcCCCe
Confidence 999999 4553
|
| >4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=1.1e-16 Score=173.96 Aligned_cols=152 Identities=16% Similarity=0.139 Sum_probs=92.7
Q ss_pred EEEeCCeEEEEEcCCCCCHHHHHHHHhCC--CCCc---eEEEEEEEcCccCCcccccceEEEeecCCCCCCCCCHHHHHH
Q 000979 637 GAFRPGVLTALMGVSGAGKTTLMDVLAGR--KTGG---YITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESLL 711 (1202)
Q Consensus 637 ~~i~~Ge~~al~G~sGaGKSTLl~~l~g~--~~~~---~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~ 711 (1202)
+.+++||+++|+||||||||||+++|+|. .+++ ...+.+.+++.+... .+.+++++|...+.+. |+.||+
T Consensus 20 ggi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~---~~~i~~~~~~~~~~~~-~~~~~~- 94 (231)
T 4a74_A 20 GGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFR---PERIREIAQNRGLDPD-EVLKHI- 94 (231)
T ss_dssp SSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCC---HHHHHHHHHHTTSCHH-HHHHTE-
T ss_pred CCCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCC---HHHHHHHHHHcCCCHH-HHhhcE-
Confidence 57999999999999999999999999983 3211 113456665543100 0112222332222111 222221
Q ss_pred HHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHH-HHHHHHHHHHHhh-------CCCEEEEeCCC
Q 000979 712 FSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTE-QRKRLTIAVELVA-------NPSIIFMDEPT 783 (1202)
Q Consensus 712 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgG-qrqRv~ia~aL~~-------~p~illlDEPt 783 (1202)
.+. ...+++ +++++..+++++. +|+++++||||
T Consensus 95 ---------------------------~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~ 135 (231)
T 4a74_A 95 ---------------------------YVA------------RAFNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLT 135 (231)
T ss_dssp ---------------------------EEE------------ECCSHHHHHHHHHHHHHHHHHHTTSSSCEEEEEEETSS
T ss_pred ---------------------------EEE------------ecCChHHHHHHHHHHHHHHHHhcccCCceeEEEECChH
Confidence 110 113333 3344566666666 99999999999
Q ss_pred CCCCHH-------H-----HHHHHHHHHHHHhC-CCEEEEEecCCCH---HHHHhcceEEEEecC
Q 000979 784 SGLDAR-------A-----AAIVMRTVRNTVDT-GRTVVCTIHQPSI---DIFEAFDELFLMKRG 832 (1202)
Q Consensus 784 sgLD~~-------~-----~~~v~~~l~~~~~~-g~tvi~~~H~~~~---~~~~~~d~v~~l~~g 832 (1202)
+++|+. . ...+++.|++++++ |.|||+++|..+. .+...+|+++.|.++
T Consensus 136 ~~l~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~g~tvi~vtH~~~~~g~~~~~~~d~~l~l~~~ 200 (231)
T 4a74_A 136 SHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQANGGHILAHSATLRVYLRKG 200 (231)
T ss_dssp HHHHHHSCSTTHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC---------CCSEEEEEEEC
T ss_pred HHhccccCCCcchhHHHHHHHHHHHHHHHHHHHCCCeEEEEeecccCcchhhHhhceEEEEEEec
Confidence 999984 2 23677788777644 9999999995431 266789999999863
|
| >2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=5.1e-17 Score=183.26 Aligned_cols=156 Identities=13% Similarity=0.047 Sum_probs=85.7
Q ss_pred ceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCC-CCCceEEEEEEEcCccCCcccccceEEEeecCCCCCCCCCH
Q 000979 628 KLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGR-KTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTI 706 (1202)
Q Consensus 628 ~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~-~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~lTv 706 (1202)
++.+++|++|+| +|+||||||||||++.|.|. .. +.+| +.++|.+.......+.+++++|++.....+|+
T Consensus 10 ~~~~l~~~~~~I------~lvG~nG~GKSTLl~~L~g~~~~--~~~g-i~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv 80 (301)
T 2qnr_A 10 RKSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLY--PERV-ISGAAEKIERTVQIEASTVEIEERGVKLRLTV 80 (301)
T ss_dssp --------CEEE------EEEEETTSSHHHHHHHHHC---------------------------CEEEEC---CCEEEEE
T ss_pred CEEEEcCCCEEE------EEECCCCCCHHHHHHHHhCCCcc--CCCC-cccCCcccCCcceEeeEEEEecCCCcccCcch
Confidence 456899999998 99999999999999999996 44 3467 77777665332223457899998888888999
Q ss_pred HHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCC-
Q 000979 707 YESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSG- 785 (1202)
Q Consensus 707 ~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~illlDEPtsg- 785 (1202)
.|+..++..... .+..+..++.+.+ ..+.. .+++|||||||+.+||+++ ++++||||++
T Consensus 81 ~Dt~g~~~~~~~-----~e~~~~l~~~l~~------~~~~~-----~~~~sgg~rqrv~~ara~~----ll~ldePt~~~ 140 (301)
T 2qnr_A 81 VDTPGYGDAINC-----RDCFKTIISYIDE------QFERY-----LHDESGLNRRHIIDNRVHC----CFYFISPFGHG 140 (301)
T ss_dssp EEEC----------------CTTHHHHHHH------HHHHH-----HHHHTSSCCTTCCCCCCCE----EEEEECSSSSS
T ss_pred hhhhhhhhhcCc-----HHHHHHHHHHHHH------HHHHH-----HHHhCHHhhhhhhhhhhhh----eeeeecCcccC
Confidence 998877543210 0000111122211 12232 2469999999999988875 9999999985
Q ss_pred CCHHHHHHHHHHHHHHHhC-CCEEEEEecCCC
Q 000979 786 LDARAAAIVMRTVRNTVDT-GRTVVCTIHQPS 816 (1202)
Q Consensus 786 LD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~ 816 (1202)
||+... +.++++.++ +.++|++.||..
T Consensus 141 Ld~~~~----~~l~~l~~~~~iilV~~K~Dl~ 168 (301)
T 2qnr_A 141 LKPLDV----AFMKAIHNKVNIVPVIAKADTL 168 (301)
T ss_dssp CCHHHH----HHHHHHTTTSCEEEEECCGGGS
T ss_pred CCHHHH----HHHHHHHhcCCEEEEEEeCCCC
Confidence 999873 556666543 789999999864
|
| >1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D* | Back alignment and structure |
|---|
Probab=99.56 E-value=1.1e-16 Score=179.91 Aligned_cols=149 Identities=13% Similarity=0.109 Sum_probs=103.7
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCCcc-------cc--cceEEEeecCCCCCCCCCHHHHHH
Q 000979 641 PGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQE-------TF--ARISGYCEQNDIHSPFVTIYESLL 711 (1202)
Q Consensus 641 ~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~-------~~--~~~~~~v~q~~~~~~~lTv~e~l~ 711 (1202)
+|++++|+||||||||||+++|+|...+ ..|+|.++|.+.... .+ ++.+++++|++...|..|++|++.
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~--~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v~ 178 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQN--LGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAVQ 178 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHT--TTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHh--cCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHH
Confidence 7899999999999999999999997553 258899999875321 11 345899999998888899999997
Q ss_pred HHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHH
Q 000979 712 FSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA 791 (1202)
Q Consensus 712 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~ 791 (1202)
++..-. .+ ..+++..|+.+..+. -++..++||++|||+|+.+|+.++| .||+.+.
T Consensus 179 ~~~~~~----~d--------~~llDt~G~~~~~~~--------~~~eLs~~r~~iaRal~~~P~~~lL-----vLDa~t~ 233 (304)
T 1rj9_A 179 AMKARG----YD--------LLFVDTAGRLHTKHN--------LMEELKKVKRAIAKADPEEPKEVWL-----VLDAVTG 233 (304)
T ss_dssp HHHHHT----CS--------EEEECCCCCCTTCHH--------HHHHHHHHHHHHHHHCTTCCSEEEE-----EEETTBC
T ss_pred HHHhCC----CC--------EEEecCCCCCCchHH--------HHHHHHHHHHHHHHhhcCCCCeEEE-----EEcHHHH
Confidence 653110 00 012222333322211 2455669999999999999994433 3444444
Q ss_pred HHHHHHHHHHHhC-CCEEEEEecCCC
Q 000979 792 AIVMRTVRNTVDT-GRTVVCTIHQPS 816 (1202)
Q Consensus 792 ~~v~~~l~~~~~~-g~tvi~~~H~~~ 816 (1202)
..+++.++++.+. |.|+|++||+..
T Consensus 234 ~~~~~~~~~~~~~~~~t~iivTh~d~ 259 (304)
T 1rj9_A 234 QNGLEQAKKFHEAVGLTGVIVTKLDG 259 (304)
T ss_dssp THHHHHHHHHHHHHCCSEEEEECTTS
T ss_pred HHHHHHHHHHHHHcCCcEEEEECCcc
Confidence 4566667776544 899999999743
|
| >3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=6.2e-18 Score=181.29 Aligned_cols=145 Identities=15% Similarity=0.135 Sum_probs=110.9
Q ss_pred EeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCCcccccceEEEeecCCCCC--CCCCHHHHHHHHHHc
Q 000979 639 FRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHS--PFVTIYESLLFSAWL 716 (1202)
Q Consensus 639 i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~--~~lTv~e~l~~~~~~ 716 (1202)
.++|++++|+||||||||||+++|+|...+ .++|++|++.++ +.+|++++..+..
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~~---------------------~i~~v~~d~~~~~~~~~~~~~~~~~~~-- 59 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTLAQALARTLGE---------------------RVALLPMDHYYKDLGHLPLEERLRVNY-- 59 (211)
T ss_dssp --CCEEEEEEESTTSSHHHHHHHHHHHHGG---------------------GEEEEEGGGCBCCCTTSCHHHHHHSCT--
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHhCC---------------------CeEEEecCccccCcccccHHHhcCCCC--
Confidence 578999999999999999999999986431 368999998776 5679988865421
Q ss_pred cCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHH----HHHHHHHHHHhhCCCEEEEeCCCCC-------
Q 000979 717 RLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQ----RKRLTIAVELVANPSIIFMDEPTSG------- 785 (1202)
Q Consensus 717 ~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGq----rqRv~ia~aL~~~p~illlDEPtsg------- 785 (1202)
..+.... .+.+.+.++.+++.+..+.. ...+|+|| +||+++|++++.+|+++++||||++
T Consensus 60 ~~~~~~~----~~~~~~~l~~~~~~~~~~~~-----~~~~s~g~~~~~~~~~~~~~~li~~~~ll~~de~~~~~~d~~i~ 130 (211)
T 3asz_A 60 DHPDAFD----LALYLEHAQALLRGLPVEMP-----VYDFRAYTRSPRRTPVRPAPVVILEGILVLYPKELRDLMDLKVF 130 (211)
T ss_dssp TSGGGBC----HHHHHHHHHHHHTTCCEEEC-----CEETTTTEECSSCEEECCCSEEEEESTTTTSSHHHHTTCSEEEE
T ss_pred CChhhhh----HHHHHHHHHHHHcCCCcCCC-----cccCcccCCCCCeEEeCCCcEEEEeehhhccCHHHHHhcCEEEE
Confidence 1111111 23356777777776654443 24689996 4788999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHH-HhCCCEEEEEecCC
Q 000979 786 LDARAAAIVMRTVRNT-VDTGRTVVCTIHQP 815 (1202)
Q Consensus 786 LD~~~~~~v~~~l~~~-~~~g~tvi~~~H~~ 815 (1202)
||+.....+.+.+++. .++|+|++.++|+.
T Consensus 131 ld~~~~~~~~r~l~r~~~~~g~t~~~~~~~~ 161 (211)
T 3asz_A 131 VDADADERFIRRLKRDVLERGRSLEGVVAQY 161 (211)
T ss_dssp EECCHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred EeCCHHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 9999999999998875 45699999999974
|
| >1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=1.1e-15 Score=190.99 Aligned_cols=134 Identities=19% Similarity=0.119 Sum_probs=97.6
Q ss_pred ceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCCcccccceEEEeecCCCCCCCCCHH
Q 000979 628 KLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIY 707 (1202)
Q Consensus 628 ~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~lTv~ 707 (1202)
++.+++|+|++ |++++|+||||||||||||+|+|.... +..|.+ ... .+..+++++| +++.+++.
T Consensus 565 ~~~vl~disl~---g~i~~I~GpNGsGKSTlLr~iagl~~~-~~~G~~------vpa--~~~~i~~v~~---i~~~~~~~ 629 (765)
T 1ewq_A 565 TEFVPNDLEMA---HELVLITGPNMAGKSTFLRQTALIALL-AQVGSF------VPA--EEAHLPLFDG---IYTRIGAS 629 (765)
T ss_dssp SCCCCEEEEES---SCEEEEESCSSSSHHHHHHHHHHHHHH-HTTTCC------BSS--SEEEECCCSE---EEEECCC-
T ss_pred CceEeeeccCC---CcEEEEECCCCCChHHHHHHHHhhhhh-cccCce------eeh--hccceeeHHH---hhccCCHH
Confidence 45789999999 999999999999999999999995310 001211 111 1345677765 34445554
Q ss_pred HHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHH--hhCCCEEEEeCC---
Q 000979 708 ESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVEL--VANPSIIFMDEP--- 782 (1202)
Q Consensus 708 e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~aL--~~~p~illlDEP--- 782 (1202)
||+. .++|+|+++++.++++| +.+|+++|||||
T Consensus 630 d~l~------------------------------------------~g~S~~~~e~~~la~il~~a~~p~LlLLDEpgrG 667 (765)
T 1ewq_A 630 DDLA------------------------------------------GGKSTFMVEMEEVALILKEATENSLVLLDEVGRG 667 (765)
T ss_dssp -----------------------------------------------CCSHHHHHHHHHHHHHHHCCTTEEEEEESTTTT
T ss_pred HHHH------------------------------------------hcccHHHHHHHHHHHHHHhccCCCEEEEECCCCC
Confidence 4331 14799999999999999 999999999999
Q ss_pred CCCCCHHHH-HHHHHHHHHHHhCCCEEEEEecCCCHHHHHhc
Q 000979 783 TSGLDARAA-AIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAF 823 (1202)
Q Consensus 783 tsgLD~~~~-~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~ 823 (1202)
|++||..+. ..+.+.|++ .|.|+|++||+. ++.+++
T Consensus 668 Ts~lD~~~~~~~i~~~L~~---~g~~vl~~TH~~--~l~~~~ 704 (765)
T 1ewq_A 668 TSSLDGVAIATAVAEALHE---RRAYTLFATHYF--ELTALG 704 (765)
T ss_dssp SCHHHHHHHHHHHHHHHHH---HTCEEEEECCCH--HHHTCC
T ss_pred CCCcCHHHHHHHHHHHHHh---CCCEEEEEeCCH--HHHHhh
Confidence 999999875 567777765 589999999985 345544
|
| >1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A* | Back alignment and structure |
|---|
Probab=99.55 E-value=9.8e-16 Score=192.67 Aligned_cols=157 Identities=13% Similarity=0.038 Sum_probs=106.2
Q ss_pred ceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCCcccccceEEEeecCCCCCCCCCHH
Q 000979 628 KLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIY 707 (1202)
Q Consensus 628 ~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~lTv~ 707 (1202)
++.+++|+|++ ++|++++|+||||||||||||+|+|....+. .|..+... +..++++.| +++.+++.
T Consensus 594 ~~~vlndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl~~~~q-------~G~~vpa~--~~~i~~~~~---i~~~~~~~ 660 (800)
T 1wb9_A 594 EPFIANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIALMAY-------IGSYVPAQ--KVEIGPIDR---IFTRVGAA 660 (800)
T ss_dssp SCCCCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHHHHHT-------TTCCBSSS--EEEECCCCE---EEEEEC--
T ss_pred Cceeeeccccc-CCCcEEEEECCCCCChHHHHHHHHHHHHHHh-------cCcccchh--cccceeHHH---HHhhCCHH
Confidence 45689999999 9999999999999999999999998421000 12111111 123455544 34444555
Q ss_pred HHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCC
Q 000979 708 ESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 787 (1202)
Q Consensus 708 e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD 787 (1202)
|++..+ .+.+|++++ +++.+..++.+|+++|||||++|+|
T Consensus 661 d~l~~~---------------------------------------~stf~~e~~-~~~~il~~a~~psLlLLDEp~~Gtd 700 (800)
T 1wb9_A 661 DDLASG---------------------------------------RSTFMVEMT-ETANILHNATEYSLVLMDEIGRGTS 700 (800)
T ss_dssp ------------------------------------------------CHHHHH-HHHHHHHHCCTTEEEEEESCCCCSS
T ss_pred HHHHhh---------------------------------------hhhhhHHHH-HHHHHHHhccCCCEEEEECCCCCCC
Confidence 543210 113566665 4555556789999999999999999
Q ss_pred HHHHHHH-HHHHHHHHh-CCCEEEEEecCCCHHHHHhcceEEEEecCCEEEEEcC
Q 000979 788 ARAAAIV-MRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGP 840 (1202)
Q Consensus 788 ~~~~~~v-~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G~ 840 (1202)
+.....+ +..++.+.+ .|.++|++||+++ +.+++|++..+.+ |++.+...
T Consensus 701 ~~d~~~i~~~ll~~l~~~~g~~vl~~TH~~e--l~~l~d~~~~v~n-~~~~~~~~ 752 (800)
T 1wb9_A 701 TYDGLSLAWACAENLANKIKALTLFATHYFE--LTQLPEKMEGVAN-VHLDALEH 752 (800)
T ss_dssp SSHHHHHHHHHHHHHHHTTCCEEEEECSCGG--GGGHHHHSTTEEE-EEEEEEEE
T ss_pred hhHHHHHHHHHHHHHHhccCCeEEEEeCCHH--HHHHhhhhhceEE-EEEEEEEc
Confidence 9877775 778888877 4999999999974 5578888777764 67766543
|
| >1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11 | Back alignment and structure |
|---|
Probab=99.52 E-value=3.2e-16 Score=180.26 Aligned_cols=164 Identities=18% Similarity=0.147 Sum_probs=98.1
Q ss_pred eecc-eEEEeCCeEEEEEcCCCCCHHHHHHHHhCCC--CC--ceEEEE-EEEcCccCCcccccceEEEeecCCCCCCCCC
Q 000979 632 LNGV-SGAFRPGVLTALMGVSGAGKTTLMDVLAGRK--TG--GYITGN-ITISGYPKKQETFARISGYCEQNDIHSPFVT 705 (1202)
Q Consensus 632 L~~v-s~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~--~~--~~~~G~-i~~~g~~~~~~~~~~~~~~v~q~~~~~~~lT 705 (1202)
|+++ ++.+++|++++|+||||||||||++.|++.. ++ |...|. +++++.+.. .++.+++++|...+.+. +
T Consensus 120 LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~---~~~~i~~i~q~~~~~~~-~ 195 (349)
T 1pzn_A 120 LDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTF---RPERIREIAQNRGLDPD-E 195 (349)
T ss_dssp HHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCC---CHHHHHHHHHTTTCCHH-H
T ss_pred HHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCC---CHHHHHHHHHHcCCCHH-H
Confidence 5565 6899999999999999999999999999854 21 111255 777775431 12234445554333221 2
Q ss_pred HHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHh-------hCCCEEE
Q 000979 706 IYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELV-------ANPSIIF 778 (1202)
Q Consensus 706 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~aL~-------~~p~ill 778 (1202)
+.||+.+. +. .-|.+|+|++.++++++ .+|++|+
T Consensus 196 v~~ni~~~-------------------------------~~--------~~~~~~~~~l~~~~~~~~~lS~G~~~~~llI 236 (349)
T 1pzn_A 196 VLKHIYVA-------------------------------RA--------FNSNHQMLLVQQAEDKIKELLNTDRPVKLLI 236 (349)
T ss_dssp HGGGEEEE-------------------------------EC--------CSHHHHHHHHHHHHHHHHHSSSSSSCEEEEE
T ss_pred HhhCEEEE-------------------------------ec--------CChHHHHHHHHHHHHHHHHhccccCCCCEEE
Confidence 22222110 00 01467778888888877 6899999
Q ss_pred EeCCCCCCCHHH------------HHHHHHHHHHHHh-CCCEEEEEecCCCHHHHHhcceEEEEecCCEEEEEcC
Q 000979 779 MDEPTSGLDARA------------AAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGP 840 (1202)
Q Consensus 779 lDEPtsgLD~~~------------~~~v~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G~ 840 (1202)
+||||+++|+.. ...+++.|+++++ .|.|||+++|... ..-..+++..... +|+++.++.
T Consensus 237 lDs~ta~ld~~~~~~~~~~~r~~~~~~~l~~L~~la~~~~~tvii~~h~~~-~~~~~~~~~~~~~-~G~~l~~~~ 309 (349)
T 1pzn_A 237 VDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQA-RPDAFFGDPTRPI-GGHILAHSA 309 (349)
T ss_dssp EETSSTTHHHHCCSTTTHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECC-----------------CCCCCTTC
T ss_pred EeCchHhhhhhhcccccHHHHHHHHHHHHHHHHHHHHHcCcEEEEEccccc-ccccccCCccccC-CcceEeecC
Confidence 999999999852 3566667777765 4899999999865 3333344444444 455544433
|
| >3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=4.5e-15 Score=170.19 Aligned_cols=127 Identities=20% Similarity=0.242 Sum_probs=85.0
Q ss_pred EEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCCcccccceEEEeecCCCCCCCCCHHHHHHHHHHcc
Q 000979 638 AFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESLLFSAWLR 717 (1202)
Q Consensus 638 ~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~ 717 (1202)
...+|++++|+|||||||||||++|+|...+. ..|.|...+.+.. ...+...++++|......
T Consensus 119 ~~~~~g~i~I~GptGSGKTTlL~~l~g~~~~~-~~~~i~t~ed~~e-~~~~~~~~~v~q~~~~~~--------------- 181 (356)
T 3jvv_A 119 SDVPRGLVLVTGPTGSGKSTTLAAMLDYLNNT-KYHHILTIEDPIE-FVHESKKCLVNQREVHRD--------------- 181 (356)
T ss_dssp HHCSSEEEEEECSTTSCHHHHHHHHHHHHHHH-CCCEEEEEESSCC-SCCCCSSSEEEEEEBTTT---------------
T ss_pred HhCCCCEEEEECCCCCCHHHHHHHHHhcccCC-CCcEEEEccCcHH-hhhhccccceeeeeeccc---------------
Confidence 67899999999999999999999999965321 1234433322221 111112233443221111
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHH
Q 000979 718 LSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT 797 (1202)
Q Consensus 718 ~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~ 797 (1202)
.++-.+ +||++|..+|++|++|||| |.++.. .
T Consensus 182 -------------------------------------~~~~~~----~La~aL~~~PdvillDEp~---d~e~~~----~ 213 (356)
T 3jvv_A 182 -------------------------------------TLGFSE----ALRSALREDPDIILVGEMR---DLETIR----L 213 (356)
T ss_dssp -------------------------------------BSCHHH----HHHHHTTSCCSEEEESCCC---SHHHHH----H
T ss_pred -------------------------------------cCCHHH----HHHHHhhhCcCEEecCCCC---CHHHHH----H
Confidence 122222 9999999999999999999 666543 4
Q ss_pred HHHHHhCCCEEEEEecCCCHHHHHhcceEEEEec
Q 000979 798 VRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKR 831 (1202)
Q Consensus 798 l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~ 831 (1202)
+.++++.|+||++|+|+.+. .+.+||++.|..
T Consensus 214 ~~~~~~~G~~vl~t~H~~~~--~~~~dRli~l~~ 245 (356)
T 3jvv_A 214 ALTAAETGHLVFGTLHTTSA--AKTIDRVVDVFP 245 (356)
T ss_dssp HHHHHHTTCEEEEEESCSSH--HHHHHHHHHTSC
T ss_pred HHHHHhcCCEEEEEEccChH--HHHHHHHhhhcC
Confidence 44456679999999999873 488999998853
|
| >3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=1.1e-14 Score=168.66 Aligned_cols=83 Identities=25% Similarity=0.352 Sum_probs=72.8
Q ss_pred cccccCccccchhhHHHHHh------cCCeEeeeeCCCccccHHHHHHHHHHHHHHhHhCCCEEEEEecCCChHHHhhhc
Q 000979 68 MIRGISGGQKKRVTTGEMMV------GPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFD 141 (1202)
Q Consensus 68 ~~~gLSGGQKqRvsIAraLv------~~P~ILlLDEpTSGLDs~sa~~vv~~L~~~a~~~~tTiIiaihQp~~s~~~~fD 141 (1202)
....|||||||||+||+||+ .+|++|+|||||+|||+.+...+++.++++.. .+.|||++.|.+ +..+.+|
T Consensus 276 ~~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~-~g~tvi~itH~~--~~~~~~d 352 (365)
T 3qf7_A 276 PARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELER-LNKVIVFITHDR--EFSEAFD 352 (365)
T ss_dssp EGGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGG-SSSEEEEEESCH--HHHTTCS
T ss_pred CchhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh-CCCEEEEEecch--HHHHhCC
Confidence 45689999999999999999 79999999999999999999999999998764 577887776655 4588899
Q ss_pred ceEEecCCcEEE
Q 000979 142 DIILLSDGQIVY 153 (1202)
Q Consensus 142 ~IvvL~~G~vvy 153 (1202)
+|++|.+|++++
T Consensus 353 ~~~~l~~G~i~~ 364 (365)
T 3qf7_A 353 RKLRITGGVVVN 364 (365)
T ss_dssp CEEEEETTEEC-
T ss_pred EEEEEECCEEEe
Confidence 999999999975
|
| >1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A | Back alignment and structure |
|---|
Probab=99.50 E-value=3.4e-14 Score=159.05 Aligned_cols=151 Identities=22% Similarity=0.207 Sum_probs=101.9
Q ss_pred EEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCCcccccceEEEeecCCCCCCCCCHHHHHHHHHHcc
Q 000979 638 AFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESLLFSAWLR 717 (1202)
Q Consensus 638 ~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~ 717 (1202)
.+++|++++|+||||||||||++.+++.... |.+ +.|.+... ...+.|+..++.. ..+.+.+. .+.
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~~~----g~~-~~g~~~~~---~~~v~~~~~e~~~---~~~~~r~~---~~g 91 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQIAG----GPD-LLEVGELP---TGPVIYLPAEDPP---TAIHHRLH---ALG 91 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHHHT----CCC-TTCCCCCC---CCCEEEEESSSCH---HHHHHHHH---HHH
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHHhc----CCC-cCCCccCC---CccEEEEECCCCH---HHHHHHHH---HHH
Confidence 4899999999999999999999999974332 333 23433211 2346777765432 11112211 111
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCC--CCCHHHH---H
Q 000979 718 LSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTS--GLDARAA---A 792 (1202)
Q Consensus 718 ~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~illlDEPts--gLD~~~~---~ 792 (1202)
. .... ...+++++.+++.+..+.. ...||+||+|++ ++++.+|+++++||||+ ++|.... .
T Consensus 92 ~--~~~~----~~~~~~~~~l~l~~~~~~~-----~~~ls~g~~~~i---~~l~~~~~livlDe~~~~~~~d~~~~~~~~ 157 (279)
T 1nlf_A 92 A--HLSA----EERQAVADGLLIQPLIGSL-----PNIMAPEWFDGL---KRAAEGRRLMVLDTLRRFHIEEENASGPMA 157 (279)
T ss_dssp T--TSCH----HHHHHHHHHEEECCCTTSC-----CCTTSHHHHHHH---HHHHTTCSEEEEECGGGGCCSCTTCHHHHH
T ss_pred h--hcCh----hhhhhccCceEEeecCCCC-----cccCCHHHHHHH---HHhcCCCCEEEECCHHHhcCCCcCchHHHH
Confidence 1 1222 1245677888877665543 356999998875 68899999999999999 9998544 7
Q ss_pred HHHHHHHHHH-hCCCEEEEEecCCC
Q 000979 793 IVMRTVRNTV-DTGRTVVCTIHQPS 816 (1202)
Q Consensus 793 ~v~~~l~~~~-~~g~tvi~~~H~~~ 816 (1202)
.+++.|++++ +.|+|||+++|+..
T Consensus 158 ~~~~~L~~l~~~~g~tvi~i~H~~~ 182 (279)
T 1nlf_A 158 QVIGRMEAIAADTGCSIVFLHHASK 182 (279)
T ss_dssp HHHHHHHHHHHHHCCEEEEEEEC--
T ss_pred HHHHHHHHHHHHcCCEEEEEecCCC
Confidence 8888898886 45999999999864
|
| >3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B | Back alignment and structure |
|---|
Probab=99.49 E-value=1.2e-15 Score=188.09 Aligned_cols=166 Identities=12% Similarity=0.157 Sum_probs=107.4
Q ss_pred eEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCC------cccccceEEEeecCCCCCCCCCHHHH
Q 000979 636 SGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK------QETFARISGYCEQNDIHSPFVTIYES 709 (1202)
Q Consensus 636 s~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~------~~~~~~~~~~v~q~~~~~~~lTv~e~ 709 (1202)
+++++. +||+|||||||||||++|+|...+ ..+|.|.++|.++. ...+++.++|++|++.+++.+||+||
T Consensus 42 ~l~lp~---iaIvG~nGsGKSTLL~~I~Gl~~P-~~sG~vt~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~ 117 (608)
T 3szr_A 42 DLALPA---IAVIGDQSSGKSSVLEALSGVALP-RGSGIVTRCPLVLKLKKLVNEDKWRGKVSYQDYEIEISDASEVEKE 117 (608)
T ss_dssp SCCCCC---EECCCCTTSCHHHHHHHHHSCC--------CCCSCEEEEEEECSSSSCCEEEESCC---CCCCCHHHHHTT
T ss_pred cccCCe---EEEECCCCChHHHHHHHHhCCCCC-CCCCeEEEcCEEEEEecCCccccceeEEeeecccccCCCHHHHHHH
Confidence 344544 999999999999999999998653 14899999998742 13467789999999999999999999
Q ss_pred HHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCC------C
Q 000979 710 LLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEP------T 783 (1202)
Q Consensus 710 l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~illlDEP------t 783 (1202)
+.+......... .+ +| ++++.++.+...+|+++++||| |
T Consensus 118 i~~~~~~~~~~~----------------~~----------------~s---~~~i~l~i~~~~~p~LlLlDePGi~~~~t 162 (608)
T 3szr_A 118 INKAQNAIAGEG----------------MG----------------IS---HELITLEISSRDVPDLTLIDLPGITRVAV 162 (608)
T ss_dssp HHHHHHHHHCSS----------------SC----------------CC---SCCEEEEEEESSSCCEEEEECCC------
T ss_pred HHHHHHHhcCCc----------------cc----------------cc---hHHHHHHhcCCCCCceeEeeCCCcccccc
Confidence 987532110000 00 11 0112222223458999999999 9
Q ss_pred CCCCHHHHHHHHHHHHHHHhC--CCEEEEEecCCC------HHHHHhc-----ceEEEEecCCEEEEEcCC
Q 000979 784 SGLDARAAAIVMRTVRNTVDT--GRTVVCTIHQPS------IDIFEAF-----DELFLMKRGGQEIYVGPL 841 (1202)
Q Consensus 784 sgLD~~~~~~v~~~l~~~~~~--g~tvi~~~H~~~------~~~~~~~-----d~v~~l~~gG~~~~~G~~ 841 (1202)
+|||+..+..+.++++++.++ +.++++++|+.+ ..+.+.. ..++++.+ +..+..|+.
T Consensus 163 ~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a~~~~l~la~~v~~~g~rtI~VlTK-~Dlv~~g~~ 232 (608)
T 3szr_A 163 GNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIATTEALSMAQEVDPEGDRTIGILTK-PDLVDKGTE 232 (608)
T ss_dssp CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTTTCHHHHHHHHHCSSCCSEEEEEEC-GGGSSSSST
T ss_pred CCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhccHHHHHHHHHHhhcCCceEEEecc-hhhcCcccH
Confidence 999999999999999996443 678899999876 2233332 34566664 555555543
|
| >2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=99.48 E-value=1.2e-16 Score=166.91 Aligned_cols=158 Identities=20% Similarity=0.198 Sum_probs=100.5
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCCc-ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCC
Q 000979 642 GVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ-ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSP 720 (1202)
Q Consensus 642 Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~-~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~ 720 (1202)
||+++|+||||||||||+++|+|... . +| +.++|.+..+ ..+++.+||++|+. .... +++ +.+..
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~-~--~G-i~~~g~~~~~~~~~~~~ig~~~~~~--~g~~---~~l---~~~~~-- 66 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLK-S--SG-VPVDGFYTEEVRQGGRRIGFDVVTL--SGTR---GPL---SRVGL-- 66 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHH-H--TT-CCCEEEECCEEETTSSEEEEEEEET--TSCE---EEE---EECCC--
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcc-c--CC-EEEcCEecchhHhhhceEEEEEEec--ccce---ehh---hcccc--
Confidence 78999999999999999999999653 2 36 7777765433 23567889999974 1111 111 01100
Q ss_pred CCCHHHHHHHHHHHHHHcCCCc-cccccccCCCCCCCCHHHHHHH-HHHH---HHhhCCCEEEEeC--CCCCCCHHHHHH
Q 000979 721 EVDSETRKMFIDEVMELVELNP-LRQSLVGLPGVSGLSTEQRKRL-TIAV---ELVANPSIIFMDE--PTSGLDARAAAI 793 (1202)
Q Consensus 721 ~~~~~~~~~~~~~~l~~l~l~~-~~~~~~~~~~~~~LSgGqrqRv-~ia~---aL~~~p~illlDE--PtsgLD~~~~~~ 793 (1202)
+..+ ..+..++.. ...+|+|||+++ ++++ |+..+|++|+||| ||..+|......
T Consensus 67 ------------------~~~~~~~~~~v~~~-~~~ls~~er~~~~~l~~~a~A~~~~~dvlilDE~g~~~~~~~~~~~~ 127 (189)
T 2i3b_A 67 ------------------EPPPGKRECRVGQY-VVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQLFIQA 127 (189)
T ss_dssp ------------------CCCSSSCCEESSSS-EECHHHHHTTTTTTTCCCCCCCSSCCCCEEECCCSTTTTTCSHHHHH
T ss_pred ------------------cCCccccccccceE-EEcchHHHHHHHHHHhhhhHhhccCCCEEEEeCCCccccccHHHHHH
Confidence 0000 011133332 235999999988 4454 6789999999999 899999876555
Q ss_pred HHHHHHHHHhCCCEEEE----EecCCCHHHHHhcceEEEEecCCEEEEEcC
Q 000979 794 VMRTVRNTVDTGRTVVC----TIHQPSIDIFEAFDELFLMKRGGQEIYVGP 840 (1202)
Q Consensus 794 v~~~l~~~~~~g~tvi~----~~H~~~~~~~~~~d~v~~l~~gG~~~~~G~ 840 (1202)
+.+++ +...++|+ ++|+.+ ..+.|++..+. +|+++...+
T Consensus 128 l~~~l----~~~~~~ilgti~vsh~~~---~~~vd~i~~~~-~~~i~~~~~ 170 (189)
T 2i3b_A 128 VRQTL----STPGTIILGTIPVPKGKP---LALVEEIRNRK-DVKVFNVTK 170 (189)
T ss_dssp HHHHH----HCSSCCEEEECCCCCSSC---CTTHHHHHTTC-CSEEEECCS
T ss_pred HHHHH----hCCCcEEEEEeecCCCCc---hHHHHHHeecC-CcEEEEeCh
Confidence 54444 44455553 238764 24567777665 577776544
|
| >2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2} | Back alignment and structure |
|---|
Probab=99.48 E-value=5.7e-14 Score=152.59 Aligned_cols=166 Identities=14% Similarity=0.158 Sum_probs=104.4
Q ss_pred EEeecceE-EEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCCcccccc---eEEEeecCCCCCCCCC
Q 000979 630 VLLNGVSG-AFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFAR---ISGYCEQNDIHSPFVT 705 (1202)
Q Consensus 630 ~iL~~vs~-~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~---~~~~v~q~~~~~~~lT 705 (1202)
..|+++.+ .+++|++++|+||||||||||++.|++.... ..|.+.+.+.+.......+ ..++.+|+...
T Consensus 10 ~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 82 (235)
T 2w0m_A 10 LDFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGLR--DGDPCIYVTTEESRDSIIRQAKQFNWDFEEYIE----- 82 (235)
T ss_dssp HHHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHHH--HTCCEEEEESSSCHHHHHHHHHHTTCCCGGGBT-----
T ss_pred hHHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHHH--CCCeEEEEEcccCHHHHHHHHHHhcchHHHHhh-----
Confidence 35888886 8999999999999999999999999975321 1233333332211100000 01111110000
Q ss_pred HHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCC--EEEEeCCC
Q 000979 706 IYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPS--IIFMDEPT 783 (1202)
Q Consensus 706 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~--illlDEPt 783 (1202)
++ +.. ++...+.++ .... ....|.+|.++...+.....+|+ ++++||||
T Consensus 83 --~~------~~~------------~~~~~~~~~-----~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~ 133 (235)
T 2w0m_A 83 --KK------LII------------IDALMKEKE-----DQWS----LVNLTPEELVNKVIEAKQKLGYGKARLVIDSVS 133 (235)
T ss_dssp --TT------EEE------------EECCC---------CTTB----CSSCCHHHHHHHHHHHHHHHCSSCEEEEEETGG
T ss_pred --CC------EEE------------EeccccccC-----ceee----ecCCCHHHHHHHHHHHHHhhCCCceEEEEECch
Confidence 00 000 000000000 0000 12359999998888888888999 99999999
Q ss_pred CCC--CHHHHHHHHHHHHHHHh-CCCEEEEEecCCC-------HHHHHhcceEEEEec
Q 000979 784 SGL--DARAAAIVMRTVRNTVD-TGRTVVCTIHQPS-------IDIFEAFDELFLMKR 831 (1202)
Q Consensus 784 sgL--D~~~~~~v~~~l~~~~~-~g~tvi~~~H~~~-------~~~~~~~d~v~~l~~ 831 (1202)
+++ |+.....+++.|+++++ .|.|||+++|+.+ ..+.+.+|++++|.+
T Consensus 134 ~~~~~d~~~~~~~~~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~d~vi~l~~ 191 (235)
T 2w0m_A 134 ALFLDKPAMARKISYYLKRVLNKWNFTIYATSQYAITTSQAFGFGVEHVADGIIRFRR 191 (235)
T ss_dssp GGSSSCGGGHHHHHHHHHHHHHHTTEEEEEEEC-----------CHHHHCSEEEEEEE
T ss_pred HhhcCCHHHHHHHHHHHHHHHHhCCCeEEEEeccCcccccccccchheeeeEEEEEEE
Confidence 888 99999999999999864 5999999999973 237788999999985
|
| >2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.45 E-value=1.7e-15 Score=176.84 Aligned_cols=164 Identities=13% Similarity=0.109 Sum_probs=94.6
Q ss_pred eeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccC
Q 000979 603 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 682 (1202)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 682 (1202)
.+.++|++++|. ++.+++|+||+| +|+||||||||||+++|+|...+.+..|.+.+++.+
T Consensus 11 ~l~~~~l~~~y~-------------~~~vl~~vsf~I------~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~- 70 (418)
T 2qag_C 11 YVGFANLPNQVY-------------RKSVKRGFEFTL------MVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKK- 70 (418)
T ss_dssp ----CCCCCCTT-------------TTTCC-CCCEEE------EEECCTTSSHHHHHHHHTTCCCCCCCCCSCC------
T ss_pred cEEEEecceeEC-------------CEEEecCCCEEE------EEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCcc-
Confidence 367778776542 245799999998 999999999999999999975421112222222111
Q ss_pred CcccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHH
Q 000979 683 KQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRK 762 (1202)
Q Consensus 683 ~~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrq 762 (1202)
....+.+++++|++.+.+.+||.||+.++.... .... ...+.+.+ + ..++.+++|
T Consensus 71 --t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~------~~~~---~~~i~~~i------~--------~~~~~~l~q 125 (418)
T 2qag_C 71 --TVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVD------NSNC---WQPVIDYI------D--------SKFEDYLNA 125 (418)
T ss_dssp --CCEEEEEECC------CEEEEEEECC--------------------CHHHHHHH------H--------HHHHHHTTT
T ss_pred --ceeeeeEEEEEecCCcccceeeeechhhhhhcc------chhh---HHHHHHHH------H--------HHHHHHHHH
Confidence 112356799999988888899999988764321 0000 11121111 0 125667788
Q ss_pred HHHHHHHHhhCCC---EEEEeCCC-CCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCC
Q 000979 763 RLTIAVELVANPS---IIFMDEPT-SGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPS 816 (1202)
Q Consensus 763 Rv~ia~aL~~~p~---illlDEPt-sgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~ 816 (1202)
|++|||+++.+|+ +|++|||| .|||+... +.++++. .+.++|+++|..+
T Consensus 126 r~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~----~~lk~L~-~~v~iIlVinK~D 178 (418)
T 2qag_C 126 ESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDI----EFMKRLH-EKVNIIPLIAKAD 178 (418)
T ss_dssp SCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHH----HHHHHHT-TTSEEEEEEESTT
T ss_pred HHHHHHHhccCCCeeEEEEEecCcccCCCHHHH----HHHHHHh-ccCcEEEEEEccc
Confidence 9999999999999 99999999 69999873 4445554 3778888888643
|
| >1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.44 E-value=2.7e-15 Score=160.39 Aligned_cols=177 Identities=14% Similarity=0.063 Sum_probs=94.5
Q ss_pred eEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCC---CceEEEEEEEcCc
Q 000979 604 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKT---GGYITGNITISGY 680 (1202)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~---~~~~~G~i~~~g~ 680 (1202)
++++|+++.|.. .++++ +.+++|+.++|+|+||||||||+|.|+|... ..+..|.+...+.
T Consensus 4 l~~~~~~~~~~~--------------~~l~~--~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~ 67 (210)
T 1pui_A 4 LNYQQTHFVMSA--------------PDIRH--LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINL 67 (210)
T ss_dssp -------CEEEE--------------SSGGG--SSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEE
T ss_pred hhhhhhhheeec--------------CCHhH--CCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEE
Confidence 577888888741 24777 8899999999999999999999999999651 0123444332111
Q ss_pred cCCcccccceEEEeecCCCCC----CCCC---HHHHHHHHHH-cc----------CCCCCCHHHHHHHHHHHHHHcCCCc
Q 000979 681 PKKQETFARISGYCEQNDIHS----PFVT---IYESLLFSAW-LR----------LSPEVDSETRKMFIDEVMELVELNP 742 (1202)
Q Consensus 681 ~~~~~~~~~~~~~v~q~~~~~----~~lT---v~e~l~~~~~-~~----------~~~~~~~~~~~~~~~~~l~~l~l~~ 742 (1202)
-. .....-++ +.+.+. +.-. .+..+..... .+ .....+. .+..+.+.++..++..
T Consensus 68 ~~----~~~~~~l~-Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~--~~~~~~~~~~~~~~~~ 140 (210)
T 1pui_A 68 FE----VADGKRLV-DLPGYGYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKD--LDQQMIEWAVDSNIAV 140 (210)
T ss_dssp EE----EETTEEEE-ECCCCC------CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCH--HHHHHHHHHHHTTCCE
T ss_pred EE----ecCCEEEE-ECcCCcccccCHHHHHHHHHHHHHHHHhhhcccEEEEEEECCCCCch--hHHHHHHHHHHcCCCe
Confidence 00 00000011 111110 0000 1111211111 00 0011111 1223445556566543
Q ss_pred cccccccCCCCCCCCHHHHHH-HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCE
Q 000979 743 LRQSLVGLPGVSGLSTEQRKR-LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT 807 (1202)
Q Consensus 743 ~~~~~~~~~~~~~LSgGqrqR-v~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~t 807 (1202)
.. +++. ...+|+||||| +..+++++.+|+++++|||||++|......+.+.|.++.++|.|
T Consensus 141 ~~---v~nK-~D~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~~~~~~~ 202 (210)
T 1pui_A 141 LV---LLTK-ADKLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTWFSEMQP 202 (210)
T ss_dssp EE---EEEC-GGGSCHHHHHHHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHHHHHC----
T ss_pred EE---EEec-ccCCCchhHHHHHHHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHHHHHhhccc
Confidence 21 1111 23589999999 89999999999999999999999999999999999988766644
|
| >3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B* | Back alignment and structure |
|---|
Probab=99.43 E-value=3.4e-13 Score=138.05 Aligned_cols=75 Identities=11% Similarity=0.184 Sum_probs=65.9
Q ss_pred CCCCCHHHHHHHHHHHHHhh----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEE
Q 000979 753 VSGLSTEQRKRLTIAVELVA----NPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFL 828 (1202)
Q Consensus 753 ~~~LSgGqrqRv~ia~aL~~----~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~ 828 (1202)
+..||||||||++||++|+. +|++++|||||+|||+.++..+.+.|+++.+ +.++|++||+. .+.+.+|+++.
T Consensus 62 ~~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~-~~~~ivith~~--~~~~~ad~i~~ 138 (173)
T 3kta_B 62 IEAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSK-ESQFIVITLRD--VMMANADKIIG 138 (173)
T ss_dssp GGGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHTT-TSEEEEECSCH--HHHTTCSEEEE
T ss_pred cccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHhcc-CCEEEEEEecH--HHHHhCCEEEE
Confidence 35699999999999999974 4699999999999999999999999998854 57899999985 46789999987
Q ss_pred Ee
Q 000979 829 MK 830 (1202)
Q Consensus 829 l~ 830 (1202)
+.
T Consensus 139 v~ 140 (173)
T 3kta_B 139 VS 140 (173)
T ss_dssp EE
T ss_pred EE
Confidence 64
|
| >3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B* | Back alignment and structure |
|---|
Probab=99.41 E-value=1.7e-13 Score=140.16 Aligned_cols=77 Identities=23% Similarity=0.340 Sum_probs=63.6
Q ss_pred ccccCccccchhhHHHHHh----cCCeEeeeeCCCccccHHHHHHHHHHHHHHhHhCCCEEEEEecCCChHHHhhhcceE
Q 000979 69 IRGISGGQKKRVTTGEMMV----GPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDII 144 (1202)
Q Consensus 69 ~~gLSGGQKqRvsIAraLv----~~P~ILlLDEpTSGLDs~sa~~vv~~L~~~a~~~~tTiIiaihQp~~s~~~~fD~Iv 144 (1202)
...||||||||++||++++ ++|++++|||||+|||..++..+.+.+++... + +++|+.+ |+..+.+.+|+|+
T Consensus 62 ~~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~-~-~~~ivit--h~~~~~~~ad~i~ 137 (173)
T 3kta_B 62 IEAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSK-E-SQFIVIT--LRDVMMANADKII 137 (173)
T ss_dssp GGGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHTT-T-SEEEEEC--SCHHHHTTCSEEE
T ss_pred cccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHhcc-C-CEEEEEE--ecHHHHHhCCEEE
Confidence 4679999999999999996 56799999999999999999999999988653 3 4444443 4467899999998
Q ss_pred Eec--CC
Q 000979 145 LLS--DG 149 (1202)
Q Consensus 145 vL~--~G 149 (1202)
.+. +|
T Consensus 138 ~v~~~~g 144 (173)
T 3kta_B 138 GVSMRDG 144 (173)
T ss_dssp EEEEETT
T ss_pred EEEecCC
Confidence 764 55
|
| >4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.38 E-value=3.7e-13 Score=159.78 Aligned_cols=81 Identities=17% Similarity=0.219 Sum_probs=72.4
Q ss_pred cCccccchhhHHHHHhcCC--eEeeeeCCCccccHHHHHHHHHHHHHHhHhCCCEEEEEecCCChHHHhhhcceEEe---
Q 000979 72 ISGGQKKRVTTGEMMVGPA--LALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILL--- 146 (1202)
Q Consensus 72 LSGGQKqRvsIAraLv~~P--~ILlLDEpTSGLDs~sa~~vv~~L~~~a~~~~tTiIiaihQp~~s~~~~fD~IvvL--- 146 (1202)
+||||||||+||++|+.+| +||+|||||+|||..+...+.+.|++++ +++|||++.|.| ++...+|++++|
T Consensus 296 lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~--~~~~vi~itH~~--~~~~~~d~i~~l~k~ 371 (415)
T 4aby_A 296 ASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLA--DTRQVLVVTHLA--QIAARAHHHYKVEKQ 371 (415)
T ss_dssp SCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHT--TTSEEEEECSCH--HHHTTCSEEEEEEEE
T ss_pred cCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHh--CCCEEEEEeCcH--HHHhhcCeEEEEEEe
Confidence 6999999999999999999 9999999999999999999999999976 367777776664 778999999999
Q ss_pred -cCCcEEEEcC
Q 000979 147 -SDGQIVYQGP 156 (1202)
Q Consensus 147 -~~G~vvy~G~ 156 (1202)
.+|+++-...
T Consensus 372 ~~~G~~~~~~~ 382 (415)
T 4aby_A 372 VEDGRTVSHVR 382 (415)
T ss_dssp EETTEEEEEEE
T ss_pred ccCCceEEEEE
Confidence 9999877643
|
| >4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.38 E-value=4.4e-13 Score=163.05 Aligned_cols=76 Identities=22% Similarity=0.324 Sum_probs=70.2
Q ss_pred CCCC-CHHHHHHHHHHHHHhhCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEE
Q 000979 753 VSGL-STEQRKRLTIAVELVANP--SIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLM 829 (1202)
Q Consensus 753 ~~~L-SgGqrqRv~ia~aL~~~p--~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l 829 (1202)
+..| ||||||||+||++|+.+| ++|+|||||+|||+.++..+.+.|+++++ |+|||++||++. +...+|++++|
T Consensus 394 ~~~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~-~~~vi~itH~~~--~~~~~d~~~~~ 470 (517)
T 4ad8_A 394 LSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLAD-TRQVLVVTHLAQ--IAARAHHHYKV 470 (517)
T ss_dssp SSSSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHH-HSEEEEECCCHH--HHHHSSEEEEE
T ss_pred HHhcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhC-CCEEEEEecCHH--HHHhCCEEEEE
Confidence 3457 999999999999999999 99999999999999999999999999987 899999999964 56789999999
Q ss_pred ec
Q 000979 830 KR 831 (1202)
Q Consensus 830 ~~ 831 (1202)
.+
T Consensus 471 ~~ 472 (517)
T 4ad8_A 471 EK 472 (517)
T ss_dssp EC
T ss_pred ec
Confidence 75
|
| >2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.37 E-value=2.4e-14 Score=166.07 Aligned_cols=167 Identities=17% Similarity=0.140 Sum_probs=110.1
Q ss_pred eecceEEEeCCeE--EEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCCcccccceEEEeecCCCCCCCCCHHHH
Q 000979 632 LNGVSGAFRPGVL--TALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYES 709 (1202)
Q Consensus 632 L~~vs~~i~~Ge~--~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~lTv~e~ 709 (1202)
|+++|+++++|++ ++|+||||||||||+|+|+|.... |.. +... .....++.++|++|++.+++.+||.||
T Consensus 30 L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~l~----g~~-~~~~--~~~~~~~~i~~v~Q~~~l~~~ltv~D~ 102 (427)
T 2qag_B 30 DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTKFE----GEP-ATHT--QPGVQLQSNTYDLQESNVRLKLTIVST 102 (427)
T ss_dssp HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSCC------------C--CSSCEEEEEEEEEEC--CEEEEEEEEE
T ss_pred cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCcccc----CCc-CCCC--CccceEeeEEEEeecCccccccchhhh
Confidence 9999999999999 999999999999999999997421 111 1111 112234578999999988888999999
Q ss_pred HHHHHHccCCCCCCHH--------HHHHHHHHHHHHc-CCCc----ccccc----cc--CCCCCCCCHHHHHHHHHHHHH
Q 000979 710 LLFSAWLRLSPEVDSE--------TRKMFIDEVMELV-ELNP----LRQSL----VG--LPGVSGLSTEQRKRLTIAVEL 770 (1202)
Q Consensus 710 l~~~~~~~~~~~~~~~--------~~~~~~~~~l~~l-~l~~----~~~~~----~~--~~~~~~LSgGqrqRv~ia~aL 770 (1202)
+.|+.. .... ..+...++.++.. ++.. ..|.. +. .+..++|+-.+ +.|+++|
T Consensus 103 ~~~g~~------~~~~~~~~~i~~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~D---ieilk~L 173 (427)
T 2qag_B 103 VGFGDQ------INKEDSYKPIVEFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLD---LVTMKKL 173 (427)
T ss_dssp ECCCC-------CCHHHHSHHHHHHHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHH---HHHHHHT
T ss_pred hhhhhc------cccchhhhHHHHHHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHH---HHHHHHH
Confidence 876431 1111 1122334445543 4331 12221 10 11124577776 7899999
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHH-HHhCCCEEEEEecC
Q 000979 771 VANPSIIFMDEPTSGLDARAAAIVMRTVRN-TVDTGRTVVCTIHQ 814 (1202)
Q Consensus 771 ~~~p~illlDEPtsgLD~~~~~~v~~~l~~-~~~~g~tvi~~~H~ 814 (1202)
..+++|+++||||..|.+.....+.+.+++ +...|..|+.++.+
T Consensus 174 ~~~~~vI~Vi~KtD~Lt~~E~~~l~~~I~~~L~~~gi~I~~is~~ 218 (427)
T 2qag_B 174 DSKVNIIPIIAKADAISKSELTKFKIKITSELVSNGVQIYQFPTD 218 (427)
T ss_dssp CSCSEEEEEESCGGGSCHHHHHHHHHHHHHHHBTTBCCCCCCC--
T ss_pred hhCCCEEEEEcchhccchHHHHHHHHHHHHHHHHcCCcEEecCCC
Confidence 999999999999999999999999999986 77779999888764
|
| >1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A* | Back alignment and structure |
|---|
Probab=99.36 E-value=2e-14 Score=153.93 Aligned_cols=128 Identities=17% Similarity=0.142 Sum_probs=85.2
Q ss_pred eEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCCcccccceEEEeecCCCCCCCCCH----HHHHH
Q 000979 636 SGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTI----YESLL 711 (1202)
Q Consensus 636 s~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~lTv----~e~l~ 711 (1202)
.-..++|++++|+||||||||||+++|+|..++....|.|.+++.+... ..++.++|++|++..++.+|+ .|++.
T Consensus 10 ~~~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~~~~-~e~~gi~y~fq~~~~f~~~~~~~~f~E~~~ 88 (219)
T 1s96_A 10 HHHMAQGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRP-GEVHGEHYFFVNHDEFKEMISRDAFLEHAE 88 (219)
T ss_dssp -----CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCT-TCCBTTTBEECCHHHHHHHHHTTCEEEEEE
T ss_pred cccCCCCcEEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCCCCCc-ccccCceEEECCHHHHHHHHhcCHHHHHHH
Confidence 4467899999999999999999999999976532368899998876543 234557899986433322222 11110
Q ss_pred HHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHH
Q 000979 712 FSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA 791 (1202)
Q Consensus 712 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~ 791 (1202)
+ .+. ..+.| +++ +.+++..+++++|| ||+.++
T Consensus 89 ~-----------------------------------~~~--~yg~~---~~~---v~~~l~~G~illLD-----LD~~~~ 120 (219)
T 1s96_A 89 V-----------------------------------FGN--YYGTS---REA---IEQVLATGVDVFLD-----IDWQGA 120 (219)
T ss_dssp E-----------------------------------TTE--EEEEE---HHH---HHHHHTTTCEEEEE-----CCHHHH
T ss_pred H-----------------------------------Hhc--cCCCC---HHH---HHHHHhcCCeEEEE-----ECHHHH
Confidence 0 000 00112 222 44566678999999 999999
Q ss_pred HHHHHHHHHHHhCCCEEEEEecCCC
Q 000979 792 AIVMRTVRNTVDTGRTVVCTIHQPS 816 (1202)
Q Consensus 792 ~~v~~~l~~~~~~g~tvi~~~H~~~ 816 (1202)
..+.+.+. ++.||++++|+++
T Consensus 121 ~~i~~~l~----~~~tI~i~th~~~ 141 (219)
T 1s96_A 121 QQIRQKMP----HARSIFILPPSKI 141 (219)
T ss_dssp HHHHHHCT----TCEEEEEECSSHH
T ss_pred HHHHHHcc----CCEEEEEECCCHH
Confidence 99998875 5899999999865
|
| >2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A* | Back alignment and structure |
|---|
Probab=99.36 E-value=4.8e-12 Score=136.04 Aligned_cols=153 Identities=19% Similarity=0.187 Sum_probs=98.7
Q ss_pred Eeecce-EEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCCcccccceEEEeecCCCCCCCCCHHHH
Q 000979 631 LLNGVS-GAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYES 709 (1202)
Q Consensus 631 iL~~vs-~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~lTv~e~ 709 (1202)
.|+++. +.+++|++++|+||||||||||++.|++ .. + .+. .|+..++.. +. +.
T Consensus 8 ~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~-~~-~--~~v-----------------~~i~~~~~~----~~-~~ 61 (220)
T 2cvh_A 8 SLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL-LS-G--KKV-----------------AYVDTEGGF----SP-ER 61 (220)
T ss_dssp HHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH-HH-C--SEE-----------------EEEESSCCC----CH-HH
T ss_pred HHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH-Hc-C--CcE-----------------EEEECCCCC----CH-HH
Confidence 467776 4899999999999999999999999998 21 1 122 233322211 11 11
Q ss_pred HHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHH--HHHHHHHHHHHhhC-CCEEEEeCCCCCC
Q 000979 710 LLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTE--QRKRLTIAVELVAN-PSIIFMDEPTSGL 786 (1202)
Q Consensus 710 l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgG--qrqRv~ia~aL~~~-p~illlDEPtsgL 786 (1202)
+.-.. +. ..... +++++.+.+ ...|++ ++++++.+++++.+ |+++++||||+.+
T Consensus 62 ~~~~~--~~-~~~~~-------~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~l~~~~~~lliiD~~~~~l 118 (220)
T 2cvh_A 62 LVQMA--ET-RGLNP-------EEALSRFIL-------------FTPSDFKEQRRVIGSLKKTVDSNFALVVVDSITAHY 118 (220)
T ss_dssp HHHHH--HT-TTCCH-------HHHHHHEEE-------------ECCTTTSHHHHHHHHHHHHCCTTEEEEEEECCCCCT
T ss_pred HHHHH--Hh-cCCCh-------HHHhhcEEE-------------EecCCHHHHHHHHHHHHHHhhcCCCEEEEcCcHHHh
Confidence 11000 00 01111 122222211 123444 36788899999986 9999999999999
Q ss_pred CHHH--------HHHHHHHHHHHHhC-CCEEEEEecCCCH------------HHHHhcceEEEEecC
Q 000979 787 DARA--------AAIVMRTVRNTVDT-GRTVVCTIHQPSI------------DIFEAFDELFLMKRG 832 (1202)
Q Consensus 787 D~~~--------~~~v~~~l~~~~~~-g~tvi~~~H~~~~------------~~~~~~d~v~~l~~g 832 (1202)
|+.. ...+++.|++++++ |.|||+++|.... .+...+|++++|.+.
T Consensus 119 ~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~vi~~~h~~~~~~~~~~~p~~~~~~~~~~d~vi~l~~~ 185 (220)
T 2cvh_A 119 RAEENRSGLIAELSRQLQVLLWIARKHNIPVIVINQVHFDSRTEMTKPVAEQTLGYRCKDILRLDKL 185 (220)
T ss_dssp TGGGGSSTTHHHHHHHHHHHHHHHHHHTCCEEEEECSSSSCTTSSCCSCCCHHHHHTSSEEEEEEEC
T ss_pred hhcCchHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeEEEcCCCCccccCCCcceeecCcEEEEEEEe
Confidence 9743 24566668887654 8999999997641 467789999999864
|
| >2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.34 E-value=3.7e-13 Score=154.11 Aligned_cols=83 Identities=16% Similarity=0.124 Sum_probs=72.6
Q ss_pred cc-ccCccccchhhHHHHHh---------cCCeEeeeeCCCccccHHHHHHHHHHHHHHhHhCCCEEEEEecCCChHHHh
Q 000979 69 IR-GISGGQKKRVTTGEMMV---------GPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYD 138 (1202)
Q Consensus 69 ~~-gLSGGQKqRvsIAraLv---------~~P~ILlLDEpTSGLDs~sa~~vv~~L~~~a~~~~tTiIiaihQp~~s~~~ 138 (1202)
.+ .+|||||||++||++|+ ++|+||+||||||+||+.....+++.+++.. .|+|+++| +..
T Consensus 262 ~~~~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~~----qt~i~~th-~~~---- 332 (359)
T 2o5v_A 262 ASDYASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASVP----QAIVTGTE-LAP---- 332 (359)
T ss_dssp HHHHCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHSS----EEEEEESS-CCT----
T ss_pred hhhhCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhcC----cEEEEEEe-ccc----
Confidence 45 79999999999999999 8999999999999999999999999997742 46666655 432
Q ss_pred hhcceEEecCCcEEEEcCcchH
Q 000979 139 LFDDIILLSDGQIVYQGPRELV 160 (1202)
Q Consensus 139 ~fD~IvvL~~G~vvy~G~~~el 160 (1202)
.+|++++|.+|++++.|+++++
T Consensus 333 ~~~~i~~l~~G~i~~~g~~~~~ 354 (359)
T 2o5v_A 333 GAALTLRAQAGRFTPVADEEMQ 354 (359)
T ss_dssp TCSEEEEEETTEEEECCCTTTS
T ss_pred cCCEEEEEECCEEEecCCHHHH
Confidence 8899999999999999998876
|
| >2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=99.34 E-value=1.9e-16 Score=166.53 Aligned_cols=170 Identities=15% Similarity=0.179 Sum_probs=108.9
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCCcccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCC
Q 000979 642 GVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPE 721 (1202)
Q Consensus 642 Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~ 721 (1202)
|++++|+||||||||||+++|++.. .|.+.++|.+.... ...++++|.....+..|+++++.+.+.......
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~~~-----~g~~~i~~d~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 73 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAAQL-----DNSAYIEGDIINHM---VVGGYRPPWESDELLALTWKNITDLTVNFLLAQ 73 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHS-----SSEEEEEHHHHHTT---CCTTCCCGGGCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CeEEEEECCCCCcHHHHHHHHhccc-----CCeEEEcccchhhh---hccccccCccchhHHHHHHHHHHHHHHHHHhcC
Confidence 7899999999999999999998732 35678887654221 124566776544445678888776542110000
Q ss_pred CCHHHHHHHHHHHHHHcCCCccccccccCCCCCCC--CHHHHHHHHHHH------HHhhCCCEEEEeCCCCCCCHHHHHH
Q 000979 722 VDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGL--STEQRKRLTIAV------ELVANPSIIFMDEPTSGLDARAAAI 793 (1202)
Q Consensus 722 ~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~L--SgGqrqRv~ia~------aL~~~p~illlDEPtsgLD~~~~~~ 793 (1202)
. ..+++.+......+ ..+.+ |+|++|++.++. +++.+|+...+|| +||+.....
T Consensus 74 ~---------~~ild~~~~~~~~~------~~~~~~~s~g~~~~~~~i~L~~~~e~l~~R~~~r~~d~---~ld~~~~~~ 135 (189)
T 2bdt_A 74 N---------DVVLDYIAFPDEAE------ALAQTVQAKVDDVEIRFIILWTNREELLRRDALRKKDE---QMGERCLEL 135 (189)
T ss_dssp C---------EEEEESCCCHHHHH------HHHHHHHHHCSSEEEEEEEEECCHHHHHHHTTTSCC-------CGGGGHH
T ss_pred C---------cEEEeeccCHHHHH------HHHHHHHhcccCCCeEEEEEeCCHHHHHHHHHhccccc---cCCHHHHHH
Confidence 0 00000000000000 01124 888888888888 9999999888884 899988888
Q ss_pred HHHHHHHHHhCCCEEEEEecC-CCHHHHHhcceEEEEecCCEEEEEcCCC
Q 000979 794 VMRTVRNTVDTGRTVVCTIHQ-PSIDIFEAFDELFLMKRGGQEIYVGPLG 842 (1202)
Q Consensus 794 v~~~l~~~~~~g~tvi~~~H~-~~~~~~~~~d~v~~l~~gG~~~~~G~~~ 842 (1202)
++.++.+.+.+.++|.++|+ ++ ++.+.+|+|+ . +|+++..|+++
T Consensus 136 -~~~~~~~~~~~~~ii~tsh~~~~-~~e~~~~~i~--~-~g~~~~~~~~~ 180 (189)
T 2bdt_A 136 -VEEFESKGIDERYFYNTSHLQPT-NLNDIVKNLK--T-NPRFIFCMAGD 180 (189)
T ss_dssp -HHHHHHTTCCTTSEEECSSSCGG-GHHHHHHHHH--H-CGGGSCC----
T ss_pred -HHHHhhcCCCccEEEeCCCCChh-hHHHHHHHHh--h-CCcEEEeecCC
Confidence 88888876567899999998 76 5888999998 4 68999999874
|
| >1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=99.33 E-value=4.1e-15 Score=156.47 Aligned_cols=143 Identities=15% Similarity=0.023 Sum_probs=89.4
Q ss_pred EEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCCcc-cccceEEEeecCCCCCCCCCHHHHHHHHHHc
Q 000979 638 AFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQE-TFARISGYCEQNDIHSPFVTIYESLLFSAWL 716 (1202)
Q Consensus 638 ~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~-~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~ 716 (1202)
.+++|++++|+||||||||||+++|+|... .|.|.++|.+.... ..++.++|++|+.. +..||.|++.+.+..
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~~~----~g~i~i~~d~~~~~~~~~~~~~~~~~~~~--~~~~v~~~l~~~~~~ 78 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIAEALANLPG----VPKVHFHSDDLWGYIKHGRIDPWLPQSHQ--QNRMIMQIAADVAGR 78 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHHHHHHTCSS----SCEEEECTTHHHHTCCSSCCCTTSSSHHH--HHHHHHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHhccC----CCeEEEcccchhhhhhcccccCCccchhh--hhHHHHHHHHHHHHH
Confidence 477999999999999999999999999843 46889998754221 11234567777543 457888988765422
Q ss_pred cCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHH
Q 000979 717 RLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR 796 (1202)
Q Consensus 717 ~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~ 796 (1202)
....... ..++.+++..++....+. +. ....+|+|++||+.++|++.++|+++ +|+.....+.+
T Consensus 79 ~~~~~~~-----~~~~~~~~~~~l~~~~~~--~~-~~~~ls~~~~~~v~~~R~~~r~~~~l--------ld~~~~~~~~~ 142 (191)
T 1zp6_A 79 YAKEGYF-----VILDGVVRPDWLPAFTAL--AR-PLHYIVLRTTAAEAIERCLDRGGDSL--------SDPLVVADLHS 142 (191)
T ss_dssp HHHTSCE-----EEECSCCCTTTTHHHHTT--CS-CEEEEEEECCHHHHHHHHHTTCTTSC--------CCHHHHHHHHH
T ss_pred HhccCCe-----EEEeccCcHHHHHHHHhc--CC-CeEEEEecCCHHHHHHHHHhcCCCcc--------CCHHHHHHHHH
Confidence 1000000 000000011111111100 00 12359999999999999999999887 68887777777
Q ss_pred HHHHHH
Q 000979 797 TVRNTV 802 (1202)
Q Consensus 797 ~l~~~~ 802 (1202)
.++.+.
T Consensus 143 ~~~~l~ 148 (191)
T 1zp6_A 143 QFADLG 148 (191)
T ss_dssp HTTCCG
T ss_pred HHhccC
Confidence 665543
|
| >1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.30 E-value=2.3e-12 Score=146.95 Aligned_cols=89 Identities=18% Similarity=0.253 Sum_probs=71.6
Q ss_pred ccccCccccchhhHHHHHh----cCCeEeeeeCCCccccHHHHHHHHHHHHHHhHhCCCEEEEEecCCChHHHhhhcce-
Q 000979 69 IRGISGGQKKRVTTGEMMV----GPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDI- 143 (1202)
Q Consensus 69 ~~gLSGGQKqRvsIAraLv----~~P~ILlLDEpTSGLDs~sa~~vv~~L~~~a~~~~tTiIiaihQp~~s~~~~fD~I- 143 (1202)
...||||||||++||++|+ .+|+||+|||||++||+.+...+.+.+++.+ .++|+|++.|. .++.+.+|++
T Consensus 217 ~~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~--~~~~vi~~tH~--~~~~~~~d~~~ 292 (322)
T 1e69_A 217 LSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENS--KHTQFIVITHN--KIVMEAADLLH 292 (322)
T ss_dssp GGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHT--TTSEEEEECCC--TTGGGGCSEEE
T ss_pred hhhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEECC--HHHHhhCceEE
Confidence 4689999999999999996 7899999999999999999999999998864 46788887776 4678899987
Q ss_pred -EEecCCc-EEEEcCcchHH
Q 000979 144 -ILLSDGQ-IVYQGPRELVL 161 (1202)
Q Consensus 144 -vvL~~G~-vvy~G~~~el~ 161 (1202)
++|.+|+ .+.....++..
T Consensus 293 ~v~~~~g~s~~~~~~~~~~~ 312 (322)
T 1e69_A 293 GVTMVNGVSAIVPVEVEKIL 312 (322)
T ss_dssp EEEESSSCEEEEECCC----
T ss_pred EEEEeCCEEEEEEEEcchhh
Confidence 7787774 45556655544
|
| >2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A* | Back alignment and structure |
|---|
Probab=99.30 E-value=4.2e-13 Score=155.57 Aligned_cols=130 Identities=18% Similarity=0.271 Sum_probs=95.6
Q ss_pred EeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceE-EEEEEEcCccCCcccccceEEEeecCCCCCCCCCHHHH
Q 000979 631 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYI-TGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYES 709 (1202)
Q Consensus 631 iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~-~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~lTv~e~ 709 (1202)
+|++++ +++|++++|+||||||||||+++|+|... +. +|.|...+.+.. ...++.+++|+|..
T Consensus 127 ~l~~l~--~~~g~~i~ivG~~GsGKTTll~~l~~~~~--~~~~g~I~~~e~~~e-~~~~~~~~~v~Q~~----------- 190 (372)
T 2ewv_A 127 KVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYIN--QTKSYHIITIEDPIE-YVFKHKKSIVNQRE----------- 190 (372)
T ss_dssp SHHHHT--TSSSEEEEEECSSSSSHHHHHHHHHHHHH--HHSCCEEEEEESSCC-SCCCCSSSEEEEEE-----------
T ss_pred HHHHHh--hcCCCEEEEECCCCCCHHHHHHHHHhhcC--cCCCcEEEEecccHh-hhhccCceEEEeee-----------
Confidence 567766 79999999999999999999999999654 22 578876665543 23445567787731
Q ss_pred HHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHH
Q 000979 710 LLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 789 (1202)
Q Consensus 710 l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~ 789 (1202)
+|+. ...+ +.+|+++|..+|+++++|||| |+.
T Consensus 191 ----------------------------~g~~-----------~~~~------~~~l~~~L~~~pd~illdE~~---d~e 222 (372)
T 2ewv_A 191 ----------------------------VGED-----------TKSF------ADALRAALREDPDVIFVGEMR---DLE 222 (372)
T ss_dssp ----------------------------BTTT-----------BSCS------HHHHHHHTTSCCSEEEESCCC---SHH
T ss_pred ----------------------------cCCC-----------HHHH------HHHHHHHhhhCcCEEEECCCC---CHH
Confidence 1211 0124 469999999999999999999 776
Q ss_pred HHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEe
Q 000979 790 AAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 830 (1202)
Q Consensus 790 ~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~ 830 (1202)
+.. ..++. +..|.+|+.|+|+.+ +.+.+||++.|.
T Consensus 223 ~~~---~~l~~-~~~g~~vi~t~H~~~--~~~~~~rl~~l~ 257 (372)
T 2ewv_A 223 TVE---TALRA-AETGHLVFGTLHTNT--AIDTIHRIVDIF 257 (372)
T ss_dssp HHH---HHHHH-HTTTCEEEECCCCCS--HHHHHHHHHHTS
T ss_pred HHH---HHHHH-HhcCCEEEEEECcch--HHHHHHHHHHhc
Confidence 643 34443 356899999999965 678889987764
|
| >2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.30 E-value=3.4e-13 Score=159.77 Aligned_cols=103 Identities=8% Similarity=-0.016 Sum_probs=83.0
Q ss_pred HHHHHHHHhCCcccccccccCCcccccCccccchhhHHHH--HhcCCeE----eeeeC-CCccccHHHHHHHHHHHHHHh
Q 000979 46 ITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEM--MVGPALA----LFMDE-ISTGLDSSTTFQIVNCLRQNI 118 (1202)
Q Consensus 46 ~v~~il~~lgL~~~~dT~VG~~~~~gLSGGQKqRvsIAra--Lv~~P~I----LlLDE-pTSGLDs~sa~~vv~~L~~~a 118 (1202)
.++.+++.+||.+..+ ..+|||||||||+|||+ |+.+|+| |+||| ||+|||.. ...+.+.++
T Consensus 217 ~~~~ll~~~gl~~~~~-------~~~LSgGq~qrlalAra~rL~~~p~i~~sGLlLDEpPts~LD~~-~~~l~~l~~--- 285 (460)
T 2npi_A 217 NKQPMVKNFGLERINE-------NKDLYLECISQLGQVVGQRLHLDPQVRRSGCIVDTPSISQLDEN-LAELHHIIE--- 285 (460)
T ss_dssp CBCCEECCCCSSSGGG-------CHHHHHHHHHHHHHHHHHHHHHCHHHHHSCEEEECCCGGGSCSS-CHHHHHHHH---
T ss_pred HHHHHHHHhCCCcccc-------hhhhhHHHHHHHHHHHHHHhccCcccCcceEEEeCCcccccChh-HHHHHHHHH---
Confidence 3455778888887665 35899999999999999 9999999 99999 99999998 433333333
Q ss_pred HhCCCEEEEEecCCC--h---HHHhhhcc-----eEEec-CCcEEEEcCcchHH
Q 000979 119 HINSGTAVISLLQPA--P---ETYDLFDD-----IILLS-DGQIVYQGPRELVL 161 (1202)
Q Consensus 119 ~~~~tTiIiaihQp~--~---s~~~~fD~-----IvvL~-~G~vvy~G~~~el~ 161 (1202)
+.+.|+|+.+|+++ . ...+++|+ |++|. +|+++ .|+++++.
T Consensus 286 -~~~~tviiVth~~~~~l~~~~~~~~~dr~~~~~vi~l~k~G~iv-~g~~~~~~ 337 (460)
T 2npi_A 286 -KLNVNIMLVLCSETDPLWEKVKKTFGPELGNNNIFFIPKLDGVS-AVDDVYKR 337 (460)
T ss_dssp -HTTCCEEEEECCSSCTHHHHHHHHHHHHHCGGGEEEECCCTTCC-CCCHHHHH
T ss_pred -HhCCCEEEEEccCchhhhHHHHHHhcccccCCEEEEEeCCCcEE-ECCHHHHh
Confidence 34677888889888 3 45588999 99999 99999 99987764
|
| >2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis} | Back alignment and structure |
|---|
Probab=99.27 E-value=5.7e-13 Score=153.99 Aligned_cols=137 Identities=18% Similarity=0.121 Sum_probs=100.3
Q ss_pred EeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCCc-ccccceEEEee-cCCCCCCCCCHHH
Q 000979 631 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ-ETFARISGYCE-QNDIHSPFVTIYE 708 (1202)
Q Consensus 631 iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~-~~~~~~~~~v~-q~~~~~~~lTv~e 708 (1202)
+++++|+.+++|++++|+||||||||||+++|+|..++ ..|.|.++|..... ...++.+++++ |++.+
T Consensus 164 ~~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~--~~g~I~ie~~~e~~~~~~~~~v~~v~~q~~~~-------- 233 (361)
T 2gza_A 164 YMSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIPF--DQRLITIEDVPELFLPDHPNHVHLFYPSEAKE-------- 233 (361)
T ss_dssp HHHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSCT--TSCEEEEESSSCCCCTTCSSEEEEECC-------------
T ss_pred HHHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCCC--CceEEEECCccccCccccCCEEEEeecCcccc--------
Confidence 45999999999999999999999999999999998764 37899999853211 22456788888 54221
Q ss_pred HHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Q 000979 709 SLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 788 (1202)
Q Consensus 709 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~ 788 (1202)
+++++..+|-.|+.++..+|+.+++|||+.
T Consensus 234 ----------------------------------------------~~~~~~t~~~~i~~~l~~~pd~~l~~e~r~---- 263 (361)
T 2gza_A 234 ----------------------------------------------EENAPVTAATLLRSCLRMKPTRILLAELRG---- 263 (361)
T ss_dssp ---------------------------------------------------CCHHHHHHHHTTSCCSEEEESCCCS----
T ss_pred ----------------------------------------------ccccccCHHHHHHHHHhcCCCEEEEcCchH----
Confidence 012233467778888888999999999986
Q ss_pred HHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecC
Q 000979 789 RAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 832 (1202)
Q Consensus 789 ~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~g 832 (1202)
..+.+.|+.+.....|++.++|..+ ....+||+..+..+
T Consensus 264 ---~~~~~~l~~l~~g~~~~l~t~H~~~--~~~~~~Rl~~l~~~ 302 (361)
T 2gza_A 264 ---GEAYDFINVAASGHGGSITSCHAGS--CELTFERLALMVLQ 302 (361)
T ss_dssp ---THHHHHHHHHHTTCCSCEEEEECSS--HHHHHHHHHHHHTT
T ss_pred ---HHHHHHHHHHhcCCCeEEEEECCCC--HHHHHHHHHHHHhc
Confidence 2455666666443457899999975 57889999999764
|
| >3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B* | Back alignment and structure |
|---|
Probab=99.26 E-value=1.3e-11 Score=143.62 Aligned_cols=78 Identities=24% Similarity=0.345 Sum_probs=68.5
Q ss_pred CCCCCHHHHHHH------HHHHHHhhC-CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcce
Q 000979 753 VSGLSTEQRKRL------TIAVELVAN-PSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDE 825 (1202)
Q Consensus 753 ~~~LSgGqrqRv------~ia~aL~~~-p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~ 825 (1202)
++.||||||||+ ++|++|+.+ |++|+|||||+|||+..+..+.+.|+++. ++.+||++||++. +...+|+
T Consensus 278 ~~~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~-~~~~vi~~th~~~--~~~~~d~ 354 (371)
T 3auy_A 278 IDNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVK-SIPQMIIITHHRE--LEDVADV 354 (371)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHHHHHHHHHHHCC-SCSEEEEEESCGG--GGGGCSE
T ss_pred hHhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHHHHHHHHHHHhc-cCCeEEEEEChHH--HHhhCCE
Confidence 357999999988 567899999 99999999999999999999999999874 4579999999974 5788999
Q ss_pred EEEEecCC
Q 000979 826 LFLMKRGG 833 (1202)
Q Consensus 826 v~~l~~gG 833 (1202)
+++|.+.|
T Consensus 355 ~~~l~k~~ 362 (371)
T 3auy_A 355 IINVKKDG 362 (371)
T ss_dssp EEEEEESS
T ss_pred EEEEEecC
Confidence 99998554
|
| >1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1 | Back alignment and structure |
|---|
Probab=99.26 E-value=6.9e-15 Score=171.11 Aligned_cols=166 Identities=8% Similarity=0.018 Sum_probs=97.8
Q ss_pred eecceEEEeC--CeEEEEEcCCCCCHHHHHHHHhCCCCCceEE----EEEEEcCccCCcccccceEEEeecCCCCCCCCC
Q 000979 632 LNGVSGAFRP--GVLTALMGVSGAGKTTLMDVLAGRKTGGYIT----GNITISGYPKKQETFARISGYCEQNDIHSPFVT 705 (1202)
Q Consensus 632 L~~vs~~i~~--Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~----G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~lT 705 (1202)
.+.|++.+++ |+.++|+||||||||||+++|+|... +.. |.+.+++... ..+...+...
T Consensus 158 ~~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~--~~~~~e~G~i~i~~~~~-------------~~~~~~~~~~ 222 (365)
T 1lw7_A 158 WKFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFN--TTSAWEYGREFVFEKLG-------------GDEQAMQYSD 222 (365)
T ss_dssp GGGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTT--CEEECCTTHHHHHHSSS-------------SCTTSSCTTT
T ss_pred hhhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhC--CCcchhhHHHHHHhhcC-------------CCcccCChhH
Confidence 5689999999 99999999999999999999999765 335 4444321100 0000011111
Q ss_pred HHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCC--CccccccccCCCCCCCCHHHHHHHHHHHHHh-hCCCEEEEeC-
Q 000979 706 IYESLLFSAWLRLSPEVDSETRKMFIDEVMELVEL--NPLRQSLVGLPGVSGLSTEQRKRLTIAVELV-ANPSIIFMDE- 781 (1202)
Q Consensus 706 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l--~~~~~~~~~~~~~~~LSgGqrqRv~ia~aL~-~~p~illlDE- 781 (1202)
. +++.+... + .......+.+.+-+ .+..++. ...+|+|++||..+++++. .+|++++|||
T Consensus 223 ~-~~I~~~~q---------~-~~~~~~t~~~nl~~~~~~~~~~~-----~~~~~~~~~~~~~i~~~~~~~~~~lllLdE~ 286 (365)
T 1lw7_A 223 Y-PQMALGHQ---------R-YIDYAVRHSHKIAFIDTDFITTQ-----AFCIQYEGKAHPFLDSMIKEYPFDVTILLKN 286 (365)
T ss_dssp H-HHHHHHHH---------H-HHHHHHHHCSSEEEESSCHHHHH-----HHHHHHHSCCCHHHHHHHHHSCCSEEEEEEC
T ss_pred H-HHHHHHHH---------H-HHHHHHhccCCEEEEeCCchHHH-----HHHHHHcCCCCHHHHHHHhhcCCCEEEECCC
Confidence 2 22332210 0 00000000000000 0111111 1235677788888888775 5999999999
Q ss_pred --CC------CCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCCHHHHHhcceEEEEe
Q 000979 782 --PT------SGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMK 830 (1202)
Q Consensus 782 --Pt------sgLD~~~~~~v~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~v~~l~ 830 (1202)
|+ .++|+..+..+.+.|+++.+ .|.++|+++|. + +..+++|++.+++
T Consensus 287 ~~p~~~~g~~~sld~~~r~~l~~~l~~l~~~~~~~ililde~-~-~~~r~~~~i~~i~ 342 (365)
T 1lw7_A 287 NTEWVDDGLRSLGSQKQRQQFQQLLKKLLDKYKVPYIEIESP-S-YLDRYNQVKAVIE 342 (365)
T ss_dssp CCC-----------CCSHHHHHHHHHHHHHGGGCCCEEEECS-S-HHHHHHHHHHHHH
T ss_pred CCCcccCCCcCCccHHHHHHHHHHHHHHHHHcCCCEEEeCCC-C-HHHHHHHHHHHHH
Confidence 65 58999999999999988754 48899999975 3 4566677776664
|
| >1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1 | Back alignment and structure |
|---|
Probab=99.24 E-value=1.7e-15 Score=172.38 Aligned_cols=156 Identities=14% Similarity=0.103 Sum_probs=97.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCCC------ceEEEEEEEcCccCCcc------------------cccceEEEe---e
Q 000979 643 VLTALMGVSGAGKTTLMDVLAGRKTG------GYITGNITISGYPKKQE------------------TFARISGYC---E 695 (1202)
Q Consensus 643 e~~al~G~sGaGKSTLl~~l~g~~~~------~~~~G~i~~~g~~~~~~------------------~~~~~~~~v---~ 695 (1202)
++++|+|+||||||||||.|.|...+ .+..|+|.++|.++... .+++.++++ +
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d~G~i~idg~~l~~~~~~~~el~~gCicc~~~~~~~~~l~~l~~~~ 84 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLIGDRATQIKTLTNGCICCSRSNELEDALLDLLDNL 84 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSSCCSCCEEEEEECTTSCEEEEETTSCEEECTTSCHHHHHHHHHHHH
T ss_pred cEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEecCcccCccHHHHhCCCCCEEEECCCceEEcccHHHHHHHHHHHhHH
Confidence 68999999999999999999986521 12357888888765321 223345555 5
Q ss_pred cCCCCCCCCCHHHHHHHHH--Hc-cCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhh
Q 000979 696 QNDIHSPFVTIYESLLFSA--WL-RLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVA 772 (1202)
Q Consensus 696 q~~~~~~~lTv~e~l~~~~--~~-~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~aL~~ 772 (1202)
|+..+.+..++.||..++. .+ +.-.......+...++.++..+++.+..+... ++|+||+||+..+++++.
T Consensus 85 q~~~~~~~~~v~E~~~l~~p~~~~~~~~~~~~~~~~~~l~~~l~~vd~~~~~~~~~------~ls~g~~Q~~~ad~ill~ 158 (318)
T 1nij_A 85 DKGNIQFDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMN------QFTIAQSQVGYADRILLT 158 (318)
T ss_dssp HHTSCCCSEEEEEEETTCCHHHHHHHHHHSHHHHHHEEEEEEEEEEETTTHHHHHH------HCHHHHHHHHTCSEEEEE
T ss_pred hcCCCCCCEEEEeCCCCCCHHHHHHHHhcCccccCeEEECCEEEEEEHHHHHHHHh------hchHHHHHHHhCCEEEEE
Confidence 6655555667766654320 00 00000000000001112233344444433331 589999999999899999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCC
Q 000979 773 NPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPS 816 (1202)
Q Consensus 773 ~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~ 816 (1202)
+|+++ ||| ..+.+.|+++. .+.||++++|++.
T Consensus 159 k~dl~--de~---------~~l~~~l~~l~-~~~~ii~~sh~~~ 190 (318)
T 1nij_A 159 KTDVA--GEA---------EKLHERLARIN-ARAPVYTVTHGDI 190 (318)
T ss_dssp CTTTC--SCT---------HHHHHHHHHHC-SSSCEEECCSSCC
T ss_pred CcccC--CHH---------HHHHHHHHHhC-CCCeEEEecccCC
Confidence 99987 998 67888888874 5899999999864
|
| >2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A | Back alignment and structure |
|---|
Probab=99.23 E-value=2.2e-14 Score=157.49 Aligned_cols=148 Identities=16% Similarity=0.181 Sum_probs=96.9
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHh---CCCCCceEEEEEEEcCccCCcccccceEEEeecCCCCCCCCCHHHHHHHHHHcc
Q 000979 641 PGVLTALMGVSGAGKTTLMDVLA---GRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESLLFSAWLR 717 (1202)
Q Consensus 641 ~Ge~~al~G~sGaGKSTLl~~l~---g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~ 717 (1202)
++++++|+||||||||||+++|+ |... +..|++.++|.+.. ....+.+.+++|+..+.+..|+.|++.....-.
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~--~~~G~i~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~v~~~l~~~l~~~ 102 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQH--LSSGHFLRENIKAS-TEVGEMAKQYIEKSLLVPDHVITRLMMSELENR 102 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCC--EEHHHHHHHHHHTT-CHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeE--ecHHHHHHHHHhcC-ChHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhc
Confidence 46899999999999999999999 8765 45677777665422 112233445677777788889999997643210
Q ss_pred C-----CCCCCHHHHHHHHHHHHHH--cC------------CCccccccccCCCCCCCCHHHHHHHHHHHHH-hhCCCEE
Q 000979 718 L-----SPEVDSETRKMFIDEVMEL--VE------------LNPLRQSLVGLPGVSGLSTEQRKRLTIAVEL-VANPSII 777 (1202)
Q Consensus 718 ~-----~~~~~~~~~~~~~~~~l~~--l~------------l~~~~~~~~~~~~~~~LSgGqrqRv~ia~aL-~~~p~il 777 (1202)
. ........ ..++.+.+. ++ +....++. +..||| |+ ++| +.+|+++
T Consensus 103 ~~~~~il~g~~~~~--~~~~~l~~~~~~~~vi~L~~~~~~~l~r~~~r~-----~~~lSg----rv---~al~~~~P~~l 168 (246)
T 2bbw_A 103 RGQHWLLDGFPRTL--GQAEALDKICEVDLVISLNIPFETLKDRLSRRW-----IHPPSG----RV---YNLDFNPPHVH 168 (246)
T ss_dssp TTSCEEEESCCCSH--HHHHHHHTTCCCCEEEEEECCHHHHHHHHHTEE-----EETTTT----EE---EETTTSCCSST
T ss_pred CCCeEEEECCCCCH--HHHHHHHhhcCCCEEEEEECCHHHHHHHHHcCC-----CcCCCC----Cc---cccccCCCccc
Confidence 0 00111111 112222211 12 11112222 245898 66 777 9999999
Q ss_pred EEe----CCCCCCCHHHHHHHHHHHHHHHhCC
Q 000979 778 FMD----EPTSGLDARAAAIVMRTVRNTVDTG 805 (1202)
Q Consensus 778 llD----EPtsgLD~~~~~~v~~~l~~~~~~g 805 (1202)
+|| |||++||..+...+.+.|+++.+++
T Consensus 169 llD~~~~EP~~~ld~~~~~~i~~~l~~~~~~~ 200 (246)
T 2bbw_A 169 GIDDVTGEPLVQQEDDKPEAVAARLRQYKDVA 200 (246)
T ss_dssp TBCTTTCCBCBCCGGGSHHHHHHHHHHHHHHH
T ss_pred ccccccccccccCCCCcHHHHHHHHHHHHHhH
Confidence 999 9999999999999999998886543
|
| >2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V | Back alignment and structure |
|---|
Probab=99.22 E-value=4.5e-12 Score=144.23 Aligned_cols=122 Identities=17% Similarity=0.119 Sum_probs=84.1
Q ss_pred eecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEc-CccCCcccccceEEEeecCCCCCCCCCHHHHH
Q 000979 632 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITIS-GYPKKQETFARISGYCEQNDIHSPFVTIYESL 710 (1202)
Q Consensus 632 L~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~-g~~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l 710 (1202)
+++++.. .+|++++|+||||||||||+|+|+|.... +..|+|.++ |.+.. ...++.+++++|+..+++..||+|+.
T Consensus 206 l~~L~~~-~~G~~~~lvG~sG~GKSTLln~L~g~~~~-~~~G~I~~~~G~g~~-tt~~~~i~~v~q~~~l~dtpgv~e~~ 282 (358)
T 2rcn_A 206 LKPLEEA-LTGRISIFAGQSGVGKSSLLNALLGLQNE-ILTNDVSNVSGLGQH-TTTAARLYHFPHGGDVIDSPGVREFG 282 (358)
T ss_dssp HHHHHHH-HTTSEEEEECCTTSSHHHHHHHHHCCSSC-CCCC--------------CCCEEEECTTSCEEEECHHHHTCC
T ss_pred HHHHHHh-cCCCEEEEECCCCccHHHHHHHHhccccc-cccCCccccCCCCcc-ceEEEEEEEECCCCEecCcccHHHhh
Confidence 3444443 47999999999999999999999997641 236888876 65432 23456789999998888888998841
Q ss_pred HHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHH
Q 000979 711 LFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVEL 770 (1202)
Q Consensus 711 ~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~aL 770 (1202)
+ ...+.++..+.+.++++.+++.+..|... .++| ||+||++||+++
T Consensus 283 -------l-~~l~~~e~~~~~~e~l~~~gl~~f~~~~~-----~~lS-G~~~r~ala~gl 328 (358)
T 2rcn_A 283 -------L-WHLEPEQITQGFVEFHDYLGHCKYRDCKH-----DADP-GCAIREAVENGA 328 (358)
T ss_dssp -------C-CCCCHHHHHHTSGGGGGGTTCSSSTTCCS-----SSCT-TCHHHHHHHHTS
T ss_pred -------h-cCCCHHHHHHHHHHHHHHcCCchhcCCCc-----ccCC-HHHHHHHHHhcC
Confidence 1 13445555566788899999987777653 4699 999999999864
|
| >4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.20 E-value=1e-11 Score=150.92 Aligned_cols=77 Identities=14% Similarity=0.202 Sum_probs=68.0
Q ss_pred cccc-CccccchhhHHHHHhcCC--eEeeeeCCCccccHHHHHHHHHHHHHHhHhCCCEEEEEecCCChHHHhhhcceEE
Q 000979 69 IRGI-SGGQKKRVTTGEMMVGPA--LALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIIL 145 (1202)
Q Consensus 69 ~~gL-SGGQKqRvsIAraLv~~P--~ILlLDEpTSGLDs~sa~~vv~~L~~~a~~~~tTiIiaihQp~~s~~~~fD~Ivv 145 (1202)
...| ||||||||+||++|+.+| ++|+|||||+|||..++..|.+.|++++. ++|||+++|. +++...+|++++
T Consensus 394 ~~~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~--~~~vi~itH~--~~~~~~~d~~~~ 469 (517)
T 4ad8_A 394 LSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLAD--TRQVLVVTHL--AQIAARAHHHYK 469 (517)
T ss_dssp SSSSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHH--HSEEEEECCC--HHHHHHSSEEEE
T ss_pred HHhcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhC--CCEEEEEecC--HHHHHhCCEEEE
Confidence 3456 999999999999999999 99999999999999999999999999864 6788877776 457778999999
Q ss_pred ecCC
Q 000979 146 LSDG 149 (1202)
Q Consensus 146 L~~G 149 (1202)
|.+|
T Consensus 470 ~~~~ 473 (517)
T 4ad8_A 470 VEKQ 473 (517)
T ss_dssp EECC
T ss_pred Eecc
Confidence 9665
|
| >1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=99.19 E-value=1.2e-11 Score=127.88 Aligned_cols=79 Identities=6% Similarity=-0.034 Sum_probs=64.4
Q ss_pred CcccccCccccchhhHHHH-----HhcCCeEeeeeC--CCccccHHHHHHHHHHHHHHhHhCCCEEEEEec--CCChHHH
Q 000979 67 EMIRGISGGQKKRVTTGEM-----MVGPALALFMDE--ISTGLDSSTTFQIVNCLRQNIHINSGTAVISLL--QPAPETY 137 (1202)
Q Consensus 67 ~~~~gLSGGQKqRvsIAra-----Lv~~P~ILlLDE--pTSGLDs~sa~~vv~~L~~~a~~~~tTiIiaih--Qp~~s~~ 137 (1202)
.....||||||||++||++ +..+|++++||| ||++||..+...+.+.+++ .++|+++++| |....+-
T Consensus 72 ~~~~~lSgG~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~~~~l~~~l~~----~~~~~i~~~H~~h~~~~~~ 147 (178)
T 1ye8_A 72 SYGVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHD----PNVNVVATIPIRDVHPLVK 147 (178)
T ss_dssp TEEECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHHHTC----TTSEEEEECCSSCCSHHHH
T ss_pred ccccCcCHHHHHHHHHHhhccccccccCCCEEEEeCCCCcccCCHHHHHHHHHHHhc----CCCeEEEEEccCCCchHHH
Confidence 4456799999999999996 999999999999 9999999888777777754 5678999998 4555555
Q ss_pred hhhcceEEecCCcEEE
Q 000979 138 DLFDDIILLSDGQIVY 153 (1202)
Q Consensus 138 ~~fD~IvvL~~G~vvy 153 (1202)
+.+|+ .+|++++
T Consensus 148 ~i~~r----~~~~i~~ 159 (178)
T 1ye8_A 148 EIRRL----PGAVLIE 159 (178)
T ss_dssp HHHTC----TTCEEEE
T ss_pred HHHhc----CCcEEEE
Confidence 66676 5677766
|
| >2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A | Back alignment and structure |
|---|
Probab=99.19 E-value=9.2e-13 Score=154.34 Aligned_cols=153 Identities=14% Similarity=0.126 Sum_probs=101.7
Q ss_pred eecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCCcc-------c--ccceEEEeecCCCCCC
Q 000979 632 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQE-------T--FARISGYCEQNDIHSP 702 (1202)
Q Consensus 632 L~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~-------~--~~~~~~~v~q~~~~~~ 702 (1202)
-+++|+++++|++++|+||||||||||+++|+|...+ ..|+|.++|.+.... . .++.++|++|+..+.+
T Consensus 283 ~~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~--~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~p 360 (503)
T 2yhs_A 283 DEPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQ--QGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADS 360 (503)
T ss_dssp BCCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHHH--TTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCCH
T ss_pred CCCceeeccCCeEEEEECCCcccHHHHHHHHHHHhhh--cCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcCH
Confidence 3688999999999999999999999999999997542 258899987654321 1 2456899999988888
Q ss_pred CCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHh-hCCC-EEEEe
Q 000979 703 FVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELV-ANPS-IIFMD 780 (1202)
Q Consensus 703 ~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~aL~-~~p~-illlD 780 (1202)
.+|+++|+.++..-. .+ --+++..|..+... .+-..-+|++.+++++. ..|. +||..
T Consensus 361 ~~tV~e~l~~a~~~~----~D--------vVLIDTaGrl~~~~---------~lm~EL~kiv~iar~l~~~~P~evLLvL 419 (503)
T 2yhs_A 361 ASVIFDAIQAAKARN----ID--------VLIADTAGRLQNKS---------HLMEELKKIVRVMKKLDVEAPHEVMLTI 419 (503)
T ss_dssp HHHHHHHHHHHHHTT----CS--------EEEECCCCSCCCHH---------HHHHHHHHHHHHHHTTCTTCSSEEEEEE
T ss_pred HHHHHHHHHHHHhcC----CC--------EEEEeCCCccchhh---------hHHHHHHHHHHHHHHhccCCCCeeEEEe
Confidence 899999998864211 00 00112222221111 12223357888888764 4574 55555
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEec
Q 000979 781 EPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIH 813 (1202)
Q Consensus 781 EPtsgLD~~~~~~v~~~l~~~~~-~g~tvi~~~H 813 (1202)
.||+|.|.. +.++.+.+ -|.|.|++||
T Consensus 420 DattGq~al------~~ak~f~~~~~itgvIlTK 447 (503)
T 2yhs_A 420 DASTGQNAV------SQAKLFHEAVGLTGITLTK 447 (503)
T ss_dssp EGGGTHHHH------HHHHHHHHHTCCSEEEEEC
T ss_pred cCcccHHHH------HHHHHHHhhcCCCEEEEEc
Confidence 588886554 33444433 4889999999
|
| >1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=99.18 E-value=1.8e-11 Score=133.67 Aligned_cols=152 Identities=19% Similarity=0.236 Sum_probs=84.3
Q ss_pred EEEeCCeEEEEEcCCCCCHHHHHHHHhC--CCCC---ceEEEEEEEcCccCCcccccceEEEeecCCCCCCCCCHHHHHH
Q 000979 637 GAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTG---GYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESLL 711 (1202)
Q Consensus 637 ~~i~~Ge~~al~G~sGaGKSTLl~~l~g--~~~~---~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~ 711 (1202)
+-+++|++++|+||||||||||++.|++ ...+ +...|.+++++.+. . ...+-..
