Citrus Sinensis ID: 000984
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
ID ![]() | Alignment graph ![]() | Length ![]() |
Definition ![]() |
RBH(Q2H) ![]() |
RBH(H2Q) ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 1198 | 2.2.26 [Sep-21-2011] | |||||||
| Q9FWX7 | 1278 | ABC transporter B family | yes | no | 0.930 | 0.872 | 0.736 | 0.0 | |
| O80725 | 1286 | ABC transporter B family | no | no | 0.936 | 0.872 | 0.743 | 0.0 | |
| Q9M1Q9 | 1296 | ABC transporter B family | no | no | 0.933 | 0.862 | 0.734 | 0.0 | |
| Q9FWX8 | 1273 | ABC transporter B family | no | no | 0.944 | 0.888 | 0.715 | 0.0 | |
| Q9SYI3 | 1230 | ABC transporter B family | no | no | 0.927 | 0.903 | 0.681 | 0.0 | |
| Q9SYI2 | 1229 | ABC transporter B family | no | no | 0.922 | 0.899 | 0.684 | 0.0 | |
| Q9M0M2 | 1236 | ABC transporter B family | no | no | 0.927 | 0.898 | 0.626 | 0.0 | |
| Q9FHF1 | 1248 | ABC transporter B family | no | no | 0.929 | 0.892 | 0.586 | 0.0 | |
| Q9LJX0 | 1252 | ABC transporter B family | no | no | 0.930 | 0.890 | 0.434 | 0.0 | |
| Q54BT3 | 1397 | ABC transporter B family | yes | no | 0.954 | 0.818 | 0.419 | 0.0 |
| >sp|Q9FWX7|AB11B_ARATH ABC transporter B family member 11 OS=Arabidopsis thaliana GN=ABCB11 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 1696 bits (4393), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 836/1135 (73%), Positives = 990/1135 (87%), Gaps = 20/1135 (1%)
Query: 43 SVPFYKLFTFADSADTALMIIGSIGAIGNGLCLPLMTLLFGDLINTFGDNQNNSETVDKV 102
+VPFYKLF FADS+D LMI GSIGAIGNG+ LP MTLLFGDLI++FG NQNN + VD V
Sbjct: 40 TVPFYKLFAFADSSDVLLMICGSIGAIGNGMSLPFMTLLFGDLIDSFGKNQNNKDIVDVV 99
Query: 103 SKVAVKFVYLGIGSGIASFLQVTCWMITGERQATRIRGLYLKTILRQDVAFFDNETNTGE 162
SKV +KFVYLG+G+ A+FLQV CWMITGERQA RIR YLKTILRQD+ FFD ETNTGE
Sbjct: 100 SKVCLKFVYLGLGTLGAAFLQVACWMITGERQAARIRSTYLKTILRQDIGFFDVETNTGE 159
Query: 163 VVGRMSGDTVLIQDAMGEKVGKFLQLMATFLGGFLIAFIKGWLLTLVMLSSIPLLAMSGG 222
VVGRMSGDTVLIQDAMGEKVGKF+QL++TF+GGF++AFIKGWLLTLVML+SIPLLAM+G
Sbjct: 160 VVGRMSGDTVLIQDAMGEKVGKFIQLVSTFVGGFVLAFIKGWLLTLVMLTSIPLLAMAGA 219
Query: 223 VMAIMISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYKSGVQ 282
MA+++++ SSRGQ AYAKAA+VVEQTIGSIRTVASFTGEKQA+++YKKF+ +AYKS +Q
Sbjct: 220 AMALIVTRASSRGQAAYAKAATVVEQTIGSIRTVASFTGEKQAINSYKKFITSAYKSSIQ 279
Query: 283 EGLAAGIGLGMVMLIVFCSYALSVWYGGKLILEEGYNGGQVVNVMVAVLTGSMSLGEASP 342
+G + G+GLG++ + F SYAL++W+GGK+ILE+GY GG V+NV++ V+ GSMSLG+ SP
Sbjct: 280 QGFSTGLGLGVMFFVFFSSYALAIWFGGKMILEKGYTGGAVINVIIIVVAGSMSLGQTSP 339
Query: 343 CLSAFGAGQAAAFKMFETINRKPEIDAYDTKGKILDDIRGDIELRDVYFSYPARPNEQIF 402
C++AF AGQAAA+KMFETI RKP IDAYD GK+L+DIRGDIEL+DV+FSYPARP+E+IF
Sbjct: 340 CVTAFAAGQAAAYKMFETIKRKPLIDAYDVNGKVLEDIRGDIELKDVHFSYPARPDEEIF 399
Query: 403 SGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKI 462
GFS+ I SG TAALVG+SGSGKSTVISLIERFYDP++G VLIDG+NLKEFQL+WIR KI
Sbjct: 400 DGFSLFIPSGATAALVGESGSGKSTVISLIERFYDPKSGAVLIDGVNLKEFQLKWIRSKI 459
Query: 463 GLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQ 522
GLVSQEPVLF+ SI +NIAYGK++AT EEI+ ATELANAAKFIDKLPQG+DT+VGEHGTQ
Sbjct: 460 GLVSQEPVLFSSSIMENIAYGKENATVEEIKAATELANAAKFIDKLPQGLDTMVGEHGTQ 519
Query: 523 LSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLS 582
LSGGQKQRIAIARAILKDPRILLLDEATSALDAESE+VVQEALDR+MVNRTTVIVAHRLS
Sbjct: 520 LSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDRVMVNRTTVIVAHRLS 579
Query: 583 TVRNADMIAVIHRGKIVEKGTHSKLVEDPEGAYSQLIRLQEANKESEQTIDGQRKSEISM 642
TVRNADMIAVIHRGK+VEKG+HS+L++D EGAYSQLIRLQE NK+ + SE+S
Sbjct: 580 TVRNADMIAVIHRGKMVEKGSHSELLKDSEGAYSQLIRLQEINKDV-------KTSELSS 632
Query: 643 -ESLRHSSHRMSLRRSISRGSSIGNSSRHS----ISVSFGLPSGQFADTALGEPAGPSQP 697
S R+S +L++S+ SS+GNSSRH + ++ GL G + A + G +
Sbjct: 633 GSSFRNS----NLKKSMEGTSSVGNSSRHHSLNVLGLTTGLDLGSHSQRAGQDETGTA-- 686
Query: 698 TEEVAPEVPTRRLAYLNKPEIPVILAGTIAAMANGVILPIYGLLISSVIETFFKPPHELK 757
++E P+V R+A LNKPEIPV+L GT+AA NG I P++G+LIS VIE FFKP HELK
Sbjct: 687 SQEPLPKVSLTRIAALNKPEIPVLLLGTVAAAINGAIFPLFGILISRVIEAFFKPAHELK 746
Query: 758 KDSRFWALIYLALGAGSFLLSPAQSYFFAVAGNKLIQRIRSMCFEKVIHMEVSWFDEPEH 817
+DSRFWA+I++ALG S ++SP Q Y FAVAG KLI+RIRSMCFEK +HMEV+WFDEP++
Sbjct: 747 RDSRFWAIIFVALGVTSLIVSPTQMYLFAVAGGKLIRRIRSMCFEKAVHMEVAWFDEPQN 806
Query: 818 SSGAIGARLSADAASVRALVGDALARIVQNISTAAAGLIIAFTASWQLALIILVMLPLIG 877
SSG +GARLSADA +RALVGDAL+ VQN+++AA+GLIIAFTASW+LALIILVMLPLIG
Sbjct: 807 SSGTMGARLSADATLIRALVGDALSLAVQNVASAASGLIIAFTASWELALIILVMLPLIG 866
Query: 878 VSGYTQMKFMKGFSADAKMKYEEASQVANDAVGSIRTVASFCAEEKVMQLYKKKCEAPMK 937
++G+ Q+KFMKGFSADAK KYEEASQVANDAVGSIRTVASFCAEEKVMQ+YKK+CE P+K
Sbjct: 867 INGFVQVKFMKGFSADAKSKYEEASQVANDAVGSIRTVASFCAEEKVMQMYKKQCEGPIK 926
Query: 938 TGIRQGMVSGGGFGASFFLLFAFYAASFYAGARLVEDGKATFSDVFKVFFSLTMTAIGIS 997
GI+QG +SG GFG SFF+LF YA SFYAGARLVEDGK TF++VF+VFF+LTM AIGIS
Sbjct: 927 DGIKQGFISGLGFGFSFFILFCVYATSFYAGARLVEDGKTTFNNVFQVFFALTMAAIGIS 986
Query: 998 QSSSFSSDSNKAKSAAASIFAIIDRESKIDPSDESGTILEDVKGEIELHHVSFKYPSRPD 1057
QSS+F+ DS+KAK AAASIFAIIDR+SKID SDE+GT+LE+VKG+IEL H+SF YP+RPD
Sbjct: 987 QSSTFAPDSSKAKVAAASIFAIIDRKSKIDSSDETGTVLENVKGDIELRHLSFTYPARPD 1046
Query: 1058 VQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWL 1117
+Q+FRDL L IRAGKTVALVGESGSGKSTV+SLLQRFYDPD+GHITLDGVE++KLQLKWL
Sbjct: 1047 IQIFRDLCLTIRAGKTVALVGESGSGKSTVISLLQRFYDPDSGHITLDGVELKKLQLKWL 1106
Query: 1118 RQQMGLVSQEPVLFNDTIRANIAYGKGGD--ATEAEIQAASEMANAHKFICSLQQ 1170
RQQMGLV QEPVLFNDTIRANIAYGKG + ATE+EI AA+E+ANAHKFI S+QQ
Sbjct: 1107 RQQMGLVGQEPVLFNDTIRANIAYGKGSEEAATESEIIAAAELANAHKFISSIQQ 1161
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|O80725|AB4B_ARATH ABC transporter B family member 4 OS=Arabidopsis thaliana GN=ABCB4 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 1689 bits (4375), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 841/1131 (74%), Positives = 988/1131 (87%), Gaps = 9/1131 (0%)
Query: 43 SVPFYKLFTFADSADTALMIIGSIGAIGNGLCLPLMTLLFGDLINTFGDNQNNSETVDKV 102
+VPFYKLF FADS D LMI+G++G+IGNGL PLMTLLFGDLI+ FG+NQ N T DKV
Sbjct: 45 TVPFYKLFAFADSFDFLLMILGTLGSIGNGLGFPLMTLLFGDLIDAFGENQTN--TTDKV 102
Query: 103 SKVAVKFVYLGIGSGIASFLQVTCWMITGERQATRIRGLYLKTILRQDVAFFDNETNTGE 162
SKVA+KFV+LGIG+ A+FLQ++ WMI+GERQA RIR LYLKTILRQD+AFFD +TNTGE
Sbjct: 103 SKVALKFVWLGIGTFAAAFLQLSGWMISGERQAARIRSLYLKTILRQDIAFFDIDTNTGE 162
Query: 163 VVGRMSGDTVLIQDAMGEKVGKFLQLMATFLGGFLIAFIKGWLLTLVMLSSIPLLAMSGG 222
VVGRMSGDTVLIQDAMGEKVGK +QL+ATF+GGF+IAF++GWLLTLVMLSSIPLL M+G
Sbjct: 163 VVGRMSGDTVLIQDAMGEKVGKAIQLLATFVGGFVIAFVRGWLLTLVMLSSIPLLVMAGA 222
Query: 223 VMAIMISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYKSGVQ 282
++AI+I+K +SRGQ AYAKAA+VVEQTIGSIRTVASFTGEKQA+SNY K LVTAYK+GV
Sbjct: 223 LLAIVIAKTASRGQTAYAKAATVVEQTIGSIRTVASFTGEKQAISNYNKHLVTAYKAGVI 282
Query: 283 EGLAAGIGLGMVMLIVFCSYALSVWYGGKLILEEGYNGGQVVNVMVAVLTGSMSLGEASP 342
EG + G+GLG + L+VFCSYAL+VWYGGKLIL++GY GGQV+N+++AVLTGSMSLG+ SP
Sbjct: 283 EGGSTGLGLGTLFLVVFCSYALAVWYGGKLILDKGYTGGQVLNIIIAVLTGSMSLGQTSP 342
Query: 343 CLSAFGAGQAAAFKMFETINRKPEIDAYDTKGKILDDIRGDIELRDVYFSYPARPNEQIF 402
CLSAF AGQAAA+KMFETI R+P ID+Y T GK+LDDI+GDIEL+DVYF+YPARP+EQIF
Sbjct: 343 CLSAFAAGQAAAYKMFETIERRPNIDSYSTNGKVLDDIKGDIELKDVYFTYPARPDEQIF 402
Query: 403 SGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKI 462
GFS+ ISSGTT ALVGQSGSGKSTV+SLIERFYDPQAG+VLIDGINLKEFQL+WIR KI
Sbjct: 403 RGFSLFISSGTTVALVGQSGSGKSTVVSLIERFYDPQAGDVLIDGINLKEFQLKWIRSKI 462
Query: 463 GLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQ 522
GLVSQEPVLFT SIKDNIAYGK+DATTEEI+ A ELANA+KF+DKLPQG+DT+VGEHGTQ
Sbjct: 463 GLVSQEPVLFTASIKDNIAYGKEDATTEEIKAAAELANASKFVDKLPQGLDTMVGEHGTQ 522
Query: 523 LSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLS 582
LSGGQKQRIA+ARAILKDPRILLLDEATSALDAESE+VVQEALDRIMVNRTTV+VAHRLS
Sbjct: 523 LSGGQKQRIAVARAILKDPRILLLDEATSALDAESERVVQEALDRIMVNRTTVVVAHRLS 582
Query: 583 TVRNADMIAVIHRGKIVEKGTHSKLVEDPEGAYSQLIRLQEANKESEQTIDGQRKSEISM 642
TVRNADMIAVIH+GKIVEKG+H++L++DPEGAYSQLIRLQE K E + Q+ S S+
Sbjct: 583 TVRNADMIAVIHQGKIVEKGSHTELLKDPEGAYSQLIRLQEEKKSDENAAEEQKMS--SI 640
Query: 643 ESLRHSSHRM-SLRRSISR-GSSIGNSSRHSISVSFGLPSGQFADTALG-EPAGPSQPTE 699
ES + SS R SL RS+S+ GSS GNSSRHS ++ FG P+G + E +QP
Sbjct: 641 ESFKQSSLRKSSLGRSLSKGGSSRGNSSRHSFNM-FGFPAGIDGNVVQDQEEDDTTQPKT 699
Query: 700 EVAPEVPTRRLAYLNKPEIPVILAGTIAAMANGVILPIYGLLISSVIETFFKPPHELKKD 759
E +V R+A LNKPEIPV++ G+I+A ANGVILPI+G+LISSVI+ FF+PP +LK+D
Sbjct: 700 E-PKKVSIFRIAALNKPEIPVLILGSISAAANGVILPIFGILISSVIKAFFQPPKKLKED 758
Query: 760 SRFWALIYLALGAGSFLLSPAQSYFFAVAGNKLIQRIRSMCFEKVIHMEVSWFDEPEHSS 819
+ FWA+I++ LG S + PAQ++FFA+AG KL+QRIRSMCFEKV+HMEV WFDEPE+SS
Sbjct: 759 TSFWAIIFMVLGFASIIAYPAQTFFFAIAGCKLVQRIRSMCFEKVVHMEVGWFDEPENSS 818
Query: 820 GAIGARLSADAASVRALVGDALARIVQNISTAAAGLIIAFTASWQLALIILVMLPLIGVS 879
G IGARLSADAA++R LVGD+LA+ VQN+S+ AGLIIAF A WQLA ++L MLPLI ++
Sbjct: 819 GTIGARLSADAATIRGLVGDSLAQTVQNLSSILAGLIIAFLACWQLAFVVLAMLPLIALN 878
Query: 880 GYTQMKFMKGFSADAKMKYEEASQVANDAVGSIRTVASFCAEEKVMQLYKKKCEAPMKTG 939
G+ MKFMKGFSADAK Y EASQVANDAVGSIRTVASFCAE+KVM +Y KKCE PMK G
Sbjct: 879 GFLYMKFMKGFSADAKKMYGEASQVANDAVGSIRTVASFCAEDKVMNMYSKKCEGPMKNG 938
Query: 940 IRQGMVSGGGFGASFFLLFAFYAASFYAGARLVEDGKATFSDVFKVFFSLTMTAIGISQS 999
IRQG+VSG GFG SFF+LF+ YAASFY GARLV+DGK TF VF+VFF+LTM A+ ISQS
Sbjct: 939 IRQGIVSGIGFGFSFFVLFSSYAASFYVGARLVDDGKTTFDSVFRVFFALTMAAMAISQS 998
Query: 1000 SSFSSDSNKAKSAAASIFAIIDRESKIDPSDESGTILEDVKGEIELHHVSFKYPSRPDVQ 1059
SS S DS+KA AAASIFAI+DRESKIDPS ESG +L++VKG+IEL HVSFKYP+RPDVQ
Sbjct: 999 SSLSPDSSKADVAAASIFAIMDRESKIDPSVESGRVLDNVKGDIELRHVSFKYPARPDVQ 1058
Query: 1060 VFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQ 1119
+F+DL L IRAGKTVALVGESGSGKSTV++LLQRFYDPD+G ITLDGVEI+ L+LKWLRQ
Sbjct: 1059 IFQDLCLSIRAGKTVALVGESGSGKSTVIALLQRFYDPDSGEITLDGVEIKSLRLKWLRQ 1118
Query: 1120 QMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQ 1170
Q GLVSQEP+LFN+TIRANIAYGKGGDA+E+EI +++E++NAH FI LQQ
Sbjct: 1119 QTGLVSQEPILFNETIRANIAYGKGGDASESEIVSSAELSNAHGFISGLQQ 1169
|
Auxin influx transporter that mediates the transport of auxin in roots. Contributes to the basipetal transport in hypocotyls and root tips by establishing an auxin uptake sink in the root cap. Confers sensitivity to 1-N-naphthylphthalamic acid (NPA). Regulates the root elongation, the initiation of lateral roots and the development of root hairs. Can transports IAA, indole-3-propionic acid, NPA syringic acid, vanillic acid and some auxin metabolites, but not 2,4-D and 1-naphthaleneacetic acid. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9M1Q9|AB21B_ARATH ABC transporter B family member 21 OS=Arabidopsis thaliana GN=ABCB21 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 1674 bits (4334), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 834/1136 (73%), Positives = 981/1136 (86%), Gaps = 18/1136 (1%)
Query: 39 EKTESVPFYKLFTFADSADTALMIIGSIGAIGNGLCLPLMTLLFGDLINTFGDNQNNSET 98
EKT++VPF+KLF FADS D LMI+G+IGA+GNGL P+MT+LFGD+I+ FG NQN+S+
Sbjct: 58 EKTKTVPFHKLFAFADSFDIILMILGTIGAVGNGLGFPIMTILFGDVIDVFGQNQNSSDV 117
Query: 99 VDKVSKVAVKFVYLGIGSGIASFLQVTCWMITGERQATRIRGLYLKTILRQDVAFFDNET 158
DK++KVA+KFVYLG+G+ +A+ LQV+ WMI+GERQA RIR LYL+TILRQD+AFFD ET
Sbjct: 118 SDKIAKVALKFVYLGLGTLVAALLQVSGWMISGERQAGRIRSLYLQTILRQDIAFFDVET 177
Query: 159 NTGEVVGRMSGDTVLIQDAMGEKVGKFLQLMATFLGGFLIAFIKGWLLTLVMLSSIPLLA 218
NTGEVVGRMSGDTVLIQDAMGEKVGK +QL++TF+GGF+IAF +GWLLTLVM+SSIPLL
Sbjct: 178 NTGEVVGRMSGDTVLIQDAMGEKVGKAIQLVSTFIGGFVIAFTEGWLLTLVMVSSIPLLV 237
Query: 219 MSGGVMAIMISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYK 278
MSG +AI+ISKM+SRGQ +YAKAA VVEQT+GSIRTVASFTGEKQA+SNY K LV+AY+
Sbjct: 238 MSGAALAIVISKMASRGQTSYAKAAVVVEQTVGSIRTVASFTGEKQAISNYNKHLVSAYR 297
Query: 279 SGVQEGLAAGIGLGMVMLIVFCSYALSVWYGGKLILEEGYNGGQVVNVMVAVLTGSMSLG 338
+GV EG + G+GLG + +++FC+YAL+VWYGGK+ILE+GY GGQV+ ++ AVLTGSMSLG
Sbjct: 298 AGVFEGASTGLGLGTLNIVIFCTYALAVWYGGKMILEKGYTGGQVLIIIFAVLTGSMSLG 357
Query: 339 EASPCLSAFGAGQAAAFKMFETINRKPEIDAYDTKGKILDDIRGDIELRDVYFSYPARPN 398
+ASPCLSAF AGQAAA+KMFE I RKPEIDA DT GK+LDDIRGDIEL +V FSYPARP
Sbjct: 358 QASPCLSAFAAGQAAAYKMFEAIKRKPEIDASDTTGKVLDDIRGDIELNNVNFSYPARPE 417
Query: 399 EQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWI 458
EQIF GFS+SISSG+T ALVGQSGSGKSTV+SLIERFYDPQ+GEV IDGINLKEFQL+WI
Sbjct: 418 EQIFRGFSLSISSGSTVALVGQSGSGKSTVVSLIERFYDPQSGEVRIDGINLKEFQLKWI 477
Query: 459 RKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGE 518
R KIGLVSQEPVLFT SIK+NIAYGK++AT EEIR ATELANA+KFIDKLPQG+DT+VGE
Sbjct: 478 RSKIGLVSQEPVLFTSSIKENIAYGKENATVEEIRKATELANASKFIDKLPQGLDTMVGE 537
Query: 519 HGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVA 578
HGTQLSGGQKQRIA+ARAILKDPRILLLDEATSALDAESE++VQEALDRIMVNRTTV+VA
Sbjct: 538 HGTQLSGGQKQRIAVARAILKDPRILLLDEATSALDAESERIVQEALDRIMVNRTTVVVA 597
Query: 579 HRLSTVRNADMIAVIHRGKIVEKGTHSKLVEDPEGAYSQLIRLQEANKESEQTIDGQRKS 638
HRLSTVRNADMIAVIH+GKIVEKG+HS+L+ DPEGAYSQLIRLQE K++E + D Q+
Sbjct: 598 HRLSTVRNADMIAVIHQGKIVEKGSHSELLRDPEGAYSQLIRLQEDTKQTEDSTDEQK-- 655
Query: 639 EISMESLRHSSHRMSLRRSISRGSSIGNSSRHSISVSFGLPSGQFADTALGEPAGPSQPT 698
+SMES++ SS R S S S FG P+G DT A P +
Sbjct: 656 -LSMESMKRSSLRKSSLSRSLSKRSSSFS-------MFGFPAG--IDT--NNEAIPEKDI 703
Query: 699 EEVAP----EVPTRRLAYLNKPEIPVILAGTIAAMANGVILPIYGLLISSVIETFFKPPH 754
+ P +V R+A LNKPEIP+++ G+IAA+ NGVILPI+G+LISSVI+ FFKPP
Sbjct: 704 KVSTPIKEKKVSFFRVAALNKPEIPMLILGSIAAVLNGVILPIFGILISSVIKAFFKPPE 763
Query: 755 ELKKDSRFWALIYLALGAGSFLLSPAQSYFFAVAGNKLIQRIRSMCFEKVIHMEVSWFDE 814
+LK D+RFWA+I++ LG S ++ PAQ+ FF++AG KL+QRIRSMCFEKV+ MEV WFDE
Sbjct: 764 QLKSDTRFWAIIFMLLGVASMVVFPAQTIFFSIAGCKLVQRIRSMCFEKVVRMEVGWFDE 823
Query: 815 PEHSSGAIGARLSADAASVRALVGDALARIVQNISTAAAGLIIAFTASWQLALIILVMLP 874
E+SSGAIGARLSADAA+VR LVGDALA+ VQN+++ AGL+IAF ASWQLA I+L MLP
Sbjct: 824 TENSSGAIGARLSADAATVRGLVGDALAQTVQNLASVTAGLVIAFVASWQLAFIVLAMLP 883
Query: 875 LIGVSGYTQMKFMKGFSADAKMKYEEASQVANDAVGSIRTVASFCAEEKVMQLYKKKCEA 934
LIG++GY MKFM GFSADAK YEEASQVANDAVGSIRTVASFCAEEKVM++YKKKCE
Sbjct: 884 LIGLNGYIYMKFMVGFSADAKRMYEEASQVANDAVGSIRTVASFCAEEKVMKMYKKKCEG 943
Query: 935 PMKTGIRQGMVSGGGFGASFFLLFAFYAASFYAGARLVEDGKATFSDVFKVFFSLTMTAI 994
PM+TGIRQG+VSG GFG SFF+LF+ YAASFYAGARLV+DGK TF VF+VFF+LTM A+
Sbjct: 944 PMRTGIRQGIVSGIGFGVSFFVLFSSYAASFYAGARLVDDGKTTFDSVFRVFFALTMAAV 1003
Query: 995 GISQSSSFSSDSNKAKSAAASIFAIIDRESKIDPSDESGTILEDVKGEIELHHVSFKYPS 1054
ISQSSS S DS+KA +AAASIFA+IDRESKIDPSDESG +L++VKG+IEL H+SFKYPS
Sbjct: 1004 AISQSSSLSPDSSKASNAAASIFAVIDRESKIDPSDESGRVLDNVKGDIELRHISFKYPS 1063
Query: 1055 RPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQL 1114
RPDVQ+F+DL L IRAGKT+ALVGESGSGKSTV++LLQRFYDPD+G ITLDGVEI+ LQL
Sbjct: 1064 RPDVQIFQDLCLSIRAGKTIALVGESGSGKSTVIALLQRFYDPDSGQITLDGVEIKTLQL 1123
Query: 1115 KWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQ 1170
KWLRQQ GLVSQEPVLFN+TIRANIAYGKGGDATE EI +A+E++NAH FI LQQ
Sbjct: 1124 KWLRQQTGLVSQEPVLFNETIRANIAYGKGGDATETEIVSAAELSNAHGFISGLQQ 1179
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FWX8|AB12B_ARATH ABC transporter B family member 12 OS=Arabidopsis thaliana GN=ABCB12 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 1651 bits (4275), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 825/1153 (71%), Positives = 972/1153 (84%), Gaps = 22/1153 (1%)
Query: 30 HDSEKGKQTEKTESVPFYKLFTFADSADTALMIIGSIGAIGNGLCLPLMTLLFGDLINTF 89
H+ K EK ++VP YKLF FADS D LMI GS+GAIGNG+CLPLMTLLFGDLI++F
Sbjct: 14 HEHSTSKTDEKAKTVPLYKLFAFADSFDVFLMICGSLGAIGNGVCLPLMTLLFGDLIDSF 73
Query: 90 GDNQNNSETVDKVSKVAVKFVYLGIGSGIASFLQVTCWMITGERQATRIRGLYLKTILRQ 149
G NQNN + VD VSKV +KFVYLG+G A+FLQV CWMITGERQA +IR YLKTILRQ
Sbjct: 74 GKNQNNKDIVDVVSKVCLKFVYLGLGRLGAAFLQVACWMITGERQAAKIRSNYLKTILRQ 133
Query: 150 DVAFFDNETNTGEVVGRMSGDTVLIQDAMGEKVGKFLQLMATFLGGFLIAFIKGWLLTLV 209
D+ FFD ETNTGEVVGRMSGDTV IQDAMGEKVGKF+QL++TF+GGF +AF KGWLLTLV
Sbjct: 134 DIGFFDVETNTGEVVGRMSGDTVHIQDAMGEKVGKFIQLVSTFVGGFALAFAKGWLLTLV 193
Query: 210 MLSSIPLLAMSGGVMAIMISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQAMSNY 269
ML+SIP LAM+G MA+++++ SSRGQ AYAKAA+VVEQTIGSIRTVASFTGEKQA+++Y
Sbjct: 194 MLTSIPFLAMAGAAMALLVTRASSRGQAAYAKAATVVEQTIGSIRTVASFTGEKQAINSY 253
Query: 270 KKFLVTAYKSGVQEGLAAGIGLGMVMLIVFCSYALSVWYGGKLILEEGYNGGQVVNVMVA 329
KK++ +AYKS +Q+G + G+GLG+++ + F SYAL++W+GGK+ILE+GY GG V+NV++
Sbjct: 254 KKYITSAYKSSIQQGFSTGLGLGVMIYVFFSSYALAIWFGGKMILEKGYTGGSVINVIII 313
Query: 330 VLTGSMSLGEASPCLSAFGAGQAAAFKMFETINRKPEIDAYDTKGKILDDIRGDIELRDV 389
V+ GSMSLG+ SPC++AF AGQAAA+KMFETI RKP IDAYD GK+L DIRGDIEL+DV
Sbjct: 314 VVAGSMSLGQTSPCVTAFAAGQAAAYKMFETIKRKPLIDAYDVNGKVLGDIRGDIELKDV 373
Query: 390 YFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGIN 449
+FSYPARP+E+IF GFS+ I SG TAALVG+SGSGKSTVI+LIERFYDP+AGEVLIDGIN
Sbjct: 374 HFSYPARPDEEIFDGFSLFIPSGATAALVGESGSGKSTVINLIERFYDPKAGEVLIDGIN 433
Query: 450 LKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLP 509
LKEFQL+WIR KIGLV QEPVLF+ SI +NIAYGK++AT +EI+VATELANAAKFI+ LP
Sbjct: 434 LKEFQLKWIRSKIGLVCQEPVLFSSSIMENIAYGKENATLQEIKVATELANAAKFINNLP 493
Query: 510 QGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIM 569
QG+DT VGEHGTQLSGGQKQRIAIARAILKDPR+LLLDEATSALD ESE+VVQEALDR+M
Sbjct: 494 QGLDTKVGEHGTQLSGGQKQRIAIARAILKDPRVLLLDEATSALDTESERVVQEALDRVM 553
Query: 570 VNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVEDPEGAYSQLIRLQEANKESE 629
VNRTTV+VAHRLSTVRNADMIAVIH GK+VEKG+HS+L++D GAYSQLIR QE NK
Sbjct: 554 VNRTTVVVAHRLSTVRNADMIAVIHSGKMVEKGSHSELLKDSVGAYSQLIRCQEINKGH- 612
Query: 630 QTIDGQRKSEISMESLRHSSHRMSLRRSISRG--SSIGNSSRHSISVSFGLPSGQFADTA 687
D + S S R+S+ +S S+ G SS GNSSRH GL FA
Sbjct: 613 ---DAKPSDMASGSSFRNSNLNISREGSVISGGTSSFGNSSRHHSLNVLGL----FAGLD 665
Query: 688 LG--------EPAGPSQPTEEVAPEVPTRRLAYLNKPEIPVILAGTIAAMANGVILPIYG 739
LG E G + ++E +V R+A LNKPEIPV+L GT+ A NG I P++G
Sbjct: 666 LGSGSQRVGQEETGTT--SQEPLRKVSLTRIAALNKPEIPVLLLGTVVAAINGAIFPLFG 723
Query: 740 LLISSVIETFFKPPHELKKDSRFWALIYLALGAGSFLLSPAQSYFFAVAGNKLIQRIRSM 799
+LIS VIE FFKP +LKKDSRFWA+I++ALG S ++SP+Q Y FAVAG KLI+RI+SM
Sbjct: 724 ILISRVIEAFFKPADQLKKDSRFWAIIFVALGVTSLIVSPSQMYLFAVAGGKLIRRIQSM 783
Query: 800 CFEKVIHMEVSWFDEPEHSSGAIGARLSADAASVRALVGDALARIVQNISTAAAGLIIAF 859
CFEK +HMEVSWFDEPE+SSG +GARLS DAA +RALVGDAL+ VQN ++AA+GLIIAF
Sbjct: 784 CFEKAVHMEVSWFDEPENSSGTMGARLSTDAALIRALVGDALSLAVQNAASAASGLIIAF 843
Query: 860 TASWQLALIILVMLPLIGVSGYTQMKFMKGFSADAKMKYEEASQVANDAVGSIRTVASFC 919
TASW+LALIILVMLPLIG++G+ Q+KFMKGFSADAK KYEEASQVANDAVGSIRTVASFC
Sbjct: 844 TASWELALIILVMLPLIGINGFLQVKFMKGFSADAKSKYEEASQVANDAVGSIRTVASFC 903
Query: 920 AEEKVMQLYKKKCEAPMKTGIRQGMVSGGGFGASFFLLFAFYAASFYAGARLVEDGKATF 979
AEEKVMQ+Y K+CE P+K G++QG +SG GFG SFF+LF YA SFYA ARLVEDGK TF
Sbjct: 904 AEEKVMQMYNKQCEGPIKDGVKQGFISGLGFGFSFFILFCVYATSFYAAARLVEDGKTTF 963
Query: 980 SDVFKVFFSLTMTAIGISQSSSFSSDSNKAKSAAASIFAIIDRESKIDPSDESGTILEDV 1039
DVF+VFF+LTM AIGISQSS+F+ DS+KAK AAASIFAIIDR+SKID SDE+GT+LE+V
Sbjct: 964 IDVFQVFFALTMAAIGISQSSTFAPDSSKAKVAAASIFAIIDRKSKIDSSDETGTVLENV 1023
Query: 1040 KGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDA 1099
KG+IEL H+SF YP+RP +Q+FRDL L IRAGKTVALVGESGSGKSTV+SLLQRFYDPD+
Sbjct: 1024 KGDIELRHLSFTYPARPGIQIFRDLCLTIRAGKTVALVGESGSGKSTVISLLQRFYDPDS 1083
Query: 1100 GHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGD--ATEAEIQAASE 1157
G ITLDGVE++KLQLKWLRQQMGLV QEPVLFNDTIRANIAYGKG + ATE+EI AA+E
Sbjct: 1084 GQITLDGVELKKLQLKWLRQQMGLVGQEPVLFNDTIRANIAYGKGSEEAATESEIIAAAE 1143
Query: 1158 MANAHKFICSLQQ 1170
+ANAHKFI S+QQ
Sbjct: 1144 LANAHKFISSIQQ 1156
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SYI3|AB5B_ARATH ABC transporter B family member 5 OS=Arabidopsis thaliana GN=ABCB5 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 1595 bits (4130), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 776/1139 (68%), Positives = 948/1139 (83%), Gaps = 28/1139 (2%)
Query: 33 EKGKQTEKTESVPFYKLFTFADSADTALMIIGSIGAIGNGLCLPLMTLLFGDLINTFGDN 92
+KG T++VPFYKLF F+DS D LMI+GSIGAI NG+C PLMTLLFG+LI+ G N
Sbjct: 2 KKGNLEANTKTVPFYKLFFFSDSTDVLLMIVGSIGAIANGVCSPLMTLLFGELIDAMGPN 61
Query: 93 QNNSETVDKVSKVAVKFVYLGIGSGIASFLQVTCWMITGERQATRIRGLYLKTILRQDVA 152
QNN E V++VSKV + VYLG+G+ A+FLQV CWMITGERQA RIR LYLKTILRQD+
Sbjct: 62 QNNEEIVERVSKVCLSLVYLGLGALGAAFLQVACWMITGERQAARIRSLYLKTILRQDIG 121
Query: 153 FFDNETNTGEVVGRMSGDTVLIQDAMGEKVGKFLQLMATFLGGFLIAFIKGWLLTLVMLS 212
FFD E TGEVVGRMSGDTVLI DAMGEKVGKF+QL++TF+GGF+IAF++GWLLTLVML+
Sbjct: 122 FFDVEMTTGEVVGRMSGDTVLILDAMGEKVGKFIQLISTFVGGFVIAFLRGWLLTLVMLT 181
Query: 213 SIPLLAMSGGVMAIMISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQAMSNYKKF 272
SIPLLAMSG +AI++++ SS+ Q AYAKA++VVEQT+GSIRTVASFTGEKQAMS+YK+
Sbjct: 182 SIPLLAMSGAAIAIIVTRASSQEQAAYAKASNVVEQTLGSIRTVASFTGEKQAMSSYKEL 241
Query: 273 LVTAYKSGVQEGLAAGIGLGMVMLIVFCSYALSVWYGGKLILEEGYNGGQVVNVMVAVLT 332
+ AYKS V++G G+GLG++ L+ F +YAL W+GG++IL +GY GG V+NVMV V++
Sbjct: 242 INLAYKSNVKQGFVTGLGLGVMFLVFFSTYALGTWFGGEMILRKGYTGGAVINVMVTVVS 301
Query: 333 GSMSLGEASPCLSAFGAGQAAAFKMFETINRKPEIDAYDTKGKILDDIRGDIELRDVYFS 392
S++LG+ASPCL+AF AG+AAA+KMFETI R+P ID +D GK+L+DIRG+IELRDV FS
Sbjct: 302 SSIALGQASPCLTAFTAGKAAAYKMFETIEREPLIDTFDLNGKVLEDIRGEIELRDVCFS 361
Query: 393 YPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKE 452
YPARP E++F GFS+ I SGTT ALVG+SGSGKSTVISLIERFYDP +G+VLIDG++LKE
Sbjct: 362 YPARPKEEVFGGFSLLIPSGTTTALVGESGSGKSTVISLIERFYDPNSGQVLIDGVDLKE 421
Query: 453 FQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGI 512
FQL+WIR KIGLVSQEPVLF+ SI +NI YGK+ AT EEI+ A++LANAAKFIDKLP G+
Sbjct: 422 FQLKWIRGKIGLVSQEPVLFSSSIMENIGYGKEGATVEEIQAASKLANAAKFIDKLPLGL 481
Query: 513 DTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNR 572
+TLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESE+VVQEALDRIMVNR
Sbjct: 482 ETLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDRIMVNR 541
Query: 573 TTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVEDPEGAYSQLIRLQEANKESEQTI 632
TTVIVAHRLSTVRNAD+IAVIHRGKIVE+G+HS+L++D EGAYSQL+RLQE NKES+
Sbjct: 542 TTVIVAHRLSTVRNADIIAVIHRGKIVEEGSHSELLKDHEGAYSQLLRLQEINKESK--- 598
Query: 633 DGQRKSEISMESLRHSSHRMSLRRSISRGSSIGNSSRHSISVSFGLPSGQFADTALGEPA 692
R S+ SRG++ S SV GL +GQ
Sbjct: 599 -------------RLEISDGSISSGSSRGNNSTRQDDDSFSV-LGLLAGQ---------- 634
Query: 693 GPSQPTEEVAPEVPTRRLAYLNKPEIPVILAGTIAAMANGVILPIYGLLISSVIETFFKP 752
++ ++E++ +V R+A LNKPEIP+++ GT+ NG I PI+G+L + VIE FFK
Sbjct: 635 DSTKMSQELSQKVSFTRIAALNKPEIPILILGTLVGAVNGTIFPIFGILFAKVIEAFFKA 694
Query: 753 PHELKKDSRFWALIYLALGAGSFLLSPAQSYFFAVAGNKLIQRIRSMCFEKVIHMEVSWF 812
PHELK+DSRFW++I++ LG + ++ P +Y FA+AG +LI+RIRSMCFEKV+HMEV WF
Sbjct: 695 PHELKRDSRFWSMIFVLLGVAAVIVYPTTNYLFAIAGGRLIRRIRSMCFEKVVHMEVGWF 754
Query: 813 DEPEHSSGAIGARLSADAASVRALVGDALARIVQNISTAAAGLIIAFTASWQLALIILVM 872
DEP +SSGA+GARLSADAA +R LVGD+L V+N+++ GLIIAFTASW++A+IILV+
Sbjct: 755 DEPGNSSGAMGARLSADAALIRTLVGDSLCLSVKNVASLVTGLIIAFTASWEVAIIILVI 814
Query: 873 LPLIGVSGYTQMKFMKGFSADAKMKYEEASQVANDAVGSIRTVASFCAEEKVMQLYKKKC 932
+P IG++GY Q+KFMKGFSADAK KYEEASQVANDAVGSIRTVASFCAEEKVM++YKK+C
Sbjct: 815 IPFIGINGYIQIKFMKGFSADAKAKYEEASQVANDAVGSIRTVASFCAEEKVMEMYKKRC 874
Query: 933 EAPMKTGIRQGMVSGGGFGASFFLLFAFYAASFYAGARLVEDGKATFSDVFKVFFSLTMT 992
E +K+GI+QG++SG GFG SFF+L++ YA+ FY GARLV+ G+ F+DVF+VF +LT+T
Sbjct: 875 EDTIKSGIKQGLISGVGFGISFFVLYSVYASCFYVGARLVKAGRTNFNDVFQVFLALTLT 934
Query: 993 AIGISQSSSFSSDSNKAKSAAASIFAIIDRESKIDPSDESGTILEDVKGEIELHHVSFKY 1052
A+GISQ+SSF+ DS+K K AA SIF IIDR SKID DESG +LE+VKG+IEL H+SF Y
Sbjct: 935 AVGISQASSFAPDSSKGKGAAVSIFRIIDRISKIDSRDESGMVLENVKGDIELCHISFTY 994
Query: 1053 PSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKL 1112
+RPDVQVFRDL L IRAG+TVALVGESGSGKSTV+SLLQRFYDPD+GHITLDGVE++KL
Sbjct: 995 QTRPDVQVFRDLCLSIRAGQTVALVGESGSGKSTVISLLQRFYDPDSGHITLDGVELKKL 1054
Query: 1113 QLKWLRQQMGLVSQEPVLFNDTIRANIAYGKGG-DATEAEIQAASEMANAHKFICSLQQ 1170
+LKWLRQQMGLV QEPVLFNDTIRANIAYGKGG +ATEAEI AASE+ANAH+FI S+Q+
Sbjct: 1055 RLKWLRQQMGLVGQEPVLFNDTIRANIAYGKGGEEATEAEIIAASELANAHRFISSIQK 1113
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SYI2|AB3B_ARATH ABC transporter B family member 3 OS=Arabidopsis thaliana GN=ABCB3 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 1545 bits (4001), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 778/1137 (68%), Positives = 954/1137 (83%), Gaps = 32/1137 (2%)
Query: 39 EKTESVPFYKLFTFADSADTALMIIGSIGAIGNGLCLPLMTLLFGDLINTFGDNQNNSET 98
EKT++VPFYKLF+F+DS D LMI+GSIGAIGNG+ PLMTLLFGDLI++ G NQ+N +
Sbjct: 3 EKTKTVPFYKLFSFSDSTDVLLMIVGSIGAIGNGVGFPLMTLLFGDLIDSIGQNQSNKDI 62
Query: 99 VDKVSKVAVKFVYLGIGSGIASFLQVTCWMITGERQATRIRGLYLKTILRQDVAFFDNET 158
V+ VSKV +KFVYLG+G+ A+FLQV CWMITGERQA RIR LYLKTILRQD+ FFD ET
Sbjct: 63 VEIVSKVCLKFVYLGLGTLGAAFLQVACWMITGERQAARIRSLYLKTILRQDIGFFDVET 122
Query: 159 NTGEVVGRMSGDTVLIQDAMGEKVGKFLQLMATFLGGFLIAFIKGWLLTLVMLSSIPLLA 218
+TGEVVGRMSGDTVLI +AMGEKVGKF+QL+ATF+GGF++AF+KGWLLTLVML SIPLLA
Sbjct: 123 STGEVVGRMSGDTVLILEAMGEKVGKFIQLIATFVGGFVLAFVKGWLLTLVMLVSIPLLA 182
Query: 219 MSGGVMAIMISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYK 278
++G M I++++ SSR Q AYAKA++VVEQT+GSIRTVASFTGEKQAM +Y++F+ AY+
Sbjct: 183 IAGAAMPIIVTRASSREQAAYAKASTVVEQTLGSIRTVASFTGEKQAMKSYREFINLAYR 242
Query: 279 SGVQEGLAAGIGLGMVMLIVFCSYALSVWYGGKLILEEGYNGGQVVNVMVAVLTGSMSLG 338
+ V++G + G+GLG+V + FCSYAL++W+GG++IL++GY GG+VVNVMV V+ SMSLG
Sbjct: 243 ASVKQGFSMGLGLGVVFFVFFCSYALAIWFGGEMILKKGYTGGEVVNVMVTVVASSMSLG 302
Query: 339 EASPCLSAFGAGQAAAFKMFETINRKPEIDAYDTKGKILDDIRGDIELRDVYFSYPARPN 398
+ +PCL+AF AG+AAA+KMFETI RKP IDA+D GK+L+DIRG+IELRDV FSYPARP
Sbjct: 303 QTTPCLTAFAAGKAAAYKMFETIERKPSIDAFDLNGKVLEDIRGEIELRDVCFSYPARPM 362
Query: 399 EQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWI 458
E++F GFS+ I SG TAALVG+SGSGKS+VISLIERFYDP +G VLIDG+NLKEFQL+WI
Sbjct: 363 EEVFGGFSLLIPSGATAALVGESGSGKSSVISLIERFYDPSSGSVLIDGVNLKEFQLKWI 422
Query: 459 RKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGE 518
R KIGLVSQEPVLF+ SI +NI YGK++AT EEI+ A +LANAA FIDKLP+G++TLVGE
Sbjct: 423 RGKIGLVSQEPVLFSSSIMENIGYGKENATVEEIQAAAKLANAANFIDKLPRGLETLVGE 482
Query: 519 HGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVA 578
HGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESE+VVQEALDR+M++RTTVIVA
Sbjct: 483 HGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDRVMMSRTTVIVA 542
Query: 579 HRLSTVRNADMIAVIHRGKIVEKGTHSKLVEDPEGAYSQLIRLQEANKESEQTIDGQRKS 638
HRLSTVRNADMIAVIHRGKIVE+G+HS+L++D EGAY+QLIRLQ+ KE ++
Sbjct: 543 HRLSTVRNADMIAVIHRGKIVEEGSHSELLKDHEGAYAQLIRLQKIKKEP-------KRL 595
Query: 639 EISMESLRHSSHRMSLRRSISRGSSIGNSSR----HSISVSFGLPSGQFADTALGEPAGP 694
E S E LR RSI+RGSS +R S+SV GL LG
Sbjct: 596 ESSNE-LRD--------RSINRGSSRNIRTRVHDDDSVSV-LGL---------LGRQEN- 635
Query: 695 SQPTEEVAPEVPTRRLAYLNKPEIPVILAGTIAAMANGVILPIYGLLISSVIETFFKPPH 754
++ + E + V R+A LNKPE +++ GT+ NG I PI+G+L + VIE FFKPPH
Sbjct: 636 TEISREQSRNVSITRIAALNKPETTILILGTLLGAVNGTIFPIFGILFAKVIEAFFKPPH 695
Query: 755 ELKKDSRFWALIYLALGAGSFLLSPAQSYFFAVAGNKLIQRIRSMCFEKVIHMEVSWFDE 814
++K+DSRFW++I++ LG S ++ P +Y FAVAG +LIQRIR MCFEKV+HMEV WFD+
Sbjct: 696 DMKRDSRFWSMIFVLLGVASLIVYPMHTYLFAVAGGRLIQRIRVMCFEKVVHMEVGWFDD 755
Query: 815 PEHSSGAIGARLSADAASVRALVGDALARIVQNISTAAAGLIIAFTASWQLALIILVMLP 874
PE+SSG IG+RLSADAA ++ LVGD+L+ V+N + A +GLIIAFTASW+LA+IILVM+P
Sbjct: 756 PENSSGTIGSRLSADAALIKTLVGDSLSLSVKNAAAAVSGLIIAFTASWKLAVIILVMIP 815
Query: 875 LIGVSGYTQMKFMKGFSADAKMKYEEASQVANDAVGSIRTVASFCAEEKVMQLYKKKCEA 934
LIG++GY Q+KF+KGF+ADAK KYEEASQVANDAVGSIRTVASFCAEEKVM++YKK+CE
Sbjct: 816 LIGINGYLQIKFIKGFTADAKAKYEEASQVANDAVGSIRTVASFCAEEKVMEMYKKRCED 875
Query: 935 PMKTGIRQGMVSGGGFGASFFLLFAFYAASFYAGARLVEDGKATFSDVFKVFFSLTMTAI 994
+K+GI+QG++SG GFG SFF+L++ YA+ FY GARLV+ G+ F+DVF+VF +LTMTAI
Sbjct: 876 TIKSGIKQGLISGVGFGISFFVLYSVYASCFYVGARLVKAGRTNFNDVFQVFLALTMTAI 935
Query: 995 GISQSSSFSSDSNKAKSAAASIFAIIDRESKIDPSDESGTILEDVKGEIELHHVSFKYPS 1054
GISQ+SSF+ DS+KAK AAASIF IID +S ID DESG +LE+VKG+IEL H+SF Y +
Sbjct: 936 GISQASSFAPDSSKAKGAAASIFGIIDGKSMIDSRDESGLVLENVKGDIELCHISFTYQT 995
Query: 1055 RPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQL 1114
RPDVQ+FRDL IRAG+TVALVGESGSGKSTV+SLLQRFYDPD+GHITLD VE++KLQL
Sbjct: 996 RPDVQIFRDLCFAIRAGQTVALVGESGSGKSTVISLLQRFYDPDSGHITLDRVELKKLQL 1055
Query: 1115 KWLRQQMGLVSQEPVLFNDTIRANIAYGKGGD-ATEAEIQAASEMANAHKFICSLQQ 1170
KW+RQQMGLV QEPVLFNDTIR+NIAYGKGGD A+EAEI AA+E+ANAH FI S+QQ
Sbjct: 1056 KWVRQQMGLVGQEPVLFNDTIRSNIAYGKGGDEASEAEIIAAAELANAHGFISSIQQ 1112
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9M0M2|AB9B_ARATH ABC transporter B family member 9 OS=Arabidopsis thaliana GN=ABCB9 PE=3 SV=2 | Back alignment and function description |
|---|
Score = 1417 bits (3668), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 720/1150 (62%), Positives = 889/1150 (77%), Gaps = 39/1150 (3%)
Query: 29 EHDSEKGKQTEKTESVPFYKLFTFADSADTALMIIGSIGAIGNGLCLPLMTLLFGDLINT 88
E S K K + V F+KLF+FAD D LM +G+I A GNGL P MTL+FG LIN
Sbjct: 2 EEKSSK-KNDGGNQKVSFFKLFSFADKTDVVLMTVGTIAAAGNGLTQPFMTLIFGQLINA 60
Query: 89 FGDNQNNSETVDKVSKVAVKFVYLGIGSGIASFLQVTCWMITGERQATRIRGLYLKTILR 148
FG + V +V KVAVKF+YL + S + +FLQV+CWM+TGERQ+ IRGLYLKTILR
Sbjct: 61 FG-TTDPDHMVREVWKVAVKFIYLAVYSCVVAFLQVSCWMVTGERQSATIRGLYLKTILR 119
Query: 149 QDVAFFDNETNTGEVVGRMSGDTVLIQDAMGEKVGKFLQLMATFLGGFLIAFIKGWLLTL 208
QD+ +FD ETNTGEV+GRMSGDT+LIQDAMGEKVGKF QL+ TFLGGF IAF KG LL
Sbjct: 120 QDIGYFDTETNTGEVIGRMSGDTILIQDAMGEKVGKFTQLLCTFLGGFAIAFYKGPLLAG 179
Query: 209 VMLSSIPLLAMSGGVMAIMISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQAMSN 268
V+ S IPL+ ++G M++++SKM+ RGQ AYA+A +VVEQT+G+IRTV +FTGEKQA
Sbjct: 180 VLCSCIPLIVIAGAAMSLIMSKMAGRGQVAYAEAGNVVEQTVGAIRTVVAFTGEKQATEK 239
Query: 269 YKKFLVTAYKSGVQEGLAAGIGLGMVMLIVFCSYALSVWYGGKLILEEGYNGGQVVNVMV 328
Y+ L AYK+ VQ+GL +G GLG ++ ++FCSY L+VWYG KLI+E+GYNGGQV+NV+
Sbjct: 240 YESKLEIAYKTVVQQGLISGFGLGTMLAVIFCSYGLAVWYGAKLIMEKGYNGGQVINVIF 299
Query: 329 AVLTGSMSLGEASPCLSAFGAGQAAAFKMFETINRKPEIDAYDTKGKILDDIRGDIELRD 388
AVLTG MSLG+ SP L+AF AG+AAAFKMFETI R P+IDAYD G +L+DIRGDIEL+D
Sbjct: 300 AVLTGGMSLGQTSPSLNAFAAGRAAAFKMFETIKRSPKIDAYDMSGSVLEDIRGDIELKD 359
Query: 389 VYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGI 448
VYF YPARP+ QIF+GFS+ + +G T ALVGQSGSGKSTVISLIERFYDP++G+VLID I
Sbjct: 360 VYFRYPARPDVQIFAGFSLFVPNGKTVALVGQSGSGKSTVISLIERFYDPESGQVLIDNI 419
Query: 449 NLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKL 508
+LK+ QL+WIR KIGLVSQEPVLF +IK+NIAYGK+DAT +EIR A ELANAAKFIDKL
Sbjct: 420 DLKKLQLKWIRSKIGLVSQEPVLFATTIKENIAYGKEDATDQEIRTAIELANAAKFIDKL 479
Query: 509 PQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRI 568
PQG+DT+VGEHGTQ+SGGQKQR+AIARAILK+P+ILLLDEATSALDAESE++VQ+AL +
Sbjct: 480 PQGLDTMVGEHGTQMSGGQKQRLAIARAILKNPKILLLDEATSALDAESERIVQDALVNL 539
Query: 569 MVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVEDPEGAYSQLIRLQEANKES 628
M NRTTV+VAHRL+T+R AD+IAV+H+GKIVEKGTH ++++DPEGAYSQL+RLQE +K
Sbjct: 540 MSNRTTVVVAHRLTTIRTADVIAVVHQGKIVEKGTHDEMIQDPEGAYSQLVRLQEGSK-- 597
Query: 629 EQTIDGQRKSEISMESLRHSSHRMSLRRSISRGSSIGNSSRHSISVSFGLPSGQFADTAL 688
E+ + +R E S++ R S R+S S + + S SF L S F
Sbjct: 598 EEATESER-PETSLDVERSGSLRLS-----SAMRRSVSRNSSSSRHSFSLASNMFF---- 647
Query: 689 GEPAGPSQPTEEVAPE--------VPTRRLAYLNKPEIPVILAGTIAAMANGVILPIYGL 740
P T+E+ E V +RLA+LNKPEIPV++ G+IAAM +G + PI+GL
Sbjct: 648 --PGVNVNQTDEMEDEENNVRHKKVSLKRLAHLNKPEIPVLVLGSIAAMVHGTVFPIFGL 705
Query: 741 LISSVIETFFKPPHELKKDSRFWALIYLALGAGSFLLSPAQSYFFAVAGNKLIQRIRSMC 800
L+SS I F++P LKKDS FWALIY+ALG +F++ P Q+YFF +AG KLI+RIRSMC
Sbjct: 706 LLSSSINMFYEPAKILKKDSHFWALIYIALGLTNFVMIPVQNYFFGIAGGKLIKRIRSMC 765
Query: 801 FEKVIHMEVSWFDEPEHSSGAIGARLSADAASVRALVGDALARIVQNISTAAAGLIIAFT 860
F+KV+H E+SWFD D A+ R+LVGDALA IVQNI+T GLIIAFT
Sbjct: 766 FDKVVHQEISWFD---------------DTANSRSLVGDALALIVQNIATVTTGLIIAFT 810
Query: 861 ASWQLALIILVMLPLIGVSGYTQMKFMKGFSADAKMKYEEASQVANDAVGSIRTVASFCA 920
A+W LALI+L + P I + GY Q KF+ GFSADAK YEEASQVANDAV SIRTVASFCA
Sbjct: 811 ANWILALIVLALSPFIVIQGYAQTKFLTGFSADAKAMYEEASQVANDAVSSIRTVASFCA 870
Query: 921 EEKVMQLYKKKCEAPMKTGIRQGMVSGGGFGASFFLLFAFYAASFYAGARLVEDGKATFS 980
EEKVM LY++KC+ P K G+R G++SG GFG SFF L+ F +GA L++ GKATF
Sbjct: 871 EEKVMDLYQQKCDGPKKNGVRLGLLSGAGFGFSFFFLYCINCVCFVSGAGLIQIGKATFG 930
Query: 981 DVFKVFFSLTMTAIGISQSSSFSSDSNKAKSAAASIFAIIDRESKIDPSDESGTILEDVK 1040
+VFKVFF+LT+ AIG+SQ+S+ + DSNKAK +AASIF I+D KID S + GT L++V
Sbjct: 931 EVFKVFFALTIMAIGVSQTSAMAPDSNKAKDSAASIFDILDSTPKIDSSSDEGTTLQNVN 990
Query: 1041 GEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAG 1100
G+IE HVSF+YP RPDVQ+FRDL L I +GKTVALVGESGSGKSTV+S+++RFY+PD+G
Sbjct: 991 GDIEFRHVSFRYPMRPDVQIFRDLCLTIPSGKTVALVGESGSGKSTVISMIERFYNPDSG 1050
Query: 1101 HITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMAN 1160
I +D VEIQ +L WLRQQMGLVSQEP+LFN+TIR+NIAYGK G ATE EI AA++ AN
Sbjct: 1051 KILIDQVEIQTFKLSWLRQQMGLVSQEPILFNETIRSNIAYGKTGGATEEEIIAAAKAAN 1110
Query: 1161 AHKFICSLQQ 1170
AH FI SL Q
Sbjct: 1111 AHNFISSLPQ 1120
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FHF1|AB7B_ARATH ABC transporter B family member 7 OS=Arabidopsis thaliana GN=ABCB7 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 1386 bits (3588), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 664/1132 (58%), Positives = 878/1132 (77%), Gaps = 18/1132 (1%)
Query: 42 ESVPFYKLFTFADSADTALMIIGSIGAIGNGLCLPLMTLLFGDLINTFGDNQNNSETVDK 101
+ + FYKLFTFAD D LM+IG++ A+ NGL P M++L G LIN FG + ++ +
Sbjct: 16 QRIAFYKLFTFADRYDIVLMVIGTLSAMANGLTQPFMSILMGQLINVFGFS-DHDHVFKE 74
Query: 102 VSKVAVKFVYLGIGSGIASFLQVTCWMITGERQATRIRGLYLKTILRQDVAFFDNETNTG 161
VSKVAVKF+YL +G+ SFLQV+CWM+TGERQ+TRIR LYLKTILRQD+ FFD ETNTG
Sbjct: 75 VSKVAVKFLYLAAYAGVVSFLQVSCWMVTGERQSTRIRRLYLKTILRQDIGFFDTETNTG 134
Query: 162 EVVGRMSGDTVLIQDAMGEKVGKFLQLMATFLGGFLIAFIKGWLLTLVMLSSIPLLAMSG 221
EV+GRMSGDT+LIQD+MGEKVGKF QL+++F+GGF +AFI G LTL +L +PL+ +G
Sbjct: 135 EVIGRMSGDTILIQDSMGEKVGKFTQLVSSFVGGFTVAFIVGMKLTLALLPCVPLIVGTG 194
Query: 222 GVMAIMISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYKSGV 281
G M ++SK + R Q AY +A +VV+Q +GSIRTV +FTGEKQ+M Y+K L AYKS V
Sbjct: 195 GAMTYIMSKKAQRVQLAYTEAGNVVQQAVGSIRTVVAFTGEKQSMGKYEKKLEIAYKSMV 254
Query: 282 QEGLAAGIGLGMVMLIVFCSYALSVWYGGKLILEEGYNGGQVVNVMVAVLTGSMSLGEAS 341
++GL +G+G+G++M++V+C+Y ++WYG + I+E+GY GGQV+NV+ ++LTG M+LG+
Sbjct: 255 KQGLYSGLGIGIMMVVVYCTYGFAIWYGARQIIEKGYTGGQVMNVITSILTGGMALGQTL 314
Query: 342 PCLSAFGAGQAAAFKMFETINRKPEIDAYDTKGKILDDIRGDIELRDVYFSYPARPNEQI 401
P L++F AG AAA+KMFETI RKP+IDAYD G++L++I+GDIELRDVYF YPARP+ QI
Sbjct: 315 PSLNSFAAGTAAAYKMFETIKRKPKIDAYDMSGEVLEEIKGDIELRDVYFRYPARPDVQI 374
Query: 402 FSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKK 461
F GFS+++ +G T ALVGQSGSGKSTVISLIERFYDP++GEVLIDGI+LK+FQ++WIR K
Sbjct: 375 FVGFSLTVPNGMTVALVGQSGSGKSTVISLIERFYDPESGEVLIDGIDLKKFQVKWIRSK 434
Query: 462 IGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGT 521
IGLVSQEP+LF +I++NI YGK DA+ +EIR A +LANA+ FIDKLPQG++T+VGEHGT
Sbjct: 435 IGLVSQEPILFATTIRENIVYGKKDASDQEIRTALKLANASNFIDKLPQGLETMVGEHGT 494
Query: 522 QLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRL 581
QLSGGQKQRIAIARAILK+P+ILLLDEATSALDAESE++VQ+AL ++M++RTTV+VAHRL
Sbjct: 495 QLSGGQKQRIAIARAILKNPKILLLDEATSALDAESERIVQDALVKLMLSRTTVVVAHRL 554
Query: 582 STVRNADMIAVIHRGKIVEKGTHSKLVEDPEGAYSQLIRLQEANKESEQTIDGQRKSEIS 641
+T+R ADMIAV+ +GK++EKGTH ++++DPEG YSQL+RLQE +K+ E K E+S
Sbjct: 555 TTIRTADMIAVVQQGKVIEKGTHDEMIKDPEGTYSQLVRLQEGSKKEEAIDKEPEKCEMS 614
Query: 642 MESLRHSSHRMSLRRSISRGSSIGNSSRHSISVSFGLPSGQFAD-TALGEPAGPSQPTEE 700
+E I S +++ GLP D T S T+
Sbjct: 615 LE--------------IESSDSQNGIHSGTLTSPSGLPGVISLDQTEEFHENISSTKTQT 660
Query: 701 V--APEVPTRRLAYLNKPEIPVILAGTIAAMANGVILPIYGLLISSVIETFFKPPHELKK 758
V EV RRLA+LNKPEI V+L G++AA+ +G++ P+ GLL+S I FF+P ++LK
Sbjct: 661 VKKGKEVSLRRLAHLNKPEISVLLLGSLAAVIHGIVFPVQGLLLSRTIRIFFEPSNKLKN 720
Query: 759 DSRFWALIYLALGAGSFLLSPAQSYFFAVAGNKLIQRIRSMCFEKVIHMEVSWFDEPEHS 818
DS FWALI++ALG ++ P Q+Y FA+AG KLI+RIRS+ F++V+H ++SWFD+ ++S
Sbjct: 721 DSLFWALIFVALGLTDLIVIPLQNYLFAIAGAKLIKRIRSLSFDRVLHQDISWFDDTKNS 780
Query: 819 SGAIGARLSADAASVRALVGDALARIVQNISTAAAGLIIAFTASWQLALIILVMLPLIGV 878
SG IGARLS DA++V+++VGD L I+QN++T IIAFTA+W LAL+ L++ P++
Sbjct: 781 SGVIGARLSTDASTVKSIVGDVLGLIMQNMATIIGAFIIAFTANWLLALMALLVAPVMFF 840
Query: 879 SGYTQMKFMKGFSADAKMKYEEASQVANDAVGSIRTVASFCAEEKVMQLYKKKCEAPMKT 938
GY Q+KF+ GF A A+ KYEEASQVA+DAV SIRTVASFCAE+KVM LY++KC+ P +
Sbjct: 841 QGYYQIKFITGFGAKARGKYEEASQVASDAVSSIRTVASFCAEDKVMDLYQEKCDEPKQQ 900
Query: 939 GIRQGMVSGGGFGASFFLLFAFYAASFYAGARLVEDGKATFSDVFKVFFSLTMTAIGISQ 998
G + G+VSG +G S+ L+ + F G+ L+++ +ATF + F+VFF+LT+TA+G++Q
Sbjct: 901 GFKLGLVSGLCYGGSYLALYVIESVCFLGGSWLIQNRRATFGEFFQVFFALTLTAVGVTQ 960
Query: 999 SSSFSSDSNKAKSAAASIFAIIDRESKIDPSDESGTILEDVKGEIELHHVSFKYPSRPDV 1058
+S+ + D NKAK +AASIF I+D + KID S E GTIL V G+IEL HVSF+YP RPD+
Sbjct: 961 TSTMAPDINKAKDSAASIFDILDSKPKIDSSSEKGTILPIVHGDIELQHVSFRYPMRPDI 1020
Query: 1059 QVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLR 1118
Q+F DL L I +G+TVALVGESGSGKSTV+SLL+RFYDPD+G I LD VEIQ L+L WLR
Sbjct: 1021 QIFSDLCLTISSGQTVALVGESGSGKSTVISLLERFYDPDSGKILLDQVEIQSLKLSWLR 1080
Query: 1119 QQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQ 1170
+QMGLVSQEPVLFN+TI +NIAYGK G ATE EI A++ AN H FI SL Q
Sbjct: 1081 EQMGLVSQEPVLFNETIGSNIAYGKIGGATEEEIITAAKAANVHNFISSLPQ 1132
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LJX0|AB19B_ARATH ABC transporter B family member 19 OS=Arabidopsis thaliana GN=ABCB19 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 957 bits (2475), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 495/1139 (43%), Positives = 729/1139 (64%), Gaps = 24/1139 (2%)
Query: 37 QTEKTESVPFYKLFTFADSADTALMIIGSIGAIGNGLCLPLMTLLFGDLINTFGDNQNN- 95
+ +K +S+PF+KLF+FAD D LM +GS+GAI +G +P+ LLFG ++N FG NQ +
Sbjct: 17 EKKKEQSLPFFKLFSFADKFDYLLMFVGSLGAIVHGSSMPVFFLLFGQMVNGFGKNQMDL 76
Query: 96 SETVDKVSKVAVKFVYLGIGSGIASFLQVTCWMITGERQATRIRGLYLKTILRQDVAFFD 155
+ V +VS+ ++ FVYLG+ +S+ ++ CWM +GERQ +R YL+ +L+QDV FFD
Sbjct: 77 HQMVHEVSRYSLYFVYLGLVVCFSSYAEIACWMYSGERQVAALRKKYLEAVLKQDVGFFD 136
Query: 156 NETNTGEVVGRMSGDTVLIQDAMGEKVGKFLQLMATFLGGFLIAFIKGWLLTLVMLSSIP 215
+ TG++V +S DT+L+QDA+ EKVG F+ ++TFL G ++ F+ W L L+ ++ IP
Sbjct: 137 TDARTGDIVFSVSTDTLLVQDAISEKVGNFIHYLSTFLAGLVVGFVSAWKLALLSVAVIP 196
Query: 216 LLAMSGGVMAIMISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVT 275
+A +GG+ A ++ ++S+ + +YA A + EQ I +RTV S+ GE +A++ Y +
Sbjct: 197 GIAFAGGLYAYTLTGITSKSRESYANAGVIAEQAIAQVRTVYSYVGESKALNAYSDAIQY 256
Query: 276 AYKSGVQEGLAAGIGLGMVMLIVFCSYALSVWYGGKLILEEGYNGGQVVNVMVAVLTGSM 335
K G + G+A G+GLG I S+AL WY G I +GG+ + + + G M
Sbjct: 257 TLKLGYKAGMAKGLGLGCTYGIACMSWALVFWYAGVFIRNGQTDGGKAFTAIFSAIVGGM 316
Query: 336 SLGEASPCLSAFGAGQAAAFKMFETINRKPEIDAYDTKGKILDDIRGDIELRDVYFSYPA 395
SLG++ L AF G+AA +K+ E IN++P I GK LD + G+IE +DV FSYP+
Sbjct: 317 SLGQSFSNLGAFSKGKAAGYKLMEIINQRPTIIQDPLDGKCLDQVHGNIEFKDVTFSYPS 376
Query: 396 RPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQL 455
RP+ IF F+I SG T A+VG SGSGKSTV+SLIERFYDP +G++L+DG+ +K QL
Sbjct: 377 RPDVMIFRNFNIFFPSGKTVAVVGGSGSGKSTVVSLIERFYDPNSGQILLDGVEIKTLQL 436
Query: 456 QWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTL 515
+++R++IGLV+QEP LF +I +NI YGK DAT E+ A ANA FI LP+G DT
Sbjct: 437 KFLREQIGLVNQEPALFATTILENILYGKPDATMVEVEAAASAANAHSFITLLPKGYDTQ 496
Query: 516 VGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTV 575
VGE G QLSGGQKQRIAIARA+LKDP+ILLLDEATSALDA SE +VQEALDR+MV RTTV
Sbjct: 497 VGERGVQLSGGQKQRIAIARAMLKDPKILLLDEATSALDASSESIVQEALDRVMVGRTTV 556
Query: 576 IVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVEDPEGAYSQLIRLQEANKESEQTIDGQ 635
+VAHRL T+RN D IAVI +G++VE GTH +L+ GAY+ LIR QE + +
Sbjct: 557 VVAHRLCTIRNVDSIAVIQQGQVVETGTHEELIAK-SGAYASLIRFQEMVGTRDFSNPST 615
Query: 636 RKSEISMESLRHSSHRMSLRRSISRGSSIGNSSRHSISVSFGLPSGQFADTALGEPAGPS 695
R++ + S S+ +SLR R ++S+ +G AD + +
Sbjct: 616 RRTRSTRLSHSLSTKSLSLRSGSLR------------NLSYSYSTG--ADGRIEMISNAE 661
Query: 696 QPTEEVAPEVPTRRLAYLNKPEIPVILAGTIAAMANGVILPIYGLLISSVIETFFKPPHE 755
+ APE RL LN PE P + G + ++ +G I P + +++S++IE F+ ++
Sbjct: 662 TDRKTRAPENYFYRLLKLNSPEWPYSIMGAVGSILSGFIGPTFAIVMSNMIEVFYYTDYD 721
Query: 756 -LKKDSRFWALIYLALG---AGSFLLSPAQSYFFAVAGNKLIQRIRSMCFEKVIHMEVSW 811
+++ ++ + IY+ G G++L+ Q YFF++ G L R+R M ++ EV W
Sbjct: 722 SMERKTKEYVFIYIGAGLYAVGAYLI---QHYFFSIMGENLTTRVRRMMLSAILRNEVGW 778
Query: 812 FDEPEHSSGAIGARLSADAASVRALVGDALARIVQNISTAAAGLIIAFTASWQLALIILV 871
FDE EH+S I ARL+ DAA V++ + + ++ I+QN+++ I+AF W+++L+IL
Sbjct: 779 FDEDEHNSSLIAARLATDAADVKSAIAERISVILQNMTSLLTSFIVAFIVEWRVSLLILG 838
Query: 872 MLPLIGVSGYTQMKFMKGFSADAKMKYEEASQVANDAVGSIRTVASFCAEEKVMQLYKKK 931
PL+ ++ + Q +KGF+ D + + S +A + V +IRTVA+F A+ K++ L+ +
Sbjct: 839 TFPLLVLANFAQQLSLKGFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNAQSKILSLFCHE 898
Query: 932 CEAPMKTGIRQGMVSGGGFGASFFLLFAFYAASFYAGARLVEDGKATFSDVFKVFFSLTM 991
P K + + SG FG S L+ A + GA LV G +TFS V KVF L +
Sbjct: 899 LRVPQKRSLYRSQTSGFLFGLSQLALYGSEALILWYGAHLVSKGVSTFSKVIKVFVVLVI 958
Query: 992 TAIGISQSSSFSSDSNKAKSAAASIFAIIDRESKIDPSDESGTILEDVKGEIELHHVSFK 1051
TA ++++ S + + + A S+F+++DR+++IDP D +E ++G+IE HV F
Sbjct: 959 TANSVAETVSLAPEIIRGGEAVGSVFSVLDRQTRIDPDDADADPVETIRGDIEFRHVDFA 1018
Query: 1052 YPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQK 1111
YPSRPDV VFRD NL+IRAG + ALVG SGSGKS+V+++++RFYDP AG + +DG +I++
Sbjct: 1019 YPSRPDVMVFRDFNLRIRAGHSQALVGASGSGKSSVIAMIERFYDPLAGKVMIDGKDIRR 1078
Query: 1112 LQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQ 1170
L LK LR ++GLV QEP LF TI NIAYGK G ATE+E+ A+ ANAH FI L +
Sbjct: 1079 LNLKSLRLKIGLVQQEPALFAATIFDNIAYGKDG-ATESEVIDAARAANAHGFISGLPE 1136
|
Auxin efflux transporter that acts as a negative regulator of light signaling to promote hypocotyl elongation. Mediates the accumulation of chlorophyll and anthocyanin, as well as the expression of genes in response to light. Participates in auxin efflux and thus regulates the polar auxin basipetal transport (from auxin-producing leaves to auxin-sensitive tissues, and from root tips to root elongating zone). Involved in divers auxin-mediated responses including gravitropism, phototropism and lateral root formation. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q54BT3|ABCB2_DICDI ABC transporter B family member 2 OS=Dictyostelium discoideum GN=abcB2 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 954 bits (2466), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 509/1212 (41%), Positives = 759/1212 (62%), Gaps = 69/1212 (5%)
Query: 20 GKDSSMSGNEHDSEKGKQTEKTE-----SVPFYKLFTFADSADTALMIIGSIGAIGNGLC 74
G DS + + S+K + EK E VPF+ LF FA D LMIIG+IGA+ NG+
Sbjct: 94 GGDSVKTLSTTQSKKLDEGEKKEGEVGPQVPFFSLFRFAKPFDILLMIIGTIGALANGVS 153
Query: 75 LPLMTLLFGDLINTFGDNQ---NNSETVDKVSKVAVKFVYLGIGSGIASFLQVTCWMITG 131
+P ++++FG L+N+F N + V+ V+ A+ F+Y+G G + S+++V WM+ G
Sbjct: 154 MPAISIVFGRLMNSFSPENLADPNFDLVETVTSNAMYFIYIGCGVFVCSYVEVAFWMLAG 213
Query: 132 ERQATRIRGLYLKTILRQDVAFFDNETNTGEVVGRMSGDTVLIQDAMGEKVGKFLQLMAT 191
ERQA R R YLK IL+Q++ ++D T + E+ R+S DT+L Q+A+GEK+G FL +T
Sbjct: 214 ERQAVRCRKAYLKAILKQEIGWYD-VTKSSELSTRISSDTLLFQEAIGEKIGNFLHHTST 272
Query: 192 FLGGFLIAFIKGWLLTLVMLSSIPLLAMSGGVMAIMISKMSSRGQGAYAKAASVVEQTIG 251
F+ GF++ F+ GW LTLV+ + PL+A +G M M++ ++ +GQ AYAKA V E+ IG
Sbjct: 273 FICGFIVGFVNGWQLTLVIFALTPLIAAAGAFMTKMMADLTKKGQDAYAKAGGVAEEKIG 332
Query: 252 SIRTVASFTGEKQAMSNYKKFLVTAYKSGVQEGLAAGIGLGMVMLIVFCSYALSVWYGGK 311
SIRTV++F+GE + Y + L A G ++G+ GIG+G+V L++F +Y+LS WYGGK
Sbjct: 333 SIRTVSTFSGEPFEVKRYTERLKEALDIGTKKGIMNGIGIGLVFLVLFGTYSLSFWYGGK 392
Query: 312 LILEEGYN--------GGQVVNVMVAVLTGSMSLGEASPCLSAFGAGQAAAFKMFETINR 363
LI++ +N GG V+ V +V+ G+M+LG+ASP +++F G+ AAFK++E ++R
Sbjct: 393 LIVDRKWNPVPDRPWQGGDVLTVFFSVIMGAMALGQASPNVASFANGRGAAFKIYEVVDR 452
Query: 364 KPEIDAYDTKGKILDD-IRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSG 422
+ID + T+G+ +++ ++G+IE R++ FSYP+RP+ +IF+ F+++I GTT ALVG SG
Sbjct: 453 NSKIDPFSTEGRSIEETVQGNIEYRNIGFSYPSRPDVKIFNNFNLTIKKGTTVALVGDSG 512
Query: 423 SGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAY 482
GKS+VI L+ERFYDP GEV +DG N+KE + +R+ IGLVSQEPVLF SI +NI Y
Sbjct: 513 GGKSSVIGLLERFYDPDEGEVYLDGTNIKEINIHSLRRNIGLVSQEPVLFANSIAENIRY 572
Query: 483 GKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPR 542
G ++AT ++I A + ANA FI LP+G DT VGE G Q+SGGQKQRIAIARA++KDP+
Sbjct: 573 GNENATMDQIIEACKTANAHDFISALPEGYDTQVGEKGVQMSGGQKQRIAIARAMIKDPK 632
Query: 543 ILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKG 602
ILLLDEATSALD+++E +VQ++++++M+ RTT+++AHRLST+++AD IAV+ G IVE G
Sbjct: 633 ILLLDEATSALDSQNELLVQQSIEKLMIGRTTIVIAHRLSTIQDADQIAVVKGGAIVEIG 692
Query: 603 THSKLVEDPEGAYSQLIRLQEANKESEQTIDGQRKSEISMESLRHS--SHRMSLRRSISR 660
TH +L G Y+QL+ Q+ + ++ E S + ++ +S+ +SI
Sbjct: 693 THPELYA-LNGVYTQLVNRQQKGGDDGDKKKKKKSKESSKDESNNNIGPSSISIDKSIQ- 750
Query: 661 GSSIGNSSRHSISVSFGLPSGQFADTALGEPAGPSQPTEEVAPEVPTRRLAYLNKPEIPV 720
SIG S + ++ G D + + VP R+ L++ + P
Sbjct: 751 --SIGADSLETSTI------GLVNDN--DNKKKKKKEKKPQEKSVPIGRILKLSRGDWPH 800
Query: 721 ILAGTIAAMANGVILPIYGLLISSVIETF-FKPPHELKKDSRFWALIYLALGAGSFLLSP 779
L G + A NG I+P++ ++ S ++ F + EL + SR AL ++ L + L +
Sbjct: 801 FLIGLVGATLNGAIMPVFSIIFSEILGIFQEQDTDELTRRSRNMALWFILLAVVAALANF 860
Query: 780 AQSYFFAVAGNKLIQRIRSMCFEKVIHMEVSWFDEPEHSSGAIGARLSADAASVRALVGD 839
Q Y F G KL +R + FE ++ ++ WFD E+S+G + A L+ +A V+ +
Sbjct: 861 IQIYCFTFIGEKLTFNLRRLSFESIMRQDIGWFDLTENSTGRLTANLATEATLVQGMTSQ 920
Query: 840 ALARIVQNISTAAAGLIIAFTASWQLALIILVMLPLIGVSGYTQMKFMKGFSADAKMKYE 899
L ++QNI T AGL+IAF + W+L L++L +P+IG +G +M F +GFS K Y
Sbjct: 921 RLGLLIQNIVTIVAGLVIAFVSGWKLTLVVLACVPVIGFAGKVEMDFFQGFSQKGKEAYA 980
Query: 900 EASQVANDAVGSIRTVASFCAEEKVMQLYKKKCEAPMKTGIRQGMVSGGGFGASFFLLFA 959
E QVA++A+G IRTV+SF E K+++ +++ + P++ R+ VSG FG S LF
Sbjct: 981 ECGQVASEAIGGIRTVSSFTCENKILEKFRQCLQKPIQMSFRKSNVSGLSFGFSQCTLFF 1040
Query: 960 FYAASFYAGARLVEDGK-------------------------AT----------FSDVFK 984
Y +++ G +LV+ G+ AT FS + +
Sbjct: 1041 IYTLTYWYGGKLVDSGEWPAKESTLETYCYNGEYANIGYTDEATCIKSFTTTEGFSMMMR 1100
Query: 985 VFFSLTMTAIGISQSSSFSSDSNKAKSAAASIFAIIDRESKIDPSDESGTILEDVKGEIE 1044
VFF++ M+A+G+ QS +F D KAK AA +IF++IDR S+IDP + G L + KG+IE
Sbjct: 1101 VFFAIIMSAMGVGQSMAFMPDLGKAKLAAVAIFSLIDRVSEIDPFENKGQTLPEFKGDIE 1160
Query: 1045 LHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITL 1104
+ F YPSRP+ VF+ NL I GK VALVG SG GKS+V+SLL+RFY+P G IT+
Sbjct: 1161 FKDIKFSYPSRPNKAVFQGFNLVIPHGKKVALVGNSGGGKSSVISLLERFYNPSQGSITI 1220
Query: 1105 DGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKF 1164
DGV I+ L L WLR MGLV QEP LF+ TI NI YGK DAT E+ A++ ANAH F
Sbjct: 1221 DGVNIKDLNLNWLRGNMGLVGQEPFLFSGTIFENIIYGK-PDATMDEVVEAAKAANAHTF 1279
Query: 1165 ICSLQQVRTSRL 1176
I SL ++L
Sbjct: 1280 IESLPDAYHTQL 1291
|
Dictyostelium discoideum (taxid: 44689) |
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 1198 | ||||||
| 224130858 | 1294 | multidrug/pheromone exporter, MDR family | 0.970 | 0.898 | 0.765 | 0.0 | |
| 225437787 | 1297 | PREDICTED: ABC transporter B family memb | 0.974 | 0.900 | 0.766 | 0.0 | |
| 224130846 | 1294 | multidrug/pheromone exporter, MDR family | 0.972 | 0.900 | 0.752 | 0.0 | |
| 224064756 | 1224 | multidrug/pheromone exporter, MDR family | 0.922 | 0.902 | 0.788 | 0.0 | |
| 356499544 | 1282 | PREDICTED: ABC transporter B family memb | 0.967 | 0.904 | 0.768 | 0.0 | |
| 356533485 | 1282 | PREDICTED: ABC transporter B family memb | 0.966 | 0.903 | 0.771 | 0.0 | |
| 255548261 | 1269 | multidrug resistance protein 1, 2, putat | 0.953 | 0.899 | 0.755 | 0.0 | |
| 255548259 | 1292 | multidrug resistance protein 1, 2, putat | 0.973 | 0.902 | 0.749 | 0.0 | |
| 357442065 | 1289 | ABC transporter B family member [Medicag | 0.968 | 0.899 | 0.759 | 0.0 | |
| 255548257 | 1292 | multidrug resistance protein 1, 2, putat | 0.974 | 0.903 | 0.746 | 0.0 |
| >gi|224130858|ref|XP_002320942.1| multidrug/pheromone exporter, MDR family, ABC transporter family [Populus trichocarpa] gi|222861715|gb|EEE99257.1| multidrug/pheromone exporter, MDR family, ABC transporter family [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 1853 bits (4799), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 900/1175 (76%), Positives = 1047/1175 (89%), Gaps = 12/1175 (1%)
Query: 2 NGESNSNEASASKSQEEVGKDSSMSGNEHDSEKGKQTEKTESVPFYKLFTFADSADTALM 61
NG+ + +EAS SKS E K S G++ + K K E+T++VPF KLF+FADS D LM
Sbjct: 8 NGDKSMDEASTSKSLEVEEKSSGGRGDQQEPVKSKGDEETKTVPFLKLFSFADSTDILLM 67
Query: 62 IIGSIGAIGNGLCLPLMTLLFGDLINTFGDNQNNSETVDKVSKVAVKFVYLGIGSGIASF 121
I+G+IGA+GNG P+M++LFGDL+N+FG NQNN + VD V+KVA+ FVYLGIGS +A+F
Sbjct: 68 ILGTIGAVGNGASFPIMSILFGDLVNSFGQNQNNKDVVDSVTKVALNFVYLGIGSAVAAF 127
Query: 122 LQVTCWMITGERQATRIRGLYLKTILRQDVAFFDNETNTGEVVGRMSGDTVLIQDAMGEK 181
LQV CWM+TGERQA RIRG YLKTIL+QDVAFFD ETNTGEVVGRMSGDTVLIQDAMGEK
Sbjct: 128 LQVACWMVTGERQAARIRGTYLKTILKQDVAFFDKETNTGEVVGRMSGDTVLIQDAMGEK 187
Query: 182 VGKFLQLMATFLGGFLIAFIKGWLLTLVMLSSIPLLAMSGGVMAIMISKMSSRGQGAYAK 241
VGKF+QL++TF+GGF++AF+KGWLLTLVMLSSIPLL ++G +AI+I++M+SRGQ AYAK
Sbjct: 188 VGKFIQLVSTFIGGFIVAFVKGWLLTLVMLSSIPLLVIAGAGLAIIIARMASRGQTAYAK 247
Query: 242 AASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYKSGVQEGLAAGIGLGMVMLIVFCS 301
AA+VVEQ IGSIRTVASFTGEKQA+SNYKKFL TAY SGVQEG AG+GLG+VML+VFCS
Sbjct: 248 AATVVEQAIGSIRTVASFTGEKQAISNYKKFLATAYNSGVQEGFTAGLGLGIVMLLVFCS 307
Query: 302 YALSVWYGGKLILEEGYNGGQVVNVMVAVLTGSMSLGEASPCLSAFGAGQAAAFKMFETI 361
YAL++W+GGK+ILE+GYNGG V+NV+VAVLTGSMSLG+ASPC+SAF AGQAAA+KMFETI
Sbjct: 308 YALAIWFGGKMILEKGYNGGDVINVIVAVLTGSMSLGQASPCMSAFAAGQAAAYKMFETI 367
Query: 362 NRKPEIDAYDTKGKILDDIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQS 421
NRKPEID+ DT GKILDDI GD+ELRDVYF+YPARP+EQIF+GFS+ I SGTT ALVGQS
Sbjct: 368 NRKPEIDSSDTSGKILDDISGDVELRDVYFTYPARPDEQIFAGFSLFIPSGTTTALVGQS 427
Query: 422 GSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIA 481
GSGKSTVISLIERFYDPQAGEVLIDG NLKEFQL+WIR+KIGLVSQEPVLF SIKDNIA
Sbjct: 428 GSGKSTVISLIERFYDPQAGEVLIDGTNLKEFQLKWIREKIGLVSQEPVLFASSIKDNIA 487
Query: 482 YGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDP 541
YGKD ATTEEIR ATELANAAKFIDKLPQGIDT+VGEHGTQLSGGQKQRIAIARAILKDP
Sbjct: 488 YGKDGATTEEIRAATELANAAKFIDKLPQGIDTMVGEHGTQLSGGQKQRIAIARAILKDP 547
Query: 542 RILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEK 601
RILLLDEATSALDAESE++VQEALDRIMVNRTTVIVAHRLSTV NADMIAVI+RGK+VEK
Sbjct: 548 RILLLDEATSALDAESERIVQEALDRIMVNRTTVIVAHRLSTVINADMIAVIYRGKMVEK 607
Query: 602 GTHSKLVEDPEGAYSQLIRLQEANKESEQTIDGQRKSEISMESLRHSSHRMSLRRSISRG 661
G+HS+L++DPEGAYSQLIRLQE NKES+Q + +KS +S ESLR SS R+SL+RSISRG
Sbjct: 608 GSHSELLKDPEGAYSQLIRLQEVNKESKQETEDPKKSALSAESLRQSSQRISLKRSISRG 667
Query: 662 SS-IGNSSRHSISVSFGLPSGQFADTALGEPAGPS-----QPTEEVAPEVPTRRLAYLNK 715
SS +G+SSR+S+SVSFGLP+G P P+ P ++ P+VP RLAYLNK
Sbjct: 668 SSGVGHSSRNSLSVSFGLPTG------FNVPDNPTSELEVSPQKQQTPDVPISRLAYLNK 721
Query: 716 PEIPVILAGTIAAMANGVILPIYGLLISSVIETFFKPPHELKKDSRFWALIYLALGAGSF 775
PE+PV++AG+IAA+ NGVILPIYG+L+SSVI+ FF+PP EL+KDS+FWAL+++ LG SF
Sbjct: 722 PEVPVLIAGSIAAILNGVILPIYGILLSSVIKIFFEPPDELRKDSKFWALMFMTLGLASF 781
Query: 776 LLSPAQSYFFAVAGNKLIQRIRSMCFEKVIHMEVSWFDEPEHSSGAIGARLSADAASVRA 835
++ P+Q+Y F+VAG KLIQRIRSMCFEKV+HMEV WFDEPEHSSG IGARLSADAA VRA
Sbjct: 782 VVYPSQTYLFSVAGCKLIQRIRSMCFEKVVHMEVGWFDEPEHSSGEIGARLSADAAIVRA 841
Query: 836 LVGDALARIVQNISTAAAGLIIAFTASWQLALIILVMLPLIGVSGYTQMKFMKGFSADAK 895
LVGD+L+++VQNI++A AGL+IAF ASWQLAL+ILV+LPLIG++G+ Q+KFMKGFSADAK
Sbjct: 842 LVGDSLSQLVQNIASAVAGLVIAFAASWQLALVILVLLPLIGLNGFVQVKFMKGFSADAK 901
Query: 896 MKYEEASQVANDAVGSIRTVASFCAEEKVMQLYKKKCEAPMKTGIRQGMVSGGGFGASFF 955
YEEASQVANDAVGSIRTVASFCAEEKVMQLY++KCE PM+TGIRQGM+SG GFG SFF
Sbjct: 902 KMYEEASQVANDAVGSIRTVASFCAEEKVMQLYRRKCEGPMRTGIRQGMISGTGFGVSFF 961
Query: 956 LLFAFYAASFYAGARLVEDGKATFSDVFKVFFSLTMTAIGISQSSSFSSDSNKAKSAAAS 1015
LLF+ YA +FY GA+LV GK F+DVF+VFF+LTM AIGISQSSSF+ DS+KAK AAAS
Sbjct: 962 LLFSVYATTFYVGAQLVRHGKTNFADVFRVFFALTMAAIGISQSSSFAPDSSKAKGAAAS 1021
Query: 1016 IFAIIDRESKIDPSDESGTILEDVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVA 1075
IFAIIDR+SKIDPSDESGT L++VKGEIEL H+SFKYPSRPD+++FRDL+L I +GKTVA
Sbjct: 1022 IFAIIDRKSKIDPSDESGTTLDNVKGEIELRHISFKYPSRPDIEIFRDLSLAIHSGKTVA 1081
Query: 1076 LVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTI 1135
LVGESGSGKSTV+SLLQRFYDPD+GHITLDG++IQ LQLKWLRQQMGLVSQEPVLFN+TI
Sbjct: 1082 LVGESGSGKSTVISLLQRFYDPDSGHITLDGIDIQSLQLKWLRQQMGLVSQEPVLFNETI 1141
Query: 1136 RANIAYGKGGDATEAEIQAASEMANAHKFICSLQQ 1170
RANIAYGK G+ATEAEI AASE+ANAHKFI LQQ
Sbjct: 1142 RANIAYGKEGNATEAEILAASELANAHKFISGLQQ 1176
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225437787|ref|XP_002273987.1| PREDICTED: ABC transporter B family member 11 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1821 bits (4717), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 901/1176 (76%), Positives = 1033/1176 (87%), Gaps = 8/1176 (0%)
Query: 1 MNGESNSNEASASKS---QEEVGKDSSMSGNEHDSEKGKQTEKTESVPFYKLFTFADSAD 57
+NG++ +EA+ S + E K S +G + DSEK K+ K +VPF+KLF+FADS D
Sbjct: 7 LNGKTYMHEATTSSRGALETETVKSSGQNGKQQDSEKSKEEGKPSTVPFHKLFSFADSTD 66
Query: 58 TALMIIGSIGAIGNGLCLPLMTLLFGDLINTFGDNQNNSETVDKVSKVAVKFVYLGIGSG 117
LMI G+IGA GNG+C+PLM +LFGDLI++FG NQNN + VD VSKV++KFVYL +G+G
Sbjct: 67 MLLMITGTIGAAGNGICMPLMAILFGDLIDSFGQNQNNKDVVDIVSKVSLKFVYLAVGAG 126
Query: 118 IASFLQVTCWMITGERQATRIRGLYLKTILRQDVAFFDNETNTGEVVGRMSGDTVLIQDA 177
IA+F QV CWM+TGERQA RIR LYLKTILRQDVAFFD ETNTGEV+GRMSGDTVLIQDA
Sbjct: 127 IAAFFQVACWMVTGERQAARIRSLYLKTILRQDVAFFDKETNTGEVIGRMSGDTVLIQDA 186
Query: 178 MGEKVGKFLQLMATFLGGFLIAFIKGWLLTLVMLSSIPLLAMSGGVMAIMISKMSSRGQG 237
MGEKVGKF+QL++TF+GGF+IAFIKGWLLTLVMLSSIPLL ++GG M++ +SKM++RGQ
Sbjct: 187 MGEKVGKFIQLVSTFIGGFIIAFIKGWLLTLVMLSSIPLLVIAGGAMSLFLSKMATRGQN 246
Query: 238 AYAKAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYKSGVQEGLAAGIGLGMVMLI 297
AYAKAA+VVEQTIGSIRTVASFTGEKQA++ Y +FLV AYKSGV EGLAAG+GLG VM I
Sbjct: 247 AYAKAATVVEQTIGSIRTVASFTGEKQAVTKYNQFLVNAYKSGVFEGLAAGLGLGTVMFI 306
Query: 298 VFCSYALSVWYGGKLILEEGYNGGQVVNVMVAVLTGSMSLGEASPCLSAFGAGQAAAFKM 357
+F SYAL+VW+G K+ILE+GY GG V+NV++AVLTGSMSLG+ASPC+SAF AGQAAAFKM
Sbjct: 307 IFASYALAVWFGAKMILEKGYTGGTVLNVIIAVLTGSMSLGQASPCMSAFAAGQAAAFKM 366
Query: 358 FETINRKPEIDAYDTKGKILDDIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAAL 417
F+TI+RKPEID DTKGK L+DI+G+IELRDVYFSYPARP+EQIFSGFS+SI SGTTAAL
Sbjct: 367 FQTIHRKPEIDVSDTKGKKLEDIQGEIELRDVYFSYPARPDEQIFSGFSLSIPSGTTAAL 426
Query: 418 VGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIK 477
VGQSGSGKSTVISLIERFYDP AGEVLIDGINLKEFQL+WIR KIGLVSQEPVLFT SI+
Sbjct: 427 VGQSGSGKSTVISLIERFYDPLAGEVLIDGINLKEFQLRWIRGKIGLVSQEPVLFTSSIR 486
Query: 478 DNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAI 537
DNIAYGK+ AT EEIR A ELANA+KFIDKLPQG+DT+VGEHGTQLSGGQKQR+AIARAI
Sbjct: 487 DNIAYGKEGATIEEIRAAAELANASKFIDKLPQGLDTMVGEHGTQLSGGQKQRVAIARAI 546
Query: 538 LKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGK 597
LKDPRILLLDEATSALDAESE+VVQEALDRIMVNRTT+IVAHRLSTVRNADMI VIHRGK
Sbjct: 547 LKDPRILLLDEATSALDAESERVVQEALDRIMVNRTTIIVAHRLSTVRNADMIGVIHRGK 606
Query: 598 IVEKGTHSKLVEDPEGAYSQLIRLQEANKESE-QTIDGQRKSEISMESLRHSSHRMSLRR 656
+VEKG+H++L++DPEGAYSQLIRLQE NKESE Q D Q + + S+E R SS RMS R
Sbjct: 607 MVEKGSHTELLKDPEGAYSQLIRLQEVNKESENQATDSQDRPDGSIEFGRQSSQRMSFLR 666
Query: 657 SISRGSS-IGNSSRHSISVSFGLPSG-QFADTALGEPAGPSQPTEEVAPEVPTRRLAYLN 714
SISRGSS GNSSRHS SVSFGLP+G D A+ + P + E PEVP RRLAYLN
Sbjct: 667 SISRGSSGPGNSSRHSFSVSFGLPTGLGLPDNAIADAEAPR--SSEQPPEVPIRRLAYLN 724
Query: 715 KPEIPVILAGTIAAMANGVILPIYGLLISSVIETFFKPPHELKKDSRFWALIYLALGAGS 774
KPEIPV+L GT+AA+ NG ILPI+G+LISSVI+TF++PPH+L+KDS FWALI+L LG S
Sbjct: 725 KPEIPVLLLGTVAAIVNGTILPIFGILISSVIKTFYEPPHQLRKDSNFWALIFLVLGVVS 784
Query: 775 FLLSPAQSYFFAVAGNKLIQRIRSMCFEKVIHMEVSWFDEPEHSSGAIGARLSADAASVR 834
FL PA++Y F+VAG KLIQR+RSMCFEKV+HMEV WFD+PEHSSGAIGARLSADAA++R
Sbjct: 785 FLAFPARTYLFSVAGCKLIQRVRSMCFEKVVHMEVGWFDQPEHSSGAIGARLSADAATIR 844
Query: 835 ALVGDALARIVQNISTAAAGLIIAFTASWQLALIILVMLPLIGVSGYTQMKFMKGFSADA 894
ALVGDALA++VQN ++A AGL IAF ASWQLA IIL ++PLIG++GY Q+KF+KGFSADA
Sbjct: 845 ALVGDALAQVVQNAASAIAGLAIAFAASWQLAFIILALIPLIGLNGYVQIKFLKGFSADA 904
Query: 895 KMKYEEASQVANDAVGSIRTVASFCAEEKVMQLYKKKCEAPMKTGIRQGMVSGGGFGASF 954
KM YEEASQVANDAVGSIRTVASFCAEEKVM LYKKKCE PM+TGIRQG+VSG GFG SF
Sbjct: 905 KMMYEEASQVANDAVGSIRTVASFCAEEKVMDLYKKKCEGPMRTGIRQGLVSGIGFGVSF 964
Query: 955 FLLFAFYAASFYAGARLVEDGKATFSDVFKVFFSLTMTAIGISQSSSFSSDSNKAKSAAA 1014
FLLF YA FYAGARLVE GK TF DVF+VFF+LTM +GISQSSSFS DS+KAKSAAA
Sbjct: 965 FLLFCVYALCFYAGARLVEAGKTTFGDVFRVFFALTMATVGISQSSSFSPDSSKAKSAAA 1024
Query: 1015 SIFAIIDRESKIDPSDESGTILEDVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTV 1074
SIF IIDR+S IDPSDESGT LE+VKGEIEL H+SFKYP+RPD+Q+FRDL+L IR+GKTV
Sbjct: 1025 SIFTIIDRKSTIDPSDESGTKLENVKGEIELRHISFKYPTRPDIQIFRDLSLTIRSGKTV 1084
Query: 1075 ALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDT 1134
ALVGESGSGKSTV++LLQRFYDPD+GHITLDGV+IQ LQL+WLRQQMGLVSQEPVLFNDT
Sbjct: 1085 ALVGESGSGKSTVIALLQRFYDPDSGHITLDGVDIQSLQLRWLRQQMGLVSQEPVLFNDT 1144
Query: 1135 IRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQ 1170
IRANIAYGK G TEAE+ AASE+ANAHKFI LQQ
Sbjct: 1145 IRANIAYGKEGHTTEAEVIAASELANAHKFISGLQQ 1180
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224130846|ref|XP_002320939.1| multidrug/pheromone exporter, MDR family, ABC transporter family [Populus trichocarpa] gi|222861712|gb|EEE99254.1| multidrug/pheromone exporter, MDR family, ABC transporter family [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 1817 bits (4707), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 883/1173 (75%), Positives = 1029/1173 (87%), Gaps = 8/1173 (0%)
Query: 2 NGESNSNEASASKSQEEVGKDSSMSGNEHDSEKGKQTEKTESVPFYKLFTFADSADTALM 61
NG+ + +EAS SKS E K S G++ + K K E+T++VPF KLF+FADS D LM
Sbjct: 8 NGDKSMDEASTSKSLEVEEKSSGGRGDQQEPVKSKGDEETKTVPFLKLFSFADSTDILLM 67
Query: 62 IIGSIGAIGNGLCLPLMTLLFGDLINTFGDNQNNSETVDKVSKVAVKFVYLGIGSGIASF 121
I+G+IGA+GNG P+M++LFGDL+N+FG NQNN + VD V+KV++ FVYLGIGS +A+F
Sbjct: 68 ILGTIGAVGNGASFPIMSILFGDLVNSFGQNQNNKDVVDLVTKVSLNFVYLGIGSAVAAF 127
Query: 122 LQVTCWMITGERQATRIRGLYLKTILRQDVAFFDNETNTGEVVGRMSGDTVLIQDAMGEK 181
LQV CWM+TGERQA RIRG YLKTIL+QDVAFFD ETNTGEVVGRMSGDTVLIQDAMGEK
Sbjct: 128 LQVACWMVTGERQAARIRGTYLKTILKQDVAFFDKETNTGEVVGRMSGDTVLIQDAMGEK 187
Query: 182 VGKFLQLMATFLGGFLIAFIKGWLLTLVMLSSIPLLAMSGGVMAIMISKMSSRGQGAYAK 241
VGKF+QL++TF+GGF++AF+KGWLL LVMLSSIPLL +SG +AI+I++M+SRGQ AYAK
Sbjct: 188 VGKFIQLVSTFIGGFIVAFVKGWLLALVMLSSIPLLVISGAGLAIIIARMASRGQTAYAK 247
Query: 242 AASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYKSGVQEGLAAGIGLGMVMLIVFCS 301
AA+VVEQ IGSIRTVASFTGEKQA+SNYKKFL TAY SGVQEG AG+GLG+VML+VFC+
Sbjct: 248 AATVVEQAIGSIRTVASFTGEKQAISNYKKFLATAYNSGVQEGFTAGLGLGIVMLLVFCT 307
Query: 302 YALSVWYGGKLILEEGYNGGQVVNVMVAVLTGSMSLGEASPCLSAFGAGQAAAFKMFETI 361
YAL++W+GGK+ILE+GY GG VVNV++AVLTGSMSLG+ASPC+SAF AGQAAA+KMFETI
Sbjct: 308 YALAIWFGGKMILEKGYTGGDVVNVIIAVLTGSMSLGQASPCMSAFAAGQAAAYKMFETI 367
Query: 362 NRKPEIDAYDTKGKILDDIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQS 421
NRKPEID+ DT GKILDDI GD+ELRDVYF+YPARP+EQIFSGFS+ I SGTT ALVGQS
Sbjct: 368 NRKPEIDSSDTSGKILDDISGDVELRDVYFTYPARPDEQIFSGFSLFIPSGTTTALVGQS 427
Query: 422 GSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIA 481
GSGKSTVISLIERFYDPQAGEVLIDG NLKEFQL+WIR+KIGLVSQEPVLFT SI+DNIA
Sbjct: 428 GSGKSTVISLIERFYDPQAGEVLIDGTNLKEFQLKWIREKIGLVSQEPVLFTSSIRDNIA 487
Query: 482 YGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDP 541
YGKD ATTEEIR ELANAAKFIDKLPQG+DT+VGEHGTQ+SGGQKQRIAIARAILKDP
Sbjct: 488 YGKDGATTEEIRAVAELANAAKFIDKLPQGLDTMVGEHGTQMSGGQKQRIAIARAILKDP 547
Query: 542 RILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEK 601
RILLLDEATSALDAESE++VQEALDRIMVNRTT+IVAHRLSTVRN D+I+VIH GKIVEK
Sbjct: 548 RILLLDEATSALDAESERIVQEALDRIMVNRTTLIVAHRLSTVRNVDLISVIHHGKIVEK 607
Query: 602 GTHSKLVEDPEGAYSQLIRLQEANKESEQTIDGQRKSEISMESLRHSSHRMSLRRSISRG 661
G+HS+L++DPEGAYSQLIRLQE NKESE + KS+I+MES R SS R+SL RS+SRG
Sbjct: 608 GSHSELLKDPEGAYSQLIRLQEVNKESEHETE-DHKSDITMESFRQSSPRISLERSLSRG 666
Query: 662 SSIGNSSRHSISVSFGLPSGQFA----DTALGEPAGPSQPTEEVAPEVPTRRLAYLNKPE 717
SS G + SVS GL + F+ D A GE S + P+ RRLAYLNKPE
Sbjct: 667 SS-GAGNISPFSVSLGLHTAGFSVPDTDNAPGEVEASSHKPK--TPDGLIRRLAYLNKPE 723
Query: 718 IPVILAGTIAAMANGVILPIYGLLISSVIETFFKPPHELKKDSRFWALIYLALGAGSFLL 777
IPV++AG IAA+ NGVI PI+G+L+S+VI+TFF+PPHEL+KDS+FWAL+++ LG SFL+
Sbjct: 724 IPVLIAGAIAAILNGVIFPIFGVLLSNVIKTFFEPPHELRKDSKFWALMFMTLGLASFLV 783
Query: 778 SPAQSYFFAVAGNKLIQRIRSMCFEKVIHMEVSWFDEPEHSSGAIGARLSADAASVRALV 837
P Q+Y F+VAG KLIQRIRS+CFEKV+HMEV WFDEPEHSSG IGARLSADAA+VRALV
Sbjct: 784 FPTQTYLFSVAGGKLIQRIRSICFEKVVHMEVGWFDEPEHSSGVIGARLSADAATVRALV 843
Query: 838 GDALARIVQNISTAAAGLIIAFTASWQLALIILVMLPLIGVSGYTQMKFMKGFSADAKMK 897
GD+LA++VQNI++A AGL+IAFTA WQLALIILV++PL+G++G Q+KFMKGFSADAKM
Sbjct: 844 GDSLAQMVQNIASATAGLVIAFTACWQLALIILVLIPLVGLNGIIQIKFMKGFSADAKMM 903
Query: 898 YEEASQVANDAVGSIRTVASFCAEEKVMQLYKKKCEAPMKTGIRQGMVSGGGFGASFFLL 957
YEEASQVANDAVGSIRTVASFCAEEKVMQLYKKKCE PM+TGI+QG++ G GFG SFFLL
Sbjct: 904 YEEASQVANDAVGSIRTVASFCAEEKVMQLYKKKCEGPMETGIKQGLICGTGFGVSFFLL 963
Query: 958 FAFYAASFYAGARLVEDGKATFSDVFKVFFSLTMTAIGISQSSSFSSDSNKAKSAAASIF 1017
F+ YA SFYAGA+LV+ GK TF++VF+VFF+LTM AIGISQ+SSF DS+ AK+AAASIF
Sbjct: 964 FSVYATSFYAGAQLVQHGKTTFTEVFRVFFALTMAAIGISQTSSFGPDSSSAKTAAASIF 1023
Query: 1018 AIIDRESKIDPSDESGTILEDVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALV 1077
+IIDR+SK+D SDESGT L+ V+GEIELHH+SFKYP+RPD+Q+FRDL+L I +GKTVALV
Sbjct: 1024 SIIDRKSKMDASDESGTKLDSVRGEIELHHISFKYPTRPDIQIFRDLSLVIHSGKTVALV 1083
Query: 1078 GESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRA 1137
GESGSGKSTV+SLLQRFYDP +GHITLDGV+IQ LQLKWLRQQMGLVSQEPVLFNDTIRA
Sbjct: 1084 GESGSGKSTVISLLQRFYDPHSGHITLDGVDIQSLQLKWLRQQMGLVSQEPVLFNDTIRA 1143
Query: 1138 NIAYGKGGDATEAEIQAASEMANAHKFICSLQQ 1170
NIAYGK G ATE EI AASE+ANAH FI SLQQ
Sbjct: 1144 NIAYGKQGKATETEILAASELANAHNFISSLQQ 1176
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224064756|ref|XP_002301547.1| multidrug/pheromone exporter, MDR family, ABC transporter family [Populus trichocarpa] gi|222843273|gb|EEE80820.1| multidrug/pheromone exporter, MDR family, ABC transporter family [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 1805 bits (4676), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 876/1111 (78%), Positives = 1013/1111 (91%), Gaps = 6/1111 (0%)
Query: 61 MIIGSIGAIGNGLCLPLMTLLFGDLINTFGDNQNNSETVDKVSKVAVKFVYLGIGSGIAS 120
MI+G++GAIGNG +P+M++LFGDLIN+FG NQNN + VD VSKV++KFVYLG+GS + S
Sbjct: 1 MILGTVGAIGNGASMPIMSILFGDLINSFGKNQNNKDVVDLVSKVSLKFVYLGVGSAVGS 60
Query: 121 FLQVTCWMITGERQATRIRGLYLKTILRQDVAFFDNETNTGEVVGRMSGDTVLIQDAMGE 180
FLQV CWM+TGERQA RIRG YLKTILRQDVAFFD ETN+GEVVGRMSGDTVLIQDAMGE
Sbjct: 61 FLQVACWMVTGERQAARIRGTYLKTILRQDVAFFDKETNSGEVVGRMSGDTVLIQDAMGE 120
Query: 181 KVGKFLQLMATFLGGFLIAFIKGWLLTLVMLSSIPLLAMSGGVMAIMISKMSSRGQGAYA 240
KVGKF+QL++TF+GGF+I+FIKGWLLTLVMLSSIPLL ++G ++IMI++M+SRGQ AY+
Sbjct: 121 KVGKFIQLVSTFIGGFIISFIKGWLLTLVMLSSIPLLVIAGAGLSIMIARMASRGQTAYS 180
Query: 241 KAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYKSGVQEGLAAGIGLGMVMLIVFC 300
KAASVVEQTIGSIRTVASFTGEKQA+SNYKKFLVTAY SGVQEGLAAG+GLG+VML+VFC
Sbjct: 181 KAASVVEQTIGSIRTVASFTGEKQAISNYKKFLVTAYNSGVQEGLAAGVGLGIVMLVVFC 240
Query: 301 SYALSVWYGGKLILEEGYNGGQVVNVMVAVLTGSMSLGEASPCLSAFGAGQAAAFKMFET 360
SYAL+VW+GG++ILE+GY GG V+NV+VAVLTGSMSLG+ASPC+SAF +GQAAA+KMFE
Sbjct: 241 SYALAVWFGGRMILEKGYTGGDVINVIVAVLTGSMSLGQASPCMSAFASGQAAAYKMFEA 300
Query: 361 INRKPEIDAYDTKGKILDDIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQ 420
INRKPEIDA DT+GKILDDIRGDIELRDVYF+YPARP+EQIFSGFS+ I SG+TAALVGQ
Sbjct: 301 INRKPEIDASDTRGKILDDIRGDIELRDVYFNYPARPDEQIFSGFSLFIPSGSTAALVGQ 360
Query: 421 SGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNI 480
SGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQL+WIR+KIGLVSQEPVLFT SIKDNI
Sbjct: 361 SGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLKWIREKIGLVSQEPVLFTSSIKDNI 420
Query: 481 AYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKD 540
AYGKD ATTEEIR A ELANAAKFIDKLPQGIDT+VGEHGTQLSGGQKQRIAIARAILKD
Sbjct: 421 AYGKDMATTEEIRAAAELANAAKFIDKLPQGIDTMVGEHGTQLSGGQKQRIAIARAILKD 480
Query: 541 PRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVE 600
PRILLLDEATSALDAESE++VQEALDRIMVNRTTVIVAHRLSTVRNADMIAVI+RGK+VE
Sbjct: 481 PRILLLDEATSALDAESERIVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIYRGKMVE 540
Query: 601 KGTHSKLVEDPEGAYSQLIRLQEANKESEQTIDGQRKSEISMESLRHSSHRMSLRRSISR 660
KG+HS+L++DPEGAYSQLIRLQE NKESEQ D Q+KS+IS ESLRHSS ++SL+RSISR
Sbjct: 541 KGSHSELLKDPEGAYSQLIRLQEVNKESEQEADDQKKSDISTESLRHSSQKISLKRSISR 600
Query: 661 GSS-IGNSSRHSISVSFGLPSGQFADTALGEPAGPSQPTEEVAPEVPTRRLAYLNKPEIP 719
GSS GNSSR S SV+FGLP+G A E S P ++ P+VP RL YLNKPE+P
Sbjct: 601 GSSDFGNSSRRSFSVTFGLPTGFNAPDNYTEELEAS-PQKQQTPDVPISRLVYLNKPEVP 659
Query: 720 VILAGTIAAMANGVILPIYGLLISSVIETFFKPPHELKKDSRFWALIYLALGAGSFLLSP 779
V++AG IAA+ NGVI PI+G+LIS VI+TFF+PPHEL+KDS+FWAL+++ LG SF++ P
Sbjct: 660 VLIAGAIAAIINGVIFPIFGILISRVIKTFFEPPHELRKDSKFWALMFMTLGLASFVVYP 719
Query: 780 AQSYFFAVAGNKLIQRIRSMCFEKVIHMEVSWFDEPEHSSGAIGARLSADAASVRALVGD 839
+Q+Y F+VAG KLIQRIRSMCFEK++HMEV WFDEPEHSSGAIGARLSADAA+VR LVGD
Sbjct: 720 SQTYLFSVAGCKLIQRIRSMCFEKMVHMEVGWFDEPEHSSGAIGARLSADAATVRGLVGD 779
Query: 840 ALARIVQNISTAAAGLIIAFTASWQLALIILVMLPLIGVSGYTQMKFMKGFSADAKMKYE 899
+L+++VQNI++A AGL+IAF A WQLA +ILV+LPLIG++G+ QMKF+KGFS+DAK
Sbjct: 780 SLSQLVQNIASAVAGLVIAFVACWQLAFVILVLLPLIGLNGFIQMKFLKGFSSDAK---- 835
Query: 900 EASQVANDAVGSIRTVASFCAEEKVMQLYKKKCEAPMKTGIRQGMVSGGGFGASFFLLFA 959
EASQVANDAVGSIRTVASFCAEEKVMQLY+KKCE PM+TGIRQG++SG GFG SFFLLF+
Sbjct: 836 EASQVANDAVGSIRTVASFCAEEKVMQLYRKKCEGPMRTGIRQGLISGAGFGVSFFLLFS 895
Query: 960 FYAASFYAGARLVEDGKATFSDVFKVFFSLTMTAIGISQSSSFSSDSNKAKSAAASIFAI 1019
YA SFY GA+LV+ GK TF+DVF+VFF+LTM AIGISQSSSF+ DS+KAK+AAASIF+I
Sbjct: 896 VYATSFYVGAQLVQHGKTTFADVFQVFFALTMAAIGISQSSSFAPDSSKAKAAAASIFSI 955
Query: 1020 IDRESKIDPSDESGTILEDVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGE 1079
IDR+S+ID SDESGT L++VKGEIEL H+ FKYP+RPD+++FRDL+L I +GKTVALVGE
Sbjct: 956 IDRKSQIDSSDESGTTLDNVKGEIELRHIGFKYPARPDIEIFRDLSLAIHSGKTVALVGE 1015
Query: 1080 SGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANI 1139
SGSGKSTV+SLLQRFYDP +GHITLDG++I+ LQLKWLRQQMGLVSQEPVLFN+TIRANI
Sbjct: 1016 SGSGKSTVISLLQRFYDPHSGHITLDGIDIKSLQLKWLRQQMGLVSQEPVLFNETIRANI 1075
Query: 1140 AYGKGGDATEAEIQAASEMANAHKFICSLQQ 1170
AYGK GDATEAEI AASE+ANAHKFI SLQQ
Sbjct: 1076 AYGKEGDATEAEILAASELANAHKFISSLQQ 1106
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356499544|ref|XP_003518599.1| PREDICTED: ABC transporter B family member 4-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1801 bits (4666), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 899/1170 (76%), Positives = 1030/1170 (88%), Gaps = 11/1170 (0%)
Query: 2 NGESNSN-EASASKSQEEVGKDSSMSGNEHDSEKGKQTEKTESVPFYKLFTFADSADTAL 60
NGE + EAS S++ E S N EKGKQ EK E+VPF+KLF FADS D L
Sbjct: 5 NGEERKHHEASTSENSAET------STNGEKREKGKQKEKPETVPFHKLFAFADSTDILL 58
Query: 61 MIIGSIGAIGNGLCLPLMTLLFGDLINTFGDNQNNSETVDKVSKVAVKFVYLGIGSGIAS 120
M +G+IGAIGNGL LPLMTLLFG +I++FG NQ N+ V++VSKV++KFVYL +GSG+A+
Sbjct: 59 MAVGTIGAIGNGLGLPLMTLLFGQMIDSFGSNQQNTHVVEEVSKVSLKFVYLAVGSGMAA 118
Query: 121 FLQVTCWMITGERQATRIRGLYLKTILRQDVAFFDNETNTGEVVGRMSGDTVLIQDAMGE 180
FLQVT WM+TGERQA RIRGLYLKTILRQDVAFFD ETNTGEV+GRMSGDTVLIQDAMGE
Sbjct: 119 FLQVTSWMVTGERQAARIRGLYLKTILRQDVAFFDKETNTGEVIGRMSGDTVLIQDAMGE 178
Query: 181 KVGKFLQLMATFLGGFLIAFIKGWLLTLVMLSSIPLLAMSGGVMAIMISKMSSRGQGAYA 240
KVGKFLQL+ATF+GGF+IAF++GWLLT+VMLS++PLLA+SG MA++I +M+SRGQ AYA
Sbjct: 179 KVGKFLQLIATFIGGFVIAFVRGWLLTVVMLSTLPLLALSGATMAVIIGRMASRGQTAYA 238
Query: 241 KAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYKSGVQEGLAAGIGLGMVMLIVFC 300
KAA VVEQTIGSIRTVASFTGEKQA+S+Y KFLV AYKSGV EG AG GLG VML++FC
Sbjct: 239 KAAHVVEQTIGSIRTVASFTGEKQAVSSYSKFLVDAYKSGVHEGSTAGAGLGTVMLVIFC 298
Query: 301 SYALSVWYGGKLILEEGYNGGQVVNVMVAVLTGSMSLGEASPCLSAFGAGQAAAFKMFET 360
YAL+VW+G K+I+E+GYNGG V+NV++AVLT SMSLG+ASP +SAF AGQAAA+KMF+T
Sbjct: 299 GYALAVWFGAKMIMEKGYNGGTVINVIIAVLTASMSLGQASPSMSAFAAGQAAAYKMFQT 358
Query: 361 INRKPEIDAYDTKGKILDDIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQ 420
I RKPEIDAYD GKIL+DI+G+IELRDV FSYPARP E IF+GFS+ I SGTTAALVGQ
Sbjct: 359 IERKPEIDAYDPNGKILEDIQGEIELRDVDFSYPARPEELIFNGFSLHIPSGTTAALVGQ 418
Query: 421 SGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNI 480
SGSGKSTVISL+ERFYDPQAGEVLIDGINLKEFQL+WIR KIGLVSQEPVLF SIKDNI
Sbjct: 419 SGSGKSTVISLVERFYDPQAGEVLIDGINLKEFQLRWIRGKIGLVSQEPVLFASSIKDNI 478
Query: 481 AYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKD 540
AYGK+ AT EEIR A+ELANAAKFIDKLPQG+DT+VGEHGTQLSGGQKQRIAIARAILK+
Sbjct: 479 AYGKEGATIEEIRSASELANAAKFIDKLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKN 538
Query: 541 PRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVE 600
PRILLLDEATSALDAESE++VQEALDRIMVNRTT+IVAHRLSTVRNAD+IAVIHRGK+VE
Sbjct: 539 PRILLLDEATSALDAESERIVQEALDRIMVNRTTIIVAHRLSTVRNADVIAVIHRGKMVE 598
Query: 601 KGTHSKLVEDPEGAYSQLIRLQEANKESEQTIDGQRKSEISMESLRHSSHRMSLRRSISR 660
KGTH +L++DPEGAYSQLIRLQE NKE+E D SE+S+ES R SS + SL+RSISR
Sbjct: 599 KGTHIELLKDPEGAYSQLIRLQEVNKETEGNADQHNNSELSVESFRQSSQKRSLQRSISR 658
Query: 661 GSSIGNSSRHSISVSFGLPSGQFADTALGEPAGPSQPTEEVAPEVPTRRLAYLNKPEIPV 720
GSS+GNSSRHS SVSFGLP+G + +P S +E APEVP RLA LNKPEIPV
Sbjct: 659 GSSLGNSSRHSFSVSFGLPTG----VNVADPEHESSQPKEEAPEVPLSRLASLNKPEIPV 714
Query: 721 ILAGTIAAMANGVILPIYGLLISSVIETFFKPPHELKKDSRFWALIYLALGAGSFLLSPA 780
++ G++AA+ANGVI PI+G+LISSVI+TF++P E+KKDS+FWAL+++ LG SFL+ PA
Sbjct: 715 LVIGSVAAIANGVIFPIFGVLISSVIKTFYEPFDEMKKDSKFWALMFMILGLASFLIIPA 774
Query: 781 QSYFFAVAGNKLIQRIRSMCFEKVIHMEVSWFDEPEHSSGAIGARLSADAASVRALVGDA 840
+ YFFAVAG KLIQRIR MCFEKV++MEVSWFDEPE+SSGAIGARLSADAASVRALVGDA
Sbjct: 775 RGYFFAVAGCKLIQRIRQMCFEKVVNMEVSWFDEPENSSGAIGARLSADAASVRALVGDA 834
Query: 841 LARIVQNISTAAAGLIIAFTASWQLALIILVMLPLIGVSGYTQMKFMKGFSADAKMKYEE 900
L +VQN +T AGLIIAF ASWQLALIILV++PLIGV+GY QMKFMKGFSADAKM YEE
Sbjct: 835 LGLLVQNFATVLAGLIIAFVASWQLALIILVLIPLIGVNGYVQMKFMKGFSADAKMMYEE 894
Query: 901 ASQVANDAVGSIRTVASFCAEEKVMQLYKKKCEAPMKTGIRQGMVSGGGFGASFFLLFAF 960
ASQVANDAVGSIRTVASFCAE+KVM+LYK KCE PMKTGIRQG++SG GFG SFFLLF
Sbjct: 895 ASQVANDAVGSIRTVASFCAEDKVMELYKNKCEGPMKTGIRQGLISGSGFGVSFFLLFCV 954
Query: 961 YAASFYAGARLVEDGKATFSDVFKVFFSLTMTAIGISQSSSFSSDSNKAKSAAASIFAII 1020
YA SFYAGARLV+ GKATFSDVF+VFF+LTM AIG+SQSSSF+ DS+KAKSA ASIF II
Sbjct: 955 YATSFYAGARLVDAGKATFSDVFRVFFALTMAAIGVSQSSSFAPDSSKAKSATASIFGII 1014
Query: 1021 DRESKIDPSDESGTILEDVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGES 1080
D++SKIDP DESG+ L+ VKGEIEL HVSFKYPSRPD+Q+FRDL+L I +GKTVALVGES
Sbjct: 1015 DKKSKIDPGDESGSTLDSVKGEIELRHVSFKYPSRPDIQIFRDLSLTIHSGKTVALVGES 1074
Query: 1081 GSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIA 1140
GSGKSTV++LLQRFY+PD+G ITLDG+EI++LQLKWLRQQMGLVSQEPVLFN+TIRANIA
Sbjct: 1075 GSGKSTVIALLQRFYNPDSGQITLDGIEIRELQLKWLRQQMGLVSQEPVLFNETIRANIA 1134
Query: 1141 YGKGGDATEAEIQAASEMANAHKFICSLQQ 1170
YGKGGDATEAEI AA+EMANAHKFI LQQ
Sbjct: 1135 YGKGGDATEAEIIAAAEMANAHKFISGLQQ 1164
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356533485|ref|XP_003535294.1| PREDICTED: ABC transporter B family member 4-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1800 bits (4663), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 904/1171 (77%), Positives = 1032/1171 (88%), Gaps = 13/1171 (1%)
Query: 2 NGESNS-NEASASKSQEEVGKDSSMSGNEHDSEKGKQTEKTESVPFYKLFTFADSADTAL 60
NGE ++AS S+++ E S N EK KQ EK E+VPF+KLF FADS D L
Sbjct: 5 NGEERKHDDASTSENRAET------STNGEKEEKSKQQEKPETVPFHKLFAFADSTDILL 58
Query: 61 MIIGSIGAIGNGLCLPLMTLLFGDLINTFGDNQNNSETVDKVSKVAVKFVYLGIGSGIAS 120
M +G+IGAIGNGL LPLMTLLFG +I++FG NQ N+ V++VSKV++KFVYL +GSG+A+
Sbjct: 59 MAVGTIGAIGNGLGLPLMTLLFGQMIDSFGSNQRNTNVVEEVSKVSLKFVYLAVGSGLAA 118
Query: 121 FLQVTCWMITGERQATRIRGLYLKTILRQDVAFFDNETNTGEVVGRMSGDTVLIQDAMGE 180
FLQVT WM+TGERQA RIRGLYLKTILRQDVAFFD ETNTGEV+GRMSGDTVLIQDAMGE
Sbjct: 119 FLQVTSWMVTGERQAARIRGLYLKTILRQDVAFFDKETNTGEVIGRMSGDTVLIQDAMGE 178
Query: 181 KVGKFLQLMATFLGGFLIAFIKGWLLTLVMLSSIPLLAMSGGVMAIMISKMSSRGQGAYA 240
KVGKFLQL+ATF+GGF+IAFIKGWLLT+VMLS++PLLA+SG MA++I +M+SRGQ AYA
Sbjct: 179 KVGKFLQLIATFIGGFVIAFIKGWLLTVVMLSTLPLLALSGATMAVIIGRMASRGQTAYA 238
Query: 241 KAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYKSGVQEGLAAGIGLGMVMLIVFC 300
KAA VVEQTIGSIRTVASFTGEKQA+S+Y KFLV AYKSGV EG AG GLG VML++FC
Sbjct: 239 KAAHVVEQTIGSIRTVASFTGEKQAVSSYSKFLVDAYKSGVHEGFIAGAGLGTVMLVIFC 298
Query: 301 SYALSVWYGGKLILEEGYNGGQVVNVMVAVLTGSMSLGEASPCLSAFGAGQAAAFKMFET 360
YAL+VW+G K+I+E+GYNGG V+NV++AVLT SMSLGEASP LSAF AGQAAA+KMF+T
Sbjct: 299 GYALAVWFGAKMIMEKGYNGGTVINVIIAVLTASMSLGEASPSLSAFAAGQAAAYKMFQT 358
Query: 361 INRKPEIDAYDTKGKILDDIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQ 420
I RKPEIDAYD GKIL+DI+G+IELRDVYFSYPARP E IF+GFS+ I SGTTAALVGQ
Sbjct: 359 IERKPEIDAYDPNGKILEDIQGEIELRDVYFSYPARPEELIFNGFSLHIPSGTTAALVGQ 418
Query: 421 SGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNI 480
SGSGKSTVISL+ERFYDPQAGEVLIDGINLKEFQL+WIR KIGLVSQEPVLF SIKDNI
Sbjct: 419 SGSGKSTVISLVERFYDPQAGEVLIDGINLKEFQLRWIRGKIGLVSQEPVLFASSIKDNI 478
Query: 481 AYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKD 540
AYGK+ AT EEIR A+ELANAAKFIDKLPQG+DT+V EHGTQLSGGQKQRIAIARAILK+
Sbjct: 479 AYGKEGATIEEIRSASELANAAKFIDKLPQGLDTMVCEHGTQLSGGQKQRIAIARAILKN 538
Query: 541 PRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVE 600
PRILLLDEATSALDAESE+VVQEALDRIMVNRTT++VAHRLSTVRNADMIAVIHRGK+VE
Sbjct: 539 PRILLLDEATSALDAESERVVQEALDRIMVNRTTIVVAHRLSTVRNADMIAVIHRGKMVE 598
Query: 601 KGTHSKLVEDPEGAYSQLIRLQEANKESEQTIDGQRKSEISMESLRHSSHRMSLRRSISR 660
KGTHS+L++DPEGAYSQLIRLQE +KE+E D K+E+S+ES R SS + SL+RSISR
Sbjct: 599 KGTHSELLKDPEGAYSQLIRLQEVSKETEGNADQHDKTELSVESFRQSSQKRSLQRSISR 658
Query: 661 GSSIGNSSRHSISVSFGLPSG-QFADTALGEPAGPSQPTEEVAPEVPTRRLAYLNKPEIP 719
GSS+GNSSRHS SVSFGLP+G AD L SQP EE APEVP RLA LNKPEIP
Sbjct: 659 GSSLGNSSRHSFSVSFGLPTGVNVADPELEN----SQPKEE-APEVPLSRLASLNKPEIP 713
Query: 720 VILAGTIAAMANGVILPIYGLLISSVIETFFKPPHELKKDSRFWALIYLALGAGSFLLSP 779
VI+ G++AA+ANGVI PI+G+LISSVI+TF++P E+KKDS FWAL+++ LG SFL+ P
Sbjct: 714 VIVIGSVAAIANGVIFPIFGVLISSVIKTFYEPFDEMKKDSEFWALMFMILGLASFLIIP 773
Query: 780 AQSYFFAVAGNKLIQRIRSMCFEKVIHMEVSWFDEPEHSSGAIGARLSADAASVRALVGD 839
A+ YFF+VAG KLIQRIR MCFEKV++MEVSWFDEPE+SSGAIGARLSADAASVRALVGD
Sbjct: 774 ARGYFFSVAGCKLIQRIRLMCFEKVVNMEVSWFDEPENSSGAIGARLSADAASVRALVGD 833
Query: 840 ALARIVQNISTAAAGLIIAFTASWQLALIILVMLPLIGVSGYTQMKFMKGFSADAKMKYE 899
AL +VQN +TA AGLIIAF ASWQLALIILV++PLIGV+GY QMKFMKGFSADAKM YE
Sbjct: 834 ALGLLVQNFATALAGLIIAFVASWQLALIILVLIPLIGVNGYVQMKFMKGFSADAKMMYE 893
Query: 900 EASQVANDAVGSIRTVASFCAEEKVMQLYKKKCEAPMKTGIRQGMVSGGGFGASFFLLFA 959
EASQVANDAVGSIRTVASFCAE+KVM+LYKKKCE PMKTGIRQG++SG GFG SFFLLF
Sbjct: 894 EASQVANDAVGSIRTVASFCAEDKVMELYKKKCEGPMKTGIRQGLISGSGFGVSFFLLFC 953
Query: 960 FYAASFYAGARLVEDGKATFSDVFKVFFSLTMTAIGISQSSSFSSDSNKAKSAAASIFAI 1019
YA SFYAGARL++ GK TFSDVF+VFF+LTM AIG+SQSSSF+ DS+KAKSA ASIF I
Sbjct: 954 VYATSFYAGARLMDSGKTTFSDVFQVFFALTMAAIGVSQSSSFAPDSSKAKSATASIFGI 1013
Query: 1020 IDRESKIDPSDESGTILEDVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGE 1079
ID++SKID SD SG+ L+ +KGEIEL HVSFKYPSRPD+Q+FRDL L I +GKTVALVGE
Sbjct: 1014 IDKKSKIDSSDASGSTLDSIKGEIELRHVSFKYPSRPDMQIFRDLRLTIHSGKTVALVGE 1073
Query: 1080 SGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANI 1139
SGSGKSTV++LLQRFYDPD+G ITLDGVEI++LQLKWLRQQMGLVSQEPVLFN+++RANI
Sbjct: 1074 SGSGKSTVIALLQRFYDPDSGQITLDGVEIRELQLKWLRQQMGLVSQEPVLFNESLRANI 1133
Query: 1140 AYGKGGDATEAEIQAASEMANAHKFICSLQQ 1170
AYGKGGDATEAEI AA+E+ANAHKFI LQQ
Sbjct: 1134 AYGKGGDATEAEIIAAAELANAHKFISGLQQ 1164
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255548261|ref|XP_002515187.1| multidrug resistance protein 1, 2, putative [Ricinus communis] gi|223545667|gb|EEF47171.1| multidrug resistance protein 1, 2, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 1788 bits (4632), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 886/1173 (75%), Positives = 1023/1173 (87%), Gaps = 31/1173 (2%)
Query: 1 MNGESNSNEA-SASKSQEEVGKDSSMSGNEHDSEKGKQTEKTESVPFYKLFTFADSADTA 59
+NG ++++EA ++ +EE K SS +G D+EK K EKT SVPF+KLF+FADS D
Sbjct: 7 LNGNTSTHEAGTSKSHEEEKEKKSSTNGLPQDTEKSKGDEKTNSVPFHKLFSFADSKDVI 66
Query: 60 LMIIGSIGAIGNGLCLPLMTLLFGDLINTFGDNQNNSETVDKVSKVAVKFVYLGIGSGIA 119
LMIIG+I AIGNGL LPLMT++ GD+I+ FG NQN + V VSKV+++FVYL IG+ A
Sbjct: 67 LMIIGTIAAIGNGLALPLMTIVLGDIIDAFGQNQNQ-DVVKVVSKVSLRFVYLAIGAAAA 125
Query: 120 SFLQVTCWMITGERQATRIRGLYLKTILRQDVAFFDNETNTGEVVGRMSGDTVLIQDAMG 179
SFL C LR V NTGEV+GRMSGDTVLIQDAMG
Sbjct: 126 SFL--PCG-------------------LRNSVCC----XNTGEVIGRMSGDTVLIQDAMG 160
Query: 180 EKVGKFLQLMATFLGGFLIAFIKGWLLTLVMLSSIPLLAMSGGVMAIMISKMSSRGQGAY 239
EKVGKF+QL++TFLGGF+IAF+KGWLLT VMLSSIPLL ++GGVM+I ISKM+SRGQ AY
Sbjct: 161 EKVGKFIQLVSTFLGGFVIAFVKGWLLTFVMLSSIPLLVIAGGVMSITISKMASRGQTAY 220
Query: 240 AKAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYKSGVQEGLAAGIGLGMVMLIVF 299
AKAA+VVEQTIGSIRTVASFTGEKQA+SNYKKFLVTAY SGV EG+A G+GLG++ML+VF
Sbjct: 221 AKAATVVEQTIGSIRTVASFTGEKQAISNYKKFLVTAYNSGVHEGIATGVGLGVLMLVVF 280
Query: 300 CSYALSVWYGGKLILEEGYNGGQVVNVMVAVLTGSMSLGEASPCLSAFGAGQAAAFKMFE 359
CSY+L++W+GGK+ILE+GY GGQV+NV++AVL+GSMSLG+ASPC+SAF AGQAAA+KMFE
Sbjct: 281 CSYSLAIWFGGKMILEKGYTGGQVLNVIIAVLSGSMSLGQASPCMSAFAAGQAAAYKMFE 340
Query: 360 TINRKPEIDAYDTKGKILDDIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVG 419
TI+R PEIDAYDT+GKIL+DIRGDIELRDVYFSYPARP EQIFSGFS+SI SGTT ALVG
Sbjct: 341 TISRMPEIDAYDTRGKILEDIRGDIELRDVYFSYPARPEEQIFSGFSLSIPSGTTTALVG 400
Query: 420 QSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDN 479
QSGSGKSTVISLIERFYDPQAGEV IDGINLKEFQL+WIR+KIGLVSQEPVLFT SI+DN
Sbjct: 401 QSGSGKSTVISLIERFYDPQAGEVRIDGINLKEFQLKWIREKIGLVSQEPVLFTASIRDN 460
Query: 480 IAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILK 539
IAYGKD ATTEEIR A ELANAAKFIDKLPQG+DT+ GEHGTQLSGGQKQRIAIARAILK
Sbjct: 461 IAYGKDGATTEEIRSAAELANAAKFIDKLPQGLDTMAGEHGTQLSGGQKQRIAIARAILK 520
Query: 540 DPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIV 599
DPRILLLDEATSALDAESE+VVQEALDRIMVNRTTVIVAHRLST+RNAD+IAVIHRGK+V
Sbjct: 521 DPRILLLDEATSALDAESERVVQEALDRIMVNRTTVIVAHRLSTIRNADVIAVIHRGKMV 580
Query: 600 EKGTHSKLVEDPEGAYSQLIRLQEANKESEQTIDGQRKSEISMESLRHSSHRMSLRRSIS 659
EKG+HS+L+ DP+GAYSQLIRLQE NK+SEQ + ++S++S ES R SS R+SLRRSIS
Sbjct: 581 EKGSHSELLMDPDGAYSQLIRLQEVNKDSEQKPEDHKRSDLSSESFRQSSQRISLRRSIS 640
Query: 660 RGSS-IGNSSRHSISVSFGLPSGQFA-DTALGEPAGPSQPTEEVAPEVPTRRLAYLNKPE 717
RGSS +GNSSRHS SVSFGLP+G A D EP P+ E PEVP RRLAYLNKPE
Sbjct: 641 RGSSGVGNSSRHSFSVSFGLPTGINATDNPQEEPT--DSPSPENTPEVPIRRLAYLNKPE 698
Query: 718 IPVILAGTIAAMANGVILPIYGLLISSVIETFFKPPHELKKDSRFWALIYLALGAGSFLL 777
IPV++ G IAA ANGVI PIYG+L+S VI++F++PPHEL+KD+ FWALI++ LG SF++
Sbjct: 699 IPVLIFGAIAACANGVIFPIYGILLSRVIKSFYEPPHELRKDTNFWALIFMTLGLASFVV 758
Query: 778 SPAQSYFFAVAGNKLIQRIRSMCFEKVIHMEVSWFDEPEHSSGAIGARLSADAASVRALV 837
P Q YFF VAG++LIQRIR++CFEKV+HMEV WFDEPEHSSGAIGARLSADAA+VRALV
Sbjct: 759 IPLQFYFFGVAGSRLIQRIRTICFEKVVHMEVGWFDEPEHSSGAIGARLSADAATVRALV 818
Query: 838 GDALARIVQNISTAAAGLIIAFTASWQLALIILVMLPLIGVSGYTQMKFMKGFSADAKMK 897
GD+LA++VQN+++A AGL+IAFTASWQLA IIL ++PLIGV+GY Q+KFM+GFSADAKM
Sbjct: 819 GDSLAQMVQNLASAVAGLVIAFTASWQLAFIILALIPLIGVTGYVQVKFMQGFSADAKMM 878
Query: 898 YEEASQVANDAVGSIRTVASFCAEEKVMQLYKKKCEAPMKTGIRQGMVSGGGFGASFFLL 957
YEEASQVANDAVGSIRTVASFCAEEKVMQ+YKKKCE PMKTGIRQG++SG GFGASFFLL
Sbjct: 879 YEEASQVANDAVGSIRTVASFCAEEKVMQMYKKKCEGPMKTGIRQGVISGMGFGASFFLL 938
Query: 958 FAFYAASFYAGARLVEDGKATFSDVFKVFFSLTMTAIGISQSSSFSSDSNKAKSAAASIF 1017
F+ YA SFYAGA+LV+ GK +FSDVF+VFF+LTM A+GISQSSS + DS+KA+SA ASIF
Sbjct: 939 FSVYATSFYAGAQLVKHGKTSFSDVFQVFFALTMAAMGISQSSSLAPDSSKARSAVASIF 998
Query: 1018 AIIDRESKIDPSDESGTILEDVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALV 1077
+IIDR+SKIDPSDESG +E+V+GEIEL VSF+YPSRPD+Q+FRDLNL I +GKTVALV
Sbjct: 999 SIIDRQSKIDPSDESGMTIENVRGEIELRRVSFRYPSRPDIQIFRDLNLAIHSGKTVALV 1058
Query: 1078 GESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRA 1137
GESGSGKSTV+SLLQRFYDPD+GHITLDGVEIQ+LQLKWLRQQMGLVSQEPVLFNDTIRA
Sbjct: 1059 GESGSGKSTVISLLQRFYDPDSGHITLDGVEIQRLQLKWLRQQMGLVSQEPVLFNDTIRA 1118
Query: 1138 NIAYGKGGDATEAEIQAASEMANAHKFICSLQQ 1170
NIAYGK GDATEAE AASE+ANAHKFI SLQQ
Sbjct: 1119 NIAYGKDGDATEAETLAASELANAHKFISSLQQ 1151
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255548259|ref|XP_002515186.1| multidrug resistance protein 1, 2, putative [Ricinus communis] gi|223545666|gb|EEF47170.1| multidrug resistance protein 1, 2, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 1786 bits (4626), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 878/1172 (74%), Positives = 1037/1172 (88%), Gaps = 6/1172 (0%)
Query: 1 MNGESNSNEASASKSQEEVGKDSSMSGNEHDSEKGKQTEKTESVPFYKLFTFADSADTAL 60
++ + +++E S SK EE K + +G+ + EK EKT SVPF+KLF+FADS D L
Sbjct: 7 VHSDISTHETSTSKGLEEKDKSARANGHPQEMEKSNGEEKTNSVPFHKLFSFADSVDIVL 66
Query: 61 MIIGSIGAIGNGLCLPLMTLLFGDLINTFGDNQNNSETVDKVSKVAVKFVYLGIGSGIAS 120
MIIG+IGA+GNGL +PLMT+ GD I+ FG+NQNN + VD VSKV++KFVYLGIGS +AS
Sbjct: 67 MIIGTIGALGNGLSMPLMTIFLGDTIDAFGNNQNNQDVVDIVSKVSLKFVYLGIGSSVAS 126
Query: 121 FLQVTCWMITGERQATRIRGLYLKTILRQDVAFFDNETNTGEVVGRMSGDTVLIQDAMGE 180
FLQV CWM+TGERQA RIRGLYLKTILRQD+AFFD ETNTGEV+GRMSGDTVLIQDAMGE
Sbjct: 127 FLQVVCWMVTGERQAARIRGLYLKTILRQDIAFFDKETNTGEVIGRMSGDTVLIQDAMGE 186
Query: 181 KVGKFLQLMATFLGGFLIAFIKGWLLTLVMLSSIPLLAMSGGVMAIMISKMSSRGQGAYA 240
KVGKFLQL++TF+GGFLIAF+KGWLLTLVMLSS+PLL ++G M+IMI++ +S GQ AYA
Sbjct: 187 KVGKFLQLLSTFIGGFLIAFVKGWLLTLVMLSSLPLLVLAGAAMSIMIARTASHGQNAYA 246
Query: 241 KAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYKSGVQEGLAAGIGLGMVMLIVFC 300
KAA+VVEQTIGSIRTVASFTGEKQA+ NY+K+LV AY SG EGL G+GLG+ + I+F
Sbjct: 247 KAATVVEQTIGSIRTVASFTGEKQAIRNYEKYLVAAYHSGAHEGLITGLGLGLFVFILFS 306
Query: 301 SYALSVWYGGKLILEEGYNGGQVVNVMVAVLTGSMSLGEASPCLSAFGAGQAAAFKMFET 360
SYAL++WYGGK+ILE+GY GG+V+NV++ VLTGS SLG+ASPC+SAF AGQAAA+KMFET
Sbjct: 307 SYALAIWYGGKMILEKGYTGGEVINVILVVLTGSTSLGQASPCMSAFAAGQAAAYKMFET 366
Query: 361 INRKPEIDAYDTKGKILDDIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQ 420
I RKPEIDAYDT GK+ DD+ G IEL++VYFSYPARP+EQIFSGFS+SI SG TAALVGQ
Sbjct: 367 IGRKPEIDAYDTSGKVSDDVHGSIELKEVYFSYPARPDEQIFSGFSLSIPSGMTAALVGQ 426
Query: 421 SGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNI 480
SGSGKSTVISL+ERFYDPQ+GEVLIDGINLKE+QL+WIR KIGLVSQEPVLFT SI+DNI
Sbjct: 427 SGSGKSTVISLVERFYDPQSGEVLIDGINLKEYQLKWIRGKIGLVSQEPVLFTSSIRDNI 486
Query: 481 AYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKD 540
AYGKD+ATTEEIR A ELANAAKFIDKLPQG+DT+VGEHGTQLSGGQKQRIAIARAILKD
Sbjct: 487 AYGKDEATTEEIRAAAELANAAKFIDKLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKD 546
Query: 541 PRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVE 600
PRILLLDEATSALDAESE++VQEALDRIMVNRTTVIVAHRL+T+RNADMIAVIHRGKIVE
Sbjct: 547 PRILLLDEATSALDAESERIVQEALDRIMVNRTTVIVAHRLTTIRNADMIAVIHRGKIVE 606
Query: 601 KGTHSKLVEDPEGAYSQLIRLQEANKESEQTIDGQRKSEISMESLRHSSHRMSLRRSISR 660
KG+HS+L+ DP+GAY+QLIRLQE N++SE+ +D +++SEIS+ESL SS R SL+RSISR
Sbjct: 607 KGSHSELLADPDGAYAQLIRLQEVNEDSEEAVDERKRSEISLESL--SSQRNSLQRSISR 664
Query: 661 GSS-IGNSSRHSISVSFGLPSG-QFADTALGEPAGPSQPTEEVAPEVPTRRLAYLNKPEI 718
GSS GNS RHS+SV GL +G ++ +L EP Q + PEVP RRLAYLNKPEI
Sbjct: 665 GSSGAGNSHRHSLSVPSGLRTGLNVSENSLAEPEVSLQKKQ--TPEVPIRRLAYLNKPEI 722
Query: 719 PVILAGTIAAMANGVILPIYGLLISSVIETFFKPPHELKKDSRFWALIYLALGAGSFLLS 778
P ++AG+I A+ +GVI P++G+LIS VIE FFKPPHEL+KDS+FWA+I++ + SFL
Sbjct: 723 PELIAGSIGAIIHGVIFPLFGILISRVIEAFFKPPHELRKDSKFWAIIFVIVAVVSFLAC 782
Query: 779 PAQSYFFAVAGNKLIQRIRSMCFEKVIHMEVSWFDEPEHSSGAIGARLSADAASVRALVG 838
AQ YFFAVAG+KLIQRIRSMCFEKV+HMEV WFD PEHSSGAIGARLSADAASVR+LVG
Sbjct: 783 NAQLYFFAVAGSKLIQRIRSMCFEKVVHMEVGWFDVPEHSSGAIGARLSADAASVRSLVG 842
Query: 839 DALARIVQNISTAAAGLIIAFTASWQLALIILVMLPLIGVSGYTQMKFMKGFSADAKMKY 898
D+LA++VQNI++A AGL+IAFTASWQLA IILV++PL G++ Y Q++F+KGFSADAKM Y
Sbjct: 843 DSLAQMVQNIASAVAGLVIAFTASWQLAFIILVIVPLTGLNAYVQLEFLKGFSADAKMMY 902
Query: 899 EEASQVANDAVGSIRTVASFCAEEKVMQLYKKKCEAPMKTGIRQGMVSGGGFGASFFLLF 958
EEASQVANDAVGSIRTVASFCAEEKVMQLY+KKCE P+KTGIRQG+VSG GFG SFFLLF
Sbjct: 903 EEASQVANDAVGSIRTVASFCAEEKVMQLYRKKCEGPLKTGIRQGLVSGIGFGVSFFLLF 962
Query: 959 AFYAASFYAGARLVEDGKATFSDVFKVFFSLTMTAIGISQSSSFSSDSNKAKSAAASIFA 1018
+ YA SFYAGA+LV+ GKATF+DVF+VFF+LT+ A+GISQSSSF+ DS+KAK+A ASIF+
Sbjct: 963 SVYATSFYAGAQLVKHGKATFTDVFQVFFALTVAAMGISQSSSFAPDSSKAKTAVASIFS 1022
Query: 1019 IIDRESKIDPSDESGTILEDVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVG 1078
I+DR+SKIDPSDESG LE+V+G+IE HV+F+YPSRPD+Q+F+DL+L I +GKTVALVG
Sbjct: 1023 ILDRKSKIDPSDESGMTLENVRGDIEFQHVTFRYPSRPDIQIFQDLSLSIHSGKTVALVG 1082
Query: 1079 ESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRAN 1138
ESGSGKST +SLLQRFYDPD+GHITLDGVEIQ+LQLKWLRQQMGLVSQEPVLFN+TIRAN
Sbjct: 1083 ESGSGKSTAISLLQRFYDPDSGHITLDGVEIQRLQLKWLRQQMGLVSQEPVLFNETIRAN 1142
Query: 1139 IAYGKGGDATEAEIQAASEMANAHKFICSLQQ 1170
IAYGK G+A+EAEI AASE+AN+H+FI SLQQ
Sbjct: 1143 IAYGKDGNASEAEILAASELANSHEFISSLQQ 1174
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357442065|ref|XP_003591310.1| ABC transporter B family member [Medicago truncatula] gi|355480358|gb|AES61561.1| ABC transporter B family member [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 1785 bits (4624), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 887/1168 (75%), Positives = 1033/1168 (88%), Gaps = 8/1168 (0%)
Query: 4 ESNSNEASASKSQEEVGKDSSMSGNEHDSEKGKQTEKTESVPFYKLFTFADSADTALMII 63
E+N +EA+ S E+ ++S + + EK K EK E+VPF+KLFTFADS D LMI+
Sbjct: 11 ENNHDEATTS---EKNSTETSSTNVVTNGEKDKTKEKQETVPFHKLFTFADSTDILLMIV 67
Query: 64 GSIGAIGNGLCLPLMTLLFGDLINTFGDNQNNS-ETVDKVSKVAVKFVYLGIGSGIASFL 122
G+IGAIGNGL LPLMTLLFG +I++FG NQ+N+ + V++VSKV++KFVYL +GSG+A+FL
Sbjct: 68 GTIGAIGNGLGLPLMTLLFGQMIDSFGSNQSNTTDVVEQVSKVSLKFVYLAVGSGVAAFL 127
Query: 123 QVTCWMITGERQATRIRGLYLKTILRQDVAFFDNETNTGEVVGRMSGDTVLIQDAMGEKV 182
QV+CWM+TGERQA RIRGLYLKTILRQDV FFD ETNTGEVVGRMSGDTVLIQDAMGEKV
Sbjct: 128 QVSCWMVTGERQAARIRGLYLKTILRQDVTFFDKETNTGEVVGRMSGDTVLIQDAMGEKV 187
Query: 183 GKFLQLMATFLGGFLIAFIKGWLLTLVMLSSIPLLAMSGGVMAIMISKMSSRGQGAYAKA 242
GKFLQL+ATF+GGF+IAF KGWLLT+VM+S++P L +SG MA++I +M+S+GQ AYAKA
Sbjct: 188 GKFLQLIATFIGGFVIAFTKGWLLTVVMMSTLPFLVVSGAAMAVIIGRMASKGQTAYAKA 247
Query: 243 ASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYKSGVQEGLAAGIGLGMVMLIVFCSY 302
A VVEQTIGSIRTVASFTGEKQA+S+Y KFLV AYKSGV EG AG GLG VM ++FC Y
Sbjct: 248 AHVVEQTIGSIRTVASFTGEKQAVSSYSKFLVDAYKSGVFEGTIAGAGLGTVMFVIFCGY 307
Query: 303 ALSVWYGGKLILEEGYNGGQVVNVMVAVLTGSMSLGEASPCLSAFGAGQAAAFKMFETIN 362
AL+VW+G K+I+E+GYNGG V+NV++AVLT SMSLG+ASP +SAF AGQAAA+KMFETI
Sbjct: 308 ALAVWFGAKMIIEKGYNGGTVINVIIAVLTASMSLGQASPSMSAFAAGQAAAYKMFETIK 367
Query: 363 RKPEIDAYDTKGKILDDIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSG 422
R+PEIDAYD GKIL+DI+G+IEL++VYFSYPARP E IF+GFS+ ISSGTTAALVGQSG
Sbjct: 368 RRPEIDAYDPNGKILEDIQGEIELKEVYFSYPARPEELIFNGFSLHISSGTTAALVGQSG 427
Query: 423 SGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAY 482
SGKSTVISL+ERFYDPQAGEVLIDGIN+KE QL+WIR KIGLVSQEPVLF SIKDNIAY
Sbjct: 428 SGKSTVISLVERFYDPQAGEVLIDGINMKELQLRWIRGKIGLVSQEPVLFASSIKDNIAY 487
Query: 483 GKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPR 542
GKD AT EEIR A+ELANAAKFIDKLPQG+DT+VG+HGTQLSGGQKQRIAIARAILK+PR
Sbjct: 488 GKDGATIEEIRSASELANAAKFIDKLPQGLDTMVGDHGTQLSGGQKQRIAIARAILKNPR 547
Query: 543 ILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKG 602
ILLLDEATSALDAESE+VVQEALDRIMVNRTTV+VAHRLSTVRNADMIAVIHRGK+VEKG
Sbjct: 548 ILLLDEATSALDAESERVVQEALDRIMVNRTTVVVAHRLSTVRNADMIAVIHRGKMVEKG 607
Query: 603 THSKLVEDPEGAYSQLIRLQEANKESEQTIDGQRKSEISMESLRHSSHRMSLRRSISRGS 662
THS+L++DPEGAYSQLIRLQE NKESE+T D K E+S ES R SS R SL+RSISRGS
Sbjct: 608 THSELLKDPEGAYSQLIRLQEVNKESEETTDHHGKRELSAESFRQSSQRKSLQRSISRGS 667
Query: 663 SIGNSSRHSISVSFGLPSGQFADTALGEPAGPSQPTEEVAPEVPTRRLAYLNKPEIPVIL 722
SIGNSSRHS SVSFGLP+G + +P PT+E EVP RRLA LNKPEIPV+L
Sbjct: 668 SIGNSSRHSFSVSFGLPTG----VNVADPDLEKVPTKEKEQEVPLRRLASLNKPEIPVLL 723
Query: 723 AGTIAAMANGVILPIYGLLISSVIETFFKPPHELKKDSRFWALIYLALGAGSFLLSPAQS 782
G++AA+ANGVILPI+G+LISSVI+TF++P E+KKDS+FWA++++ LG S ++ PA+
Sbjct: 724 IGSLAAIANGVILPIFGVLISSVIKTFYEPFDEMKKDSKFWAIMFMLLGLASLVVIPARG 783
Query: 783 YFFAVAGNKLIQRIRSMCFEKVIHMEVSWFDEPEHSSGAIGARLSADAASVRALVGDALA 842
YFF+VAG KLIQRIR +CFEKV++MEV WFDEPE+SSGA+GARLSADAASVRALVGDAL
Sbjct: 784 YFFSVAGCKLIQRIRLLCFEKVVNMEVGWFDEPENSSGAVGARLSADAASVRALVGDALG 843
Query: 843 RIVQNISTAAAGLIIAFTASWQLALIILVMLPLIGVSGYTQMKFMKGFSADAKMKYEEAS 902
+VQN+++A AGLIIAF ASWQLALIILV++PLIG++GY QMKFMKGFS DAKM YEEAS
Sbjct: 844 LLVQNLASALAGLIIAFIASWQLALIILVLIPLIGLNGYVQMKFMKGFSGDAKMMYEEAS 903
Query: 903 QVANDAVGSIRTVASFCAEEKVMQLYKKKCEAPMKTGIRQGMVSGGGFGASFFLLFAFYA 962
QVANDAVGSIRTVASFCAE+KVM+LY+KKCE PMKTGIRQG++SG GFG SFFLLF+ YA
Sbjct: 904 QVANDAVGSIRTVASFCAEDKVMELYRKKCEGPMKTGIRQGIISGSGFGVSFFLLFSVYA 963
Query: 963 ASFYAGARLVEDGKATFSDVFKVFFSLTMTAIGISQSSSFSSDSNKAKSAAASIFAIIDR 1022
SFYAGARLV+ G TFSDVF+VFF+LTM AIGISQSSSF+ DS+KAKSA ASIF +ID+
Sbjct: 964 TSFYAGARLVKAGNTTFSDVFRVFFALTMAAIGISQSSSFAPDSSKAKSATASIFGMIDK 1023
Query: 1023 ESKIDPSDESGTILEDVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGS 1082
+SKIDPS+ESGT L+ +KGEIEL H+SFKYPSRPD+Q+FRDLNL I +GKTVALVGESGS
Sbjct: 1024 KSKIDPSEESGTTLDSIKGEIELRHISFKYPSRPDIQIFRDLNLTIHSGKTVALVGESGS 1083
Query: 1083 GKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYG 1142
GKSTV++LLQRFYDPD+G ITLDG+EI++LQLKWLRQQMGLVSQEPVLFNDTIRANIAYG
Sbjct: 1084 GKSTVIALLQRFYDPDSGEITLDGIEIRQLQLKWLRQQMGLVSQEPVLFNDTIRANIAYG 1143
Query: 1143 KGGDATEAEIQAASEMANAHKFICSLQQ 1170
KGG ATEAEI AA+E+ANAH+FI LQQ
Sbjct: 1144 KGGIATEAEIIAAAELANAHRFISGLQQ 1171
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255548257|ref|XP_002515185.1| multidrug resistance protein 1, 2, putative [Ricinus communis] gi|223545665|gb|EEF47169.1| multidrug resistance protein 1, 2, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 1779 bits (4607), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 874/1171 (74%), Positives = 1028/1171 (87%), Gaps = 4/1171 (0%)
Query: 1 MNGESNSNEASASKSQEEVGKDSSMSGNEHDSEKGKQTEKTESVPFYKLFTFADSADTAL 60
++ +++++E S SK EE K + +G+ + EK K EKT SVPF+KLF+FADS D L
Sbjct: 7 IHSDTSTHETSTSKGLEEKDKSARANGHPQEIEKSKGEEKTNSVPFHKLFSFADSVDIVL 66
Query: 61 MIIGSIGAIGNGLCLPLMTLLFGDLINTFGDNQNNSETVDKVSKVAVKFVYLGIGSGIAS 120
MIIG+IGA+GNGL +PLMT+ GD I+ FG+NQNN + VD VSKV++KFVYLGIGS +AS
Sbjct: 67 MIIGTIGALGNGLSMPLMTIFLGDTIDAFGNNQNNQDVVDVVSKVSLKFVYLGIGSSVAS 126
Query: 121 FLQVTCWMITGERQATRIRGLYLKTILRQDVAFFDNETNTGEVVGRMSGDTVLIQDAMGE 180
FLQV CWM+TGERQA RIRGLYLKTILRQD+AFFD ETNTGEV+GRMSGDTVLIQDAMGE
Sbjct: 127 FLQVVCWMVTGERQAARIRGLYLKTILRQDIAFFDKETNTGEVIGRMSGDTVLIQDAMGE 186
Query: 181 KVGKFLQLMATFLGGFLIAFIKGWLLTLVMLSSIPLLAMSGGVMAIMISKMSSRGQGAYA 240
KVGKFLQL++TFLGGF+IAF+KGWLLTLVMLSS+PLL ++G M+IMI+K++SRGQ AYA
Sbjct: 187 KVGKFLQLVSTFLGGFVIAFVKGWLLTLVMLSSLPLLVLAGAAMSIMIAKIASRGQNAYA 246
Query: 241 KAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYKSGVQEGLAAGIGLGMVMLIVFC 300
KAA+VVEQTIGSIRTVASFTGEKQA+ NY+KFL+ AY SG EGL G+GLG+ MLI+FC
Sbjct: 247 KAATVVEQTIGSIRTVASFTGEKQAIRNYEKFLLAAYHSGAHEGLITGLGLGLFMLILFC 306
Query: 301 SYALSVWYGGKLILEEGYNGGQVVNVMVAVLTGSMSLGEASPCLSAFGAGQAAAFKMFET 360
SYAL++W+GGK+ILE+GY GG+V+NV++AVLTGS SLG+ASP ++AF AGQAAA+KMFET
Sbjct: 307 SYALAIWFGGKMILEKGYTGGEVINVIIAVLTGSTSLGQASPSMTAFAAGQAAAYKMFET 366
Query: 361 INRKPEIDAYDTKGKILDDIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQ 420
I RKPEIDAYD GKI DDI G IELR+VYFSYPARP+EQIFSGFS+SI +G TAALVGQ
Sbjct: 367 IGRKPEIDAYDMSGKISDDIHGSIELREVYFSYPARPDEQIFSGFSLSIPNGMTAALVGQ 426
Query: 421 SGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNI 480
SGSGKSTVISLIERFYDPQ GEVLIDGINLKE+QL+WIR+KIGLVSQEPVLFT SI+DNI
Sbjct: 427 SGSGKSTVISLIERFYDPQGGEVLIDGINLKEYQLKWIREKIGLVSQEPVLFTSSIRDNI 486
Query: 481 AYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKD 540
AYGKD ATTEEIR A ELANAAKFIDKLPQG+DT+VGEHGTQLSGGQKQRIAIARAILKD
Sbjct: 487 AYGKDGATTEEIRAAAELANAAKFIDKLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKD 546
Query: 541 PRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVE 600
PRILLLDEATSALDAESE++VQEALDRIMVNRTTVIVAHRL+T+RNAD+IAVIHRG IVE
Sbjct: 547 PRILLLDEATSALDAESERIVQEALDRIMVNRTTVIVAHRLTTIRNADVIAVIHRGNIVE 606
Query: 601 KGTHSKLVEDPEGAYSQLIRLQEANKESEQTIDGQRKSEISMESLRHSSHRMSLRRSISR 660
+G+HS+L+ P+GAYSQLIRLQE N++SE+ +D ++ EIS+ESL S R
Sbjct: 607 QGSHSELLAYPDGAYSQLIRLQEVNEDSEEAVDEHKRPEISLESLS-SQRNSLRRSISRA 665
Query: 661 GSSIGNSSRHSISVSFGLPSG-QFADTALGEPAGPSQPTEEVAPEVPTRRLAYLNKPEIP 719
S +GNS RHS+SVSFGL +G ++ +L EP P PEVP RRLAYLNKPEIP
Sbjct: 666 SSRLGNSHRHSLSVSFGLTTGLNVSENSLAEP--EVSPQNNQTPEVPIRRLAYLNKPEIP 723
Query: 720 VILAGTIAAMANGVILPIYGLLISSVIETFFKPPHELKKDSRFWALIYLALGAGSFLLSP 779
V++AG+IAA+ NGV+ P++G+LIS VIE+FFKPPHEL+KDS+FWA+I++ + S L
Sbjct: 724 VLIAGSIAAIINGVVFPLFGILISRVIESFFKPPHELRKDSKFWAIIFVIVAVVSSLACI 783
Query: 780 AQSYFFAVAGNKLIQRIRSMCFEKVIHMEVSWFDEPEHSSGAIGARLSADAASVRALVGD 839
AQ YFFAVAG+KLIQRIRSMCF+KV+HMEV WFD PEHSSGAIGARLSADAA+VR+LVGD
Sbjct: 784 AQLYFFAVAGSKLIQRIRSMCFDKVVHMEVGWFDVPEHSSGAIGARLSADAAAVRSLVGD 843
Query: 840 ALARIVQNISTAAAGLIIAFTASWQLALIILVMLPLIGVSGYTQMKFMKGFSADAKMKYE 899
+LA++VQNI++A AGLIIAFT+SWQLA IILV++PL G++ Y Q+KF++GFSADAKM YE
Sbjct: 844 SLAQMVQNIASAVAGLIIAFTSSWQLAFIILVIVPLTGLNAYVQLKFLRGFSADAKMMYE 903
Query: 900 EASQVANDAVGSIRTVASFCAEEKVMQLYKKKCEAPMKTGIRQGMVSGGGFGASFFLLFA 959
EASQVANDAVGSIRTVASFCAEEKVMQLY+KKCE P+KTGIRQG++SG GFG SFFLLF+
Sbjct: 904 EASQVANDAVGSIRTVASFCAEEKVMQLYRKKCEGPLKTGIRQGLISGIGFGVSFFLLFS 963
Query: 960 FYAASFYAGARLVEDGKATFSDVFKVFFSLTMTAIGISQSSSFSSDSNKAKSAAASIFAI 1019
YA SFYAGA+LV+ GK TFSDVF+VFF+LTM +GISQSSSF+ DS+KAKSA AS+F+I
Sbjct: 964 VYATSFYAGAQLVKHGKTTFSDVFQVFFALTMATMGISQSSSFAPDSSKAKSAVASVFSI 1023
Query: 1020 IDRESKIDPSDESGTILEDVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGE 1079
+DR+SKIDPSDESG LE+VKGEIE HVSF+YPSRPD+Q+F+DL+L I +GKTVALVGE
Sbjct: 1024 LDRKSKIDPSDESGMTLENVKGEIEFRHVSFRYPSRPDIQIFQDLSLSIHSGKTVALVGE 1083
Query: 1080 SGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANI 1139
SGSGKST +SLLQRFYDPD+GHITLDGVEIQ+LQLKWLRQQMGLVSQEPVLFNDTIRANI
Sbjct: 1084 SGSGKSTAISLLQRFYDPDSGHITLDGVEIQRLQLKWLRQQMGLVSQEPVLFNDTIRANI 1143
Query: 1140 AYGKGGDATEAEIQAASEMANAHKFICSLQQ 1170
AYGK G+A+EAEI AASE+AN+H+FI SLQQ
Sbjct: 1144 AYGKDGNASEAEILAASELANSHEFISSLQQ 1174
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 1198 | ||||||
| TAIR|locus:2196145 | 1278 | ABCB11 "ATP-binding cassette B | 0.949 | 0.890 | 0.677 | 0.0 | |
| TAIR|locus:2041434 | 1286 | ABCB4 "ATP-binding cassette B4 | 0.946 | 0.881 | 0.683 | 0.0 | |
| TAIR|locus:2196135 | 1273 | ABCB12 "ATP-binding cassette B | 0.959 | 0.903 | 0.658 | 0.0 | |
| TAIR|locus:2141350 | 1229 | ABCB3 "ATP-binding cassette B3 | 0.494 | 0.481 | 0.721 | 0.0 | |
| TAIR|locus:2141365 | 1230 | ABCB5 "ATP-binding cassette B5 | 0.499 | 0.486 | 0.719 | 0.0 | |
| TAIR|locus:2151496 | 1248 | ABCB7 "ATP-binding cassette B7 | 0.506 | 0.486 | 0.617 | 0.0 | |
| TAIR|locus:2117656 | 1236 | ABCB9 "ATP-binding cassette B9 | 0.658 | 0.638 | 0.600 | 6.4e-256 | |
| TAIR|locus:2090734 | 1252 | ABCB19 "ATP-binding cassette B | 0.489 | 0.468 | 0.488 | 1.6e-239 | |
| DICTYBASE|DDB_G0293438 | 1397 | abcB2 "ABC transporter B famil | 0.762 | 0.653 | 0.404 | 4.5e-233 | |
| UNIPROTKB|Q0JCP1 | 1259 | Os04g0459000 "Os04g0459000 pro | 0.929 | 0.884 | 0.406 | 1.2e-232 |
| TAIR|locus:2196145 ABCB11 "ATP-binding cassette B11" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 3968 (1401.9 bits), Expect = 0., P = 0.