T Consensus 19 ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~-----------------~----~~~~~~~ 77 (243)
T 1n0w_A 19 GGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGT-----------------F----RPERLLA 77 (243)
T ss_dssp TSEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSC-----------------C----CHHHHHH
T ss_pred CCCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCC-----------------c----CHHHHHH
Confidence 5799999999999999999999999998 3321 01134555554321 0 0101000
Q ss_pred HHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHH-HHHHHHHh--hCCCEEEEeCCCCCCCH
Q 000979 712 FSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKR-LTIAVELV--ANPSIIFMDEPTSGLDA 788 (1202)
Q Consensus 712 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqR-v~ia~aL~--~~p~illlDEPtsgLD~ 788 (1202)
....+ .... +++++.+.+ ....+..+... +.-+.+++ .+|+++++|||++.+|+
T Consensus 78 ~~~~~----g~~~-------~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~lliiD~~~~~~~~ 134 (243)
T 1n0w_A 78 VAERY----GLSG-------SDVLDNVAY------------ARAFNTDHQTQLLYQASAMMVESRYALLIVDSATALYRT 134 (243)
T ss_dssp HHHHT----TCCH-------HHHHHTEEE------------EECCSHHHHHHHHHHHHHHHHHSCEEEEEEETSSGGGC-
T ss_pred HHHHc----CCCH-------HHHhhCeEE------------EecCCHHHHHHHHHHHHHHHhcCCceEEEEeCchHHHHH
Confidence 11111 1111 112221111 01245554432 33344444 48999999999999998
Q ss_pred H-------H-----HHHHHHHHHHHHhC-CCEEEEEecCCCHH------------------HHHhcceEEEEecC
Q 000979 789 R-------A-----AAIVMRTVRNTVDT-GRTVVCTIHQPSID------------------IFEAFDELFLMKRG 832 (1202)
Q Consensus 789 ~-------~-----~~~v~~~l~~~~~~-g~tvi~~~H~~~~~------------------~~~~~d~v~~l~~g 832 (1202)
. . ...+++.|++++++ |.|||+++|..... +...+|++++|.++
T Consensus 135 ~~~~~~~~~~r~~~~~~~~~~l~~~~~~~~~tvi~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~d~vi~l~~~ 209 (243)
T 1n0w_A 135 DYSGRGELSARQMHLARFLRMLLRLADEFGVAVVITNQVVAQVDGAAMFAADPKKPIGGNIIAHASTTRLYLRKG 209 (243)
T ss_dssp ------CHHHHHHHHHHHHHHHHHHHHHHCCEEEEEC-------------------------CCTTCEEEEEEEC
T ss_pred HhcCCccHHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeeeecCCCccccCCCcccCCccChhhhcCcEEEEEEEc
Confidence 5 3 34566666666654 99999999965421 11268999999863
|
| >2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.17 E-value=1.2e-13 Score=141.32 Aligned_cols=138 Identities=16% Similarity=0.203 Sum_probs=84.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCCC-ceEEEEEEEcCccCCc------cccc-ceEE----EeecCCCCCCCCCHHHHH
Q 000979 643 VLTALMGVSGAGKTTLMDVLAGRKTG-GYITGNITISGYPKKQ------ETFA-RISG----YCEQNDIHSPFVTIYESL 710 (1202)
Q Consensus 643 e~~al~G~sGaGKSTLl~~l~g~~~~-~~~~G~i~~~g~~~~~------~~~~-~~~~----~v~q~~~~~~~lTv~e~l 710 (1202)
++++|+|+||||||||+++|+|...+ +...|.|.++|.++.. ..++ +.+| +++|+..++ +++
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~i~~~~~~~~d~~r~~~ig~~~~~~~~~~~~~----i~~-- 76 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHGDFEIDKEGKDSWKIYNSGADVVIASPVKLAF----IRR-- 76 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC------------CHHHHHHHHTCEEEEECSSEEEE----EEE--
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCcccccCCccchhHHHHHhcCCceEEECCCcEEE----Eec--
Confidence 58999999999999999999996442 2236999999987321 2333 3455 788876544 000
Q ss_pred HHHHHccCCCCCCHHHHHHHHHHHHHH-cCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEE-------EEeCC
Q 000979 711 LFSAWLRLSPEVDSETRKMFIDEVMEL-VELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSII-------FMDEP 782 (1202)
Q Consensus 711 ~~~~~~~~~~~~~~~~~~~~~~~~l~~-l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~il-------llDEP 782 (1202)
.+.+ ....++++++. +. -.|+.++. +||||||||++||||++.+|++. .=|.|
T Consensus 77 -----------~~~~-~~a~l~~~i~~~l~---g~dt~i~E----glSgGq~qri~lARall~~p~i~~~~~~a~~~~~~ 137 (171)
T 2f1r_A 77 -----------VSEE-EGNDLDWIYERYLS---DYDLVITE----GFSKAGKDRIVVVKKPEEVEHFRQGRILAVVCDER 137 (171)
T ss_dssp -----------CCHH-HHTCHHHHHHHHTT---TCSEEEEE----SCGGGCCCEEEECSSGGGGGGGCSSCEEEEECSSC
T ss_pred -----------CChh-hhhCHHHHHHhhCC---CCCEEEEC----CcCCCCCcEEEEEecccCCCccCccceEEEEecCC
Confidence 0111 11134556655 43 35777763 59999999999999999999873 22444
Q ss_pred CCC---CCHHHHHHHHHHHHHHHhCC
Q 000979 783 TSG---LDARAAAIVMRTVRNTVDTG 805 (1202)
Q Consensus 783 tsg---LD~~~~~~v~~~l~~~~~~g 805 (1202)
..+ +|......+.+.+.+..++|
T Consensus 138 ~~~~~~f~~~~~~~~a~~i~~~~~~~ 163 (171)
T 2f1r_A 138 VDGHKWFRRDEVERIAEFILSLLREG 163 (171)
T ss_dssp CSSSCEECTTCHHHHHHHHHHHHTC-
T ss_pred cccCcccCcccHHHHHHHHHHHHhcc
Confidence 322 33444566777765555554
|
| >1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A | Back alignment and structure |
|---|
Probab=99.17 E-value=8.4e-13 Score=133.39 Aligned_cols=79 Identities=24% Similarity=0.104 Sum_probs=64.6
Q ss_pred ceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCCcccccceEEEeecCCCCCCCCCHH
Q 000979 628 KLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIY 707 (1202)
Q Consensus 628 ~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~lTv~ 707 (1202)
++.+++++|+++++|++++|+||||||||||+|+|+|.. + .+|+|.++|.++......+ .+++|+..++ .+||.
T Consensus 19 ~~~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~--~~G~V~~~g~~i~~~~~~~--~~~~q~~~l~-~ltv~ 92 (158)
T 1htw_A 19 KKFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI-G--HQGNVKSPTYTLVEEYNIA--GKMIYHFDLY-RLADP 92 (158)
T ss_dssp HHHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT-T--CCSCCCCCTTTCEEEEEET--TEEEEEEECT-TCSCT
T ss_pred HHHHHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC-C--CCCeEEECCEeeeeeccCC--Ccceeccccc-cCCcH
Confidence 346899999999999999999999999999999999976 3 3689999998764221111 2789988888 89999
Q ss_pred HHHHH
Q 000979 708 ESLLF 712 (1202)
Q Consensus 708 e~l~~ 712 (1202)
|++.+
T Consensus 93 e~l~~ 97 (158)
T 1htw_A 93 EELEF 97 (158)
T ss_dssp THHHH
T ss_pred HHHHH
Confidence 99965
|
| >3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B* | Back alignment and structure |
|---|
Probab=99.16 E-value=3.1e-11 Score=140.40 Aligned_cols=101 Identities=19% Similarity=0.216 Sum_probs=79.1
Q ss_pred hhHHHHHHHHHhCCcc-------cccccccC----CcccccCccccchh------hHHHHHhcC-CeEeeeeCCCccccH
Q 000979 43 ANVITDYYLKVLGLDV-------CADTMVGD----EMIRGISGGQKKRV------TTGEMMVGP-ALALFMDEISTGLDS 104 (1202)
Q Consensus 43 ~~~~v~~il~~lgL~~-------~~dT~VG~----~~~~gLSGGQKqRv------sIAraLv~~-P~ILlLDEpTSGLDs 104 (1202)
..+.++.+++.+++.+ ..+..+.+ .....+|||||||+ ++|++|..+ |++|+|||||+|||.
T Consensus 241 ~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~ 320 (371)
T 3auy_A 241 IQKYLNEAFSEFDLPYSFVELTKDFEVRVHAPNGVLTIDNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDE 320 (371)
T ss_dssp HHHHHHHHHHHTTCSCSCEEECTTCCEEEEETTEEECGGGSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCH
T ss_pred HHHHHHHHHHHhcCcceEEEEccceeEEEEcCCCccchHhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCH
Confidence 3455677888888876 22333332 22357999999988 567999999 999999999999999
Q ss_pred HHHHHHHHHHHHHhHhCCCEEEEEecCCChHHHhhhcceEEec
Q 000979 105 STTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLS 147 (1202)
Q Consensus 105 ~sa~~vv~~L~~~a~~~~tTiIiaihQp~~s~~~~fD~IvvL~ 147 (1202)
.++..+.+.|+++. .+.+|+++.|.| ++...+|++++|.
T Consensus 321 ~~~~~l~~~l~~~~--~~~~vi~~th~~--~~~~~~d~~~~l~ 359 (371)
T 3auy_A 321 NRRAKLAEIFRKVK--SIPQMIIITHHR--ELEDVADVIINVK 359 (371)
T ss_dssp HHHHHHHHHHHHCC--SCSEEEEEESCG--GGGGGCSEEEEEE
T ss_pred HHHHHHHHHHHHhc--cCCeEEEEEChH--HHHhhCCEEEEEE
Confidence 99999999998853 345788887875 4678999999997
|
| >3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B | Back alignment and structure |
|---|
Probab=99.16 E-value=1.9e-11 Score=140.48 Aligned_cols=76 Identities=20% Similarity=0.317 Sum_probs=66.7
Q ss_pred ccccCccccc------hhhHHHHHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHhHhCCCEEEEEecCCChHHHhhhcc
Q 000979 69 IRGISGGQKK------RVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDD 142 (1202)
Q Consensus 69 ~~gLSGGQKq------RvsIAraLv~~P~ILlLDEpTSGLDs~sa~~vv~~L~~~a~~~~tTiIiaihQp~~s~~~~fD~ 142 (1202)
...||||||| |+++|++|+.+|++|+|||||+|||+.+...+.+.|+++.. .++|++++.|. .++...+|+
T Consensus 246 ~~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~-~~~~vi~~sH~--~~~~~~~d~ 322 (339)
T 3qkt_A 246 LTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLK-KIPQVILVSHD--EELKDAADH 322 (339)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGG-GSSEEEEEESC--GGGGGGCSE
T ss_pred hHHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-cCCEEEEEECh--HHHHHhCCE
Confidence 4679999999 67888999999999999999999999999999999998764 46788887776 467899999
Q ss_pred eEEec
Q 000979 143 IILLS 147 (1202)
Q Consensus 143 IvvL~ 147 (1202)
|++|.
T Consensus 323 ~~~l~ 327 (339)
T 3qkt_A 323 VIRIS 327 (339)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 99985
|
| >1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1 | Back alignment and structure |
|---|
Probab=99.15 E-value=1.7e-12 Score=151.41 Aligned_cols=171 Identities=13% Similarity=0.129 Sum_probs=97.5
Q ss_pred eecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCCcccccceEEEeecCCCCCCCCCHHHHHH
Q 000979 632 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESLL 711 (1202)
Q Consensus 632 L~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~ 711 (1202)
-+++++++++|+.++|+|+|||||||||++|+|... .+.+.+.. .....++++.+++. ..+++.++.-
T Consensus 147 ~~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~~--------~i~~~~ft--Tl~p~~G~V~~~~~--~~~~l~DtpG 214 (416)
T 1udx_A 147 KRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAHP--------KIAPYPFT--TLSPNLGVVEVSEE--ERFTLADIPG 214 (416)
T ss_dssp EEEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSCC--------EECCCTTC--SSCCEEEEEECSSS--CEEEEEECCC
T ss_pred EeeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCCc--------cccCcccc--eecceeeEEEecCc--ceEEEEeccc
Confidence 479999999999999999999999999999998742 12333221 11223455554430 0011111100
Q ss_pred HHHHccCCCCCCHHHHH--HHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHH
Q 000979 712 FSAWLRLSPEVDSETRK--MFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 789 (1202)
Q Consensus 712 ~~~~~~~~~~~~~~~~~--~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~ 789 (1202)
+...............+ ++++.++..+++. +.. ...||+|++||+++|++|+.+|.+|++ +++|..
T Consensus 215 li~~a~~~~~L~~~fl~~~era~~lL~vvDls---~~~-----~~~ls~g~~el~~la~aL~~~P~ILVl----NKlDl~ 282 (416)
T 1udx_A 215 IIEGASEGKGLGLEFLRHIARTRVLLYVLDAA---DEP-----LKTLETLRKEVGAYDPALLRRPSLVAL----NKVDLL 282 (416)
T ss_dssp CCCCGGGSCCSCHHHHHHHTSSSEEEEEEETT---SCH-----HHHHHHHHHHHHHHCHHHHHSCEEEEE----ECCTTS
T ss_pred cccchhhhhhhhHHHHHHHHHHHhhhEEeCCc---cCC-----HHHHHHHHHHHHHHhHHhhcCCEEEEE----ECCChh
Confidence 00000000011111000 0112223333332 111 246999999999999999999999999 999998
Q ss_pred HHHHHHHHHHHH-HhCCCEEEEEecCCCHHHHHhcceEE
Q 000979 790 AAAIVMRTVRNT-VDTGRTVVCTIHQPSIDIFEAFDELF 827 (1202)
Q Consensus 790 ~~~~v~~~l~~~-~~~g~tvi~~~H~~~~~~~~~~d~v~ 827 (1202)
.+ ..++.+++. .+.|.+++.++......+.++++.+.
T Consensus 283 ~~-~~~~~l~~~l~~~g~~vi~iSA~~g~gi~eL~~~i~ 320 (416)
T 1udx_A 283 EE-EAVKALADALAREGLAVLPVSALTGAGLPALKEALH 320 (416)
T ss_dssp CH-HHHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHHHH
T ss_pred hH-HHHHHHHHHHHhcCCeEEEEECCCccCHHHHHHHHH
Confidence 76 444444444 34577776655433335666666554
|
| >2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B} | Back alignment and structure |
|---|
Probab=99.14 E-value=2.2e-11 Score=121.97 Aligned_cols=45 Identities=9% Similarity=0.178 Sum_probs=37.3
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCE-EEEEecCCC
Q 000979 771 VANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT-VVCTIHQPS 816 (1202)
Q Consensus 771 ~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~t-vi~~~H~~~ 816 (1202)
+.+|++|++|||++ +|...+..+.++++++.++|++ +|+++|.+.
T Consensus 81 ~~~~~lLilDE~~~-~~~~~~~~l~~li~~~~~~g~~~iiits~~~p 126 (149)
T 2kjq_A 81 AFEAEYLAVDQVEK-LGNEEQALLFSIFNRFRNSGKGFLLLGSEYTP 126 (149)
T ss_dssp GGGCSEEEEESTTC-CCSHHHHHHHHHHHHHHHHTCCEEEEEESSCT
T ss_pred HhCCCEEEEeCccc-cChHHHHHHHHHHHHHHHcCCcEEEEECCCCH
Confidence 56899999999998 6655588899999988777888 888998643
|
| >1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.14 E-value=6.7e-11 Score=140.63 Aligned_cols=75 Identities=17% Similarity=0.224 Sum_probs=68.5
Q ss_pred CCCHHHHHHHHHHHHHh----hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEe
Q 000979 755 GLSTEQRKRLTIAVELV----ANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 830 (1202)
Q Consensus 755 ~LSgGqrqRv~ia~aL~----~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~ 830 (1202)
.||||||||++||++|+ .+|++++|||||++||+..+..+.+.|+++.++|.++|++||++ ...+.+|+++.+.
T Consensus 333 ~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~~ii~th~~--~~~~~~d~~~~~~ 410 (430)
T 1w1w_A 333 YLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKN--TMFEKSDALVGVY 410 (430)
T ss_dssp GSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCH--HHHTTCSEEEEEE
T ss_pred cCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHHHHhcCCCEEEEEECCH--HHHHhCCEEEEEE
Confidence 49999999999999999 58999999999999999999999999998865688999999994 5678899999997
Q ss_pred c
Q 000979 831 R 831 (1202)
Q Consensus 831 ~ 831 (1202)
.
T Consensus 411 ~ 411 (430)
T 1w1w_A 411 R 411 (430)
T ss_dssp E
T ss_pred E
Confidence 4
|
| >3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A* | Back alignment and structure |
|---|
Probab=99.12 E-value=1.2e-11 Score=128.69 Aligned_cols=47 Identities=13% Similarity=0.195 Sum_probs=42.2
Q ss_pred hhCCCEEEEeCCCC-CCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCH
Q 000979 771 VANPSIIFMDEPTS-GLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSI 817 (1202)
Q Consensus 771 ~~~p~illlDEPts-gLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~ 817 (1202)
+.+|++|+||||++ ++|+..+..+.+++.+..++|+++|++||.+..
T Consensus 98 ~~~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~~~~ 145 (180)
T 3ec2_A 98 VLNSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNYSLQ 145 (180)
T ss_dssp HHTCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCCCSC
T ss_pred hcCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCCChh
Confidence 45999999999995 999999999999998887789999999998754
|
| >3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B* | Back alignment and structure |
|---|
Probab=99.10 E-value=4e-12 Score=144.01 Aligned_cols=143 Identities=13% Similarity=0.096 Sum_probs=95.0
Q ss_pred EeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCCcc-------cccc--eEEEeecCCCCCCCCCHHHH
Q 000979 639 FRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQE-------TFAR--ISGYCEQNDIHSPFVTIYES 709 (1202)
Q Consensus 639 i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~-------~~~~--~~~~v~q~~~~~~~lTv~e~ 709 (1202)
.++|++++|+||||||||||++.|+|... +..|+|.++|.+.... .+++ .+.+++|+..+.|.+||+||
T Consensus 126 ~~~g~vi~lvG~nGaGKTTll~~Lag~l~--~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~ 203 (328)
T 3e70_C 126 AEKPYVIMFVGFNGSGKTTTIAKLANWLK--NHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDA 203 (328)
T ss_dssp SCSSEEEEEECCTTSSHHHHHHHHHHHHH--HTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHH--hcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHH
Confidence 47899999999999999999999999654 2357889988875321 1122 34599999999999999999
Q ss_pred HHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHH
Q 000979 710 LLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 789 (1202)
Q Consensus 710 l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~ 789 (1202)
+.++..... + ..+++..|..+..+. =.++.-.|++++..++.+++||.+| |
T Consensus 204 l~~~~~~~~--d----------~vliDtaG~~~~~~~------------l~~eL~~i~ral~~de~llvLDa~t-~---- 254 (328)
T 3e70_C 204 IQHAKARGI--D----------VVLIDTAGRSETNRN------------LMDEMKKIARVTKPNLVIFVGDALA-G---- 254 (328)
T ss_dssp HHHHHHHTC--S----------EEEEEECCSCCTTTC------------HHHHHHHHHHHHCCSEEEEEEEGGG-T----
T ss_pred HHHHHhccc--h----------hhHHhhccchhHHHH------------HHHHHHHHHHHhcCCCCEEEEecHH-H----
Confidence 987532100 0 001122222221111 1222334889998888888888555 3
Q ss_pred HHHHHHHHHHHHHh-CCCEEEEEecC
Q 000979 790 AAAIVMRTVRNTVD-TGRTVVCTIHQ 814 (1202)
Q Consensus 790 ~~~~v~~~l~~~~~-~g~tvi~~~H~ 814 (1202)
..+++.++.+.+ .+.|+|++||.
T Consensus 255 --~~~~~~~~~~~~~~~it~iilTKl 278 (328)
T 3e70_C 255 --NAIVEQARQFNEAVKIDGIILTKL 278 (328)
T ss_dssp --THHHHHHHHHHHHSCCCEEEEECG
T ss_pred --HHHHHHHHHHHHhcCCCEEEEeCc
Confidence 345555666653 48999999995
|
| >2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A* | Back alignment and structure |
|---|
Probab=99.10 E-value=2.9e-13 Score=154.83 Aligned_cols=163 Identities=13% Similarity=0.148 Sum_probs=103.4
Q ss_pred eEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCCcc-------cccceEEEeecCCCCC
Q 000979 629 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQE-------TFARISGYCEQNDIHS 701 (1202)
Q Consensus 629 ~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~-------~~~~~~~~v~q~~~~~ 701 (1202)
+.+|+++|+++++|++++|+||||||||||+++|+|...+ ..|+|.+.|.+.... ..++.+++++|++.++
T Consensus 42 ~~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~--~~g~v~i~~~d~~~~~~~~~~~~~~~~i~~v~q~~~~~ 119 (337)
T 2qm8_A 42 RDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTA--AGHKVAVLAVDPSSTRTGGSILGDKTRMARLAIDRNAF 119 (337)
T ss_dssp HHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHH--TTCCEEEEEECGGGGSSCCCSSCCGGGSTTGGGCTTEE
T ss_pred HHHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhhh--CCCEEEEEEEcCcccccccchHHHhhhheeeccCcccc
Confidence 3479999999999999999999999999999999996442 247788877664321 2345679999988776
Q ss_pred CCC------------CHHHHHHHHHH-------------------c--------c-CCCCCCHHHHH---HHHHHHHHHc
Q 000979 702 PFV------------TIYESLLFSAW-------------------L--------R-LSPEVDSETRK---MFIDEVMELV 738 (1202)
Q Consensus 702 ~~l------------Tv~e~l~~~~~-------------------~--------~-~~~~~~~~~~~---~~~~~~l~~l 738 (1202)
+.. +++|.+..... + . .... ..++.+ +.+.+....+
T Consensus 120 ~~~~~~~~~l~G~tr~~~e~~~~~~~~~~~~iliDT~Gi~~~~~~v~~~~d~vl~v~d~~-~~~~~~~i~~~i~~~~~iv 198 (337)
T 2qm8_A 120 IRPSPSSGTLGGVAAKTRETMLLCEAAGFDVILVETVGVGQSETAVADLTDFFLVLMLPG-AGDELQGIKKGIFELADMI 198 (337)
T ss_dssp EECCCCCSSHHHHHHHHHHHHHHHHHTTCCEEEEEECSSSSCHHHHHTTSSEEEEEECSC-C------CCTTHHHHCSEE
T ss_pred cccCcccccccchHHHHHHHHHHHhcCCCCEEEEECCCCCcchhhHHhhCCEEEEEEcCC-CcccHHHHHHHHhccccEE
Confidence 532 23333311100 0 0 0000 000000 0011111111
Q ss_pred CCCccccccccCCCCCCCCHHHHHHHHHHHHHhh------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 000979 739 ELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVA------NPSIIFMDEPTSGLDARAAAIVMRTVRNTVD 803 (1202)
Q Consensus 739 ~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~aL~~------~p~illlDEPtsgLD~~~~~~v~~~l~~~~~ 803 (1202)
.+ +..|.. ....+|+|++|++..+++++. +|++++ ||++|......+++.|.++.+
T Consensus 199 vl-NK~Dl~----~~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~----~Sal~g~gi~~L~~~I~~~~~ 260 (337)
T 2qm8_A 199 AV-NKADDG----DGERRASAAASEYRAALHILTPPSATWTPPVVT----ISGLHGKGLDSLWSRIEDHRS 260 (337)
T ss_dssp EE-ECCSTT----CCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEE----EBTTTTBSHHHHHHHHHHHHH
T ss_pred EE-Echhcc----CchhHHHHHHHHHHHHHHhccccccCCCCCEEE----EeCCCCCCHHHHHHHHHHHHH
Confidence 11 112211 113579999999999999987 688887 999999999999999987643
|
| >1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=99.09 E-value=4.3e-12 Score=141.56 Aligned_cols=128 Identities=14% Similarity=0.078 Sum_probs=84.5
Q ss_pred eCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCCcccccceEEEeecCCCCCCCCCHHHHHHHHHH----
Q 000979 640 RPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESLLFSAW---- 715 (1202)
Q Consensus 640 ~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~---- 715 (1202)
+++.+++|.||||||||||.+.|++..... |. . ++.+.+|+||+.+++. ++++|+.+...
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~~---------g~-----~-~~~~~iv~~D~f~~~~-~~~~~l~~~~~~~~l 92 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLMEK---------YG-----G-EKSIGYASIDDFYLTH-EDQLKLNEQFKNNKL 92 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHH---------HG-----G-GSCEEEEEGGGGBCCH-HHHHHHHHHTTTCGG
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhhhc---------CC-----C-CceEEEeccccccCCh-HHHHHHhccccccch
Confidence 467899999999999999999999865321 10 1 3445677999988764 88889887621
Q ss_pred cc---CCCCCCHHHHHHHHHHHHHHcCCCc----cccccccCCCCCCCCHHHHHHHHHH--HHHhhCCCEEEEeCCCCCC
Q 000979 716 LR---LSPEVDSETRKMFIDEVMELVELNP----LRQSLVGLPGVSGLSTEQRKRLTIA--VELVANPSIIFMDEPTSGL 786 (1202)
Q Consensus 716 ~~---~~~~~~~~~~~~~~~~~l~~l~l~~----~~~~~~~~~~~~~LSgGqrqRv~ia--~aL~~~p~illlDEPtsgL 786 (1202)
+. .+...+. ....+.++.+.... .....+. ...+.+||||+||+++| +++ +|+|||+||||+++
T Consensus 93 ~~~~g~p~a~d~----~~l~~~l~~l~~g~~t~~~~~v~~p-~y~~~~sgGq~~R~~~a~~~~~--~~~IlIlEG~~~~l 165 (290)
T 1odf_A 93 LQGRGLPGTHDM----KLLQEVLNTIFNNNEHPDQDTVVLP-KYDKSQFKGEGDRCPTGQKIKL--PVDIFILEGWFLGF 165 (290)
T ss_dssp GSSSCSTTSBCH----HHHHHHHHHHTC------CCEEEEC-CEETTHHHHTCEECSSCEEEES--SCSEEEEEESSTTC
T ss_pred hhhccCcchhHH----HHHHHHHHHhhccCccccCcceeec-cCccccCCccccccccccceEc--CCCEEEEeCccccC
Confidence 11 1222222 22455566554320 0011111 11246999999999997 555 99999999999999
Q ss_pred CHHH
Q 000979 787 DARA 790 (1202)
Q Consensus 787 D~~~ 790 (1202)
|+..
T Consensus 166 d~~~ 169 (290)
T 1odf_A 166 NPIL 169 (290)
T ss_dssp CCCC
T ss_pred Cccc
Confidence 9863
|
| >3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A* | Back alignment and structure |
|---|
Probab=99.01 E-value=1.5e-10 Score=134.61 Aligned_cols=71 Identities=20% Similarity=0.172 Sum_probs=49.3
Q ss_pred HHHHHHHHHHh--hCCCEEEEeCCCCCCCHHHH------------HHHHHHHHHHHhC-CCEEEEEecCCC---------
Q 000979 761 RKRLTIAVELV--ANPSIIFMDEPTSGLDARAA------------AIVMRTVRNTVDT-GRTVVCTIHQPS--------- 816 (1202)
Q Consensus 761 rqRv~ia~aL~--~~p~illlDEPtsgLD~~~~------------~~v~~~l~~~~~~-g~tvi~~~H~~~--------- 816 (1202)
.+.+.-+.+++ .+|+++++||||+.+|+... ..+++.|++++++ |.|||+++|..+
T Consensus 259 ~~~l~~~~~~l~~~~~~llVIDs~t~~~~~~~sg~g~l~~Rq~~l~~il~~L~~lake~gitVIlv~Hv~~~~~g~~~~~ 338 (400)
T 3lda_A 259 LRLLDAAAQMMSESRFSLIVVDSVMALYRTDFSGRGELSARQMHLAKFMRALQRLADQFGVAVVVTNQVVAQVDGGMAFN 338 (400)
T ss_dssp HHHHHHHHHHHHHSCEEEEEEETGGGGCC------CCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEC-----------
T ss_pred HHHHHHHHHHHHhcCCceEEecchhhhCchhhcCccchHHHHHHHHHHHHHHHHHHHHcCCEEEEEEeecccCCcccccc
Confidence 34444444443 46999999999999997533 5678888888765 999999999821
Q ss_pred ---------HHHHHhcceEEEEec
Q 000979 817 ---------IDIFEAFDELFLMKR 831 (1202)
Q Consensus 817 ---------~~~~~~~d~v~~l~~ 831 (1202)
..+...+|.++.|.+
T Consensus 339 g~~~~p~gg~~l~~~ad~vl~L~~ 362 (400)
T 3lda_A 339 PDPKKPIGGNIMAYSSTTRLGFKK 362 (400)
T ss_dssp ---------CHHHHHCSEEEEEEE
T ss_pred CCCccCCchhHHHHhcceEEEEEe
Confidence 124566899999976
|
| >2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A* | Back alignment and structure |
|---|
Probab=98.99 E-value=1.5e-11 Score=137.22 Aligned_cols=88 Identities=14% Similarity=0.167 Sum_probs=70.1
Q ss_pred HHHHHHHhCCcccccccccCCcccccCccccchhhHHHHHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHhHhCCCEEE
Q 000979 47 TDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAV 126 (1202)
Q Consensus 47 v~~il~~lgL~~~~dT~VG~~~~~gLSGGQKqRvsIAraLv~~P~ILlLDEpTSGLDs~sa~~vv~~L~~~a~~~~tTiI 126 (1202)
++..++.+ |++..| | ..|||||||| ||||+++|+||+ ||+||+.++..+.. +
T Consensus 184 ~~~~i~~~-L~~gld---g----~~LSgGqkQR---ARAll~~p~iLl----Ts~LD~~~~~~i~~----l--------- 235 (305)
T 2v9p_A 184 CWRYFDTY-LRNALD---G----YPVSIDRKHK---AAVQIKAPPLLV----TSNIDVQAEDRYLY----L--------- 235 (305)
T ss_dssp HHHHHHHT-TTGGGG---T----CCEECCCSSC---CCCEECCCCEEE----EESSCSTTCGGGGG----G---------
T ss_pred HHHHHHHH-hHccCC---c----cCcCHHHHHH---HHHHhCCCCEEE----ECCCCHHHHHHHHH----H---------
Confidence 44566664 666666 3 5799999999 999999999999 99999999877641 1
Q ss_pred EEecCCChHHHhhhcceEEecCCcEEEEcCcchHHHHHHhC
Q 000979 127 ISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLEFFASM 167 (1202)
Q Consensus 127 iaihQp~~s~~~~fD~IvvL~~G~vvy~G~~~el~~~F~~l 167 (1202)
.|+.++++.+|+| +|++|++++.|+|+++..+|..+
T Consensus 236 ----tH~~~~~~~aD~i-vl~~G~iv~~g~~~el~~~y~~l 271 (305)
T 2v9p_A 236 ----HSRVQTFRFEQPC-TDESGEQPFNITDADWKSFFVRL 271 (305)
T ss_dssp ----TTTEEEEECCCCC-CCC---CCCCCCHHHHHHHHHHS
T ss_pred ----hCCHHHHHhCCEE-EEeCCEEEEeCCHHHHHHHHHHH
Confidence 3778889999999 99999999999999997777664
|
| >2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=98.98 E-value=1.7e-11 Score=138.04 Aligned_cols=123 Identities=15% Similarity=0.183 Sum_probs=80.5
Q ss_pred EEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEE---cCccCCcc--ccc-ceEEEeecCCCCC-----CCCCH
Q 000979 638 AFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITI---SGYPKKQE--TFA-RISGYCEQNDIHS-----PFVTI 706 (1202)
Q Consensus 638 ~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~---~g~~~~~~--~~~-~~~~~v~q~~~~~-----~~lTv 706 (1202)
.+.+|++++|+||||||||||+|+|+ ... +.+|+|.+ +|.+.... ..+ +.+||++|.+.+. +.+|+
T Consensus 161 ~~l~G~i~~l~G~sG~GKSTLln~l~-~~~--~~~G~i~~~~~~G~~~t~~~~~~~~~~~g~v~d~pg~~~~~l~~~lt~ 237 (302)
T 2yv5_A 161 DYLEGFICILAGPSGVGKSSILSRLT-GEE--LRTQEVSEKTERGRHTTTGVRLIPFGKGSFVGDTPGFSKVEATMFVKP 237 (302)
T ss_dssp HHTTTCEEEEECSTTSSHHHHHHHHH-SCC--CCCSCC---------CCCCEEEEEETTTEEEESSCCCSSCCGGGTSCG
T ss_pred hhccCcEEEEECCCCCCHHHHHHHHH-Hhh--CcccccccccCCCCCceeeEEEEEcCCCcEEEECcCcCcCcccccCCH
Confidence 34579999999999999999999999 765 44789998 88765432 112 2479999998654 67899
Q ss_pred HHHH--HHHH----HccCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCCCCCCCCHHHHHHHHHHHH
Q 000979 707 YESL--LFSA----WLRLSPEVDSETRKMFIDEVMELVELNP-LRQSLVGLPGVSGLSTEQRKRLTIAVE 769 (1202)
Q Consensus 707 ~e~l--~~~~----~~~~~~~~~~~~~~~~~~~~l~~l~l~~-~~~~~~~~~~~~~LSgGqrqRv~ia~a 769 (1202)
|++ .|.. .++........+....++++++.++|.+ ..+... +.|||.++|++.|||+
T Consensus 238 -e~l~~~f~~~~~~~c~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~~~-----~~ls~~~~R~~~~~~~ 301 (302)
T 2yv5_A 238 -REVRNYFREFLRYQCKYPDCTHTNEPGCAVKEAVKNGEISCERYKSYL-----KIIKVYLEEIKELCRE 301 (302)
T ss_dssp -GGGGGGCGGGHHHHHHSTTCCSSSCTTCHHHHHHHTTSSCHHHHHHHH-----HHTTCCCTTHHHHSSC
T ss_pred -HHHHHHHHHHHHccCCCCCCCCCCCCCCHHHHHHHcCCCCHHHHHHHH-----HHHHHHHHHHHHHhcc
Confidence 888 4431 0111110111122345789999999986 555543 4699999999999873
|
| >2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1 | Back alignment and structure |
|---|
Probab=98.98 E-value=1.3e-12 Score=156.95 Aligned_cols=177 Identities=11% Similarity=0.024 Sum_probs=103.3
Q ss_pred eEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCCcccccceEEEeecCCCCC-------
Q 000979 629 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHS------- 701 (1202)
Q Consensus 629 ~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~------- 701 (1202)
..+++++++.+++|+.++|+|||||||||||++|+|..++. .|.|.++|.+.-.......++++.|.....
T Consensus 247 ~~~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~~~--~giitied~~E~~~~~~~~v~~~~r~~~~~~~~~~~~ 324 (511)
T 2oap_1 247 SGVLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIPPD--AKVVSIEDTREIKLYHENWIAEVTRTGMGEGEIDMYD 324 (511)
T ss_dssp HHHHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSCTT--CCEEEEESSCCCCCCCSSEEEEECBCCSSSCCBCHHH
T ss_pred HHHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCCCC--CCEEEEcCcccccCCCCCeEEEEeecccccCCcCHHH
Confidence 34789999999999999999999999999999999977643 688889886521111233455555543321
Q ss_pred ---------------CCCCHHHHHHHHHHccCCCC-CCHHHHHHHHHHHHHHcCCCc---------cccccccCCCCCCC
Q 000979 702 ---------------PFVTIYESLLFSAWLRLSPE-VDSETRKMFIDEVMELVELNP---------LRQSLVGLPGVSGL 756 (1202)
Q Consensus 702 ---------------~~lTv~e~l~~~~~~~~~~~-~~~~~~~~~~~~~l~~l~l~~---------~~~~~~~~~~~~~L 756 (1202)
..++..|++.+......... .+.- ....++++++.+.... ..+..+. ....+
T Consensus 325 ~l~~~LR~~PD~iivgEir~~E~~~~l~a~~tGh~~~sT~-Ha~~~~~~l~Rl~~~~~~v~~~l~~~l~~vi~--~~~~~ 401 (511)
T 2oap_1 325 LLRAALRQRPDYIIVGEVRGREAQTLFQAMSTGHASYSTL-HAGDINQMVYRLESEPLKVPRSMLQFLDIALV--QTMWV 401 (511)
T ss_dssp HHHTTGGGCCSEEEESCCCSTHHHHHHHHHHTTCEEEEEE-ECSSHHHHHHHHHSTTTCCCGGGGGGCCEEEE--EEEEE
T ss_pred HHHHhhccCCCeEEeCCcCHHHHHHHHHhhcCCCCccccc-ccCCHHHHHHHHHhcccccHHHHHhhccEEEE--EEEEE
Confidence 23444444332211110000 0000 0000123333332211 0110000 11247
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEE--EecCCCHHHHHhc
Q 000979 757 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVC--TIHQPSIDIFEAF 823 (1202)
Q Consensus 757 SgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~--~~H~~~~~~~~~~ 823 (1202)
|+|||||.+++. + | |+|||+.....+++.|.++.++|+|+++ ++|+++ ++...+
T Consensus 402 s~G~~~R~~~ai----------~-E-~~GlDp~~~~~~~~~l~~~~~~~~tii~~~~sH~l~-ei~~~~ 457 (511)
T 2oap_1 402 RGNTRLRRTKEV----------N-E-ILGIDPVDKNLLVNQFVKWDPKEDKHIEVSMPKKLE-KMADFL 457 (511)
T ss_dssp SSSCEEEEEEEE----------E-E-EEECCSSSSCCEEEEEEEEETTTTEEEECSCCTHHH-HHHHHH
T ss_pred eCCCceEEEEEE----------E-E-EcCcccCCCeEEEEEeEEEcccCCEEEEcccHHHHH-HHHHHc
Confidence 999999877641 1 7 9999998887777777777666888875 889765 444444
|
| >4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A* | Back alignment and structure |
|---|
Probab=98.97 E-value=1.2e-10 Score=119.82 Aligned_cols=69 Identities=12% Similarity=-0.036 Sum_probs=54.6
Q ss_pred ccCccccchhhHHHHHhcCCeEeeeeCCCccccHH----------------HHHHHHHHHHHHhHhCCCEEEEEecCCCh
Q 000979 71 GISGGQKKRVTTGEMMVGPALALFMDEISTGLDSS----------------TTFQIVNCLRQNIHINSGTAVISLLQPAP 134 (1202)
Q Consensus 71 gLSGGQKqRvsIAraLv~~P~ILlLDEpTSGLDs~----------------sa~~vv~~L~~~a~~~~tTiIiaihQp~~ 134 (1202)
..|||||||++|||++..+|++|+|||||+|||.. ....+.+.++++.++ |+|+|+++| ..
T Consensus 83 ~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~R~~~~~~~~vi~~~~~~l~~~l~~l~~~-g~tvi~vtH--~~ 159 (171)
T 4gp7_A 83 VQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKNRTDRQVEEYVIRKHTQQMKKSIKGLQRE-GFRYVYILN--SP 159 (171)
T ss_dssp CSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHSTTHHHH-TCSEEEEEC--SH
T ss_pred CCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhcccCCCCCHHHHHHHHHHhhhhhhhHHhc-CCcEEEEeC--CH
Confidence 46999999999999999999999999999999999 557888888777655 666665554 44
Q ss_pred HHHhhhcc
Q 000979 135 ETYDLFDD 142 (1202)
Q Consensus 135 s~~~~fD~ 142 (1202)
+....+++
T Consensus 160 ~~~~~~~~ 167 (171)
T 4gp7_A 160 EEVEEVVF 167 (171)
T ss_dssp HHHHHEEE
T ss_pred HHhhhhhh
Confidence 45444443
|
| >1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=98.97 E-value=2.8e-10 Score=135.19 Aligned_cols=75 Identities=17% Similarity=0.304 Sum_probs=65.2
Q ss_pred cccCccccchhhHHHHHh----cCCeEeeeeCCCccccHHHHHHHHHHHHHHhHhCCCEEEEEecCCChHHHhhhcceEE
Q 000979 70 RGISGGQKKRVTTGEMMV----GPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIIL 145 (1202)
Q Consensus 70 ~gLSGGQKqRvsIAraLv----~~P~ILlLDEpTSGLDs~sa~~vv~~L~~~a~~~~tTiIiaihQp~~s~~~~fD~Ivv 145 (1202)
..||||||||++||++|+ ++|++|+|||||++||..+...+.+.+++... .++++|++.|+ ..+...+|++++
T Consensus 332 ~~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~-~~~~~ii~th~--~~~~~~~d~~~~ 408 (430)
T 1w1w_A 332 EYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRN-PDLQFIVISLK--NTMFEKSDALVG 408 (430)
T ss_dssp GGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCB-TTBEEEEECSC--HHHHTTCSEEEE
T ss_pred ccCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHHHHhc-CCCEEEEEECC--HHHHHhCCEEEE
Confidence 359999999999999998 68999999999999999999999999988643 35677777665 578899999999
Q ss_pred ec
Q 000979 146 LS 147 (1202)
Q Consensus 146 L~ 147 (1202)
|.
T Consensus 409 ~~ 410 (430)
T 1w1w_A 409 VY 410 (430)
T ss_dssp EE
T ss_pred EE
Confidence 85
|
| >3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP} | Back alignment and structure |
|---|
Probab=98.94 E-value=3.5e-12 Score=135.98 Aligned_cols=148 Identities=13% Similarity=0.076 Sum_probs=79.6
Q ss_pred EeCCeEEEEEcCCCCCHHHHHHHHhCCCCC-ceEEEEEEEcCccCCcccccceEEEeecCCCCCCCCCHHHHHHHHHHcc
Q 000979 639 FRPGVLTALMGVSGAGKTTLMDVLAGRKTG-GYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESLLFSAWLR 717 (1202)
Q Consensus 639 i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~-~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~ 717 (1202)
.++|++++|+||||||||||+++|+|...+ |+..|.|.++|..... +..+++.......
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~g~~~g~v~~d~~~~~~--------------------~~~~~~~~~~~~~ 78 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQGLPAEVVPMDGFHLDN--------------------RLLEPRGLLPRKG 78 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHHHTTCCEEEEESGGGBCCH--------------------HHHGGGTCGGGTT
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCceEEEecCCCcCCH--------------------HHHHHhcccccCC
Confidence 578999999999999999999999996542 2224555555443221 1111110000000
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHH-HHHhhCCCEEEEeCCCCCCCHHHHHHHHH
Q 000979 718 LSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIA-VELVANPSIIFMDEPTSGLDARAAAIVMR 796 (1202)
Q Consensus 718 ~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia-~aL~~~p~illlDEPtsgLD~~~~~~v~~ 796 (1202)
.+...+... ..+.++.+...+..+....+.+ ..+|+||+||++++ ++++.++.++++|||.. .
T Consensus 79 ~~~~~~~~~----~~~~l~~l~~~~~i~~p~~d~~-~~~~~g~~~~v~~~~~~~i~eg~~~l~de~~~-----------~ 142 (208)
T 3c8u_A 79 APETFDFEG----FQRLCHALKHQERVIYPLFDRA-RDIAIAGAAEVGPECRVAIIEGNYLLFDAPGW-----------R 142 (208)
T ss_dssp SGGGBCHHH----HHHHHHHHHHCSCEEEEEEETT-TTEEEEEEEEECTTCCEEEEEESSTTBCSTTG-----------G
T ss_pred CCchhhHHH----HHHHHHHHhcCCceecccCCcc-ccCCCCCceEEcCCCcEEEECCceeccCCchh-----------H
Confidence 000111111 1222222211111122222222 35899999999998 88888888888888841 1
Q ss_pred HHHHHHhCCCEEEEEecCCCHHHHHhcce
Q 000979 797 TVRNTVDTGRTVVCTIHQPSIDIFEAFDE 825 (1202)
Q Consensus 797 ~l~~~~~~g~tvi~~~H~~~~~~~~~~d~ 825 (1202)
.++ +.--.++++.+..+..+...+.|
T Consensus 143 ~l~---~~~d~~i~vd~~~~~~~~R~~~R 168 (208)
T 3c8u_A 143 DLT---AIWDVSIRLEVPMADLEARLVQR 168 (208)
T ss_dssp GGG---GTCSEEEEECCCHHHHHHHHHHH
T ss_pred HHH---HhcCEEEEEeCCHHHHHHHHHHH
Confidence 111 22236777777755434555555
|
| >1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=98.93 E-value=6.3e-10 Score=128.80 Aligned_cols=163 Identities=14% Similarity=0.000 Sum_probs=83.5
Q ss_pred EEEEcCCCCCHHHHHHHHhC-CCCCceEEEEEEEcCccCCc-ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCC
Q 000979 645 TALMGVSGAGKTTLMDVLAG-RKTGGYITGNITISGYPKKQ-ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEV 722 (1202)
Q Consensus 645 ~al~G~sGaGKSTLl~~l~g-~~~~~~~~G~i~~~g~~~~~-~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~ 722 (1202)
+.|.||||+|||||+++|++ ...+ ..|.+.++|.+... ...+..+++++|.+.+.-..+ + ....
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~~l~~~--~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~----------~~~~ 104 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLESIFGP--GVYRLKIDVRQFVTASNRKLELNVVSSPYHLEITPS--D----------MGNN 104 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHHHHSCT--TCCC------------------CCEECSSEEEECCC----------------C
T ss_pred EEEECCCCCCHHHHHHHHHHHHcCC--CCCeEEecceeecccccccceeeeecccceEEecHh--h----------cCCc
Confidence 89999999999999999999 3332 25777887765432 122455678887654311110 0 0000
Q ss_pred CHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 000979 723 DSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV 802 (1202)
Q Consensus 723 ~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~ 802 (1202)
... .+++.++.+......+... .||| +..+|+++++|||++ ||+.+...+.+.|.+..
T Consensus 105 ~~~----~~~~~i~~~~~~~~~~~~~------~ls~-----------l~~~~~vlilDE~~~-L~~~~~~~L~~~le~~~ 162 (354)
T 1sxj_E 105 DRI----VIQELLKEVAQMEQVDFQD------SKDG-----------LAHRYKCVIINEANS-LTKDAQAALRRTMEKYS 162 (354)
T ss_dssp CHH----HHHHHHHHHTTTTC-----------------------------CCEEEEEECTTS-SCHHHHHHHHHHHHHST
T ss_pred chH----HHHHHHHHHHHhccccccc------cccc-----------cCCCCeEEEEeCccc-cCHHHHHHHHHHHHhhc
Confidence 111 1233333322111111110 3566 788999999999999 99999999999998763
Q ss_pred hCCCEEEEEecCCCHHHHHhcceEEEEecCCEEEEEcCCCccchhHHHHHh
Q 000979 803 DTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLGRHSCHLISYFE 853 (1202)
Q Consensus 803 ~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G~~~~~~~~~~~~f~ 853 (1202)
.+.++|+++|+++.-.-.+.+| ...+.+.++.. +++..+..
T Consensus 163 -~~~~~Il~t~~~~~l~~~l~sR-------~~~~~~~~~~~--~~~~~~l~ 203 (354)
T 1sxj_E 163 -KNIRLIMVCDSMSPIIAPIKSQ-------CLLIRCPAPSD--SEISTILS 203 (354)
T ss_dssp -TTEEEEEEESCSCSSCHHHHTT-------SEEEECCCCCH--HHHHHHHH
T ss_pred -CCCEEEEEeCCHHHHHHHHHhh-------ceEEecCCcCH--HHHHHHHH
Confidence 4789999999986311122222 34556666653 33444443
|
| >1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=98.91 E-value=1e-12 Score=151.69 Aligned_cols=171 Identities=11% Similarity=0.089 Sum_probs=116.8
Q ss_pred EEeCCeEEEEEcCCCCCHHHHHHHHhCCC----------CCceEEEEEEEcCccCCc----ccccce---EEEeecCCCC
Q 000979 638 AFRPGVLTALMGVSGAGKTTLMDVLAGRK----------TGGYITGNITISGYPKKQ----ETFARI---SGYCEQNDIH 700 (1202)
Q Consensus 638 ~i~~Ge~~al~G~sGaGKSTLl~~l~g~~----------~~~~~~G~i~~~g~~~~~----~~~~~~---~~~v~q~~~~ 700 (1202)
.+++|+.++|+|+||||||||+|+|+|.. +-.+..|.+.++|..... ...++. ..++.+.+.+
T Consensus 16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl 95 (392)
T 1ni3_A 16 RPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGL 95 (392)
T ss_dssp SSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGG
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEecccc
Confidence 56789999999999999999999999932 112457999998843211 011222 2467788888
Q ss_pred CCCCCHHHHH--HHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCC--CE
Q 000979 701 SPFVTIYESL--LFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANP--SI 776 (1202)
Q Consensus 701 ~~~lTv~e~l--~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~aL~~~p--~i 776 (1202)
.+..+..|++ .|.+.++. ++.++..++..+ +. .+..++|+. +| ++
T Consensus 96 ~~~~s~~e~L~~~fl~~ir~------------~d~il~Vvd~~~--d~-----~i~~v~~~~------------dP~~di 144 (392)
T 1ni3_A 96 TKGASTGVGLGNAFLSHVRA------------VDAIYQVVRAFD--DA-----EIIHVEGDV------------DPIRDL 144 (392)
T ss_dssp CCCCCSSSSSCHHHHHHHTT------------CSEEEEEEECCC--TT-----CSSCCSSSS------------CHHHHH
T ss_pred ccCCcHHHHHHHHHHHHHHH------------HHHHHHHHhccc--cc-----eeeeecccc------------Ccchhh
Confidence 7777766655 44333321 111111222211 11 122356543 89 99
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHH-HhCCCEEEEEecCCCHHHHHhcceEE-EEecCC-EEEEEcCCCc
Q 000979 777 IFMDEPTSGLDARAAAIVMRTVRNT-VDTGRTVVCTIHQPSIDIFEAFDELF-LMKRGG-QEIYVGPLGR 843 (1202)
Q Consensus 777 lllDEPtsgLD~~~~~~v~~~l~~~-~~~g~tvi~~~H~~~~~~~~~~d~v~-~l~~gG-~~~~~G~~~~ 843 (1202)
+++|||+.++|+......++.+++. .+.|.|++ +|... ++.+.||++. +|. .| +.++.|+..+
T Consensus 145 ~ildeel~~~D~~~~~k~~~~l~~~~~~~g~ti~--sh~~~-~~~~l~~~i~~~L~-~G~~~~~~~~~~~ 210 (392)
T 1ni3_A 145 SIIVDELLIKDAEFVEKHLEGLRKITSRGANTLE--MKAKK-EEQAIIEKVYQYLT-ETKQPIRKGDWSN 210 (392)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCCSSCSSS--HHHHH-HHHHHHHHHHHHHH-TTCSCGGGSCCCH
T ss_pred hhchhhhHHHHHHHHHHHHHHHHHHHHhcCCccc--cccHH-HHHHHHHHHHHHhc-cCCceeecCCCCH
Confidence 9999999999999999999999988 66677764 99875 6788999999 887 47 8888777653
|
| >1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A* | Back alignment and structure |
|---|
Probab=98.90 E-value=1.7e-12 Score=151.66 Aligned_cols=134 Identities=14% Similarity=0.018 Sum_probs=88.8
Q ss_pred eEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCCc-------ccccceEEEee------
Q 000979 629 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ-------ETFARISGYCE------ 695 (1202)
Q Consensus 629 ~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~-------~~~~~~~~~v~------ 695 (1202)
..+|+++ +. ++|++++|+|||||||||||++|+|...+ ..|+|.+.+.++.. ...++.+++.+
T Consensus 156 ~~~L~~l-~~-~~ggii~I~GpnGSGKTTlL~allg~l~~--~~g~I~~~ed~ie~~~~~~~q~~v~~~~g~~f~~~lr~ 231 (418)
T 1p9r_A 156 HDNFRRL-IK-RPHGIILVTGPTGSGKSTTLYAGLQELNS--SERNILTVEDPIEFDIDGIGQTQVNPRVDMTFARGLRA 231 (418)
T ss_dssp HHHHHHH-HT-SSSEEEEEECSTTSCHHHHHHHHHHHHCC--TTSCEEEEESSCCSCCSSSEEEECBGGGTBCHHHHHHH
T ss_pred HHHHHHH-HH-hcCCeEEEECCCCCCHHHHHHHHHhhcCC--CCCEEEEecccchhccCCcceEEEccccCcCHHHHHHH
Confidence 3467887 53 89999999999999999999999996542 25788888776531 11223344544
Q ss_pred ---cCCCC--CCC----CCHHHHHHHHHHccC----CCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHH
Q 000979 696 ---QNDIH--SPF----VTIYESLLFSAWLRL----SPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRK 762 (1202)
Q Consensus 696 ---q~~~~--~~~----lTv~e~l~~~~~~~~----~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrq 762 (1202)
|++.. ++. .|+.+++.++..-.. ....+.. ..+ +.+..+++.+.. . ...|||||+|
T Consensus 232 ~Lrq~pd~i~vgEiRd~et~~~~l~a~~tGhlv~~tlh~~~~~---~~i-~rL~~lgl~~~~--~-----~~~LSgg~~Q 300 (418)
T 1p9r_A 232 ILRQDPDVVMVGEIRDLETAQIAVQASLTGHLVMSTLHTNTAV---GAV-TRLRDMGIEPFL--I-----SSSLLGVLAQ 300 (418)
T ss_dssp HGGGCCSEEEESCCCSHHHHHHHHHHHHTTCEEEEEECCSSSH---HHH-HHHHHHTCCHHH--H-----HHHEEEEEEE
T ss_pred HhccCCCeEEEcCcCCHHHHHHHHHHHHhCCCcccccchhhHH---HHH-HHHHHcCCcHHH--H-----HHHHHHHHHH
Confidence 87654 233 589999887642110 0111111 122 345667876542 2 2469999999
Q ss_pred HHHHHHHHhhCCCEEEE
Q 000979 763 RLTIAVELVANPSIIFM 779 (1202)
Q Consensus 763 Rv~ia~aL~~~p~illl 779 (1202)
| |||+|+.+|++..-
T Consensus 301 R--LaraL~~~p~~~~~ 315 (418)
T 1p9r_A 301 R--LVRTLCPDCKEPYE 315 (418)
T ss_dssp E--EEEEECTTTCEEEE
T ss_pred H--hhhhhcCCCCccCC
Confidence 9 99999999998763
|
| >3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=98.87 E-value=4.7e-10 Score=118.73 Aligned_cols=52 Identities=12% Similarity=-0.109 Sum_probs=44.4
Q ss_pred cccchhhHHHHHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHhHhCCCEEEEEecCCC
Q 000979 75 GQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPA 133 (1202)
Q Consensus 75 GQKqRvsIAraLv~~P~ILlLDEpTSGLDs~sa~~vv~~L~~~a~~~~tTiIiaihQp~ 133 (1202)
|||||++|||||+.+|+||+||||||| +...+++.|+++ ..++||| +.|.+.
T Consensus 108 Gq~qrv~lAraL~~~p~lllLDEPts~----~~~~l~~~l~~l--~~g~tii-vtHd~~ 159 (208)
T 3b85_A 108 VEVAPLAYMRGRTLNDAFVILDEAQNT----TPAQMKMFLTRL--GFGSKMV-VTGDIT 159 (208)
T ss_dssp EEEEEGGGGTTCCBCSEEEEECSGGGC----CHHHHHHHHTTB--CTTCEEE-EEEC--
T ss_pred chHHHHHHHHHHhcCCCEEEEeCCccc----cHHHHHHHHHHh--cCCCEEE-EECCHH
Confidence 999999999999999999999999999 777899999876 3578888 666544
|
| >1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=98.80 E-value=3.3e-13 Score=142.60 Aligned_cols=56 Identities=11% Similarity=0.211 Sum_probs=42.6
Q ss_pred HHH-HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEe
Q 000979 766 IAV-ELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 830 (1202)
Q Consensus 766 ia~-aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~ 830 (1202)
+++ +++.+|++++|||||+++|..+...+.+.|.+..+. +...|.+ ..+|++++++
T Consensus 116 ~~~~~~l~~p~~~ilde~~~~~d~~~e~~i~~~l~~~~~~----~~~a~~~-----~~~D~iivnd 172 (198)
T 1lvg_A 116 CPIYIFVQPPSLDVLEQRLRLRNTETEESLAKRLAAARTD----MESSKEP-----GLFDLVIIND 172 (198)
T ss_dssp CCEEEEEECSCHHHHHHHHHHHTCSCHHHHHHHHHHHHHH----TTGGGST-----TTCSEEEECS
T ss_pred CcEEEEEeCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHH----HHHhhcc-----CCceEEEECC
Confidence 455 678888888999999999999999999999877543 2334621 5689887765
|
| >1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=98.79 E-value=2.9e-10 Score=127.01 Aligned_cols=119 Identities=19% Similarity=0.197 Sum_probs=67.4
Q ss_pred EEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEE---cCccCCcc-cccce-EEEeecCCCCCC----CCCHH
Q 000979 637 GAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITI---SGYPKKQE-TFARI-SGYCEQNDIHSP----FVTIY 707 (1202)
Q Consensus 637 ~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~---~g~~~~~~-~~~~~-~~~v~q~~~~~~----~lTv~ 707 (1202)
+++.+|++++|+||||+|||||+|+|+|... +..|+|.+ +|...... ...+. .+|++|.+.+.+ .+|+
T Consensus 168 ~~~~~G~~~~lvG~sG~GKSTLln~L~g~~~--~~~G~I~~~~~~G~~tt~~~~~~~~~~g~v~dtpg~~~~~l~~lt~- 244 (307)
T 1t9h_A 168 IPHFQDKTTVFAGQSGVGKSSLLNAISPELG--LRTNEISEHLGRGKHTTRHVELIHTSGGLVADTPGFSSLEFTDIEE- 244 (307)
T ss_dssp GGGGTTSEEEEEESHHHHHHHHHHHHCC---------------------CCCCCEEEETTEEEESSCSCSSCCCTTCCH-
T ss_pred HhhcCCCEEEEECCCCCCHHHHHHHhccccc--ccccceeeecCCCcccccHHHHhhcCCEEEecCCCccccccccCCH-
Confidence 5677999999999999999999999999765 45789988 77654321 12222 699999987765 6799
Q ss_pred HHHH--HHH------HccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHH
Q 000979 708 ESLL--FSA------WLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKR 763 (1202)
Q Consensus 708 e~l~--~~~------~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqR 763 (1202)
|++. |.. .++........+....++++++.+++.+.+.... ..++.|++||
T Consensus 245 e~l~~~f~~~~~~~~~C~f~~c~h~~e~~~~v~~aLe~~~L~~~r~~~y-----~~lls~~~~~ 303 (307)
T 1t9h_A 245 EELGYTFPDIREKSSSCKFRGCLHLKEPKCAVKQAVEDGELKQYRYDHY-----VEFMTEIKDR 303 (307)
T ss_dssp HHHGGGSHHHHHHGGGCSSTTCCSSSCSSCHHHHHHHHTSSCHHHHHHH-----HHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhhhccccCCCCccCHHHHHHHHHHhCCChHHHHHHH-----HHHHHHHhhc
Confidence 8883 331 1121110111112334789999999976433221 2477787763
|
| >1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A* | Back alignment and structure |
|---|
Probab=98.76 E-value=5.9e-11 Score=136.12 Aligned_cols=151 Identities=15% Similarity=0.053 Sum_probs=93.2
Q ss_pred eEEeecceEEEeCC-------eEEEEEcCCCCCHHHHHHHHhCCCCC--ceEEEEEEEcCccCCc---ccccceEEEeec
Q 000979 629 LVLLNGVSGAFRPG-------VLTALMGVSGAGKTTLMDVLAGRKTG--GYITGNITISGYPKKQ---ETFARISGYCEQ 696 (1202)
Q Consensus 629 ~~iL~~vs~~i~~G-------e~~al~G~sGaGKSTLl~~l~g~~~~--~~~~G~i~~~g~~~~~---~~~~~~~~~v~q 696 (1202)
..+++++++.+++| +.++|.||||+|||||+++|+|.... .+.+|.+..++.+... ...++.+.++.|
T Consensus 31 ~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~~~l~~~~~~~~~~~v~~iDE 110 (334)
T 1in4_A 31 ENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAAILTSLERGDVLFIDE 110 (334)
T ss_dssp HHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSHHHHHHHHHHCCTTCEEEEET
T ss_pred HHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCHHHHHHHHHHccCCCEEEEcc
Confidence 34688888888876 89999999999999999999985421 1345555544443221 112456899999
Q ss_pred CCCCCCCCCHHHHHHHHHHccCCCC-CCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCC
Q 000979 697 NDIHSPFVTIYESLLFSAWLRLSPE-VDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPS 775 (1202)
Q Consensus 697 ~~~~~~~lTv~e~l~~~~~~~~~~~-~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~ 775 (1202)
.+.+.+ ++.|++..........- .......+.++..++.+++.. .++. ...||+|+|||+.++
T Consensus 111 ~~~l~~--~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~li~-at~~-----~~~Ls~~l~sR~~l~-------- 174 (334)
T 1in4_A 111 IHRLNK--AVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVG-ATTR-----SGLLSSPLRSRFGII-------- 174 (334)
T ss_dssp GGGCCH--HHHHHHHHHHHTSCCCC---------------CCCEEEE-EESC-----GGGSCHHHHTTCSEE--------
T ss_pred hhhcCH--HHHHHHHHHHHhcccceeeccCcccccccccCCCeEEEE-ecCC-----cccCCHHHHHhcCce--------
Confidence 877765 78888754332211000 001111223444445455544 3333 246999999998654
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 000979 776 IIFMDEPTSGLDARAAAIVMRTVRNTVD 803 (1202)
Q Consensus 776 illlDEPtsgLD~~~~~~v~~~l~~~~~ 803 (1202)
.+||+.+...+.+.|++.++
T Consensus 175 --------~~Ld~~~~~~l~~iL~~~~~ 194 (334)
T 1in4_A 175 --------LELDFYTVKELKEIIKRAAS 194 (334)
T ss_dssp --------EECCCCCHHHHHHHHHHHHH
T ss_pred --------eeCCCCCHHHHHHHHHHHHH
Confidence 78888889999999988764
|
| >2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.74 E-value=7.2e-12 Score=139.20 Aligned_cols=128 Identities=16% Similarity=0.156 Sum_probs=84.3
Q ss_pred eEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCCcc---cccceEEEeecCC-CCCCCC
Q 000979 629 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQE---TFARISGYCEQND-IHSPFV 704 (1202)
Q Consensus 629 ~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~---~~~~~~~~v~q~~-~~~~~l 704 (1202)
..+++++++.+++| ++|+||||||||||+++|+|.... +.+.++|.+.... ...+.+++++|.. ...|.+
T Consensus 33 ~~~l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~~~----~~i~i~g~~l~~~~~~~~~~~i~~vf~~a~~~~p~i 106 (274)
T 2x8a_A 33 PDQFKALGLVTPAG--VLLAGPPGCGKTLLAKAVANESGL----NFISVKGPELLNMYVGESERAVRQVFQRAKNSAPCV 106 (274)
T ss_dssp HHHHHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHHTTC----EEEEEETTTTCSSTTHHHHHHHHHHHHHHHHTCSEE
T ss_pred HHHHHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHHcCC----CEEEEEcHHHHhhhhhHHHHHHHHHHHHHHhcCCCe
Confidence 34789999999999 999999999999999999997542 5788998765321 1223456666653 344555
Q ss_pred CHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCC
Q 000979 705 TIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTS 784 (1202)
Q Consensus 705 Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~illlDEPts 784 (1202)
++.|++......+ .... .+ ......+.. ...|||||+||+.|++++..+|++| |||+.
T Consensus 107 ~~~Deid~~~~~r-----~~~~----~~------~~~~~~~~~-----l~~Lsgg~~~~~~i~ia~tn~p~~L--D~al~ 164 (274)
T 2x8a_A 107 IFFDEVDALCPRR-----SDRE----TG------ASVRVVNQL-----LTEMDGLEARQQVFIMAATNRPDII--DPAIL 164 (274)
T ss_dssp EEEETCTTTCC------------------------CTTHHHHH-----HHHHHTCCSTTCEEEEEEESCGGGS--CHHHH
T ss_pred Eeeehhhhhhccc-----CCCc----ch------HHHHHHHHH-----HHhhhcccccCCEEEEeecCChhhC--CHhhc
Confidence 5555554321100 0000 00 011222222 2359999999999999999999986 88753
|
| >2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=98.71 E-value=1.2e-09 Score=119.50 Aligned_cols=60 Identities=13% Similarity=0.175 Sum_probs=44.5
Q ss_pred hCCCEEEEeCCCCCC--CHHHHHHHHHHHHHHH-hCCCEEEEEecCCCHH-------HHHhcceEEEEec
Q 000979 772 ANPSIIFMDEPTSGL--DARAAAIVMRTVRNTV-DTGRTVVCTIHQPSID-------IFEAFDELFLMKR 831 (1202)
Q Consensus 772 ~~p~illlDEPtsgL--D~~~~~~v~~~l~~~~-~~g~tvi~~~H~~~~~-------~~~~~d~v~~l~~ 831 (1202)
.+|+++++|||++.+ |+......+..|.+++ +.|.|||+++|..... +.+.+|.++.|.+
T Consensus 127 ~~~~~vviD~~~~l~~~~~~~~~~~l~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~D~vi~L~~ 196 (247)
T 2dr3_A 127 INAKRVVVDSVTTLYINKPAMARSIILQLKRVLAGTGCTSIFVSQVSVGERGFGGPGVEHGVDGIIRLDL 196 (247)
T ss_dssp HTCCEEEEETSGGGTTTCGGGHHHHHHHHHHHHHHTTCEEEEEEECC----CCC-CCHHHHSSEEEEEEE
T ss_pred hCCCEEEECCchHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEecCCCCcccccccccceeEEEEEEEEE
Confidence 589999999999988 5544555555565554 5689999999986531 4577899999975
|
| >1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A* | Back alignment and structure |
|---|
Probab=98.67 E-value=2.2e-10 Score=129.52 Aligned_cols=97 Identities=15% Similarity=0.127 Sum_probs=71.9
Q ss_pred eEEeeeEEEEecCchhhhcccccCceEEeecceEEE-------------------eCCeEEEEEcCCCCCHHHHHHHHhC
Q 000979 604 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAF-------------------RPGVLTALMGVSGAGKTTLMDVLAG 664 (1202)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i-------------------~~Ge~~al~G~sGaGKSTLl~~l~g 664 (1202)
++++||++.|. ++++++++.+ ++|+++||+||||||||||+++|+|
T Consensus 38 i~~~~v~~~y~---------------~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~g~iigI~G~~GsGKSTl~~~L~~ 102 (308)
T 1sq5_A 38 LSLEEVAEIYL---------------PLSRLLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQA 102 (308)
T ss_dssp CCHHHHHHTHH---------------HHHHHHHHHHHHHHHHHHHHHHHHTCC-CCCCEEEEEEECTTSSHHHHHHHHHH
T ss_pred cchHhHHHHHH---------------HHHHHHHHHHhhhhhHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 56677775551 2578888877 8999999999999999999999999
Q ss_pred CCCCceEEEEEEE---cCccCCcccccceEEEeecCCCCCCCCCHHHHHHHHHHcc
Q 000979 665 RKTGGYITGNITI---SGYPKKQETFARISGYCEQNDIHSPFVTIYESLLFSAWLR 717 (1202)
Q Consensus 665 ~~~~~~~~G~i~~---~g~~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~ 717 (1202)
.....+.+|+|.+ +|..... ..++.++++ |...+++.+|+.+++.+...++
T Consensus 103 ~l~~~~~~G~i~vi~~d~~~~~~-~~~~~~~~v-q~~~~~~~~~~~~~~~~~~~l~ 156 (308)
T 1sq5_A 103 LLSRWPEHRRVELITTDGFLHPN-QVLKERGLM-KKKGFPESYDMHRLVKFVSDLK 156 (308)
T ss_dssp HHTTSTTCCCEEEEEGGGGBCCH-HHHHHHTCT-TCTTSGGGBCHHHHHHHHHHHT
T ss_pred HHhhCCCCCeEEEEecCCccCcH-HHHHhCCEe-ecCCCCCCccHHHHHHHHHHHh
Confidence 5430012578888 8876432 223456788 7777778899999998766543
|
| >1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=98.65 E-value=3.6e-09 Score=119.11 Aligned_cols=102 Identities=15% Similarity=0.215 Sum_probs=65.2
Q ss_pred EEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEE---cCccCCccc--c-cceEEEeecCCC-----------
Q 000979 637 GAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITI---SGYPKKQET--F-ARISGYCEQNDI----------- 699 (1202)
Q Consensus 637 ~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~---~g~~~~~~~--~-~~~~~~v~q~~~----------- 699 (1202)
+++.+|++++|+||||||||||||+|+|... +.+|+|.+ +|.+..... . .+.+|||+|.+.
T Consensus 164 f~~l~geiv~l~G~sG~GKSTll~~l~g~~~--~~~G~i~~~~~~g~~~t~~~~~~~~~~~g~v~q~p~~~~~~~~~~~~ 241 (301)
T 1u0l_A 164 KEYLKGKISTMAGLSGVGKSSLLNAINPGLK--LRVSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGFANLEINDIEP 241 (301)
T ss_dssp HHHHSSSEEEEECSTTSSHHHHHHHHSTTCC--CC-------------CCCSCCEEECTTSCEEESSCSSTTCCCCSSCH
T ss_pred HHHhcCCeEEEECCCCCcHHHHHHHhccccc--ccccceecccCCCCCceeeeEEEEcCCCCEEEECcCCCccCCCcCCH
Confidence 3456799999999999999999999999876 45899999 887654311 1 134799999975
Q ss_pred -----CCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCC-cccccc
Q 000979 700 -----HSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELN-PLRQSL 747 (1202)
Q Consensus 700 -----~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-~~~~~~ 747 (1202)
++|.+|+ ||+.|.. +... .+.+.+++++++.++|. +..+..
T Consensus 242 ~~~~~l~~~~~~-~n~~~~~-~~~~-----~e~~~~v~~~l~~~~L~~~~~~~~ 288 (301)
T 1u0l_A 242 EELKHYFKEFGD-KQCFFSD-CNHV-----DEPECGVKEAVENGEIAESRYENY 288 (301)
T ss_dssp HHHGGGSTTSSS-CCCSSTT-CCSS-----SCSSCHHHHHHHHTSSCHHHHHHH
T ss_pred HHHHHHHHhccc-ccCcCCC-CcCC-----CCCCcHHHHHHHcCCCCHHHHHHH
Confidence 5788899 9888752 1111 11234578999999995 555544
|
| >2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A | Back alignment and structure |
|---|
Probab=98.64 E-value=9.9e-08 Score=113.91 Aligned_cols=177 Identities=14% Similarity=0.144 Sum_probs=105.3
Q ss_pred EeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEE-EEEEcCccCCccccc-ceEEEeecCCCCCCCCCHHH
Q 000979 631 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITG-NITISGYPKKQETFA-RISGYCEQNDIHSPFVTIYE 708 (1202)
Q Consensus 631 iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G-~i~~~g~~~~~~~~~-~~~~~v~q~~~~~~~lTv~e 708 (1202)
.|+++.+-+++|+++.|.|+||+|||||+..+++..... .| .+.+.+......... +..+.... ... +
T Consensus 192 ~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~--~g~~Vl~~s~E~s~~~l~~r~~~~~~~-------~~~-~ 261 (454)
T 2r6a_A 192 ELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATK--TNENVAIFSLEMSAQQLVMRMLCAEGN-------INA-Q 261 (454)
T ss_dssp HHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHH--SSCCEEEEESSSCHHHHHHHHHHHHHT-------CCH-H
T ss_pred HHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHh--CCCcEEEEECCCCHHHHHHHHHHHHcC-------CCH-H
Confidence 488888889999999999999999999999998742210 01 222222211111000 00000000 000 0
Q ss_pred HHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHh--hCCCEEEEeCCCCCC
Q 000979 709 SLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELV--ANPSIIFMDEPTSGL 786 (1202)
Q Consensus 709 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~aL~--~~p~illlDEPtsgL 786 (1202)
. ++. ...+.++ ..++.+.++.++..+..-. . ..++|.+|.+ +.++.++ .+|+++++|+++...
T Consensus 262 ~------l~~-g~l~~~~-~~~~~~a~~~l~~~~l~i~---d--~~~~s~~~i~--~~~~~l~~~~~~~livID~l~~~~ 326 (454)
T 2r6a_A 262 N------LRT-GKLTPED-WGKLTMAMGSLSNAGIYID---D--TPSIRVSDIR--AKCRRLKQESGLGMIVIDYLQLIQ 326 (454)
T ss_dssp H------HHT-SCCCHHH-HHHHHHHHHHHHSSCEEEE---C--CTTCCHHHHH--HHHHHHHTTTCCCEEEEECGGGSC
T ss_pred H------Hhc-CCCCHHH-HHHHHHHHHHHhcCCEEEE---C--CCCCCHHHHH--HHHHHHHHHcCCCEEEEccHHHhc
Confidence 0 111 1223332 2334555555543332211 1 1358999986 5677776 689999999999977
Q ss_pred CH--------HHHHHHHHHHHHHHhC-CCEEEEEec---------C--CCH-------HHHHhcceEEEEecC
Q 000979 787 DA--------RAAAIVMRTVRNTVDT-GRTVVCTIH---------Q--PSI-------DIFEAFDELFLMKRG 832 (1202)
Q Consensus 787 D~--------~~~~~v~~~l~~~~~~-g~tvi~~~H---------~--~~~-------~~~~~~d~v~~l~~g 832 (1202)
++ .....+.+.|++++++ |.+||+++| + |.. .+...+|.+++|.++
T Consensus 327 ~~~~~~~~~~~~i~~i~~~Lk~lAke~~i~vi~~sql~r~~e~~~~~~p~lsdlr~Sg~ie~~aD~vi~l~r~ 399 (454)
T 2r6a_A 327 GSGRSKENRQQEVSEISRSLKALARELEVPVIALSQLSRSVEQRQDKRPMMSDIRESGSIEQDADIVAFLYRD 399 (454)
T ss_dssp CSCC----CHHHHHHHHHHHHHHHHHHTCCEEEEECCCTTSTTC---CCCTHHHHTTCSHHHHCSEEEEEEET
T ss_pred cCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEecCCcccccCCCCCCcHHHhhccchhHhhCCEEEEEecc
Confidence 42 3346777788888755 899999999 2 421 366789999999864
|
| >1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10 | Back alignment and structure |
|---|
Probab=98.63 E-value=8.9e-09 Score=115.37 Aligned_cols=113 Identities=18% Similarity=0.203 Sum_probs=74.3
Q ss_pred cceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCCcccccceEEEeecCCCCCCCCCHHHHHHHH
Q 000979 634 GVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESLLFS 713 (1202)
Q Consensus 634 ~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~ 713 (1202)
.+++..++|++++|+|||||||||+++.|++.... ..|+|.+.+.+.... ...|.
T Consensus 96 ~~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~--~g~kV~lv~~D~~r~-------------------~a~eq---- 150 (306)
T 1vma_A 96 KLNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVD--EGKSVVLAAADTFRA-------------------AAIEQ---- 150 (306)
T ss_dssp CCCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHH--TTCCEEEEEECTTCH-------------------HHHHH----
T ss_pred CCcccCCCCeEEEEEcCCCChHHHHHHHHHHHHHh--cCCEEEEEccccccH-------------------HHHHH----
Confidence 34566789999999999999999999999986431 124455544332100 00111
Q ss_pred HHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHH---HHHHHHhhCCCEEEEeCCCCCCCHHH
Q 000979 714 AWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRL---TIAVELVANPSIIFMDEPTSGLDARA 790 (1202)
Q Consensus 714 ~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv---~ia~aL~~~p~illlDEPtsgLD~~~ 790 (1202)
...+.+..++.. ....|+|+.+++ +|++++..+|+++++|||.. ...
T Consensus 151 -----------------L~~~~~~~gl~~----------~~~~s~~~~~~v~~~al~~a~~~~~dvvIiDtpg~---~~~ 200 (306)
T 1vma_A 151 -----------------LKIWGERVGATV----------ISHSEGADPAAVAFDAVAHALARNKDVVIIDTAGR---LHT 200 (306)
T ss_dssp -----------------HHHHHHHHTCEE----------ECCSTTCCHHHHHHHHHHHHHHTTCSEEEEEECCC---CSC
T ss_pred -----------------HHHHHHHcCCcE----------EecCCccCHHHHHHHHHHHHHhcCCCEEEEECCCc---hhh
Confidence 123334445532 124689999999 99999999999999999974 334
Q ss_pred HHHHHHHHHHH
Q 000979 791 AAIVMRTVRNT 801 (1202)
Q Consensus 791 ~~~v~~~l~~~ 801 (1202)
...+++.|+++
T Consensus 201 ~~~l~~eL~~l 211 (306)
T 1vma_A 201 KKNLMEELRKV 211 (306)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 44555555554
|
| >1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A* | Back alignment and structure |
|---|
Probab=98.57 E-value=7e-08 Score=107.98 Aligned_cols=118 Identities=20% Similarity=0.117 Sum_probs=79.2
Q ss_pred ecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCCcccccceEEEeecCCCCCCCCCHHHHHHH
Q 000979 633 NGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESLLF 712 (1202)
Q Consensus 633 ~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~~ 712 (1202)
++++++ +|++++++|+||+||||++..|++.... ..|++.+.+.+..... ++ +.+
T Consensus 91 ~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~~~--~~~~v~l~~~d~~~~~------------------~~-~ql-- 145 (295)
T 1ls1_A 91 RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKG--KGRRPLLVAADTQRPA------------------AR-EQL-- 145 (295)
T ss_dssp CCCCCC--SSEEEEEECCTTTTHHHHHHHHHHHHHH--TTCCEEEEECCSSCHH------------------HH-HHH--
T ss_pred ceeecC--CCeEEEEECCCCCCHHHHHHHHHHHHHH--cCCeEEEecCCcccHh------------------HH-HHH--
Confidence 678888 9999999999999999999999996431 1356666554432100 00 100
Q ss_pred HHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCC-CCCCCHHHH
Q 000979 713 SAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEP-TSGLDARAA 791 (1202)
Q Consensus 713 ~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~illlDEP-tsgLD~~~~ 791 (1202)
..+.+..++..... + .+-...+.+|.+|+++...+++++++||| ++++|....
T Consensus 146 -------------------~~~~~~~~l~~~~~---~----~~~~p~~l~~~~l~~~~~~~~D~viiDtpp~~~~d~~~~ 199 (295)
T 1ls1_A 146 -------------------RLLGEKVGVPVLEV---M----DGESPESIRRRVEEKARLEARDLILVDTAGRLQIDEPLM 199 (295)
T ss_dssp -------------------HHHHHHHTCCEEEC---C----TTCCHHHHHHHHHHHHHHHTCCEEEEECCCCSSCCHHHH
T ss_pred -------------------HHhcccCCeEEEEc---C----CCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccccHHHH
Confidence 01122334432211 0 11344566789999998899999999999 999999888
Q ss_pred HHHHHHHHHH
Q 000979 792 AIVMRTVRNT 801 (1202)
Q Consensus 792 ~~v~~~l~~~ 801 (1202)
..+.+..+.+
T Consensus 200 ~~l~~~~~~~ 209 (295)
T 1ls1_A 200 GELARLKEVL 209 (295)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHhhhc
Confidence 8887777654
|
| >2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ... | Back alignment and structure |
|---|
Probab=98.54 E-value=1.1e-07 Score=108.92 Aligned_cols=78 Identities=19% Similarity=0.186 Sum_probs=51.7
Q ss_pred HHHHHHHHHhhC--CCEEEEeCCCCCC----------CH---HHHHHHHHHHHHH----HhCCCEEEEEecCCCH-----
Q 000979 762 KRLTIAVELVAN--PSIIFMDEPTSGL----------DA---RAAAIVMRTVRNT----VDTGRTVVCTIHQPSI----- 817 (1202)
Q Consensus 762 qRv~ia~aL~~~--p~illlDEPtsgL----------D~---~~~~~v~~~l~~~----~~~g~tvi~~~H~~~~----- 817 (1202)
+-+.++++++.+ |+++++|||++.+ |+ ..++.+.+.++++ .+.|.|||+++|..+.
T Consensus 126 ~~l~~~~~l~~~~~~~lIVIDsl~~l~~~~e~~~~~gd~~~~~q~r~~~~~l~~L~~~a~~~~~tVI~inh~~~~~~~~~ 205 (349)
T 2zr9_A 126 QALEIADMLVRSGALDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGALNNSGTTAIFINELREKIGVMF 205 (349)
T ss_dssp HHHHHHHHHHTTTCCSEEEEECGGGCCCHHHHTTC----CCCHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC-------
T ss_pred HHHHHHHHHHhcCCCCEEEEcChHhhcchhhhccccccchhhHHHHHHHHHHHHHHHHHHHhCCEEEEEeccccccCccc
Confidence 346678888765 9999999999998 33 2233445555554 3459999999996431
Q ss_pred ----------HHHHhcceEEEEecCCEEEEEcC
Q 000979 818 ----------DIFEAFDELFLMKRGGQEIYVGP 840 (1202)
Q Consensus 818 ----------~~~~~~d~v~~l~~gG~~~~~G~ 840 (1202)
.+...+|.++.+.+ ++++..|+
T Consensus 206 ~~p~~~~gg~~l~~~ad~~l~lrr-~~~~k~g~ 237 (349)
T 2zr9_A 206 GSPETTTGGKALKFYASVRLDVRR-IETLKDGT 237 (349)
T ss_dssp ----CCSSHHHHHHHCSEEEEEEE-EEEECSSS
T ss_pred CCCcccCCchHhhhccceEEEEEE-eeeeecCc
Confidence 14567898888875 45554454
|
| >1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A* | Back alignment and structure |
|---|
Probab=98.54 E-value=9.8e-09 Score=119.35 Aligned_cols=93 Identities=16% Similarity=0.135 Sum_probs=73.4
Q ss_pred HHHHHHHHHhCCcccccccccCCcccccCcc--ccchhhHHHHHhc----------CCeEeeeeCCCccccHHHHHHHHH
Q 000979 45 VITDYYLKVLGLDVCADTMVGDEMIRGISGG--QKKRVTTGEMMVG----------PALALFMDEISTGLDSSTTFQIVN 112 (1202)
Q Consensus 45 ~~v~~il~~lgL~~~~dT~VG~~~~~gLSGG--QKqRvsIAraLv~----------~P~ILlLDEpTSGLDs~sa~~vv~ 112 (1202)
..++++++.++|.+. +..+ . |||| ||||++||++|.+ +|++++|||||+|||+.++.++++
T Consensus 135 ~~~~~~L~~~~L~~~-~~~~-----~-lS~G~~~kqrv~la~aL~~~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~ 207 (413)
T 1tq4_A 135 FPPDTYLEKMKFYEY-DFFI-----I-ISATRFKKNDIDIAKAISMMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQ 207 (413)
T ss_dssp CCHHHHHHHTTGGGC-SEEE-----E-EESSCCCHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHH
T ss_pred HHHHHHHHHcCCCcc-CCeE-----E-eCCCCccHHHHHHHHHHHhcCCCeEEEEecCcccccCcccccCCHHHHHHHHH
Confidence 457889999999875 3332 2 9999 9999999999999 999999999999999999999999
Q ss_pred HHHHHhH----hC----CCEEEEEecCCCh-HHHhhhcceE
Q 000979 113 CLRQNIH----IN----SGTAVISLLQPAP-ETYDLFDDII 144 (1202)
Q Consensus 113 ~L~~~a~----~~----~tTiIiaihQp~~-s~~~~fD~Iv 144 (1202)
.+++... +. .++++++.|.... .+-++.|+|.
T Consensus 208 ~l~~l~~~~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I~ 248 (413)
T 1tq4_A 208 DIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKLI 248 (413)
T ss_dssp HHHHHHHHHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCCcEEEEecCcCCccCHHHHHHHHH
Confidence 9988742 22 3667788776553 3555666663
|
| >2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A* | Back alignment and structure |
|---|
Probab=98.53 E-value=1.3e-09 Score=129.58 Aligned_cols=166 Identities=11% Similarity=0.072 Sum_probs=92.5
Q ss_pred cceEEEeCCeEEEEEcCCCCCHHHHHHHHhC--CCCCceEEEEEEEcCccCCcccccceEEEeecCCCCCC--CCCHHHH
Q 000979 634 GVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSP--FVTIYES 709 (1202)
Q Consensus 634 ~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g--~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~--~lTv~e~ 709 (1202)
.+++.+.++..++|.|++||||||+|+.|.. ..... .+++.+.+.+.+...+.. | ..-+.+.. ...+.+.
T Consensus 159 pv~ldL~~~pHlLIaG~TGSGKSt~L~~li~sLl~~~~--p~~v~l~liDpK~~el~~---~-~~lPhl~~~Vvtd~~~a 232 (512)
T 2ius_A 159 PVVADLAKMPHLLVAGTTGSGASVGVNAMILSMLYKAQ--PEDVRFIMIDPKMLELSV---Y-EGIPHLLTEVVTDMKDA 232 (512)
T ss_dssp EEEEEGGGSCSEEEECCTTSSHHHHHHHHHHHHHTTCC--TTTEEEEEECCSSSGGGG---G-TTCTTBSSSCBCSHHHH
T ss_pred EEEEEcccCceEEEECCCCCCHHHHHHHHHHHHHHhCC--CceEEEEEECCchhhhhh---h-ccCCcccceeecCHHHH
Confidence 3677788899999999999999999999865 12111 133333333332211110 0 00011100 0112221
Q ss_pred HHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHH----------HHHHHHhhCCC-EEE
Q 000979 710 LLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRL----------TIAVELVANPS-IIF 778 (1202)
Q Consensus 710 l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv----------~ia~aL~~~p~-ill 778 (1202)
...-.++ .++.+++ .+.++..|+.+..+..... ...+|+||+||. .+++++...|. +++
T Consensus 233 ~~~L~~~-------~~EmerR-~~ll~~~Gv~~i~~yn~~~--~~~~s~G~~~~~~~~~pg~~~~~~a~~l~~lP~ivlv 302 (512)
T 2ius_A 233 ANALRWC-------VNEMERR-YKLMSALGVRNLAGYNEKI--AEADRMMRPIPDPYWKPGDSMDAQHPVLKKEPYIVVL 302 (512)
T ss_dssp HHHHHHH-------HHHHHHH-HHHHHHTTCSSHHHHHHHH--HHHHHTTCCCBCTTC---------CCBCCCCCEEEEE
T ss_pred HHHHHHH-------HHHHHHH-HHHHHHcCCccHHHHHHHH--HHHhhcCCcccccccccccchhccccccccCCcEEEE
Confidence 1111111 1233333 3677888877654321000 024788887652 35666777898 799
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhC----CCEEEEEecCCC
Q 000979 779 MDEPTSGLDARAAAIVMRTVRNTVDT----GRTVVCTIHQPS 816 (1202)
Q Consensus 779 lDEPtsgLD~~~~~~v~~~l~~~~~~----g~tvi~~~H~~~ 816 (1202)
+||++.-+|.. ...+.+.|.++++. |.++|++||+|+
T Consensus 303 IDE~~~ll~~~-~~~~~~~l~~Lar~gRa~GI~LIlaTQrp~ 343 (512)
T 2ius_A 303 VDEFADLMMTV-GKKVEELIARLAQKARAAGIHLVLATQRPS 343 (512)
T ss_dssp EETHHHHHHHH-HHHHHHHHHHHHHHCGGGTEEEEEEESCCC
T ss_pred EeCHHHHHhhh-hHHHHHHHHHHHHHhhhCCcEEEEEecCCc
Confidence 99999998843 34555666655433 779999999997
|
| >1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B* | Back alignment and structure |
|---|
Probab=98.47 E-value=2.2e-08 Score=104.89 Aligned_cols=37 Identities=19% Similarity=0.275 Sum_probs=33.5
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 000979 762 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN 800 (1202)
Q Consensus 762 qRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~ 800 (1202)
++..+|++|+.+|+++++| ||++|......+++.|.+
T Consensus 152 ~~~~~a~~l~~~~~~~~ld--~Sald~~~v~~l~~~l~~ 188 (191)
T 1oix_A 152 VPTDEARAFAEKNGLSFIE--TSALDSTNVEAAFQTILT 188 (191)
T ss_dssp SCHHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHH
T ss_pred cCHHHHHHHHHHcCCEEEE--EeCCCCCCHHHHHHHHHH
Confidence 4578899999999999999 999999999999988865
|
| >3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A* | Back alignment and structure |
|---|
Probab=98.46 E-value=7.4e-08 Score=122.73 Aligned_cols=91 Identities=12% Similarity=0.123 Sum_probs=73.4
Q ss_pred ccccCccccchhhHHHHH--hcCCeEeeeeCCCccccHHHHHHH-HHHHHHHhHhCCCEEEEEecCCChHHHhhhcceEE
Q 000979 69 IRGISGGQKKRVTTGEMM--VGPALALFMDEISTGLDSSTTFQI-VNCLRQNIHINSGTAVISLLQPAPETYDLFDDIIL 145 (1202)
Q Consensus 69 ~~gLSGGQKqRvsIAraL--v~~P~ILlLDEpTSGLDs~sa~~v-v~~L~~~a~~~~tTiIiaihQp~~s~~~~fD~Ivv 145 (1202)
.+++|+|++++..+|+++ +.+|++++|||||+|||+.....+ +..++.+....+.|+++++|.| +..+++|++..
T Consensus 719 ~~~lStf~~e~~~~a~il~~a~~~sLlLLDEp~~GlD~~~~~~i~~~il~~l~~~~g~~vl~aTH~~--el~~lad~~~~ 796 (934)
T 3thx_A 719 LKGVSTFMAEMLETASILRSATKDSLIIIDELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHFH--ELTALANQIPT 796 (934)
T ss_dssp ----CHHHHHHHHHHHHHHHCCTTCEEEEESCSCSSCHHHHHHHHHHHHHHHHHTTCCEEEEEESCG--GGGGGGGTCTT
T ss_pred HHhHhhhHHHHHHHHHHHHhccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEcCcH--HHHHHhcccce
Confidence 467999999999999888 899999999999999999888888 4555555544588888888874 56689999999
Q ss_pred ecCCcEEEEcCcchHH
Q 000979 146 LSDGQIVYQGPRELVL 161 (1202)
Q Consensus 146 L~~G~vvy~G~~~el~ 161 (1202)
+.+|++.+.|+.+++.
T Consensus 797 v~ng~v~~~~~~~~l~ 812 (934)
T 3thx_A 797 VNNLHVTALTTEETLT 812 (934)
T ss_dssp EEEEEEEEEEETTEEE
T ss_pred eEeeEEEEEecCCcEE
Confidence 9999999999877654
|
| >2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A* | Back alignment and structure |
|---|
Probab=98.43 E-value=1.1e-07 Score=106.33 Aligned_cols=141 Identities=16% Similarity=0.154 Sum_probs=84.0
Q ss_pred eCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCCcccccceEEEeecCCCCCCCCCHHHHHHHHHHccCC
Q 000979 640 RPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLS 719 (1202)
Q Consensus 640 ~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~ 719 (1202)
++|++++++||||+||||+++.|++..... .| +.+.++.+|.. ..+..|.+...+
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~--~G---------------~~V~lv~~D~~---r~~a~eqL~~~~----- 157 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISMLE--KH---------------KKIAFITTDTY---RIAAVEQLKTYA----- 157 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHHHT--TC---------------CCEEEEECCCS---STTHHHHHHHHH-----
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHh--cC---------------CEEEEEecCcc---cchHHHHHHHHH-----
Confidence 479999999999999999999999864310 12 23566666542 235555554322
Q ss_pred CCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHH
Q 000979 720 PEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 799 (1202)
Q Consensus 720 ~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~ 799 (1202)
+..++... ...+. +.-+.+|++ +.+|+++++| |+|+|+.....+.++.+
T Consensus 158 ----------------~~~gl~~~----------~~~~~-~~l~~al~~--~~~~dlvIiD--T~G~~~~~~~~~~el~~ 206 (296)
T 2px0_A 158 ----------------ELLQAPLE----------VCYTK-EEFQQAKEL--FSEYDHVFVD--TAGRNFKDPQYIDELKE 206 (296)
T ss_dssp ----------------TTTTCCCC----------BCSSH-HHHHHHHHH--GGGSSEEEEE--CCCCCTTSHHHHHHHHH
T ss_pred ----------------HhcCCCeE----------ecCCH-HHHHHHHHH--hcCCCEEEEe--CCCCChhhHHHHHHHHH
Confidence 11222110 01122 333555554 5999999999 99999877655555443
Q ss_pred HHH---hCCCEEEE-EecCCCHHHHHhcceEEEEecCCEEEEE
Q 000979 800 NTV---DTGRTVVC-TIHQPSIDIFEAFDELFLMKRGGQEIYV 838 (1202)
Q Consensus 800 ~~~---~~g~tvi~-~~H~~~~~~~~~~d~v~~l~~gG~~~~~ 838 (1202)
-+. ..+.++++ ++|... ++.+.++++..+.. +.++..
T Consensus 207 ~l~~~~~~~~~lVl~at~~~~-~~~~~~~~~~~l~~-~giVlt 247 (296)
T 2px0_A 207 TIPFESSIQSFLVLSATAKYE-DMKHIVKRFSSVPV-NQYIFT 247 (296)
T ss_dssp HSCCCTTEEEEEEEETTBCHH-HHHHHTTTTSSSCC-CEEEEE
T ss_pred HHhhcCCCeEEEEEECCCCHH-HHHHHHHHHhcCCC-CEEEEe
Confidence 332 12334444 377653 56677777665554 456654
|
| >1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=98.43 E-value=1.8e-10 Score=128.56 Aligned_cols=123 Identities=18% Similarity=0.213 Sum_probs=79.1
Q ss_pred EEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCCc---ccccceEEEeecCCC-CCCCCC
Q 000979 630 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ---ETFARISGYCEQNDI-HSPFVT 705 (1202)
Q Consensus 630 ~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~---~~~~~~~~~v~q~~~-~~~~lT 705 (1202)
.+++++++.+++| ++|+||||+|||||+++|++... .|.+.+++.+... ....+.+++++|... ..+.++
T Consensus 63 ~~l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~~----~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~ 136 (278)
T 1iy2_A 63 SRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR----VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIV 136 (278)
T ss_dssp HHHHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHHTT----CCEEEEEHHHHHHSTTTHHHHHHHHHHHHHHTSCSEEE
T ss_pred HHHHHcCCCCCCe--EEEECCCcChHHHHHHHHHHHcC----CCEEEecHHHHHHHHhhHHHHHHHHHHHHHHhcCCcEE
Confidence 4689999999999 99999999999999999999654 4577787765321 111233456666643 456677
Q ss_pred HHHHHHHHHHccCCC-CCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCE
Q 000979 706 IYESLLFSAWLRLSP-EVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSI 776 (1202)
Q Consensus 706 v~e~l~~~~~~~~~~-~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~i 776 (1202)
+.|++......+... ....++.++.+.+++ ..|||||+||+.|++++..+|++
T Consensus 137 ~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll------------------~~lsgg~~~~~~i~~a~t~~p~~ 190 (278)
T 1iy2_A 137 FIDEIDAVGRKRGSGVGGGNDEREQTLNQLL------------------VEMDGFEKDTAIVVMAATNRPDI 190 (278)
T ss_dssp EEETHHHHHCC--------CHHHHHHHHHHH------------------HHHTTCCTTCCEEEEEEESCTTS
T ss_pred ehhhhHhhhcccccccCCcchHHHHHHHHHH------------------HHHhCCCCCCCEEEEEecCCchh
Confidence 777774332111100 001112222222222 24899999999999999999876
|
| >3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=98.42 E-value=1.2e-08 Score=108.15 Aligned_cols=60 Identities=25% Similarity=0.193 Sum_probs=39.5
Q ss_pred eEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCCc---ccccceEEEeecCCCCC
Q 000979 636 SGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ---ETFARISGYCEQNDIHS 701 (1202)
Q Consensus 636 s~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~---~~~~~~~~~v~q~~~~~ 701 (1202)
|+++++|++++|+||||||||||+++|+|..+ .+.+++..... ...++.++|++|++..+
T Consensus 1 s~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 63 (205)
T 3tr0_A 1 SNAMNKANLFIISAPSGAGKTSLVRALVKALA------EIKISISHTTRPKRPGDQEGVDYFFIDETRF 63 (205)
T ss_dssp ----CCCCEEEEECCTTSCHHHHHHHHHHHSS------SEEECCCEECSCCCTTCCBTTTBEECCHHHH
T ss_pred CCcCCCCcEEEEECcCCCCHHHHHHHHHhhCC------CeEEeceeccCCCchhHhcCceEEeccHHHH
Confidence 56788999999999999999999999999743 23444433221 11244567888865443
|
| >2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A | Back alignment and structure |
|---|
Probab=98.41 E-value=8e-08 Score=109.28 Aligned_cols=68 Identities=7% Similarity=0.046 Sum_probs=55.6
Q ss_pred ccccchhhHHHHHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHhHhCCCEEEEEecCCChHHHhhhcceEEecCCcE
Q 000979 74 GGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQI 151 (1202)
Q Consensus 74 GGQKqRvsIAraLv~~P~ILlLDEpTSGLDs~sa~~vv~~L~~~a~~~~tTiIiaihQp~~s~~~~fD~IvvL~~G~v 151 (1202)
||||||++||+||..+|++++|||||+. ++++.++.+. .+++|+++++|.++ +.+.+|+|++|.+|+.
T Consensus 225 gg~~~r~~la~aL~~~p~ilildE~~~~-------e~~~~l~~~~-~g~~tvi~t~H~~~--~~~~~dri~~l~~g~~ 292 (330)
T 2pt7_A 225 GNITSADCLKSCLRMRPDRIILGELRSS-------EAYDFYNVLC-SGHKGTLTTLHAGS--SEEAFIRLANMSSSNS 292 (330)
T ss_dssp TTBCHHHHHHHHTTSCCSEEEECCCCST-------HHHHHHHHHH-TTCCCEEEEEECSS--HHHHHHHHHHHHHTSG
T ss_pred CChhHHHHHHHHhhhCCCEEEEcCCChH-------HHHHHHHHHh-cCCCEEEEEEcccH--HHHHhhhheehhcCCc
Confidence 8999999999999999999999999982 3556666543 45567777777655 8889999999998864
|
| >1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A* | Back alignment and structure |
|---|
Probab=98.40 E-value=2.5e-10 Score=125.68 Aligned_cols=123 Identities=18% Similarity=0.209 Sum_probs=78.1
Q ss_pred EEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCCcc---cccceEEEeecCC-CCCCCCC
Q 000979 630 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQE---TFARISGYCEQND-IHSPFVT 705 (1202)
Q Consensus 630 ~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~---~~~~~~~~v~q~~-~~~~~lT 705 (1202)
.+++++++.+++| ++|+||||+|||||+++|++... .|.+.++|.+.... ...+.+++++|.. ...+.++
T Consensus 39 ~~~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~~----~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~ 112 (254)
T 1ixz_A 39 SRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR----VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIV 112 (254)
T ss_dssp HHHHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHHTT----CCEEEEEHHHHHHSCTTHHHHHHHHHHHHHTTSSSEEE
T ss_pred HHHHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHHhC----CCEEEeeHHHHHHHHhhHHHHHHHHHHHHHHhcCCeEE
Confidence 4689999999999 99999999999999999998654 35677777543211 1123345566653 2455667
Q ss_pred HHHHHHHHHHccCCC-CCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCE
Q 000979 706 IYESLLFSAWLRLSP-EVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSI 776 (1202)
Q Consensus 706 v~e~l~~~~~~~~~~-~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~i 776 (1202)
+.|++......+... ....++.++.+++++ ..|||||+||+.|++++..+|++
T Consensus 113 ~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll------------------~~l~g~~~~~~~i~~a~t~~p~~ 166 (254)
T 1ixz_A 113 FIDEIDAVGRKRGSGVGGGNDEREQTLNQLL------------------VEMDGFEKDTAIVVMAATNRPDI 166 (254)
T ss_dssp EEETHHHHHC---------CHHHHHHHHHHH------------------HHHHTCCTTCCEEEEEEESCGGG
T ss_pred EehhhhhhhcccCccccccchHHHHHHHHHH------------------HHHhCCCCCCCEEEEEccCCchh
Confidence 777774322111100 001122222233332 24889999999999999999986
|
| >3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A* | Back alignment and structure |
|---|
Probab=98.38 E-value=3.1e-08 Score=116.94 Aligned_cols=50 Identities=20% Similarity=0.134 Sum_probs=44.7
Q ss_pred EeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCC
Q 000979 631 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 683 (1202)
Q Consensus 631 iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 683 (1202)
+|+|+|+++++ |+++|+|||||||||||++|+|... +.+|+|.++|.++.
T Consensus 19 ~l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~--p~~G~I~~~g~~~~ 68 (483)
T 3euj_A 19 GFFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALI--PDLTLLNFRNTTEA 68 (483)
T ss_dssp TEEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHHC--CCTTTCCCCCTTSC
T ss_pred cccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCC--CCCCEEEECCEEcc
Confidence 69999999999 9999999999999999999999765 34689999998754
|
| >3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus} | Back alignment and structure |
|---|
Probab=98.38 E-value=5.2e-09 Score=129.56 Aligned_cols=158 Identities=15% Similarity=0.102 Sum_probs=97.3
Q ss_pred CceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCCcccccceEEEeecCCCCCCCCCH
Q 000979 627 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTI 706 (1202)
Q Consensus 627 ~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~lTv 706 (1202)
+...+++++++.+++|+.++|+||||+|||||+++|++..... ..|.+.+++.+... ....++++++.... .+
T Consensus 45 G~~~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~~-~~~~~~~~~~~~~~--~~p~i~~~p~g~~~----~~ 117 (604)
T 3k1j_A 45 GQEHAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPTE-TLEDILVFPNPEDE--NMPRIKTVPACQGR----RI 117 (604)
T ss_dssp SCHHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSCCS-SCEEEEEECCTTCT--TSCEEEEEETTHHH----HH
T ss_pred CchhhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCCcc-cCCeEEEeCCcccc--cCCcEEEEecchHH----HH
Confidence 4456789999999999999999999999999999999975432 23778887766532 34567888774210 01
Q ss_pred HHHHHHHHHccCCCCCCHHHHHHH-------------------------HHHHHHHcCCCccccccccCCCCCCCCHHHH
Q 000979 707 YESLLFSAWLRLSPEVDSETRKMF-------------------------IDEVMELVELNPLRQSLVGLPGVSGLSTEQR 761 (1202)
Q Consensus 707 ~e~l~~~~~~~~~~~~~~~~~~~~-------------------------~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqr 761 (1202)
.|...-.+....... +.+... ....-+.+|..+..... ..++|+|++
T Consensus 118 ~e~~~~~~~~~~~~r---~~~~~~~~~~~~~nl~v~~~~~~~~~~v~~~~~~~~~L~G~~~~~~~~-----~g~~~~g~~ 189 (604)
T 3k1j_A 118 VEKYREKAKSQESVK---SSNMRLKSTVLVPKLLVDNCGRTKAPFIDATGAHAGALLGDVRHDPFQ-----SGGLGTPAH 189 (604)
T ss_dssp HHHHHHHHHHHTCC--------------CCCEEEECCTTCSSCCEEECTTCCHHHHHCEECCCCC---------CCCCGG
T ss_pred HHHHHHhhccchhhh---hhcccccccccccceeeccccCCCCCEEEcCCCCHHhcCceEEechhh-----cCCcccccc
Confidence 111111110000000 000000 00011112211111111 136999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 000979 762 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN 800 (1202)
Q Consensus 762 qRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~ 800 (1202)
|++..++....++.+|||||... |++.....+.+.|.+
T Consensus 190 ~~i~~g~~~~a~~gvL~LDEi~~-l~~~~q~~Ll~~Le~ 227 (604)
T 3k1j_A 190 ERVEPGMIHRAHKGVLFIDEIAT-LSLKMQQSLLTAMQE 227 (604)
T ss_dssp GGEECCHHHHTTTSEEEETTGGG-SCHHHHHHHHHHHHH
T ss_pred ccccCceeeecCCCEEEEechhh-CCHHHHHHHHHHHHc
Confidence 99999999999999999999988 898888888777764
|
| >1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A* | Back alignment and structure |
|---|
Probab=98.21 E-value=8.4e-07 Score=99.68 Aligned_cols=80 Identities=15% Similarity=0.037 Sum_probs=61.7
Q ss_pred ccCccc-cchhhHHHHHhcCCeEeeeeCCCc---c---ccH-HHHHHHHHHHHHHhHhCCCEEEEEecCCC-h-------
Q 000979 71 GISGGQ-KKRVTTGEMMVGPALALFMDEIST---G---LDS-STTFQIVNCLRQNIHINSGTAVISLLQPA-P------- 134 (1202)
Q Consensus 71 gLSGGQ-KqRvsIAraLv~~P~ILlLDEpTS---G---LDs-~sa~~vv~~L~~~a~~~~tTiIiaihQp~-~------- 134 (1202)
.+|.+| +||+. |+++..+|+++++||||+ + +|. .....+++.|++++++.+.|||++.|..+ .
T Consensus 129 ~~~~~~l~~~~~-a~~~~~~p~llilDept~~~~~~~~~d~~~~~~~i~~~L~~la~~~~~~vi~vsh~~r~~~~~~~~~ 207 (296)
T 1cr0_A 129 EAETDRLLAKLA-YMRSGLGCDVIILDHISIVVSASGESDERKMIDNLMTKLKGFAKSTGVVLVVICHLKNPDKGKAHEE 207 (296)
T ss_dssp SCCHHHHHHHHH-HHHHTTCCSEEEEEEEC-----------CHHHHHHHHHHHHHHHHHCCEEEEEEECC----------
T ss_pred CCCHHHHHHHHH-HHHHhcCCCEEEEcCccccCCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEEecCcccccccccc
Confidence 477788 77777 999999999999999999 5 455 56678999999998777899999888763 3
Q ss_pred -------------HHHhhhcceEEecCCcE
Q 000979 135 -------------ETYDLFDDIILLSDGQI 151 (1202)
Q Consensus 135 -------------s~~~~fD~IvvL~~G~v 151 (1202)
++.+.+|+|++|.+|+.
T Consensus 208 ~~~p~l~dl~~s~~i~~~aD~vi~L~~~~~ 237 (296)
T 1cr0_A 208 GRPVSITDLRGSGALRQLSDTIIALERNQQ 237 (296)
T ss_dssp -------CCC---CHHHHCSEEEEEEEC--
T ss_pred CCCCCHHHhcccHHhHhhCcEEEEEecCcc
Confidence 67789999999998875
|
| >2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E* | Back alignment and structure |
|---|
Probab=98.19 E-value=1.9e-06 Score=102.15 Aligned_cols=59 Identities=20% Similarity=0.271 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCC----------CCCCCHHHHHHHHHHHHHHH----hCCCEEEEEecCCC
Q 000979 758 TEQRKRLTIAVELVANPSIIFMDEP----------TSGLDARAAAIVMRTVRNTV----DTGRTVVCTIHQPS 816 (1202)
Q Consensus 758 gGqrqRv~ia~aL~~~p~illlDEP----------tsgLD~~~~~~v~~~l~~~~----~~g~tvi~~~H~~~ 816 (1202)
|++++|-.+++|....|.|||+||+ +.|.|......+.++|..+- ..+..||.+||+|+
T Consensus 93 ~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~ 165 (476)
T 2ce7_A 93 GAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPD 165 (476)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGG
T ss_pred cHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCChh
Confidence 5778888899999999999999999 44777777777777776653 24678999999874
|
| >2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A* | Back alignment and structure |
|---|
Probab=98.14 E-value=1.1e-06 Score=92.48 Aligned_cols=37 Identities=16% Similarity=0.305 Sum_probs=32.2
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 000979 764 LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV 802 (1202)
Q Consensus 764 v~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~ 802 (1202)
...|++|+.+|+++++| ||++|......+.+.|.+..
T Consensus 130 ~~~a~~l~~~~~~~~~d--~Sal~~~~i~~l~~~l~~~~ 166 (199)
T 2f9l_A 130 TDEARAFAEKNNLSFIE--TSALDSTNVEEAFKNILTEI 166 (199)
T ss_dssp HHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCeEEE--EeCCCCCCHHHHHHHHHHHH
Confidence 45689999999999999 99999999999998887643
|
| >3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=98.11 E-value=8.8e-07 Score=100.88 Aligned_cols=34 Identities=24% Similarity=0.414 Sum_probs=29.0
Q ss_pred eecce--EEEeCCeEEEEEcCCCCCHHHHHHHHhCC
Q 000979 632 LNGVS--GAFRPGVLTALMGVSGAGKTTLMDVLAGR 665 (1202)
Q Consensus 632 L~~vs--~~i~~Ge~~al~G~sGaGKSTLl~~l~g~ 665 (1202)
|+.+- +-+++|+++.|.||||||||||+..+++.
T Consensus 49 LD~~Lg~GGi~~G~i~~I~GppGsGKSTLal~la~~ 84 (356)
T 3hr8_A 49 IDIATGVGGYPRGRIVEIFGQESSGKTTLALHAIAE 84 (356)
T ss_dssp HHHHTSSSSEETTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred HHHHhccCCccCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 44443 47999999999999999999999999874
|
| >3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum} | Back alignment and structure |
|---|
Probab=98.11 E-value=7.4e-07 Score=96.20 Aligned_cols=38 Identities=32% Similarity=0.253 Sum_probs=22.9
Q ss_pred EEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHh-CCCC
Q 000979 630 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLA-GRKT 667 (1202)
Q Consensus 630 ~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~-g~~~ 667 (1202)
+..+++|+++++|++++|+||||||||||+++|+ |...
T Consensus 15 ~~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~ 53 (231)
T 3lnc_A 15 QTQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQKN 53 (231)
T ss_dssp -------CCEECCCEEEEECSCC----CHHHHHHC----
T ss_pred cccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCCC
Confidence 4578999999999999999999999999999999 9754
|
| >2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B* | Back alignment and structure |
|---|
Probab=98.07 E-value=3.3e-06 Score=106.84 Aligned_cols=79 Identities=13% Similarity=0.126 Sum_probs=60.1
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCEEEEeCCCC-CCCHHHHHHHHHHHHHHHhCCCEEEEE-ecCCCHHHHHhcceEEEEec
Q 000979 754 SGLSTEQRKRLTIAVELVANPSIIFMDEPTS-GLDARAAAIVMRTVRNTVDTGRTVVCT-IHQPSIDIFEAFDELFLMKR 831 (1202)
Q Consensus 754 ~~LSgGqrqRv~ia~aL~~~p~illlDEPts-gLD~~~~~~v~~~l~~~~~~g~tvi~~-~H~~~~~~~~~~d~v~~l~~ 831 (1202)
.-+|+|+.+|..++..++.+++++++|||.. +||......+++.+.+.....++++++ ||++. .+.+.+++..++.-
T Consensus 189 ~v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~~~~~iIl~SAT~~~~-~l~~~~~~~~vi~v 267 (773)
T 2xau_A 189 KYMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRRPDLKIIIMSATLDAE-KFQRYFNDAPLLAV 267 (773)
T ss_dssp EEEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHCTTCEEEEEESCSCCH-HHHHHTTSCCEEEC
T ss_pred EEECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHHHHHhCCCceEEEEeccccHH-HHHHHhcCCCcccc
Confidence 3489999999999999999999999999996 999887777776666554445778885 88764 56677775444433
Q ss_pred CC
Q 000979 832 GG 833 (1202)
Q Consensus 832 gG 833 (1202)
.|
T Consensus 268 ~g 269 (773)
T 2xau_A 268 PG 269 (773)
T ss_dssp CC
T ss_pred cC
Confidence 34
|
| >2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A | Back alignment and structure |
|---|
Probab=98.04 E-value=5.8e-06 Score=95.11 Aligned_cols=148 Identities=13% Similarity=0.100 Sum_probs=84.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCCC---------ceEEEEEEEcCccCCcccccceEEEeecCCCCCCCCCHHH---HHH
Q 000979 644 LTALMGVSGAGKTTLMDVLAGRKTG---------GYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYE---SLL 711 (1202)
Q Consensus 644 ~~al~G~sGaGKSTLl~~l~g~~~~---------~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~lTv~e---~l~ 711 (1202)
.++|+|++|||||||+|.|+|.... ++..|.+.++|.+.. +....|++.+.+ ...|.. .+.
T Consensus 181 ~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~v~---l~DT~G~i~~lp----~~lve~f~~tl~ 253 (364)
T 2qtf_A 181 SIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKIM---LVDTVGFIRGIP----PQIVDAFFVTLS 253 (364)
T ss_dssp EEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEEEE---EEECCCBCSSCC----GGGHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEEEE---EEeCCCchhcCC----HHHHHHHHHHHH
Confidence 4999999999999999999996431 134688888875431 122234444321 111211 111
Q ss_pred HHH--H--cc-CC-CCCC--HHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHH----HHH-hhCCCEEE
Q 000979 712 FSA--W--LR-LS-PEVD--SETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIA----VEL-VANPSIIF 778 (1202)
Q Consensus 712 ~~~--~--~~-~~-~~~~--~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia----~aL-~~~p~ill 778 (1202)
... . +. .. .... ..+..+.+.++++.+++.+..--.+.+. ...+|+|+++|+.++ +++ ..+|++
T Consensus 254 ~~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~NK-~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~-- 330 (364)
T 2qtf_A 254 EAKYSDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLNK-IDKINGDLYKKLDLVEKLSKELYSPIFDV-- 330 (364)
T ss_dssp GGGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEEC-GGGCCSCHHHHHHHHHHHHHHHCSCEEEE--
T ss_pred HHHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEEC-CCCCCchHHHHHHHHHHHHHHhcCCCCcE--
Confidence 000 0 00 00 1111 1222334567777777654431112221 234788888888887 555 334444
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHh
Q 000979 779 MDEPTSGLDARAAAIVMRTVRNTVD 803 (1202)
Q Consensus 779 lDEPtsgLD~~~~~~v~~~l~~~~~ 803 (1202)
+|+|++|......+.+.|.+...
T Consensus 331 --~~~SA~~g~gi~~L~~~I~~~l~ 353 (364)
T 2qtf_A 331 --IPISALKRTNLELLRDKIYQLAT 353 (364)
T ss_dssp --EECBTTTTBSHHHHHHHHHHHHH
T ss_pred --EEEECCCCcCHHHHHHHHHHHhc
Confidence 89999999999999999887653
|
| >4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP} | Back alignment and structure |
|---|
Probab=98.02 E-value=2.3e-07 Score=97.73 Aligned_cols=56 Identities=23% Similarity=0.166 Sum_probs=37.2
Q ss_pred eEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCCcc--cccceEEEeecC
Q 000979 636 SGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQE--TFARISGYCEQN 697 (1202)
Q Consensus 636 s~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~--~~~~~~~~v~q~ 697 (1202)
....++|++++|+||||||||||+++|++.. |.+.++|.+.... ..+...++++|+
T Consensus 23 ~m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~------g~~~i~~d~~~~~~~~~~~~~g~~~~~ 80 (200)
T 4eun_A 23 MMTGEPTRHVVVMGVSGSGKTTIAHGVADET------GLEFAEADAFHSPENIATMQRGIPLTD 80 (200)
T ss_dssp -----CCCEEEEECCTTSCHHHHHHHHHHHH------CCEEEEGGGGSCHHHHHHHHTTCCCCH
T ss_pred hhcCCCCcEEEEECCCCCCHHHHHHHHHHhh------CCeEEcccccccHHHHHHHhcCCCCCC
Confidence 3566789999999999999999999999864 5677887664321 111234566664
|
| >1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=97.96 E-value=1.5e-07 Score=100.49 Aligned_cols=59 Identities=17% Similarity=0.139 Sum_probs=38.3
Q ss_pred eEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCCc-----------ccccceEEEeecC
Q 000979 636 SGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ-----------ETFARISGYCEQN 697 (1202)
Q Consensus 636 s~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~-----------~~~~~~~~~v~q~ 697 (1202)
++++.+ ++++|+|||||||||||++|+|...+ .+|+|.++|.+... ...+..++|++|+
T Consensus 22 ~~~~~~-~~~~i~GpnGsGKSTll~~i~g~~~~--~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~i~~v~~~ 91 (227)
T 1qhl_A 22 TFDLDE-LVTTLSGGNGAGKSTTMAAFVTALIP--DLTLLHFRNTTEAGATSGSRDKGLHGKLKAGVCYSMLD 91 (227)
T ss_dssp EECHHH-HHHHHHSCCSHHHHHHHHHHHHHHSC--CTTTC------------------CGGGBCSSEEEEEEE
T ss_pred EEEEcC-cEEEEECCCCCCHHHHHHHHhccccc--CCCeEEECCEEcccCCccccccchhhHhhcCcEEEEEe
Confidence 455666 89999999999999999999996552 35778887765411 1134567888874
|
| >1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=97.96 E-value=1.3e-07 Score=101.23 Aligned_cols=83 Identities=12% Similarity=-0.050 Sum_probs=62.0
Q ss_pred HHHHHHHHHhCCcccccccccCCcccccCccccchhhH-----HHHHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHhH
Q 000979 45 VITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTT-----GEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIH 119 (1202)
Q Consensus 45 ~~v~~il~~lgL~~~~dT~VG~~~~~gLSGGQKqRvsI-----AraLv~~P~ILlLDEpTSGLDs~sa~~vv~~L~~~a~ 119 (1202)
..++++++... +..++ ..+|||||||++| +++++++|++++|||||+++|..++..+.+.+++...
T Consensus 105 ~~i~~~l~~~~-----~~il~----~~lsggq~qR~~i~~~~~~~~ll~~~~~~~Lde~~~~~d~~~~~~i~~~l~~~~~ 175 (218)
T 1z6g_A 105 SEYDKAKEQNK-----ICLFE----MNINGVKQLKKSTHIKNALYIFIKPPSTDVLLSRLLTRNTENQEQIQKRMEQLNI 175 (218)
T ss_dssp HHHHHHHHTTC-----EEEEE----ECHHHHHHHTTCSSCCSCEEEEEECSCHHHHHHHHHHTCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCC-----cEEEE----ecHHHHHHHHHHhcCCCcEEEEEeCcCHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 34566666533 22332 5699999999999 8999999999999999999999999999999987542
Q ss_pred hCCCEEEEEecCCChHHHhhhcceEEec
Q 000979 120 INSGTAVISLLQPAPETYDLFDDIILLS 147 (1202)
Q Consensus 120 ~~~tTiIiaihQp~~s~~~~fD~IvvL~ 147 (1202)
. .| ++ | ...||.|++++
T Consensus 176 -~-~~--~~---h----~~~~d~iiv~~ 192 (218)
T 1z6g_A 176 -E-LH--EA---N----LLNFNLSIIND 192 (218)
T ss_dssp -H-HH--HH---T----TSCCSEEEECS
T ss_pred -H-HH--hh---c----ccCCCEEEECC
Confidence 2 22 22 2 36678887765
|
| >3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B* | Back alignment and structure |
|---|
Probab=97.94 E-value=4.9e-06 Score=105.81 Aligned_cols=82 Identities=10% Similarity=0.077 Sum_probs=62.7
Q ss_pred ccccCccccchhhHHHHHhcCCeEeeeeCCCccccHHHHHHHH-HHHHHHhHhCCCEEEEEecCCChHHHhhhcceEE-e
Q 000979 69 IRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIV-NCLRQNIHINSGTAVISLLQPAPETYDLFDDIIL-L 146 (1202)
Q Consensus 69 ~~gLSGGQKqRvsIAraLv~~P~ILlLDEpTSGLDs~sa~~vv-~~L~~~a~~~~tTiIiaihQp~~s~~~~fD~Ivv-L 146 (1202)
...+|+|++|+..|+++ +.+|++++|||||+|||+.....+. ..++.+++..+.|+++++|.+ +..+++|+.-- +
T Consensus 733 ~stfs~em~~~~~il~~-a~~p~LlLLDEP~~GlD~~~~~~i~~~il~~L~~~~g~tvl~vTH~~--el~~l~~~~~~~v 809 (918)
T 3thx_B 733 RSTFMEELTDTAEIIRK-ATSQSLVILDELGRGTSTHDGIAIAYATLEYFIRDVKSLTLFVTHYP--PVCELEKNYSHQV 809 (918)
T ss_dssp -CCHHHHHHHHHHHHHH-CCTTCEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCCEEEEECSCG--GGGGHHHHTTTTE
T ss_pred HHHhhHHHHHHHHHHHh-ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHhcCCeEEEEeCcH--HHHHHHhhcccce
Confidence 35689999999999998 8899999999999999999888887 555555554688999998876 45567776531 3
Q ss_pred cCCcEEE
Q 000979 147 SDGQIVY 153 (1202)
Q Consensus 147 ~~G~vvy 153 (1202)
.++++.+
T Consensus 810 ~n~~~~~ 816 (918)
T 3thx_B 810 GNYHMGF 816 (918)
T ss_dssp EEEEEEE
T ss_pred EEEEEEE
Confidence 4445444
|
| >4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=97.92 E-value=1e-05 Score=91.44 Aligned_cols=127 Identities=13% Similarity=0.163 Sum_probs=81.2
Q ss_pred eecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCCcccccceEEEeecCCCCCCCCCHHHHHH
Q 000979 632 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESLL 711 (1202)
Q Consensus 632 L~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~ 711 (1202)
|+.+..-+++|+++.|.|++|+|||||+.-++..... .| ..+.|+.-+ ++..+-.
T Consensus 36 LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a~---------~g---------~~Vl~fSlE------ms~~ql~- 90 (338)
T 4a1f_A 36 LDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSALN---------DD---------RGVAVFSLE------MSAEQLA- 90 (338)
T ss_dssp HHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHHH---------TT---------CEEEEEESS------SCHHHHH-
T ss_pred HHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH---------cC---------CeEEEEeCC------CCHHHHH-
Confidence 7777778999999999999999999999888753210 11 123444321 2322211
Q ss_pred HHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHH
Q 000979 712 FSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA 791 (1202)
Q Consensus 712 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~ 791 (1202)
.++......+++.+..+ ..||.+|++|++.|...+.++++.+.|+|...+
T Consensus 91 -----------------~Rlls~~~~v~~~~l~~--------g~Ls~~e~~~l~~a~~~l~~~~l~I~d~~~~si----- 140 (338)
T 4a1f_A 91 -----------------LRALSDLTSINMHDLES--------GRLDDDQWENLAKCFDHLSQKKLFFYDKSYVRI----- 140 (338)
T ss_dssp -----------------HHHHHHHHCCCHHHHHH--------TCCCHHHHHHHHHHHHHHHHSCEEEECCTTCCH-----
T ss_pred -----------------HHHHHHhhCCCHHHHhc--------CCCCHHHHHHHHHHHHHHhcCCeEEeCCCCCcH-----
Confidence 11111112222222211 149999999999999999999999999986543
Q ss_pred HHHHHHHHHHHhC--CCEEEEEec
Q 000979 792 AIVMRTVRNTVDT--GRTVVCTIH 813 (1202)
Q Consensus 792 ~~v~~~l~~~~~~--g~tvi~~~H 813 (1202)
..+...++++.++ |..+|++-|
T Consensus 141 ~~i~~~ir~l~~~~gg~~lIVIDy 164 (338)
T 4a1f_A 141 EQIRLQLRKLKSQHKELGIAFIDY 164 (338)
T ss_dssp HHHHHHHHHHHHHCTTEEEEEEEE
T ss_pred HHHHHHHHHHHHhcCCCCEEEEec
Confidence 3566666666543 567777755
|
| >2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B* | Back alignment and structure |
|---|
Probab=97.92 E-value=4.7e-06 Score=107.73 Aligned_cols=87 Identities=9% Similarity=0.003 Sum_probs=63.1
Q ss_pred cccCccccchhhHHHHHhcCCeEeeeeCCCccccHHHH-HHHHHHHHHHhHhCCCEEEEEecCCChHHHhhhcceEEecC
Q 000979 70 RGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTT-FQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSD 148 (1202)
Q Consensus 70 ~gLSGGQKqRvsIAraLv~~P~ILlLDEpTSGLDs~sa-~~vv~~L~~~a~~~~tTiIiaihQp~~s~~~~fD~IvvL~~ 148 (1202)
..+|+|++ ++++|++++++|++++|||||+|+|+... ..+++.++.++...+.|+++++|.|. .+...+|++.|+ +
T Consensus 850 stf~~em~-~~a~al~la~~~sLlLLDEp~~Gtd~~dg~~~~~~il~~L~~~~g~~vl~~TH~~e-l~~~~~d~~~v~-~ 926 (1022)
T 2o8b_B 850 STFFVELS-ETASILMHATAHSLVLVDELGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYHS-LVEDYSQNVAVR-L 926 (1022)
T ss_dssp CHHHHHHH-HHHHHHHHCCTTCEEEEECTTTTSCHHHHHHHHHHHHHHHHHTSCCEEEEECCCHH-HHHHTSSCSSEE-E
T ss_pred hhhHHHHH-HHHHHHHhCCCCcEEEEECCCCCCChHHHHHHHHHHHHHHHhcCCCEEEEEeCCHH-HHHHhCCcceee-c
Confidence 34666655 59999999999999999999999999874 44677777776544788888888664 455678999887 5
Q ss_pred CcEE--EEcCcch
Q 000979 149 GQIV--YQGPREL 159 (1202)
Q Consensus 149 G~vv--y~G~~~e 159 (1202)
|++. +.|+.++
T Consensus 927 g~~~~~~~~~~~~ 939 (1022)
T 2o8b_B 927 GHMACMVENECED 939 (1022)
T ss_dssp EEEEEC-------
T ss_pred CeEEEEEecCccc
Confidence 8888 6676544
|
| >1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A | Back alignment and structure |
|---|
Probab=97.90 E-value=7e-06 Score=91.24 Aligned_cols=80 Identities=5% Similarity=-0.055 Sum_probs=62.6
Q ss_pred HHHHHHHHhCCcccccccccCCcccccCccccchhhHHHHHhcCCeEeeeeCCCc--cccHHHH---HHHHHHHHHHhHh
Q 000979 46 ITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEIST--GLDSSTT---FQIVNCLRQNIHI 120 (1202)
Q Consensus 46 ~v~~il~~lgL~~~~dT~VG~~~~~gLSGGQKqRvsIAraLv~~P~ILlLDEpTS--GLDs~sa---~~vv~~L~~~a~~ 120 (1202)
.++.+++.+++.+..+..+ ..+|+||++|+ ++++.+|+++++||||+ ++|..+. .++++.|++++++
T Consensus 98 ~~~~~~~~l~l~~~~~~~~-----~~ls~g~~~~i---~~l~~~~~livlDe~~~~~~~d~~~~~~~~~~~~~L~~l~~~ 169 (279)
T 1nlf_A 98 ERQAVADGLLIQPLIGSLP-----NIMAPEWFDGL---KRAAEGRRLMVLDTLRRFHIEEENASGPMAQVIGRMEAIAAD 169 (279)
T ss_dssp HHHHHHHHEEECCCTTSCC-----CTTSHHHHHHH---HHHHTTCSEEEEECGGGGCCSCTTCHHHHHHHHHHHHHHHHH
T ss_pred hhhhccCceEEeecCCCCc-----ccCCHHHHHHH---HHhcCCCCEEEECCHHHhcCCCcCchHHHHHHHHHHHHHHHH
Confidence 3566788888887665443 46999997765 68889999999999999 9997443 7888999998876
Q ss_pred CCCEEEEEecCCC
Q 000979 121 NSGTAVISLLQPA 133 (1202)
Q Consensus 121 ~~tTiIiaihQp~ 133 (1202)
.++|||++.|...
T Consensus 170 ~g~tvi~i~H~~~ 182 (279)
T 1nlf_A 170 TGCSIVFLHHASK 182 (279)
T ss_dssp HCCEEEEEEEC--
T ss_pred cCCEEEEEecCCC
Confidence 7888888877654
|
| >3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.89 E-value=9e-07 Score=96.14 Aligned_cols=52 Identities=25% Similarity=0.371 Sum_probs=35.1
Q ss_pred eeEEeee-EEEEecCchhhhcccccCceEEeecceEEEeC---CeEEEEEcCCCCCHHHHHHHHhCCC
Q 000979 603 SLTFDEV-VYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRP---GVLTALMGVSGAGKTTLMDVLAGRK 666 (1202)
Q Consensus 603 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~---Ge~~al~G~sGaGKSTLl~~l~g~~ 666 (1202)
.++++|+ +++|. +...+|+|+|+++++ |+.++|+|++||||||+.++|++..
T Consensus 17 ~l~~~~~~~~~~~------------~~~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 17 LLETGSLLHSPFD------------EEQQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp ---------------------------CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred ceEEcceeeEEec------------CcchhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 4788898 88772 123579999999999 9999999999999999999999753
|
| >2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2} | Back alignment and structure |
|---|
Probab=97.87 E-value=7.1e-06 Score=88.20 Aligned_cols=79 Identities=11% Similarity=-0.027 Sum_probs=64.4
Q ss_pred ccCccccchhhHHHHHhcCCe--EeeeeCCCccc--cHHHHHHHHHHHHHHhHhCCCEEEEEecCCC-------hHHHhh
Q 000979 71 GISGGQKKRVTTGEMMVGPAL--ALFMDEISTGL--DSSTTFQIVNCLRQNIHINSGTAVISLLQPA-------PETYDL 139 (1202)
Q Consensus 71 gLSGGQKqRvsIAraLv~~P~--ILlLDEpTSGL--Ds~sa~~vv~~L~~~a~~~~tTiIiaihQp~-------~s~~~~ 139 (1202)
..|++|+++...+.+...+|+ ++++||||+++ |.....++++.|++++++.+.||+++.|..+ ..+.+.
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~d~~~~~~~~~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~ 182 (235)
T 2w0m_A 103 NLTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLDKPAMARKISYYLKRVLNKWNFTIYATSQYAITTSQAFGFGVEHV 182 (235)
T ss_dssp SCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSSCGGGHHHHHHHHHHHHHHTTEEEEEEEC-----------CHHHH
T ss_pred CCCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcCCHHHHHHHHHHHHHHHHhCCCeEEEEeccCcccccccccchhee
Confidence 348899888877777777999 99999999988 9988889999999988777889988888764 457888
Q ss_pred hcceEEecCC
Q 000979 140 FDDIILLSDG 149 (1202)
Q Consensus 140 fD~IvvL~~G 149 (1202)
+|+|++|.+.
T Consensus 183 ~d~vi~l~~~ 192 (235)
T 2w0m_A 183 ADGIIRFRRM 192 (235)
T ss_dssp CSEEEEEEEE
T ss_pred eeEEEEEEEE
Confidence 9999999754
|
| >3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.87 E-value=3.1e-06 Score=93.30 Aligned_cols=60 Identities=10% Similarity=0.162 Sum_probs=45.1
Q ss_pred cccccccccCCcccccCccccchhhHHHHHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHhHhCCCEEEEEec
Q 000979 57 DVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLL 130 (1202)
Q Consensus 57 ~~~~dT~VG~~~~~gLSGGQKqRvsIAraLv~~P~ILlLDEpTSGLDs~sa~~vv~~L~~~a~~~~tTiIiaih 130 (1202)
.+..+... ..||||||||++|||+++. +++|||||+|||+.. .++++.|+ . . .++|+.+|
T Consensus 89 ~~~~~~~~-----~~LS~G~~qrv~iaRal~~---lllldep~~gL~~lD-~~~l~~L~---~-~-~~vI~Vi~ 148 (270)
T 3sop_A 89 EQYEKFLK-----EEVNIARKKRIPDTRVHCC---LYFISPTGHSLRPLD-LEFMKHLS---K-V-VNIIPVIA 148 (270)
T ss_dssp HHHHHHHH-----HHSCTTCCSSCCCCSCCEE---EEEECCCSSSCCHHH-HHHHHHHH---T-T-SEEEEEET
T ss_pred HHHHhhhH-----HhcCcccchhhhhheeeee---eEEEecCCCcCCHHH-HHHHHHHH---h-c-CcEEEEEe
Confidence 45555555 3799999999999999875 999999999999965 34444443 2 3 67777655
|
| >2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=97.86 E-value=2e-05 Score=90.72 Aligned_cols=61 Identities=13% Similarity=0.194 Sum_probs=47.9
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCEEEEe-CCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEe--cCCC
Q 000979 754 SGLSTEQRKRLTIAVELVANPSIIFMD-EPTSGLDARAAAIVMRTVRNTVDTGRTVVCTI--HQPS 816 (1202)
Q Consensus 754 ~~LSgGqrqRv~ia~aL~~~p~illlD-EPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~--H~~~ 816 (1202)
..+|+||+|++. +.+...++-++++| +|++++|......+.+.+++... +..+|++. ||..
T Consensus 230 ~~~~~~~~~~~~-~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~-~~piilV~NK~Dl~ 293 (357)
T 2e87_A 230 SERNEIEKQAIL-ALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFK-DLPFLVVINKIDVA 293 (357)
T ss_dssp TTSCHHHHHHHH-GGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTT-TSCEEEEECCTTTC
T ss_pred hhhhHHHHHHHH-HHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcC-CCCEEEEEECcccC
Confidence 358999998876 55555677789999 99999999988888887776543 77888888 7754
|
| >2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=97.85 E-value=1.5e-06 Score=90.36 Aligned_cols=86 Identities=13% Similarity=0.147 Sum_probs=60.2
Q ss_pred ccccCCcccccCccccchh-hHHH---HHhcCCeEeeeeC--CCccccHHHHHHHHHHHHHHhHhCCCEEEE---EecCC
Q 000979 62 TMVGDEMIRGISGGQKKRV-TTGE---MMVGPALALFMDE--ISTGLDSSTTFQIVNCLRQNIHINSGTAVI---SLLQP 132 (1202)
Q Consensus 62 T~VG~~~~~gLSGGQKqRv-sIAr---aLv~~P~ILlLDE--pTSGLDs~sa~~vv~~L~~~a~~~~tTiIi---aihQp 132 (1202)
..|| +.+..+|||||+++ ++++ |+..+|+||+||| ||..+|... ++.++++.. ...++|+ ++.|.
T Consensus 75 ~~v~-~~~~~ls~~er~~~~~l~~~a~A~~~~~dvlilDE~g~~~~~~~~~----~~~l~~~l~-~~~~~ilgti~vsh~ 148 (189)
T 2i3b_A 75 CRVG-QYVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQLF----IQAVRQTLS-TPGTIILGTIPVPKG 148 (189)
T ss_dssp EESS-SSEECHHHHHTTTTTTTCCCCCCCSSCCCCEEECCCSTTTTTCSHH----HHHHHHHHH-CSSCCEEEECCCCCS
T ss_pred cccc-eEEEcchHHHHHHHHHHhhhhHhhccCCCEEEEeCCCccccccHHH----HHHHHHHHh-CCCcEEEEEeecCCC
Confidence 3666 45667999999998 4555 6899999999999 788888854 455555443 3344443 33233
Q ss_pred ChHHHhhhcceEEecCCcEEEEc
Q 000979 133 APETYDLFDDIILLSDGQIVYQG 155 (1202)
Q Consensus 133 ~~s~~~~fD~IvvL~~G~vvy~G 155 (1202)
+ + ....|+|..+.+|++++-.
T Consensus 149 ~-~-~~~vd~i~~~~~~~i~~~~ 169 (189)
T 2i3b_A 149 K-P-LALVEEIRNRKDVKVFNVT 169 (189)
T ss_dssp S-C-CTTHHHHHTTCCSEEEECC
T ss_pred C-c-hHHHHHHeecCCcEEEEeC
Confidence 3 2 4577999999999998864
|
| >2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A* | Back alignment and structure |
|---|
Probab=97.83 E-value=2.3e-05 Score=83.35 Aligned_cols=79 Identities=10% Similarity=-0.027 Sum_probs=61.2
Q ss_pred ccCccc--cchhhHHHHHhcC-CeEeeeeCCCccccHHH--------HHHHHHHHHHHhHhCCCEEEEEecCCCh-----
Q 000979 71 GISGGQ--KKRVTTGEMMVGP-ALALFMDEISTGLDSST--------TFQIVNCLRQNIHINSGTAVISLLQPAP----- 134 (1202)
Q Consensus 71 gLSGGQ--KqRvsIAraLv~~-P~ILlLDEpTSGLDs~s--------a~~vv~~L~~~a~~~~tTiIiaihQp~~----- 134 (1202)
..|+++ +++++.+++++.+ |+++++||||++||... -.++++.|++++++.+.|++++.|..+.
T Consensus 84 ~~~~~~~~~~~~~~~~~l~~~~~~lliiD~~~~~l~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~vi~~~h~~~~~~~~~ 163 (220)
T 2cvh_A 84 TPSDFKEQRRVIGSLKKTVDSNFALVVVDSITAHYRAEENRSGLIAELSRQLQVLLWIARKHNIPVIVINQVHFDSRTEM 163 (220)
T ss_dssp CCTTTSHHHHHHHHHHHHCCTTEEEEEEECCCCCTTGGGGSSTTHHHHHHHHHHHHHHHHHHTCCEEEEECSSSSCTTSS
T ss_pred ecCCHHHHHHHHHHHHHHhhcCCCEEEEcCcHHHhhhcCchHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeEEEcCCCCc
Confidence 356665 5678888999986 99999999999999733 2456777888887778888887776542
Q ss_pred -------HHHhhhcceEEecCC
Q 000979 135 -------ETYDLFDDIILLSDG 149 (1202)
Q Consensus 135 -------s~~~~fD~IvvL~~G 149 (1202)
.+...+|++++|.+.
T Consensus 164 ~~p~~~~~~~~~~d~vi~l~~~ 185 (220)
T 2cvh_A 164 TKPVAEQTLGYRCKDILRLDKL 185 (220)
T ss_dssp CCSCCCHHHHHTSSEEEEEEEC
T ss_pred cccCCCcceeecCcEEEEEEEe
Confidence 567889999999754
|
| >3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.81 E-value=9.9e-06 Score=90.64 Aligned_cols=87 Identities=15% Similarity=0.122 Sum_probs=60.0
Q ss_pred HHHHhCCcccccccccCCcccccCccccchhhHHHHHhcCCe--EeeeeCCCccccHHHHHHHHHHHHHHhHhCCCEEEE
Q 000979 50 YLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPAL--ALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVI 127 (1202)
Q Consensus 50 il~~lgL~~~~dT~VG~~~~~gLSGGQKqRvsIAraLv~~P~--ILlLDEpTSGLDs~sa~~vv~~L~~~a~~~~tTiIi 127 (1202)
+++.+|+.+..+..++ .|| |||++|||+|+.+|+ +|+|| ||+|||+.+.. ++.....+.|+++
T Consensus 188 lldt~gl~~~~~~~~~-----eLS---kqr~~iaral~~~P~e~lLvLD-ptsglD~~~~~------~~~~~~~g~t~ii 252 (302)
T 3b9q_A 188 LCDTSGRLHTNYSLME-----ELI---ACKKAVGKIVSGAPNEILLVLD-GNTGLNMLPQA------REFNEVVGITGLI 252 (302)
T ss_dssp EECCCCCSSCCHHHHH-----HHH---HHHHHHHTTSTTCCSEEEEEEE-GGGGGGGHHHH------HHHHHHTCCCEEE
T ss_pred HHhcCCCCcchhHHHH-----HHH---HHHHHHHHhhccCCCeeEEEEe-CCCCcCHHHHH------HHHHHhcCCCEEE
Confidence 4556677766666653 699 999999999999999 99999 99999997542 3333334667777
Q ss_pred EecCCC-------hHHH-hhhcceEEecCCcE
Q 000979 128 SLLQPA-------PETY-DLFDDIILLSDGQI 151 (1202)
Q Consensus 128 aihQp~-------~s~~-~~fD~IvvL~~G~v 151 (1202)
.+|-.. .++. +..+.|..+..|+.
T Consensus 253 iThlD~~~~~g~~l~~~~~~~~pi~~i~~Ge~ 284 (302)
T 3b9q_A 253 LTKLDGSARGGCVVSVVEELGIPVKFIGVGEA 284 (302)
T ss_dssp EECCSSCSCTHHHHHHHHHHCCCEEEEECSSS
T ss_pred EeCCCCCCccChheehHHHHCCCEEEEeCCCC
Confidence 666221 1222 33456777777765
|
| >1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A | Back alignment and structure |
|---|
Probab=97.81 E-value=5.7e-07 Score=95.30 Aligned_cols=80 Identities=8% Similarity=0.018 Sum_probs=62.1
Q ss_pred HHHhCCcccccccccCCcccccCccccchhhHHHHHhcCCeEeeeeCCCccc----cHHHHHHHHHHHHHHhHhCCCEEE
Q 000979 51 LKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGL----DSSTTFQIVNCLRQNIHINSGTAV 126 (1202)
Q Consensus 51 l~~lgL~~~~dT~VG~~~~~gLSGGQKqRvsIAraLv~~P~ILlLDEpTSGL----Ds~sa~~vv~~L~~~a~~~~tTiI 126 (1202)
++..||.+.++...+ .|| +|+.+|++++|||||+|| |.....++.+.++++..+.+.|++
T Consensus 119 l~~~gl~~~~~~~~~-----~lS-----------~l~~~p~~~~LDep~~~l~~~~d~~~~~~l~~~l~~l~~~~g~tvi 182 (207)
T 1znw_A 119 VDLAGARAIKKTMPE-----AVT-----------VFLAPPSWQDLQARLIGRGTETADVIQRRLDTARIELAAQGDFDKV 182 (207)
T ss_dssp CCHHHHHHHHHHCTT-----SEE-----------EEEECSCHHHHHHHHHTTSCSCHHHHHHHHHHHHHHHHGGGGSSEE
T ss_pred eCHHHHHHHHHhcCC-----cEE-----------EEEECCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhccCcEE
Confidence 555666666665543 466 899999999999999998 777888999999888655677888
Q ss_pred EEecCCChHHHhhhcceEEec
Q 000979 127 ISLLQPAPETYDLFDDIILLS 147 (1202)
Q Consensus 127 iaihQp~~s~~~~fD~IvvL~ 147 (1202)
++.| ...++.+.+|+|++|.
T Consensus 183 ~vtH-dl~~~~~~~d~i~~l~ 202 (207)
T 1znw_A 183 VVNR-RLESACAELVSLLVGT 202 (207)
T ss_dssp EECS-SHHHHHHHHHHHHC--
T ss_pred EECC-CHHHHHHHHHHHHHhc
Confidence 7765 4568889999999985
|
| >3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A* | Back alignment and structure |
|---|
Probab=97.79 E-value=2.6e-06 Score=95.87 Aligned_cols=55 Identities=7% Similarity=-0.045 Sum_probs=47.1
Q ss_pred hHHHHHHHHHhCCcccccccccCCcccccCccccchhhHHHHHhcCCeEeeeeCCCccccH
Q 000979 44 NVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDS 104 (1202)
Q Consensus 44 ~~~v~~il~~lgL~~~~dT~VG~~~~~gLSGGQKqRvsIAraLv~~P~ILlLDEpTSGLDs 104 (1202)
.+.++++|+.++ .+..++.+ ..+|||||||+++|++++.+|+||+||||++.+|.
T Consensus 155 ~~~~~~~L~~l~-~~~~~~~~-----~~lS~G~~qRv~~a~al~~~p~ilIlDep~~~~d~ 209 (312)
T 3aez_A 155 RRALMRFVTSVK-SGSDYACA-----PVYSHLHYDIIPGAEQVVRHPDILILEGLNVLQTG 209 (312)
T ss_dssp HHHHHHHHHHHH-TTCSCEEE-----EEEETTTTEEEEEEEEEECSCSEEEEECTTTTCCC
T ss_pred HHHHHHHHHHhC-CCcccCCc-----ccCChhhhhhhhhHHHhccCCCEEEECCccccCCc
Confidence 455777888888 55555655 47999999999999999999999999999999986
|
| >1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11 | Back alignment and structure |
|---|
Probab=97.79 E-value=7.8e-06 Score=93.64 Aligned_cols=87 Identities=17% Similarity=0.138 Sum_probs=59.5
Q ss_pred CccccchhhHHHHHh-------cCCeEeeeeCCCccccHHH------------HHHHHHHHHHHhHhCCCEEEEEecCCC
Q 000979 73 SGGQKKRVTTGEMMV-------GPALALFMDEISTGLDSST------------TFQIVNCLRQNIHINSGTAVISLLQPA 133 (1202)
Q Consensus 73 SGGQKqRvsIAraLv-------~~P~ILlLDEpTSGLDs~s------------a~~vv~~L~~~a~~~~tTiIiaihQp~ 133 (1202)
|++|+|++.++++++ .+|+++++||||++||+.. ..++++.|++++++.++|||++.|...
T Consensus 208 ~~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~ta~ld~~~~~~~~~~~r~~~~~~~l~~L~~la~~~~~tvii~~h~~~ 287 (349)
T 1pzn_A 208 SNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQA 287 (349)
T ss_dssp HHHHHHHHHHHHHHHHHSSSSSSCEEEEEEETSSTTHHHHCCSTTTHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECC-
T ss_pred hHHHHHHHHHHHHHHHHhccccCCCCEEEEeCchHhhhhhhcccccHHHHHHHHHHHHHHHHHHHHHcCcEEEEEccccc
Confidence 678999999999999 6899999999999999852 356777778877777888888866543
Q ss_pred hHHHhhhcceEEecCCcEEEEcCcchH
Q 000979 134 PETYDLFDDIILLSDGQIVYQGPRELV 160 (1202)
Q Consensus 134 ~s~~~~fD~IvvL~~G~vvy~G~~~el 160 (1202)
..-..|+++.+...|++++++++..+
T Consensus 288 -~~~~~~~~~~~~~~G~~l~~~~~~rL 313 (349)
T 1pzn_A 288 -RPDAFFGDPTRPIGGHILAHSATLRV 313 (349)
T ss_dssp ---------------CCCCCTTCSEEE
T ss_pred -ccccccCCccccCCcceEeecCcEEE
Confidence 44446677888889999998887665
|
| >2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.70 E-value=1.8e-07 Score=111.61 Aligned_cols=128 Identities=18% Similarity=0.212 Sum_probs=78.2
Q ss_pred EeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCCcc---cccceEEEeecCCC-CCCCCCH
Q 000979 631 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQE---TFARISGYCEQNDI-HSPFVTI 706 (1202)
Q Consensus 631 iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~---~~~~~~~~v~q~~~-~~~~lTv 706 (1202)
+++++++.+++| +.|+||||+|||||+++|++... .+.+.+++.+.... ...+.+..++|... ..|.+.+
T Consensus 55 ~~~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~~~----~~~i~i~g~~~~~~~~g~~~~~v~~lfq~a~~~~p~il~ 128 (499)
T 2dhr_A 55 RFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR----VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVF 128 (499)
T ss_dssp GTTTTSCCCCSE--EEEECSSSSSHHHHHHHHHHHTT----CCEEEEEGGGGTSSCTTHHHHHHHHHTTTSSSSSSCEEE
T ss_pred hhhhccCCCCce--EEEECCCCCCHHHHHHHHHHHhC----CCEEEEehhHHHHhhhhhHHHHHHHHHHHHHhcCCCEEE
Confidence 588999999999 99999999999999999998654 35677887654321 01122334455432 2344444
Q ss_pred HHHHHHHHHccCC-CCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCC
Q 000979 707 YESLLFSAWLRLS-PEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTS 784 (1202)
Q Consensus 707 ~e~l~~~~~~~~~-~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~illlDEPts 784 (1202)
.|++......+.. .....++.++.+++++. .|||||+|+..|+++...+|++ |||+..
T Consensus 129 IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~------------------~Ldg~~~~~~viviAatn~p~~--LD~aLl 187 (499)
T 2dhr_A 129 IDEIDAVGRKRGSGVGGGNDEREQTLNQLLV------------------EMDGFEKDTAIVVMAATNRPDI--LDPALL 187 (499)
T ss_dssp EECGGGTCCCSSSSTTTSSHHHHHHHHHHHH------------------HGGGCCSSCCCEEEECCSCGGG--SCTTTS
T ss_pred EehHHHHHHhhccCcCCCcHHHHHHHHHHHH------------------HhcccccCccEEEEEecCChhh--cCcccc
Confidence 4444321111100 00112333333444432 3778888888888888889987 788764
|
| >1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.69 E-value=6.4e-06 Score=87.01 Aligned_cols=71 Identities=6% Similarity=0.036 Sum_probs=42.6
Q ss_pred CCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHH-HHHhcceEEEEe
Q 000979 756 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSID-IFEAFDELFLMK 830 (1202)
Q Consensus 756 LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~-~~~~~d~v~~l~ 830 (1202)
.+.|+.+|..++..+..+|+.+.++ ++.++|.....+.+.++.. .+.++|+.+|..... +...||.++++.
T Consensus 60 ~~~g~~~r~~l~~~~f~~~~~~~~l--~~~~~p~v~~~~~~~~~~~--~~~~vv~~~~~l~e~~~~~~~d~vi~l~ 131 (206)
T 1jjv_A 60 TEQGELNRAALRERVFNHDEDKLWL--NNLLHPAIRERMKQKLAEQ--TAPYTLFVVPLLIENKLTALCDRILVVD 131 (206)
T ss_dssp ------CHHHHHHHHHTCHHHHHHH--HHHHHHHHHHHHHHHHHTC--CSSEEEEECTTTTTTTCGGGCSEEEEEE
T ss_pred ccCccccHHHHHHHHhCCHHHHHHH--HhccCHHHHHHHHHHHHhc--CCCEEEEEechhhhcCcHhhCCEEEEEE
Confidence 3678889999999888888654333 3355666666555555432 356888888876421 246788888885
|
| >3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=97.67 E-value=1.5e-05 Score=83.59 Aligned_cols=38 Identities=29% Similarity=0.150 Sum_probs=24.4
Q ss_pred eEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCC
Q 000979 629 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRK 666 (1202)
Q Consensus 629 ~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~ 666 (1202)
..+++|||+++++|++++|+||+||||||+.+.|++..
T Consensus 12 ~~~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 12 DLGTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp ------------CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 45799999999999999999999999999999998653
|
| >1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A | Back alignment and structure |
|---|
Probab=97.61 E-value=7.9e-06 Score=92.17 Aligned_cols=77 Identities=14% Similarity=0.159 Sum_probs=51.9
Q ss_pred eecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCCcc-------cc-----cceEEEe-ecCC
Q 000979 632 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQE-------TF-----ARISGYC-EQND 698 (1202)
Q Consensus 632 L~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~-------~~-----~~~~~~v-~q~~ 698 (1202)
++++++.+++|++++++||||+||||++..|++.... ..|+|.+.+.+.... .+ +..+.++ +|..
T Consensus 95 ~~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~--~g~kVllid~D~~r~~a~~ql~~~~~~~~~~~l~vip~~~~ 172 (320)
T 1zu4_A 95 KYRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYAE--LGYKVLIAAADTFRAGATQQLEEWIKTRLNNKVDLVKANKL 172 (320)
T ss_dssp -CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHHH--TTCCEEEEECCCSCHHHHHHHHHHHTTTSCTTEEEECCSST
T ss_pred ccCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHH--CCCeEEEEeCCCcchhHHHHHHHHHhccccCCceEEeCCCC
Confidence 4789999999999999999999999999999985431 135677766554321 12 3457777 6654
Q ss_pred CCCCCCCHHHHH
Q 000979 699 IHSPFVTIYESL 710 (1202)
Q Consensus 699 ~~~~~lTv~e~l 710 (1202)
...|..++.+++
T Consensus 173 ~~~p~~~~~~~l 184 (320)
T 1zu4_A 173 NADPASVVFDAI 184 (320)
T ss_dssp TCCHHHHHHHHH
T ss_pred CCCHHHHHHHHH
Confidence 444433344443
|
| >3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A* | Back alignment and structure |
|---|
Probab=97.61 E-value=8.7e-05 Score=85.59 Aligned_cols=57 Identities=12% Similarity=0.170 Sum_probs=39.7
Q ss_pred CCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCC-CEEEEEec
Q 000979 756 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTG-RTVVCTIH 813 (1202)
Q Consensus 756 LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g-~tvi~~~H 813 (1202)
.++.++++..+++..+.+|++++|.-..+..|... ....+.++.+...| +++++.+.
T Consensus 155 ~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~-~~~~~l~~~~~~~~~~~i~V~nK 212 (360)
T 3t34_A 155 SDSIVKDIENMVRSYIEKPNCIILAISPANQDLAT-SDAIKISREVDPSGDRTFGVLTK 212 (360)
T ss_dssp CSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGG-CHHHHHHHHSCTTCTTEEEEEEC
T ss_pred chhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCC-HHHHHHHHHhcccCCCEEEEEeC
Confidence 56788999999999999999777774333445433 44556666665555 57777776
|
| >2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.60 E-value=4.1e-05 Score=87.34 Aligned_cols=87 Identities=15% Similarity=0.122 Sum_probs=58.4
Q ss_pred HHHHhCCcccccccccCCcccccCccccchhhHHHHHhcCCe--EeeeeCCCccccHHHHHHHHHHHHHHhHhCCCEEEE
Q 000979 50 YLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPAL--ALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVI 127 (1202)
Q Consensus 50 il~~lgL~~~~dT~VG~~~~~gLSGGQKqRvsIAraLv~~P~--ILlLDEpTSGLDs~sa~~vv~~L~~~a~~~~tTiIi 127 (1202)
+++.+|+.+..+..++ .|| |||++|||+|+.+|+ +|+|| ||+|||+.+.. ++.....+.|+|+
T Consensus 245 lldt~Gl~~~~~~~~~-----eLS---kqr~~iaral~~~P~e~lLvLD-pttglD~~~~~------~~~~~~~g~t~ii 309 (359)
T 2og2_A 245 LCDTSGRLHTNYSLME-----ELI---ACKKAVGKIVSGAPNEILLVLD-GNTGLNMLPQA------REFNEVVGITGLI 309 (359)
T ss_dssp EEECCCCSSCCHHHHH-----HHH---HHHHHHHHHSTTCCSEEEEEEE-GGGGGGGHHHH------HHHHHHTCCCEEE
T ss_pred HHHhcCCChhhhhHHH-----HHH---HHHHHHHHHHhcCCCceEEEEc-CCCCCCHHHHH------HHHHHhcCCeEEE
Confidence 4455677666666553 689 999999999999999 99999 99999997552 2333234666666
Q ss_pred EecCCC-------hHHH-hhhcceEEecCCcE
Q 000979 128 SLLQPA-------PETY-DLFDDIILLSDGQI 151 (1202)
Q Consensus 128 aihQp~-------~s~~-~~fD~IvvL~~G~v 151 (1202)
.+|-.. .++. +..+.|..+..|+.
T Consensus 310 iThlD~~~~gG~~lsi~~~~~~pI~~ig~Ge~ 341 (359)
T 2og2_A 310 LTKLDGSARGGCVVSVVEELGIPVKFIGVGEA 341 (359)
T ss_dssp EESCTTCSCTHHHHHHHHHHCCCEEEEECSSS
T ss_pred EecCcccccccHHHHHHHHhCCCEEEEeCCCC
Confidence 666221 2222 23346666666653
|
| >4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis} | Back alignment and structure |
|---|
Probab=97.59 E-value=5.5e-06 Score=90.55 Aligned_cols=57 Identities=23% Similarity=0.139 Sum_probs=43.8
Q ss_pred eCCeEEEEEcCCCCCHHHHHHHHh---CCCCCceEEEEEE--------EcCccCCc----ccccceEEEeecCC
Q 000979 640 RPGVLTALMGVSGAGKTTLMDVLA---GRKTGGYITGNIT--------ISGYPKKQ----ETFARISGYCEQND 698 (1202)
Q Consensus 640 ~~Ge~~al~G~sGaGKSTLl~~l~---g~~~~~~~~G~i~--------~~g~~~~~----~~~~~~~~~v~q~~ 698 (1202)
++|++++|+|||||||||++++|+ |... +.+|.+. .+|.+... ...++.+++++|.+
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~--~d~g~i~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 96 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKALAESLNWRL--LDSGAIYRVLALAALHHQVDISTEEALVPLAAHLDVRFVSQ 96 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHHHHHHTTCEE--EEHHHHHHHHHHHHHHTTCCSSSSTTHHHHHHTCCEEEEEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhcCCCc--CCCCceehHhHHHHHHcCCCcccHHHHHHHHHcCCEEEecC
Confidence 789999999999999999999999 7654 4568877 77776532 23445677887753
|
| >2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=97.55 E-value=4e-06 Score=98.66 Aligned_cols=80 Identities=14% Similarity=0.102 Sum_probs=65.3
Q ss_pred ccccCccccchhhHHHHHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHhH---hCCC-----EEEEEecCCChHHHhhh
Q 000979 69 IRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIH---INSG-----TAVISLLQPAPETYDLF 140 (1202)
Q Consensus 69 ~~gLSGGQKqRvsIAraLv~~P~ILlLDEpTSGLDs~sa~~vv~~L~~~a~---~~~t-----TiIiaihQp~~s~~~~f 140 (1202)
...+|||| |||+|| +++|++ |+|||+.+...+.+.+++..+ ++|+ ||++..|... ...+
T Consensus 256 l~~lS~g~-qrvslA---l~~p~~------t~glD~~~~~~l~~ll~r~~~~~~~~GsiT~~~tVlv~tHdl~---~~ia 322 (438)
T 2dpy_A 256 LTRYAMAQ-REIALA---IGEPPA------TKGYPPSVFAKLPALVERAGNGIHGGGSITAFYTVLTEGDDQQ---DPIA 322 (438)
T ss_dssp HHHHHHHH-HHHHHH---TTCCCC------SSSCCTTHHHHHHHHHTTCSCCSTTSCEEEEEEEEECSSSCSC---CHHH
T ss_pred HHHHHHHH-HHHHHH---hCCCcc------cccCCHHHHHHHHHHHHHHHhccCCCCcccceeEEEEeCCCcc---chhh
Confidence 45699999 999999 888877 999999999999999988654 2253 5666555554 6778
Q ss_pred cceEEecCCcEEEEcCcchHH
Q 000979 141 DDIILLSDGQIVYQGPRELVL 161 (1202)
Q Consensus 141 D~IvvL~~G~vvy~G~~~el~ 161 (1202)
|++++|.+|+++..|++.++.
T Consensus 323 d~v~~l~dG~Ivl~~~~~~~~ 343 (438)
T 2dpy_A 323 DSARAILDGHIVLSRRLAEAG 343 (438)
T ss_dssp HHHHHHSSEEEEECHHHHHTT
T ss_pred ceEEEEeCcEEEEeCCHHHcc
Confidence 999999999999999987664
|
| >3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X* | Back alignment and structure |
|---|
Probab=97.55 E-value=3.1e-05 Score=79.88 Aligned_cols=33 Identities=30% Similarity=0.461 Sum_probs=30.3
Q ss_pred ecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCC
Q 000979 633 NGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRK 666 (1202)
Q Consensus 633 ~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~ 666 (1202)
+++++.+.+| +++|+||||||||||+++|.+..
T Consensus 18 ~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~l 50 (182)
T 3kta_A 18 KKVVIPFSKG-FTAIVGANGSGKSNIGDAILFVL 50 (182)
T ss_dssp SCEEEECCSS-EEEEEECTTSSHHHHHHHHHHHT
T ss_pred ccEEEecCCC-cEEEECCCCCCHHHHHHHHHHHH
Confidence 6889999999 99999999999999999998743
|
| >1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20 | Back alignment and structure |
|---|
Probab=97.52 E-value=0.00016 Score=84.06 Aligned_cols=44 Identities=9% Similarity=0.033 Sum_probs=35.1
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh---CCCEEEEEecCCC
Q 000979 772 ANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD---TGRTVVCTIHQPS 816 (1202)
Q Consensus 772 ~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~---~g~tvi~~~H~~~ 816 (1202)
.+|.+|++||+... |......+.+.+.++.. .+.++|+++|++.
T Consensus 124 ~~~~vlilDE~~~l-~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~ 170 (389)
T 1fnn_A 124 DLYMFLVLDDAFNL-APDILSTFIRLGQEADKLGAFRIALVIVGHNDA 170 (389)
T ss_dssp TCCEEEEEETGGGS-CHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTH
T ss_pred CCeEEEEEECcccc-chHHHHHHHHHHHhCCCCCcCCEEEEEEECCch
Confidence 45889999999876 88888888777766554 5788999999874
|
| >2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A* | Back alignment and structure |
|---|
Probab=97.50 E-value=2.3e-05 Score=97.50 Aligned_cols=132 Identities=14% Similarity=0.048 Sum_probs=70.6
Q ss_pred eEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCCc---ccccceEEEeecCCCCCCCCCHHHHHHH
Q 000979 636 SGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ---ETFARISGYCEQNDIHSPFVTIYESLLF 712 (1202)
Q Consensus 636 s~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~ 712 (1202)
|+.+++|+.++|+|++|+|||||++.|++....-...|+| .+|..... ...++.+++..|...+... ++
T Consensus 3 s~~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V-~~g~~~~d~~~~e~~~giti~~~~~~~~~~-~~------ 74 (665)
T 2dy1_A 3 TEGGAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRV-EEGTTTTDYTPEAKLHRTTVRTGVAPLLFR-GH------ 74 (665)
T ss_dssp ---CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCG-GGTCCSSCCSHHHHHTTSCCSCEEEEEEET-TE------
T ss_pred CCccCCCcEEEEECCCCChHHHHHHHHHHhcCCCCcccee-cCCcccccCCHHHHhcCCeEEecceEEeeC-CE------
Confidence 3567889999999999999999999999643211123554 34433221 1112223333332211100 00
Q ss_pred HHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHH
Q 000979 713 SAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 792 (1202)
Q Consensus 713 ~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~ 792 (1202)
.....|+. |...++ .......-..++.++++| |+.|+|+.+..
T Consensus 75 ---------------------------~~nliDTp----G~~~f~-----~~~~~~l~~ad~~ilVvD-~~~g~~~qt~~ 117 (665)
T 2dy1_A 75 ---------------------------RVFLLDAP----GYGDFV-----GEIRGALEAADAALVAVS-AEAGVQVGTER 117 (665)
T ss_dssp ---------------------------EEEEEECC----CSGGGH-----HHHHHHHHHCSEEEEEEE-TTTCSCHHHHH
T ss_pred ---------------------------EEEEEeCC----CccchH-----HHHHHHHhhcCcEEEEEc-CCcccchhHHH
Confidence 00122221 111121 112222335688899999 99999988773
Q ss_pred HHHHHHHHHHhCCCEEEEEecCCC
Q 000979 793 IVMRTVRNTVDTGRTVVCTIHQPS 816 (1202)
Q Consensus 793 ~v~~~l~~~~~~g~tvi~~~H~~~ 816 (1202)
. ++.+.+.+.++|++.|..+
T Consensus 118 ~----~~~~~~~~ip~ilv~NKiD 137 (665)
T 2dy1_A 118 A----WTVAERLGLPRMVVVTKLD 137 (665)
T ss_dssp H----HHHHHHTTCCEEEEEECGG
T ss_pred H----HHHHHHccCCEEEEecCCc
Confidence 3 3333345788889999765
|
| >2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=97.49 E-value=4e-05 Score=80.69 Aligned_cols=30 Identities=30% Similarity=0.387 Sum_probs=26.4
Q ss_pred EEeCCeEEEEEcCCCCCHHHHHHHHhCCCC
Q 000979 638 AFRPGVLTALMGVSGAGKTTLMDVLAGRKT 667 (1202)
Q Consensus 638 ~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~ 667 (1202)
++++|++++|+|||||||||++++|++...
T Consensus 2 ~i~~g~~i~l~G~~GsGKSTl~~~L~~~~~ 31 (207)
T 2j41_A 2 DNEKGLLIVLSGPSGVGKGTVRKRIFEDPS 31 (207)
T ss_dssp --CCCCEEEEECSTTSCHHHHHHHHHHCTT
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHhhC
Confidence 578999999999999999999999999763
|
| >1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X | Back alignment and structure |
|---|
Probab=97.47 E-value=0.00014 Score=81.40 Aligned_cols=64 Identities=9% Similarity=0.064 Sum_probs=45.2
Q ss_pred CCHHHHHHHHHHHHHh--hCCCEEEEeCCCCCCCHHH-HHHHHHHHHHHHhC-CC--EEEEEecCCCHHHHHhcceEE
Q 000979 756 LSTEQRKRLTIAVELV--ANPSIIFMDEPTSGLDARA-AAIVMRTVRNTVDT-GR--TVVCTIHQPSIDIFEAFDELF 827 (1202)
Q Consensus 756 LSgGqrqRv~ia~aL~--~~p~illlDEPtsgLD~~~-~~~v~~~l~~~~~~-g~--tvi~~~H~~~~~~~~~~d~v~ 827 (1202)
+|+|++ .+++.+. ..|.++++ +.+|... ...+.+.++++++. |. .+.+++|+-. .+.+++|.+.
T Consensus 101 ~~~~~~---~i~~~l~~~~~P~ilvl----NK~D~~~~~~~~~~~l~~l~~~~~~~~~i~iSA~~g~-~v~~l~~~i~ 170 (301)
T 1ega_A 101 WTPDDE---MVLNKLREGKAPVILAV----NKVDNVQEKADLLPHLQFLASQMNFLDIVPISAETGL-NVDTIAAIVR 170 (301)
T ss_dssp CCHHHH---HHHHHHHSSSSCEEEEE----ESTTTCCCHHHHHHHHHHHHTTSCCSEEEECCTTTTT-THHHHHHHHH
T ss_pred CCHHHH---HHHHHHHhcCCCEEEEE----ECcccCccHHHHHHHHHHHHHhcCcCceEEEECCCCC-CHHHHHHHHH
Confidence 898886 5566666 68999998 7888876 66777888877654 43 5666777654 4666666654
|
| >1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.46 E-value=4.4e-05 Score=78.66 Aligned_cols=37 Identities=16% Similarity=0.252 Sum_probs=28.6
Q ss_pred eCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEE
Q 000979 640 RPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITI 677 (1202)
Q Consensus 640 ~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~ 677 (1202)
.+|++++|+||||||||||+++|++.... ...|.|..
T Consensus 3 ~~g~~i~i~GpsGsGKSTL~~~L~~~~~~-~~~~~i~~ 39 (180)
T 1kgd_A 3 HMRKTLVLLGAHGVGRRHIKNTLITKHPD-RFAYPIPH 39 (180)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHCTT-TEECCCCE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCCc-cEEEeeec
Confidence 36899999999999999999999986432 13444443
|
| >3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A* | Back alignment and structure |
|---|
Probab=97.45 E-value=3.2e-06 Score=89.73 Aligned_cols=83 Identities=7% Similarity=0.025 Sum_probs=66.1
Q ss_pred hHHHHHHHHHhCCcccccccccCCcccccCccc----cchhhHHHHHhcCCeEeeeeCCCcc-------ccHHHHHHHHH
Q 000979 44 NVITDYYLKVLGLDVCADTMVGDEMIRGISGGQ----KKRVTTGEMMVGPALALFMDEISTG-------LDSSTTFQIVN 112 (1202)
Q Consensus 44 ~~~v~~il~~lgL~~~~dT~VG~~~~~gLSGGQ----KqRvsIAraLv~~P~ILlLDEpTSG-------LDs~sa~~vv~ 112 (1202)
.+.+.+.++.+++.+..+..+ ..+|+|| +||+++|++++.+|+++++||||++ ||+.++.++.+
T Consensus 67 ~~~~~~~l~~~~~~~~~~~~~-----~~~s~g~~~~~~~~~~~~~~li~~~~ll~~de~~~~~~d~~i~ld~~~~~~~~r 141 (211)
T 3asz_A 67 LALYLEHAQALLRGLPVEMPV-----YDFRAYTRSPRRTPVRPAPVVILEGILVLYPKELRDLMDLKVFVDADADERFIR 141 (211)
T ss_dssp HHHHHHHHHHHHTTCCEEECC-----EETTTTEECSSCEEECCCSEEEEESTTTTSSHHHHTTCSEEEEEECCHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCcCCCc-----ccCcccCCCCCeEEeCCCcEEEEeehhhccCHHHHHhcCEEEEEeCCHHHHHHH
Confidence 345677888888877655543 4688885 5799999999999999999999999 99999999999
Q ss_pred HHHHHhHhCCCEEEEEecC
Q 000979 113 CLRQNIHINSGTAVISLLQ 131 (1202)
Q Consensus 113 ~L~~~a~~~~tTiIiaihQ 131 (1202)
.+++.....|+|++.++|+
T Consensus 142 ~l~r~~~~~g~t~~~~~~~ 160 (211)
T 3asz_A 142 RLKRDVLERGRSLEGVVAQ 160 (211)
T ss_dssp HHHHHHHHSCCCHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHH
Confidence 9887544567777766664
|
| >3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1} | Back alignment and structure |
|---|
Probab=97.45 E-value=0.00013 Score=82.20 Aligned_cols=130 Identities=12% Similarity=0.150 Sum_probs=80.3
Q ss_pred EeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCCcccccceEEEeecCCCCCCCCCHHHHH
Q 000979 631 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESL 710 (1202)
Q Consensus 631 iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l 710 (1202)
-|+++.+-+++|+++.|.|++|+|||||+.-++..... +| ..+.|+.-+ ++..+-.
T Consensus 57 ~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~~a~---------~g---------~~vl~~slE------~s~~~l~ 112 (315)
T 3bh0_A 57 ELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSD---------ND---------DVVNLHSLE------MGKKENI 112 (315)
T ss_dssp HHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHHHHT---------TT---------CEEEEEESS------SCHHHHH
T ss_pred HHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH---------cC---------CeEEEEECC------CCHHHHH
Confidence 37777778999999999999999999998888642110 01 123444322 2322211
Q ss_pred HHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHH
Q 000979 711 LFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARA 790 (1202)
Q Consensus 711 ~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~ 790 (1202)
.++......+++.+..+ | ...||.++++|+..|...+.++++++.|+|...
T Consensus 113 ------------------~R~~~~~~~i~~~~l~~---~---~~~l~~~~~~~l~~a~~~l~~~~i~i~d~~~~~----- 163 (315)
T 3bh0_A 113 ------------------KRLIVTAGSINAQKIKA---A---RRDFASEDWGKLSMAIGEISNSNINIFDKAGQS----- 163 (315)
T ss_dssp ------------------HHHHHHHTTCCHHHHHS---C---HHHHCSSCHHHHHHHHHHHHTSCEEEECCSCCB-----
T ss_pred ------------------HHHHHHHcCCCHHHHhc---C---CCCCCHHHHHHHHHHHHHHhCCCEEEECCCCCC-----
Confidence 11111111112111111 0 012899999999999999999999999998643
Q ss_pred HHHHHHHHHHHHhC-CCE--EEEEec
Q 000979 791 AAIVMRTVRNTVDT-GRT--VVCTIH 813 (1202)
Q Consensus 791 ~~~v~~~l~~~~~~-g~t--vi~~~H 813 (1202)
...+...++++.++ |.. +|++-|
T Consensus 164 ~~~i~~~i~~l~~~~~~~~~lVVID~ 189 (315)
T 3bh0_A 164 VNYIWSKTRQTKRKNPGKRVIVMIDY 189 (315)
T ss_dssp HHHHHHHHHHHHHTSSSCCEEEEEEC
T ss_pred HHHHHHHHHHHHHhcCCCCeEEEEeC
Confidence 33456666666544 666 777766
|
| >3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=97.43 E-value=0.0006 Score=76.16 Aligned_cols=70 Identities=24% Similarity=0.274 Sum_probs=42.8
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHH----------HHHHHHHHHHHHHh----CCCEEEEEecCCC---HHH
Q 000979 757 STEQRKRLTIAVELVANPSIIFMDEPTSGLDAR----------AAAIVMRTVRNTVD----TGRTVVCTIHQPS---IDI 819 (1202)
Q Consensus 757 SgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~----------~~~~v~~~l~~~~~----~g~tvi~~~H~~~---~~~ 819 (1202)
+++++.|..++.+...+|.+|++||+.+-++.. ....++..+..... .+..+|.+|+++. ..+
T Consensus 97 ~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~~~l~~~l 176 (297)
T 3b9p_A 97 DGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAA 176 (297)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CEEEEEEESCGGGBCHHH
T ss_pred hHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcEEEEeecCChhhCCHHH
Confidence 456777777888888899999999998776532 22233444443321 2356778888753 334
Q ss_pred HHhcceE
Q 000979 820 FEAFDEL 826 (1202)
Q Consensus 820 ~~~~d~v 826 (1202)
...|++.
T Consensus 177 ~~R~~~~ 183 (297)
T 3b9p_A 177 LRRFTKR 183 (297)
T ss_dssp HHHCCEE
T ss_pred HhhCCeE
Confidence 4445543
|
| >2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A* | Back alignment and structure |
|---|
Probab=97.41 E-value=2.2e-05 Score=84.51 Aligned_cols=42 Identities=19% Similarity=0.195 Sum_probs=34.3
Q ss_pred ceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccC
Q 000979 635 VSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 682 (1202)
Q Consensus 635 vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 682 (1202)
-++..++|++++|.|+||||||||+++|+|. .|++.+.+.+.
T Consensus 13 ~~~~~~~g~~i~i~G~~GsGKSTl~~~L~~~------~g~v~~~~~~~ 54 (230)
T 2vp4_A 13 KYAEGTQPFTVLIEGNIGSGKTTYLNHFEKY------KNDICLLTEPV 54 (230)
T ss_dssp CBTTTCCCEEEEEECSTTSCHHHHHHTTGGG------TTTEEEECCTH
T ss_pred ccCCCCCceEEEEECCCCCCHHHHHHHHHhc------cCCeEEEecCH
Confidence 3445689999999999999999999999987 24577777653
|
| >4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A* | Back alignment and structure |
|---|
Probab=97.41 E-value=7.6e-05 Score=79.94 Aligned_cols=79 Identities=13% Similarity=0.098 Sum_probs=55.8
Q ss_pred cCccc-cchhhHHHHHhc-------CCeEeeeeCCCccccHH-------H-----HHHHHHHHHHHhHhCCCEEEEEecC
Q 000979 72 ISGGQ-KKRVTTGEMMVG-------PALALFMDEISTGLDSS-------T-----TFQIVNCLRQNIHINSGTAVISLLQ 131 (1202)
Q Consensus 72 LSGGQ-KqRvsIAraLv~-------~P~ILlLDEpTSGLDs~-------s-----a~~vv~~L~~~a~~~~tTiIiaihQ 131 (1202)
.++++ ++++..+++++. +|++++|||||++||+. + ..++++.|++++++.+.|||++.|.
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~l~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~g~tvi~vtH~ 179 (231)
T 4a74_A 100 FNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQV 179 (231)
T ss_dssp CSHHHHHHHHHHHHHHHHHHTTSSSCEEEEEEETSSHHHHHHSCSTTHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEC
T ss_pred CChHHHHHHHHHHHHHHHHhcccCCceeEEEECChHHHhccccCCCcchhHHHHHHHHHHHHHHHHHHHCCCeEEEEeec
Confidence 44444 444667777766 99999999999999983 2 2378888888877778999988774
Q ss_pred CCh---HHHhhhcceEEecCCc
Q 000979 132 PAP---ETYDLFDDIILLSDGQ 150 (1202)
Q Consensus 132 p~~---s~~~~fD~IvvL~~G~ 150 (1202)
.+. .+...+|++++|.+|+
T Consensus 180 ~~~~g~~~~~~~d~~l~l~~~~ 201 (231)
T 4a74_A 180 QANGGHILAHSATLRVYLRKGK 201 (231)
T ss_dssp C---------CCSEEEEEEECT
T ss_pred ccCcchhhHhhceEEEEEEecC
Confidence 432 3667789999998754
|
| >1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A* | Back alignment and structure |
|---|
Probab=97.40 E-value=6.5e-05 Score=94.13 Aligned_cols=61 Identities=11% Similarity=0.132 Sum_probs=50.4
Q ss_pred ccccCccccchhhHHHHH--hcCCeEeeeeCC---CccccHHHH-HHHHHHHHHHhHhCCCEEEEEecCCC
Q 000979 69 IRGISGGQKKRVTTGEMM--VGPALALFMDEI---STGLDSSTT-FQIVNCLRQNIHINSGTAVISLLQPA 133 (1202)
Q Consensus 69 ~~gLSGGQKqRvsIAraL--v~~P~ILlLDEp---TSGLDs~sa-~~vv~~L~~~a~~~~tTiIiaihQp~ 133 (1202)
..++|+|+++++.+|+++ +++|++++|||| ||+||..+. ..+++.+++ .+.|+++++|.+.
T Consensus 633 ~~g~S~~~~e~~~la~il~~a~~p~LlLLDEpgrGTs~lD~~~~~~~i~~~L~~----~g~~vl~~TH~~~ 699 (765)
T 1ewq_A 633 AGGKSTFMVEMEEVALILKEATENSLVLLDEVGRGTSSLDGVAIATAVAEALHE----RRAYTLFATHYFE 699 (765)
T ss_dssp --CCSHHHHHHHHHHHHHHHCCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHH----HTCEEEEECCCHH
T ss_pred HhcccHHHHHHHHHHHHHHhccCCCEEEEECCCCCCCCcCHHHHHHHHHHHHHh----CCCEEEEEeCCHH
Confidence 357899999999999999 999999999999 999998774 567777765 4678888888654
|
| >3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A* | Back alignment and structure |
|---|
Probab=97.36 E-value=2.7e-05 Score=81.78 Aligned_cols=50 Identities=22% Similarity=0.242 Sum_probs=38.7
Q ss_pred EEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEE--EEcCccC
Q 000979 630 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNI--TISGYPK 682 (1202)
Q Consensus 630 ~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i--~~~g~~~ 682 (1202)
...++.++..++|++++|+|||||||||++++|++.... .|.+ .++|.+.
T Consensus 13 ~~~~~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~~---~G~~~~~~d~d~~ 64 (200)
T 3uie_A 13 EKVDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQMLYQ---KGKLCYILDGDNV 64 (200)
T ss_dssp CHHHHHHHHTSCCEEEEEECSTTSSHHHHHHHHHHHHHH---TTCCEEEEEHHHH
T ss_pred CHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHHh---cCceEEEecCchh
Confidence 345677778899999999999999999999999986431 2344 6776544
|
| >1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A* | Back alignment and structure |
|---|
Probab=97.36 E-value=5.9e-05 Score=95.05 Aligned_cols=84 Identities=8% Similarity=-0.014 Sum_probs=62.0
Q ss_pred ccCccccchhhHHHHHhcCCeEeeeeCCCccccHHHHHHH-HHHHHHHhHhCCCEEEEEecCCChHHHhhhcceEEecCC
Q 000979 71 GISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQI-VNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDG 149 (1202)
Q Consensus 71 gLSGGQKqRvsIAraLv~~P~ILlLDEpTSGLDs~sa~~v-v~~L~~~a~~~~tTiIiaihQp~~s~~~~fD~IvvL~~G 149 (1202)
.+|+|++ |++.+...+++|++++|||||+|+|+.....+ ++.++.+....+.|+++++|.+. ..+++|++..+.+|
T Consensus 669 tf~~e~~-~~~~il~~a~~psLlLLDEp~~Gtd~~d~~~i~~~ll~~l~~~~g~~vl~~TH~~e--l~~l~d~~~~v~n~ 745 (800)
T 1wb9_A 669 TFMVEMT-ETANILHNATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFE--LTQLPEKMEGVANV 745 (800)
T ss_dssp -CHHHHH-HHHHHHHHCCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCGG--GGGHHHHSTTEEEE
T ss_pred hhhHHHH-HHHHHHHhccCCCEEEEECCCCCCChhHHHHHHHHHHHHHHhccCCeEEEEeCCHH--HHHHhhhhhceEEE
Confidence 4565554 55555556899999999999999998766665 56666665435889999988874 45689998888888
Q ss_pred cEEEEcCc
Q 000979 150 QIVYQGPR 157 (1202)
Q Consensus 150 ~vvy~G~~ 157 (1202)
++.+....
T Consensus 746 ~~~~~~~~ 753 (800)
T 1wb9_A 746 HLDALEHG 753 (800)
T ss_dssp EEEEEEET
T ss_pred EEEEEEcC
Confidence 88776543
|
| >1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A | Back alignment and structure |
|---|
Probab=97.34 E-value=0.0011 Score=75.67 Aligned_cols=143 Identities=15% Similarity=0.130 Sum_probs=77.2
Q ss_pred eecce-EEEeCCeEEEEEcCCCCCHHHHHHHHhCC--CCCceEEEEEEEcCccCCcccccceEEEeecCCCCCCCCCHHH
Q 000979 632 LNGVS-GAFRPGVLTALMGVSGAGKTTLMDVLAGR--KTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYE 708 (1202)
Q Consensus 632 L~~vs-~~i~~Ge~~al~G~sGaGKSTLl~~l~g~--~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~lTv~e 708 (1202)
|+.+- +-+++|+++.|.||+|+|||||+..++.. .... ..| ....+.|+.-+..+ ...+
T Consensus 111 LD~~LgGGl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~-------~gg-------~~~~vlyi~~E~~~----~~~~ 172 (343)
T 1v5w_A 111 FDKLLGGGIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGA-------GGY-------PGGKIIFIDTENTF----RPDR 172 (343)
T ss_dssp HHHHTTSSBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBT-------TTB-------CCCEEEEEESSSCC----CHHH
T ss_pred HHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccc-------cCC-------CCCeEEEEECCCCC----CHHH
Confidence 44433 57999999999999999999999988863 2100 000 01224455443321 1111
Q ss_pred HHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHH-HHHHHHHHHHHh----hCCCEEEEeCCC
Q 000979 709 SLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTE-QRKRLTIAVELV----ANPSIIFMDEPT 783 (1202)
Q Consensus 709 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgG-qrqRv~ia~aL~----~~p~illlDEPt 783 (1202)
-......+. .+. +++++.+.+. +..++. +.+.+..++.++ .+++++++|+.+
T Consensus 173 l~~~~~~~g----~~~-------~~~l~~l~~~------------~~~~~e~~~~ll~~l~~~i~~~~~~~~lvVIDsl~ 229 (343)
T 1v5w_A 173 LRDIADRFN----VDH-------DAVLDNVLYA------------RAYTSEHQMELLDYVAAKFHEEAGIFKLLIIDSIM 229 (343)
T ss_dssp HHHHHHHTT----CCH-------HHHHHTEEEE------------ECCSTTHHHHHHHHHHHHHHHSCSSEEEEEEETSG
T ss_pred HHHHHHHcC----CCH-------HHHHhceeEe------------ecCCHHHHHHHHHHHHHHHHhcCCCccEEEEechH
Confidence 111221111 111 1233322111 012222 234555666666 568999999999
Q ss_pred CCCCHH------------HHHHHHHHHHHHHhC-CCEEEEEecCC
Q 000979 784 SGLDAR------------AAAIVMRTVRNTVDT-GRTVVCTIHQP 815 (1202)
Q Consensus 784 sgLD~~------------~~~~v~~~l~~~~~~-g~tvi~~~H~~ 815 (1202)
+-.+.. ....++..|++++++ |.+||++.|-.
T Consensus 230 ~l~~~~~~~~g~~~~r~~~l~~~l~~L~~la~~~~~~Vi~~nq~~ 274 (343)
T 1v5w_A 230 ALFRVDFSGRGELAERQQKLAQMLSRLQKISEEYNVAVFVTNQMT 274 (343)
T ss_dssp GGHHHHCCGGGCHHHHHHHHHHHHHHHHHHHHHHTCEEEEEECC-
T ss_pred HHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEeece
Confidence 866442 124455556666644 88888888853
|
| >1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A | Back alignment and structure |
|---|
Probab=97.31 E-value=3.7e-05 Score=88.39 Aligned_cols=37 Identities=22% Similarity=0.089 Sum_probs=34.6
Q ss_pred EEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCC
Q 000979 630 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRK 666 (1202)
Q Consensus 630 ~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~ 666 (1202)
.+|+++++.+++|++++|+||||||||||+++|+|..
T Consensus 157 ~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~ 193 (377)
T 1svm_A 157 DFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLELC 193 (377)
T ss_dssp HHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred HHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 4799999999999999999999999999999999853
|
| >2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A* | Back alignment and structure |
|---|
Probab=97.28 E-value=1.4e-05 Score=91.13 Aligned_cols=80 Identities=14% Similarity=0.085 Sum_probs=64.4
Q ss_pred ccccCccccchhhHHHHHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHhH-hCCC-----EEEEEecCCChHHHhhhcc
Q 000979 69 IRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIH-INSG-----TAVISLLQPAPETYDLFDD 142 (1202)
Q Consensus 69 ~~gLSGGQKqRvsIAraLv~~P~ILlLDEpTSGLDs~sa~~vv~~L~~~a~-~~~t-----TiIiaihQp~~s~~~~fD~ 142 (1202)
...+|+|| |||++| +.+|++ |+|||+.....+.+.+++..+ .+|+ ||++..|... -..+|+
T Consensus 169 ~~~lS~g~-r~v~la---l~~p~~------t~Gldp~~~~~l~~ller~~~~~~GsiT~~~tVl~~thdl~---~~i~d~ 235 (347)
T 2obl_A 169 VTRYARAA-RDVGLA---SGEPDV------RGGFPPSVFSSLPKLLERAGPAPKGSITAIYTVLLESDNVN---DPIGDE 235 (347)
T ss_dssp HHHHHHHH-HHHHHH---TTCCCC------BTTBCHHHHHHHHHHHTTCEECSSSEEEEEEEEECCSSCCC---CHHHHH
T ss_pred HHHHHHHH-HHHHHH---cCCCCc------ccCCCHHHHHHHHHHHHHHhCCCCCCeeeEEEEEEeCCCCC---Chhhhh
Confidence 45799999 999999 578876 999999999999999987653 3455 5666655544 466899
Q ss_pred eEEecCCcEEEEcCcchHH
Q 000979 143 IILLSDGQIVYQGPRELVL 161 (1202)
Q Consensus 143 IvvL~~G~vvy~G~~~el~ 161 (1202)
+++|.+|+++..|+.+++.
T Consensus 236 v~~i~dG~Ivl~~~l~~~~ 254 (347)
T 2obl_A 236 VRSILDGHIVLTRELAEEN 254 (347)
T ss_dssp HHHHCSEEEEBCHHHHTTT
T ss_pred eEEeeCcEEEEeCCHHHcC
Confidence 9999999999999887663
|
| >2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=97.25 E-value=0.00018 Score=78.58 Aligned_cols=62 Identities=11% Similarity=0.040 Sum_probs=49.6
Q ss_pred cchhhHHHHHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHhHhCCCEEEEEecCCChHHHhhhcceEEecC
Q 000979 77 KKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSD 148 (1202)
Q Consensus 77 KqRvsIAraLv~~P~ILlLDEpTSGLDs~sa~~vv~~L~~~a~~~~tTiIiaihQp~~s~~~~fD~IvvL~~ 148 (1202)
.-|++||++|..+|+++++|||| |..+...+++ . + ..+.+|++++|... ....+|++++|..
T Consensus 86 ~l~~~la~aL~~~p~illlDEp~---D~~~~~~~l~---~-~-~~g~~vl~t~H~~~--~~~~~dri~~l~~ 147 (261)
T 2eyu_A 86 SFADALRAALREDPDVIFVGEMR---DLETVETALR---A-A-ETGHLVFGTLHTNT--AIDTIHRIVDIFP 147 (261)
T ss_dssp CHHHHHHHHHHHCCSEEEESCCC---SHHHHHHHHH---H-H-HTTCEEEEEECCSS--HHHHHHHHHHTSC
T ss_pred HHHHHHHHHHhhCCCEEEeCCCC---CHHHHHHHHH---H-H-ccCCEEEEEeCcch--HHHHHHHHhhhcC
Confidence 34899999999999999999999 8877654433 2 3 35789998888755 6788999999864
|
| >3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=97.24 E-value=0.00013 Score=77.15 Aligned_cols=28 Identities=32% Similarity=0.468 Sum_probs=26.0
Q ss_pred eCCeEEEEEcCCCCCHHHHHHHHhCCCC
Q 000979 640 RPGVLTALMGVSGAGKTTLMDVLAGRKT 667 (1202)
Q Consensus 640 ~~Ge~~al~G~sGaGKSTLl~~l~g~~~ 667 (1202)
++|++++|+||||||||||++.|++...
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 6899999999999999999999998764
|
| >2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A* | Back alignment and structure |
|---|
Probab=97.20 E-value=0.00014 Score=86.06 Aligned_cols=71 Identities=15% Similarity=0.208 Sum_probs=49.6
Q ss_pred hCCCEEEEeCCCCCCCH-HHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEE-EecCCEEEEEcCCCc
Q 000979 772 ANPSIIFMDEPTSGLDA-RAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFL-MKRGGQEIYVGPLGR 843 (1202)
Q Consensus 772 ~~p~illlDEPtsgLD~-~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~-l~~gG~~~~~G~~~~ 843 (1202)
.+|++|++||+..-.+. .++..+...+..+.+.|+.+|+++|.+..++..+.+++.- +. .|.++..++++.
T Consensus 193 ~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~L~sR~~-~g~~i~l~~p~~ 265 (440)
T 2z4s_A 193 KKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQ-MGLVAKLEPPDE 265 (440)
T ss_dssp TTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHHHHHHHH-SSBCCBCCCCCH
T ss_pred CCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHHHhhcc-CCeEEEeCCCCH
Confidence 38999999999887764 6777888999888777899999999864322112222222 22 367777777763
|
| >1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=97.19 E-value=0.00012 Score=77.11 Aligned_cols=69 Identities=10% Similarity=-0.031 Sum_probs=54.2
Q ss_pred HHHHHHHhCCcccccccccCCcccccCccccch-hhHHHHHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHhH
Q 000979 47 TDYYLKVLGLDVCADTMVGDEMIRGISGGQKKR-VTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIH 119 (1202)
Q Consensus 47 v~~il~~lgL~~~~dT~VG~~~~~gLSGGQKqR-vsIAraLv~~P~ILlLDEpTSGLDs~sa~~vv~~L~~~a~ 119 (1202)
+..++...+++.. .|++. .-.+||||||| +..+++++.+|.++++||||||||.....++.+.|.+...
T Consensus 129 ~~~~~~~~~~~~~---~v~nK-~D~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~~~ 198 (210)
T 1pui_A 129 MIEWAVDSNIAVL---VLLTK-ADKLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTWFS 198 (210)
T ss_dssp HHHHHHHTTCCEE---EEEEC-GGGSCHHHHHHHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCCeE---EEEec-ccCCCchhHHHHHHHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHHHHHh
Confidence 3445556666532 23422 34699999999 8999999999999999999999999999999999988764
|
| >2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A* | Back alignment and structure |
|---|
Probab=97.17 E-value=0.00089 Score=75.80 Aligned_cols=143 Identities=22% Similarity=0.239 Sum_probs=77.4
Q ss_pred eecce-EEEeCCeEEEEEcCCCCCHHHHHHHHhCCC-CCceEEEEEEEcCccCCcccccceEEEeecCCCCCCCCCHHHH
Q 000979 632 LNGVS-GAFRPGVLTALMGVSGAGKTTLMDVLAGRK-TGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYES 709 (1202)
Q Consensus 632 L~~vs-~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~-~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~lTv~e~ 709 (1202)
|+.+- +-+++|+++.|.||+|+|||||+..++... .+.. .| | ....+.|+.-+..+. ..+-
T Consensus 96 LD~~L~GGl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~-~g-----g-------~~~~vlyi~~e~~~~----~~~l 158 (324)
T 2z43_A 96 LDGLLAGGIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPE-KG-----G-------LSGKAVYIDTEGTFR----WERI 158 (324)
T ss_dssp HHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGG-GT-----C-------CSCEEEEEESSSCCC----HHHH
T ss_pred HHHhcCCCCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccc-cC-----C-------CCCeEEEEECCCCCC----HHHH
Confidence 44432 579999999999999999999999887531 1100 00 0 012344554432211 1111
Q ss_pred HHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHH-HHHHHHHHHHHh---hCCCEEEEeCCCCC
Q 000979 710 LLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTE-QRKRLTIAVELV---ANPSIIFMDEPTSG 785 (1202)
Q Consensus 710 l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgG-qrqRv~ia~aL~---~~p~illlDEPtsg 785 (1202)
......+. .+. +++++.+- +. +..++. +.+.+..++.++ .+|+++++|+.++-
T Consensus 159 ~~~~~~~g----~~~-------~~~~~~l~--------~~----~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l 215 (324)
T 2z43_A 159 ENMAKALG----LDI-------DNVMNNIY--------YI----RAINTDHQIAIVDDLQELVSKDPSIKLIVVDSVTSH 215 (324)
T ss_dssp HHHHHHTT----CCH-------HHHHHTEE--------EE----ECCSHHHHHHHHHHHHHHHHHCTTEEEEEETTTTHH
T ss_pred HHHHHHhC----CCH-------HHHhccEE--------EE----eCCCHHHHHHHHHHHHHHHHhccCCCEEEEeCcHHH
Confidence 11111111 111 12222111 10 112333 345677788888 57999999999976
Q ss_pred CCH--------HH----HHHHHHHHHHHHhC-CCEEEEEecC
Q 000979 786 LDA--------RA----AAIVMRTVRNTVDT-GRTVVCTIHQ 814 (1202)
Q Consensus 786 LD~--------~~----~~~v~~~l~~~~~~-g~tvi~~~H~ 814 (1202)
.+. .. ...++..|++++++ |.+||++.|-
T Consensus 216 ~~~~~~~~g~~~~r~~~~~~~l~~L~~la~~~~~~Vi~~nq~ 257 (324)
T 2z43_A 216 FRAEYPGRENLAVRQQKLNKHLHQLTRLAEVYDIAVIITNQV 257 (324)
T ss_dssp HHHHSCTTTSHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEC
T ss_pred hhhhhcCcccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEcce
Confidence 532 11 23455556666544 8899988774
|
| >2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A* | Back alignment and structure |
|---|
Probab=97.17 E-value=0.00022 Score=75.10 Aligned_cols=30 Identities=27% Similarity=0.285 Sum_probs=27.1
Q ss_pred EEEeCCeEEEEEcCCCCCHHHHHHHHhCCC
Q 000979 637 GAFRPGVLTALMGVSGAGKTTLMDVLAGRK 666 (1202)
Q Consensus 637 ~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~ 666 (1202)
-++++|++++|+|+|||||||+.+.|++..
T Consensus 16 ~~~~~~~~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 16 PRGSKTFIIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp CCSCCCEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred ccCCCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 367789999999999999999999999864
|
| >2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus} | Back alignment and structure |
|---|
Probab=97.12 E-value=0.0014 Score=77.67 Aligned_cols=169 Identities=16% Similarity=0.190 Sum_probs=92.1
Q ss_pred eecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCCcccccceEEEeecCCCCCCCCCHHHHHH
Q 000979 632 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESLL 711 (1202)
Q Consensus 632 L~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~ 711 (1202)
|+.+.+-+++|+++.|.|++|+|||||..-++...... . | ..+.|+.-+ ++..+-..