Identities = 780/1151 (67%), Positives = 921/1151 (80%)
Query: 23 SSMSGNEHDSEKGKQTEKTESVPFYKLFTFADSADTALMIIGSIGAIGNGLCLPLMTLLF 82
S G E E+ K EK +VPFYKLF FADS+D LMI GSIGAIGNG+ LP MTLLF
Sbjct: 21 SPKEGEETKKEE-KSEEKANTVPFYKLFAFADSSDVLLMICGSIGAIGNGMSLPFMTLLF 79
Query: 83 GDLINTFGDNQNNSETVDKVSKVAVKFVYLGIGSGIASFLQVTCWMITGERQATRIRGLY 142
GDLI++FG NQNN + VD VSKV +KFVYLG+G+ A+FLQV CWMITGERQA RIR Y
Sbjct: 80 GDLIDSFGKNQNNKDIVDVVSKVCLKFVYLGLGTLGAAFLQVACWMITGERQAARIRSTY 139
Query: 143 LKTILRQDVAFFDNETNTGEVVGRMSGDTVLIQDAMGEKVGKFLQLMATFLGGFLIAFIK 202
LKTILRQD+ FFD ETNTGEVVGRMSGDTVLIQDAMGEKVGKF+QL++TF+GGF++AFIK
Sbjct: 140 LKTILRQDIGFFDVETNTGEVVGRMSGDTVLIQDAMGEKVGKFIQLVSTFVGGFVLAFIK 199
Query: 203 GWLLTLVMLSSIPLLAMSGGVMAIMISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGE 262
GWLLTLVML+SIPLLAM+G MA+++++ SSRGQ AYAKAA+VVEQTIGSIRTVASFTGE
Sbjct: 200 GWLLTLVMLTSIPLLAMAGAAMALIVTRASSRGQAAYAKAATVVEQTIGSIRTVASFTGE 259
Query: 263 KQAMSNYKKFLVTAYKSGVQEGLAAGIGLGMVMLIVFCSYALSVWYGGKLILEEGYNGGQ 322
KQA+++YKKF+ +AYKS +Q+G + G+GLG++ + F SYAL++W+GGK+ILE+GY GG
Sbjct: 260 KQAINSYKKFITSAYKSSIQQGFSTGLGLGVMFFVFFSSYALAIWFGGKMILEKGYTGGA 319
Query: 323 VVNVMVAVLTGSMSLGEASPCLSAFGAGQAAAFKMFETINRKPEIDAYDTKGKILDDIRG 382
V+NV++ V+ GSMSLG+ SPC++AF AGQAAA+KMFETI RKP IDAYD GK+L+DIRG
Sbjct: 320 VINVIIIVVAGSMSLGQTSPCVTAFAAGQAAAYKMFETIKRKPLIDAYDVNGKVLEDIRG 379
Query: 383 DIELRDVYFSYPARPNEQXXXXXXXXXXXXTTAALVGQSGSGKSTVISLIERFYDPQAGE 442
DIEL+DV+FSYPARP+E+ TAALVG+SGSGKSTVISLIERFYDP++G
Sbjct: 380 DIELKDVHFSYPARPDEEIFDGFSLFIPSGATAALVGESGSGKSTVISLIERFYDPKSGA 439
Query: 443 VLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAA 502
VLIDG+NLKEFQL+WIR KIGLVSQEPVLF+ SI +NIAYGK++AT EEI+ ATELANAA
Sbjct: 440 VLIDGVNLKEFQLKWIRSKIGLVSQEPVLFSSSIMENIAYGKENATVEEIKAATELANAA 499
Query: 503 KFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQ 562
KFIDKLPQG+DT+VGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESE+VVQ
Sbjct: 500 KFIDKLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQ 559
Query: 563 EALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVEDPEGAYSQLIRLQ 622
EALDR+MVNRTTVIVAHRLSTVRNADMIAVIHRGK+VEKG+HS+L++D EGAYSQLIRLQ
Sbjct: 560 EALDRVMVNRTTVIVAHRLSTVRNADMIAVIHRGKMVEKGSHSELLKDSEGAYSQLIRLQ 619
Query: 623 EANKESEQTIDGQRKSEIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-XFGLPSG 681
E NK+ + SE+ GL G
Sbjct: 620 EINKDV-------KTSELSSGSSFRNSNLKKSMEGTSSVGNSSRHHSLNVLGLTTGLDLG 672
Query: 682 QFADTALGEPAGPSQPTEEVAPEVPTRRLAYLNKPEIPVILAGTIAAMANGVILPIYGLL 741
+ A + G + ++E P+V R+A LNKPEIPV+L GT+AA NG I P++G+L
Sbjct: 673 SHSQRAGQDETGTA--SQEPLPKVSLTRIAALNKPEIPVLLLGTVAAAINGAIFPLFGIL 730
Query: 742 ISSVIETFFKPPHELKKDSRFWALIYLALGAGSFLLSPAQSYFFAVAGNKLIQRIRSMCF 801
IS VIE FFKP HELK+DSRFWA+I++ALG S ++SP Q Y FAVAG KLI+RIRSMCF
Sbjct: 731 ISRVIEAFFKPAHELKRDSRFWAIIFVALGVTSLIVSPTQMYLFAVAGGKLIRRIRSMCF 790
Query: 802 EKVIHMEVSWFDEPEHSSGAIGARLSADAASVRALVGDALARIVQNISTAAAGLIIAFTA 861
EK +HMEV+WFDEP++SSG +GARLSADA +RALVGDAL+ VQN+++AA+GLIIAFTA
Sbjct: 791 EKAVHMEVAWFDEPQNSSGTMGARLSADATLIRALVGDALSLAVQNVASAASGLIIAFTA 850
Query: 862 SWQLALIILVMLPLIGVSGYTQMKFMKGFSADAKMKYEEASQVANDAVGSIRTVASFCAE 921
SW+LALIILVMLPLIG++G+ Q+KFMKGFSADAK KYEEASQVANDAVGSIRTVASFCAE
Sbjct: 851 SWELALIILVMLPLIGINGFVQVKFMKGFSADAKSKYEEASQVANDAVGSIRTVASFCAE 910
Query: 922 EKVMQLYKKKCEAPMKTGIRQGMVSXXXXXXXXXXXXXXXXXXXXXXXRLVEDGKATFSD 981
EKVMQ+YKK+CE P+K GI+QG +S RLVEDGK TF++
Sbjct: 911 EKVMQMYKKQCEGPIKDGIKQGFISGLGFGFSFFILFCVYATSFYAGARLVEDGKTTFNN 970
Query: 982 VFKVFFSLTMTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRESKIDPSDESGTILEDVKG 1041
VF+VFF+LTM R+SKID SDE+GT+LE+VKG
Sbjct: 971 VFQVFFALTMAAIGISQSSTFAPDSSKAKVAAASIFAIIDRKSKIDSSDETGTVLENVKG 1030
Query: 1042 EIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGH 1101
+IEL H+SF YP+RPD+Q+FRDL L IRAGKTVALVGESGSGKSTV+SLLQRFYDPD+GH
Sbjct: 1031 DIELRHLSFTYPARPDIQIFRDLCLTIRAGKTVALVGESGSGKSTVISLLQRFYDPDSGH 1090
Query: 1102 ITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGD--ATEAEIQAASEMA 1159
ITLDGVE++KLQLKWLRQQMGLV QEPVLFNDTIRANIAYGKG + ATE+EI AA+E+A
Sbjct: 1091 ITLDGVELKKLQLKWLRQQMGLVGQEPVLFNDTIRANIAYGKGSEEAATESEIIAAAELA 1150
Query: 1160 NAHKFICSLQQ 1170
NAHKFI S+QQ
Sbjct: 1151 NAHKFISSIQQ 1161
|
|
| TAIR|locus:2041434 ABCB4 "ATP-binding cassette B4" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 3965 (1400.8 bits), Expect = 0., P = 0.
Identities = 778/1139 (68%), Positives = 917/1139 (80%)
Query: 33 EKGKQTEKTESVPFYKLFTFADSADTALMIIGSIGAIGNGLCLPLMTLLFGDLINTFGDN 92
+K ++ EKT++VPFYKLF FADS D LMI+G++G+IGNGL PLMTLLFGDLI+ FG+N
Sbjct: 35 KKDEEHEKTKTVPFYKLFAFADSFDFLLMILGTLGSIGNGLGFPLMTLLFGDLIDAFGEN 94
Query: 93 QNNSETVDKVSKVAVKFVYLGIGSGIASFLQVTCWMITGERQATRIRGLYLKTILRQDVA 152
Q N T DKVSKVA+KFV+LGIG+ A+FLQ++ WMI+GERQA RIR LYLKTILRQD+A
Sbjct: 95 QTN--TTDKVSKVALKFVWLGIGTFAAAFLQLSGWMISGERQAARIRSLYLKTILRQDIA 152
Query: 153 FFDNETNTGEVVGRMSGDTVLIQDAMGEKVGKFLQLMATFLGGFLIAFIKGWLLTLVMLS 212
FFD +TNTGEVVGRMSGDTVLIQDAMGEKVGK +QL+ATF+GGF+IAF++GWLLTLVMLS
Sbjct: 153 FFDIDTNTGEVVGRMSGDTVLIQDAMGEKVGKAIQLLATFVGGFVIAFVRGWLLTLVMLS 212
Query: 213 SIPLLAMSGGVMAIMISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQAMSNYKKF 272
SIPLL M+G ++AI+I+K +SRGQ AYAKAA+VVEQTIGSIRTVASFTGEKQA+SNY K
Sbjct: 213 SIPLLVMAGALLAIVIAKTASRGQTAYAKAATVVEQTIGSIRTVASFTGEKQAISNYNKH 272
Query: 273 LVTAYKSGVQEGLAAGIGLGMVMLIVFCSYALSVWYGGKLILEEGYNGGQVVNVMVAVLT 332
LVTAYK+GV EG + G+GLG + L+VFCSYAL+VWYGGKLIL++GY GGQV+N+++AVLT
Sbjct: 273 LVTAYKAGVIEGGSTGLGLGTLFLVVFCSYALAVWYGGKLILDKGYTGGQVLNIIIAVLT 332
Query: 333 GSMSLGEASPCLSAFGAGQAAAFKMFETINRKPEIDAYDTKGKILDDIRGDIELRDVYFS 392
GSMSLG+ SPCLSAF AGQAAA+KMFETI R+P ID+Y T GK+LDDI+GDIEL+DVYF+
Sbjct: 333 GSMSLGQTSPCLSAFAAGQAAAYKMFETIERRPNIDSYSTNGKVLDDIKGDIELKDVYFT 392
Query: 393 YPARPNEQXXXXXXXXXXXXTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKE 452
YPARP+EQ TT ALVGQSGSGKSTV+SLIERFYDPQAG+VLIDGINLKE
Sbjct: 393 YPARPDEQIFRGFSLFISSGTTVALVGQSGSGKSTVVSLIERFYDPQAGDVLIDGINLKE 452
Query: 453 FQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGI 512
FQL+WIR KIGLVSQEPVLFT SIKDNIAYGK+DATTEEI+ A ELANA+KF+DKLPQG+
Sbjct: 453 FQLKWIRSKIGLVSQEPVLFTASIKDNIAYGKEDATTEEIKAAAELANASKFVDKLPQGL 512
Query: 513 DTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNR 572
DT+VGEHGTQLSGGQKQRIA+ARAILKDPRILLLDEATSALDAESE+VVQEALDRIMVNR
Sbjct: 513 DTMVGEHGTQLSGGQKQRIAVARAILKDPRILLLDEATSALDAESERVVQEALDRIMVNR 572
Query: 573 TTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVEDPEGAYSQLIRLQEANKESEQTI 632
TTV+VAHRLSTVRNADMIAVIH+GKIVEKG+H++L++DPEGAYSQLIRLQE K E
Sbjct: 573 TTVVVAHRLSTVRNADMIAVIHQGKIVEKGSHTELLKDPEGAYSQLIRLQEEKKSDENAA 632
Query: 633 DGQRKSEIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFGLPSGQFADTALG-EP 691
+ Q+ S I FG P+G + E
Sbjct: 633 EEQKMSSIESFKQSSLRKSSLGRSLSKGGSSRGNSSRHSFNM-FGFPAGIDGNVVQDQEE 691
Query: 692 AGPSQPTEEVAPEVPTRRLAYLNKPEIPVILAGTIAAMANGVILPIYGLLISSVIETFFK 751
+QP E +V R+A LNKPEIPV++ G+I+A ANGVILPI+G+LISSVI+ FF+
Sbjct: 692 DDTTQPKTE-PKKVSIFRIAALNKPEIPVLILGSISAAANGVILPIFGILISSVIKAFFQ 750
Query: 752 PPHELKKDSRFWALIYLALGAGSFLLSPAQSYFFAVAGNKLIQRIRSMCFEKVIHMEVSW 811
PP +LK+D+ FWA+I++ LG S + PAQ++FFA+AG KL+QRIRSMCFEKV+HMEV W
Sbjct: 751 PPKKLKEDTSFWAIIFMVLGFASIIAYPAQTFFFAIAGCKLVQRIRSMCFEKVVHMEVGW 810
Query: 812 FDEPEHSSGAIGARLSADAASVRALVGDALARIVQNISTAAAGLIIAFTASWQLALIILV 871
FDEPE+SSG IGARLSADAA++R LVGD+LA+ VQN+S+ AGLIIAF A WQLA ++L
Sbjct: 811 FDEPENSSGTIGARLSADAATIRGLVGDSLAQTVQNLSSILAGLIIAFLACWQLAFVVLA 870
Query: 872 MLPLIGVSGYTQMKFMKGFSADAKMKYEEASQVANDAVGSIRTVASFCAEEKVMQLYKKK 931
MLPLI ++G+ MKFMKGFSADAK Y EASQVANDAVGSIRTVASFCAE+KVM +Y KK
Sbjct: 871 MLPLIALNGFLYMKFMKGFSADAKKMYGEASQVANDAVGSIRTVASFCAEDKVMNMYSKK 930
Query: 932 CEAPMKTGIRQGMVSXXXXXXXXXXXXXXXXXXXXXXXRLVEDGKATFSDVFKVFFSLTM 991
CE PMK GIRQG+VS RLV+DGK TF VF+VFF+LTM
Sbjct: 931 CEGPMKNGIRQGIVSGIGFGFSFFVLFSSYAASFYVGARLVDDGKTTFDSVFRVFFALTM 990
Query: 992 TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRESKIDPSDESGTILEDVKGEIELHHVSFK 1051
RESKIDPS ESG +L++VKG+IEL HVSFK
Sbjct: 991 AAMAISQSSSLSPDSSKADVAAASIFAIMDRESKIDPSVESGRVLDNVKGDIELRHVSFK 1050
Query: 1052 YPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQK 1111
YP+RPDVQ+F+DL L IRAGKTVALVGESGSGKSTV++LLQRFYDPD+G ITLDGVEI+
Sbjct: 1051 YPARPDVQIFQDLCLSIRAGKTVALVGESGSGKSTVIALLQRFYDPDSGEITLDGVEIKS 1110
Query: 1112 LQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQ 1170
L+LKWLRQQ GLVSQEP+LFN+TIRANIAYGKGGDA+E+EI +++E++NAH FI LQQ
Sbjct: 1111 LRLKWLRQQTGLVSQEPILFNETIRANIAYGKGGDASESEIVSSAELSNAHGFISGLQQ 1169
|
|
| TAIR|locus:2196135 ABCB12 "ATP-binding cassette B12" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 3868 (1366.7 bits), Expect = 0., P = 0.
Identities = 763/1158 (65%), Positives = 907/1158 (78%)
Query: 19 VGKDSSMSGNE--HDSEKGKQTEKTESVPFYKLFTFADSADTALMIIGSIGAIGNGLCLP 76
+ +D + G+ H+ K EK ++VP YKLF FADS D LMI GS+GAIGNG+CLP
Sbjct: 1 MNRDGAGEGDSVSHEHSTSKTDEKAKTVPLYKLFAFADSFDVFLMICGSLGAIGNGVCLP 60
Query: 77 LMTLLFGDLINTFGDNQNNSETVDKVSKVAVKFVYLGIGSGIASFLQVTCWMITGERQAT 136
LMTLLFGDLI++FG NQNN + VD VSKV +KFVYLG+G A+FLQV CWMITGERQA
Sbjct: 61 LMTLLFGDLIDSFGKNQNNKDIVDVVSKVCLKFVYLGLGRLGAAFLQVACWMITGERQAA 120
Query: 137 RIRGLYLKTILRQDVAFFDNETNTGEVVGRMSGDTVLIQDAMGEKVGKFLQLMATFLGGF 196
+IR YLKTILRQD+ FFD ETNTGEVVGRMSGDTV IQDAMGEKVGKF+QL++TF+GGF
Sbjct: 121 KIRSNYLKTILRQDIGFFDVETNTGEVVGRMSGDTVHIQDAMGEKVGKFIQLVSTFVGGF 180
Query: 197 LIAFIKGWLLTLVMLSSIPLLAMSGGVMAIMISKMSSRGQGAYAKAASVVEQTIGSIRTV 256
+AF KGWLLTLVML+SIP LAM+G MA+++++ SSRGQ AYAKAA+VVEQTIGSIRTV
Sbjct: 181 ALAFAKGWLLTLVMLTSIPFLAMAGAAMALLVTRASSRGQAAYAKAATVVEQTIGSIRTV 240
Query: 257 ASFTGEKQAMSNYKKFLVTAYKSGVQEGLAAGIGLGMVMLIVFCSYALSVWYGGKLILEE 316
ASFTGEKQA+++YKK++ +AYKS +Q+G + G+GLG+++ + F SYAL++W+GGK+ILE+
Sbjct: 241 ASFTGEKQAINSYKKYITSAYKSSIQQGFSTGLGLGVMIYVFFSSYALAIWFGGKMILEK 300
Query: 317 GYNGGQVVNVMVAVLTGSMSLGEASPCLSAFGAGQAAAFKMFETINRKPEIDAYDTKGKI 376
GY GG V+NV++ V+ GSMSLG+ SPC++AF AGQAAA+KMFETI RKP IDAYD GK+
Sbjct: 301 GYTGGSVINVIIIVVAGSMSLGQTSPCVTAFAAGQAAAYKMFETIKRKPLIDAYDVNGKV 360
Query: 377 LDDIRGDIELRDVYFSYPARPNEQXXXXXXXXXXXXTTAALVGQSGSGKSTVISLIERFY 436
L DIRGDIEL+DV+FSYPARP+E+ TAALVG+SGSGKSTVI+LIERFY
Sbjct: 361 LGDIRGDIELKDVHFSYPARPDEEIFDGFSLFIPSGATAALVGESGSGKSTVINLIERFY 420
Query: 437 DPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVAT 496
DP+AGEVLIDGINLKEFQL+WIR KIGLV QEPVLF+ SI +NIAYGK++AT +EI+VAT
Sbjct: 421 DPKAGEVLIDGINLKEFQLKWIRSKIGLVCQEPVLFSSSIMENIAYGKENATLQEIKVAT 480
Query: 497 ELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAE 556
ELANAAKFI+ LPQG+DT VGEHGTQLSGGQKQRIAIARAILKDPR+LLLDEATSALD E
Sbjct: 481 ELANAAKFINNLPQGLDTKVGEHGTQLSGGQKQRIAIARAILKDPRVLLLDEATSALDTE 540
Query: 557 SEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVEDPEGAYS 616
SE+VVQEALDR+MVNRTTV+VAHRLSTVRNADMIAVIH GK+VEKG+HS+L++D GAYS
Sbjct: 541 SERVVQEALDRVMVNRTTVVVAHRLSTVRNADMIAVIHSGKMVEKGSHSELLKDSVGAYS 600
Query: 617 QLIRLQEANKESE-QTIDGQRKSEIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 675
QLIR QE NK + + D S
Sbjct: 601 QLIRCQEINKGHDAKPSDMASGSSFRNSNLNISREGSVISGGTSSFGNSSRHHSLNVLGL 660
Query: 676 F-GLPSGQFADTALGEPAGPSQPTEEVAPEVPTRRLAYLNKPEIPVILAGTIAAMANGVI 734
F GL G + E G + ++E +V R+A LNKPEIPV+L GT+ A NG I
Sbjct: 661 FAGLDLGSGSQRVGQEETGTT--SQEPLRKVSLTRIAALNKPEIPVLLLGTVVAAINGAI 718
Query: 735 LPIYGLLISSVIETFFKPPHELKKDSRFWALIYLALGAGSFLLSPAQSYFFAVAGNKLIQ 794
P++G+LIS VIE FFKP +LKKDSRFWA+I++ALG S ++SP+Q Y FAVAG KLI+
Sbjct: 719 FPLFGILISRVIEAFFKPADQLKKDSRFWAIIFVALGVTSLIVSPSQMYLFAVAGGKLIR 778
Query: 795 RIRSMCFEKVIHMEVSWFDEPEHSSGAIGARLSADAASVRALVGDALARIVQNISTAAAG 854
RI+SMCFEK +HMEVSWFDEPE+SSG +GARLS DAA +RALVGDAL+ VQN ++AA+G
Sbjct: 779 RIQSMCFEKAVHMEVSWFDEPENSSGTMGARLSTDAALIRALVGDALSLAVQNAASAASG 838
Query: 855 LIIAFTASWQLALIILVMLPLIGVSGYTQMKFMKGFSADAKMKYEEASQVANDAVGSIRT 914
LIIAFTASW+LALIILVMLPLIG++G+ Q+KFMKGFSADAK KYEEASQVANDAVGSIRT
Sbjct: 839 LIIAFTASWELALIILVMLPLIGINGFLQVKFMKGFSADAKSKYEEASQVANDAVGSIRT 898
Query: 915 VASFCAEEKVMQLYKKKCEAPMKTGIRQGMVSXXXXXXXXXXXXXXXXXXXXXXXRLVED 974
VASFCAEEKVMQ+Y K+CE P+K G++QG +S RLVED
Sbjct: 899 VASFCAEEKVMQMYNKQCEGPIKDGVKQGFISGLGFGFSFFILFCVYATSFYAAARLVED 958
Query: 975 GKATFSDVFKVFFSLTMTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRESKIDPSDESGT 1034
GK TF DVF+VFF+LTM R+SKID SDE+GT
Sbjct: 959 GKTTFIDVFQVFFALTMAAIGISQSSTFAPDSSKAKVAAASIFAIIDRKSKIDSSDETGT 1018
Query: 1035 ILEDVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRF 1094
+LE+VKG+IEL H+SF YP+RP +Q+FRDL L IRAGKTVALVGESGSGKSTV+SLLQRF
Sbjct: 1019 VLENVKGDIELRHLSFTYPARPGIQIFRDLCLTIRAGKTVALVGESGSGKSTVISLLQRF 1078
Query: 1095 YDPDAGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGD--ATEAEI 1152
YDPD+G ITLDGVE++KLQLKWLRQQMGLV QEPVLFNDTIRANIAYGKG + ATE+EI
Sbjct: 1079 YDPDSGQITLDGVELKKLQLKWLRQQMGLVGQEPVLFNDTIRANIAYGKGSEEAATESEI 1138
Query: 1153 QAASEMANAHKFICSLQQ 1170
AA+E+ANAHKFI S+QQ
Sbjct: 1139 IAAAELANAHKFISSIQQ 1156
|
|
| TAIR|locus:2141350 ABCB3 "ATP-binding cassette B3" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2231 (790.4 bits), Expect = 0., Sum P(2) = 0.
Identities = 427/592 (72%), Positives = 518/592 (87%)
Query: 39 EKTESVPFYKLFTFADSADTALMIIGSIGAIGNGLCLPLMTLLFGDLINTFGDNQNNSET 98
EKT++VPFYKLF+F+DS D LMI+GSIGAIGNG+ PLMTLLFGDLI++ G NQ+N +
Sbjct: 3 EKTKTVPFYKLFSFSDSTDVLLMIVGSIGAIGNGVGFPLMTLLFGDLIDSIGQNQSNKDI 62
Query: 99 VDKVSKVAVKFVYLGIGSGIASFLQVTCWMITGERQATRIRGLYLKTILRQDVAFFDNET 158
V+ VSKV +KFVYLG+G+ A+FLQV CWMITGERQA RIR LYLKTILRQD+ FFD ET
Sbjct: 63 VEIVSKVCLKFVYLGLGTLGAAFLQVACWMITGERQAARIRSLYLKTILRQDIGFFDVET 122
Query: 159 NTGEVVGRMSGDTVLIQDAMGEKVGKFLQLMATFLGGFLIAFIKGWLLTLVMLSSIPLLA 218
+TGEVVGRMSGDTVLI +AMGEKVGKF+QL+ATF+GGF++AF+KGWLLTLVML SIPLLA
Sbjct: 123 STGEVVGRMSGDTVLILEAMGEKVGKFIQLIATFVGGFVLAFVKGWLLTLVMLVSIPLLA 182
Query: 219 MSGGVMAIMISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYK 278
++G M I++++ SSR Q AYAKA++VVEQT+GSIRTVASFTGEKQAM +Y++F+ AY+
Sbjct: 183 IAGAAMPIIVTRASSREQAAYAKASTVVEQTLGSIRTVASFTGEKQAMKSYREFINLAYR 242
Query: 279 SGVQEGLAAGIGLGMVMLIVFCSYALSVWYGGKLILEEGYNGGQVVNVMVAVLTGSMSLG 338
+ V++G + G+GLG+V + FCSYAL++W+GG++IL++GY GG+VVNVMV V+ SMSLG
Sbjct: 243 ASVKQGFSMGLGLGVVFFVFFCSYALAIWFGGEMILKKGYTGGEVVNVMVTVVASSMSLG 302
Query: 339 EASPCLSAFGAGQAAAFKMFETINRKPEIDAYDTKGKILDDIRGDIELRDVYFSYPARPN 398
+ +PCL+AF AG+AAA+KMFETI RKP IDA+D GK+L+DIRG+IELRDV FSYPARP
Sbjct: 303 QTTPCLTAFAAGKAAAYKMFETIERKPSIDAFDLNGKVLEDIRGEIELRDVCFSYPARPM 362
Query: 399 EQXXXXXXXXXXXXTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWI 458
E+ TAALVG+SGSGKS+VISLIERFYDP +G VLIDG+NLKEFQL+WI
Sbjct: 363 EEVFGGFSLLIPSGATAALVGESGSGKSSVISLIERFYDPSSGSVLIDGVNLKEFQLKWI 422
Query: 459 RKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGE 518
R KIGLVSQEPVLF+ SI +NI YGK++AT EEI+ A +LANAA FIDKLP+G++TLVGE
Sbjct: 423 RGKIGLVSQEPVLFSSSIMENIGYGKENATVEEIQAAAKLANAANFIDKLPRGLETLVGE 482
Query: 519 HGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVA 578
HGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESE+VVQEALDR+M++RTTVIVA
Sbjct: 483 HGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDRVMMSRTTVIVA 542
Query: 579 HRLSTVRNADMIAVIHRGKIVEKGTHSKLVEDPEGAYSQLIRLQEANKESEQ 630
HRLSTVRNADMIAVIHRGKIVE+G+HS+L++D EGAY+QLIRLQ+ KE ++
Sbjct: 543 HRLSTVRNADMIAVIHRGKIVEEGSHSELLKDHEGAYAQLIRLQKIKKEPKR 594
|
|
| TAIR|locus:2141365 ABCB5 "ATP-binding cassette B5" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2225 (788.3 bits), Expect = 0., Sum P(2) = 0.
Identities = 430/598 (71%), Positives = 515/598 (86%)
Query: 33 EKGKQTEKTESVPFYKLFTFADSADTALMIIGSIGAIGNGLCLPLMTLLFGDLINTFGDN 92
+KG T++VPFYKLF F+DS D LMI+GSIGAI NG+C PLMTLLFG+LI+ G N
Sbjct: 2 KKGNLEANTKTVPFYKLFFFSDSTDVLLMIVGSIGAIANGVCSPLMTLLFGELIDAMGPN 61
Query: 93 QNNSETVDKVSKVAVKFVYLGIGSGIASFLQVTCWMITGERQATRIRGLYLKTILRQDVA 152
QNN E V++VSKV + VYLG+G+ A+FLQV CWMITGERQA RIR LYLKTILRQD+
Sbjct: 62 QNNEEIVERVSKVCLSLVYLGLGALGAAFLQVACWMITGERQAARIRSLYLKTILRQDIG 121
Query: 153 FFDNETNTGEVVGRMSGDTVLIQDAMGEKVGKFLQLMATFLGGFLIAFIKGWLLTLVMLS 212
FFD E TGEVVGRMSGDTVLI DAMGEKVGKF+QL++TF+GGF+IAF++GWLLTLVML+
Sbjct: 122 FFDVEMTTGEVVGRMSGDTVLILDAMGEKVGKFIQLISTFVGGFVIAFLRGWLLTLVMLT 181
Query: 213 SIPLLAMSGGVMAIMISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQAMSNYKKF 272
SIPLLAMSG +AI++++ SS+ Q AYAKA++VVEQT+GSIRTVASFTGEKQAMS+YK+
Sbjct: 182 SIPLLAMSGAAIAIIVTRASSQEQAAYAKASNVVEQTLGSIRTVASFTGEKQAMSSYKEL 241
Query: 273 LVTAYKSGVQEGLAAGIGLGMVMLIVFCSYALSVWYGGKLILEEGYNGGQVVNVMVAVLT 332
+ AYKS V++G G+GLG++ L+ F +YAL W+GG++IL +GY GG V+NVMV V++
Sbjct: 242 INLAYKSNVKQGFVTGLGLGVMFLVFFSTYALGTWFGGEMILRKGYTGGAVINVMVTVVS 301
Query: 333 GSMSLGEASPCLSAFGAGQAAAFKMFETINRKPEIDAYDTKGKILDDIRGDIELRDVYFS 392
S++LG+ASPCL+AF AG+AAA+KMFETI R+P ID +D GK+L+DIRG+IELRDV FS
Sbjct: 302 SSIALGQASPCLTAFTAGKAAAYKMFETIEREPLIDTFDLNGKVLEDIRGEIELRDVCFS 361
Query: 393 YPARPNEQXXXXXXXXXXXXTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKE 452
YPARP E+ TT ALVG+SGSGKSTVISLIERFYDP +G+VLIDG++LKE
Sbjct: 362 YPARPKEEVFGGFSLLIPSGTTTALVGESGSGKSTVISLIERFYDPNSGQVLIDGVDLKE 421
Query: 453 FQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGI 512
FQL+WIR KIGLVSQEPVLF+ SI +NI YGK+ AT EEI+ A++LANAAKFIDKLP G+
Sbjct: 422 FQLKWIRGKIGLVSQEPVLFSSSIMENIGYGKEGATVEEIQAASKLANAAKFIDKLPLGL 481
Query: 513 DTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNR 572
+TLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESE+VVQEALDRIMVNR
Sbjct: 482 ETLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDRIMVNR 541
Query: 573 TTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVEDPEGAYSQLIRLQEANKESEQ 630
TTVIVAHRLSTVRNAD+IAVIHRGKIVE+G+HS+L++D EGAYSQL+RLQE NKES++
Sbjct: 542 TTVIVAHRLSTVRNADIIAVIHRGKIVEEGSHSELLKDHEGAYSQLLRLQEINKESKR 599
|
|
| TAIR|locus:2151496 ABCB7 "ATP-binding cassette B7" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2009 (712.3 bits), Expect = 0., Sum P(2) = 0.
Identities = 379/614 (61%), Positives = 498/614 (81%)
Query: 32 SEKGKQTEK----TESVPFYKLFTFADSADTALMIIGSIGAIGNGLCLPLMTLLFGDLIN 87
+EK K+ + + + FYKLFTFAD D LM+IG++ A+ NGL P M++L G LIN
Sbjct: 2 AEKAKKKKNGGGGNQRIAFYKLFTFADRYDIVLMVIGTLSAMANGLTQPFMSILMGQLIN 61
Query: 88 TFGDNQNNSETVDKVSKVAVKFVYLGIGSGIASFLQVTCWMITGERQATRIRGLYLKTIL 147
FG + ++ +VSKVAVKF+YL +G+ SFLQV+CWM+TGERQ+TRIR LYLKTIL
Sbjct: 62 VFGFSDHD-HVFKEVSKVAVKFLYLAAYAGVVSFLQVSCWMVTGERQSTRIRRLYLKTIL 120
Query: 148 RQDVAFFDNETNTGEVVGRMSGDTVLIQDAMGEKVGKFLQLMATFLGGFLIAFIKGWLLT 207
RQD+ FFD ETNTGEV+GRMSGDT+LIQD+MGEKVGKF QL+++F+GGF +AFI G LT
Sbjct: 121 RQDIGFFDTETNTGEVIGRMSGDTILIQDSMGEKVGKFTQLVSSFVGGFTVAFIVGMKLT 180
Query: 208 LVMLSSIPLLAMSGGVMAIMISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQAMS 267
L +L +PL+ +GG M ++SK + R Q AY +A +VV+Q +GSIRTV +FTGEKQ+M
Sbjct: 181 LALLPCVPLIVGTGGAMTYIMSKKAQRVQLAYTEAGNVVQQAVGSIRTVVAFTGEKQSMG 240
Query: 268 NYKKFLVTAYKSGVQEGLAAGIGLGMVMLIVFCSYALSVWYGGKLILEEGYNGGQVVNVM 327
Y+K L AYKS V++GL +G+G+G++M++V+C+Y ++WYG + I+E+GY GGQV+NV+
Sbjct: 241 KYEKKLEIAYKSMVKQGLYSGLGIGIMMVVVYCTYGFAIWYGARQIIEKGYTGGQVMNVI 300
Query: 328 VAVLTGSMSLGEASPCLSAFGAGQAAAFKMFETINRKPEIDAYDTKGKILDDIRGDIELR 387
++LTG M+LG+ P L++F AG AAA+KMFETI RKP+IDAYD G++L++I+GDIELR
Sbjct: 301 TSILTGGMALGQTLPSLNSFAAGTAAAYKMFETIKRKPKIDAYDMSGEVLEEIKGDIELR 360
Query: 388 DVYFSYPARPNEQXXXXXXXXXXXXTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDG 447
DVYF YPARP+ Q T ALVGQSGSGKSTVISLIERFYDP++GEVLIDG
Sbjct: 361 DVYFRYPARPDVQIFVGFSLTVPNGMTVALVGQSGSGKSTVISLIERFYDPESGEVLIDG 420
Query: 448 INLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDK 507
I+LK+FQ++WIR KIGLVSQEP+LF +I++NI YGK DA+ +EIR A +LANA+ FIDK
Sbjct: 421 IDLKKFQVKWIRSKIGLVSQEPILFATTIRENIVYGKKDASDQEIRTALKLANASNFIDK 480
Query: 508 LPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDR 567
LPQG++T+VGEHGTQLSGGQKQRIAIARAILK+P+ILLLDEATSALDAESE++VQ+AL +
Sbjct: 481 LPQGLETMVGEHGTQLSGGQKQRIAIARAILKNPKILLLDEATSALDAESERIVQDALVK 540
Query: 568 IMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVEDPEGAYSQLIRLQEANKE 627
+M++RTTV+VAHRL+T+R ADMIAV+ +GK++EKGTH ++++DPEG YSQL+RLQE +K+
Sbjct: 541 LMLSRTTVVVAHRLTTIRTADMIAVVQQGKVIEKGTHDEMIKDPEGTYSQLVRLQEGSKK 600
Query: 628 SEQTIDGQ-RKSEI 640
E+ ID + K E+
Sbjct: 601 -EEAIDKEPEKCEM 613
|
|
| TAIR|locus:2117656 ABCB9 "ATP-binding cassette B9" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2448 (866.8 bits), Expect = 6.4e-256, Sum P(2) = 6.4e-256
Identities = 481/801 (60%), Positives = 597/801 (74%)
Query: 29 EHDSEKGKQTEKTESVPFYKLFTFADSADTALMIIGSIGAIGNGLCLPLMTLLFGDLINT 88
E S K K + V F+KLF+FAD D LM +G+I A GNGL P MTL+FG LIN
Sbjct: 2 EEKSSK-KNDGGNQKVSFFKLFSFADKTDVVLMTVGTIAAAGNGLTQPFMTLIFGQLINA 60
Query: 89 FGDNQNNSETVDKVSKVAVKFVYLGIGSGIASFLQVTCWMITGERQATRIRGLYLKTILR 148
FG + V +V KVAVKF+YL + S + +FLQV+CWM+TGERQ+ IRGLYLKTILR
Sbjct: 61 FGTTDPD-HMVREVWKVAVKFIYLAVYSCVVAFLQVSCWMVTGERQSATIRGLYLKTILR 119
Query: 149 QDVAFFDNETNTGEVVGRMSGDTVLIQDAMGEKVGKFLQLMATFLGGFLIAFIKGWLLTL 208
QD+ +FD ETNTGEV+GRMSGDT+LIQDAMGEKVGKF QL+ TFLGGF IAF KG LL
Sbjct: 120 QDIGYFDTETNTGEVIGRMSGDTILIQDAMGEKVGKFTQLLCTFLGGFAIAFYKGPLLAG 179
Query: 209 VMLSSIPLLAMSGGVMAIMISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQAMSN 268
V+ S IPL+ ++G M++++SKM+ RGQ AYA+A +VVEQT+G+IRTV +FTGEKQA
Sbjct: 180 VLCSCIPLIVIAGAAMSLIMSKMAGRGQVAYAEAGNVVEQTVGAIRTVVAFTGEKQATEK 239
Query: 269 YKKFLVTAYKSGVQEGLAAGIGLGMVMLIVFCSYALSVWYGGKLILEEGYNGGQVVNVMV 328
Y+ L AYK+ VQ+GL +G GLG ++ ++FCSY L+VWYG KLI+E+GYNGGQV+NV+
Sbjct: 240 YESKLEIAYKTVVQQGLISGFGLGTMLAVIFCSYGLAVWYGAKLIMEKGYNGGQVINVIF 299
Query: 329 AVLTGSMSLGEASPCLSAFGAGQAAAFKMFETINRKPEIDAYDTKGKILDDIRGDIELRD 388
AVLTG MSLG+ SP L+AF AG+AAAFKMFETI R P+IDAYD G +L+DIRGDIEL+D
Sbjct: 300 AVLTGGMSLGQTSPSLNAFAAGRAAAFKMFETIKRSPKIDAYDMSGSVLEDIRGDIELKD 359
Query: 389 VYFSYPARPNEQXXXXXXXXXXXXTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGI 448
VYF YPARP+ Q T ALVGQSGSGKSTVISLIERFYDP++G+VLID I
Sbjct: 360 VYFRYPARPDVQIFAGFSLFVPNGKTVALVGQSGSGKSTVISLIERFYDPESGQVLIDNI 419
Query: 449 NLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKL 508
+LK+ QL+WIR KIGLVSQEPVLF +IK+NIAYGK+DAT +EIR A ELANAAKFIDKL
Sbjct: 420 DLKKLQLKWIRSKIGLVSQEPVLFATTIKENIAYGKEDATDQEIRTAIELANAAKFIDKL 479
Query: 509 PQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRI 568
PQG+DT+VGEHGTQ+SGGQKQR+AIARAILK+P+ILLLDEATSALDAESE++VQ+AL +
Sbjct: 480 PQGLDTMVGEHGTQMSGGQKQRLAIARAILKNPKILLLDEATSALDAESERIVQDALVNL 539
Query: 569 MVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVEDPEGAYSQLIRLQEANKES 628
M NRTTV+VAHRL+T+R AD+IAV+H+GKIVEKGTH ++++DPEGAYSQL+RLQE +KE
Sbjct: 540 MSNRTTVVVAHRLTTIRTADVIAVVHQGKIVEKGTHDEMIQDPEGAYSQLVRLQEGSKE- 598
Query: 629 EQTIDGQRKSEIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFGLPSGQFADTAL 688
E T + +R F L S F
Sbjct: 599 EAT-ESERPE------TSLDVERSGSLRLSSAMRRSVSRNSSSSRHSFSLASNMFFPGVN 651
Query: 689 GEPAGPSQPTEEVA--PEVPTRRLAYLNKPEIPVILAGTIAAMANGVILPIYGLLISSVI 746
+ E +V +RLA+LNKPEIPV++ G+IAAM +G + PI+GLL+SS I
Sbjct: 652 VNQTDEMEDEENNVRHKKVSLKRLAHLNKPEIPVLVLGSIAAMVHGTVFPIFGLLLSSSI 711
Query: 747 ETFFKPPHELKKDSRFWALIYLALGAGSFLLSPAQSYFFAVAGNKLIQRIRSMCFEKVIH 806
F++P LKKDS FWALIY+ALG +F++ P Q+YFF +AG KLI+RIRSMCF+KV+H
Sbjct: 712 NMFYEPAKILKKDSHFWALIYIALGLTNFVMIPVQNYFFGIAGGKLIKRIRSMCFDKVVH 771
Query: 807 MEVSWFDEPEHSSGAIGARLS 827
E+SWFD+ +S +G L+
Sbjct: 772 QEISWFDDTANSRSLVGDALA 792
|
|
| TAIR|locus:2090734 ABCB19 "ATP-binding cassette B19" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1476 (524.6 bits), Expect = 1.6e-239, Sum P(2) = 1.6e-239
Identities = 287/588 (48%), Positives = 400/588 (68%)
Query: 37 QTEKTESVPFYKLFTFADSADTALMIIGSIGAIGNGLCLPLMTLLFGDLINTFGDNQNN- 95
+ +K +S+PF+KLF+FAD D LM +GS+GAI +G +P+ LLFG ++N FG NQ +
Sbjct: 17 EKKKEQSLPFFKLFSFADKFDYLLMFVGSLGAIVHGSSMPVFFLLFGQMVNGFGKNQMDL 76
Query: 96 SETVDKVSKVAVKFVYLGIGSGIASFLQVTCWMITGERQATRIRGLYLKTILRQDVAFFD 155
+ V +VS+ ++ FVYLG+ +S+ ++ CWM +GERQ +R YL+ +L+QDV FFD
Sbjct: 77 HQMVHEVSRYSLYFVYLGLVVCFSSYAEIACWMYSGERQVAALRKKYLEAVLKQDVGFFD 136
Query: 156 NETNTGEVVGRMSGDTVLIQDAMGEKVGKFLQLMATFLGGFLIAFIKGWLLTLVMLSSIP 215
+ TG++V +S DT+L+QDA+ EKVG F+ ++TFL G ++ F+ W L L+ ++ IP
Sbjct: 137 TDARTGDIVFSVSTDTLLVQDAISEKVGNFIHYLSTFLAGLVVGFVSAWKLALLSVAVIP 196
Query: 216 LLAMSGGVMAIMISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVT 275
+A +GG+ A ++ ++S+ + +YA A + EQ I +RTV S+ GE +A++ Y +
Sbjct: 197 GIAFAGGLYAYTLTGITSKSRESYANAGVIAEQAIAQVRTVYSYVGESKALNAYSDAIQY 256
Query: 276 AYKSGVQEGLAAGIGLGMVMLIVFCSYALSVWYGGKLILEEGYNGGQVVNVMVAVLTGSM 335
K G + G+A G+GLG I S+AL WY G I +GG+ + + + G M
Sbjct: 257 TLKLGYKAGMAKGLGLGCTYGIACMSWALVFWYAGVFIRNGQTDGGKAFTAIFSAIVGGM 316
Query: 336 SLGEASPCLSAFGAGQAAAFKMFETINRKPEIDAYDTKGKILDDIRGDIELRDVYFSYPA 395
SLG++ L AF G+AA +K+ E IN++P I GK LD + G+IE +DV FSYP+
Sbjct: 317 SLGQSFSNLGAFSKGKAAGYKLMEIINQRPTIIQDPLDGKCLDQVHGNIEFKDVTFSYPS 376
Query: 396 RPNEQXXXXXXXXXXXXTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQL 455
RP+ T A+VG SGSGKSTV+SLIERFYDP +G++L+DG+ +K QL
Sbjct: 377 RPDVMIFRNFNIFFPSGKTVAVVGGSGSGKSTVVSLIERFYDPNSGQILLDGVEIKTLQL 436
Query: 456 QWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTL 515
+++R++IGLV+QEP LF +I +NI YGK DAT E+ A ANA FI LP+G DT
Sbjct: 437 KFLREQIGLVNQEPALFATTILENILYGKPDATMVEVEAAASAANAHSFITLLPKGYDTQ 496
Query: 516 VGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTV 575
VGE G QLSGGQKQRIAIARA+LKDP+ILLLDEATSALDA SE +VQEALDR+MV RTTV
Sbjct: 497 VGERGVQLSGGQKQRIAIARAMLKDPKILLLDEATSALDASSESIVQEALDRVMVGRTTV 556
Query: 576 IVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVEDPEGAYSQLIRLQE 623
+VAHRL T+RN D IAVI +G++VE GTH +L+ GAY+ LIR QE
Sbjct: 557 VVAHRLCTIRNVDSIAVIQQGQVVETGTHEELIAK-SGAYASLIRFQE 603
|
|
| DICTYBASE|DDB_G0293438 abcB2 "ABC transporter B family protein" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Score = 1862 (660.5 bits), Expect = 4.5e-233, Sum P(2) = 4.5e-233
Identities = 379/937 (40%), Positives = 584/937 (62%)
Query: 23 SSMSGNEHDSEKGKQTEKTESVPFYKLFTFADSADTALMIIGSIGAIGNGLCLPLMTLLF 82
S+ + D + K+ E VPF+ LF FA D LMIIG+IGA+ NG+ +P ++++F
Sbjct: 102 STTQSKKLDEGEKKEGEVGPQVPFFSLFRFAKPFDILLMIIGTIGALANGVSMPAISIVF 161
Query: 83 GDLINTFG-DN--QNNSETVDKVSKVAVKFVYLGIGSGIASFLQVTCWMITGERQATRIR 139
G L+N+F +N N + V+ V+ A+ F+Y+G G + S+++V WM+ GERQA R R
Sbjct: 162 GRLMNSFSPENLADPNFDLVETVTSNAMYFIYIGCGVFVCSYVEVAFWMLAGERQAVRCR 221
Query: 140 GLYLKTILRQDVAFFDNETNTGEVVGRMSGDTVLIQDAMGEKVGKFLQLMATFLGGFLIA 199
YLK IL+Q++ ++D T + E+ R+S DT+L Q+A+GEK+G FL +TF+ GF++
Sbjct: 222 KAYLKAILKQEIGWYD-VTKSSELSTRISSDTLLFQEAIGEKIGNFLHHTSTFICGFIVG 280
Query: 200 FIKGWLLTLVMLSSIPLLAMSGGVMAIMISKMSSRGQGAYAKAASVVEQTIGSIRTVASF 259
F+ GW LTLV+ + PL+A +G M M++ ++ +GQ AYAKA V E+ IGSIRTV++F
Sbjct: 281 FVNGWQLTLVIFALTPLIAAAGAFMTKMMADLTKKGQDAYAKAGGVAEEKIGSIRTVSTF 340
Query: 260 TGEKQAMSNYKKFLVTAYKSGVQEGLAAGIGLGMVMLIVFCSYALSVWYGGKLILEEGYN 319
+GE + Y + L A G ++G+ GIG+G+V L++F +Y+LS WYGGKLI++ +N
Sbjct: 341 SGEPFEVKRYTERLKEALDIGTKKGIMNGIGIGLVFLVLFGTYSLSFWYGGKLIVDRKWN 400
Query: 320 --------GGQVVNVMVAVLTGSMSLGEASPCLSAFGAGQAAAFKMFETINRKPEIDAYD 371
GG V+ V +V+ G+M+LG+ASP +++F G+ AAFK++E ++R +ID +
Sbjct: 401 PVPDRPWQGGDVLTVFFSVIMGAMALGQASPNVASFANGRGAAFKIYEVVDRNSKIDPFS 460
Query: 372 TKGKILDD-IRGDIELRDVYFSYPARPNEQXXXXXXXXXXXXTTAALVGQSGSGKSTVIS 430
T+G+ +++ ++G+IE R++ FSYP+RP+ + TT ALVG SG GKS+VI
Sbjct: 461 TEGRSIEETVQGNIEYRNIGFSYPSRPDVKIFNNFNLTIKKGTTVALVGDSGGGKSSVIG 520
Query: 431 LIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTE 490
L+ERFYDP GEV +DG N+KE + +R+ IGLVSQEPVLF SI +NI YG ++AT +
Sbjct: 521 LLERFYDPDEGEVYLDGTNIKEINIHSLRRNIGLVSQEPVLFANSIAENIRYGNENATMD 580
Query: 491 EIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEAT 550
+I A + ANA FI LP+G DT VGE G Q+SGGQKQRIAIARA++KDP+ILLLDEAT
Sbjct: 581 QIIEACKTANAHDFISALPEGYDTQVGEKGVQMSGGQKQRIAIARAMIKDPKILLLDEAT 640
Query: 551 SALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVED 610
SALD+++E +VQ++++++M+ RTT+++AHRLST+++AD IAV+ G IVE GTH +L
Sbjct: 641 SALDSQNELLVQQSIEKLMIGRTTIVIAHRLSTIQDADQIAVVKGGAIVEIGTHPELYA- 699
Query: 611 PEGAYSQLIRLQEANKESEQTIDGQRKSEIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 670
G Y+QL+ Q+ + D ++K +
Sbjct: 700 LNGVYTQLVNRQQKGGDDG---DKKKKKKSKESSKDESNNNIGPSSISIDKSIQSIGADS 756
Query: 671 XXXXXFGLPSGQFADTALGEPAGPSQPTEEVAPEVPTRRLAYLNKPEIPVILAGTIAAMA 730
GL + D + +P E+ VP R+ L++ + P L G + A
Sbjct: 757 LETSTIGLVNDN--DNKKKKKK-EKKPQEK---SVPIGRILKLSRGDWPHFLIGLVGATL 810
Query: 731 NGVILPIYGLLISSVIETFFKPP-HELKKDSRFWALIYLALGAGSFLLSPAQSYFFAVAG 789
NG I+P++ ++ S ++ F + EL + SR AL ++ L + L + Q Y F G
Sbjct: 811 NGAIMPVFSIIFSEILGIFQEQDTDELTRRSRNMALWFILLAVVAALANFIQIYCFTFIG 870
Query: 790 NKLIQRIRSMCFEKVIHMEVSWFDEPEHSSGAIGARLSADAASVRALVGDALARIVQNIS 849
KL +R + FE ++ ++ WFD E+S+G + A L+ +A V+ + L ++QNI
Sbjct: 871 EKLTFNLRRLSFESIMRQDIGWFDLTENSTGRLTANLATEATLVQGMTSQRLGLLIQNIV 930
Query: 850 TAAAGLIIAFTASWQLALIILVMLPLIGVSGYTQMKFMKGFSADAKMKYEEASQVANDAV 909
T AGL+IAF + W+L L++L +P+IG +G +M F +GFS K Y E QVA++A+
Sbjct: 931 TIVAGLVIAFVSGWKLTLVVLACVPVIGFAGKVEMDFFQGFSQKGKEAYAECGQVASEAI 990
Query: 910 GSIRTVASFCAEEKVMQLYKKKCEAPMKTGIRQGMVS 946
G IRTV+SF E K+++ +++ + P++ R+ VS
Sbjct: 991 GGIRTVSSFTCENKILEKFRQCLQKPIQMSFRKSNVS 1027
|
|
| UNIPROTKB|Q0JCP1 Os04g0459000 "Os04g0459000 protein" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
|---|
Score = 2244 (795.0 bits), Expect = 1.2e-232, P = 1.2e-232
Identities = 460/1132 (40%), Positives = 681/1132 (60%)
Query: 42 ESVPFYKLFTFADSADTALMIIGSIGAIGNGLCLPLMTLLFGDLINTFGDNQNNSETV-D 100
+SV F++LF FAD D LM GS GA+ +G +P+ LLFG+LIN FG NQ++ + D
Sbjct: 27 QSVAFHELFGFADPLDWLLMAAGSAGAVVHGAAMPVFFLLFGELINGFGKNQHSLRRMTD 86
Query: 101 KVSKVAVKFVYLGIGSGIASFLQVTCWMITGERQATRIRGLYLKTILRQDVAFFDNETNT 160
+VSK ++ FVYLG+ +S+L++ CWM TGERQ +R YL+ +LRQDV FFD + T
Sbjct: 87 EVSKYSLYFVYLGLVVCASSYLEIACWMYTGERQVGALRRRYLEAVLRQDVGFFDTDART 146
Query: 161 GEVVGRMSGDTVLIQDAMGEKVGKFLQLMATFLGGFLIAFIKGWLLTLVMLSSIPLLAMS 220
G+VV +S DT+L+QDA+GEKVG F+ ++TFL G ++ F+ W L L+ ++ IP +A +
Sbjct: 147 GDVVFSVSTDTLLVQDAIGEKVGNFIHYLSTFLAGLVVGFVSAWRLALLSIAVIPGIAFA 206
Query: 221 GGVMAIMISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYKSG 280
GG+ A ++ ++S+ + +YA A + EQ I +RTV S+ GE +A+++Y + + K G
Sbjct: 207 GGLYAYTLTGLTSKSRDSYANAGIIAEQAIAQVRTVYSYVGESKALNSYSEAIQNTLKLG 266
Query: 281 VQEGLAAGIGLGMVMLIVFCSYALSVWYGGKLILEEGYNGGQVVNVMVAVLTGSMSLGEA 340
+ G+A G+G+G I S+AL WY G I +GG+ + + + G +SLG++
Sbjct: 267 YKAGMAKGLGIGCTYGIACMSWALVFWYAGVFIRNGQTDGGKAFTAIFSAIVGGLSLGQS 326
Query: 341 SPCLSAFGAGQAAAFKMFETINRKPEIDAYDTKGKILDDIRGDIELRDVYFSYPARPNEQ 400
L AF G+ A +K+ E I ++P I G+ LD++ G+IE ++V FSYP+RP+
Sbjct: 327 FSNLGAFSKGKIAGYKLLEVIRQRPTIVQDPADGRCLDEVHGNIEFKEVAFSYPSRPDVM 386
Query: 401 XXXXXXXXXXXXTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRK 460
TAA+VG SGSGKSTV++LIERFYDP G+VL+D +++K QL+W+R
Sbjct: 387 IFRDFSLFFPAGKTAAVVGGSGSGKSTVVALIERFYDPNQGQVLLDNVDIKTLQLKWLRD 446
Query: 461 KIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHG 520
+IGLV+QEP LF +I +NI YGK DAT E+ A ANA FI LP G +T VGE G
Sbjct: 447 QIGLVNQEPALFATTILENILYGKPDATMAEVEAAATSANAHSFIALLPNGYNTQVGERG 506
Query: 521 TQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHR 580
QLSGGQKQRIAIARA+LK+P+ILLLDEATSALDA SE +VQEALDR+MV RTTV+VAHR
Sbjct: 507 LQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSENIVQEALDRLMVGRTTVVVAHR 566
Query: 581 LSTVRNADMIAVIHRGKIVEKGTHSKLV-EDPEGAYSQLIRLQEANKESEQTIDGQRKSE 639
LST+R DMIAVI +G++VE GTH +L+ + GAY+ LIR QE + + RKS
Sbjct: 567 LSTIRCVDMIAVIQQGQVVETGTHDELLAKGSSGAYAALIRFQEMARNRDFRGPSTRKSR 626
Query: 640 IXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFGLPSGQFADTALGEPAGPSQPTE 699
+ +G AD + + +
Sbjct: 627 ------------SSRLSNSLSTRSLSLRSGSLRNLSYSYSTG--ADGRIEMVSNADNDRK 672
Query: 700 EVAPEVPTRRLAYLNKPEIPVILAGTIAAMANGVILPIYGLLISSVIETF-FKPPHELKK 758
AP+ +L LN PE P + G I ++ +G I P + +++S++IE F F+ P+ +++
Sbjct: 673 YPAPKGYFFKLLKLNAPEWPYTILGAIGSILSGFIGPTFAIVMSNMIEVFYFRDPNAMER 732
Query: 759 DSRFWALIYLALGAGSFLLSPAQSYFFAVAGNKLIQRIRSMCFEKVIHMEVSWFDEPEHS 818
+R + IY+ G + + Q YFF++ G L R+R M ++ +V WFD+ E++
Sbjct: 733 KTREYVFIYIGTGLYAVVAYLVQHYFFSIMGENLTTRVRRMMLAAILRNDVGWFDQEENN 792
Query: 819 SGAIGARLSADAASVRALVGDALARIVQNISTAAAGLIIAFTASWQLALIILVMLPLIGV 878
S + ARLS DAA V++ + + ++ I+QN+++ ++ F W++A++ILV PL+ +
Sbjct: 793 SSLVAARLSTDAADVKSAIAERISVILQNMTSLLVSFVVGFIIEWRVAVLILVTFPLLVL 852
Query: 879 SGYTQMKFMKGFSADAKMKYEEASQVANDAVGSIRTVASFCAEEKVMQLYKKKCEAPMKT 938
+ + Q MKGF+ D + + S +A + V +IRTVA+F A++KV+ L+ + P
Sbjct: 853 ANFAQQLSMKGFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNAQDKVLSLFCTELRVPQMH 912
Query: 939 GIRQGMVSXXXXXXXXXXXXXXXXXXXXXXXRLVEDGKATFSDVFKVFFSLTMTXXXXXX 998
+R+ +S LV +TFS V KVF L +T
Sbjct: 913 SLRRSQISGALFGLSQLSLYASEALILWYGAHLVRHHVSTFSKVIKVFVVLVITANTVAE 972
Query: 999 XXXXXXXXXXXXXXXXXXXXXXXRESKIDPSDESGTILEDVKGEIELHHVSFKYPSRPDV 1058
++IDP + +E V+G+I+ HV F YPSRPDV
Sbjct: 973 TVSLAPEIVRGGESIRSVFAILNYRTRIDPDEPETEPVESVRGDIDFRHVDFAYPSRPDV 1032
Query: 1059 QVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLR 1118
VF+D +L+IRAG++ ALVG SGSGKSTV++L++RFYDP AG + +DG +I++L ++ LR
Sbjct: 1033 MVFKDFSLRIRAGQSQALVGASGSGKSTVIALIERFYDPLAGKVMIDGKDIRRLNVRSLR 1092
Query: 1119 QQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQ 1170
++GLV QEPVLF +I NIAYGK G ATE E+ A+++AN H F+ +L +
Sbjct: 1093 LKIGLVQQEPVLFATSIFENIAYGKDG-ATEEEVIEAAKVANMHGFVSALPE 1143
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries 
Original result of BLAST against SWISS-PROT
ID ![]() | Name ![]() | Annotated EC number ![]() | Identity ![]() | Query coverage ![]() | Hit coverage ![]() | RBH(Q2H) ![]() | RBH(H2Q) ![]() |
| P36619 | PMD1_SCHPO | No assigned EC number | 0.3395 | 0.9515 | 0.8370 | yes | no |
| Q9M1Q9 | AB21B_ARATH | No assigned EC number | 0.7341 | 0.9332 | 0.8626 | no | no |
| P21448 | MDR1_CRIGR | 3, ., 6, ., 3, ., 4, 4 | 0.3968 | 0.9290 | 0.8722 | yes | no |
| P08183 | MDR1_HUMAN | 3, ., 6, ., 3, ., 4, 4 | 0.3941 | 0.9298 | 0.8703 | yes | no |
| O80725 | AB4B_ARATH | No assigned EC number | 0.7435 | 0.9365 | 0.8724 | no | no |
| P21447 | MDR1A_MOUSE | 3, ., 6, ., 3, ., 4, 4 | 0.3972 | 0.9307 | 0.8738 | yes | no |
| Q9FWX8 | AB12B_ARATH | No assigned EC number | 0.7155 | 0.9440 | 0.8884 | no | no |
| Q54BT3 | ABCB2_DICDI | No assigned EC number | 0.4199 | 0.9540 | 0.8181 | yes | no |
| Q9FWX7 | AB11B_ARATH | No assigned EC number | 0.7365 | 0.9307 | 0.8724 | yes | no |
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
| Your Input: | |||||||||||
| estExt_fgenesh4_pm.C_LG_XIV0249 | multidrug/pheromone exporter, MDR family, ABC transporter family (1294 aa) | ||||||||||
(Populus trichocarpa) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 1198 | |||
| cd03249 | 238 | cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassett | 1e-137 | |
| TIGR02204 | 576 | TIGR02204, MsbA_rel, ABC transporter, permease/ATP | 1e-133 | |
| COG1132 | 567 | COG1132, MdlB, ABC-type multidrug transport system | 1e-132 | |
| TIGR00958 | 711 | TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) | 1e-130 | |
| PTZ00265 | 1466 | PTZ00265, PTZ00265, multidrug resistance protein ( | 1e-124 | |
| COG2274 | 709 | COG2274, SunT, ABC-type bacteriocin/lantibiotic ex | 1e-111 | |
| cd03251 | 234 | cd03251, ABCC_MsbA, ATP-binding cassette domain of | 1e-110 | |
| TIGR02203 | 571 | TIGR02203, MsbA_lipidA, lipid A export permease/AT | 1e-108 | |
| PRK11176 | 582 | PRK11176, PRK11176, lipid transporter ATP-binding/ | 9e-97 | |
| cd03253 | 236 | cd03253, ABCC_ATM1_transporter, ATP-binding casset | 4e-96 | |
| cd03254 | 229 | cd03254, ABCC_Glucan_exporter_like, ATP-binding ca | 7e-96 | |
| PRK13657 | 588 | PRK13657, PRK13657, cyclic beta-1,2-glucan ABC tra | 6e-89 | |
| COG1132 | 567 | COG1132, MdlB, ABC-type multidrug transport system | 2e-82 | |
| cd03248 | 226 | cd03248, ABCC_TAP, ATP-binding cassette domain of | 1e-81 | |
| TIGR01846 | 694 | TIGR01846, type_I_sec_HlyB, type I secretion syste | 3e-81 | |
| cd03228 | 171 | cd03228, ABCC_MRP_Like, ATP-binding cassette domai | 1e-79 | |
| cd03252 | 237 | cd03252, ABCC_Hemolysin, ATP-binding cassette doma | 1e-78 | |
| COG5265 | 497 | COG5265, ATM1, ABC-type transport system involved | 4e-78 | |
| TIGR00958 | 711 | TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) | 7e-72 | |
| cd03245 | 220 | cd03245, ABCC_bacteriocin_exporters, ATP-binding c | 6e-70 | |
| TIGR03796 | 710 | TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin syste | 1e-69 | |
| TIGR02204 | 576 | TIGR02204, MsbA_rel, ABC transporter, permease/ATP | 1e-67 | |
| TIGR02203 | 571 | TIGR02203, MsbA_lipidA, lipid A export permease/AT | 1e-66 | |
| COG4988 | 559 | COG4988, CydD, ABC-type transport system involved | 1e-66 | |
| TIGR01192 | 585 | TIGR01192, chvA, glucan exporter ATP-binding prote | 8e-66 | |
| TIGR03375 | 694 | TIGR03375, type_I_sec_LssB, type I secretion syste | 4e-65 | |
| TIGR02857 | 529 | TIGR02857, CydD, thiol reductant ABC exporter, Cyd | 5e-65 | |
| cd03249 | 238 | cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassett | 2e-63 | |
| TIGR03797 | 686 | TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin syste | 2e-63 | |
| TIGR01193 | 708 | TIGR01193, bacteriocin_ABC, ABC-type bacteriocin t | 5e-63 | |
| cd03244 | 221 | cd03244, ABCC_MRP_domain2, ATP-binding cassette do | 7e-63 | |
| COG4987 | 573 | COG4987, CydC, ABC-type transport system involved | 8e-62 | |
| PRK11160 | 574 | PRK11160, PRK11160, cysteine/glutathione ABC trans | 3e-60 | |
| PRK11174 | 588 | PRK11174, PRK11174, cysteine/glutathione ABC trans | 2e-59 | |
| PTZ00265 | 1466 | PTZ00265, PTZ00265, multidrug resistance protein ( | 2e-58 | |
| PRK10789 | 569 | PRK10789, PRK10789, putative multidrug transporter | 4e-58 | |
| PRK10790 | 592 | PRK10790, PRK10790, putative multidrug transporter | 6e-57 | |
| COG2274 | 709 | COG2274, SunT, ABC-type bacteriocin/lantibiotic ex | 2e-55 | |
| PRK11176 | 582 | PRK11176, PRK11176, lipid transporter ATP-binding/ | 9e-55 | |
| TIGR02868 | 530 | TIGR02868, CydC, thiol reductant ABC exporter, Cyd | 1e-49 | |
| cd03251 | 234 | cd03251, ABCC_MsbA, ATP-binding cassette domain of | 2e-49 | |
| cd03260 | 227 | cd03260, ABC_PstB_phosphate_transporter, ATP-bindi | 9e-49 | |
| pfam00664 | 274 | pfam00664, ABC_membrane, ABC transporter transmemb | 2e-48 | |
| PRK13657 | 588 | PRK13657, PRK13657, cyclic beta-1,2-glucan ABC tra | 2e-46 | |
| cd03246 | 173 | cd03246, ABCC_Protease_Secretion, ATP-binding cass | 4e-44 | |
| TIGR01842 | 544 | TIGR01842, type_I_sec_PrtD, type I secretion syste | 1e-43 | |
| cd03247 | 178 | cd03247, ABCC_cytochrome_bd, ATP-binding cassette | 1e-43 | |
| COG1135 | 339 | COG1135, AbcC, ABC-type metal ion transport system | 3e-43 | |
| cd03228 | 171 | cd03228, ABCC_MRP_Like, ATP-binding cassette domai | 1e-42 | |
| cd03225 | 211 | cd03225, ABC_cobalt_CbiO_domain1, First domain of | 1e-42 | |
| COG4618 | 580 | COG4618, ArpD, ABC-type protease/lipase transport | 2e-42 | |
| cd03369 | 207 | cd03369, ABCC_NFT1, ATP-binding cassette domain 2 | 2e-42 | |
| cd03261 | 235 | cd03261, ABC_Org_Solvent_Resistant, ATP-binding ca | 1e-41 | |
| cd03253 | 236 | cd03253, ABCC_ATM1_transporter, ATP-binding casset | 2e-41 | |
| cd03258 | 233 | cd03258, ABC_MetN_methionine_transporter, ATP-bind | 2e-41 | |
| cd03257 | 228 | cd03257, ABC_NikE_OppD_transporters, ATP-binding c | 6e-41 | |
| pfam00664 | 274 | pfam00664, ABC_membrane, ABC transporter transmemb | 8e-41 | |
| COG1117 | 253 | COG1117, PstB, ABC-type phosphate transport system | 2e-40 | |
| cd03254 | 229 | cd03254, ABCC_Glucan_exporter_like, ATP-binding ca | 6e-40 | |
| cd03248 | 226 | cd03248, ABCC_TAP, ATP-binding cassette domain of | 8e-40 | |
| cd03259 | 213 | cd03259, ABC_Carb_Solutes_like, ATP-binding casset | 1e-39 | |
| COG1122 | 235 | COG1122, CbiO, ABC-type cobalt transport system, A | 3e-39 | |
| PRK14250 | 241 | PRK14250, PRK14250, phosphate ABC transporter ATP- | 9e-39 | |
| cd03229 | 178 | cd03229, ABC_Class3, ATP-binding cassette domain o | 1e-38 | |
| cd03250 | 204 | cd03250, ABCC_MRP_domain1, ATP-binding cassette do | 1e-38 | |
| cd03293 | 220 | cd03293, ABC_NrtD_SsuB_transporters, ATP-binding c | 2e-38 | |
| COG3842 | 352 | COG3842, PotA, ABC-type spermidine/putrescine tran | 3e-38 | |
| TIGR03375 | 694 | TIGR03375, type_I_sec_LssB, type I secretion syste | 4e-38 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 4e-38 | |
| COG1131 | 293 | COG1131, CcmA, ABC-type multidrug transport system | 5e-38 | |
| PLN03130 | 1622 | PLN03130, PLN03130, ABC transporter C family membe | 1e-37 | |
| COG1136 | 226 | COG1136, SalX, ABC-type antimicrobial peptide tran | 2e-37 | |
| COG1126 | 240 | COG1126, GlnQ, ABC-type polar amino acid transport | 2e-37 | |
| TIGR00972 | 247 | TIGR00972, 3a0107s01c2, phosphate ABC transporter, | 2e-37 | |
| COG1120 | 258 | COG1120, FepC, ABC-type cobalamin/Fe3+-siderophore | 3e-37 | |
| PTZ00265 | 1466 | PTZ00265, PTZ00265, multidrug resistance protein ( | 7e-37 | |
| COG3839 | 338 | COG3839, MalK, ABC-type sugar transport systems, A | 8e-37 | |
| cd03288 | 257 | cd03288, ABCC_SUR2, ATP-binding cassette domain 2 | 3e-36 | |
| COG1125 | 309 | COG1125, OpuBA, ABC-type proline/glycine betaine t | 3e-36 | |
| cd03295 | 242 | cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cas | 6e-36 | |
| TIGR02857 | 529 | TIGR02857, CydD, thiol reductant ABC exporter, Cyd | 2e-35 | |
| cd03255 | 218 | cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding casse | 2e-35 | |
| COG1127 | 263 | COG1127, Ttg2A, ABC-type transport system involved | 3e-35 | |
| TIGR00957 | 1522 | TIGR00957, MRP_assoc_pro, multi drug resistance-as | 4e-35 | |
| COG1124 | 252 | COG1124, DppF, ABC-type dipeptide/oligopeptide/nic | 4e-35 | |
| cd03230 | 173 | cd03230, ABC_DR_subfamily_A, ATP-binding cassette | 4e-35 | |
| cd03214 | 180 | cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-bind | 7e-35 | |
| COG1116 | 248 | COG1116, TauB, ABC-type nitrate/sulfonate/bicarbon | 1e-34 | |
| PRK13632 | 271 | PRK13632, cbiO, cobalt transporter ATP-binding sub | 2e-34 | |
| cd00267 | 157 | cd00267, ABC_ATPase, ATP-binding cassette transpor | 8e-34 | |
| PRK13635 | 279 | PRK13635, cbiO, cobalt transporter ATP-binding sub | 9e-34 | |
| cd03262 | 213 | cd03262, ABC_HisP_GlnQ, ATP-binding cassette domai | 1e-33 | |
| cd03294 | 269 | cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette | 1e-33 | |
| COG0444 | 316 | COG0444, DppD, ABC-type dipeptide/oligopeptide/nic | 2e-33 | |
| PRK11153 | 343 | PRK11153, metN, DL-methionine transporter ATP-bind | 2e-33 | |
| cd03299 | 235 | cd03299, ABC_ModC_like, ATP-binding cassette domai | 2e-33 | |
| PLN03232 | 1495 | PLN03232, PLN03232, ABC transporter C family membe | 2e-33 | |
| COG4988 | 559 | COG4988, CydD, ABC-type transport system involved | 3e-33 | |
| PRK14262 | 250 | PRK14262, PRK14262, phosphate ABC transporter ATP- | 9e-33 | |
| TIGR01192 | 585 | TIGR01192, chvA, glucan exporter ATP-binding prote | 1e-32 | |
| cd03252 | 237 | cd03252, ABCC_Hemolysin, ATP-binding cassette doma | 2e-32 | |
| COG5265 | 497 | COG5265, ATM1, ABC-type transport system involved | 2e-32 | |
| PRK10744 | 260 | PRK10744, pstB, phosphate transporter ATP-binding | 3e-32 | |
| cd03245 | 220 | cd03245, ABCC_bacteriocin_exporters, ATP-binding c | 1e-31 | |
| PRK14245 | 250 | PRK14245, PRK14245, phosphate ABC transporter ATP- | 2e-31 | |
| PRK14240 | 250 | PRK14240, PRK14240, phosphate transporter ATP-bind | 3e-31 | |
| PRK14254 | 285 | PRK14254, PRK14254, phosphate ABC transporter ATP- | 3e-31 | |
| COG4608 | 268 | COG4608, AppF, ABC-type oligopeptide transport sys | 3e-31 | |
| TIGR01846 | 694 | TIGR01846, type_I_sec_HlyB, type I secretion syste | 5e-31 | |
| cd03244 | 221 | cd03244, ABCC_MRP_domain2, ATP-binding cassette do | 8e-31 | |
| PRK13647 | 274 | PRK13647, cbiO, cobalt transporter ATP-binding sub | 8e-31 | |
| cd03300 | 232 | cd03300, ABC_PotA_N, ATP-binding cassette domain o | 9e-31 | |
| PRK14236 | 272 | PRK14236, PRK14236, phosphate transporter ATP-bind | 9e-31 | |
| PRK14237 | 267 | PRK14237, PRK14237, phosphate transporter ATP-bind | 1e-30 | |
| TIGR00968 | 237 | TIGR00968, 3a0106s01, sulfate ABC transporter, ATP | 2e-30 | |
| cd03226 | 205 | cd03226, ABC_cobalt_CbiO_domain2, Second domain of | 2e-30 | |
| PRK14235 | 267 | PRK14235, PRK14235, phosphate transporter ATP-bind | 2e-30 | |
| COG4987 | 573 | COG4987, CydC, ABC-type transport system involved | 3e-30 | |
| TIGR01186 | 363 | TIGR01186, proV, glycine betaine/L-proline transpo | 3e-30 | |
| cd03256 | 241 | cd03256, ABC_PhnC_transporter, ATP-binding cassett | 5e-30 | |
| COG3638 | 258 | COG3638, COG3638, ABC-type phosphate/phosphonate t | 5e-30 | |
| COG1118 | 345 | COG1118, CysA, ABC-type sulfate/molybdate transpor | 6e-30 | |
| COG4175 | 386 | COG4175, ProV, ABC-type proline/glycine betaine tr | 1e-29 | |
| PRK14269 | 246 | PRK14269, PRK14269, phosphate ABC transporter ATP- | 1e-29 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 2e-29 | |
| cd03297 | 214 | cd03297, ABC_ModC_molybdenum_transporter, ATP-bind | 2e-29 | |
| COG1121 | 254 | COG1121, ZnuC, ABC-type Mn/Zn transport systems, A | 2e-29 | |
| cd03292 | 214 | cd03292, ABC_FtsE_transporter, ATP-binding cassett | 2e-29 | |
| cd03296 | 239 | cd03296, ABC_CysA_sulfate_importer, ATP-binding ca | 2e-29 | |
| TIGR01187 | 325 | TIGR01187, potA, spermidine/putrescine ABC transpo | 4e-29 | |
| cd03235 | 213 | cd03235, ABC_Metallic_Cations, ATP-binding cassett | 4e-29 | |
| PRK13637 | 287 | PRK13637, cbiO, cobalt transporter ATP-binding sub | 5e-29 | |
| PRK14244 | 251 | PRK14244, PRK14244, phosphate ABC transporter ATP- | 7e-29 | |
| PRK14270 | 251 | PRK14270, PRK14270, phosphate ABC transporter ATP- | 1e-28 | |
| PRK13650 | 279 | PRK13650, cbiO, cobalt transporter ATP-binding sub | 1e-28 | |
| COG3840 | 231 | COG3840, ThiQ, ABC-type thiamine transport system, | 1e-28 | |
| PRK14264 | 305 | PRK14264, PRK14264, phosphate ABC transporter ATP- | 1e-28 | |
| pfam00005 | 119 | pfam00005, ABC_tran, ABC transporter | 1e-28 | |
| TIGR03864 | 236 | TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-bindi | 2e-28 | |
| COG2884 | 223 | COG2884, FtsE, Predicted ATPase involved in cell d | 2e-28 | |
| TIGR02314 | 343 | TIGR02314, ABC_MetN, D-methionine ABC transporter, | 2e-28 | |
| PRK11160 | 574 | PRK11160, PRK11160, cysteine/glutathione ABC trans | 3e-28 | |
| cd03301 | 213 | cd03301, ABC_MalK_N, The N-terminal ATPase domain | 4e-28 | |
| PRK14242 | 253 | PRK14242, PRK14242, phosphate transporter ATP-bind | 5e-28 | |
| cd03264 | 211 | cd03264, ABC_drug_resistance_like, ABC-type multid | 5e-28 | |
| PRK09452 | 375 | PRK09452, potA, putrescine/spermidine ABC transpor | 5e-28 | |
| PRK13640 | 282 | PRK13640, cbiO, cobalt transporter ATP-binding sub | 5e-28 | |
| cd03289 | 275 | cd03289, ABCC_CFTR2, ATP-binding cassette domain 2 | 5e-28 | |
| PRK14253 | 249 | PRK14253, PRK14253, phosphate ABC transporter ATP- | 6e-28 | |
| PRK14266 | 250 | PRK14266, PRK14266, phosphate ABC transporter ATP- | 1e-27 | |
| PRK14261 | 253 | PRK14261, PRK14261, phosphate ABC transporter ATP- | 1e-27 | |
| TIGR02673 | 214 | TIGR02673, FtsE, cell division ATP-binding protein | 2e-27 | |
| PRK14251 | 251 | PRK14251, PRK14251, phosphate ABC transporter ATP- | 4e-27 | |
| TIGR02142 | 354 | TIGR02142, modC_ABC, molybdenum ABC transporter, A | 4e-27 | |
| PRK13644 | 274 | PRK13644, cbiO, cobalt transporter ATP-binding sub | 5e-27 | |
| TIGR03608 | 206 | TIGR03608, L_ocin_972_ABC, putative bacteriocin ex | 5e-27 | |
| TIGR02315 | 243 | TIGR02315, ABC_phnC, phosphonate ABC transporter, | 1e-26 | |
| PRK14259 | 269 | PRK14259, PRK14259, phosphate ABC transporter ATP- | 3e-26 | |
| TIGR01166 | 190 | TIGR01166, cbiO, cobalt transport protein ATP-bind | 4e-26 | |
| COG4555 | 245 | COG4555, NatA, ABC-type Na+ transport system, ATPa | 6e-26 | |
| PRK14247 | 250 | PRK14247, PRK14247, phosphate ABC transporter ATP- | 7e-26 | |
| PRK10070 | 400 | PRK10070, PRK10070, glycine betaine transporter AT | 9e-26 | |
| TIGR03005 | 252 | TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine AB | 1e-25 | |
| PRK13639 | 275 | PRK13639, cbiO, cobalt transporter ATP-binding sub | 1e-25 | |
| COG4598 | 256 | COG4598, HisP, ABC-type histidine transport system | 1e-25 | |
| PTZ00243 | 1560 | PTZ00243, PTZ00243, ABC transporter; Provisional | 1e-25 | |
| PRK14267 | 253 | PRK14267, PRK14267, phosphate ABC transporter ATP- | 1e-25 | |
| PRK14238 | 271 | PRK14238, PRK14238, phosphate transporter ATP-bind | 2e-25 | |
| TIGR01271 | 1490 | TIGR01271, CFTR_protein, cystic fibrosis transmemb | 2e-25 | |
| cd03247 | 178 | cd03247, ABCC_cytochrome_bd, ATP-binding cassette | 3e-25 | |
| PRK13648 | 269 | PRK13648, cbiO, cobalt transporter ATP-binding sub | 3e-25 | |
| TIGR01277 | 213 | TIGR01277, thiQ, thiamine ABC transporter, ATP-bin | 5e-25 | |
| PRK13642 | 277 | PRK13642, cbiO, cobalt transporter ATP-binding sub | 5e-25 | |
| cd03298 | 211 | cd03298, ABC_ThiQ_thiamine_transporter, ATP-bindin | 5e-25 | |
| PRK14275 | 286 | PRK14275, PRK14275, phosphate ABC transporter ATP- | 6e-25 | |
| TIGR02770 | 230 | TIGR02770, nickel_nikD, nickel import ATP-binding | 6e-25 | |
| TIGR02982 | 220 | TIGR02982, heterocyst_DevA, ABC exporter ATP-bindi | 6e-25 | |
| PRK11264 | 250 | PRK11264, PRK11264, putative amino-acid ABC transp | 6e-25 | |
| PRK14252 | 265 | PRK14252, PRK14252, phosphate ABC transporter ATP- | 8e-25 | |
| COG4525 | 259 | COG4525, TauB, ABC-type taurine transport system, | 9e-25 | |
| PRK14273 | 254 | PRK14273, PRK14273, phosphate ABC transporter ATP- | 9e-25 | |
| TIGR00957 | 1522 | TIGR00957, MRP_assoc_pro, multi drug resistance-as | 1e-24 | |
| PRK11607 | 377 | PRK11607, potG, putrescine transporter ATP-binding | 1e-24 | |
| PRK14246 | 257 | PRK14246, PRK14246, phosphate ABC transporter ATP- | 1e-24 | |
| PRK13646 | 286 | PRK13646, cbiO, cobalt transporter ATP-binding sub | 1e-24 | |
| TIGR03797 | 686 | TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin syste | 2e-24 | |
| PRK11308 | 327 | PRK11308, dppF, dipeptide transporter ATP-binding | 2e-24 | |
| PRK14249 | 251 | PRK14249, PRK14249, phosphate ABC transporter ATP- | 2e-24 | |
| PRK09493 | 240 | PRK09493, glnQ, glutamine ABC transporter ATP-bind | 3e-24 | |
| PRK13634 | 290 | PRK13634, cbiO, cobalt transporter ATP-binding sub | 3e-24 | |
| COG1129 | 500 | COG1129, MglA, ABC-type sugar transport system, AT | 3e-24 | |
| PRK14272 | 252 | PRK14272, PRK14272, phosphate ABC transporter ATP- | 3e-24 | |
| PRK13649 | 280 | PRK13649, cbiO, cobalt transporter ATP-binding sub | 3e-24 | |
| TIGR03258 | 362 | TIGR03258, PhnT, 2-aminoethylphosphonate ABC trans | 3e-24 | |
| PRK14241 | 258 | PRK14241, PRK14241, phosphate transporter ATP-bind | 4e-24 | |
| cd03291 | 282 | cd03291, ABCC_CFTR1, ATP-binding cassette domain o | 4e-24 | |
| PRK14255 | 252 | PRK14255, PRK14255, phosphate ABC transporter ATP- | 5e-24 | |
| PRK14239 | 252 | PRK14239, PRK14239, phosphate transporter ATP-bind | 6e-24 | |
| PRK14257 | 329 | PRK14257, PRK14257, phosphate ABC transporter ATP- | 7e-24 | |
| COG4148 | 352 | COG4148, ModC, ABC-type molybdate transport system | 9e-24 | |
| TIGR02868 | 530 | TIGR02868, CydC, thiol reductant ABC exporter, Cyd | 1e-23 | |
| PLN03130 | 1622 | PLN03130, PLN03130, ABC transporter C family membe | 1e-23 | |
| PRK13652 | 277 | PRK13652, cbiO, cobalt transporter ATP-binding sub | 1e-23 | |
| PRK10789 | 569 | PRK10789, PRK10789, putative multidrug transporter | 2e-23 | |
| COG0411 | 250 | COG0411, LivG, ABC-type branched-chain amino acid | 2e-23 | |
| PRK14243 | 264 | PRK14243, PRK14243, phosphate transporter ATP-bind | 2e-23 | |
| cd03219 | 236 | cd03219, ABC_Mj1267_LivG_branched, ATP-binding cas | 2e-23 | |
| PRK11432 | 351 | PRK11432, fbpC, ferric transporter ATP-binding sub | 3e-23 | |
| COG4172 | 534 | COG4172, COG4172, ABC-type uncharacterized transpo | 3e-23 | |
| PRK14256 | 252 | PRK14256, PRK14256, phosphate ABC transporter ATP- | 4e-23 | |
| cd03290 | 218 | cd03290, ABCC_SUR1_N, ATP-binding cassette domain | 4e-23 | |
| COG4161 | 242 | COG4161, ArtP, ABC-type arginine transport system, | 6e-23 | |
| cd03216 | 163 | cd03216, ABC_Carb_Monos_I, First domain of the ATP | 7e-23 | |
| PRK14274 | 259 | PRK14274, PRK14274, phosphate ABC transporter ATP- | 8e-23 | |
| TIGR03265 | 353 | TIGR03265, PhnT2, putative 2-aminoethylphosphonate | 9e-23 | |
| PRK14268 | 258 | PRK14268, PRK14268, phosphate ABC transporter ATP- | 9e-23 | |
| cd03260 | 227 | cd03260, ABC_PstB_phosphate_transporter, ATP-bindi | 1e-22 | |
| COG4172 | 534 | COG4172, COG4172, ABC-type uncharacterized transpo | 1e-22 | |
| PRK14248 | 268 | PRK14248, PRK14248, phosphate ABC transporter ATP- | 1e-22 | |
| PRK10619 | 257 | PRK10619, PRK10619, histidine/lysine/arginine/orni | 1e-22 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 1e-22 | |
| PRK13636 | 283 | PRK13636, cbiO, cobalt transporter ATP-binding sub | 2e-22 | |
| cd03263 | 220 | cd03263, ABC_subfamily_A, ATP-binding cassette dom | 2e-22 | |
| PRK14258 | 261 | PRK14258, PRK14258, phosphate ABC transporter ATP- | 2e-22 | |
| cd03266 | 218 | cd03266, ABC_NatA_sodium_exporter, ATP-binding cas | 2e-22 | |
| PRK11124 | 242 | PRK11124, artP, arginine transporter ATP-binding s | 2e-22 | |
| cd03225 | 211 | cd03225, ABC_cobalt_CbiO_domain1, First domain of | 3e-22 | |
| cd03224 | 222 | cd03224, ABC_TM1139_LivF_branched, ATP-binding cas | 3e-22 | |
| TIGR01271 | 1490 | TIGR01271, CFTR_protein, cystic fibrosis transmemb | 4e-22 | |
| COG3845 | 501 | COG3845, COG3845, ABC-type uncharacterized transpo | 4e-22 | |
| PRK10247 | 225 | PRK10247, PRK10247, putative ABC transporter ATP-b | 5e-22 | |
| PRK14260 | 259 | PRK14260, PRK14260, phosphate ABC transporter ATP- | 7e-22 | |
| PRK10851 | 353 | PRK10851, PRK10851, sulfate/thiosulfate transporte | 7e-22 | |
| cd03229 | 178 | cd03229, ABC_Class3, ATP-binding cassette domain o | 8e-22 | |
| PRK11231 | 255 | PRK11231, fecE, iron-dicitrate transporter ATP-bin | 9e-22 | |
| COG4619 | 223 | COG4619, COG4619, ABC-type uncharacterized transpo | 1e-21 | |
| cd03213 | 194 | cd03213, ABCG_EPDR, Eye pigment and drug resistanc | 1e-21 | |
| PTZ00243 | 1560 | PTZ00243, PTZ00243, ABC transporter; Provisional | 2e-21 | |
| PRK13645 | 289 | PRK13645, cbiO, cobalt transporter ATP-binding sub | 2e-21 | |
| PRK13641 | 287 | PRK13641, cbiO, cobalt transporter ATP-binding sub | 2e-21 | |
| TIGR02769 | 265 | TIGR02769, nickel_nikE, nickel import ATP-binding | 2e-21 | |
| PRK13548 | 258 | PRK13548, hmuV, hemin importer ATP-binding subunit | 3e-21 | |
| PRK14265 | 274 | PRK14265, PRK14265, phosphate ABC transporter ATP- | 7e-21 | |
| PRK10419 | 268 | PRK10419, nikE, nickel transporter ATP-binding pro | 8e-21 | |
| TIGR01193 | 708 | TIGR01193, bacteriocin_ABC, ABC-type bacteriocin t | 2e-20 | |
| PRK14263 | 261 | PRK14263, PRK14263, phosphate ABC transporter ATP- | 2e-20 | |
| TIGR02324 | 224 | TIGR02324, CP_lyasePhnL, phosphonate C-P lyase sys | 2e-20 | |
| COG1101 | 263 | COG1101, PhnK, ABC-type uncharacterized transport | 2e-20 | |
| COG4604 | 252 | COG4604, CeuD, ABC-type enterochelin transport sys | 2e-20 | |
| PRK10790 | 592 | PRK10790, PRK10790, putative multidrug transporter | 3e-20 | |
| TIGR02211 | 221 | TIGR02211, LolD_lipo_ex, lipoprotein releasing sys | 5e-20 | |
| PRK11144 | 352 | PRK11144, modC, molybdate transporter ATP-binding | 5e-20 | |
| cd03369 | 207 | cd03369, ABCC_NFT1, ATP-binding cassette domain 2 | 6e-20 | |
| PLN03232 | 1495 | PLN03232, PLN03232, ABC transporter C family membe | 6e-20 | |
| PRK15134 | 529 | PRK15134, PRK15134, microcin C ABC transporter ATP | 6e-20 | |
| cd03261 | 235 | cd03261, ABC_Org_Solvent_Resistant, ATP-binding ca | 7e-20 | |
| PRK11831 | 269 | PRK11831, PRK11831, putative ABC transporter ATP-b | 7e-20 | |
| COG1119 | 257 | COG1119, ModF, ABC-type molybdenum transport syste | 8e-20 | |
| TIGR03873 | 256 | TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC tra | 1e-19 | |
| COG4559 | 259 | COG4559, COG4559, ABC-type hemin transport system, | 1e-19 | |
| COG4167 | 267 | COG4167, SapF, ABC-type antimicrobial peptide tran | 2e-19 | |
| PRK13633 | 280 | PRK13633, PRK13633, cobalt transporter ATP-binding | 2e-19 | |
| TIGR02323 | 253 | TIGR02323, CP_lyasePhnK, phosphonate C-P lyase sys | 2e-19 | |
| cd00267 | 157 | cd00267, ABC_ATPase, ATP-binding cassette transpor | 3e-19 | |
| cd03268 | 208 | cd03268, ABC_BcrA_bacitracin_resist, ATP-binding c | 3e-19 | |
| PRK11174 | 588 | PRK11174, PRK11174, cysteine/glutathione ABC trans | 4e-19 | |
| PRK10261 | 623 | PRK10261, PRK10261, glutathione transporter ATP-bi | 4e-19 | |
| COG1137 | 243 | COG1137, YhbG, ABC-type (unclassified) transport s | 5e-19 | |
| cd03269 | 210 | cd03269, ABC_putative_ATPase, ATP-binding cassette | 6e-19 | |
| cd03293 | 220 | cd03293, ABC_NrtD_SsuB_transporters, ATP-binding c | 7e-19 | |
| PRK14271 | 276 | PRK14271, PRK14271, phosphate ABC transporter ATP- | 7e-19 | |
| cd03246 | 173 | cd03246, ABCC_Protease_Secretion, ATP-binding cass | 9e-19 | |
| PRK11248 | 255 | PRK11248, tauB, taurine transporter ATP-binding su | 9e-19 | |
| COG1120 | 258 | COG1120, FepC, ABC-type cobalamin/Fe3+-siderophore | 1e-18 | |
| PRK11247 | 257 | PRK11247, ssuB, aliphatic sulfonates transport ATP | 1e-18 | |
| PRK10771 | 232 | PRK10771, thiQ, thiamine transporter ATP-binding s | 1e-18 | |
| COG0396 | 251 | COG0396, sufC, Cysteine desulfurase activator ATPa | 1e-18 | |
| PRK13643 | 288 | PRK13643, cbiO, cobalt transporter ATP-binding sub | 1e-18 | |
| COG4181 | 228 | COG4181, COG4181, Predicted ABC-type transport sys | 2e-18 | |
| TIGR03740 | 223 | TIGR03740, galliderm_ABC, gallidermin-class lantib | 2e-18 | |
| cd03230 | 173 | cd03230, ABC_DR_subfamily_A, ATP-binding cassette | 3e-18 | |
| PRK13536 | 340 | PRK13536, PRK13536, nodulation factor exporter sub | 3e-18 | |
| COG0410 | 237 | COG0410, LivF, ABC-type branched-chain amino acid | 3e-18 | |
| cd03218 | 232 | cd03218, ABC_YhbG, ATP-binding cassette component | 3e-18 | |
| PRK11701 | 258 | PRK11701, phnK, phosphonate C-P lyase system prote | 3e-18 | |
| cd03257 | 228 | cd03257, ABC_NikE_OppD_transporters, ATP-binding c | 4e-18 | |
| COG4136 | 213 | COG4136, COG4136, ABC-type uncharacterized transpo | 4e-18 | |
| TIGR03796 | 710 | TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin syste | 5e-18 | |
| TIGR01184 | 230 | TIGR01184, ntrCD, nitrate transport ATP-binding su | 5e-18 | |
| PRK13631 | 320 | PRK13631, cbiO, cobalt transporter ATP-binding sub | 5e-18 | |
| COG4178 | 604 | COG4178, COG4178, ABC-type uncharacterized transpo | 5e-18 | |
| PRK10908 | 222 | PRK10908, PRK10908, cell division protein FtsE; Pr | 7e-18 | |
| PRK14250 | 241 | PRK14250, PRK14250, phosphate ABC transporter ATP- | 8e-18 | |
| cd03214 | 180 | cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-bind | 1e-17 | |
| cd03265 | 220 | cd03265, ABC_DrrA, Daunorubicin/doxorubicin resist | 2e-17 | |
| PRK10535 | 648 | PRK10535, PRK10535, macrolide transporter ATP-bind | 4e-17 | |
| PRK13638 | 271 | PRK13638, cbiO, cobalt transporter ATP-binding sub | 6e-17 | |
| COG1135 | 339 | COG1135, AbcC, ABC-type metal ion transport system | 7e-17 | |
| COG1125 | 309 | COG1125, OpuBA, ABC-type proline/glycine betaine t | 7e-17 | |
| COG4107 | 258 | COG4107, PhnK, ABC-type phosphonate transport syst | 7e-17 | |
| PRK10261 | 623 | PRK10261, PRK10261, glutathione transporter ATP-bi | 8e-17 | |
| PRK15134 | 529 | PRK15134, PRK15134, microcin C ABC transporter ATP | 1e-16 | |
| PRK10575 | 265 | PRK10575, PRK10575, iron-hydroxamate transporter A | 1e-16 | |
| cd03256 | 241 | cd03256, ABC_PhnC_transporter, ATP-binding cassett | 2e-16 | |
| cd03231 | 201 | cd03231, ABC_CcmA_heme_exporter, Cytochrome c biog | 2e-16 | |
| cd03217 | 200 | cd03217, ABC_FeS_Assembly, ABC-type transport syst | 2e-16 | |
| PRK15079 | 331 | PRK15079, PRK15079, oligopeptide ABC transporter A | 2e-16 | |
| cd03295 | 242 | cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cas | 3e-16 | |
| COG1127 | 263 | COG1127, Ttg2A, ABC-type transport system involved | 3e-16 | |
| TIGR00957 | 1522 | TIGR00957, MRP_assoc_pro, multi drug resistance-as | 3e-16 | |
| PRK09536 | 402 | PRK09536, btuD, corrinoid ABC transporter ATPase; | 3e-16 | |
| COG4674 | 249 | COG4674, COG4674, Uncharacterized ABC-type transpo | 3e-16 | |
| cd03259 | 213 | cd03259, ABC_Carb_Solutes_like, ATP-binding casset | 4e-16 | |
| TIGR03415 | 382 | TIGR03415, ABC_choXWV_ATP, choline ABC transporter | 4e-16 | |
| PRK13632 | 271 | PRK13632, cbiO, cobalt transporter ATP-binding sub | 5e-16 | |
| cd03262 | 213 | cd03262, ABC_HisP_GlnQ, ATP-binding cassette domai | 5e-16 | |
| PRK11000 | 369 | PRK11000, PRK11000, maltose/maltodextrin transport | 5e-16 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 6e-16 | |
| PRK10253 | 265 | PRK10253, PRK10253, iron-enterobactin transporter | 6e-16 | |
| COG1122 | 235 | COG1122, CbiO, ABC-type cobalt transport system, A | 7e-16 | |
| COG3842 | 352 | COG3842, PotA, ABC-type spermidine/putrescine tran | 1e-15 | |
| COG3638 | 258 | COG3638, COG3638, ABC-type phosphate/phosphonate t | 1e-15 | |
| TIGR01288 | 303 | TIGR01288, nodI, ATP-binding ABC transporter famil | 1e-15 | |
| TIGR03269 | 520 | TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc | 1e-15 | |
| COG1131 | 293 | COG1131, CcmA, ABC-type multidrug transport system | 2e-15 | |
| PRK11650 | 356 | PRK11650, ugpC, glycerol-3-phosphate transporter A | 2e-15 | |
| PRK13651 | 305 | PRK13651, PRK13651, cobalt transporter ATP-binding | 2e-15 | |
| PRK03695 | 248 | PRK03695, PRK03695, vitamin B12-transporter ATPase | 3e-15 | |
| COG1126 | 240 | COG1126, GlnQ, ABC-type polar amino acid transport | 4e-15 | |
| TIGR02673 | 214 | TIGR02673, FtsE, cell division ATP-binding protein | 4e-15 | |
| cd03223 | 166 | cd03223, ABCD_peroxisomal_ALDP, ATP-binding casset | 4e-15 | |
| COG1116 | 248 | COG1116, TauB, ABC-type nitrate/sulfonate/bicarbon | 5e-15 | |
| PRK10418 | 254 | PRK10418, nikD, nickel transporter ATP-binding pro | 5e-15 | |
| PRK15439 | 510 | PRK15439, PRK15439, autoinducer 2 ABC transporter | 5e-15 | |
| PRK13537 | 306 | PRK13537, PRK13537, nodulation ABC transporter Nod | 5e-15 | |
| TIGR03410 | 230 | TIGR03410, urea_trans_UrtE, urea ABC transporter, | 6e-15 | |
| cd03258 | 233 | cd03258, ABC_MetN_methionine_transporter, ATP-bind | 7e-15 | |
| COG4778 | 235 | COG4778, PhnL, ABC-type phosphonate transport syst | 7e-15 | |
| COG2884 | 223 | COG2884, FtsE, Predicted ATPase involved in cell d | 8e-15 | |
| cd03234 | 226 | cd03234, ABCG_White, White pigment protein homolog | 8e-15 | |
| TIGR01188 | 302 | TIGR01188, drrA, daunorubicin resistance ABC trans | 8e-15 | |
| COG1117 | 253 | COG1117, PstB, ABC-type phosphate transport system | 1e-14 | |
| TIGR02315 | 243 | TIGR02315, ABC_phnC, phosphonate ABC transporter, | 1e-14 | |
| TIGR03411 | 242 | TIGR03411, urea_trans_UrtD, urea ABC transporter, | 2e-14 | |
| TIGR00955 | 617 | TIGR00955, 3a01204, The Eye Pigment Precursor Tran | 2e-14 | |
| COG1136 | 226 | COG1136, SalX, ABC-type antimicrobial peptide tran | 3e-14 | |
| cd03220 | 224 | cd03220, ABC_KpsT_Wzt, ATP-binding cassette compon | 3e-14 | |
| TIGR00972 | 247 | TIGR00972, 3a0107s01c2, phosphate ABC transporter, | 4e-14 | |
| COG1118 | 345 | COG1118, CysA, ABC-type sulfate/molybdate transpor | 4e-14 | |
| COG4138 | 248 | COG4138, BtuD, ABC-type cobalamin transport system | 4e-14 | |
| COG1124 | 252 | COG1124, DppF, ABC-type dipeptide/oligopeptide/nic | 5e-14 | |
| TIGR01194 | 555 | TIGR01194, cyc_pep_trnsptr, cyclic peptide transpo | 5e-14 | |
| cd03215 | 182 | cd03215, ABC_Carb_Monos_II, Second domain of the A | 5e-14 | |
| cd03237 | 246 | cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-bin | 6e-14 | |
| COG4133 | 209 | COG4133, CcmA, ABC-type transport system involved | 8e-14 | |
| PRK15112 | 267 | PRK15112, PRK15112, antimicrobial peptide ABC syst | 9e-14 | |
| PRK11629 | 233 | PRK11629, lolD, lipoprotein transporter ATP-bindin | 9e-14 | |
| COG3839 | 338 | COG3839, MalK, ABC-type sugar transport systems, A | 1e-13 | |
| TIGR01189 | 198 | TIGR01189, ccmA, heme ABC exporter, ATP-binding pr | 1e-13 | |
| COG4586 | 325 | COG4586, COG4586, ABC-type uncharacterized transpo | 1e-13 | |
| PLN03130 | 1622 | PLN03130, PLN03130, ABC transporter C family membe | 2e-13 | |
| PRK13637 | 287 | PRK13637, cbiO, cobalt transporter ATP-binding sub | 2e-13 | |
| COG4615 | 546 | COG4615, PvdE, ABC-type siderophore export system, | 2e-13 | |
| TIGR01257 | 2272 | TIGR01257, rim_protein, retinal-specific rim ABC t | 2e-13 | |
| COG1134 | 249 | COG1134, TagH, ABC-type polysaccharide/polyol phos | 2e-13 | |
| cd03255 | 218 | cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding casse | 3e-13 | |
| PRK10584 | 228 | PRK10584, PRK10584, putative ABC transporter ATP-b | 3e-13 | |
| cd03288 | 257 | cd03288, ABCC_SUR2, ATP-binding cassette domain 2 | 4e-13 | |
| TIGR00968 | 237 | TIGR00968, 3a0106s01, sulfate ABC transporter, ATP | 4e-13 | |
| PRK13549 | 506 | PRK13549, PRK13549, xylose transporter ATP-binding | 4e-13 | |
| TIGR01978 | 243 | TIGR01978, sufC, FeS assembly ATPase SufC | 4e-13 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 6e-13 | |
| TIGR01842 | 544 | TIGR01842, type_I_sec_PrtD, type I secretion syste | 7e-13 | |
| TIGR03864 | 236 | TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-bindi | 7e-13 | |
| cd03250 | 204 | cd03250, ABCC_MRP_domain1, ATP-binding cassette do | 8e-13 | |
| cd03292 | 214 | cd03292, ABC_FtsE_transporter, ATP-binding cassett | 8e-13 | |
| TIGR03522 | 301 | TIGR03522, GldA_ABC_ATP, gliding motility-associat | 8e-13 | |
| TIGR03608 | 206 | TIGR03608, L_ocin_972_ABC, putative bacteriocin ex | 1e-12 | |
| COG4618 | 580 | COG4618, ArpD, ABC-type protease/lipase transport | 2e-12 | |
| PRK14240 | 250 | PRK14240, PRK14240, phosphate transporter ATP-bind | 2e-12 | |
| cd03300 | 232 | cd03300, ABC_PotA_N, ATP-binding cassette domain o | 2e-12 | |
| COG1129 | 500 | COG1129, MglA, ABC-type sugar transport system, AT | 2e-12 | |
| TIGR03719 | 552 | TIGR03719, ABC_ABC_ChvD, ATP-binding cassette prot | 2e-12 | |
| PRK11022 | 326 | PRK11022, dppD, dipeptide transporter ATP-binding | 2e-12 | |
| PRK10744 | 260 | PRK10744, pstB, phosphate transporter ATP-binding | 3e-12 | |
| cd03226 | 205 | cd03226, ABC_cobalt_CbiO_domain2, Second domain of | 4e-12 | |
| cd03296 | 239 | cd03296, ABC_CysA_sulfate_importer, ATP-binding ca | 4e-12 | |
| cd03267 | 236 | cd03267, ABC_NatA_like, ATP-binding cassette domai | 4e-12 | |
| cd03294 | 269 | cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette | 5e-12 | |
| PRK13647 | 274 | PRK13647, cbiO, cobalt transporter ATP-binding sub | 5e-12 | |
| COG4525 | 259 | COG4525, TauB, ABC-type taurine transport system, | 5e-12 | |
| PRK09473 | 330 | PRK09473, oppD, oligopeptide transporter ATP-bindi | 5e-12 | |
| TIGR03269 | 520 | TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc | 6e-12 | |
| PRK13539 | 207 | PRK13539, PRK13539, cytochrome c biogenesis protei | 6e-12 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 7e-12 | |
| COG4608 | 268 | COG4608, AppF, ABC-type oligopeptide transport sys | 7e-12 | |
| PRK10895 | 241 | PRK10895, PRK10895, lipopolysaccharide ABC transpo | 8e-12 | |
| PRK10522 | 547 | PRK10522, PRK10522, multidrug transporter membrane | 8e-12 | |
| TIGR01166 | 190 | TIGR01166, cbiO, cobalt transport protein ATP-bind | 1e-11 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 1e-11 | |
| cd03221 | 144 | cd03221, ABCF_EF-3, ATP-binding cassette domain of | 1e-11 | |
| PTZ00265 | 1466 | PTZ00265, PTZ00265, multidrug resistance protein ( | 3e-11 | |
| cd03216 | 163 | cd03216, ABC_Carb_Monos_I, First domain of the ATP | 3e-11 | |
| PRK11288 | 501 | PRK11288, araG, L-arabinose transporter ATP-bindin | 3e-11 | |
| COG4152 | 300 | COG4152, COG4152, ABC-type uncharacterized transpo | 3e-11 | |
| PRK13635 | 279 | PRK13635, cbiO, cobalt transporter ATP-binding sub | 4e-11 | |
| COG4555 | 245 | COG4555, NatA, ABC-type Na+ transport system, ATPa | 4e-11 | |
| COG1129 | 500 | COG1129, MglA, ABC-type sugar transport system, AT | 4e-11 | |
| COG4619 | 223 | COG4619, COG4619, ABC-type uncharacterized transpo | 4e-11 | |
| TIGR03771 | 223 | TIGR03771, anch_rpt_ABC, anchored repeat-type ABC | 4e-11 | |
| PRK14266 | 250 | PRK14266, PRK14266, phosphate ABC transporter ATP- | 5e-11 | |
| PRK13649 | 280 | PRK13649, cbiO, cobalt transporter ATP-binding sub | 5e-11 | |
| CHL00131 | 252 | CHL00131, ycf16, sulfate ABC transporter protein; | 6e-11 | |
| COG0444 | 316 | COG0444, DppD, ABC-type dipeptide/oligopeptide/nic | 8e-11 | |
| COG4175 | 386 | COG4175, ProV, ABC-type proline/glycine betaine tr | 8e-11 | |
| PRK15093 | 330 | PRK15093, PRK15093, antimicrobial peptide ABC tran | 8e-11 | |
| PRK14235 | 267 | PRK14235, PRK14235, phosphate transporter ATP-bind | 9e-11 | |
| PRK13547 | 272 | PRK13547, hmuV, hemin importer ATP-binding subunit | 9e-11 | |
| PRK14245 | 250 | PRK14245, PRK14245, phosphate ABC transporter ATP- | 1e-10 | |
| COG1121 | 254 | COG1121, ZnuC, ABC-type Mn/Zn transport systems, A | 1e-10 | |
| PRK13640 | 282 | PRK13640, cbiO, cobalt transporter ATP-binding sub | 1e-10 | |
| PTZ00243 | 1560 | PTZ00243, PTZ00243, ABC transporter; Provisional | 1e-10 | |
| PRK10247 | 225 | PRK10247, PRK10247, putative ABC transporter ATP-b | 1e-10 | |
| COG1119 | 257 | COG1119, ModF, ABC-type molybdenum transport syste | 1e-10 | |
| COG1245 | 591 | COG1245, COG1245, Predicted ATPase, RNase L inhibi | 1e-10 | |
| PLN03232 | 1495 | PLN03232, PLN03232, ABC transporter C family membe | 2e-10 | |
| PRK09493 | 240 | PRK09493, glnQ, glutamine ABC transporter ATP-bind | 2e-10 | |
| PRK09984 | 262 | PRK09984, PRK09984, phosphonate/organophosphate es | 2e-10 | |
| PRK11819 | 556 | PRK11819, PRK11819, putative ABC transporter ATP-b | 2e-10 | |
| PRK09580 | 248 | PRK09580, sufC, cysteine desulfurase ATPase compon | 2e-10 | |
| PRK14236 | 272 | PRK14236, PRK14236, phosphate transporter ATP-bind | 3e-10 | |
| pfam00005 | 119 | pfam00005, ABC_tran, ABC transporter | 3e-10 | |
| PRK13634 | 290 | PRK13634, cbiO, cobalt transporter ATP-binding sub | 3e-10 | |
| PRK10938 | 490 | PRK10938, PRK10938, putative molybdenum transport | 3e-10 | |
| PRK11153 | 343 | PRK11153, metN, DL-methionine transporter ATP-bind | 4e-10 | |
| cd03289 | 275 | cd03289, ABCC_CFTR2, ATP-binding cassette domain 2 | 4e-10 | |
| COG3845 | 501 | COG3845, COG3845, ABC-type uncharacterized transpo | 4e-10 | |
| PRK13538 | 204 | PRK13538, PRK13538, cytochrome c biogenesis protei | 4e-10 | |
| cd03299 | 235 | cd03299, ABC_ModC_like, ATP-binding cassette domai | 5e-10 | |
| PRK13639 | 275 | PRK13639, cbiO, cobalt transporter ATP-binding sub | 5e-10 | |
| TIGR02633 | 500 | TIGR02633, xylG, D-xylose ABC transporter, ATP-bin | 5e-10 | |
| PRK15056 | 272 | PRK15056, PRK15056, manganese/iron transporter ATP | 5e-10 | |
| PRK09544 | 251 | PRK09544, znuC, high-affinity zinc transporter ATP | 5e-10 | |
| COG4170 | 330 | COG4170, SapD, ABC-type antimicrobial peptide tran | 5e-10 | |
| PRK11300 | 255 | PRK11300, livG, leucine/isoleucine/valine transpor | 5e-10 | |
| PRK14242 | 253 | PRK14242, PRK14242, phosphate transporter ATP-bind | 6e-10 | |
| PRK11614 | 237 | PRK11614, livF, leucine/isoleucine/valine transpor | 6e-10 | |
| cd03263 | 220 | cd03263, ABC_subfamily_A, ATP-binding cassette dom | 7e-10 | |
| PRK13641 | 287 | PRK13641, cbiO, cobalt transporter ATP-binding sub | 7e-10 | |
| cd03235 | 213 | cd03235, ABC_Metallic_Cations, ATP-binding cassett | 8e-10 | |
| PRK13650 | 279 | PRK13650, cbiO, cobalt transporter ATP-binding sub | 8e-10 | |
| COG3845 | 501 | COG3845, COG3845, ABC-type uncharacterized transpo | 8e-10 | |
| TIGR02211 | 221 | TIGR02211, LolD_lipo_ex, lipoprotein releasing sys | 8e-10 | |
| PRK14264 | 305 | PRK14264, PRK14264, phosphate ABC transporter ATP- | 1e-09 | |
| cd03301 | 213 | cd03301, ABC_MalK_N, The N-terminal ATPase domain | 2e-09 | |
| PRK09452 | 375 | PRK09452, potA, putrescine/spermidine ABC transpor | 2e-09 | |
| COG0411 | 250 | COG0411, LivG, ABC-type branched-chain amino acid | 2e-09 | |
| TIGR03265 | 353 | TIGR03265, PhnT2, putative 2-aminoethylphosphonate | 2e-09 | |
| COG4181 | 228 | COG4181, COG4181, Predicted ABC-type transport sys | 2e-09 | |
| cd03220 | 224 | cd03220, ABC_KpsT_Wzt, ATP-binding cassette compon | 2e-09 | |
| PRK13409 | 590 | PRK13409, PRK13409, putative ATPase RIL; Provision | 2e-09 | |
| TIGR01186 | 363 | TIGR01186, proV, glycine betaine/L-proline transpo | 3e-09 | |
| PRK14269 | 246 | PRK14269, PRK14269, phosphate ABC transporter ATP- | 3e-09 | |
| COG4172 | 534 | COG4172, COG4172, ABC-type uncharacterized transpo | 3e-09 | |
| PRK10419 | 268 | PRK10419, nikE, nickel transporter ATP-binding pro | 3e-09 | |
| smart00382 | 148 | smart00382, AAA, ATPases associated with a variety | 3e-09 | |
| cd03264 | 211 | cd03264, ABC_drug_resistance_like, ABC-type multid | 4e-09 | |
| PRK11831 | 269 | PRK11831, PRK11831, putative ABC transporter ATP-b | 4e-09 | |
| PLN03211 | 659 | PLN03211, PLN03211, ABC transporter G-25; Provisio | 4e-09 | |
| COG4604 | 252 | COG4604, CeuD, ABC-type enterochelin transport sys | 5e-09 | |
| PRK15439 | 510 | PRK15439, PRK15439, autoinducer 2 ABC transporter | 6e-09 | |
| COG4172 | 534 | COG4172, COG4172, ABC-type uncharacterized transpo | 7e-09 | |
| COG1137 | 243 | COG1137, YhbG, ABC-type (unclassified) transport s | 7e-09 | |
| PRK13409 | 590 | PRK13409, PRK13409, putative ATPase RIL; Provision | 7e-09 | |
| PRK11264 | 250 | PRK11264, PRK11264, putative amino-acid ABC transp | 8e-09 | |
| COG2401 | 593 | COG2401, COG2401, ABC-type ATPase fused to a predi | 8e-09 | |
| PRK14270 | 251 | PRK14270, PRK14270, phosphate ABC transporter ATP- | 9e-09 | |
| PRK10762 | 501 | PRK10762, PRK10762, D-ribose transporter ATP bindi | 9e-09 | |
| PRK14244 | 251 | PRK14244, PRK14244, phosphate ABC transporter ATP- | 1e-08 | |
| COG3840 | 231 | COG3840, ThiQ, ABC-type thiamine transport system, | 1e-08 | |
| TIGR01271 | 1490 | TIGR01271, CFTR_protein, cystic fibrosis transmemb | 1e-08 | |
| PRK13646 | 286 | PRK13646, cbiO, cobalt transporter ATP-binding sub | 1e-08 | |
| PRK11248 | 255 | PRK11248, tauB, taurine transporter ATP-binding su | 1e-08 | |
| cd03232 | 192 | cd03232, ABCG_PDR_domain2, Second domain of the pl | 1e-08 | |
| PRK10636 | 638 | PRK10636, PRK10636, putative ABC transporter ATP-b | 1e-08 | |
| PRK14253 | 249 | PRK14253, PRK14253, phosphate ABC transporter ATP- | 2e-08 | |
| COG4615 | 546 | COG4615, PvdE, ABC-type siderophore export system, | 2e-08 | |
| TIGR00954 | 659 | TIGR00954, 3a01203, Peroxysomal Fatty Acyl CoA Tra | 2e-08 | |
| PRK13540 | 200 | PRK13540, PRK13540, cytochrome c biogenesis protei | 2e-08 | |
| cd03297 | 214 | cd03297, ABC_ModC_molybdenum_transporter, ATP-bind | 3e-08 | |
| PRK13648 | 269 | PRK13648, cbiO, cobalt transporter ATP-binding sub | 3e-08 | |
| PRK13636 | 283 | PRK13636, cbiO, cobalt transporter ATP-binding sub | 3e-08 | |
| PRK11231 | 255 | PRK11231, fecE, iron-dicitrate transporter ATP-bin | 3e-08 | |
| PRK13548 | 258 | PRK13548, hmuV, hemin importer ATP-binding subunit | 3e-08 | |
| cd03221 | 144 | cd03221, ABCF_EF-3, ATP-binding cassette domain of | 3e-08 | |
| TIGR02633 | 500 | TIGR02633, xylG, D-xylose ABC transporter, ATP-bin | 3e-08 | |
| TIGR01277 | 213 | TIGR01277, thiQ, thiamine ABC transporter, ATP-bin | 4e-08 | |
| cd03219 | 236 | cd03219, ABC_Mj1267_LivG_branched, ATP-binding cas | 4e-08 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 4e-08 | |
| cd03298 | 211 | cd03298, ABC_ThiQ_thiamine_transporter, ATP-bindin | 5e-08 | |
| COG1245 | 591 | COG1245, COG1245, Predicted ATPase, RNase L inhibi | 5e-08 | |
| PRK09700 | 510 | PRK09700, PRK09700, D-allose transporter ATP-bindi | 5e-08 | |
| TIGR02142 | 354 | TIGR02142, modC_ABC, molybdenum ABC transporter, A | 6e-08 | |
| PRK13642 | 277 | PRK13642, cbiO, cobalt transporter ATP-binding sub | 6e-08 | |
| PRK10253 | 265 | PRK10253, PRK10253, iron-enterobactin transporter | 6e-08 | |
| PRK13645 | 289 | PRK13645, cbiO, cobalt transporter ATP-binding sub | 7e-08 | |
| PRK10575 | 265 | PRK10575, PRK10575, iron-hydroxamate transporter A | 8e-08 | |
| TIGR01194 | 555 | TIGR01194, cyc_pep_trnsptr, cyclic peptide transpo | 8e-08 | |
| PRK09700 | 510 | PRK09700, PRK09700, D-allose transporter ATP-bindi | 8e-08 | |
| PLN03073 | 718 | PLN03073, PLN03073, ABC transporter F family; Prov | 9e-08 | |
| cd03236 | 255 | cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-bin | 9e-08 | |
| PRK14247 | 250 | PRK14247, PRK14247, phosphate ABC transporter ATP- | 1e-07 | |
| cd03224 | 222 | cd03224, ABC_TM1139_LivF_branched, ATP-binding cas | 1e-07 | |
| PRK10851 | 353 | PRK10851, PRK10851, sulfate/thiosulfate transporte | 1e-07 | |
| TIGR02769 | 265 | TIGR02769, nickel_nikE, nickel import ATP-binding | 1e-07 | |
| TIGR02324 | 224 | TIGR02324, CP_lyasePhnL, phosphonate C-P lyase sys | 1e-07 | |
| COG4559 | 259 | COG4559, COG4559, ABC-type hemin transport system, | 1e-07 | |
| cd03268 | 208 | cd03268, ABC_BcrA_bacitracin_resist, ATP-binding c | 1e-07 | |
| PRK09536 | 402 | PRK09536, btuD, corrinoid ABC transporter ATPase; | 1e-07 | |
| COG1134 | 249 | COG1134, TagH, ABC-type polysaccharide/polyol phos | 1e-07 | |
| PRK13644 | 274 | PRK13644, cbiO, cobalt transporter ATP-binding sub | 2e-07 | |
| PRK11607 | 377 | PRK11607, potG, putrescine transporter ATP-binding | 2e-07 | |
| PRK11308 | 327 | PRK11308, dppF, dipeptide transporter ATP-binding | 2e-07 | |
| PRK14257 | 329 | PRK14257, PRK14257, phosphate ABC transporter ATP- | 2e-07 | |
| TIGR03873 | 256 | TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC tra | 2e-07 | |
| cd03218 | 232 | cd03218, ABC_YhbG, ATP-binding cassette component | 2e-07 | |
| cd03271 | 261 | cd03271, ABC_UvrA_II, ATP-binding cassette domain | 2e-07 | |
| PRK14254 | 285 | PRK14254, PRK14254, phosphate ABC transporter ATP- | 3e-07 | |
| cd03213 | 194 | cd03213, ABCG_EPDR, Eye pigment and drug resistanc | 3e-07 | |
| COG4152 | 300 | COG4152, COG4152, ABC-type uncharacterized transpo | 3e-07 | |
| cd03266 | 218 | cd03266, ABC_NatA_sodium_exporter, ATP-binding cas | 4e-07 | |
| PRK13643 | 288 | PRK13643, cbiO, cobalt transporter ATP-binding sub | 4e-07 | |
| PRK14238 | 271 | PRK14238, PRK14238, phosphate transporter ATP-bind | 5e-07 | |
| PRK10908 | 222 | PRK10908, PRK10908, cell division protein FtsE; Pr | 5e-07 | |
| PRK11288 | 501 | PRK11288, araG, L-arabinose transporter ATP-bindin | 6e-07 | |
| PRK13541 | 195 | PRK13541, PRK13541, cytochrome c biogenesis protei | 7e-07 | |
| PRK14237 | 267 | PRK14237, PRK14237, phosphate transporter ATP-bind | 9e-07 | |
| PRK14251 | 251 | PRK14251, PRK14251, phosphate ABC transporter ATP- | 9e-07 | |
| PRK10070 | 400 | PRK10070, PRK10070, glycine betaine transporter AT | 9e-07 | |
| TIGR03258 | 362 | TIGR03258, PhnT, 2-aminoethylphosphonate ABC trans | 9e-07 | |
| PRK14261 | 253 | PRK14261, PRK14261, phosphate ABC transporter ATP- | 1e-06 | |
| PRK14259 | 269 | PRK14259, PRK14259, phosphate ABC transporter ATP- | 1e-06 | |
| TIGR02770 | 230 | TIGR02770, nickel_nikD, nickel import ATP-binding | 1e-06 | |
| PRK15134 | 529 | PRK15134, PRK15134, microcin C ABC transporter ATP | 1e-06 | |
| cd03269 | 210 | cd03269, ABC_putative_ATPase, ATP-binding cassette | 1e-06 | |
| PRK10535 | 648 | PRK10535, PRK10535, macrolide transporter ATP-bind | 1e-06 | |
| COG4778 | 235 | COG4778, PhnL, ABC-type phosphonate transport syst | 1e-06 | |
| PRK10522 | 547 | PRK10522, PRK10522, multidrug transporter membrane | 1e-06 | |
| TIGR01187 | 325 | TIGR01187, potA, spermidine/putrescine ABC transpo | 2e-06 | |
| PRK14268 | 258 | PRK14268, PRK14268, phosphate ABC transporter ATP- | 2e-06 | |
| PRK11124 | 242 | PRK11124, artP, arginine transporter ATP-binding s | 2e-06 | |
| PRK10261 | 623 | PRK10261, PRK10261, glutathione transporter ATP-bi | 2e-06 | |
| PRK11701 | 258 | PRK11701, phnK, phosphonate C-P lyase system prote | 2e-06 | |
| TIGR01188 | 302 | TIGR01188, drrA, daunorubicin resistance ABC trans | 2e-06 | |
| PRK10982 | 491 | PRK10982, PRK10982, galactose/methyl galaxtoside t | 2e-06 | |
| PRK10982 | 491 | PRK10982, PRK10982, galactose/methyl galaxtoside t | 2e-06 | |
| PRK14262 | 250 | PRK14262, PRK14262, phosphate ABC transporter ATP- | 3e-06 | |
| TIGR02982 | 220 | TIGR02982, heterocyst_DevA, ABC exporter ATP-bindi | 3e-06 | |
| COG4148 | 352 | COG4148, ModC, ABC-type molybdate transport system | 3e-06 | |
| PRK15134 | 529 | PRK15134, PRK15134, microcin C ABC transporter ATP | 3e-06 | |
| TIGR02323 | 253 | TIGR02323, CP_lyasePhnK, phosphonate C-P lyase sys | 3e-06 | |
| PRK14248 | 268 | PRK14248, PRK14248, phosphate ABC transporter ATP- | 4e-06 | |
| PRK10771 | 232 | PRK10771, thiQ, thiamine transporter ATP-binding s | 4e-06 | |
| COG4107 | 258 | COG4107, PhnK, ABC-type phosphonate transport syst | 4e-06 | |
| cd03215 | 182 | cd03215, ABC_Carb_Monos_II, Second domain of the A | 4e-06 | |
| COG4598 | 256 | COG4598, HisP, ABC-type histidine transport system | 5e-06 | |
| PRK13536 | 340 | PRK13536, PRK13536, nodulation factor exporter sub | 5e-06 | |
| PRK15112 | 267 | PRK15112, PRK15112, antimicrobial peptide ABC syst | 5e-06 | |
| PRK11300 | 255 | PRK11300, livG, leucine/isoleucine/valine transpor | 5e-06 | |
| cd03233 | 202 | cd03233, ABCG_PDR_domain1, First domain of the ple | 5e-06 | |
| PRK14249 | 251 | PRK14249, PRK14249, phosphate ABC transporter ATP- | 6e-06 | |
| COG0410 | 237 | COG0410, LivF, ABC-type branched-chain amino acid | 6e-06 | |
| TIGR01184 | 230 | TIGR01184, ntrCD, nitrate transport ATP-binding su | 6e-06 | |
| cd03217 | 200 | cd03217, ABC_FeS_Assembly, ABC-type transport syst | 6e-06 | |
| PRK09473 | 330 | PRK09473, oppD, oligopeptide transporter ATP-bindi | 6e-06 | |
| PRK13633 | 280 | PRK13633, PRK13633, cobalt transporter ATP-binding | 7e-06 | |
| TIGR00956 | 1394 | TIGR00956, 3a01205, Pleiotropic Drug Resistance (P | 8e-06 | |
| PRK14255 | 252 | PRK14255, PRK14255, phosphate ABC transporter ATP- | 9e-06 | |
| PRK13652 | 277 | PRK13652, cbiO, cobalt transporter ATP-binding sub | 9e-06 | |
| TIGR02314 | 343 | TIGR02314, ABC_MetN, D-methionine ABC transporter, | 1e-05 | |
| TIGR03005 | 252 | TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine AB | 1e-05 | |
| PRK14246 | 257 | PRK14246, PRK14246, phosphate ABC transporter ATP- | 1e-05 | |
| PRK14258 | 261 | PRK14258, PRK14258, phosphate ABC transporter ATP- | 1e-05 | |
| PRK13545 | 549 | PRK13545, tagH, teichoic acids export protein ATP- | 1e-05 | |
| cd03222 | 177 | cd03222, ABC_RNaseL_inhibitor, ATP-binding cassett | 1e-05 | |
| TIGR00957 | 1522 | TIGR00957, MRP_assoc_pro, multi drug resistance-as | 2e-05 | |
| PRK14243 | 264 | PRK14243, PRK14243, phosphate transporter ATP-bind | 2e-05 | |
| PRK11432 | 351 | PRK11432, fbpC, ferric transporter ATP-binding sub | 2e-05 | |
| PRK14260 | 259 | PRK14260, PRK14260, phosphate ABC transporter ATP- | 2e-05 | |
| PRK14265 | 274 | PRK14265, PRK14265, phosphate ABC transporter ATP- | 2e-05 | |
| COG4167 | 267 | COG4167, SapF, ABC-type antimicrobial peptide tran | 2e-05 | |
| cd03265 | 220 | cd03265, ABC_DrrA, Daunorubicin/doxorubicin resist | 2e-05 | |
| COG4586 | 325 | COG4586, COG4586, ABC-type uncharacterized transpo | 2e-05 | |
| PRK13543 | 214 | PRK13543, PRK13543, cytochrome c biogenesis protei | 2e-05 | |
| PRK14272 | 252 | PRK14272, PRK14272, phosphate ABC transporter ATP- | 3e-05 | |
| COG4136 | 213 | COG4136, COG4136, ABC-type uncharacterized transpo | 3e-05 | |
| TIGR01189 | 198 | TIGR01189, ccmA, heme ABC exporter, ATP-binding pr | 3e-05 | |
| PRK13549 | 506 | PRK13549, PRK13549, xylose transporter ATP-binding | 3e-05 | |
| COG2401 | 593 | COG2401, COG2401, ABC-type ATPase fused to a predi | 3e-05 | |
| TIGR00630 | 925 | TIGR00630, uvra, excinuclease ABC, A subunit | 3e-05 | |
| PRK15064 | 530 | PRK15064, PRK15064, ABC transporter ATP-binding pr | 3e-05 | |
| PRK11147 | 635 | PRK11147, PRK11147, ABC transporter ATPase compone | 3e-05 | |
| PRK13546 | 264 | PRK13546, PRK13546, teichoic acids export protein | 3e-05 | |
| COG4161 | 242 | COG4161, ArtP, ABC-type arginine transport system, | 4e-05 | |
| PRK11247 | 257 | PRK11247, ssuB, aliphatic sulfonates transport ATP | 4e-05 | |
| TIGR01288 | 303 | TIGR01288, nodI, ATP-binding ABC transporter famil | 4e-05 | |
| TIGR03410 | 230 | TIGR03410, urea_trans_UrtE, urea ABC transporter, | 4e-05 | |
| PRK10584 | 228 | PRK10584, PRK10584, putative ABC transporter ATP-b | 4e-05 | |
| COG0178 | 935 | COG0178, UvrA, Excinuclease ATPase subunit [DNA re | 4e-05 | |
| PRK14273 | 254 | PRK14273, PRK14273, phosphate ABC transporter ATP- | 5e-05 | |
| PRK14241 | 258 | PRK14241, PRK14241, phosphate transporter ATP-bind | 6e-05 | |
| PRK14274 | 259 | PRK14274, PRK14274, phosphate ABC transporter ATP- | 6e-05 | |
| PRK13537 | 306 | PRK13537, PRK13537, nodulation ABC transporter Nod | 6e-05 | |
| TIGR01257 | 2272 | TIGR01257, rim_protein, retinal-specific rim ABC t | 6e-05 | |
| PRK14263 | 261 | PRK14263, PRK14263, phosphate ABC transporter ATP- | 7e-05 | |
| PRK10895 | 241 | PRK10895, PRK10895, lipopolysaccharide ABC transpo | 8e-05 | |
| COG0396 | 251 | COG0396, sufC, Cysteine desulfurase activator ATPa | 9e-05 | |
| PRK14252 | 265 | PRK14252, PRK14252, phosphate ABC transporter ATP- | 1e-04 | |
| COG4133 | 209 | COG4133, CcmA, ABC-type transport system involved | 1e-04 | |
| PRK13539 | 207 | PRK13539, PRK13539, cytochrome c biogenesis protei | 1e-04 | |
| PRK10938 | 490 | PRK10938, PRK10938, putative molybdenum transport | 1e-04 | |
| PRK10762 | 501 | PRK10762, PRK10762, D-ribose transporter ATP bindi | 1e-04 | |
| PLN03073 | 718 | PLN03073, PLN03073, ABC transporter F family; Prov | 1e-04 | |
| PLN03140 | 1470 | PLN03140, PLN03140, ABC transporter G family membe | 1e-04 | |
| cd03240 | 204 | cd03240, ABC_Rad50, ATP-binding cassette domain of | 1e-04 | |
| COG3845 | 501 | COG3845, COG3845, ABC-type uncharacterized transpo | 2e-04 | |
| COG1101 | 263 | COG1101, PhnK, ABC-type uncharacterized transport | 2e-04 | |
| PRK10261 | 623 | PRK10261, PRK10261, glutathione transporter ATP-bi | 2e-04 | |
| TIGR03740 | 223 | TIGR03740, galliderm_ABC, gallidermin-class lantib | 2e-04 | |
| PRK13651 | 305 | PRK13651, PRK13651, cobalt transporter ATP-binding | 2e-04 | |
| cd03238 | 176 | cd03238, ABC_UvrA, ATP-binding cassette domain of | 2e-04 | |
| PRK14275 | 286 | PRK14275, PRK14275, phosphate ABC transporter ATP- | 3e-04 | |
| PRK09544 | 251 | PRK09544, znuC, high-affinity zinc transporter ATP | 3e-04 | |
| PRK10636 | 638 | PRK10636, PRK10636, putative ABC transporter ATP-b | 3e-04 | |
| cd03227 | 162 | cd03227, ABC_Class2, ATP-binding cassette domain o | 3e-04 | |
| cd03267 | 236 | cd03267, ABC_NatA_like, ATP-binding cassette domai | 4e-04 | |
| PRK13538 | 204 | PRK13538, PRK13538, cytochrome c biogenesis protei | 4e-04 | |
| TIGR00956 | 1394 | TIGR00956, 3a01205, Pleiotropic Drug Resistance (P | 4e-04 | |
| PRK13638 | 271 | PRK13638, cbiO, cobalt transporter ATP-binding sub | 5e-04 | |
| PRK11614 | 237 | PRK11614, livF, leucine/isoleucine/valine transpor | 5e-04 | |
| PRK10762 | 501 | PRK10762, PRK10762, D-ribose transporter ATP bindi | 5e-04 | |
| PRK13543 | 214 | PRK13543, PRK13543, cytochrome c biogenesis protei | 5e-04 | |
| PRK14239 | 252 | PRK14239, PRK14239, phosphate transporter ATP-bind | 6e-04 | |
| PLN03232 | 1495 | PLN03232, PLN03232, ABC transporter C family membe | 7e-04 | |
| PTZ00243 | 1560 | PTZ00243, PTZ00243, ABC transporter; Provisional | 7e-04 | |
| PRK10619 | 257 | PRK10619, PRK10619, histidine/lysine/arginine/orni | 7e-04 | |
| TIGR01978 | 243 | TIGR01978, sufC, FeS assembly ATPase SufC | 7e-04 | |
| PRK11288 | 501 | PRK11288, araG, L-arabinose transporter ATP-bindin | 7e-04 | |
| smart00382 | 148 | smart00382, AAA, ATPases associated with a variety | 7e-04 | |
| cd03234 | 226 | cd03234, ABCG_White, White pigment protein homolog | 8e-04 | |
| PRK11629 | 233 | PRK11629, lolD, lipoprotein transporter ATP-bindin | 8e-04 | |
| PRK14267 | 253 | PRK14267, PRK14267, phosphate ABC transporter ATP- | 0.001 | |
| PRK15439 | 510 | PRK15439, PRK15439, autoinducer 2 ABC transporter | 0.001 | |
| PRK13549 | 506 | PRK13549, PRK13549, xylose transporter ATP-binding | 0.001 | |
| PRK15064 | 530 | PRK15064, PRK15064, ABC transporter ATP-binding pr | 0.001 | |
| TIGR03269 | 520 | TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc | 0.002 | |
| TIGR03719 | 552 | TIGR03719, ABC_ABC_ChvD, ATP-binding cassette prot | 0.002 | |
| PRK09700 | 510 | PRK09700, PRK09700, D-allose transporter ATP-bindi | 0.002 | |
| PRK11147 | 635 | PRK11147, PRK11147, ABC transporter ATPase compone | 0.002 | |
| cd03291 | 282 | cd03291, ABCC_CFTR1, ATP-binding cassette domain o | 0.003 | |
| PRK14256 | 252 | PRK14256, PRK14256, phosphate ABC transporter ATP- | 0.003 | |
| PRK10418 | 254 | PRK10418, nikD, nickel transporter ATP-binding pro | 0.003 | |
| PRK15439 | 510 | PRK15439, PRK15439, autoinducer 2 ABC transporter | 0.003 | |
| PRK10636 | 638 | PRK10636, PRK10636, putative ABC transporter ATP-b | 0.003 | |
| cd03223 | 166 | cd03223, ABCD_peroxisomal_ALDP, ATP-binding casset | 0.004 | |
| TIGR02633 | 500 | TIGR02633, xylG, D-xylose ABC transporter, ATP-bin | 0.004 |
| >gnl|CDD|213216 cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins | Back alignment and domain information |
|---|
Score = 415 bits (1070), Expect = e-137
Identities = 148/239 (61%), Positives = 193/239 (80%), Gaps = 1/239 (0%)
Query: 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 443
IE ++V F YP+RP+ I G S++I G T ALVG SG GKSTV+SL+ERFYDP +GE+
Sbjct: 1 IEFKNVSFRYPSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEI 60
Query: 444 LIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAK 503
L+DG+++++ L+W+R +IGLVSQEPVLF G+I +NI YGK DAT EE+ A + AN
Sbjct: 61 LLDGVDIRDLNLRWLRSQIGLVSQEPVLFDGTIAENIRYGKPDATDEEVEEAAKKANIHD 120
Query: 504 FIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQE 563
FI LP G DTLVGE G+QLSGGQKQRIAIARA+L++P+ILLLDEATSALDAESEK+VQE
Sbjct: 121 FIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRNPKILLLDEATSALDAESEKLVQE 180
Query: 564 ALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVEDPEGAYSQLIRLQ 622
ALDR M RTT+++AHRLST+RNAD+IAV+ G++VE+GTH +L+ +G Y++L++ Q
Sbjct: 181 ALDRAMKGRTTIVIAHRLSTIRNADLIAVLQNGQVVEQGTHDELMA-QKGVYAKLVKAQ 238
|
MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. Length = 238 |
| >gnl|CDD|131259 TIGR02204, MsbA_rel, ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Score = 417 bits (1075), Expect = e-133
Identities = 196/546 (35%), Positives = 310/546 (56%), Gaps = 2/546 (0%)
Query: 77 LMTLLFGDLINTFGDNQNNSETVDKVSKVAVKFVYLGIGSGIASFLQVTCWMITGERQAT 136
TL + D+ + ++ +++ + + + + + + GER
Sbjct: 32 AATLSLPYAVRLMIDHGFSKDSSGLLNRYFAFLLVVALVLALGTAARFYLVTWLGERVVA 91
Query: 137 RIRGLYLKTILRQDVAFFDNETNTGEVVGRMSGDTVLIQDAMGEKVGKFLQLMATFLGGF 196
IR ++ +FFD +GEVV R++ DT L+Q +G + L+ +GG
Sbjct: 92 DIRRAVFAHLISLSPSFFDK-NRSGEVVSRLTTDTTLLQSVIGSSLSMALRNALMCIGGL 150
Query: 197 LIAFIKGWLLTLVMLSSIPLLAMSGGVMAIMISKMSSRGQGAYAKAASVVEQTIGSIRTV 256
++ FI LT ++L ++PL+ + + + K+S Q A A S +T+G+IRTV
Sbjct: 151 IMMFITSPKLTSLVLLAVPLVLLPILLFGRRVRKLSRESQDRIADAGSYAGETLGAIRTV 210
Query: 257 ASFTGEKQAMSNYKKFLVTAYKSGVQEGLAAGIGLGMVMLIVFCSYALSVWYGGKLILEE 316
+F E S + + AY++ Q + +V+++VF + +W G ++
Sbjct: 211 QAFGHEDAERSRFGGAVEKAYEAARQRIRTRALLTAIVIVLVFGAIVGVLWVGAHDVIAG 270
Query: 317 GYNGGQVVNVMVAVLTGSMSLGEASPCLSAFGAGQAAAFKMFETINRKPEIDAYDTKGKI 376
+ G + + + + S+G S AA ++ E + +P+I A +
Sbjct: 271 KMSAGTLGQFVFYAVMVAGSIGTLSEVWGELQRAAGAAERLIELLQAEPDIKAPAHPKTL 330
Query: 377 LDDIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFY 436
+RG+IE V F+YPARP++ G ++++ G T ALVG SG+GKST+ L+ RFY
Sbjct: 331 PVPLRGEIEFEQVNFAYPARPDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFY 390
Query: 437 DPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVAT 496
DPQ+G +L+DG++L++ +R ++ LV Q+PVLF S+ +NI YG+ DAT EE+ A
Sbjct: 391 DPQSGRILLDGVDLRQLDPAELRARMALVPQDPVLFAASVMENIRYGRPDATDEEVEAAA 450
Query: 497 ELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAE 556
A+A +FI LP+G DT +GE G LSGGQ+QRIAIARAILKD ILLLDEATSALDAE
Sbjct: 451 RAAHAHEFISALPEGYDTYLGERGVTLSGGQRQRIAIARAILKDAPILLLDEATSALDAE 510
Query: 557 SEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVEDPEGAYS 616
SE++VQ+AL+ +M RTT+I+AHRL+TV AD I V+ +G+IV +GTH++L+ G Y+
Sbjct: 511 SEQLVQQALETLMKGRTTLIIAHRLATVLKADRIVVMDQGRIVAQGTHAELIAK-GGLYA 569
Query: 617 QLIRLQ 622
+L RLQ
Sbjct: 570 RLARLQ 575
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. Length = 576 |
| >gnl|CDD|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 416 bits (1071), Expect = e-132
Identities = 191/580 (32%), Positives = 324/580 (55%), Gaps = 16/580 (2%)
Query: 44 VPFYKLFTFADSADTALMIIGSIGAIGNGLCLPLMTLLFGDLINTFGDNQNNSETVDKVS 103
+L + L I+ + + L LPL L G +I+ + ++
Sbjct: 2 SLLRRLLKYLKYKLLLLAILLLLLSALLSLLLPL---LIGRIIDAL------LADLGELL 52
Query: 104 KVAVKFVYLGIGSGIASFLQVTCWMITGERQATRIRGLYLKTILRQDVAFFDNETNTGEV 163
++ + + L + G+ LQ G++ +R + +LR ++FFD +G++
Sbjct: 53 ELLLLLLLLALLGGVLRALQSYLGSRLGQKIVADLRRDLFEKLLRLPLSFFDK-AKSGDL 111
Query: 164 VGRMSGDTVLIQDAMGEKVGKFLQLMATFLGGFLIAFIKGWLLTLVMLSSIPLLAMSGGV 223
+ R++ D + + + + + +G ++ F W L L++L +PLLA+ +
Sbjct: 112 ISRLTNDVEAVSNLVSTVLVLVFTSILLLIGSLVLLFSLSWRLALILLLILPLLALVLSL 171
Query: 224 MAIMISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYKSGVQE 283
+A K+S R + A + + + +++ IR + +F E + + +++ ++ ++
Sbjct: 172 LARKSRKLSRRVREALGELNARLLESLSGIRVIKAFGAEDRELKRFEEANEELRRANLRA 231
Query: 284 GLAAGIGLGMVMLIVFCSYALSVWYGGKLILEEGYNGGQVVNVMVAVLTGSMSLGEASPC 343
+ +++L+ L + GG L+L G + ++ +L + +
Sbjct: 232 SRLEALLAPLMLLLSSLGTVLVLALGGFLVLSGSLTVGALAAFILYLLRLLTPILQLGEV 291
Query: 344 LSAFGAGQAAAFKMFETINRKPEIDAYDTKGKILDDIRGDIELRDVYFSYPARPNEQIFS 403
+S AAA ++FE ++ +PE++ K G IE +V FSYP + +
Sbjct: 292 VSLLQRASAAAERLFELLDEEPEVEDPPDPLKDTI---GSIEFENVSFSYP--GKKPVLK 346
Query: 404 GFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIG 463
S SI G A+VG SGSGKST+I L+ R YDP +GE+LIDGI++++ L +RK+IG
Sbjct: 347 DISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLDSLRKRIG 406
Query: 464 LVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQL 523
+VSQ+P+LF+G+I++NIA G+ DAT EEI A +LANA +FI LP G DT+VGE G L
Sbjct: 407 IVSQDPLLFSGTIRENIALGRPDATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNL 466
Query: 524 SGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLST 583
SGGQ+QR+AIARA+L++P IL+LDEATSALD E+E ++Q+AL +++ RTT+I+AHRLST
Sbjct: 467 SGGQRQRLAIARALLRNPPILILDEATSALDTETEALIQDALKKLLKGRTTLIIAHRLST 526
Query: 584 VRNADMIAVIHRGKIVEKGTHSKLVEDPEGAYSQLIRLQE 623
++NAD I V+ G+IVE+GTH +L+ G Y++L + Q
Sbjct: 527 IKNADRIIVLDNGRIVERGTHEELLAK-GGLYARLYQAQG 565
|
Length = 567 |
| >gnl|CDD|233209 TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Score = 416 bits (1070), Expect = e-130
Identities = 208/520 (40%), Positives = 305/520 (58%), Gaps = 30/520 (5%)
Query: 112 LGIGSGIASFLQVTCWMITGERQATRIRGLYLKTILRQDVAFFDNETNTGEVVGRMSGDT 171
L I S +++ L+ + T R RIR +++LRQD+ FFD E TGE+ R+S DT
Sbjct: 210 LSIASSVSAGLRGGSFNYTMARINLRIREDLFRSLLRQDLGFFD-ENKTGELTSRLSSDT 268
Query: 172 VLIQDAMGEKVGKFLQLMATFLGGFLIAFIKGWLLTLVMLSSIPLLAMSGGVMAIMISKM 231
+ ++ V L+ + LG LT+V L ++PL+ ++ V +
Sbjct: 269 QTMSRSLSLNVNVLLRNLVMLLGLLGFMLWLSPRLTMVTLINLPLVFLAEKVFGKRYQLL 328
Query: 232 SSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYKSGVQEGLA-AG-- 288
S Q A AKA V E+ + +RTV SF E+ S +K+ L + ++ LA AG
Sbjct: 329 SEELQEAVAKANQVAEEALSGMRTVRSFAAEEGEASRFKEALEETLQLNKRKALAYAGYL 388
Query: 289 -----IGLGMVMLIVFCSYALSVWYGGKLILEEGYNGGQVVNVMVAVLTGSMSLGEASPC 343
+G+ + +L++ +YGG+L+L + G +V+ ++ LGEA
Sbjct: 389 WTTSVLGMLIQVLVL--------YYGGQLVLTGKVSSGNLVSFLLY----QEQLGEAVRV 436
Query: 344 LSAFGAG--QA--AAFKMFETINRKPEIDAYDTKGKILDDIRGDIELRDVYFSYPARPNE 399
LS +G QA A+ K+FE ++RKP I T ++ G IE +DV FSYP RP+
Sbjct: 437 LSYVYSGMMQAVGASEKVFEYLDRKPNIP--LTGTLAPLNLEGLIEFQDVSFSYPNRPDV 494
Query: 400 QIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIR 459
+ G + ++ G ALVG SGSGKSTV +L++ Y P G+VL+DG+ L ++ ++
Sbjct: 495 PVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQYDHHYLH 554
Query: 460 KKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEH 519
+++ LV QEPVLF+GS+++NIAYG D EEI A + ANA FI + P G DT VGE
Sbjct: 555 RQVALVGQEPVLFSGSVRENIAYGLTDTPDEEIMAAAKAANAHDFIMEFPNGYDTEVGEK 614
Query: 520 GTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAH 579
G+QLSGGQKQRIAIARA+++ PR+L+LDEATSALDAE E+++QE R +RT +++AH
Sbjct: 615 GSQLSGGQKQRIAIARALVRKPRVLILDEATSALDAECEQLLQE--SRSRASRTVLLIAH 672
Query: 580 RLSTVRNADMIAVIHRGKIVEKGTHSKLVEDPEGAYSQLI 619
RLSTV AD I V+ +G +VE GTH +L+ED G Y L+
Sbjct: 673 RLSTVERADQILVLKKGSVVEMGTHKQLMEDQ-GCYKHLV 711
|
[Transport and binding proteins, Other]. Length = 711 |
| >gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Score = 417 bits (1073), Expect = e-124
Identities = 336/1262 (26%), Positives = 577/1262 (45%), Gaps = 208/1262 (16%)
Query: 6 NSNEASASKSQEEVGKDSSMSGNEHDSEKGKQTEKTESVPFYKLFTFADSADTALMIIGS 65
N++ ++EV K+ + G +K KT+ +PF+ F ++ L+ +
Sbjct: 11 NNSGGGNLSIKDEVEKELNKKGTFELYKK----IKTQKIPFFLPFKCLPASHRKLLGVSF 66
Query: 66 IGAIGNGLCLPLMTLLFGDLINTFGDNQNNSETVDKVSKVAVKFVYLGIGSGIASFLQVT 125
+ A +G LP +FG ++ N N E V+ + V +GI I SF+
Sbjct: 67 VCATISGGTLPFFVSVFGVIMK----NMNLGENVNDI---IFSLVLIGIFQFILSFISSF 119
Query: 126 CWMITGERQATRIRGLYLKTILRQDVAFFDNETNTGEVVGRMSGDTVLIQDAMGEKVG-K 184
C + + ++ +LK++ QD F DN N G +++ D + + +G K
Sbjct: 120 CMDVVTTKILKTLKLEFLKSVFYQDGQFHDN--NPGS---KLTSDLDFYLEQVNAGIGTK 174
Query: 185 FLQLM---ATFLGGFLIAFIKGWLLTLVMLSSIPLLAMSGGVMAIMISKMSSRGQGAYAK 241
F+ + + FLG ++ + K LTL + PL+ + G V+ K++ + Y
Sbjct: 175 FITIFTYASAFLGLYIWSLFKNARLTLCITCVFPLIYICG-VICNKKVKINKKTSLLYNN 233
Query: 242 -AASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYKSGVQEGLAAGIGLGMVMLIVFC 300
S++E+ + IRTV S+ GEK + + K ++ + +GM+ +
Sbjct: 234 NTMSIIEEALVGIRTVVSYCGEKTILKKFNLSEKLYSKYILKANFMESLHIGMINGFILA 293
Query: 301 SYALSVWYGGKLILEE--------GYNGGQVVNVMVAVLTGSMSLGEASPCLSAFGAGQA 352
SYA WYG ++I+ + ++GG V+++++ VL L P ++ +
Sbjct: 294 SYAFGFWYGTRIIISDLSNQQPNNDFHGGSVISILLGVLISMFMLTIILPNITEYMKSLE 353
Query: 353 AAFKMFETINRKPEIDAYDTKGKILDDIRGDIELRDVYFSYPARPNEQIFSGFSISISSG 412
A ++E INRKP ++ D GK L DI+ I+ ++V F Y R + +I+ + +++ G
Sbjct: 354 ATNSLYEIINRKPLVENND-DGKKLKDIK-KIQFKNVRFHYDTRKDVEIYKDLNFTLTEG 411
Query: 413 TTAALVGQSGSGKSTVISLIERFYDPQAGEVLI-DGINLKEFQLQWIRKKIGLVSQEPVL 471
T A VG+SG GKST++ LIER YDP G+++I D NLK+ L+W R KIG+VSQ+P+L
Sbjct: 412 KTYAFVGESGCGKSTILKLIERLYDPTEGDIIINDSHNLKDINLKWWRSKIGVVSQDPLL 471
Query: 472 FTGSIKDNIAY------------------------GKDDATTEEIRVA------------ 495
F+ SIK+NI Y K+ + + A
Sbjct: 472 FSNSIKNNIKYSLYSLKDLEALSNYYNEDGNDSQENKNKRNSCRAKCAGDLNDMSNTTDS 531
Query: 496 ---------------TELANAAK------FIDKLPQGIDTLVGEHGTQLSGGQKQRIAIA 534
+E+ + +K F+ LP +TLVG + ++LSGGQKQRI+IA
Sbjct: 532 NELIEMRKNYQTIKDSEVVDVSKKVLIHDFVSALPDKYETLVGSNASKLSGGQKQRISIA 591
Query: 535 RAILKDPRILLLDEATSALDAESEKVVQEALDRIM--VNRTTVIVAHRLSTVRNADMIAV 592
RAI+++P+IL+LDEATS+LD +SE +VQ+ ++ + NR T+I+AHRLST+R A+ I V
Sbjct: 592 RAIIRNPKILILDEATSSLDNKSEYLVQKTINNLKGNENRITIIIAHRLSTIRYANTIFV 651
Query: 593 I---HRGK--------------------------------------------IVEKGTHS 605
+ RG I+E+GTH
Sbjct: 652 LSNRERGSTVDVDIIGEDPTKDNKENNNKNNKDDNNNNNNNNNNKINNAGSYIIEQGTHD 711
Query: 606 KLVEDPEGAYSQLIRLQEANKESEQTIDGQRKSEISMESLRHSSHRMSLRRSISRGSSIG 665
L+++ G Y +I Q+ + + D + S+ M+S + G+S
Sbjct: 712 ALMKNKNGIYYTMINNQKVSSKKSSNNDNDKDSD--MKSSAYKDSERGYDPDEMNGNSKH 769
Query: 666 NSSRHSISVSFGLPSGQFADTALGEPAGPSQPTEEVAPEVPTR-RLAYLN----KPEIPV 720
+ S S + ++ G + + P+ P R+ Y K ++ +
Sbjct: 770 ENESASNKKSCKMSDENASENNAGGKLPFLRNLFKRKPKAPNNLRIVYREIFSYKKDVTI 829
Query: 721 ILAGTIAAMANGVILPIYGLLISSVIETFFKPPHELKKDSRFWALIYLALGAGSFLLSPA 780
I + A G + P++ LL + + T F + L+ +S ++L L + F+
Sbjct: 830 IALSILVA---GGLYPVFALLYAKYVSTLFDFAN-LEANSNKYSLYILVIAIAMFISETL 885
Query: 781 QSYFFAVAGNKLIQRIRSMCFEKVIHMEVSWFDEPEHSSGAIGARLSADAASVRALVGDA 840
++Y+ V G K+ + ++ FE +++ E+S+FD+ +H+ G + A ++ D
Sbjct: 886 KNYYNNVIGEKVEKTMKRRLFENILYQEISFFDQDKHAPGLLSAHINRD----------- 934
Query: 841 LARIVQNISTAAAGLIIAFTASWQLALIILVM----LPLI-GVSGYTQMKFMKGFSADAK 895
V + T I+ FT L L+ +VM P++ V T FM+ F+ A+
Sbjct: 935 ----VHLLKTGLVNNIVIFTHFIVLFLVSMVMSFYFCPIVAAVLTGTYFIFMRVFAIRAR 990
Query: 896 MK-------------------------YEEASQVANDAVGSIRTVASFCAEEKVMQLYKK 930
+ +++ S + +A ++ TV + E+ L +K
Sbjct: 991 LTANKDVEKKEINQPGTVFAYNSDDEIFKDPSFLIQEAFYNMNTVIIYGLEDYFCNLIEK 1050
Query: 931 KCEAPMKTGIRQGMVSGGGFG----ASFFL-LFAFYAASFYAGARLVEDGKATFSDVFKV 985
+ K R+ +V+ +G A F+ FA++ SF L+ G D K
Sbjct: 1051 AIDYSNKGQKRKTLVNSMLWGFSQSAQLFINSFAYWFGSF-----LIRRGTILVDDFMKS 1105
Query: 986 FFSLTMTAIGISQSSSFSSDSNKAKSAAASIFAIIDRESKIDPSDESGTILE---DVKGE 1042
F+ T + S DS AK + + +I R+S ID D G ++ D+KG+
Sbjct: 1106 LFTFLFTGSYAGKLMSLKGDSENAKLSFEKYYPLIIRKSNIDVRDNGGIRIKNKNDIKGK 1165
Query: 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHI 1102
IE+ V+F+Y SRP+V +++DL + KT A+VGE+GSGKSTV+SLL RFYD H
Sbjct: 1166 IEIMDVNFRYISRPNVPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHH 1225
Query: 1103 TL 1104
+
Sbjct: 1226 IV 1227
|
Length = 1466 |
| >gnl|CDD|225183 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 364 bits (937), Expect = e-111
Identities = 173/529 (32%), Positives = 283/529 (53%), Gaps = 25/529 (4%)
Query: 105 VAVKFVYLGIGSGIASFLQVTCWMITGERQATRIRGLYLKTILRQDVAFFDNETNTGEVV 164
+A+ + + + L+ G+R + G + + +LR +++F+ + GE++
Sbjct: 196 LAIGLLLAALFEALLRLLRTYLIAHLGKRLDLELSGRFFRHLLRLPLSYFEK-RSVGEII 254
Query: 165 GRMSGDTVLIQDAM-GEKVGKFLQLMATFLGGFLIAFIKGWLLTLVMLSSIPLLAMSGGV 223
R+ + I++ + G + + L+ + ++ W LTL++L++IPL + +
Sbjct: 255 SRVR-ELEQIREFLTGSILTLIIDLLFALIFLAVMFLY-SWKLTLIVLAAIPLNVLITLI 312
Query: 224 MAIMISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQAMSNYKKFL---VTAYKSG 280
++ + + + A+ S + +TI I TV + E + S + L V
Sbjct: 313 FQPLLRRKTRKLIEESAEQQSFLVETIKGIETVKALAAEPRFRSQWDNRLAKQVNIGFKT 372
Query: 281 VQEGLAAGIGLGMVMLIVFCSYALSVWYGGKLILEEGYNGGQVVNVMVAVLTGSMSLGEA 340
+ L ++ + S L +W+G L+LE GQ+V +L G
Sbjct: 373 EKLALILNTIKSLLQQL---SSVLILWFGAILVLEGELTLGQLV--AFNMLAGYFI---- 423
Query: 341 SPCLSAFGAGQA-----AAFKMFETI-NRKPEIDAYDTKGKILDDIRGDIELRDVYFSYP 394
SP A + I + PE + D L ++G+IE +V F Y
Sbjct: 424 SPITRLSQLWTDFQQAKVALERLGDILDTPPEQEG-DKTLIHLPKLQGEIEFENVSFRYG 482
Query: 395 ARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQ 454
+ S+ I G A+VG+SGSGKST++ L+ Y PQ G +L+DG++L +
Sbjct: 483 PDDPPVL-EDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLNDID 541
Query: 455 LQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDT 514
L +R+++G V Q+P LF+GSI++NIA G +AT EEI A +LA A +FI+ LP G DT
Sbjct: 542 LASLRRQVGYVLQDPFLFSGSIRENIALGNPEATDEEIIEAAQLAGAHEFIENLPMGYDT 601
Query: 515 LVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTT 574
VGE G LSGGQ+QR+A+ARA+L P+ILLLDEATSALD E+E ++ + L +I+ RT
Sbjct: 602 PVGEGGANLSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQNLLQILQGRTV 661
Query: 575 VIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVEDPEGAYSQLIRLQE 623
+I+AHRLST+R+AD I V+ +GKIVE+G+H +L+ G Y++L + QE
Sbjct: 662 IIIAHRLSTIRSADRIIVLDQGKIVEQGSHEELLAQ-GGLYARLYQQQE 709
|
Length = 709 |
| >gnl|CDD|213218 cd03251, ABCC_MsbA, ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 343 bits (883), Expect = e-110
Identities = 128/235 (54%), Positives = 175/235 (74%), Gaps = 2/235 (0%)
Query: 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 443
+E ++V F YP + S+ I +G T ALVG SGSGKST+++LI RFYD +G +
Sbjct: 1 VEFKNVTFRYPGDGPP-VLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRI 59
Query: 444 LIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAK 503
LIDG +++++ L +R++IGLVSQ+ LF ++ +NIAYG+ AT EE+ A ANA +
Sbjct: 60 LIDGHDVRDYTLASLRRQIGLVSQDVFLFNDTVAENIAYGRPGATREEVEEAARAANAHE 119
Query: 504 FIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQE 563
FI +LP+G DT++GE G +LSGGQ+QRIAIARA+LKDP IL+LDEATSALD ESE++VQ
Sbjct: 120 FIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPILILDEATSALDTESERLVQA 179
Query: 564 ALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVEDPEGAYSQL 618
AL+R+M NRTT ++AHRLST+ NAD I V+ GKIVE+GTH +L+ G Y++L
Sbjct: 180 ALERLMKNRTTFVIAHRLSTIENADRIVVLEDGKIVERGTHEELLAQ-GGVYAKL 233
|
MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 234 |
| >gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Score = 352 bits (905), Expect = e-108
Identities = 188/566 (33%), Positives = 303/566 (53%), Gaps = 13/566 (2%)
Query: 59 ALMIIGSIGAIGNGLCLPLMTLLFGDLIN-TFGDNQNNSETVDKVSKVAVKFVYLGIGSG 117
A +++ + I + L L++ FG + V + + L + G
Sbjct: 14 AGLVLAGVAMILVAATESTLAALLKPLLDDGFG-----GRDRSVLWWVPLVVIGLAVLRG 68
Query: 118 IASFLQVTCWMITGERQATRIRGLYLKTILRQDVAFFDNETNTGEVVGRMSGDTVLIQDA 177
I SF+ + IR + +L V+FFD + TG ++ R++ D+ + A
Sbjct: 69 ICSFVSTYLLSWVSNKVVRDIRVRMFEKLLGLPVSFFDRQ-PTGTLLSRITFDSEQVASA 127
Query: 178 MGEKVGKFLQLMATFLGGFLIAFIKGWLLTLVMLSSIPLLAMSGGVMAIMISKMSSRGQG 237
+ ++ T +G F++ W LTL+++ +P+L++ ++ + ++S Q
Sbjct: 128 ATDAFIVLVRETLTVIGLFIVLLYYSWQLTLIVVVMLPVLSILMRRVSKRLRRISKEIQN 187
Query: 238 AYAKAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYKSGVQEGLAAGIGLGMVMLI 297
+ + +V E+T+ R V F G+ + + ++ A I + LI
Sbjct: 188 SMGQVTTVAEETLQGYRVVKLFGGQAYETRRFDAVSNRNRRLAMKMTSAGSISSPITQLI 247
Query: 298 VFCSYALSVWYGGKLILEEGYNGGQVVNVMVAVLTGSMSLGEASPCLSAFGAGQAAAFKM 357
+ A+ ++ G + A++ L + + G AAA +
Sbjct: 248 ASLALAVVLFIALFQAQAGSLTAGDFTAFITAMIALIRPLKSLTNVNAPMQRGLAAAESL 307
Query: 358 FETINRKPEIDAYDTKGKILDDIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAAL 417
F ++ PE D T + ++ RGD+E R+V F YP R S+ I G T AL
Sbjct: 308 FTLLDSPPEKD---TGTRAIERARGDVEFRNVTFRYPGRDRP-ALDSISLVIEPGETVAL 363
Query: 418 VGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIK 477
VG+SGSGKST+++LI RFY+P +G++L+DG +L ++ L +R+++ LVSQ+ VLF +I
Sbjct: 364 VGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYTLASLRRQVALVSQDVVLFNDTIA 423
Query: 478 DNIAYGK-DDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARA 536
+NIAYG+ + A EI A A A F+DKLP G+DT +GE+G LSGGQ+QR+AIARA
Sbjct: 424 NNIAYGRTEQADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQRQRLAIARA 483
Query: 537 ILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRG 596
+LKD IL+LDEATSALD ESE++VQ AL+R+M RTT+++AHRLST+ AD I V+ G
Sbjct: 484 LLKDAPILILDEATSALDNESERLVQAALERLMQGRTTLVIAHRLSTIEKADRIVVMDDG 543
Query: 597 KIVEKGTHSKLVEDPEGAYSQLIRLQ 622
+IVE+GTH++L+ G Y+QL +Q
Sbjct: 544 RIVERGTHNELL-ARNGLYAQLHNMQ 568
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]. Length = 571 |
| >gnl|CDD|183016 PRK11176, PRK11176, lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Score = 320 bits (822), Expect = 9e-97
Identities = 194/572 (33%), Positives = 321/572 (56%), Gaps = 29/572 (5%)
Query: 61 MIIGSIGAIGNGLCLPLMTLLFGDLI-NTFGDNQNNSETVDKVSKVAVKFVYLGIGSGIA 119
+I+ + I N M L L+ + FG + S V K + V + L I GI
Sbjct: 27 LIVAGVALILNAASDTFMLSLLKPLLDDGFG-KADRS--VLKWMPLVV--IGLMILRGIT 81
Query: 120 SFLQVTC--WMITGERQATRIRGLYLKTILRQDVAFFDNETNTGEVVGRMSGDTVLIQDA 177
SF+ C W ++G+ T R L+ ++ V+FFD ++ TG ++ R++ D+ + +
Sbjct: 82 SFISSYCISW-VSGKVVMTMRRRLF-GHMMGMPVSFFDKQS-TGTLLSRITYDSEQVASS 138
Query: 178 MGEKVGKFLQLMATFLGGFLIAFIKGWLLTLVMLSSIPLLAMSGGVMAIMISKMSSRGQG 237
+ ++ A+ +G F++ F W L+L+++ P+++++ V++ +S Q
Sbjct: 139 SSGALITVVREGASIIGLFIMMFYYSWQLSLILIVIAPIVSIAIRVVSKRFRNISKNMQN 198
Query: 238 AYAKAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYKSGVQEGLAAGIGLGMVMLI 297
+ + EQ + + V F G++ + K + G++ A+ I ++ LI
Sbjct: 199 TMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNRMRQQGMKMVSASSISDPIIQLI 258
Query: 298 VFCSYALS-VWYGGKL--ILEEGYNGGQVV--NVMVAVLTGSMSLGEASPCLSAFGAGQA 352
S AL+ V Y +++ G V + M+A++ SL + + F G A
Sbjct: 259 A--SLALAFVLYAASFPSVMDTLTAGTITVVFSSMIALMRPLKSLTNVN---AQFQRGMA 313
Query: 353 AAFKMFETINRKPEIDAYDTKGKI-LDDIRGDIELRDVYFSYPARPNEQIFSGFSISISS 411
A +F ++ + E D +GK ++ +GDIE R+V F+YP + + I +
Sbjct: 314 ACQTLFAILDLEQEKD----EGKRVIERAKGDIEFRNVTFTYPGK-EVPALRNINFKIPA 368
Query: 412 GTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVL 471
G T ALVG+SGSGKST+ +L+ RFYD GE+L+DG +L+++ L +R ++ LVSQ L
Sbjct: 369 GKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHDLRDYTLASLRNQVALVSQNVHL 428
Query: 472 FTGSIKDNIAYGKDDA-TTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQR 530
F +I +NIAY + + + E+I A +A A FI+K+ G+DT++GE+G LSGGQ+QR
Sbjct: 429 FNDTIANNIAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQR 488
Query: 531 IAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMI 590
IAIARA+L+D IL+LDEATSALD ESE+ +Q ALD + NRT++++AHRLST+ AD I
Sbjct: 489 IAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEKADEI 548
Query: 591 AVIHRGKIVEKGTHSKLVEDPEGAYSQLIRLQ 622
V+ G+IVE+GTH++L+ G Y+QL ++Q
Sbjct: 549 LVVEDGEIVERGTHAELLAQ-NGVYAQLHKMQ 579
|
Length = 582 |
| >gnl|CDD|213220 cd03253, ABCC_ATM1_transporter, ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C | Back alignment and domain information |
|---|
Score = 306 bits (785), Expect = 4e-96
Identities = 117/239 (48%), Positives = 162/239 (67%), Gaps = 3/239 (1%)
Query: 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 443
IE +V F+Y P + S +I +G A+VG SGSGKST++ L+ RFYD +G +
Sbjct: 1 IEFENVTFAYD--PGRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSI 58
Query: 444 LIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAK 503
LIDG +++E L +R+ IG+V Q+ VLF +I NI YG+ DAT EE+ A + A
Sbjct: 59 LIDGQDIREVTLDSLRRAIGVVPQDTVLFNDTIGYNIRYGRPDATDEEVIEAAKAAQIHD 118
Query: 504 FIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQE 563
I + P G DT+VGE G +LSGG+KQR+AIARAILK+P ILLLDEATSALD +E+ +Q
Sbjct: 119 KIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPPILLLDEATSALDTHTEREIQA 178
Query: 564 ALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVEDPEGAYSQLIRLQ 622
AL + RTT+++AHRLST+ NAD I V+ G+IVE+GTH +L+ G Y+++ + Q
Sbjct: 179 ALRDVSKGRTTIVIAHRLSTIVNADKIIVLKDGRIVERGTHEELLA-KGGLYAEMWKAQ 236
|
ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 236 |
| >gnl|CDD|213221 cd03254, ABCC_Glucan_exporter_like, ATP-binding cassette domain of glucan transporter and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 304 bits (782), Expect = 7e-96
Identities = 113/228 (49%), Positives = 169/228 (74%), Gaps = 2/228 (0%)
Query: 382 GDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAG 441
G+IE +V FSY + + + SI G T A+VG +G+GK+T+I+L+ RFYDPQ G
Sbjct: 1 GEIEFENVNFSY--DEKKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKG 58
Query: 442 EVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANA 501
++LIDGI++++ + +R IG+V Q+ LF+G+I +NI G+ +AT EE+ A + A A
Sbjct: 59 QILIDGIDIRDISRKSLRSMIGVVLQDTFLFSGTIMENIRLGRPNATDEEVIEAAKEAGA 118
Query: 502 AKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVV 561
FI KLP G DT++GE+G LS G++Q +AIARA+L+DP+IL+LDEATS +D E+EK++
Sbjct: 119 HDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDPKILILDEATSNIDTETEKLI 178
Query: 562 QEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVE 609
QEAL+++M RT++I+AHRLST++NAD I V+ GKI+E+GTH +L+
Sbjct: 179 QEALEKLMKGRTSIIIAHRLSTIKNADKILVLDDGKIIEEGTHDELLA 226
|
Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 229 |
| >gnl|CDD|184214 PRK13657, PRK13657, cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 299 bits (767), Expect = 6e-89
Identities = 127/264 (48%), Positives = 172/264 (65%), Gaps = 7/264 (2%)
Query: 377 LDDIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFY 436
L ++G +E DV FSY Q S G T A+VG +G+GKST+I+L++R +
Sbjct: 328 LGRVKGAVEFDDVSFSYDNSR--QGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVF 385
Query: 437 DPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVAT 496
DPQ+G +LIDG +++ +R+ I +V Q+ LF SI+DNI G+ DAT EE+R A
Sbjct: 386 DPQSGRILIDGTDIRTVTRASLRRNIAVVFQDAGLFNRSIEDNIRVGRPDATDEEMRAAA 445
Query: 497 ELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAE 556
E A A FI++ P G DT+VGE G QLSGG++QR+AIARA+LKDP IL+LDEATSALD E
Sbjct: 446 ERAQAHDFIERKPDGYDTVVGERGRQLSGGERQRLAIARALLKDPPILILDEATSALDVE 505
Query: 557 SEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVEDPEGAYS 616
+E V+ ALD +M RTT I+AHRLSTVRNAD I V G++VE G+ +LV G ++
Sbjct: 506 TEAKVKAALDELMKGRTTFIIAHRLSTVRNADRILVFDNGRVVESGSFDELV-ARGGRFA 564
Query: 617 QLIR----LQEANKESEQTIDGQR 636
L+R LQE + + +G
Sbjct: 565 ALLRAQGMLQEDERRKQPAAEGAN 588
|
Length = 588 |
| >gnl|CDD|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 280 bits (719), Expect = 2e-82
Identities = 138/452 (30%), Positives = 232/452 (51%), Gaps = 16/452 (3%)
Query: 721 ILAGTIAAMANGVILPIYGLLISSVIETFFKPPHELKKDSRFWALIYLALGAGSFLLSPA 780
+L + + + ++ + LLI +I+ EL + L+ L L +L
Sbjct: 16 LLLAILLLLLSALLSLLLPLLIGRIIDALLADLGELLE----LLLLLLLLALLGGVLRAL 71
Query: 781 QSYFFAVAGNKLIQRIRSMCFEKVIHMEVSWFDEPEHSSGAIGARLSADAASVRALVGDA 840
QSY + G K++ +R FEK++ + +S+FD+ SG + +RL+ D +V LV
Sbjct: 72 QSYLGSRLGQKIVADLRRDLFEKLLRLPLSFFDK--AKSGDLISRLTNDVEAVSNLVSTV 129
Query: 841 LARIVQNISTAAAGLIIAFTASWQLALIILVMLPLIG-VSGYTQMKFMKGFSADAKMKYE 899
L + +I L++ F+ SW+LALI+L++LPL+ V K K +
Sbjct: 130 LVLVFTSILLLIGSLVLLFSLSWRLALILLLILPLLALVLSLLARKSRKLSRRVRE-ALG 188
Query: 900 EASQVANDAVGSIRTVASFCAEEKVMQLYKKKCEAPMKTGIRQGMVSGGGFGASFFLLFA 959
E + +++ IR + +F AE++ ++ +++ E + +R + L
Sbjct: 189 ELNARLLESLSGIRVIKAFGAEDRELKRFEEANEELRRANLRASRLEALLAPLMLLLSSL 248
Query: 960 FYAASFYAGARLVEDGKATFSDVFKVFFSLTMTAIG-ISQSSSFSSDSNKAKSAAASIFA 1018
G LV G T + F + + I Q S +A +AA +F
Sbjct: 249 GTVLVLALGGFLVLSGSLTVGALA-AFILYLLRLLTPILQLGEVVSLLQRASAAAERLFE 307
Query: 1019 IIDRESKIDPSDESGTILEDVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVG 1078
++D E +++ + L+D G IE +VSF YP V +D++ I G+ VA+VG
Sbjct: 308 LLDEEPEVEDPPDP---LKDTIGSIEFENVSFSYP--GKKPVLKDISFSIEPGEKVAIVG 362
Query: 1079 ESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRAN 1138
SGSGKST++ LL R YDP +G I +DG++I+ + L LR+++G+VSQ+P+LF+ TIR N
Sbjct: 363 PSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLDSLRKRIGIVSQDPLLFSGTIREN 422
Query: 1139 IAYGKGGDATEAEIQAASEMANAHKFICSLQQ 1170
IA G+ DAT+ EI+ A ++ANAH+FI +L
Sbjct: 423 IALGR-PDATDEEIEEALKLANAHEFIANLPD 453
|
Length = 567 |
| >gnl|CDD|213215 cd03248, ABCC_TAP, ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C | Back alignment and domain information |
|---|
Score = 265 bits (680), Expect = 1e-81
Identities = 111/221 (50%), Positives = 159/221 (71%)
Query: 378 DDIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYD 437
D ++G ++ ++V F+YP RP+ + S ++ G ALVG SGSGKSTV++L+E FY
Sbjct: 6 DHLKGIVKFQNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQ 65
Query: 438 PQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATE 497
PQ G+VL+DG + +++ +++ K+ LV QEPVLF S++DNIAYG + E ++ A +
Sbjct: 66 PQGGQVLLDGKPISQYEHKYLHSKVSLVGQEPVLFARSLQDNIAYGLQSCSFECVKEAAQ 125
Query: 498 LANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAES 557
A+A FI +L G DT VGE G+QLSGGQKQR+AIARA++++P++L+LDEATSALDAES
Sbjct: 126 KAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARALIRNPQVLILDEATSALDAES 185
Query: 558 EKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKI 598
E+ VQ+AL RT +++AHRLSTV AD I V+ G+I
Sbjct: 186 EQQVQQALYDWPERRTVLVIAHRLSTVERADQILVLDGGRI 226
|
TAP (Transporter Associated with Antigen Processing) is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. Length = 226 |
| >gnl|CDD|233596 TIGR01846, type_I_sec_HlyB, type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Score = 280 bits (719), Expect = 3e-81
Identities = 156/441 (35%), Positives = 236/441 (53%), Gaps = 52/441 (11%)
Query: 206 LTLVMLSSIPLLAM-SGGVMAIMISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQ 264
LT V++ S+ A+ S V I+ ++ + + + A + +VE G I T+ + E Q
Sbjct: 280 LTGVVIGSLVCYALLSVFVGPILRKRVEDKFERSAAATSFLVESVTG-IETIKATATEPQ 338
Query: 265 AMSNYKKFL---VTAYKSGVQEGLAAGIGLGMVMLIVFCSYALSVWYGGKLILEEGYNGG 321
+ + + L V A G AG + ++ + F A+ +W+G L
Sbjct: 339 FQNRWDRQLAAYVAASFRVTNLGNIAGQAIELIQKLTF---AILLWFGAHL--------- 386
Query: 322 QVVNVMVAVLTGSMSLGEASPCLSAFG--AGQ--------AAAFKMFE----TINRKPEI 367
V+ G++S G+ L AF AG+ A ++ F+ + R +I
Sbjct: 387 --------VIGGALSPGQ----LVAFNMLAGRVTQPVLRLAQLWQDFQQTGIALERLGDI 434
Query: 368 -----DAYDTKGKILDDIRGDIELRDVYFSY-PARPNEQIFSGFSISISSGTTAALVGQS 421
+ L ++RG I ++ F Y P P ++ S ++ I G +VG S
Sbjct: 435 LNSPTEPRSAGLAALPELRGAITFENIRFRYAPDSP--EVLSNLNLDIKPGEFIGIVGPS 492
Query: 422 GSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIA 481
GSGKST+ L++R Y PQ G+VL+DG++L W+R+++G+V QE VLF+ SI+DNIA
Sbjct: 493 GSGKSTLTKLLQRLYTPQHGQVLVDGVDLAIADPAWLRRQMGVVLQENVLFSRSIRDNIA 552
Query: 482 YGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDP 541
A E + A +LA A FI +LPQG +T VGE G LSGGQ+QRIAIARA++ +P
Sbjct: 553 LCNPGAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQRQRIAIARALVGNP 612
Query: 542 RILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEK 601
RIL+ DEATSALD ESE ++ + I RT +I+AHRLSTVR D I V+ +G+I E
Sbjct: 613 RILIFDEATSALDYESEALIMRNMREICRGRTVIIIAHRLSTVRACDRIIVLEKGQIAES 672
Query: 602 GTHSKLVEDPEGAYSQLIRLQ 622
G H +L+ G Y++L + Q
Sbjct: 673 GRHEELLALQ-GLYARLWQQQ 692
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 694 |
| >gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug resistance protein-like transporters | Back alignment and domain information |
|---|
Score = 258 bits (662), Expect = 1e-79
Identities = 92/214 (42%), Positives = 130/214 (60%), Gaps = 43/214 (20%)
Query: 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 443
IE ++V FSYP RP + S++I G A+VG SGSGKST++ L+ R YDP +GE+
Sbjct: 1 IEFKNVSFSYPGRPK-PVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEI 59
Query: 444 LIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAK 503
LIDG++L++ L+ +RK I V Q+P LF+G+I++NI
Sbjct: 60 LIDGVDLRDLDLESLRKNIAYVPQDPFLFSGTIRENI----------------------- 96
Query: 504 FIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQE 563
LSGGQ+QRIAIARA+L+DP IL+LDEATSALD E+E ++ E
Sbjct: 97 -------------------LSGGQRQRIAIARALLRDPPILILDEATSALDPETEALILE 137
Query: 564 ALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGK 597
AL + +T +++AHRLST+R+AD I V+ G+
Sbjct: 138 ALRALAKGKTVIVIAHRLSTIRDADRIIVLDDGR 171
|
The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 171 |
| >gnl|CDD|213219 cd03252, ABCC_Hemolysin, ATP-binding cassette domain of hemolysin B, subfamily C | Back alignment and domain information |
|---|
Score = 257 bits (659), Expect = 1e-78
Identities = 117/240 (48%), Positives = 158/240 (65%), Gaps = 4/240 (1%)
Query: 384 IELRDVYFSYPARPNE-QIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGE 442
I V F Y +P+ I S+ I G +VG+SGSGKST+ LI+RFY P+ G
Sbjct: 1 ITFEHVRFRY--KPDGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGR 58
Query: 443 VLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAA 502
VL+DG +L W+R+++G+V QE VLF SI+DNIA + E + A +LA A
Sbjct: 59 VLVDGHDLALADPAWLRRQVGVVLQENVLFNRSIRDNIALADPGMSMERVIEAAKLAGAH 118
Query: 503 KFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQ 562
FI +LP+G DT+VGE G LSGGQ+QRIAIARA++ +PRIL+ DEATSALD ESE +
Sbjct: 119 DFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPRILIFDEATSALDYESEHAIM 178
Query: 563 EALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVEDPEGAYSQLIRLQ 622
+ I RT +I+AHRLSTV+NAD I V+ +G+IVE+G+H +L+ G Y+ L +LQ
Sbjct: 179 RNMHDICAGRTVIIIAHRLSTVKNADRIIVMEKGRIVEQGSHDELL-AENGLYAYLYQLQ 237
|
The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. Length = 237 |
| >gnl|CDD|227590 COG5265, ATM1, ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 266 bits (681), Expect = 4e-78
Identities = 141/366 (38%), Positives = 208/366 (56%), Gaps = 7/366 (1%)
Query: 255 TVASFTGEKQAMSNYKKFLVTAYKSGVQEGLAAGIGLGMVMLIVFCSYALSVWYGGKLIL 314
TV F E+ Y L T K+ ++ ++ + L +F + + L +
Sbjct: 134 TVKYFGNEEYEAVRYDHALETYEKAAIKVHVSLLV-LNFGQTAIFSTGLRVMMTMSALGV 192
Query: 315 EEGYNG-GQVVNVMVAVLTGSMSLGEASPCLSAFGAGQAAAFKMFETINRKPEIDAYDTK 373
EEG G +VNV + S+ L KMF+ ++ + E+