T Consensus 190 LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~--~------g---------~~vl~~slE------~~~~~l~~ 246 (444)
T 2q6t_A 190 LDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNAALK--E------G---------VGVGIYSLE------MPAAQLTL 246 (444)
T ss_dssp HHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHHHHT--T------C---------CCEEEEESS------SCHHHHHH
T ss_pred hhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHh--C------C---------CeEEEEECC------CCHHHHHH
Confidence 67777779999999999999999999988887532100 0 0 012232221 22222111
Q ss_pred -H-HHHccCC------CCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHh--hCCCEEEEeC
Q 000979 712 -F-SAWLRLS------PEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELV--ANPSIIFMDE 781 (1202)
Q Consensus 712 -~-~~~~~~~------~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~aL~--~~p~illlDE 781 (1202)
+ +.....+ ...+.++. .++.+.++.+.-.+.. +-+ ..++|..+- .+.++.+. .+|+++++|.
T Consensus 247 R~~~~~~~i~~~~l~~g~l~~~~~-~~~~~a~~~l~~~~l~---i~d--~~~~s~~~l--~~~~~~l~~~~~~~lIvID~ 318 (444)
T 2q6t_A 247 RMMCSEARIDMNRVRLGQLTDRDF-SRLVDVASRLSEAPIY---IDD--TPDLTLMEV--RARARRLVSQNQVGLIIIDY 318 (444)
T ss_dssp HHHHHHTTCCTTTCCGGGCCHHHH-HHHHHHHHHHHTSCEE---EEC--CTTCBHHHH--HHHHHHHHHHSCCCEEEEEC
T ss_pred HHHHHHcCCCHHHHhCCCCCHHHH-HHHHHHHHHHhcCCEE---EEC--CCCCCHHHH--HHHHHHHHHHcCCCEEEEcC
Confidence 0 1111110 01223322 2233333333221111 111 124777665 34556665 4799999999
Q ss_pred CCCCCCH----------HHHHHHHHHHHHHHhC-CCEEEEEecCC-----------CH-------HHHHhcceEEEEec
Q 000979 782 PTSGLDA----------RAAAIVMRTVRNTVDT-GRTVVCTIHQP-----------SI-------DIFEAFDELFLMKR 831 (1202)
Q Consensus 782 PtsgLD~----------~~~~~v~~~l~~~~~~-g~tvi~~~H~~-----------~~-------~~~~~~d~v~~l~~ 831 (1202)
.+.-.++ .....+.+.|+.++++ +.+||+++|-. .. .+.+.+|.++.|.+
T Consensus 319 l~~~~~~~~~~~~~~r~~~i~~i~~~Lk~lAke~~v~vi~lsql~r~~e~r~~~~p~l~dlr~Sg~ie~~aD~vi~L~r 397 (444)
T 2q6t_A 319 LQLMSGPGSGKSGENRQQEIAAISRGLKALARELGIPIIALSQLSRAVEARPNKRPMLSDLRESGSIEQDADLVMFIYR 397 (444)
T ss_dssp GGGCBCC-------CHHHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGGSSSSCSCCGGGGGGGCTTGGGCSEEEEEEE
T ss_pred hhhcCCCcCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEecCCcccccCCCCCCChHHhcchhHHHHhCCEEEEEec
Confidence 8754332 1224667778888765 89999998832 10 23456788888864
|
| >3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A | Back alignment and structure |
|---|
Probab=97.06 E-value=9.3e-05 Score=83.46 Aligned_cols=53 Identities=15% Similarity=0.223 Sum_probs=44.1
Q ss_pred CceeEEeeeEEEEecCchhhhcccccCceEEee--------------cceEEEeCCeEEEEEcCCCCCHHHHHHHHhCC
Q 000979 601 PHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLN--------------GVSGAFRPGVLTALMGVSGAGKTTLMDVLAGR 665 (1202)
Q Consensus 601 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~--------------~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~ 665 (1202)
...+.|+|+++.|+. .+..|+ |+++.+.+|+.++|+||+|+|||||++.|++.
T Consensus 131 ~~ri~Fe~ltp~yP~------------er~~Le~~~~~~~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~ 197 (422)
T 3ice_A 131 RNKILFENLTPLHAN------------SRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQS 197 (422)
T ss_dssp TTSCCTTTSCEESCC------------SBCCCCCTTCCTTHHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHH
T ss_pred cCCceeccccccCCC------------CccccccCCCCcccccceeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHH
Confidence 345788999988763 233566 89999999999999999999999999999873
|
| >3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0 | Back alignment and structure |
|---|
Probab=97.04 E-value=0.00023 Score=73.84 Aligned_cols=28 Identities=25% Similarity=0.519 Sum_probs=25.2
Q ss_pred EeCCeEEEEEcCCCCCHHHHHHHHhCCC
Q 000979 639 FRPGVLTALMGVSGAGKTTLMDVLAGRK 666 (1202)
Q Consensus 639 i~~Ge~~al~G~sGaGKSTLl~~l~g~~ 666 (1202)
..+|++++|+||||||||||++.|.+..
T Consensus 16 ~~~g~~ivl~GPSGaGKsTL~~~L~~~~ 43 (197)
T 3ney_A 16 FQGRKTLVLIGASGVGRSHIKNALLSQN 43 (197)
T ss_dssp CCSCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCCCCEEEEECcCCCCHHHHHHHHHhhC
Confidence 3489999999999999999999999854
|
| >1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A* | Back alignment and structure |
|---|
Probab=97.01 E-value=0.00033 Score=69.62 Aligned_cols=30 Identities=27% Similarity=0.663 Sum_probs=24.5
Q ss_pred ecceEEEeCCeEEEEEcCCCCCHHHHHHHHh
Q 000979 633 NGVSGAFRPGVLTALMGVSGAGKTTLMDVLA 663 (1202)
Q Consensus 633 ~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~ 663 (1202)
++.++.+.+| +++|+|||||||||++++|.
T Consensus 15 ~~~~i~f~~g-~~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 15 SDTVVEFKEG-INLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp SSEEEECCSE-EEEEECCTTSSHHHHHHHHH
T ss_pred cceEEEcCCC-eEEEECCCCCCHHHHHHHHH
Confidence 3445555565 99999999999999999986
|
| >1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A* | Back alignment and structure |
|---|
Probab=96.98 E-value=0.00029 Score=71.94 Aligned_cols=36 Identities=28% Similarity=0.354 Sum_probs=28.8
Q ss_pred eCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCcc
Q 000979 640 RPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP 681 (1202)
Q Consensus 640 ~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 681 (1202)
.+|++++|+|||||||||++++|++.. |.+.+++.+
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~------g~~~i~~d~ 41 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQL------HAAFLDGDF 41 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH------TCEEEEGGG
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhh------CcEEEeCcc
Confidence 468999999999999999999998753 344555543
|
| >3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=96.95 E-value=3.9e-05 Score=86.13 Aligned_cols=39 Identities=21% Similarity=0.173 Sum_probs=32.7
Q ss_pred ceEEeecceEEEeCCe------EEEEEcCCCCCHHHHHHHHhCCC
Q 000979 628 KLVLLNGVSGAFRPGV------LTALMGVSGAGKTTLMDVLAGRK 666 (1202)
Q Consensus 628 ~~~iL~~vs~~i~~Ge------~~al~G~sGaGKSTLl~~l~g~~ 666 (1202)
.+..|++++..+.+++ ++||+||||||||||+++|.+..
T Consensus 72 ~~~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll 116 (321)
T 3tqc_A 72 ARQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALL 116 (321)
T ss_dssp HHHHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 3446777777777776 99999999999999999999854
|
| >3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A | Back alignment and structure |
|---|
Probab=96.88 E-value=0.0011 Score=77.29 Aligned_cols=25 Identities=40% Similarity=0.422 Sum_probs=23.1
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCC
Q 000979 641 PGVLTALMGVSGAGKTTLMDVLAGR 665 (1202)
Q Consensus 641 ~Ge~~al~G~sGaGKSTLl~~l~g~ 665 (1202)
++.+++++||+|+||||++..|++.
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~ 120 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYF 120 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999999999874
|
| >2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A* | Back alignment and structure |
|---|
Probab=96.88 E-value=0.0002 Score=80.16 Aligned_cols=54 Identities=9% Similarity=0.089 Sum_probs=39.5
Q ss_pred ccccCccccchhhHHHHHhcCCeEeeeeCCCcc-ccHHHHHHHHHHHHHHhHhCCCEEEEEec
Q 000979 69 IRGISGGQKKRVTTGEMMVGPALALFMDEISTG-LDSSTTFQIVNCLRQNIHINSGTAVISLL 130 (1202)
Q Consensus 69 ~~gLSGGQKqRvsIAraLv~~P~ILlLDEpTSG-LDs~sa~~vv~~L~~~a~~~~tTiIiaih 130 (1202)
.+++|||||||+.+||+++ +|++||||++ ||+... +.++++....+.++|++-|
T Consensus 111 ~~~~sgg~rqrv~~ara~~----ll~ldePt~~~Ld~~~~----~~l~~l~~~~~iilV~~K~ 165 (301)
T 2qnr_A 111 LHDESGLNRRHIIDNRVHC----CFYFISPFGHGLKPLDV----AFMKAIHNKVNIVPVIAKA 165 (301)
T ss_dssp HHHHTSSCCTTCCCCCCCE----EEEEECSSSSSCCHHHH----HHHHHHTTTSCEEEEECCG
T ss_pred HHHhCHHhhhhhhhhhhhh----eeeeecCcccCCCHHHH----HHHHHHHhcCCEEEEEEeC
Confidence 3689999999999999985 9999999985 999763 4444443323455555544
|
| >2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=96.85 E-value=0.00042 Score=80.29 Aligned_cols=26 Identities=19% Similarity=0.391 Sum_probs=23.5
Q ss_pred eCCeEEEEEcCCCCCHHHHHHHHhCC
Q 000979 640 RPGVLTALMGVSGAGKTTLMDVLAGR 665 (1202)
Q Consensus 640 ~~Ge~~al~G~sGaGKSTLl~~l~g~ 665 (1202)
+++..+.|.||+|+|||||++.+++.
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~ 68 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSK 68 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 46789999999999999999999874
|
| >1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2 | Back alignment and structure |
|---|
Probab=96.85 E-value=0.00037 Score=70.94 Aligned_cols=27 Identities=33% Similarity=0.311 Sum_probs=24.0
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCCC
Q 000979 641 PGVLTALMGVSGAGKTTLMDVLAGRKT 667 (1202)
Q Consensus 641 ~Ge~~al~G~sGaGKSTLl~~l~g~~~ 667 (1202)
.|++++|+|||||||||++++|++...
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l~ 29 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQLN 29 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 467899999999999999999998643
|
| >3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.84 E-value=0.00033 Score=75.41 Aligned_cols=66 Identities=17% Similarity=0.107 Sum_probs=39.7
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCC-CCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcc
Q 000979 757 STEQRKRLTIAVELVANPSIIFMDEPTS-GLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFD 824 (1202)
Q Consensus 757 SgGqrqRv~ia~aL~~~p~illlDEPts-gLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d 824 (1202)
+.|.-.+.. ...+.+-+++++||.-. ++|.......++.+.+...+-++++++.--+.....+.++
T Consensus 162 Tpg~l~~~l--~~~l~~~~~lVlDEah~~~~~~~~~~~~l~~i~~~~~~~~~il~SAT~~~~~~~~~~~ 228 (235)
T 3llm_A 162 TVGVLLRKL--EAGIRGISHVIVDEIHERDINTDFLLVVLRDVVQAYPEVRIVLMSATIDTSMFCEYFF 228 (235)
T ss_dssp EHHHHHHHH--HHCCTTCCEEEECCTTSCCHHHHHHHHHHHHHHHHCTTSEEEEEECSSCCHHHHHHTT
T ss_pred CHHHHHHHH--HhhhcCCcEEEEECCccCCcchHHHHHHHHHHHhhCCCCeEEEEecCCCHHHHHHHcC
Confidence 456655542 33578999999999976 6777666444444443323335666666555444445554
|
| >3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=96.81 E-value=0.00087 Score=75.04 Aligned_cols=30 Identities=27% Similarity=0.330 Sum_probs=26.3
Q ss_pred EEEeCCeEEEEEcCCCCCHHHHHHHHhCCC
Q 000979 637 GAFRPGVLTALMGVSGAGKTTLMDVLAGRK 666 (1202)
Q Consensus 637 ~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~ 666 (1202)
+.++++..+.|.||+|+|||||.++|++..
T Consensus 44 ~~~~~~~~vLL~Gp~GtGKT~la~ala~~~ 73 (301)
T 3cf0_A 44 FGMTPSKGVLFYGPPGCGKTLLAKAIANEC 73 (301)
T ss_dssp HCCCCCSEEEEECSSSSSHHHHHHHHHHHT
T ss_pred cCCCCCceEEEECCCCcCHHHHHHHHHHHh
Confidence 346788899999999999999999999754
|
| >2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=96.73 E-value=0.00017 Score=73.36 Aligned_cols=40 Identities=18% Similarity=0.135 Sum_probs=32.1
Q ss_pred HHHHHHHhCCcccccccccCCcccccCccccchhhHHHHHhcCCeE
Q 000979 47 TDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALA 92 (1202)
Q Consensus 47 v~~il~~lgL~~~~dT~VG~~~~~gLSGGQKqRvsIAraLv~~P~I 92 (1202)
.+.+++. .|+ ..||.||+ ++||||||||+|||+++++|+|
T Consensus 85 l~~~i~~-~l~-g~dt~i~E----glSgGq~qri~lARall~~p~i 124 (171)
T 2f1r_A 85 LDWIYER-YLS-DYDLVITE----GFSKAGKDRIVVVKKPEEVEHF 124 (171)
T ss_dssp HHHHHHH-HTT-TCSEEEEE----SCGGGCCCEEEECSSGGGGGGG
T ss_pred HHHHHHh-hCC-CCCEEEEC----CcCCCCCcEEEEEecccCCCcc
Confidence 4455555 134 68999993 4999999999999999999986
|
| >1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=96.72 E-value=0.0006 Score=71.45 Aligned_cols=29 Identities=28% Similarity=0.324 Sum_probs=26.1
Q ss_pred EEeCCeEEEEEcCCCCCHHHHHHHHhCCC
Q 000979 638 AFRPGVLTALMGVSGAGKTTLMDVLAGRK 666 (1202)
Q Consensus 638 ~i~~Ge~~al~G~sGaGKSTLl~~l~g~~ 666 (1202)
..++|++++|+|+||||||||++.|++..
T Consensus 18 ~~~~~~~i~i~G~~GsGKstl~~~l~~~~ 46 (201)
T 1rz3_A 18 KTAGRLVLGIDGLSRSGKTTLANQLSQTL 46 (201)
T ss_dssp CCSSSEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred ccCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 35789999999999999999999999854
|
| >3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A* | Back alignment and structure |
|---|
Probab=96.66 E-value=0.00097 Score=76.11 Aligned_cols=60 Identities=8% Similarity=0.032 Sum_probs=46.0
Q ss_pred hHHHHHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHhHhCCCEEEEEecCCChHHHhhhcceEEecCCc
Q 000979 81 TTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQ 150 (1202)
Q Consensus 81 sIAraLv~~P~ILlLDEpTSGLDs~sa~~vv~~L~~~a~~~~tTiIiaihQp~~s~~~~fD~IvvL~~G~ 150 (1202)
+||++|..+|+++++|||| |..+. +.+.+.+ ..|.|+++++|..+. ...+||+++|..|.
T Consensus 188 ~La~aL~~~PdvillDEp~---d~e~~----~~~~~~~-~~G~~vl~t~H~~~~--~~~~dRli~l~~~~ 247 (356)
T 3jvv_A 188 ALRSALREDPDIILVGEMR---DLETI----RLALTAA-ETGHLVFGTLHTTSA--AKTIDRVVDVFPAE 247 (356)
T ss_dssp HHHHHTTSCCSEEEESCCC---SHHHH----HHHHHHH-HTTCEEEEEESCSSH--HHHHHHHHHTSCHH
T ss_pred HHHHHhhhCcCEEecCCCC---CHHHH----HHHHHHH-hcCCEEEEEEccChH--HHHHHHHhhhcCcc
Confidence 8999999999999999999 66554 3333334 357888888887663 48899999996653
|
| >1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=96.58 E-value=0.00029 Score=78.24 Aligned_cols=57 Identities=12% Similarity=0.126 Sum_probs=40.5
Q ss_pred HHHHHHHhCCc----ccccccccCCcccccCccccchhhHH--HHHhcCCeEeeeeCCCccccHHH
Q 000979 47 TDYYLKVLGLD----VCADTMVGDEMIRGISGGQKKRVTTG--EMMVGPALALFMDEISTGLDSST 106 (1202)
Q Consensus 47 v~~il~~lgL~----~~~dT~VG~~~~~gLSGGQKqRvsIA--raLv~~P~ILlLDEpTSGLDs~s 106 (1202)
..+.++.+... ....+.++ .....+||||+||+++| +++ +|+||++||+|+|||+..
T Consensus 107 l~~~l~~l~~g~~t~~~~~v~~p-~y~~~~sgGq~~R~~~a~~~~~--~~~IlIlEG~~~~ld~~~ 169 (290)
T 1odf_A 107 LQEVLNTIFNNNEHPDQDTVVLP-KYDKSQFKGEGDRCPTGQKIKL--PVDIFILEGWFLGFNPIL 169 (290)
T ss_dssp HHHHHHHHTC------CCEEEEC-CEETTHHHHTCEECSSCEEEES--SCSEEEEEESSTTCCCCC
T ss_pred HHHHHHHhhccCccccCcceeec-cCccccCCccccccccccceEc--CCCEEEEeCccccCCccc
Confidence 44556665432 01223343 45578999999999998 665 899999999999999854
|
| >3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.53 E-value=0.01 Score=63.69 Aligned_cols=42 Identities=5% Similarity=0.096 Sum_probs=29.5
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh--CCCEEEEEec
Q 000979 772 ANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD--TGRTVVCTIH 813 (1202)
Q Consensus 772 ~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~--~g~tvi~~~H 813 (1202)
.+|+++++..+.+.++......+...++.+.. ...++|+.+|
T Consensus 111 ~~~~~~l~v~d~~~~~~~~~~~l~~~~~~~~~~~~~~~iiv~nK 154 (239)
T 3lxx_A 111 PGPHALLLVVPLGRYTEEEHKATEKILKMFGERARSFMILIFTR 154 (239)
T ss_dssp TCCSEEEEEEETTCCSSHHHHHHHHHHHHHHHHHGGGEEEEEEC
T ss_pred CCCcEEEEEeeCCCCCHHHHHHHHHHHHHhhhhccceEEEEEeC
Confidence 47899999999888888766666555543322 1358888888
|
| >1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A | Back alignment and structure |
|---|
Probab=96.46 E-value=0.032 Score=63.48 Aligned_cols=33 Identities=27% Similarity=0.367 Sum_probs=27.6
Q ss_pred eecce--EEEeCCeEEEEEcCCCCCHHHHHHHHhC
Q 000979 632 LNGVS--GAFRPGVLTALMGVSGAGKTTLMDVLAG 664 (1202)
Q Consensus 632 L~~vs--~~i~~Ge~~al~G~sGaGKSTLl~~l~g 664 (1202)
|+.+- +-+++|+++.|.||+|+|||||...++.
T Consensus 51 LD~~Lg~GGl~~G~ii~I~G~pGsGKTtLal~la~ 85 (356)
T 1u94_A 51 LDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIA 85 (356)
T ss_dssp HHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHH
T ss_pred HHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 55543 4689999999999999999999988764
|
| >4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A | Back alignment and structure |
|---|
Probab=96.45 E-value=0.0013 Score=70.48 Aligned_cols=35 Identities=26% Similarity=0.356 Sum_probs=25.7
Q ss_pred eecceEEEe---CCeEEEEEcCCCCCHHHHHHHHhCCC
Q 000979 632 LNGVSGAFR---PGVLTALMGVSGAGKTTLMDVLAGRK 666 (1202)
Q Consensus 632 L~~vs~~i~---~Ge~~al~G~sGaGKSTLl~~l~g~~ 666 (1202)
|.++|+++. +|.+++|.||+||||||+++.|+...
T Consensus 13 ~~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~l 50 (229)
T 4eaq_A 13 LGTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRL 50 (229)
T ss_dssp -------CCCCCCCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred ccCCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHHH
Confidence 666777666 99999999999999999999998754
|
| >2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A | Back alignment and structure |
|---|
Probab=96.43 E-value=0.0029 Score=64.19 Aligned_cols=27 Identities=37% Similarity=0.687 Sum_probs=23.2
Q ss_pred eCCeEEEEEcCCCCCHHHHHHHHhCCC
Q 000979 640 RPGVLTALMGVSGAGKTTLMDVLAGRK 666 (1202)
Q Consensus 640 ~~Ge~~al~G~sGaGKSTLl~~l~g~~ 666 (1202)
++|..++|+|++|+|||||++.|+|..
T Consensus 2 ~~~~ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 2 SHGMKVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 467899999999999999999999853
|
| >3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A* | Back alignment and structure |
|---|
Probab=96.40 E-value=0.0016 Score=68.30 Aligned_cols=29 Identities=28% Similarity=0.675 Sum_probs=24.0
Q ss_pred cceEEEeCCeEEEEEcCCCCCHHHHHHHHh
Q 000979 634 GVSGAFRPGVLTALMGVSGAGKTTLMDVLA 663 (1202)
Q Consensus 634 ~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~ 663 (1202)
+.++.+.+| +++|+|||||||||++++|.
T Consensus 16 ~~~i~f~~~-~~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 16 DTVVEFKEG-INLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp SEEEECCSE-EEEEECCTTSSHHHHHHHHH
T ss_pred ceEEEeCCC-eEEEEcCCCCCHHHHHHHHH
Confidence 445555564 99999999999999999985
|
| >2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A* | Back alignment and structure |
|---|
Probab=96.37 E-value=0.0042 Score=65.75 Aligned_cols=53 Identities=17% Similarity=0.230 Sum_probs=42.2
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEec---------CCCHHHHHhcceEEEEe
Q 000979 773 NPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIH---------QPSIDIFEAFDELFLMK 830 (1202)
Q Consensus 773 ~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H---------~~~~~~~~~~d~v~~l~ 830 (1202)
+|+++++||.-- |+. .+++.++.+++.|.+||++-| .++.++.+++|+|.-|.
T Consensus 89 ~~dvViIDEaQ~-l~~----~~ve~l~~L~~~gi~Vil~Gl~~df~~~~F~~~~~Ll~lAD~V~el~ 150 (223)
T 2b8t_A 89 ETKVIGIDEVQF-FDD----RICEVANILAENGFVVIISGLDKNFKGEPFGPIAKLFTYADKITKLT 150 (223)
T ss_dssp TCCEEEECSGGG-SCT----HHHHHHHHHHHTTCEEEEECCSBCTTSSBCTTHHHHHHHCSEEEECC
T ss_pred CCCEEEEecCcc-CcH----HHHHHHHHHHhCCCeEEEEeccccccCCcCCCcHHHHHHhheEeecc
Confidence 589999999964 654 355566777777999999999 56678889999999875
|
| >3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A | Back alignment and structure |
|---|
Probab=96.35 E-value=0.00071 Score=82.19 Aligned_cols=48 Identities=23% Similarity=0.356 Sum_probs=38.6
Q ss_pred EEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCc
Q 000979 630 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGY 680 (1202)
Q Consensus 630 ~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~ 680 (1202)
.+++++++++ +|+.++|+||||+|||||+++|++... +..|.+.++|.
T Consensus 97 ~~l~~~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~--~~~~~i~~~~~ 144 (543)
T 3m6a_A 97 LAVQKLTKSL-KGPILCLAGPPGVGKTSLAKSIAKSLG--RKFVRISLGGV 144 (543)
T ss_dssp HHHHHHSSSC-CSCEEEEESSSSSSHHHHHHHHHHHHT--CEEEEECCCC-
T ss_pred HHHHHhcccC-CCCEEEEECCCCCCHHHHHHHHHHhcC--CCeEEEEeccc
Confidence 3577788887 899999999999999999999998653 34677766664
|
| >2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A* | Back alignment and structure |
|---|
Probab=96.33 E-value=0.00086 Score=72.62 Aligned_cols=83 Identities=13% Similarity=0.078 Sum_probs=53.0
Q ss_pred CcccccccccCCcccccCccccchhhHHHHHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHhHhCCCEEEEEecCCChH
Q 000979 56 LDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPE 135 (1202)
Q Consensus 56 L~~~~dT~VG~~~~~gLSGGQKqRvsIAraLv~~P~ILlLDEpTSGLDs~sa~~vv~~L~~~a~~~~tTiIiaihQp~~s 135 (1202)
|.+..+..+ ..+|||||||+++ ++++.+|++++||||...+|.. +.+. .+.||+++.|. ...
T Consensus 106 l~~~~~~~~-----~~ls~g~~~r~~~-~~~~~~~~~lilDg~~~~~~~~--------l~~~---~~~~i~v~th~-~~~ 167 (245)
T 2jeo_A 106 IVEGKTVEV-----PTYDFVTHSRLPE-TTVVYPADVVLFEGILVFYSQE--------IRDM---FHLRLFVDTDS-DVR 167 (245)
T ss_dssp HHTTCCEEE-----CCEETTTTEECSS-CEEECCCSEEEEECTTTTTSHH--------HHTT---CSEEEEEECCH-HHH
T ss_pred HHCCCCeec-----ccccccccCccCc-eEEecCCCEEEEeCccccccHH--------HHHh---cCeEEEEECCH-HHH
Confidence 456666665 4799999999988 6888999999999998877752 2222 35678887663 223
Q ss_pred HHhh-hcceEEecCCcEEEEcCcchHHHHH
Q 000979 136 TYDL-FDDIILLSDGQIVYQGPRELVLEFF 164 (1202)
Q Consensus 136 ~~~~-fD~IvvL~~G~vvy~G~~~el~~~F 164 (1202)
..+. .+++ .+|+ +.+++.+.+
T Consensus 168 ~~r~~~r~~---~~G~-----~~e~~~~~~ 189 (245)
T 2jeo_A 168 LSRRVLRDV---RRGR-----DLEQILTQY 189 (245)
T ss_dssp HHHHHHHHT---C--------CHHHHHHHH
T ss_pred HHHHHHHHH---HcCC-----CHHHHHHHH
Confidence 3333 3334 5564 556665433
|
| >3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=96.30 E-value=0.0054 Score=67.76 Aligned_cols=28 Identities=32% Similarity=0.408 Sum_probs=23.9
Q ss_pred EeCCeEEEEEcCCCCCHHHHHHHHhCCC
Q 000979 639 FRPGVLTALMGVSGAGKTTLMDVLAGRK 666 (1202)
Q Consensus 639 i~~Ge~~al~G~sGaGKSTLl~~l~g~~ 666 (1202)
+.++.-+.|.||+|+|||||++.++...
T Consensus 48 ~~~~~~~ll~G~~GtGKT~la~~la~~~ 75 (285)
T 3h4m_A 48 IEPPKGILLYGPPGTGKTLLAKAVATET 75 (285)
T ss_dssp CCCCSEEEEESSSSSSHHHHHHHHHHHT
T ss_pred CCCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 3556679999999999999999998754
|
| >3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans} | Back alignment and structure |
|---|
Probab=96.28 E-value=0.00094 Score=80.59 Aligned_cols=43 Identities=37% Similarity=0.449 Sum_probs=33.0
Q ss_pred EEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEE-EEE-EcCcc
Q 000979 637 GAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITG-NIT-ISGYP 681 (1202)
Q Consensus 637 ~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G-~i~-~~g~~ 681 (1202)
..+++|++++|+|+||||||||+++|+|...+. .| .+. ++|.+
T Consensus 364 ~~~~~G~iI~LiG~sGSGKSTLar~La~~L~~~--~G~~i~~lDgD~ 408 (552)
T 3cr8_A 364 PRERQGFTVFFTGLSGAGKSTLARALAARLMEM--GGRCVTLLDGDI 408 (552)
T ss_dssp CGGGSCEEEEEEESSCHHHHHHHHHHHHHHHTT--CSSCEEEESSHH
T ss_pred cccccceEEEEECCCCChHHHHHHHHHHhhccc--CCceEEEECCcH
Confidence 357899999999999999999999999965421 23 453 66643
|
| >2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A* | Back alignment and structure |
|---|
Probab=96.27 E-value=0.0018 Score=66.19 Aligned_cols=27 Identities=41% Similarity=0.417 Sum_probs=24.1
Q ss_pred eCCeEEEEEcCCCCCHHHHHHHHhCCC
Q 000979 640 RPGVLTALMGVSGAGKTTLMDVLAGRK 666 (1202)
Q Consensus 640 ~~Ge~~al~G~sGaGKSTLl~~l~g~~ 666 (1202)
++|++++|+|++||||||+.+.|++..
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l 29 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYL 29 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 479999999999999999999998753
|
| >1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B* | Back alignment and structure |
|---|
Probab=96.24 E-value=0.0035 Score=64.77 Aligned_cols=34 Identities=29% Similarity=0.436 Sum_probs=21.0
Q ss_pred EeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCC
Q 000979 631 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGR 665 (1202)
Q Consensus 631 iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~ 665 (1202)
+++++++..++. .++++|++|+|||||++.+.+.
T Consensus 13 ~l~~~~~~~~~~-ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 13 VLASLGLWNKHG-KLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp -----------C-EEEEEESTTSSHHHHHHHHHHS
T ss_pred HHHHhhccCCcc-EEEEECCCCCCHHHHHHHHhcC
Confidence 688999998887 6799999999999999999874
|
| >2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10 | Back alignment and structure |
|---|
Probab=96.24 E-value=0.00085 Score=76.53 Aligned_cols=38 Identities=21% Similarity=0.301 Sum_probs=34.2
Q ss_pred eEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCC
Q 000979 629 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRK 666 (1202)
Q Consensus 629 ~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~ 666 (1202)
..+++++++.+++|.+++|+|++|+|||||++.|++..
T Consensus 43 ~~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~ 80 (341)
T 2p67_A 43 TQLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLL 80 (341)
T ss_dssp HHHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred HHHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHH
Confidence 34688999999999999999999999999999998753
|
| >3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1} | Back alignment and structure |
|---|
Probab=96.21 E-value=0.0077 Score=70.97 Aligned_cols=33 Identities=15% Similarity=0.186 Sum_probs=28.5
Q ss_pred eecceEEEeCCeEEEEEcCCCCCHHHHHHHHhC
Q 000979 632 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG 664 (1202)
Q Consensus 632 L~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g 664 (1202)
|+.+..-+++|+++.|.|++|+|||||.--++.
T Consensus 187 LD~~lgGl~~G~liiIaG~pG~GKTtlal~ia~ 219 (444)
T 3bgw_A 187 LDRMTYGYKRRNFVLIAARPSMGKTAFALKQAK 219 (444)
T ss_dssp HHHHHSSBCSSCEEEEEECSSSSHHHHHHHHHH
T ss_pred HHhhcCCCCCCcEEEEEeCCCCChHHHHHHHHH
Confidence 666666789999999999999999999877764
|
| >1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A* | Back alignment and structure |
|---|
Probab=96.19 E-value=0.002 Score=68.69 Aligned_cols=56 Identities=21% Similarity=0.081 Sum_probs=36.1
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCCCCC-ceEEEEEEE--------cCccCCc----ccccceEEEeecC
Q 000979 642 GVLTALMGVSGAGKTTLMDVLAGRKTG-GYITGNITI--------SGYPKKQ----ETFARISGYCEQN 697 (1202)
Q Consensus 642 Ge~~al~G~sGaGKSTLl~~l~g~~~~-~~~~G~i~~--------~g~~~~~----~~~~~~~~~v~q~ 697 (1202)
+.+++|+|||||||||+.++|++.... -...|++.. +|.+... ...++.+++++|+
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 73 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYRVLALAALHHHVDVASEDALVPLASHLDVRFVS 73 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHTCCEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcceeehhhHHHHHcCCCccCHHHHHHHHHhCceeeec
Confidence 568999999999999999999975311 123455554 4544321 1233456666664
|
| >1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.19 E-value=0.0021 Score=66.17 Aligned_cols=32 Identities=25% Similarity=0.390 Sum_probs=26.2
Q ss_pred cceEEEeCCeEEEEEcCCCCCHHHHHHHHhCC
Q 000979 634 GVSGAFRPGVLTALMGVSGAGKTTLMDVLAGR 665 (1202)
Q Consensus 634 ~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~ 665 (1202)
++|+...+|..++|+|++||||||+.+.|+..
T Consensus 2 ~~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 2 PGSMEQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp ----CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcCcCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 57888889999999999999999999999864
|
| >1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A* | Back alignment and structure |
|---|
Probab=96.19 E-value=0.0099 Score=67.08 Aligned_cols=45 Identities=4% Similarity=0.080 Sum_probs=34.3
Q ss_pred hhCCCEEEEeCCCC-CCCHHHHHHHHHHHHHHHhCCCEEEEEecCC
Q 000979 771 VANPSIIFMDEPTS-GLDARAAAIVMRTVRNTVDTGRTVVCTIHQP 815 (1202)
Q Consensus 771 ~~~p~illlDEPts-gLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~ 815 (1202)
..+|++|++||+.. .-|......+...+..+.+.|..+|++++.+
T Consensus 96 ~~~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~ 141 (324)
T 1l8q_A 96 YKSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRH 141 (324)
T ss_dssp HHTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred hcCCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCC
Confidence 35799999999865 2344677888888888777777788887754
|
| >3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B | Back alignment and structure |
|---|
Probab=96.15 E-value=0.00054 Score=84.27 Aligned_cols=88 Identities=13% Similarity=0.090 Sum_probs=61.5
Q ss_pred cccchhhHHHHHhcCCeEeeeeCC------CccccHHHHHHHHHHHHHHhHhCCCE-EEEEecCCC------hHHHhhhc
Q 000979 75 GQKKRVTTGEMMVGPALALFMDEI------STGLDSSTTFQIVNCLRQNIHINSGT-AVISLLQPA------PETYDLFD 141 (1202)
Q Consensus 75 GQKqRvsIAraLv~~P~ILlLDEp------TSGLDs~sa~~vv~~L~~~a~~~~tT-iIiaihQp~------~s~~~~fD 141 (1202)
..++++.++.+....|+++++||| |+|||+....++.+.+++.....++. ++++.|--. ..+.+..|
T Consensus 132 ~s~~~i~l~i~~~~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a~~~~l~la~~v~ 211 (608)
T 3szr_A 132 ISHELITLEISSRDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIATTEALSMAQEVD 211 (608)
T ss_dssp CCSCCEEEEEEESSSCCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTTTCHHHHHHHHHC
T ss_pred cchHHHHHHhcCCCCCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhccHHHHHHHHHHh
Confidence 445677777777788999999999 99999999999999998865433333 333333211 23334432
Q ss_pred -----ceEEecCCcEEEEcCcchHHH
Q 000979 142 -----DIILLSDGQIVYQGPRELVLE 162 (1202)
Q Consensus 142 -----~IvvL~~G~vvy~G~~~el~~ 162 (1202)
.|+|+.++..+..|+.+++.+
T Consensus 212 ~~g~rtI~VlTK~Dlv~~g~~~~~~~ 237 (608)
T 3szr_A 212 PEGDRTIGILTKPDLVDKGTEDKVVD 237 (608)
T ss_dssp SSCCSEEEEEECGGGSSSSSTTCCCC
T ss_pred hcCCceEEEecchhhcCcccHHHHHH
Confidence 478999999999998766554
|
| >1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1 | Back alignment and structure |
|---|
Probab=96.15 E-value=0.0032 Score=74.42 Aligned_cols=38 Identities=24% Similarity=0.468 Sum_probs=29.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCC------Cc----eEEEEEEEcCcc
Q 000979 644 LTALMGVSGAGKTTLMDVLAGRKT------GG----YITGNITISGYP 681 (1202)
Q Consensus 644 ~~al~G~sGaGKSTLl~~l~g~~~------~~----~~~G~i~~~g~~ 681 (1202)
.++|+|+||+|||||+|.|+|... ++ +..|.+.++|.+
T Consensus 182 kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~ 229 (439)
T 1mky_A 182 KVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRK 229 (439)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEE
T ss_pred eEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEE
Confidence 689999999999999999999632 11 335788888864
|
| >2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax} | Back alignment and structure |
|---|
Probab=96.09 E-value=0.0022 Score=67.16 Aligned_cols=29 Identities=24% Similarity=0.217 Sum_probs=25.1
Q ss_pred EEeCCeEEEEEcCCCCCHHHHHHHHhCCC
Q 000979 638 AFRPGVLTALMGVSGAGKTTLMDVLAGRK 666 (1202)
Q Consensus 638 ~i~~Ge~~al~G~sGaGKSTLl~~l~g~~ 666 (1202)
...+|.+++|+||||||||||.+.|+...
T Consensus 8 ~~~~~~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 8 HMARIPPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp -CCCCCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred ccccCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 34688999999999999999999998654
|
| >1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=95.99 E-value=0.0074 Score=64.79 Aligned_cols=79 Identities=11% Similarity=0.075 Sum_probs=49.5
Q ss_pred cCccccch-hhHHHHHh--cCCeEeeeeCCCccccHH-------H-----HHHHHHHHHHHhHhCCCEEEEEecCCChH-
Q 000979 72 ISGGQKKR-VTTGEMMV--GPALALFMDEISTGLDSS-------T-----TFQIVNCLRQNIHINSGTAVISLLQPAPE- 135 (1202)
Q Consensus 72 LSGGQKqR-vsIAraLv--~~P~ILlLDEpTSGLDs~-------s-----a~~vv~~L~~~a~~~~tTiIiaihQp~~s- 135 (1202)
.++.+..+ +.-.++++ .+|+++++||||+.+|+. + ..++++.|++++++.+.||+++.|..+..
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~lliiD~~~~~~~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~~~tvi~~~h~~~~~~ 178 (243)
T 1n0w_A 99 FNTDHQTQLLYQASAMMVESRYALLIVDSATALYRTDYSGRGELSARQMHLARFLRMLLRLADEFGVAVVITNQVVAQVD 178 (243)
T ss_dssp CSHHHHHHHHHHHHHHHHHSCEEEEEEETSSGGGC-------CHHHHHHHHHHHHHHHHHHHHHHCCEEEEEC-------
T ss_pred CCHHHHHHHHHHHHHHHhcCCceEEEEeCchHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeeeecCC
Confidence 44444332 33344444 489999999999999985 3 34577778887776788988886643321
Q ss_pred -----------------HHhhhcceEEecCCc
Q 000979 136 -----------------TYDLFDDIILLSDGQ 150 (1202)
Q Consensus 136 -----------------~~~~fD~IvvL~~G~ 150 (1202)
.-..+|++++|.+|+
T Consensus 179 ~~~~~~~~~~~~~g~~~~~~~~d~vi~l~~~~ 210 (243)
T 1n0w_A 179 GAAMFAADPKKPIGGNIIAHASTTRLYLRKGR 210 (243)
T ss_dssp ------------------CCTTCEEEEEEECS
T ss_pred CccccCCCcccCCccChhhhcCcEEEEEEEcC
Confidence 222789999998653
|
| >1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A* | Back alignment and structure |
|---|
Probab=95.92 E-value=0.0013 Score=68.47 Aligned_cols=35 Identities=29% Similarity=0.407 Sum_probs=30.8
Q ss_pred EEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCC
Q 000979 630 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGR 665 (1202)
Q Consensus 630 ~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~ 665 (1202)
.+++++|+..++++ ++++|++|+|||||++.+.+.
T Consensus 14 ~~l~~~~~~~~~~k-i~lvG~~~vGKSsLi~~l~~~ 48 (198)
T 1f6b_A 14 SVLQFLGLYKKTGK-LVFLGLDNAGKTTLLHMLKDD 48 (198)
T ss_dssp HHHHHHTCTTCCEE-EEEEEETTSSHHHHHHHHSCC
T ss_pred HHHHHhhccCCCcE-EEEECCCCCCHHHHHHHHhcC
Confidence 46889999888885 689999999999999999874
|
| >2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.88 E-value=0.00089 Score=76.92 Aligned_cols=32 Identities=28% Similarity=0.374 Sum_probs=27.3
Q ss_pred eEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCC
Q 000979 629 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRK 666 (1202)
Q Consensus 629 ~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~ 666 (1202)
+.++++++++| +|+|+||+|||||++.|.|..
T Consensus 30 k~~~~~~~~~I------~vvG~~g~GKSTLln~L~~~~ 61 (361)
T 2qag_A 30 KSVKKGFEFTL------MVVGESGLGKSTLINSLFLTD 61 (361)
T ss_dssp HHHHHCCEECE------EECCCTTSCHHHHHHHHTTCC
T ss_pred eeecCCCCEEE------EEEcCCCCCHHHHHHHHhCCC
Confidence 34678888876 999999999999999998753
|
| >3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A* | Back alignment and structure |
|---|
Probab=95.87 E-value=0.0059 Score=62.38 Aligned_cols=50 Identities=14% Similarity=0.082 Sum_probs=39.9
Q ss_pred HHhcCCeEeeeeCCCc-cccHHHHHHHHHHHHHHhHhCCCEEEEEecCCChH
Q 000979 85 MMVGPALALFMDEIST-GLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPE 135 (1202)
Q Consensus 85 aLv~~P~ILlLDEpTS-GLDs~sa~~vv~~L~~~a~~~~tTiIiaihQp~~s 135 (1202)
..+.+|++|+||||++ ++|......+.+.+.... ..++++|++.|++..+
T Consensus 96 ~~~~~~~llilDE~~~~~~~~~~~~~l~~ll~~~~-~~~~~ii~tsn~~~~~ 146 (180)
T 3ec2_A 96 KTVLNSPVLVLDDLGSERLSDWQRELISYIITYRY-NNLKSTIITTNYSLQR 146 (180)
T ss_dssp HHHHTCSEEEEETCSSSCCCHHHHHHHHHHHHHHH-HTTCEEEEECCCCSCC
T ss_pred HHhcCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHH-HcCCCEEEEcCCChhH
Confidence 4456899999999996 899988877777777654 4678999998887654
|
| >3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.86 E-value=0.031 Score=63.90 Aligned_cols=27 Identities=30% Similarity=0.410 Sum_probs=23.1
Q ss_pred eCCeEEEEEcCCCCCHHHHHHHHhCCC
Q 000979 640 RPGVLTALMGVSGAGKTTLMDVLAGRK 666 (1202)
Q Consensus 640 ~~Ge~~al~G~sGaGKSTLl~~l~g~~ 666 (1202)
++..-+.|.||+|+|||||.+.|+...
T Consensus 115 ~~~~~vLl~GppGtGKT~la~aia~~~ 141 (357)
T 3d8b_A 115 GPPKGILLFGPPGTGKTLIGKCIASQS 141 (357)
T ss_dssp SCCSEEEEESSTTSSHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHc
Confidence 455679999999999999999998653
|
| >2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A* | Back alignment and structure |
|---|
Probab=95.76 E-value=0.00012 Score=84.60 Aligned_cols=70 Identities=14% Similarity=0.073 Sum_probs=51.1
Q ss_pred CcccccccccCCcccccCccccchhhHHHHHhcCCeE--eeeeCCCccccHH----H-H---HHHHHHHHHHhHhCCCEE
Q 000979 56 LDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALA--LFMDEISTGLDSS----T-T---FQIVNCLRQNIHINSGTA 125 (1202)
Q Consensus 56 L~~~~dT~VG~~~~~gLSGGQKqRvsIAraLv~~P~I--LlLDEpTSGLDs~----s-a---~~vv~~L~~~a~~~~tTi 125 (1202)
|.++.++.|+ .+...+||| ||++|+|+++.+|+| +++||+||+||+. + + ..+.+.+.+...++.||+
T Consensus 269 l~~~l~~vv~-qrl~~~~~G--~R~~i~e~l~~~~~i~~li~d~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~g~t~~ 345 (372)
T 2ewv_A 269 LSFILQGIIS-QRLLPKIGG--GRVLAYELLIPNTAIRNLIRENKLQQVYSLMQSGQAETGMQTMNQTLYKLYKQGLITL 345 (372)
T ss_dssp HHHSCCEEEE-EEEEECSSS--SEEEEEEECCCCSHHHHHHHHTCHHHHHHHCC-------CBCSHHHHHHTTTTSSSCT
T ss_pred HHHhhhEEEE-EEeEecCCC--CEEEEEEEeeCCHHHHHHHHcCCHHHHHHHHHHhHHhcCCccHHHHHHHHHHCCCCCH
Confidence 4567888887 333447899 899999999999999 9999999999975 2 1 234555555555566666
Q ss_pred EEE
Q 000979 126 VIS 128 (1202)
Q Consensus 126 Iia 128 (1202)
.++
T Consensus 346 ~~a 348 (372)
T 2ewv_A 346 EDA 348 (372)
T ss_dssp TTT
T ss_pred HHH
Confidence 555
|
| >2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A* | Back alignment and structure |
|---|
Probab=95.73 E-value=0.029 Score=63.15 Aligned_cols=33 Identities=33% Similarity=0.503 Sum_probs=27.6
Q ss_pred eecce-EEEeCCeEEEEEcCCCCCHHHHHHHHhC
Q 000979 632 LNGVS-GAFRPGVLTALMGVSGAGKTTLMDVLAG 664 (1202)
Q Consensus 632 L~~vs-~~i~~Ge~~al~G~sGaGKSTLl~~l~g 664 (1202)
|+.+- +-+++|+++.|.||+|+|||||...++.
T Consensus 87 LD~~l~GGl~~g~i~~i~G~~gsGKT~la~~la~ 120 (322)
T 2i1q_A 87 LDSVLGGGLESQSVTEFAGVFGSGKTQIMHQSCV 120 (322)
T ss_dssp HHHHTTSSEETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred HHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 44433 5789999999999999999999988774
|
| >2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.70 E-value=0.0044 Score=70.75 Aligned_cols=27 Identities=26% Similarity=0.372 Sum_probs=24.3
Q ss_pred eCCeEEEEEcCCCCCHHHHHHHHhCCC
Q 000979 640 RPGVLTALMGVSGAGKTTLMDVLAGRK 666 (1202)
Q Consensus 640 ~~Ge~~al~G~sGaGKSTLl~~l~g~~ 666 (1202)
+++.+++|+|++|||||||+|.|+|..
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~~~ 98 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGKML 98 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 467899999999999999999999853
|
| >2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A* | Back alignment and structure |
|---|
Probab=95.68 E-value=0.0014 Score=73.74 Aligned_cols=35 Identities=23% Similarity=0.366 Sum_probs=32.3
Q ss_pred EeecceEEEeCCeE--EEEEcCCCCCHHHHHHHHhCC
Q 000979 631 LLNGVSGAFRPGVL--TALMGVSGAGKTTLMDVLAGR 665 (1202)
Q Consensus 631 iL~~vs~~i~~Ge~--~al~G~sGaGKSTLl~~l~g~ 665 (1202)
+++++++.+++|+. ++|+|++||||||+.++|++.
T Consensus 11 il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~ 47 (359)
T 2ga8_A 11 VLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQI 47 (359)
T ss_dssp HHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHH
Confidence 67888889999998 999999999999999999984
|
| >2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=95.68 E-value=0.004 Score=65.04 Aligned_cols=21 Identities=29% Similarity=0.458 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhC
Q 000979 644 LTALMGVSGAGKTTLMDVLAG 664 (1202)
Q Consensus 644 ~~al~G~sGaGKSTLl~~l~g 664 (1202)
+++|+|+|||||||+.+.|++
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 689999999999999999998
|
| >2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=95.64 E-value=0.015 Score=67.03 Aligned_cols=26 Identities=27% Similarity=0.441 Sum_probs=22.8
Q ss_pred eCCeEEEEEcCCCCCHHHHHHHHhCC
Q 000979 640 RPGVLTALMGVSGAGKTTLMDVLAGR 665 (1202)
Q Consensus 640 ~~Ge~~al~G~sGaGKSTLl~~l~g~ 665 (1202)
..+..+.|.||+|+|||||++.++..
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~ 67 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRR 67 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHH
Confidence 45678999999999999999999864
|
| >2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=95.55 E-value=0.0005 Score=71.15 Aligned_cols=82 Identities=6% Similarity=-0.027 Sum_probs=58.3
Q ss_pred CccccchhhHHH------HHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHhHhCCCEEEEEecCCChHHHhhhcceEEe
Q 000979 73 SGGQKKRVTTGE------MMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILL 146 (1202)
Q Consensus 73 SGGQKqRvsIAr------aLv~~P~ILlLDEpTSGLDs~sa~~vv~~L~~~a~~~~tTiIiaihQp~~s~~~~fD~IvvL 146 (1202)
|+|++||+.++. ++..+|+...+|+ +||...... ++.++... ..+.++|.+.|.--.++-+.+|+|+
T Consensus 96 s~g~~~~~~~i~L~~~~e~l~~R~~~r~~d~---~ld~~~~~~-~~~~~~~~-~~~~~ii~tsh~~~~~~e~~~~~i~-- 168 (189)
T 2bdt_A 96 AKVDDVEIRFIILWTNREELLRRDALRKKDE---QMGERCLEL-VEEFESKG-IDERYFYNTSHLQPTNLNDIVKNLK-- 168 (189)
T ss_dssp HHCSSEEEEEEEEECCHHHHHHHTTTSCC-------CGGGGHH-HHHHHHTT-CCTTSEEECSSSCGGGHHHHHHHHH--
T ss_pred hcccCCCeEEEEEeCCHHHHHHHHHhccccc---cCCHHHHHH-HHHHhhcC-CCccEEEeCCCCChhhHHHHHHHHh--
Confidence 999999999888 9999999888894 899977777 77777654 3467888876651357788899999
Q ss_pred cCCcEEEEcCcchHH
Q 000979 147 SDGQIVYQGPRELVL 161 (1202)
Q Consensus 147 ~~G~vvy~G~~~el~ 161 (1202)
.+|+++.+|+.+-+.
T Consensus 169 ~~g~~~~~~~~~~~~ 183 (189)
T 2bdt_A 169 TNPRFIFCMAGDPLE 183 (189)
T ss_dssp HCGGGSCC-------
T ss_pred hCCcEEEeecCCchh
Confidence 999999999987664
|
| >2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=95.48 E-value=0.0054 Score=63.05 Aligned_cols=29 Identities=34% Similarity=0.532 Sum_probs=25.5
Q ss_pred EEeCCeEEEEEcCCCCCHHHHHHHHhCCC
Q 000979 638 AFRPGVLTALMGVSGAGKTTLMDVLAGRK 666 (1202)
Q Consensus 638 ~i~~Ge~~al~G~sGaGKSTLl~~l~g~~ 666 (1202)
..++|.++.|+|++||||||+.+.|++..
T Consensus 9 ~~~~~~~i~l~G~~GsGKsT~~~~L~~~l 37 (186)
T 2yvu_A 9 CIEKGIVVWLTGLPGSGKTTIATRLADLL 37 (186)
T ss_dssp CCSCCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ccCCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 44678999999999999999999998753
|
| >1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1 | Back alignment and structure |
|---|
Probab=95.45 E-value=0.0015 Score=75.32 Aligned_cols=87 Identities=8% Similarity=-0.089 Sum_probs=60.8
Q ss_pred ccCccccchhhHHHHHh-cCCeEeeeeC---CC------ccccHHHHHHHHHHHHHHhHhCCCEEEEEecCCChHHHhhh
Q 000979 71 GISGGQKKRVTTGEMMV-GPALALFMDE---IS------TGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLF 140 (1202)
Q Consensus 71 gLSGGQKqRvsIAraLv-~~P~ILlLDE---pT------SGLDs~sa~~vv~~L~~~a~~~~tTiIiaihQp~~s~~~~f 140 (1202)
.+|+|++||..+++++. .+|++++||| |+ ++||......+.+.++++.++.+.++++.. +| .+.-+.+
T Consensus 258 ~~~~~~~~~~~i~~~~~~~~~~lllLdE~~~p~~~~g~~~sld~~~r~~l~~~l~~l~~~~~~~ilild-e~-~~~~r~~ 335 (365)
T 1lw7_A 258 CIQYEGKAHPFLDSMIKEYPFDVTILLKNNTEWVDDGLRSLGSQKQRQQFQQLLKKLLDKYKVPYIEIE-SP-SYLDRYN 335 (365)
T ss_dssp HHHHHSCCCHHHHHHHHHSCCSEEEEEECCCC-----------CCSHHHHHHHHHHHHHGGGCCCEEEE-CS-SHHHHHH
T ss_pred HHHHcCCCCHHHHHHHhhcCCCEEEECCCCCCcccCCCcCCccHHHHHHHHHHHHHHHHHcCCCEEEeC-CC-CHHHHHH
Confidence 56778889988888775 5899999999 54 689999999999999887654466666654 34 4677788
Q ss_pred cceEEecCCcEEEEcCcchHH
Q 000979 141 DDIILLSDGQIVYQGPRELVL 161 (1202)
Q Consensus 141 D~IvvL~~G~vvy~G~~~el~ 161 (1202)
|.+.++++ ++..|+.+||.
T Consensus 336 ~~i~~i~~--~l~~~~~~~~~ 354 (365)
T 1lw7_A 336 QVKAVIEK--VLNEEEISELQ 354 (365)
T ss_dssp HHHHHHHH--HTSCCCCSSCC
T ss_pred HHHHHHHH--HhcccchhHhh
Confidence 88887763 44555555553
|
| >1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A | Back alignment and structure |
|---|
Probab=95.44 E-value=0.0063 Score=61.84 Aligned_cols=37 Identities=35% Similarity=0.352 Sum_probs=26.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCC-CceEEEEEEEcC
Q 000979 643 VLTALMGVSGAGKTTLMDVLAGRKT-GGYITGNITISG 679 (1202)
Q Consensus 643 e~~al~G~sGaGKSTLl~~l~g~~~-~~~~~G~i~~~g 679 (1202)
.+++|+|+||||||||++.|.+... .+...|.+..++
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~~~ 44 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTH 44 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEeeCC
Confidence 5899999999999999999987421 122235555544
|
| >2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=95.40 E-value=0.014 Score=59.67 Aligned_cols=22 Identities=36% Similarity=0.650 Sum_probs=20.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhCC
Q 000979 644 LTALMGVSGAGKTTLMDVLAGR 665 (1202)
Q Consensus 644 ~~al~G~sGaGKSTLl~~l~g~ 665 (1202)
.++|+|++|+|||||++.|+|.
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999985
|
| >2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.39 E-value=0.039 Score=59.84 Aligned_cols=26 Identities=31% Similarity=0.387 Sum_probs=21.9
Q ss_pred eCCeEEEEEcCCCCCHHHHHHHHhCC
Q 000979 640 RPGVLTALMGVSGAGKTTLMDVLAGR 665 (1202)
Q Consensus 640 ~~Ge~~al~G~sGaGKSTLl~~l~g~ 665 (1202)
++..-+.|.||+|+|||||.+.++..
T Consensus 37 ~~~~~vll~G~~GtGKT~la~~la~~ 62 (262)
T 2qz4_A 37 KVPKGALLLGPPGCGKTLLAKAVATE 62 (262)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHH
Confidence 34456889999999999999999864
|
| >1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A* | Back alignment and structure |
|---|
Probab=95.36 E-value=0.0062 Score=64.12 Aligned_cols=29 Identities=31% Similarity=0.343 Sum_probs=26.0
Q ss_pred EEeCCeEEEEEcCCCCCHHHHHHHHhCCC
Q 000979 638 AFRPGVLTALMGVSGAGKTTLMDVLAGRK 666 (1202)
Q Consensus 638 ~i~~Ge~~al~G~sGaGKSTLl~~l~g~~ 666 (1202)
.+++|.+++|+|++||||||+.+.|++..
T Consensus 21 ~~~~~~~i~~~G~~GsGKsT~~~~l~~~l 49 (211)
T 1m7g_A 21 RNQRGLTIWLTGLSASGKSTLAVELEHQL 49 (211)
T ss_dssp HTSSCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred cCCCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 45789999999999999999999998754
|
| >2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A* | Back alignment and structure |
|---|
Probab=95.34 E-value=0.0079 Score=60.35 Aligned_cols=23 Identities=35% Similarity=0.634 Sum_probs=21.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCC
Q 000979 644 LTALMGVSGAGKTTLMDVLAGRK 666 (1202)
Q Consensus 644 ~~al~G~sGaGKSTLl~~l~g~~ 666 (1202)
.++|+|++|+|||||++.++|..
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~~ 27 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGEN 27 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999854
|
| >3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=95.34 E-value=0.0075 Score=61.85 Aligned_cols=25 Identities=36% Similarity=0.438 Sum_probs=22.4
Q ss_pred eCCeEEEEEcCCCCCHHHHHHHHhC
Q 000979 640 RPGVLTALMGVSGAGKTTLMDVLAG 664 (1202)
Q Consensus 640 ~~Ge~~al~G~sGaGKSTLl~~l~g 664 (1202)
.+|.+++|+|++||||||+.+.|+.
T Consensus 2 ~~g~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 2 DVGQAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4688999999999999999999974
|
| >1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.29 E-value=0.13 Score=57.83 Aligned_cols=27 Identities=30% Similarity=0.367 Sum_probs=23.3
Q ss_pred eCCeEEEEEcCCCCCHHHHHHHHhCCC
Q 000979 640 RPGVLTALMGVSGAGKTTLMDVLAGRK 666 (1202)
Q Consensus 640 ~~Ge~~al~G~sGaGKSTLl~~l~g~~ 666 (1202)
.|..-+.|.||+|+|||||.+.++...
T Consensus 43 ~~~~~iLL~GppGtGKT~la~ala~~~ 69 (322)
T 1xwi_A 43 TPWRGILLFGPPGTGKSYLAKAVATEA 69 (322)
T ss_dssp CCCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCccHHHHHHHHHHHc
Confidence 455678999999999999999998754
|
| >3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=95.26 E-value=0.0065 Score=63.38 Aligned_cols=24 Identities=33% Similarity=0.504 Sum_probs=21.7
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCC
Q 000979 642 GVLTALMGVSGAGKTTLMDVLAGR 665 (1202)
Q Consensus 642 Ge~~al~G~sGaGKSTLl~~l~g~ 665 (1202)
..+++|+|++||||||+.+.|++.
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~ 41 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEA 41 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 458999999999999999999865
|
| >1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2 | Back alignment and structure |
|---|
Probab=95.21 E-value=0.12 Score=62.08 Aligned_cols=33 Identities=21% Similarity=0.128 Sum_probs=27.6
Q ss_pred eecceEEEeCCeEEEEEcCCCCCHHHHHHHHhC
Q 000979 632 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG 664 (1202)
Q Consensus 632 L~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g 664 (1202)
|+.+..-+++|+++.|.|++|+|||||+--++-
T Consensus 232 LD~~lgGl~~G~l~li~G~pG~GKT~lal~~a~ 264 (503)
T 1q57_A 232 INDKTLGARGGEVIMVTSGSGMVMSTFVRQQAL 264 (503)
T ss_dssp HHHHHCCCCTTCEEEEEESSCHHHHHHHHHHHH
T ss_pred hhHhhcccCCCeEEEEeecCCCCchHHHHHHHH
Confidence 555555689999999999999999999877653
|
| >1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=95.10 E-value=0.0024 Score=72.86 Aligned_cols=38 Identities=26% Similarity=0.306 Sum_probs=33.3
Q ss_pred eEEeecceEEEeCCeE--EEEEcCCCCCHHHHHHHHhCCC
Q 000979 629 LVLLNGVSGAFRPGVL--TALMGVSGAGKTTLMDVLAGRK 666 (1202)
Q Consensus 629 ~~iL~~vs~~i~~Ge~--~al~G~sGaGKSTLl~~l~g~~ 666 (1202)
..+++.++..++.|++ +.+.||+|+||||+++++++..
T Consensus 31 ~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l 70 (340)
T 1sxj_C 31 NEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREI 70 (340)
T ss_dssp HHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 3467788888899998 9999999999999999999853
|
| >1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1 | Back alignment and structure |
|---|
Probab=95.06 E-value=0.14 Score=58.36 Aligned_cols=28 Identities=32% Similarity=0.504 Sum_probs=24.9
Q ss_pred EEEeCCeEEEEEcCCCCCHHHHHHHHhC
Q 000979 637 GAFRPGVLTALMGVSGAGKTTLMDVLAG 664 (1202)
Q Consensus 637 ~~i~~Ge~~al~G~sGaGKSTLl~~l~g 664 (1202)
+-+++|+++.|.||+|+|||||...++.
T Consensus 69 GGl~~G~li~I~G~pGsGKTtlal~la~ 96 (366)
T 1xp8_A 69 GGIPRGRITEIYGPESGGKTTLALAIVA 96 (366)
T ss_dssp SSEETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred CCccCCcEEEEEcCCCCChHHHHHHHHH
Confidence 3689999999999999999999877753
|
| >1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A* | Back alignment and structure |
|---|
Probab=95.02 E-value=0.012 Score=59.93 Aligned_cols=25 Identities=28% Similarity=0.306 Sum_probs=22.5
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCCC
Q 000979 642 GVLTALMGVSGAGKTTLMDVLAGRK 666 (1202)
Q Consensus 642 Ge~~al~G~sGaGKSTLl~~l~g~~ 666 (1202)
|.++.|.|++||||||+.+.|+...
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l 27 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVL 27 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 5689999999999999999998754
|
| >3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A* | Back alignment and structure |
|---|
Probab=95.00 E-value=0.011 Score=59.63 Aligned_cols=22 Identities=27% Similarity=0.212 Sum_probs=20.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhCC
Q 000979 644 LTALMGVSGAGKTTLMDVLAGR 665 (1202)
Q Consensus 644 ~~al~G~sGaGKSTLl~~l~g~ 665 (1202)
+++|.|++||||||+.+.|+..
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~ 24 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKE 24 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999864
|
| >3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A* | Back alignment and structure |
|---|
Probab=94.94 E-value=0.011 Score=62.83 Aligned_cols=23 Identities=30% Similarity=0.469 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCC
Q 000979 643 VLTALMGVSGAGKTTLMDVLAGR 665 (1202)
Q Consensus 643 e~~al~G~sGaGKSTLl~~l~g~ 665 (1202)
-+++|.||+||||||+.+.|+..
T Consensus 10 ~~i~i~G~~GsGKsTla~~la~~ 32 (233)
T 3r20_A 10 LVVAVDGPAGTGKSSVSRGLARA 32 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 48999999999999999999854
|
| >1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=94.93 E-value=0.011 Score=63.41 Aligned_cols=28 Identities=21% Similarity=0.309 Sum_probs=23.9
Q ss_pred EEeCCeEEEEEcCCCCCHHHHHHHHhCC
Q 000979 638 AFRPGVLTALMGVSGAGKTTLMDVLAGR 665 (1202)
Q Consensus 638 ~i~~Ge~~al~G~sGaGKSTLl~~l~g~ 665 (1202)
.-.+|.+++|+|++||||||+.+.|++.
T Consensus 12 ~~~~~~~i~i~G~~gsGKst~~~~l~~~ 39 (236)
T 1q3t_A 12 DKMKTIQIAIDGPASSGKSTVAKIIAKD 39 (236)
T ss_dssp --CCCCEEEEECSSCSSHHHHHHHHHHH
T ss_pred cccCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 3567889999999999999999999864
|
| >2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.90 E-value=0.0098 Score=68.30 Aligned_cols=45 Identities=18% Similarity=0.359 Sum_probs=32.4
Q ss_pred eEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCC---------CceEEEEEEEcCc
Q 000979 636 SGAFRPGVLTALMGVSGAGKTTLMDVLAGRKT---------GGYITGNITISGY 680 (1202)
Q Consensus 636 s~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~---------~~~~~G~i~~~g~ 680 (1202)
-..+..|..++|+|+||+|||||+|.|+|... -.+..|.+.+.+.
T Consensus 16 ~g~i~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~ 69 (396)
T 2ohf_A 16 IGRFGTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDE 69 (396)
T ss_dssp CCCSSSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCH
T ss_pred HhhccCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCc
Confidence 34667888999999999999999999998621 1133566666553
|
| >2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B* | Back alignment and structure |
|---|
Probab=94.87 E-value=0.012 Score=60.20 Aligned_cols=22 Identities=36% Similarity=0.560 Sum_probs=20.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhCC
Q 000979 644 LTALMGVSGAGKTTLMDVLAGR 665 (1202)
Q Consensus 644 ~~al~G~sGaGKSTLl~~l~g~ 665 (1202)
.++|+|++|+|||||++.++|.
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4799999999999999999985
|
| >3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4} | Back alignment and structure |
|---|
Probab=94.83 E-value=0.09 Score=58.00 Aligned_cols=25 Identities=28% Similarity=0.357 Sum_probs=21.2
Q ss_pred EEEeCCeEEEEEcCCCCCHHHHHHHH
Q 000979 637 GAFRPGVLTALMGVSGAGKTTLMDVL 662 (1202)
Q Consensus 637 ~~i~~Ge~~al~G~sGaGKSTLl~~l 662 (1202)
+-+++| ++.|.||+|+|||||+--+
T Consensus 24 GGl~~G-iteI~G~pGsGKTtL~Lq~ 48 (333)
T 3io5_A 24 GGMQSG-LLILAGPSKSFKSNFGLTM 48 (333)
T ss_dssp CCBCSE-EEEEEESSSSSHHHHHHHH
T ss_pred CCCcCC-eEEEECCCCCCHHHHHHHH
Confidence 568899 9999999999999994433
|
| >2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.78 E-value=0.0082 Score=69.85 Aligned_cols=54 Identities=9% Similarity=0.044 Sum_probs=38.6
Q ss_pred ccCccccchhhHHHHHhcCCe---EeeeeCCC-ccccHHHHHHHHHHHHHHhHhCCCEEEEEec
Q 000979 71 GISGGQKKRVTTGEMMVGPAL---ALFMDEIS-TGLDSSTTFQIVNCLRQNIHINSGTAVISLL 130 (1202)
Q Consensus 71 gLSGGQKqRvsIAraLv~~P~---ILlLDEpT-SGLDs~sa~~vv~~L~~~a~~~~tTiIiaih 130 (1202)
+++++.+||++|||+++++|+ +|++|||| +|||+... .+++.| . .+.++|+.++
T Consensus 118 ~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~-~~lk~L---~--~~v~iIlVin 175 (418)
T 2qag_C 118 KFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDI-EFMKRL---H--EKVNIIPLIA 175 (418)
T ss_dssp HHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHH-HHHHHH---T--TTSEEEEEEE
T ss_pred HHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHH-HHHHHH---h--ccCcEEEEEE
Confidence 467888999999999999999 99999999 69998653 444444 2 3566666554
|
| >1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=94.75 E-value=0.0096 Score=64.71 Aligned_cols=33 Identities=30% Similarity=0.590 Sum_probs=23.5
Q ss_pred eecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCC
Q 000979 632 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRK 666 (1202)
Q Consensus 632 L~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~ 666 (1202)
++++++..++| +.|.||+|+|||||+++|++..
T Consensus 37 ~~~~~~~~~~~--vll~G~~GtGKT~la~~la~~~ 69 (257)
T 1lv7_A 37 FQKLGGKIPKG--VLMVGPPGTGKTLLAKAIAGEA 69 (257)
T ss_dssp C-----CCCCE--EEEECCTTSCHHHHHHHHHHHH
T ss_pred HHHcCCCCCCe--EEEECcCCCCHHHHHHHHHHHc
Confidence 44455555555 8899999999999999999753
|
| >2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
Probab=94.64 E-value=0.0083 Score=65.14 Aligned_cols=45 Identities=29% Similarity=0.359 Sum_probs=32.9
Q ss_pred eecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCcc
Q 000979 632 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP 681 (1202)
Q Consensus 632 L~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 681 (1202)
+++.+ ..+++.++.|+|+|||||||+.+.|+..... +.+.+++..
T Consensus 23 ~~~~~-~~~~~~~i~l~G~~GsGKSTla~~L~~~l~~----~~~~~~~D~ 67 (253)
T 2p5t_B 23 TRGKK-SSKQPIAILLGGQSGAGKTTIHRIKQKEFQG----NIVIIDGDS 67 (253)
T ss_dssp HTTCC-CCSSCEEEEEESCGGGTTHHHHHHHHHHTTT----CCEEECGGG
T ss_pred HccCC-cccCCeEEEEECCCCCCHHHHHHHHHHhcCC----CcEEEecHH
Confidence 44444 5677899999999999999999999875432 234556543
|
| >2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus} | Back alignment and structure |
|---|
Probab=94.64 E-value=0.015 Score=59.88 Aligned_cols=25 Identities=36% Similarity=0.450 Sum_probs=22.5
Q ss_pred eCCeEEEEEcCCCCCHHHHHHHHhC
Q 000979 640 RPGVLTALMGVSGAGKTTLMDVLAG 664 (1202)
Q Consensus 640 ~~Ge~~al~G~sGaGKSTLl~~l~g 664 (1202)
+++.++.|.|++||||||+.+.|+.
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4578999999999999999999975
|
| >1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A | Back alignment and structure |
|---|
Probab=94.58 E-value=0.016 Score=59.42 Aligned_cols=24 Identities=25% Similarity=0.394 Sum_probs=21.7
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCC
Q 000979 642 GVLTALMGVSGAGKTTLMDVLAGR 665 (1202)
Q Consensus 642 Ge~~al~G~sGaGKSTLl~~l~g~ 665 (1202)
|.++.|.|++||||||+.+.|+..
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~ 26 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDN 26 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 678999999999999999999753
|
| >1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A | Back alignment and structure |
|---|
Probab=94.57 E-value=0.015 Score=59.61 Aligned_cols=22 Identities=36% Similarity=0.528 Sum_probs=19.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhCC
Q 000979 644 LTALMGVSGAGKTTLMDVLAGR 665 (1202)
Q Consensus 644 ~~al~G~sGaGKSTLl~~l~g~ 665 (1202)
.+.|+||||||||||++.|...
T Consensus 3 pIVi~GPSG~GK~Tl~~~L~~~ 24 (186)
T 1ex7_A 3 PIVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 3789999999999999998654
|
| >1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F | Back alignment and structure |
|---|
Probab=94.55 E-value=0.01 Score=65.87 Aligned_cols=33 Identities=33% Similarity=0.228 Sum_probs=28.7
Q ss_pred ec-ceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCC
Q 000979 633 NG-VSGAFRPGVLTALMGVSGAGKTTLMDVLAGRK 666 (1202)
Q Consensus 633 ~~-vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~ 666 (1202)
++ ++++.+ |++++++|++|+||||++..|++..
T Consensus 89 ~~~i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~~ 122 (297)
T 1j8m_F 89 EPKVIPDKI-PYVIMLVGVQGTGKTTTAGKLAYFY 122 (297)
T ss_dssp CCCCSCSSS-SEEEEEECSSCSSTTHHHHHHHHHH
T ss_pred ccccccCCC-CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 45 777766 9999999999999999999999853
|
| >2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A | Back alignment and structure |
|---|
Probab=94.54 E-value=0.015 Score=67.64 Aligned_cols=45 Identities=24% Similarity=0.096 Sum_probs=34.4
Q ss_pred ecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCcc
Q 000979 633 NGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP 681 (1202)
Q Consensus 633 ~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 681 (1202)
+++++. +|++++++|+|||||||++..|++..... .+.+.+.+.+
T Consensus 91 ~~i~l~--~~~vi~i~G~~GsGKTT~~~~LA~~l~~~--g~~Vllvd~D 135 (425)
T 2ffh_A 91 RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGK--GRRPLLVAAD 135 (425)
T ss_dssp CCCCCC--SSEEEEEECCTTSSHHHHHHHHHHHHHTT--TCCEEEEECC
T ss_pred ccccCC--CCeEEEEECCCCCCHHHHHHHHHHHHHHc--CCeEEEeecc
Confidence 567877 89999999999999999999999854311 2455555544
|
| >1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14 | Back alignment and structure |
|---|
Probab=94.36 E-value=0.042 Score=56.57 Aligned_cols=53 Identities=19% Similarity=0.382 Sum_probs=41.0
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEec---------CCCHHHHHhcceEEEEe
Q 000979 773 NPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIH---------QPSIDIFEAFDELFLMK 830 (1202)
Q Consensus 773 ~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H---------~~~~~~~~~~d~v~~l~ 830 (1202)
+.+++++||.-- +|+. .++.++++++.|..||++.+ .++.++.+++|.|.-|.
T Consensus 81 ~~dvViIDEaqf-l~~~----~v~~l~~l~~~~~~Vi~~Gl~~df~~~~F~~~~~L~~~AD~V~el~ 142 (191)
T 1xx6_A 81 DTEVIAIDEVQF-FDDE----IVEIVNKIAESGRRVICAGLDMDFRGKPFGPIPELMAIAEFVDKIQ 142 (191)
T ss_dssp TCSEEEECSGGG-SCTH----HHHHHHHHHHTTCEEEEEECSBCTTSCBCTTHHHHHHHCSEEEECC
T ss_pred cCCEEEEECCCC-CCHH----HHHHHHHHHhCCCEEEEEecccccccCcCccHHHHHHHcccEEeee
Confidence 579999999654 6643 35667777777999999999 55577889999998774
|
| >2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A | Back alignment and structure |
|---|
Probab=94.32 E-value=0.018 Score=62.42 Aligned_cols=24 Identities=25% Similarity=0.364 Sum_probs=21.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCC
Q 000979 643 VLTALMGVSGAGKTTLMDVLAGRK 666 (1202)
Q Consensus 643 e~~al~G~sGaGKSTLl~~l~g~~ 666 (1202)
.+++|+||||||||||.+.|++..
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHhcC
Confidence 378999999999999999998754
|
| >3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=94.31 E-value=0.021 Score=58.41 Aligned_cols=25 Identities=36% Similarity=0.343 Sum_probs=21.6
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCC
Q 000979 641 PGVLTALMGVSGAGKTTLMDVLAGR 665 (1202)
Q Consensus 641 ~Ge~~al~G~sGaGKSTLl~~l~g~ 665 (1202)
++..+.|+||+||||||+.+.|+..
T Consensus 4 ~~~~i~l~G~~GsGKst~a~~La~~ 28 (185)
T 3trf_A 4 NLTNIYLIGLMGAGKTSVGSQLAKL 28 (185)
T ss_dssp -CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
Confidence 3668999999999999999999753
|
| >3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A | Back alignment and structure |
|---|
Probab=94.23 E-value=0.021 Score=57.48 Aligned_cols=19 Identities=26% Similarity=0.655 Sum_probs=18.3
Q ss_pred EEEEEcCCCCCHHHHHHHH
Q 000979 644 LTALMGVSGAGKTTLMDVL 662 (1202)
Q Consensus 644 ~~al~G~sGaGKSTLl~~l 662 (1202)
+++|.||+||||||+.+.|
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 7899999999999999999
|
| >1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A | Back alignment and structure |
|---|
Probab=94.22 E-value=0.023 Score=59.88 Aligned_cols=24 Identities=33% Similarity=0.488 Sum_probs=21.7
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhC
Q 000979 641 PGVLTALMGVSGAGKTTLMDVLAG 664 (1202)
Q Consensus 641 ~Ge~~al~G~sGaGKSTLl~~l~g 664 (1202)
.+-+++|.|++||||||+.+.|+.
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999999986
|
| >3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A | Back alignment and structure |
|---|
Probab=94.16 E-value=0.02 Score=58.25 Aligned_cols=25 Identities=40% Similarity=0.306 Sum_probs=22.2
Q ss_pred eCCeEEEEEcCCCCCHHHHHHHHhC
Q 000979 640 RPGVLTALMGVSGAGKTTLMDVLAG 664 (1202)
Q Consensus 640 ~~Ge~~al~G~sGaGKSTLl~~l~g 664 (1202)
..+..+.|.|++||||||+.+.|+.
T Consensus 9 ~~~~~i~i~G~~GsGKst~~~~l~~ 33 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLGKELAS 33 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHHHHHHH
T ss_pred ccCCeEEEEeCCCCCHHHHHHHHHH
Confidence 3567899999999999999999974
|
| >2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A* | Back alignment and structure |
|---|
Probab=94.09 E-value=0.025 Score=58.78 Aligned_cols=26 Identities=27% Similarity=0.313 Sum_probs=23.5
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCC
Q 000979 641 PGVLTALMGVSGAGKTTLMDVLAGRK 666 (1202)
Q Consensus 641 ~Ge~~al~G~sGaGKSTLl~~l~g~~ 666 (1202)
+|.+++|.|++||||||+.+.|+...
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 57899999999999999999998654
|
| >1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=94.07 E-value=0.069 Score=60.77 Aligned_cols=63 Identities=6% Similarity=0.051 Sum_probs=43.7
Q ss_pred HhcCCeEeeeeCCCccccHHHHHHHHHHHHHHhHhCCCEEEEEecCCChHHHhhhcceEEecCCcEEEEcCc
Q 000979 86 MVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPR 157 (1202)
Q Consensus 86 Lv~~P~ILlLDEpTSGLDs~sa~~vv~~L~~~a~~~~tTiIiaihQp~~s~~~~fD~IvvL~~G~vvy~G~~ 157 (1202)
+.++|+|+++|||++ ||..+...+.+.+.+.. .++++|++.|++..-.-. +.+...++...+.
T Consensus 131 l~~~~~vlilDE~~~-L~~~~~~~L~~~le~~~--~~~~~Il~t~~~~~l~~~------l~sR~~~~~~~~~ 193 (354)
T 1sxj_E 131 LAHRYKCVIINEANS-LTKDAQAALRRTMEKYS--KNIRLIMVCDSMSPIIAP------IKSQCLLIRCPAP 193 (354)
T ss_dssp ---CCEEEEEECTTS-SCHHHHHHHHHHHHHST--TTEEEEEEESCSCSSCHH------HHTTSEEEECCCC
T ss_pred cCCCCeEEEEeCccc-cCHHHHHHHHHHHHhhc--CCCEEEEEeCCHHHHHHH------HHhhceEEecCCc
Confidence 678999999999999 99999988988887743 467888888877531111 2344556666654
|
| >2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A* | Back alignment and structure |
|---|
Probab=94.04 E-value=0.032 Score=66.24 Aligned_cols=96 Identities=9% Similarity=0.021 Sum_probs=62.8
Q ss_pred HHHhhhhhhhhhHHHHHHHHHhCCcccccc--cccCCcccccCccccchh----------hHHHHHhcCCe-EeeeeCCC
Q 000979 33 MKAIATEGQEANVITDYYLKVLGLDVCADT--MVGDEMIRGISGGQKKRV----------TTGEMMVGPAL-ALFMDEIS 99 (1202)
Q Consensus 33 ~~~~~~~~~~~~~~v~~il~~lgL~~~~dT--~VG~~~~~gLSGGQKqRv----------sIAraLv~~P~-ILlLDEpT 99 (1202)
.+.+.....|.+++ .+.+...|+.+..+- .+. ..+||||+||. .+|+++...|. ++++||++
T Consensus 233 ~~~L~~~~~EmerR-~~ll~~~Gv~~i~~yn~~~~----~~~s~G~~~~~~~~~pg~~~~~~a~~l~~lP~ivlvIDE~~ 307 (512)
T 2ius_A 233 ANALRWCVNEMERR-YKLMSALGVRNLAGYNEKIA----EADRMMRPIPDPYWKPGDSMDAQHPVLKKEPYIVVLVDEFA 307 (512)
T ss_dssp HHHHHHHHHHHHHH-HHHHHHTTCSSHHHHHHHHH----HHHHTTCCCBCTTC---------CCBCCCCCEEEEEEETHH
T ss_pred HHHHHHHHHHHHHH-HHHHHHcCCccHHHHHHHHH----HHhhcCCcccccccccccchhccccccccCCcEEEEEeCHH
Confidence 33444444555554 357888888764332 232 35899999974 35667778897 89999999
Q ss_pred ccccHHHHHHHHHHHHHHh---HhCCCEEEEEecCCCh
Q 000979 100 TGLDSSTTFQIVNCLRQNI---HINSGTAVISLLQPAP 134 (1202)
Q Consensus 100 SGLDs~sa~~vv~~L~~~a---~~~~tTiIiaihQp~~ 134 (1202)
.-+|... ..+.+.+.+++ +.-|.++|+++|.|+.
T Consensus 308 ~ll~~~~-~~~~~~l~~Lar~gRa~GI~LIlaTQrp~~ 344 (512)
T 2ius_A 308 DLMMTVG-KKVEELIARLAQKARAAGIHLVLATQRPSV 344 (512)
T ss_dssp HHHHHHH-HHHHHHHHHHHHHCGGGTEEEEEEESCCCT
T ss_pred HHHhhhh-HHHHHHHHHHHHHhhhCCcEEEEEecCCcc
Confidence 9998532 34555555444 3446789999999883
|
| >1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B* | Back alignment and structure |
|---|
Probab=94.00 E-value=0.025 Score=62.59 Aligned_cols=27 Identities=26% Similarity=0.313 Sum_probs=23.4
Q ss_pred eCCeEEEEEcCCCCCHHHHHHHHhCCC
Q 000979 640 RPGVLTALMGVSGAGKTTLMDVLAGRK 666 (1202)
Q Consensus 640 ~~Ge~~al~G~sGaGKSTLl~~l~g~~ 666 (1202)
..|.++.|.|||||||||+.+.|+...
T Consensus 31 ~~~~livl~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 31 ESPTAFLLGGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 456799999999999999999997643
|
| >2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A* | Back alignment and structure |
|---|
Probab=93.98 E-value=0.025 Score=58.69 Aligned_cols=23 Identities=30% Similarity=0.510 Sum_probs=20.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCC
Q 000979 644 LTALMGVSGAGKTTLMDVLAGRK 666 (1202)
Q Consensus 644 ~~al~G~sGaGKSTLl~~l~g~~ 666 (1202)
+++|.|++||||||+.+.|+...
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l 24 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKL 24 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHhc
Confidence 68999999999999999998743
|
| >2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=93.96 E-value=0.029 Score=58.64 Aligned_cols=25 Identities=36% Similarity=0.634 Sum_probs=22.6
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCC
Q 000979 641 PGVLTALMGVSGAGKTTLMDVLAGR 665 (1202)
Q Consensus 641 ~Ge~~al~G~sGaGKSTLl~~l~g~ 665 (1202)
+|.+++|.|++||||||+.+.|+..
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~~ 27 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKDW 27 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 4678999999999999999999864
|
| >2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A | Back alignment and structure |
|---|
Probab=93.94 E-value=0.01 Score=64.15 Aligned_cols=43 Identities=23% Similarity=0.180 Sum_probs=36.9
Q ss_pred cccCccccchhhHHHHH-hcCCeEeeee----CCCccccHHHHHHHHHHHHHHhH
Q 000979 70 RGISGGQKKRVTTGEMM-VGPALALFMD----EISTGLDSSTTFQIVNCLRQNIH 119 (1202)
Q Consensus 70 ~gLSGGQKqRvsIAraL-v~~P~ILlLD----EpTSGLDs~sa~~vv~~L~~~a~ 119 (1202)
..+|| |+ +++ +.+|++++|| |||+|||..+...+.+.+++...
T Consensus 151 ~~lSg----rv---~al~~~~P~~lllD~~~~EP~~~ld~~~~~~i~~~l~~~~~ 198 (246)
T 2bbw_A 151 HPPSG----RV---YNLDFNPPHVHGIDDVTGEPLVQQEDDKPEAVAARLRQYKD 198 (246)
T ss_dssp ETTTT----EE---EETTTSCCSSTTBCTTTCCBCBCCGGGSHHHHHHHHHHHHH
T ss_pred cCCCC----Cc---cccccCCCcccccccccccccccCCCCcHHHHHHHHHHHHH
Confidence 45888 77 677 9999999999 99999999998899888887643
|
| >2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A* | Back alignment and structure |
|---|
Probab=93.91 E-value=0.028 Score=58.83 Aligned_cols=25 Identities=24% Similarity=0.453 Sum_probs=22.8
Q ss_pred eCCeEEEEEcCCCCCHHHHHHHHhC
Q 000979 640 RPGVLTALMGVSGAGKTTLMDVLAG 664 (1202)
Q Consensus 640 ~~Ge~~al~G~sGaGKSTLl~~l~g 664 (1202)
++|.+++|.|++||||||+.+.|+.
T Consensus 8 ~~~~~I~l~G~~GsGKST~~~~L~~ 32 (212)
T 2wwf_A 8 KKGKFIVFEGLDRSGKSTQSKLLVE 32 (212)
T ss_dssp BCSCEEEEEESTTSSHHHHHHHHHH
T ss_pred hcCCEEEEEcCCCCCHHHHHHHHHH
Confidence 4678999999999999999999975
|
| >1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=93.81 E-value=0.00092 Score=69.83 Aligned_cols=56 Identities=18% Similarity=0.115 Sum_probs=44.4
Q ss_pred HHH-HHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHhHhCCCEEEEEecCCChHHHhhhcceEEec
Q 000979 82 TGE-MMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLS 147 (1202)
Q Consensus 82 IAr-aLv~~P~ILlLDEpTSGLDs~sa~~vv~~L~~~a~~~~tTiIiaihQp~~s~~~~fD~IvvL~ 147 (1202)
+++ +++.+|++++|||+|+++|+.++..|.+.|.+.... +.++ | ++ ..||.|++++
T Consensus 116 ~~~~~~l~~p~~~ilde~~~~~d~~~e~~i~~~l~~~~~~----~~~a---~--~~-~~~D~iivnd 172 (198)
T 1lvg_A 116 CPIYIFVQPPSLDVLEQRLRLRNTETEESLAKRLAAARTD----MESS---K--EP-GLFDLVIIND 172 (198)
T ss_dssp CCEEEEEECSCHHHHHHHHHHHTCSCHHHHHHHHHHHHHH----TTGG---G--ST-TTCSEEEECS
T ss_pred CcEEEEEeCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHH----HHHh---h--cc-CCceEEEECC
Confidence 565 889999999999999999999999999999875432 1111 3 33 7899999986
|
| >1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=93.79 E-value=0.031 Score=56.69 Aligned_cols=22 Identities=23% Similarity=0.412 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhC
Q 000979 643 VLTALMGVSGAGKTTLMDVLAG 664 (1202)
Q Consensus 643 e~~al~G~sGaGKSTLl~~l~g 664 (1202)
.++.|.|++||||||+.+.|+.
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4789999999999999999985
|
| >1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2 | Back alignment and structure |
|---|
Probab=93.79 E-value=0.049 Score=60.35 Aligned_cols=37 Identities=32% Similarity=0.310 Sum_probs=32.3
Q ss_pred ceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCC
Q 000979 628 KLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGR 665 (1202)
Q Consensus 628 ~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~ 665 (1202)
....+++....+ .|.-++|+|+||+|||||...|.++
T Consensus 131 ~~~~~H~~~v~~-~g~~vl~~G~sG~GKSt~a~~l~~~ 167 (314)
T 1ko7_A 131 RTTSLHGVLVDV-YGVGVLITGDSGIGKSETALELIKR 167 (314)
T ss_dssp EEEEEESEEEEE-TTEEEEEEESTTSSHHHHHHHHHHT
T ss_pred cceeeeEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHhc
Confidence 346789988887 8899999999999999999999765
|
| >2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A | Back alignment and structure |
|---|
Probab=93.77 E-value=0.028 Score=57.90 Aligned_cols=26 Identities=19% Similarity=0.358 Sum_probs=22.9
Q ss_pred eCCeEEEEEcCCCCCHHHHHHHHhCC
Q 000979 640 RPGVLTALMGVSGAGKTTLMDVLAGR 665 (1202)
Q Consensus 640 ~~Ge~~al~G~sGaGKSTLl~~l~g~ 665 (1202)
.++.+++|.|++||||||+.+.|+..
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~La~~ 32 (196)
T 2c95_A 7 KKTNIIFVVGGPGSGKGTQCEKIVQK 32 (196)
T ss_dssp TTSCEEEEEECTTSSHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 46779999999999999999999753
|
| >1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10 | Back alignment and structure |
|---|
Probab=93.76 E-value=0.028 Score=56.56 Aligned_cols=23 Identities=30% Similarity=0.407 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCC
Q 000979 643 VLTALMGVSGAGKTTLMDVLAGR 665 (1202)
Q Consensus 643 e~~al~G~sGaGKSTLl~~l~g~ 665 (1202)
.+++|+|++|||||||++.|.+.
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~ 27 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAA 27 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHh
Confidence 37899999999999999999864
|
| >2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A* | Back alignment and structure |
|---|
Probab=93.76 E-value=0.082 Score=55.04 Aligned_cols=53 Identities=15% Similarity=0.216 Sum_probs=43.0
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEec---------CCCHHHHHhcceEEEEe
Q 000979 773 NPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIH---------QPSIDIFEAFDELFLMK 830 (1202)
Q Consensus 773 ~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H---------~~~~~~~~~~d~v~~l~ 830 (1202)
+.+++++||.-- +|+. . ++.+++++..|..||++-+ .++.++.+++|.|.-|.
T Consensus 101 ~~dvViIDEaQF-~~~~---~-V~~l~~l~~~~~~Vi~~Gl~~DF~~~~F~~~~~Ll~~AD~Vtel~ 162 (214)
T 2j9r_A 101 EMDVIAIDEVQF-FDGD---I-VEVVQVLANRGYRVIVAGLDQDFRGLPFGQVPQLMAIAEHVTKLQ 162 (214)
T ss_dssp SCCEEEECCGGG-SCTT---H-HHHHHHHHHTTCEEEEEECSBCTTSCBCTTHHHHHHHCSEEEECC
T ss_pred CCCEEEEECccc-CCHH---H-HHHHHHHhhCCCEEEEEecccccccCccccHHHHHHhcccEEeee
Confidence 579999999876 6643 2 3667777777999999999 77788899999998885
|
| >1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2 | Back alignment and structure |
|---|
Probab=93.73 E-value=0.028 Score=56.91 Aligned_cols=22 Identities=36% Similarity=0.545 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhCC
Q 000979 644 LTALMGVSGAGKTTLMDVLAGR 665 (1202)
Q Consensus 644 ~~al~G~sGaGKSTLl~~l~g~ 665 (1202)
.+.|+|++||||||+.+.|+..
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~ 27 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKD 27 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 4899999999999999999864
|
| >3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A* | Back alignment and structure |
|---|
Probab=93.73 E-value=0.048 Score=63.02 Aligned_cols=74 Identities=8% Similarity=0.014 Sum_probs=50.9
Q ss_pred cchhhHHHHHh--cCCeEeeeeCCCccccHHHH------------HHHHHHHHHHhHhCCCEEEEEecCCC---------
Q 000979 77 KKRVTTGEMMV--GPALALFMDEISTGLDSSTT------------FQIVNCLRQNIHINSGTAVISLLQPA--------- 133 (1202)
Q Consensus 77 KqRvsIAraLv--~~P~ILlLDEpTSGLDs~sa------------~~vv~~L~~~a~~~~tTiIiaihQp~--------- 133 (1202)
++.+..+++++ .+|+++++||||+.+|+... .++++.|++++++.+.|||++.|-.+
T Consensus 259 ~~~l~~~~~~l~~~~~~llVIDs~t~~~~~~~sg~g~l~~Rq~~l~~il~~L~~lake~gitVIlv~Hv~~~~~g~~~~~ 338 (400)
T 3lda_A 259 LRLLDAAAQMMSESRFSLIVVDSVMALYRTDFSGRGELSARQMHLAKFMRALQRLADQFGVAVVVTNQVVAQVDGGMAFN 338 (400)
T ss_dssp HHHHHHHHHHHHHSCEEEEEEETGGGGCC------CCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEC-----------
T ss_pred HHHHHHHHHHHHhcCCceEEecchhhhCchhhcCccchHHHHHHHHHHHHHHHHHHHHcCCEEEEEEeecccCCcccccc
Confidence 34444444443 46999999999999996433 57888899988878999999988621
Q ss_pred ---------hHHHhhhcceEEecCCc
Q 000979 134 ---------PETYDLFDDIILLSDGQ 150 (1202)
Q Consensus 134 ---------~s~~~~fD~IvvL~~G~ 150 (1202)
..+-..+|.++.|.+|+
T Consensus 339 g~~~~p~gg~~l~~~ad~vl~L~~~~ 364 (400)
T 3lda_A 339 PDPKKPIGGNIMAYSSTTRLGFKKGK 364 (400)
T ss_dssp ---------CHHHHHCSEEEEEEECS
T ss_pred CCCccCCchhHHHHhcceEEEEEecC
Confidence 12345578888887664
|
| >1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D* | Back alignment and structure |
|---|
Probab=93.69 E-value=0.014 Score=64.98 Aligned_cols=55 Identities=13% Similarity=-0.005 Sum_probs=37.1
Q ss_pred cCccccchhhHHHHHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHhHhCCCEEEEEecC
Q 000979 72 ISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQ 131 (1202)
Q Consensus 72 LSGGQKqRvsIAraLv~~P~ILlLDEpTSGLDs~sa~~vv~~L~~~a~~~~tTiIiaihQ 131 (1202)
++..+|||++|||+++.+|+.++| +||+.+..++++.+++.....+.|+|+.+|-
T Consensus 203 ~~eLs~~r~~iaRal~~~P~~~lL-----vLDa~t~~~~~~~~~~~~~~~~~t~iivTh~ 257 (304)
T 1rj9_A 203 MEELKKVKRAIAKADPEEPKEVWL-----VLDAVTGQNGLEQAKKFHEAVGLTGVIVTKL 257 (304)
T ss_dssp HHHHHHHHHHHHHHCTTCCSEEEE-----EEETTBCTHHHHHHHHHHHHHCCSEEEEECT
T ss_pred HHHHHHHHHHHHHhhcCCCCeEEE-----EEcHHHHHHHHHHHHHHHHHcCCcEEEEECC
Confidence 456669999999999999994444 4555555556666666554446666666564
|
| >3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=93.65 E-value=0.027 Score=61.67 Aligned_cols=23 Identities=39% Similarity=0.655 Sum_probs=21.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCC
Q 000979 644 LTALMGVSGAGKTTLMDVLAGRK 666 (1202)
Q Consensus 644 ~~al~G~sGaGKSTLl~~l~g~~ 666 (1202)
.++|+|++|||||||++.|+|..
T Consensus 5 ~i~lvG~~g~GKTTL~n~l~g~~ 27 (271)
T 3k53_A 5 TVALVGNPNVGKTTIFNALTGLR 27 (271)
T ss_dssp EEEEEECSSSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999864
|
| >1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A* | Back alignment and structure |
|---|
Probab=93.63 E-value=0.016 Score=60.87 Aligned_cols=23 Identities=52% Similarity=0.762 Sum_probs=20.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCC
Q 000979 644 LTALMGVSGAGKTTLMDVLAGRK 666 (1202)
Q Consensus 644 ~~al~G~sGaGKSTLl~~l~g~~ 666 (1202)
+++|.|++||||||+++.|+...
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l 24 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAF 24 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHH
Confidence 68999999999999999998753
|
| >1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A* | Back alignment and structure |
|---|
Probab=93.62 E-value=0.033 Score=58.39 Aligned_cols=25 Identities=44% Similarity=0.534 Sum_probs=23.0
Q ss_pred eCCeEEEEEcCCCCCHHHHHHHHhC
Q 000979 640 RPGVLTALMGVSGAGKTTLMDVLAG 664 (1202)
Q Consensus 640 ~~Ge~~al~G~sGaGKSTLl~~l~g 664 (1202)
++|.+++|.|++||||||+.+.|+.
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 7 RRGALIVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHH
Confidence 5688999999999999999999985
|
| >1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=93.59 E-value=0.035 Score=57.58 Aligned_cols=23 Identities=26% Similarity=0.536 Sum_probs=21.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCC
Q 000979 643 VLTALMGVSGAGKTTLMDVLAGR 665 (1202)
Q Consensus 643 e~~al~G~sGaGKSTLl~~l~g~ 665 (1202)
.+++|.|++||||||+.+.|+..
T Consensus 9 ~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 9 IIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHC
Confidence 57999999999999999999865
|
| >4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=93.57 E-value=0.3 Score=56.67 Aligned_cols=27 Identities=33% Similarity=0.454 Sum_probs=22.5
Q ss_pred eCCeEEEEEcCCCCCHHHHHHHHhCCC
Q 000979 640 RPGVLTALMGVSGAGKTTLMDVLAGRK 666 (1202)
Q Consensus 640 ~~Ge~~al~G~sGaGKSTLl~~l~g~~ 666 (1202)
++-.=+.|.||+|+|||+|.+++++..
T Consensus 204 ~~prGiLL~GPPGtGKT~lakAiA~~~ 230 (428)
T 4b4t_K 204 DPPRGVLLYGPPGTGKTMLVKAVANST 230 (428)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 344458999999999999999999753
|
| >3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=93.57 E-value=0.12 Score=50.32 Aligned_cols=42 Identities=2% Similarity=0.078 Sum_probs=29.4
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCC
Q 000979 773 NPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQP 815 (1202)
Q Consensus 773 ~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~ 815 (1202)
+..+|++||.- .|+...+..+.+.+.+..+.+..+|++++.+
T Consensus 75 ~~~~l~lDei~-~l~~~~q~~Ll~~l~~~~~~~~~iI~~tn~~ 116 (143)
T 3co5_A 75 EGGVLYVGDIA-QYSRNIQTGITFIIGKAERCRVRVIASCSYA 116 (143)
T ss_dssp TTSEEEEEECT-TCCHHHHHHHHHHHHHHTTTTCEEEEEEEEC
T ss_pred CCCeEEEeChH-HCCHHHHHHHHHHHHhCCCCCEEEEEecCCC
Confidence 45789999975 5788878888887776433355677777654
|
| >3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.47 E-value=0.25 Score=57.01 Aligned_cols=27 Identities=33% Similarity=0.452 Sum_probs=23.3
Q ss_pred eCCeEEEEEcCCCCCHHHHHHHHhCCC
Q 000979 640 RPGVLTALMGVSGAGKTTLMDVLAGRK 666 (1202)
Q Consensus 640 ~~Ge~~al~G~sGaGKSTLl~~l~g~~ 666 (1202)
.++.-+.|.||+|+|||+|.+.|+...