Sbjct: 193 EEGQLTVGDLVNVNALLFQLSIPLNFLGFSYREIRQALTDMEKMFDLLDVEAEVS-DAPD 251
Query: 374 GKILDDIR-GDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLI 432
L +R G + +V F+Y P I +G S +I G T A+VG+SG+GKST++ L+
Sbjct: 252 APPLWPVRLGAVAFINVSFAY--DPRRPILNGISFTIPLGKTVAIVGESGAGKSTILRLL 309
Query: 433 ERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEI 492
RFYD +G + IDG ++++ Q +R+ IG+V Q+ VLF +I NI YG+ DAT EE+
Sbjct: 310 FRFYDVNSGSITIDGQDIRDVTQQSLRRAIGIVPQDTVLFNDTIAYNIKYGRPDATAEEV 369
Query: 493 RVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSA 552
A E A FI LP+G DT VGE G +LSGG+KQR+AIAR ILK+P IL+LDEATSA
Sbjct: 370 GAAAEAAQIHDFIQSLPEGYDTGVGERGLKLSGGEKQRVAIARTILKNPPILILDEATSA 429
Query: 553 LDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVEDPE 612
LD +E+ +Q AL + RTT+++AHRLST+ +AD I V+ G+IVE+GTH +L+
Sbjct: 430 LDTHTEQAIQAALREVSAGRTTLVIAHRLSTIIDADEIIVLDNGRIVERGTHEELL-AAG 488
Query: 613 GAYSQL 618
G Y+++
Sbjct: 489 GLYAEM 494
|
Length = 497 |
| >gnl|CDD|233209 TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Score = 254 bits (651), Expect = 7e-72
Identities = 144/480 (30%), Positives = 236/480 (49%), Gaps = 25/480 (5%)
Query: 699 EEVAPEVPTRRLAYLNKPEIPVILAG----TIAAMANGVILPIY-GLLISSVIETFFKPP 753
E A RL L+ + P +++ T++++ + +P Y G +I ++ K P
Sbjct: 143 SETAD--LLFRLLGLSGRDWPWLISAFVFLTLSSLG-EMFIPFYTGRVIDTLGGD--KGP 197
Query: 754 HELKKDSRFWALIYLALGAGSFLLSPAQSYFFAVAGNKLIQRIRSMCFEKVIHMEVSWFD 813
L F L L S + + + F ++ RIR F ++ ++ +FD
Sbjct: 198 PALASAIFFMCL----LSIASSVSAGLRGGSFNYTMARINLRIREDLFRSLLRQDLGFFD 253
Query: 814 EPEHSSGAIGARLSADAASVRALVGDALARIVQNISTAAAGLIIAFTASWQLALIILVML 873
E + +G + +RLS+D ++ + + +++N+ L S +L ++ L+ L
Sbjct: 254 E--NKTGELTSRLSSDTQTMSRSLSLNVNVLLRNLVMLLGLLGFMLWLSPRLTMVTLINL 311
Query: 874 PLIGVSGYTQMKFMKGFSADAKMKYEEASQVANDAVGSIRTVASFCAEEKVMQLYKKKCE 933
PL+ ++ K + S + + +A+QVA +A+ +RTV SF AEE +K+ E
Sbjct: 312 PLVFLAEKVFGKRYQLLSEELQEAVAKANQVAEEALSGMRTVRSFAAEEGEASRFKEALE 371
Query: 934 APMKTGIRQGMVSGGGFGASFFLLFAFYAASFYAGARLVEDGKATFSDVFKVFFSLTMTA 993
++ R+ + G + L Y G +LV GK + ++ V F L
Sbjct: 372 ETLQLNKRKALAYAGYLWTTSVLGMLIQVLVLYYGGQLVLTGKVSSGNL--VSFLLYQEQ 429
Query: 994 IG--ISQSSSFSSDSNKAKSAAASIFAIIDRESKIDPSDESGTIL-EDVKGEIELHHVSF 1050
+G + S S +A A+ +F +DR+ I + GT+ +++G IE VSF
Sbjct: 430 LGEAVRVLSYVYSGMMQAVGASEKVFEYLDRKPNIPLT---GTLAPLNLEGLIEFQDVSF 486
Query: 1051 KYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQ 1110
YP+RPDV V + L + G+ VALVG SGSGKSTV +LLQ Y P G + LDGV +
Sbjct: 487 SYPNRPDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLV 546
Query: 1111 KLQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQ 1170
+ +L +Q+ LV QEPVLF+ ++R NIAYG D + EI AA++ ANAH FI
Sbjct: 547 QYDHHYLHRQVALVGQEPVLFSGSVRENIAYGL-TDTPDEEIMAAAKAANAHDFIMEFPN 605
|
[Transport and binding proteins, Other]. Length = 711 |
| >gnl|CDD|213212 cd03245, ABCC_bacteriocin_exporters, ATP-binding cassette domain of bacteriocin exporters, subfamily C | Back alignment and domain information |
|---|
Score = 232 bits (595), Expect = 6e-70
Identities = 94/221 (42%), Positives = 140/221 (63%), Gaps = 1/221 (0%)
Query: 382 GDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAG 441
G IE R+V FSYP + + S++I +G A++G+ GSGKST++ L+ Y P +G
Sbjct: 1 GRIEFRNVSFSYPNQEIPAL-DNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSG 59
Query: 442 EVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANA 501
VL+DG ++++ +R+ IG V Q+ LF G+++DNI G A E I A ELA
Sbjct: 60 SVLLDGTDIRQLDPADLRRNIGYVPQDVTLFYGTLRDNITLGAPLADDERILRAAELAGV 119
Query: 502 AKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVV 561
F++K P G+D +GE G LSGGQ+Q +A+ARA+L DP ILLLDE TSA+D SE+ +
Sbjct: 120 TDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPPILLLDEPTSAMDMNSEERL 179
Query: 562 QEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKG 602
+E L +++ ++T +I+ HR S + D I V+ G+IV G
Sbjct: 180 KERLRQLLGDKTLIIITHRPSLLDLVDRIIVMDSGRIVADG 220
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. Length = 220 |
| >gnl|CDD|163508 TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Score = 247 bits (634), Expect = 1e-69
Identities = 155/536 (28%), Positives = 244/536 (45%), Gaps = 97/536 (18%)
Query: 133 RQATRIRGLYLKTILRQDVAFFDNETNTGEVVGRMSGDTVLIQDAMGEKVGKFL--QLMA 190
+ A + +L ILR V FF + + G++ R+ + ++V +FL QL
Sbjct: 224 KLAVGMSARFLWHILRLPVRFFA-QRHAGDIASRVQ---------LNDQVAEFLSGQLAT 273
Query: 191 TFLGGFLIAFIKGWLLTLVMLSSIPLLAMSGGVMAIM-------ISKM----SSRGQGAY 239
T L ++ F L+ML P+L + G A + +S+ + R Q
Sbjct: 274 TALDAVMLVF-----YALLMLLYDPVLTLIGIAFAAINVLALQLVSRRRVDANRRLQQDA 328
Query: 240 AKAASVVEQTIGSIRTVASFTGEKQAMSN----YKKFLVTAYKSGVQEGLAAGIGLGMVM 295
K V + SI T+ + E S K L + GV + + +
Sbjct: 329 GKLTGVAISGLQSIETLKASGLESDFFSRWAGYQAKLLNAQQELGVLTQILGVLPTLLTS 388
Query: 296 LIVFCSYALSVWYGGKLILEEGYNGGQVVNVMVAVLTGSMSLGEASPCLSAFGAGQAAAF 355
L + AL + GG ++E G +++G L AF Q+
Sbjct: 389 L----NSALILVVGGLRVME-----------------GQLTIG----MLVAF---QSLMS 420
Query: 356 KMFETIN-------RKPEIDA---------------YDTKGKILDD-------IRGDIEL 386
E +N E++ + + + G +EL
Sbjct: 421 SFLEPVNNLVGFGGTLQELEGDLNRLDDVLRNPVDPLLEEEEAPAAGSEPSPRLSGYVEL 480
Query: 387 RDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLID 446
R++ F Y + + FS+++ G ALVG SGSGKST+ L+ Y P +GE+L D
Sbjct: 481 RNITFGY-SPLEPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEILFD 539
Query: 447 GINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFID 506
GI +E + + + +V Q+ LF G+++DN+ ++ A + A I
Sbjct: 540 GIPREEIPREVLANSVAMVDQDIFLFEGTVRDNLTLWDPTIPDADLVRACKDAAIHDVIT 599
Query: 507 KLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALD 566
P G D + E G LSGGQ+QR+ IARA++++P IL+LDEATSALD E+EK++ + L
Sbjct: 600 SRPGGYDAELAEGGANLSGGQRQRLEIARALVRNPSILILDEATSALDPETEKIIDDNLR 659
Query: 567 RIMVNR--TTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVEDPEGAYSQLIR 620
R R T +IVAHRLST+R+ D I V+ RGK+V++GTH +L GAY++LIR
Sbjct: 660 R----RGCTCIIVAHRLSTIRDCDEIIVLERGKVVQRGTHEELWAV-GGAYARLIR 710
|
This protein describes a multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHLM, Nitrile Hydratase Leader Microcin [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 710 |
| >gnl|CDD|131259 TIGR02204, MsbA_rel, ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Score = 238 bits (610), Expect = 1e-67
Identities = 127/411 (30%), Positives = 212/411 (51%), Gaps = 13/411 (3%)
Query: 765 LIYLALGAGSFLLSPAQSYFFAVAGNKLIQRIRSMCFEKVIHMEVSWFDEPEHSSGAIGA 824
L + L + A+ Y G +++ IR F +I + S+FD+ + SG + +
Sbjct: 62 AFLLVVALVLALGTAARFYLVTWLGERVVADIRRAVFAHLISLSPSFFDK--NRSGEVVS 119
Query: 825 RLSADAASVRALVGDALARIVQNISTAAAGLIIAFTASWQLALIILVMLPLIGVSGYTQM 884
RL+ D +++++G +L+ ++N GLI+ F S +L ++L+ +PL+ +
Sbjct: 120 RLTTDTTLLQSVIGSSLSMALRNALMCIGGLIMMFITSPKLTSLVLLAVPLVLLPILLFG 179
Query: 885 KFMKGFSADAKMKYEEASQVANDAVGSIRTVASFCAEEKVMQLYKKKCEAPMKTG----- 939
+ ++ S +++ + +A A + +G+IRTV +F E+ + E +
Sbjct: 180 RRVRKLSRESQDRIADAGSYAGETLGAIRTVQAFGHEDAERSRFGGAVEKAYEAARQRIR 239
Query: 940 IRQGMVSGGGFGASFFLLFAFYAASFYAGARLVEDGKATFSDVFKVFFSLTMTAIGISQS 999
R + + L+F + GA V GK + + + F M A I
Sbjct: 240 TRALLTAI-----VIVLVFGAIVGVLWVGAHDVIAGKMSAGTLGQFVFYAVMVAGSIGTL 294
Query: 1000 SSFSSDSNKAKSAAASIFAIIDRESKIDPSDESGTILEDVKGEIELHHVSFKYPSRPDVQ 1059
S + +A AA + ++ E I T+ ++GEIE V+F YP+RPD
Sbjct: 295 SEVWGELQRAAGAAERLIELLQAEPDIKAPAHPKTLPVPLRGEIEFEQVNFAYPARPDQP 354
Query: 1060 VFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQ 1119
LNL +R G+TVALVG SG+GKST+ LL RFYDP +G I LDGV++++L LR
Sbjct: 355 ALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDLRQLDPAELRA 414
Query: 1120 QMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQ 1170
+M LV Q+PVLF ++ NI YG+ DAT+ E++AA+ A+AH+FI +L +
Sbjct: 415 RMALVPQDPVLFAASVMENIRYGR-PDATDEEVEAAARAAHAHEFISALPE 464
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. Length = 576 |
| >gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Score = 235 bits (602), Expect = 1e-66
Identities = 136/471 (28%), Positives = 225/471 (47%), Gaps = 35/471 (7%)
Query: 708 RRLAYLNKPEIPVILAGTIAAMANGVILPIYGLLISSVIETFFKPPHELKKDSRFW---- 763
R +Y+ +P ++ +A + L+ +++ F + S W
Sbjct: 4 RLWSYV-RPYKAGLVLAGVAMILVAATESTLAALLKPLLDDGFG----GRDRSVLWWVPL 58
Query: 764 ALIYLAL--GAGSFLLSPAQSYFFAVAGNKLIQRIRSMCFEKVIHMEVSWFDEPEHSSGA 821
+I LA+ G SF+ +Y + NK+++ IR FEK++ + VS+FD +G
Sbjct: 59 VVIGLAVLRGICSFV----STYLLSWVSNKVVRDIRVRMFEKLLGLPVSFFDR--QPTGT 112
Query: 822 IGARLSADAASVRALVGDALARIVQNISTAAAGLIIAFTASWQLALIILVMLPLIGVSGY 881
+ +R++ D+ V + DA +V+ T I+ SWQL LI++VMLP++ +
Sbjct: 113 LLSRITFDSEQVASAATDAFIVLVRETLTVIGLFIVLLYYSWQLTLIVVVMLPVLSILMR 172
Query: 882 TQMKFMKGFSADAKMKYEEASQVANDAVGSIRTVASFCAEEKVMQLYKKKCEAPMKTGIR 941
K ++ S + + + + VA + + R V F + + + + ++
Sbjct: 173 RVSKRLRRISKEIQNSMGQVTTVAEETLQGYRVVKLFGGQAYETRRFDAVSNRNRRLAMK 232
Query: 942 QGMVSGGG-------FGASFFLLFAFYAASFYAGARLVEDGKATFSDVFKVFFSLTMTAI 994
M S G AS L + A F A A G T D ++
Sbjct: 233 --MTSAGSISSPITQLIASLALAVVLFIALFQAQA-----GSLTAGDFTAFITAMIALIR 285
Query: 995 GISQSSSFSSDSNKAKSAAASIFAIIDRESKIDPSDESGTILEDVKGEIELHHVSFKYPS 1054
+ ++ ++ + +AA S+F ++D D +E +G++E +V+F+YP
Sbjct: 286 PLKSLTNVNAPMQRGLAAAESLFTLLDSP---PEKDTGTRAIERARGDVEFRNVTFRYPG 342
Query: 1055 RPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQL 1114
R D ++L I G+TVALVG SGSGKST+V+L+ RFY+PD+G I LDG ++ L
Sbjct: 343 R-DRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYTL 401
Query: 1115 KWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFI 1165
LR+Q+ LVSQ+ VLFNDTI NIAYG+ A AEI+ A A A F+
Sbjct: 402 ASLRRQVALVSQDVVLFNDTIANNIAYGRTEQADRAEIERALAAAYAQDFV 452
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]. Length = 571 |
| >gnl|CDD|227321 COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 235 bits (601), Expect = 1e-66
Identities = 109/278 (39%), Positives = 173/278 (62%), Gaps = 4/278 (1%)
Query: 349 AGQAAAFKMFETINRKPEIDAYDTKGKILDDIRGDIELRDVYFSYPARPNEQIFSGFSIS 408
AG+AAA K+F + K ++ ++ +I L ++ F YP S +++
Sbjct: 286 AGEAAADKLFTLLESPVATPGSGEKAEVANEPPIEISLENLSFRYPDGK--PALSDLNLT 343
Query: 409 ISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQE 468
I +G ALVG SG+GKST+++L+ F P GE+ ++GI+L++ + RK+I VSQ
Sbjct: 344 IKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQISWVSQN 403
Query: 469 PVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQK 528
P LF G+I++NI + DA+ EEI A + A +F+ K P G+DT++GE G LSGGQ
Sbjct: 404 PYLFAGTIRENILLARPDASDEEIIAALDQAGLLEFVPK-PDGLDTVIGEGGAGLSGGQA 462
Query: 529 QRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNAD 588
QR+A+ARA+L +LLLDE T+ LDAE+E+++ +AL + +T +++ HRL +AD
Sbjct: 463 QRLALARALLSPASLLLLDEPTAHLDAETEQIILQALQELAKQKTVLVITHRLEDAADAD 522
Query: 589 MIAVIHRGKIVEKGTHSKLVEDPEGAYSQLIRLQEANK 626
I V+ G++VE+GTH +L E +G Y+ L++ QE +
Sbjct: 523 RIVVLDNGRLVEQGTHEELSEK-QGLYANLLKQQEGRR 559
|
Length = 559 |
| >gnl|CDD|130260 TIGR01192, chvA, glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Score = 233 bits (596), Expect = 8e-66
Identities = 112/244 (45%), Positives = 167/244 (68%), Gaps = 3/244 (1%)
Query: 377 LDDIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFY 436
L +++G +E R + F + + Q S +G T A+VG +G+GK+T+I+L++R Y
Sbjct: 328 LPNVKGAVEFRHITFEFAN--SSQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVY 385
Query: 437 DPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVAT 496
DP G++LIDGI++ + +RK I V Q+ LF SI++NI G++ AT EE+ A
Sbjct: 386 DPTVGQILIDGIDINTVTRESLRKSIATVFQDAGLFNRSIRENIRLGREGATDEEVYEAA 445
Query: 497 ELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAE 556
+ A A FI K G DTLVGE G +LSGG++QR+AIARAILK+ IL+LDEATSALD E
Sbjct: 446 KAAAAHDFILKRSNGYDTLVGERGNRLSGGERQRLAIARAILKNAPILVLDEATSALDVE 505
Query: 557 SEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVEDPEGAYS 616
+E V+ A+D + NRTT I+AHRLSTVRNAD++ + +G+++EKG+ +L++ +G +
Sbjct: 506 TEARVKNAIDALRKNRTTFIIAHRLSTVRNADLVLFLDQGRLIEKGSFQELIQK-DGRFY 564
Query: 617 QLIR 620
+L+R
Sbjct: 565 KLLR 568
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 585 |
| >gnl|CDD|234189 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Score = 234 bits (599), Expect = 4e-65
Identities = 138/431 (32%), Positives = 233/431 (54%), Gaps = 37/431 (8%)
Query: 196 FLIAFIKGWLLTLVMLSSIPLLAMSGGVMAIMISKMSSRG-QGAYAKAASVVEQTIGSIR 254
+IA I G L+ V L +IPL+ + G ++ +S+++ + + + A +VE ++ +
Sbjct: 278 LVIAIIGGPLV-WVPLVAIPLILLPGLLLQRPLSRLAEESMRESAQRNAVLVE-SLSGLE 335
Query: 255 TVASFTGEKQAMSNYKKFLVTAYKSGVQ-EGLAAGI--------GLGMVMLIVFCSYALS 305
T+ + E + +++ + +SG++ L+ L V ++V Y +S
Sbjct: 336 TIKALNAEGRFQRRWEQTVAALARSGLKSRFLSNLATNFAQFIQQLVSVAIVVVGVYLIS 395
Query: 306 VWYGGKLILEEGYNGGQVVNVMVAVLTGSM--SLGEASPCLSAFGAGQA-AAFKMFETIN 362
G+L + GG + VM L+G LG+ + L+ + QA A + + +
Sbjct: 396 D---GELTM-----GGLIACVM---LSGRALAPLGQLAGLLTRYQ--QAKTALQSLDELM 442
Query: 363 RKPEIDAYDTKGKILD--DIRGDIELRDVYFSYPARPNEQI--FSGFSISISSGTTAALV 418
+ P + L ++G+IE R+V F+YP ++ S++I G A++
Sbjct: 443 QLP--VERPEGTRFLHRPRLQGEIEFRNVSFAYP---GQETPALDNVSLTIRPGEKVAII 497
Query: 419 GQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKD 478
G+ GSGKST++ L+ Y P G VL+DG+++++ +R+ IG V Q+P LF G+++D
Sbjct: 498 GRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQIDPADLRRNIGYVPQDPRLFYGTLRD 557
Query: 479 NIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAIL 538
NIA G A EEI A ELA +F+ + P G+D +GE G LSGGQ+Q +A+ARA+L
Sbjct: 558 NIALGAPYADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQAVALARALL 617
Query: 539 KDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKI 598
+DP ILLLDE TSA+D SE+ ++ L R + +T V+V HR S + D I V+ G+I
Sbjct: 618 RDPPILLLDEPTSAMDNRSEERFKDRLKRWLAGKTLVLVTHRTSLLDLVDRIIVMDNGRI 677
Query: 599 VEKGTHSKLVE 609
V G +++E
Sbjct: 678 VADGPKDQVLE 688
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]. Length = 694 |
| >gnl|CDD|234033 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Score = 229 bits (587), Expect = 5e-65
Identities = 98/245 (40%), Positives = 135/245 (55%), Gaps = 4/245 (1%)
Query: 349 AGQAAAFKMFETINRKPEIDAYDTKGKILDDIRGDIELRDVYFSYPARPNEQIFSGFSIS 408
G AAA +F ++ P A +E V +YP R S +
Sbjct: 289 DGVAAAEALFAVLDAAPRPLAGKAPVTAAPAPS--LEFSGVSVAYPGRRP--ALRPVSFT 344
Query: 409 ISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQE 468
+ G ALVG SG+GKST+++L+ F DP G + ++G+ L + R +I V Q
Sbjct: 345 VPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADSWRDQIAWVPQH 404
Query: 469 PVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQK 528
P LF G+I +NI + DA+ EIR A E A +F+ LPQG+DT +GE G LSGGQ
Sbjct: 405 PFLFAGTIAENIRLARPDASDAEIREALERAGLDEFVAALPQGLDTPIGEGGAGLSGGQA 464
Query: 529 QRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNAD 588
QR+A+ARA L+D +LLLDE T+ LDAE+E V EAL + RT ++V HRL+ AD
Sbjct: 465 QRLALARAFLRDAPLLLLDEPTAHLDAETEAEVLEALRALAQGRTVLLVTHRLALAALAD 524
Query: 589 MIAVI 593
I V+
Sbjct: 525 RIVVL 529
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD. Length = 529 |
| >gnl|CDD|213216 cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins | Back alignment and domain information |
|---|
Score = 215 bits (550), Expect = 2e-63
Identities = 81/126 (64%), Positives = 98/126 (77%), Gaps = 1/126 (0%)
Query: 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHI 1102
IE +VSF+YPSRPDV + + L+L I GKTVALVG SG GKSTVVSLL+RFYDP +G I
Sbjct: 1 IEFKNVSFRYPSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEI 60
Query: 1103 TLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAH 1162
LDGV+I+ L L+WLR Q+GLVSQEPVLF+ TI NI YGK DAT+ E++ A++ AN H
Sbjct: 61 LLDGVDIRDLNLRWLRSQIGLVSQEPVLFDGTIAENIRYGK-PDATDEEVEEAAKKANIH 119
Query: 1163 KFICSL 1168
FI SL
Sbjct: 120 DFIMSL 125
|
MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. Length = 238 |
| >gnl|CDD|234357 TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 229 bits (585), Expect = 2e-63
Identities = 154/487 (31%), Positives = 242/487 (49%), Gaps = 32/487 (6%)
Query: 147 LRQDVAFFDNETNTGEVVGRMSGDTVLIQDAMGEKVGKFLQLMATFLGGFLIAFIKGWLL 206
LR V+FF + TG++ R G + + + G + L + L L+ F W L
Sbjct: 220 LRLPVSFFRQYS-TGDLASRAMGISQIRRILSGSTLTTLLSGIFALLNLGLM-FYYSWKL 277
Query: 207 TLVMLSSIPLLAMSGGVMAIMISKMSSRGQGAYAKAASVVEQTIGSI---RTVASFTGEK 263
LV ++ + V+ ++ + R K + + Q I I R + E
Sbjct: 278 ALVAVALALVAIAVTLVLGLLQVRKERRLLELSGKISGLTVQLINGISKLRVAGA---EN 334
Query: 264 QA----MSNYKKFLVTAYKSGVQEGLAAGIGLGMVMLIVFCSYALSVWYGGKLILEEGYN 319
+A + + + E L +L V S AL L+ G +
Sbjct: 335 RAFARWAKLFSRQRKLELSAQRIENLLTVFN---AVLPVLTSAAL-FAAAISLLGGAGLS 390
Query: 320 GGQVVNVMVAVLTGSMSLGEASPCLSAFGAGQAAAFKMFETINRKPEIDA---YDTKGKI 376
G + A + S ++ + S L + A ++E KP ++A D
Sbjct: 391 LGSFLAFNTAFGSFSGAVTQLSNTLISI----LAVIPLWERA--KPILEALPEVDEAKTD 444
Query: 377 LDDIRGDIELRDVYFSYPARPN-EQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERF 435
+ G IE+ V F Y RP+ I S+ I G A+VG SGSGKST++ L+ F
Sbjct: 445 PGKLSGAIEVDRVTFRY--RPDGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGF 502
Query: 436 YDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVA 495
P++G V DG +L +Q +R+++G+V Q L +GSI +NIA G T +E A
Sbjct: 503 ETPESGSVFYDGQDLAGLDVQAVRRQLGVVLQNGRLMSGSIFENIA-GGAPLTLDEAWEA 561
Query: 496 TELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDA 555
+A A+ I +P G+ T++ E G LSGGQ+QR+ IARA+++ PRILL DEATSALD
Sbjct: 562 ARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIARALVRKPRILLFDEATSALDN 621
Query: 556 ESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVEDPEGAY 615
++ +V E+L+R+ V R +++AHRLST+RNAD I V+ G++V++GT+ +L+ EG +
Sbjct: 622 RTQAIVSESLERLKVTR--IVIAHRLSTIRNADRIYVLDAGRVVQQGTYDELMAR-EGLF 678
Query: 616 SQLIRLQ 622
+QL R Q
Sbjct: 679 AQLARRQ 685
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal leader sequence cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, members of protein families related to nitrile hydratase alpha subunit or to nif11 have undergone paralogous family expansions, with members possessing a putative bacteriocin cleavage region ending with a classic Gly-Gly motif. Those sets of putative bacteriocins, members of this protein family and its partners TIGR03794 and TIGR03796, and cyclodehydratase/docking scaffold fusion proteins of thiazole/oxazole biosynthesis frequently show correlated species distribution and co-clustering within many of those genomes [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 686 |
| >gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Score = 228 bits (583), Expect = 5e-63
Identities = 165/576 (28%), Positives = 284/576 (49%), Gaps = 42/576 (7%)
Query: 60 LMIIGSIGAIGNGLCLPLMTLLFGDLINTFGDNQNNSETVDKVSKVAVKFVYLGIGSGIA 119
L++ I AI L + +I+T+ ++ + +++ + I I
Sbjct: 157 LIVNIVIAAIIVTLISIAGSYYLQKIIDTYIPHKMM----GTLGIISIGLIIAYIIQQIL 212
Query: 120 SFLQVTCWMITGERQATRIRGLYLKTILRQDVAFFDNETNTGEVVGRMSGDTVLIQDAMG 179
S++Q+ + G+R + I Y+K + ++FF TGE+V R + D I DA+
Sbjct: 213 SYIQIFLLNVLGQRLSIDIILSYIKHLFELPMSFFSTR-RTGEIVSRFT-DASSIIDALA 270
Query: 180 EKV-GKFLQLMATFLGGFLIAFIKGWLLTLVMLSSIPLLAMSGGVMAIMISKMSSRGQGA 238
+ FL + + G + + LL L+ L SIP+ A+ + +K++ A
Sbjct: 271 STILSLFLDMWILVIVGLFLVR-QNMLLFLLSLLSIPVYAVIIILFKRTFNKLNHDAMQA 329
Query: 239 YAKAASVVEQTIGSIRTVASFTGEKQA-------MSNY-KKFLVTAYKSGVQEGLAAGIG 290
A S + + + I T+ S T E + +Y K Q+ + A
Sbjct: 330 NAVLNSSIIEDLNGIETIKSLTSEAERYSKIDSEFGDYLNKSFKYQKADQGQQAIKAVTK 389
Query: 291 LGMVMLIVFCSYALSVWYGGKLILEEGYNGGQVV--NVMVAVLTGSM-SLGEASPCLSAF 347
L + ++I+ W G L++ GQ++ N +++ + ++ P L
Sbjct: 390 LILNVVIL--------WTGAYLVMRGKLTLGQLITFNALLSYFLTPLENIINLQPKL--- 438
Query: 348 GAGQAAAFKMFETINRKPEIDAYDTKGKILD---DIRGDIELRDVYFSYPARPNEQIFSG 404
QAA +N +D+ K ++ GDI + DV +SY I S
Sbjct: 439 ---QAARVA-NNRLNEVYLVDSEFINKKKRTELNNLNGDIVINDVSYSYGY--GSNILSD 492
Query: 405 FSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGL 464
S++I + +VG SGSGKST+ L+ F+ ++GE+L++G +LK+ +R+ I
Sbjct: 493 ISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKDIDRHTLRQFINY 552
Query: 465 VSQEPVLFTGSIKDNIAYG-KDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQL 523
+ QEP +F+GSI +N+ G K++ + +EI A E+A I+ +P G T + E G+ +
Sbjct: 553 LPQEPYIFSGSILENLLLGAKENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSI 612
Query: 524 SGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLST 583
SGGQKQRIA+ARA+L D ++L+LDE+TS LD +EK + L + ++T + VAHRLS
Sbjct: 613 SGGQKQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNLLN-LQDKTIIFVAHRLSV 671
Query: 584 VRNADMIAVIHRGKIVEKGTHSKLVEDPEGAYSQLI 619
+ +D I V+ GKI+E+G+H +L+ D G Y+ LI
Sbjct: 672 AKQSDKIIVLDHGKIIEQGSHDELL-DRNGFYASLI 706
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair, Transport and binding proteins, Other]. Length = 708 |
| >gnl|CDD|213211 cd03244, ABCC_MRP_domain2, ATP-binding cassette domain 2 of multidrug resistance-associated protein | Back alignment and domain information |
|---|
Score = 213 bits (544), Expect = 7e-63
Identities = 82/224 (36%), Positives = 144/224 (64%), Gaps = 6/224 (2%)
Query: 382 GDIELRDVYFSYPARPNEQ-IFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQA 440
GDIE ++V Y RPN + S SI G +VG++GSGKS+++ + R + +
Sbjct: 1 GDIEFKNVSLRY--RPNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSS 58
Query: 441 GEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIA-YGKDDATTEEIRVATELA 499
G +LIDG+++ + L +R +I ++ Q+PVLF+G+I+ N+ +G+ + EE+ A E
Sbjct: 59 GSILIDGVDISKIGLHDLRSRISIIPQDPVLFSGTIRSNLDPFGE--YSDEELWQALERV 116
Query: 500 NAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEK 559
+F++ LP G+DT+V E G LS GQ+Q + +ARA+L+ +IL+LDEAT+++D E++
Sbjct: 117 GLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSKILVLDEATASVDPETDA 176
Query: 560 VVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGT 603
++Q+ + + T + +AHRL T+ ++D I V+ +G++VE +
Sbjct: 177 LIQKTIREAFKDCTVLTIAHRLDTIIDSDRILVLDKGRVVEFDS 220
|
The ABC subfamily C is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 221 |
| >gnl|CDD|227320 COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 221 bits (566), Expect = 8e-62
Identities = 127/482 (26%), Positives = 235/482 (48%), Gaps = 43/482 (8%)
Query: 160 TGEVVGRMSGDTVLIQDAMGEKVGKFLQLMATFLGGFLIAFIKGWLLTLVMLSSIPLLAM 219
+G+++ R+ D + + +L+++A + ++ + L+ SIPL +
Sbjct: 114 SGDLLNRLVADVDALDNL-------YLRVIAPAVVALVLIAVVTIGLSFF---SIPLALL 163
Query: 220 SGGVMAIM------ISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQAMSNYKKF- 272
G ++ ++ + + R GA+ Q ++R+ FT Q + F
Sbjct: 164 LGLILLLLLLIIPTLFYRAGRKFGAHLA------QGRAALRS--QFTDWVQGQAELLIFG 215
Query: 273 ----LVTAYKSGVQEGLAAGIGL----GMVMLIVFCSYALSVWYGGKLILEEGYNGGQVV 324
TA ++ L A G+ I+ L V + + G
Sbjct: 216 AEDAYRTALEATEASWLKAQRKQARFTGLSDAILLLIAGLLVIGLLLWMAAQVGAGALAQ 275
Query: 325 NVMVAVLTGSMSLGEASPCLS--AF---GAGQAAAFKMFETINRKPEIDAYDTKGKILDD 379
L + EA L+ AF G A+A ++ + +++KPE+ +
Sbjct: 276 PGAALALLVIFAALEAFEPLAPGAFQHLGQVIASARRLNDILDQKPEVT---FPDEQTAT 332
Query: 380 IRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQ 439
+ELR+V F+YP + + F+++++ G A++G+SGSGKST++ L+ +DPQ
Sbjct: 333 TGQALELRNVSFTYPGQQT-KALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQ 391
Query: 440 AGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELA 499
G + ++G+ + Q +R+ I +++Q LF+G+++DN+ DA+ EE+ A +
Sbjct: 392 QGSITLNGVEIASLDEQALRETISVLTQRVHLFSGTLRDNLRLANPDASDEELWAALQQV 451
Query: 500 NAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEK 559
K ++ P G++T +GE G +LSGG+++R+A+ARA+L D + LLDE T LD +E+
Sbjct: 452 GLEKLLESAPDGLNTWLGEGGRRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITER 511
Query: 560 VVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVEDPEGAYSQLI 619
V L +T ++V HRL + D I V+ GKI+E+GTH++L+ + G Y +L
Sbjct: 512 QVLALLFEHAEGKTLLMVTHRLRGLERMDRIIVLDNGKIIEEGTHAELLAN-NGRYKRLY 570
Query: 620 RL 621
+L
Sbjct: 571 QL 572
|
Length = 573 |
| >gnl|CDD|236865 PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 217 bits (555), Expect = 3e-60
Identities = 95/269 (35%), Positives = 163/269 (60%), Gaps = 5/269 (1%)
Query: 352 AAAFKMFETINRKPEIDAYDTKGKILDDIRGDIELRDVYFSYPARPNEQIFSGFSISISS 411
A+A ++ E +KPE+ + T D + + L +V F+YP +P + G S+ I +
Sbjct: 309 ASARRINEITEQKPEVT-FPTTSTAAAD-QVSLTLNNVSFTYPDQPQ-PVLKGLSLQIKA 365
Query: 412 GTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVL 471
G AL+G++G GKST++ L+ R +DPQ GE+L++G + ++ +R+ I +VSQ L
Sbjct: 366 GEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIADYSEAALRQAISVVSQRVHL 425
Query: 472 FTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRI 531
F+ +++DN+ +A+ E + + K ++ +G++ +GE G QLSGG+++R+
Sbjct: 426 FSATLRDNLLLAAPNASDEALIEVLQQVGLEKLLED-DKGLNAWLGEGGRQLSGGEQRRL 484
Query: 532 AIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIA 591
IARA+L D +LLLDE T LDAE+E+ + E L N+T +++ HRL+ + D I
Sbjct: 485 GIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHAQNKTVLMITHRLTGLEQFDRIC 544
Query: 592 VIHRGKIVEKGTHSKLVEDPEGAYSQLIR 620
V+ G+I+E+GTH +L+ +G Y QL +
Sbjct: 545 VMDNGQIIEQGTHQELLAQ-QGRYYQLKQ 572
|
Length = 574 |
| >gnl|CDD|236870 PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 215 bits (550), Expect = 2e-59
Identities = 82/216 (37%), Positives = 139/216 (64%), Gaps = 4/216 (1%)
Query: 406 SISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQL-QWIRKKIGL 464
+ ++ +G ALVG SG+GK+++++ + F P G + I+GI L+E W RK +
Sbjct: 370 NFTLPAGQRIALVGPSGAGKTSLLNALLGFL-PYQGSLKINGIELRELDPESW-RKHLSW 427
Query: 465 VSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLS 524
V Q P L G+++DN+ G DA+ E+++ A E A ++F+ LPQG+DT +G+ LS
Sbjct: 428 VGQNPQLPHGTLRDNVLLGNPDASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAGLS 487
Query: 525 GGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTV 584
GQ QR+A+ARA+L+ ++LLLDE T++LDA SE++V +AL+ +TT++V H+L +
Sbjct: 488 VGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAASRRQTTLMVTHQLEDL 547
Query: 585 RNADMIAVIHRGKIVEKGTHSKLVEDPEGAYSQLIR 620
D I V+ G+IV++G +++L + G ++ L+
Sbjct: 548 AQWDQIWVMQDGQIVQQGDYAELSQAG-GLFATLLA 582
|
Length = 588 |
| >gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Score = 221 bits (563), Expect = 2e-58
Identities = 189/714 (26%), Positives = 327/714 (45%), Gaps = 105/714 (14%)
Query: 1 MNGESNSNEASASKSQEEVGKDSSMSGNEHDSE---------KGKQTEKTESVPFYKLFT 51
MNG S SAS + D + S N + + + + + ++F+
Sbjct: 763 MNGNSKHENESASNKKSCKMSDENASENNAGGKLPFLRNLFKRKPKAPNNLRIVYREIFS 822
Query: 52 FA-DSADTALMIIGSIGAIGNGLCLPLMTLLFGDLINTFGDNQNNSETVDKVSKVAVKFV 110
+ D AL I+ + GL P+ LL+ ++T D N +K S + +
Sbjct: 823 YKKDVTIIALSIL-----VAGGL-YPVFALLYAKYVSTLFDFANLEANSNKYS---LYIL 873
Query: 111 YLGIGSGIASFLQVTCWMITGERQATRIRGLYLKTILRQDVAFFDNETNT-GEVVGRMSG 169
+ I I+ L+ + GE+ ++ + IL Q+++FFD + + G + ++
Sbjct: 874 VIAIAMFISETLKNYYNNVIGEKVEKTMKRRLFENILYQEISFFDQDKHAPGLLSAHINR 933
Query: 170 DTVLIQDAMGEKVGKFLQLMATFLGGFLIAF----IKGWLLTLVMLSSIPLLAMSGGVMA 225
D L++ + + F + FL +++F I +LT + + A+ + A
Sbjct: 934 DVHLLKTGLVNNIVIFTHFIVLFLVSMVMSFYFCPIVAAVLTGTYFIFMRVFAIRARLTA 993
Query: 226 I--MISKMSSRGQGAYAKAAS---------VVEQTIGSIRTVASFTGEKQAMSNYKKFLV 274
+ K ++ +A + ++++ ++ TV + E + +K +
Sbjct: 994 NKDVEKKEINQPGTVFAYNSDDEIFKDPSFLIQEAFYNMNTVIIYGLEDYFCNLIEKAID 1053
Query: 275 TAYKSGVQEGLAAGIGLGMVMLIVFCSYALSVWYGGKLILEEGYNGGQVVNVMVAVLTGS 334
+ K ++ L + G + + W+G LI V + M ++ T
Sbjct: 1054 YSNKGQKRKTLVNSMLWGFSQSAQLFINSFAYWFGSFLIRRGTI---LVDDFMKSLFTFL 1110
Query: 335 MSLGEASPCLSAFGAGQAAAF---KMFETINRKPEIDAYDTKG---KILDDIRGDIELRD 388
+ A +S G + A K + I RK ID D G K +DI+G IE+ D
Sbjct: 1111 FTGSYAGKLMSLKGDSENAKLSFEKYYPLIIRKSNIDVRDNGGIRIKNKNDIKGKIEIMD 1170
Query: 389 VYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLI--- 445
V F Y +RPN I+ + S S T A+VG++GSGKSTV+SL+ RFYD + ++
Sbjct: 1171 VNFRYISRPNVPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKN 1230
Query: 446 ----DGINLKEFQ----------------------------------------------- 454
D N +++Q
Sbjct: 1231 EHTNDMTNEQDYQGDEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICDYN 1290
Query: 455 LQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDT 514
L+ +R +VSQEP+LF SI +NI +GK+DAT E+++ A + A +FI+ LP DT
Sbjct: 1291 LKDLRNLFSIVSQEPMLFNMSIYENIKFGKEDATREDVKRACKFAAIDEFIESLPNKYDT 1350
Query: 515 LVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRI--MVNR 572
VG +G LSGGQKQRIAIARA+L++P+ILLLDEATS+LD+ SEK++++ + I ++
Sbjct: 1351 NVGPYGKSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTIVDIKDKADK 1410
Query: 573 TTVIVAHRLSTVRNADMIAVIHR----GKIVE-KGTHSKLVEDPEGAYSQLIRL 621
T + +AHR+++++ +D I V + G V+ GTH +L+ +G Y + ++L
Sbjct: 1411 TIITIAHRIASIKRSDKIVVFNNPDRTGSFVQAHGTHEELLSVQDGVYKKYVKL 1464
|
Length = 1466 |
| >gnl|CDD|182732 PRK10789, PRK10789, putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Score = 210 bits (537), Expect = 4e-58
Identities = 152/527 (28%), Positives = 246/527 (46%), Gaps = 81/527 (15%)
Query: 135 ATRIRGLYLKTILRQDVAFFDNETNTGEVVGRMSGDTVLIQDAMGEKVGKFLQLMATFLG 194
A +R + + + RQ F+ TG+++ R + D + A GE V L L+ + +
Sbjct: 68 AVELREDFYRQLSRQHPEFYLRH-RTGDLMARATNDVDRVVFAAGEGV---LTLVDSLVM 123
Query: 195 GFLIAFIK----GWLLTLVMLSSIPLLAMSGGVMAIMISKMSSR-------GQGAYAKAA 243
G + + W LTL+ L +P VMAIMI + + Q A++
Sbjct: 124 GCAVLIVMSTQISWQLTLLALLPMP-------VMAIMIKRYGDQLHERFKLAQAAFSSLN 176
Query: 244 SVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYKSGVQEGLAAG----------IGLGM 293
++++ SIR + +F G + S F A +G + A I +GM
Sbjct: 177 DRTQESLTSIRMIKAF-GLEDRQSA--LFAADAEDTGKKNMRVARIDARFDPTIYIAIGM 233
Query: 294 VMLIVFCSYALSVWYGGKLILEEGYNGGQVVNVMVAVLTGSMSLGEASPCLSAFGA---- 349
L L++ G + V+ GS++LG+ + + G
Sbjct: 234 ANL-------LAIGGGSWM-----------------VVNGSLTLGQLTSFVMYLGLMIWP 269
Query: 350 -------------GQAAAFKMFETINRKPEIDAYDTKGKILDDIRGDIELRDVYFSYPAR 396
G AA ++ + P + + + + RG++++ F+YP
Sbjct: 270 MLALAWMFNIVERGSAAYSRIRAMLAEAPVVKDGS---EPVPEGRGELDVNIRQFTYPQT 326
Query: 397 PNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQ 456
+ + ++ G + G +GSGKST++SLI+R +D G++ I L + QL
Sbjct: 327 -DHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLD 385
Query: 457 WIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLV 516
R ++ +VSQ P LF+ ++ +NIA G+ DAT +EI LA+ I +LPQG DT V
Sbjct: 386 SWRSRLAVVSQTPFLFSDTVANNIALGRPDATQQEIEHVARLASVHDDILRLPQGYDTEV 445
Query: 517 GEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVI 576
GE G LSGGQKQRI+IARA+L + IL+LD+A SA+D +E + L + RT +I
Sbjct: 446 GERGVMLSGGQKQRISIARALLLNAEILILDDALSAVDGRTEHQILHNLRQWGEGRTVII 505
Query: 577 VAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVEDPEGAYSQLIRLQE 623
AHRLS + A I V+ G I ++G H +L + G Y + R Q+
Sbjct: 506 SAHRLSALTEASEILVMQHGHIAQRGNHDQLAQQS-GWYRDMYRYQQ 551
|
Length = 569 |
| >gnl|CDD|182733 PRK10790, PRK10790, putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Score = 208 bits (530), Expect = 6e-57
Identities = 97/254 (38%), Positives = 156/254 (61%), Gaps = 8/254 (3%)
Query: 378 DDIR----GDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIE 433
+D R G I++ +V F+Y R + + ++S+ S ALVG +GSGKST+ SL+
Sbjct: 331 NDDRPLQSGRIDIDNVSFAY--RDDNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLM 388
Query: 434 RFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIR 493
+Y GE+ +DG L +R+ + +V Q+PV+ + N+ G+D + E++
Sbjct: 389 GYYPLTEGEIRLDGRPLSSLSHSVLRQGVAMVQQDPVVLADTFLANVTLGRD-ISEEQVW 447
Query: 494 VATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSAL 553
A E A+ LP G+ T +GE G LS GQKQ +A+AR +++ P+IL+LDEAT+ +
Sbjct: 448 QALETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQLLALARVLVQTPQILILDEATANI 507
Query: 554 DAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVEDPEG 613
D+ +E+ +Q+AL + + T V++AHRLST+ AD I V+HRG+ VE+GTH +L+ +G
Sbjct: 508 DSGTEQAIQQALAAVREHTTLVVIAHRLSTIVEADTILVLHRGQAVEQGTHQQLLAA-QG 566
Query: 614 AYSQLIRLQEANKE 627
Y Q+ +LQ A +E
Sbjct: 567 RYWQMYQLQLAGEE 580
|
Length = 592 |
| >gnl|CDD|225183 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 205 bits (525), Expect = 2e-55
Identities = 115/407 (28%), Positives = 194/407 (47%), Gaps = 10/407 (2%)
Query: 764 ALIYLALGAGSFLLSPAQSYFFAVAGNKLIQRIRSMCFEKVIHMEVSWFDEPEHSSGAIG 823
A+ L LL ++Y A G +L + F ++ + +S+F + S G I
Sbjct: 197 AIGLLLAALFEALLRLLRTYLIAHLGKRLDLELSGRFFRHLLRLPLSYF--EKRSVGEII 254
Query: 824 ARLSADAASVRALVGDALARIVQNISTAAAGLIIAFTASWQLALIILVMLPLIGVSGYTQ 883
+R+ + +R + ++ ++ ++ A L + F SW+L LI+L +PL +
Sbjct: 255 SRVR-ELEQIREFLTGSILTLIIDLLFALIFLAVMFLYSWKLTLIVLAAIPLNVLITLIF 313
Query: 884 MKFMKGFSADAKMKYEEASQVANDAVGSIRTVASFCAEEKVMQLYKKKCEAPMKTGIRQG 943
++ + + E + + I TV + AE + + + + G +
Sbjct: 314 QPLLRRKTRKLIEESAEQQSFLVETIKGIETVKALAAEPRFRSQWDNRLAKQVNIGFKTE 373
Query: 944 -MVSGGGFGASFFLLFAFYAASFYAGARLVEDGKATFSDVFKVFFSLTMTAIG-ISQSSS 1001
+ S + GA LV +G+ T + F L I I++ S
Sbjct: 374 KLALILNTIKSLLQQL-SSVLILWFGAILVLEGELTLGQLV-AFNMLAGYFISPITRLSQ 431
Query: 1002 FSSDSNKAKSAAASIFAIIDRESKIDPSDESGTILEDVKGEIELHHVSFKYPSRPDVQVF 1061
+D +AK A + I+D + D++ L ++GEIE +VSF+Y +
Sbjct: 432 LWTDFQQAKVALERLGDILDTPPE-QEGDKTLIHLPKLQGEIEFENVSFRYGPDDPPVL- 489
Query: 1062 RDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQM 1121
DL+L+I G+ VA+VG SGSGKST++ LL Y P G I LDGV++ + L LR+Q+
Sbjct: 490 EDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLNDIDLASLRRQV 549
Query: 1122 GLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSL 1168
G V Q+P LF+ +IR NIA G +AT+ EI A+++A AH+FI +L
Sbjct: 550 GYVLQDPFLFSGSIRENIALGN-PEATDEEIIEAAQLAGAHEFIENL 595
|
Length = 709 |
| >gnl|CDD|183016 PRK11176, PRK11176, lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Score = 201 bits (513), Expect = 9e-55
Identities = 132/406 (32%), Positives = 203/406 (50%), Gaps = 40/406 (9%)
Query: 782 SYFFAVAGNKLIQRIRSMCFEKVIHMEVSWFDEPEHSSGAIGARLSADAASVRALVGDAL 841
SY + K++ +R F ++ M VS+FD+ S+G + +R++ D+ V + AL
Sbjct: 86 SYCISWVSGKVVMTMRRRLFGHMMGMPVSFFDK--QSTGTLLSRITYDSEQVASSSSGAL 143
Query: 842 ARIVQNISTAAAGLIIAFTASWQLALIILVMLPLIGVSGYTQMKFMKGFSADAKMKYEEA 901
+V+ ++ I+ F SWQL+LI++V+ P++ ++ K + S + + +
Sbjct: 144 ITVVREGASIIGLFIMMFYYSWQLSLILIVIAPIVSIAIRVVSKRFRNISKNMQNTMGQV 203
Query: 902 SQVANDAVGSIRTVASFCAEEKVMQLYKKKCEAPMKTGIRQGM--VSGGG-------FGA 952
+ A + + V F ++V K M+ +QGM VS A
Sbjct: 204 TTSAEQMLKGHKEVLIF-GGQEVETKRFDKVSNRMR---QQGMKMVSASSISDPIIQLIA 259
Query: 953 SFFLLFAFYAASFYAGARLVEDGKATFSDVFKVFF-------SLTMTAIGISQSSSFSSD 1005
S L F YAASF + + G T + VF SLT + ++
Sbjct: 260 SLALAFVLYAASFPSVMDTLTAG--TITVVFSSMIALMRPLKSLT----------NVNAQ 307
Query: 1006 SNKAKSAAASIFAIIDRESKIDPSDESGTI-LEDVKGEIELHHVSFKYPSRPDVQVFRDL 1064
+ +A ++FAI+D E + D G +E KG+IE +V+F YP + +V R++
Sbjct: 308 FQRGMAACQTLFAILDLEQEKD----EGKRVIERAKGDIEFRNVTFTYPGK-EVPALRNI 362
Query: 1065 NLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMGLV 1124
N KI AGKTVALVG SGSGKST+ +LL RFYD D G I LDG +++ L LR Q+ LV
Sbjct: 363 NFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHDLRDYTLASLRNQVALV 422
Query: 1125 SQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQ 1170
SQ LFNDTI NIAY + + +I+ A+ MA A FI +
Sbjct: 423 SQNVHLFNDTIANNIAYARTEQYSREQIEEAARMAYAMDFINKMDN 468
|
Length = 582 |
| >gnl|CDD|234041 TIGR02868, CydC, thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Score = 185 bits (471), Expect = 1e-49
Identities = 93/302 (30%), Positives = 156/302 (51%), Gaps = 13/302 (4%)
Query: 286 AAGIGLGMVMLIVFCSYALSVWYGGKLILEEGYNGGQVVNVMVAVLT-GSMSLGEA---- 340
A +G + +L + ++W GG G++ V +AVL ++ EA
Sbjct: 236 ATALGAALTLLAAGLAVLGALWAGG-----PAVADGRLAPVTLAVLVLLPLAAFEAFAAL 290
Query: 341 SPCLSAFGAGQAAAFKMFETINRKPEIDAYDTKG-KILDDIRGDIELRDVYFSYPARPNE 399
+AAA ++ E ++ + + + +ELRD+ YP
Sbjct: 291 PAAAQQLTRVRAAAERIVEVLDAAGPVAEGSAPAAGAVGLGKPTLELRDLSAGYP--GAP 348
Query: 400 QIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIR 459
+ G S+ + G A++G SGSGKST+++ + DP GEV +DG+ + +R
Sbjct: 349 PVLDGVSLDLPPGERVAILGPSGSGKSTLLATLAGLLDPLQGEVTLDGVPVSSLDQDEVR 408
Query: 460 KKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEH 519
+++ + +Q+ LF ++++N+ + DAT EE+ A E A ++ LP G+DT++GE
Sbjct: 409 RRVSVCAQDAHLFDTTVRENLRLARPDATDEELWAALERVGLADWLRALPDGLDTVLGEG 468
Query: 520 GTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAH 579
G +LSGG++QR+A+ARA+L D ILLLDE T LDAE+ + E L + RT V++ H
Sbjct: 469 GARLSGGERQRLALARALLADAPILLLDEPTEHLDAETADELLEDLLAALSGRTVVLITH 528
Query: 580 RL 581
L
Sbjct: 529 HL 530
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Length = 530 |
| >gnl|CDD|213218 cd03251, ABCC_MsbA, ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 174 bits (444), Expect = 2e-49
Identities = 66/128 (51%), Positives = 91/128 (71%), Gaps = 2/128 (1%)
Query: 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHI 1102
+E +V+F+YP V RD++L I AG+TVALVG SGSGKST+V+L+ RFYD D+G I
Sbjct: 1 VEFKNVTFRYPGDGP-PVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRI 59
Query: 1103 TLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAH 1162
+DG +++ L LR+Q+GLVSQ+ LFNDT+ NIAYG+ AT E++ A+ ANAH
Sbjct: 60 LIDGHDVRDYTLASLRRQIGLVSQDVFLFNDTVAENIAYGR-PGATREEVEEAARAANAH 118
Query: 1163 KFICSLQQ 1170
+FI L +
Sbjct: 119 EFIMELPE 126
|
MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 234 |
| >gnl|CDD|213227 cd03260, ABC_PstB_phosphate_transporter, ATP-binding cassette domain of the phosphate transport system | Back alignment and domain information |
|---|
Score = 172 bits (439), Expect = 9e-49
Identities = 89/241 (36%), Positives = 125/241 (51%), Gaps = 31/241 (12%)
Query: 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYD-----P 438
IELRD+ Y + S+ I G AL+G SG GKST++ L+ R D P
Sbjct: 1 IELRDLNVYYGDK---HALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAP 57
Query: 439 QAGEVLIDG--INLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYG------KDDATTE 490
GEVL+DG I + + +R+++G+V Q+P F GSI DN+AYG K +
Sbjct: 58 DEGEVLLDGKDIYDLDVDVLELRRRVGMVFQKPNPFPGSIYDNVAYGLRLHGIKLKEELD 117
Query: 491 EIRVATELANAA---KFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLD 547
E RV L AA + D+L H LSGGQ+QR+ +ARA+ +P +LLLD
Sbjct: 118 E-RVEEALRKAALWDEVKDRL----------HALGLSGGQQQRLCLARALANEPEVLLLD 166
Query: 548 EATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTV-RNADMIAVIHRGKIVEKGTHSK 606
E TSALD S ++E + + T VIV H + R AD A + G++VE G +
Sbjct: 167 EPTSALDPISTAKIEELIAELKKEYTIVIVTHNMQQAARVADRTAFLLNGRLVEFGPTEQ 226
Query: 607 L 607
+
Sbjct: 227 I 227
|
Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). Length = 227 |
| >gnl|CDD|216049 pfam00664, ABC_membrane, ABC transporter transmembrane region | Back alignment and domain information |
|---|
Score = 174 bits (442), Expect = 2e-48
Identities = 90/279 (32%), Positives = 148/279 (53%), Gaps = 12/279 (4%)
Query: 62 IIGSIGAIGNGLCLPLMTLLFGDLINTFGDNQNNSETVDKVSKVAVKFVYLGIGSGIASF 121
I+ I A L PL+ F D + ++ +S +++ + + +G
Sbjct: 5 ILLLILAGATALVFPLLLGRFLDSLIDGNGDERSS-------LISLAILLIAVGVLQGLL 57
Query: 122 LQVTCWMITGERQATRIRGLYLKTILRQDVAFFD---NETNTGEVVGRMSGDTVLIQDAM 178
LQ GER RIR + +LRQ + + + GE+ R++ D I+D +
Sbjct: 58 LQG--SFYLGERLGQRIRKRLFRALLRQILGLPMSFFDTNSVGELTSRLTNDVSKIRDGL 115
Query: 179 GEKVGKFLQLMATFLGGFLIAFIKGWLLTLVMLSSIPLLAMSGGVMAIMISKMSSRGQGA 238
G+K+G F Q +AT +GGF++ F GW LTLV+L+ +PLL + V+A + K++ + Q A
Sbjct: 116 GDKLGLFFQSLATVVGGFIVMFYYGWKLTLVLLAILPLLILLSAVLAKKLRKLNRKEQKA 175
Query: 239 YAKAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYKSGVQEGLAAGIGLGMVMLIV 298
YAKA SV E+++ IRTV +F E+ + Y K L A K+G+++ + AG+ G+ LI
Sbjct: 176 YAKAGSVAEESLSGIRTVKAFGREEYELERYDKALEDAEKAGIKKAITAGLSFGITQLIS 235
Query: 299 FCSYALSVWYGGKLILEEGYNGGQVVNVMVAVLTGSMSL 337
+ SYAL++W+G L++ G + G V + L S L
Sbjct: 236 YLSYALALWFGAYLVISGGLSVGTVFAFLSLGLQLSGPL 274
|
This family represents a unit of six transmembrane helices. Many members of the ABC transporter family (pfam00005) have two such regions. Length = 274 |
| >gnl|CDD|184214 PRK13657, PRK13657, cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 176 bits (449), Expect = 2e-46
Identities = 108/383 (28%), Positives = 183/383 (47%), Gaps = 42/383 (10%)
Query: 801 FEKVIHMEVSWFDEPEHSSGAIGARLSADAASVRALVGDALARIVQNISTAAAGLI---I 857
FE++I + ++W + S A+ L AL G L + ++++T A ++ +
Sbjct: 96 FERIIQLPLAWHSQ-RGSGRALHTLLRG----TDALFGLWLEFMREHLATLVALVVLLPL 150
Query: 858 AFTASWQLALIILVMLPLIGVSGYTQMKFMKGFSADAKMKYEEASQVANDAVGSIRTVAS 917
A +W+L+L+++V+ + + M+ K A + Y + +DA+G++ V S
Sbjct: 151 ALFMNWRLSLVLVVLGIVYTLITTLVMRKTKDGQAAVEEHYHDLFAHVSDAIGNVSVVQS 210
Query: 918 FC---AEEKVMQLYKKKC-EAPMKTGIRQGMVSGGGFGASFFLLFAFYAASFYAGARLVE 973
+ AE + ++ A M + S AS + A GA LV+
Sbjct: 211 YNRIEAETQALRDIADNLLAAQMPVLSWWALASVLNRAASTITMLAI----LVLGAALVQ 266
Query: 974 DGKATFSDVFKVFFSLTMTAIG-ISQSSSFSSDSNKAKSAAA----------SIFAIIDR 1022
G+ +V F IG + Q +F N+ AA ++ + D
Sbjct: 267 KGQLRVGEVV-AFVGFATLLIGRLDQVVAFI---NQVFMAAPKLEEFFEVEDAVPDVRDP 322
Query: 1023 ESKIDPSDESGTILEDVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGS 1082
ID L VKG +E VSF Y + Q D++ + + G+TVA+VG +G+
Sbjct: 323 PGAID--------LGRVKGAVEFDDVSFSYDNSR--QGVEDVSFEAKPGQTVAIVGPTGA 372
Query: 1083 GKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYG 1142
GKST+++LLQR +DP +G I +DG +I+ + LR+ + +V Q+ LFN +I NI G
Sbjct: 373 GKSTLINLLQRVFDPQSGRILIDGTDIRTVTRASLRRNIAVVFQDAGLFNRSIEDNIRVG 432
Query: 1143 KGGDATEAEIQAASEMANAHKFI 1165
+ DAT+ E++AA+E A AH FI
Sbjct: 433 R-PDATDEEMRAAAERAQAHDFI 454
|
Length = 588 |
| >gnl|CDD|213213 cd03246, ABCC_Protease_Secretion, ATP-binding cassette domain of PrtD, subfamily C | Back alignment and domain information |
|---|
Score = 157 bits (399), Expect = 4e-44
Identities = 67/216 (31%), Positives = 106/216 (49%), Gaps = 44/216 (20%)
Query: 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 443
+E+ +V F YP + S SI G + A++G SGSGKST+ LI P +G V
Sbjct: 1 LEVENVSFRYPGA-EPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRV 59
Query: 444 LIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAK 503
+DG ++ ++ + +G + Q+ LF+GSI +NI
Sbjct: 60 RLDGADISQWDPNELGDHVGYLPQDDELFSGSIAENI----------------------- 96
Query: 504 FIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQE 563
LSGGQ+QR+ +ARA+ +PRIL+LDE S LD E E+ + +
Sbjct: 97 -------------------LSGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQ 137
Query: 564 ALDRI-MVNRTTVIVAHRLSTVRNADMIAVIHRGKI 598
A+ + T +++AHR T+ +AD I V+ G++
Sbjct: 138 AIAALKAAGATRIVIAHRPETLASADRILVLEDGRV 173
|
This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA. Length = 173 |
| >gnl|CDD|200134 TIGR01842, type_I_sec_PrtD, type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Score = 167 bits (425), Expect = 1e-43
Identities = 83/224 (37%), Positives = 128/224 (57%), Gaps = 2/224 (0%)
Query: 381 RGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQA 440
G + + +V P + G S S+ +G A++G SGSGKST+ LI + P +
Sbjct: 314 EGHLSVENVTIV-PPGGKKPTLRGISFSLQAGEALAIIGPSGSGKSTLARLIVGIWPPTS 372
Query: 441 GEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELAN 500
G V +DG +LK++ + K IG + Q+ LF G++ +NIA ++A E+I A +LA
Sbjct: 373 GSVRLDGADLKQWDRETFGKHIGYLPQDVELFPGTVAENIARFGENADPEKIIEAAKLAG 432
Query: 501 AAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKV 560
+ I +LP G DT++G G LSGGQ+QRIA+ARA+ DP++++LDE S LD E E+
Sbjct: 433 VHELILRLPDGYDTVIGPGGATLSGGQRQRIALARALYGDPKLVVLDEPNSNLDEEGEQA 492
Query: 561 VQEALDRIMVNR-TTVIVAHRLSTVRNADMIAVIHRGKIVEKGT 603
+ A+ + T V++ HR S + D I V+ G+I G
Sbjct: 493 LANAIKALKARGITVVVITHRPSLLGCVDKILVLQDGRIARFGE 536
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 544 |
| >gnl|CDD|213214 cd03247, ABCC_cytochrome_bd, ATP-binding cassette domain of CydCD, subfamily C | Back alignment and domain information |
|---|
Score = 156 bits (396), Expect = 1e-43
Identities = 60/219 (27%), Positives = 112/219 (51%), Gaps = 41/219 (18%)
Query: 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 443
+ + +V FSYP + +Q+ S+ + G AL+G+SGSGKST++ L+ PQ GE+
Sbjct: 1 LSINNVSFSYPEQ-EQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEI 59
Query: 444 LIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAK 503
+DG+ + + + + I +++Q P LF ++++N+
Sbjct: 60 TLDGVPVSDLEKA-LSSLISVLNQRPYLFDTTLRNNL----------------------- 95
Query: 504 FIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQE 563
G + SGG++QR+A+AR +L+D I+LLDE T LD +E+ +
Sbjct: 96 ----------------GRRFSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLS 139
Query: 564 ALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKG 602
+ ++ ++T + + H L+ + + D I + GKI+ +G
Sbjct: 140 LIFEVLKDKTLIWITHHLTGIEHMDKILFLENGKIIMQG 178
|
The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. Length = 178 |
| >gnl|CDD|224058 COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 160 bits (408), Expect = 3e-43
Identities = 91/287 (31%), Positives = 144/287 (50%), Gaps = 41/287 (14%)
Query: 384 IELRDVYFSYPARPNEQI--FSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAG 441
IEL +V ++ + S+ I G ++G SG+GKST++ LI P +G
Sbjct: 2 IELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSG 61
Query: 442 EVLIDGIN---LKEFQLQWIRKKIGLVSQEPVLFTG-SIKDNIAY-----GKDDATTEEI 492
V +DG + L E +L+ +R+KIG++ Q L + ++ +N+A+ G A ++
Sbjct: 62 SVFVDGQDLTALSEAELRQLRQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIKQ- 120
Query: 493 RVAT--ELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEAT 550
RVA EL + D+ P QLSGGQKQR+AIARA+ +P+ILL DEAT
Sbjct: 121 RVAELLELVGLSDKADRYP-----------AQLSGGQKQRVAIARALANNPKILLCDEAT 169
Query: 551 SALDAESEKVVQEALDRIMVNR----TTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHS 605
SALD E+ + + E L I NR T V++ H + V+ D +AV+ +G++VE+GT S
Sbjct: 170 SALDPETTQSILELLKDI--NRELGLTIVLITHEMEVVKRICDRVAVLDQGRLVEEGTVS 227
Query: 606 KLVEDPEGAYSQLIRLQEANKESEQTIDGQRKSEISMESLRHSSHRM 652
++ +P+ +E E +E L +
Sbjct: 228 EVFANPK---------HAITQEFIGETLEIDLPEELLERLESGDGPL 265
|
Length = 339 |
| >gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug resistance protein-like transporters | Back alignment and domain information |
|---|
Score = 152 bits (388), Expect = 1e-42
Identities = 50/97 (51%), Positives = 69/97 (71%), Gaps = 1/97 (1%)
Query: 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHI 1102
IE +VSF YP RP V +D++L I+ G+ VA+VG SGSGKST++ LL R YDP +G I
Sbjct: 1 IEFKNVSFSYPGRP-KPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEI 59
Query: 1103 TLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANI 1139
+DGV+++ L L+ LR+ + V Q+P LF+ TIR NI
Sbjct: 60 LIDGVDLRDLDLESLRKNIAYVPQDPFLFSGTIRENI 96
|
The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 171 |
| >gnl|CDD|213192 cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 154 bits (391), Expect = 1e-42
Identities = 76/223 (34%), Positives = 116/223 (52%), Gaps = 22/223 (9%)
Query: 385 ELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVL 444
EL+++ FSYP S++I G +VG +GSGKST++ L+ P +GEVL
Sbjct: 1 ELKNLSFSYPDG-ARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVL 59
Query: 445 IDGINLKEFQLQWIRKKIGLVSQEP--VLFTGSIKDNIAYG------KDDATTEEIRVAT 496
+DG +L + L+ +R+K+GLV Q P F ++++ +A+G ++ E + A
Sbjct: 60 VDGKDLTKLSLKELRRKVGLVFQNPDDQFFGPTVEEEVAFGLENLGLPEEEIEERVEEAL 119
Query: 497 ELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAE 556
EL D+ P LSGGQKQR+AIA + DP ILLLDE T+ LD
Sbjct: 120 ELVGLEGLRDRSPF-----------TLSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPA 168
Query: 557 SEKVVQEALDRIMVNRTTVIVA-HRLSTVRN-ADMIAVIHRGK 597
+ + E L ++ T+I+ H L + AD + V+ GK
Sbjct: 169 GRRELLELLKKLKAEGKTIIIVTHDLDLLLELADRVIVLEDGK 211
|
Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 211 |
| >gnl|CDD|226969 COG4618, ArpD, ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Score = 163 bits (416), Expect = 2e-42
Identities = 84/228 (36%), Positives = 130/228 (57%), Gaps = 10/228 (4%)
Query: 376 ILDDIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERF 435
L +G + + + + P + + I G S ++ +G ++G SGSGKST+ L+
Sbjct: 327 PLPAPQGALSVERLTAAPPGQK-KPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGI 385
Query: 436 YDPQAGEVLIDGINLKEFQLQWIR----KKIGLVSQEPVLFTGSIKDNIAYGKDDATTEE 491
+ P +G V +DG +L+ QW R + IG + Q+ LF G+I +NIA ++A E+
Sbjct: 386 WPPTSGSVRLDGADLR----QWDREQLGRHIGYLPQDVELFDGTIAENIARFGEEADPEK 441
Query: 492 IRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATS 551
+ A LA + I +LPQG DT +GE G LSGGQ+QRIA+ARA+ DP +++LDE S
Sbjct: 442 VIEAARLAGVHELILRLPQGYDTRIGEGGATLSGGQRQRIALARALYGDPFLVVLDEPNS 501
Query: 552 ALDAESEKVVQEALDRIMVN-RTTVIVAHRLSTVRNADMIAVIHRGKI 598
LD+E E + A+ T V++AHR S + + D I V+ G+I
Sbjct: 502 NLDSEGEAALAAAILAAKARGGTVVVIAHRPSALASVDKILVLQDGRI 549
|
Length = 580 |
| >gnl|CDD|213269 cd03369, ABCC_NFT1, ATP-binding cassette domain 2 of NFT1, subfamily C | Back alignment and domain information |
|---|
Score = 153 bits (389), Expect = 2e-42
Identities = 71/223 (31%), Positives = 125/223 (56%), Gaps = 22/223 (9%)
Query: 382 GDIELRDVYFSYPARPN-EQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQA 440
G+IE+ ++ Y P+ + S + +G +VG++G+GKST+I + RF + +
Sbjct: 5 GEIEVENLSVRY--APDLPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEE 62
Query: 441 GEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELAN 500
G++ IDGI++ L+ +R + ++ Q+P LF+G+I+ N+ D+ + EEI A
Sbjct: 63 GKIEIDGIDISTIPLEDLRSSLTIIPQDPTLFSGTIRSNLDP-FDEYSDEEIYGALR--- 118
Query: 501 AAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKV 560
V E G LS GQ+Q + +ARA+LK PR+L+LDEAT+++D ++ +
Sbjct: 119 ---------------VSEGGLNLSQGQRQLLCLARALLKRPRVLVLDEATASIDYATDAL 163
Query: 561 VQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGT 603
+Q+ + N T + +AHRL T+ + D I V+ G++ E
Sbjct: 164 IQKTIREEFTNSTILTIAHRLRTIIDYDKILVMDAGEVKEYDH 206
|
Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (multidrug resistance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. Length = 207 |
| >gnl|CDD|213228 cd03261, ABC_Org_Solvent_Resistant, ATP-binding cassette transport system involved in resistant to organic solvents | Back alignment and domain information |
|---|
Score = 152 bits (386), Expect = 1e-41
Identities = 77/234 (32%), Positives = 120/234 (51%), Gaps = 28/234 (11%)
Query: 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 443
IELR + S+ R + G + + G A++G SGSGKST++ LI P +GEV
Sbjct: 1 IELRGLTKSFGGR---TVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEV 57
Query: 444 LIDGIN---LKEFQLQWIRKKIGLVSQEPVLFTG-SIKDNIAY-----GKDDATTEEIRV 494
LIDG + L E +L +R+++G++ Q LF ++ +N+A+ + V
Sbjct: 58 LIDGEDISGLSEAELYRLRRRMGMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIV 117
Query: 495 AT--ELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSA 552
E D P +LSGG K+R+A+ARA+ DP +LL DE T+
Sbjct: 118 LEKLEAVGLRGAEDLYP-----------AELSGGMKKRVALARALALDPELLLYDEPTAG 166
Query: 553 LDAESEKVVQEALDRI--MVNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGT 603
LD + V+ + + + + T+++V H L T AD IAV++ GKIV +GT
Sbjct: 167 LDPIASGVIDDLIRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDGKIVAEGT 220
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|213220 cd03253, ABCC_ATM1_transporter, ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C | Back alignment and domain information |
|---|
Score = 152 bits (386), Expect = 2e-41
Identities = 59/126 (46%), Positives = 82/126 (65%), Gaps = 3/126 (2%)
Query: 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHI 1102
IE +V+F Y P V +D++ I AGK VA+VG SGSGKST++ LL RFYD +G I
Sbjct: 1 IEFENVTFAYD--PGRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSI 58
Query: 1103 TLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAH 1162
+DG +I+++ L LR+ +G+V Q+ VLFNDTI NI YG+ DAT+ E+ A++ A H
Sbjct: 59 LIDGQDIREVTLDSLRRAIGVVPQDTVLFNDTIGYNIRYGR-PDATDEEVIEAAKAAQIH 117
Query: 1163 KFICSL 1168
I
Sbjct: 118 DKIMRF 123
|
ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 236 |
| >gnl|CDD|213225 cd03258, ABC_MetN_methionine_transporter, ATP-binding cassette domain of methionine transporter | Back alignment and domain information |
|---|
Score = 151 bits (384), Expect = 2e-41
Identities = 83/246 (33%), Positives = 130/246 (52%), Gaps = 31/246 (12%)
Query: 384 IELRDVYFSYPARPNE-QIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGE 442
IEL++V + + S+S+ G ++G+SG+GKST+I I P +G
Sbjct: 2 IELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGS 61
Query: 443 VLIDGIN---LKEFQLQWIRKKIGLVSQEPVLFTG-SIKDNIAY-----GKDDATTEEIR 493
VL+DG + L +L+ R++IG++ Q L + ++ +N+A G A EE R
Sbjct: 62 VLVDGTDLTLLSGKELRKARRRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIEE-R 120
Query: 494 VAT--ELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATS 551
V EL D P QLSGGQKQR+ IARA+ +P++LL DEATS
Sbjct: 121 VLELLELVGLEDKADAYP-----------AQLSGGQKQRVGIARALANNPKVLLCDEATS 169
Query: 552 ALDAESEKVVQEALDRIMVNR----TTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSK 606
ALD E+ + + L I NR T V++ H + V+ D +AV+ +G++VE+GT +
Sbjct: 170 ALDPETTQSILALLRDI--NRELGLTIVLITHEMEVVKRICDRVAVMEKGEVVEEGTVEE 227
Query: 607 LVEDPE 612
+ +P+
Sbjct: 228 VFANPQ 233
|
MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 233 |
| >gnl|CDD|213224 cd03257, ABC_NikE_OppD_transporters, ATP-binding cassette domain of nickel/oligopeptides specific transporters | Back alignment and domain information |
|---|
Score = 150 bits (381), Expect = 6e-41
Identities = 74/240 (30%), Positives = 118/240 (49%), Gaps = 34/240 (14%)
Query: 384 IELRDVYFSYPARPNE-QIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGE 442
+E++++ S+P + S SI G T LVG+SGSGKST+ I P +G
Sbjct: 2 LEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGS 61
Query: 443 VLIDG---INLKEFQLQWIRKKIGLVSQEPV-----LFTGSIKDNIA-----YGKDDATT 489
++ DG + L + RK+I +V Q+P+ T I + IA +GK
Sbjct: 62 IIFDGKDLLKLSRRLRKIRRKEIQMVFQDPMSSLNPRMT--IGEQIAEPLRIHGKLSKKE 119
Query: 490 EEIRVATELA----NAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILL 545
L + +++ P +LSGGQ+QR+AIARA+ +P++L+
Sbjct: 120 ARKEAVLLLLVGVGLPEEVLNRYPH-----------ELSGGQRQRVAIARALALNPKLLI 168
Query: 546 LDEATSALDAESEKVVQEALDRI--MVNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKG 602
DE TSALD + + + L ++ + T + + H L V AD +AV++ GKIVE+G
Sbjct: 169 ADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLGVVAKIADRVAVMYAGKIVEEG 228
|
The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. Length = 228 |
| >gnl|CDD|216049 pfam00664, ABC_membrane, ABC transporter transmembrane region | Back alignment and domain information |
|---|
Score = 151 bits (384), Expect = 8e-41
Identities = 70/275 (25%), Positives = 134/275 (48%), Gaps = 3/275 (1%)
Query: 721 ILAGTIAAMANGVILPIYGLLISSVIETFFKPPHELKKDSRFWALIYLALGAGSFLLSPA 780
+L + + G ++ LL+ +++ + + A++ +A+G LL
Sbjct: 1 LLIAILLLILAGATALVFPLLLGRFLDSLIDGNGDERSSLISLAILLIAVGVLQGLLLQG 60
Query: 781 QSYFFAVAGNKLIQRIRSMCFEKVIHMEVSWFDEPEHSSGAIGARLSADAASVRALVGDA 840
Y G ++ +R+ +++ + +S+FD +S G + +RL+ D + +R +GD
Sbjct: 61 SFYLGERLGQRIRKRLFRALLRQILGLPMSFFDT--NSVGELTSRLTNDVSKIRDGLGDK 118
Query: 841 LARIVQNISTAAAGLIIAFTASWQLALIILVMLPLIGVSGYTQMKFMKGFSADAKMKYEE 900
L Q+++T G I+ F W+L L++L +LPL+ + K ++ + + Y +
Sbjct: 119 LGLFFQSLATVVGGFIVMFYYGWKLTLVLLAILPLLILLSAVLAKKLRKLNRKEQKAYAK 178
Query: 901 ASQVANDAVGSIRTVASFCAEEKVMQLYKKKCEAPMKTGIRQGMVSGGGFGASFFLLFAF 960
A VA +++ IRTV +F EE ++ Y K E K GI++ + +G FG + + +
Sbjct: 179 AGSVAEESLSGIRTVKAFGREEYELERYDKALEDAEKAGIKKAITAGLSFGITQLISYLS 238
Query: 961 YAASFYAGARLVEDGKATFSDVFKVFFSLTMTAIG 995
YA + + GA LV G + VF F SL + G
Sbjct: 239 YALALWFGAYLVISGGLSVGTVF-AFLSLGLQLSG 272
|
This family represents a unit of six transmembrane helices. Many members of the ABC transporter family (pfam00005) have two such regions. Length = 274 |
| >gnl|CDD|224042 COG1117, PstB, ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 149 bits (380), Expect = 2e-40
Identities = 84/254 (33%), Positives = 126/254 (49%), Gaps = 32/254 (12%)
Query: 377 LDDIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFY 436
IE+RD+ Y ++ ++ I AL+G SG GKST++ + R
Sbjct: 1 ETMKIPAIEVRDLNLYYG---DKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMN 57
Query: 437 DP-----QAGEVLIDGINL--KEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYG-----K 484
D GEVL+DG N+ + + +R+++G+V Q+P F SI DN+AYG
Sbjct: 58 DLIPGARVEGEVLLDGKNIYDPKVDVVELRRRVGMVFQKPNPFPMSIYDNVAYGLRLHGI 117
Query: 485 DDATTEEIRVATELANAA-----KFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILK 539
D +EI V + L AA K D+L + LSGGQ+QR+ IARA+
Sbjct: 118 KDKELDEI-VESSLKKAALWDEVK--DRL--------HKSALGLSGGQQQRLCIARALAV 166
Query: 540 DPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTV-RNADMIAVIHRGKI 598
P +LL+DE TSALD S ++E + + T VIV H + R +D A + G++
Sbjct: 167 KPEVLLMDEPTSALDPISTLKIEELITELKKKYTIVIVTHNMQQAARVSDYTAFFYLGEL 226
Query: 599 VEKGTHSKLVEDPE 612
VE G K+ +P+
Sbjct: 227 VEFGPTDKIFTNPK 240
|
Length = 253 |
| >gnl|CDD|213221 cd03254, ABCC_Glucan_exporter_like, ATP-binding cassette domain of glucan transporter and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 147 bits (373), Expect = 6e-40
Identities = 56/128 (43%), Positives = 84/128 (65%), Gaps = 3/128 (2%)
Query: 1041 GEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAG 1100
GEIE +V+F Y V +D+N I+ G+TVA+VG +G+GK+T+++LL RFYDP G
Sbjct: 1 GEIEFENVNFSY--DEKKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKG 58
Query: 1101 HITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMAN 1160
I +DG++I+ + K LR +G+V Q+ LF+ TI NI G+ +AT+ E+ A++ A
Sbjct: 59 QILIDGIDIRDISRKSLRSMIGVVLQDTFLFSGTIMENIRLGR-PNATDEEVIEAAKEAG 117
Query: 1161 AHKFICSL 1168
AH FI L
Sbjct: 118 AHDFIMKL 125
|
Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 229 |
| >gnl|CDD|213215 cd03248, ABCC_TAP, ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C | Back alignment and domain information |
|---|
Score = 147 bits (372), Expect = 8e-40
Identities = 58/133 (43%), Positives = 86/133 (64%), Gaps = 1/133 (0%)
Query: 1038 DVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDP 1097
+KG ++ +V+F YP+RPD V +D++ + G+ ALVG SGSGKSTVV+LL+ FY P
Sbjct: 7 HLKGIVKFQNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQP 66
Query: 1098 DAGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASE 1157
G + LDG I + + K+L ++ LV QEPVLF +++ NIAYG + E ++ A++
Sbjct: 67 QGGQVLLDGKPISQYEHKYLHSKVSLVGQEPVLFARSLQDNIAYGLQSCSFE-CVKEAAQ 125
Query: 1158 MANAHKFICSLQQ 1170
A+AH FI L
Sbjct: 126 KAHAHSFISELAS 138
|
TAP (Transporter Associated with Antigen Processing) is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. Length = 226 |
| >gnl|CDD|213226 cd03259, ABC_Carb_Solutes_like, ATP-binding cassette domain of the carbohydrate and solute transporters-like | Back alignment and domain information |
|---|
Score = 146 bits (370), Expect = 1e-39
Identities = 75/229 (32%), Positives = 122/229 (53%), Gaps = 26/229 (11%)
Query: 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 443
+EL+ + +Y + + S+++ G AL+G SG GK+T++ LI P +GE+
Sbjct: 1 LELKGLSKTYG---SVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEI 57
Query: 444 LIDGINLKEFQLQWIRKKIGLVSQEPVLFTG-SIKDNIAYG----KDDATTEEIRV--AT 496
LIDG ++ + R+ IG+V Q+ LF ++ +NIA+G RV
Sbjct: 58 LIDGRDV--TGVPPERRNIGMVFQDYALFPHLTVAENIAFGLKLRGVPKAEIRARVRELL 115
Query: 497 ELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAE 556
EL +++ P +LSGGQ+QR+A+ARA+ ++P +LLLDE SALDA+
Sbjct: 116 ELVGLEGLLNRYP-----------HELSGGQQQRVALARALAREPSLLLLDEPLSALDAK 164
Query: 557 SEKVVQEALDRIMVNR--TTVIVAHRLS-TVRNADMIAVIHRGKIVEKG 602
+ ++E L + TT+ V H + AD IAV++ G+IV+ G
Sbjct: 165 LREELREELKELQRELGITTIYVTHDQEEALALADRIAVMNEGRIVQVG 213
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 213 |
| >gnl|CDD|224047 COG1122, CbiO, ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 145 bits (369), Expect = 3e-39
Identities = 80/241 (33%), Positives = 123/241 (51%), Gaps = 25/241 (10%)
Query: 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 443
IE ++ F YP + S+ I G L+G +GSGKST++ L+ P +GEV
Sbjct: 4 IEAENLSFRYP--GRKAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEV 61
Query: 444 LIDGINLKEFQLQW-IRKKIGLVSQEPV--LFTGSIKDNIAYG------KDDATTEEIRV 494
L+DG++ + +R+K+GLV Q P LF +++D +A+G + E +
Sbjct: 62 LVDGLDTSSEKSLLELRQKVGLVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIEERVAE 121
Query: 495 ATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALD 554
A EL + +D+ P LSGGQKQR+AIA + P ILLLDE T+ LD
Sbjct: 122 ALELVGLEELLDRPPF-----------NLSGGQKQRVAIAGVLAMGPEILLLDEPTAGLD 170
Query: 555 AESEKVVQEALDRIM--VNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVEDP 611
+ + + E L ++ +T +IV H L V AD + V+ GKI+ G +++ D
Sbjct: 171 PKGRRELLELLKKLKEEGGKTIIIVTHDLELVLEYADRVVVLDDGKILADGDPAEIFNDA 230
Query: 612 E 612
E
Sbjct: 231 E 231
|
Length = 235 |
| >gnl|CDD|237648 PRK14250, PRK14250, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 144 bits (365), Expect = 9e-39
Identities = 82/261 (31%), Positives = 136/261 (52%), Gaps = 26/261 (9%)
Query: 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGE 442
+IE ++V +S ++I S+ G +VG SG+GKST+I LI R DP G
Sbjct: 3 EIEFKEVSYS---SFGKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGS 59
Query: 443 VLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAA 502
+LIDG+++K + +R+KIG+V Q+P LF G++KDNI YG + + V L+
Sbjct: 60 ILIDGVDIKTIDVIDLRRKIGMVFQQPHLFEGTVKDNIEYGPMLKGEKNVDVEYYLSIVG 119
Query: 503 KFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQ 562
+ + + LSGG+ QR++IAR + +P +LLLDE TSALD S ++++
Sbjct: 120 LNKEYATRDVK--------NLSGGEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEIIE 171
Query: 563 EALDRIM--VNRTTVIVAHRLSTV-RNADMIAVIHRGKIVEKGTHSKLVEDPEGAYSQLI 619
E + ++ +N T + + H + R D A +++G +VE +P+ ++L
Sbjct: 172 ELIVKLKNKMNLTVIWITHNMEQAKRIGDYTAFLNKGILVEYAKTYDFFTNPQNEVTKLF 231
Query: 620 RLQEANKESEQTIDGQRKSEI 640
I G+ K E+
Sbjct: 232 ------------IQGKLKEEV 240
|
Length = 241 |
| >gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding protein-dependent transport systems | Back alignment and domain information |
|---|
Score = 141 bits (359), Expect = 1e-38
Identities = 73/220 (33%), Positives = 111/220 (50%), Gaps = 48/220 (21%)
Query: 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 443
+EL++V Y + + + S++I +G AL+G SGSGKST++ I +P +G +
Sbjct: 1 LELKNVSKRYG---QKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSI 57
Query: 444 LIDGINL--KEFQLQWIRKKIGLVSQEPVLFTG-SIKDNIAYGKDDATTEEIRVATELAN 500
LIDG +L E +L +R++IG+V Q+ LF ++ +NIA G
Sbjct: 58 LIDGEDLTDLEDELPPLRRRIGMVFQDFALFPHLTVLENIALG----------------- 100
Query: 501 AAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKV 560
LSGGQ+QR+A+ARA+ DP +LLLDE TSALD + +
Sbjct: 101 ----------------------LSGGQQQRVALARALAMDPDVLLLDEPTSALDPITRRE 138
Query: 561 VQEALDRI--MVNRTTVIVAHRLSTVRN-ADMIAVIHRGK 597
V+ L + + T V+V H L AD + V+ GK
Sbjct: 139 VRALLKSLQAQLGITVVLVTHDLDEAARLADRVVVLRDGK 178
|
This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 178 |
| >gnl|CDD|213217 cd03250, ABCC_MRP_domain1, ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C | Back alignment and domain information |
|---|
Score = 142 bits (361), Expect = 1e-38
Identities = 73/224 (32%), Positives = 114/224 (50%), Gaps = 30/224 (13%)
Query: 384 IELRDVYFSYPARPNEQ--IFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAG 441
I + D F++ + E ++ + G A+VG GSGKS+++S + G
Sbjct: 1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSAL-------LG 53
Query: 442 EV-LIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGK--DDATTEEIRVATEL 498
E+ + G + I VSQEP + G+I++NI +GK D+ E++ A L
Sbjct: 54 ELEKLSG------SVSVP-GSIAYVSQEPWIQNGTIRENILFGKPFDEERYEKVIKACAL 106
Query: 499 ANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAES- 557
++ LP G T +GE G LSGGQKQRI++ARA+ D I LLD+ SA+DA
Sbjct: 107 E---PDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDADIYLLDDPLSAVDAHVG 163
Query: 558 ----EKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGK 597
E + L + N+T ++V H+L + +AD I V+ G+
Sbjct: 164 RHIFENCILGLL---LNNKTRILVTHQLQLLPHADQIVVLDNGR 204
|
This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 204 |
| >gnl|CDD|213260 cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of the nitrate and sulfonate transporters | Back alignment and domain information |
|---|
Score = 142 bits (361), Expect = 2e-38
Identities = 76/230 (33%), Positives = 110/230 (47%), Gaps = 29/230 (12%)
Query: 384 IELRDVYFSYPARPNE-QIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGE 442
+E+R+V +Y S+S+ G ALVG SG GKST++ +I P +GE
Sbjct: 1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGE 60
Query: 443 VLIDGINLKEFQLQWIRKKIGLVSQEPVLFT-GSIKDNIAYG---KDDATTEEIRVATEL 498
VL+DG + G V Q+ L ++ DN+A G + E A EL
Sbjct: 61 VLVDGEPVTG-----PGPDRGYVFQQDALLPWLTVLDNVALGLELQGVPKAEARERAEEL 115
Query: 499 ANA---AKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDA 555
+ F + P QLSGG +QR+A+ARA+ DP +LLLDE SALDA
Sbjct: 116 LELVGLSGFENAYPH-----------QLSGGMRQRVALARALAVDPDVLLLDEPFSALDA 164
Query: 556 ESEKVVQEALDRIMV--NRTTVIVAHRLS-TVRNADMIAVI--HRGKIVE 600
+ + +QE L I +T ++V H + V AD + V+ G+IV
Sbjct: 165 LTREQLQEELLDIWRETGKTVLLVTHDIDEAVFLADRVVVLSARPGRIVA 214
|
NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|226361 COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 146 bits (371), Expect = 3e-38
Identities = 80/255 (31%), Positives = 130/255 (50%), Gaps = 38/255 (14%)
Query: 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 443
+E+R+V S+ + S+ I G L+G SG GK+T++ +I F P +GE+
Sbjct: 6 LEIRNVSKSFG---DFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEI 62
Query: 444 LIDGINLKEFQLQWIRKKIGLVSQEPVLF-TGSIKDNIAYG-----KDDATTEEIRV--A 495
L+DG ++ + ++ IG+V Q LF ++++N+A+G K + RV A
Sbjct: 63 LLDGEDI--TDVPPEKRPIGMVFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEA 120
Query: 496 TELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDA 555
EL F D+ P QLSGGQ+QR+A+ARA++ +P++LLLDE SALDA
Sbjct: 121 LELVGLEGFADRKP-----------HQLSGGQQQRVALARALVPEPKVLLLDEPLSALDA 169
Query: 556 ESEKVVQEALDRIMVNR--TTVIVAHRLS---TVRNADMIAVIHRGKIVEKGTHSKLVED 610
+ + +++ L + T V V H + +D IAV++ G+I + GT
Sbjct: 170 KLREQMRKELKELQRELGITFVYVTHDQEEALAM--SDRIAVMNDGRIEQVGT------- 220
Query: 611 PEGAYSQLIRLQEAN 625
PE Y + A+
Sbjct: 221 PEEIYERPATRFVAD 235
|
Length = 352 |
| >gnl|CDD|234189 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Score = 152 bits (387), Expect = 4e-38
Identities = 115/414 (27%), Positives = 196/414 (47%), Gaps = 28/414 (6%)
Query: 765 LIYLALGAG-----SFLLSPAQSYFFAVAGNKLIQRIRSMCFEKVIHMEVSWFDEPEHSS 819
L LA+G F+L +SYF VAG K + + FE+V+ + + P S
Sbjct: 186 LWVLAIGVALAIVFDFVLKTLRSYFLDVAGKKADLILSAKLFERVLGLRME--ARPA-SV 242
Query: 820 GAIGARLSADAASVRALVGDA-LARIVQNISTAAAGLIIAFTASWQLALIILVMLPLIGV 878
G+ +L + SVR A L ++ L+IA L + LV +PLI +
Sbjct: 243 GSFANQLR-EFESVRDFFTSATLTALIDLPFALLFLLVIAIIG-GPLVWVPLVAIPLILL 300
Query: 879 SGYTQMKFMKG-FSADAKMKYEEASQ---VANDAVGSIRTVASFCAEEKVMQLYKKKCEA 934
G ++ S A+ E++Q V +++ + T+ + AE + + +++ A
Sbjct: 301 PGL----LLQRPLSRLAEESMRESAQRNAVLVESLSGLETIKALNAEGRFQRRWEQTVAA 356
Query: 935 PMKTGIRQGMVSGGGFGASFFLLFAFYAASFYAGARLVEDGKATFSDVFKVFFSLTMTAI 994
++G++ +S + F+ A G L+ DG+ T + L+ A+
Sbjct: 357 LARSGLKSRFLSNLATNFAQFIQQLVSVAIVVVGVYLISDGELTMGGLIACVM-LSGRAL 415
Query: 995 G-ISQSSSFSSDSNKAKSAAASIFAIIDRESKIDPSDESGTIL--EDVKGEIELHHVSFK 1051
+ Q + + +AK+A S+ ++ + E L ++GEIE +VSF
Sbjct: 416 APLGQLAGLLTRYQQAKTALQSLDELMQLPVE---RPEGTRFLHRPRLQGEIEFRNVSFA 472
Query: 1052 YPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQK 1111
YP + +++L IR G+ VA++G GSGKST++ LL Y P G + LDGV+I++
Sbjct: 473 YPGQETP-ALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQ 531
Query: 1112 LQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFI 1165
+ LR+ +G V Q+P LF T+R NIA G A + EI A+E+A +F+
Sbjct: 532 IDPADLRRNIGYVPQDPRLFYGTLRDNIALGAPY-ADDEEILRAAELAGVTEFV 584
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]. Length = 694 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 150 bits (382), Expect = 4e-38
Identities = 76/236 (32%), Positives = 126/236 (53%), Gaps = 27/236 (11%)
Query: 404 GFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDG--INLKEFQLQWIRKK 461
S + G T LVG+SGSGKST+ ++ P +G ++ DG ++L +L+ +R++
Sbjct: 309 DVSFDLREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLDLTGGELRRLRRR 368
Query: 462 IGLVSQEPVLFT---GSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVG- 517
I +V Q+P ++ D +A E +R+ + A + + LVG
Sbjct: 369 IQMVFQDPYSSLNPRMTVGDILA--------EPLRIHGGGSGAER--RARVAELLELVGL 418
Query: 518 --EHGT----QLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVN 571
E +LSGGQ+QR+AIARA+ +P++L+LDE SALD + V L +
Sbjct: 419 PPEFLDRYPHELSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEE 478
Query: 572 R--TTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVEDPEGAYSQLIRLQEA 624
T + ++H L+ VR AD +AV++ G+IVE+G K+ E+P+ Y++ +L A
Sbjct: 479 LGLTYLFISHDLAVVRYIADRVAVMYDGRIVEEGPTEKVFENPQHPYTR--KLLAA 532
|
Length = 539 |
| >gnl|CDD|224054 COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 144 bits (365), Expect = 5e-38
Identities = 71/266 (26%), Positives = 124/266 (46%), Gaps = 24/266 (9%)
Query: 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 443
IE+R++ Y ++ G S + G L+G +G+GK+T++ ++ P +GE+
Sbjct: 5 IEVRNLTKKY--GGDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEI 62
Query: 444 LIDGINLKEFQLQWIRKKIGLVSQEPVLFTG-SIKDNIAY------GKDDATTEEIRVAT 496
L+ G ++ + + +R++IG V QEP L+ ++++N+ + + E I
Sbjct: 63 LVLGYDVVKEPAK-VRRRIGYVPQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEELL 121
Query: 497 ELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAE 556
EL +K + LSGG KQR++IA A+L DP +L+LDE TS LD E
Sbjct: 122 ELFGLEDKANKKVRT-----------LSGGMKQRLSIALALLHDPELLILDEPTSGLDPE 170
Query: 557 SEKVVQEALDRI--MVNRTTVIVAHRLSTV-RNADMIAVIHRGKIVEKGTHSKLVEDPEG 613
S + + E L + T ++ H L D + +++ GKI+ +GT +L E G
Sbjct: 171 SRREIWELLRELAKEGGVTILLSTHILEEAEELCDRVIILNDGKIIAEGTPEELKEKFGG 230
Query: 614 AYSQLIRLQEANKESEQTIDGQRKSE 639
+ + K E
Sbjct: 231 KGVIELEPERLELAELLEGLKLVKGE 256
|
Length = 293 |
| >gnl|CDD|215595 PLN03130, PLN03130, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 153 bits (389), Expect = 1e-37
Identities = 89/281 (31%), Positives = 158/281 (56%), Gaps = 26/281 (9%)
Query: 382 GDIELRDVYFSYPARPN-EQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQA 440
G I+ DV Y RP + G S IS +VG++G+GKS++++ + R + +
Sbjct: 1236 GSIKFEDVVLRY--RPELPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELER 1293
Query: 441 GEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNI-AYGK-DDATTEEIRVATEL 498
G +LIDG ++ +F L +RK +G++ Q PVLF+G+++ N+ + + +DA E + E
Sbjct: 1294 GRILIDGCDISKFGLMDLRKVLGIIPQAPVLFSGTVRFNLDPFNEHNDADLWE---SLER 1350
Query: 499 ANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESE 558
A+ I + G+D V E G S GQ+Q +++ARA+L+ +IL+LDEAT+A+D ++
Sbjct: 1351 AHLKDVIRRNSLGLDAEVSEAGENFSVGQRQLLSLARALLRRSKILVLDEATAAVDVRTD 1410
Query: 559 KVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVEDPEGAYSQL 618
++Q+ + + T +I+AHRL+T+ + D I V+ G++VE T L+ + A+S++
Sbjct: 1411 ALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILVLDAGRVVEFDTPENLLSNEGSAFSKM 1470
Query: 619 IR---------LQ---------EANKESEQTIDGQRKSEIS 641
++ L+ +E + +DGQRK S
Sbjct: 1471 VQSTGAANAQYLRSLVFGGDEDRLAREESKALDGQRKWLAS 1511
|
Length = 1622 |
| >gnl|CDD|224059 COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 140 bits (355), Expect = 2e-37
Identities = 76/233 (32%), Positives = 121/233 (51%), Gaps = 26/233 (11%)
Query: 384 IELRDVYFSYPARPNE-QIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGE 442
IEL++V Y + + ++ I +G A+VG SGSGKST+++L+ P +GE
Sbjct: 2 IELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGE 61
Query: 443 VLIDGIN---LKEFQLQWIR-KKIGLVSQE-PVLFTGSIKDNI---AYGKDDATTEEIRV 494
VLI+G + L E +L +R KKIG V Q +L ++ +N+ + R
Sbjct: 62 VLINGKDLTKLSEKELAKLRRKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRRKRA 121
Query: 495 ATELAN----AAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEAT 550
A EL + + K P ++LSGGQ+QR+AIARA++ +P+I+L DE T
Sbjct: 122 AEELLEVLGLEDRLLKKKP-----------SELSGGQQQRVAIARALINNPKIILADEPT 170
Query: 551 SALDAESEKVVQEALDRI--MVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEK 601
LD+++ K V E L + +T ++V H + AD + + GKI E+
Sbjct: 171 GNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELAKYADRVIELKDGKIEEE 223
|
Length = 226 |
| >gnl|CDD|224051 COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 140 bits (355), Expect = 2e-37
Identities = 75/244 (30%), Positives = 132/244 (54%), Gaps = 35/244 (14%)
Query: 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 443
IE++++ S+ ++++ G S+S+ G ++G SGSGKST++ + +P +G +
Sbjct: 3 IEIKNLSKSFG---DKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSI 59
Query: 444 LIDGIN-LKEFQLQWIRKKIGLVSQEPVLFTG-SIKDNIAYG--------KDDATTEEIR 493
+DG + + + +R+K+G+V Q+ LF ++ +N+ K +A E
Sbjct: 60 TVDGEDVGDKKDILKLRRKVGMVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEA--REK- 116
Query: 494 VATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSAL 553
A + ++K+ G+ + QLSGGQ+QR+AIARA+ DP+++L DE TSAL
Sbjct: 117 -------ALELLEKV--GLADKADAYPAQLSGGQQQRVAIARALAMDPKVMLFDEPTSAL 167
Query: 554 DAESEKVVQEALDRIMVN-----RTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKL 607
D E V E LD +M + T +IV H + R AD + + +GKI+E+G +
Sbjct: 168 DPEL---VGEVLD-VMKDLAEEGMTMIIVTHEMGFAREVADRVIFMDQGKIIEEGPPEEF 223
Query: 608 VEDP 611
++P
Sbjct: 224 FDNP 227
|
Length = 240 |
| >gnl|CDD|188099 TIGR00972, 3a0107s01c2, phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 140 bits (355), Expect = 2e-37
Identities = 80/243 (32%), Positives = 125/243 (51%), Gaps = 23/243 (9%)
Query: 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYD-----P 438
IE+ ++ Y ++ ++ I AL+G SG GKST++ + R D
Sbjct: 2 IEIENLNLFYG---EKEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVR 58
Query: 439 QAGEVLIDGINL--KEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYG------KDDATTE 490
G+VL DG ++ K+ + +R+++G+V Q+P F SI DNIAYG KD +
Sbjct: 59 IEGKVLFDGQDIYDKKIDVVELRRRVGMVFQKPNPFPMSIYDNIAYGPRLHGIKDKKELD 118
Query: 491 EIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEAT 550
EI V L AA L + + + LSGGQ+QR+ IARA+ +P +LLLDE T
Sbjct: 119 EI-VEESLKKAA-----LWDEVKDRLHDSALGLSGGQQQRLCIARALAVEPEVLLLDEPT 172
Query: 551 SALDAESEKVVQEALDRIMVNRTTVIVAHRLS-TVRNADMIAVIHRGKIVEKGTHSKLVE 609
SALD + ++E + + T VIV H + R +D A + G++VE G ++
Sbjct: 173 SALDPIATGKIEELIQELKKKYTIVIVTHNMQQAARISDRTAFFYDGELVEYGPTEQIFT 232
Query: 610 DPE 612
+P+
Sbjct: 233 NPK 235
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters [Transport and binding proteins, Anions]. Length = 247 |
| >gnl|CDD|224045 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 140 bits (356), Expect = 3e-37
Identities = 73/234 (31%), Positives = 114/234 (48%), Gaps = 28/234 (11%)
Query: 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 443
+E+ ++ F Y +P I S SI G ++G +GSGKST++ + P++GEV
Sbjct: 3 LEVENLSFGYGGKP---ILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEV 59
Query: 444 LIDGINLKEFQLQWIRKKIGLVSQEPVLFTG-SIKDNIAYGK----------DDATTEEI 492
L+DG ++ + + KK+ V Q P G ++ + + G+ E +
Sbjct: 60 LLDGKDIASLSPKELAKKLAYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIV 119
Query: 493 RVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSA 552
A EL D+ +D LSGG++QR+ IARA+ ++ ILLLDE TS
Sbjct: 120 EEALELLGLEHLADR---PVDE--------LSGGERQRVLIARALAQETPILLLDEPTSH 168
Query: 553 LDAESEKVVQEALDRIMV--NRTTVIVAHRLS-TVRNADMIAVIHRGKIVEKGT 603
LD + V E L + T V+V H L+ R AD + ++ GKIV +GT
Sbjct: 169 LDIAHQIEVLELLRDLNREKGLTVVMVLHDLNLAARYADHLILLKDGKIVAQGT 222
|
Length = 258 |
| >gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Score = 151 bits (382), Expect = 7e-37
Identities = 111/399 (27%), Positives = 196/399 (49%), Gaps = 45/399 (11%)
Query: 768 LALGAGSFLLSPAQSYFFAVAGNKLIQRIRSMCFEKVIHMEVSWFDEPEHSSGAIGARLS 827
+ +G F+LS S+ V K+++ ++ + V + + + D G++L+
Sbjct: 104 VLIGIFQFILSFISSFCMDVVTTKILKTLKLEFLKSVFYQDGQFHDNNP------GSKLT 157
Query: 828 ADA----ASVRALVGDALARIVQNISTAAAGLIIAFTASWQLALIILVMLPLIGVSGYTQ 883
+D V A +G I S I + + +L L I + PLI + G
Sbjct: 158 SDLDFYLEQVNAGIGTKFITIFTYASAFLGLYIWSLFKNARLTLCITCVFPLIYICGVIC 217
Query: 884 MKFMKGFSADAKMKYEEASQVANDAVGSIRTVASFCAEEKVMQ-------LYKK-KCEAP 935
K +K + + + +A+ IRTV S+C E+ +++ LY K +A
Sbjct: 218 NKKVKINKKTSLLYNNNTMSIIEEALVGIRTVVSYCGEKTILKKFNLSEKLYSKYILKAN 277
Query: 936 MKTGIRQGMVSGGGFGASFFLLFAFYAASFYAGARLVED------------GKATFSDVF 983
+ GM++G + A YA F+ G R++ G + S +
Sbjct: 278 FMESLHIGMING--------FILASYAFGFWYGTRIIISDLSNQQPNNDFHGGSVISILL 329
Query: 984 KVFFSLTMTAIGISQSSSFSSDSNKAKSAAASIFAIIDRESKIDPSDESGTILEDVKGEI 1043
V S+ M I + + + K+ A S++ II+R+ ++ +D+ G L+D+K +I
Sbjct: 330 GVLISMFMLTIILPNITEYM----KSLEATNSLYEIINRKPLVENNDD-GKKLKDIK-KI 383
Query: 1044 ELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHIT 1103
+ +V F Y +R DV++++DLN + GKT A VGESG GKST++ L++R YDP G I
Sbjct: 384 QFKNVRFHYDTRKDVEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLYDPTEGDII 443
Query: 1104 L-DGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIAY 1141
+ D ++ + LKW R ++G+VSQ+P+LF+++I+ NI Y
Sbjct: 444 INDSHNLKDINLKWWRSKIGVVSQDPLLFSNSIKNNIKY 482
|
Length = 1466 |
| >gnl|CDD|226359 COG3839, MalK, ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 142 bits (359), Expect = 8e-37
Identities = 70/244 (28%), Positives = 126/244 (51%), Gaps = 34/244 (13%)
Query: 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 443
+EL++V S+ + ++ ++ I G L+G SG GKST++ +I +P +GE+
Sbjct: 4 LELKNVRKSFG---SFEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEI 60
Query: 444 LIDGINLKEFQLQWIRKKIGLVSQEPVLF-TGSIKDNIAYG------KDDATTEEIRVAT 496
LIDG ++ + + ++ I +V Q L+ ++ +NIA+G + ++
Sbjct: 61 LIDGRDVTDLPPE--KRGIAMVFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVA 118
Query: 497 ELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAE 556
+L +++ P QLSGGQ+QR+A+ARA+++ P++ LLDE S LDA+
Sbjct: 119 KLLGLEHLLNRKP-----------LQLSGGQRQRVALARALVRKPKVFLLDEPLSNLDAK 167
Query: 557 SE----KVVQEALDRIMVNRTTVIVAHRL---STVRNADMIAVIHRGKIVEKGTHSKLVE 609
+++ +R+ TT+ V H T+ AD I V++ G+I + GT +L E
Sbjct: 168 LRVLMRSEIKKLHERL--GTTTIYVTHDQVEAMTL--ADRIVVMNDGRIQQVGTPLELYE 223
Query: 610 DPEG 613
P
Sbjct: 224 RPAN 227
|
Length = 338 |
| >gnl|CDD|213255 cd03288, ABCC_SUR2, ATP-binding cassette domain 2 of the sulfonylurea receptor SUR | Back alignment and domain information |
|---|
Score = 138 bits (348), Expect = 3e-36
Identities = 72/212 (33%), Positives = 127/212 (59%), Gaps = 1/212 (0%)
Query: 409 ISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQE 468
I G + G++GSGKS++ R D G+++IDGI++ + L +R ++ ++ Q+
Sbjct: 44 IKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPLHTLRSRLSIILQD 103
Query: 469 PVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQK 528
P+LF+GSI+ N+ T + + A E+A + LP G+D +V E G S GQ+
Sbjct: 104 PILFSGSIRFNLDPECK-CTDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQR 162
Query: 529 QRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNAD 588
Q +ARA ++ IL++DEAT+++D +E ++Q+ + +RT V +AHR+ST+ +AD
Sbjct: 163 QLFCLARAFVRKSSILIMDEATASIDMATENILQKVVMTAFADRTVVTIAHRVSTILDAD 222
Query: 589 MIAVIHRGKIVEKGTHSKLVEDPEGAYSQLIR 620
++ V+ RG +VE T L+ +G ++ L+R
Sbjct: 223 LVLVLSRGILVECDTPENLLAQEDGVFASLVR 254
|
The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 257 |
| >gnl|CDD|224050 COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 139 bits (352), Expect = 3e-36
Identities = 78/243 (32%), Positives = 128/243 (52%), Gaps = 30/243 (12%)
Query: 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 443
IE +V Y + +++I G L+G SGSGK+T + +I R +P +GE+
Sbjct: 2 IEFENVSKRYGNKK---AVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEI 58
Query: 444 LIDGINLKEFQLQWIRKKIGLVSQEPVLFTG-SIKDNIAY-----GKDDATTEEIRVATE 497
LIDG ++ + +R+KIG V Q+ LF ++ +NIA G D ++ A E
Sbjct: 59 LIDGEDISDLDPVELRRKIGYVIQQIGLFPHLTVAENIATVPKLLGWDKERIKKR--ADE 116
Query: 498 LA-----NAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSA 552
L + +++ D+ P +LSGGQ+QR+ +ARA+ DP ILL+DE A
Sbjct: 117 LLDLVGLDPSEYADRYPH-----------ELSGGQQQRVGVARALAADPPILLMDEPFGA 165
Query: 553 LDAESEKVVQEALDRIM--VNRTTVIVAHRLS-TVRNADMIAVIHRGKIVEKGTHSKLVE 609
LD + K +QE + + + +T V V H + ++ AD IAV+ G+IV+ T +++
Sbjct: 166 LDPITRKQLQEEIKELQKELGKTIVFVTHDIDEALKLADRIAVMDAGEIVQYDTPDEILA 225
Query: 610 DPE 612
+P
Sbjct: 226 NPA 228
|
Length = 309 |
| >gnl|CDD|213262 cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cassette domain of the osmoprotectant transporter | Back alignment and domain information |
|---|
Score = 136 bits (345), Expect = 6e-36
Identities = 79/241 (32%), Positives = 125/241 (51%), Gaps = 27/241 (11%)
Query: 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 443
IE +V Y + + ++ I+ G L+G SGSGK+T + +I R +P +GE+
Sbjct: 1 IEFENVTKRYGGGK--KAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEI 58
Query: 444 LIDGINLKEFQLQWIRKKIGLVSQEPVLFTG-SIKDNIAY-----GKDDATTEEIRVATE 497
IDG +++E +R+KIG V Q+ LF ++++NIA E R
Sbjct: 59 FIDGEDIREQDPVELRRKIGYVIQQIGLFPHMTVEENIALVPKLLKWPKEKIRE-RADEL 117
Query: 498 LA----NAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSAL 553
LA + A+F D+ P +LSGGQ+QR+ +ARA+ DP +LL+DE AL
Sbjct: 118 LALVGLDPAEFADRYPH-----------ELSGGQQQRVGVARALAADPPLLLMDEPFGAL 166
Query: 554 DAESEKVVQEALDRI--MVNRTTVIVAHRL-STVRNADMIAVIHRGKIVEKGTHSKLVED 610
D + +QE R+ + +T V V H + R AD IA++ G+IV+ GT +++
Sbjct: 167 DPITRDQLQEEFKRLQQELGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQVGTPDEILRS 226
Query: 611 P 611
P
Sbjct: 227 P 227
|
OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 242 |
| >gnl|CDD|234033 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Score = 142 bits (361), Expect = 2e-35
Identities = 113/476 (23%), Positives = 184/476 (38%), Gaps = 53/476 (11%)
Query: 718 IPVILAGTIA-AMANGVILPIYGLLISSVIETFF---KPPHELKKDSRFWALIYLALGAG 773
LA + +++ L++ V++ +P EL +
Sbjct: 1 ARRALALLALLGVLGALLIIAQAWLLARVVDGLISAGEPLAEL----LPALGALALVLLL 56
Query: 774 SFLLSPAQSYFFAVAGNKLIQRIRSMCFEKVIHMEVSWFDEPEHSSGAIGARLSADAASV 833
LL Q A A + ++R E V + W G + V
Sbjct: 57 RALLGWLQERAAARAAAAVKSQLRERLLEAVAALGPRWL-----QGRPSGELATLALEGV 111
Query: 834 RALVGDALARIVQNISTAAAGLIIA---FTASWQLALIILVMLPLIGVSGYTQMKFMK-- 888
AL G + Q + L I F W LI+L+ PLI + FM
Sbjct: 112 EALDGYFARYLPQLVLAVIVPLAILAAVFPQDWISGLILLLTAPLIPI-------FMILI 164
Query: 889 GFSADAKMK--YEEASQVAN---DAVGSIRTVASFCAEEKVMQLYKKKCEAPMKTGIRQG 943
G++A A + + S+++ D + + T+ F + ++ E + +R
Sbjct: 165 GWAAQAAARKQWAALSRLSGHFLDRLRGLPTLKLFGRAKAQAAAIRRSSEEYRERTMRVL 224
Query: 944 MVSGGGFGASFFL-LFAFYAASF---YAGARLVEDGKATFSDVFKVF-----FSLTMTAI 994
++ F +S L LFA + + Y G RL+ G + V F L
Sbjct: 225 RIA---FLSSAVLELFATLSVALVAVYIGFRLL-AGDLDLATGLFVLLLAPEFYLP---- 276
Query: 995 GISQSSSFSSDSNKAKSAAASIFAIIDRESKIDPSDESGTILEDVKGEIELHHVSFKYPS 1054
+ Q + +AA ++FA++D + + +E VS YP
Sbjct: 277 -LRQLGAQYHARADGVAAAEALFAVLDAAPRPLAGKAP--VTAAPAPSLEFSGVSVAYPG 333
Query: 1055 RPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQL 1114
R R ++ + G+ VALVG SG+GKST+++LL F DP G I ++GV +
Sbjct: 334 RR--PALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADA 391
Query: 1115 KWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQ 1170
R Q+ V Q P LF TI NI + DA++AEI+ A E A +F+ +L Q
Sbjct: 392 DSWRDQIAWVPQHPFLFAGTIAENIRLAR-PDASDAEIREALERAGLDEFVAALPQ 446
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD. Length = 529 |
| >gnl|CDD|213222 cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein | Back alignment and domain information |
|---|
Score = 134 bits (339), Expect = 2e-35
Identities = 75/226 (33%), Positives = 115/226 (50%), Gaps = 19/226 (8%)
Query: 384 IELRDVYFSYPARPNE-QIFSGFSISISSGTTAALVGQSGSGKST---VISLIERFYDPQ 439
IEL+++ +Y + Q G S+SI G A+VG SGSGKST ++ ++R P
Sbjct: 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDR---PT 57
Query: 440 AGEVLIDGIN---LKEFQLQWIR-KKIGLVSQEPVLFTG-SIKDNIAYGKDDATTEEIRV 494
+GEV +DG + L E +L R + IG V Q L + +N+ +
Sbjct: 58 SGEVRVDGTDISKLSEKELAAFRRRHIGFVFQSFNLLPDLTALENVELP---LLLAGVPK 114
Query: 495 ATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALD 554
A + ++++ G+ + + ++LSGGQ+QR+AIARA+ DP+I+L DE T LD
Sbjct: 115 KERRERAEELLERV--GLGDRLNHYPSELSGGQQQRVAIARALANDPKIILADEPTGNLD 172
Query: 555 AESEKVVQEALDRI--MVNRTTVIVAHRLSTVRNADMIAVIHRGKI 598
+E+ K V E L + T V+V H AD I + GKI
Sbjct: 173 SETGKEVMELLRELNKEAGTTIVVVTHDPELAEYADRIIELRDGKI 218
|
This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. Length = 218 |
| >gnl|CDD|224052 COG1127, Ttg2A, ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 135 bits (342), Expect = 3e-35
Identities = 83/234 (35%), Positives = 128/234 (54%), Gaps = 27/234 (11%)
Query: 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 443
IE+R V S+ R I G + + G A++G SGSGKST++ LI P GE+
Sbjct: 9 IEVRGVTKSFGDR---VILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEI 65
Query: 444 LIDGIN---LKEFQLQWIRKKIGLVSQEPVLFTG-SIKDNIAYGKDDATTEEIRVATELA 499
LIDG + L E +L IRK++G++ Q+ LF+ ++ +N+A+ + T + EL
Sbjct: 66 LIDGEDIPQLSEEELYEIRKRMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELV 125
Query: 500 NAAKFIDKLPQGIDTLVGEHG-------TQLSGGQKQRIAIARAILKDPRILLLDEATSA 552
+ KL LVG G ++LSGG ++R+A+ARAI DP +L LDE TS
Sbjct: 126 -----LMKL-----ELVGLRGAAADLYPSELSGGMRKRVALARAIALDPELLFLDEPTSG 175
Query: 553 LDAESEKVVQEALDRIM--VNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGT 603
LD S V+ E + + + T ++V H L ++ AD +AV+ GK++ +GT
Sbjct: 176 LDPISAGVIDELIRELNDALGLTVIMVTHDLDSLLTIADRVAVLADGKVIAEGT 229
|
Length = 263 |
| >gnl|CDD|188098 TIGR00957, MRP_assoc_pro, multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Score = 145 bits (368), Expect = 4e-35
Identities = 77/231 (33%), Positives = 140/231 (60%), Gaps = 6/231 (2%)
Query: 381 RGDIELRDVYFSYPARPN-EQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQ 439
RG +E R+ Y R + + + +++I G +VG++G+GKS++ + R +
Sbjct: 1282 RGRVEFRNYCLRY--REDLDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESA 1339
Query: 440 AGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNI-AYGKDDATTEEIRVATEL 498
GE++IDG+N+ + L +R KI ++ Q+PVLF+GS++ N+ + + + EE+ A EL
Sbjct: 1340 EGEIIIDGLNIAKIGLHDLRFKITIIPQDPVLFSGSLRMNLDPFSQ--YSDEEVWWALEL 1397
Query: 499 ANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESE 558
A+ F+ LP +D E G LS GQ+Q + +ARA+L+ +IL+LDEAT+A+D E++
Sbjct: 1398 AHLKTFVSALPDKLDHECAEGGENLSVGQRQLVCLARALLRKTKILVLDEATAAVDLETD 1457
Query: 559 KVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVE 609
++Q + + T + +AHRL+T+ + + V+ +G++ E G S L++
Sbjct: 1458 NLIQSTIRTQFEDCTVLTIAHRLNTIMDYTRVIVLDKGEVAEFGAPSNLLQ 1508
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved [Transport and binding proteins, Other]. Length = 1522 |
| >gnl|CDD|224049 COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 134 bits (339), Expect = 4e-35
Identities = 74/257 (28%), Positives = 125/257 (48%), Gaps = 32/257 (12%)
Query: 384 IELRDVYFSYPARPNE-QIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGE 442
+ +R++ Y + S+ I G T +VG+SGSGKST+ L+ P +G
Sbjct: 4 LSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGS 63
Query: 443 VLIDGINLKEFQ-LQWIRKKIGLVSQEPVLFTGS------IKDNIA-----YGKDDATTE 490
+L+DG L + + + + +V Q+P S + ++ +G +
Sbjct: 64 ILLDGKPLAPKKRAKAFYRPVQMVFQDP---YSSLNPRRTVGRILSEPLRPHGLSKSQQR 120
Query: 491 EIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEAT 550
+ ++ F+D+ P +LSGGQ+QRIAIARA++ +P++L+LDE T
Sbjct: 121 IAELLDQVGLPPSFLDRRPH-----------ELSGGQRQRIAIARALIPEPKLLILDEPT 169
Query: 551 SALDAESEKVVQEALDRIMVNR--TTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKL 607
SALD + + L + R T + ++H L+ V + D IAV+ G+IVE G +L
Sbjct: 170 SALDVSVQAQILNLLLELKKERGLTYLFISHDLALVEHMCDRIAVMDNGQIVEIGPTEEL 229
Query: 608 VEDPEGAYSQLIRLQEA 624
+ P Y++ L EA
Sbjct: 230 LSHPSHPYTRE--LLEA 244
|
Length = 252 |
| >gnl|CDD|213197 cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A | Back alignment and domain information |
|---|
Score = 131 bits (332), Expect = 4e-35
Identities = 57/218 (26%), Positives = 107/218 (49%), Gaps = 48/218 (22%)
Query: 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 443
IE+R++ Y + S+++ G L+G +G+GK+T+I +I P +GE+
Sbjct: 1 IEVRNLSKRYGKKT---ALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEI 57
Query: 444 LIDGINLKEFQLQWIRKKIGLVSQEPVLFTG-SIKDNIAYGKDDATTEEIRVATELANAA 502
+ G ++K+ + ++++IG + +EP L+ ++++N+
Sbjct: 58 KVLGKDIKKEPEE-VKRRIGYLPEEPSLYENLTVRENL---------------------- 94
Query: 503 KFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQ 562
+LSGG KQR+A+A+A+L DP +L+LDE TS LD ES +
Sbjct: 95 -------------------KLSGGMKQRLALAQALLHDPELLILDEPTSGLDPESRREFW 135
Query: 563 EALDRIMVNRTTVIVA-HRLSTVRN-ADMIAVIHRGKI 598
E L + T++++ H L D +A+++ G+I
Sbjct: 136 ELLRELKKEGKTILLSSHILEEAERLCDRVAILNNGRI 173
|
This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 173 |
| >gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins | Back alignment and domain information |
|---|
Score = 131 bits (331), Expect = 7e-35
Identities = 64/224 (28%), Positives = 104/224 (46%), Gaps = 50/224 (22%)
Query: 385 ELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVL 444
E+ ++ Y R + S+SI +G ++G +G+GKST++ + P +GE+L
Sbjct: 1 EVENLSVGYGGRT---VLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEIL 57
Query: 445 IDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKF 504
+DG +L + + +KI V Q A EL A
Sbjct: 58 LDGKDLASLSPKELARKIAYVPQ---------------------------ALELLGLAHL 90
Query: 505 IDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAES-----EK 559
D+ + LSGG++QR+ +ARA+ ++P ILLLDE TS LD E
Sbjct: 91 ADR---PFNE--------LSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLEL 139
Query: 560 VVQEALDRIMVNRTTVIVAHRLS-TVRNADMIAVIHRGKIVEKG 602
+ + A +R +T V+V H L+ R AD + ++ G+IV +G
Sbjct: 140 LRRLARER---GKTVVMVLHDLNLAARYADRVILLKDGRIVAQG 180
|
ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. Length = 180 |
| >gnl|CDD|224041 COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 132 bits (335), Expect = 1e-34
Identities = 68/205 (33%), Positives = 99/205 (48%), Gaps = 28/205 (13%)
Query: 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 443
+E+ V S+ + ++S+ G A++G SG GKST++ LI P +GEV
Sbjct: 4 LEIEGVSKSFGGVE---VLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEV 60
Query: 444 LIDGINLKEFQLQWIRKKIGLVSQEPVLFTG-SIKDNIAYG------KDDATTEEIRVAT 496
L+DG + IG V QE L ++ DN+A G E +
Sbjct: 61 LLDGRPVTG-----PGPDIGYVFQEDALLPWLTVLDNVALGLELRGKSKAEARERAKELL 115
Query: 497 ELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAE 556
EL A F DK P QLSGG +QR+AIARA+ P++LLLDE ALDA
Sbjct: 116 ELVGLAGFEDKYPH-----------QLSGGMRQRVAIARALATRPKLLLLDEPFGALDAL 164
Query: 557 SEKVVQEALDRIM--VNRTTVIVAH 579
+ + +Q+ L R+ +T ++V H
Sbjct: 165 TREELQDELLRLWEETRKTVLLVTH 189
|
Length = 248 |
| >gnl|CDD|237452 PRK13632, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 133 bits (336), Expect = 2e-34
Identities = 77/239 (32%), Positives = 134/239 (56%), Gaps = 22/239 (9%)
Query: 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 443
I++ +V FSYP N S I+ G A++G +GSGKST+ ++ PQ+GE+
Sbjct: 8 IKVENVSFSYPNSEN-NALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEI 66
Query: 444 LIDGINLKEFQLQWIRKKIGLVSQEP-VLFTGS-IKDNIAYGKDDA--TTEEIR-VATEL 498
IDGI + + L+ IRKKIG++ Q P F G+ ++D+IA+G ++ ++++ + +L
Sbjct: 67 KIDGITISKENLKEIRKKIGIIFQNPDNQFIGATVEDDIAFGLENKKVPPKKMKDIIDDL 126
Query: 499 ANAA---KFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDA 555
A ++DK PQ LSGGQKQR+AIA + +P I++ DE+TS LD
Sbjct: 127 AKKVGMEDYLDKEPQ-----------NLSGGQKQRVAIASVLALNPEIIIFDESTSMLDP 175
Query: 556 ESEKVVQEALDRIMVNRT-TVI-VAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVEDPE 612
+ ++ +++ + + R T+I + H + AD + V GK++ +G +++ + E
Sbjct: 176 KGKREIKKIMVDLRKTRKKTLISITHDMDEAILADKVIVFSEGKLIAQGKPKEILNNKE 234
|
Length = 271 |
| >gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain | Back alignment and domain information |
|---|
Score = 127 bits (321), Expect = 8e-34
Identities = 64/215 (29%), Positives = 95/215 (44%), Gaps = 60/215 (27%)
Query: 385 ELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVL 444
E+ ++ F Y R S+++ +G ALVG +GSGKST++ I P +GE+L
Sbjct: 1 EIENLSFRYGGRT---ALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEIL 57
Query: 445 IDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKF 504
IDG ++ + L+ + + I Y
Sbjct: 58 IDGKDIAKLPLEEL------------------RRRIGY---------------------- 77
Query: 505 IDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEA 564
+PQ LSGGQ+QR+A+ARA+L +P +LLLDE TS LD S + + E
Sbjct: 78 ---VPQ------------LSGGQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLEL 122
Query: 565 LDRIMV-NRTTVIVAHRLSTVRNA-DMIAVIHRGK 597
L + RT +IV H A D + V+ GK
Sbjct: 123 LRELAEEGRTVIIVTHDPELAELAADRVIVLKDGK 157
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157 |
| >gnl|CDD|184195 PRK13635, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 131 bits (331), Expect = 9e-34
Identities = 73/239 (30%), Positives = 122/239 (51%), Gaps = 28/239 (11%)
Query: 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 443
I + + F YP S S+ G A+VG +GSGKST+ L+ P+AG +
Sbjct: 6 IRVEHISFRYP-DAATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTI 64
Query: 444 LIDGINLKEFQLQWIRKKIGLVSQEP-VLFTGS-IKDNIAYGKD------DATTEEIRVA 495
+ G+ L E + +R+++G+V Q P F G+ ++D++A+G + + E + A
Sbjct: 65 TVGGMVLSEETVWDVRRQVGMVFQNPDNQFVGATVQDDVAFGLENIGVPREEMVERVDQA 124
Query: 496 TELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDA 555
F+++ P +LSGGQKQR+AIA + P I++LDEATS LD
Sbjct: 125 LRQVGMEDFLNREPH-----------RLSGGQKQRVAIAGVLALQPDIIILDEATSMLDP 173
Query: 556 ESEKVVQEALD--RIMVN--RTTVI-VAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVE 609
+E L+ R + TV+ + H L AD + V+++G+I+E+GT ++ +
Sbjct: 174 RGR---REVLETVRQLKEQKGITVLSITHDLDEAAQADRVIVMNKGEILEEGTPEEIFK 229
|
Length = 279 |
| >gnl|CDD|213229 cd03262, ABC_HisP_GlnQ, ATP-binding cassette domain of the histidine and glutamine transporters | Back alignment and domain information |
|---|
Score = 128 bits (325), Expect = 1e-33
Identities = 75/233 (32%), Positives = 120/233 (51%), Gaps = 38/233 (16%)
Query: 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 443
IE+++++ S+ + + G +++ G ++G SGSGKST++ I +P +G +
Sbjct: 1 IEIKNLHKSFG---DFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTI 57
Query: 444 LIDG--INLKEFQLQWIRKKIGLVSQEPVLFTG-SIKDNIAY------GKDDATTEEIRV 494
+IDG + + + +R+K+G+V Q+ LF ++ +NI G A EE
Sbjct: 58 IIDGLKLTDDKKNINELRQKVGMVFQQFNLFPHLTVLENITLAPIKVKGMSKAEAEER-- 115
Query: 495 ATEL---ANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATS 551
A EL A D P QLSGGQ+QR+AIARA+ +P+++L DE TS
Sbjct: 116 ALELLEKVGLADKADAYPA-----------QLSGGQQQRVAIARALAMNPKVMLFDEPTS 164
Query: 552 ALDAESEKVVQEALDRIMVN-----RTTVIVAHRLSTVRN-ADMIAVIHRGKI 598
ALD E +V E LD +M + T V+V H + R AD + + G+I
Sbjct: 165 ALDPE---LVGEVLD-VMKDLAEEGMTMVVVTHEMGFAREVADRVIFMDDGRI 213
|
HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, respectively. Histidine permease is a multi-subunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryotic extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQMP system of S. typhimurium, where HisJ is the extracellular solute binding proteins and HisP is the ABC protein. Length = 213 |
| >gnl|CDD|213261 cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system | Back alignment and domain information |
|---|
Score = 130 bits (329), Expect = 1e-33
Identities = 74/224 (33%), Positives = 118/224 (52%), Gaps = 25/224 (11%)
Query: 406 SISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDG---INLKEFQLQWIR-KK 461
S+ + G ++G SGSGKST++ I R +P +G+VLIDG + +L+ +R KK
Sbjct: 44 SLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRKK 103
Query: 462 IGLVSQEPVLFTG-SIKDNIAYG---KDDATTEEIRVATE---LANAAKFIDKLPQGIDT 514
I +V Q L ++ +N+A+G + E A E L + K P
Sbjct: 104 ISMVFQSFALLPHRTVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWEHKYPD---- 159
Query: 515 LVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRI--MVNR 572
+LSGG +QR+ +ARA+ DP ILL+DEA SALD + +Q+ L R+ + +
Sbjct: 160 -------ELSGGMQQRVGLARALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAELQK 212
Query: 573 TTVIVAHRLS-TVRNADMIAVIHRGKIVEKGTHSKLVEDPEGAY 615
T V + H L +R D IA++ G++V+ GT +++ +P Y
Sbjct: 213 TIVFITHDLDEALRLGDRIAIMKDGRLVQVGTPEEILTNPANDY 256
|
This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 269 |
| >gnl|CDD|223521 COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 131 bits (333), Expect = 2e-33
Identities = 80/283 (28%), Positives = 134/283 (47%), Gaps = 45/283 (15%)
Query: 384 IELRD--VYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQ-- 439
+E+++ V F A + G S + G +VG+SGSGKS + I
Sbjct: 2 LEVKNLSVSFPTDAGVV-KAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNA 60
Query: 440 ---AGEVLIDGINL---KEFQLQWIR-KKIGLVSQEPV-----LFTGSIKDNIA-----Y 482
GE+L DG +L E +L+ IR K+I ++ Q+P+ + T I D IA +
Sbjct: 61 RIVGGEILFDGKDLLSLSEKELRKIRGKEIAMIFQDPMTSLNPVMT--IGDQIAEVLRLH 118
Query: 483 GKDDATTEEIRVATELA------NAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARA 536
GK + E A EL + + + P H +LSGG +QR+ IA A
Sbjct: 119 GKGLSKKEAKERAIELLELVGIPDPERRLKSYP---------H--ELSGGMRQRVMIAMA 167
Query: 537 ILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTT--VIVAHRLSTVRN-ADMIAVI 593
+ +P++L+ DE T+ALD + + + L + + T +++ H L V AD +AV+
Sbjct: 168 LALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDLGVVAEIADRVAVM 227
Query: 594 HRGKIVEKGTHSKLVEDPEGAYSQ-LIRLQEANKESEQTIDGQ 635
+ G+IVE+G ++ ++P+ Y++ L+ E I G
Sbjct: 228 YAGRIVEEGPVEEIFKNPKHPYTRGLLNSLPRLGERLPPIPGS 270
|
Length = 316 |
| >gnl|CDD|236863 PRK11153, metN, DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 132 bits (335), Expect = 2e-33
Identities = 84/237 (35%), Positives = 126/237 (53%), Gaps = 31/237 (13%)
Query: 384 IELRDVYFSYPARPNE-QIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGE 442
IEL+++ +P + S+ I +G ++G SG+GKST+I I P +G
Sbjct: 2 IELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGR 61
Query: 443 VLIDGIN---LKEFQLQWIRKKIGLVSQEPVLFTG-SIKDNIAYGKDDATTEEIRVATEL 498
VL+DG + L E +L+ R++IG++ Q L + ++ DN+A EL
Sbjct: 62 VLVDGQDLTALSEKELRKARRQIGMIFQHFNLLSSRTVFDNVAL------------PLEL 109
Query: 499 ANAAK-FIDKLPQGIDTLVG--EHG----TQLSGGQKQRIAIARAILKDPRILLLDEATS 551
A K I + LVG + QLSGGQKQR+AIARA+ +P++LL DEATS
Sbjct: 110 AGTPKAEIKARVTELLELVGLSDKADRYPAQLSGGQKQRVAIARALASNPKVLLCDEATS 169
Query: 552 ALDAESEKVVQEALDRIMVNR----TTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGT 603
ALD + + + E L I NR T V++ H + V+ D +AVI G++VE+GT
Sbjct: 170 ALDPATTRSILELLKDI--NRELGLTIVLITHEMDVVKRICDRVAVIDAGRLVEQGT 224
|
Length = 343 |
| >gnl|CDD|213266 cd03299, ABC_ModC_like, ATP-binding cassette domain similar to the molybdate transporter | Back alignment and domain information |
|---|
Score = 128 bits (325), Expect = 2e-33
Identities = 66/210 (31%), Positives = 115/210 (54%), Gaps = 11/210 (5%)
Query: 406 SISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLV 465
S+ + G ++G +GSGKS ++ I F P +G++L++G ++ L ++ I V
Sbjct: 19 SLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITN--LPPEKRDISYV 76
Query: 466 SQEPVLFTG-SIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLS 524
Q LF ++ NIAYG ++ + ++ A+ + GID L+ LS
Sbjct: 77 PQNYALFPHMTVYKNIAYGLKKRKVDKKEIERKVLEIAEML-----GIDHLLNRKPETLS 131
Query: 525 GGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVI-VAHRLS 582
GG++QR+AIARA++ +P+ILLLDE SALD +++ ++E L +I TV+ V H
Sbjct: 132 GGEQQRVAIARALVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDFE 191
Query: 583 TVRN-ADMIAVIHRGKIVEKGTHSKLVEDP 611
AD +A++ GK+++ G ++ + P
Sbjct: 192 EAWALADKVAIMLNGKLIQVGKPEEVFKKP 221
|
Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|215640 PLN03232, PLN03232, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 140 bits (354), Expect = 2e-33
Identities = 76/243 (31%), Positives = 143/243 (58%), Gaps = 8/243 (3%)
Query: 381 RGDIELRDVYFSY-PARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQ 439
RG I+ DV+ Y P P + G S +S +VG++G+GKS++++ + R + +
Sbjct: 1232 RGSIKFEDVHLRYRPGLP--PVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELE 1289
Query: 440 AGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIA--YGKDDATTEEIRVATE 497
G ++ID ++ +F L +R+ + ++ Q PVLF+G+++ NI +DA E A E
Sbjct: 1290 KGRIMIDDCDVAKFGLTDLRRVLSIIPQSPVLFSGTVRFNIDPFSEHNDADLWE---ALE 1346
Query: 498 LANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAES 557
A+ ID+ P G+D V E G S GQ+Q +++ARA+L+ +IL+LDEAT+++D +
Sbjct: 1347 RAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQLLSLARALLRRSKILVLDEATASVDVRT 1406
Query: 558 EKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVEDPEGAYSQ 617
+ ++Q + + T +++AHRL+T+ + D I V+ G+++E + +L+ A+ +
Sbjct: 1407 DSLIQRTIREEFKSCTMLVIAHRLNTIIDCDKILVLSSGQVLEYDSPQELLSRDTSAFFR 1466
Query: 618 LIR 620
++
Sbjct: 1467 MVH 1469
|
Length = 1495 |
| >gnl|CDD|227321 COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 136 bits (344), Expect = 3e-33
Identities = 107/446 (23%), Positives = 185/446 (41%), Gaps = 30/446 (6%)
Query: 732 GVILPIYGLLISSVIETFFKPPHELKKDSRFWALIYLALGAGSFLLSPAQSYFFAVAGNK 791
G+ + L++ ++ + +L + ++ L L+ + A K
Sbjct: 13 GIAIIAQAALLADILTKLIE--GQLFQSLLPLLILLLIALVLRAFLAWLRERLGYRAAAK 70
Query: 792 LIQRIRSMCFEKVIHMEVSWFDEPEHSSGAIGARLSADAASVRALVGDALARIVQNISTA 851
+ +R + +K+ + ++ + +G+ + L ++ +
Sbjct: 71 VRASLRQLVLDKLAKLGPAFIAQ--KPAGSAATLALEGIEQLEPYYARYLPQMFLSAIVP 128
Query: 852 AAGLIIAFTASWQLALIILVMLPLIGVSGYTQMKFMKGFSADAKMKYEEASQVANDAVGS 911
LI F +W ALI+L+ PLI + K S S D +
Sbjct: 129 LLILIAIFFFNWAAALILLITAPLIPLFMILVGLAAKDASEKQFSALARLSGHFLDRLRG 188
Query: 912 IRTVASFCAEEKVMQLYKKKCE----APMKTGIRQGMVSGGGFGASFFLLFAFYAAS--- 964
+ T+ +F E + +K E A M +R +S +L F S
Sbjct: 189 LETLRAFGRTEATEERIRKDSEDFRKATMSV-LRIAFLSS-------AVLEFFAYLSIAL 240
Query: 965 --FYAGARLVEDGKATFSDVFKVFFSLTMTA---IGISQSSSFSSDSNKAKSAAASIFAI 1019
Y G RL+ +G T F F L + + SF + ++AA +F +
Sbjct: 241 VAVYIGFRLLGEGDLTL---FAGLFVLILAPEFFQPLRDLGSFFHAAAAGEAAADKLFTL 297
Query: 1020 IDRESKIDPSDESGTILEDVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGE 1079
++ S E + + EI L ++SF+YP DLNL I+AG+ ALVG
Sbjct: 298 LESPVATPGSGEKAEVANEPPIEISLENLSFRYPDGK--PALSDLNLTIKAGQLTALVGA 355
Query: 1080 SGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANI 1139
SG+GKST+++LL F P G I ++G++++ L + R+Q+ VSQ P LF TIR NI
Sbjct: 356 SGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQISWVSQNPYLFAGTIRENI 415
Query: 1140 AYGKGGDATEAEIQAASEMANAHKFI 1165
+ DA++ EI AA + A +F+
Sbjct: 416 LLAR-PDASDEEIIAALDQAGLLEFV 440
|
Length = 559 |
| >gnl|CDD|172750 PRK14262, PRK14262, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 127 bits (321), Expect = 9e-33
Identities = 75/211 (35%), Positives = 122/211 (57%), Gaps = 20/211 (9%)
Query: 416 ALVGQSGSGKSTVISLIERFYD-----PQAGEVLIDGINLKE--FQLQWIRKKIGLVSQE 468
A++G SG GK+T++ I R D G++ G ++ + + RKK+G+V Q+
Sbjct: 33 AIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDVTEYRKKVGMVFQK 92
Query: 469 PVLFTGSIKDNIAYG------KDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQ 522
P F SI DN+A+G K + I V L AA + D++ ++ + GT+
Sbjct: 93 PTPFPMSIYDNVAFGPRIHGVKSKHKLDRI-VEESLKKAALW-DEVKSELN----KPGTR 146
Query: 523 LSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLS 582
LSGGQ+QR+ IARA+ +P ++LLDE TSALD + + +++ L+ + N T VIV H +
Sbjct: 147 LSGGQQQRLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELSENYTIVIVTHNIG 206
Query: 583 -TVRNADMIAVIHRGKIVEKGTHSKLVEDPE 612
+R AD IA ++RG+++E G ++VE P+
Sbjct: 207 QAIRIADYIAFMYRGELIEYGPTREIVERPK 237
|
Length = 250 |
| >gnl|CDD|130260 TIGR01192, chvA, glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Score = 134 bits (339), Expect = 1e-32
Identities = 129/478 (26%), Positives = 217/478 (45%), Gaps = 44/478 (9%)
Query: 704 EVPTRRLAYLN--KPEIPVILAGTIAAMANGVILPIYGLLISSVIETFFKPPHELKKDSR 761
+V R L+YLN K + +I+ I A + PI L +I+ K D
Sbjct: 5 QVYVRALSYLNVHKNRVLLIVIANITLAAITIAEPI---LFGRIIDAISS-----KSD-- 54
Query: 762 FWALIYLALGAGSFLLSPAQSYFFAVAGNKLIQRIRSM----CFEKVIHMEVSWFDEPEH 817
L LAL AG + + A ++L R+ F ++I M +SW +
Sbjct: 55 --VLPTLALWAGFGVFNTIAYVLVAREADRLAHGRRATLLTEAFGRIISMPLSWHQQ-RG 111
Query: 818 SSGAIGARLSADAASVRALVGDALARIVQNISTAAAGLII---AFTASWQLALIILVMLP 874
+S A+ L A L G L + Q+++T A ++ AF W+L+++++V+
Sbjct: 112 TSNALHTLLRA----TETLFGLWLEFMRQHLATFVALFLLIPTAFAMDWRLSIVLMVLGI 167
Query: 875 LIGVSGYTQMKFMKGFSADAKMKYEEASQVANDAVGSIRTVASF---CAEEKVMQLYKKK 931
L + M+ K A + Y + +D++ ++ V S+ AE ++ +
Sbjct: 168 LYILIAKLVMQRTKNGQAAVEHHYHNVFKHVSDSISNVSVVHSYNRIEAETSALKQFTNN 227
Query: 932 C-EAPMKTGIRQGMVSGGGFGASFFLLFAFYAASFYAGARLVEDGKATFSDVFKVFFSLT 990
A + SG AS + G LV G+ + +V F
Sbjct: 228 LLSAQYPVLDWWALASGLNRMASTISMMCI----LVIGTVLVIKGELSVGEVI-AFIGFA 282
Query: 991 MTAIG-ISQSSSFSSDSNKAKSAAASIFAIIDRESKIDPSDESGTI--LEDVKGEIELHH 1047
IG + Q S F + A A + D E + +E L +VKG +E H
Sbjct: 283 NLLIGRLDQMSGFI---TQIFEARAKLEDFFDLEDSVFQREEPADAPELPNVKGAVEFRH 339
Query: 1048 VSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGV 1107
++F++ + Q D++ + +AG+TVA+VG +G+GK+T+++LLQR YDP G I +DG+
Sbjct: 340 ITFEFAN--SSQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDGI 397
Query: 1108 EIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFI 1165
+I + + LR+ + V Q+ LFN +IR NI G+ AT+ E+ A++ A AH FI
Sbjct: 398 DINTVTRESLRKSIATVFQDAGLFNRSIRENIRLGR-EGATDEEVYEAAKAAAAHDFI 454
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 585 |
| >gnl|CDD|213219 cd03252, ABCC_Hemolysin, ATP-binding cassette domain of hemolysin B, subfamily C | Back alignment and domain information |
|---|
Score = 126 bits (318), Expect = 2e-32
Identities = 55/127 (43%), Positives = 81/127 (63%), Gaps = 4/127 (3%)
Query: 1043 IELHHVSFKYPSRPD-VQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGH 1101
I HV F+Y +PD + +++L+I+ G+ V +VG SGSGKST+ L+QRFY P+ G
Sbjct: 1 ITFEHVRFRY--KPDGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGR 58
Query: 1102 ITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANA 1161
+ +DG ++ WLR+Q+G+V QE VLFN +IR NIA G + E + A+++A A
Sbjct: 59 VLVDGHDLALADPAWLRRQVGVVLQENVLFNRSIRDNIALADPGMSME-RVIEAAKLAGA 117
Query: 1162 HKFICSL 1168
H FI L
Sbjct: 118 HDFISEL 124
|
The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. Length = 237 |
| >gnl|CDD|227590 COG5265, ATM1, ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 132 bits (334), Expect = 2e-32
Identities = 105/348 (30%), Positives = 173/348 (49%), Gaps = 30/348 (8%)
Query: 833 VRALVGDALARIVQNISTAAAGLIIAFTASWQLALIILVMLPLIGVSGYTQMKFMKGFSA 892
+R ++ + L +V+ A +I+ W AL LV + L + + F
Sbjct: 56 LRWILFNILPTLVEISLVA---VILWRVYGWWFALTTLVTVILYLLFTVIVSDWRTDFRR 112
Query: 893 DAKMKYEEASQVANDAVGSIRTVASFCAEE-------KVMQLYKKKCEAPMKTGIRQGMV 945
+A+ A D++ + TV F EE ++ Y+K A +K + ++
Sbjct: 113 LMNNADSDANAKAIDSLLNFETVKYFGNEEYEAVRYDHALETYEK---AAIKVHVSLLVL 169
Query: 946 SGGGFGASFFLLFAFY-AASFYAGARLVEDGKATFSDVFKV---FFSLTMTAIGISQSSS 1001
+ FG + +F+ A VE+G+ T D+ V F L++ + S
Sbjct: 170 N---FGQT--AIFSTGLRVMMTMSALGVEEGQLTVGDLVNVNALLFQLSIPLNFLGFSYR 224
Query: 1002 FSSDSNKAKSAAASIFAIIDRESKIDPSDESGTILEDVKGEIELHHVSFKY-PSRPDVQV 1060
+ +A + +F ++D E+++ + ++ + G + +VSF Y P RP +
Sbjct: 225 ---EIRQALTDMEKMFDLLDVEAEVSDAPDAPPLWPVRLGAVAFINVSFAYDPRRP---I 278
Query: 1061 FRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQ 1120
++ I GKTVA+VGESG+GKST++ LL RFYD ++G IT+DG +I+ + + LR+
Sbjct: 279 LNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSGSITIDGQDIRDVTQQSLRRA 338
Query: 1121 MGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSL 1168
+G+V Q+ VLFNDTI NI YG DAT E+ AA+E A H FI SL
Sbjct: 339 IGIVPQDTVLFNDTIAYNIKYG-RPDATAEEVGAAAEAAQIHDFIQSL 385
|
Length = 497 |
| >gnl|CDD|182692 PRK10744, pstB, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 126 bits (318), Expect = 3e-32
Identities = 82/252 (32%), Positives = 124/252 (49%), Gaps = 27/252 (10%)
Query: 376 ILDDIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERF 435
++ I++R++ F Y ++ I+ A +G SG GKST++ R
Sbjct: 6 MVATAPSKIQVRNLNFYYG---KFHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRM 62
Query: 436 YD--PQ---AGEVLIDGINL--KEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYG----- 483
Y+ P+ GE+L+DG N+ + + +R K+G+V Q+P F SI DNIA+G
Sbjct: 63 YELYPEQRAEGEILLDGENILTPKQDIALLRAKVGMVFQKPTPFPMSIYDNIAFGVRLFE 122
Query: 484 KDDATTEEIRVATELANAA---KFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKD 540
K + RV L AA + DKL Q G LSGGQ+QR+ IAR I
Sbjct: 123 KLSRAEMDERVEWALTKAALWNEVKDKLHQS--------GYSLSGGQQQRLCIARGIAIR 174
Query: 541 PRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRL-STVRNADMIAVIHRGKIV 599
P +LLLDE SALD S ++E + + + T VIV H + R +D A ++ G+++
Sbjct: 175 PEVLLLDEPCSALDPISTGRIEELITELKQDYTVVIVTHNMQQAARCSDYTAFMYLGELI 234
Query: 600 EKGTHSKLVEDP 611
E G + P
Sbjct: 235 EFGNTDTIFTKP 246
|
Length = 260 |
| >gnl|CDD|213212 cd03245, ABCC_bacteriocin_exporters, ATP-binding cassette domain of bacteriocin exporters, subfamily C | Back alignment and domain information |
|---|
Score = 123 bits (310), Expect = 1e-31
Identities = 50/125 (40%), Positives = 75/125 (60%), Gaps = 2/125 (1%)
Query: 1041 GEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAG 1100
G IE +VSF YP++ + +++L IRAG+ VA++G GSGKST++ LL Y P +G
Sbjct: 1 GRIEFRNVSFSYPNQEIPAL-DNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSG 59
Query: 1101 HITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMAN 1160
+ LDG +I++L LR+ +G V Q+ LF T+R NI G A + I A+E+A
Sbjct: 60 SVLLDGTDIRQLDPADLRRNIGYVPQDVTLFYGTLRDNITLG-APLADDERILRAAELAG 118
Query: 1161 AHKFI 1165
F+
Sbjct: 119 VTDFV 123
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. Length = 220 |
| >gnl|CDD|172733 PRK14245, PRK14245, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 123 bits (311), Expect = 2e-31
Identities = 90/248 (36%), Positives = 125/248 (50%), Gaps = 23/248 (9%)
Query: 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYD--PQA- 440
I+ RDV F Y + G S+ I + A +G SG GKST + L R D P
Sbjct: 4 IDARDVNFWYG---DFHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATR 60
Query: 441 --GEVLIDGINL--KEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYG------KDDATTE 490
GE+ IDG N+ K Q+ +RK +G+V Q P F SI +N+AYG KD+A
Sbjct: 61 LEGEIRIDGRNIYDKGVQVDELRKNVGMVFQRPNPFPKSIFENVAYGLRVNGVKDNAFIR 120
Query: 491 EIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEAT 550
+ RV L AA L + + E LSGGQ+QR+ IARA+ P +LL+DE
Sbjct: 121 Q-RVEETLKGAA-----LWDEVKDKLKESAFALSGGQQQRLCIARAMAVSPSVLLMDEPA 174
Query: 551 SALDAESEKVVQEALDRIMVNRTTVIVAHRL-STVRNADMIAVIHRGKIVEKGTHSKLVE 609
SALD S V+E + + + T VIV H + R +D A + G++VE K+
Sbjct: 175 SALDPISTAKVEELIHELKKDYTIVIVTHNMQQAARVSDKTAFFYMGEMVEYDDTKKIFT 234
Query: 610 DPEGAYSQ 617
+PE +Q
Sbjct: 235 NPEKEATQ 242
|
Length = 250 |
| >gnl|CDD|184586 PRK14240, PRK14240, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 123 bits (310), Expect = 3e-31
Identities = 84/244 (34%), Positives = 125/244 (51%), Gaps = 23/244 (9%)
Query: 382 GDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYD---- 437
G I ++D+ Y + Q ++ I AL+G SG GKST + + R D
Sbjct: 2 GKISVKDLDLFYG---DFQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPS 58
Query: 438 -PQAGEVLIDGINL--KEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYG------KDDAT 488
GEVL+DG ++ + + +RK++G+V Q+P F SI DN+AYG KD
Sbjct: 59 VKIEGEVLLDGQDIYKSDIDVNQLRKRVGMVFQQPNPFPMSIYDNVAYGPRTHGIKDKKK 118
Query: 489 TEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDE 548
+EI V L AA + D++ + + LSGGQ+QR+ IARA+ +P +LL+DE
Sbjct: 119 LDEI-VEKSLKGAALW-DEVKDRLK----KSALGLSGGQQQRLCIARALAVEPEVLLMDE 172
Query: 549 ATSALDAESEKVVQEALDRIMVNRTTVIVAHRL-STVRNADMIAVIHRGKIVEKGTHSKL 607
TSALD S ++E + + + T VIV H + R +D A G+IVE G L
Sbjct: 173 PTSALDPISTLKIEELIQELKKDYTIVIVTHNMQQASRISDKTAFFLNGEIVEFGDTVDL 232
Query: 608 VEDP 611
+P
Sbjct: 233 FTNP 236
|
Length = 250 |
| >gnl|CDD|237649 PRK14254, PRK14254, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 124 bits (313), Expect = 3e-31
Identities = 83/241 (34%), Positives = 124/241 (51%), Gaps = 20/241 (8%)
Query: 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYD-----P 438
IE RD+ Y +EQ S+ I A++G SG GKST + I R D
Sbjct: 40 IEARDLNVFYG---DEQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAAR 96
Query: 439 QAGEVLIDGINLKEFQLQ--WIRKKIGLVSQEPVLFTGSIKDNIAYG---KDDATTEEIR 493
GE+ G N+ + + +R++IG+V Q+P F SI DN+AYG + + R
Sbjct: 97 VEGELTFRGKNVYDADVDPVALRRRIGMVFQKPNPFPKSIYDNVAYGLKIQGYDGDIDER 156
Query: 494 VATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSAL 553
V L AA + D++ +D G LSGGQ+QR+ IARAI DP ++L+DE SAL
Sbjct: 157 VEESLRRAALW-DEVKDQLD----SSGLDLSGGQQQRLCIARAIAPDPEVILMDEPASAL 211
Query: 554 DAESEKVVQEALDRIMVNRTTVIVAHRL-STVRNADMIAV-IHRGKIVEKGTHSKLVEDP 611
D + +++ ++ + T VIV H + R +D AV + G++VE K+ E+P
Sbjct: 212 DPVATSKIEDLIEELAEEYTVVIVTHNMQQAARISDKTAVFLTGGELVEFDDTDKIFENP 271
Query: 612 E 612
E
Sbjct: 272 E 272
|
Length = 285 |
| >gnl|CDD|226967 COG4608, AppF, ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 123 bits (311), Expect = 3e-31
Identities = 68/248 (27%), Positives = 115/248 (46%), Gaps = 57/248 (22%)
Query: 384 IELRDVYFSYPARPNEQ------IFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYD 437
+E++++ +P G S SI G T LVG+SG GKST+ LI +
Sbjct: 5 LEVKNLKKYFPVGKGFGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEE 64
Query: 438 PQAGEVLIDGINL----KEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIR 493
P +GE+L +G ++ KE + + + + + V
Sbjct: 65 PTSGEILFEGKDITKLSKEERRERVLELLEKVGLPE------------------------ 100
Query: 494 VATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSAL 553
+F+ + P H +LSGGQ+QRI IARA+ +P++++ DE SAL
Sbjct: 101 ---------EFLYRYP---------H--ELSGGQRQRIGIARALALNPKLIVADEPVSAL 140
Query: 554 DAESE-KVVQEALD-RIMVNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVED 610
D + +++ D + + T + ++H LS VR +D IAV++ GKIVE G ++ +
Sbjct: 141 DVSVQAQILNLLKDLQEELGLTYLFISHDLSVVRYISDRIAVMYLGKIVEIGPTEEVFSN 200
Query: 611 PEGAYSQL 618
P Y++
Sbjct: 201 PLHPYTKA 208
|
Length = 268 |
| >gnl|CDD|233596 TIGR01846, type_I_sec_HlyB, type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Score = 130 bits (329), Expect = 5e-31
Identities = 106/418 (25%), Positives = 181/418 (43%), Gaps = 29/418 (6%)
Query: 764 ALIYLALGAGSFLLSPAQSYFFAVAGNKLIQRIRSMCFEKVIHMEVSWFDEPEHSSGAIG 823
AL LA+ L ++Y FA +++ + + + ++ + + +F+ G
Sbjct: 182 ALAMLAVAIFEPALGGLRTYLFAHLTSRIDVELGARLYRHLLGLPLGYFES--RRVGDTV 239
Query: 824 ARLSADAASVRALVGDALARIVQNISTAAAGLIIAFTASWQLALIILVMLPL-----IGV 878
AR+ L G AL ++ + L + F S L +++ L + V
Sbjct: 240 ARVRELEQIRNFLTGSALTVVLDLLFVVVF-LAVMFFYSPTLTGVVIGSLVCYALLSVFV 298
Query: 879 SGYTQMKFMKGFSADAKMKYEEASQVANDAVGSIRTVASFCAEEKVMQLYKKKCEAPMKT 938
+ + F A A+ ++V I T+ + E + + ++ A +
Sbjct: 299 GPILRKRVEDKFERSA-----AATSFLVESVTGIETIKATATEPQFQNRWDRQLAAYVAA 353
Query: 939 GIR-QGMVSGGGFGASFFLLFAFYAASFYAGARLVEDGKATFSDVFKVFFSLTMTAIGIS 997
R + + G F A + GA LV G + + + M A ++
Sbjct: 354 SFRVTNLGNIAGQAIELIQKLTF-AILLWFGAHLVIGGALSPGQLV----AFNMLAGRVT 408
Query: 998 QS----SSFSSDSNKAKSAAASIFAIIDRESKIDPSDESGTILEDVKGEIELHHVSFKYP 1053
Q + D + A + I++ S +P L +++G I ++ F+Y
Sbjct: 409 QPVLRLAQLWQDFQQTGIALERLGDILN--SPTEPRSAGLAALPELRGAITFENIRFRY- 465
Query: 1054 SRPDV-QVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKL 1112
PD +V +LNL I+ G+ + +VG SGSGKST+ LLQR Y P G + +DGV++
Sbjct: 466 -APDSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVDLAIA 524
Query: 1113 QLKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQ 1170
WLR+QMG+V QE VLF+ +IR NIA G A + A+++A AH FI L Q
Sbjct: 525 DPAWLRRQMGVVLQENVLFSRSIRDNIALCNPG-APFEHVIHAAKLAGAHDFISELPQ 581
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 694 |
| >gnl|CDD|213211 cd03244, ABCC_MRP_domain2, ATP-binding cassette domain 2 of multidrug resistance-associated protein | Back alignment and domain information |
|---|
Score = 121 bits (305), Expect = 8e-31
Identities = 47/130 (36%), Positives = 83/130 (63%), Gaps = 7/130 (5%)
Query: 1041 GEIELHHVSFKYPSRPDVQ-VFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDA 1099
G+IE +VS +Y RP++ V ++++ I+ G+ V +VG +GSGKS+++ L R + +
Sbjct: 1 GDIEFKNVSLRY--RPNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSS 58
Query: 1100 GHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIA-YGKGGDATEAEIQAASEM 1158
G I +DGV+I K+ L LR ++ ++ Q+PVLF+ TIR+N+ +G+ ++ E+ A E
Sbjct: 59 GSILIDGVDISKIGLHDLRSRISIIPQDPVLFSGTIRSNLDPFGE---YSDEELWQALER 115
Query: 1159 ANAHKFICSL 1168
+F+ SL
Sbjct: 116 VGLKEFVESL 125
|
The ABC subfamily C is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 221 |
| >gnl|CDD|237457 PRK13647, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 122 bits (309), Expect = 8e-31
Identities = 75/237 (31%), Positives = 123/237 (51%), Gaps = 23/237 (9%)
Query: 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 443
IE+ D++F Y + + G S+SI G+ AL+G +G+GKST++ + Y PQ G V
Sbjct: 5 IEVEDLHFRY--KDGTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRV 62
Query: 444 LIDGINLKEFQLQWIRKKIGLVSQEP--VLFTGSIKDNIAYG------KDDATTEEIRVA 495
+ G + +W+R K+GLV Q+P +F+ ++ D++A+G D + A
Sbjct: 63 KVMGREVNAENEKWVRSKVGLVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRVEEA 122
Query: 496 TELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDA 555
+ F DK P LS GQK+R+AIA + DP +++LDE + LD
Sbjct: 123 LKAVRMWDFRDKPPY-----------HLSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDP 171
Query: 556 ESEKVVQEALDRIMVNRTTVIVA-HRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVED 610
++ + E LDR+ TVIVA H + AD + V+ G+++ +G S L ++
Sbjct: 172 RGQETLMEILDRLHNQGKTVIVATHDVDLAAEWADQVIVLKEGRVLAEGDKSLLTDE 228
|
Length = 274 |
| >gnl|CDD|213267 cd03300, ABC_PotA_N, ATP-binding cassette domain of the polyamine transporter | Back alignment and domain information |
|---|
Score = 121 bits (305), Expect = 9e-31
Identities = 80/241 (33%), Positives = 123/241 (51%), Gaps = 30/241 (12%)
Query: 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 443
IEL +V Y G S+ I G L+G SG GK+T++ LI F P +GE+
Sbjct: 1 IELENVSKFYG---GFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEI 57
Query: 444 LIDGINLKEFQLQWIRKKIGLVSQEPVLFTG-SIKDNIAYG------KDDATTEEIRVAT 496
L+DG ++ L ++ + V Q LF ++ +NIA+G E + A
Sbjct: 58 LLDGKDIT--NLPPHKRPVNTVFQNYALFPHLTVFENIAFGLRLKKLPKAEIKERVAEAL 115
Query: 497 ELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAE 556
+L + ++ P QLSGGQ+QR+AIARA++ +P++LLLDE ALD +
Sbjct: 116 DLVQLEGYANRKPS-----------QLSGGQQQRVAIARALVNEPKVLLLDEPLGALDLK 164
Query: 557 SEKVVQEALDRI--MVNRTTVIVAHRLS---TVRNADMIAVIHRGKIVEKGTHSKLVEDP 611
K +Q L R+ + T V V H T+ +D IAV+++GKI + GT ++ E+P
Sbjct: 165 LRKDMQLELKRLQKELGITFVFVTHDQEEALTM--SDRIAVMNKGKIQQIGTPEEIYEEP 222
Query: 612 E 612
Sbjct: 223 A 223
|
PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 232 |
| >gnl|CDD|184582 PRK14236, PRK14236, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 122 bits (308), Expect = 9e-31
Identities = 81/246 (32%), Positives = 119/246 (48%), Gaps = 29/246 (11%)
Query: 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYD-----P 438
+E+R++ Y +Q S+ I A +G SG GKST++ R D
Sbjct: 26 LEVRNLNLFYGD---KQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCR 82
Query: 439 QAGEVLIDG--INLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYG------KDDATTE 490
GE+ +DG I K+ + +R+++G+V Q P F SI +N+ YG + +
Sbjct: 83 IEGEIRLDGQNIYDKKVDVAELRRRVGMVFQRPNPFPKSIYENVVYGLRLQGINNRRVLD 142
Query: 491 EIRVATELANAA---KFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLD 547
E V L AA + D+L E+ LSGGQ+QR+ IARAI +P +LLLD
Sbjct: 143 EA-VERSLRGAALWDEVKDRL--------HENAFGLSGGQQQRLVIARAIAIEPEVLLLD 193
Query: 548 EATSALDAESEKVVQEALDRIMVNRTTVIVAHRL-STVRNADMIAVIHRGKIVEKGTHSK 606
E TSALD S ++E + + T VIV H + R +D A ++ GK+VE G
Sbjct: 194 EPTSALDPISTLKIEELITELKSKYTIVIVTHNMQQAARVSDYTAFMYMGKLVEYGDTDT 253
Query: 607 LVEDPE 612
L P
Sbjct: 254 LFTSPA 259
|
Length = 272 |
| >gnl|CDD|237646 PRK14237, PRK14237, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 122 bits (307), Expect = 1e-30
Identities = 80/233 (34%), Positives = 110/233 (47%), Gaps = 27/233 (11%)
Query: 398 NEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQA-----GEVLIDG--INL 450
E I G + AL+G SGSGKST + + R D G++L G IN
Sbjct: 33 KEAIK-GIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINR 91
Query: 451 KEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYG------KDDATTEEIRVATELANAA-- 502
KE + +RK IG+V Q P F SI +NI + KD +EI V T L AA
Sbjct: 92 KEINVYEMRKHIGMVFQRPNPFAKSIYENITFALERAGVKDKKVLDEI-VETSLKQAALW 150
Query: 503 -KFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVV 561
+ D L + LSGGQ+QR+ IARAI P ILL+DE SALD S +
Sbjct: 151 DQVKDDL--------HKSALTLSGGQQQRLCIARAIAVKPDILLMDEPASALDPISTMQL 202
Query: 562 QEALDRIMVNRTTVIVAHRLS-TVRNADMIAVIHRGKIVEKGTHSKLVEDPEG 613
+E + + N T +IV H + R +D A + G ++E + +P+
Sbjct: 203 EETMFELKKNYTIIIVTHNMQQAARASDYTAFFYLGDLIEYDKTRNIFTNPKL 255
|
Length = 267 |
| >gnl|CDD|130041 TIGR00968, 3a0106s01, sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 120 bits (303), Expect = 2e-30
Identities = 73/222 (32%), Positives = 122/222 (54%), Gaps = 15/222 (6%)
Query: 400 QIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIR 459
Q ++ + +G+ AL+G SGSGKST++ +I P +G + ++G + +
Sbjct: 14 QALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHAR--D 71