T Consensus 146 ~~~~~vLL~GppGtGKT~la~aia~~~ 172 (389)
T 3vfd_A 146 APARGLLLFGPPGNGKTMLAKAVAAES 172 (389)
T ss_dssp CCCSEEEEESSTTSCHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHhh
Confidence 356789999999999999999998653
|
| >3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A* | Back alignment and structure |
|---|
Probab=93.47 E-value=0.64 Score=62.64 Aligned_cols=34 Identities=26% Similarity=0.350 Sum_probs=28.3
Q ss_pred eecce--EEEeCCeEEEEEcCCCCCHHHHHHHHhCC
Q 000979 632 LNGVS--GAFRPGVLTALMGVSGAGKTTLMDVLAGR 665 (1202)
Q Consensus 632 L~~vs--~~i~~Ge~~al~G~sGaGKSTLl~~l~g~ 665 (1202)
|+.+- +-+++|+++.|.||+|+|||||+..++..
T Consensus 720 LD~lLg~GGl~~G~lVlI~G~PG~GKTtLal~lA~~ 755 (1706)
T 3cmw_A 720 LDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAA 755 (1706)
T ss_dssp HHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHhccCCcCCCceEEEECCCCCCcHHHHHHHHHH
Confidence 44444 26999999999999999999999998763
|
| >2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B} | Back alignment and structure |
|---|
Probab=93.46 E-value=0.088 Score=51.82 Aligned_cols=48 Identities=8% Similarity=0.010 Sum_probs=34.1
Q ss_pred HHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHhHhCCCE-EEEEecCCCh
Q 000979 85 MMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGT-AVISLLQPAP 134 (1202)
Q Consensus 85 aLv~~P~ILlLDEpTSGLDs~sa~~vv~~L~~~a~~~~tT-iIiaihQp~~ 134 (1202)
+++.+|++|+||||++ +|...+..+.+.+.+... .+++ +|++.|.+..
T Consensus 79 ~~~~~~~lLilDE~~~-~~~~~~~~l~~li~~~~~-~g~~~iiits~~~p~ 127 (149)
T 2kjq_A 79 DAAFEAEYLAVDQVEK-LGNEEQALLFSIFNRFRN-SGKGFLLLGSEYTPQ 127 (149)
T ss_dssp GGGGGCSEEEEESTTC-CCSHHHHHHHHHHHHHHH-HTCCEEEEEESSCTT
T ss_pred HHHhCCCEEEEeCccc-cChHHHHHHHHHHHHHHH-cCCcEEEEECCCCHH
Confidence 4567899999999998 555457778888877554 4555 7777675543
|
| >2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.46 E-value=0.016 Score=60.03 Aligned_cols=27 Identities=26% Similarity=0.429 Sum_probs=23.5
Q ss_pred EeCCeEEEEEcCCCCCHHHHHHHHhCC
Q 000979 639 FRPGVLTALMGVSGAGKTTLMDVLAGR 665 (1202)
Q Consensus 639 i~~Ge~~al~G~sGaGKSTLl~~l~g~ 665 (1202)
++++.+++|.|++||||||+.+.|+..
T Consensus 9 ~~~~~~I~l~G~~GsGKsT~a~~L~~~ 35 (199)
T 2bwj_A 9 LRKCKIIFIIGGPGSGKGTQCEKLVEK 35 (199)
T ss_dssp HHHSCEEEEEECTTSSHHHHHHHHHHH
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 456779999999999999999999753
|
| >4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=93.41 E-value=0.31 Score=56.12 Aligned_cols=27 Identities=33% Similarity=0.507 Sum_probs=22.5
Q ss_pred eCCeEEEEEcCCCCCHHHHHHHHhCCC
Q 000979 640 RPGVLTALMGVSGAGKTTLMDVLAGRK 666 (1202)
Q Consensus 640 ~~Ge~~al~G~sGaGKSTLl~~l~g~~ 666 (1202)
++-.=+.|.||+|+|||+|.++|++..
T Consensus 214 ~~prGvLLyGPPGTGKTlLAkAiA~e~ 240 (437)
T 4b4t_I 214 KPPKGVILYGAPGTGKTLLAKAVANQT 240 (437)
T ss_dssp CCCSEEEEESSTTTTHHHHHHHHHHHH
T ss_pred CCCCCCceECCCCchHHHHHHHHHHHh
Confidence 344458999999999999999999853
|
| >1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=93.36 E-value=0.041 Score=56.50 Aligned_cols=23 Identities=26% Similarity=0.371 Sum_probs=20.9
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhC
Q 000979 642 GVLTALMGVSGAGKTTLMDVLAG 664 (1202)
Q Consensus 642 Ge~~al~G~sGaGKSTLl~~l~g 664 (1202)
+.+++|.|++||||||+.+.|+.
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 56899999999999999999974
|
| >1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=93.33 E-value=0.036 Score=56.81 Aligned_cols=22 Identities=23% Similarity=0.508 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhCC
Q 000979 644 LTALMGVSGAGKTTLMDVLAGR 665 (1202)
Q Consensus 644 ~~al~G~sGaGKSTLl~~l~g~ 665 (1202)
++.|.|++||||||+.+.|+..
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~ 24 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEI 24 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999753
|
| >2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A | Back alignment and structure |
|---|
Probab=93.14 E-value=0.13 Score=60.76 Aligned_cols=80 Identities=10% Similarity=-0.024 Sum_probs=60.8
Q ss_pred cccCccccchhhHHHHHh--cCCeEeeeeCCCccccH--------HHHHHHHHHHHHHhHhCCCEEEEEecC--------
Q 000979 70 RGISGGQKKRVTTGEMMV--GPALALFMDEISTGLDS--------STTFQIVNCLRQNIHINSGTAVISLLQ-------- 131 (1202)
Q Consensus 70 ~gLSGGQKqRvsIAraLv--~~P~ILlLDEpTSGLDs--------~sa~~vv~~L~~~a~~~~tTiIiaihQ-------- 131 (1202)
.++|++|.+ +.++.++ .+|+++++|+++...++ ..-..+.+.|+.+|++.+.+||++.|-
T Consensus 294 ~~~s~~~i~--~~~~~l~~~~~~~livID~l~~~~~~~~~~~~~~~~i~~i~~~Lk~lAke~~i~vi~~sql~r~~e~~~ 371 (454)
T 2r6a_A 294 PSIRVSDIR--AKCRRLKQESGLGMIVIDYLQLIQGSGRSKENRQQEVSEISRSLKALARELEVPVIALSQLSRSVEQRQ 371 (454)
T ss_dssp TTCCHHHHH--HHHHHHHTTTCCCEEEEECGGGSCCSCC----CHHHHHHHHHHHHHHHHHHTCCEEEEECCCTTSTTC-
T ss_pred CCCCHHHHH--HHHHHHHHHcCCCEEEEccHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEecCCcccccCC
Confidence 368999876 6677776 57999999999998743 122577888999988778888877661
Q ss_pred ---CCh-------HHHhhhcceEEecCCcE
Q 000979 132 ---PAP-------ETYDLFDDIILLSDGQI 151 (1202)
Q Consensus 132 ---p~~-------s~~~~fD~IvvL~~G~v 151 (1202)
|.. ++-+.+|.|++|..++.
T Consensus 372 ~~~p~lsdlr~Sg~ie~~aD~vi~l~r~~~ 401 (454)
T 2r6a_A 372 DKRPMMSDIRESGSIEQDADIVAFLYRDDY 401 (454)
T ss_dssp --CCCTHHHHTTCSHHHHCSEEEEEEETTC
T ss_pred CCCCcHHHhhccchhHhhCCEEEEEecccc
Confidence 432 56778999999987764
|
| >1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1 | Back alignment and structure |
|---|
Probab=93.13 E-value=0.022 Score=66.11 Aligned_cols=71 Identities=7% Similarity=0.016 Sum_probs=53.6
Q ss_pred ccccCccccchhhHHHHHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHhHhCCCEEEEEecCCChHHHhhhcceE
Q 000979 69 IRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDII 144 (1202)
Q Consensus 69 ~~gLSGGQKqRvsIAraLv~~P~ILlLDEpTSGLDs~sa~~vv~~L~~~a~~~~tTiIiaihQp~~s~~~~fD~Iv 144 (1202)
...+|+|||||+++|++|...|.|+++ +++|..++ ..++.+++.....+.+++.+.......+-++++.|.
T Consensus 250 ~~~ls~g~~el~~la~aL~~~P~ILVl----NKlDl~~~-~~~~~l~~~l~~~g~~vi~iSA~~g~gi~eL~~~i~ 320 (416)
T 1udx_A 250 LKTLETLRKEVGAYDPALLRRPSLVAL----NKVDLLEE-EAVKALADALAREGLAVLPVSALTGAGLPALKEALH 320 (416)
T ss_dssp HHHHHHHHHHHHHHCHHHHHSCEEEEE----ECCTTSCH-HHHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHhhcCCEEEEE----ECCChhhH-HHHHHHHHHHHhcCCeEEEEECCCccCHHHHHHHHH
Confidence 457999999999999999999999999 99999776 566666665544566666654555556666666553
|
| >1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A* | Back alignment and structure |
|---|
Probab=93.09 E-value=0.046 Score=57.65 Aligned_cols=26 Identities=35% Similarity=0.443 Sum_probs=22.3
Q ss_pred eCCeEEEEEcCCCCCHHHHHHHHhCC
Q 000979 640 RPGVLTALMGVSGAGKTTLMDVLAGR 665 (1202)
Q Consensus 640 ~~Ge~~al~G~sGaGKSTLl~~l~g~ 665 (1202)
++|-.+.|+|++||||||+.+.|+..
T Consensus 2 ~~~~~I~l~G~~GsGKsT~a~~La~~ 27 (220)
T 1aky_A 2 SESIRMVLIGPPGAGKGTQAPNLQER 27 (220)
T ss_dssp -CCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 35678999999999999999999753
|
| >4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=93.01 E-value=0.35 Score=55.35 Aligned_cols=67 Identities=22% Similarity=0.331 Sum_probs=40.0
Q ss_pred hhCCCEEEEeCCCCCC----------CHHHHHHHHHHHHHHH----hCCCEEEEEecCCCHHHHHhcceEEEEecC--CE
Q 000979 771 VANPSIIFMDEPTSGL----------DARAAAIVMRTVRNTV----DTGRTVVCTIHQPSIDIFEAFDELFLMKRG--GQ 834 (1202)
Q Consensus 771 ~~~p~illlDEPtsgL----------D~~~~~~v~~~l~~~~----~~g~tvi~~~H~~~~~~~~~~d~v~~l~~g--G~ 834 (1202)
-..|.|+|+||--+-. |......+.++|..+- ..+..||.+|.+|+. + |.-+ +..| .+
T Consensus 239 ~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~V~vIaATNrpd~-L----DpAl-lRpGRfD~ 312 (405)
T 4b4t_J 239 EHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETSKNIKIIMATNRLDI-L----DPAL-LRPGRIDR 312 (405)
T ss_dssp HTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCCCCEEEEEEESCSSS-S----CHHH-HSTTSSCC
T ss_pred HhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCCCCCeEEEeccCChhh-C----CHhH-cCCCcCce
Confidence 4579999999965422 3344555666666653 125678999998762 1 3222 2211 14
Q ss_pred EEEEcCCCc
Q 000979 835 EIYVGPLGR 843 (1202)
Q Consensus 835 ~~~~G~~~~ 843 (1202)
.++.+.|+.
T Consensus 313 ~I~i~lPd~ 321 (405)
T 4b4t_J 313 KIEFPPPSV 321 (405)
T ss_dssp EEECCCCCH
T ss_pred EEEcCCcCH
Confidence 677788864
|
| >2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=92.98 E-value=0.036 Score=56.40 Aligned_cols=25 Identities=28% Similarity=0.310 Sum_probs=17.7
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCC
Q 000979 641 PGVLTALMGVSGAGKTTLMDVLAGR 665 (1202)
Q Consensus 641 ~Ge~~al~G~sGaGKSTLl~~l~g~ 665 (1202)
++.++.|.|++||||||+.+.|+..
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~~ 28 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHER 28 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHh
Confidence 4678999999999999999999753
|
| >3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A* | Back alignment and structure |
|---|
Probab=92.94 E-value=0.044 Score=54.44 Aligned_cols=23 Identities=30% Similarity=0.632 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCC
Q 000979 644 LTALMGVSGAGKTTLMDVLAGRK 666 (1202)
Q Consensus 644 ~~al~G~sGaGKSTLl~~l~g~~ 666 (1202)
-++|+|++|+|||||++.+.|..
T Consensus 4 ki~~vG~~~~GKSsli~~l~~~~ 26 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGGVE 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCCC-
T ss_pred EEEEECCCCCCHHHHHHHHcCcc
Confidence 37899999999999999998753
|
| >3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A* | Back alignment and structure |
|---|
Probab=92.87 E-value=0.049 Score=59.60 Aligned_cols=23 Identities=35% Similarity=0.676 Sum_probs=21.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCC
Q 000979 644 LTALMGVSGAGKTTLMDVLAGRK 666 (1202)
Q Consensus 644 ~~al~G~sGaGKSTLl~~l~g~~ 666 (1202)
.++|+|++|+|||||++.|+|..
T Consensus 5 kI~lvG~~nvGKSTL~n~L~g~~ 27 (272)
T 3b1v_A 5 EIALIGNPNSGKTSLFNLITGHN 27 (272)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 58999999999999999999853
|
| >2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14 | Back alignment and structure |
|---|
Probab=92.82 E-value=0.34 Score=50.85 Aligned_cols=53 Identities=13% Similarity=0.218 Sum_probs=44.2
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecC---------CCHHHHHhcceEEEEe
Q 000979 772 ANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQ---------PSIDIFEAFDELFLMK 830 (1202)
Q Consensus 772 ~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~---------~~~~~~~~~d~v~~l~ 830 (1202)
.+.+++++||.---.| +.+.++.+++.|..||++-++ ++.++.+++|.|.-|.
T Consensus 89 ~~~dvViIDEaQF~~~------v~el~~~l~~~gi~VI~~GL~~DF~~~~F~~~~~Ll~~AD~Vtelk 150 (234)
T 2orv_A 89 LGVAVIGIDEGQFFPD------IVEFCEAMANAGKTVIVAALDGTFQRKPFGAILNLVPLAESVVKLT 150 (234)
T ss_dssp TTCSEEEESSGGGCTT------HHHHHHHHHHTTCEEEEECCSBCTTSSBCTTGGGGGGGCSEEEECC
T ss_pred ccCCEEEEEchhhhhh------HHHHHHHHHhCCCEEEEEecccccccCCcccHHHHHHhcccEEeee
Confidence 6789999999987754 556666666689999999999 8888899999999885
|
| >2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=92.75 E-value=0.044 Score=56.15 Aligned_cols=23 Identities=26% Similarity=0.447 Sum_probs=21.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCC
Q 000979 644 LTALMGVSGAGKTTLMDVLAGRK 666 (1202)
Q Consensus 644 ~~al~G~sGaGKSTLl~~l~g~~ 666 (1202)
.++|+|++|+|||||++.|.+..
T Consensus 50 ~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 50 SIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68999999999999999998864
|
| >1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A* | Back alignment and structure |
|---|
Probab=92.74 E-value=0.051 Score=57.66 Aligned_cols=26 Identities=23% Similarity=0.377 Sum_probs=21.6
Q ss_pred eCCeEEEEEcCCCCCHHHHHHHHhCC
Q 000979 640 RPGVLTALMGVSGAGKTTLMDVLAGR 665 (1202)
Q Consensus 640 ~~Ge~~al~G~sGaGKSTLl~~l~g~ 665 (1202)
.++.++.|.|++||||||+.+.|+..
T Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~La~~ 30 (227)
T 1zd8_A 5 ARLLRAVIMGAPGSGKGTVSSRITTH 30 (227)
T ss_dssp --CCEEEEEECTTSSHHHHHHHHHHH
T ss_pred ccCcEEEEECCCCCCHHHHHHHHHHH
Confidence 34578999999999999999999853
|
| >2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=92.70 E-value=0.053 Score=54.34 Aligned_cols=23 Identities=39% Similarity=0.726 Sum_probs=20.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCC
Q 000979 644 LTALMGVSGAGKTTLMDVLAGRK 666 (1202)
Q Consensus 644 ~~al~G~sGaGKSTLl~~l~g~~ 666 (1202)
-++|+|++|+|||||++.+.+..
T Consensus 6 ki~i~G~~~vGKSsl~~~l~~~~ 28 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLASLFAGKQ 28 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC-
T ss_pred EEEEECCCCccHHHHHHHHhcCC
Confidence 47999999999999999998853
|
| >1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A* | Back alignment and structure |
|---|
Probab=92.66 E-value=0.05 Score=55.33 Aligned_cols=23 Identities=43% Similarity=0.621 Sum_probs=20.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCC
Q 000979 644 LTALMGVSGAGKTTLMDVLAGRK 666 (1202)
Q Consensus 644 ~~al~G~sGaGKSTLl~~l~g~~ 666 (1202)
.++|+|++|+|||||++.+.+..
T Consensus 18 ki~ivG~~~vGKSsL~~~l~~~~ 40 (181)
T 1fzq_A 18 RILLLGLDNAGKTTLLKQLASED 40 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHCCSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999998753
|
| >1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A* | Back alignment and structure |
|---|
Probab=92.61 E-value=0.049 Score=54.12 Aligned_cols=22 Identities=14% Similarity=0.329 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhCC
Q 000979 644 LTALMGVSGAGKTTLMDVLAGR 665 (1202)
Q Consensus 644 ~~al~G~sGaGKSTLl~~l~g~ 665 (1202)
-++++|++|+|||||++.+.+.
T Consensus 7 ~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4789999999999999999874
|
| >2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=92.60 E-value=0.056 Score=53.88 Aligned_cols=22 Identities=27% Similarity=0.453 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhCC
Q 000979 644 LTALMGVSGAGKTTLMDVLAGR 665 (1202)
Q Consensus 644 ~~al~G~sGaGKSTLl~~l~g~ 665 (1202)
-++++|++|+|||||++.+.+.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4799999999999999999874
|
| >3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A* | Back alignment and structure |
|---|
Probab=92.58 E-value=0.052 Score=56.49 Aligned_cols=22 Identities=23% Similarity=0.418 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhCC
Q 000979 644 LTALMGVSGAGKTTLMDVLAGR 665 (1202)
Q Consensus 644 ~~al~G~sGaGKSTLl~~l~g~ 665 (1202)
+++|.|++||||||+.+.|+..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~ 25 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAA 25 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 7999999999999999999864
|
| >2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A* | Back alignment and structure |
|---|
Probab=92.51 E-value=0.099 Score=53.63 Aligned_cols=35 Identities=29% Similarity=0.271 Sum_probs=27.8
Q ss_pred EeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCC
Q 000979 631 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRK 666 (1202)
Q Consensus 631 iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~ 666 (1202)
.+++.-.. ..|..++|+||+|+|||||...|+.+.
T Consensus 24 ~lHa~~v~-~~g~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 24 SMHGVLVD-IYGLGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp CEESEEEE-ETTEEEEEECCCTTTTHHHHHHHHTTT
T ss_pred eeeEEEEE-ECCEEEEEECCCCCCHHHHHHHHHHhC
Confidence 45665444 467899999999999999999998653
|
| >2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A | Back alignment and structure |
|---|
Probab=92.51 E-value=0.064 Score=55.64 Aligned_cols=25 Identities=36% Similarity=0.412 Sum_probs=21.6
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCC
Q 000979 641 PGVLTALMGVSGAGKTTLMDVLAGR 665 (1202)
Q Consensus 641 ~Ge~~al~G~sGaGKSTLl~~l~g~ 665 (1202)
.+-+++|.|++||||||+.+.|+..
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~~ 43 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAEK 43 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3458999999999999999999753
|
| >3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A* | Back alignment and structure |
|---|
Probab=92.50 E-value=0.059 Score=53.67 Aligned_cols=21 Identities=43% Similarity=0.676 Sum_probs=19.5
Q ss_pred EEEEcCCCCCHHHHHHHHhCC
Q 000979 645 TALMGVSGAGKTTLMDVLAGR 665 (1202)
Q Consensus 645 ~al~G~sGaGKSTLl~~l~g~ 665 (1202)
++|+|++|+|||||++.+.+.
T Consensus 5 i~ivG~~~~GKSsli~~l~~~ 25 (169)
T 3q85_A 5 VMLVGESGVGKSTLAGTFGGL 25 (169)
T ss_dssp EEEECSTTSSHHHHHHHHHCC
T ss_pred EEEECCCCCCHHHHHHHHHhc
Confidence 789999999999999999874
|
| >3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus} | Back alignment and structure |
|---|
Probab=92.43 E-value=0.061 Score=56.44 Aligned_cols=21 Identities=38% Similarity=0.539 Sum_probs=19.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhC
Q 000979 644 LTALMGVSGAGKTTLMDVLAG 664 (1202)
Q Consensus 644 ~~al~G~sGaGKSTLl~~l~g 664 (1202)
.++|.||+||||||+.+.|+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999964
|
| >1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A* | Back alignment and structure |
|---|
Probab=92.42 E-value=0.063 Score=53.82 Aligned_cols=23 Identities=30% Similarity=0.429 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCC
Q 000979 643 VLTALMGVSGAGKTTLMDVLAGR 665 (1202)
Q Consensus 643 e~~al~G~sGaGKSTLl~~l~g~ 665 (1202)
++++|.|+.||||||+.+.|+..
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~ 30 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLA 30 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 68999999999999999999753
|
| >3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=92.41 E-value=0.059 Score=54.25 Aligned_cols=23 Identities=30% Similarity=0.462 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCC
Q 000979 644 LTALMGVSGAGKTTLMDVLAGRK 666 (1202)
Q Consensus 644 ~~al~G~sGaGKSTLl~~l~g~~ 666 (1202)
-++|+|++|+|||||++.|.+..
T Consensus 11 ~i~v~G~~~~GKssl~~~l~~~~ 33 (181)
T 3tw8_B 11 KLLIIGDSGVGKSSLLLRFADNT 33 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHCSCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47999999999999999998753
|
| >3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A* | Back alignment and structure |
|---|
Probab=92.36 E-value=0.069 Score=58.04 Aligned_cols=25 Identities=36% Similarity=0.448 Sum_probs=22.3
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCC
Q 000979 641 PGVLTALMGVSGAGKTTLMDVLAGR 665 (1202)
Q Consensus 641 ~Ge~~al~G~sGaGKSTLl~~l~g~ 665 (1202)
++.++.|.|++||||||+.+.|+..
T Consensus 3 ~~~lIvl~G~pGSGKSTla~~La~~ 27 (260)
T 3a4m_A 3 DIMLIILTGLPGVGKSTFSKNLAKI 27 (260)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHH
Confidence 4678999999999999999999753
|
| >2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=92.35 E-value=0.055 Score=53.34 Aligned_cols=23 Identities=22% Similarity=0.488 Sum_probs=20.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCC
Q 000979 644 LTALMGVSGAGKTTLMDVLAGRK 666 (1202)
Q Consensus 644 ~~al~G~sGaGKSTLl~~l~g~~ 666 (1202)
.++++|++|+|||||++.+.+..
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999998754
|
| >3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0 | Back alignment and structure |
|---|
Probab=92.34 E-value=0.11 Score=52.82 Aligned_cols=22 Identities=18% Similarity=0.293 Sum_probs=18.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhCC
Q 000979 644 LTALMGVSGAGKTTLMDVLAGR 665 (1202)
Q Consensus 644 ~~al~G~sGaGKSTLl~~l~g~ 665 (1202)
-++|+|++|+|||||++.+.+.
T Consensus 22 ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 22 KVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp EEEEECCTTSCHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4899999999999999877653
|
| >1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R* | Back alignment and structure |
|---|
Probab=92.33 E-value=0.055 Score=53.52 Aligned_cols=22 Identities=23% Similarity=0.398 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhCC
Q 000979 644 LTALMGVSGAGKTTLMDVLAGR 665 (1202)
Q Consensus 644 ~~al~G~sGaGKSTLl~~l~g~ 665 (1202)
-++++|++|+|||||++.+.+.
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4799999999999999999864
|
| >1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A* | Back alignment and structure |
|---|
Probab=92.32 E-value=0.069 Score=55.43 Aligned_cols=24 Identities=29% Similarity=0.339 Sum_probs=21.0
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCC
Q 000979 642 GVLTALMGVSGAGKTTLMDVLAGR 665 (1202)
Q Consensus 642 Ge~~al~G~sGaGKSTLl~~l~g~ 665 (1202)
..+++|.|++||||||+.+.|+..
T Consensus 15 ~~~I~l~G~~GsGKsT~~~~L~~~ 38 (203)
T 1ukz_A 15 VSVIFVLGGPGAGKGTQCEKLVKD 38 (203)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 357999999999999999999743
|
| >2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ... | Back alignment and structure |
|---|
Probab=92.32 E-value=0.053 Score=53.54 Aligned_cols=23 Identities=26% Similarity=0.393 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCC
Q 000979 644 LTALMGVSGAGKTTLMDVLAGRK 666 (1202)
Q Consensus 644 ~~al~G~sGaGKSTLl~~l~g~~ 666 (1202)
.++++|++|+|||||++.+.+..
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~~ 27 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQNH 27 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 37999999999999999998753
|
| >1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A* | Back alignment and structure |
|---|
Probab=92.27 E-value=0.057 Score=53.48 Aligned_cols=22 Identities=23% Similarity=0.320 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhCC
Q 000979 644 LTALMGVSGAGKTTLMDVLAGR 665 (1202)
Q Consensus 644 ~~al~G~sGaGKSTLl~~l~g~ 665 (1202)
-++++|++|+|||||++.+.+.
T Consensus 6 ~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 6 KVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4799999999999999999874
|
| >1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1 | Back alignment and structure |
|---|
Probab=92.27 E-value=0.056 Score=57.07 Aligned_cols=25 Identities=16% Similarity=0.322 Sum_probs=21.6
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCC
Q 000979 641 PGVLTALMGVSGAGKTTLMDVLAGR 665 (1202)
Q Consensus 641 ~Ge~~al~G~sGaGKSTLl~~l~g~ 665 (1202)
.+.++.|+||+||||||+.+.|+..
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~ 28 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTK 28 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3457899999999999999999753
|
| >2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=92.27 E-value=0.066 Score=54.91 Aligned_cols=22 Identities=41% Similarity=0.519 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhCC
Q 000979 644 LTALMGVSGAGKTTLMDVLAGR 665 (1202)
Q Consensus 644 ~~al~G~sGaGKSTLl~~l~g~ 665 (1202)
+++|.|++||||||+.+.|+..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~ 23 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEY 23 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999753
|
| >1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A* | Back alignment and structure |
|---|
Probab=92.22 E-value=0.06 Score=55.19 Aligned_cols=23 Identities=39% Similarity=0.575 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCC
Q 000979 644 LTALMGVSGAGKTTLMDVLAGRK 666 (1202)
Q Consensus 644 ~~al~G~sGaGKSTLl~~l~g~~ 666 (1202)
.++|+|++|+|||||++.|.+..
T Consensus 25 ~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 1svi_A 25 EIALAGRSNVGKSSFINSLINRK 47 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTC-
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999864
|
| >1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A* | Back alignment and structure |
|---|
Probab=92.19 E-value=0.059 Score=54.21 Aligned_cols=23 Identities=30% Similarity=0.320 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCC
Q 000979 643 VLTALMGVSGAGKTTLMDVLAGR 665 (1202)
Q Consensus 643 e~~al~G~sGaGKSTLl~~l~g~ 665 (1202)
.+++|.|++||||||+.+.|+..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~ 25 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARA 25 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 36899999999999999999753
|
| >3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP} | Back alignment and structure |
|---|
Probab=92.12 E-value=0.016 Score=60.82 Aligned_cols=49 Identities=14% Similarity=-0.006 Sum_probs=36.4
Q ss_pred HHHHhCCcccccccccCCcccccCccccchhhHH-HHHhcCCeEeeeeCCC
Q 000979 50 YLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTG-EMMVGPALALFMDEIS 99 (1202)
Q Consensus 50 il~~lgL~~~~dT~VG~~~~~gLSGGQKqRvsIA-raLv~~P~ILlLDEpT 99 (1202)
.+..|.-.+..++.+++ .+.++||||+||+++| ++++.++.++++|||.
T Consensus 91 ~l~~l~~~~~i~~p~~d-~~~~~~~g~~~~v~~~~~~~i~eg~~~l~de~~ 140 (208)
T 3c8u_A 91 LCHALKHQERVIYPLFD-RARDIAIAGAAEVGPECRVAIIEGNYLLFDAPG 140 (208)
T ss_dssp HHHHHHHCSCEEEEEEE-TTTTEEEEEEEEECTTCCEEEEEESSTTBCSTT
T ss_pred HHHHHhcCCceecccCC-ccccCCCCCceEEcCCCcEEEECCceeccCCch
Confidence 44444333445556664 4456899999999999 9999999899999984
|
| >1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A* | Back alignment and structure |
|---|
Probab=92.12 E-value=0.061 Score=53.54 Aligned_cols=23 Identities=26% Similarity=0.449 Sum_probs=20.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCC
Q 000979 644 LTALMGVSGAGKTTLMDVLAGRK 666 (1202)
Q Consensus 644 ~~al~G~sGaGKSTLl~~l~g~~ 666 (1202)
-++++|++|+|||||++.+.+..
T Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 47999999999999999998854
|
| >3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A* | Back alignment and structure |
|---|
Probab=92.12 E-value=0.07 Score=56.00 Aligned_cols=22 Identities=36% Similarity=0.508 Sum_probs=19.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhCC
Q 000979 644 LTALMGVSGAGKTTLMDVLAGR 665 (1202)
Q Consensus 644 ~~al~G~sGaGKSTLl~~l~g~ 665 (1202)
.++|+||+||||||+.+.|+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEK 23 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3789999999999999999743
|
| >1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=92.12 E-value=0.057 Score=61.32 Aligned_cols=24 Identities=29% Similarity=0.596 Sum_probs=21.4
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCC
Q 000979 642 GVLTALMGVSGAGKTTLMDVLAGR 665 (1202)
Q Consensus 642 Ge~~al~G~sGaGKSTLl~~l~g~ 665 (1202)
|-.++|+|.+|+|||||+|.|+|.
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~~ 25 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTKA 25 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHCC
Confidence 346899999999999999999983
|
| >2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=92.11 E-value=0.073 Score=54.90 Aligned_cols=24 Identities=25% Similarity=0.564 Sum_probs=21.0
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCC
Q 000979 642 GVLTALMGVSGAGKTTLMDVLAGR 665 (1202)
Q Consensus 642 Ge~~al~G~sGaGKSTLl~~l~g~ 665 (1202)
.-+++|.|++||||||+.+.|+..
T Consensus 12 ~~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 12 HMVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHh
Confidence 357999999999999999999743
|
| >1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A* | Back alignment and structure |
|---|
Probab=92.10 E-value=0.061 Score=53.60 Aligned_cols=22 Identities=27% Similarity=0.326 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhCC
Q 000979 644 LTALMGVSGAGKTTLMDVLAGR 665 (1202)
Q Consensus 644 ~~al~G~sGaGKSTLl~~l~g~ 665 (1202)
-++++|++|+|||||++.+.+.
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 8 KVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4799999999999999999874
|
| >1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A | Back alignment and structure |
|---|
Probab=92.09 E-value=0.058 Score=53.66 Aligned_cols=23 Identities=35% Similarity=0.466 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCC
Q 000979 644 LTALMGVSGAGKTTLMDVLAGRK 666 (1202)
Q Consensus 644 ~~al~G~sGaGKSTLl~~l~g~~ 666 (1202)
-++++|++|+|||||++.+.+..
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1g16_A 5 KILLIGDSGVGKSCLLVRFVEDK 27 (170)
T ss_dssp EEEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 37999999999999999998754
|
| >2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=92.06 E-value=0.074 Score=53.21 Aligned_cols=21 Identities=29% Similarity=0.389 Sum_probs=19.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhC
Q 000979 644 LTALMGVSGAGKTTLMDVLAG 664 (1202)
Q Consensus 644 ~~al~G~sGaGKSTLl~~l~g 664 (1202)
.++|.|++||||||+.+.|+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999975
|
| >1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A* | Back alignment and structure |
|---|
Probab=92.06 E-value=0.075 Score=54.37 Aligned_cols=23 Identities=22% Similarity=0.289 Sum_probs=20.7
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhC
Q 000979 642 GVLTALMGVSGAGKTTLMDVLAG 664 (1202)
Q Consensus 642 Ge~~al~G~sGaGKSTLl~~l~g 664 (1202)
+.+++|.|++||||||+.+.|+.
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999999974
|
| >1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=92.06 E-value=0.063 Score=53.37 Aligned_cols=23 Identities=17% Similarity=0.355 Sum_probs=20.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCC
Q 000979 644 LTALMGVSGAGKTTLMDVLAGRK 666 (1202)
Q Consensus 644 ~~al~G~sGaGKSTLl~~l~g~~ 666 (1202)
-++++|++|+|||||++.+.+..
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 37899999999999999998743
|
| >1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D* | Back alignment and structure |
|---|
Probab=92.05 E-value=0.063 Score=53.23 Aligned_cols=22 Identities=23% Similarity=0.380 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhCC
Q 000979 644 LTALMGVSGAGKTTLMDVLAGR 665 (1202)
Q Consensus 644 ~~al~G~sGaGKSTLl~~l~g~ 665 (1202)
-++++|++|+|||||++.+.+.
T Consensus 5 ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 3799999999999999999874
|
| >2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A* | Back alignment and structure |
|---|
Probab=92.03 E-value=0.083 Score=53.09 Aligned_cols=25 Identities=36% Similarity=0.523 Sum_probs=21.7
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCCC
Q 000979 642 GVLTALMGVSGAGKTTLMDVLAGRK 666 (1202)
Q Consensus 642 Ge~~al~G~sGaGKSTLl~~l~g~~ 666 (1202)
.-.++|+|++|+|||||++.+.+..
T Consensus 8 ~~~i~v~G~~~~GKssl~~~l~~~~ 32 (178)
T 2lkc_A 8 PPVVTIMGHVDHGKTTLLDAIRHSK 32 (178)
T ss_dssp CCEEEEESCTTTTHHHHHHHHHTTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCc
Confidence 3468999999999999999998743
|
| >1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A* | Back alignment and structure |
|---|
Probab=92.02 E-value=0.063 Score=53.95 Aligned_cols=23 Identities=35% Similarity=0.559 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCC
Q 000979 644 LTALMGVSGAGKTTLMDVLAGRK 666 (1202)
Q Consensus 644 ~~al~G~sGaGKSTLl~~l~g~~ 666 (1202)
-++++|++|+|||||++.+.+..
T Consensus 9 ~i~v~G~~~~GKSsli~~l~~~~ 31 (177)
T 1wms_A 9 KVILLGDGGVGKSSLMNRYVTNK 31 (177)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47999999999999999998743
|
| >3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=92.01 E-value=0.079 Score=56.92 Aligned_cols=24 Identities=29% Similarity=0.329 Sum_probs=21.6
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhC
Q 000979 641 PGVLTALMGVSGAGKTTLMDVLAG 664 (1202)
Q Consensus 641 ~Ge~~al~G~sGaGKSTLl~~l~g 664 (1202)
++-.++|.||+||||||+.+.|+.
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 556899999999999999999974
|
| >3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A* | Back alignment and structure |
|---|
Probab=92.01 E-value=1.2 Score=60.24 Aligned_cols=33 Identities=27% Similarity=0.367 Sum_probs=27.4
Q ss_pred eecce--EEEeCCeEEEEEcCCCCCHHHHHHHHhC
Q 000979 632 LNGVS--GAFRPGVLTALMGVSGAGKTTLMDVLAG 664 (1202)
Q Consensus 632 L~~vs--~~i~~Ge~~al~G~sGaGKSTLl~~l~g 664 (1202)
|+.+- +-+++|+++.|.||+|+|||||.--++.
T Consensus 371 LD~lLg~GGl~~G~lilI~G~pGsGKTtLaLq~a~ 405 (1706)
T 3cmw_A 371 LDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIA 405 (1706)
T ss_dssp HHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHH
T ss_pred HHHHhccCCcCCCcEEEEEeCCCCCHHHHHHHHHH
Confidence 55554 3699999999999999999999877754
|
| >3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A | Back alignment and structure |
|---|
Probab=91.99 E-value=0.066 Score=54.69 Aligned_cols=23 Identities=39% Similarity=0.615 Sum_probs=20.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCC
Q 000979 644 LTALMGVSGAGKTTLMDVLAGRK 666 (1202)
Q Consensus 644 ~~al~G~sGaGKSTLl~~l~g~~ 666 (1202)
.++|+|++|+|||||++.+.+..
T Consensus 25 ~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 3pqc_A 25 EVAFVGRSNVGKSSLLNALFNRK 47 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCc
Confidence 58999999999999999998854
|
| >2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A* | Back alignment and structure |
|---|
Probab=91.98 E-value=0.062 Score=54.79 Aligned_cols=23 Identities=35% Similarity=0.499 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCC
Q 000979 643 VLTALMGVSGAGKTTLMDVLAGR 665 (1202)
Q Consensus 643 e~~al~G~sGaGKSTLl~~l~g~ 665 (1202)
.+++|+|++||||||+.+.|+..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~ 25 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKA 25 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999999753
|
| >1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=91.94 E-value=0.056 Score=54.73 Aligned_cols=23 Identities=35% Similarity=0.511 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCC
Q 000979 643 VLTALMGVSGAGKTTLMDVLAGR 665 (1202)
Q Consensus 643 e~~al~G~sGaGKSTLl~~l~g~ 665 (1202)
=.++|+|++|+|||||++.+.+.
T Consensus 19 ~~i~v~G~~~~GKssli~~l~~~ 41 (183)
T 1moz_A 19 LRILILGLDGAGKTTILYRLQIG 41 (183)
T ss_dssp EEEEEEEETTSSHHHHHHHTCCS
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 46899999999999999999753
|
| >1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A* | Back alignment and structure |
|---|
Probab=91.93 E-value=0.065 Score=54.00 Aligned_cols=23 Identities=39% Similarity=0.569 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCC
Q 000979 644 LTALMGVSGAGKTTLMDVLAGRK 666 (1202)
Q Consensus 644 ~~al~G~sGaGKSTLl~~l~g~~ 666 (1202)
-++++|++|+|||||++.+.+..
T Consensus 10 ~i~v~G~~~~GKSsli~~l~~~~ 32 (182)
T 1ky3_A 10 KVIILGDSGVGKTSLMHRYVNDK 32 (182)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 48999999999999999998743
|
| >2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=91.92 E-value=0.069 Score=54.34 Aligned_cols=22 Identities=41% Similarity=0.604 Sum_probs=20.0
Q ss_pred EEEEcCCCCCHHHHHHHHhCCC
Q 000979 645 TALMGVSGAGKTTLMDVLAGRK 666 (1202)
Q Consensus 645 ~al~G~sGaGKSTLl~~l~g~~ 666 (1202)
++|+|++|+|||||++.+.+..
T Consensus 4 i~v~G~~~~GKSsli~~l~~~~ 25 (190)
T 2cxx_A 4 IIFAGRSNVGKSTLIYRLTGKK 25 (190)
T ss_dssp EEEEEBTTSSHHHHHHHHHSCC
T ss_pred EEEECCCCCCHHHHHHHHhCcC
Confidence 7899999999999999998753
|
| >2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=91.90 E-value=0.26 Score=52.51 Aligned_cols=61 Identities=18% Similarity=0.095 Sum_probs=46.5
Q ss_pred cCCeEeeeeCCCccc--cHHHHHHHHHHHHHHhHhCCCEEEEEecCCChH-------HHhhhcceEEecC
Q 000979 88 GPALALFMDEISTGL--DSSTTFQIVNCLRQNIHINSGTAVISLLQPAPE-------TYDLFDDIILLSD 148 (1202)
Q Consensus 88 ~~P~ILlLDEpTSGL--Ds~sa~~vv~~L~~~a~~~~tTiIiaihQp~~s-------~~~~fD~IvvL~~ 148 (1202)
.+|+++++||+|+.+ |.....+.+..+.+.+++.+.||+++.|..+.. +.+.+|.|+.|..
T Consensus 127 ~~~~~vviD~~~~l~~~~~~~~~~~l~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~D~vi~L~~ 196 (247)
T 2dr3_A 127 INAKRVVVDSVTTLYINKPAMARSIILQLKRVLAGTGCTSIFVSQVSVGERGFGGPGVEHGVDGIIRLDL 196 (247)
T ss_dssp HTCCEEEEETSGGGTTTCGGGHHHHHHHHHHHHHHTTCEEEEEEECC----CCC-CCHHHHSSEEEEEEE
T ss_pred hCCCEEEECCchHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEecCCCCcccccccccceeEEEEEEEEE
Confidence 479999999999988 554556777888887777788999987766542 4677899999963
|
| >3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila} | Back alignment and structure |
|---|
Probab=91.83 E-value=0.071 Score=57.77 Aligned_cols=23 Identities=35% Similarity=0.546 Sum_probs=21.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCC
Q 000979 644 LTALMGVSGAGKTTLMDVLAGRK 666 (1202)
Q Consensus 644 ~~al~G~sGaGKSTLl~~l~g~~ 666 (1202)
.++|+|++|||||||++.|+|..
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~~ 25 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNAN 25 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 48999999999999999999864
|
| >1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1 | Back alignment and structure |
|---|
Probab=91.80 E-value=0.08 Score=58.87 Aligned_cols=26 Identities=38% Similarity=0.654 Sum_probs=22.4
Q ss_pred eCCeEEEEEcCCCCCHHHHHHHHhCCC
Q 000979 640 RPGVLTALMGVSGAGKTTLMDVLAGRK 666 (1202)
Q Consensus 640 ~~Ge~~al~G~sGaGKSTLl~~l~g~~ 666 (1202)
+.| .++|+|++|+|||||+|.|.|..
T Consensus 6 ~~g-~V~ivG~~nvGKSTLln~l~g~~ 31 (301)
T 1wf3_A 6 YSG-FVAIVGKPNVGKSTLLNNLLGVK 31 (301)
T ss_dssp EEE-EEEEECSTTSSHHHHHHHHHTSC
T ss_pred cCC-EEEEECCCCCCHHHHHHHHhCCc
Confidence 344 59999999999999999999853
|
| >3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli} | Back alignment and structure |
|---|
Probab=91.79 E-value=0.97 Score=61.76 Aligned_cols=33 Identities=27% Similarity=0.367 Sum_probs=27.5
Q ss_pred eecce--EEEeCCeEEEEEcCCCCCHHHHHHHHhC
Q 000979 632 LNGVS--GAFRPGVLTALMGVSGAGKTTLMDVLAG 664 (1202)
Q Consensus 632 L~~vs--~~i~~Ge~~al~G~sGaGKSTLl~~l~g 664 (1202)
|+.+- +-+++|+++.|.||+|+|||||.-.++.
T Consensus 371 LD~lLG~GGl~~G~lilI~G~pGsGKTtLaLqia~ 405 (2050)
T 3cmu_A 371 LDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIA 405 (2050)
T ss_dssp HHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHH
T ss_pred HHHHhccCCccCCcEEEEEeCCCCCHHHHHHHHHH
Confidence 55544 3699999999999999999999887764
|
| >2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A* | Back alignment and structure |
|---|
Probab=91.78 E-value=0.066 Score=53.92 Aligned_cols=22 Identities=23% Similarity=0.312 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhCC
Q 000979 644 LTALMGVSGAGKTTLMDVLAGR 665 (1202)
Q Consensus 644 ~~al~G~sGaGKSTLl~~l~g~ 665 (1202)
-++|+|++|+|||||++.+.+.
T Consensus 11 ~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 11 KLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4899999999999999999875
|
| >3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A* | Back alignment and structure |
|---|
Probab=91.73 E-value=0.072 Score=58.37 Aligned_cols=22 Identities=36% Similarity=0.471 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhCC
Q 000979 644 LTALMGVSGAGKTTLMDVLAGR 665 (1202)
Q Consensus 644 ~~al~G~sGaGKSTLl~~l~g~ 665 (1202)
.++|+|++|+|||||+|.|.|.
T Consensus 10 ~I~vvG~~g~GKSTLin~L~~~ 31 (274)
T 3t5d_A 10 TLMVVGESGLGKSTLINSLFLT 31 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHSSS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4899999999999999999874
|
| >3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=91.71 E-value=0.072 Score=56.46 Aligned_cols=27 Identities=33% Similarity=0.587 Sum_probs=20.7
Q ss_pred EeCCeEEEEEcCCCCCHHHHHHHHhCC
Q 000979 639 FRPGVLTALMGVSGAGKTTLMDVLAGR 665 (1202)
Q Consensus 639 i~~Ge~~al~G~sGaGKSTLl~~l~g~ 665 (1202)
..+|.++.|.|++||||||+.+.|+..
T Consensus 22 m~~g~~I~~eG~~GsGKsT~~~~l~~~ 48 (227)
T 3v9p_A 22 MARGKFITFEGIDGAGKTTHLQWFCDR 48 (227)
T ss_dssp -CCCCEEEEECCC---CHHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 457899999999999999999999754
|
| >1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A* | Back alignment and structure |
|---|
Probab=91.65 E-value=0.074 Score=52.82 Aligned_cols=22 Identities=27% Similarity=0.356 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhCC
Q 000979 644 LTALMGVSGAGKTTLMDVLAGR 665 (1202)
Q Consensus 644 ~~al~G~sGaGKSTLl~~l~g~ 665 (1202)
-++++|++|+|||||++.+.+.
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4799999999999999999864
|
| >2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A* | Back alignment and structure |
|---|
Probab=91.63 E-value=0.082 Score=53.13 Aligned_cols=22 Identities=27% Similarity=0.436 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhCC
Q 000979 644 LTALMGVSGAGKTTLMDVLAGR 665 (1202)
Q Consensus 644 ~~al~G~sGaGKSTLl~~l~g~ 665 (1202)
-++|+|++|+|||||++.+.+.
T Consensus 8 ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 8 KIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHGG
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 4799999999999999999874
|
| >4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A | Back alignment and structure |
|---|
Probab=91.60 E-value=0.074 Score=61.63 Aligned_cols=44 Identities=14% Similarity=0.182 Sum_probs=36.4
Q ss_pred CCCEEEEeCCCCCCC---HHHHHHHHHHHHHHHhCCCEEEEEecCCC
Q 000979 773 NPSIIFMDEPTSGLD---ARAAAIVMRTVRNTVDTGRTVVCTIHQPS 816 (1202)
Q Consensus 773 ~p~illlDEPtsgLD---~~~~~~v~~~l~~~~~~g~tvi~~~H~~~ 816 (1202)
.|.++++||.=.=++ +.....+.+.+++.++.|..++++||.|+
T Consensus 262 ~~~~i~iDEa~~~~~~~~~~~~~~l~~~~~~~Rk~g~~~~~~tQ~~~ 308 (392)
T 4ag6_A 262 ERTVLVVDEAWMLVDPQTPQAIAFLRDTSKRIRKYNGSLIVISQNVI 308 (392)
T ss_dssp TTCEEEETTGGGGCCTTCTHHHHHHHHHHHHGGGGTCEEEEEESCGG
T ss_pred ccEEEEEecHHHHhCcCchHHHHHHHHHHHHhhhhCeEEEEEcCCHH
Confidence 578999999988774 66777788888887777899999999886
|
| >3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens} | Back alignment and structure |
|---|
Probab=91.59 E-value=0.076 Score=54.78 Aligned_cols=22 Identities=41% Similarity=0.614 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhCC
Q 000979 644 LTALMGVSGAGKTTLMDVLAGR 665 (1202)
Q Consensus 644 ~~al~G~sGaGKSTLl~~l~g~ 665 (1202)
.++|+|++|+|||||++.++|.
T Consensus 25 ki~vvG~~~vGKSsLi~~l~~~ 46 (195)
T 3cbq_A 25 KVMLVGESGVGKSTLAGTFGGL 46 (195)
T ss_dssp EEEEECSTTSSHHHHHHHTCCE
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 5899999999999999999763
|
| >2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=91.57 E-value=0.075 Score=54.43 Aligned_cols=22 Identities=36% Similarity=0.578 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhCC
Q 000979 644 LTALMGVSGAGKTTLMDVLAGR 665 (1202)
Q Consensus 644 ~~al~G~sGaGKSTLl~~l~g~ 665 (1202)
-++|+|++|+|||||++.|.+.
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 27 KVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 4799999999999999999874
|
| >1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A* | Back alignment and structure |
|---|
Probab=91.54 E-value=0.077 Score=52.86 Aligned_cols=22 Identities=36% Similarity=0.525 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhCC
Q 000979 644 LTALMGVSGAGKTTLMDVLAGR 665 (1202)
Q Consensus 644 ~~al~G~sGaGKSTLl~~l~g~ 665 (1202)
.++++|++|+|||||++.+.+.
T Consensus 9 ~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 9 RILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999764
|
| >4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A* | Back alignment and structure |
|---|
Probab=91.54 E-value=0.076 Score=53.94 Aligned_cols=23 Identities=26% Similarity=0.394 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCC
Q 000979 644 LTALMGVSGAGKTTLMDVLAGRK 666 (1202)
Q Consensus 644 ~~al~G~sGaGKSTLl~~l~g~~ 666 (1202)
-++++|++|+|||||++.|.+..
T Consensus 6 ki~v~G~~~~GKSsli~~l~~~~ 28 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLIQNH 28 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 47999999999999999998743
|
| >3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A* | Back alignment and structure |
|---|
Probab=91.50 E-value=0.089 Score=58.73 Aligned_cols=23 Identities=39% Similarity=0.661 Sum_probs=21.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCC
Q 000979 644 LTALMGVSGAGKTTLMDVLAGRK 666 (1202)
Q Consensus 644 ~~al~G~sGaGKSTLl~~l~g~~ 666 (1202)
.++|+|++|+|||||+|.|.|..
T Consensus 12 ~v~ivG~~nvGKSTLin~l~g~~ 34 (308)
T 3iev_A 12 YVAIVGKPNVGKSTLLNNLLGTK 34 (308)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 89999999999999999999854
|
| >1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ... | Back alignment and structure |
|---|
Probab=91.48 E-value=0.079 Score=52.40 Aligned_cols=21 Identities=33% Similarity=0.453 Sum_probs=19.3
Q ss_pred EEEEcCCCCCHHHHHHHHhCC
Q 000979 645 TALMGVSGAGKTTLMDVLAGR 665 (1202)
Q Consensus 645 ~al~G~sGaGKSTLl~~l~g~ 665 (1202)
++++|++|+|||||++.+.+.
T Consensus 3 i~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 3 ILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 789999999999999999763
|
| >2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A | Back alignment and structure |
|---|
Probab=91.47 E-value=0.072 Score=60.82 Aligned_cols=21 Identities=29% Similarity=0.618 Sum_probs=19.6
Q ss_pred EEEEcCCCCCHHHHHHHHhCC
Q 000979 645 TALMGVSGAGKTTLMDVLAGR 665 (1202)
Q Consensus 645 ~al~G~sGaGKSTLl~~l~g~ 665 (1202)
++|+|++|+|||||++.|++.
T Consensus 4 v~IVG~pnvGKSTL~n~L~~~ 24 (368)
T 2dby_A 4 VGIVGLPNVGKSTLFNALTRA 24 (368)
T ss_dssp EEEECCSSSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 799999999999999999874
|
| >4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A* | Back alignment and structure |
|---|
Probab=91.45 E-value=0.11 Score=54.66 Aligned_cols=26 Identities=46% Similarity=0.621 Sum_probs=22.9
Q ss_pred eCCeEEEEEcCCCCCHHHHHHHHhCC
Q 000979 640 RPGVLTALMGVSGAGKTTLMDVLAGR 665 (1202)
Q Consensus 640 ~~Ge~~al~G~sGaGKSTLl~~l~g~ 665 (1202)
.+|.++.|.|++||||||+.+.|+..
T Consensus 4 m~g~~i~~eG~~gsGKsT~~~~l~~~ 29 (213)
T 4edh_A 4 MTGLFVTLEGPEGAGKSTNRDYLAER 29 (213)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCceEEEEEcCCCCCHHHHHHHHHHH
Confidence 46889999999999999999999753
|
| >1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A* | Back alignment and structure |
|---|
Probab=91.43 E-value=0.091 Score=56.74 Aligned_cols=22 Identities=18% Similarity=0.371 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhC
Q 000979 643 VLTALMGVSGAGKTTLMDVLAG 664 (1202)
Q Consensus 643 e~~al~G~sGaGKSTLl~~l~g 664 (1202)
-+++|.|++||||||+.+.|+.
T Consensus 23 ~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 23 FLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999976
|
| >1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=91.41 E-value=0.055 Score=59.80 Aligned_cols=24 Identities=25% Similarity=0.414 Sum_probs=18.3
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhC
Q 000979 641 PGVLTALMGVSGAGKTTLMDVLAG 664 (1202)
Q Consensus 641 ~Ge~~al~G~sGaGKSTLl~~l~g 664 (1202)
++-+++|.||+||||||+.+.|+.
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~ 27 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQ 27 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 345899999999999999999975
|
| >3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A* | Back alignment and structure |
|---|
Probab=91.39 E-value=0.08 Score=53.93 Aligned_cols=22 Identities=27% Similarity=0.342 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhCC
Q 000979 644 LTALMGVSGAGKTTLMDVLAGR 665 (1202)
Q Consensus 644 ~~al~G~sGaGKSTLl~~l~g~ 665 (1202)
-++|+|++|+|||||++.+.+.
T Consensus 13 ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 13 KFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4799999999999999999874
|
| >3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=91.34 E-value=0.081 Score=54.38 Aligned_cols=22 Identities=32% Similarity=0.442 Sum_probs=20.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhCC
Q 000979 644 LTALMGVSGAGKTTLMDVLAGR 665 (1202)
Q Consensus 644 ~~al~G~sGaGKSTLl~~l~g~ 665 (1202)
-++|+|++|+|||||++.|.+.
T Consensus 9 ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 9 KTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4899999999999999999985
|
| >3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A | Back alignment and structure |
|---|
Probab=91.33 E-value=0.1 Score=55.44 Aligned_cols=44 Identities=7% Similarity=0.121 Sum_probs=30.4
Q ss_pred hCCCEEEEeCCCCCC-CHHHHHHHHHHHHHHHhCCCE-EEEEecCC
Q 000979 772 ANPSIIFMDEPTSGL-DARAAAIVMRTVRNTVDTGRT-VVCTIHQP 815 (1202)
Q Consensus 772 ~~p~illlDEPtsgL-D~~~~~~v~~~l~~~~~~g~t-vi~~~H~~ 815 (1202)
.+|++|++||.-.-- +......+.+.+++..+.+.. +|++++..
T Consensus 103 ~~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~ 148 (242)
T 3bos_A 103 EQFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASAS 148 (242)
T ss_dssp GGSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESSC
T ss_pred cCCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCCC
Confidence 578999999965432 233367788888877666655 77777754
|
| >2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A* | Back alignment and structure |
|---|
Probab=91.26 E-value=0.19 Score=52.54 Aligned_cols=24 Identities=33% Similarity=0.368 Sum_probs=21.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCC
Q 000979 644 LTALMGVSGAGKTTLMDVLAGRKT 667 (1202)
Q Consensus 644 ~~al~G~sGaGKSTLl~~l~g~~~ 667 (1202)
-++|+|++|+|||||++.+.+...
T Consensus 27 ki~vvG~~~~GKSsLi~~l~~~~~ 50 (217)
T 2f7s_A 27 KLLALGDSGVGKTTFLYRYTDNKF 50 (217)
T ss_dssp EEEEESCTTSSHHHHHHHHHCSCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCCC
Confidence 479999999999999999998543
|
| >2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=91.24 E-value=0.086 Score=53.08 Aligned_cols=23 Identities=35% Similarity=0.427 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCC
Q 000979 644 LTALMGVSGAGKTTLMDVLAGRK 666 (1202)
Q Consensus 644 ~~al~G~sGaGKSTLl~~l~g~~ 666 (1202)
-++++|++|+|||||++.+.+..
T Consensus 12 ~i~v~G~~~~GKssli~~l~~~~ 34 (180)
T 2g6b_A 12 KVMLVGDSGVGKTCLLVRFKDGA 34 (180)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 48999999999999999998743
|
| >2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A* | Back alignment and structure |
|---|
Probab=91.23 E-value=0.082 Score=53.08 Aligned_cols=22 Identities=23% Similarity=0.338 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhCC
Q 000979 644 LTALMGVSGAGKTTLMDVLAGR 665 (1202)
Q Consensus 644 ~~al~G~sGaGKSTLl~~l~g~ 665 (1202)
-++|+|++|+|||||++.+.+.
T Consensus 16 ~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 16 KLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4799999999999999999864
|
| >1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A* | Back alignment and structure |
|---|
Probab=91.17 E-value=0.1 Score=53.03 Aligned_cols=25 Identities=28% Similarity=0.561 Sum_probs=21.6
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCCC
Q 000979 642 GVLTALMGVSGAGKTTLMDVLAGRK 666 (1202)
Q Consensus 642 Ge~~al~G~sGaGKSTLl~~l~g~~ 666 (1202)
.=.++++|++|+|||||++.+.+..
T Consensus 18 ~~~i~v~G~~~~GKssl~~~l~~~~ 42 (186)
T 1ksh_A 18 ELRLLMLGLDNAGKTTILKKFNGED 42 (186)
T ss_dssp CEEEEEECSTTSSHHHHHHHHTTCC
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCC
Confidence 3468999999999999999998743
|
| >3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A | Back alignment and structure |
|---|
Probab=91.15 E-value=0.096 Score=56.79 Aligned_cols=23 Identities=43% Similarity=0.681 Sum_probs=21.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCC
Q 000979 644 LTALMGVSGAGKTTLMDVLAGRK 666 (1202)
Q Consensus 644 ~~al~G~sGaGKSTLl~~l~g~~ 666 (1202)
.++|+|++|+|||||++.|+|..
T Consensus 7 kI~lvG~~nvGKTsL~n~l~g~~ 29 (258)
T 3a1s_A 7 KVALAGCPNVGKTSLFNALTGTK 29 (258)
T ss_dssp EEEEECCTTSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 48999999999999999999864
|
| >3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A* | Back alignment and structure |
|---|
Probab=91.13 E-value=0.088 Score=53.84 Aligned_cols=23 Identities=22% Similarity=0.199 Sum_probs=20.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCC
Q 000979 644 LTALMGVSGAGKTTLMDVLAGRK 666 (1202)
Q Consensus 644 ~~al~G~sGaGKSTLl~~l~g~~ 666 (1202)
-++|+|++|+|||||++.+.|..
T Consensus 16 ki~vvG~~~~GKssL~~~l~~~~ 38 (198)
T 3t1o_A 16 KIVYYGPGLSGKTTNLKWIYSKV 38 (198)
T ss_dssp EEEEECSTTSSHHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHHhhc
Confidence 47899999999999999999854
|
| >2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A* | Back alignment and structure |
|---|
Probab=91.12 E-value=0.1 Score=55.17 Aligned_cols=21 Identities=24% Similarity=0.392 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhC
Q 000979 644 LTALMGVSGAGKTTLMDVLAG 664 (1202)
Q Consensus 644 ~~al~G~sGaGKSTLl~~l~g 664 (1202)
++.|.|++||||||+.+.|+-
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKD 22 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999974
|
| >2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus} | Back alignment and structure |
|---|
Probab=91.12 E-value=0.095 Score=57.66 Aligned_cols=21 Identities=33% Similarity=0.624 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHh
Q 000979 643 VLTALMGVSGAGKTTLMDVLA 663 (1202)
Q Consensus 643 e~~al~G~sGaGKSTLl~~l~ 663 (1202)
-+++|.|++||||||+.+.|+
T Consensus 76 ~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 76 YVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp EEEEEEECTTSCHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHH
Confidence 579999999999999999998
|
| >3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni} | Back alignment and structure |
|---|
Probab=91.11 E-value=0.094 Score=55.10 Aligned_cols=27 Identities=22% Similarity=0.372 Sum_probs=22.9
Q ss_pred EeCCeEEEEEcCCCCCHHHHHHHHhCC
Q 000979 639 FRPGVLTALMGVSGAGKTTLMDVLAGR 665 (1202)
Q Consensus 639 i~~Ge~~al~G~sGaGKSTLl~~l~g~ 665 (1202)
.++..++.|+||+||||+|..+.|+-.
T Consensus 26 ~~k~kiI~llGpPGsGKgTqa~~L~~~ 52 (217)
T 3umf_A 26 LAKAKVIFVLGGPGSGKGTQCEKLVQK 52 (217)
T ss_dssp TTSCEEEEEECCTTCCHHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 345578999999999999999999853
|
| >3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A* | Back alignment and structure |
|---|
Probab=91.09 E-value=0.09 Score=53.62 Aligned_cols=23 Identities=26% Similarity=0.393 Sum_probs=20.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCC
Q 000979 644 LTALMGVSGAGKTTLMDVLAGRK 666 (1202)
Q Consensus 644 ~~al~G~sGaGKSTLl~~l~g~~ 666 (1202)
.++++|++|+|||||++.|.+..
T Consensus 23 ki~vvG~~~~GKSsli~~l~~~~ 45 (190)
T 3con_A 23 KLVVVGAGGVGKSALTIQLIQNH 45 (190)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 48999999999999999998753
|
| >1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A* | Back alignment and structure |
|---|
Probab=91.08 E-value=0.091 Score=52.73 Aligned_cols=23 Identities=26% Similarity=0.489 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCC
Q 000979 644 LTALMGVSGAGKTTLMDVLAGRK 666 (1202)
Q Consensus 644 ~~al~G~sGaGKSTLl~~l~g~~ 666 (1202)
-++|+|++|+|||||++.+.+..
T Consensus 17 ~i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 17 KYIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 48999999999999999998753
|
| >2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A* | Back alignment and structure |
|---|
Probab=91.07 E-value=0.091 Score=53.17 Aligned_cols=22 Identities=23% Similarity=0.320 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhCC
Q 000979 644 LTALMGVSGAGKTTLMDVLAGR 665 (1202)
Q Consensus 644 ~~al~G~sGaGKSTLl~~l~g~ 665 (1202)
-++|+|++|+|||||++.+.+.
T Consensus 20 ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 20 KVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhhC
Confidence 4899999999999999999874
|
| >3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II} | Back alignment and structure |
|---|
Probab=91.04 E-value=0.099 Score=54.99 Aligned_cols=24 Identities=25% Similarity=0.367 Sum_probs=21.2
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCC
Q 000979 642 GVLTALMGVSGAGKTTLMDVLAGR 665 (1202)
Q Consensus 642 Ge~~al~G~sGaGKSTLl~~l~g~ 665 (1202)
|-.+.|+|++||||||+.+.|+..
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La~~ 28 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIKKE 28 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHH
Confidence 457899999999999999999753
|
| >2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B* | Back alignment and structure |
|---|
Probab=90.92 E-value=0.095 Score=52.82 Aligned_cols=22 Identities=32% Similarity=0.430 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhCC
Q 000979 644 LTALMGVSGAGKTTLMDVLAGR 665 (1202)
Q Consensus 644 ~~al~G~sGaGKSTLl~~l~g~ 665 (1202)
-++++|++|+|||||++.+.+.
T Consensus 14 ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 14 KLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4899999999999999999874
|
| >3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A* | Back alignment and structure |
|---|
Probab=90.92 E-value=0.098 Score=57.29 Aligned_cols=23 Identities=39% Similarity=0.670 Sum_probs=21.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCC
Q 000979 644 LTALMGVSGAGKTTLMDVLAGRK 666 (1202)
Q Consensus 644 ~~al~G~sGaGKSTLl~~l~g~~ 666 (1202)
.++|+|++|||||||+|.|+|..
T Consensus 5 ~I~lvG~~n~GKSTLin~l~g~~ 27 (274)
T 3i8s_A 5 TIGLIGNPNSGKTTLFNQLTGSR 27 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999864
|
| >1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=90.91 E-value=0.094 Score=54.92 Aligned_cols=23 Identities=26% Similarity=0.447 Sum_probs=20.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCC
Q 000979 644 LTALMGVSGAGKTTLMDVLAGRK 666 (1202)
Q Consensus 644 ~~al~G~sGaGKSTLl~~l~g~~ 666 (1202)
.++|+|++|+|||||++.|.+..
T Consensus 14 ~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 14 SIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999998754
|
| >2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=90.89 E-value=0.11 Score=53.32 Aligned_cols=23 Identities=30% Similarity=0.585 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCC
Q 000979 644 LTALMGVSGAGKTTLMDVLAGRK 666 (1202)
Q Consensus 644 ~~al~G~sGaGKSTLl~~l~g~~ 666 (1202)
-++|+|++|+|||||++.|.+..
T Consensus 28 ki~vvG~~~~GKSsLi~~l~~~~ 50 (192)
T 2il1_A 28 QVIIIGSRGVGKTSLMERFTDDT 50 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHCC--
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47999999999999999998753
|
| >2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A | Back alignment and structure |
|---|
Probab=90.87 E-value=0.099 Score=56.63 Aligned_cols=23 Identities=22% Similarity=0.419 Sum_probs=20.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCC
Q 000979 644 LTALMGVSGAGKTTLMDVLAGRK 666 (1202)
Q Consensus 644 ~~al~G~sGaGKSTLl~~l~g~~ 666 (1202)
.++|+|++|+|||||++.|.|..
T Consensus 24 ~I~lvG~~g~GKStl~n~l~~~~ 46 (260)
T 2xtp_A 24 RIILVGKTGTGKSAAGNSILRKQ 46 (260)
T ss_dssp EEEEEECTTSCHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999853
|
| >2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A* | Back alignment and structure |
|---|
Probab=90.84 E-value=0.093 Score=53.20 Aligned_cols=22 Identities=23% Similarity=0.472 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhCC
Q 000979 644 LTALMGVSGAGKTTLMDVLAGR 665 (1202)
Q Consensus 644 ~~al~G~sGaGKSTLl~~l~g~ 665 (1202)
-++|+|++|+|||||++.+.+.
T Consensus 12 ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 12 KFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4799999999999999999874
|
| >3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A* | Back alignment and structure |
|---|
Probab=90.84 E-value=0.12 Score=55.18 Aligned_cols=25 Identities=28% Similarity=0.509 Sum_probs=22.8
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCC
Q 000979 641 PGVLTALMGVSGAGKTTLMDVLAGR 665 (1202)
Q Consensus 641 ~Ge~~al~G~sGaGKSTLl~~l~g~ 665 (1202)
+|.+++|.|++||||||+.+.|+..
T Consensus 26 ~~~~i~~eG~~GsGKsT~~~~l~~~ 50 (236)
T 3lv8_A 26 NAKFIVIEGLEGAGKSTAIQVVVET 50 (236)
T ss_dssp CCCEEEEEESTTSCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999999999763
|
| >2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A* | Back alignment and structure |
|---|
Probab=90.83 E-value=0.098 Score=53.36 Aligned_cols=23 Identities=30% Similarity=0.340 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCC
Q 000979 644 LTALMGVSGAGKTTLMDVLAGRK 666 (1202)
Q Consensus 644 ~~al~G~sGaGKSTLl~~l~g~~ 666 (1202)
-++|+|++|+|||||++.+.+..
T Consensus 24 ki~vvG~~~~GKSsli~~l~~~~ 46 (189)
T 2gf9_A 24 KLLLIGNSSVGKTSFLFRYADDS 46 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47999999999999999998753
|
| >3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus} | Back alignment and structure |
|---|
Probab=90.78 E-value=0.16 Score=56.76 Aligned_cols=27 Identities=37% Similarity=0.430 Sum_probs=23.7
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCCC
Q 000979 641 PGVLTALMGVSGAGKTTLMDVLAGRKT 667 (1202)
Q Consensus 641 ~Ge~~al~G~sGaGKSTLl~~l~g~~~ 667 (1202)
++.++.|+||+|||||||...|+....
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~~l~ 65 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAAHFP 65 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHTTSC
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHCC
Confidence 456899999999999999999997653
|
| >1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B* | Back alignment and structure |
|---|
Probab=90.75 E-value=0.096 Score=53.22 Aligned_cols=22 Identities=36% Similarity=0.496 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhCC
Q 000979 644 LTALMGVSGAGKTTLMDVLAGR 665 (1202)
Q Consensus 644 ~~al~G~sGaGKSTLl~~l~g~ 665 (1202)
-++++|++|+|||||++.+.+.
T Consensus 9 ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 9 KIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4799999999999999999874
|
| >2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens} | Back alignment and structure |
|---|
Probab=90.70 E-value=0.1 Score=53.92 Aligned_cols=22 Identities=23% Similarity=0.320 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhCC
Q 000979 644 LTALMGVSGAGKTTLMDVLAGR 665 (1202)
Q Consensus 644 ~~al~G~sGaGKSTLl~~l~g~ 665 (1202)
-++|+|++|+|||||++.+.+.
T Consensus 16 ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 16 KVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4799999999999999999874
|
| >2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=90.69 E-value=0.097 Score=53.65 Aligned_cols=23 Identities=22% Similarity=0.443 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCC
Q 000979 644 LTALMGVSGAGKTTLMDVLAGRK 666 (1202)
Q Consensus 644 ~~al~G~sGaGKSTLl~~l~g~~ 666 (1202)
-++|+|++|+|||||++.+.+..
T Consensus 25 ki~vvG~~~~GKSsli~~l~~~~ 47 (192)
T 2fg5_A 25 KVCLLGDTGVGKSSIVCRFVQDH 47 (192)
T ss_dssp EEEEEECTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 47999999999999999998753
|
| >2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=90.68 E-value=0.1 Score=53.37 Aligned_cols=23 Identities=26% Similarity=0.462 Sum_probs=20.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCC
Q 000979 644 LTALMGVSGAGKTTLMDVLAGRK 666 (1202)
Q Consensus 644 ~~al~G~sGaGKSTLl~~l~g~~ 666 (1202)
.++|+|++|+|||||++.+.+..
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~~ 45 (190)
T 2h57_A 23 HVLCLGLDNSGKTTIINKLKPSN 45 (190)
T ss_dssp EEEEEECTTSSHHHHHHHTSCGG
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999998754
|
| >3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C | Back alignment and structure |
|---|
Probab=90.67 E-value=0.12 Score=52.10 Aligned_cols=23 Identities=22% Similarity=0.258 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCC
Q 000979 644 LTALMGVSGAGKTTLMDVLAGRK 666 (1202)
Q Consensus 644 ~~al~G~sGaGKSTLl~~l~g~~ 666 (1202)
-++++|++|+|||||++.+.+..
T Consensus 10 ki~v~G~~~~GKssl~~~~~~~~ 32 (182)
T 3bwd_D 10 KCVTVGDGAVGKTCLLISYTSNT 32 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 48999999999999999998653
|
| >2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A* | Back alignment and structure |
|---|
Probab=90.65 E-value=0.1 Score=53.56 Aligned_cols=21 Identities=43% Similarity=0.784 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhC
Q 000979 644 LTALMGVSGAGKTTLMDVLAG 664 (1202)
Q Consensus 644 ~~al~G~sGaGKSTLl~~l~g 664 (1202)
-++|+|++|+|||||++.+.|
T Consensus 8 kv~lvG~~~vGKSsL~~~~~~ 28 (192)
T 2cjw_A 8 RVVLIGEQGVGKSTLANIFAG 28 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 489999999999999999986
|
| >1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B* | Back alignment and structure |
|---|
Probab=90.64 E-value=0.1 Score=53.97 Aligned_cols=23 Identities=39% Similarity=0.645 Sum_probs=20.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCC
Q 000979 644 LTALMGVSGAGKTTLMDVLAGRK 666 (1202)
Q Consensus 644 ~~al~G~sGaGKSTLl~~l~g~~ 666 (1202)
-++|+|++|+|||||++.+.+..
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (207)
T 1vg8_A 10 KVIILGDSGVGKTSLMNQYVNKK 32 (207)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 48999999999999999998753
|
| >4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A* | Back alignment and structure |
|---|
Probab=90.64 E-value=0.11 Score=57.72 Aligned_cols=26 Identities=35% Similarity=0.420 Sum_probs=22.7
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCC
Q 000979 641 PGVLTALMGVSGAGKTTLMDVLAGRK 666 (1202)
Q Consensus 641 ~Ge~~al~G~sGaGKSTLl~~l~g~~ 666 (1202)
|...+.|.||+|+||||+.+.|++..