Query: 460 KKIGLVSQEPVLFTG-SIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQ--GIDTLV 516
+KIG V Q LF +++DNIA+G EIR + A+ +++L + ++ L
Sbjct: 72 RKIGFVFQHYALFKHLTVRDNIAFGL------EIRKHPKAKIKAR-VEELLELVQLEGLG 124
Query: 517 GEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIM--VNRTT 574
+ QLSGGQ+QR+A+ARA+ +P++LLLDE ALDA+ K ++ L ++ V+ TT
Sbjct: 125 DRYPNQLSGGQRQRVALARALAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTT 184
Query: 575 VIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVEDPEGAY 615
V V H AD I V+ GKI + G+ ++ + P +
Sbjct: 185 VFVTHDQEEAMEVADRIVVMSNGKIEQIGSPDEVYDHPANPF 226
|
[Transport and binding proteins, Anions]. Length = 237 |
| >gnl|CDD|213193 cd03226, ABC_cobalt_CbiO_domain2, Second domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 119 bits (300), Expect = 2e-30
Identities = 58/196 (29%), Positives = 96/196 (48%), Gaps = 16/196 (8%)
Query: 385 ELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVL 444
+ ++ FSY + +I S+ + +G AL G++G+GK+T+ ++ +G +L
Sbjct: 1 RIENISFSY--KKGTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSIL 58
Query: 445 IDGINLKEFQLQWIRKKIGLVSQEP--VLFTGSIKDNIAYGKDDATTEEIRVATELANAA 502
++G +K + RK IG V Q+ LFT S+++ + G + + T L
Sbjct: 59 LNGKPIKAKER---RKSIGYVMQDVDYQLFTDSVREELLLGLKELDAGNEQAETVL---- 111
Query: 503 KFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQ 562
L + L H LSGGQKQR+AIA A+L +L+ DE TS LD ++ + V
Sbjct: 112 ---KDL--DLYALKERHPLSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVG 166
Query: 563 EALDRIMVNRTTVIVA 578
E + + VIV
Sbjct: 167 ELIRELAAQGKAVIVI 182
|
Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 205 |
| >gnl|CDD|237645 PRK14235, PRK14235, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 120 bits (304), Expect = 2e-30
Identities = 83/247 (33%), Positives = 123/247 (49%), Gaps = 30/247 (12%)
Query: 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQA--- 440
+ RDV Y + +F + I T A +G SG GKST + + R D
Sbjct: 20 MRARDVSVFYGE--KQALF-DVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCR 76
Query: 441 --GEVLIDGINLKEFQLQWI--RKKIGLVSQEPVLFTGSIKDNIAYG-------KDDATT 489
G++ +DG ++ + +L + R ++G+V Q+P F SI +N+AYG + A
Sbjct: 77 VTGKITLDGEDIYDPRLDVVELRARVGMVFQKPNPFPKSIYENVAYGPRIHGLARSKAEL 136
Query: 490 EEIRVATELANAAKF---IDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLL 546
+EI V T L A + D+L E GT LSGGQ+QR+ IARAI P ++L+
Sbjct: 137 DEI-VETSLRKAGLWEEVKDRL--------HEPGTGLSGGQQQRLCIARAIAVSPEVILM 187
Query: 547 DEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLS-TVRNADMIAVIHRGKIVEKGTHS 605
DE SALD + V+E +D + N T VIV H + R + A H G +VE G
Sbjct: 188 DEPCSALDPIATAKVEELIDELRQNYTIVIVTHSMQQAARVSQRTAFFHLGNLVEVGDTE 247
Query: 606 KLVEDPE 612
K+ +P+
Sbjct: 248 KMFTNPD 254
|
Length = 267 |
| >gnl|CDD|227320 COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 127 bits (321), Expect = 3e-30
Identities = 83/361 (22%), Positives = 135/361 (37%), Gaps = 41/361 (11%)
Query: 838 GDALARIVQNIST------------AAAGLIIAFTA------SWQLAL----IILVMLPL 875
GD L R+V ++ A ++IA S LAL I+L++L +
Sbjct: 115 GDLLNRLVADVDALDNLYLRVIAPAVVALVLIAVVTIGLSFFSIPLALLLGLILLLLLLI 174
Query: 876 IGVSGYTQMKFMKGFSADAKMKYEEASQVANDAVGSIRTVASFCAEEKVMQLYKKKCEAP 935
I Y + + F A D V + F AE+ + +
Sbjct: 175 IPTLFY---RAGRKFGAHLAQGRAALRSQFTDWVQGQAELLIFGAEDAYRTALEATEASW 231
Query: 936 MKTGIRQGMVSG-GGFGASFFLLFAFYAASFYAGARLVEDGKATFSDVF-KVFFSLTMTA 993
+K +Q +G + A V G +
Sbjct: 232 LKAQRKQARFTGLSDAILLLIAGLLVIGLLLWMAA-QVGAGALAQPGAALALLVIFAALE 290
Query: 994 IGISQSSSFSSDSNKAKS----AAASIFAIIDRESKIDPSDESGTILEDVKGEIELHHVS 1049
+F + A AS + D + +EL +VS
Sbjct: 291 -------AFEPLAPGAFQHLGQVIASARRLNDILDQKPEVTFPDEQTATTGQALELRNVS 343
Query: 1050 FKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEI 1109
F YP + + ++ NL + G+ VA++G SGSGKST++ LL +DP G ITL+GVEI
Sbjct: 344 FTYPGQQ-TKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGSITLNGVEI 402
Query: 1110 QKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQ 1169
L + LR+ + +++Q LF+ T+R N+ DA++ E+ AA + K + S
Sbjct: 403 ASLDEQALRETISVLTQRVHLFSGTLRDNLRLAN-PDASDEELWAALQQVGLEKLLESAP 461
Query: 1170 Q 1170
Sbjct: 462 D 462
|
Length = 573 |
| >gnl|CDD|130254 TIGR01186, proV, glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Score = 123 bits (310), Expect = 3e-30
Identities = 70/224 (31%), Positives = 119/224 (53%), Gaps = 25/224 (11%)
Query: 406 SISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEF---QLQWI-RKK 461
++I+ G ++G SGSGKST + ++ R +P AG++ IDG N+ + +L+ + RKK
Sbjct: 13 DLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKK 72
Query: 462 IGLVSQEPVLFTG-SIKDNIAYG------KDDATTEEIRVATELANAAKFIDKLPQGIDT 514
IG+V Q+ LF +I N + G + E+ +L ++ + P
Sbjct: 73 IGMVFQQFALFPHMTILQNTSLGPELLGWPEQERKEKALELLKLVGLEEYEHRYPD---- 128
Query: 515 LVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIM--VNR 572
+LSGG +QR+ +ARA+ +P ILL+DEA SALD +Q+ L ++ + +
Sbjct: 129 -------ELSGGMQQRVGLARALAAEPDILLMDEAFSALDPLIRDSMQDELKKLQATLQK 181
Query: 573 TTVIVAHRL-STVRNADMIAVIHRGKIVEKGTHSKLVEDPEGAY 615
T V + H L +R D I ++ G+IV+ GT +++ +P Y
Sbjct: 182 TIVFITHDLDEAIRIGDRIVIMKAGEIVQVGTPDEILRNPANEY 225
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lactis functionally complements an E.coli proU mutant. The comlementing locus is similar to a opuA locus in B.sutlis. This clarifies the differences in nomenclature [Transport and binding proteins, Amino acids, peptides and amines]. Length = 363 |
| >gnl|CDD|213223 cd03256, ABC_PhnC_transporter, ATP-binding cassette domain of the binding protein-dependent phosphonate transport system | Back alignment and domain information |
|---|
Score = 119 bits (300), Expect = 5e-30
Identities = 74/245 (30%), Positives = 130/245 (53%), Gaps = 28/245 (11%)
Query: 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 443
IE+ ++ +YP ++ S+SI+ G AL+G SG+GKST++ + +P +G V
Sbjct: 1 IEVENLSKTYPN--GKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSV 58
Query: 444 LIDGI---NLKEFQLQWIRKKIGLVSQEPVLFTG-SIKDNIAYGKDDATT---------- 489
LIDG LK L+ +R++IG++ Q+ L S+ +N+ G+ +
Sbjct: 59 LIDGTDINKLKGKALRQLRRQIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFP 118
Query: 490 -EEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDE 548
EE + A ++++ G+ + QLSGGQ+QR+AIARA+++ P+++L DE
Sbjct: 119 KEEKQRALAA------LERV--GLLDKAYQRADQLSGGQQQRVAIARALMQQPKLILADE 170
Query: 549 ATSALDAESEKVVQEALDRI--MVNRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKGTHS 605
++LD S + V + L RI T ++ H++ R AD I + G+IV G +
Sbjct: 171 PVASLDPASSRQVMDLLKRINREEGITVIVSLHQVDLAREYADRIVGLKDGRIVFDGPPA 230
Query: 606 KLVED 610
+L ++
Sbjct: 231 ELTDE 235
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 241 |
| >gnl|CDD|226164 COG3638, COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 119 bits (301), Expect = 5e-30
Identities = 74/249 (29%), Positives = 125/249 (50%), Gaps = 36/249 (14%)
Query: 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 443
IE++++ +YP Q ++ I+ G A++G SG+GKST++ + DP +GE+
Sbjct: 4 IEVKNLSKTYPG--GHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEI 61
Query: 444 LIDG---INLKEFQLQWIRKKIGLVSQEPVLFTGSIKD-----NIAYGKDDATT------ 489
L +G LK +L+ +R+ IG++ Q+ L + N+ G+ T+
Sbjct: 62 LFNGVQITKLKGKELRKLRRDIGMIFQQFNL----VPRLSVLENVLLGRLGYTSTWRSLF 117
Query: 490 -----EEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRIL 544
E+ A + +DK Q T LSGGQ+QR+AIARA+++ P+I+
Sbjct: 118 GLFSKEDKAQALDALERVGILDKAYQRAST--------LSGGQQQRVAIARALVQQPKII 169
Query: 545 LLDEATSALDAESEKVVQEALDRIMVNR--TTVIVAHRLSTVRN-ADMIAVIHRGKIVEK 601
L DE ++LD ES K V + L I T ++ H++ + AD I + G+IV
Sbjct: 170 LADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDLAKKYADRIIGLKAGRIVFD 229
Query: 602 GTHSKLVED 610
G S+L ++
Sbjct: 230 GPASELTDE 238
|
Length = 258 |
| >gnl|CDD|224043 COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 122 bits (307), Expect = 6e-30
Identities = 76/230 (33%), Positives = 120/230 (52%), Gaps = 21/230 (9%)
Query: 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 443
I + +V + A S+ I SG AL+G SG+GKST++ +I P AG +
Sbjct: 3 IRINNVKKRFGAFG---ALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRI 59
Query: 444 LIDGINLKEFQLQWIRK-KIGLVSQEPVLFTG-SIKDNIAYG----KDDATTEEIRV-AT 496
++G L + +R K+G V Q LF ++ DNIA+G K+ + EIR
Sbjct: 60 RLNGRVLFDVSNLAVRDRKVGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVE 119
Query: 497 ELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAE 556
EL + ++ L + QLSGGQ+QR+A+ARA+ +P++LLLDE ALDA+
Sbjct: 120 ELLRLVQ--------LEGLADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAK 171
Query: 557 SEKVVQEALDRIM--VNRTTVIVAHRLS-TVRNADMIAVIHRGKIVEKGT 603
K ++ L ++ + TTV V H + AD + V+++G+I + G
Sbjct: 172 VRKELRRWLRKLHDRLGVTTVFVTHDQEEALELADRVVVLNQGRIEQVGP 221
|
Length = 345 |
| >gnl|CDD|226643 COG4175, ProV, ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 122 bits (307), Expect = 1e-29
Identities = 86/287 (29%), Positives = 133/287 (46%), Gaps = 58/287 (20%)
Query: 347 FGAGQAAAFKMFETINRKPEIDAYDTKGKILDDIRGDIELRDVYFSYPARPNEQIFSGFS 406
FG A K+ +D +K +IL + + D S
Sbjct: 14 FGKNPKRALKL---------LDQGKSKAEILKKTGLVVGVNDA----------------S 48
Query: 407 ISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGIN--------LKEFQLQWI 458
+ + G ++G SGSGKST++ L+ R +P GE+L+DG + L+E +
Sbjct: 49 LDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRGEILVDGKDIAKLSAAELRELR---- 104
Query: 459 RKKIGLVSQEPVLFTG-SIKDNIAY-----GKDDATTEEI-RVATELANAAKFIDKLPQG 511
RKKI +V Q L ++ +N+A+ G A EE A EL + DK P
Sbjct: 105 RKKISMVFQSFALLPHRTVLENVAFGLEVQGVPKAEREERALEALELVGLEGYADKYP-- 162
Query: 512 IDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRI--M 569
+LSGG +QR+ +ARA+ DP ILL+DEA SALD +Q+ L +
Sbjct: 163 ---------NELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQAK 213
Query: 570 VNRTTVIVAHRLS-TVRNADMIAVIHRGKIVEKGTHSKLVEDPEGAY 615
+ +T V + H L +R D IA++ G+IV+ GT +++ +P Y
Sbjct: 214 LKKTIVFITHDLDEALRIGDRIAIMKDGEIVQVGTPEEILLNPANDY 260
|
Length = 386 |
| >gnl|CDD|172757 PRK14269, PRK14269, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 118 bits (297), Expect = 1e-29
Identities = 81/230 (35%), Positives = 117/230 (50%), Gaps = 27/230 (11%)
Query: 399 EQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQA---GEVLIDGINLKEFQL 455
+Q ++ I AL+G SG GKST + R D A G V I+G ++K +
Sbjct: 15 KQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDV 74
Query: 456 QWIRKKIGLVSQEPVLFTGSIKDNIAYG---------KDDATTEEIRVATELANAAKF-- 504
+RK +G+V Q+P +F SI +NI+Y KD+ EE V L F
Sbjct: 75 VALRKNVGMVFQQPNVFVKSIYENISYAPKLHGMIKNKDE---EEALVVDCLQKVGLFEE 131
Query: 505 -IDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQE 563
DKL Q + LSGGQ+QR+ IARA+ P++LLLDE TSALD S V++E
Sbjct: 132 VKDKLKQ--------NALALSGGQQQRLCIARALAIKPKLLLLDEPTSALDPISSGVIEE 183
Query: 564 ALDRIMVNRTTVIVAHRLST-VRNADMIAVIHRGKIVEKGTHSKLVEDPE 612
L + N + ++V H + R AD A H G+++E G + E+P+
Sbjct: 184 LLKELSHNLSMIMVTHNMQQGKRVADYTAFFHLGELIEFGESKEFFENPK 233
|
Length = 246 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 124 bits (313), Expect = 2e-29
Identities = 80/311 (25%), Positives = 140/311 (45%), Gaps = 49/311 (15%)
Query: 403 SGFSISISSGTTAALVGQSGSGKST----VISLIERFYDPQAGEVLIDGIN---LKEFQL 455
S + G +VG+SGSGKST ++ L+ +GEV++DG + L E ++
Sbjct: 26 RDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSEREM 85
Query: 456 QWIR-KKIGLVSQEPV-----LFTGSIKDNIA--------YGKDDATTEEIRV--ATELA 499
+ +R K+I ++ Q+P+ + T I D I + +A + + L
Sbjct: 86 RKLRGKRIAMIFQDPMTSLNPVMT--IGDQIREALRLHGKGSRAEARKRAVELLEQVGLP 143
Query: 500 NAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEK 559
+ + D+ P QLSGG +QR+ IA A+ P++L+ DE T+ALD ++
Sbjct: 144 DPER-RDRYPH-----------QLSGGMRQRVMIAMALALKPKLLIADEPTTALDVTTQA 191
Query: 560 VVQEALDRIMV--NRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVEDPEGAYS 616
+ + L + + + H L V AD + V+++G+IVE G +++ +P+ Y+
Sbjct: 192 QILDLLKDLQRELGMAVLFITHDLGVVAELADRVVVMYKGEIVETGPTEEILSNPQHPYT 251
Query: 617 QLIRLQEA--NKESEQTIDGQRKSEISMESL---RHSSHRMSLRRSISRGSSIGNSSRHS 671
+ L A E+ I R+ + E L R+ S R R+ +
Sbjct: 252 R--GLLAAVPRLGDEKIIRLPRRGPLRAEPLLSVRNLSKRYGSRK--GLFVRERGEVKAV 307
Query: 672 ISVSFGLPSGQ 682
VSF L G+
Sbjct: 308 DDVSFDLREGE 318
|
Length = 539 |
| >gnl|CDD|213264 cd03297, ABC_ModC_molybdenum_transporter, ATP-binding cassette domain of the molybdenum transport system | Back alignment and domain information |
|---|
Score = 116 bits (293), Expect = 2e-29
Identities = 67/212 (31%), Positives = 109/212 (51%), Gaps = 18/212 (8%)
Query: 402 FSGFSISIS---SGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWI 458
F++ I + + G SG+GKST++ I P G ++++G L + + +
Sbjct: 10 LPDFTLKIDFDLNEEVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKIN 69
Query: 459 ----RKKIGLVSQEPVLFTG-SIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGID 513
++KIGLV Q+ LF ++++N+A+G E R++ + +D L G+D
Sbjct: 70 LPPQQRKIGLVFQQYALFPHLNVRENLAFGLKRKRNREDRIS-----VDELLDLL--GLD 122
Query: 514 TLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIM--VN 571
L+ + QLSGG+KQR+A+ARA+ P +LLLDE SALD + L +I +N
Sbjct: 123 HLLNRYPAQLSGGEKQRVALARALAAQPELLLLDEPFSALDRALRLQLLPELKQIKKNLN 182
Query: 572 RTTVIVAHRLSTV-RNADMIAVIHRGKIVEKG 602
+ V H LS AD I V+ G++ G
Sbjct: 183 IPVIFVTHDLSEAEYLADRIVVMEDGRLQYIG 214
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 214 |
| >gnl|CDD|224046 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 118 bits (297), Expect = 2e-29
Identities = 67/232 (28%), Positives = 112/232 (48%), Gaps = 36/232 (15%)
Query: 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 443
IE+ ++ SY RP + S+S+ G AL+G +G+GKST++ I P +GE+
Sbjct: 5 IEVENLTVSYGNRP---VLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEI 61
Query: 444 LIDGINLKEFQLQWIRKKIGLVSQEPVL---FTGSIKDNIA------------YGKDDAT 488
I G +++ + R +IG V Q+ + F ++KD + K D
Sbjct: 62 KIFGKPVRKRRK---RLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKD-- 116
Query: 489 TEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDE 548
E++ A E D+ +GE LSGGQKQR+ +ARA+ ++P +LLLDE
Sbjct: 117 KEKVDEALERVGMEDLRDRQ-------IGE----LSGGQKQRVLLARALAQNPDLLLLDE 165
Query: 549 ATSALDAESEKVVQEALDRI-MVNRTTVIVAHRLSTVR-NADMIAVIHRGKI 598
+ +D +K + + L + +T ++V H L V D + ++R I
Sbjct: 166 PFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLGLVMAYFDRVICLNRHLI 217
|
Length = 254 |
| >gnl|CDD|213259 cd03292, ABC_FtsE_transporter, ATP-binding cassette domain of the cell division transporter | Back alignment and domain information |
|---|
Score = 116 bits (293), Expect = 2e-29
Identities = 70/205 (34%), Positives = 109/205 (53%), Gaps = 23/205 (11%)
Query: 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 443
IE +V +YP G +ISIS+G LVG SG+GKST++ LI + P +G +
Sbjct: 1 IEFINVTKTYP--NGTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTI 58
Query: 444 LIDGI---NLKEFQLQWIRKKIGLVSQE-PVLFTGSIKDNIAYGKD--DATTEEIR---- 493
++G +L+ + ++R+KIG+V Q+ +L ++ +N+A+ + EIR
Sbjct: 59 RVNGQDVSDLRGRAIPYLRRKIGVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRKRVP 118
Query: 494 VATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSAL 553
A EL + LP +LSGG++QR+AIARAI+ P IL+ DE T L
Sbjct: 119 AALELVGLSHKHRALPA-----------ELSGGEQQRVAIARAIVNSPTILIADEPTGNL 167
Query: 554 DAESEKVVQEALDRIMVNRTTVIVA 578
D ++ + L +I TTV+VA
Sbjct: 168 DPDTTWEIMNLLKKINKAGTTVVVA 192
|
FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. Length = 214 |
| >gnl|CDD|213263 cd03296, ABC_CysA_sulfate_importer, ATP-binding cassette domain of the sulfate transporter | Back alignment and domain information |
|---|
Score = 117 bits (295), Expect = 2e-29
Identities = 72/219 (32%), Positives = 120/219 (54%), Gaps = 17/219 (7%)
Query: 406 SISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLV 465
S+ I SG AL+G SGSGK+T++ LI P +G +L G + + +Q + +G V
Sbjct: 22 SLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPVQ--ERNVGFV 79
Query: 466 SQEPVLFTG-SIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQ-----GIDTLVGEH 519
Q LF ++ DN+A+G ++ +E A+ K+ + +D L +
Sbjct: 80 FQHYALFRHMTVFDNVAFGL------RVKPRSERPPEAEIRAKVHELLKLVQLDWLADRY 133
Query: 520 GTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIM--VNRTTVIV 577
QLSGGQ+QR+A+ARA+ +P++LLLDE ALDA+ K ++ L R+ ++ TTV V
Sbjct: 134 PAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFV 193
Query: 578 AHRLS-TVRNADMIAVIHRGKIVEKGTHSKLVEDPEGAY 615
H + AD + V+++G+I + GT ++ + P +
Sbjct: 194 THDQEEALEVADRVVVMNKGRIEQVGTPDEVYDHPASPF 232
|
Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 239 |
| >gnl|CDD|162242 TIGR01187, potA, spermidine/putrescine ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 119 bits (300), Expect = 4e-29
Identities = 69/210 (32%), Positives = 110/210 (52%), Gaps = 23/210 (10%)
Query: 417 LVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTG-S 475
L+G SG GK+T++ L+ F P +G +++DG ++ + I +V Q LF +
Sbjct: 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVPPH--LRHINMVFQSYALFPHMT 58
Query: 476 IKDNIAYG----KDDATTEEIRV--ATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQ 529
+++N+A+G K + RV A L +F D+ P QLSGGQ+Q
Sbjct: 59 VEENVAFGLKMRKVPRAEIKPRVLEALRLVQLEEFADRKP-----------HQLSGGQQQ 107
Query: 530 RIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIM--VNRTTVIVAHRLS-TVRN 586
R+A+ARA++ P+ILLLDE SALD + +Q L I + T V V H +
Sbjct: 108 RVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQLGITFVFVTHDQEEAMTM 167
Query: 587 ADMIAVIHRGKIVEKGTHSKLVEDPEGAYS 616
+D IA++ +GKI + GT ++ E+P +
Sbjct: 168 SDRIAIMRKGKIAQIGTPEEIYEEPANLFV 197
|
This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included) [Transport and binding proteins, Amino acids, peptides and amines]. Length = 325 |
| >gnl|CDD|213202 cd03235, ABC_Metallic_Cations, ATP-binding cassette domain of the metal-type transporters | Back alignment and domain information |
|---|
Score = 116 bits (292), Expect = 4e-29
Identities = 62/231 (26%), Positives = 109/231 (47%), Gaps = 38/231 (16%)
Query: 385 ELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVL 444
E+ D+ SY P + S + G A+VG +G+GKST++ I P +G +
Sbjct: 1 EVEDLTVSYGGHP---VLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIR 57
Query: 445 IDGINLKEFQLQWIRKKIGLVSQEPVL---FTGSIKDNIA------------YGKDDATT 489
+ G L++ RK+IG V Q + F S++D + K D
Sbjct: 58 VFGKPLEKE-----RKRIGYVPQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADK-- 110
Query: 490 EEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEA 549
++ A E ++ D+ I +LSGGQ+QR+ +ARA+++DP +LLLDE
Sbjct: 111 AKVDEALERVGLSELADRQ---IG--------ELSGGQQQRVLLARALVQDPDLLLLDEP 159
Query: 550 TSALDAESEKVVQEALDRI-MVNRTTVIVAHRLSTV-RNADMIAVIHRGKI 598
+ +D ++++ + E L + T ++V H L V D + +++R +
Sbjct: 160 FAGVDPKTQEDIYELLRELRREGMTILVVTHDLGLVLEYFDRVLLLNRTVV 210
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. Length = 213 |
| >gnl|CDD|237455 PRK13637, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 117 bits (296), Expect = 5e-29
Identities = 74/216 (34%), Positives = 119/216 (55%), Gaps = 32/216 (14%)
Query: 406 SISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINL--KEFQLQWIRKKIG 463
+I I G L+G +GSGKST+I + P +G+++IDG+++ K+ +L IRKK+G
Sbjct: 27 NIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDIRKKVG 86
Query: 464 LVSQEP--VLFTGSIKDNIAYG------KDDATTEEIRVATELA--NAAKFIDKLPQGID 513
LV Q P LF +I+ +IA+G ++ ++ A + + + DK P
Sbjct: 87 LVFQYPEYQLFEETIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLDYEDYKDKSP---- 142
Query: 514 TLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIM---- 569
+LSGGQK+R+AIA + +P+IL+LDE T+ LD K E L++I
Sbjct: 143 -------FELSGGQKRRVAIAGVVAMEPKILILDEPTAGLDP---KGRDEILNKIKELHK 192
Query: 570 -VNRTTVIVAHRLSTV-RNADMIAVIHRGKIVEKGT 603
N T ++V+H + V + AD I V+++GK +GT
Sbjct: 193 EYNMTIILVSHSMEDVAKLADRIIVMNKGKCELQGT 228
|
Length = 287 |
| >gnl|CDD|172732 PRK14244, PRK14244, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 116 bits (292), Expect = 7e-29
Identities = 74/232 (31%), Positives = 116/232 (50%), Gaps = 27/232 (11%)
Query: 399 EQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYD-----PQAGEVLIDGINL--K 451
+QI ++ I A +G SG GKST + R D GE+ IDGI++
Sbjct: 18 KQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSV 77
Query: 452 EFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQG 511
+ + +R K+G+V Q+P F SI DN+AYG LA K +D++ +
Sbjct: 78 DTNVVLLRAKVGMVFQKPNPFPKSIYDNVAYGPK---------LHGLAKNKKKLDEIVEK 128
Query: 512 IDTLVG----------EHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVV 561
T VG + +LSGGQ+QR+ IARAI P +LL+DE SALD + V+
Sbjct: 129 SLTSVGLWEELGDRLKDSAFELSGGQQQRLCIARAIAVKPTMLLMDEPCSALDPVATNVI 188
Query: 562 QEALDRIMVNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVEDPE 612
+ + + N T ++V H + + +D +A G+IVE T ++ ++P+
Sbjct: 189 ENLIQELKKNFTIIVVTHSMKQAKKVSDRVAFFQSGRIVEYNTTQEIFKNPQ 240
|
Length = 251 |
| >gnl|CDD|184597 PRK14270, PRK14270, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 115 bits (290), Expect = 1e-28
Identities = 80/251 (31%), Positives = 124/251 (49%), Gaps = 32/251 (12%)
Query: 399 EQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYD-----PQAGEVLIDGINL--K 451
+Q + ++ I AL+G SG GKST + + R D GEVL+DG N+ K
Sbjct: 17 KQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDK 76
Query: 452 EFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYG------KDDATTEEIRVATELANAAKFI 505
+ + +RK++G+V Q+P F SI DN+AYG KD ++I V L AA +
Sbjct: 77 DVDVVELRKRVGMVFQKPNPFPMSIYDNVAYGPRIHGIKDKKELDKI-VEWALKKAALWD 135
Query: 506 DKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEAL 565
+ + + + +LSGGQ+QR+ IAR I P ++L+DE TSALD S +++ +
Sbjct: 136 E-----VKDDLKKSALKLSGGQQQRLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLM 190
Query: 566 DRIMVNRTTVIVAHRLSTV-RNADMIAVIHRGKIVEKGTHSKLVEDPEGAYSQLIRLQEA 624
+ T VIV H + R +D A G ++E K+ +P+
Sbjct: 191 VELKKEYTIVIVTHNMQQASRVSDYTAFFLMGDLIEFNKTEKIFLEPQ------------ 238
Query: 625 NKESEQTIDGQ 635
KE+E I G+
Sbjct: 239 KKETEDYISGR 249
|
Length = 251 |
| >gnl|CDD|184209 PRK13650, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 116 bits (293), Expect = 1e-28
Identities = 74/228 (32%), Positives = 121/228 (53%), Gaps = 27/228 (11%)
Query: 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 443
IE++++ F Y + + S + G +++G +GSGKST + LI+ + ++G++
Sbjct: 5 IEVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQI 64
Query: 444 LIDGINLKEFQLQWIRKKIGLVSQEP-VLFTG-SIKDNIAYGKD------DATTEEIRVA 495
+IDG L E + IR KIG+V Q P F G +++D++A+G + + E + A
Sbjct: 65 IIDGDLLTEENVWDIRHKIGMVFQNPDNQFVGATVEDDVAFGLENKGIPHEEMKERVNEA 124
Query: 496 TELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDA 555
EL F ++ P +LSGGQKQR+AIA A+ P+I++LDEATS LD
Sbjct: 125 LELVGMQDFKEREP-----------ARLSGGQKQRVAIAGAVAMRPKIIILDEATSMLDP 173
Query: 556 ESE----KVVQEALDRIMVNRTTVI-VAHRLSTVRNADMIAVIHRGKI 598
E K ++ D + TVI + H L V +D + V+ G++
Sbjct: 174 EGRLELIKTIKGIRDD---YQMTVISITHDLDEVALSDRVLVMKNGQV 218
|
Length = 279 |
| >gnl|CDD|226360 COG3840, ThiQ, ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 115 bits (289), Expect = 1e-28
Identities = 73/239 (30%), Positives = 116/239 (48%), Gaps = 34/239 (14%)
Query: 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGE 442
+ L DV FSY P F +++ +G A++G SG+GKST+++LI F P +GE
Sbjct: 1 MLALDDVRFSYGHLPMR-----FDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGE 55
Query: 443 VLIDGINLKEFQLQWIRKKIGLVSQEPVLFTG-SIKDNIAYGKDDAT--TEEIRVATELA 499
+LI+G++ + + ++ QE LF ++ NI G E R E A
Sbjct: 56 ILINGVDHT--ASPPAERPVSMLFQENNLFAHLTVAQNIGLGLSPGLKLNAEQREKVEAA 113
Query: 500 NA----AKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDA 555
A A F+ +LP +LSGGQ+QR+A+AR ++++ ILLLDE SALD
Sbjct: 114 AAQVGLAGFLKRLP-----------GELSGGQRQRVALARCLVREQPILLLDEPFSALD- 161
Query: 556 ESEKVVQEALDRIM-----VNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLV 608
+ E L + T ++V H AD + + G+I +G+ +L+
Sbjct: 162 --PALRAEMLALVSQLCDERKMTLLMVTHHPEDAARIADRVVFLDNGRIAAQGSTQELL 218
|
Length = 231 |
| >gnl|CDD|184594 PRK14264, PRK14264, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 117 bits (294), Expect = 1e-28
Identities = 77/256 (30%), Positives = 123/256 (48%), Gaps = 46/256 (17%)
Query: 388 DVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAG------ 441
DVY+ ++ G S+ I + AL+G SG GKST + + R D
Sbjct: 52 DVYYG-----DDHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGS 106
Query: 442 ------EVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYG------------ 483
++ DG+NL E +RK++G+V Q P F SI++NI+YG
Sbjct: 107 VELDGQDIYQDGVNLVE-----LRKRVGMVFQSPNPFPKSIRENISYGPRKHGDINTGLL 161
Query: 484 -----KDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAIL 538
+DD E+ V L AA L ++ + ++ LSGGQ+QR+ IAR +
Sbjct: 162 ARLLGRDDKDAEDELVERSLRQAA-----LWDEVNDRLDDNALGLSGGQQQRLCIARCLA 216
Query: 539 KDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRL-STVRNADMIAV-IHRG 596
DP ++L+DE SALD + +++ ++ + T V+V H + R +D AV + G
Sbjct: 217 VDPEVILMDEPASALDPIATSKIEDLIEELAEEYTVVVVTHNMQQAARISDQTAVFLTGG 276
Query: 597 KIVEKGTHSKLVEDPE 612
++VE K+ E+PE
Sbjct: 277 ELVEYDDTDKIFENPE 292
|
Length = 305 |
| >gnl|CDD|215650 pfam00005, ABC_tran, ABC transporter | Back alignment and domain information |
|---|
Score = 110 bits (278), Expect = 1e-28
Identities = 47/129 (36%), Positives = 71/129 (55%), Gaps = 13/129 (10%)
Query: 426 STVISLIERFYDPQAGEVLIDGINLKEF-QLQWIRKKIGLVSQEPVLF-TGSIKDNIAYG 483
ST++ LI P +G +L+DG + + +RK+IG+V Q+P LF ++++N+ +G
Sbjct: 1 STLLKLITGLLQPTSGTILLDGEDGTGLSSRKLLRKRIGVVFQDPQLFPELTVRENLFFG 60
Query: 484 KD-DATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPR 542
A E F+D+ P LSGGQKQR+AIARA+LK P+
Sbjct: 61 LRDKEADARAEEALERVGLPDFLDREP----------VGTLSGGQKQRVAIARALLKKPK 110
Query: 543 ILLLDEATS 551
+LLLDE T+
Sbjct: 111 LLLLDEPTA 119
|
ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide as in human CFTR, or belong in different polypeptide chains. Length = 119 |
| >gnl|CDD|188394 TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Score = 114 bits (288), Expect = 2e-28
Identities = 71/249 (28%), Positives = 118/249 (47%), Gaps = 29/249 (11%)
Query: 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 443
+E+ + F Y AR S ++ G AL+G +G+GKST+ SL+ R Y Q G++
Sbjct: 2 LEVAGLSFRYGARR---ALDDVSFTVRPGRFVALLGPNGAGKSTLFSLLTRLYVAQEGQI 58
Query: 444 LIDGINLKEFQLQWIRKKIGLVSQEPVLFTG-SIKDNIAY-----GKDDATTEEIRVATE 497
+ G +L+ + + +G+V Q+P L S++ N+ Y G A R+A
Sbjct: 59 SVAGHDLRRAPRAALAR-LGVVFQQPTLDLDLSVRQNLRYHAALHGLSRAEARA-RIAEL 116
Query: 498 LANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAES 557
LA G+ + +L+GG ++R+ IARA+L P +LLLDE T LD S
Sbjct: 117 LAR---------LGLAERADDKVRELNGGHRRRVEIARALLHRPALLLLDEPTVGLDPAS 167
Query: 558 EKVVQEALDRIMVNRTTVIV---AHRLSTVRNADMIAVIHRGKIVEKGTHSKL-----VE 609
+ + R + + V H + + D + V+HRG+++ G ++L
Sbjct: 168 RAAITAHV-RALARDQGLSVLWATHLVDEIEADDRLVVLHRGRVLADGAAAELRGATGGA 226
Query: 610 DPEGAYSQL 618
D E A+ L
Sbjct: 227 DLEAAFLAL 235
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 236 |
| >gnl|CDD|225438 COG2884, FtsE, Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Score = 114 bits (287), Expect = 2e-28
Identities = 76/241 (31%), Positives = 112/241 (46%), Gaps = 38/241 (15%)
Query: 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 443
I +V +YP + S I G L G SG+GKST++ LI P G++
Sbjct: 2 IRFENVSKAYPGGR--EALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKI 59
Query: 444 LIDG---INLKEFQLQWIRKKIGLVSQEPVLFTG-SIKDNIAY-----GKDDATTEEIRV 494
L++G LK ++ ++R++IG+V Q+ L ++ +N+A GK RV
Sbjct: 60 LVNGHDLSRLKGREIPFLRRQIGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRR-RV 118
Query: 495 --ATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSA 552
+L LP +QLSGG++QR+AIARAI+ P +LL DE T
Sbjct: 119 SEVLDLVGLKHKARALP-----------SQLSGGEQQRVAIARAIVNQPAVLLADEPTGN 167
Query: 553 LDAESEKVVQEALDRIMVNR--TTVIVA-HRLSTVRNADMIAVIHRGKIVEKGTHSKLVE 609
LD + + + I NR TTV++A H L V HR +E G +LV
Sbjct: 168 LDPDLSWEIMRLFEEI--NRLGTTVLMATHDLELVNRMR-----HRVLALEDG---RLVR 217
Query: 610 D 610
D
Sbjct: 218 D 218
|
Length = 223 |
| >gnl|CDD|131367 TIGR02314, ABC_MetN, D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 117 bits (295), Expect = 2e-28
Identities = 73/223 (32%), Positives = 122/223 (54%), Gaps = 30/223 (13%)
Query: 406 SISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINL---KEFQLQWIRKKI 462
S+ + +G ++G SG+GKST+I + P +G V++DG +L +L R++I
Sbjct: 25 SLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKARRQI 84
Query: 463 GLVSQEPVLFTG-SIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGID---TLVG- 517
G++ Q L + ++ N+A + EL N K D++ + + LVG
Sbjct: 85 GMIFQHFNLLSSRTVFGNVA------------LPLELDNTPK--DEIKRKVTELLALVGL 130
Query: 518 -----EHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRI--MV 570
+ + LSGGQKQR+AIARA+ +P++LL DEATSALD + + + E L I +
Sbjct: 131 GDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTQSILELLKEINRRL 190
Query: 571 NRTTVIVAHRLSTV-RNADMIAVIHRGKIVEKGTHSKLVEDPE 612
T +++ H + V R D +AVI G+++E+GT S++ P+
Sbjct: 191 GLTILLITHEMDVVKRICDCVAVISNGELIEQGTVSEIFSHPK 233
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. Length = 343 |
| >gnl|CDD|236865 PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 121 bits (305), Expect = 3e-28
Identities = 56/167 (33%), Positives = 87/167 (52%), Gaps = 16/167 (9%)
Query: 1011 SAAASIFAIIDRESKIDPSDESGTILEDVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRA 1070
++A I I +++ ++ S + + L++VSF YP +P V + L+L+I+A
Sbjct: 309 ASARRINEITEQKPEVTFPTTST--AAADQVSLTLNNVSFTYPDQPQ-PVLKGLSLQIKA 365
Query: 1071 GKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMGLVSQEPVL 1130
G+ VAL+G +G GKST++ LL R +DP G I L+G I LRQ + +VSQ L
Sbjct: 366 GEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIADYSEAALRQAISVVSQRVHL 425
Query: 1131 FNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQVRTSRLL 1177
F+ T+R N + A+ A+ I LQQV +LL
Sbjct: 426 FSATLRDN-------------LLLAAPNASDEALIEVLQQVGLEKLL 459
|
Length = 574 |
| >gnl|CDD|213268 cd03301, ABC_MalK_N, The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Score = 113 bits (284), Expect = 4e-28
Identities = 65/223 (29%), Positives = 116/223 (52%), Gaps = 14/223 (6%)
Query: 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 443
+EL +V + N ++ I+ G L+G SG GK+T + +I +P +G +
Sbjct: 1 VELENVTKRFG---NVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRI 57
Query: 444 LIDGINLKEFQLQWIRKKIGLVSQEPVLFTG-SIKDNIAYGKDDATTEEIRVATELANAA 502
I G ++ + L + I +V Q L+ ++ DNIA+G + + + A
Sbjct: 58 YIGGRDVTD--LPPKDRDIAMVFQNYALYPHMTVYDNIAFGLKLRKVPKDEIDERVREVA 115
Query: 503 KFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQ 562
+ + I+ L+ QLSGGQ+QR+A+ RAI+++P++ L+DE S LDA+ ++
Sbjct: 116 ELL-----QIEHLLDRKPKQLSGGQRQRVALGRAIVREPKVFLMDEPLSNLDAKLRVQMR 170
Query: 563 EALDRIM--VNRTTVIVAH-RLSTVRNADMIAVIHRGKIVEKG 602
L R+ + TT+ V H ++ + AD IAV++ G+I + G
Sbjct: 171 AELKRLQQRLGTTTIYVTHDQVEAMTMADRIAVMNDGQIQQIG 213
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. Length = 213 |
| >gnl|CDD|172730 PRK14242, PRK14242, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 114 bits (286), Expect = 5e-28
Identities = 77/227 (33%), Positives = 118/227 (51%), Gaps = 20/227 (8%)
Query: 400 QIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYD--PQA---GEVLIDGINLKEFQ 454
Q S+ AL+G SG GKST + + R D P A GE+L+DG N+ +
Sbjct: 20 QALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPH 79
Query: 455 LQWI--RKKIGLVSQEPVLFTGSIKDNIAYG------KDDATTEEIRVATELANAAKFID 506
+ + R+++G+V Q+P F SI +N+AYG KD A E RV L +AA
Sbjct: 80 VDVVELRRRVGMVFQKPNPFPKSIFENVAYGLRVNGVKDKAYLAE-RVERSLRHAA---- 134
Query: 507 KLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALD 566
L + + E LSGGQ+QR+ IARA+ +P +LL+DE SALD + + ++E +
Sbjct: 135 -LWDEVKDRLHESALGLSGGQQQRLCIARALAVEPEVLLMDEPASALDPIATQKIEELIH 193
Query: 567 RIMVNRTTVIVAHRL-STVRNADMIAVIHRGKIVEKGTHSKLVEDPE 612
+ T +IV H + R +D+ A + GK++E G ++ P
Sbjct: 194 ELKARYTIIIVTHNMQQAARVSDVTAFFYMGKLIEVGPTEQIFTRPR 240
|
Length = 253 |
| >gnl|CDD|213231 cd03264, ABC_drug_resistance_like, ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Score = 112 bits (283), Expect = 5e-28
Identities = 57/227 (25%), Positives = 114/227 (50%), Gaps = 24/227 (10%)
Query: 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 443
++L ++ Y ++ G S+++ G L+G +G+GK+T++ ++ P +G +
Sbjct: 1 LQLENLTKRYG---KKRALDGVSLTLGPGMYG-LLGPNGAGKTTLMRILATLTPPSSGTI 56
Query: 444 LIDGINLKEFQLQWIRKKIGLVSQEPVLFTG-SIKDNIAY-----GKDDATT-EEIRVAT 496
IDG ++ + Q Q +R++IG + QE ++ ++++ + Y G +
Sbjct: 57 RIDGQDVLK-QPQKLRRRIGYLPQEFGVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVL 115
Query: 497 ELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAE 556
EL N K LSGG ++R+ IA+A++ DP IL++DE T+ LD E
Sbjct: 116 ELVNLGDRAKKKIG-----------SLSGGMRRRVGIAQALVGDPSILIVDEPTAGLDPE 164
Query: 557 SEKVVQEALDRIMVNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKG 602
+ L + +R ++ H + V + + +AV+++GK+V +G
Sbjct: 165 ERIRFRNLLSELGEDRIVILSTHIVEDVESLCNQVAVLNKGKLVFEG 211
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|236523 PRK09452, potA, putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Score = 116 bits (294), Expect = 5e-28
Identities = 77/241 (31%), Positives = 126/241 (52%), Gaps = 32/241 (13%)
Query: 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 443
+ELR + S+ +++ S ++I++G L+G SG GK+TV+ LI F P +G +
Sbjct: 15 VELRGISKSFD---GKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRI 71
Query: 444 LIDGINLKEFQLQWIRKKIGLVSQEPVLFTG-SIKDNIAYGKDDATT--EEI--RV--AT 496
++DG ++ + + + V Q LF ++ +N+A+G T EI RV A
Sbjct: 72 MLDGQDITHVPAE--NRHVNTVFQSYALFPHMTVFENVAFGLRMQKTPAAEITPRVMEAL 129
Query: 497 ELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAE 556
+ +F + P QLSGGQ+QR+AIARA++ P++LLLDE+ SALD +
Sbjct: 130 RMVQLEEFAQRKPH-----------QLSGGQQQRVAIARAVVNKPKVLLLDESLSALDYK 178
Query: 557 SEKVVQEALDRIM--VNRTTVIVAH----RLSTVRNADMIAVIHRGKIVEKGTHSKLVED 610
K +Q L + + T V V H L+ +D I V+ G+I + GT ++ E+
Sbjct: 179 LRKQMQNELKALQRKLGITFVFVTHDQEEALTM---SDRIVVMRDGRIEQDGTPREIYEE 235
Query: 611 P 611
P
Sbjct: 236 P 236
|
Length = 375 |
| >gnl|CDD|184200 PRK13640, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 114 bits (288), Expect = 5e-28
Identities = 72/242 (29%), Positives = 124/242 (51%), Gaps = 25/242 (10%)
Query: 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGE- 442
+E + V F+YP + + S SI G+ AL+G +GSGKST+ LI P
Sbjct: 6 VEFKHVSFTYPDSK-KPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPN 64
Query: 443 --VLIDGINLKEFQLQWIRKKIGLVSQEP-VLFTG-SIKDNIAYGKDD---ATTEEIRVA 495
+ +DGI L + IR+K+G+V Q P F G ++ D++A+G ++ E I++
Sbjct: 65 SKITVDGITLTAKTVWDIREKVGIVFQNPDNQFVGATVGDDVAFGLENRAVPRPEMIKIV 124
Query: 496 TELAN---AAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSA 552
++ +ID P LSGGQKQR+AIA + +P+I++LDE+TS
Sbjct: 125 RDVLADVGMLDYIDSEPA-----------NLSGGQKQRVAIAGILAVEPKIIILDESTSM 173
Query: 553 LDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVED 610
LD ++ + + + ++ N T + + H + AD + V+ GK++ +G+ ++
Sbjct: 174 LDPAGKEQILKLIRKLKKKNNLTVISITHDIDEANMADQVLVLDDGKLLAQGSPVEIFSK 233
Query: 611 PE 612
E
Sbjct: 234 VE 235
|
Length = 282 |
| >gnl|CDD|213256 cd03289, ABCC_CFTR2, ATP-binding cassette domain 2 of CFTR,subfamily C | Back alignment and domain information |
|---|
Score = 114 bits (287), Expect = 5e-28
Identities = 69/230 (30%), Positives = 123/230 (53%), Gaps = 5/230 (2%)
Query: 382 GDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAG 441
G + ++D+ Y N + S SIS G L+G++GSGKST++S R + + G
Sbjct: 1 GQMTVKDLTAKYTEGGN-AVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNTE-G 58
Query: 442 EVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNI-AYGKDDATTEEIRVATELAN 500
++ IDG++ LQ RK G++ Q+ +F+G+ + N+ YGK + EEI E
Sbjct: 59 DIQIDGVSWNSVPLQKWRKAFGVIPQKVFIFSGTFRKNLDPYGK--WSDEEIWKVAEEVG 116
Query: 501 AAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKV 560
I++ P +D ++ + G LS G KQ + +AR++L +ILLLDE ++ LD + +V
Sbjct: 117 LKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPITYQV 176
Query: 561 VQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVED 610
+++ L + + T ++ HR+ + VI K+ + + KL+ +
Sbjct: 177 IRKTLKQAFADCTVILSEHRIEAMLECQRFLVIEENKVRQYDSIQKLLNE 226
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. Length = 275 |
| >gnl|CDD|172741 PRK14253, PRK14253, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 113 bits (284), Expect = 6e-28
Identities = 73/231 (31%), Positives = 119/231 (51%), Gaps = 19/231 (8%)
Query: 400 QIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAG-----EVLIDGINL-KEF 453
Q ++ I + AL+G SG GKST++ + R D G ++ +DG ++
Sbjct: 17 QALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNI 76
Query: 454 QLQWIRKKIGLVSQEPVLFTGSIKDNIAYG------KDDATTEEIRVATELANAAKFIDK 507
+ +R K+G+V Q+P F SI +N+AYG KD +E+ V L AA + D+
Sbjct: 77 DVADLRIKVGMVFQKPNPFPMSIYENVAYGLRAQGIKDKKVLDEV-VERSLRGAALW-DE 134
Query: 508 LPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDR 567
+ + + H LSGGQ+QR+ IAR I +P ++L+DE TSALD + ++E ++
Sbjct: 135 VKDRLKS----HAFGLSGGQQQRLCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEE 190
Query: 568 IMVNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVEDPEGAYSQ 617
+ N T VIV H + R +D A G++VE + +P+ +Q
Sbjct: 191 LKKNYTIVIVTHSMQQARRISDRTAFFLMGELVEHDDTQVIFSNPKDDRTQ 241
|
Length = 249 |
| >gnl|CDD|237651 PRK14266, PRK14266, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 113 bits (283), Expect = 1e-27
Identities = 81/267 (30%), Positives = 131/267 (49%), Gaps = 37/267 (13%)
Query: 384 IELRD--VYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYD---- 437
IE+ + YF + I ++ I + AL+G SG GKST I + R D
Sbjct: 4 IEVENLNTYFD-----DAHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPG 58
Query: 438 -PQAGEVLIDGINLKEFQLQWI--RKKIGLVSQEPVLFTGSIKDNIAYG-----KDDATT 489
G + +DG+++ + + + RKK+G+V Q+P F SI DN+AYG +DD
Sbjct: 59 FRHEGHIYLDGVDIYDPAVDVVELRKKVGMVFQKPNPFPKSIFDNVAYGLRIHGEDDEDF 118
Query: 490 EEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEA 549
E RV L AA + D++ +D + LSGGQ+QR+ IAR I P ++L+DE
Sbjct: 119 IEERVEESLKAAALW-DEVKDKLD----KSALGLSGGQQQRLCIARTIAVSPEVILMDEP 173
Query: 550 TSALDAESEKVVQEALDRIMVNRTTVIVAHRL-STVRNADMIAVIHRGKIVEKGTHSKLV 608
SALD S +++ + ++ + T VIV H + R + + G+I+E G ++
Sbjct: 174 CSALDPISTTKIEDLIHKLKEDYTIVIVTHNMQQATRVSKYTSFFLNGEIIESGLTDQIF 233
Query: 609 EDPEGAYSQLIRLQEANKESEQTIDGQ 635
+P+ +K +E I G+
Sbjct: 234 INPK------------DKRTEDYITGR 248
|
Length = 250 |
| >gnl|CDD|172749 PRK14261, PRK14261, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 112 bits (282), Expect = 1e-27
Identities = 69/223 (30%), Positives = 113/223 (50%), Gaps = 20/223 (8%)
Query: 404 GFSISISSGTTAALVGQSGSGKSTVISLIERFYD-----PQAGEVLIDGINLKEFQLQ-- 456
+ISI AL+G SG GKST++ R D G++L +G N+ +
Sbjct: 24 DITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGADVV 83
Query: 457 WIRKKIGLVSQEPVLFTGSIKDNIAYG------KDDATTEEIRVATELANAAKFIDKLPQ 510
+R+KIG+V Q P F SI +N+AYG K+ T + I V L AA L
Sbjct: 84 ALRRKIGMVFQRPNPFPKSIYENVAYGPRIHGEKNKKTLDTI-VEKSLKGAA-----LWD 137
Query: 511 GIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMV 570
+ + + LSGGQ+QR+ IAR + +P ++L+DE SALD + +++ ++ +
Sbjct: 138 EVKDRLHDSALSLSGGQQQRLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKK 197
Query: 571 NRTTVIVAHRLS-TVRNADMIAVIHRGKIVEKGTHSKLVEDPE 612
T +IV H + R +D ++ GK++E +++ E+P
Sbjct: 198 EYTVIIVTHNMQQAARVSDYTGFMYLGKLIEFDKTTQIFENPH 240
|
Length = 253 |
| >gnl|CDD|131721 TIGR02673, FtsE, cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Score = 110 bits (278), Expect = 2e-27
Identities = 77/229 (33%), Positives = 113/229 (49%), Gaps = 27/229 (11%)
Query: 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 443
IE +V +YP S+ I G L G SG+GK+T++ L+ P G+V
Sbjct: 2 IEFHNVSKAYP--GGVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQV 59
Query: 444 LIDGIN---LKEFQLQWIRKKIGLVSQE-PVLFTGSIKDNIAY-----GKDDATTEEIRV 494
I G + L+ QL +R++IG+V Q+ +L ++ +N+A GK + RV
Sbjct: 60 RIAGEDVNRLRGRQLPLLRRRIGVVFQDFRLLPDRTVYENVALPLEVRGKK-EREIQRRV 118
Query: 495 ATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALD 554
A + + L D QLSGG++QR+AIARAI+ P +LL DE T LD
Sbjct: 119 GA----ALRQVG-LEHKADAFPE----QLSGGEQQRVAIARAIVNSPPLLLADEPTGNLD 169
Query: 555 AESEKVVQEALDRIMVNRTTVIVA-HRLSTVRNADMIAVIHRGKIVEKG 602
+ + + + L R+ TTVIVA H LS V V HR I++ G
Sbjct: 170 PDLSERILDLLKRLNKRGTTVIVATHDLSLVDR-----VAHRVIILDDG 213
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein [Cellular processes, Cell division]. Length = 214 |
| >gnl|CDD|172739 PRK14251, PRK14251, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 111 bits (278), Expect = 4e-27
Identities = 81/243 (33%), Positives = 121/243 (49%), Gaps = 23/243 (9%)
Query: 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYD-----P 438
I +DV+ SY N + G S+ AL+G SG GKST + + R D
Sbjct: 5 ISAKDVHLSYG---NYEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIK 61
Query: 439 QAGEVLIDGINL--KEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYG------KDDATTE 490
GE+ +G N+ + L +RK++G+V Q+P F S+ DN+AYG KD +
Sbjct: 62 ITGEIKFEGQNIYGSKMDLVELRKEVGMVFQQPTPFPFSVYDNVAYGLKIAGVKDKELID 121
Query: 491 EIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEAT 550
+ RV L AA + + D L + SGGQ+QRI IARA+ P+++LLDE T
Sbjct: 122 Q-RVEESLKQAAIW----KETKDNL-DRNAQAFSGGQQQRICIARALAVRPKVVLLDEPT 175
Query: 551 SALDAESEKVVQEALDRIMVNRTTVIVAHRLSTV-RNADMIAVIHRGKIVEKGTHSKLVE 609
SALD S ++E L + T ++V H L R +D A + G ++E G ++
Sbjct: 176 SALDPISSSEIEETLMELKHQYTFIMVTHNLQQAGRISDQTAFLMNGDLIEAGPTEEMFI 235
Query: 610 DPE 612
P+
Sbjct: 236 APK 238
|
Length = 251 |
| >gnl|CDD|131197 TIGR02142, modC_ABC, molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 114 bits (286), Expect = 4e-27
Identities = 72/204 (35%), Positives = 111/204 (54%), Gaps = 15/204 (7%)
Query: 416 ALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINL----KEFQLQWIRKKIGLVSQEPVL 471
A+ G+SGSGK+T+I LI P GE++++G L K L +++IG V QE L
Sbjct: 27 AIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIGYVFQEARL 86
Query: 472 FTG-SIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQR 530
F S++ N+ YG A E R+ + + I+ L GI L+G +LSGG+KQR
Sbjct: 87 FPHLSVRGNLRYGMKRARPSERRI-----SFERVIELL--GIGHLLGRLPGRLSGGEKQR 139
Query: 531 IAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIM--VNRTTVIVAHRLSTV-RNA 587
+AI RA+L PR+LL+DE +ALD + + L+R+ + V+H L V R A
Sbjct: 140 VAIGRALLSSPRLLLMDEPLAALDDPRKYEILPYLERLHAEFGIPILYVSHSLQEVLRLA 199
Query: 588 DMIAVIHRGKIVEKGTHSKLVEDP 611
D + V+ G++ G +++ P
Sbjct: 200 DRVVVLEDGRVAAAGPIAEVWASP 223
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter [Transport and binding proteins, Anions]. Length = 354 |
| >gnl|CDD|106587 PRK13644, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 111 bits (279), Expect = 5e-27
Identities = 84/269 (31%), Positives = 131/269 (48%), Gaps = 20/269 (7%)
Query: 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 443
I L +V +SYP ++ I G ++G++GSGKST+ + PQ G+V
Sbjct: 2 IRLENVSYSYP--DGTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKV 59
Query: 444 LIDGINLKEF-QLQWIRKKIGLVSQEP-VLFTG-SIKDNIAYGKDDATTE--EIRVATEL 498
L+ GI+ +F +LQ IRK +G+V Q P F G ++++++A+G ++ EIR +
Sbjct: 60 LVSGIDTGDFSKLQGIRKLVGIVFQNPETQFVGRTVEEDLAFGPENLCLPPIEIRKRVDR 119
Query: 499 ANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESE 558
A A ++K LSGGQ Q +A+A + +P L+ DE TS LD +S
Sbjct: 120 ALAEIGLEKYRH-------RSPKTLSGGQGQCVALAGILTMEPECLIFDEVTSMLDPDSG 172
Query: 559 KVVQEALDRIMVN-RTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVEDPEGAY-- 615
V E + ++ +T V + H L + +AD I V+ RGKIV +G ++ D
Sbjct: 173 IAVLERIKKLHEKGKTIVYITHNLEELHDADRIIVMDRGKIVLEGEPENVLSDVSLQTLG 232
Query: 616 ---SQLIRLQEANKESEQTIDGQRKSEIS 641
LI L E K I + S S
Sbjct: 233 LTPPSLIELAENLKMHGVVIPWENTSSPS 261
|
Length = 274 |
| >gnl|CDD|188353 TIGR03608, L_ocin_972_ABC, putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Score = 109 bits (275), Expect = 5e-27
Identities = 58/202 (28%), Positives = 102/202 (50%), Gaps = 17/202 (8%)
Query: 398 NEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQ--- 454
++ I +++I G A++G+SGSGKST++++I +G+V ++G
Sbjct: 10 DKVILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGQETPPLNSKK 69
Query: 455 -LQWIRKKIGLVSQEPVLF-TGSIKDNIAYG---KDDATTEEIRVATELANAAKFIDKLP 509
++ R+K+G + Q L ++++N+ G K + E+ E KL
Sbjct: 70 ASKFRREKLGYLFQNFALIENETVEENLDLGLKYKKLSKKEKREKKKEALEKVGLNLKLK 129
Query: 510 QGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIM 569
Q I +LSGG++QR+A+ARAILK P ++L DE T +LD ++ V + L +
Sbjct: 130 QKI--------YELSGGEQQRVALARAILKPPPLILADEPTGSLDPKNRDEVLDLLLELN 181
Query: 570 -VNRTTVIVAHRLSTVRNADMI 590
+T +IV H + AD +
Sbjct: 182 DEGKTIIIVTHDPEVAKQADRV 203
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins [Cellular processes, Toxin production and resistance, Transport and binding proteins, Unknown substrate]. Length = 206 |
| >gnl|CDD|131368 TIGR02315, ABC_phnC, phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 109 bits (275), Expect = 1e-26
Identities = 68/245 (27%), Positives = 128/245 (52%), Gaps = 28/245 (11%)
Query: 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 443
+E+ ++ YP +Q +++I+ G A++G SG+GKST++ I R +P +G +
Sbjct: 2 LEVENLSKVYPN--GKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSI 59
Query: 444 LIDG---INLKEFQLQWIRKKIGLVSQEPVLFTG-SIKDNIAYGKDDATT---------- 489
L++G L+ +L+ +R++IG++ Q L ++ +N+ +G+
Sbjct: 60 LLEGTDITKLRGKKLRKLRRRIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFS 119
Query: 490 -EEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDE 548
E+ A ++++ G+ + QLSGGQ+QR+AIARA+ + P ++L DE
Sbjct: 120 EEDKERALSA------LERV--GLADKAYQRADQLSGGQQQRVAIARALAQQPDLILADE 171
Query: 549 ATSALDAESEKVVQEALDRIMVNR--TTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHS 605
++LD ++ K V + L RI T +I H++ + AD I + G+IV G S
Sbjct: 172 PIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVDLAKKYADRIVGLKAGEIVFDGAPS 231
Query: 606 KLVED 610
+L ++
Sbjct: 232 ELDDE 236
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates [Transport and binding proteins, Anions]. Length = 243 |
| >gnl|CDD|172747 PRK14259, PRK14259, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 109 bits (274), Expect = 3e-26
Identities = 82/219 (37%), Positives = 113/219 (51%), Gaps = 28/219 (12%)
Query: 409 ISSGTTAALVGQSGSGKSTVISLIERFYD-----PQAGEVLIDGINLKEFQLQ--WIRKK 461
I G AL+G SG GKSTV+ + R D G VL DG +L + ++ +R++
Sbjct: 36 IPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVDPVEVRRR 95
Query: 462 IGLVSQEPVLFTGSIKDNIAYGKD----DATTEEIRVATELANAAKF---IDKLPQGIDT 514
IG+V Q+P F SI +NIA+G +E+ V L AA + DKL
Sbjct: 96 IGMVFQQPNPFPKSIYENIAFGARINGYTGDMDEL-VERSLRKAAVWDECKDKL------ 148
Query: 515 LVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTT 574
E G LSGGQ+QR+ IAR I +P ++L+DE SALD S ++E + + N T
Sbjct: 149 --NESGYSLSGGQQQRLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELKKNFTI 206
Query: 575 VIVAHRL-STVRNADMIAVIHRGKIVEKGTHSK---LVE 609
VIV H + VR +DM A + VE G+ K LVE
Sbjct: 207 VIVTHNMQQAVRVSDMTA-FFNAEEVEGGSGGKVGYLVE 244
|
Length = 269 |
| >gnl|CDD|130234 TIGR01166, cbiO, cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Score = 106 bits (266), Expect = 4e-26
Identities = 59/196 (30%), Positives = 96/196 (48%), Gaps = 23/196 (11%)
Query: 393 YPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKE 452
YP P ++ G + + G AL+G +G+GKST++ + PQ+G VLIDG L
Sbjct: 1 YPGGP--EVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDY 58
Query: 453 FQ--LQWIRKKIGLVSQEP--VLFTGSIKDNIAYG------KDDATTEEIRVATELANAA 502
+ L R+++GLV Q+P LF + ++A+G + +R A A+
Sbjct: 59 SRKGLLERRQRVGLVFQDPDDQLFAADVDQDVAFGPLNLGLSEAEVERRVREALTAVGAS 118
Query: 503 KFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQ 562
++ LSGG+K+R+AIA A+ P +LLLDE T+ LD + +
Sbjct: 119 GLRERPTH-----------CLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGREQML 167
Query: 563 EALDRIMVNRTTVIVA 578
L R+ TV+++
Sbjct: 168 AILRRLRAEGMTVVIS 183
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux [Transport and binding proteins, Cations and iron carrying compounds]. Length = 190 |
| >gnl|CDD|226927 COG4555, NatA, ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 107 bits (269), Expect = 6e-26
Identities = 69/253 (27%), Positives = 127/253 (50%), Gaps = 26/253 (10%)
Query: 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 443
+E+ D+ SY Q S G L+G++G+GK+T++ +I P +G+V
Sbjct: 2 LEVTDLTKSYG--SKVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKV 59
Query: 444 LIDGINLKEFQLQWIRKKIGLVSQEPVLFTG-SIKDNIAY-----GKDDATTEEIRVATE 497
IDG++ ++R+KIG++ E L+ + ++N+ Y G +
Sbjct: 60 TIDGVDTVR-DPSFVRRKIGVLFGERGLYARLTARENLKYFARLNGLSRKEIK-----AR 113
Query: 498 LANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAES 557
+A +K + L + +D VGE S G KQ++AIARA++ DP IL+LDE TS LD +
Sbjct: 114 IAELSKRLQ-LLEYLDRRVGE----FSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRT 168
Query: 558 EKVVQEALDRIM-VNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLV-----ED 610
+ + + ++ R + +H + V D + V+H+G++V +G+ L +
Sbjct: 169 RRKFHDFIKQLKNEGRAVIFSSHIMQEVEALCDRVIVLHKGEVVLEGSIEALDARTVLRN 228
Query: 611 PEGAYSQLIRLQE 623
E ++ ++L+E
Sbjct: 229 LEEIFAFALKLEE 241
|
Length = 245 |
| >gnl|CDD|172735 PRK14247, PRK14247, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 107 bits (269), Expect = 7e-26
Identities = 77/247 (31%), Positives = 131/247 (53%), Gaps = 25/247 (10%)
Query: 381 RGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVIS----LIERFY 436
IE+RD+ S+ ++ G ++ I T AL+G SGSGKST++ LIE +
Sbjct: 1 MNKIEIRDLKVSFG---QVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYP 57
Query: 437 DPQ-AGEVLIDGINLKEFQLQWIRKKIGLVSQEP-VLFTGSIKDNIAYG-------KDDA 487
+ + +GEV +DG ++ + + +R+++ +V Q P + SI +N+A G K
Sbjct: 58 EARVSGEVYLDGQDIFKMDVIELRRRVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKK 117
Query: 488 TTEE-IRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLL 546
+E +R A E A+ D++ +D G +LSGGQ+QR+ IARA+ P +LL
Sbjct: 118 ELQERVRWALE---KAQLWDEVKDRLDAPAG----KLSGGQQQRLCIARALAFQPEVLLA 170
Query: 547 DEATSALDAESEKVVQEALDRIMVNRTTVIVAH-RLSTVRNADMIAVIHRGKIVEKGTHS 605
DE T+ LD E+ ++ + + T V+V H R +D +A +++G+IVE G
Sbjct: 171 DEPTANLDPENTAKIESLFLELKKDMTIVLVTHFPQQAARISDYVAFLYKGQIVEWGPTR 230
Query: 606 KLVEDPE 612
++ +P
Sbjct: 231 EVFTNPR 237
|
Length = 250 |
| >gnl|CDD|182221 PRK10070, PRK10070, glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 110 bits (277), Expect = 9e-26
Identities = 78/221 (35%), Positives = 126/221 (57%), Gaps = 19/221 (8%)
Query: 406 SISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEF---QLQWIR-KK 461
S++I G ++G SGSGKST++ L+ R +P G+VLIDG+++ + +L+ +R KK
Sbjct: 48 SLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKK 107
Query: 462 IGLVSQEPVLFTG-SIKDNIAYGKDDA--TTEEIRVATELANAAKFIDKLPQ-GIDTLVG 517
I +V Q L ++ DN A+G + A EE R K +D L Q G++
Sbjct: 108 IAMVFQSFALMPHMTVLDNTAFGMELAGINAEERR--------EKALDALRQVGLENYAH 159
Query: 518 EHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTV 575
+ +LSGG +QR+ +ARA+ +P ILL+DEA SALD +Q+ L ++ RT V
Sbjct: 160 SYPDELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQRTIV 219
Query: 576 IVAHRL-STVRNADMIAVIHRGKIVEKGTHSKLVEDPEGAY 615
++H L +R D IA++ G++V+ GT +++ +P Y
Sbjct: 220 FISHDLDEAMRIGDRIAIMQNGEVVQVGTPDEILNNPANDY 260
|
Length = 400 |
| >gnl|CDD|132050 TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 107 bits (268), Expect = 1e-25
Identities = 74/236 (31%), Positives = 115/236 (48%), Gaps = 35/236 (14%)
Query: 401 IFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINL---------- 450
+ G + S+++G AL+G SGSGKST++ ++ G++ ++G L
Sbjct: 15 VLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPL 74
Query: 451 ---KEFQLQWIRKKIGLVSQEPVLFT-GSIKDNIAYG----KDDATTEEIRVATELANAA 502
E L+ +R KIG+V Q LF ++ DN+ A E + A EL +
Sbjct: 75 VPADEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMV 134
Query: 503 KFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQ 562
DK QLSGGQ+QR+AIARA+ P+++L DE TSALD E +V
Sbjct: 135 GLADKADH--------MPAQLSGGQQQRVAIARALAMRPKVMLFDEVTSALDPE---LVG 183
Query: 563 EALDRIM-----VNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVEDPE 612
E L+ I + T ++V H + R AD + +G+IVE+G ++ P+
Sbjct: 184 EVLNVIRRLASEHDLTMLLVTHEMGFAREFADRVCFFDKGRIVEQGKPDEIFRQPK 239
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. Length = 252 |
| >gnl|CDD|184199 PRK13639, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 107 bits (269), Expect = 1e-25
Identities = 81/265 (30%), Positives = 128/265 (48%), Gaps = 24/265 (9%)
Query: 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 443
+E RD+ +SYP + G + G AL+G +G+GKST+ P +GEV
Sbjct: 2 LETRDLKYSYP--DGTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEV 59
Query: 444 LIDG--INLKEFQLQWIRKKIGLVSQEP--VLFTGSIKDNIAYGKDDATTEEIRVATELA 499
LI G I + L +RK +G+V Q P LF ++++++A+G + + V +
Sbjct: 60 LIKGEPIKYDKKSLLEVRKTVGIVFQNPDDQLFAPTVEEDVAFGPLNLGLSKEEVEKRVK 119
Query: 500 NAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEK 559
A K + +G + H LSGGQK+R+AIA + P I++LDE TS LD
Sbjct: 120 EALKAVGM--EGFENKPPHH---LSGGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGAS 174
Query: 560 VVQEALDRIMVNR---TTVIVAHRLSTV-RNADMIAVIHRGKIVEKGTHSKLVEDPEGAY 615
+ + L + N+ T +I H + V AD + V+ GKI+++GT ++ D E
Sbjct: 175 QIMKLLYDL--NKEGITIIISTHDVDLVPVYADKVYVMSDGKIIKEGTPKEVFSDIETIR 232
Query: 616 SQLIRL-------QEANKESEQTID 633
+RL + NKE I
Sbjct: 233 KANLRLPRVAHLIEILNKEDNLPIK 257
|
Length = 275 |
| >gnl|CDD|226961 COG4598, HisP, ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 107 bits (268), Expect = 1e-25
Identities = 80/268 (29%), Positives = 137/268 (51%), Gaps = 52/268 (19%)
Query: 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 443
+E+ D++ Y +E + G S+ ++G +++G SGSGKST + I P AG +
Sbjct: 7 LEVEDLHKRYG--EHE-VLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSI 63
Query: 444 LIDG--INLK-----------EFQLQWIRKKIGLVSQEPVLFTG-SIKDNIAYG------ 483
++G I LK + QLQ +R ++G+V Q L++ ++ +N+
Sbjct: 64 RVNGEEIRLKRDKDGQLKPADKRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVLG 123
Query: 484 --KDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDP 541
K +A + A K++ K+ GI + LSGGQ+QR+AIARA+ +P
Sbjct: 124 VSKAEA----------IERAEKYLAKV--GIAEKADAYPAHLSGGQQQRVAIARALAMEP 171
Query: 542 RILLLDEATSALDAESEKVVQEALDRIMVN-----RTTVIVAHRLSTVRN-ADMIAVIHR 595
++L DE TSALD E +V E L ++M + RT V+V H + R+ + + +H+
Sbjct: 172 EVMLFDEPTSALDPE---LVGEVL-KVMQDLAEEGRTMVVVTHEMGFARDVSSHVIFLHQ 227
Query: 596 GKIVEKGTHSKLVEDPEGAYSQLIRLQE 623
GKI E+G ++ +P+ RL++
Sbjct: 228 GKIEEEGPPEQVFGNPQSP-----RLKQ 250
|
Length = 256 |
| >gnl|CDD|240327 PTZ00243, PTZ00243, ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 114 bits (288), Expect = 1e-25
Identities = 67/223 (30%), Positives = 123/223 (55%), Gaps = 8/223 (3%)
Query: 401 IFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRK 460
+ G S I+ +VG++GSGKST++ R + GE+ ++G + + L+ +R+
Sbjct: 1325 VLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGLRELRR 1384
Query: 461 KIGLVSQEPVLFTGSIKDNIAYGKD---DATTEEIRVATELANAAKFIDKLPQGIDTLVG 517
+ ++ Q+PVLF G+++ N+ D +A++ E+ A EL + + +GID+ V
Sbjct: 1385 QFSMIPQDPVLFDGTVRQNV----DPFLEASSAEVWAALELVGLRERVASESEGIDSRVL 1440
Query: 518 EHGTQLSGGQKQRIAIARAILK-DPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVI 576
E G+ S GQ+Q + +ARA+LK +L+DEAT+ +D ++ +Q + T +
Sbjct: 1441 EGGSNYSVGQRQLMCMARALLKKGSGFILMDEATANIDPALDRQIQATVMSAFSAYTVIT 1500
Query: 577 VAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVEDPEGAYSQLI 619
+AHRL TV D I V+ G + E G+ +LV + + + ++
Sbjct: 1501 IAHRLHTVAQYDKIIVMDHGAVAEMGSPRELVMNRQSIFHSMV 1543
|
Length = 1560 |
| >gnl|CDD|184596 PRK14267, PRK14267, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 106 bits (267), Expect = 1e-25
Identities = 77/246 (31%), Positives = 123/246 (50%), Gaps = 27/246 (10%)
Query: 384 IELRD--VYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYD--PQ 439
IE + VY+ + + G + I AL+G SG GKST++ R + +
Sbjct: 5 IETVNLRVYYG-----SNHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEE 59
Query: 440 A---GEVLIDGINLKEFQLQWI--RKKIGLVSQEPVLFTG-SIKDNIAYG----KDDATT 489
A GEV + G N+ + I R+++G+V Q P F +I DN+A G +
Sbjct: 60 ARVEGEVRLFGRNIYSPDVDPIEVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSK 119
Query: 490 EEI--RVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLD 547
+E+ RV L AA L + + ++ + LSGGQ+QR+ IARA+ P+ILL+D
Sbjct: 120 KELDERVEWALKKAA-----LWDEVKDRLNDYPSNLSGGQRQRLVIARALAMKPKILLMD 174
Query: 548 EATSALDAESEKVVQEALDRIMVNRTTVIVAHR-LSTVRNADMIAVIHRGKIVEKGTHSK 606
E T+ +D ++E L + T V+V H R +D +A ++ GK++E G K
Sbjct: 175 EPTANIDPVGTAKIEELLFELKKEYTIVLVTHSPAQAARVSDYVAFLYLGKLIEVGPTRK 234
Query: 607 LVEDPE 612
+ E+PE
Sbjct: 235 VFENPE 240
|
Length = 253 |
| >gnl|CDD|184584 PRK14238, PRK14238, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 106 bits (267), Expect = 2e-25
Identities = 74/243 (30%), Positives = 117/243 (48%), Gaps = 32/243 (13%)
Query: 407 ISISSGTTAALVGQSGSGKSTVISLIERFYD-----PQAGEVLIDGINL--KEFQLQWIR 459
+ I A++G SG GKST I + R + G++L N+ K + ++ +R
Sbjct: 45 LDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYSVEELR 104
Query: 460 KKIGLVSQEPVLFTGSIKDNIAYG------KDDATTEEIRVATELANAAKFIDKLPQGID 513
+G+V Q+P F SI DN+ YG KD T +EI V L AA + D+L +
Sbjct: 105 TNVGMVFQKPNPFPKSIYDNVTYGPKIHGIKDKKTLDEI-VEKSLRGAAIW-DELKDRLH 162
Query: 514 TLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRT 573
+ LSGGQ+QR+ IAR + +P ++L+DE TSALD S V+E + + + +
Sbjct: 163 D----NAYGLSGGQQQRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKKDYS 218
Query: 574 TVIVAHRL-STVRNADMIAVIHRGKIVEKGTHSKLVEDPEGAYSQLIRLQEANKESEQTI 632
+IV H + R +D A G + E K+ +P ++K +E I
Sbjct: 219 IIIVTHNMQQAARISDKTAFFLNGYVNEYDDTDKIFSNP------------SDKRTEDYI 266
Query: 633 DGQ 635
G+
Sbjct: 267 TGR 269
|
Length = 271 |
| >gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Score = 114 bits (286), Expect = 2e-25
Identities = 87/289 (30%), Positives = 138/289 (47%), Gaps = 35/289 (12%)
Query: 401 IFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRK 460
+ S + G A+ G +GSGKS+++ +I +P G++ G
Sbjct: 441 VLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPSEGKIKHSG------------- 487
Query: 461 KIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKF---IDKLPQGIDTLVG 517
+I Q + G+IKDNI +G + +E R T + A + I P+ T++G
Sbjct: 488 RISFSPQTSWIMPGTIKDNIIFG---LSYDEYRY-TSVIKACQLEEDIALFPEKDKTVLG 543
Query: 518 EHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEK-VVQEALDRIMVNRTTVI 576
E G LSGGQ+ RI++ARA+ KD + LLD + LD +EK + + L ++M N+T ++
Sbjct: 544 EGGITLSGGQRARISLARAVYKDADLYLLDSPFTHLDVVTEKEIFESCLCKLMSNKTRIL 603
Query: 577 VAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVEDPEGAYSQLIRLQEANKESEQTIDGQR 636
V +L ++ AD I ++H G GT S+L S L+ L E+ +R
Sbjct: 604 VTSKLEHLKKADKILLLHEGVCYFYGTFSELQAKRPDFSSLLLGL-----EAFDNFSAER 658
Query: 637 KSEISMESLRHSSHRMSLRRSISRGSSIGNSSRHSISVSFGLPSGQFAD 685
++ I E+LR R SI G S S +I SF P +FA+
Sbjct: 659 RNSILTETLR--------RVSID-GDSTVFSGPETIKQSFKQPPPEFAE 698
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se [Transport and binding proteins, Anions]. Length = 1490 |
| >gnl|CDD|213214 cd03247, ABCC_cytochrome_bd, ATP-binding cassette domain of CydCD, subfamily C | Back alignment and domain information |
|---|
Score = 103 bits (259), Expect = 3e-25
Identities = 40/97 (41%), Positives = 66/97 (68%), Gaps = 2/97 (2%)
Query: 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHI 1102
+ +++VSF YP + + QV ++L+L+++ G+ +AL+G SGSGKST++ LL P G I
Sbjct: 1 LSINNVSFSYPEQ-EQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEI 59
Query: 1103 TLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANI 1139
TLDGV + L+ K L + +++Q P LF+ T+R N+
Sbjct: 60 TLDGVPVSDLE-KALSSLISVLNQRPYLFDTTLRNNL 95
|
The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. Length = 178 |
| >gnl|CDD|184207 PRK13648, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 106 bits (266), Expect = 3e-25
Identities = 68/242 (28%), Positives = 123/242 (50%), Gaps = 26/242 (10%)
Query: 384 IELRDVYFSYPARPNEQIFS--GFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAG 441
I ++V F Y + + F+ S +I G ++VG +GSGKST+ L+ ++G
Sbjct: 8 IVFKNVSFQYQS---DASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSG 64
Query: 442 EVLIDGINLKEFQLQWIRKKIGLVSQEPV-LFTGSI-KDNIAYGKD------DATTEEIR 493
E+ + + + + +RK IG+V Q P F GSI K ++A+G + D +