T Consensus 46 ~~~~~ll~G~~GtGKt~la~~la~~~ 71 (311)
T 4fcw_A 46 PIGSFLFLGPTGVGKTELAKTLAATL 71 (311)
T ss_dssp CSEEEEEESCSSSSHHHHHHHHHHHH
T ss_pred CceEEEEECCCCcCHHHHHHHHHHHH
Confidence 34689999999999999999998753
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| 1202 | ||||
| d1l2ta_ | 230 | c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jann | 1e-28 | |
| d1l2ta_ | 230 | c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jann | 1e-07 | |
| d1g6ha_ | 254 | c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jann | 9e-28 | |
| d1g6ha_ | 254 | c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jann | 1e-09 | |
| d1ji0a_ | 240 | c.37.1.12 (A:) Branched chain aminoacid ABC transp | 3e-27 | |
| d1ji0a_ | 240 | c.37.1.12 (A:) Branched chain aminoacid ABC transp | 6e-08 | |
| d1v43a3 | 239 | c.37.1.12 (A:7-245) Hypothetical protein PH0022, N | 8e-27 | |
| d1v43a3 | 239 | c.37.1.12 (A:7-245) Hypothetical protein PH0022, N | 8e-12 | |
| d1b0ua_ | 258 | c.37.1.12 (A:) ATP-binding subunit of the histidin | 3e-25 | |
| d1b0ua_ | 258 | c.37.1.12 (A:) ATP-binding subunit of the histidin | 3e-08 | |
| d3dhwc1 | 240 | c.37.1.12 (C:1-240) Methionine import ATP-binding | 4e-25 | |
| d3dhwc1 | 240 | c.37.1.12 (C:1-240) Methionine import ATP-binding | 2e-09 | |
| d1sgwa_ | 200 | c.37.1.12 (A:) Putative ABC transporter PF0895 {Py | 7e-25 | |
| d1vpla_ | 238 | c.37.1.12 (A:) Putative ABC transporter TM0544 {Th | 1e-24 | |
| d1vpla_ | 238 | c.37.1.12 (A:) Putative ABC transporter TM0544 {Th | 9e-10 | |
| d1r0wa_ | 281 | c.37.1.12 (A:) Cystic fibrosis transmembrane condu | 3e-24 | |
| d1r0wa_ | 281 | c.37.1.12 (A:) Cystic fibrosis transmembrane condu | 7e-10 | |
| d3b60a1 | 253 | c.37.1.12 (A:329-581) Multidrug resistance ABC tra | 4e-23 | |
| d3b60a1 | 253 | c.37.1.12 (A:329-581) Multidrug resistance ABC tra | 5e-10 | |
| d1l7vc_ | 231 | c.37.1.12 (C:) ABC transporter involved in vitamin | 8e-23 | |
| d1l7vc_ | 231 | c.37.1.12 (C:) ABC transporter involved in vitamin | 4e-06 | |
| d2pmka1 | 241 | c.37.1.12 (A:467-707) Haemolysin B ATP-binding pro | 3e-22 | |
| d2pmka1 | 241 | c.37.1.12 (A:467-707) Haemolysin B ATP-binding pro | 1e-07 | |
| d2awna2 | 232 | c.37.1.12 (A:4-235) Maltose transport protein MalK | 2e-21 | |
| d2awna2 | 232 | c.37.1.12 (A:4-235) Maltose transport protein MalK | 4e-08 | |
| d2hyda1 | 255 | c.37.1.12 (A:324-578) Putative multidrug export AT | 3e-21 | |
| d2hyda1 | 255 | c.37.1.12 (A:324-578) Putative multidrug export AT | 2e-08 | |
| d1jj7a_ | 251 | c.37.1.12 (A:) Peptide transporter Tap1, C-termina | 4e-21 | |
| d1jj7a_ | 251 | c.37.1.12 (A:) Peptide transporter Tap1, C-termina | 1e-09 | |
| d1mv5a_ | 242 | c.37.1.12 (A:) Multidrug resistance ABC transporte | 1e-19 | |
| d1mv5a_ | 242 | c.37.1.12 (A:) Multidrug resistance ABC transporte | 2e-06 | |
| d1g2912 | 240 | c.37.1.12 (1:1-240) Maltose transport protein MalK | 1e-19 | |
| d1g2912 | 240 | c.37.1.12 (1:1-240) Maltose transport protein MalK | 2e-08 | |
| d1oxxk2 | 242 | c.37.1.12 (K:1-242) Glucose transport protein GlcV | 6e-19 | |
| d1oxxk2 | 242 | c.37.1.12 (K:1-242) Glucose transport protein GlcV | 4e-07 | |
| d3d31a2 | 229 | c.37.1.12 (A:1-229) Sulfate/molybdate ABC transpor | 4e-15 | |
| d3d31a2 | 229 | c.37.1.12 (A:1-229) Sulfate/molybdate ABC transpor | 2e-07 | |
| d2onka1 | 240 | c.37.1.12 (A:1-240) Molybdate/tungstate import ATP | 9e-14 | |
| d2onka1 | 240 | c.37.1.12 (A:1-240) Molybdate/tungstate import ATP | 2e-05 | |
| g1ii8.1 | 369 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 3e-07 | |
| g1f2t.1 | 292 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 4e-07 | |
| g1f2t.1 | 292 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 0.001 | |
| d1ye8a1 | 178 | c.37.1.11 (A:1-178) Hypothetical kinase-like prote | 8e-07 | |
| d1w1wa_ | 427 | c.37.1.12 (A:) Smc head domain {Baker's yeast (Sac | 1e-04 |
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 113 bits (284), Expect = 1e-28
Identities = 56/221 (25%), Positives = 101/221 (45%), Gaps = 16/221 (7%)
Query: 620 KVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GNIT 676
K + E+ + L V+ + G ++MG SG+GK+T+++++ + T G + NI
Sbjct: 9 KTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIK 68
Query: 677 ISGYPKKQETFARIS--GYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEV 734
+ + T R G+ Q P +T E++ + + E R+ E
Sbjct: 69 TNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALEC 128
Query: 735 MELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV 794
+++ EL + P + LS Q++R+ IA L NP II D+PT LD++ +
Sbjct: 129 LKMAEL--EERFANHKP--NQLSGGQQQRVAIARALANNPPIILADQPTGALDSKTGEKI 184
Query: 795 MRTVRNTVD-TGRTVVCTIHQPSIDIFEA--FDELFLMKRG 832
M+ ++ + G+TVV H DI A + + +K G
Sbjct: 185 MQLLKKLNEEDGKTVVVVTH----DINVARFGERIIYLKDG 221
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 51.8 bits (124), Expect = 1e-07
Identities = 20/93 (21%), Positives = 41/93 (44%), Gaps = 2/93 (2%)
Query: 64 VGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSG 123
+ +SGGQ++RV + + D+ + LDS T +I+ L++ ++ G
Sbjct: 138 FANHKPNQLSGGQQQRVAIARALANNPPIILADQPTGALDSKTGEKIMQLLKK-LNEEDG 196
Query: 124 TAVISLLQPAPETYDLFDDIILLSDGQIVYQGP 156
V+ ++ + II L DG++ +
Sbjct: 197 KTVV-VVTHDINVARFGERIIYLKDGEVEREEK 228
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 254 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 111 bits (278), Expect = 9e-28
Identities = 51/208 (24%), Positives = 86/208 (41%), Gaps = 8/208 (3%)
Query: 632 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYPKKQETFAR 689
L+GVS + G +T ++G +G+GK+TL++V+ G + G + + E +
Sbjct: 20 LDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHY 79
Query: 690 ISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVG 749
Q +T+ E+LL ++S K +I + E+VE +
Sbjct: 80 GIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLK 139
Query: 750 LPG-----VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT 804
L LS Q K + I L+ NP +I MDEP +G+ A + V
Sbjct: 140 LSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAK 199
Query: 805 GRTVVCTIHQPSIDIFEAFDELFLMKRG 832
G T + H+ + D L++M G
Sbjct: 200 GITFLIIEHRLD-IVLNYIDHLYVMFNG 226
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 254 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 58.1 bits (140), Expect = 1e-09
Identities = 28/136 (20%), Positives = 52/136 (38%), Gaps = 7/136 (5%)
Query: 27 PDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMM 86
P ++ K + +E L+ L L D G+ +SGGQ K V G +
Sbjct: 111 PLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGE-----LSGGQMKLVEIGRAL 165
Query: 87 VGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILL 146
+ + MDE G+ I N + + G + + + D + ++
Sbjct: 166 MTNPKMIVMDEPIAGVAPGLAHDIFNHVLE--LKAKGITFLIIEHRLDIVLNYIDHLYVM 223
Query: 147 SDGQIVYQGPRELVLE 162
+GQI+ +G E ++
Sbjct: 224 FNGQIIAEGRGEEEIK 239
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Score = 109 bits (274), Expect = 3e-27
Identities = 47/207 (22%), Positives = 82/207 (39%), Gaps = 19/207 (9%)
Query: 632 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYPKKQETFAR 689
+ G+ G + L+G +GAGKTT + +AG R G I N
Sbjct: 22 IKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRM 81
Query: 690 ISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMEL-VELNPLRQSLV 748
+ P +T+YE+L+ A+ R D E K ++ + L L + L
Sbjct: 82 GIALVPEGRRIFPELTVYENLMMGAYNRK----DKEGIKRDLEWIFSLFPRLKERLKQLG 137
Query: 749 GLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTV 808
G LS +++ L I L++ P ++ MDEP+ GL + V ++ G T+
Sbjct: 138 G-----TLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTI 192
Query: 809 VCTIHQPSIDIFEAF---DELFLMKRG 832
+ + A ++++ G
Sbjct: 193 LLVEQ----NALGALKVAHYGYVLETG 215
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Score = 52.6 bits (126), Expect = 6e-08
Identities = 24/113 (21%), Positives = 46/113 (40%), Gaps = 7/113 (6%)
Query: 50 YLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQ 109
+ L + G +SGG+++ + G ++ L MDE S GL +
Sbjct: 123 FSLFPRLKERLKQLGGT-----LSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSE 177
Query: 110 IVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLE 162
+ +++ GT ++ + Q A + +L GQIV +G +L+
Sbjct: 178 VFEVIQK--INQEGTTILLVEQNALGALKVAHYGYVLETGQIVLEGKASELLD 228
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Length = 239 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Score = 108 bits (271), Expect = 8e-27
Identities = 50/213 (23%), Positives = 85/213 (39%), Gaps = 23/213 (10%)
Query: 627 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYPKKQ 684
+N ++ + G L+G SG GKTT + ++AG T G I
Sbjct: 17 GNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEG----RIYFGDRDVTY 72
Query: 685 -ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPL 743
R Q+ P +T+YE++ F ++ + + + EL+++ L
Sbjct: 73 LPPKDRNISMVFQSYAVWPHMTVYENIAFPLKIK---KFPKDEIDKRVRWAAELLQIEEL 129
Query: 744 RQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN-TV 802
+ LS QR+R+ +A +V P ++ MDEP S LDA+ + ++
Sbjct: 130 LNRYP-----AQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQ 184
Query: 803 DTGRTVVCTIHQPSIDIFEAF---DELFLMKRG 832
T + H D EA D + +M RG
Sbjct: 185 KLKVTTIYVTH----DQVEAMTMGDRIAVMNRG 213
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Length = 239 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Score = 64.4 bits (157), Expect = 8e-12
Identities = 28/142 (19%), Positives = 56/142 (39%), Gaps = 16/142 (11%)
Query: 41 QEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEIST 100
E + + ++L ++ + +SGGQ++RV +V L MDE +
Sbjct: 111 DEIDKRVRWAAELLQIEELLNRYPAQ-----LSGGQRQRVAVARAIVVEPDVLLMDEPLS 165
Query: 101 GLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQG-PREL 159
LD+ + +++ + I + E + D I +++ GQ++ G P E+
Sbjct: 166 NLDAKLRVAMRAEIKK-LQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEV 224
Query: 160 VLEFFASMGFRCPKRKGVADFL 181
+ P VA F+
Sbjct: 225 ---------YLRPNSVFVATFI 237
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Score = 104 bits (260), Expect = 3e-25
Identities = 46/218 (21%), Positives = 89/218 (40%), Gaps = 27/218 (12%)
Query: 632 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GNITISGYPKKQETFA 688
L GVS R G + +++G SG+GK+T + + + + G I I+ K
Sbjct: 18 LKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLK 77
Query: 689 RIS-----------GYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMEL 737
Q+ +T+ E+++ A +++ + R+ + +
Sbjct: 78 VADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVME-APIQVLGLSKHDARER-ALKYLAK 135
Query: 738 VELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT 797
V ++ Q LS Q++R++IA L P ++ DEPTS LD V+R
Sbjct: 136 VGIDERAQGKY----PVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRI 191
Query: 798 VRNTVDTGRTVVCTIHQPSIDIFEAF---DELFLMKRG 832
++ + G+T+V H ++ A + + +G
Sbjct: 192 MQQLAEEGKTMVVVTH----EMGFARHVSSHVIFLHQG 225
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Score = 54.1 bits (130), Expect = 3e-08
Identities = 29/142 (20%), Positives = 57/142 (40%), Gaps = 14/142 (9%)
Query: 41 QEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEIST 100
+A YL +G+D A + +SGGQ++RV+ + L DE ++
Sbjct: 123 HDARERALKYLAKVGIDERAQ----GKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTS 178
Query: 101 GLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELV 160
LD +++ ++Q G ++ + + +I L G+I +G E
Sbjct: 179 ALDPELVGEVLRIMQQ--LAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGDPE-- 234
Query: 161 LEFFASMGFRCPKRKGVADFLQ 182
+ F + P+ + FL+
Sbjct: 235 -QVFGN-----PQSPRLQQFLK 250
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Score = 103 bits (258), Expect = 4e-25
Identities = 53/218 (24%), Positives = 96/218 (44%), Gaps = 14/218 (6%)
Query: 620 KVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GNIT 676
KV + LN VS G + ++G SGAGK+TL+ + R T G +
Sbjct: 9 KVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQE 68
Query: 677 ISGYPKKQETFARIS-GYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVM 735
++ + + T AR G Q+ T++ ++ L +P+ + + R + E++
Sbjct: 69 LTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRR---VTELL 125
Query: 736 ELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM 795
LV L S S LS Q++R+ IA L +NP ++ DE TS LD ++
Sbjct: 126 SLVGLGDKHDSYP-----SNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSIL 180
Query: 796 RTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKRG 832
+++ G T++ H+ + + D + ++ G
Sbjct: 181 ELLKDINRRLGLTILLITHEMDV-VKRICDCVAVISNG 217
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Score = 57.2 bits (138), Expect = 2e-09
Identities = 31/140 (22%), Positives = 58/140 (41%), Gaps = 14/140 (10%)
Query: 41 QEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEIST 100
E L ++GL D+ + +SGGQK+RV + L DE ++
Sbjct: 115 DEVKRRVTELLSLVGLGDKHDSYPSN-----LSGGQKQRVAIARALASNPKVLLCDEATS 169
Query: 101 GLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELV 160
LD +TT + + L ++I+ G ++ + + D + ++S+G+++ Q
Sbjct: 170 ALDPATT-RSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVS-- 226
Query: 161 LEFFASMGFRCPKRKGVADF 180
E F+ PK F
Sbjct: 227 -EVFSH-----PKTPLAQKF 240
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} Length = 200 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Score = 101 bits (252), Expect = 7e-25
Identities = 39/192 (20%), Positives = 79/192 (41%), Gaps = 17/192 (8%)
Query: 627 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQET 686
DK VL ++ G + G +G GKTTL+ ++ + G I +G P +
Sbjct: 13 DKPVL-ERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLK--PLKGEIIYNGVPITK-- 67
Query: 687 FARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQS 746
+ + I +++ + L A L K I + +E VE+ L++
Sbjct: 68 VKGKIFFLPEEIIVPRKISVEDYLKAVASLYGVKV-----NKNEIMDALESVEVLDLKKK 122
Query: 747 LVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DTG 805
+ LS +R+ +A L+ N I +D+P +D + V++++ + + G
Sbjct: 123 ------LGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKG 176
Query: 806 RTVVCTIHQPSI 817
++ + + S
Sbjct: 177 IVIISSREELSY 188
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} Length = 238 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Score = 101 bits (254), Expect = 1e-24
Identities = 49/208 (23%), Positives = 88/208 (42%), Gaps = 13/208 (6%)
Query: 627 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYPKKQ 684
K +L G+S G + L+G +GAGKTT + +++ + + G +T + ++
Sbjct: 13 GKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVT--VFGKNVVEEP 70
Query: 685 ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLR 744
++ Y + + E L F A S + E ++ E+ L
Sbjct: 71 HEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEM---VERATEIAGLGEKI 127
Query: 745 QSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT 804
+ V S S ++L IA L+ NP + +DEPTSGLD A V + ++
Sbjct: 128 KDRV-----STYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQE 182
Query: 805 GRTVVCTIHQPSIDIFEAFDELFLMKRG 832
G T++ + H ++ D + L+ G
Sbjct: 183 GLTILVSSHNML-EVEFLCDRIALIHNG 209
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} Length = 238 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Score = 58.1 bits (140), Expect = 9e-10
Identities = 34/186 (18%), Positives = 66/186 (35%), Gaps = 21/186 (11%)
Query: 5 WNPAEMLTELARREKAAGIKPDPDIDVYMKAIA----TEGQEANVITDYYLKVLGLDVCA 60
P E+ ++ + AG + Y++ +A + E + + ++ GL
Sbjct: 68 EEPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKI 127
Query: 61 DTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHI 120
V S G +++ ++ +DE ++GLD ++ L+Q
Sbjct: 128 KDRVS-----TYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQ--AS 180
Query: 121 NSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQG-PRELVLEFFASMGFRCPKRKGVAD 179
G ++ E L D I L+ +G IV G EL K + + +
Sbjct: 181 QEGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEEL---------KERYKAQNIEE 231
Query: 180 FLQEVT 185
+EV
Sbjct: 232 VFEEVV 237
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 101 bits (254), Expect = 3e-24
Identities = 39/201 (19%), Positives = 79/201 (39%), Gaps = 19/201 (9%)
Query: 632 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARIS 691
L ++ G + A+ G +G+GKT+L+ ++ G G I SG R+
Sbjct: 52 LKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELE--ASEGIIKHSG---------RV- 99
Query: 692 GYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLP 751
+C Q P TI E+++F E ++ ++ + +++G
Sbjct: 100 SFCSQFSWIMPG-TIKENIIFGVSYD---EYRYKSVVKACQLQQDITKFAEQDNTVLG-E 154
Query: 752 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCT 811
G LS QR R+++A + + + +D P LD V + + +T +
Sbjct: 155 GGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILV 214
Query: 812 IHQPSIDIFEAFDELFLMKRG 832
+ D++ ++ +G
Sbjct: 215 TSKME--HLRKADKILILHQG 233
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 59.2 bits (143), Expect = 7e-10
Identities = 27/145 (18%), Positives = 48/145 (33%), Gaps = 12/145 (8%)
Query: 51 LKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQI 110
+ +T++G E +SGGQ+ R++ + A +D LD T Q+
Sbjct: 139 QDITKFAEQDNTVLG-EGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQV 197
Query: 111 VNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQG-PREL-------VLE 162
+ N +++ E D I++L G + G EL +
Sbjct: 198 FESCVCKLMANKTRILVTS---KMEHLRKADKILILHQGSSYFYGTFSELQSLRPDFSSK 254
Query: 163 FFASMGFRCPKRKGVADFLQEVTSR 187
F + + L E R
Sbjct: 255 LMGYDTFDQFTEERRSSILTETLRR 279
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 253 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Score = 98.0 bits (244), Expect = 4e-23
Identities = 42/205 (20%), Positives = 81/205 (39%), Gaps = 13/205 (6%)
Query: 632 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ---ETFA 688
L ++ G AL+G SG+GK+T+ ++ G+I + G+ ++ +
Sbjct: 31 LRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYD--IDEGHILMDGHDLREYTLASLR 88
Query: 689 RISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLR-QSL 747
QN +++ R + M+ + ++
Sbjct: 89 NQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAAR---MAYAMDFINKMDNGLDTI 145
Query: 748 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT 807
+G G LS QR+R+ IA L+ + I+ +DE TS LD + + + + RT
Sbjct: 146 IGENG-VLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDE-LQKNRT 203
Query: 808 VVCTIHQPSIDIFEAFDELFLMKRG 832
+ H+ S E DE+ +++ G
Sbjct: 204 SLVIAHRLS--TIEQADEIVVVEDG 226
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 253 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Score = 59.1 bits (143), Expect = 5e-10
Identities = 27/118 (22%), Positives = 57/118 (48%), Gaps = 8/118 (6%)
Query: 53 VLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVN 112
+ +D DT++G E +SGGQ++R+ ++ + L +DE ++ LD+ + I
Sbjct: 135 INKMDNGLDTIIG-ENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQA 193
Query: 113 CLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLE---FFASM 167
L + + + ++ T + D+I+++ DG IV +G +L +A +
Sbjct: 194 ALDE---LQKNRTSL-VIAHRLSTIEQADEIVVVEDGIIVERGTHSELLAQHGVYAQL 247
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} Length = 231 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Score = 96.2 bits (239), Expect = 8e-23
Identities = 43/211 (20%), Positives = 80/211 (37%), Gaps = 27/211 (12%)
Query: 632 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP---KKQETFA 688
L +SG R G + L+G +GAGK+TL+ +AG +G G+I +G P A
Sbjct: 15 LGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSG---KGSIQFAGQPLEAWSATKLA 71
Query: 689 RISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLV 748
Y Q ++ L + TR +++V + L+
Sbjct: 72 LHRAYLSQQQTPPFATPVWHYLTLHQHDK--------TRTELLNDVAGALALDDKLGRST 123
Query: 749 GLPGVSGLSTEQRKRLTIAVELVA-------NPSIIFMDEPTSGLDARAAAIVMRTVRNT 801
LS + +R+ +A ++ ++ +DEP + LD + + + +
Sbjct: 124 N-----QLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSAL 178
Query: 802 VDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 832
G +V + H + +L+K G
Sbjct: 179 CQQGLAIVMSSHDLN-HTLRHAHRAWLLKGG 208
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} Length = 231 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Score = 46.9 bits (111), Expect = 4e-06
Identities = 25/131 (19%), Positives = 42/131 (32%), Gaps = 14/131 (10%)
Query: 39 EGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALA------ 92
+ + + L LD +SGG+ +RV +++
Sbjct: 98 HDKTRTELLNDVAGALALDDKLGRSTNQ-----LSGGEWQRVRLAAVVLQITPQANPAGQ 152
Query: 93 -LFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQI 151
L +DE LD + + L G A++ T LL G++
Sbjct: 153 LLLLDEPMNSLDVAQQSALDKILSALCQ--QGLAIVMSSHDLNHTLRHAHRAWLLKGGKM 210
Query: 152 VYQGPRELVLE 162
+ G RE VL
Sbjct: 211 LASGRREEVLT 221
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} Length = 241 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Score = 94.6 bits (235), Expect = 3e-22
Identities = 49/210 (23%), Positives = 92/210 (43%), Gaps = 12/210 (5%)
Query: 626 EDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP---K 682
D V+L+ ++ + + G + ++G SG+GK+TL ++ + I G+
Sbjct: 13 PDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQ--VLIDGHDLALA 70
Query: 683 KQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP 742
R G Q D +I +++ + +V + + + +
Sbjct: 71 DPNWLRRQVGVVLQ-DNVLLNRSIIDNISLANPGMSVEKVIYAAK---LAGAHDFISELR 126
Query: 743 LRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV 802
+ + +GLS QR+R+ IA LV NP I+ DE TS LD + ++MR + +
Sbjct: 127 EGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHK-I 185
Query: 803 DTGRTVVCTIHQPSIDIFEAFDELFLMKRG 832
GRTV+ H+ S + D + +M++G
Sbjct: 186 CKGRTVIIIAHRLS--TVKNADRIIVMEKG 213
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} Length = 241 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Score = 52.2 bits (125), Expect = 1e-07
Identities = 28/112 (25%), Positives = 47/112 (41%), Gaps = 4/112 (3%)
Query: 51 LKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQI 110
+ + E G+SGGQ++R+ +V L DE ++ LD + I
Sbjct: 119 HDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVI 178
Query: 111 VNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLE 162
+ + + I G VI + T D II++ G+IV QG + +L
Sbjct: 179 MRNMHK---ICKGRTVIIIAH-RLSTVKNADRIIVMEKGKIVEQGKHKELLS 226
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 232 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Score = 92.3 bits (229), Expect = 2e-21
Identities = 52/211 (24%), Positives = 90/211 (42%), Gaps = 19/211 (9%)
Query: 627 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQET 686
++V+ ++ G +G SG GK+TL+ ++AG +T + I
Sbjct: 11 GEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGD--LFIGEKRMNDTP 68
Query: 687 FARIS-GYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQ 745
A G Q+ P +++ E++ F L + + R +++V E+++L L
Sbjct: 69 PAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQR---VNQVAEVLQLAHLLD 125
Query: 746 SLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DT 804
LS QR+R+ I LVA PS+ +DEP S LDA + +
Sbjct: 126 RK-----PKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRL 180
Query: 805 GRTVVCTIHQPSIDIFEAF---DELFLMKRG 832
GRT++ H D EA D++ ++ G
Sbjct: 181 GRTMIYVTH----DQVEAMTLADKIVVLDAG 207
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 232 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Score = 53.0 bits (127), Expect = 4e-08
Identities = 35/154 (22%), Positives = 60/154 (38%), Gaps = 16/154 (10%)
Query: 29 IDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVG 88
+ +K + + N + +VL L D +SGGQ++RV G +V
Sbjct: 93 MSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKA-----LSGGQRQRVAIGRTLVA 147
Query: 89 PALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSD 148
+DE + LD++ + +H G +I + E L D I++L
Sbjct: 148 EPSVFLLDEPLSNLDAA-LRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDA 206
Query: 149 GQIVYQG-PRELVLEFFASMGFRCPKRKGVADFL 181
G++ G P EL + P + VA F+
Sbjct: 207 GRVAQVGKPLEL---------YHYPADRFVAGFI 231
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 255 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Score = 92.5 bits (230), Expect = 3e-21
Identities = 52/238 (21%), Positives = 99/238 (41%), Gaps = 21/238 (8%)
Query: 597 LPFEPHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKT 656
+ + + D V + + +++ +L ++ + G A +G+SG GK+
Sbjct: 10 IEIKQGRIDIDHVSFQYN-----------DNEAPILKDINLSIEKGETVAFVGMSGGGKS 58
Query: 657 TLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCE--QNDIHSPFVTIYESLLFSA 714
TL++++ +G I I G+ K + Q D T+ E++L
Sbjct: 59 TLINLIPRFYD--VTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLGR 116
Query: 715 WLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANP 774
EV + + + L + VG GV LS Q++RL+IA + NP
Sbjct: 117 PTATDEEVVEAAKMANAHDFIM--NLPQGYDTEVGERGVK-LSGGQKQRLSIARIFLNNP 173
Query: 775 SIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 832
I+ +DE TS LD + +I+ + + RT + H+ S D++ +++ G
Sbjct: 174 PILILDEATSALDLESESIIQEALDV-LSKDRTTLIVAHRLS--TITHADKIVVIENG 228
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 255 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Score = 54.4 bits (131), Expect = 2e-08
Identities = 26/118 (22%), Positives = 51/118 (43%), Gaps = 8/118 (6%)
Query: 53 VLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVN 112
++ L DT VG E +SGGQK+R++ + + L +DE ++ LD + I
Sbjct: 137 IMNLPQGYDTEVG-ERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQE 195
Query: 113 CLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLE---FFASM 167
L ++ + ++ T D I+++ +G IV G ++ + +
Sbjct: 196 ALDV---LSKDRTTL-IVAHRLSTITHADKIVVIENGHIVETGTHRELIAKQGAYEHL 249
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 91.9 bits (228), Expect = 4e-21
Identities = 49/244 (20%), Positives = 98/244 (40%), Gaps = 22/244 (9%)
Query: 594 GMVLPFEPH-SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSG 652
G++ P + F +V ++ ++ V L G++ RPG +TAL+G +G
Sbjct: 1 GLLTPLHLEGLVQFQDVSFAYPNRPDVLV----------LQGLTFTLRPGEVTALVGPNG 50
Query: 653 AGKTTLMDVLAG--RKTGGYIT-GNITISGYPKKQETFARISGYCEQNDIHSPFVTIYES 709
+GK+T+ +L + TGG + + Y + R Q ++ E+
Sbjct: 51 SGKSTVAALLQNLYQPTGGQLLLDGKPLPQYEHRY--LHRQVAAVGQEPQVFGR-SLQEN 107
Query: 710 LLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVE 769
+ + + + E + + P S LS QR+ + +A
Sbjct: 108 IAYGLTQKPTMEEITAAAVK--SGAHSFISGLPQGYDTEVDEAGSQLSGGQRQAVALARA 165
Query: 770 LVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFL 828
L+ P ++ +D+ TS LDA + V + + + + R+V+ S + E D +
Sbjct: 166 LIRKPCVLILDDATSALDANSQLQVEQLLYESPERYSRSVLLITQHLS--LVEQADHILF 223
Query: 829 MKRG 832
++ G
Sbjct: 224 LEGG 227
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 58.0 bits (140), Expect = 1e-09
Identities = 29/148 (19%), Positives = 63/148 (42%), Gaps = 6/148 (4%)
Query: 23 IKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTT 82
++ + + K E A V + + + GL DT V + + +SGGQ++ V
Sbjct: 104 LQENIAYGLTQKPTMEEITAAAVKSGAHSFISGLPQGYDTEVDEAGSQ-LSGGQRQAVAL 162
Query: 83 GEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDD 142
++ L +D+ ++ LD+++ Q+ L ++ S + ++ + D
Sbjct: 163 ARALIRKPCVLILDDATSALDANSQLQVEQLLYESPERYSRSVLLITQH--LSLVEQADH 220
Query: 143 IILLSDGQIVYQGPRELVLE---FFASM 167
I+ L G I G + ++E + +M
Sbjct: 221 ILFLEGGAIREGGTHQQLMEKKGCYWAM 248
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Score = 87.2 bits (216), Expect = 1e-19
Identities = 49/204 (24%), Positives = 89/204 (43%), Gaps = 11/204 (5%)
Query: 632 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GNITISGYPKKQETFA 688
L +S +P + A G SG GK+T+ +L + T G IT I + +
Sbjct: 18 LRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLEN--WR 75
Query: 689 RISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLV 748
G+ Q+ TI E+L + + E + + VE P + +
Sbjct: 76 SQIGFVSQDSAIMAG-TIRENLTYGLEGDYTDEDLWQVLD--LAFARSFVENMPDQLNTE 132
Query: 749 GLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTV 808
+S QR+RL IA + NP I+ +DE T+ LD+ + ++V + + + + GRT
Sbjct: 133 VGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDS-LMKGRTT 191
Query: 809 VCTIHQPSIDIFEAFDELFLMKRG 832
+ H+ S D+++ +++G
Sbjct: 192 LVIAHRLS--TIVDADKIYFIEKG 213
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Score = 48.3 bits (115), Expect = 2e-06
Identities = 26/110 (23%), Positives = 42/110 (38%), Gaps = 8/110 (7%)
Query: 61 DTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHI 120
+T VG E ISGGQ++R+ + L +DE + LDS + + L +
Sbjct: 130 NTEVG-ERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDS---L 185
Query: 121 NSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLE---FFASM 167
G + + T D I + GQI G ++ +A
Sbjct: 186 MKGRTTLVIAH-RLSTIVDADKIYFIEKGQITGSGKHNELVATHPLYAKY 234
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Score = 87.3 bits (216), Expect = 1e-19
Identities = 56/215 (26%), Positives = 92/215 (42%), Gaps = 21/215 (9%)
Query: 627 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GNITISGYPKK 683
++ + +S + G L+G SG GKTT + ++AG + G I G+ ++ K
Sbjct: 14 GEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKG 73
Query: 684 QETFARISG--YCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELN 741
+ Q+ P +T+Y+++ F LR P + + R + EV EL+ L
Sbjct: 74 IFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQR---VREVAELLGLT 130
Query: 742 PLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT 801
L LS QR+R+ + +V P + MDEP S LDA+ + ++
Sbjct: 131 ELLNR-----KPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKL 185
Query: 802 V-DTGRTVVCTIHQPSIDIFEAF---DELFLMKRG 832
G T + H D EA D + +M RG
Sbjct: 186 QRQLGVTTIYVTH----DQVEAMTMGDRIAVMNRG 216
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Score = 54.6 bits (131), Expect = 2e-08
Identities = 30/141 (21%), Positives = 53/141 (37%), Gaps = 14/141 (9%)
Query: 41 QEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEIST 100
QE + ++LGL + + +SGGQ++RV G +V MDE +
Sbjct: 114 QEIDQRVREVAELLGLTELLNRKPRE-----LSGGQRQRVALGRAIVRKPQVFLMDEPLS 168
Query: 101 GLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELV 160
LD + + + + G I + E + D I +++ G + G + V
Sbjct: 169 NLD-AKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEV 227
Query: 161 LEFFASMGFRCPKRKGVADFL 181
+ P VA F+
Sbjct: 228 --------YDKPANTFVAGFI 240
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Score = 85.5 bits (211), Expect = 6e-19
Identities = 55/210 (26%), Positives = 98/210 (46%), Gaps = 14/210 (6%)
Query: 628 KLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYPKKQE 685
K+V L+ V+ G ++G SGAGKTT M ++AG + G + + + K
Sbjct: 17 KVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLI 76
Query: 686 T--FARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPL 743
R G Q P +T +E++ F ++ E + ++EV ++++++ +
Sbjct: 77 VPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNM---KMSKEEIRKRVEEVAKILDIHHV 133
Query: 744 RQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV- 802
LS Q++R+ +A LV +PS++ +DEP S LDAR V+
Sbjct: 134 LN-----HFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQS 188
Query: 803 DTGRTVVCTIHQPSIDIFEAFDELFLMKRG 832
G T++ H P+ DIF D + ++ +G
Sbjct: 189 RLGVTLLVVSHDPA-DIFAIADRVGVLVKG 217
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Score = 50.5 bits (120), Expect = 4e-07
Identities = 25/127 (19%), Positives = 49/127 (38%), Gaps = 11/127 (8%)
Query: 56 LDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLR 115
+ V + R +SG Q++RV +V L +DE + LD+ L
Sbjct: 125 AKILDIHHVLNHFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMR-DSARALV 183
Query: 116 QNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQG-PRELVLEFFASMGFRCPKR 174
+ + G ++ + + + + D + +L G++V G P +L + P
Sbjct: 184 KEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDL---------YDNPVS 234
Query: 175 KGVADFL 181
VA +
Sbjct: 235 IQVASLI 241
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} Length = 229 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Score = 73.9 bits (181), Expect = 4e-15
Identities = 40/203 (19%), Positives = 76/203 (37%), Gaps = 16/203 (7%)
Query: 632 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISG-YPKKQETFARI 690
L+ +S G ++G +GAGKT ++++AG I + G
Sbjct: 16 LDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGR--ILLDGKDVTDLSPEKHD 73
Query: 691 SGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGL 750
+ QN P + + ++L F ++ + + +++ L
Sbjct: 74 IAFVYQNYSLFPHMNVKKNLEFGMRMK------KIKDPKRVLDTARDLKIEHLLDRN--- 124
Query: 751 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DTGRTVV 809
LS +++R+ +A LV NP I+ +DEP S LD R + TV+
Sbjct: 125 --PLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVL 182
Query: 810 CTIHQPSIDIFEAFDELFLMKRG 832
H + + D + ++ G
Sbjct: 183 HITHDQT-EARIMADRIAVVMDG 204
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} Length = 229 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Score = 51.2 bits (122), Expect = 2e-07
Identities = 28/117 (23%), Positives = 49/117 (41%), Gaps = 11/117 (9%)
Query: 66 DEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTA 125
D +SGG+++RV +V L +DE + LD T + + +H +
Sbjct: 122 DRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDP-RTQENAREMLSVLHKKNKLT 180
Query: 126 VISLLQPAPETYDLFDDIILLSDGQIVYQG-PRELVLEFFASMGFRCPKRKGVADFL 181
V+ + E + D I ++ DG+++ G P E+ F P VA F+
Sbjct: 181 VLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEI---------FEKPVEGRVASFV 228
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 70.0 bits (171), Expect = 9e-14
Identities = 41/196 (20%), Positives = 85/196 (43%), Gaps = 19/196 (9%)
Query: 641 PGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GNITISGYPKKQETFARISGYCEQN 697
L+G +GAGK+ ++++AG + G + I+ P ++ R G+ Q+
Sbjct: 23 GRDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPER----RGIGFVPQD 78
Query: 698 DIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLS 757
P +++Y ++ + V+ R + E+ E + + L + LS
Sbjct: 79 YALFPHLSVYRNIAYGLR-----NVERVERDRRVREMAEKLGIAHLLDRK-----PARLS 128
Query: 758 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DTGRTVVCTIHQPS 816
+R+R+ +A LV P ++ +DEP S +D + ++M +R + ++ H
Sbjct: 129 GGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLI 188
Query: 817 IDIFEAFDELFLMKRG 832
+ DE+ +M G
Sbjct: 189 -EAAMLADEVAVMLNG 203
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 45.0 bits (106), Expect = 2e-05
Identities = 28/126 (22%), Positives = 54/126 (42%), Gaps = 10/126 (7%)
Query: 56 LDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLR 115
+ + D +SGG+++RV +V L +DE + +D T ++ LR
Sbjct: 111 AEKLGIAHLLDRKPARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELR 170
Query: 116 QNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLEFFASMGFRCPKRK 175
+ ++ + E L D++ ++ +G+IV +G + E F+ K
Sbjct: 171 F-VQREFDVPILHVTHDLIEAAMLADEVAVMLNGRIVEKGKLK---ELFS------AKNG 220
Query: 176 GVADFL 181
VA+FL
Sbjct: 221 EVAEFL 226
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} Length = 178 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Score = 48.4 bits (114), Expect = 8e-07
Identities = 23/201 (11%), Positives = 45/201 (22%), Gaps = 42/201 (20%)
Query: 646 ALMGVSGAGKTTLMDVLAG---RKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSP 702
+ G G GKTTL+ + ++ G+ T + K+
Sbjct: 4 IITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKR------------------- 44
Query: 703 FVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRK 762
+ + + + ++
Sbjct: 45 ------------TGFRIITTEGKKKIFSSKFFTSKKLVGSYGVNV----QYFEELAIPIL 88
Query: 763 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEA 822
+I +DE + + D VV TI +
Sbjct: 89 ERAYREAKKDRRKVIIIDEIGKMEL-FSKKFRDLVRQIMHDPNVNVVATIPIRDVHPL-- 145
Query: 823 FDELFLMKRGGQEIYVGPLGR 843
E+ + G I + P R
Sbjct: 146 VKEIRRLP-GAVLIELTPENR 165
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 427 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 43.6 bits (101), Expect = 1e-04
Identities = 21/143 (14%), Positives = 39/143 (27%), Gaps = 19/143 (13%)
Query: 696 QNDIHSPFVTIYESLL-----------FSAWLRLSPEVDSETRKMFIDEVMELVELNPLR 744
+ + IY L +A L + E + + L +
Sbjct: 272 FDYVSDHLDAIYRELTKNPNSNVELAGGNASLTIEDEDEPFNAGIKYHATPPLKRFKDME 331
Query: 745 QSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT 804
G V+ L+ L A+ +DE + LD + +R +
Sbjct: 332 YLSGGEKTVAALA------LLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNP 385
Query: 805 GRTVVCTIHQPSIDIFEAFDELF 827
+ + +FE D L
Sbjct: 386 DLQFIVISLKN--TMFEKSDALV 406
|
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 1202 | |||
| d1v43a3 | 239 | Hypothetical protein PH0022, N-terminal domain {Py | 100.0 | |
| d2awna2 | 232 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d1g2912 | 240 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d1oxxk2 | 242 | Glucose transport protein GlcV, N-terminal domain | 100.0 | |
| d3dhwc1 | 240 | Methionine import ATP-binding protein MetN {Escher | 100.0 | |
| d1l2ta_ | 230 | MJ0796 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d3d31a2 | 229 | Sulfate/molybdate ABC transporter, ATP-binding pro | 100.0 | |
| d1vpla_ | 238 | Putative ABC transporter TM0544 {Thermotoga mariti | 100.0 | |
| d1b0ua_ | 258 | ATP-binding subunit of the histidine permease {Sal | 100.0 | |
| d1ji0a_ | 240 | Branched chain aminoacid ABC transporter {Thermoto | 100.0 | |
| d1g6ha_ | 254 | MJ1267 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d2onka1 | 240 | Molybdate/tungstate import ATP-binding protein Wtp | 100.0 | |
| d2pmka1 | 241 | Haemolysin B ATP-binding protein {Escherichia coli | 100.0 | |
| d1jj7a_ | 251 | Peptide transporter Tap1, C-terminal ABC domain {H | 100.0 | |
| d2hyda1 | 255 | Putative multidrug export ATP-binding/permease pro | 100.0 | |
| d1mv5a_ | 242 | Multidrug resistance ABC transporter LmrA, C-termi | 100.0 | |
| d3b60a1 | 253 | Multidrug resistance ABC transporter MsbA, C-termi | 100.0 | |
| d1l7vc_ | 231 | ABC transporter involved in vitamin B12 uptake, Bt | 100.0 | |
| d1r0wa_ | 281 | Cystic fibrosis transmembrane conductance regulato | 100.0 | |
| d1sgwa_ | 200 | Putative ABC transporter PF0895 {Pyrococcus furios | 100.0 | |
| d2awna2 | 232 | Maltose transport protein MalK, N-terminal domain | 99.91 | |
| d1g2912 | 240 | Maltose transport protein MalK, N-terminal domain | 99.91 | |
| d3dhwc1 | 240 | Methionine import ATP-binding protein MetN {Escher | 99.91 | |
| d1v43a3 | 239 | Hypothetical protein PH0022, N-terminal domain {Py | 99.91 | |
| d1oxxk2 | 242 | Glucose transport protein GlcV, N-terminal domain | 99.9 | |
| d2onka1 | 240 | Molybdate/tungstate import ATP-binding protein Wtp | 99.9 | |
| d1jj7a_ | 251 | Peptide transporter Tap1, C-terminal ABC domain {H | 99.9 | |
| d3d31a2 | 229 | Sulfate/molybdate ABC transporter, ATP-binding pro | 99.9 | |
| d2pmka1 | 241 | Haemolysin B ATP-binding protein {Escherichia coli | 99.9 | |
| d2hyda1 | 255 | Putative multidrug export ATP-binding/permease pro | 99.89 | |
| d3b60a1 | 253 | Multidrug resistance ABC transporter MsbA, C-termi | 99.89 | |
| d1mv5a_ | 242 | Multidrug resistance ABC transporter LmrA, C-termi | 99.89 | |
| d1l2ta_ | 230 | MJ0796 {Archaeon Methanococcus jannaschii [TaxId: | 99.89 | |
| d1vpla_ | 238 | Putative ABC transporter TM0544 {Thermotoga mariti | 99.88 | |
| d1r0wa_ | 281 | Cystic fibrosis transmembrane conductance regulato | 99.86 | |
| d1ji0a_ | 240 | Branched chain aminoacid ABC transporter {Thermoto | 99.86 | |
| d1b0ua_ | 258 | ATP-binding subunit of the histidine permease {Sal | 99.86 | |
| d1g6ha_ | 254 | MJ1267 {Archaeon Methanococcus jannaschii [TaxId: | 99.85 | |
| d1l7vc_ | 231 | ABC transporter involved in vitamin B12 uptake, Bt | 99.82 | |
| g1f2t.1 | 292 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.76 | |
| d1sgwa_ | 200 | Putative ABC transporter PF0895 {Pyrococcus furios | 99.57 | |
| d1ye8a1 | 178 | Hypothetical kinase-like protein Aq_1292 {Aquifex | 99.38 | |
| g1f2t.1 | 292 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.13 | |
| g1ii8.1 | 369 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 98.93 | |
| d1e69a_ | 308 | Smc head domain {Thermotoga maritima [TaxId: 2336] | 98.84 | |
| g1ii8.1 | 369 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 98.68 | |
| d1w1wa_ | 427 | Smc head domain {Baker's yeast (Saccharomyces cere | 98.44 | |
| g1xew.1 | 329 | Smc head domain {Pyrococcus furiosus [TaxId: 2261] | 98.42 | |
| d1w1wa_ | 427 | Smc head domain {Baker's yeast (Saccharomyces cere | 98.04 | |
| d1ewqa2 | 224 | DNA repair protein MutS, the C-terminal domain {Th | 97.66 | |
| d1wb9a2 | 234 | DNA repair protein MutS, the C-terminal domain {Es | 97.51 | |
| d1ye8a1 | 178 | Hypothetical kinase-like protein Aq_1292 {Aquifex | 97.41 | |
| d1cr2a_ | 277 | Gene 4 protein (g4p, DNA primase), helicase domain | 96.98 | |
| d1e69a_ | 308 | Smc head domain {Thermotoga maritima [TaxId: 2336] | 96.76 | |
| d1u0la2 | 225 | Probable GTPase EngC (YjeQ), C-terminal domain {Th | 96.45 | |
| d1znwa1 | 182 | Guanylate kinase {Mycobacterium tuberculosis [TaxI | 96.33 | |
| d1zp6a1 | 176 | Hypothetical protein Atu3015 {Agrobacterium tumefa | 96.16 | |
| d1np6a_ | 170 | Molybdopterin-guanine dinucleotide biosynthesis pr | 96.14 | |
| d1qhla_ | 222 | Cell division protein MukB {Escherichia coli [TaxI | 96.12 | |
| d1nlfa_ | 274 | Hexameric replicative helicase repA {Escherichia c | 96.1 | |
| d1knqa_ | 171 | Gluconate kinase {Escherichia coli [TaxId: 562]} | 95.96 | |
| d1t9ha2 | 231 | Probable GTPase EngC (YjeQ), C-terminal domain {Ba | 95.91 | |
| d1tf7a1 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 95.85 | |
| d1m8pa3 | 183 | ATP sulfurylase C-terminal domain {Fungus (Penicil | 95.77 | |
| d1s96a_ | 205 | Guanylate kinase {Escherichia coli [TaxId: 562]} | 95.68 | |
| d1xjca_ | 165 | Molybdopterin-guanine dinucleotide biosynthesis pr | 95.44 | |
| d1y63a_ | 174 | Probable kinase LmjF30.1890 {Leishmania major [Tax | 95.37 | |
| d1ly1a_ | 152 | Polynucleotide kinase, kinase domain {Bacteriophag | 95.35 | |
| d1lw7a2 | 192 | Transcriptional regulator NadR, ribosylnicotinamid | 95.29 | |
| d1lv7a_ | 256 | AAA domain of cell division protein FtsH {Escheric | 95.24 | |
| d1tf7a2 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 95.23 | |
| d1qhxa_ | 178 | Chloramphenicol phosphotransferase {Streptomyces v | 95.09 | |
| d1svia_ | 195 | Probable GTPase EngB {Bacillus subtilis [TaxId: 14 | 95.07 | |
| d2bdta1 | 176 | Hypothetical protein BH3686 {Bacillus halodurans [ | 95.06 | |
| d2i3ba1 | 189 | Cancer-related NTPase, C1orf57 {Human (Homo sapien | 94.99 | |
| d1rkba_ | 173 | Adenylate kinase {Human (Homo sapiens), isoenzyme | 94.96 | |
| d1rz3a_ | 198 | Hypothetical protein rbstp0775 {Bacillus stearothe | 94.81 | |
| d1lnza2 | 185 | Obg GTP-binding protein middle domain {Bacillus su | 94.7 | |
| d2cxxa1 | 184 | GTP-binding protein engB {Pyrococcus horikoshii [T | 94.67 | |
| d1khta_ | 190 | Adenylate kinase {Archaeon Methanococcus voltae [T | 94.66 | |
| d1kaga_ | 169 | Shikimate kinase (AroK) {Escherichia coli [TaxId: | 94.66 | |
| d1gkya_ | 186 | Guanylate kinase {Baker's yeast (Saccharomyces cer | 94.58 | |
| d1kgda_ | 178 | Guanylate kinase-like domain of Cask {Human (Homo | 94.55 | |
| d1qf9a_ | 194 | UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4 | 94.52 | |
| d1x6va3 | 195 | Adenosine-5'phosphosulfate kinase (APS kinase) {Hu | 94.51 | |
| d1mkya1 | 171 | Probable GTPase Der, N-terminal and middle domains | 94.49 | |
| d1yrba1 | 244 | ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss | 94.34 | |
| d1egaa1 | 179 | GTPase Era, N-terminal domain {Escherichia coli [T | 94.34 | |
| g1xew.1 | 329 | Smc head domain {Pyrococcus furiosus [TaxId: 2261] | 94.22 | |
| d1lvga_ | 190 | Guanylate kinase {Mouse (Mus musculus) [TaxId: 100 | 94.15 | |
| d1wf3a1 | 178 | GTPase Era, N-terminal domain {Thermus thermophilu | 94.13 | |
| d1nrjb_ | 209 | Signal recognition particle receptor beta-subunit | 94.11 | |
| d1udxa2 | 180 | Obg GTP-binding protein middle domain {Thermus the | 94.11 | |
| d1viaa_ | 161 | Shikimate kinase (AroK) {Campylobacter jejuni [Tax | 94.01 | |
| d3adka_ | 194 | Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | 94.0 | |
| d1ukza_ | 196 | Uridylate kinase {Baker's yeast (Saccharomyces cer | 93.97 | |
| d1f6ba_ | 186 | SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: | 93.96 | |
| d1mkya2 | 186 | Probable GTPase Der, N-terminal and middle domains | 93.95 | |
| d1uj2a_ | 213 | Uridine-cytidine kinase 2 {Human (Homo sapiens) [T | 93.8 | |
| d1r8sa_ | 160 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 93.78 | |
| d2gj8a1 | 161 | Probable tRNA modification GTPase TrmE (MnmE), G d | 93.78 | |
| d1n0wa_ | 242 | DNA repair protein Rad51, catalytic domain {Human | 93.77 | |
| d2qtvb1 | 166 | SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 93.7 | |
| d1e6ca_ | 170 | Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax | 93.6 | |
| d1upta_ | 169 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 93.57 | |
| d1ak2a1 | 190 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 93.53 | |
| d1zaka1 | 189 | Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | 93.51 | |
| d1yj5a2 | 172 | 5' polynucleotide kinase-3' phosphatase, C-termina | 93.49 | |
| d1teva_ | 194 | UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606] | 93.39 | |
| d2iyva1 | 165 | Shikimate kinase (AroK) {Mycobacterium tuberculosi | 93.39 | |
| d1zina1 | 182 | Adenylate kinase {Bacillus stearothermophilus [Tax | 93.3 | |
| d1nksa_ | 194 | Adenylate kinase {Archaeon Sulfolobus acidocaldari | 93.27 | |
| d1ksha_ | 165 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 93.25 | |
| d1puia_ | 188 | Probable GTPase EngB {Escherichia coli [TaxId: 562 | 93.17 | |
| d1s3ga1 | 182 | Adenylate kinase {Bacillus globisporus [TaxId: 145 | 92.84 | |
| d1gvnb_ | 273 | Plasmid maintenance system epsilon/zeta, toxin zet | 92.74 | |
| d1wb1a4 | 179 | Elongation factor SelB, N-terminal domain {Methano | 92.71 | |
| d1h65a_ | 257 | Chloroplast protein translocon GTPase Toc34 {Garde | 92.71 | |
| d1q3ta_ | 223 | CMP kinase {Streptococcus pneumoniae [TaxId: 1313] | 92.66 | |
| d1bifa1 | 213 | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphata | 92.64 | |
| d1uf9a_ | 191 | Dephospho-CoA kinase {Thermus thermophilus [TaxId: | 92.47 | |
| d1e4va1 | 179 | Adenylate kinase {Escherichia coli [TaxId: 562]} | 92.41 | |
| d1m7ga_ | 208 | Adenosine-5'phosphosulfate kinase (APS kinase) {Fu | 92.35 | |
| d1okkd2 | 207 | GTPase domain of the signal recognition particle r | 92.34 | |
| d1xzpa2 | 160 | TrmE GTPase domain {Thermotoga maritima [TaxId: 23 | 92.3 | |
| d2fh5b1 | 207 | Signal recognition particle receptor beta-subunit | 92.29 | |
| d2cdna1 | 181 | Adenylate kinase {Mycobacterium tuberculosis [TaxI | 92.26 | |
| d2vp4a1 | 197 | Deoxyribonucleoside kinase {Fruit fly (Drosophila | 92.24 | |
| d1zj6a1 | 177 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 92.2 | |
| d1ckea_ | 225 | CMP kinase {Escherichia coli [TaxId: 562]} | 92.02 | |
| d2ak3a1 | 189 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 91.92 | |
| d1nn5a_ | 209 | Thymidylate kinase {Human (Homo sapiens) [TaxId: 9 | 91.9 | |
| d1akya1 | 180 | Adenylate kinase {Baker's yeast (Saccharomyces cer | 91.86 | |
| d2p67a1 | 327 | LAO/AO transport system kinase ArgK {Escherichia c | 91.8 | |
| d1zd9a1 | 164 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 91.72 | |
| d1szpa2 | 251 | DNA repair protein Rad51, catalytic domain {Baker' | 91.61 | |
| d1g6oa_ | 323 | Hexameric traffic ATPase, HP0525 {Helicobacter pyl | 91.38 | |
| d1fzqa_ | 176 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 91.21 | |
| d2f7sa1 | 186 | Rab27b {Human (Homo sapiens) [TaxId: 9606]} | 91.2 | |
| d4tmka_ | 210 | Thymidylate kinase {Escherichia coli [TaxId: 562]} | 91.17 | |
| d1vmaa2 | 213 | GTPase domain of the signal recognition particle r | 91.09 | |
| d1pzna2 | 254 | DNA repair protein Rad51, catalytic domain {Archae | 91.08 | |
| d1ls1a2 | 207 | GTPase domain of the signal sequence recognition p | 91.06 | |
| d1jjva_ | 205 | Dephospho-CoA kinase {Haemophilus influenzae [TaxI | 91.04 | |
| d1p5zb_ | 241 | Deoxycytidine kinase {Human (Homo sapiens) [TaxId: | 90.9 | |
| d3raba_ | 169 | Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | 90.89 | |
| d1sq5a_ | 308 | Pantothenate kinase PanK {Escherichia coli [TaxId: | 90.84 | |
| d1tq4a_ | 400 | Interferon-inducible GTPase {Mouse (Mus musculus) | 90.77 | |
| d1ky3a_ | 175 | Rab-related protein ypt7p {Baker's yeast (Saccharo | 90.76 | |
| d1sxja2 | 253 | Replication factor C1 {Baker's yeast (Saccharomyce | 90.76 | |
| d1ctqa_ | 166 | cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9 | 90.66 | |
| d2qm8a1 | 323 | Metallochaperone MeaB {Methylobacterium extorquens | 90.62 | |
| d1knxa2 | 177 | HPr kinase HprK C-terminal domain {Mycoplasma pneu | 90.62 | |
| d1iqpa2 | 231 | Replication factor C {Archaeon Pyrococcus furiosus | 90.6 | |
| d1a7ja_ | 288 | Phosphoribulokinase {Rhodobacter sphaeroides [TaxI | 90.56 | |
| d1ofha_ | 309 | HslU {Haemophilus influenzae [TaxId: 727]} | 90.34 | |
| d2qy9a2 | 211 | GTPase domain of the signal recognition particle r | 90.33 | |
| d1z2aa1 | 164 | Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | 90.3 | |
| d1in4a2 | 238 | Holliday junction helicase RuvB {Thermotoga mariti | 90.29 | |
| d1tmka_ | 214 | Thymidylate kinase {Baker's yeast (Saccharomyces c | 90.28 | |
| d2f9la1 | 175 | Rab11b {Human (Homo sapiens) [TaxId: 9606]} | 90.24 | |
| d2a5yb3 | 277 | CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI | 90.24 | |
| d2fnaa2 | 283 | Archaeal ATPase SSO1545 {Sulfolobus solfataricus [ | 90.15 | |
| d1g7sa4 | 227 | Initiation factor IF2/eIF5b, N-terminal (G) domain | 90.14 | |
| d2i1qa2 | 258 | DNA repair protein Rad51, catalytic domain {Archae | 90.11 | |
| d1j8yf2 | 211 | GTPase domain of the signal sequence recognition p | 89.91 | |
| d1xtqa1 | 167 | GTP-binding protein RheB {Human (Homo sapiens) [Ta | 89.83 | |
| d2erxa1 | 171 | di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 89.76 | |
| d2gjsa1 | 168 | Rad {Human (Homo sapiens) [TaxId: 9606]} | 89.73 | |
| d1g16a_ | 166 | Rab-related protein Sec4 {Baker's yeast (Saccharom | 89.7 | |
| d1vhta_ | 208 | Dephospho-CoA kinase {Escherichia coli [TaxId: 562 | 89.68 | |
| d1ixsb2 | 239 | Holliday junction helicase RuvB {Thermus thermophi | 89.62 | |
| d1htwa_ | 158 | Hypothetical protein HI0065 {Haemophilus influenza | 89.54 | |
| d1moza_ | 182 | ADP-ribosylation factor {Baker's yeast (Saccharomy | 89.51 | |
| d1v5wa_ | 258 | Meiotic recombination protein DMC1/LIM15 homolog { | 89.51 | |
| d2a5ja1 | 173 | Rab2b {Human (Homo sapiens) [TaxId: 9606]} | 89.49 | |
| d1d2na_ | 246 | Hexamerization domain of N-ethylmalemide-sensitive | 89.35 | |
| d2erya1 | 171 | r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 89.29 | |
| d2ew1a1 | 171 | Rab30 {Human (Homo sapiens) [TaxId: 9606]} | 89.24 | |
| d1sxjd2 | 237 | Replication factor C2 {Baker's yeast (Saccharomyce | 89.21 | |
| d1wmsa_ | 174 | Rab9a {Human (Homo sapiens) [TaxId: 9606]} | 89.17 | |
| d1kaoa_ | 167 | Rap2a {Human (Homo sapiens) [TaxId: 9606]} | 88.95 | |
| d1vg8a_ | 184 | Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | 88.85 | |
| d1z0fa1 | 166 | Rab14 {Human (Homo sapiens) [TaxId: 9606]} | 88.56 | |
| d2g3ya1 | 172 | GTP-binding protein GEM {Human (Homo sapiens) [Tax | 88.56 | |
| d1yzqa1 | 164 | Rab6 {Human (Homo sapiens) [TaxId: 9606]} | 88.52 | |
| d1z06a1 | 165 | Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | 88.45 | |
| d1e0sa_ | 173 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 88.33 | |
| d1x3sa1 | 177 | Rab18 {Human (Homo sapiens) [TaxId: 9606]} | 88.25 | |
| d2bmja1 | 175 | Centaurin gamma 1, G domain {Human (Homo sapiens) | 88.17 | |
| d2bcgy1 | 194 | GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi | 88.12 | |
| d1kkma_ | 176 | HPr kinase HprK C-terminal domain {Lactobacillus c | 88.12 | |
| d1z0ja1 | 167 | Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | 87.98 | |
| d1ixza_ | 247 | AAA domain of cell division protein FtsH {Thermus | 87.97 | |
| d1odfa_ | 286 | Hypothetical protein Ygr205W {Baker's yeast (Sacch | 87.92 | |
| d1r7ra3 | 265 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 87.9 | |
| d1kmqa_ | 177 | RhoA {Human (Homo sapiens) [TaxId: 9606]} | 87.77 | |
| d1z08a1 | 167 | Rab21 {Human (Homo sapiens) [TaxId: 9606]} | 87.76 | |
| d1sxjb2 | 224 | Replication factor C4 {Baker's yeast (Saccharomyce | 87.66 | |
| d1fnna2 | 276 | CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T | 87.6 | |
| d1gsia_ | 208 | Thymidylate kinase {Mycobacterium tuberculosis [Ta | 87.6 | |
| d2bmea1 | 174 | Rab4a {Human (Homo sapiens) [TaxId: 9606]} | 87.52 | |
| d1i2ma_ | 170 | Ran {Human (Homo sapiens) [TaxId: 9606]} | 87.46 | |
| d2fu5c1 | 173 | Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | 87.34 | |
| d2fn4a1 | 173 | r-Ras {Human (Homo sapiens) [TaxId: 9606]} | 87.07 | |
| d1mh1a_ | 183 | Rac {Human (Homo sapiens) [TaxId: 9606]} | 87.02 | |
| d2atva1 | 168 | Ras-like estrogen-regulated growth inhibitor, RERG | 86.98 | |
| d1ek0a_ | 170 | Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T | 86.92 | |
| d1ko7a2 | 169 | HPr kinase HprK C-terminal domain {Staphylococcus | 86.7 | |
| d1r2qa_ | 170 | Rab5a {Human (Homo sapiens) [TaxId: 9606]} | 86.56 | |
| d1f5na2 | 277 | Interferon-induced guanylate-binding protein 1 (GB | 86.51 | |
| d2g6ba1 | 170 | Rab26 {Human (Homo sapiens) [TaxId: 9606]} | 86.38 | |
| d1u8za_ | 168 | Ras-related protein RalA {Cotton-top tamarin (Sagu | 86.21 | |
| d1x1ra1 | 169 | Ras-related protein M-Ras (XRas) {Mouse (Mus muscu | 86.18 | |
| d1e32a2 | 258 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 86.12 | |
| d1sxjc2 | 227 | Replication factor C3 {Baker's yeast (Saccharomyce | 86.11 | |
| d1xpua3 | 289 | Transcription termination factor Rho, ATPase domai | 86.07 | |
| d1kk1a3 | 195 | Initiation factor eIF2 gamma subunit, N-terminal ( | 86.0 | |
| d1sxje2 | 252 | Replication factor C5 {Baker's yeast (Saccharomyce | 85.63 | |
| d2atxa1 | 185 | RhoQ {Human (Homo sapiens) [TaxId: 9606]} | 85.2 | |
| d1wxqa1 | 319 | GTP-binding protein PH0525 {Pyrococcus horikoshii | 85.03 | |
| d1p9ra_ | 401 | Extracellular secretion NTPase EpsE {Vibrio choler | 84.95 | |
| d1zcba2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 84.95 | |
| d1w5sa2 | 287 | CDC6-like protein APE0152, N-terminal domain {Aero | 84.78 | |
| d1c1ya_ | 167 | Rap1A {Human (Homo sapiens) [TaxId: 9606]} | 84.77 | |
| d1azta2 | 221 | Transducin (alpha subunit) {Cow (Bos taurus) [TaxI | 84.16 | |
| d1u94a1 | 263 | RecA protein, ATPase-domain {Escherichia coli [Tax | 84.06 | |
| d1jwyb_ | 306 | Dynamin G domain {Dictyostelium discoideum [TaxId: | 83.94 | |
| d2ngra_ | 191 | CDC42 {Human (Homo sapiens) [TaxId: 9606]} | 83.87 | |
| d2akab1 | 299 | Dynamin G domain {Rat (Rattus norvegicus) [TaxId: | 83.78 | |
| d1m7ba_ | 179 | RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | 83.61 | |
| d1r6bx3 | 315 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 83.45 | |
| d1ni3a1 | 296 | YchF GTP-binding protein N-terminal domain {Fissio | 83.3 | |
| d1deka_ | 241 | Deoxynucleoside monophosphate kinase {Bacteriophag | 82.32 | |
| d1g41a_ | 443 | HslU {Haemophilus influenzae [TaxId: 727]} | 81.89 | |
| d2dy1a2 | 267 | Elongation factor G (EF-G), N-terminal (G) domain | 81.84 | |
| d2c78a3 | 204 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 81.28 |
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=100.00 E-value=9.5e-50 Score=422.99 Aligned_cols=215 Identities=22% Similarity=0.349 Sum_probs=186.9
Q ss_pred eeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccC
Q 000979 603 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 682 (1202)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 682 (1202)
.++++||+++|. ++++|+||||+|++||+++|+||||||||||+|+|+|..+ +.+|+|.++|+++
T Consensus 6 ~I~v~nlsk~yg-------------~~~al~~vsl~v~~Ge~~~liGpsGaGKSTLl~~i~Gl~~--p~sG~I~i~g~~i 70 (239)
T d1v43a3 6 EVKLENLTKRFG-------------NFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEE--PTEGRIYFGDRDV 70 (239)
T ss_dssp CEEEEEEEEEET-------------TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC--CSEEEEEETTEEC
T ss_pred eEEEEEEEEEEC-------------CEEEEcceeEEECCCCEEEEECCCCChHHHHHHHHHcCCC--CCCCEEEEcceec
Confidence 488999999883 4679999999999999999999999999999999999877 4589999999987
Q ss_pred Cc-ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHH
Q 000979 683 KQ-ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQR 761 (1202)
Q Consensus 683 ~~-~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqr 761 (1202)
.. ...++.+|||+|++.++|.+||+||+.|.+.++ ..++++.+++++++++.++|.+..|+. +++||||||
T Consensus 71 ~~~~~~~r~ig~v~Q~~~l~~~ltv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSGGq~ 142 (239)
T d1v43a3 71 TYLPPKDRNISMVFQSYAVWPHMTVYENIAFPLKIK---KFPKDEIDKRVRWAAELLQIEELLNRY-----PAQLSGGQR 142 (239)
T ss_dssp TTSCGGGGTEEEEEC------CCCHHHHHHTTCC-----CCCHHHHHHHHHHHHHHTTCGGGTTSC-----TTTCCSSCH
T ss_pred ccCCcccceEEEEeechhhcccchHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhhhcCC-----hhhCCHHHH
Confidence 54 334567999999999999999999999876554 456777888899999999999988876 467999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhcceEEEEecCCEEEEEcC
Q 000979 762 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGP 840 (1202)
Q Consensus 762 qRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G~ 840 (1202)
|||+|||||+.+|+||+|||||+|||+.++..+++.|+++.++ |+|+|++|||+. ++.++|||+++|++ |+++..|+
T Consensus 143 QRvaiAraL~~~P~iLllDEPts~LD~~~~~~i~~ll~~l~~~~g~tii~vTHd~~-~a~~~~dri~vm~~-G~iv~~G~ 220 (239)
T d1v43a3 143 QRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQV-EAMTMGDRIAVMNR-GQLLQIGS 220 (239)
T ss_dssp HHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHH-HHHHHCSEEEEEET-TEEEEEEC
T ss_pred HHHHHHhhhccCCCceeecCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEEcC
Confidence 9999999999999999999999999999999999999999765 999999999986 68899999999985 89999999
Q ss_pred CC
Q 000979 841 LG 842 (1202)
Q Consensus 841 ~~ 842 (1202)
++
T Consensus 221 ~~ 222 (239)
T d1v43a3 221 PT 222 (239)
T ss_dssp HH
T ss_pred HH
Confidence 73
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=7e-50 Score=422.75 Aligned_cols=214 Identities=25% Similarity=0.363 Sum_probs=155.7
Q ss_pred eEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCC
Q 000979 604 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 683 (1202)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 683 (1202)
++++||+++|. ++++|+||||+|++||+++|+||||||||||+|+|+|..+ +.+|+|.++|+++.
T Consensus 1 Iev~nv~k~yg-------------~~~~l~~isl~i~~Gei~~liGpsGsGKSTLl~~i~Gl~~--p~sG~I~i~g~~i~ 65 (232)
T d2awna2 1 VQLQNVTKAWG-------------EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLET--ITSGDLFIGEKRMN 65 (232)
T ss_dssp EEEEEEEEEET-------------TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC--CSEEEEEESSSCCT
T ss_pred CEEEEEEEEEC-------------CEEEEeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCC--CCCCEEEECCEECC
Confidence 57899999883 4679999999999999999999999999999999999877 45999999999876
Q ss_pred c-ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHH
Q 000979 684 Q-ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRK 762 (1202)
Q Consensus 684 ~-~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrq 762 (1202)
. ...+|.+|||+|++.+++.+||+||+.|+..++. .+.++.+++++++++.++|.+..|+.+ ++|||||||
T Consensus 66 ~~~~~~r~ig~v~Q~~~l~~~~tv~eni~~~~~~~~---~~~~~~~~~v~~~l~~~~l~~~~~~~~-----~~LSGGqkQ 137 (232)
T d2awna2 66 DTPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAG---AKKEVINQRVNQVAEVLQLAHLLDRKP-----KALSGGQRQ 137 (232)
T ss_dssp TSCGGGTCEEEECSSCCC------------------------CHHHHHHHHHHHHC------------------------
T ss_pred CCchhhceeeeeccccccccchhHHHHHHHHHHHcC---CCHHHHHHHHHHHHHhCCChhhhhCCh-----hhCCHHHHH
Confidence 4 2346779999999999999999999999876553 334556678999999999999888864 579999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCCHHHHHhcceEEEEecCCEEEEEcCC
Q 000979 763 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPL 841 (1202)
Q Consensus 763 Rv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G~~ 841 (1202)
||+|||||+.+|++|+|||||+|||+.++..+++.|+++.+ .|+|||++||++. ++.++|||+++|+ +|+++..|++
T Consensus 138 RvaiAraL~~~P~illlDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~~-~a~~~~dri~vm~-~G~iv~~G~~ 215 (232)
T d2awna2 138 RVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQV-EAMTLADKIVVLD-AGRVAQVGKP 215 (232)
T ss_dssp --CHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHH-HHHHHCSEEEEEE-TTEEEEEECH
T ss_pred HHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEE-CCEEEEEeCH
Confidence 99999999999999999999999999999999999999864 5999999999986 6889999999998 4899999997
Q ss_pred C
Q 000979 842 G 842 (1202)
Q Consensus 842 ~ 842 (1202)
+
T Consensus 216 ~ 216 (232)
T d2awna2 216 L 216 (232)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Probab=100.00 E-value=4.5e-49 Score=418.72 Aligned_cols=215 Identities=26% Similarity=0.342 Sum_probs=193.0
Q ss_pred eeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccC
Q 000979 603 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 682 (1202)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 682 (1202)
.++++||+++|. ++++|+||||++++||+++|+||||||||||+|+|+|... +.+|+|.++|.++
T Consensus 3 ~i~v~nl~k~yg-------------~~~al~~vsl~i~~Ge~~~liG~sGaGKSTll~~i~gl~~--p~sG~I~~~g~~i 67 (240)
T d1g2912 3 GVRLVDVWKVFG-------------EVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEE--PSRGQIYIGDKLV 67 (240)
T ss_dssp EEEEEEEEEEET-------------TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSC--CSEEEEEETTEEE
T ss_pred cEEEEeEEEEEC-------------CEEEEcceeeEEcCCCEEEEECCCCChHHHHHHHHhcCCC--CCCCEEEECCEEe
Confidence 478999999883 4679999999999999999999999999999999999877 4589999999876
Q ss_pred Ccc-------cccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCC
Q 000979 683 KQE-------TFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSG 755 (1202)
Q Consensus 683 ~~~-------~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~ 755 (1202)
... ..++.+|||+|++.++|.+||+||+.++..++ ..+.++.+++++++++.+++.+..|+.+ ++
T Consensus 68 ~~~~~~~~~~~~~r~ig~v~Q~~~L~~~ltV~eni~~~~~~~---~~~~~e~~~~v~~~l~~~~l~~~~~~~p-----~~ 139 (240)
T d1g2912 68 ADPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLR---KVPRQEIDQRVREVAELLGLTELLNRKP-----RE 139 (240)
T ss_dssp EEGGGTEECCGGGSSEEEECSCCCCCTTSCHHHHHHHHHHHT---TCCHHHHHHHHHHHHHHHTCGGGTTCCG-----GG
T ss_pred cccchhhhcccccccceecccchhhcchhhhhHhhhhhHHHc---CCCHHHHHHHHHHHHHHcCChhHhcCCh-----hh
Confidence 321 13567999999999999999999999998765 3466778888999999999999888764 57
Q ss_pred CCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhcceEEEEecCCE
Q 000979 756 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQ 834 (1202)
Q Consensus 756 LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~ 834 (1202)
|||||||||+|||||+.+|+||||||||+|||+.++..+++.|+++.++ |.|||++|||++ ++.++|||+++|.+ |+
T Consensus 140 LSGGqkQRv~IAraL~~~P~iLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHd~~-~~~~~~drv~vm~~-G~ 217 (240)
T d1g2912 140 LSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQV-EAMTMGDRIAVMNR-GV 217 (240)
T ss_dssp SCHHHHHHHHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHH-HHHHHCSEEEEEET-TE
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEecCCCcccCHHHHHHHHHHHHHHHhccCCEEEEEcCCHH-HHHHhCCEEEEEEC-CE
Confidence 9999999999999999999999999999999999999999999999766 999999999986 68899999999985 89
Q ss_pred EEEEcCCC
Q 000979 835 EIYVGPLG 842 (1202)
Q Consensus 835 ~~~~G~~~ 842 (1202)
++..|+++
T Consensus 218 iv~~G~~~ 225 (240)
T d1g2912 218 LQQVGSPD 225 (240)
T ss_dssp EEEEECHH
T ss_pred EEEEcCHH
Confidence 99999973
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=100.00 E-value=1.8e-49 Score=421.00 Aligned_cols=217 Identities=27% Similarity=0.385 Sum_probs=193.3
Q ss_pred eeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccC
Q 000979 603 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 682 (1202)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 682 (1202)
.++++||+++|+ .++..+|+||||+|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++
T Consensus 3 ~i~v~nlsk~y~-----------~g~~~aL~~vsl~i~~Ge~~~iiG~sGsGKSTll~~i~gl~~--p~~G~I~~~g~~i 69 (242)
T d1oxxk2 3 RIIVKNVSKVFK-----------KGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDV--PSTGELYFDDRLV 69 (242)
T ss_dssp CEEEEEEEEEEG-----------GGTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSC--CSEEEEEETTEEE
T ss_pred EEEEEeEEEEEC-----------CCCEEEEeceEEEECCCCEEEEECCCCCcHHHHHHHHHcCcC--CCCceEEECCEEe
Confidence 478999999994 234679999999999999999999999999999999999877 4589999999876
Q ss_pred Cc------ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCC
Q 000979 683 KQ------ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGL 756 (1202)
Q Consensus 683 ~~------~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~L 756 (1202)
.. ...++.+|||+|++.++|.+||+||+.|+...+ ..+.++.+++++++++.+||.+..|... ++|
T Consensus 70 ~~~~~~~~~~~rr~ig~vfQ~~~L~p~ltv~eni~~~l~~~---~~~~~~~~~~v~~~l~~~gL~~~~~~~p-----~~L 141 (242)
T d1oxxk2 70 ASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNM---KMSKEEIRKRVEEVAKILDIHHVLNHFP-----REL 141 (242)
T ss_dssp EETTEESSCGGGSCEEEEETTSCCCTTSCHHHHHHGGGTTS---SCCHHHHHHHHHHHHHHTTCGGGTTSCG-----GGS
T ss_pred ecCchhhcchhhccceEEeccccccccccHHHHhhhhhHhh---cCCHHHHHHHHHHHHhhcChHhhhhCCh-----hhC
Confidence 42 223567999999999999999999999986543 4567778889999999999998888764 579
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhcceEEEEecCCEE
Q 000979 757 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQE 835 (1202)
Q Consensus 757 SgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~ 835 (1202)
||||||||+|||||+.+|++|||||||+|||+.++..+++.|+++.++ |.|+|++|||++ ++.++|||+++|++ |++
T Consensus 142 SGGqkQRvaiARaL~~~P~llllDEPt~~LD~~~~~~i~~~i~~l~~~~g~tvi~vTHd~~-~~~~~~dri~vm~~-G~i 219 (242)
T d1oxxk2 142 SGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPA-DIFAIADRVGVLVK-GKL 219 (242)
T ss_dssp CHHHHHHHHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHH-HHHHHCSEEEEEET-TEE
T ss_pred CHHHHhHHHHHhHHhhcccceeecCCccCCCHHHHHHHHHHHHHHHhccCCEEEEEECCHH-HHHHhCCEEEEEEC-CEE
Confidence 999999999999999999999999999999999999999999999655 999999999986 68899999999985 899
Q ss_pred EEEcCCC
Q 000979 836 IYVGPLG 842 (1202)
Q Consensus 836 ~~~G~~~ 842 (1202)
+..|+++
T Consensus 220 v~~g~~~ 226 (242)
T d1oxxk2 220 VQVGKPE 226 (242)
T ss_dssp EEEECHH
T ss_pred EEEcCHH
Confidence 9999973
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=7.4e-49 Score=417.03 Aligned_cols=219 Identities=22% Similarity=0.287 Sum_probs=193.0
Q ss_pred eEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCC
Q 000979 604 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 683 (1202)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 683 (1202)
++++||+++|... ....++|+||||+|++||+++|+||||||||||+++|+|..+ +.+|+|.++|+++.
T Consensus 2 i~v~nlsk~y~~~---------~~~~~al~~vsl~i~~Ge~~~iiG~sGsGKSTLl~~i~Gl~~--p~sG~I~~~g~~i~ 70 (240)
T d3dhwc1 2 IKLSNITKVFHQG---------TRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLER--PTEGSVLVDGQELT 70 (240)
T ss_dssp EEEEEEEEEEECS---------SCEEEEEEEEEEEECSSCEEEEEESTTSSHHHHHHHHTTSSC--CSEEEEEETTEEEC
T ss_pred EEEEeEEEEeCCC---------CeeEEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHcCCcc--ccCCceEEcCeEee
Confidence 6789999999632 133568999999999999999999999999999999999877 45899999999864
Q ss_pred c------ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCC
Q 000979 684 Q------ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLS 757 (1202)
Q Consensus 684 ~------~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LS 757 (1202)
. ..+|+.+|||+|++.+++.+||+||+.++..++. .+.++.+++++++++.+||.+..|... ++||
T Consensus 71 ~~~~~~~~~~rr~ig~VfQ~~~l~~~~tv~eni~~~l~~~~---~~~~~~~~~v~~~L~~vgL~~~~~~~~-----~~LS 142 (240)
T d3dhwc1 71 TLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDN---TPKDEVKRRVTELLSLVGLGDKHDSYP-----SNLS 142 (240)
T ss_dssp TTCHHHHHHHHHHEEECCSSCCCCTTSBHHHHHHHHHHTTT---CCTTHHHHHHHHHHHHHSTTTTTSSCB-----SCCC
T ss_pred eCChhhhhhhhccccccccccccCCCccHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCchhhhCCh-----hhCC
Confidence 3 1245679999999999999999999999887653 344566778999999999998887763 5799
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhcceEEEEecCCEEE
Q 000979 758 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEI 836 (1202)
Q Consensus 758 gGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~ 836 (1202)
|||||||+|||||+.+|++|||||||+|||+.++..+++.|+++.++ |.|||++|||+. ++..+|||+++|++ |+++
T Consensus 143 GG~~QRvaiAraL~~~P~lLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHdl~-~~~~~~dri~vl~~-G~iv 220 (240)
T d3dhwc1 143 GGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRRLGLTILLITHEMD-VVKRICDCVAVISN-GELI 220 (240)
T ss_dssp HHHHHHHHHHHHHHTCCSEEEEESGGGSSCHHHHHHHHHHHHHHHHHHCCEEEEEBSCHH-HHHHHCSEEEEEET-TEEE
T ss_pred HHHHHHHHHhhhhccCCCeEEeccccccCCHHHhhHHHHHHHHHHhccCCEEEEEcCCHH-HHHHhCCEEEEEEC-CEEE
Confidence 99999999999999999999999999999999999999999999766 999999999986 67889999999985 8999
Q ss_pred EEcCCCc
Q 000979 837 YVGPLGR 843 (1202)
Q Consensus 837 ~~G~~~~ 843 (1202)
+.|++++
T Consensus 221 ~~G~~~e 227 (240)
T d3dhwc1 221 EQDTVSE 227 (240)
T ss_dssp EEEETTT
T ss_pred EECCHHH
Confidence 9999864
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=2.4e-48 Score=410.99 Aligned_cols=219 Identities=23% Similarity=0.361 Sum_probs=190.6
Q ss_pred eEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCC
Q 000979 604 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 683 (1202)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 683 (1202)
++++||+++|+.. .....+|+||||+|++||++||+|||||||||||++|+|... +.+|+|.++|.++.
T Consensus 2 I~i~nlsk~y~~~---------~~~~~al~~isl~i~~Ge~~~iiG~sGsGKSTLl~~i~gl~~--p~sG~I~~~g~~i~ 70 (230)
T d1l2ta_ 2 IKLKNVTKTYKMG---------EEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDK--PTEGEVYIDNIKTN 70 (230)
T ss_dssp EEEEEEEEEEEET---------TEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEECT
T ss_pred EEEEeEEEEeCCC---------CeeEEEEeceEEEEcCCCEEEEECCCCCCcchhhHhccCCCC--CCcceeEECCEEcC
Confidence 6789999999632 123568999999999999999999999999999999999877 45999999999875
Q ss_pred cc---c----ccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCCCCCC
Q 000979 684 QE---T----FARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP-LRQSLVGLPGVSG 755 (1202)
Q Consensus 684 ~~---~----~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~-~~~~~~~~~~~~~ 755 (1202)
.. . .++.+|||+|++.++|.+||+||+.++..++.....+.+++++++.++++.++|.+ ..+.. +.+
T Consensus 71 ~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----p~~ 145 (230)
T d1l2ta_ 71 DLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHK-----PNQ 145 (230)
T ss_dssp TCCHHHHHHHHHHHEEEECTTCCCCTTSCHHHHHHHHHHTCCSSCCCHHHHHHHHHHHHHHTTCCGGGTTCC-----GGG
T ss_pred cCChhhcchhhcceEEEEecchhhCcCccHHHHHhHHHHHhccCCCCHHHHHHHHHHHHHhhchhhhhhcCC-----hhh
Confidence 31 1 23569999999999999999999999988765556677778888999999999975 45554 357
Q ss_pred CCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhcceEEEEecCCE
Q 000979 756 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQ 834 (1202)
Q Consensus 756 LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~ 834 (1202)
|||||||||+|||||+.+|+||||||||+|||+.++..+++.|+++.++ |+|||++|||++ +.++|||+++|.+ |+
T Consensus 146 LSGGqkQRvaIAraL~~~P~lLllDEPTs~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~~--~a~~~drv~~m~~-G~ 222 (230)
T d1l2ta_ 146 LSGGQQQRVAIARALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDIN--VARFGERIIYLKD-GE 222 (230)
T ss_dssp SCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEEECSCHH--HHTTSSEEEEEET-TE
T ss_pred CCHHHHHHHHHHhhhhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHhhCCEEEEECCCHH--HHHhCCEEEEEEC-CE
Confidence 9999999999999999999999999999999999999999999999765 999999999974 4589999999985 89
Q ss_pred EEEEcCC
Q 000979 835 EIYVGPL 841 (1202)
Q Consensus 835 ~~~~G~~ 841 (1202)
++..|++
T Consensus 223 Iv~~g~~ 229 (230)
T d1l2ta_ 223 VEREEKL 229 (230)
T ss_dssp EEEEEEC
T ss_pred EEEeccC
Confidence 9999875
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Probab=100.00 E-value=1.8e-48 Score=410.44 Aligned_cols=210 Identities=21% Similarity=0.280 Sum_probs=186.5
Q ss_pred eEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCC
Q 000979 604 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 683 (1202)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 683 (1202)
++++||+++|. + .+|+||||+|++||+++|+||||||||||+|+|+|... +.+|+|.++|.++.
T Consensus 2 i~v~nlsk~y~-------------~-~aL~~vs~~i~~Ge~~~liGpsGaGKSTll~~l~Gl~~--p~sG~I~~~G~~i~ 65 (229)
T d3d31a2 2 IEIESLSRKWK-------------N-FSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHV--PDSGRILLDGKDVT 65 (229)
T ss_dssp EEEEEEEEECS-------------S-CEEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSC--CSEEEEEETTEECT
T ss_pred EEEEEEEEEeC-------------C-EEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCcC--CCCCEEEEccEecc
Confidence 67899999873 1 37999999999999999999999999999999999877 45999999999886
Q ss_pred c-ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHH
Q 000979 684 Q-ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRK 762 (1202)
Q Consensus 684 ~-~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrq 762 (1202)
. ...++.+|||+|++.++|.+||+||+.|+..++... . +++++++++.+++.+..|+.+ .+|||||||
T Consensus 66 ~~~~~~r~ig~v~Q~~~l~~~~tV~enl~~~~~~~~~~---~---~~~~~~~l~~~~l~~~~~~~~-----~~LSGG~~Q 134 (229)
T d3d31a2 66 DLSPEKHDIAFVYQNYSLFPHMNVKKNLEFGMRMKKIK---D---PKRVLDTARDLKIEHLLDRNP-----LTLSGGEQQ 134 (229)
T ss_dssp TSCHHHHTCEEECTTCCCCTTSCHHHHHHHHHHHHCCC---C---HHHHHHHHHHTTCTTTTTSCG-----GGSCHHHHH
T ss_pred ccchhHhcceeeccccccCccccHHHHHHHHHhhcccc---H---HHHHHHHHHHhcchhhHhCCh-----hhCCHHHhc
Confidence 5 234567999999999999999999999998766422 2 235889999999999888764 579999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCCHHHHHhcceEEEEecCCEEEEEcCC
Q 000979 763 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPL 841 (1202)
Q Consensus 763 Rv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G~~ 841 (1202)
||+|||||+.+|++|||||||+|||+.++..+++.|+++.+ .|.|||++||++. ++.++|||+++|++ |+++..|++
T Consensus 135 RvaiAraL~~~P~iLllDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~vtHd~~-~~~~~~drv~vm~~-G~iv~~g~~ 212 (229)
T d3d31a2 135 RVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQT-EARIMADRIAVVMD-GKLIQVGKP 212 (229)
T ss_dssp HHHHHHHTTSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHH-HHHHHCSEEEEESS-SCEEEEECH
T ss_pred chhhhhhhhccCCceeecCCCcCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCCHH-HHHHhCCEEEEEEC-CEEEEEcCH
Confidence 99999999999999999999999999999999999999965 4999999999986 68899999999985 899999997
Q ss_pred C
Q 000979 842 G 842 (1202)
Q Consensus 842 ~ 842 (1202)
+
T Consensus 213 ~ 213 (229)
T d3d31a2 213 E 213 (229)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=3.3e-46 Score=399.63 Aligned_cols=215 Identities=23% Similarity=0.318 Sum_probs=193.2
Q ss_pred eeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccC
Q 000979 603 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 682 (1202)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 682 (1202)
.+.++||+++| +++++|+||||++++||++||+||||||||||+|+|+|... +.+|+|.++|.++
T Consensus 2 aI~v~nl~k~y-------------g~~~vl~~vs~~v~~Gei~glvG~nGaGKSTLl~~l~G~~~--p~~G~i~i~G~~i 66 (238)
T d1vpla_ 2 AVVVKDLRKRI-------------GKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIK--PSSGIVTVFGKNV 66 (238)
T ss_dssp CEEEEEEEEEE-------------TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSC--CSEEEEEETTEET
T ss_pred CEEEEeEEEEE-------------CCEEEEccceeEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCCEEEECcEec
Confidence 47889999988 45779999999999999999999999999999999999877 4599999999986
Q ss_pred Cc--ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHH
Q 000979 683 KQ--ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQ 760 (1202)
Q Consensus 683 ~~--~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGq 760 (1202)
.. ...++.+|||||++.+++.+|+.||+.|...++. .+..+.++.++++++.+++.+..+..+ +.|||||
T Consensus 67 ~~~~~~~~~~i~~vpq~~~~~~~ltv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~lSgG~ 138 (238)
T d1vpla_ 67 VEEPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYA---SSSSEIEEMVERATEIAGLGEKIKDRV-----STYSKGM 138 (238)
T ss_dssp TTCHHHHHTTEEEECTTCCCCTTSBHHHHHHHHHHHHC---CCHHHHHHHHHHHHHHHCCGGGGGSBG-----GGCCHHH
T ss_pred ccChHHHHhhEeEeeeccccCCCccHHHHHHHHHHhcC---CCHHHHHHHHHHHHHhCCCHHHHhhhh-----hhCCHHH
Confidence 43 2456789999999999999999999999887653 345666778899999999998888775 4799999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCCEEEEEcC
Q 000979 761 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGP 840 (1202)
Q Consensus 761 rqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G~ 840 (1202)
|||++|||||+++|++|+|||||+|||+.++..++++|++++++|+|||++||+++ ++..+|||+++|++ |++++.|+
T Consensus 139 ~qrv~iA~al~~~p~illLDEPt~gLD~~~~~~i~~~i~~~~~~g~tii~~tH~l~-~~~~~~drv~vl~~-G~iv~~g~ 216 (238)
T d1vpla_ 139 VRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNML-EVEFLCDRIALIHN-GTIVETGT 216 (238)
T ss_dssp HHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHH-HHTTTCSEEEEEET-TEEEEEEE
T ss_pred HHHHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEEcC
Confidence 99999999999999999999999999999999999999999989999999999986 68889999999985 89999999
Q ss_pred CC
Q 000979 841 LG 842 (1202)
Q Consensus 841 ~~ 842 (1202)
++
T Consensus 217 ~~ 218 (238)
T d1vpla_ 217 VE 218 (238)
T ss_dssp HH
T ss_pred HH
Confidence 74
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=6.4e-46 Score=401.73 Aligned_cols=216 Identities=20% Similarity=0.240 Sum_probs=188.7
Q ss_pred eeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccC
Q 000979 603 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 682 (1202)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 682 (1202)
.++++||+++| ++.++|+||||+|++||++||+||||||||||+++|+|..+ +.+|+|.++|+++
T Consensus 2 ~Lev~nl~k~y-------------g~~~al~~vs~~i~~GEi~~iiG~sGsGKSTLl~~i~Gl~~--p~~G~I~~~G~~i 66 (258)
T d1b0ua_ 2 KLHVIDLHKRY-------------GGHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEK--PSEGAIIVNGQNI 66 (258)
T ss_dssp CEEEEEEEEEE-------------TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSC--CSEEEEEETTEEC
T ss_pred eEEEEEEEEEE-------------CCEEEEcceeeEEcCCCEEEEECCCCCcHHHHHHHHHcCcc--CCCCCEEECCEEe
Confidence 37899999988 34579999999999999999999999999999999999877 4589999999986
Q ss_pred Ccc----------------cccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCcc-cc
Q 000979 683 KQE----------------TFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPL-RQ 745 (1202)
Q Consensus 683 ~~~----------------~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~-~~ 745 (1202)
... ..++.+|||+|++.+++.+||.||+.++.... ...+.++.++++.++++.+++.+. .+
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~r~~ig~vfQ~~~l~~~~tv~env~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~~~~ 144 (258)
T d1b0ua_ 67 NLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQV--LGLSKHDARERALKYLAKVGIDERAQG 144 (258)
T ss_dssp CEEECTTSSEEESCHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHT--TCCCHHHHHHHHHHHHHHTTCCHHHHT
T ss_pred ccCCccchhcccccHhHHHHHhcceEEEEechhhccchhcchhhhhhHHHh--cCCCHHHHHHHHHHHHHHcCCchhhhc
Confidence 421 24467999999999999999999999875322 234566777889999999999764 34
Q ss_pred ccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcce
Q 000979 746 SLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDE 825 (1202)
Q Consensus 746 ~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~ 825 (1202)
+. +.+|||||||||+|||||+.+|++|+|||||+|||+.++..+++.|++++++|+|||++|||+. ++..+|||
T Consensus 145 ~~-----p~~LSGG~~QRv~iAraL~~~P~llilDEPT~gLD~~~~~~i~~ll~~l~~~g~til~vtHdl~-~~~~~adr 218 (258)
T d1b0ua_ 145 KY-----PVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMG-FARHVSSH 218 (258)
T ss_dssp SC-----GGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHH-HHHHHCSE
T ss_pred cC-----cccccHHHHHHHHHHHHHhcCCCEEEeccccccCCHHHHHHHHHhhhhhcccCCceEEEeCCHH-HHHHhCCE
Confidence 43 3579999999999999999999999999999999999999999999999988999999999986 68889999
Q ss_pred EEEEecCCEEEEEcCCC
Q 000979 826 LFLMKRGGQEIYVGPLG 842 (1202)
Q Consensus 826 v~~l~~gG~~~~~G~~~ 842 (1202)
+++|++ |++++.|+++
T Consensus 219 i~vm~~-G~iv~~g~~~ 234 (258)
T d1b0ua_ 219 VIFLHQ-GKIEEEGDPE 234 (258)
T ss_dssp EEEEET-TEEEEEECHH
T ss_pred EEEEEC-CEEEEEcCHH
Confidence 999985 8999999974
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Probab=100.00 E-value=6.8e-46 Score=398.15 Aligned_cols=216 Identities=22% Similarity=0.319 Sum_probs=185.0
Q ss_pred ceeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCcc
Q 000979 602 HSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP 681 (1202)
Q Consensus 602 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 681 (1202)
.-++++||+++| +++++|+||||+|++||+++|+||||||||||+|+|+|..+ +.+|+|.++|.+
T Consensus 5 ~~Lev~~l~k~y-------------g~~~al~~vs~~i~~Gei~~liGpnGaGKSTl~~~i~Gl~~--p~~G~I~~~G~~ 69 (240)
T d1ji0a_ 5 IVLEVQSLHVYY-------------GAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVR--AQKGKIIFNGQD 69 (240)
T ss_dssp EEEEEEEEEEEE-------------TTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEE
T ss_pred eEEEEeeEEEEE-------------CCEEEEeeeeEEECCCCEEEEECCCCCcHHHHHHHHhCCCC--CCccEEEecccc
Confidence 357899999988 34679999999999999999999999999999999999877 458999999998
Q ss_pred CCccc----ccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHc-CCCccccccccCCCCCCC
Q 000979 682 KKQET----FARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELV-ELNPLRQSLVGLPGVSGL 756 (1202)
Q Consensus 682 ~~~~~----~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l-~l~~~~~~~~~~~~~~~L 756 (1202)
+.... .+..++|+||+..+++.+||+||+.+.+..+. ..+..++.++++++.+ ++.+..++.+ ++|
T Consensus 70 i~~~~~~~~~r~gi~~~~q~~~l~~~ltv~en~~~~~~~~~----~~~~~~~~~~~~~~~~~~l~~~~~~~~-----~~L 140 (240)
T d1ji0a_ 70 ITNKPAHVINRMGIALVPEGRRIFPELTVYENLMMGAYNRK----DKEGIKRDLEWIFSLFPRLKERLKQLG-----GTL 140 (240)
T ss_dssp CTTCCHHHHHHTTEEEECSSCCCCTTSBHHHHHHGGGTTCC----CSSHHHHHHHHHHHHCHHHHTTTTSBS-----SSS
T ss_pred cccccHHHHHHhcccccCcccccCCcccHHHHHHHHHHhcC----CHHHHHHHHHHHHHHhhChHHHHhCch-----hhC
Confidence 75421 23358999999999999999999987764332 1223344566777766 6777777764 479
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCCEEE
Q 000979 757 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEI 836 (1202)
Q Consensus 757 SgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~ 836 (1202)
||||||||+|||||+.+|++|+|||||+|||+.++..+++.|++++++|+|||++||+++ ++.++|||+++|++ |+++
T Consensus 141 SGG~~Qrv~iAraL~~~P~lLllDEPt~gLD~~~~~~i~~~i~~l~~~g~til~~tH~l~-~~~~~~drv~vl~~-G~iv 218 (240)
T d1ji0a_ 141 SGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNAL-GALKVAHYGYVLET-GQIV 218 (240)
T ss_dssp CHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHH-HHHHHCSEEEEEET-TEEE
T ss_pred CHHHHHHHHHHHHHHhCCCEeeecCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEE
Confidence 999999999999999999999999999999999999999999999988999999999986 68899999999985 8999
Q ss_pred EEcCCCc
Q 000979 837 YVGPLGR 843 (1202)
Q Consensus 837 ~~G~~~~ 843 (1202)
+.|++++
T Consensus 219 ~~g~~~e 225 (240)
T d1ji0a_ 219 LEGKASE 225 (240)
T ss_dssp EEEEHHH
T ss_pred EEcCHHH
Confidence 9999854
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=1.4e-45 Score=400.15 Aligned_cols=219 Identities=24% Similarity=0.260 Sum_probs=189.7
Q ss_pred eeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccC
Q 000979 603 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 682 (1202)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 682 (1202)
-++.+||+++| +++++|+||||++++||++||+||||||||||+|+|+|..+ +.+|+|.++|.++
T Consensus 4 iL~v~nlsk~y-------------g~~~aL~~vs~~v~~Gei~~liG~nGaGKSTLl~~i~Gl~~--p~~G~I~~~g~~i 68 (254)
T d1g6ha_ 4 ILRTENIVKYF-------------GEFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLK--ADEGRVYFENKDI 68 (254)
T ss_dssp EEEEEEEEEEE-------------TTEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEEC
T ss_pred eEEEEEEEEEE-------------CCeEEEcceEEEECCCCEEEEECCCCCcHHHHHHHHHCCCc--CCCcEEEECCEec
Confidence 37889999887 34679999999999999999999999999999999999877 4589999999987
Q ss_pred Cccc----ccceEEEeecCCCCCCCCCHHHHHHHHHHccC----------CCCCCHHHHHHHHHHHHHHcCCCccccccc
Q 000979 683 KQET----FARISGYCEQNDIHSPFVTIYESLLFSAWLRL----------SPEVDSETRKMFIDEVMELVELNPLRQSLV 748 (1202)
Q Consensus 683 ~~~~----~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~----------~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~ 748 (1202)
.... .++.++|+||++.+++.+||+||+.++...+. ......++..++++++++.+++.+..|+.+
T Consensus 69 ~~~~~~~~~~~gi~~v~Q~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 148 (254)
T d1g6ha_ 69 TNKEPAELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKA 148 (254)
T ss_dssp TTCCHHHHHHHTEEECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBG
T ss_pred cchhHHHHHHhcCCccCCccccCCCCeeeeeeeehhhhccccchhhhhhhcccccHHHHHHHHHHHHHhcCcchhccCch
Confidence 5422 23459999999999999999999988643221 111233445567889999999998888765
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEE
Q 000979 749 GLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFL 828 (1202)
Q Consensus 749 ~~~~~~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~ 828 (1202)
+.|||||||||+|||||+.+|++|+|||||+|||+.++..+++.|++++++|+|||++||+++ ++.++|||+++
T Consensus 149 -----~~LSgG~~Qrv~iAraL~~~P~llilDEPt~gLD~~~~~~i~~~i~~l~~~g~til~vsHdl~-~~~~~~Drv~v 222 (254)
T d1g6ha_ 149 -----GELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLD-IVLNYIDHLYV 222 (254)
T ss_dssp -----GGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCS-TTGGGCSEEEE
T ss_pred -----hhCCcHHHHHHHHHHHHHhCcCchhhcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHH-HHHHhCCEEEE
Confidence 479999999999999999999999999999999999999999999999888999999999998 68899999999
Q ss_pred EecCCEEEEEcCCCc
Q 000979 829 MKRGGQEIYVGPLGR 843 (1202)
Q Consensus 829 l~~gG~~~~~G~~~~ 843 (1202)
|++ |++++.|++++
T Consensus 223 m~~-G~iv~~g~~~e 236 (254)
T d1g6ha_ 223 MFN-GQIIAEGRGEE 236 (254)
T ss_dssp EET-TEEEEEEESHH
T ss_pred EeC-CEEEEEecHHH
Confidence 985 89999999854
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=100.00 E-value=1.6e-45 Score=389.26 Aligned_cols=193 Identities=23% Similarity=0.370 Sum_probs=174.1
Q ss_pred cceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCCc-ccccceEEEeecCCCCCCCCCHHHHHHH
Q 000979 634 GVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ-ETFARISGYCEQNDIHSPFVTIYESLLF 712 (1202)
Q Consensus 634 ~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~-~~~~~~~~~v~q~~~~~~~lTv~e~l~~ 712 (1202)
||||+++ ||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.. ...++.+|||+|++.++|.+||+||+.|
T Consensus 17 ~vs~~~~-~e~~~liGpnGaGKSTll~~i~Gl~~--p~~G~I~~~G~~i~~~~~~~r~ig~v~Q~~~l~~~ltV~enl~~ 93 (240)
T d2onka1 17 NVDFEMG-RDYCVLLGPTGAGKSVFLELIAGIVK--PDRGEVRLNGADITPLPPERRGIGFVPQDYALFPHLSVYRNIAY 93 (240)
T ss_dssp EEEEEEC-SSEEEEECCTTSSHHHHHHHHHTSSC--CSEEEEEETTEECTTSCTTTSCCBCCCSSCCCCTTSCHHHHHHT
T ss_pred EEEEEeC-CEEEEEECCCCChHHHHHHHHHcCCC--CCceEEEECCEECCcCCHHHcCceeeccchhhcccchhhHhhhh
Confidence 7999995 68999999999999999999999887 459999999998764 3346789999999999999999999998
Q ss_pred HHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHH
Q 000979 713 SAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 792 (1202)
Q Consensus 713 ~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~ 792 (1202)
+. + ..++.+++++++++++.+||.+..++.. ++|||||||||+|||||+.+|++|+|||||+|||+.++.
T Consensus 94 ~l--~---~~~~~~~~~~v~~~l~~~gl~~~~~~~~-----~~LSGG~kQRvaiAral~~~P~illlDEPts~LD~~~~~ 163 (240)
T d2onka1 94 GL--R---NVERVERDRRVREMAEKLGIAHLLDRKP-----ARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKG 163 (240)
T ss_dssp TC--T---TSCHHHHHHHHHHHHHTTTCTTTTTCCG-----GGSCHHHHHHHHHHHHHTTCCSSBEEESTTSSCCHHHHH
T ss_pred hh--c---ccCHHHHHHHHHHHHHhcCcHhhhhCCh-----hhCCHHHHHHHHHHHHHhccCCceEecCccccCCHHHHH
Confidence 63 2 3456677788999999999999888874 579999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhC-CCEEEEEecCCCHHHHHhcceEEEEecCCEEEEEcCC
Q 000979 793 IVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPL 841 (1202)
Q Consensus 793 ~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G~~ 841 (1202)
.+++.|+++.++ |.|||++||+++ ++.++|||+++|++ |+++..|++
T Consensus 164 ~i~~~i~~l~~~~g~tvi~vtHd~~-~~~~~adri~vm~~-G~ii~~G~~ 211 (240)
T d2onka1 164 VLMEELRFVQREFDVPILHVTHDLI-EAAMLADEVAVMLN-GRIVEKGKL 211 (240)
T ss_dssp HHHHHHHHHHHHHTCCEEEEESCHH-HHHHHCSEEEEEET-TEEEEEECH
T ss_pred HHHHHHHHHHHhcCCeEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEEecH
Confidence 999999999765 999999999986 68899999999985 899999997
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.4e-45 Score=395.03 Aligned_cols=212 Identities=27% Similarity=0.437 Sum_probs=175.5
Q ss_pred eeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccC
Q 000979 603 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 682 (1202)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 682 (1202)
+++|+||+|+|+. +++.+|+||||+|++||.+||+||||||||||+++|+|... +.+|+|.+||.++
T Consensus 1 eI~~~nvsf~Y~~-----------~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLl~ll~gl~~--p~~G~I~i~g~~i 67 (241)
T d2pmka1 1 DITFRNIRFRYKP-----------DSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYI--PENGQVLIDGHDL 67 (241)
T ss_dssp EEEEEEEEEESST-----------TSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEET
T ss_pred CeEEEEEEEEeCC-----------CCcceEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCC--CCCCEEEECCEEe
Confidence 4789999999952 34579999999999999999999999999999999999877 4589999999987
Q ss_pred Cc---ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcC-------CCccccccccCCC
Q 000979 683 KQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVE-------LNPLRQSLVGLPG 752 (1202)
Q Consensus 683 ~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~-------l~~~~~~~~~~~~ 752 (1202)
.. ..+|+.++||+|++.+++ .||+||+.++. +..+.++ +.+.++..+ +....++.++..+
T Consensus 68 ~~~~~~~lr~~i~~v~Q~~~lf~-~Ti~eNi~~~~-----~~~~~~~----~~~~~~~~~~~~~i~~~~~~~~t~i~~~g 137 (241)
T d2pmka1 68 ALADPNWLRRQVGVVLQDNVLLN-RSIIDNISLAN-----PGMSVEK----VIYAAKLAGAHDFISELREGYNTIVGEQG 137 (241)
T ss_dssp TTSCHHHHHHHEEEECSSCCCTT-SBHHHHHCTTS-----TTCCHHH----HHHHHHHHTCHHHHTTSTTGGGSBCSTTT
T ss_pred cccchhhhhceEEEEecccccCC-ccccccccccC-----ccccHHH----HHHHHHHHhhHHHHHhhhcchhhhcCCCC
Confidence 54 446788999999998875 69999998742 2233332 223333322 3344566666543
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecC
Q 000979 753 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 832 (1202)
Q Consensus 753 ~~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~g 832 (1202)
..|||||||||+|||||+++|+||+||||||+||+.++..+++.|+++. +|+|+|++||+++ ..+.||||++|+ +
T Consensus 138 -~~LSGGq~QRvalARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~-~~~Tvi~itH~l~--~~~~~D~i~vl~-~ 212 (241)
T d2pmka1 138 -AGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKIC-KGRTVIIIAHRLS--TVKNADRIIVME-K 212 (241)
T ss_dssp -TCCCHHHHHHHHHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHHH-TTSEEEEECSSGG--GGTTSSEEEEEE-T
T ss_pred -CccCHHHHHHHhhhhhhhcccchhhhhCCccccCHHHHHHHHHHHHHHh-CCCEEEEEECCHH--HHHhCCEEEEEE-C
Confidence 5799999999999999999999999999999999999999999999985 4899999999986 457899999998 5
Q ss_pred CEEEEEcCCC
Q 000979 833 GQEIYVGPLG 842 (1202)
Q Consensus 833 G~~~~~G~~~ 842 (1202)
|+++..|+++
T Consensus 213 G~Iv~~G~~~ 222 (241)
T d2pmka1 213 GKIVEQGKHK 222 (241)
T ss_dssp TEEEEEECHH
T ss_pred CEEEEECCHH
Confidence 8999999974
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=2.4e-44 Score=388.68 Aligned_cols=218 Identities=22% Similarity=0.317 Sum_probs=177.1
Q ss_pred ceeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCcc
Q 000979 602 HSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP 681 (1202)
Q Consensus 602 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 681 (1202)
+.++|+||+|+|+.. .++.+|+||||+|++||++||+||||||||||+++|+|... +.+|+|.+||.+
T Consensus 10 g~I~~~nvsf~Y~~~----------~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~li~gl~~--p~~G~I~i~g~~ 77 (251)
T d1jj7a_ 10 GLVQFQDVSFAYPNR----------PDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQ--PTGGQLLLDGKP 77 (251)
T ss_dssp CCEEEEEEEECCTTS----------TTCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEE
T ss_pred ceEEEEEEEEECCCC----------CCCEeEeceEEEEcCCCEEEEECCCCCcHHHHHHHHhcccC--CCcCEEEECCEe
Confidence 469999999999632 23468999999999999999999999999999999999887 458999999998
Q ss_pred CCc---ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHH-----HHHHHHHHcCCCccccccccCCCC
Q 000979 682 KKQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKM-----FIDEVMELVELNPLRQSLVGLPGV 753 (1202)
Q Consensus 682 ~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~-----~~~~~l~~l~l~~~~~~~~~~~~~ 753 (1202)
+.. ..+++.++||+|++.+++ .||+||+.++.. ......+..+ ...+.++ ++.+..++.++.. .
T Consensus 78 i~~~~~~~~r~~i~~v~Q~~~lf~-~tv~eni~~g~~----~~~~~~~~~~~~~~~~~~~~i~--~l~~g~~~~i~~~-~ 149 (251)
T d1jj7a_ 78 LPQYEHRYLHRQVAAVGQEPQVFG-RSLQENIAYGLT----QKPTMEEITAAAVKSGAHSFIS--GLPQGYDTEVDEA-G 149 (251)
T ss_dssp GGGBCHHHHHHHEEEECSSCCCCS-SBHHHHHHCSCS----SCCCHHHHHHHHHHHTCHHHHH--TSTTGGGCBCCSS-C
T ss_pred cchhhhHHHHHHhhhccccccccC-cchhhhhhhhhc----ccchHHHHHHHHHHHHHHHHHH--hccccchhhHhcc-C
Confidence 754 346788999999998885 699999987532 1122222111 1122333 3444556666543 3
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhcceEEEEecC
Q 000979 754 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRG 832 (1202)
Q Consensus 754 ~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~g 832 (1202)
..|||||||||+|||||+++|+||+||||||+||+.++..+++.|+++.++ |+|+|++||+++ ..+.||||++|+ +
T Consensus 150 ~~LSGGqkQRvaiARal~~~p~ililDEpTs~LD~~~~~~i~~~l~~l~~~~~~Tvi~itH~l~--~~~~aDrI~vl~-~ 226 (251)
T d1jj7a_ 150 SQLSGGQRQAVALARALIRKPCVLILDDATSALDANSQLQVEQLLYESPERYSRSVLLITQHLS--LVEQADHILFLE-G 226 (251)
T ss_dssp SSSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHTCGGGGGCEEEEECSCHH--HHHTCSEEEEEE-T
T ss_pred ccCChhHceEEEEeeccccCCcEEEecCcCcccChhhHHHHHHHHHHHhhhcCCEEEEEeCCHH--HHHhCCEEEEEE-C
Confidence 579999999999999999999999999999999999999999999998654 899999999974 567899999998 5
Q ss_pred CEEEEEcCCC
Q 000979 833 GQEIYVGPLG 842 (1202)
Q Consensus 833 G~~~~~G~~~ 842 (1202)
|+++..|+++
T Consensus 227 G~iv~~Gt~~ 236 (251)
T d1jj7a_ 227 GAIREGGTHQ 236 (251)
T ss_dssp TEEEEEECHH
T ss_pred CEEEEECCHH
Confidence 8999999974
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=100.00 E-value=1.2e-43 Score=382.59 Aligned_cols=215 Identities=25% Similarity=0.398 Sum_probs=179.1
Q ss_pred CCceeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcC
Q 000979 600 EPHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISG 679 (1202)
Q Consensus 600 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g 679 (1202)
..+.++++||+|+|+. ..+.+|+||||+|++||++||+||||||||||+++|+|... +.+|+|.++|
T Consensus 13 ~~g~I~~~nvsf~Y~~-----------~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~--p~~G~I~i~g 79 (255)
T d2hyda1 13 KQGRIDIDHVSFQYND-----------NEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYD--VTSGQILIDG 79 (255)
T ss_dssp CSCCEEEEEEEECSCS-----------SSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSC--CSEEEEEETT
T ss_pred CCCEEEEEEEEEEeCC-----------CCCcceeceEEEEcCCCEEEEECCCCCcHHHHHHHHHhcCC--ccccccccCC
Confidence 4557999999999852 23468999999999999999999999999999999999877 4589999999
Q ss_pred ccCCc---ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCC-------cccccccc
Q 000979 680 YPKKQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELN-------PLRQSLVG 749 (1202)
Q Consensus 680 ~~~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-------~~~~~~~~ 749 (1202)
.++.. ..+|+.++||+|++.+++ .||+||+.++. +..+.++ +.++++..++. +..|+.++
T Consensus 80 ~~i~~~~~~~lr~~i~~v~Q~~~lf~-~Ti~eNi~~g~-----~~~~~~~----~~~al~~~~l~~~i~~lp~gl~t~i~ 149 (255)
T d2hyda1 80 HNIKDFLTGSLRNQIGLVQQDNILFS-DTVKENILLGR-----PTATDEE----VVEAAKMANAHDFIMNLPQGYDTEVG 149 (255)
T ss_dssp EEGGGSCHHHHHHTEEEECSSCCCCS-SBHHHHHGGGC-----SSCCHHH----HHHHHHHTTCHHHHHTSTTGGGCBCC
T ss_pred EEcccCCHHHhhheeeeeeccccCCC-CCHHHHHhccC-----cCCCHHH----HHHHHHHhCCHHHHHhccccccchhc
Confidence 98754 456788999999998875 69999998752 2223332 44555555543 34566666
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEE
Q 000979 750 LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLM 829 (1202)
Q Consensus 750 ~~~~~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l 829 (1202)
..+ ..||||||||++|||||+++|+||+||||||+||+.++..+++.|+++. +++|+|++||+++ ....||||++|
T Consensus 150 ~~g-~~LSgGq~QRi~iARal~~~p~ililDEpts~LD~~t~~~i~~~l~~l~-~~~TvI~itH~~~--~~~~~D~ii~l 225 (255)
T d2hyda1 150 ERG-VKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLS-KDRTTLIVAHRLS--TITHADKIVVI 225 (255)
T ss_dssp GGG-TTSCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHT-TTSEEEEECSSGG--GTTTCSEEEEE
T ss_pred CCC-CCcCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHh-cCCEEEEEeCCHH--HHHhCCEEEEE
Confidence 543 5699999999999999999999999999999999999999999999885 4899999999986 45789999999
Q ss_pred ecCCEEEEEcCCC
Q 000979 830 KRGGQEIYVGPLG 842 (1202)
Q Consensus 830 ~~gG~~~~~G~~~ 842 (1202)
+ +|+++..|+++
T Consensus 226 ~-~G~iv~~G~~~ 237 (255)
T d2hyda1 226 E-NGHIVETGTHR 237 (255)
T ss_dssp E-TTEEEEEECHH
T ss_pred E-CCEEEEECCHH
Confidence 8 58999999974
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Probab=100.00 E-value=1.3e-44 Score=388.66 Aligned_cols=212 Identities=28% Similarity=0.412 Sum_probs=174.2
Q ss_pred eEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCC
Q 000979 604 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 683 (1202)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 683 (1202)
++++||+|+|+ +++.+|+||||++++||++||+||||||||||+++|+|... |.+|+|.+||.++.
T Consensus 2 le~knvsf~Y~------------~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~--p~~G~I~i~g~~i~ 67 (242)
T d1mv5a_ 2 LSARHVDFAYD------------DSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQ--PTAGEITIDGQPID 67 (242)
T ss_dssp EEEEEEEECSS------------SSSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSC--CSBSCEEETTEEST
T ss_pred EEEEEEEEECC------------CCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHHhhC--CCCCEEEECCEEec
Confidence 68999999985 22358999999999999999999999999999999999877 44899999999875
Q ss_pred c---ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCC-------CccccccccCCCC
Q 000979 684 Q---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVEL-------NPLRQSLVGLPGV 753 (1202)
Q Consensus 684 ~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l-------~~~~~~~~~~~~~ 753 (1202)
. ..+++.++||+|++.+++. ||+||+.++.. ...+.++ +.+.++..++ .+..++.++..+
T Consensus 68 ~~~~~~~r~~i~~v~Q~~~lf~~-ti~eNi~~~~~----~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~i~~~g- 137 (242)
T d1mv5a_ 68 NISLENWRSQIGFVSQDSAIMAG-TIRENLTYGLE----GDYTDED----LWQVLDLAFARSFVENMPDQLNTEVGERG- 137 (242)
T ss_dssp TTSCSCCTTTCCEECCSSCCCCE-EHHHHTTSCTT----SCSCHHH----HHHHHHHHTCTTTTTSSTTGGGCEESTTS-
T ss_pred cccHHHHHhheEEEccccccCCc-chhhheecccc----cccchhh----HHHHHHHHHhhhhhccCcccccccccCCC-
Confidence 4 4567889999999998875 99999976421 1223322 2333333333 334555666543
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCC
Q 000979 754 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGG 833 (1202)
Q Consensus 754 ~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG 833 (1202)
..|||||||||+|||||+++|+||+||||||+||+.++..+++.|+++. +|+|||++||+++ ....||||++|+ +|
T Consensus 138 ~~LSGGqkQRv~iARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~-~~~Tvi~itH~l~--~~~~~D~i~vl~-~G 213 (242)
T d1mv5a_ 138 VKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLM-KGRTTLVIAHRLS--TIVDADKIYFIE-KG 213 (242)
T ss_dssp BCCCHHHHHHHHHHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHHHHH-TTSEEEEECCSHH--HHHHCSEEEEEE-TT
T ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHc-CCCEEEEEECCHH--HHHhCCEEEEEE-CC
Confidence 4699999999999999999999999999999999999999999999986 5899999999975 456799999998 48
Q ss_pred EEEEEcCCCc
Q 000979 834 QEIYVGPLGR 843 (1202)
Q Consensus 834 ~~~~~G~~~~ 843 (1202)
+++..|++++
T Consensus 214 ~iv~~G~~~e 223 (242)
T d1mv5a_ 214 QITGSGKHNE 223 (242)
T ss_dssp EECCCSCHHH
T ss_pred EEEEECCHHH
Confidence 9999999753
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=2.7e-43 Score=380.93 Aligned_cols=215 Identities=22% Similarity=0.308 Sum_probs=176.8
Q ss_pred CceeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCc
Q 000979 601 PHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGY 680 (1202)
Q Consensus 601 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~ 680 (1202)
.+.++++||+|+|+. .+..+|+||||+|++||++||+||||||||||+++|+|... +.+|+|.+||.
T Consensus 11 ~g~I~~~nvsf~Y~~-----------~~~~~L~~isl~i~~Ge~iaivG~sGsGKSTLl~ll~gl~~--p~~G~I~i~g~ 77 (253)
T d3b60a1 11 TGDLEFRNVTFTYPG-----------REVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYD--IDEGHILMDGH 77 (253)
T ss_dssp CCCEEEEEEEECSSS-----------SSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTC--CSEEEEEETTE
T ss_pred ceEEEEEEEEEEeCC-----------CCCceeeceEEEEcCCCEEEEECCCCChHHHHHHHHhcccC--CCccEEEECCc
Confidence 456999999999862 23468999999999999999999999999999999999877 45899999999
Q ss_pred cCCc---ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCC-------ccccccccC
Q 000979 681 PKKQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELN-------PLRQSLVGL 750 (1202)
Q Consensus 681 ~~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-------~~~~~~~~~ 750 (1202)
++.. ..+++.++||+|++.+++ .|+++|+.++. +...+.++ ++++++..++. +-.++.++.
T Consensus 78 ~i~~~~~~~~r~~i~~v~Q~~~l~~-~ti~~n~~~~~----~~~~~~~~----i~~a~~~~~l~~~i~~l~~gl~t~~~~ 148 (253)
T d3b60a1 78 DLREYTLASLRNQVALVSQNVHLFN-DTVANNIAYAR----TEEYSREQ----IEEAARMAYAMDFINKMDNGLDTIIGE 148 (253)
T ss_dssp ETTTBCHHHHHHTEEEECSSCCCCS-SBHHHHHHTTT----TSCCCHHH----HHHHHHTTTCHHHHHHSTTGGGSBCCT
T ss_pred ccchhhhhhhhheEEEEeeccccCC-cchhhhhhhcC----cccCCHHH----HHHHHHHHhHHHHHHhccccchhhhcC
Confidence 8754 346778999999998775 69999998752 12233332 34444444432 234566654
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEe
Q 000979 751 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 830 (1202)
Q Consensus 751 ~~~~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~ 830 (1202)
. ...|||||||||+|||||+++|+||+||||||+||+.++..+++.|+++. +++|+|++||+++ ..+.||||++|+
T Consensus 149 ~-~~~LSGGqkQRvaiARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~-~~~Tvi~itH~l~--~~~~~D~v~vl~ 224 (253)
T d3b60a1 149 N-GVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQ-KNRTSLVIAHRLS--TIEQADEIVVVE 224 (253)
T ss_dssp T-SCSSCHHHHHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHH-TTSEEEEECSCGG--GTTTCSEEEEEE
T ss_pred C-CCCcCHHHHHHHHHHHHHhcCCCEEEeccccccCCHHHHHHHHHHHHHhc-cCCEEEEEECCHH--HHHhCCEEEEEE
Confidence 3 45799999999999999999999999999999999999999999999986 4899999999986 457899999998
Q ss_pred cCCEEEEEcCCC
Q 000979 831 RGGQEIYVGPLG 842 (1202)
Q Consensus 831 ~gG~~~~~G~~~ 842 (1202)
+ |+++..|+++
T Consensus 225 ~-G~Iv~~G~~~ 235 (253)
T d3b60a1 225 D-GIIVERGTHS 235 (253)
T ss_dssp T-TEEEEEECHH
T ss_pred C-CEEEEECCHH
Confidence 4 8999999974
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=2.3e-40 Score=354.11 Aligned_cols=195 Identities=23% Similarity=0.376 Sum_probs=167.8
Q ss_pred EeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCCc---ccccceEEEeecCCCCCCCCCHH
Q 000979 631 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ---ETFARISGYCEQNDIHSPFVTIY 707 (1202)
Q Consensus 631 iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~---~~~~~~~~~v~q~~~~~~~lTv~ 707 (1202)
+|+||||+|++||++||+||||||||||+++|+|..+ .+|+|.++|+++.. ...+...+|++|+.......+++
T Consensus 14 ~l~~isl~I~~Gei~~iiG~nGaGKSTLl~~l~Gl~~---~~G~I~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 90 (231)
T d1l7vc_ 14 RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTS---GKGSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFATPVW 90 (231)
T ss_dssp TSCSEEEEEETTCEEECBCCTTSSHHHHHHHHHTSCC---CSSEEEESSSBGGGSCHHHHHHHEEEECSCCCCCSSCBHH
T ss_pred eecCEEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC---CceEEEECCEECCcCCHHHHHhhceeeeccccCCccccHH
Confidence 4999999999999999999999999999999999753 36999999998644 22344679999988776778999
Q ss_pred HHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhh-------CCCEEEEe
Q 000979 708 ESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVA-------NPSIIFMD 780 (1202)
Q Consensus 708 e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~aL~~-------~p~illlD 780 (1202)
+++.+... .. .+++.++++++.+++.+..++.+ +.|||||||||+|||+|+. +|+||+||
T Consensus 91 ~~~~~~~~----~~----~~~~~~~~~~~~~~l~~~~~~~~-----~~LSgG~~Qrv~iA~al~~~~p~~~p~p~llllD 157 (231)
T d1l7vc_ 91 HYLTLHQH----DK----TRTELLNDVAGALALDDKLGRST-----NQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLD 157 (231)
T ss_dssp HHHHHHCS----CT----TCHHHHHHHHHHTTCTTTTTSBG-----GGCCHHHHHHHHHHHHHHHHCTTTCTTCCEEEES
T ss_pred HHhhhccc----hh----hHHHHHHHHHHhcCCHhHhCcCh-----hhcCHHHHHHHHHHHHHHhhCcccCCCCCEEEEc
Confidence 99887532 11 22345788999999998877764 5799999999999999997 77999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCCEEEEEcCCCc
Q 000979 781 EPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLGR 843 (1202)
Q Consensus 781 EPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G~~~~ 843 (1202)
|||+|||+.++..+.+.|++++++|+|||++||+++ ++.++|||+++|+ +|++++.|++++
T Consensus 158 EPt~gLD~~~~~~i~~~i~~l~~~g~tii~vtHdl~-~~~~~~dri~vl~-~G~iv~~G~~~e 218 (231)
T d1l7vc_ 158 EPMNSLDVAQQSALDKILSALCQQGLAIVMSSHDLN-HTLRHAHRAWLLK-GGKMLASGRREE 218 (231)
T ss_dssp SCSTTCCHHHHHHHHHHHHHHHHTTCEEEECCCCHH-HHHHHCSBCCBEE-TTEECCCSBHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHHCCEEEEEE-CCEEEEECCHHH
Confidence 999999999999999999999989999999999986 6899999999998 589999999754
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=4.3e-39 Score=353.37 Aligned_cols=189 Identities=21% Similarity=0.348 Sum_probs=153.7
Q ss_pred ceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCCcccccceEEEeecCCCCCCCCCHH
Q 000979 628 KLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIY 707 (1202)
Q Consensus 628 ~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~lTv~ 707 (1202)
++++|+||||+|++||++||+||||||||||+++|+|... +.+|.|.++|+ ++||+|++.+++ .||+
T Consensus 48 g~pvL~~isl~i~~Ge~vaivG~nGsGKSTLl~~i~Gl~~--p~~G~I~~~g~----------i~~v~Q~~~l~~-~tv~ 114 (281)
T d1r0wa_ 48 GNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELE--ASEGIIKHSGR----------VSFCSQFSWIMP-GTIK 114 (281)
T ss_dssp TCEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSC--CSEEEEECCSC----------EEEECSSCCCCS-EEHH
T ss_pred CCeEEeCeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCc--CCCcEEEECCE----------EEEEeccccccC-ceee
Confidence 3579999999999999999999999999999999999877 45899999882 799999998887 5999
Q ss_pred HHHHHHHHccCCCCCCHHHHHHHHHHHHHH-------cCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEe
Q 000979 708 ESLLFSAWLRLSPEVDSETRKMFIDEVMEL-------VELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMD 780 (1202)
Q Consensus 708 e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~-------l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~illlD 780 (1202)
||+.|+. ...... .+++++. ..+.+..++.++.. ...|||||||||+|||||+++|+||+||
T Consensus 115 eni~~~~------~~~~~~----~~~~~~~~~~~~~i~~l~~~~~~~~~~~-~~~LSgGqkQRv~lARaL~~~p~illLD 183 (281)
T d1r0wa_ 115 ENIIFGV------SYDEYR----YKSVVKACQLQQDITKFAEQDNTVLGEG-GVTLSGGQRARISLARAVYKDADLYLLD 183 (281)
T ss_dssp HHHTTTS------CCCHHH----HHHHHHHTTCHHHHTTSTTGGGCEECTT-CTTSCHHHHHHHHHHHHHHSCCSEEEEE
T ss_pred ccccccc------cccchH----HHHHHHHHHhHHHHHhchhhhhhhhhhh-ccCCCHHHHHHHHHHHHHHhCccchhhc
Confidence 9998753 122222 2222222 34444556655543 3469999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCCEEEEEcCCCc
Q 000979 781 EPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLGR 843 (1202)
Q Consensus 781 EPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G~~~~ 843 (1202)
|||++||+.++..+++.+.+..++|+|+|++||++ +..+.||||++|++ |++++.|++++
T Consensus 184 EPts~LD~~~~~~i~~~~~~~~~~~~tvi~itH~~--~~l~~aDrI~vl~~-G~i~~~Gt~~e 243 (281)
T d1r0wa_ 184 SPFGYLDVFTEEQVFESCVCKLMANKTRILVTSKM--EHLRKADKILILHQ-GSSYFYGTFSE 243 (281)
T ss_dssp SCCCSSCHHHHHHHHHHCCCCCTTTSEEEEECSCH--HHHHTCSEEEEEET-TEEEEEECHHH
T ss_pred CccccCCHHHHHHHHHHHHHHhhCCCEEEEEechH--HHHHhCCEEEEEEC-CEEEEECCHHH
Confidence 99999999999999876444345689999999997 45688999999984 89999999854
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Probab=100.00 E-value=2.6e-38 Score=330.79 Aligned_cols=196 Identities=19% Similarity=0.274 Sum_probs=161.2
Q ss_pred eeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccC
Q 000979 603 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 682 (1202)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 682 (1202)
.++++|+++.|+ +++|+||||++++||+++|+||||||||||+++|+|..+ |.+|+|.+||.++
T Consensus 2 ~lev~~ls~~y~--------------~~vl~~is~~i~~Gei~~l~G~NGsGKSTLl~~i~gl~~--p~~G~I~~~g~~i 65 (200)
T d1sgwa_ 2 KLEIRDLSVGYD--------------KPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLK--PLKGEIIYNGVPI 65 (200)
T ss_dssp EEEEEEEEEESS--------------SEEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSC--CSEEEEEETTEEG
T ss_pred eEEEEEEEEEeC--------------CeEEeceEEEEcCCCEEEEECCCCChHHHHHHHHhcccc--cCCCEEEECCEeh
Confidence 478999999873 258999999999999999999999999999999999877 4589999999987
Q ss_pred CcccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHH
Q 000979 683 KQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRK 762 (1202)
Q Consensus 683 ~~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrq 762 (1202)
.. .+..++|++|+..+++.+|++|++.+.+.++.. ..+. +.+.+.++.+++.+..+. +.+|||||||
T Consensus 66 ~~--~~~~i~~~~~~~~~~~~~t~~~~l~~~~~~~~~-~~~~----~~~~~~l~~~~~~~~~~~------~~~LSgG~~q 132 (200)
T d1sgwa_ 66 TK--VKGKIFFLPEEIIVPRKISVEDYLKAVASLYGV-KVNK----NEIMDALESVEVLDLKKK------LGELSQGTIR 132 (200)
T ss_dssp GG--GGGGEEEECSSCCCCTTSBHHHHHHHHHHHTTC-CCCH----HHHHHHHHHTTCCCTTSB------GGGSCHHHHH
T ss_pred hH--hcCcEEEEeecccCCCCcCHHHHHHHHHHhcCC-ccCH----HHHHHHHHHcCCcccccc------cCcCCCcHHH
Confidence 53 466789999999999999999999988776532 2222 225677788887664332 2479999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEec
Q 000979 763 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKR 831 (1202)
Q Consensus 763 Rv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~ 831 (1202)
|++|||||+.+|++++|||||+|||+.++..+++.|+++.+++.++|+++|+. .++||++.+|++
T Consensus 133 rv~ia~al~~~~~llllDEPt~gLD~~~~~~i~~~l~~~~~~~~~~ii~~~~~----l~~~D~~~~l~~ 197 (200)
T d1sgwa_ 133 RVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREE----LSYCDVNENLHK 197 (200)
T ss_dssp HHHHHHHTTSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESSC----CTTSSEEEEGGG
T ss_pred HHHHHHHHhcCCCEEEEcCcccccCHHHHHHHHHHHHHHHhCCCEEEEEEech----hhhcchhhheee
Confidence 99999999999999999999999999999999999999876544444444431 257999998865
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.91 E-value=2.2e-25 Score=234.49 Aligned_cols=126 Identities=21% Similarity=0.249 Sum_probs=87.9
Q ss_pred HHHHHhhhhhhhhhHHHHHHHHHhCCcccccccccCCcccccCccccchhhHHHHHhcCCeEeeeeCCCccccHHHHHHH
Q 000979 31 VYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQI 110 (1202)
Q Consensus 31 ~~~~~~~~~~~~~~~~v~~il~~lgL~~~~dT~VG~~~~~gLSGGQKqRvsIAraLv~~P~ILlLDEpTSGLDs~sa~~v 110 (1202)
.........+++.+++++++++.+||++.+|..++ .|||||||||+|||||+.+|+||+|||||||||+.++.++
T Consensus 95 ~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~-----~LSGGqkQRvaiAraL~~~P~illlDEPts~LD~~~~~~i 169 (232)
T d2awna2 95 FGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPK-----ALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQM 169 (232)
T ss_dssp ----------CHHHHHHHHHHHHC--------------------------CHHHHHHTCCSEEEEESTTTTSCHHHHHHH
T ss_pred HHHHHcCCCHHHHHHHHHHHHHhCCChhhhhCChh-----hCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHH
Confidence 33444556667888899999999999999999885 7999999999999999999999999999999999999999
Q ss_pred HHHHHHHhHhCCCEEEEEecCCChHHHhhhcceEEecCCcEEEEcCcchHHH
Q 000979 111 VNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLE 162 (1202)
Q Consensus 111 v~~L~~~a~~~~tTiIiaihQp~~s~~~~fD~IvvL~~G~vvy~G~~~el~~ 162 (1202)
++.++++.++.++|+|+++| -..++.+++|||++|.+|+++++|+++|+.+
T Consensus 170 ~~~l~~l~~~~g~tii~vTH-d~~~a~~~~dri~vm~~G~iv~~G~~~el~~ 220 (232)
T d2awna2 170 RIEISRLHKRLGRTMIYVTH-DQVEAMTLADKIVVLDAGRVAQVGKPLELYH 220 (232)
T ss_dssp HHHHHHHHHHSCCEEEEEES-CHHHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred HHHHHHHHHhcCCEEEEEeC-CHHHHHHhCCEEEEEECCEEEEEeCHHHHHh
Confidence 99999987777889888766 4458889999999999999999999999874
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Probab=99.91 E-value=2.2e-25 Score=235.81 Aligned_cols=126 Identities=21% Similarity=0.249 Sum_probs=112.2
Q ss_pred HHHHHhhhhhhhhhHHHHHHHHHhCCcccccccccCCcccccCccccchhhHHHHHhcCCeEeeeeCCCccccHHHHHHH
Q 000979 31 VYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQI 110 (1202)
Q Consensus 31 ~~~~~~~~~~~~~~~~v~~il~~lgL~~~~dT~VG~~~~~gLSGGQKqRvsIAraLv~~P~ILlLDEpTSGLDs~sa~~v 110 (1202)
...+......++.+++++++++.+||++.+|..++ .|||||||||+|||||+.+|+||+|||||||||+.+..++
T Consensus 104 ~~~~~~~~~~~e~~~~v~~~l~~~~l~~~~~~~p~-----~LSGGqkQRv~IAraL~~~P~iLllDEPt~~LD~~~~~~i 178 (240)
T d1g2912 104 FPLKLRKVPRQEIDQRVREVAELLGLTELLNRKPR-----ELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRM 178 (240)
T ss_dssp HHHHHTTCCHHHHHHHHHHHHHHHTCGGGTTCCGG-----GSCHHHHHHHHHHHHHHTCCSEEEEECTTTTSCHHHHHHH
T ss_pred hhHHHcCCCHHHHHHHHHHHHHHcCChhHhcCChh-----hCCHHHHHHHHHHHHHhcCCCEEEecCCCcccCHHHHHHH
Confidence 44444566678888999999999999999888874 7999999999999999999999999999999999999999
Q ss_pred HHHHHHHhHhCCCEEEEEecCCChHHHhhhcceEEecCCcEEEEcCcchHHH
Q 000979 111 VNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLE 162 (1202)
Q Consensus 111 v~~L~~~a~~~~tTiIiaihQp~~s~~~~fD~IvvL~~G~vvy~G~~~el~~ 162 (1202)
++.++++.++.|+|||+++| --.++.+.+|||++|.+|++++.|+++|+.+
T Consensus 179 ~~~l~~l~~~~g~tvi~vTH-d~~~~~~~~drv~vm~~G~iv~~G~~~el~~ 229 (240)
T d1g2912 179 RAELKKLQRQLGVTTIYVTH-DQVEAMTMGDRIAVMNRGVLQQVGSPDEVYD 229 (240)
T ss_dssp HHHHHHHHHHHTCEEEEEES-CHHHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred HHHHHHHHhccCCEEEEEcC-CHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 99999987766888888766 4447889999999999999999999999874
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Probab=99.91 E-value=2.9e-25 Score=234.80 Aligned_cols=143 Identities=22% Similarity=0.282 Sum_probs=121.2
Q ss_pred HHHHHHHhcCCCCCC-----------CHHHHHHHhhhhhhhhhHHHHHHHHHhCCcccccccccCCcccccCccccchhh
Q 000979 13 ELARREKAAGIKPDP-----------DIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVT 81 (1202)
Q Consensus 13 ~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~v~~il~~lgL~~~~dT~VG~~~~~gLSGGQKqRvs 81 (1202)
++.+.|+..|..+|. ++..-.......+++.+++++++|+.+||++.+|..++ +|||||||||+
T Consensus 76 ~~~~~rr~ig~VfQ~~~l~~~~tv~eni~~~l~~~~~~~~~~~~~v~~~L~~vgL~~~~~~~~~-----~LSGG~~QRva 150 (240)
T d3dhwc1 76 ELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPS-----NLSGGQKQRVA 150 (240)
T ss_dssp HHHHHHHHEEECCSSCCCCTTSBHHHHHHHHHHTTTCCTTHHHHHHHHHHHHHSTTTTTSSCBS-----CCCHHHHHHHH
T ss_pred hhhhhhccccccccccccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChh-----hCCHHHHHHHH
Confidence 455555668877762 22233333466778888999999999999998888874 79999999999
Q ss_pred HHHHHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHhHhCCCEEEEEecCCChHHHhhhcceEEecCCcEEEEcCcchHH
Q 000979 82 TGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVL 161 (1202)
Q Consensus 82 IAraLv~~P~ILlLDEpTSGLDs~sa~~vv~~L~~~a~~~~tTiIiaihQp~~s~~~~fD~IvvL~~G~vvy~G~~~el~ 161 (1202)
|||||+.+|+||+|||||||||+.++.++++.|+++.++.++|+|+++| ....+.+.+|||++|++|++++.|+++|+.
T Consensus 151 iAraL~~~P~lLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTH-dl~~~~~~~dri~vl~~G~iv~~G~~~ei~ 229 (240)
T d3dhwc1 151 IARALASNPKVLLCDEATSALDPATTRSILELLKDINRRLGLTILLITH-EMDVVKRICDCVAVISNGELIEQDTVSEVF 229 (240)
T ss_dssp HHHHHHTCCSEEEEESGGGSSCHHHHHHHHHHHHHHHHHHCCEEEEEBS-CHHHHHHHCSEEEEEETTEEEEEEETTTTT
T ss_pred HhhhhccCCCeEEeccccccCCHHHhhHHHHHHHHHHhccCCEEEEEcC-CHHHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 9999999999999999999999999999999999988766888888866 445778889999999999999999999975
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=99.91 E-value=4.4e-25 Score=232.90 Aligned_cols=120 Identities=19% Similarity=0.226 Sum_probs=109.5
Q ss_pred hhhhhhhhHHHHHHHHHhCCcccccccccCCcccccCccccchhhHHHHHhcCCeEeeeeCCCccccHHHHHHHHHHHHH
Q 000979 37 ATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQ 116 (1202)
Q Consensus 37 ~~~~~~~~~~v~~il~~lgL~~~~dT~VG~~~~~gLSGGQKqRvsIAraLv~~P~ILlLDEpTSGLDs~sa~~vv~~L~~ 116 (1202)
..++++.+++++++++.+||++.+|..+ .+|||||||||+|||||+.+|+||+|||||||||+.+..++++.+++
T Consensus 107 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSGGq~QRvaiAraL~~~P~iLllDEPts~LD~~~~~~i~~ll~~ 181 (239)
T d1v43a3 107 KFPKDEIDKRVRWAAELLQIEELLNRYP-----AQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKK 181 (239)
T ss_dssp CCCHHHHHHHHHHHHHHTTCGGGTTSCT-----TTCCSSCHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHcCChhhhcCCh-----hhCCHHHHHHHHHHhhhccCCCceeecCCcccCCHHHHHHHHHHHHH
Confidence 5556788899999999999999888877 47999999999999999999999999999999999999999999999
Q ss_pred HhHhCCCEEEEEecCCChHHHhhhcceEEecCCcEEEEcCcchHHH
Q 000979 117 NIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLE 162 (1202)
Q Consensus 117 ~a~~~~tTiIiaihQp~~s~~~~fD~IvvL~~G~vvy~G~~~el~~ 162 (1202)
+.++.++|+|+++|. ..++.+++|+|++|++|++++.|+++++.+
T Consensus 182 l~~~~g~tii~vTHd-~~~a~~~~dri~vm~~G~iv~~G~~~el~~ 226 (239)
T d1v43a3 182 LQQKLKVTTIYVTHD-QVEAMTMGDRIAVMNRGQLLQIGSPTEVYL 226 (239)
T ss_dssp HHHHHTCEEEEEESC-HHHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred HHHhcCCeEEEEeCC-HHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 887778999888774 458889999999999999999999999863
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=99.90 E-value=3.6e-25 Score=233.69 Aligned_cols=121 Identities=17% Similarity=0.227 Sum_probs=109.4
Q ss_pred hhhhhhhhhHHHHHHHHHhCCcccccccccCCcccccCccccchhhHHHHHhcCCeEeeeeCCCccccHHHHHHHHHHHH
Q 000979 36 IATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLR 115 (1202)
Q Consensus 36 ~~~~~~~~~~~v~~il~~lgL~~~~dT~VG~~~~~gLSGGQKqRvsIAraLv~~P~ILlLDEpTSGLDs~sa~~vv~~L~ 115 (1202)
....+++.+++++++++.+||++.+|..++ +|||||||||+|||||+.+|+||+|||||||||+.+..++++.++
T Consensus 110 ~~~~~~~~~~~v~~~l~~~gL~~~~~~~p~-----~LSGGqkQRvaiARaL~~~P~llllDEPt~~LD~~~~~~i~~~i~ 184 (242)
T d1oxxk2 110 MKMSKEEIRKRVEEVAKILDIHHVLNHFPR-----ELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVK 184 (242)
T ss_dssp SSCCHHHHHHHHHHHHHHTTCGGGTTSCGG-----GSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHH
T ss_pred hcCCHHHHHHHHHHHHhhcChHhhhhCChh-----hCCHHHHhHHHHHhHHhhcccceeecCCccCCCHHHHHHHHHHHH
Confidence 355667888899999999999999888875 799999999999999999999999999999999999999999999
Q ss_pred HHhHhCCCEEEEEecCCChHHHhhhcceEEecCCcEEEEcCcchHHH
Q 000979 116 QNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLE 162 (1202)
Q Consensus 116 ~~a~~~~tTiIiaihQp~~s~~~~fD~IvvL~~G~vvy~G~~~el~~ 162 (1202)
++.++.++|+|+++|. ..++.+.+|||++|++|++++.|+++++.+
T Consensus 185 ~l~~~~g~tvi~vTHd-~~~~~~~~dri~vm~~G~iv~~g~~~el~~ 230 (242)
T d1oxxk2 185 EVQSRLGVTLLVVSHD-PADIFAIADRVGVLVKGKLVQVGKPEDLYD 230 (242)
T ss_dssp HHHHHHCCEEEEEESC-HHHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred HHHhccCCEEEEEECC-HHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 9877778888887664 347889999999999999999999999864
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.90 E-value=9.1e-25 Score=229.92 Aligned_cols=120 Identities=21% Similarity=0.203 Sum_probs=108.3
Q ss_pred hhhhhhhhHHHHHHHHHhCCcccccccccCCcccccCccccchhhHHHHHhcCCeEeeeeCCCccccHHHHHHHHHHHHH
Q 000979 37 ATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQ 116 (1202)
Q Consensus 37 ~~~~~~~~~~v~~il~~lgL~~~~dT~VG~~~~~gLSGGQKqRvsIAraLv~~P~ILlLDEpTSGLDs~sa~~vv~~L~~ 116 (1202)
...+.+++++++++++.+||.+.+|..+ .+|||||||||+|||||+.+|+||+|||||||||+.++..+++.+++
T Consensus 97 ~~~~~~~~~~v~~~l~~~gl~~~~~~~~-----~~LSGG~kQRvaiAral~~~P~illlDEPts~LD~~~~~~i~~~i~~ 171 (240)
T d2onka1 97 NVERVERDRRVREMAEKLGIAHLLDRKP-----ARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRF 171 (240)
T ss_dssp TSCHHHHHHHHHHHHHTTTCTTTTTCCG-----GGSCHHHHHHHHHHHHHTTCCSSBEEESTTSSCCHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHhcCcHhhhhCCh-----hhCCHHHHHHHHHHHHHhccCCceEecCccccCCHHHHHHHHHHHHH
Confidence 3455677888999999999999888887 47999999999999999999999999999999999999999999999
Q ss_pred HhHhCCCEEEEEecCCChHHHhhhcceEEecCCcEEEEcCcchHHH
Q 000979 117 NIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLE 162 (1202)
Q Consensus 117 ~a~~~~tTiIiaihQp~~s~~~~fD~IvvL~~G~vvy~G~~~el~~ 162 (1202)
+.++.++|+|+++|.. .++.+.+|+|++|++|+++++|+++|+.+
T Consensus 172 l~~~~g~tvi~vtHd~-~~~~~~adri~vm~~G~ii~~G~~~el~~ 216 (240)
T d2onka1 172 VQREFDVPILHVTHDL-IEAAMLADEVAVMLNGRIVEKGKLKELFS 216 (240)
T ss_dssp HHHHHTCCEEEEESCH-HHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred HHHhcCCeEEEEeCCH-HHHHHhCCEEEEEECCEEEEEecHHHHhc
Confidence 8877788888776644 48899999999999999999999999974
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.90 E-value=1.1e-24 Score=234.01 Aligned_cols=107 Identities=23% Similarity=0.345 Sum_probs=96.2
Q ss_pred HhCCcccccccccCCcccccCccccchhhHHHHHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHhHhCCCEEEEEecCC
Q 000979 53 VLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQP 132 (1202)
Q Consensus 53 ~lgL~~~~dT~VG~~~~~gLSGGQKqRvsIAraLv~~P~ILlLDEpTSGLDs~sa~~vv~~L~~~a~~~~tTiIiaihQp 132 (1202)
..+|++..||.+| +.+..|||||||||+|||||+++|+||+||||||+||+.++.++++.|+++.++.++|+|+.+|
T Consensus 134 i~~l~~g~~~~i~-~~~~~LSGGqkQRvaiARal~~~p~ililDEpTs~LD~~~~~~i~~~l~~l~~~~~~Tvi~itH-- 210 (251)
T d1jj7a_ 134 ISGLPQGYDTEVD-EAGSQLSGGQRQAVALARALIRKPCVLILDDATSALDANSQLQVEQLLYESPERYSRSVLLITQ-- 210 (251)
T ss_dssp HHTSTTGGGCBCC-SSCSSSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHTCGGGGGCEEEEECS--
T ss_pred HHhccccchhhHh-ccCccCChhHceEEEEeeccccCCcEEEecCcCcccChhhHHHHHHHHHHHhhhcCCEEEEEeC--
Confidence 4588889999998 6678899999999999999999999999999999999999999999999876655667666554
Q ss_pred ChHHHhhhcceEEecCCcEEEEcCcchHHH
Q 000979 133 APETYDLFDDIILLSDGQIVYQGPRELVLE 162 (1202)
Q Consensus 133 ~~s~~~~fD~IvvL~~G~vvy~G~~~el~~ 162 (1202)
+.++++.||+|+||++|+++++|+|+|+++
T Consensus 211 ~l~~~~~aDrI~vl~~G~iv~~Gt~~eLl~ 240 (251)
T d1jj7a_ 211 HLSLVEQADHILFLEGGAIREGGTHQQLME 240 (251)
T ss_dssp CHHHHHTCSEEEEEETTEEEEEECHHHHHH
T ss_pred CHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 467889999999999999999999999986
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Probab=99.90 E-value=5.2e-24 Score=223.18 Aligned_cols=115 Identities=21% Similarity=0.185 Sum_probs=104.0
Q ss_pred hhhhHHHHHHHHHhCCcccccccccCCcccccCccccchhhHHHHHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHhHh
Q 000979 41 QEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHI 120 (1202)
Q Consensus 41 ~~~~~~v~~il~~lgL~~~~dT~VG~~~~~gLSGGQKqRvsIAraLv~~P~ILlLDEpTSGLDs~sa~~vv~~L~~~a~~ 120 (1202)
.+.+++++++++.+||++-.|..++ .|||||||||+|||||+.+|+||+|||||||||+.+..++++.++++.++
T Consensus 102 ~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSGG~~QRvaiAraL~~~P~iLllDEPts~LD~~~~~~i~~~l~~l~~~ 176 (229)
T d3d31a2 102 IKDPKRVLDTARDLKIEHLLDRNPL-----TLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKK 176 (229)
T ss_dssp CCCHHHHHHHHHHTTCTTTTTSCGG-----GSCHHHHHHHHHHHHTTSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHhcchhhHhCChh-----hCCHHHhcchhhhhhhhccCCceeecCCCcCCCHHHHHHHHHHHHHHHhc
Confidence 3445678999999999999988874 79999999999999999999999999999999999999999999998777
Q ss_pred CCCEEEEEecCCChHHHhhhcceEEecCCcEEEEcCcchHH
Q 000979 121 NSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVL 161 (1202)
Q Consensus 121 ~~tTiIiaihQp~~s~~~~fD~IvvL~~G~vvy~G~~~el~ 161 (1202)
.++|||+++|. ..++.+++|||++|.+|+++++|+++|+.
T Consensus 177 ~g~tii~vtHd-~~~~~~~~drv~vm~~G~iv~~g~~~el~ 216 (229)
T d3d31a2 177 NKLTVLHITHD-QTEARIMADRIAVVMDGKLIQVGKPEEIF 216 (229)
T ss_dssp TTCEEEEEESC-HHHHHHHCSEEEEESSSCEEEEECHHHHH
T ss_pred CCcEEEEEcCC-HHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 78888887664 44888899999999999999999999986
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Probab=99.90 E-value=1.5e-24 Score=231.10 Aligned_cols=104 Identities=29% Similarity=0.404 Sum_probs=92.0
Q ss_pred hCCcccccccccCCcccccCccccchhhHHHHHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHhHhCCCEEEEEecCCC
Q 000979 54 LGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPA 133 (1202)
Q Consensus 54 lgL~~~~dT~VG~~~~~gLSGGQKqRvsIAraLv~~P~ILlLDEpTSGLDs~sa~~vv~~L~~~a~~~~tTiIiaihQp~ 133 (1202)
..+++..||.|| +.+..|||||||||+|||||+++|+||+||||||+||+.++..|++.|+++. +++|+|+.+ |+
T Consensus 123 ~~~~~~~~t~i~-~~g~~LSGGq~QRvalARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~--~~~Tvi~it--H~ 197 (241)
T d2pmka1 123 SELREGYNTIVG-EQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKIC--KGRTVIIIA--HR 197 (241)
T ss_dssp TTSTTGGGSBCS-TTTTCCCHHHHHHHHHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHHH--TTSEEEEEC--SS
T ss_pred HhhhcchhhhcC-CCCCccCHHHHHHHhhhhhhhcccchhhhhCCccccCHHHHHHHHHHHHHHh--CCCEEEEEE--CC
Confidence 356788999998 5678899999999999999999999999999999999999999999999875 355555544 45
Q ss_pred hHHHhhhcceEEecCCcEEEEcCcchHHH
Q 000979 134 PETYDLFDDIILLSDGQIVYQGPRELVLE 162 (1202)
Q Consensus 134 ~s~~~~fD~IvvL~~G~vvy~G~~~el~~ 162 (1202)
.++++.+|+|+||++|+++++|+|+|+++
T Consensus 198 l~~~~~~D~i~vl~~G~Iv~~G~~~ell~ 226 (241)
T d2pmka1 198 LSTVKNADRIIVMEKGKIVEQGKHKELLS 226 (241)
T ss_dssp GGGGTTSSEEEEEETTEEEEEECHHHHHH
T ss_pred HHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 56789999999999999999999999985
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=99.89 E-value=2.7e-24 Score=230.76 Aligned_cols=104 Identities=27% Similarity=0.362 Sum_probs=92.0
Q ss_pred hCCcccccccccCCcccccCccccchhhHHHHHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHhHhCCCEEEEEecCCC
Q 000979 54 LGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPA 133 (1202)
Q Consensus 54 lgL~~~~dT~VG~~~~~gLSGGQKqRvsIAraLv~~P~ILlLDEpTSGLDs~sa~~vv~~L~~~a~~~~tTiIiaihQp~ 133 (1202)
..|++..||.+| +.+..|||||||||+|||||+++|+||+||||||+||+.++..+++.++++. +++|+|+.+ |+
T Consensus 138 ~~lp~gl~t~i~-~~g~~LSgGq~QRi~iARal~~~p~ililDEpts~LD~~t~~~i~~~l~~l~--~~~TvI~it--H~ 212 (255)
T d2hyda1 138 MNLPQGYDTEVG-ERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLS--KDRTTLIVA--HR 212 (255)
T ss_dssp HTSTTGGGCBCC-GGGTTSCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHT--TTSEEEEEC--SS
T ss_pred Hhccccccchhc-CCCCCcCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHh--cCCEEEEEe--CC
Confidence 356778999999 5678899999999999999999999999999999999999999999999865 345555444 56
Q ss_pred hHHHhhhcceEEecCCcEEEEcCcchHHH
Q 000979 134 PETYDLFDDIILLSDGQIVYQGPRELVLE 162 (1202)
Q Consensus 134 ~s~~~~fD~IvvL~~G~vvy~G~~~el~~ 162 (1202)
.++++.||+|++|++|++++.|+|+|+++
T Consensus 213 ~~~~~~~D~ii~l~~G~iv~~G~~~eLl~ 241 (255)
T d2hyda1 213 LSTITHADKIVVIENGHIVETGTHRELIA 241 (255)
T ss_dssp GGGTTTCSEEEEEETTEEEEEECHHHHHH
T ss_pred HHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 67889999999999999999999999985
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=99.89 E-value=2.1e-24 Score=232.29 Aligned_cols=103 Identities=26% Similarity=0.398 Sum_probs=91.1
Q ss_pred CCcccccccccCCcccccCccccchhhHHHHHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHhHhCCCEEEEEecCCCh
Q 000979 55 GLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAP 134 (1202)
Q Consensus 55 gL~~~~dT~VG~~~~~gLSGGQKqRvsIAraLv~~P~ILlLDEpTSGLDs~sa~~vv~~L~~~a~~~~tTiIiaihQp~~ 134 (1202)
.|++..||.+| +.+..|||||||||+|||||+++|+||+||||||+||+.++..+++.|+++. +++|+|+.+ |+.
T Consensus 137 ~l~~gl~t~~~-~~~~~LSGGqkQRvaiARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~--~~~Tvi~it--H~l 211 (253)
T d3b60a1 137 KMDNGLDTIIG-ENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQ--KNRTSLVIA--HRL 211 (253)
T ss_dssp HSTTGGGSBCC-TTSCSSCHHHHHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHH--TTSEEEEEC--SCG
T ss_pred hccccchhhhc-CCCCCcCHHHHHHHHHHHHHhcCCCEEEeccccccCCHHHHHHHHHHHHHhc--cCCEEEEEE--CCH
Confidence 35667899998 5678899999999999999999999999999999999999999999999875 345555544 566
Q ss_pred HHHhhhcceEEecCCcEEEEcCcchHHH
Q 000979 135 ETYDLFDDIILLSDGQIVYQGPRELVLE 162 (1202)
Q Consensus 135 s~~~~fD~IvvL~~G~vvy~G~~~el~~ 162 (1202)
++.+.||+|+||++|+++++|+|+|+++
T Consensus 212 ~~~~~~D~v~vl~~G~Iv~~G~~~eLl~ 239 (253)
T d3b60a1 212 STIEQADEIVVVEDGIIVERGTHSELLA 239 (253)
T ss_dssp GGTTTCSEEEEEETTEEEEEECHHHHHH
T ss_pred HHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 7889999999999999999999999986
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Probab=99.89 E-value=1.3e-24 Score=232.34 Aligned_cols=104 Identities=24% Similarity=0.294 Sum_probs=92.5
Q ss_pred hCCcccccccccCCcccccCccccchhhHHHHHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHhHhCCCEEEEEecCCC
Q 000979 54 LGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPA 133 (1202)
Q Consensus 54 lgL~~~~dT~VG~~~~~gLSGGQKqRvsIAraLv~~P~ILlLDEpTSGLDs~sa~~vv~~L~~~a~~~~tTiIiaihQp~ 133 (1202)
..+++..||.|| +.+..|||||||||+|||||+++|+||+|||||||||+.++..+++.|+++. +++|+|+.. |+
T Consensus 123 ~~~~~~~~~~i~-~~g~~LSGGqkQRv~iARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~--~~~Tvi~it--H~ 197 (242)
T d1mv5a_ 123 ENMPDQLNTEVG-ERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLM--KGRTTLVIA--HR 197 (242)
T ss_dssp TSSTTGGGCEES-TTSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHHHHH--TTSEEEEEC--CS
T ss_pred ccCccccccccc-CCCCCCCHHHHHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHc--CCCEEEEEE--CC
Confidence 456778999999 5678899999999999999999999999999999999999999999999875 355655544 56
Q ss_pred hHHHhhhcceEEecCCcEEEEcCcchHHH
Q 000979 134 PETYDLFDDIILLSDGQIVYQGPRELVLE 162 (1202)
Q Consensus 134 ~s~~~~fD~IvvL~~G~vvy~G~~~el~~ 162 (1202)
.++.+.||+|+||++|+++++|+|+|+++
T Consensus 198 l~~~~~~D~i~vl~~G~iv~~G~~~eLl~ 226 (242)
T d1mv5a_ 198 LSTIVDADKIYFIEKGQITGSGKHNELVA 226 (242)
T ss_dssp HHHHHHCSEEEEEETTEECCCSCHHHHHH
T ss_pred HHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 67889999999999999999999999985
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.89 E-value=1.3e-23 Score=220.91 Aligned_cols=112 Identities=23% Similarity=0.277 Sum_probs=99.5
Q ss_pred hhhhhhHHHHHHHHHhCCcc-cccccccCCcccccCccccchhhHHHHHhcCCeEeeeeCCCccccHHHHHHHHHHHHHH
Q 000979 39 EGQEANVITDYYLKVLGLDV-CADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQN 117 (1202)
Q Consensus 39 ~~~~~~~~v~~il~~lgL~~-~~dT~VG~~~~~gLSGGQKqRvsIAraLv~~P~ILlLDEpTSGLDs~sa~~vv~~L~~~ 117 (1202)
..+++.+.+.++++.+||++ .+|..+ .+|||||||||+|||||+.+|+||+|||||||||+.++.+|++.|+++
T Consensus 117 ~~~~~~~~~~~~l~~~~L~~~~~~~~p-----~~LSGGqkQRvaIAraL~~~P~lLllDEPTs~LD~~~~~~i~~~l~~l 191 (230)
T d1l2ta_ 117 SGEERRKRALECLKMAELEERFANHKP-----NQLSGGQQQRVAIARALANNPPIILADQPTGALDSKTGEKIMQLLKKL 191 (230)
T ss_dssp CHHHHHHHHHHHHHHTTCCGGGTTCCG-----GGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhhchhhhhhcCCh-----hhCCHHHHHHHHHHhhhhcCCCEEEecCCccccCHHHHHHHHHHHHHH
Confidence 44667777888999999986 577776 479999999999999999999999999999999999999999999998
Q ss_pred hHhCCCEEEEEecCCChHHHhhhcceEEecCCcEEEEcCc
Q 000979 118 IHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPR 157 (1202)
Q Consensus 118 a~~~~tTiIiaihQp~~s~~~~fD~IvvL~~G~vvy~G~~ 157 (1202)
.++.++|+|+++|.+ +..+.+|||++|.+|++++.|+.
T Consensus 192 ~~~~g~tii~vTHd~--~~a~~~drv~~m~~G~Iv~~g~~ 229 (230)
T d1l2ta_ 192 NEEDGKTVVVVTHDI--NVARFGERIIYLKDGEVEREEKL 229 (230)
T ss_dssp HHTTCCEEEEECSCH--HHHTTSSEEEEEETTEEEEEEEC
T ss_pred HHhhCCEEEEECCCH--HHHHhCCEEEEEECCEEEEeccC
Confidence 877789998888754 45689999999999999999974
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Probab=99.88 E-value=1e-23 Score=224.32 Aligned_cols=123 Identities=22% Similarity=0.241 Sum_probs=110.3
Q ss_pred HhhhhhhhhhHHHHHHHHHhCCcccccccccCCcccccCccccchhhHHHHHhcCCeEeeeeCCCccccHHHHHHHHHHH
Q 000979 35 AIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCL 114 (1202)
Q Consensus 35 ~~~~~~~~~~~~v~~il~~lgL~~~~dT~VG~~~~~gLSGGQKqRvsIAraLv~~P~ILlLDEpTSGLDs~sa~~vv~~L 114 (1202)
.....+++.++.++++++.++|.+-.|..++ .||||||||++|||||+.+|+||+|||||+|||+.+..++++.+
T Consensus 102 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~lSgG~~qrv~iA~al~~~p~illLDEPt~gLD~~~~~~i~~~i 176 (238)
T d1vpla_ 102 FYASSSSEIEEMVERATEIAGLGEKIKDRVS-----TYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKIL 176 (238)
T ss_dssp HHCCCHHHHHHHHHHHHHHHCCGGGGGSBGG-----GCCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHH
T ss_pred hcCCCHHHHHHHHHHHHHhCCCHHHHhhhhh-----hCCHHHHHHHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHH
Confidence 3455667778889999999999999999885 79999999999999999999999999999999999999999999
Q ss_pred HHHhHhCCCEEEEEecCCChHHHhhhcceEEecCCcEEEEcCcchHHHHH
Q 000979 115 RQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLEFF 164 (1202)
Q Consensus 115 ~~~a~~~~tTiIiaihQp~~s~~~~fD~IvvL~~G~vvy~G~~~el~~~F 164 (1202)
++++. .|+||+++.| ...++...+|||+||++|++++.|+++++.+.|
T Consensus 177 ~~~~~-~g~tii~~tH-~l~~~~~~~drv~vl~~G~iv~~g~~~el~~~~ 224 (238)
T d1vpla_ 177 KQASQ-EGLTILVSSH-NMLEVEFLCDRIALIHNGTIVETGTVEELKERY 224 (238)
T ss_dssp HHHHH-TTCEEEEEEC-CHHHHTTTCSEEEEEETTEEEEEEEHHHHHHHT
T ss_pred HHHHh-cCCEEEEEeC-CHHHHHHhCCEEEEEECCEEEEEcCHHHHHhcc
Confidence 99765 6889998876 445888899999999999999999999998744
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.86 E-value=4.4e-23 Score=225.34 Aligned_cols=107 Identities=20% Similarity=0.214 Sum_probs=91.8
Q ss_pred HHhCCcccccccccCCcccccCccccchhhHHHHHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHhHhCCCEEEEEecC
Q 000979 52 KVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQ 131 (1202)
Q Consensus 52 ~~lgL~~~~dT~VG~~~~~gLSGGQKqRvsIAraLv~~P~ILlLDEpTSGLDs~sa~~vv~~L~~~a~~~~tTiIiaihQ 131 (1202)
....|.+..||.+| +.+..|||||||||+|||||+++|+||+|||||||||+.++.++++.+..... .++|+|+.+
T Consensus 140 ~i~~l~~~~~~~~~-~~~~~LSgGqkQRv~lARaL~~~p~illLDEPts~LD~~~~~~i~~~~~~~~~-~~~tvi~it-- 215 (281)
T d1r0wa_ 140 DITKFAEQDNTVLG-EGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLM-ANKTRILVT-- 215 (281)
T ss_dssp HHTTSTTGGGCEEC-TTCTTSCHHHHHHHHHHHHHHSCCSEEEEESCCCSSCHHHHHHHHHHCCCCCT-TTSEEEEEC--
T ss_pred HHHhchhhhhhhhh-hhccCCCHHHHHHHHHHHHHHhCccchhhcCccccCCHHHHHHHHHHHHHHhh-CCCEEEEEe--
Confidence 45678889999998 66788999999999999999999999999999999999999999987544333 455665554
Q ss_pred CChHHHhhhcceEEecCCcEEEEcCcchHHH
Q 000979 132 PAPETYDLFDDIILLSDGQIVYQGPRELVLE 162 (1202)
Q Consensus 132 p~~s~~~~fD~IvvL~~G~vvy~G~~~el~~ 162 (1202)
|+.+..+.||+|++|++|+++++|||+|++.
T Consensus 216 H~~~~l~~aDrI~vl~~G~i~~~Gt~~eL~~ 246 (281)
T d1r0wa_ 216 SKMEHLRKADKILILHQGSSYFYGTFSELQS 246 (281)
T ss_dssp SCHHHHHTCSEEEEEETTEEEEEECHHHHHH
T ss_pred chHHHHHhCCEEEEEECCEEEEECCHHHHhc
Confidence 4567889999999999999999999999975
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Probab=99.86 E-value=1.2e-22 Score=216.76 Aligned_cols=114 Identities=19% Similarity=0.276 Sum_probs=101.2
Q ss_pred hhhhHHHHHHHHHh-CCcccccccccCCcccccCccccchhhHHHHHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHhH
Q 000979 41 QEANVITDYYLKVL-GLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIH 119 (1202)
Q Consensus 41 ~~~~~~v~~il~~l-gL~~~~dT~VG~~~~~gLSGGQKqRvsIAraLv~~P~ILlLDEpTSGLDs~sa~~vv~~L~~~a~ 119 (1202)
++.++.++.+++.+ +|.+.+|..++ .|||||||||+|||||+.+|+||+|||||+|||+.+..++++.++++++
T Consensus 113 ~~~~~~~~~~~~~~~~l~~~~~~~~~-----~LSGG~~Qrv~iAraL~~~P~lLllDEPt~gLD~~~~~~i~~~i~~l~~ 187 (240)
T d1ji0a_ 113 EGIKRDLEWIFSLFPRLKERLKQLGG-----TLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQ 187 (240)
T ss_dssp SHHHHHHHHHHHHCHHHHTTTTSBSS-----SSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhChHHHHhCchh-----hCCHHHHHHHHHHHHHHhCCCEeeecCCCcCCCHHHHHHHHHHHHHHHh
Confidence 34455577788777 79999998886 6999999999999999999999999999999999999999999999865
Q ss_pred hCCCEEEEEecCCChHHHhhhcceEEecCCcEEEEcCcchHH
Q 000979 120 INSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVL 161 (1202)
Q Consensus 120 ~~~tTiIiaihQp~~s~~~~fD~IvvL~~G~vvy~G~~~el~ 161 (1202)
.|+||+++.| .-.++.+.+|||+||++|++++.|+++|+.
T Consensus 188 -~g~til~~tH-~l~~~~~~~drv~vl~~G~iv~~g~~~el~ 227 (240)
T d1ji0a_ 188 -EGTTILLVEQ-NALGALKVAHYGYVLETGQIVLEGKASELL 227 (240)
T ss_dssp -TTCCEEEEES-CHHHHHHHCSEEEEEETTEEEEEEEHHHHH
T ss_pred -CCCEEEEEeC-CHHHHHHhCCEEEEEECCEEEEEcCHHHHh
Confidence 5788887755 556889999999999999999999999986
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Probab=99.86 E-value=2.1e-22 Score=216.58 Aligned_cols=120 Identities=22% Similarity=0.287 Sum_probs=103.9
Q ss_pred hhhhhhhhhHHHHHHHHHhCCccc-ccccccCCcccccCccccchhhHHHHHhcCCeEeeeeCCCccccHHHHHHHHHHH
Q 000979 36 IATEGQEANVITDYYLKVLGLDVC-ADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCL 114 (1202)
Q Consensus 36 ~~~~~~~~~~~v~~il~~lgL~~~-~dT~VG~~~~~gLSGGQKqRvsIAraLv~~P~ILlLDEpTSGLDs~sa~~vv~~L 114 (1202)
.....++.+++++++++.+||.+- .|... .+|||||||||+|||||+.+|+||+|||||||||+.+..++++.+
T Consensus 118 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~p-----~~LSGG~~QRv~iAraL~~~P~llilDEPT~gLD~~~~~~i~~ll 192 (258)
T d1b0ua_ 118 LGLSKHDARERALKYLAKVGIDERAQGKYP-----VHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIM 192 (258)
T ss_dssp TCCCHHHHHHHHHHHHHHTTCCHHHHTSCG-----GGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHcCCchhhhccCc-----ccccHHHHHHHHHHHHHhcCCCEEEeccccccCCHHHHHHHHHhh
Confidence 345557778889999999999774 45555 479999999999999999999999999999999999999999999
Q ss_pred HHHhHhCCCEEEEEecCCChHHHhhhcceEEecCCcEEEEcCcchHHH
Q 000979 115 RQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLE 162 (1202)
Q Consensus 115 ~~~a~~~~tTiIiaihQp~~s~~~~fD~IvvL~~G~vvy~G~~~el~~ 162 (1202)
+++.+ .|+||++.+| --.++.+++|||+||.+|++++.|+++|+.+
T Consensus 193 ~~l~~-~g~til~vtH-dl~~~~~~adri~vm~~G~iv~~g~~~ev~~ 238 (258)
T d1b0ua_ 193 QQLAE-EGKTMVVVTH-EMGFARHVSSHVIFLHQGKIEEEGDPEQVFG 238 (258)
T ss_dssp HHHHH-TTCCEEEECS-CHHHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred hhhcc-cCCceEEEeC-CHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 99875 5777776644 5557888999999999999999999999864
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.85 E-value=4.5e-22 Score=214.46 Aligned_cols=115 Identities=23% Similarity=0.258 Sum_probs=103.2
Q ss_pred hhhhHHHHHHHHHhCCcccccccccCCcccccCccccchhhHHHHHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHhHh
Q 000979 41 QEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHI 120 (1202)
Q Consensus 41 ~~~~~~v~~il~~lgL~~~~dT~VG~~~~~gLSGGQKqRvsIAraLv~~P~ILlLDEpTSGLDs~sa~~vv~~L~~~a~~ 120 (1202)
++..+.++.+++.+|+.+.+|..++ .|||||||||+|||||+.+|++|+|||||+|||+.+..++++.++++. +
T Consensus 125 ~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgG~~Qrv~iAraL~~~P~llilDEPt~gLD~~~~~~i~~~i~~l~-~ 198 (254)
T d1g6ha_ 125 EEMVEKAFKILEFLKLSHLYDRKAG-----ELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELK-A 198 (254)
T ss_dssp HHHHHHHHHHHHHTTCGGGTTSBGG-----GSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHH-H
T ss_pred HHHHHHHHHHHHhcCcchhccCchh-----hCCcHHHHHHHHHHHHHhCcCchhhcCCcccCCHHHHHHHHHHHHHHH-H
Confidence 3445668889999999999999886 699999999999999999999999999999999999999999999975 4
Q ss_pred CCCEEEEEecCCChHHHhhhcceEEecCCcEEEEcCcchHHH
Q 000979 121 NSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLE 162 (1202)
Q Consensus 121 ~~tTiIiaihQp~~s~~~~fD~IvvL~~G~vvy~G~~~el~~ 162 (1202)
.|+||+++.| .-.++.+.+|||+||++|++++.|+++|+.+
T Consensus 199 ~g~til~vsH-dl~~~~~~~Drv~vm~~G~iv~~g~~~e~~~ 239 (254)
T d1g6ha_ 199 KGITFLIIEH-RLDIVLNYIDHLYVMFNGQIIAEGRGEEEIK 239 (254)
T ss_dssp TTCEEEEECS-CCSTTGGGCSEEEEEETTEEEEEEESHHHHH
T ss_pred CCCEEEEEeC-cHHHHHHhCCEEEEEeCCEEEEEecHHHHhh
Confidence 6888888755 5558899999999999999999999998764
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Probab=99.82 E-value=2e-21 Score=206.54 Aligned_cols=118 Identities=21% Similarity=0.226 Sum_probs=103.8
Q ss_pred hhhhhhhhHHHHHHHHHhCCcccccccccCCcccccCccccchhhHHHHHhc-------CCeEeeeeCCCccccHHHHHH
Q 000979 37 ATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVG-------PALALFMDEISTGLDSSTTFQ 109 (1202)
Q Consensus 37 ~~~~~~~~~~v~~il~~lgL~~~~dT~VG~~~~~gLSGGQKqRvsIAraLv~-------~P~ILlLDEpTSGLDs~sa~~ 109 (1202)
....+.+++.++++++.++|.+..|..++ .|||||||||+|||+|+. +|+||+|||||||||..++..
T Consensus 96 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-----~LSgG~~Qrv~iA~al~~~~p~~~p~p~llllDEPt~gLD~~~~~~ 170 (231)
T d1l7vc_ 96 HQHDKTRTELLNDVAGALALDDKLGRSTN-----QLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSA 170 (231)
T ss_dssp HCSCTTCHHHHHHHHHHTTCTTTTTSBGG-----GCCHHHHHHHHHHHHHHHHCTTTCTTCCEEEESSCSTTCCHHHHHH
T ss_pred ccchhhHHHHHHHHHHhcCCHhHhCcChh-----hcCHHHHHHHHHHHHHHhhCcccCCCCCEEEEcCCCCCCCHHHHHH
Confidence 33445667778999999999998888764 799999999999999996 679999999999999999999
Q ss_pred HHHHHHHHhHhCCCEEEEEecCCChHHHhhhcceEEecCCcEEEEcCcchHH
Q 000979 110 IVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVL 161 (1202)
Q Consensus 110 vv~~L~~~a~~~~tTiIiaihQp~~s~~~~fD~IvvL~~G~vvy~G~~~el~ 161 (1202)
+.+.++++.. .|+||+++.|.. .++.+.+|+|++|++|++++.|+++|++
T Consensus 171 i~~~i~~l~~-~g~tii~vtHdl-~~~~~~~dri~vl~~G~iv~~G~~~ev~ 220 (231)
T d1l7vc_ 171 LDKILSALCQ-QGLAIVMSSHDL-NHTLRHAHRAWLLKGGKMLASGRREEVL 220 (231)
T ss_dssp HHHHHHHHHH-TTCEEEECCCCH-HHHHHHCSBCCBEETTEECCCSBHHHHS
T ss_pred HHHHHHHHHh-CCCEEEEEeCCH-HHHHHHCCEEEEEECCEEEEECCHHHHh
Confidence 9999999864 688988887754 4799999999999999999999998885
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Probab=99.57 E-value=6.2e-16 Score=160.10 Aligned_cols=94 Identities=14% Similarity=0.127 Sum_probs=75.8
Q ss_pred hHHHHHHHHHhCCcccccccccCCcccccCccccchhhHHHHHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHhHhCCC
Q 000979 44 NVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSG 123 (1202)
Q Consensus 44 ~~~v~~il~~lgL~~~~dT~VG~~~~~gLSGGQKqRvsIAraLv~~P~ILlLDEpTSGLDs~sa~~vv~~L~~~a~~~~t 123 (1202)
+..+.+.++.+++.+. +..+ ..||||||||++|||||+.+|+|++|||||+|||..++..+++.+++.+++ ++
T Consensus 104 ~~~~~~~l~~~~~~~~-~~~~-----~~LSgG~~qrv~ia~al~~~~~llllDEPt~gLD~~~~~~i~~~l~~~~~~-~~ 176 (200)
T d1sgwa_ 104 KNEIMDALESVEVLDL-KKKL-----GELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKE-KG 176 (200)
T ss_dssp HHHHHHHHHHTTCCCT-TSBG-----GGSCHHHHHHHHHHHHTTSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHH-HS
T ss_pred HHHHHHHHHHcCCccc-cccc-----CcCCCcHHHHHHHHHHHhcCCCEEEEcCcccccCHHHHHHHHHHHHHHHhC-CC
Confidence 3445667888887663 3344 479999999999999999999999999999999999999999999998764 45
Q ss_pred EEEEEecCCChHHHhhhcceEEecC
Q 000979 124 TAVISLLQPAPETYDLFDDIILLSD 148 (1202)
Q Consensus 124 TiIiaihQp~~s~~~~fD~IvvL~~ 148 (1202)
++|++.||.- ..+|.+.+|++
T Consensus 177 ~~ii~~~~~l----~~~D~~~~l~~ 197 (200)
T d1sgwa_ 177 IVIISSREEL----SYCDVNENLHK 197 (200)
T ss_dssp EEEEEESSCC----TTSSEEEEGGG
T ss_pred EEEEEEechh----hhcchhhheee
Confidence 6666655432 47899999864
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Probab=99.38 E-value=2.3e-14 Score=146.27 Aligned_cols=156 Identities=15% Similarity=0.043 Sum_probs=95.5
Q ss_pred EEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCCcccccceEEEeec--CCC--CCCCCCHHHHHHHHHHccCCC
Q 000979 645 TALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQ--NDI--HSPFVTIYESLLFSAWLRLSP 720 (1202)
Q Consensus 645 ~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q--~~~--~~~~lTv~e~l~~~~~~~~~~ 720 (1202)
++|+||||||||||+++|+|...+ ..|.+...+.+......+ .++..+ .+. .....+..+ ..
T Consensus 3 i~I~G~~G~GKSTLl~~i~~~l~~--~~g~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~----------~~ 68 (178)
T d1ye8a1 3 IIITGEPGVGKTTLVKKIVERLGK--RAIGFWTEEVRDPETKKR--TGFRIITTEGKKKIFSSKFFTS----------KK 68 (178)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHGG--GEEEEEEEEEC------C--CEEEEEETTCCEEEEEETTCCC----------SS
T ss_pred EEEECCCCcHHHHHHHHHHhcCCC--CcceEEECCcchHHHHHh--hhhhhhhhhHHHHHHhhhhhhh----------hh
Confidence 799999999999999999997653 367777776543322111 111111 000 000000000 00
Q ss_pred CCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 000979 721 EVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN 800 (1202)
Q Consensus 721 ~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~ 800 (1202)
... ..+. +. ....+|+|+++|.++++++..+|++|++|||+... .....+.+.+.+
T Consensus 69 ~~~-------------~~~~----~~-----~~~~~~~~~~~~~~l~~~~~~~~~vlllDE~~~~~--~~~~~~~~~l~~ 124 (178)
T d1ye8a1 69 LVG-------------SYGV----NV-----QYFEELAIPILERAYREAKKDRRKVIIIDEIGKME--LFSKKFRDLVRQ 124 (178)
T ss_dssp EET-------------TEEE----CH-----HHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTG--GGCHHHHHHHHH
T ss_pred hhh-------------hhhc----Cc-----chhhhhhhhhHHHHHHHHHhcCCCceeecCCCccc--hhhHHHHHHHHH
Confidence 000 0000 00 01247999999999999999999999999985443 334455666666
Q ss_pred HHh-CCCEEEEEecCCCHHHHHhcceEEEEecCCEEEEEcCC
Q 000979 801 TVD-TGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPL 841 (1202)
Q Consensus 801 ~~~-~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G~~ 841 (1202)
+.+ .+.++|+++|+.+ ....+|++..+. +|+++.-++.
T Consensus 125 ~l~~~~~~il~~~h~~~--~~~~~~~i~~~~-~~~i~~v~~~ 163 (178)
T d1ye8a1 125 IMHDPNVNVVATIPIRD--VHPLVKEIRRLP-GAVLIELTPE 163 (178)
T ss_dssp HHTCTTSEEEEECCSSC--CSHHHHHHHTCT-TCEEEECCTT
T ss_pred HhccCCCEEEEEEccHH--HHHhhceEEEEe-CCEEEEECCc
Confidence 544 4889999999865 457789988886 5788776553
|
| >d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Thermotoga maritima [TaxId: 2336]
Probab=98.84 E-value=4e-08 Score=108.42 Aligned_cols=75 Identities=21% Similarity=0.248 Sum_probs=63.3
Q ss_pred CCCCCHHHHHHHHHHHHH----hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEE
Q 000979 753 VSGLSTEQRKRLTIAVEL----VANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFL 828 (1202)
Q Consensus 753 ~~~LSgGqrqRv~ia~aL----~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~ 828 (1202)
...+|+|||+...++..+ ..+|+++++|||-++|||.....+.+.|++..+ +.-||+|||.|. +.+.+|++..
T Consensus 217 ~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~iDEpe~~Lhp~~~~~l~~~l~~~~~-~~QviitTHsp~--~~~~~d~~~~ 293 (308)
T d1e69a_ 217 LSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENSK-HTQFIVITHNKI--VMEAADLLHG 293 (308)
T ss_dssp GGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHTT-TSEEEEECCCTT--GGGGCSEEEE
T ss_pred hhhhhHHHhhHHHHHhhhhhhhhccCchhhhhhccccCCHHHHHHHHHHHHHhcc-CCEEEEEECCHH--HHHhcccEEE
Confidence 346999999998887754 346789999999999999999999999998754 678999999985 6789999876
Q ss_pred Ee
Q 000979 829 MK 830 (1202)
Q Consensus 829 l~ 830 (1202)
+.
T Consensus 294 v~ 295 (308)
T d1e69a_ 294 VT 295 (308)
T ss_dssp EE
T ss_pred EE
Confidence 53
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.44 E-value=1.3e-07 Score=109.21 Aligned_cols=75 Identities=16% Similarity=0.199 Sum_probs=63.5
Q ss_pred CCCCHHHHHHHHHHHHH----hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEE
Q 000979 754 SGLSTEQRKRLTIAVEL----VANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLM 829 (1202)
Q Consensus 754 ~~LSgGqrqRv~ia~aL----~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l 829 (1202)
..||||||.++++|..+ ..++++++||||+++||+..+..+.+.|++++..+.-+|+|||+| .+.+.+|+.+.+
T Consensus 331 ~~lSgGEk~~~~lal~lal~~~~~~pililDE~d~~Ld~~~~~~~~~~l~~~~~~~~Q~I~iTH~~--~~~~~ad~~~~V 408 (427)
T d1w1wa_ 331 EYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKN--TMFEKSDALVGV 408 (427)
T ss_dssp GGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCH--HHHTTCSEEEEE
T ss_pred hhhccchHHHHHHHHHHHHhcCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhCCCCEEEEEeCCH--HHHHhcccEEEE
Confidence 46899999998877544 356779999999999999999999999998865566799999997 588999998766
Q ss_pred e
Q 000979 830 K 830 (1202)
Q Consensus 830 ~ 830 (1202)
.
T Consensus 409 ~ 409 (427)
T d1w1wa_ 409 Y 409 (427)
T ss_dssp E
T ss_pred E
Confidence 3
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.04 E-value=1.2e-06 Score=100.64 Aligned_cols=74 Identities=16% Similarity=0.261 Sum_probs=58.3
Q ss_pred cccCccccchhhHHHH----HhcCCeEeeeeCCCccccHHHHHHHHHHHHHHhHhCCCEEEEEecCCChHHHhhhcceEE
Q 000979 70 RGISGGQKKRVTTGEM----MVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIIL 145 (1202)
Q Consensus 70 ~gLSGGQKqRvsIAra----Lv~~P~ILlLDEpTSGLDs~sa~~vv~~L~~~a~~~~tTiIiaihQp~~s~~~~fD~Ivv 145 (1202)
..+|||||.++++|-. .+.+++|++||||+++||+.....+.+.|++.+. .++-+|+++ |.+.+...+|+++.
T Consensus 331 ~~lSgGEk~~~~lal~lal~~~~~~pililDE~d~~Ld~~~~~~~~~~l~~~~~-~~~Q~I~iT--H~~~~~~~ad~~~~ 407 (427)
T d1w1wa_ 331 EYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRN-PDLQFIVIS--LKNTMFEKSDALVG 407 (427)
T ss_dssp GGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCB-TTBEEEEEC--SCHHHHTTCSEEEE
T ss_pred hhhccchHHHHHHHHHHHHhcCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhC-CCCEEEEEe--CCHHHHHhcccEEE
Confidence 6689999999888732 2467789999999999999999999999988754 344344444 55569999999875
Q ss_pred e
Q 000979 146 L 146 (1202)
Q Consensus 146 L 146 (1202)
.
T Consensus 408 V 408 (427)
T d1w1wa_ 408 V 408 (427)
T ss_dssp E
T ss_pred E
Confidence 4
|
| >d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=97.66 E-value=0.00022 Score=73.23 Aligned_cols=62 Identities=8% Similarity=0.158 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHH-HHHHHHhCCCEEEEEecCCCHHHHHh
Q 000979 759 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR-TVRNTVDTGRTVVCTIHQPSIDIFEA 822 (1202)
Q Consensus 759 GqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~-~l~~~~~~g~tvi~~~H~~~~~~~~~ 822 (1202)
.|-+|+.-....+.+..++++||+.+|=|+.....+.. .++.+.+.+..++++||.. ++.++
T Consensus 100 ~el~~~~~il~~~~~~sLvliDE~~~gT~~~eg~ala~aile~L~~~~~~~i~tTH~~--eL~~l 162 (224)
T d1ewqa2 100 VEMEEVALILKEATENSLVLLDEVGRGTSSLDGVAIATAVAEALHERRAYTLFATHYF--ELTAL 162 (224)
T ss_dssp HHHHHHHHHHHHCCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEECCCH--HHHTC
T ss_pred HhHHHHHHHhccCCCCcEEeecccccCcchhhhcchHHHHHHHHhhcCcceEEeeech--hhhhh
Confidence 34445444444456778999999999999988776654 4455666788999999985 45443
|
| >d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=97.51 E-value=0.00017 Score=74.75 Aligned_cols=58 Identities=12% Similarity=0.099 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHH-HHHHHhC-CCEEEEEecCCC
Q 000979 759 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT-VRNTVDT-GRTVVCTIHQPS 816 (1202)
Q Consensus 759 GqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~-l~~~~~~-g~tvi~~~H~~~ 816 (1202)
.|-+|++=...-+.+..++++||+.+|=|+.....+... ++.+..+ +..++++||...
T Consensus 106 ~E~~~~~~il~~~~~~sLvliDE~~~gT~~~eg~~l~~a~l~~l~~~~~~~~i~tTH~~~ 165 (234)
T d1wb9a2 106 VEMTETANILHNATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFE 165 (234)
T ss_dssp HHHHHHHHHHHHCCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCGG
T ss_pred HHHHHHHHHHHhcccccEEeecccccCCChhhhhHHHHHhhhhhhccccceEEEecchHH
Confidence 344444433344556679999999999999988877654 6667554 568899999754
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Probab=97.41 E-value=1.9e-05 Score=78.53 Aligned_cols=83 Identities=14% Similarity=0.039 Sum_probs=65.6
Q ss_pred cccCccccchhhHHHHHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHhHhCCCEEEEEecCCChHHHhhhcceEEecCC
Q 000979 70 RGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDG 149 (1202)
Q Consensus 70 ~gLSGGQKqRvsIAraLv~~P~ILlLDEpTSGLDs~sa~~vv~~L~~~a~~~~tTiIiaihQp~~s~~~~fD~IvvL~~G 149 (1202)
..+|||+++|.++++++..+|++|++|||+...+. ....++.+.+..+..++|++++.|+. +.....|+|..+.+|
T Consensus 80 ~~~~~~~~~~~~l~~~~~~~~~vlllDE~~~~~~~--~~~~~~~l~~~l~~~~~~il~~~h~~--~~~~~~~~i~~~~~~ 155 (178)
T d1ye8a1 80 FEELAIPILERAYREAKKDRRKVIIIDEIGKMELF--SKKFRDLVRQIMHDPNVNVVATIPIR--DVHPLVKEIRRLPGA 155 (178)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGG--CHHHHHHHHHHHTCTTSEEEEECCSS--CCSHHHHHHHTCTTC
T ss_pred hhhhhhhhHHHHHHHHHhcCCCceeecCCCccchh--hHHHHHHHHHHhccCCCEEEEEEccH--HHHHhhceEEEEeCC
Confidence 45799999999999999999999999999765443 23566677766655677888776654 456788999999999
Q ss_pred cEEEEcC
Q 000979 150 QIVYQGP 156 (1202)
Q Consensus 150 ~vvy~G~ 156 (1202)
++++-+.
T Consensus 156 ~i~~v~~ 162 (178)
T d1ye8a1 156 VLIELTP 162 (178)
T ss_dssp EEEECCT
T ss_pred EEEEECC
Confidence 9988654
|
| >d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Gene 4 protein (g4p, DNA primase), helicase domain species: Bacteriophage T7 [TaxId: 10760]
Probab=96.98 E-value=0.00057 Score=72.82 Aligned_cols=32 Identities=28% Similarity=0.329 Sum_probs=27.5
Q ss_pred eecceEEEeCCeEEEEEcCCCCCHHHHHHHHh
Q 000979 632 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLA 663 (1202)
Q Consensus 632 L~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~ 663 (1202)
|+++..-+.+|+++.|.|++|+||||++.-++
T Consensus 25 lD~~~~G~~~G~l~vi~G~~G~GKT~~~~~la 56 (277)
T d1cr2a_ 25 INDKTLGARGGEVIMVTSGSGMGKSTFVRQQA 56 (277)
T ss_dssp HHHHHCSBCTTCEEEEECSTTSSHHHHHHHHH
T ss_pred HHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHH
Confidence 56665568999999999999999999987776
|
| >d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Thermotoga maritima [TaxId: 2336]
Probab=96.76 E-value=0.00059 Score=73.84 Aligned_cols=77 Identities=18% Similarity=0.239 Sum_probs=62.3
Q ss_pred ccccCccccchhhHHHH----HhcCCeEeeeeCCCccccHHHHHHHHHHHHHHhHhCCCEEEEEecCCChHHHhhhcceE
Q 000979 69 IRGISGGQKKRVTTGEM----MVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDII 144 (1202)
Q Consensus 69 ~~gLSGGQKqRvsIAra----Lv~~P~ILlLDEpTSGLDs~sa~~vv~~L~~~a~~~~tTiIiaihQp~~s~~~~fD~Iv 144 (1202)
...+|+|||+.+.++.. ...+|+++++|||-++||+.....+.+.|++.+ .++-+|+|+| +++++..+|+++
T Consensus 217 ~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~iDEpe~~Lhp~~~~~l~~~l~~~~--~~~QviitTH--sp~~~~~~d~~~ 292 (308)
T d1e69a_ 217 LSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENS--KHTQFIVITH--NKIVMEAADLLH 292 (308)
T ss_dssp GGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHT--TTSEEEEECC--CTTGGGGCSEEE
T ss_pred hhhhhHHHhhHHHHHhhhhhhhhccCchhhhhhccccCCHHHHHHHHHHHHHhc--cCCEEEEEEC--CHHHHHhcccEE
Confidence 45799999999887743 446788999999999999999999999999875 3567777665 557889999996
Q ss_pred E--ecCC
Q 000979 145 L--LSDG 149 (1202)
Q Consensus 145 v--L~~G 149 (1202)
. +.+|
T Consensus 293 ~v~~~~g 299 (308)
T d1e69a_ 293 GVTMVNG 299 (308)
T ss_dssp EEEESSS
T ss_pred EEEEeCC
Confidence 6 5666
|
| >d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=96.45 E-value=0.00062 Score=69.12 Aligned_cols=26 Identities=27% Similarity=0.620 Sum_probs=23.6
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCC
Q 000979 641 PGVLTALMGVSGAGKTTLMDVLAGRK 666 (1202)
Q Consensus 641 ~Ge~~al~G~sGaGKSTLl~~l~g~~ 666 (1202)
+|+.++++|+||+|||||+|.|.|..
T Consensus 94 ~~kt~~~~G~SGVGKSTLiN~L~~~~ 119 (225)
T d1u0la2 94 KGKISTMAGLSGVGKSSLLNAINPGL 119 (225)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHSTTC
T ss_pred cCCeEEEECCCCCCHHHHHHhhcchh
Confidence 47899999999999999999998853
|
| >d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.33 E-value=0.00078 Score=66.80 Aligned_cols=25 Identities=36% Similarity=0.518 Sum_probs=22.7
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCCC
Q 000979 642 GVLTALMGVSGAGKTTLMDVLAGRK 666 (1202)
Q Consensus 642 Ge~~al~G~sGaGKSTLl~~l~g~~ 666 (1202)
|.++.|+||||||||||.+.|....
T Consensus 2 G~iivl~GpsG~GK~tl~~~L~~~~ 26 (182)
T d1znwa1 2 GRVVVLSGPSAVGKSTVVRCLRERI 26 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CeEEEEECCCCCCHHHHHHHHHhhC
Confidence 8899999999999999999997643
|
| >d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein Atu3015 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=96.16 E-value=0.0012 Score=64.65 Aligned_cols=26 Identities=35% Similarity=0.528 Sum_probs=23.8
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCC
Q 000979 641 PGVLTALMGVSGAGKTTLMDVLAGRK 666 (1202)
Q Consensus 641 ~Ge~~al~G~sGaGKSTLl~~l~g~~ 666 (1202)
.|+++.|.||+||||||+.+.|+.+.
T Consensus 3 ~g~iI~l~G~~GsGKSTia~~La~~l 28 (176)
T d1zp6a1 3 GGNILLLSGHPGSGKSTIAEALANLP 28 (176)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999999998764
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Probab=96.14 E-value=0.0011 Score=64.43 Aligned_cols=21 Identities=48% Similarity=0.567 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhC
Q 000979 644 LTALMGVSGAGKTTLMDVLAG 664 (1202)
Q Consensus 644 ~~al~G~sGaGKSTLl~~l~g 664 (1202)
+++|+|++|||||||++.|..
T Consensus 4 vi~itG~~GSGKTTL~~~L~~ 24 (170)
T d1np6a_ 4 LLAFAAWSGTGKTTLLKKLIP 24 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 789999999999999999985
|
| >d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cell division protein MukB species: Escherichia coli [TaxId: 562]
Probab=96.12 E-value=0.00014 Score=73.64 Aligned_cols=31 Identities=29% Similarity=0.320 Sum_probs=27.4
Q ss_pred eecceEEEeCCeEEEEEcCCCCCHHHHHHHHh
Q 000979 632 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLA 663 (1202)
Q Consensus 632 L~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~ 663 (1202)
+++.++.+.+| +++|+|||||||||+|++|.
T Consensus 15 ~~~~~i~f~~~-~tvi~G~NGsGKStil~Ai~ 45 (222)
T d1qhla_ 15 FFARTFDLDEL-VTTLSGGNGAGKSTTMAAFV 45 (222)
T ss_dssp EEEEEECHHHH-HHHHHSCCSHHHHHHHHHHH
T ss_pred EeeEEEEcCCC-eEEEECCCCCCHHHHHHHHH
Confidence 56777788776 99999999999999999996
|
| >d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric replicative helicase repA species: Escherichia coli [TaxId: 562]
Probab=96.10 E-value=0.035 Score=58.05 Aligned_cols=46 Identities=13% Similarity=0.178 Sum_probs=33.1
Q ss_pred HHhhCCCEEEEeCCCC-----CCCHHHHHHHHHHHHHHHhC-CCEEEEEecC
Q 000979 769 ELVANPSIIFMDEPTS-----GLDARAAAIVMRTVRNTVDT-GRTVVCTIHQ 814 (1202)
Q Consensus 769 aL~~~p~illlDEPts-----gLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~ 814 (1202)
.-..+|+++++|--+. --|......+++.|+++++. |.+||++.|.
T Consensus 128 ~~~~~~~lvviD~l~~~~~~~~~~~~~~~~~~~~l~~la~~~~~~vi~v~H~ 179 (274)
T d1nlfa_ 128 RAAEGRRLMVLDTLRRFHIEEENASGPMAQVIGRMEAIAADTGCSIVFLHHA 179 (274)
T ss_dssp HHHTTCSEEEEECGGGGCCSCTTCHHHHHHHHHHHHHHHHHHCCEEEEEEEC
T ss_pred HhccCccEEecCchhhhccccccchhhHHHHHHHHHHHhhcCCCceehhhhc
Confidence 3457999999995432 12566667788888887754 8888888774
|
| >d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Gluconate kinase domain: Gluconate kinase species: Escherichia coli [TaxId: 562]
Probab=95.96 E-value=0.0016 Score=63.35 Aligned_cols=27 Identities=33% Similarity=0.489 Sum_probs=24.0
Q ss_pred eCCeEEEEEcCCCCCHHHHHHHHhCCC
Q 000979 640 RPGVLTALMGVSGAGKTTLMDVLAGRK 666 (1202)
Q Consensus 640 ~~Ge~~al~G~sGaGKSTLl~~l~g~~ 666 (1202)
+.+.++.|+||+||||||+.+.|+.+.
T Consensus 4 ~~~~iivl~G~~GsGKsT~a~~La~~l 30 (171)
T d1knqa_ 4 HDHHIYVLMGVSGSGKSAVASEVAHQL 30 (171)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 467899999999999999999998654
|
| >d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=95.91 E-value=0.00073 Score=68.82 Aligned_cols=26 Identities=27% Similarity=0.479 Sum_probs=22.4
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCC
Q 000979 641 PGVLTALMGVSGAGKTTLMDVLAGRK 666 (1202)
Q Consensus 641 ~Ge~~al~G~sGaGKSTLl~~l~g~~ 666 (1202)
+|+.++++|+||+|||||+|.|.|..
T Consensus 96 ~~~~~vl~G~SGVGKSSLiN~L~~~~ 121 (231)
T d1t9ha2 96 QDKTTVFAGQSGVGKSSLLNAISPEL 121 (231)
T ss_dssp TTSEEEEEESHHHHHHHHHHHHCC--
T ss_pred ccceEEEECCCCccHHHHHHhhccHh
Confidence 47888999999999999999998853
|
| >d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=95.85 E-value=0.085 Score=53.27 Aligned_cols=31 Identities=29% Similarity=0.445 Sum_probs=25.4
Q ss_pred eecc-eEEEeCCeEEEEEcCCCCCHHHHHHHH
Q 000979 632 LNGV-SGAFRPGVLTALMGVSGAGKTTLMDVL 662 (1202)
Q Consensus 632 L~~v-s~~i~~Ge~~al~G~sGaGKSTLl~~l 662 (1202)
|+++ ++-+++|+++.|.|++|+|||||.--+
T Consensus 15 LD~~l~GGi~~G~~~~I~G~~G~GKT~la~~~ 46 (242)
T d1tf7a1 15 FDDISHGGLPIGRSTLVSGTSGTGKTLFSIQF 46 (242)
T ss_dssp HHHHTTSSEETTSEEEEEESTTSSHHHHHHHH
T ss_pred HHHhhcCCCcCCeEEEEEeCCCCCHHHHHHHH
Confidence 5553 356999999999999999999997543
|
| >d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=95.77 E-value=0.0021 Score=62.81 Aligned_cols=26 Identities=23% Similarity=0.305 Sum_probs=23.5
Q ss_pred eCCeEEEEEcCCCCCHHHHHHHHhCC
Q 000979 640 RPGVLTALMGVSGAGKTTLMDVLAGR 665 (1202)
Q Consensus 640 ~~Ge~~al~G~sGaGKSTLl~~l~g~ 665 (1202)
++|-++.|+|++||||||+-+.|+-+
T Consensus 4 ~~g~~I~l~G~~GsGKTTia~~La~~ 29 (183)
T d1m8pa3 4 TQGFTIFLTGYMNSGKDAIARALQVT 29 (183)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 47899999999999999999999854
|
| >d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Escherichia coli [TaxId: 562]
Probab=95.68 E-value=0.0024 Score=64.39 Aligned_cols=25 Identities=36% Similarity=0.531 Sum_probs=22.5
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCC
Q 000979 641 PGVLTALMGVSGAGKTTLMDVLAGR 665 (1202)
Q Consensus 641 ~Ge~~al~G~sGaGKSTLl~~l~g~ 665 (1202)
.|.++.|+||||+|||||.+.|.-.
T Consensus 1 ~G~livi~GPSG~GK~tl~~~L~~~ 25 (205)
T d1s96a_ 1 QGTLYIVSAPSGAGKSSLIQALLKT 25 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhh
Confidence 5899999999999999999998653
|
| >d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Bacillus stearothermophilus [TaxId: 1422]
Probab=95.44 E-value=0.0032 Score=61.05 Aligned_cols=23 Identities=30% Similarity=0.407 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCC
Q 000979 643 VLTALMGVSGAGKTTLMDVLAGR 665 (1202)
Q Consensus 643 e~~al~G~sGaGKSTLl~~l~g~ 665 (1202)
.+++|+|++|||||||++.|...
T Consensus 2 kii~I~G~~gSGKTTli~~l~~~ 24 (165)
T d1xjca_ 2 NVWQVVGYKHSGKTTLMEKWVAA 24 (165)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHHHH
Confidence 37899999999999999988753
|
| >d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Probable kinase LmjF30.1890 species: Leishmania major [TaxId: 5664]
Probab=95.37 E-value=0.0037 Score=60.71 Aligned_cols=27 Identities=26% Similarity=0.544 Sum_probs=23.3
Q ss_pred eCCeEEEEEcCCCCCHHHHHHHHhCCC
Q 000979 640 RPGVLTALMGVSGAGKTTLMDVLAGRK 666 (1202)
Q Consensus 640 ~~Ge~~al~G~sGaGKSTLl~~l~g~~ 666 (1202)
++|-.++|.||+||||||+.+.|+-..
T Consensus 3 pk~~~I~i~G~~GsGKTT~~~~La~~l 29 (174)
T d1y63a_ 3 PKGINILITGTPGTGKTSMAEMIAAEL 29 (174)
T ss_dssp CSSCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHh
Confidence 456689999999999999999998653
|
| >d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Polynucleotide kinase, kinase domain species: Bacteriophage T4 [TaxId: 10665]
Probab=95.35 E-value=0.0038 Score=59.28 Aligned_cols=22 Identities=23% Similarity=0.412 Sum_probs=19.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhC
Q 000979 643 VLTALMGVSGAGKTTLMDVLAG 664 (1202)
Q Consensus 643 e~~al~G~sGaGKSTLl~~l~g 664 (1202)
+++.|.||+|||||||.+.|..
T Consensus 3 klIii~G~pGsGKTTla~~L~~ 24 (152)
T d1ly1a_ 3 KIILTIGCPGSGKSTWAREFIA 24 (152)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 5788999999999999998753
|
| >d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain species: Haemophilus influenzae [TaxId: 727]
Probab=95.29 E-value=0.0032 Score=61.78 Aligned_cols=24 Identities=29% Similarity=0.404 Sum_probs=21.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCC
Q 000979 643 VLTALMGVSGAGKTTLMDVLAGRK 666 (1202)
Q Consensus 643 e~~al~G~sGaGKSTLl~~l~g~~ 666 (1202)
..++|.||+|||||||.+.|+...
T Consensus 8 K~I~i~G~~GsGKTTla~~La~~~ 31 (192)
T d1lw7a2 8 KTVAILGGESSGKSVLVNKLAAVF 31 (192)
T ss_dssp EEEEEECCTTSHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 468999999999999999998653
|
| >d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Escherichia coli [TaxId: 562]
Probab=95.24 E-value=0.027 Score=58.39 Aligned_cols=24 Identities=33% Similarity=0.487 Sum_probs=20.8
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCC
Q 000979 642 GVLTALMGVSGAGKTTLMDVLAGR 665 (1202)
Q Consensus 642 Ge~~al~G~sGaGKSTLl~~l~g~ 665 (1202)
..-+.|.||+|+|||++.+.|+..
T Consensus 45 ~~~iLL~GppGtGKT~la~~iA~~ 68 (256)
T d1lv7a_ 45 PKGVLMVGPPGTGKTLLAKAIAGE 68 (256)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEeeCCCCCCccHHHHHHHHH
Confidence 345789999999999999999864
|
| >d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=95.23 E-value=0.07 Score=54.43 Aligned_cols=59 Identities=19% Similarity=0.179 Sum_probs=38.6
Q ss_pred hCCCEEEEeCCCC---CCCHHHHHHHHHHHHHHH-hCCCEEEEEecCC---------CHHHHHhcceEEEEe
Q 000979 772 ANPSIIFMDEPTS---GLDARAAAIVMRTVRNTV-DTGRTVVCTIHQP---------SIDIFEAFDELFLMK 830 (1202)
Q Consensus 772 ~~p~illlDEPts---gLD~~~~~~v~~~l~~~~-~~g~tvi~~~H~~---------~~~~~~~~d~v~~l~ 830 (1202)
.+|++++.|--+. +.+..........|.+++ +.+.+++++.|.. +..+...+|-++.|.
T Consensus 115 ~~~~~vviDs~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ad~vi~l~ 186 (242)
T d1tf7a2 115 FKPARIAIDSLSALARGVSNNAFRQFVIGVTGYAKQEEITGLFTNTSDQFMGAHSITDSHISTITDTIILLQ 186 (242)
T ss_dssp TCCSEEEEECHHHHTSSSCHHHHHHHHHHHHHHHHHTTCEEEEEEECSSSSCCCSSCSSCCTTTCSEEEEEE
T ss_pred cCCceeeeecchhhhcCCCHHHHHHHHHHHHHHHHHcCCeEEEEEeeEeeccccccCCcceeeecceEEEEE
Confidence 4789999996443 445666555555555554 4588999988842 112445688888885
|
| >d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Chloramphenicol phosphotransferase domain: Chloramphenicol phosphotransferase species: Streptomyces venezuelae [TaxId: 54571]
Probab=95.09 E-value=0.005 Score=59.80 Aligned_cols=25 Identities=28% Similarity=0.306 Sum_probs=22.3
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCCC
Q 000979 642 GVLTALMGVSGAGKTTLMDVLAGRK 666 (1202)
Q Consensus 642 Ge~~al~G~sGaGKSTLl~~l~g~~ 666 (1202)
.+++.|.||+||||||+.+.|+.+.
T Consensus 3 ~kiI~l~G~~GsGKsTva~~L~~~l 27 (178)
T d1qhxa_ 3 TRMIILNGGSSAGKSGIVRCLQSVL 27 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHc
Confidence 4689999999999999999998754
|
| >d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Bacillus subtilis [TaxId: 1423]
Probab=95.07 E-value=0.0047 Score=61.55 Aligned_cols=23 Identities=39% Similarity=0.575 Sum_probs=20.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCC
Q 000979 644 LTALMGVSGAGKTTLMDVLAGRK 666 (1202)
Q Consensus 644 ~~al~G~sGaGKSTLl~~l~g~~ 666 (1202)
.++|+|++|+|||||+|.|+|..
T Consensus 25 ~I~lvG~~n~GKSTLin~L~g~~ 47 (195)
T d1svia_ 25 EIALAGRSNVGKSSFINSLINRK 47 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTC-
T ss_pred EEEEECCCCCCHHHHHHHhcCCC
Confidence 49999999999999999999864
|
| >d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein BH3686 species: Bacillus halodurans [TaxId: 86665]
Probab=95.06 E-value=0.0051 Score=59.49 Aligned_cols=24 Identities=33% Similarity=0.429 Sum_probs=21.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCC
Q 000979 643 VLTALMGVSGAGKTTLMDVLAGRK 666 (1202)
Q Consensus 643 e~~al~G~sGaGKSTLl~~l~g~~ 666 (1202)
.++.|.||+||||||+.+.|+...
T Consensus 3 klI~i~G~~GsGKTTva~~L~~~~ 26 (176)
T d2bdta1 3 KLYIITGPAGVGKSTTCKRLAAQL 26 (176)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHc
Confidence 478999999999999999998654
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.99 E-value=0.0043 Score=60.71 Aligned_cols=22 Identities=36% Similarity=0.428 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhCC
Q 000979 644 LTALMGVSGAGKTTLMDVLAGR 665 (1202)
Q Consensus 644 ~~al~G~sGaGKSTLl~~l~g~ 665 (1202)
.+.|.||+|+|||||++.++..
T Consensus 3 ~v~ItG~~GtGKTtl~~~i~~~ 24 (189)
T d2i3ba1 3 HVFLTGPPGVGKTTLIHKASEV 24 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHH
Confidence 5889999999999999999874
|
| >d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]
Probab=94.96 E-value=0.0051 Score=59.56 Aligned_cols=21 Identities=48% Similarity=0.615 Sum_probs=18.9
Q ss_pred EEEEcCCCCCHHHHHHHHhCC
Q 000979 645 TALMGVSGAGKTTLMDVLAGR 665 (1202)
Q Consensus 645 ~al~G~sGaGKSTLl~~l~g~ 665 (1202)
+.|+||+||||||+.+.|+-+
T Consensus 7 I~i~G~pGsGKTTia~~La~~ 27 (173)
T d1rkba_ 7 ILLTGTPGVGKTTLGKELASK 27 (173)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 679999999999999999854
|
| >d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein rbstp0775 species: Bacillus stearothermophilus [TaxId: 1422]
Probab=94.81 E-value=0.0058 Score=60.62 Aligned_cols=21 Identities=38% Similarity=0.547 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhC
Q 000979 644 LTALMGVSGAGKTTLMDVLAG 664 (1202)
Q Consensus 644 ~~al~G~sGaGKSTLl~~l~g 664 (1202)
++||-||+|||||||.+.|+-
T Consensus 24 iIgI~G~~GSGKSTla~~L~~ 44 (198)
T d1rz3a_ 24 VLGIDGLSRSGKTTLANQLSQ 44 (198)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 789999999999999999974
|
| >d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Bacillus subtilis [TaxId: 1423]
Probab=94.70 E-value=0.005 Score=60.70 Aligned_cols=21 Identities=33% Similarity=0.650 Sum_probs=19.6
Q ss_pred EEEEcCCCCCHHHHHHHHhCC
Q 000979 645 TALMGVSGAGKTTLMDVLAGR 665 (1202)
Q Consensus 645 ~al~G~sGaGKSTLl~~l~g~ 665 (1202)
+||+|++++|||||+|.|+|.
T Consensus 4 VaiiG~~nvGKSSLin~L~~~ 24 (185)
T d1lnza2 4 VGLVGFPSVGKSTLLSVVSSA 24 (185)
T ss_dssp EEEESSTTSSHHHHHHHSEEE
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 799999999999999999874
|
| >d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein engB species: Pyrococcus horikoshii [TaxId: 53953]
Probab=94.67 E-value=0.0068 Score=59.50 Aligned_cols=23 Identities=39% Similarity=0.559 Sum_probs=20.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCC
Q 000979 644 LTALMGVSGAGKTTLMDVLAGRK 666 (1202)
Q Consensus 644 ~~al~G~sGaGKSTLl~~l~g~~ 666 (1202)
-++|+|++|+|||||+|.|.|..
T Consensus 2 ~I~lvG~~nvGKSsLin~l~~~~ 24 (184)
T d2cxxa1 2 TIIFAGRSNVGKSTLIYRLTGKK 24 (184)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47999999999999999999853
|
| >d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=94.66 E-value=0.0072 Score=59.18 Aligned_cols=23 Identities=26% Similarity=0.406 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCC
Q 000979 643 VLTALMGVSGAGKTTLMDVLAGR 665 (1202)
Q Consensus 643 e~~al~G~sGaGKSTLl~~l~g~ 665 (1202)
.+++|.|++||||||+.+.|+-+
T Consensus 2 kiI~i~G~~GsGKsT~~~~L~~~ 24 (190)
T d1khta_ 2 KVVVVTGVPGVGSTTSSQLAMDN 24 (190)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 58999999999999999999753
|
| >d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Escherichia coli [TaxId: 562]
Probab=94.66 E-value=0.0066 Score=57.97 Aligned_cols=23 Identities=39% Similarity=0.410 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCC
Q 000979 644 LTALMGVSGAGKTTLMDVLAGRK 666 (1202)
Q Consensus 644 ~~al~G~sGaGKSTLl~~l~g~~ 666 (1202)
.+.|+||+||||||+-+.|+-..
T Consensus 4 ~I~l~G~~GsGKSTvak~La~~L 26 (169)
T d1kaga_ 4 NIFLVGPMGAGKSTIGRQLAQQL 26 (169)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 47788999999999999998644
|
| >d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.58 E-value=0.0071 Score=59.81 Aligned_cols=21 Identities=38% Similarity=0.589 Sum_probs=19.0
Q ss_pred EEEEcCCCCCHHHHHHHHhCC
Q 000979 645 TALMGVSGAGKTTLMDVLAGR 665 (1202)
Q Consensus 645 ~al~G~sGaGKSTLl~~l~g~ 665 (1202)
+.|+||||||||||++.|...
T Consensus 4 Ivl~GpsG~GK~tl~~~L~~~ 24 (186)
T d1gkya_ 4 IVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 689999999999999999754
|
| >d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase-like domain of Cask species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.55 E-value=0.0082 Score=58.87 Aligned_cols=23 Identities=22% Similarity=0.479 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCC
Q 000979 643 VLTALMGVSGAGKTTLMDVLAGR 665 (1202)
Q Consensus 643 e~~al~G~sGaGKSTLl~~l~g~ 665 (1202)
..+.|+||||+|||||++.|...
T Consensus 4 k~ivl~Gpsg~GK~tl~~~L~~~ 26 (178)
T d1kgda_ 4 KTLVLLGAHGVGRRHIKNTLITK 26 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHHh
Confidence 47899999999999999998753
|
| >d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Dictyostelium discoideum [TaxId: 44689]
Probab=94.52 E-value=0.0085 Score=59.52 Aligned_cols=23 Identities=22% Similarity=0.289 Sum_probs=20.9
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhC
Q 000979 642 GVLTALMGVSGAGKTTLMDVLAG 664 (1202)
Q Consensus 642 Ge~~al~G~sGaGKSTLl~~l~g 664 (1202)
..++.|+||+||||||+.+.|+-
T Consensus 6 p~iI~i~G~pGSGKsT~a~~La~ 28 (194)
T d1qf9a_ 6 PNVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999999984
|
| >d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.51 E-value=0.005 Score=61.02 Aligned_cols=25 Identities=44% Similarity=0.501 Sum_probs=22.5
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCC
Q 000979 641 PGVLTALMGVSGAGKTTLMDVLAGR 665 (1202)
Q Consensus 641 ~Ge~~al~G~sGaGKSTLl~~l~g~ 665 (1202)
.|-++.|+|++||||||+-+.|+-+
T Consensus 18 ~g~vI~L~G~pGSGKTTiAk~La~~ 42 (195)
T d1x6va3 18 RGCTVWLTGLSGAGKTTVSMALEEY 42 (195)
T ss_dssp CCEEEEEESSCHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 5779999999999999999999853
|
| >d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=94.49 E-value=0.0086 Score=58.11 Aligned_cols=23 Identities=30% Similarity=0.525 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCC
Q 000979 644 LTALMGVSGAGKTTLMDVLAGRK 666 (1202)
Q Consensus 644 ~~al~G~sGaGKSTLl~~l~g~~ 666 (1202)
.++|+|++|+|||||++.|+|..
T Consensus 2 ~V~liG~~n~GKSsLi~~L~~~~ 24 (171)
T d1mkya1 2 TVLIVGRPNVGKSTLFNKLVKKK 24 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHC--
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999854
|
| >d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: ATP(GTP)-binding protein PAB0955 species: Pyrococcus abyssi [TaxId: 29292]
Probab=94.34 E-value=0.0074 Score=62.16 Aligned_cols=21 Identities=33% Similarity=0.632 Sum_probs=19.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhC
Q 000979 644 LTALMGVSGAGKTTLMDVLAG 664 (1202)
Q Consensus 644 ~~al~G~sGaGKSTLl~~l~g 664 (1202)
+++|+||.|||||||++.|..
T Consensus 2 vi~v~G~~GsGKTTLl~~ll~ 22 (244)
T d1yrba1 2 IVVFVGTAGSGKTTLTGEFGR 22 (244)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCCcHHHHHHHHHH
Confidence 689999999999999999964
|
| >d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=94.34 E-value=0.01 Score=57.80 Aligned_cols=23 Identities=39% Similarity=0.709 Sum_probs=21.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCC
Q 000979 644 LTALMGVSGAGKTTLMDVLAGRK 666 (1202)
Q Consensus 644 ~~al~G~sGaGKSTLl~~l~g~~ 666 (1202)
+++|+|.+|+|||||+|.|+|..
T Consensus 7 ~I~iiG~~nvGKSSLin~L~~~~ 29 (179)
T d1egaa1 7 FIAIVGRPNVGKSTLLNKLLGQK 29 (179)
T ss_dssp EEEEECSSSSSHHHHHHHHHTCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 48999999999999999999863
|
| >d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.15 E-value=0.01 Score=58.91 Aligned_cols=21 Identities=48% Similarity=0.623 Sum_probs=18.7
Q ss_pred EEEEcCCCCCHHHHHHHHhCC
Q 000979 645 TALMGVSGAGKTTLMDVLAGR 665 (1202)
Q Consensus 645 ~al~G~sGaGKSTLl~~l~g~ 665 (1202)
+.|+||||||||||.+.|.-.
T Consensus 3 Ivl~GPsGsGK~tl~~~L~~~ 23 (190)
T d1lvga_ 3 VVLSGPSGAGKSTLLKKLFQE 23 (190)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 679999999999999998653
|
| >d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Probab=94.13 E-value=0.012 Score=57.55 Aligned_cols=23 Identities=39% Similarity=0.664 Sum_probs=21.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCC
Q 000979 644 LTALMGVSGAGKTTLMDVLAGRK 666 (1202)
Q Consensus 644 ~~al~G~sGaGKSTLl~~l~g~~ 666 (1202)
+++|+|++|+|||||+|.|+|..
T Consensus 7 ~I~lvG~~~~GKSSLin~l~~~~ 29 (178)
T d1wf3a1 7 FVAIVGKPNVGKSTLLNNLLGVK 29 (178)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 69999999999999999999863
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.11 E-value=0.0098 Score=59.62 Aligned_cols=23 Identities=26% Similarity=0.447 Sum_probs=21.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCC
Q 000979 644 LTALMGVSGAGKTTLMDVLAGRK 666 (1202)
Q Consensus 644 ~~al~G~sGaGKSTLl~~l~g~~ 666 (1202)
.++|+|++|||||||+|.|.|..
T Consensus 5 ~V~lvG~~n~GKTSLln~l~~~~ 27 (209)
T d1nrjb_ 5 SIIIAGPQNSGKTSLLTLLTTDS 27 (209)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999854
|
| >d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Thermus thermophilus [TaxId: 274]
Probab=94.11 E-value=0.0079 Score=58.94 Aligned_cols=22 Identities=27% Similarity=0.555 Sum_probs=20.3
Q ss_pred EEEEcCCCCCHHHHHHHHhCCC
Q 000979 645 TALMGVSGAGKTTLMDVLAGRK 666 (1202)
Q Consensus 645 ~al~G~sGaGKSTLl~~l~g~~ 666 (1202)
+||+|++|+|||||+|.|+|..
T Consensus 4 VaivG~~nvGKSTLin~L~~~~ 25 (180)
T d1udxa2 4 VGLVGYPNAGKSSLLAAMTRAH 25 (180)
T ss_dssp EEEECCGGGCHHHHHHHHCSSC
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 7999999999999999999853
|
| >d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Campylobacter jejuni [TaxId: 197]
Probab=94.01 E-value=0.011 Score=56.77 Aligned_cols=22 Identities=36% Similarity=0.558 Sum_probs=19.4
Q ss_pred EEEEcCCCCCHHHHHHHHhCCC
Q 000979 645 TALMGVSGAGKTTLMDVLAGRK 666 (1202)
Q Consensus 645 ~al~G~sGaGKSTLl~~l~g~~ 666 (1202)
+.|+|++||||||+.+.|+...
T Consensus 3 I~liG~~GsGKsTi~k~La~~l 24 (161)
T d1viaa_ 3 IVFIGFMGSGKSTLARALAKDL 24 (161)
T ss_dssp EEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6788999999999999998643
|
| >d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=94.00 E-value=0.0094 Score=59.23 Aligned_cols=27 Identities=19% Similarity=0.394 Sum_probs=23.5
Q ss_pred EeCCeEEEEEcCCCCCHHHHHHHHhCC
Q 000979 639 FRPGVLTALMGVSGAGKTTLMDVLAGR 665 (1202)
Q Consensus 639 i~~Ge~~al~G~sGaGKSTLl~~l~g~ 665 (1202)
++.+.++.|+||+||||||+.+.|+-.
T Consensus 5 ~~~~~iI~l~G~pGSGKsT~a~~La~~ 31 (194)
T d3adka_ 5 LKKSKIIFVVGGPGSGKGTQCEKIVQK 31 (194)
T ss_dssp HHTSCEEEEEECTTSSHHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 346689999999999999999999854
|
| >d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Uridylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.97 E-value=0.013 Score=58.24 Aligned_cols=25 Identities=28% Similarity=0.298 Sum_probs=21.7
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCCC
Q 000979 642 GVLTALMGVSGAGKTTLMDVLAGRK 666 (1202)
Q Consensus 642 Ge~~al~G~sGaGKSTLl~~l~g~~ 666 (1202)
-.++.|+||+||||||+.+.|+...
T Consensus 8 ~~iI~i~GppGSGKsT~a~~La~~~ 32 (196)
T d1ukza_ 8 VSVIFVLGGPGAGKGTQCEKLVKDY 32 (196)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 3479999999999999999998643
|
| >d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=93.96 E-value=0.0098 Score=58.06 Aligned_cols=23 Identities=35% Similarity=0.622 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCC
Q 000979 644 LTALMGVSGAGKTTLMDVLAGRK 666 (1202)
Q Consensus 644 ~~al~G~sGaGKSTLl~~l~g~~ 666 (1202)
-++|+|++|||||||++.|.+..
T Consensus 15 kI~lvG~~~vGKTsLl~~l~~~~ 37 (186)
T d1f6ba_ 15 KLVFLGLDNAGKTTLLHMLKDDR 37 (186)
T ss_dssp EEEEEEETTSSHHHHHHHHSCC-
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999998743
|
| >d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=93.95 E-value=0.012 Score=57.83 Aligned_cols=23 Identities=26% Similarity=0.549 Sum_probs=20.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCC
Q 000979 644 LTALMGVSGAGKTTLMDVLAGRK 666 (1202)
Q Consensus 644 ~~al~G~sGaGKSTLl~~l~g~~ 666 (1202)
-+||+|++|+|||||+|.|+|..
T Consensus 10 kV~iiG~~~~GKSTLin~l~~~~ 32 (186)
T d1mkya2 10 KVAIVGRPNVGKSTLFNAILNKE 32 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHTST
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 47999999999999999999853
|
| >d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Uridine-cytidine kinase 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.80 E-value=0.013 Score=58.95 Aligned_cols=22 Identities=18% Similarity=0.336 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhCC
Q 000979 644 LTALMGVSGAGKTTLMDVLAGR 665 (1202)
Q Consensus 644 ~~al~G~sGaGKSTLl~~l~g~ 665 (1202)
++||-||+||||||+.+.|+-.
T Consensus 4 iIgI~G~~gSGKSTla~~L~~~ 25 (213)
T d1uj2a_ 4 LIGVSGGTASGKSSVCAKIVQL 25 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999753
|
| >d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF1 [TaxId: 9606]
Probab=93.78 E-value=0.012 Score=55.91 Aligned_cols=21 Identities=33% Similarity=0.453 Sum_probs=19.1
Q ss_pred EEEEcCCCCCHHHHHHHHhCC
Q 000979 645 TALMGVSGAGKTTLMDVLAGR 665 (1202)
Q Consensus 645 ~al~G~sGaGKSTLl~~l~g~ 665 (1202)
+.|+|++|+|||||++.+.+.
T Consensus 3 ivlvG~~~vGKSsLi~~l~~~ 23 (160)
T d1r8sa_ 3 ILMVGLDAAGKTTILYKLKLG 23 (160)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 679999999999999999864
|
| >d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable tRNA modification GTPase TrmE (MnmE), G domain species: Escherichia coli [TaxId: 562]
Probab=93.78 E-value=0.016 Score=55.36 Aligned_cols=23 Identities=39% Similarity=0.706 Sum_probs=20.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCC
Q 000979 644 LTALMGVSGAGKTTLMDVLAGRK 666 (1202)
Q Consensus 644 ~~al~G~sGaGKSTLl~~l~g~~ 666 (1202)
-++|+|++|+|||||+|.|+|..
T Consensus 3 kI~lvG~~nvGKSsLin~l~~~~ 25 (161)
T d2gj8a1 3 KVVIAGRPNAGKSSLLNALAGRE 25 (161)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999999864
|
| >d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.77 E-value=0.016 Score=58.16 Aligned_cols=28 Identities=32% Similarity=0.514 Sum_probs=25.4
Q ss_pred EEEeCCeEEEEEcCCCCCHHHHHHHHhC
Q 000979 637 GAFRPGVLTALMGVSGAGKTTLMDVLAG 664 (1202)
Q Consensus 637 ~~i~~Ge~~al~G~sGaGKSTLl~~l~g 664 (1202)
+-+++|+++.|.||+|+|||||.--++.
T Consensus 18 GGi~~G~v~~i~G~~GsGKT~l~l~la~ 45 (242)
T d1n0wa_ 18 GGIETGSITEMFGEFRTGKTQICHTLAV 45 (242)
T ss_dssp TSEETTSEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCcCCEEEEEEeCCCCCHHHHHHHHHH
Confidence 4799999999999999999999887764
|
| >d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.70 E-value=0.013 Score=55.84 Aligned_cols=23 Identities=35% Similarity=0.608 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCC
Q 000979 644 LTALMGVSGAGKTTLMDVLAGRK 666 (1202)
Q Consensus 644 ~~al~G~sGaGKSTLl~~l~g~~ 666 (1202)
-++|+|++|+|||||++.|.+..
T Consensus 2 KI~liG~~nvGKSSLln~l~~~~ 24 (166)
T d2qtvb1 2 KLLFLGLDNAGKTTLLHMLKNDR 24 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 36799999999999999999853
|
| >d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Erwinia chrysanthemi [TaxId: 556]
Probab=93.60 E-value=0.013 Score=56.73 Aligned_cols=22 Identities=32% Similarity=0.363 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhCC
Q 000979 644 LTALMGVSGAGKTTLMDVLAGR 665 (1202)
Q Consensus 644 ~~al~G~sGaGKSTLl~~l~g~ 665 (1202)
.+.|+|++||||||+-+.|+-.
T Consensus 4 ~Iil~G~~GsGKSTia~~LA~~ 25 (170)
T d1e6ca_ 4 PIFMVGARGCGMTTVGRELARA 25 (170)
T ss_dssp CEEEESCTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 3568999999999999999854
|
| >d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL1 [TaxId: 9606]
Probab=93.57 E-value=0.014 Score=55.97 Aligned_cols=21 Identities=38% Similarity=0.585 Sum_probs=19.7
Q ss_pred EEEEcCCCCCHHHHHHHHhCC
Q 000979 645 TALMGVSGAGKTTLMDVLAGR 665 (1202)
Q Consensus 645 ~al~G~sGaGKSTLl~~l~g~ 665 (1202)
++|+|++|+|||||++.+.+.
T Consensus 8 I~ivG~~~vGKSSLi~~~~~~ 28 (169)
T d1upta_ 8 ILILGLDGAGKTTILYRLQVG 28 (169)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 789999999999999999875
|
| >d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]
Probab=93.53 E-value=0.017 Score=56.93 Aligned_cols=25 Identities=44% Similarity=0.531 Sum_probs=21.7
Q ss_pred eCCeEEEEEcCCCCCHHHHHHHHhC
Q 000979 640 RPGVLTALMGVSGAGKTTLMDVLAG 664 (1202)
Q Consensus 640 ~~Ge~~al~G~sGaGKSTLl~~l~g 664 (1202)
++|=-+.|+||+||||||+-+.|+-
T Consensus 1 p~~~riil~G~pGSGKsT~a~~La~ 25 (190)
T d1ak2a1 1 PKGVRAVLLGPPGAGKGTQAPKLAK 25 (190)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCccEEEEECCCCCCHHHHHHHHHH
Confidence 3566778999999999999999984
|
| >d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Maize (Zea mays) [TaxId: 4577]
Probab=93.51 E-value=0.015 Score=57.48 Aligned_cols=22 Identities=18% Similarity=0.373 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhCC
Q 000979 644 LTALMGVSGAGKTTLMDVLAGR 665 (1202)
Q Consensus 644 ~~al~G~sGaGKSTLl~~l~g~ 665 (1202)
.+.|+||+||||||+.+.|+-.
T Consensus 5 ~I~i~GppGsGKsT~a~~La~~ 26 (189)
T d1zaka1 5 KVMISGAPASGKGTQCELIKTK 26 (189)
T ss_dssp CEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3679999999999999999743
|
| >d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.49 E-value=0.018 Score=55.95 Aligned_cols=24 Identities=25% Similarity=0.380 Sum_probs=21.0
Q ss_pred eCCeEEEEEcCCCCCHHHHHHHHh
Q 000979 640 RPGVLTALMGVSGAGKTTLMDVLA 663 (1202)
Q Consensus 640 ~~Ge~~al~G~sGaGKSTLl~~l~ 663 (1202)
++-+++.++|++||||||+.+-++
T Consensus 12 ~~p~liil~G~pGsGKST~a~~l~ 35 (172)
T d1yj5a2 12 PNPEVVVAVGFPGAGKSTFIQEHL 35 (172)
T ss_dssp SSCCEEEEECCTTSSHHHHHHHHT
T ss_pred CCCEEEEEECCCCCCHHHHHHHHH
Confidence 345799999999999999999885
|
| >d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.39 E-value=0.018 Score=57.05 Aligned_cols=22 Identities=27% Similarity=0.425 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhCC
Q 000979 644 LTALMGVSGAGKTTLMDVLAGR 665 (1202)
Q Consensus 644 ~~al~G~sGaGKSTLl~~l~g~ 665 (1202)
++.|+||+||||||..+.|+-.
T Consensus 3 iI~i~GppGSGKsT~a~~La~~ 24 (194)
T d1teva_ 3 VVFVLGGPGAGKGTQCARIVEK 24 (194)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6799999999999999999853
|
| >d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=93.39 E-value=0.017 Score=55.62 Aligned_cols=22 Identities=36% Similarity=0.549 Sum_probs=18.9
Q ss_pred EEEEcCCCCCHHHHHHHHhCCC
Q 000979 645 TALMGVSGAGKTTLMDVLAGRK 666 (1202)
Q Consensus 645 ~al~G~sGaGKSTLl~~l~g~~ 666 (1202)
+.|+|++||||||+-+.|+.+.
T Consensus 4 IvliG~~G~GKSTig~~La~~l 25 (165)
T d2iyva1 4 AVLVGLPGSGKSTIGRRLAKAL 25 (165)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 4577999999999999998643
|
| >d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=93.30 E-value=0.017 Score=56.29 Aligned_cols=21 Identities=38% Similarity=0.597 Sum_probs=18.8
Q ss_pred EEEEcCCCCCHHHHHHHHhCC
Q 000979 645 TALMGVSGAGKTTLMDVLAGR 665 (1202)
Q Consensus 645 ~al~G~sGaGKSTLl~~l~g~ 665 (1202)
+.|+||+||||||+.+.|+-.
T Consensus 3 I~i~G~pGSGKsT~a~~La~~ 23 (182)
T d1zina1 3 LVLMGLPGAGKGTQAEKIVAA 23 (182)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 679999999999999999753
|
| >d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Probab=93.27 E-value=0.019 Score=56.32 Aligned_cols=23 Identities=22% Similarity=0.462 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCC
Q 000979 643 VLTALMGVSGAGKTTLMDVLAGR 665 (1202)
Q Consensus 643 e~~al~G~sGaGKSTLl~~l~g~ 665 (1202)
.++.|.|++||||||+.+.|+.+
T Consensus 2 kiivi~G~~GsGKTT~~~~La~~ 24 (194)
T d1nksa_ 2 KIGIVTGIPGVGKSTVLAKVKEI 24 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 36788999999999999999864
|
| >d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL2 [TaxId: 10090]
Probab=93.25 E-value=0.019 Score=55.08 Aligned_cols=21 Identities=33% Similarity=0.678 Sum_probs=19.6
Q ss_pred EEEEcCCCCCHHHHHHHHhCC
Q 000979 645 TALMGVSGAGKTTLMDVLAGR 665 (1202)
Q Consensus 645 ~al~G~sGaGKSTLl~~l~g~ 665 (1202)
++|+|++|+|||||++.|.+.
T Consensus 5 i~ivG~~~~GKTsLi~~l~~~ 25 (165)
T d1ksha_ 5 LLMLGLDNAGKTTILKKFNGE 25 (165)
T ss_dssp EEEECSTTSSHHHHHHHHTTC
T ss_pred EEEECCCCCCHHHHHHHHcCC
Confidence 789999999999999999884
|
| >d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Escherichia coli [TaxId: 562]
Probab=93.17 E-value=0.012 Score=57.61 Aligned_cols=23 Identities=35% Similarity=0.534 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCC
Q 000979 644 LTALMGVSGAGKTTLMDVLAGRK 666 (1202)
Q Consensus 644 ~~al~G~sGaGKSTLl~~l~g~~ 666 (1202)
.++|+|++++|||||+|.|.|..
T Consensus 18 ~I~lvG~~NvGKSSL~n~L~~~~ 40 (188)
T d1puia_ 18 EVAFAGRSNAGKSSALNTLTNQK 40 (188)
T ss_dssp EEEEEECTTSSHHHHHTTTCCC-
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 49999999999999999998854
|
| >d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus globisporus [TaxId: 1459]
Probab=92.84 E-value=0.024 Score=55.40 Aligned_cols=22 Identities=41% Similarity=0.592 Sum_probs=19.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhCC
Q 000979 644 LTALMGVSGAGKTTLMDVLAGR 665 (1202)
Q Consensus 644 ~~al~G~sGaGKSTLl~~l~g~ 665 (1202)
.+.|+||+||||||+.+.|+-.
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~ 23 (182)
T d1s3ga1 2 NIVLMGLPGAGKGTQADRIVEK 23 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3679999999999999999854
|
| >d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit species: Streptococcus pyogenes [TaxId: 1314]
Probab=92.74 E-value=0.022 Score=59.45 Aligned_cols=26 Identities=27% Similarity=0.314 Sum_probs=22.4
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCCCC
Q 000979 642 GVLTALMGVSGAGKTTLMDVLAGRKT 667 (1202)
Q Consensus 642 Ge~~al~G~sGaGKSTLl~~l~g~~~ 667 (1202)
...+.|.||+|||||||.+.|++...
T Consensus 32 P~~ilL~GpPGtGKT~la~~la~~~~ 57 (273)
T d1gvnb_ 32 PTAFLLGGQPGSGKTSLRSAIFEETQ 57 (273)
T ss_dssp CEEEEEECCTTSCTHHHHHHHHHHTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 34688999999999999999998543
|
| >d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor SelB, N-terminal domain species: Methanococcus maripaludis [TaxId: 39152]
Probab=92.71 E-value=0.023 Score=55.44 Aligned_cols=21 Identities=38% Similarity=0.452 Sum_probs=19.9
Q ss_pred EEEEcCCCCCHHHHHHHHhCC
Q 000979 645 TALMGVSGAGKTTLMDVLAGR 665 (1202)
Q Consensus 645 ~al~G~sGaGKSTLl~~l~g~ 665 (1202)
+||+|+..||||||+|.|+|.
T Consensus 8 IaiiG~~naGKSTL~n~L~~~ 28 (179)
T d1wb1a4 8 LGIFGHIDHGKTTLSKVLTEI 28 (179)
T ss_dssp EEEEECTTSSHHHHHHHHHTT
T ss_pred EEEEeCCCCcHHHHHHHHHHh
Confidence 899999999999999999874
|
| >d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Chloroplast protein translocon GTPase Toc34 species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=92.71 E-value=0.024 Score=58.96 Aligned_cols=23 Identities=26% Similarity=0.595 Sum_probs=20.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCC
Q 000979 644 LTALMGVSGAGKTTLMDVLAGRK 666 (1202)
Q Consensus 644 ~~al~G~sGaGKSTLl~~l~g~~ 666 (1202)
.++|+|.+|+|||||+|.|.|..
T Consensus 34 ~I~LvG~tg~GKSSliN~ilg~~ 56 (257)
T d1h65a_ 34 TILVMGKGGVGKSSTVNSIIGER 56 (257)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 38999999999999999999964
|
| >d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=92.66 E-value=0.026 Score=57.09 Aligned_cols=22 Identities=27% Similarity=0.451 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhCC
Q 000979 644 LTALMGVSGAGKTTLMDVLAGR 665 (1202)
Q Consensus 644 ~~al~G~sGaGKSTLl~~l~g~ 665 (1202)
+++|-||+||||||+-+.|+-.
T Consensus 5 ~IaIdGp~GsGKgT~ak~La~~ 26 (223)
T d1q3ta_ 5 QIAIDGPASSGKSTVAKIIAKD 26 (223)
T ss_dssp EEEEECSSCSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999999864
|
| >d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=92.64 E-value=0.026 Score=56.39 Aligned_cols=22 Identities=27% Similarity=0.468 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhC
Q 000979 643 VLTALMGVSGAGKTTLMDVLAG 664 (1202)
Q Consensus 643 e~~al~G~sGaGKSTLl~~l~g 664 (1202)
-+++++|.+|||||||.+.|+.
T Consensus 3 ~li~l~GlpgsGKSTla~~L~~ 24 (213)
T d1bifa1 3 TLIVMVGLPARGKTYISKKLTR 24 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 3789999999999999999985
|
| >d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Thermus thermophilus [TaxId: 274]
Probab=92.47 E-value=0.027 Score=55.55 Aligned_cols=20 Identities=30% Similarity=0.584 Sum_probs=18.9
Q ss_pred EEEEEcCCCCCHHHHHHHHh
Q 000979 644 LTALMGVSGAGKTTLMDVLA 663 (1202)
Q Consensus 644 ~~al~G~sGaGKSTLl~~l~ 663 (1202)
++||.|++||||||+.+.|.
T Consensus 5 IIgitG~~gSGKstva~~l~ 24 (191)
T d1uf9a_ 5 IIGITGNIGSGKSTVAALLR 24 (191)
T ss_dssp EEEEEECTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 78999999999999999995
|
| >d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Escherichia coli [TaxId: 562]
Probab=92.41 E-value=0.026 Score=54.93 Aligned_cols=21 Identities=29% Similarity=0.406 Sum_probs=18.7
Q ss_pred EEEEcCCCCCHHHHHHHHhCC
Q 000979 645 TALMGVSGAGKTTLMDVLAGR 665 (1202)
Q Consensus 645 ~al~G~sGaGKSTLl~~l~g~ 665 (1202)
+.|+||+||||||..+.|+-.
T Consensus 3 I~i~G~pGSGKsT~~~~La~~ 23 (179)
T d1e4va1 3 IILLGAPVAGKGTQAQFIMEK 23 (179)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 678999999999999999743
|
| >d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=92.35 E-value=0.033 Score=55.76 Aligned_cols=25 Identities=36% Similarity=0.454 Sum_probs=22.8
Q ss_pred eCCeEEEEEcCCCCCHHHHHHHHhC
Q 000979 640 RPGVLTALMGVSGAGKTTLMDVLAG 664 (1202)
Q Consensus 640 ~~Ge~~al~G~sGaGKSTLl~~l~g 664 (1202)
++|-++-|.|.|||||||+.+.|.-
T Consensus 22 ~kg~vIwltGlsGsGKTTia~~L~~ 46 (208)
T d1m7ga_ 22 QRGLTIWLTGLSASGKSTLAVELEH 46 (208)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 5788999999999999999999974
|
| >d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermus aquaticus [TaxId: 271]
Probab=92.34 E-value=0.033 Score=55.47 Aligned_cols=24 Identities=38% Similarity=0.599 Sum_probs=20.6
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhC
Q 000979 641 PGVLTALMGVSGAGKTTLMDVLAG 664 (1202)
Q Consensus 641 ~Ge~~al~G~sGaGKSTLl~~l~g 664 (1202)
++.+++++||+|+||||.+-=|+.
T Consensus 5 ~~~vi~lvGptGvGKTTTiaKLA~ 28 (207)
T d1okkd2 5 KGRVVLVVGVNGVGKTTTIAKLGR 28 (207)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 467999999999999998777764
|
| >d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: TrmE GTPase domain species: Thermotoga maritima [TaxId: 2336]
Probab=92.30 E-value=0.0092 Score=57.03 Aligned_cols=21 Identities=29% Similarity=0.542 Sum_probs=19.8
Q ss_pred EEEEcCCCCCHHHHHHHHhCC
Q 000979 645 TALMGVSGAGKTTLMDVLAGR 665 (1202)
Q Consensus 645 ~al~G~sGaGKSTLl~~l~g~ 665 (1202)
++|+|++|+|||||+|.|+|.
T Consensus 3 I~liG~~n~GKSSLin~l~g~ 23 (160)
T d1xzpa2 3 MVIVGKPNVGKSTLLNRLLNE 23 (160)
T ss_dssp EEEECCHHHHTCHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 799999999999999999984
|
| >d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Mouse (Mus musculus) [TaxId: 10090]
Probab=92.29 E-value=0.026 Score=56.44 Aligned_cols=22 Identities=27% Similarity=0.354 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhCC
Q 000979 644 LTALMGVSGAGKTTLMDVLAGR 665 (1202)
Q Consensus 644 ~~al~G~sGaGKSTLl~~l~g~ 665 (1202)
-++|+|++|+|||||++.|.+.
T Consensus 2 ~V~ivG~~~~GKTsLl~~l~~~ 23 (207)
T d2fh5b1 2 AVLFVGLCDSGKTLLFVRLLTG 23 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4899999999999999999874
|
| >d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=92.26 E-value=0.029 Score=54.67 Aligned_cols=21 Identities=43% Similarity=0.515 Sum_probs=18.9
Q ss_pred EEEEcCCCCCHHHHHHHHhCC
Q 000979 645 TALMGVSGAGKTTLMDVLAGR 665 (1202)
Q Consensus 645 ~al~G~sGaGKSTLl~~l~g~ 665 (1202)
+.|+||+||||||+-+.|+-.
T Consensus 3 I~i~G~pGsGKsT~a~~La~~ 23 (181)
T d2cdna1 3 VLLLGPPGAGKGTQAVKLAEK 23 (181)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 678999999999999999853
|
| >d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyribonucleoside kinase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=92.24 E-value=0.025 Score=55.95 Aligned_cols=24 Identities=29% Similarity=0.401 Sum_probs=21.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCC
Q 000979 643 VLTALMGVSGAGKTTLMDVLAGRK 666 (1202)
Q Consensus 643 e~~al~G~sGaGKSTLl~~l~g~~ 666 (1202)
-+++|-|+.||||||+++.|+...
T Consensus 10 ~~I~ieG~~GsGKTTl~~~L~~~l 33 (197)
T d2vp4a1 10 FTVLIEGNIGSGKTTYLNHFEKYK 33 (197)
T ss_dssp EEEEEECSTTSCHHHHHHTTGGGT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 489999999999999999998644
|
| >d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL5A [TaxId: 9606]
Probab=92.20 E-value=0.03 Score=54.15 Aligned_cols=23 Identities=26% Similarity=0.442 Sum_probs=20.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCC
Q 000979 644 LTALMGVSGAGKTTLMDVLAGRK 666 (1202)
Q Consensus 644 ~~al~G~sGaGKSTLl~~l~g~~ 666 (1202)
-++|+|.+|||||||++.|.+..
T Consensus 17 kI~vvG~~~~GKSsLi~rl~~~~ 39 (177)
T d1zj6a1 17 KVIIVGLDNAGKTTILYQFSMNE 39 (177)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999998854
|
| >d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Escherichia coli [TaxId: 562]
Probab=92.02 E-value=0.034 Score=56.00 Aligned_cols=22 Identities=41% Similarity=0.551 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhCC
Q 000979 644 LTALMGVSGAGKTTLMDVLAGR 665 (1202)
Q Consensus 644 ~~al~G~sGaGKSTLl~~l~g~ 665 (1202)
+++|.||+||||||+-+.|+..
T Consensus 5 iI~I~GppGSGKgT~ak~La~~ 26 (225)
T d1ckea_ 5 VITIDGPSGAGKGTLCKAMAEA 26 (225)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 8999999999999999999864
|
| >d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]
Probab=91.92 E-value=0.034 Score=54.77 Aligned_cols=22 Identities=32% Similarity=0.542 Sum_probs=19.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhCC
Q 000979 644 LTALMGVSGAGKTTLMDVLAGR 665 (1202)
Q Consensus 644 ~~al~G~sGaGKSTLl~~l~g~ 665 (1202)
.+.|+||+||||||+-+.|+-.
T Consensus 8 rIiliG~PGSGKtT~a~~La~~ 29 (189)
T d2ak3a1 8 RAAIMGAPGSGKGTVSSRITKH 29 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4678999999999999999854
|
| >d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.90 E-value=0.037 Score=55.46 Aligned_cols=25 Identities=44% Similarity=0.534 Sum_probs=22.7
Q ss_pred eCCeEEEEEcCCCCCHHHHHHHHhC
Q 000979 640 RPGVLTALMGVSGAGKTTLMDVLAG 664 (1202)
Q Consensus 640 ~~Ge~~al~G~sGaGKSTLl~~l~g 664 (1202)
+.|-+++|-|+-||||||+.+.|..
T Consensus 1 ~rG~lI~ieG~dGsGKsT~~~~L~~ 25 (209)
T d1nn5a_ 1 RRGALIVLEGVDRAGKSTQSRKLVE 25 (209)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHH
T ss_pred CCeeEEEEECCCCCCHHHHHHHHHH
Confidence 4688999999999999999999876
|
| >d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.86 E-value=0.035 Score=54.11 Aligned_cols=21 Identities=43% Similarity=0.539 Sum_probs=18.7
Q ss_pred EEEEcCCCCCHHHHHHHHhCC
Q 000979 645 TALMGVSGAGKTTLMDVLAGR 665 (1202)
Q Consensus 645 ~al~G~sGaGKSTLl~~l~g~ 665 (1202)
+.|+||.||||||+.+.|+-.
T Consensus 5 Ivl~G~pGSGKtT~a~~La~~ 25 (180)
T d1akya1 5 MVLIGPPGAGKGTQAPNLQER 25 (180)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 568899999999999999853
|
| >d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: LAO/AO transport system kinase ArgK species: Escherichia coli [TaxId: 562]
Probab=91.80 E-value=0.034 Score=59.69 Aligned_cols=24 Identities=25% Similarity=0.479 Sum_probs=21.4
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhC
Q 000979 641 PGVLTALMGVSGAGKTTLMDVLAG 664 (1202)
Q Consensus 641 ~Ge~~al~G~sGaGKSTLl~~l~g 664 (1202)
..-.+||.||+|||||||++.|..
T Consensus 53 ~~~~IgitG~pGaGKSTLi~~l~~ 76 (327)
T d2p67a1 53 NTLRLGVTGTPGAGKSTFLEAFGM 76 (327)
T ss_dssp CSEEEEEEECTTSCHHHHHHHHHH
T ss_pred CceEEEeeCCCCCCHHHHHHHHHH
Confidence 356899999999999999999975
|
| >d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL8A [TaxId: 9606]
Probab=91.72 E-value=0.034 Score=53.20 Aligned_cols=21 Identities=38% Similarity=0.623 Sum_probs=18.7
Q ss_pred EEEEcCCCCCHHHHHHHHhCC
Q 000979 645 TALMGVSGAGKTTLMDVLAGR 665 (1202)
Q Consensus 645 ~al~G~sGaGKSTLl~~l~g~ 665 (1202)
++++|++|+|||||++.+.+.
T Consensus 5 i~i~G~~~~GKTsLl~~l~~~ 25 (164)
T d1zd9a1 5 LTLVGLQYSGKTTFVNVIASG 25 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 679999999999999988763
|
| >d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.61 E-value=0.045 Score=55.81 Aligned_cols=28 Identities=36% Similarity=0.520 Sum_probs=24.9
Q ss_pred EEEeCCeEEEEEcCCCCCHHHHHHHHhC
Q 000979 637 GAFRPGVLTALMGVSGAGKTTLMDVLAG 664 (1202)
Q Consensus 637 ~~i~~Ge~~al~G~sGaGKSTLl~~l~g 664 (1202)
+-+++|+++.|.||+|||||||.--++-
T Consensus 29 GGi~~G~~~li~G~pGsGKT~l~lq~~~ 56 (251)
T d1szpa2 29 GGVETGSITELFGEFRTGKSQLCHTLAV 56 (251)
T ss_dssp SSEESSSEEEEEESTTSSHHHHHHHHTT
T ss_pred CCCcCCeEEEEEcCCCCCHHHHHHHHHH
Confidence 4699999999999999999999877653
|
| >d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric traffic ATPase, HP0525 species: Helicobacter pylori [TaxId: 210]
Probab=91.38 E-value=0.032 Score=59.89 Aligned_cols=30 Identities=23% Similarity=0.287 Sum_probs=25.3
Q ss_pred EEeCCeEEEEEcCCCCCHHHHHHHHhCCCC
Q 000979 638 AFRPGVLTALMGVSGAGKTTLMDVLAGRKT 667 (1202)
Q Consensus 638 ~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~ 667 (1202)
-++.|.-+.|.||.||||||||++|.+..+
T Consensus 162 ~v~~~~nili~G~tgSGKTT~l~al~~~i~ 191 (323)
T d1g6oa_ 162 GIAIGKNVIVCGGTGSGKTTYIKSIMEFIP 191 (323)
T ss_dssp HHHHTCCEEEEESTTSSHHHHHHHHGGGSC
T ss_pred HHHhCCCEEEEeeccccchHHHHHHhhhcc
Confidence 445667789999999999999999998654
|
| >d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL3 [TaxId: 10090]
Probab=91.21 E-value=0.044 Score=52.97 Aligned_cols=22 Identities=45% Similarity=0.682 Sum_probs=19.8
Q ss_pred EEEEcCCCCCHHHHHHHHhCCC
Q 000979 645 TALMGVSGAGKTTLMDVLAGRK 666 (1202)
Q Consensus 645 ~al~G~sGaGKSTLl~~l~g~~ 666 (1202)
++++|++|+|||||++.+.+..
T Consensus 19 I~vvG~~~vGKSsLi~~l~~~~ 40 (176)
T d1fzqa_ 19 ILLLGLDNAGKTTLLKQLASED 40 (176)
T ss_dssp EEEEESTTSSHHHHHHHHCCSC
T ss_pred EEEECCCCCCHHHHHHHHhcCC
Confidence 7899999999999999997754
|
| >d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab27b species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.20 E-value=0.093 Score=51.08 Aligned_cols=22 Identities=36% Similarity=0.466 Sum_probs=19.6
Q ss_pred EEEEcCCCCCHHHHHHHHhCCC
Q 000979 645 TALMGVSGAGKTTLMDVLAGRK 666 (1202)
Q Consensus 645 ~al~G~sGaGKSTLl~~l~g~~ 666 (1202)
++|+|++|+|||||++-+.+..
T Consensus 8 i~ivG~~~vGKTsLi~~l~~~~ 29 (186)
T d2f7sa1 8 LLALGDSGVGKTTFLYRYTDNK 29 (186)
T ss_dssp EEEESCTTSSHHHHHHHHHCSC
T ss_pred EEEECCCCcCHHHHHHHHhcCC
Confidence 7899999999999999998643
|
| >d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Escherichia coli [TaxId: 562]
Probab=91.17 E-value=0.048 Score=54.52 Aligned_cols=25 Identities=32% Similarity=0.456 Sum_probs=22.5
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCC
Q 000979 641 PGVLTALMGVSGAGKTTLMDVLAGR 665 (1202)
Q Consensus 641 ~Ge~~al~G~sGaGKSTLl~~l~g~ 665 (1202)
+|.+++|-|+.||||||+++.|+..
T Consensus 1 rgkfIviEG~dGsGKsT~~~~L~~~ 25 (210)
T d4tmka_ 1 RSKYIVIEGLEGAGKTTARNVVVET 25 (210)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
Confidence 4889999999999999999999753
|
| >d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermotoga maritima [TaxId: 2336]
Probab=91.09 E-value=0.048 Score=54.51 Aligned_cols=25 Identities=40% Similarity=0.587 Sum_probs=20.6
Q ss_pred eCCeEEEEEcCCCCCHHHHHHHHhC
Q 000979 640 RPGVLTALMGVSGAGKTTLMDVLAG 664 (1202)
Q Consensus 640 ~~Ge~~al~G~sGaGKSTLl~~l~g 664 (1202)
++-.+++++||+|+||||.+-=|+-
T Consensus 9 ~~p~vi~lvGptGvGKTTTiAKLAa 33 (213)
T d1vmaa2 9 EPPFVIMVVGVNGTGKTTSCGKLAK 33 (213)
T ss_dssp SSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3446899999999999998877764
|
| >d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=91.08 E-value=0.05 Score=55.84 Aligned_cols=27 Identities=37% Similarity=0.598 Sum_probs=23.6
Q ss_pred EEEeCCeEEEEEcCCCCCHHHHHHHHh
Q 000979 637 GAFRPGVLTALMGVSGAGKTTLMDVLA 663 (1202)
Q Consensus 637 ~~i~~Ge~~al~G~sGaGKSTLl~~l~ 663 (1202)
+-+++|+++.|.||+|||||||.--++
T Consensus 31 GGlp~G~~~li~G~pGsGKT~~~lq~~ 57 (254)
T d1pzna2 31 GGIETQAITEVFGEFGSGKTQLAHTLA 57 (254)
T ss_dssp SSEESSEEEEEEESTTSSHHHHHHHHH
T ss_pred CCccCCEEEEEEcCCCCCHHHHHHHHH
Confidence 469999999999999999999976553
|
| >d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Thermus aquaticus [TaxId: 271]
Probab=91.06 E-value=0.058 Score=53.67 Aligned_cols=24 Identities=42% Similarity=0.389 Sum_probs=20.5
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCC
Q 000979 642 GVLTALMGVSGAGKTTLMDVLAGR 665 (1202)
Q Consensus 642 Ge~~al~G~sGaGKSTLl~~l~g~ 665 (1202)
..+++++||+|+||||.+-=|+.+
T Consensus 10 ~~vi~lvGp~GvGKTTTiaKLA~~ 33 (207)
T d1ls1a2 10 RNLWFLVGLQGSGKTTTAAKLALY 33 (207)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 468899999999999998888753
|
| >d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Haemophilus influenzae [TaxId: 727]
Probab=91.04 E-value=0.05 Score=54.25 Aligned_cols=20 Identities=35% Similarity=0.657 Sum_probs=18.9
Q ss_pred EEEEEcCCCCCHHHHHHHHh
Q 000979 644 LTALMGVSGAGKTTLMDVLA 663 (1202)
Q Consensus 644 ~~al~G~sGaGKSTLl~~l~ 663 (1202)
++||.|+.||||||+.+++.
T Consensus 4 iIgITG~igSGKStv~~~l~ 23 (205)
T d1jjva_ 4 IVGLTGGIGSGKTTIANLFT 23 (205)
T ss_dssp EEEEECSTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 68999999999999999995
|
| >d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxycytidine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.90 E-value=0.04 Score=56.20 Aligned_cols=26 Identities=23% Similarity=0.231 Sum_probs=23.1
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCC
Q 000979 641 PGVLTALMGVSGAGKTTLMDVLAGRK 666 (1202)
Q Consensus 641 ~Ge~~al~G~sGaGKSTLl~~l~g~~ 666 (1202)
++.+++|-|+-||||||+++.|+...
T Consensus 1 ~~k~I~ieG~dGsGKST~~~~L~~~l 26 (241)
T d1p5zb_ 1 RIKKISIEGNIAAGKSTFVNILKQLC 26 (241)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGGC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 36789999999999999999998754
|
| >d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=90.89 E-value=0.046 Score=52.54 Aligned_cols=20 Identities=30% Similarity=0.421 Sum_probs=18.5
Q ss_pred EEEEcCCCCCHHHHHHHHhC
Q 000979 645 TALMGVSGAGKTTLMDVLAG 664 (1202)
Q Consensus 645 ~al~G~sGaGKSTLl~~l~g 664 (1202)
++++|++|+|||||++.+.+
T Consensus 8 i~vvG~~~vGKTsLi~~l~~ 27 (169)
T d3raba_ 8 ILIIGNSSVGKTSFLFRYAD 27 (169)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHc
Confidence 78999999999999998875
|
| >d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Pantothenate kinase PanK species: Escherichia coli [TaxId: 562]
Probab=90.84 E-value=0.05 Score=57.63 Aligned_cols=22 Identities=27% Similarity=0.419 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhCC
Q 000979 644 LTALMGVSGAGKTTLMDVLAGR 665 (1202)
Q Consensus 644 ~~al~G~sGaGKSTLl~~l~g~ 665 (1202)
++||-|++||||||+.+.|...
T Consensus 82 iIGIaG~sgSGKSTla~~L~~l 103 (308)
T d1sq5a_ 82 IISIAGSVAVGKSTTARVLQAL 103 (308)
T ss_dssp EEEEEECTTSSHHHHHHHHHHH
T ss_pred EEEEeCCCCCCCcHHHHHHHHH
Confidence 8999999999999999998653
|
| >d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-inducible GTPase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=90.77 E-value=0.047 Score=60.55 Aligned_cols=22 Identities=32% Similarity=0.659 Sum_probs=20.5
Q ss_pred EEEEcCCCCCHHHHHHHHhCCC
Q 000979 645 TALMGVSGAGKTTLMDVLAGRK 666 (1202)
Q Consensus 645 ~al~G~sGaGKSTLl~~l~g~~ 666 (1202)
+||+|.+|+|||||+|.|.|..
T Consensus 59 Iai~G~~n~GKSSLiNaL~G~~ 80 (400)
T d1tq4a_ 59 VAVTGETGSGKSSFINTLRGIG 80 (400)
T ss_dssp EEEEECTTSSHHHHHHHHHTCC
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 8999999999999999999953
|
| >d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein ypt7p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.76 E-value=0.047 Score=52.67 Aligned_cols=21 Identities=38% Similarity=0.605 Sum_probs=19.0
Q ss_pred EEEEcCCCCCHHHHHHHHhCC
Q 000979 645 TALMGVSGAGKTTLMDVLAGR 665 (1202)
Q Consensus 645 ~al~G~sGaGKSTLl~~l~g~ 665 (1202)
++|+|++|+|||||++.+.+.
T Consensus 5 i~~vG~~~vGKSsLi~~~~~~ 25 (175)
T d1ky3a_ 5 VIILGDSGVGKTSLMHRYVND 25 (175)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHcC
Confidence 789999999999999998763
|
| >d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.76 E-value=0.057 Score=55.53 Aligned_cols=23 Identities=35% Similarity=0.437 Sum_probs=20.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCC
Q 000979 644 LTALMGVSGAGKTTLMDVLAGRK 666 (1202)
Q Consensus 644 ~~al~G~sGaGKSTLl~~l~g~~ 666 (1202)
.+.|.||+|+||||+.++|+...
T Consensus 54 ~lll~GPpG~GKTt~a~~la~~~ 76 (253)
T d1sxja2 54 AAMLYGPPGIGKTTAAHLVAQEL 76 (253)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 57899999999999999999754
|
| >d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: cH-p21 Ras protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.66 E-value=0.047 Score=52.26 Aligned_cols=21 Identities=29% Similarity=0.453 Sum_probs=19.1
Q ss_pred EEEEcCCCCCHHHHHHHHhCC
Q 000979 645 TALMGVSGAGKTTLMDVLAGR 665 (1202)
Q Consensus 645 ~al~G~sGaGKSTLl~~l~g~ 665 (1202)
++++|++|+|||||++.+.+.
T Consensus 6 i~viG~~~vGKTsli~~l~~~ 26 (166)
T d1ctqa_ 6 LVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEESTTSSHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 799999999999999988763
|
| >d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Metallochaperone MeaB species: Methylobacterium extorquens [TaxId: 408]
Probab=90.62 E-value=0.055 Score=57.92 Aligned_cols=23 Identities=35% Similarity=0.666 Sum_probs=20.8
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhC
Q 000979 642 GVLTALMGVSGAGKTTLMDVLAG 664 (1202)
Q Consensus 642 Ge~~al~G~sGaGKSTLl~~l~g 664 (1202)
.-.++|.||+|||||||++.|..
T Consensus 51 ~~~igitG~pGaGKSTli~~l~~ 73 (323)
T d2qm8a1 51 AIRVGITGVPGVGKSTTIDALGS 73 (323)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEeeeCCCCCCHHHHHHHHHH
Confidence 45799999999999999999975
|
| >d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Mycoplasma pneumoniae [TaxId: 2104]
Probab=90.62 E-value=0.11 Score=49.82 Aligned_cols=34 Identities=32% Similarity=0.305 Sum_probs=26.7
Q ss_pred EeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCC
Q 000979 631 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGR 665 (1202)
Q Consensus 631 iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~ 665 (1202)
.++.....+ .|.=+.|.||||+|||||.-.|..+
T Consensus 5 ~~H~~~v~~-~g~gvli~G~sG~GKS~lal~l~~~ 38 (177)
T d1knxa2 5 QIHGVLLEV-FGVGVLLTGRSGIGKSECALDLINK 38 (177)
T ss_dssp EEEEEEEEE-TTEEEEEEESSSSSHHHHHHHHHTT
T ss_pred eEEEEEEEE-CCEEEEEEcCCCCCHHHHHHHHHHc
Confidence 356555555 7889999999999999998777543
|
| >d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=90.60 E-value=0.054 Score=55.01 Aligned_cols=21 Identities=38% Similarity=0.406 Sum_probs=19.2
Q ss_pred EEEEcCCCCCHHHHHHHHhCC
Q 000979 645 TALMGVSGAGKTTLMDVLAGR 665 (1202)
Q Consensus 645 ~al~G~sGaGKSTLl~~l~g~ 665 (1202)
+.|.||+|+||||+.++|+..
T Consensus 48 lll~Gp~G~GKTtla~~iak~ 68 (231)
T d1iqpa2 48 LLFAGPPGVGKTTAALALARE 68 (231)
T ss_dssp EEEESCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHH
Confidence 789999999999999999864
|
| >d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Phosphoribulokinase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=90.56 E-value=0.035 Score=58.04 Aligned_cols=21 Identities=29% Similarity=0.532 Sum_probs=16.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhC
Q 000979 644 LTALMGVSGAGKTTLMDVLAG 664 (1202)
Q Consensus 644 ~~al~G~sGaGKSTLl~~l~g 664 (1202)
++||.|+|||||||+.+.|..
T Consensus 6 IIgIaG~SGSGKTTva~~l~~ 26 (288)
T d1a7ja_ 6 IISVTGSSGAGTSTVKHTFDQ 26 (288)
T ss_dssp EEEEESCC---CCTHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHH
Confidence 899999999999999999864
|
| >d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=90.34 E-value=0.055 Score=57.76 Aligned_cols=23 Identities=30% Similarity=0.391 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCC
Q 000979 643 VLTALMGVSGAGKTTLMDVLAGR 665 (1202)
Q Consensus 643 e~~al~G~sGaGKSTLl~~l~g~ 665 (1202)
.-+.++||+|+|||+|.|+|+..
T Consensus 50 ~~iLl~GPpG~GKT~lAkalA~~ 72 (309)
T d1ofha_ 50 KNILMIGPTGVGKTEIARRLAKL 72 (309)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHhhc
Confidence 45668999999999999999974
|
| >d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Escherichia coli [TaxId: 562]
Probab=90.33 E-value=0.061 Score=53.55 Aligned_cols=23 Identities=39% Similarity=0.629 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCC
Q 000979 643 VLTALMGVSGAGKTTLMDVLAGR 665 (1202)
Q Consensus 643 e~~al~G~sGaGKSTLl~~l~g~ 665 (1202)
.+++++||+|+||||.+-=|+-+
T Consensus 10 ~vi~lvGptGvGKTTTiAKLA~~ 32 (211)
T d2qy9a2 10 FVILMVGVNGVGKTTTIGKLARQ 32 (211)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHH
Confidence 58999999999999988777743
|
| >d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab23 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=90.30 E-value=0.056 Score=51.59 Aligned_cols=20 Identities=15% Similarity=0.413 Sum_probs=18.0
Q ss_pred EEEEcCCCCCHHHHHHHHhC
Q 000979 645 TALMGVSGAGKTTLMDVLAG 664 (1202)
Q Consensus 645 ~al~G~sGaGKSTLl~~l~g 664 (1202)
++++|++|+|||||++-+.+
T Consensus 5 v~liG~~~vGKSsLi~rl~~ 24 (164)
T d1z2aa1 5 MVVVGNGAVGKSSMIQRYCK 24 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 78999999999999997764
|
| >d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermotoga maritima [TaxId: 2336]
Probab=90.29 E-value=0.059 Score=54.92 Aligned_cols=23 Identities=39% Similarity=0.527 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCC
Q 000979 644 LTALMGVSGAGKTTLMDVLAGRK 666 (1202)
Q Consensus 644 ~~al~G~sGaGKSTLl~~l~g~~ 666 (1202)
.+.+.||+|+||||+.++|+...
T Consensus 37 ~~L~~GPpGtGKT~lA~~la~~~ 59 (238)
T d1in4a2 37 HVLLAGPPGLGKTTLAHIIASEL 59 (238)
T ss_dssp CEEEESSTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHhcc
Confidence 36799999999999999998643
|
| >d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.28 E-value=0.066 Score=53.75 Aligned_cols=26 Identities=31% Similarity=0.442 Sum_probs=23.4
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCC
Q 000979 641 PGVLTALMGVSGAGKTTLMDVLAGRK 666 (1202)
Q Consensus 641 ~Ge~~al~G~sGaGKSTLl~~l~g~~ 666 (1202)
+|.+++|=|+-||||||+.+.|+-..
T Consensus 2 kGk~I~iEG~DGsGKST~~~~L~~~L 27 (214)
T d1tmka_ 2 RGKLILIEGLDRTGKTTQCNILYKKL 27 (214)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CeEEEEEECCCCCcHHHHHHHHHHHH
Confidence 68999999999999999999997643
|
| >d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab11b species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.24 E-value=0.057 Score=52.21 Aligned_cols=20 Identities=35% Similarity=0.632 Sum_probs=18.4
Q ss_pred EEEEcCCCCCHHHHHHHHhC
Q 000979 645 TALMGVSGAGKTTLMDVLAG 664 (1202)
Q Consensus 645 ~al~G~sGaGKSTLl~~l~g 664 (1202)
++++|++|+|||||++.+.+
T Consensus 7 i~vvG~~~vGKTsLi~~~~~ 26 (175)
T d2f9la1 7 VVLIGDSGVGKSNLLSRFTR 26 (175)
T ss_dssp EEEESSTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 78999999999999998765
|
| >d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CED-4, NB-ARC domain species: Caenorhabditis elegans [TaxId: 6239]
Probab=90.24 E-value=1.7 Score=44.72 Aligned_cols=23 Identities=22% Similarity=0.369 Sum_probs=20.5
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhC
Q 000979 642 GVLTALMGVSGAGKTTLMDVLAG 664 (1202)
Q Consensus 642 Ge~~al~G~sGaGKSTLl~~l~g 664 (1202)
..+++|.|..|.|||||.+.+..
T Consensus 44 ~~~v~I~GmgGiGKTtLA~~v~~ 66 (277)
T d2a5yb3 44 SFFLFLHGRAGSGKSVIASQALS 66 (277)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999998853
|
| >d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Archaeal ATPase SSO1545 species: Sulfolobus solfataricus [TaxId: 2287]
Probab=90.15 E-value=0.065 Score=55.58 Aligned_cols=25 Identities=16% Similarity=0.422 Sum_probs=21.5
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCC
Q 000979 641 PGVLTALMGVSGAGKTTLMDVLAGR 665 (1202)
Q Consensus 641 ~Ge~~al~G~sGaGKSTLl~~l~g~ 665 (1202)
.+..+.|.||+|+|||||++.++..
T Consensus 28 ~~~~i~i~G~~G~GKTsLl~~~~~~ 52 (283)
T d2fnaa2 28 RAPITLVLGLRRTGKSSIIKIGINE 52 (283)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHH
T ss_pred cCCEEEEEcCCCCcHHHHHHHHHHH
Confidence 4568999999999999999988643
|
| >d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor IF2/eIF5b, N-terminal (G) domain species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=90.14 E-value=0.061 Score=54.58 Aligned_cols=22 Identities=36% Similarity=0.671 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhCC
Q 000979 644 LTALMGVSGAGKTTLMDVLAGR 665 (1202)
Q Consensus 644 ~~al~G~sGaGKSTLl~~l~g~ 665 (1202)
++||+|...||||||++.|.+.
T Consensus 7 ~IaIiGh~d~GKSTL~~~L~~~ 28 (227)
T d1g7sa4 7 IVSVLGHVDHGKTTLLDHIRGS 28 (227)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEeCCCccHHHHHHHHHhh
Confidence 5999999999999999999873
|
| >d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=90.11 E-value=0.079 Score=53.95 Aligned_cols=29 Identities=31% Similarity=0.486 Sum_probs=25.3
Q ss_pred eEEEeCCeEEEEEcCCCCCHHHHHHHHhC
Q 000979 636 SGAFRPGVLTALMGVSGAGKTTLMDVLAG 664 (1202)
Q Consensus 636 s~~i~~Ge~~al~G~sGaGKSTLl~~l~g 664 (1202)
.+-+++|+++.|.|++|+||||+.--++-
T Consensus 28 ~GGl~~G~l~~i~G~~G~GKT~~~l~~a~ 56 (258)
T d2i1qa2 28 GGGLESQSVTEFAGVFGSGKTQIMHQSCV 56 (258)
T ss_dssp TSSEETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCCccCCeEEEEEeCCCCCHHHHHHHHHH
Confidence 34699999999999999999999877753
|
| >d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Archaeon Acidianus ambivalens [TaxId: 2283]
Probab=89.91 E-value=0.071 Score=53.10 Aligned_cols=24 Identities=38% Similarity=0.416 Sum_probs=16.1
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhC
Q 000979 641 PGVLTALMGVSGAGKTTLMDVLAG 664 (1202)
Q Consensus 641 ~Ge~~al~G~sGaGKSTLl~~l~g 664 (1202)
...+++++||+|+||||.+-=|+-
T Consensus 11 ~p~vi~lvGptGvGKTTTiAKLA~ 34 (211)
T d1j8yf2 11 IPYVIMLVGVQGTGKATTAGKLAY 34 (211)
T ss_dssp SSEEEEEECSCCC----HHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999998877764
|
| >d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein RheB species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.83 E-value=0.061 Score=51.46 Aligned_cols=21 Identities=24% Similarity=0.371 Sum_probs=18.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhC
Q 000979 644 LTALMGVSGAGKTTLMDVLAG 664 (1202)
Q Consensus 644 ~~al~G~sGaGKSTLl~~l~g 664 (1202)
-++|+|++|+|||||++.+.+
T Consensus 6 Kv~liG~~~vGKTsLl~~~~~ 26 (167)
T d1xtqa1 6 KIAILGYRSVGKSSLTIQFVE 26 (167)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 478999999999999999865
|
| >d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: di-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.76 E-value=0.075 Score=50.99 Aligned_cols=20 Identities=30% Similarity=0.551 Sum_probs=18.4
Q ss_pred EEEEcCCCCCHHHHHHHHhC
Q 000979 645 TALMGVSGAGKTTLMDVLAG 664 (1202)
Q Consensus 645 ~al~G~sGaGKSTLl~~l~g 664 (1202)
++|+|.+|+|||||++-+.+
T Consensus 5 i~viG~~~vGKTsLi~r~~~ 24 (171)
T d2erxa1 5 VAVFGAGGVGKSSLVLRFVK 24 (171)
T ss_dssp EEEECCTTSSHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 68999999999999998876
|
| >d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rad species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.73 E-value=0.076 Score=50.90 Aligned_cols=22 Identities=32% Similarity=0.693 Sum_probs=19.5
Q ss_pred EEEEcCCCCCHHHHHHHHhCCC
Q 000979 645 TALMGVSGAGKTTLMDVLAGRK 666 (1202)
Q Consensus 645 ~al~G~sGaGKSTLl~~l~g~~ 666 (1202)
++|+|++|+|||||++.+.+..
T Consensus 4 i~lvG~~~vGKTsLi~~~~~~~ 25 (168)
T d2gjsa1 4 VLLLGAPGVGKSALARIFGGVE 25 (168)
T ss_dssp EEEECCTTSSHHHHHHHHHTC-
T ss_pred EEEECCCCcCHHHHHHHHhCCc
Confidence 6899999999999999998853
|
| >d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein Sec4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=89.70 E-value=0.063 Score=51.27 Aligned_cols=21 Identities=33% Similarity=0.493 Sum_probs=18.8
Q ss_pred EEEEcCCCCCHHHHHHHHhCC
Q 000979 645 TALMGVSGAGKTTLMDVLAGR 665 (1202)
Q Consensus 645 ~al~G~sGaGKSTLl~~l~g~ 665 (1202)
++++|++|+|||||++.+.+.
T Consensus 5 i~vvG~~~vGKTSli~~l~~~ 25 (166)
T d1g16a_ 5 ILLIGDSGVGKSCLLVRFVED 25 (166)
T ss_dssp EEEEESTTSSHHHHHHHHHHC
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 689999999999999988763
|
| >d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Escherichia coli [TaxId: 562]
Probab=89.68 E-value=0.076 Score=52.99 Aligned_cols=20 Identities=40% Similarity=0.657 Sum_probs=18.9
Q ss_pred EEEEEcCCCCCHHHHHHHHh
Q 000979 644 LTALMGVSGAGKTTLMDVLA 663 (1202)
Q Consensus 644 ~~al~G~sGaGKSTLl~~l~ 663 (1202)
++||.|+.||||||..+++.
T Consensus 5 iIgitG~igSGKStv~~~l~ 24 (208)
T d1vhta_ 5 IVALTGGIGSGKSTVANAFA 24 (208)
T ss_dssp EEEEECCTTSCHHHHHHHHH
T ss_pred EEEEECCCcCCHHHHHHHHH
Confidence 78999999999999999996
|
| >d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermus thermophilus [TaxId: 274]
Probab=89.62 E-value=0.064 Score=54.71 Aligned_cols=21 Identities=48% Similarity=0.632 Sum_probs=19.1
Q ss_pred EEEEcCCCCCHHHHHHHHhCC
Q 000979 645 TALMGVSGAGKTTLMDVLAGR 665 (1202)
Q Consensus 645 ~al~G~sGaGKSTLl~~l~g~ 665 (1202)
+.+.||+|+||||+.+++++.
T Consensus 38 ~Ll~GPpG~GKTtla~~la~~ 58 (239)
T d1ixsb2 38 LLLFGPPGLGKTTLAHVIAHE 58 (239)
T ss_dssp EEEECCTTSCHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 568999999999999999874
|
| >d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: YjeE-like domain: Hypothetical protein HI0065 species: Haemophilus influenzae [TaxId: 727]
Probab=89.54 E-value=0.098 Score=49.27 Aligned_cols=27 Identities=33% Similarity=0.354 Sum_probs=24.4
Q ss_pred EEeCCeEEEEEcCCCCCHHHHHHHHhC
Q 000979 638 AFRPGVLTALMGVSGAGKTTLMDVLAG 664 (1202)
Q Consensus 638 ~i~~Ge~~al~G~sGaGKSTLl~~l~g 664 (1202)
..+||.+++|-|+=||||||+.|.++.
T Consensus 29 ~~~~g~ii~L~G~LGaGKTtfvr~~~~ 55 (158)
T d1htwa_ 29 HTEKAIMVYLNGDLGAGKTTLTRGMLQ 55 (158)
T ss_dssp CCSSCEEEEEECSTTSSHHHHHHHHHH
T ss_pred cCCCCeEEEEecCCCccHHHHHHHHHh
Confidence 347999999999999999999999975
|
| >d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]
Probab=89.51 E-value=0.06 Score=52.36 Aligned_cols=21 Identities=38% Similarity=0.566 Sum_probs=18.7
Q ss_pred EEEEcCCCCCHHHHHHHHhCC
Q 000979 645 TALMGVSGAGKTTLMDVLAGR 665 (1202)
Q Consensus 645 ~al~G~sGaGKSTLl~~l~g~ 665 (1202)
++++|++|+|||||++-+.+.
T Consensus 20 I~lvG~~~vGKTsLi~~l~~~ 40 (182)
T d1moza_ 20 ILILGLDGAGKTTILYRLQIG 40 (182)
T ss_dssp EEEEEETTSSHHHHHHHTCCS
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 679999999999999998653
|
| >d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Meiotic recombination protein DMC1/LIM15 homolog species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.51 E-value=0.087 Score=53.91 Aligned_cols=27 Identities=30% Similarity=0.402 Sum_probs=24.5
Q ss_pred EEEeCCeEEEEEcCCCCCHHHHHHHHh
Q 000979 637 GAFRPGVLTALMGVSGAGKTTLMDVLA 663 (1202)
Q Consensus 637 ~~i~~Ge~~al~G~sGaGKSTLl~~l~ 663 (1202)
+-+++|+++.|.||+||||||+.--++
T Consensus 32 GGip~G~~~~i~G~~GsGKT~lalq~~ 58 (258)
T d1v5wa_ 32 GGIESMAITEAFGEFRTGKTQLSHTLC 58 (258)
T ss_dssp SSBCSSEEEEEECCTTCTHHHHHHHHH
T ss_pred CCCcCCEEEEEECCCCCCHHHHHHHHH
Confidence 469999999999999999999987775
|
| >d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab2b species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.49 E-value=0.071 Score=51.37 Aligned_cols=21 Identities=24% Similarity=0.509 Sum_probs=18.7
Q ss_pred EEEEcCCCCCHHHHHHHHhCC
Q 000979 645 TALMGVSGAGKTTLMDVLAGR 665 (1202)
Q Consensus 645 ~al~G~sGaGKSTLl~~l~g~ 665 (1202)
++++|++|+|||||++-+.+.
T Consensus 6 ivvvG~~~vGKTsli~r~~~~ 26 (173)
T d2a5ja1 6 YIIIGDTGVGKSCLLLQFTDK 26 (173)
T ss_dssp EEEESSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHhcC
Confidence 779999999999999987753
|
| >d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=89.35 E-value=0.071 Score=54.78 Aligned_cols=22 Identities=32% Similarity=0.344 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhCC
Q 000979 644 LTALMGVSGAGKTTLMDVLAGR 665 (1202)
Q Consensus 644 ~~al~G~sGaGKSTLl~~l~g~ 665 (1202)
-+.|.||+|+|||++.+.|+..
T Consensus 42 ~vLL~GppGtGKT~la~alA~~ 63 (246)
T d1d2na_ 42 SVLLEGPPHSGKTALAAKIAEE 63 (246)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHhhc
Confidence 4789999999999999999864
|
| >d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.29 E-value=0.07 Score=51.25 Aligned_cols=21 Identities=24% Similarity=0.328 Sum_probs=18.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhC
Q 000979 644 LTALMGVSGAGKTTLMDVLAG 664 (1202)
Q Consensus 644 ~~al~G~sGaGKSTLl~~l~g 664 (1202)
-++|+|.+|+|||||++-+.+
T Consensus 7 Ki~lvG~~~vGKTsLi~r~~~ 27 (171)
T d2erya1 7 RLVVVGGGGVGKSALTIQFIQ 27 (171)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 389999999999999998765
|
| >d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.24 E-value=0.072 Score=51.19 Aligned_cols=20 Identities=35% Similarity=0.582 Sum_probs=18.7
Q ss_pred EEEEcCCCCCHHHHHHHHhC
Q 000979 645 TALMGVSGAGKTTLMDVLAG 664 (1202)
Q Consensus 645 ~al~G~sGaGKSTLl~~l~g 664 (1202)
++|+|++|+|||||++.+.+
T Consensus 8 i~lvG~~~vGKTsLi~~l~~ 27 (171)
T d2ew1a1 8 IVLIGNAGVGKTCLVRRFTQ 27 (171)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 78999999999999999876
|
| >d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C2 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=89.21 E-value=0.081 Score=53.69 Aligned_cols=21 Identities=29% Similarity=0.436 Sum_probs=19.1
Q ss_pred EEEEcCCCCCHHHHHHHHhCC
Q 000979 645 TALMGVSGAGKTTLMDVLAGR 665 (1202)
Q Consensus 645 ~al~G~sGaGKSTLl~~l~g~ 665 (1202)
+.|.||+|+||||++++++..
T Consensus 36 lll~Gp~G~GKTtl~~~i~~~ 56 (237)
T d1sxjd2 36 MLFYGPPGTGKTSTILALTKE 56 (237)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCChHHHHHHHHHH
Confidence 679999999999999999864
|
| >d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab9a species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.17 E-value=0.088 Score=50.67 Aligned_cols=20 Identities=35% Similarity=0.619 Sum_probs=18.0
Q ss_pred EEEEcCCCCCHHHHHHHHhC
Q 000979 645 TALMGVSGAGKTTLMDVLAG 664 (1202)
Q Consensus 645 ~al~G~sGaGKSTLl~~l~g 664 (1202)
++++|++|+|||||++-+.+
T Consensus 9 I~vvG~~~vGKSSli~~~~~ 28 (174)
T d1wmsa_ 9 VILLGDGGVGKSSLMNRYVT 28 (174)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 78999999999999987765
|
| >d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap2a species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.95 E-value=0.081 Score=50.52 Aligned_cols=21 Identities=24% Similarity=0.450 Sum_probs=19.1
Q ss_pred EEEEcCCCCCHHHHHHHHhCC
Q 000979 645 TALMGVSGAGKTTLMDVLAGR 665 (1202)
Q Consensus 645 ~al~G~sGaGKSTLl~~l~g~ 665 (1202)
++|+|++|+|||||++-+.+.
T Consensus 6 i~lvG~~~vGKTsLi~r~~~~ 26 (167)
T d1kaoa_ 6 VVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 789999999999999998764
|
| >d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab7 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=88.85 E-value=0.082 Score=51.43 Aligned_cols=20 Identities=40% Similarity=0.679 Sum_probs=18.4
Q ss_pred EEEEcCCCCCHHHHHHHHhC
Q 000979 645 TALMGVSGAGKTTLMDVLAG 664 (1202)
Q Consensus 645 ~al~G~sGaGKSTLl~~l~g 664 (1202)
++++|.+|+|||||++-+.+
T Consensus 5 v~vvG~~~vGKSSLi~~l~~ 24 (184)
T d1vg8a_ 5 VIILGDSGVGKTSLMNQYVN 24 (184)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 78999999999999998875
|
| >d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab14 species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.56 E-value=0.09 Score=50.15 Aligned_cols=20 Identities=25% Similarity=0.499 Sum_probs=18.3
Q ss_pred EEEEcCCCCCHHHHHHHHhC
Q 000979 645 TALMGVSGAGKTTLMDVLAG 664 (1202)
Q Consensus 645 ~al~G~sGaGKSTLl~~l~g 664 (1202)
++|+|++|+|||||++-+.+
T Consensus 7 ivlvG~~~vGKTsli~~~~~ 26 (166)
T d1z0fa1 7 YIIIGDMGVGKSCLLHQFTE 26 (166)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 78999999999999988875
|
| >d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein GEM species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.56 E-value=0.1 Score=50.14 Aligned_cols=21 Identities=43% Similarity=0.787 Sum_probs=19.3
Q ss_pred EEEEcCCCCCHHHHHHHHhCC
Q 000979 645 TALMGVSGAGKTTLMDVLAGR 665 (1202)
Q Consensus 645 ~al~G~sGaGKSTLl~~l~g~ 665 (1202)
+.++|.+|+|||||++.+.+.
T Consensus 6 v~lvG~~~vGKTsLi~~~~~~ 26 (172)
T d2g3ya1 6 VVLIGEQGVGKSTLANIFAGV 26 (172)
T ss_dssp EEEECCTTSSHHHHHHHHHCC
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 689999999999999999874
|
| >d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.52 E-value=0.086 Score=50.11 Aligned_cols=21 Identities=24% Similarity=0.387 Sum_probs=18.9
Q ss_pred EEEEcCCCCCHHHHHHHHhCC
Q 000979 645 TALMGVSGAGKTTLMDVLAGR 665 (1202)
Q Consensus 645 ~al~G~sGaGKSTLl~~l~g~ 665 (1202)
++|+|.+|+|||||++-+.+.
T Consensus 3 v~vvG~~~vGKTsLi~r~~~~ 23 (164)
T d1yzqa1 3 LVFLGEQSVGKTSLITRFMYD 23 (164)
T ss_dssp EEEEESTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 789999999999999998763
|
| >d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-33b species: Mouse (Mus musculus) [TaxId: 10090]
Probab=88.45 E-value=0.092 Score=49.93 Aligned_cols=20 Identities=30% Similarity=0.380 Sum_probs=18.3
Q ss_pred EEEEcCCCCCHHHHHHHHhC
Q 000979 645 TALMGVSGAGKTTLMDVLAG 664 (1202)
Q Consensus 645 ~al~G~sGaGKSTLl~~l~g 664 (1202)
++++|+.|+|||||++-+.+
T Consensus 5 v~liG~~~vGKTsLl~~~~~ 24 (165)
T d1z06a1 5 IIVIGDSNVGKTCLTYRFCA 24 (165)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 78999999999999998875
|
| >d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF6 [TaxId: 9606]
Probab=88.33 E-value=0.084 Score=50.79 Aligned_cols=22 Identities=32% Similarity=0.474 Sum_probs=19.4
Q ss_pred EEEEcCCCCCHHHHHHHHhCCC
Q 000979 645 TALMGVSGAGKTTLMDVLAGRK 666 (1202)
Q Consensus 645 ~al~G~sGaGKSTLl~~l~g~~ 666 (1202)
+.++|++|+|||||++.+.+..
T Consensus 15 IvlvG~~~vGKTSli~rl~~~~ 36 (173)
T d1e0sa_ 15 ILMLGLDAAGKTTILYKLKLGQ 36 (173)
T ss_dssp EEEEEETTSSHHHHHHHTTCCC
T ss_pred EEEECCCCCCHHHHHHHHhcCC
Confidence 6799999999999999997643
|
| >d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab18 species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.25 E-value=0.096 Score=50.57 Aligned_cols=20 Identities=30% Similarity=0.557 Sum_probs=18.6
Q ss_pred EEEEcCCCCCHHHHHHHHhC
Q 000979 645 TALMGVSGAGKTTLMDVLAG 664 (1202)
Q Consensus 645 ~al~G~sGaGKSTLl~~l~g 664 (1202)
++++|..|+|||||++.+.+
T Consensus 10 i~vvG~~~vGKTsli~~l~~ 29 (177)
T d1x3sa1 10 ILIIGESGVGKSSLLLRFTD 29 (177)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 78999999999999998876
|
| >d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Centaurin gamma 1, G domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.17 E-value=0.21 Score=48.01 Aligned_cols=21 Identities=19% Similarity=0.381 Sum_probs=18.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhC
Q 000979 644 LTALMGVSGAGKTTLMDVLAG 664 (1202)
Q Consensus 644 ~~al~G~sGaGKSTLl~~l~g 664 (1202)
-++++|++|+|||||++-+.+
T Consensus 7 ki~vlG~~~vGKTsLi~~~~~ 27 (175)
T d2bmja1 7 RLGVLGDARSGKSSLIHRFLT 27 (175)
T ss_dssp EEEEECCTTTTHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 478999999999999997766
|
| >d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Ytp1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=88.12 E-value=0.093 Score=51.59 Aligned_cols=20 Identities=35% Similarity=0.536 Sum_probs=18.5
Q ss_pred EEEEcCCCCCHHHHHHHHhC
Q 000979 645 TALMGVSGAGKTTLMDVLAG 664 (1202)
Q Consensus 645 ~al~G~sGaGKSTLl~~l~g 664 (1202)
++|+|+.|+|||||++.+.+
T Consensus 9 ivvvG~~~vGKTsli~~l~~ 28 (194)
T d2bcgy1 9 LLLIGNSGVGKSCLLLRFSD 28 (194)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHhh
Confidence 88999999999999998775
|
| >d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Lactobacillus casei [TaxId: 1582]
Probab=88.12 E-value=0.19 Score=48.18 Aligned_cols=33 Identities=30% Similarity=0.312 Sum_probs=24.9
Q ss_pred eecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCC
Q 000979 632 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGR 665 (1202)
Q Consensus 632 L~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~ 665 (1202)
|+... -.-.|.=+.|.|+||+|||||.-.|..+
T Consensus 5 lH~~~-v~~~g~gvl~~G~sG~GKStlal~l~~~ 37 (176)
T d1kkma_ 5 MHGVL-VDIYGLGVLITGDSGVGKSETALELVQR 37 (176)
T ss_dssp EEEEE-EEETTEEEEEECCTTSCHHHHHHHHHHT
T ss_pred EEEEE-EEECCEEEEEEeCCCCCHHHHHHHHHHc
Confidence 44433 3456788999999999999998777643
|
| >d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-22a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=87.98 E-value=0.1 Score=49.78 Aligned_cols=20 Identities=30% Similarity=0.554 Sum_probs=18.5
Q ss_pred EEEEcCCCCCHHHHHHHHhC
Q 000979 645 TALMGVSGAGKTTLMDVLAG 664 (1202)
Q Consensus 645 ~al~G~sGaGKSTLl~~l~g 664 (1202)
++|+|.+|+|||||++-+.+
T Consensus 7 i~lvG~~~vGKTsli~rl~~ 26 (167)
T d1z0ja1 7 VCLLGDTGVGKSSIMWRFVE 26 (167)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 78999999999999999875
|
| >d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Thermus thermophilus [TaxId: 274]
Probab=87.97 E-value=0.099 Score=53.64 Aligned_cols=22 Identities=41% Similarity=0.640 Sum_probs=19.9
Q ss_pred EEEEcCCCCCHHHHHHHHhCCC
Q 000979 645 TALMGVSGAGKTTLMDVLAGRK 666 (1202)
Q Consensus 645 ~al~G~sGaGKSTLl~~l~g~~ 666 (1202)
+.+.||+|+|||+|.+.|++..
T Consensus 45 iLl~GppGtGKT~la~aia~~~ 66 (247)
T d1ixza_ 45 VLLVGPPGVGKTHLARAVAGEA 66 (247)
T ss_dssp EEEECCTTSSHHHHHHHHHHHT
T ss_pred EEEecCCCCChhHHHHHHHHHc
Confidence 6899999999999999999643
|
| >d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein Ygr205W species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=87.92 E-value=0.12 Score=53.94 Aligned_cols=20 Identities=20% Similarity=0.237 Sum_probs=18.4
Q ss_pred EEEEEcCCCCCHHHHHHHHh
Q 000979 644 LTALMGVSGAGKTTLMDVLA 663 (1202)
Q Consensus 644 ~~al~G~sGaGKSTLl~~l~ 663 (1202)
++||-|+.|||||||-+.|.
T Consensus 29 iIGi~G~qGSGKSTl~~~l~ 48 (286)
T d1odfa_ 29 FIFFSGPQGSGKSFTSIQIY 48 (286)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEeECCCCCCHHHHHHHHH
Confidence 88999999999999998874
|
| >d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=87.90 E-value=0.1 Score=54.25 Aligned_cols=27 Identities=30% Similarity=0.405 Sum_probs=22.5
Q ss_pred eCCeEEEEEcCCCCCHHHHHHHHhCCC
Q 000979 640 RPGVLTALMGVSGAGKTTLMDVLAGRK 666 (1202)
Q Consensus 640 ~~Ge~~al~G~sGaGKSTLl~~l~g~~ 666 (1202)
++..-+.|.||+|+|||+|.+.|++..
T Consensus 39 ~~~~giLL~Gp~GtGKT~l~~ala~~~ 65 (265)
T d1r7ra3 39 TPSKGVLFYGPPGCGKTLLAKAIANEC 65 (265)
T ss_dssp CCCCEEEEBCCTTSSHHHHHHHHHHHT
T ss_pred CCCCeEEEECCCCCcchhHHHHHHHHh
Confidence 344458899999999999999999754
|
| >d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoA species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.77 E-value=0.1 Score=50.35 Aligned_cols=22 Identities=27% Similarity=0.321 Sum_probs=19.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhCC
Q 000979 644 LTALMGVSGAGKTTLMDVLAGR 665 (1202)
Q Consensus 644 ~~al~G~sGaGKSTLl~~l~g~ 665 (1202)
-+.|+|++|+|||||++.+.+.
T Consensus 4 KivvvG~~~vGKTsLi~~~~~~ 25 (177)
T d1kmqa_ 4 KLVIVGDGACGKTCLLIVNSKD 25 (177)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 3679999999999999998763
|
| >d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab21 species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.76 E-value=0.11 Score=49.65 Aligned_cols=20 Identities=30% Similarity=0.388 Sum_probs=18.2
Q ss_pred EEEEcCCCCCHHHHHHHHhC
Q 000979 645 TALMGVSGAGKTTLMDVLAG 664 (1202)
Q Consensus 645 ~al~G~sGaGKSTLl~~l~g 664 (1202)
++|+|.+|+|||||++-+.+
T Consensus 6 ivlvG~~~vGKTsLi~r~~~ 25 (167)
T d1z08a1 6 VVLLGEGCVGKTSLVLRYCE 25 (167)
T ss_dssp EEEECCTTSCHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 68999999999999998765
|
| >d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=87.66 E-value=0.12 Score=52.06 Aligned_cols=70 Identities=17% Similarity=0.213 Sum_probs=37.9
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCCEEEEEcCCCccchhHHHHH
Q 000979 773 NPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLGRHSCHLISYF 852 (1202)
Q Consensus 773 ~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G~~~~~~~~~~~~f 852 (1202)
+.+++++||.- ++.......+...+.+. .....+++++++.+. +..- +.++ -+++.+.++.. +++..+.
T Consensus 101 ~~kviiiDe~d-~~~~~~~~~ll~~~e~~-~~~~~~i~~~~~~~~-i~~~-----l~sr-~~~i~~~~~~~--~~i~~~l 169 (224)
T d1sxjb2 101 KHKIVILDEAD-SMTAGAQQALRRTMELY-SNSTRFAFACNQSNK-IIEP-----LQSQ-CAILRYSKLSD--EDVLKRL 169 (224)
T ss_dssp CCEEEEEESGG-GSCHHHHHTTHHHHHHT-TTTEEEEEEESCGGG-SCHH-----HHTT-SEEEECCCCCH--HHHHHHH
T ss_pred ceEEEEEeccc-ccchhHHHHHhhhcccc-ccceeeeeccCchhh-hhhH-----HHHH-HHHhhhcccch--hhhHHHH
Confidence 46799999975 45555555555555442 234567777776542 2111 1222 35566667653 3444444
Q ss_pred h
Q 000979 853 E 853 (1202)
Q Consensus 853 ~ 853 (1202)
.
T Consensus 170 ~ 170 (224)
T d1sxjb2 170 L 170 (224)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6, N-domain species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=87.60 E-value=0.13 Score=53.02 Aligned_cols=24 Identities=29% Similarity=0.325 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCC
Q 000979 643 VLTALMGVSGAGKTTLMDVLAGRK 666 (1202)
Q Consensus 643 e~~al~G~sGaGKSTLl~~l~g~~ 666 (1202)
..+.|.||+|+||||+++.|+...
T Consensus 44 ~~lll~GppGtGKT~l~~~l~~~l 67 (276)
T d1fnna2 44 PRATLLGRPGTGKTVTLRKLWELY 67 (276)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CceEEECCCCCCHHHHHHHHHHHH
Confidence 478899999999999999998643
|
| >d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=87.60 E-value=0.13 Score=50.91 Aligned_cols=22 Identities=55% Similarity=0.847 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhCC
Q 000979 644 LTALMGVSGAGKTTLMDVLAGR 665 (1202)
Q Consensus 644 ~~al~G~sGaGKSTLl~~l~g~ 665 (1202)
+++|-|+-||||||+++.|...
T Consensus 2 lI~ieG~dGsGKST~~~~L~~~ 23 (208)
T d1gsia_ 2 LIAIEGVDGAGKRTLVEKLSGA 23 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999999764
|
| >d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab4a species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.52 E-value=0.11 Score=49.98 Aligned_cols=20 Identities=25% Similarity=0.509 Sum_probs=18.5
Q ss_pred EEEEcCCCCCHHHHHHHHhC
Q 000979 645 TALMGVSGAGKTTLMDVLAG 664 (1202)
Q Consensus 645 ~al~G~sGaGKSTLl~~l~g 664 (1202)
++++|..|+|||||++-+.+
T Consensus 8 I~lvG~~~vGKTsll~~~~~ 27 (174)
T d2bmea1 8 FLVIGNAGTGKSCLLHQFIE 27 (174)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 78999999999999998865
|
| >d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ran species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.46 E-value=0.092 Score=50.40 Aligned_cols=21 Identities=33% Similarity=0.436 Sum_probs=17.8
Q ss_pred EEEEcCCCCCHHHHHHHHhCC
Q 000979 645 TALMGVSGAGKTTLMDVLAGR 665 (1202)
Q Consensus 645 ~al~G~sGaGKSTLl~~l~g~ 665 (1202)
++++|++|+|||||++.+.+.
T Consensus 6 i~vvG~~~vGKTsli~~~~~~ 26 (170)
T d1i2ma_ 6 LVLVGDGGTGKTTFVKRHLTG 26 (170)
T ss_dssp EEEEECTTSSHHHHHHTTC--
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 789999999999999988664
|
| >d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab8a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=87.34 E-value=0.086 Score=50.74 Aligned_cols=20 Identities=35% Similarity=0.481 Sum_probs=8.5
Q ss_pred EEEEcCCCCCHHHHHHHHhC
Q 000979 645 TALMGVSGAGKTTLMDVLAG 664 (1202)
Q Consensus 645 ~al~G~sGaGKSTLl~~l~g 664 (1202)
++|+|.+|+|||||++.+.+
T Consensus 9 i~vvG~~~vGKTsLi~~l~~ 28 (173)
T d2fu5c1 9 LLLIGDSGVGKTCVLFRFSE 28 (173)
T ss_dssp EEEECCCCC-----------
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 78999999999999997765
|
| >d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.07 E-value=0.12 Score=49.72 Aligned_cols=20 Identities=25% Similarity=0.381 Sum_probs=18.3
Q ss_pred EEEEcCCCCCHHHHHHHHhC
Q 000979 645 TALMGVSGAGKTTLMDVLAG 664 (1202)
Q Consensus 645 ~al~G~sGaGKSTLl~~l~g 664 (1202)
++|+|.+|+|||||++-+.+
T Consensus 9 v~lvG~~~vGKTsLi~r~~~ 28 (173)
T d2fn4a1 9 LVVVGGGGVGKSALTIQFIQ 28 (173)
T ss_dssp EEEEECTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 78999999999999998765
|
| >d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rac species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.02 E-value=0.13 Score=50.00 Aligned_cols=22 Identities=23% Similarity=0.293 Sum_probs=19.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhCC
Q 000979 644 LTALMGVSGAGKTTLMDVLAGR 665 (1202)
Q Consensus 644 ~~al~G~sGaGKSTLl~~l~g~ 665 (1202)
-++|+|.+|+|||||++-+.+.
T Consensus 7 KivviG~~~vGKTsli~~~~~~ 28 (183)
T d1mh1a_ 7 KCVVVGDGAVGKTCLLISYTTN 28 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4899999999999999988763
|
| >d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-like estrogen-regulated growth inhibitor, RERG species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.98 E-value=0.13 Score=49.19 Aligned_cols=21 Identities=29% Similarity=0.523 Sum_probs=19.0
Q ss_pred EEEEcCCCCCHHHHHHHHhCC
Q 000979 645 TALMGVSGAGKTTLMDVLAGR 665 (1202)
Q Consensus 645 ~al~G~sGaGKSTLl~~l~g~ 665 (1202)
++++|++|+|||||++-+.+.
T Consensus 5 i~lvG~~~vGKTsli~r~~~~ 25 (168)
T d2atva1 5 LAIFGRAGVGKSALVVRFLTK 25 (168)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 689999999999999998863
|
| >d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ypt51 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=86.92 E-value=0.13 Score=49.17 Aligned_cols=21 Identities=19% Similarity=0.376 Sum_probs=18.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhC
Q 000979 644 LTALMGVSGAGKTTLMDVLAG 664 (1202)
Q Consensus 644 ~~al~G~sGaGKSTLl~~l~g 664 (1202)
-++++|.+|+|||||++-+.+
T Consensus 5 Ki~vvG~~~vGKTsLi~~~~~ 25 (170)
T d1ek0a_ 5 KLVLLGEAAVGKSSIVLRFVS 25 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 368999999999999997765
|
| >d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Staphylococcus xylosus [TaxId: 1288]
Probab=86.70 E-value=0.25 Score=47.06 Aligned_cols=33 Identities=30% Similarity=0.189 Sum_probs=25.5
Q ss_pred EeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhC
Q 000979 631 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG 664 (1202)
Q Consensus 631 iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g 664 (1202)
.|+. ++-.-.|.=+.|.|+||+|||||.-.|..
T Consensus 5 ~~H~-~~v~~~g~gvli~G~sg~GKS~la~~l~~ 37 (169)
T d1ko7a2 5 SLHG-VLVDVYGVGVLITGDSGIGKSETALELIK 37 (169)
T ss_dssp EEES-EEEEETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEE-EEEEECCEEEEEEeCCCCCHHHHHHHHHH
Confidence 3555 44556788999999999999998866653
|
| >d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab5a species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.56 E-value=0.14 Score=48.96 Aligned_cols=20 Identities=30% Similarity=0.443 Sum_probs=18.4
Q ss_pred EEEEcCCCCCHHHHHHHHhC
Q 000979 645 TALMGVSGAGKTTLMDVLAG 664 (1202)
Q Consensus 645 ~al~G~sGaGKSTLl~~l~g 664 (1202)
++++|.+|+|||||++-+.+
T Consensus 9 i~vvG~~~vGKTsLi~~l~~ 28 (170)
T d1r2qa_ 9 LVLLGESAVGKSSLVLRFVK 28 (170)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 68999999999999999875
|
| >d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.51 E-value=0.15 Score=53.06 Aligned_cols=24 Identities=46% Similarity=0.767 Sum_probs=22.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCC
Q 000979 643 VLTALMGVSGAGKTTLMDVLAGRK 666 (1202)
Q Consensus 643 e~~al~G~sGaGKSTLl~~l~g~~ 666 (1202)
-+++|+||-++|||||||.|.|..
T Consensus 33 ~vvsi~G~~~sGKS~llN~l~~~~ 56 (277)
T d1f5na2 33 VVVAIVGLYRTGKSYLMNKLAGKK 56 (277)
T ss_dssp EEEEEEEBTTSSHHHHHHHHTTCS
T ss_pred EEEEEECCCCCCHHHHHHHHcCCC
Confidence 489999999999999999999864
|
| >d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab26 species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.38 E-value=0.14 Score=48.84 Aligned_cols=20 Identities=40% Similarity=0.549 Sum_probs=18.0
Q ss_pred EEEEcCCCCCHHHHHHHHhC
Q 000979 645 TALMGVSGAGKTTLMDVLAG 664 (1202)
Q Consensus 645 ~al~G~sGaGKSTLl~~l~g 664 (1202)
++|+|++|+|||||++-+.+
T Consensus 9 i~vvG~~~vGKTsli~~~~~ 28 (170)
T d2g6ba1 9 VMLVGDSGVGKTCLLVRFKD 28 (170)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 89999999999999997654
|
| >d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein RalA species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]
Probab=86.21 E-value=0.15 Score=48.70 Aligned_cols=21 Identities=24% Similarity=0.340 Sum_probs=18.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhC
Q 000979 644 LTALMGVSGAGKTTLMDVLAG 664 (1202)
Q Consensus 644 ~~al~G~sGaGKSTLl~~l~g 664 (1202)
-++|+|.+|+|||||++-+.+
T Consensus 6 KivlvG~~~vGKTsli~~~~~ 26 (168)
T d1u8za_ 6 KVIMVGSGGVGKSALTLQFMY 26 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 378999999999999998765
|
| >d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein M-Ras (XRas) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=86.18 E-value=0.15 Score=48.76 Aligned_cols=20 Identities=25% Similarity=0.363 Sum_probs=18.1
Q ss_pred EEEEcCCCCCHHHHHHHHhC
Q 000979 645 TALMGVSGAGKTTLMDVLAG 664 (1202)
Q Consensus 645 ~al~G~sGaGKSTLl~~l~g 664 (1202)
+.++|.+|+|||||++-+.+
T Consensus 7 i~lvG~~~vGKTsll~~~~~ 26 (169)
T d1x1ra1 7 LVVVGDGGVGKSALTIQFFQ 26 (169)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 67899999999999998875
|
| >d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=86.12 E-value=0.15 Score=52.52 Aligned_cols=22 Identities=32% Similarity=0.492 Sum_probs=19.9
Q ss_pred EEEEcCCCCCHHHHHHHHhCCC
Q 000979 645 TALMGVSGAGKTTLMDVLAGRK 666 (1202)
Q Consensus 645 ~al~G~sGaGKSTLl~~l~g~~ 666 (1202)
+.|.||+|+|||+|.+.++...
T Consensus 41 iLL~GppGtGKT~l~~ala~~~ 62 (258)
T d1e32a2 41 ILLYGPPGTGKTLIARAVANET 62 (258)
T ss_dssp EEEECCTTSSHHHHHHHHHHHT
T ss_pred eEEecCCCCCchHHHHHHHHHh
Confidence 7899999999999999998753
|
| >d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=86.11 E-value=0.16 Score=51.09 Aligned_cols=41 Identities=12% Similarity=0.192 Sum_probs=27.1
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCC
Q 000979 774 PSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPS 816 (1202)
Q Consensus 774 p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~ 816 (1202)
.+++++||.- .+.......+.+.|.+.. ....++++++++.
T Consensus 100 ~kiiiiDe~d-~~~~~~~~~Ll~~le~~~-~~~~~~~~~~~~~ 140 (227)
T d1sxjc2 100 FKLIILDEAD-AMTNAAQNALRRVIERYT-KNTRFCVLANYAH 140 (227)
T ss_dssp CEEEEETTGG-GSCHHHHHHHHHHHHHTT-TTEEEEEEESCGG
T ss_pred eEEEEEeccc-cchhhHHHHHHHHhhhcc-cceeeccccCcHH
Confidence 4699999974 677777777777776542 2344555665543
|
| >d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Transcription termination factor Rho, ATPase domain species: Escherichia coli [TaxId: 562]
Probab=86.07 E-value=0.17 Score=52.57 Aligned_cols=28 Identities=25% Similarity=0.318 Sum_probs=25.7
Q ss_pred EEEeCCeEEEEEcCCCCCHHHHHHHHhC
Q 000979 637 GAFRPGVLTALMGVSGAGKTTLMDVLAG 664 (1202)
Q Consensus 637 ~~i~~Ge~~al~G~sGaGKSTLl~~l~g 664 (1202)
+.+-.|+-.+|+|++|+|||||+..|+.
T Consensus 38 ~PigrGQr~~I~g~~g~GKT~l~~~i~~ 65 (289)
T d1xpua3 38 SPIGRGQRGLIVAPPKAGKTMLLQNIAQ 65 (289)
T ss_dssp SCCBTTCEEEEEECSSSSHHHHHHHHHH
T ss_pred ccccCCCeeeEeCCCCCCHHHHHHHHHH
Confidence 4788999999999999999999999975
|
| >d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Archaeon Pyrococcus abyssi [TaxId: 29292]
Probab=86.00 E-value=0.17 Score=49.58 Aligned_cols=22 Identities=36% Similarity=0.481 Sum_probs=20.1
Q ss_pred EEEEcCCCCCHHHHHHHHhCCC
Q 000979 645 TALMGVSGAGKTTLMDVLAGRK 666 (1202)
Q Consensus 645 ~al~G~sGaGKSTLl~~l~g~~ 666 (1202)
+||+|.-.+|||||++.|.|..
T Consensus 8 IaiiGhvd~GKSTL~~~L~g~~ 29 (195)
T d1kk1a3 8 IGMVGHVDHGKTTLTKALTGVW 29 (195)
T ss_dssp EEEECSTTSSHHHHHHHHHTCC
T ss_pred EEEEeccCCcHHHHHHHHHhhh
Confidence 7999999999999999999843
|
| >d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=85.63 E-value=0.15 Score=52.10 Aligned_cols=42 Identities=19% Similarity=0.229 Sum_probs=30.1
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCC
Q 000979 773 NPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPS 816 (1202)
Q Consensus 773 ~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~ 816 (1202)
+.+++++||.-. |.......+.+.+.+. .....+|+++++++
T Consensus 131 ~~~iiiide~d~-l~~~~~~~l~~~~e~~-~~~~~~Il~tn~~~ 172 (252)
T d1sxje2 131 RYKCVIINEANS-LTKDAQAALRRTMEKY-SKNIRLIMVCDSMS 172 (252)
T ss_dssp CCEEEEEECTTS-SCHHHHHHHHHHHHHS-TTTEEEEEEESCSC
T ss_pred CceEEEeccccc-cccccchhhhcccccc-cccccceeeecccc
Confidence 567999999964 7777777776666543 23456788998875
|
| >d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoQ species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.20 E-value=0.18 Score=48.88 Aligned_cols=20 Identities=30% Similarity=0.420 Sum_probs=18.4
Q ss_pred EEEEcCCCCCHHHHHHHHhC
Q 000979 645 TALMGVSGAGKTTLMDVLAG 664 (1202)
Q Consensus 645 ~al~G~sGaGKSTLl~~l~g 664 (1202)
++|+|.+|+|||||++-+..
T Consensus 12 i~lvG~~~vGKTsLi~r~~~ 31 (185)
T d2atxa1 12 CVVVGDGAVGKTCLLMSYAN 31 (185)
T ss_dssp EEEEECTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhh
Confidence 89999999999999998765
|
| >d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein PH0525 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=85.03 E-value=0.18 Score=53.71 Aligned_cols=21 Identities=19% Similarity=0.321 Sum_probs=19.5
Q ss_pred EEEEcCCCCCHHHHHHHHhCC
Q 000979 645 TALMGVSGAGKTTLMDVLAGR 665 (1202)
Q Consensus 645 ~al~G~sGaGKSTLl~~l~g~ 665 (1202)
+||+|.+-+|||||+|+|+|.
T Consensus 3 v~lvG~pn~GKStlfn~lt~~ 23 (319)
T d1wxqa1 3 IGVVGKPNVGKSTFFSAATLV 23 (319)
T ss_dssp EEEEECTTSSHHHHHHHHHC-
T ss_pred EeEECCCCCCHHHHHHHHHCC
Confidence 799999999999999999984
|
| >d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Extracellular secretion NTPase EpsE species: Vibrio cholerae [TaxId: 666]
Probab=84.95 E-value=0.22 Score=54.94 Aligned_cols=52 Identities=23% Similarity=0.363 Sum_probs=37.8
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcce
Q 000979 765 TIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDE 825 (1202)
Q Consensus 765 ~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~ 825 (1202)
++..+|=.+|++++..|.. |++++...+ +.+..|+.|+.|.|-.+ .....+|
T Consensus 219 ~l~~~lR~dPDvi~igEiR---d~~ta~~a~----~aa~tGhlV~tTlHa~~--a~~~~~R 270 (401)
T d1p9ra_ 219 GLRAILRQDPDVVMVGEIR---DLETAQIAV----QASLTGHLVMSTLHTNT--AVGAVTR 270 (401)
T ss_dssp HHHHHGGGCCSEEEESCCC---SHHHHHHHH----HHHHTTCEEEEEECCSS--SHHHHHH
T ss_pred HHHHHHhhcCCEEEecCcC---ChHHHHHHH----HHHhcCCeEEEEeccCc--hHhhhhh
Confidence 4555667899999999997 666665554 44678999999999765 3344444
|
| >d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=84.95 E-value=0.2 Score=48.99 Aligned_cols=19 Identities=26% Similarity=0.566 Sum_probs=17.5
Q ss_pred EEEEcCCCCCHHHHHHHHh
Q 000979 645 TALMGVSGAGKTTLMDVLA 663 (1202)
Q Consensus 645 ~al~G~sGaGKSTLl~~l~ 663 (1202)
+.|+|.+|+|||||++-+.
T Consensus 5 ivllG~~~vGKTsll~r~~ 23 (200)
T d1zcba2 5 ILLLGAGESGKSTFLKQMR 23 (200)
T ss_dssp EEEECSTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHh
Confidence 6799999999999999984
|
| >d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6-like protein APE0152, N-terminal domain species: Aeropyrum pernix [TaxId: 56636]
Probab=84.78 E-value=0.15 Score=52.90 Aligned_cols=22 Identities=36% Similarity=0.490 Sum_probs=18.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhCC
Q 000979 644 LTALMGVSGAGKTTLMDVLAGR 665 (1202)
Q Consensus 644 ~~al~G~sGaGKSTLl~~l~g~ 665 (1202)
++.|.||+|+||||+++.++..
T Consensus 48 ~l~l~GppGtGKT~l~~~l~~~ 69 (287)
T d1w5sa2 48 IYGSIGRVGIGKTTLAKFTVKR 69 (287)
T ss_dssp EEECTTCCSSSHHHHHHHHHHH
T ss_pred EEEeECCCCCCHHHHHHHHHHH
Confidence 4566799999999999999864
|
| >d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap1A species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.77 E-value=0.19 Score=47.73 Aligned_cols=21 Identities=24% Similarity=0.431 Sum_probs=18.7
Q ss_pred EEEEcCCCCCHHHHHHHHhCC
Q 000979 645 TALMGVSGAGKTTLMDVLAGR 665 (1202)
Q Consensus 645 ~al~G~sGaGKSTLl~~l~g~ 665 (1202)
++++|.+|+|||||++-+.+.
T Consensus 6 ivvvG~~~vGKTsli~r~~~~ 26 (167)
T d1c1ya_ 6 LVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEECSTTSSHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 689999999999999988753
|
| >d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Cow (Bos taurus) [TaxId: 9913]
Probab=84.16 E-value=0.22 Score=49.86 Aligned_cols=20 Identities=25% Similarity=0.483 Sum_probs=18.0
Q ss_pred EEEEEcCCCCCHHHHHHHHh
Q 000979 644 LTALMGVSGAGKTTLMDVLA 663 (1202)
Q Consensus 644 ~~al~G~sGaGKSTLl~~l~ 663 (1202)
-+.|+|++|+|||||++-+.
T Consensus 8 KilllG~~~vGKTsll~~~~ 27 (221)
T d1azta2 8 RLLLLGAGESGKSTIVKQMR 27 (221)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 46899999999999999875
|
| >d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Escherichia coli [TaxId: 562]
Probab=84.06 E-value=0.29 Score=50.35 Aligned_cols=28 Identities=29% Similarity=0.436 Sum_probs=25.0
Q ss_pred EEEeCCeEEEEEcCCCCCHHHHHHHHhC
Q 000979 637 GAFRPGVLTALMGVSGAGKTTLMDVLAG 664 (1202)
Q Consensus 637 ~~i~~Ge~~al~G~sGaGKSTLl~~l~g 664 (1202)
+-+++|.++-|.||+|+|||||.-.++.
T Consensus 49 GGi~~g~itei~G~~gsGKTtl~l~~~~ 76 (263)
T d1u94a1 49 GGLPMGRIVEIYGPESSGKTTLTLQVIA 76 (263)
T ss_dssp SSEETTSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCccCceEEEEecCCCcHHHHHHHHHHH
Confidence 6899999999999999999999766654
|
| >d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Dictyostelium discoideum [TaxId: 44689]
Probab=83.94 E-value=0.23 Score=52.54 Aligned_cols=23 Identities=22% Similarity=0.598 Sum_probs=20.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCC
Q 000979 644 LTALMGVSGAGKTTLMDVLAGRK 666 (1202)
Q Consensus 644 ~~al~G~sGaGKSTLl~~l~g~~ 666 (1202)
.++++|.-+||||||+|.|.|..
T Consensus 26 ~ivVvG~~ssGKSSliNaLlG~~ 48 (306)
T d1jwyb_ 26 QIVVVGSQSSGKSSVLENIVGRD 48 (306)
T ss_dssp EEEEEECSSSSHHHHHHHHHTSC
T ss_pred eEEEEeCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999954
|
| >d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: CDC42 species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.87 E-value=0.21 Score=48.76 Aligned_cols=20 Identities=25% Similarity=0.351 Sum_probs=18.1
Q ss_pred EEEEcCCCCCHHHHHHHHhC
Q 000979 645 TALMGVSGAGKTTLMDVLAG 664 (1202)
Q Consensus 645 ~al~G~sGaGKSTLl~~l~g 664 (1202)
++|+|++|+|||||++-+.+
T Consensus 6 vvllG~~~vGKTSli~r~~~ 25 (191)
T d2ngra_ 6 CVVVGDGAVGKTCLLISYTT 25 (191)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 78999999999999988765
|
| >d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=83.78 E-value=0.23 Score=52.26 Aligned_cols=23 Identities=30% Similarity=0.605 Sum_probs=20.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCC
Q 000979 644 LTALMGVSGAGKTTLMDVLAGRK 666 (1202)
Q Consensus 644 ~~al~G~sGaGKSTLl~~l~g~~ 666 (1202)
.++++|.-.||||||+|+|.|..
T Consensus 28 ~ivvvG~~SsGKSsliNaLlg~~ 50 (299)
T d2akab1 28 QIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSC
T ss_pred eEEEEcCCCCCHHHHHHHHhCCC
Confidence 48899999999999999999953
|
| >d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoE (RND3) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=83.61 E-value=0.24 Score=47.74 Aligned_cols=20 Identities=40% Similarity=0.586 Sum_probs=17.5
Q ss_pred EEEEcCCCCCHHHHHHHHhC
Q 000979 645 TALMGVSGAGKTTLMDVLAG 664 (1202)
Q Consensus 645 ~al~G~sGaGKSTLl~~l~g 664 (1202)
+.++|.+|+|||||++-+..
T Consensus 5 ivliG~~~vGKTsli~r~~~ 24 (179)
T d1m7ba_ 5 IVVVGDSQCGKTALLHVFAK 24 (179)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 67999999999999986654
|
| >d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=83.45 E-value=0.29 Score=52.00 Aligned_cols=25 Identities=28% Similarity=0.298 Sum_probs=21.4
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCC
Q 000979 641 PGVLTALMGVSGAGKTTLMDVLAGR 665 (1202)
Q Consensus 641 ~Ge~~al~G~sGaGKSTLl~~l~g~ 665 (1202)
|...+.++||+|+|||.|.+.|+-.
T Consensus 51 p~~~~lf~Gp~GvGKT~lak~la~~ 75 (315)
T d1r6bx3 51 PVGSFLFAGPTGVGKTEVTVQLSKA 75 (315)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CceEEEEECCCcchhHHHHHHHHhh
Confidence 4446889999999999999999854
|
| >d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=83.30 E-value=0.21 Score=52.61 Aligned_cols=22 Identities=23% Similarity=0.511 Sum_probs=20.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhCC
Q 000979 644 LTALMGVSGAGKTTLMDVLAGR 665 (1202)
Q Consensus 644 ~~al~G~sGaGKSTLl~~l~g~ 665 (1202)
-+||+|.+.+|||||+++|++.
T Consensus 12 kiGivG~Pn~GKSTlfnalT~~ 33 (296)
T d1ni3a1 12 KTGIVGMPNVGKSTFFRAITKS 33 (296)
T ss_dssp EEEEEECSSSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 3899999999999999999973
|
| >d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxynucleoside monophosphate kinase species: Bacteriophage T4 [TaxId: 10665]
Probab=82.32 E-value=0.33 Score=49.15 Aligned_cols=22 Identities=36% Similarity=0.453 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhC
Q 000979 643 VLTALMGVSGAGKTTLMDVLAG 664 (1202)
Q Consensus 643 e~~al~G~sGaGKSTLl~~l~g 664 (1202)
.++||.|+-||||||+.+.|..
T Consensus 2 ~iIgiTG~igSGKsTva~~l~e 23 (241)
T d1deka_ 2 KLIFLSGVKRSGKDTTADFIMS 23 (241)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 3789999999999999999954
|
| >d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=81.89 E-value=0.27 Score=54.76 Aligned_cols=23 Identities=30% Similarity=0.410 Sum_probs=20.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCC
Q 000979 644 LTALMGVSGAGKTTLMDVLAGRK 666 (1202)
Q Consensus 644 ~~al~G~sGaGKSTLl~~l~g~~ 666 (1202)
-+.++||+|+|||-|.+.|++..
T Consensus 51 NILliGPTGvGKTlLAr~LAk~l 73 (443)
T d1g41a_ 51 NILMIGPTGVGKTEIARRLAKLA 73 (443)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHT
T ss_pred cEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999999999843
|
| >d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus, EF-G-2 [TaxId: 274]
Probab=81.84 E-value=0.3 Score=50.36 Aligned_cols=20 Identities=50% Similarity=0.732 Sum_probs=18.3
Q ss_pred EEEEEcCCCCCHHHHHHHHh
Q 000979 644 LTALMGVSGAGKTTLMDVLA 663 (1202)
Q Consensus 644 ~~al~G~sGaGKSTLl~~l~ 663 (1202)
-++|+|+.|+|||||...|.
T Consensus 4 Nv~iiGh~~~GKTtL~e~ll 23 (267)
T d2dy1a2 4 TVALVGHAGSGKTTLTEALL 23 (267)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEEcCCCCcHHHHHHHHH
Confidence 47999999999999999994
|
| >d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=81.28 E-value=0.34 Score=47.78 Aligned_cols=21 Identities=33% Similarity=0.322 Sum_probs=18.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhC
Q 000979 644 LTALMGVSGAGKTTLMDVLAG 664 (1202)
Q Consensus 644 ~~al~G~sGaGKSTLl~~l~g 664 (1202)
-++++|..++|||||++.|.+
T Consensus 5 ni~iiGhvd~GKSTL~~~Ll~ 25 (204)
T d2c78a3 5 NVGTIGHVDHGKTTLTAALTY 25 (204)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEeCCCCcHHHHHHHHHH
Confidence 379999999999999999963
|