Sbjct: 65 EIFYNNQAITDDNFEKLRKHIGIVFQNPDNQFVGSIVKYDVAFGLENHAVPYDEMHRRVS 124
Query: 494 VATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSAL 553
A + + + D P LSGGQKQR+AIA + +P +++LDEATS L
Sbjct: 125 EALKQVDMLERADYEPNA-----------LSGGQKQRVAIAGVLALNPSVIILDEATSML 173
Query: 554 DAESEKVVQEALDRIMVNRTTVIVA--HRLSTVRNADMIAVIHRGKIVEKGTHSKLVEDP 611
D ++ + + + + ++ I++ H LS AD + V+++G + ++GT +++ +
Sbjct: 174 DPDARQNLLDLVRKVKSEHNITIISITHDLSEAMEADHVIVMNKGTVYKEGTPTEIFDHA 233
Query: 612 EG 613
E
Sbjct: 234 EE 235
|
Length = 269 |
| >gnl|CDD|130344 TIGR01277, thiQ, thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 104 bits (260), Expect = 5e-25
Identities = 72/228 (31%), Positives = 119/228 (52%), Gaps = 34/228 (14%)
Query: 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 443
+ L V + Y P E F ++++ G A++G SG+GKST+++LI F +P +G +
Sbjct: 1 LALDKVRYEYEHLPME-----FDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSI 55
Query: 444 LIDGINLKEFQLQWIRKKIGLVSQEPVLFTG-SIKDNIAYG-----KDDATTEE-IRVAT 496
++ + L ++ + ++ QE LF +++ NI G K +A +E + A
Sbjct: 56 KVNDQS--HTGLAPYQRPVSMLFQENNLFAHLTVRQNIGLGLHPGLKLNAEQQEKVVDAA 113
Query: 497 ELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAE 556
+ A ++D+LP+ QLSGGQ+QR+A+AR +++ ILLLDE SALD
Sbjct: 114 QQVGIADYLDRLPE-----------QLSGGQRQRVALARCLVRPNPILLLDEPFSALD-- 160
Query: 557 SEKVVQEALDRIMV-----NRTTVIVAHRLS-TVRNADMIAVIHRGKI 598
+ +E L + RT ++V H LS A IAV+ +GKI
Sbjct: 161 -PLLREEMLALVKQLCSERQRTLLMVTHHLSDARAIASQIAVVSQGKI 207
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found [Transport and binding proteins, Other]. Length = 213 |
| >gnl|CDD|184202 PRK13642, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 105 bits (264), Expect = 5e-25
Identities = 75/238 (31%), Positives = 125/238 (52%), Gaps = 19/238 (7%)
Query: 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 443
+E+ ++ F Y + +G S SI+ G +++GQ+GSGKST LI+ ++ G+V
Sbjct: 5 LEVENLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKV 64
Query: 444 LIDGINLKEFQLQWIRKKIGLVSQEP-VLFTG-SIKDNIAYGKDDA---TTEEIRVATEL 498
IDG L + +R+KIG+V Q P F G +++D++A+G ++ E I+ E
Sbjct: 65 KIDGELLTAENVWNLRRKIGMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKRVDEA 124
Query: 499 ANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALD---- 554
A +D +LSGGQKQR+A+A I P I++LDE+TS LD
Sbjct: 125 LLAVNMLD--------FKTREPARLSGGQKQRVAVAGIIALRPEIIILDESTSMLDPTGR 176
Query: 555 AESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVEDPE 612
E +V+ E ++ + T + + H L ++D I V+ G+I+++ S+L E
Sbjct: 177 QEIMRVIHEIKEKYQL--TVLSITHDLDEAASSDRILVMKAGEIIKEAAPSELFATSE 232
|
Length = 277 |
| >gnl|CDD|213265 cd03298, ABC_ThiQ_thiamine_transporter, ATP-binding cassette domain of the thiamine transport system | Back alignment and domain information |
|---|
Score = 104 bits (260), Expect = 5e-25
Identities = 67/225 (29%), Positives = 114/225 (50%), Gaps = 20/225 (8%)
Query: 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 443
+ L + FSY +P F ++ + G A+VG SGSGKST+++LI F PQ+G V
Sbjct: 1 VRLDKIRFSYGEQPMH-----FDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRV 55
Query: 444 LIDGINLKEFQLQWIRKKIGLVSQEPVLFTG-SIKDNIAYGKDDAT--TEEIRVATELAN 500
LI+G+++ + + ++ QE LF +++ N+ G T E R A E+A
Sbjct: 56 LINGVDVT--AAPPADRPVSMLFQENNLFAHLTVEQNVGLGLSPGLKLTAEDRQAIEVAL 113
Query: 501 AAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKV 560
A G+ L +LSGG++QR+A+AR +++D +LLLDE +ALD
Sbjct: 114 AR-------VGLAGLEKRLPGELSGGERQRVALARVLVRDKPVLLLDEPFAALDPALRAE 166
Query: 561 VQEALDRIMVNR--TTVIVAHRLSTVRN-ADMIAVIHRGKIVEKG 602
+ + + + T ++V H+ + A + + G+I +G
Sbjct: 167 MLDLVLDLHAETKMTVLMVTHQPEDAKRLAQRVVFLDNGRIAAQG 211
|
Part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|237652 PRK14275, PRK14275, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 106 bits (265), Expect = 6e-25
Identities = 78/221 (35%), Positives = 115/221 (52%), Gaps = 26/221 (11%)
Query: 409 ISSGTTAALVGQSGSGKSTVISLIERFYD--PQ---AGEVLIDGINL-----KEFQLQWI 458
I S A++G SG GKST + I R D P G ++ DG ++ E L
Sbjct: 62 ILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTDEVLL--- 118
Query: 459 RKKIGLVSQEPVLFTGSIKDNIAYG------KDDATTEEIRVATELANAAKFIDKLPQGI 512
RKKIG+V Q+P F SI DNIAYG D EEI V L AA + D++ +
Sbjct: 119 RKKIGMVFQKPNPFPKSIFDNIAYGPRLHGINDKKQLEEI-VEKSLRKAALW-DEVSDRL 176
Query: 513 DTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNR 572
D ++ LSGGQ+QR+ +AR + +P ILLLDE TSALD ++ +++ + + +
Sbjct: 177 D----KNALGLSGGQQQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRGSY 232
Query: 573 TTVIVAHRLSTV-RNADMIAVIHRGKIVEKGTHSKLVEDPE 612
T +IV H + R +D + G +VE ++L +P+
Sbjct: 233 TIMIVTHNMQQASRVSDYTMFFYEGVLVEHAPTAQLFTNPK 273
|
Length = 286 |
| >gnl|CDD|131817 TIGR02770, nickel_nikD, nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Score = 104 bits (261), Expect = 6e-25
Identities = 70/234 (29%), Positives = 111/234 (47%), Gaps = 32/234 (13%)
Query: 403 SGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQA----GEVLIDGINLKEFQLQWI 458
++S+ G ALVG+SGSGKS I P GE+L+DG L L
Sbjct: 3 QDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLP--LSIR 60
Query: 459 RKKIGLVSQEPV-----LFTGSIKDNIAYGKDDATTEEIRVATELANAAKFI-------D 506
+ I + Q P LFT + ++ E +R +L+ A+ +
Sbjct: 61 GRHIATIMQNPRTAFNPLFT--MGNHA--------IETLRSLGKLSKQARALILEALEAV 110
Query: 507 KLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALD 566
LP + ++ ++ QLSGG QR+ IA A+L +P L+ DE T+ LD ++ V + L
Sbjct: 111 GLPDP-EEVLKKYPFQLSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQARVLKLLR 169
Query: 567 RIMVNRTTVI--VAHRLSTV-RNADMIAVIHRGKIVEKGTHSKLVEDPEGAYSQ 617
+ T I + H L V R AD +AV+ G+IVE+GT ++ +P+ ++
Sbjct: 170 ELRQLFGTGILLITHDLGVVARIADEVAVMDDGRIVERGTVKEIFYNPKHETTR 223
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous [Transport and binding proteins, Cations and iron carrying compounds]. Length = 230 |
| >gnl|CDD|132027 TIGR02982, heterocyst_DevA, ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Score = 103 bits (260), Expect = 6e-25
Identities = 65/218 (29%), Positives = 107/218 (49%), Gaps = 34/218 (15%)
Query: 400 QIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLK---EFQLQ 456
Q+ ++ I+ G L G SGSGK+T+++LI Q G + + G L E +L
Sbjct: 19 QVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELV 78
Query: 457 WIRKKIGLVSQ-----------EPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFI 505
+R+ IG + Q + V ++ N++Y + + A L + +
Sbjct: 79 QLRRNIGYIFQAHNLLGFLTARQNVQMALELQPNLSYQEARERARAMLEAVGLGDH---L 135
Query: 506 DKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEAL 565
D P LSGGQKQR+AIARA++ P+++L DE T+ALD++S + V E +
Sbjct: 136 DYYPH-----------NLSGGQKQRVAIARALVHRPKLVLADEPTAALDSKSGRDVVELM 184
Query: 566 DRIMVNR--TTVIVAH--RLSTVRNADMIAVIHRGKIV 599
++ + T +IV H R+ V AD I + GK++
Sbjct: 185 QKLAREQGCTILIVTHDNRILDV--ADRIVHMEDGKLL 220
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. Length = 220 |
| >gnl|CDD|183063 PRK11264, PRK11264, putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Score = 104 bits (262), Expect = 6e-25
Identities = 79/238 (33%), Positives = 119/238 (50%), Gaps = 41/238 (17%)
Query: 399 EQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAG-----EVLIDG---INL 450
+ + G + + G A++G SGSGK+T++ I P+AG ++ ID ++
Sbjct: 16 QTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQ 75
Query: 451 KEFQLQWIRKKIGLVSQEPVLFTG-SIKDNIAYG----KDDATTEEIRVATELANAAKFI 505
++ ++ +R+ +G V Q LF ++ +NI G K + E A EL AK
Sbjct: 76 QKGLIRQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATARARELL--AK-- 131
Query: 506 DKLPQGIDTLVGEHGTQ------LSGGQKQRIAIARAILKDPRILLLDEATSALDAESEK 559
VG G + LSGGQ+QR+AIARA+ P ++L DE TSALD E
Sbjct: 132 ----------VGLAGKETSYPRRLSGGQQQRVAIARALAMRPEVILFDEPTSALDPE--- 178
Query: 560 VVQEALDRIMV----NRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVEDPE 612
+V E L+ I RT VIV H +S R+ AD + +G+IVE+G L DP+
Sbjct: 179 LVGEVLNTIRQLAQEKRTMVIVTHEMSFARDVADRAIFMDQGRIVEQGPAKALFADPQ 236
|
Length = 250 |
| >gnl|CDD|172740 PRK14252, PRK14252, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 105 bits (262), Expect = 8e-25
Identities = 80/236 (33%), Positives = 119/236 (50%), Gaps = 34/236 (14%)
Query: 416 ALVGQSGSGKSTVISLIERFYD--PQ---AGEVLI--DGINL--KEFQLQWIRKKIGLVS 466
AL+G SG GKST + R +D P GE+++ D +N+ E +R +I +V
Sbjct: 46 ALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILSPEVDPIEVRMRISMVF 105
Query: 467 QEPVLFTGSIKDNIAYG------KDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHG 520
Q+P F SI +N+AYG K + EE RV L NAA L + +G+
Sbjct: 106 QKPNPFPKSIFENVAYGLRIRGVKRRSILEE-RVENALRNAA-----LWDEVKDRLGDLA 159
Query: 521 TQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHR 580
LSGGQ+QR+ IARA+ DP ILL DE TSALD + ++E + + T +IV H
Sbjct: 160 FNLSGGQQQRLCIARALATDPEILLFDEPTSALDPIATASIEELISDLKNKVTILIVTHN 219
Query: 581 L-STVRNADMIAVIHRGKIVEKGTHSKLVEDPEGAYSQLIRLQEANKESEQTIDGQ 635
+ R +D A ++ G+++E G + P+ NK++E I G+
Sbjct: 220 MQQAARVSDYTAYMYMGELIEFGATDTIFIKPK------------NKQTEDYITGR 263
|
Length = 265 |
| >gnl|CDD|226905 COG4525, TauB, ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 104 bits (262), Expect = 9e-25
Identities = 58/184 (31%), Positives = 92/184 (50%), Gaps = 24/184 (13%)
Query: 389 VYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGI 448
+ SY +P S++I+SG ++G SG GK+T+++LI F P G + ++G
Sbjct: 9 LSLSYEGKP-RSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGR 67
Query: 449 NLKEFQLQWIRKKIGLVSQEPVLFTG-SIKDNIAYGKDDATTEEIRVATELANAAKFIDK 507
+++ + G+V Q L ++ DN+A+G I A A + +
Sbjct: 68 -----RIEGPGAERGVVFQNEALLPWLNVIDNVAFGLQLRG---IEKAQRREIAHQML-- 117
Query: 508 LPQGIDTLVGEHGT------QLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVV 561
LVG G QLSGG +QR+ IARA+ +P++LLLDE ALDA + + +
Sbjct: 118 ------ALVGLEGAEHKYIWQLSGGMRQRVGIARALAVEPQLLLLDEPFGALDALTREQM 171
Query: 562 QEAL 565
QE L
Sbjct: 172 QELL 175
|
Length = 259 |
| >gnl|CDD|172761 PRK14273, PRK14273, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 104 bits (260), Expect = 9e-25
Identities = 73/238 (30%), Positives = 118/238 (49%), Gaps = 20/238 (8%)
Query: 406 SISISSGTTAALVGQSGSGKSTVISLIERFYD-----PQAGEVLIDGINL--KEFQLQWI 458
+I I + AL+G SG GKST + + R D G V+ +G N+ F + +
Sbjct: 27 NIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFDILEL 86
Query: 459 RKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGE 518
R+KIG+V Q P F SI DNI+YG T++ + E+ + L + +
Sbjct: 87 RRKIGMVFQTPNPFLMSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEVKDKLNT 146
Query: 519 HGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVA 578
+ LSGGQ+QR+ IAR + +P ++L+DE TSALD S ++E + + + T +IV
Sbjct: 147 NALSLSGGQQQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLKESYTIIIVT 206
Query: 579 HRLSTV-RNADMIAVIHRGKIVEKGTHSKLVEDPEGAYSQLIRLQEANKESEQTIDGQ 635
H + R +D A G I E+ + +L +P+ N ++E+ I G+
Sbjct: 207 HNMQQAGRISDRTAFFLNGCIEEESSTDELFFNPK------------NTKTEEYISGK 252
|
Length = 254 |
| >gnl|CDD|188098 TIGR00957, MRP_assoc_pro, multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Score = 111 bits (280), Expect = 1e-24
Identities = 91/303 (30%), Positives = 148/303 (48%), Gaps = 35/303 (11%)
Query: 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 443
I + + F++ AR +G + SI G A+VGQ G GKS+++S + D G V
Sbjct: 637 ITVHNATFTW-ARDLPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHV 695
Query: 444 LIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAK 503
+ G + V Q+ + S+++NI +GK E L A
Sbjct: 696 HMKG-------------SVAYVPQQAWIQNDSLRENILFGK---ALNEKYYQQVLEACAL 739
Query: 504 FID--KLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVV 561
D LP G T +GE G LSGGQKQR+++ARA+ + I L D+ SA+DA K +
Sbjct: 740 LPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHI 799
Query: 562 QEAL---DRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVEDPEGAYSQL 618
E + + ++ N+T ++V H +S + D+I V+ GKI E G++ +L+ +GA+++
Sbjct: 800 FEHVIGPEGVLKNKTRILVTHGISYLPQVDVIIVMSGGKISEMGSYQELL-QRDGAFAEF 858
Query: 619 IRLQEANKESEQTID--------GQRKSEISMES--LRHSSHRMSLRRSISRGSSI-GNS 667
+R A E + ++ G+ K +E+ L L+R +S SS G+
Sbjct: 859 LR-TYAPDEQQGHLEDSWTALVSGEGKEAKLIENGMLVTDVVGKQLQRQLSASSSDSGDQ 917
Query: 668 SRH 670
SRH
Sbjct: 918 SRH 920
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved [Transport and binding proteins, Other]. Length = 1522 |
| >gnl|CDD|183226 PRK11607, potG, putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 107 bits (268), Expect = 1e-24
Identities = 76/221 (34%), Positives = 122/221 (55%), Gaps = 23/221 (10%)
Query: 406 SISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLV 465
S++I G AL+G SG GKST++ ++ F P AG++++DG++L + ++ I ++
Sbjct: 39 SLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLS--HVPPYQRPINMM 96
Query: 466 SQEPVLFTG-SIKDNIAYG--KDDATTEEI--RVAT--ELANAAKFIDKLPQGIDTLVGE 518
Q LF +++ NIA+G +D EI RV L + +F + P
Sbjct: 97 FQSYALFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQEFAKRKPH-------- 148
Query: 519 HGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQ-EALDRI-MVNRTTVI 576
QLSGGQ+QR+A+AR++ K P++LLLDE ALD + +Q E +D + V T V+
Sbjct: 149 ---QLSGGQRQRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVM 205
Query: 577 VAH-RLSTVRNADMIAVIHRGKIVEKGTHSKLVEDPEGAYS 616
V H + + A IA+++RGK V+ G ++ E P YS
Sbjct: 206 VTHDQEEAMTMAGRIAIMNRGKFVQIGEPEEIYEHPTTRYS 246
|
Length = 377 |
| >gnl|CDD|172734 PRK14246, PRK14246, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 104 bits (260), Expect = 1e-24
Identities = 69/228 (30%), Positives = 124/228 (54%), Gaps = 8/228 (3%)
Query: 398 NEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERF---YDPQA---GEVLIDGINLK 451
++ I +I I + + ++G SGSGKST++ ++ R YD + G+VL G ++
Sbjct: 22 DKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIF 81
Query: 452 EFQLQWIRKKIGLVSQEPVLFTG-SIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQ 510
+ +RK++G+V Q+P F SI DNIAY +E R ++ L +
Sbjct: 82 QIDAIKLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWK 141
Query: 511 GIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMV 570
+ + +QLSGGQ+QR+ IARA+ P++LL+DE TS +D + + +++ + +
Sbjct: 142 EVYDRLNSPASQLSGGQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKN 201
Query: 571 NRTTVIVAHRLSTV-RNADMIAVIHRGKIVEKGTHSKLVEDPEGAYSQ 617
VIV+H V R AD +A ++ G++VE G+ +++ P+ ++
Sbjct: 202 EIAIVIVSHNPQQVARVADYVAFLYNGELVEWGSSNEIFTSPKNELTE 249
|
Length = 257 |
| >gnl|CDD|184205 PRK13646, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 104 bits (262), Expect = 1e-24
Identities = 73/245 (29%), Positives = 122/245 (49%), Gaps = 29/245 (11%)
Query: 384 IELRDVYFSY-PARPNE-QIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAG 441
I +V ++Y P E Q + G A+VGQ+GSGKST+I I P G
Sbjct: 3 IRFDNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTG 62
Query: 442 EVLIDGINL----KEFQLQWIRKKIGLVSQ--EPVLFTGSIKDNIAYGK-------DDAT 488
V +D I + K+ ++ +RK+IG+V Q E LF +++ I +G D+
Sbjct: 63 TVTVDDITITHKTKDKYIRPVRKRIGMVFQFPESQLFEDTVEREIIFGPKNFKMNLDEVK 122
Query: 489 TEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDE 548
R+ +L + + + P Q+SGGQ ++IAI + +P I++LDE
Sbjct: 123 NYAHRLLMDLGFSRDVMSQSP-----------FQMSGGQMRKIAIVSILAMNPDIIVLDE 171
Query: 549 ATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTV-RNADMIAVIHRGKIVEKGTHS 605
T+ LD +S++ V L + N+T ++V+H ++ V R AD + V+ G IV + +
Sbjct: 172 PTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMNEVARYADEVIVMKEGSIVSQTSPK 231
Query: 606 KLVED 610
+L +D
Sbjct: 232 ELFKD 236
|
Length = 286 |
| >gnl|CDD|234357 TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 110 bits (276), Expect = 2e-24
Identities = 94/384 (24%), Positives = 159/384 (41%), Gaps = 87/384 (22%)
Query: 816 EHSSGAIGARLSADAASVRALVGDALARIVQNISTAAAGLIIAFTASWQLAL----IILV 871
++S+G + +R + +R ++ + + + A L + F SW+LAL + LV
Sbjct: 229 QYSTGDLASRAMG-ISQIRRILSGSTLTTLLSGIFALLNLGLMFYYSWKLALVAVALALV 287
Query: 872 MLPLIGVSGYTQMKFMKGFSADAKMKYEEASQVANDAVGSIRTVASF---CAEEKVMQLY 928
+ + V G Q++ + E + +++ V I ++ AE +
Sbjct: 288 AIAVTLVLGLLQVRK-------ERRLLELSGKISGLTVQLINGISKLRVAGAENRA---- 336
Query: 929 KKKCEAPMKTGIRQGMVSGGGFGASFFLLFAFYAASF------YAGARLVEDGKATFSDV 982
FA +A F A+ +E+ F+ V
Sbjct: 337 -----------------------------FARWAKLFSRQRKLELSAQRIENLLTVFNAV 367
Query: 983 FKVFFSLTMTAIGISQ--SSSFSSDSNKAKSAAASIF---------AIIDRESKIDPSDE 1031
V S + A IS + S S A + A F +I + I +
Sbjct: 368 LPVLTSAALFAAAISLLGGAGLSLGSFLAFNTAFGSFSGAVTQLSNTLISILAVIPLWER 427
Query: 1032 SGTILE-------------DVKGEIELHHVSFKYPSRPD-VQVFRDLNLKIRAGKTVALV 1077
+ ILE + G IE+ V+F+Y RPD + D++L+I G+ VA+V
Sbjct: 428 AKPILEALPEVDEAKTDPGKLSGAIEVDRVTFRY--RPDGPLILDDVSLQIEPGEFVAIV 485
Query: 1078 GESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRA 1137
G SGSGKST++ LL F P++G + DG ++ L ++ +R+Q+G+V Q L + +I
Sbjct: 486 GPSGSGKSTLLRLLLGFETPESGSVFYDGQDLAGLDVQAVRRQLGVVLQNGRLMSGSIFE 545
Query: 1138 NIAYGKGGDA--TEAEIQAASEMA 1159
NIA G A T E A+ MA
Sbjct: 546 NIA----GGAPLTLDEAWEAARMA 565
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal leader sequence cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, members of protein families related to nitrile hydratase alpha subunit or to nif11 have undergone paralogous family expansions, with members possessing a putative bacteriocin cleavage region ending with a classic Gly-Gly motif. Those sets of putative bacteriocins, members of this protein family and its partners TIGR03794 and TIGR03796, and cyclodehydratase/docking scaffold fusion proteins of thiazole/oxazole biosynthesis frequently show correlated species distribution and co-clustering within many of those genomes [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 686 |
| >gnl|CDD|236898 PRK11308, dppF, dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 105 bits (265), Expect = 2e-24
Identities = 81/241 (33%), Positives = 125/241 (51%), Gaps = 48/241 (19%)
Query: 404 GFSISISSGTTAALVGQSGSGKSTV---ISLIERFYDPQAGEVLIDGINLKEF---QLQW 457
G S ++ G T A+VG+SG GKST+ +++IE P GE+ G +L + +
Sbjct: 33 GVSFTLERGKTLAVVGESGCGKSTLARLLTMIET---PTGGELYYQGQDLLKADPEAQKL 89
Query: 458 IRKKIGLVSQEPVLFTGSIKDNIAYG------KDDATTEE-IRVATELANAAKFIDKLPQ 510
+R+KI +V Q P YG K EE + + T L +AA+ +K
Sbjct: 90 LRQKIQIVFQNP------------YGSLNPRKKVGQILEEPLLINTSL-SAAERREKA-L 135
Query: 511 GIDTLVG---EHGTQ----LSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQ- 562
+ VG EH + SGGQ+QRIAIARA++ DP +++ DE SALD VQ
Sbjct: 136 AMMAKVGLRPEHYDRYPHMFSGGQRQRIAIARALMLDPDVVVADEPVSALDVS----VQA 191
Query: 563 EALDRIM-----VNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVEDPEGAYS 616
+ L+ +M + + V ++H LS V + AD + V++ G+ VEKGT ++ +P Y+
Sbjct: 192 QVLNLMMDLQQELGLSYVFISHDLSVVEHIADEVMVMYLGRCVEKGTKEQIFNNPRHPYT 251
Query: 617 Q 617
Q
Sbjct: 252 Q 252
|
Length = 327 |
| >gnl|CDD|184590 PRK14249, PRK14249, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 103 bits (258), Expect = 2e-24
Identities = 73/238 (30%), Positives = 118/238 (49%), Gaps = 13/238 (5%)
Query: 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAG-- 441
I++R V F Y Q+ ++ A++G SG GKST++ + R D +G
Sbjct: 5 IKIRGVNFFYH---KHQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGAR 61
Query: 442 ---EVLIDGINLKEFQLQWI--RKKIGLVSQEPVLFTGSIKDNIAYG-KDDATTEEIRVA 495
VL+D N+ L + RK++G+V Q+P F SI DN+A+G + TT + R+
Sbjct: 62 LEGAVLLDNENIYSPNLDVVNLRKRVGMVFQQPNPFPKSIFDNVAFGPRMLGTTAQSRL- 120
Query: 496 TELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDA 555
E+ + L + + + G LSGGQ+QR+ IAR + +P ++L+DE SALD
Sbjct: 121 DEVVEKSLRQAALWDEVKDNLHKSGLALSGGQQQRLCIARVLAIEPEVILMDEPCSALDP 180
Query: 556 ESEKVVQEALDRIMVNRTTVIVAHRL-STVRNADMIAVIHRGKIVEKGTHSKLVEDPE 612
S ++E + + N T IV H + R +D + G +VE G ++ P
Sbjct: 181 VSTMRIEELMQELKQNYTIAIVTHNMQQAARASDWTGFLLTGDLVEYGRTGEIFSRPR 238
|
Length = 251 |
| >gnl|CDD|181906 PRK09493, glnQ, glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 102 bits (257), Expect = 3e-24
Identities = 77/251 (30%), Positives = 130/251 (51%), Gaps = 29/251 (11%)
Query: 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 443
IE ++V + Q+ ++I G ++G SGSGKST++ I + + +G++
Sbjct: 2 IEFKNVSKHFGP---TQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDL 58
Query: 444 LIDGINLK--EFQLQWIRKKIGLVSQEPVLFTG-SIKDNIAYGK---DDATTEEIRVATE 497
++DG+ + + + IR++ G+V Q+ LF + +N+ +G A+ EE A +
Sbjct: 59 IVDGLKVNDPKVDERLIRQEAGMVFQQFYLFPHLTALENVMFGPLRVRGASKEE---AEK 115
Query: 498 LANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAES 557
A + K+ G+ + ++LSGGQ+QR+AIARA+ P+++L DE TSALD E
Sbjct: 116 QARE--LLAKV--GLAERAHHYPSELSGGQQQRVAIARALAVKPKLMLFDEPTSALDPEL 171
Query: 558 E----KVVQEALDRIMVNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVEDPE 612
KV+Q+ + M T VIV H + A + I +G+I E G L+++P
Sbjct: 172 RHEVLKVMQDLAEEGM---TMVIVTHEIGFAEKVASRLIFIDKGRIAEDGDPQVLIKNPP 228
Query: 613 GAYSQLIRLQE 623
RLQE
Sbjct: 229 SQ-----RLQE 234
|
Length = 240 |
| >gnl|CDD|237454 PRK13634, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 104 bits (261), Expect = 3e-24
Identities = 74/249 (29%), Positives = 126/249 (50%), Gaps = 31/249 (12%)
Query: 383 DIELRDVYFSYPAR-PNEQI-FSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQA 440
DI + V Y + P E+ ++SI SG+ A++G +GSGKST++ + P +
Sbjct: 2 DITFQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTS 61
Query: 441 GEVLIDGINL----KEFQLQWIRKKIGLVSQ--EPVLFTGSIKDNIAYG-------KDDA 487
G V I + K +L+ +RKK+G+V Q E LF +++ +I +G ++DA
Sbjct: 62 GTVTIGERVITAGKKNKKLKPLRKKVGIVFQFPEHQLFEETVEKDICFGPMNFGVSEEDA 121
Query: 488 TTEEIRVATELANAAKFIDKLPQGIDTLVGEHGT-QLSGGQKQRIAIARAILKDPRILLL 546
A + I+ + G+ + +LSGGQ +R+AIA + +P +L+L
Sbjct: 122 ----------KQKAREMIELV--GLPEELLARSPFELSGGQMRRVAIAGVLAMEPEVLVL 169
Query: 547 DEATSALDAESEKVVQEALDRIM--VNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGT 603
DE T+ LD + K + E ++ TTV+V H + AD I V+H+G + +GT
Sbjct: 170 DEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSMEDAARYADQIVVMHKGTVFLQGT 229
Query: 604 HSKLVEDPE 612
++ DP+
Sbjct: 230 PREIFADPD 238
|
Length = 290 |
| >gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 107 bits (271), Expect = 3e-24
Identities = 79/259 (30%), Positives = 122/259 (47%), Gaps = 47/259 (18%)
Query: 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 443
+ELR + S+ + G S+++ G AL+G++G+GKST++ ++ Y P +GE+
Sbjct: 9 LELRGISKSFGG---VKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEI 65
Query: 444 LIDGINLKEFQLQWIRKK----IGLVSQEPVLFTG-SIKDNIAYGK---------DDATT 489
LIDG K R I V QE L S+ +NI G+ D
Sbjct: 66 LIDG---KPVAFSSPRDALAAGIATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAM 122
Query: 490 EEIRVATELANAAKFIDKLPQGID--TLVGEHGTQLSGGQKQRIAIARAILKDPRILLLD 547
A + + +L ID TLVG+ LS Q+Q + IARA+ D R+L+LD
Sbjct: 123 RRR--------ARELLARLGLDIDPDTLVGD----LSIAQRQMVEIARALSFDARVLILD 170
Query: 548 EATSALD-AESE---KVVQEALDRIMVNRTTVIVAHRLSTV-RNADMIAVIHRGKIVEKG 602
E T+AL E+E +++ + + ++HRL V AD I V+ G++V G
Sbjct: 171 EPTAALTVKETERLFDLIRRLKAQ---GVAIIYISHRLDEVFEIADRITVLRDGRVV--G 225
Query: 603 THSKLVEDPEGAYSQLIRL 621
T E E +L+RL
Sbjct: 226 TRPTAAETSE---DELVRL 241
|
Length = 500 |
| >gnl|CDD|172760 PRK14272, PRK14272, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 102 bits (256), Expect = 3e-24
Identities = 73/227 (32%), Positives = 118/227 (51%), Gaps = 17/227 (7%)
Query: 398 NEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYD--PQA---GEVLIDGINLKE 452
++Q ++ + GT AL+G SG GK+T + I R +D P A G +L+DG ++
Sbjct: 16 DKQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYG 75
Query: 453 FQLQWI--RKKIGLVSQEPVLF-TGSIKDNIAYGKDDATTEE----IRVATELANAAKFI 505
++ + R+++G+V Q+P F T S+ DN+ G A + + VA A
Sbjct: 76 PRVDPVAMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALW 135
Query: 506 DKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEAL 565
D++ + T T LSGGQ+QR+ IARA+ +P ILL+DE TSALD S +++ +
Sbjct: 136 DEVKDRLKT----PATGLSGGQQQRLCIARALAVEPEILLMDEPTSALDPASTARIEDLM 191
Query: 566 DRIMVNRTTVIVAHRL-STVRNADMIAVIHRGKIVEKGTHSKLVEDP 611
+ T +IV H + R +D + G +VE G +L +P
Sbjct: 192 TDLKKVTTIIIVTHNMHQAARVSDTTSFFLVGDLVEHGPTDQLFTNP 238
|
Length = 252 |
| >gnl|CDD|184208 PRK13649, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 103 bits (259), Expect = 3e-24
Identities = 79/241 (32%), Positives = 131/241 (54%), Gaps = 22/241 (9%)
Query: 384 IELRDVYFSYPA-RPNE-QIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAG 441
I L++V ++Y A P E + +++I G+ A +G +GSGKST++ L+ + P G
Sbjct: 3 INLQNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQG 62
Query: 442 EVLIDGINL----KEFQLQWIRKKIGLVSQ--EPVLFTGSIKDNIAYGKDD--ATTEEIR 493
V +D + K ++ IRKK+GLV Q E LF ++ ++A+G + + EE
Sbjct: 63 SVRVDDTLITSTSKNKDIKQIRKKVGLVFQFPESQLFEETVLKDVAFGPQNFGVSQEE-- 120
Query: 494 VATELANAAKFIDKLPQ-GID-TLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATS 551
A LA +KL GI +L ++ +LSGGQ +R+AIA + +P+IL+LDE T+
Sbjct: 121 -AEALAR-----EKLALVGISESLFEKNPFELSGGQMRRVAIAGILAMEPKILVLDEPTA 174
Query: 552 ALDAESEKVVQEALDRIMVN-RTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVE 609
LD + K + ++ + T V+V H + V N AD + V+ +GK+V G + +
Sbjct: 175 GLDPKGRKELMTLFKKLHQSGMTIVLVTHLMDDVANYADFVYVLEKGKLVLSGKPKDIFQ 234
Query: 610 D 610
D
Sbjct: 235 D 235
|
Length = 280 |
| >gnl|CDD|132302 TIGR03258, PhnT, 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Score = 105 bits (263), Expect = 3e-24
Identities = 70/237 (29%), Positives = 111/237 (46%), Gaps = 17/237 (7%)
Query: 382 GDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQA- 440
G I + + +Y A + S+ I +G AL+G+SG GK+T++ I F
Sbjct: 4 GGIRIDHLRVAYGAN---TVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGL 60
Query: 441 -GEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTG-SIKDNIAYGKDDATTEEIRVATEL 498
G + I +L ++ + L+ Q LF ++DN+A+G + +A +
Sbjct: 61 TGRIAIADRDLT--HAPPHKRGLALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAERV 118
Query: 499 ANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESE 558
A+A K + G+ QLSGG +QRIAIARAI +P +LLLDE SALDA
Sbjct: 119 ADALKLV-----GLGDAAAHLPAQLSGGMQQRIAIARAIAIEPDVLLLDEPLSALDANIR 173
Query: 559 KVVQE---ALDRIMVNRTTVIVAH-RLSTVRNADMIAVIHRGKIVEKGTHSKLVEDP 611
++E AL + T + V H + + AD ++ G++ G L + P
Sbjct: 174 ANMREEIAALHEELPELTILCVTHDQDDALTLADKAGIMKDGRLAAHGEPQALYDAP 230
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. Length = 362 |
| >gnl|CDD|184587 PRK14241, PRK14241, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 102 bits (256), Expect = 4e-24
Identities = 80/255 (31%), Positives = 120/255 (47%), Gaps = 47/255 (18%)
Query: 406 SISISSGTTAALVGQSGSGKSTVISLIERFYD--PQA---GEVLIDGINL--KEFQLQWI 458
+++I + A +G SG GKSTV+ + R ++ P A GEVL+DG +L +
Sbjct: 24 NLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDPVAV 83
Query: 459 RKKIGLVSQEPVLF-TGSIKDNIAYG----------KDDATTEEIRVATELANAAKFIDK 507
R+ IG+V Q P F T SI+DN+ G D E+ L N K D+
Sbjct: 84 RRTIGMVFQRPNPFPTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWNEVK--DR 141
Query: 508 LPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDR 567
L + G LSGGQ+QR+ IARAI +P +LL+DE SALD S +++ ++
Sbjct: 142 L--------DKPGGGLSGGQQQRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINE 193
Query: 568 IMVNRTTVIVAHRL-STVRNAD------MIAVIHRGKIVEKGTHSKLVEDPEGAYSQLIR 620
+ + T VIV H + R +D + A G++VE K+ +P
Sbjct: 194 LKQDYTIVIVTHNMQQAARVSDQTAFFNLEATGKPGRLVEIDDTEKIFSNP--------- 244
Query: 621 LQEANKESEQTIDGQ 635
K +E I G+
Sbjct: 245 ---TQKATEDYISGR 256
|
Length = 258 |
| >gnl|CDD|213258 cd03291, ABCC_CFTR1, ATP-binding cassette domain of the cystic fibrosis transmembrane regulator, subfamily C | Back alignment and domain information |
|---|
Score = 103 bits (258), Expect = 4e-24
Identities = 74/247 (29%), Positives = 127/247 (51%), Gaps = 24/247 (9%)
Query: 406 SISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLV 465
++ I G A+ G +GSGK++++ LI +P G++ G +I
Sbjct: 57 NLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSG-------------RISFS 103
Query: 466 SQEPVLFTGSIKDNIAYG--KDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQL 523
SQ + G+IK+NI +G D+ + + A +L I K P+ +T++GE G L
Sbjct: 104 SQFSWIMPGTIKENIIFGVSYDEYRYKSVVKACQLEED---ITKFPEKDNTVLGEGGITL 160
Query: 524 SGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEA-LDRIMVNRTTVIVAHRLS 582
SGGQ+ RI++ARA+ KD + LLD LD +EK + E+ + ++M N+T ++V ++
Sbjct: 161 SGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEKEIFESCVCKLMANKTRILVTSKME 220
Query: 583 TVRNADMIAVIHRGKIVEKGTHSKLVEDPEGAYSQLIRLQEANKESEQTIDGQRKSEISM 642
++ AD I ++H G GT S+L S+L+ ++ S +R++ I
Sbjct: 221 HLKKADKILILHEGSSYFYGTFSELQSLRPDFSSKLMGYDTFDQFSA-----ERRNSILT 275
Query: 643 ESLRHSS 649
E+LR S
Sbjct: 276 ETLRRFS 282
|
The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. Length = 282 |
| >gnl|CDD|172743 PRK14255, PRK14255, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 102 bits (255), Expect = 5e-24
Identities = 79/266 (29%), Positives = 121/266 (45%), Gaps = 35/266 (13%)
Query: 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYD--PQA- 440
I DV+ Y + G + + AL+G SG GKST + + R D P
Sbjct: 6 ITSSDVHLFYGKF---EALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVT 62
Query: 441 --GEVLIDGINL--KEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYG------KDDATTE 490
G V + G N+ + +RK++G+V Q+P F SI +N+ YG KD A +
Sbjct: 63 ITGNVSLRGQNIYAPNEDVVQLRKQVGMVFQQPNPFPFSIYENVIYGLRLAGVKDKAVLD 122
Query: 491 EIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEAT 550
E V T L AA + + + + E LSGGQ+QR+ IAR + P ++LLDE T
Sbjct: 123 EA-VETSLKQAAIWDE-----VKDHLHESALSLSGGQQQRVCIARVLAVKPDVILLDEPT 176
Query: 551 SALDAESEKVVQEALDRIMVNRTTVIVAHRLSTV-RNADMIAVIHRGKIVEKGTHSKLVE 609
SALD S ++ L + T ++V H + R +D A G ++E ++
Sbjct: 177 SALDPISSTQIENMLLELRDQYTIILVTHSMHQASRISDKTAFFLTGNLIEFADTKQMFL 236
Query: 610 DPEGAYSQLIRLQEANKESEQTIDGQ 635
+P+ KE+E I G+
Sbjct: 237 NPK------------EKETEDYITGR 250
|
Length = 252 |
| >gnl|CDD|184585 PRK14239, PRK14239, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 102 bits (255), Expect = 6e-24
Identities = 76/237 (32%), Positives = 118/237 (49%), Gaps = 38/237 (16%)
Query: 416 ALVGQSGSGKSTVISLIERFYD--PQ---AGEVLIDGINLKEFQLQW--IRKKIGLVSQE 468
AL+G SGSGKST++ I R D P+ G ++ +G N+ + +RK+IG+V Q+
Sbjct: 35 ALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDTVDLRKEIGMVFQQ 94
Query: 469 PVLFTGSIKDNIAYG------KDDATTEEIRVATELANAA---KFIDKLPQGIDTLVGEH 519
P F SI +N+ YG KD +E V L A+ + D+L D+ +G
Sbjct: 95 PNPFPMSIYENVVYGLRLKGIKDKQVLDEA-VEKSLKGASIWDEVKDRLH---DSALG-- 148
Query: 520 GTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAH 579
LSGGQ+QR+ IAR + P+I+LLDE TSALD S ++E L + + T ++V
Sbjct: 149 ---LSGGQQQRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKDDYTMLLVTR 205
Query: 580 RLSTV-RNADMIAVIHRGKIVEKGTHSKLVEDPEGAYSQLIRLQEANKESEQTIDGQ 635
+ R +D G ++E ++ +P +KE+E I G+
Sbjct: 206 SMQQASRISDRTGFFLDGDLIEYNDTKQMFMNP------------KHKETEDYISGK 250
|
Length = 252 |
| >gnl|CDD|172745 PRK14257, PRK14257, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 104 bits (259), Expect = 7e-24
Identities = 85/293 (29%), Positives = 140/293 (47%), Gaps = 38/293 (12%)
Query: 363 RKPEIDAYDTKGKI-LDDIRGDI------ELRDVYFSYPARPNEQIFSGFSISISSGTTA 415
+K E+ + K K +D ++ D E+R+ F Y R + + ++ I
Sbjct: 53 KKAELKQFLNKKKTQVDLLKEDFNHANVFEIRNFNFWYMNR-TKHVLHDLNLDIKRNKVT 111
Query: 416 ALVGQSGSGKSTVISLIERFYD-----PQAGEVLIDGINLKEFQLQWI--RKKIGLVSQE 468
A +G SG GKST + + + D GE+ G N + ++ + R +IG+V Q+
Sbjct: 112 AFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKISSLELRTRIGMVFQK 171
Query: 469 PVLFTGSIKDNIAYGK-----DDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQL 523
P F SI DN+AYG +D E V L +AA + D++ +D + G L
Sbjct: 172 PTPFEMSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAALW-DEVKDDLD----KAGNAL 226
Query: 524 SGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLST 583
SGGQ+QR+ IARAI +P +LL+DE TSALD + ++E + + + +IV H ++
Sbjct: 227 SGGQQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKKKYSIIIVTHSMAQ 286
Query: 584 V-RNADMIAVIHRGKIVEKGTHSKLVEDPEGAYSQLIRLQEANKESEQTIDGQ 635
R +D ++G I E G ++ I + NK ++ I G+
Sbjct: 287 AQRISDETVFFYQGWIEEAGE------------TKTIFIHPKNKRTKDYISGK 327
|
Length = 329 |
| >gnl|CDD|226628 COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 103 bits (260), Expect = 9e-24
Identities = 62/195 (31%), Positives = 103/195 (52%), Gaps = 19/195 (9%)
Query: 416 ALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINL----KEFQLQWIRKKIGLVSQEPVL 471
AL G SGSGK+++I++I P G + ++G L K L +++IG V Q+ L
Sbjct: 28 ALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARL 87
Query: 472 FTG-SIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQR 530
F +++ N+ YG + + + + L GI+ L+ + LSGG+KQR
Sbjct: 88 FPHYTVRGNLRYGMWKSMRAQF---------DQLVALL--GIEHLLDRYPGTLSGGEKQR 136
Query: 531 IAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIM--VNRTTVIVAHRLSTV-RNA 587
+AI RA+L P +LL+DE ++LD ++ + L+R+ +N + V+H L V R A
Sbjct: 137 VAIGRALLTAPELLLMDEPLASLDLPRKREILPYLERLRDEINIPILYVSHSLDEVLRLA 196
Query: 588 DMIAVIHRGKIVEKG 602
D + V+ GK+ G
Sbjct: 197 DRVVVLENGKVKASG 211
|
Length = 352 |
| >gnl|CDD|234041 TIGR02868, CydC, thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Score = 106 bits (266), Expect = 1e-23
Identities = 95/375 (25%), Positives = 159/375 (42%), Gaps = 49/375 (13%)
Query: 818 SSGAIGARLSADAAS-----VRALVGDALARIVQNISTAAAGLIIAFTASWQLALIILVM 872
G + RL AD + VR +V +A +V + AA ++ S ALI+
Sbjct: 108 RRGDLLGRLGADVDALQDLYVRVIVPAGVALVVGAAAVAAIAVL-----SVPAALILAAG 162
Query: 873 LPLIGVSGYTQMKFMKGFSADAKMKYEEASQVANDAVGSIRTVASFCAEEKV----MQLY 928
L L G S A E+A + + T A A E V +
Sbjct: 163 LLLAGF-------VAPLVSLRAARAAEQALARLRGELAAQLTDALDGAAELVASGALPAA 215
Query: 929 KKKCEAPMK--TGIRQGMVSGGGFGASFFLLFAFYA--ASFYAGARLVEDGK---ATFS- 980
+ E + T + + GA+ LL A A + +AG V DG+ T +
Sbjct: 216 LAQVEEADRELTRAERRAAAATALGAALTLLAAGLAVLGALWAGGPAVADGRLAPVTLAV 275
Query: 981 ------DVFKVFFSLTMTAIGISQSSSFSSDSNKAKSAAASIFAIIDRESKI-DPSDESG 1033
F+ F +L A +++ ++AA I ++D + + S +
Sbjct: 276 LVLLPLAAFEAFAALPAAAQQLTR----------VRAAAERIVEVLDAAGPVAEGSAPAA 325
Query: 1034 TILEDVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQR 1093
+ K +EL +S YP V ++L + G+ VA++G SGSGKST+++ L
Sbjct: 326 GAVGLGKPTLELRDLSAGYP--GAPPVLDGVSLDLPPGERVAILGPSGSGKSTLLATLAG 383
Query: 1094 FYDPDAGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQ 1153
DP G +TLDGV + L +R+++ + +Q+ LF+ T+R N+ + DAT+ E+
Sbjct: 384 LLDPLQGEVTLDGVPVSSLDQDEVRRRVSVCAQDAHLFDTTVRENLRLAR-PDATDEELW 442
Query: 1154 AASEMANAHKFICSL 1168
AA E ++ +L
Sbjct: 443 AALERVGLADWLRAL 457
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Length = 530 |
| >gnl|CDD|215595 PLN03130, PLN03130, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 108 bits (272), Expect = 1e-23
Identities = 68/228 (29%), Positives = 120/228 (52%), Gaps = 20/228 (8%)
Query: 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 443
I +++ YFS+ ++ S ++ + G+ A+VG +G GK+++IS + P++
Sbjct: 615 ISIKNGYFSWDSKAERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPRSDAS 674
Query: 444 LIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKD-DATTEE--IRVATELAN 500
++ IR + V Q +F +++DNI +G D E I V T L +
Sbjct: 675 VV------------IRGTVAYVPQVSWIFNATVRDNILFGSPFDPERYERAIDV-TALQH 721
Query: 501 AAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAE-SEK 559
+D LP G T +GE G +SGGQKQR+++ARA+ + + + D+ SALDA +
Sbjct: 722 D---LDLLPGGDLTEIGERGVNISGGQKQRVSMARAVYSNSDVYIFDDPLSALDAHVGRQ 778
Query: 560 VVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKL 607
V + + + +T V+V ++L + D I ++H G I E+GT+ +L
Sbjct: 779 VFDKCIKDELRGKTRVLVTNQLHFLSQVDRIILVHEGMIKEEGTYEEL 826
|
Length = 1622 |
| >gnl|CDD|172200 PRK13652, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 102 bits (255), Expect = 1e-23
Identities = 70/234 (29%), Positives = 126/234 (53%), Gaps = 12/234 (5%)
Query: 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 443
IE RD+ +SY +++ + + + A++G +G+GKST+ P +G V
Sbjct: 4 IETRDLCYSY--SGSKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSV 61
Query: 444 LIDGINLKEFQLQWIRKKIGLVSQEP--VLFTGSIKDNIAYGKDDATTEEIRVATELANA 501
LI G + + ++ +RK +GLV Q P +F+ +++ +IA+G + +E VA +++A
Sbjct: 62 LIRGEPITKENIREVRKFVGLVFQNPDDQIFSPTVEQDIAFGPINLGLDEETVAHRVSSA 121
Query: 502 AKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVV 561
+ G++ L LSGG+K+R+AIA I +P++L+LDE T+ LD + K +
Sbjct: 122 LHML-----GLEELRDRVPHHLSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKEL 176
Query: 562 QEALDRIMVN--RTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVEDPE 612
+ L+ + T + H+L V AD I V+ +G+IV GT ++ P+
Sbjct: 177 IDFLNDLPETYGMTVIFSTHQLDLVPEMADYIYVMDKGRIVAYGTVEEIFLQPD 230
|
Length = 277 |
| >gnl|CDD|182732 PRK10789, PRK10789, putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Score = 105 bits (265), Expect = 2e-23
Identities = 56/161 (34%), Positives = 91/161 (56%), Gaps = 6/161 (3%)
Query: 1011 SAAAS-IFAIIDRESKIDPSDESGTILEDVKGEIELHHVSFKYPSRPDVQVFRDLNLKIR 1069
SAA S I A++ + E + + +GE++++ F YP D ++N ++
Sbjct: 284 SAAYSRIRAMLAEAPVVKDGSEP---VPEGRGELDVNIRQFTYPQT-DHPALENVNFTLK 339
Query: 1070 AGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMGLVSQEPV 1129
G+ + + G +GSGKST++SL+QR +D G I + + KLQL R ++ +VSQ P
Sbjct: 340 PGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRSRLAVVSQTPF 399
Query: 1130 LFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQ 1170
LF+DT+ NIA G+ DAT+ EI+ + +A+ H I L Q
Sbjct: 400 LFSDTVANNIALGR-PDATQQEIEHVARLASVHDDILRLPQ 439
|
Length = 569 |
| >gnl|CDD|223488 COG0411, LivG, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 100 bits (252), Expect = 2e-23
Identities = 59/225 (26%), Positives = 106/225 (47%), Gaps = 20/225 (8%)
Query: 404 GFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDG---INLKEFQLQWIRK 460
S+ + G L+G +G+GK+T+ +LI FY P +G V+ G L ++ R
Sbjct: 22 DVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHRI--ARL 79
Query: 461 KIGLVSQEPVLFTG-SIKDNIAYGKDDATT--------EEIRVATELANAAKFI-DKLPQ 510
I Q LF G ++ +N+A G + E A+ + + +
Sbjct: 80 GIARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFV-- 137
Query: 511 GIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRI-- 568
G+ L LS GQ++R+ IARA+ P++LLLDE + L+ E + + E + +
Sbjct: 138 GLGELADRPAGNLSYGQQRRLEIARALATQPKLLLLDEPAAGLNPEETEELAELIRELRD 197
Query: 569 MVNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVEDPE 612
T +++ H + V AD I V++ G+++ +GT ++ +P
Sbjct: 198 RGGVTILLIEHDMKLVMGLADRIVVLNYGEVIAEGTPEEVRNNPR 242
|
Length = 250 |
| >gnl|CDD|184588 PRK14243, PRK14243, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 101 bits (252), Expect = 2e-23
Identities = 79/222 (35%), Positives = 109/222 (49%), Gaps = 30/222 (13%)
Query: 406 SISISSGTTAALVGQSGSGKSTVISLIERFYD--PQA---GEVLIDGINL--KEFQLQWI 458
+ I A +G SG GKST++ R D P G+V G NL + +
Sbjct: 30 WLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDPVEV 89
Query: 459 RKKIGLVSQEPVLFTGSIKDNIAYG------KDDATTEEIRVATELANAA---KFIDKLP 509
R++IG+V Q+P F SI DNIAYG K D +E+ V L AA + DKL
Sbjct: 90 RRRIGMVFQKPNPFPKSIYDNIAYGARINGYKGD--MDEL-VERSLRQAALWDEVKDKLK 146
Query: 510 QGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIM 569
Q G LSGGQ+QR+ IARAI P ++L+DE SALD S ++E + +
Sbjct: 147 QS--------GLSLSGGQQQRLCIARAIAVQPEVILMDEPCSALDPISTLRIEELMHELK 198
Query: 570 VNRTTVIVAHRLSTV-RNADMIAVIHRGKIVEKGT-HSKLVE 609
T +IV H + R +DM A + ++ E G + LVE
Sbjct: 199 EQYTIIIVTHNMQQAARVSDMTAFFN-VELTEGGGRYGYLVE 239
|
Length = 264 |
| >gnl|CDD|213186 cd03219, ABC_Mj1267_LivG_branched, ATP-binding cassette component of branched chain amino acids transport system | Back alignment and domain information |
|---|
Score = 99.8 bits (250), Expect = 2e-23
Identities = 67/227 (29%), Positives = 109/227 (48%), Gaps = 25/227 (11%)
Query: 403 SGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDG---INLKEFQLQWIR 459
S S+ G L+G +G+GK+T+ +LI F P +G VL DG L ++ R
Sbjct: 17 DDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEI--AR 74
Query: 460 KKIGLVSQEPVLFTG-SIKDNIAYG---------KDDATTEEIRVATELANAA-KFIDKL 508
IG Q P LF ++ +N+ E R A E A + + L
Sbjct: 75 LGIGRTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERV-GL 133
Query: 509 PQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSAL-DAESEKVVQEALDR 567
D GE LS GQ++R+ IARA+ DP++LLLDE + L E+E++ E +
Sbjct: 134 ADLADRPAGE----LSYGQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELA-ELIRE 188
Query: 568 IMV-NRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVEDPE 612
+ T ++V H + V + AD + V+ +G+++ +GT ++ +P
Sbjct: 189 LRERGITVLLVEHDMDVVMSLADRVTVLDQGRVIAEGTPDEVRNNPR 235
|
The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). Length = 236 |
| >gnl|CDD|183133 PRK11432, fbpC, ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 102 bits (256), Expect = 3e-23
Identities = 68/216 (31%), Positives = 117/216 (54%), Gaps = 23/216 (10%)
Query: 406 SISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLV 465
+++I GT L+G SG GK+TV+ L+ P G++ IDG ++ +Q ++ I +V
Sbjct: 26 NLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSIQ--QRDICMV 83
Query: 466 SQEPVLFTG-SIKDNIAYG------KDDATTEEIRVATELANAAKFIDKLPQGIDTLVGE 518
Q LF S+ +N+ YG + + ++ A EL + A F D+ +D
Sbjct: 84 FQSYALFPHMSLGENVGYGLKMLGVPKEERKQRVKEALELVDLAGFEDRY---VD----- 135
Query: 519 HGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIM--VNRTTVI 576
Q+SGGQ+QR+A+ARA++ P++LL DE S LDA + ++E + + N T++
Sbjct: 136 ---QISGGQQQRVALARALILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLY 192
Query: 577 VAHRLS-TVRNADMIAVIHRGKIVEKGTHSKLVEDP 611
V H S +D + V+++GKI++ G+ +L P
Sbjct: 193 VTHDQSEAFAVSDTVIVMNKGKIMQIGSPQELYRQP 228
|
Length = 351 |
| >gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 105 bits (263), Expect = 3e-23
Identities = 79/245 (32%), Positives = 117/245 (47%), Gaps = 40/245 (16%)
Query: 400 QIFSGFSISISSGTTAALVGQSGSGKS-TVISLIERFYDPQA----GEVLIDGINL---K 451
+ G S I +G T ALVG+SGSGKS T +S++ P A G +L DG +L
Sbjct: 24 EAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAAS 83
Query: 452 EFQLQWIR-KKIGLVSQEPV-----LFTGSIKDNIA------YGKDD----ATTEEIRVA 495
E QL+ +R KIG++ QEP+ L T I +A G A E+
Sbjct: 84 ERQLRGVRGNKIGMIFQEPMTSLNPLHT--IGKQLAEVLRLHRGLSRAAARARALELLEL 141
Query: 496 TELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDA 555
+ K +D P +LSGGQ+QR+ IA A+ +P +L+ DE T+ALD
Sbjct: 142 VGIPEPEKRLDAYPH-----------ELSGGQRQRVMIAMALANEPDLLIADEPTTALDV 190
Query: 556 ESEKVVQEALDRIM--VNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVEDPE 612
+ + + L + + + + H L VR AD + V+ G+IVE GT L P+
Sbjct: 191 TVQAQILDLLKELQAELGMAILFITHDLGIVRKFADRVYVMQHGEIVETGTTETLFAAPQ 250
Query: 613 GAYSQ 617
Y++
Sbjct: 251 HPYTR 255
|
Length = 534 |
| >gnl|CDD|172744 PRK14256, PRK14256, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 99.7 bits (248), Expect = 4e-23
Identities = 71/222 (31%), Positives = 113/222 (50%), Gaps = 21/222 (9%)
Query: 406 SISISSGTTAALVGQSGSGKSTVISLIERFYD--PQA---GEVLIDGINL--KEFQLQWI 458
S+ + A++G SG GKSTV+ I R +D P A G++L+D ++ + I
Sbjct: 24 SMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVDPVSI 83
Query: 459 RKKIGLVSQEPVLFTG-SIKDNIAYGK------DDATTEEIRVATELANAAKFIDKLPQG 511
R+++G+V Q+P F SI DN+ G + + +EI V + L A L
Sbjct: 84 RRRVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNRSEADEI-VESSLKRVA-----LWDE 137
Query: 512 IDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVN 571
+ + + +LSGGQ+QR+ IAR I P ++L+DE SALD S ++E ++ +
Sbjct: 138 VKDRLKSNAMELSGGQQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKEK 197
Query: 572 RTTVIVAHRL-STVRNADMIAVIHRGKIVEKGTHSKLVEDPE 612
T +IV H + R +D A + G +VE G K+ PE
Sbjct: 198 YTIIIVTHNMQQAARVSDYTAFFYMGDLVECGETKKIFTTPE 239
|
Length = 252 |
| >gnl|CDD|213257 cd03290, ABCC_SUR1_N, ATP-binding cassette domain of the sulfonylurea receptor, subfamily C | Back alignment and domain information |
|---|
Score = 98.6 bits (245), Expect = 4e-23
Identities = 67/220 (30%), Positives = 113/220 (51%), Gaps = 10/220 (4%)
Query: 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 443
+++ + YFS+ S +I I +G +VGQ G GKS+++ I G+V
Sbjct: 1 VQVTNGYFSWG--SGLATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKV 58
Query: 444 LIDGINLKEFQLQWIRKK----IGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELA 499
N E + R + + +Q+P L ++++NI +G + + T+
Sbjct: 59 HWSNKNESEPSFEATRSRNRYSVAYAAQKPWLLNATVEENITFGSP-FNKQRYKAVTDAC 117
Query: 500 NAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAE-SE 558
+ ID LP G T +GE G LSGGQ+QRI +ARA+ ++ I+ LD+ SALD S+
Sbjct: 118 SLQPDIDLLPFGDQTEIGERGINLSGGQRQRICVARALYQNTNIVFLDDPFSALDIHLSD 177
Query: 559 KVVQEALDRIMVN--RTTVIVAHRLSTVRNADMIAVIHRG 596
++QE + + + + RT V+V H+L + +AD I + G
Sbjct: 178 HLMQEGILKFLQDDKRTLVLVTHKLQYLPHADWIIAMKDG 217
|
The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 218 |
| >gnl|CDD|226635 COG4161, ArtP, ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 98.8 bits (246), Expect = 6e-23
Identities = 66/239 (27%), Positives = 115/239 (48%), Gaps = 32/239 (13%)
Query: 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 443
I+L + Y A Q ++ G T L+G SG+GKS+++ ++ P++G +
Sbjct: 3 IQLNGINCFYGA---HQALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTL 59
Query: 444 LIDGINLK------EFQLQWIRKKIGLVSQEPVLFTG-SIKDNI--------AYGKDDAT 488
I G + + ++ +R+ +G+V Q+ L+ ++++N+ KD A
Sbjct: 60 NIAGNHFDFSKTPSDKAIRDLRRNVGMVFQQYNLWPHLTVQENLIEAPCRVLGLSKDQAL 119
Query: 489 TEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDE 548
++ L + D+ P LSGGQ+QR+AIARA++ +P++LL DE
Sbjct: 120 ARAEKLLKRL-RLKPYADRYP-----------LHLSGGQQQRVAIARALMMEPQVLLFDE 167
Query: 549 ATSALDAE-SEKVVQEALDRIMVNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHS 605
T+ALD E + ++V + T VIV H + R A + + G IVE+G S
Sbjct: 168 PTAALDPEITAQIVSIIKELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDAS 226
|
Length = 242 |
| >gnl|CDD|213183 cd03216, ABC_Carb_Monos_I, First domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 96.0 bits (240), Expect = 7e-23
Identities = 62/219 (28%), Positives = 102/219 (46%), Gaps = 61/219 (27%)
Query: 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 443
+ELR + + + G S+S+ G AL+G++G+GKST++ ++ Y P +GE+
Sbjct: 1 LELRGITKRFGG---VKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEI 57
Query: 444 LIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAK 503
L+DG + V F S +D A A
Sbjct: 58 LVDG--------------------KEVSFA-SPRD--------------------ARRA- 75
Query: 504 FIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSAL-DAESEKVVQ 562
GI + QLS G++Q + IARA+ ++ R+L+LDE T+AL AE E++
Sbjct: 76 -------GIAMV-----YQLSVGERQMVEIARALARNARLLILDEPTAALTPAEVERLF- 122
Query: 563 EALDRIMVNRTTVI-VAHRLSTVRN-ADMIAVIHRGKIV 599
+ + R+ VI ++HRL V AD + V+ G++V
Sbjct: 123 KVIRRLRAQGVAVIFISHRLDEVFEIADRVTVLRDGRVV 161
|
This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 163 |
| >gnl|CDD|172762 PRK14274, PRK14274, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 98.8 bits (246), Expect = 8e-23
Identities = 70/215 (32%), Positives = 110/215 (51%), Gaps = 8/215 (3%)
Query: 406 SISISSGTTAALVGQSGSGKSTVISLIERFYD--PQ---AGEVLIDGINL--KEFQLQWI 458
++SI A++G SG GKST I + P GE+ +G N+ + L +
Sbjct: 32 NLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVDLVEL 91
Query: 459 RKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGE 518
RK IG+V Q+ F SI DN+AYG T+ + E+ + L + +
Sbjct: 92 RKNIGMVFQKGNPFPQSIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEVKDRLHT 151
Query: 519 HGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVA 578
LSGGQ+QR+ IARA+ +P +LL+DE TSALD S + ++E + ++ T VIV
Sbjct: 152 QALSLSGGQQQRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKEKYTIVIVT 211
Query: 579 HRL-STVRNADMIAVIHRGKIVEKGTHSKLVEDPE 612
H + R +D A + G++VE +K+ +P+
Sbjct: 212 HNMQQAARVSDQTAFFYMGELVECNDTNKMFSNPD 246
|
Length = 259 |
| >gnl|CDD|234152 TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 101 bits (253), Expect = 9e-23
Identities = 72/220 (32%), Positives = 107/220 (48%), Gaps = 19/220 (8%)
Query: 400 QIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIR 459
S+S+ G L+G SG GK+T++ +I AG + G ++ Q +
Sbjct: 18 TALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQ--K 75
Query: 460 KKIGLVSQEPVLFTG-SIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGE 518
+ G+V Q LF ++ DNIAYG + VA +A + G+ +
Sbjct: 76 RDYGIVFQSYALFPNLTVADNIAYGLKNRGMGRAEVAERVAELLDLV-----GLPGSERK 130
Query: 519 HGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDA-ESEKVVQE--ALDRIMVNRTTV 575
+ QLSGGQ+QR+A+ARA+ P +LLLDE SALDA E + E L R + TT+
Sbjct: 131 YPGQLSGGQQQRVALARALATSPGLLLLDEPLSALDARVREHLRTEIRQLQR-RLGVTTI 189
Query: 576 IVAH----RLSTVRNADMIAVIHRGKIVEKGTHSKLVEDP 611
+V H LS AD I V++ G I + GT ++ P
Sbjct: 190 MVTHDQEEALSM---ADRIVVMNHGVIEQVGTPQEIYRHP 226
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely [Transport and binding proteins, Amino acids, peptides and amines]. Length = 353 |
| >gnl|CDD|172756 PRK14268, PRK14268, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 98.9 bits (246), Expect = 9e-23
Identities = 71/225 (31%), Positives = 112/225 (49%), Gaps = 15/225 (6%)
Query: 399 EQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYD-----PQAGEVLIDGINLKEF 453
+Q S+ I + AL+G SG GKST I + R D G+V I+G ++ E
Sbjct: 25 KQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEP 84
Query: 454 QLQWI--RKKIGLVSQEPVLFTGSIKDNIAYGK--DDATTEEIRVATELA-NAAKFIDKL 508
+ + RK +G+V Q+P F SI DN+AYG A +++ E A +A D+
Sbjct: 85 DVDVVELRKNVGMVFQKPNPFPMSIYDNVAYGPRIHGANKKDLDGVVENALRSAALWDET 144
Query: 509 PQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRI 568
+ + LSGGQ+QR+ IAR + P+I+L DE TSALD S +++ + +
Sbjct: 145 SDRLKS----PALSLSGGQQQRLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNL 200
Query: 569 MVNRTTVIVAHRL-STVRNADMIAVIHRGKIVEKGTHSKLVEDPE 612
+ T VIV H + R +D G+++E G ++ +P
Sbjct: 201 KKDYTIVIVTHNMQQAARISDYTGFFLMGELIEFGQTRQIFHNPR 245
|
Length = 258 |
| >gnl|CDD|213227 cd03260, ABC_PstB_phosphate_transporter, ATP-binding cassette domain of the phosphate transport system | Back alignment and domain information |
|---|
Score = 97.3 bits (243), Expect = 1e-22
Identities = 45/130 (34%), Positives = 68/130 (52%), Gaps = 16/130 (12%)
Query: 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYD-----P 1097
IEL ++ Y D +D++L I G+ AL+G SG GKST++ LL R D P
Sbjct: 1 IELRDLNVYYG---DKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAP 57
Query: 1098 DAGHITLDGVEIQKLQLK--WLRQQMGLVSQEPVLFNDTIRANIAYG------KGGDATE 1149
D G + LDG +I L + LR+++G+V Q+P F +I N+AYG K + +
Sbjct: 58 DEGEVLLDGKDIYDLDVDVLELRRRVGMVFQKPNPFPGSIYDNVAYGLRLHGIKLKEELD 117
Query: 1150 AEIQAASEMA 1159
++ A A
Sbjct: 118 ERVEEALRKA 127
|
Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). Length = 227 |
| >gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 103 bits (258), Expect = 1e-22
Identities = 77/261 (29%), Positives = 131/261 (50%), Gaps = 28/261 (10%)
Query: 378 DDIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYD 437
+D+R ++ + + G S+++ G T LVG+SGSGKST+ + R
Sbjct: 280 EDLRVWFPIKGGFLRRTVDHLRAV-DGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIP 338
Query: 438 PQAGEVLIDG---INLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRV 494
Q GE+ DG L +++ +R+++ +V Q+P GS+ + G+ E +RV
Sbjct: 339 SQ-GEIRFDGQDIDGLSRKEMRPLRRRMQVVFQDPY---GSLSPRMTVGQ--IIEEGLRV 392
Query: 495 ATELANAAKFIDKLPQGIDTLVGEHG----------TQLSGGQKQRIAIARAILKDPRIL 544
+AA ++ + I+ L E G + SGGQ+QRIAIARA++ P ++
Sbjct: 393 HEPKLSAA---ERDQRVIEALE-EVGLDPATRNRYPHEFSGGQRQRIAIARALILKPELI 448
Query: 545 LLDEATSALDAESEKVVQEALDRIMVNR--TTVIVAHRLSTVRN-ADMIAVIHRGKIVEK 601
LLDE TSALD + V + L + + + ++H L+ VR + V+ GKIVE+
Sbjct: 449 LLDEPTSALDRSVQAQVLDLLRDLQQKHGLSYLFISHDLAVVRALCHRVIVMRDGKIVEQ 508
Query: 602 GTHSKLVEDPEGAYSQ-LIRL 621
G + +P+ Y++ L+
Sbjct: 509 GPTEAVFANPQHEYTRALLAA 529
|
Length = 534 |
| >gnl|CDD|237647 PRK14248, PRK14248, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 98.9 bits (246), Expect = 1e-22
Identities = 77/269 (28%), Positives = 127/269 (47%), Gaps = 29/269 (10%)
Query: 357 MFETINRKPEIDAYDTKGKILDDIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAA 416
+ + + K EI + + + +E++D+ Y ++ + S+ I A
Sbjct: 1 VVQMVREKIEIAPFPEAKEHI------LEVKDLSIYYG---EKRAVNDISMDIEKHAVTA 51
Query: 417 LVGQSGSGKSTVISLIERFYD--PQA---GEVLIDGINLKEFQLQWI--RKKIGLVSQEP 469
L+G SG GKST + I R D P A GE+L +G+N+ + + + R++IG+V Q+P
Sbjct: 52 LIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNINVVNLRREIGMVFQKP 111
Query: 470 VLFTGSIKDNIAYG------KDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQL 523
F SI +NI + + + +EI V L AA L + + L
Sbjct: 112 NPFPKSIYNNITHALKYAGERRKSVLDEI-VEESLTKAA-----LWDEVKDRLHSSALSL 165
Query: 524 SGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRL-S 582
SGGQ+QR+ IAR + P +LLLDE SALD S ++E + + + +IV H +
Sbjct: 166 SGGQQQRLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKEEYSIIIVTHNMQQ 225
Query: 583 TVRNADMIAVIHRGKIVEKGTHSKLVEDP 611
+R +D A G +VE ++ P
Sbjct: 226 ALRVSDRTAFFLNGDLVEYDQTEQIFTSP 254
|
Length = 268 |
| >gnl|CDD|182592 PRK10619, PRK10619, histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 98.5 bits (245), Expect = 1e-22
Identities = 77/247 (31%), Positives = 132/247 (53%), Gaps = 38/247 (15%)
Query: 400 QIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGIN---------- 449
++ G S+ ++G +++G SGSGKST + I P G ++++G
Sbjct: 19 EVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQ 78
Query: 450 LKEF---QLQWIRKKIGLVSQEPVLFTG-SIKDNIAYGKDDATTEEIRVATELAN--AAK 503
LK QL+ +R ++ +V Q L++ ++ +N+ +A + + ++ + A A K
Sbjct: 79 LKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVM----EAPIQVLGLSKQEARERAVK 134
Query: 504 FIDKLPQGIDTLV-GEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQ 562
++ K+ GID G++ LSGGQ+QR++IARA+ +P +LL DE TSALD E +V
Sbjct: 135 YLAKV--GIDERAQGKYPVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPE---LVG 189
Query: 563 EALDRIMVN-----RTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVEDPEGAYS 616
E L RIM +T V+V H + R+ + + +H+GKI E+G +L +P+
Sbjct: 190 EVL-RIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGAPEQLFGNPQSP-- 246
Query: 617 QLIRLQE 623
RLQ+
Sbjct: 247 ---RLQQ 250
|
Length = 257 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 103 bits (258), Expect = 1e-22
Identities = 72/303 (23%), Positives = 127/303 (41%), Gaps = 58/303 (19%)
Query: 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGE 442
I L ++ +Y RP + S++++ G LVG++G+GKST++ ++ +P +GE
Sbjct: 3 MITLENLSLAYGDRP---LLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGE 59
Query: 443 VLIDGINLKEFQLQWIRKKIGLVSQEPVLFTG-SIKDNIAYG-------KDDATTEEIRV 494
V ++G +SQEP L ++ D + G + +
Sbjct: 60 VTRPK-----------GLRVGYLSQEPPLDPEKTVLDYVIEGFGELRELLAELEEAYALL 108
Query: 495 ATELANAAKFIDKLPQGIDTLVGEHG-----------------TQLSGGQKQRIAIARAI 537
A ++ L + +D E + LSGG ++R+A+ARA+
Sbjct: 109 ADPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDEDRPVSSLSGGWRRRVALARAL 168
Query: 538 LKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAH-R--LSTVRNADMIAVIH 594
L++P +LLLDE T+ LD ES + +++ L R T ++V+H R L V A I +
Sbjct: 169 LEEPDLLLLDEPTNHLDLESIEWLEDYLKRY--PGTVIVVSHDRYFLDNV--ATHILELD 224
Query: 595 RGKIVEKGTHSKLVEDPEGAYSQLIRLQEANKESEQTIDGQRKSEISMESLRHSSHRMSL 654
RGK+ G YS + + E +++ E+ + R
Sbjct: 225 RGKLTPYK----------GNYSSYLEQKAERLRQEAAAYEKQQKEL--AKEQEWIRRGKA 272
Query: 655 RRS 657
S
Sbjct: 273 AAS 275
|
Length = 530 |
| >gnl|CDD|184196 PRK13636, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 98.8 bits (246), Expect = 2e-22
Identities = 67/247 (27%), Positives = 126/247 (51%), Gaps = 18/247 (7%)
Query: 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 443
+++ ++ ++Y G +I+I G A++G +G+GKST+ + P +G +
Sbjct: 6 LKVEELNYNYS--DGTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRI 63
Query: 444 LIDG--INLKEFQLQWIRKKIGLVSQEP--VLFTGSIKDNIAYGKDDATTEEIRVATELA 499
L DG I+ L +R+ +G+V Q+P LF+ S+ ++++G + E V +
Sbjct: 64 LFDGKPIDYSRKGLMKLRESVGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKRVD 123
Query: 500 NAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALD----A 555
NA K GI+ L + LS GQK+R+AIA ++ +P++L+LDE T+ LD +
Sbjct: 124 NALK-----RTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVS 178
Query: 556 ESEKVVQEALDRIMVNRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKGTHSKLVEDPEGA 614
E K++ E + + T +I H + V D + V+ G+++ +G ++ + E
Sbjct: 179 EIMKLLVEMQKELGL--TIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFAEKEML 236
Query: 615 YSQLIRL 621
+RL
Sbjct: 237 RKVNLRL 243
|
Length = 283 |
| >gnl|CDD|213230 cd03263, ABC_subfamily_A, ATP-binding cassette domain of the lipid transporters, subfamily A | Back alignment and domain information |
|---|
Score = 97.2 bits (243), Expect = 2e-22
Identities = 48/233 (20%), Positives = 105/233 (45%), Gaps = 23/233 (9%)
Query: 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 443
+++R++ +Y S+++ G L+G +G+GK+T + ++ P +G
Sbjct: 1 LQIRNLTKTYKKGTK-PAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTA 59
Query: 444 LIDGINLKEFQLQWIRKKIGLVSQEPVLFTG-SIKDNIAY-----GKDDATTEEIRVATE 497
I+G +++ + R+ +G Q LF ++++++ + G + +
Sbjct: 60 YINGYSIRT-DRKAARQSLGYCPQFDALFDELTVREHLRFYARLKG--------LPKSEI 110
Query: 498 LANAAKFIDK--LPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDA 555
+ L + LSGG K+++++A A++ P +LLLDE TS LD
Sbjct: 111 KEEVELLLRVLGLTDKANKRAR----TLSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDP 166
Query: 556 ESEKVVQEALDRIMVNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKL 607
S + + + + + R+ ++ H + D IA++ GK+ G+ +L
Sbjct: 167 ASRRAIWDLILEVRKGRSIILTTHSMDEAEALCDRIAIMSDGKLRCIGSPQEL 219
|
The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. Length = 220 |
| >gnl|CDD|184593 PRK14258, PRK14258, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 98.2 bits (244), Expect = 2e-22
Identities = 74/245 (30%), Positives = 120/245 (48%), Gaps = 22/245 (8%)
Query: 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 443
I++ ++ F Y ++I G S+ I A++G SG GKST + + R + + EV
Sbjct: 8 IKVNNLSFYYDT---QKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELE-SEV 63
Query: 444 LIDG--------INLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYG-KDDATTEEIRV 494
++G I + L +R+++ +V +P LF S+ DN+AYG K ++ +
Sbjct: 64 RVEGRVEFFNQNIYERRVNLNRLRRQVSMVHPKPNLFPMSVYDNVAYGVKIVGWRPKLEI 123
Query: 495 ATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALD 554
+ +A K D L I + + LSGGQ+QR+ IARA+ P++LL+DE LD
Sbjct: 124 DDIVESALKDAD-LWDEIKHKIHKSALDLSGGQQQRLCIARALAVKPKVLLMDEPCFGLD 182
Query: 555 AESEKVVQEALD--RIMVNRTTVIVAHRLSTV-RNADMIAVIHR-----GKIVEKGTHSK 606
+ V+ + R+ T VIV+H L V R +D A G++VE G K
Sbjct: 183 PIASMKVESLIQSLRLRSELTMVIVSHNLHQVSRLSDFTAFFKGNENRIGQLVEFGLTKK 242
Query: 607 LVEDP 611
+ P
Sbjct: 243 IFNSP 247
|
Length = 261 |
| >gnl|CDD|213233 cd03266, ABC_NatA_sodium_exporter, ATP-binding cassette domain of the Na+ transporter | Back alignment and domain information |
|---|
Score = 96.7 bits (241), Expect = 2e-22
Identities = 58/229 (25%), Positives = 112/229 (48%), Gaps = 22/229 (9%)
Query: 384 IELRDVYFSY-PARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGE 442
I + + + Q G S ++ G L+G +G+GK+T + ++ +P AG
Sbjct: 2 ITADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGF 61
Query: 443 VLIDGINLKEFQLQWIRKKIGLVSQEPVLFTG-SIKDNIAY-----G-KDDATTEEIRVA 495
+DG ++ + + R+++G VS L+ + ++N+ Y G K D T +
Sbjct: 62 ATVDGFDVVKEPAE-ARRRLGFVSDSTGLYDRLTARENLEYFAGLYGLKGDELTARLEEL 120
Query: 496 TELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDA 555
+ + +D+ G S G +Q++AIARA++ DP +LLLDE T+ LD
Sbjct: 121 ADRLGMEELLDRRVGG-----------FSTGMRQKVAIARALVHDPPVLLLDEPTTGLDV 169
Query: 556 ESEKVVQEALDRIMVNRTTVIVA-HRLSTV-RNADMIAVIHRGKIVEKG 602
+ + ++E + ++ ++ + H + V R D + V+HRG++V +G
Sbjct: 170 MATRALREFIRQLRALGKCILFSTHIMQEVERLCDRVVVLHRGRVVYEG 218
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein. Length = 218 |
| >gnl|CDD|182980 PRK11124, artP, arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 97.4 bits (243), Expect = 2e-22
Identities = 67/242 (27%), Positives = 114/242 (47%), Gaps = 38/242 (15%)
Query: 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 443
I+L + Y A Q ++ G T L+G SG+GKS+++ ++ P++G +
Sbjct: 3 IQLNGINCFYGA---HQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTL 59
Query: 444 LIDGINL------KEFQLQWIRKKIGLVSQE----PVLFTGSIKDNI--------AYGKD 485
I G + + ++ +R+ +G+V Q+ P L +++ N+ KD
Sbjct: 60 NIAGNHFDFSKTPSDKAIRELRRNVGMVFQQYNLWPHL---TVQQNLIEAPCRVLGLSKD 116
Query: 486 DATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILL 545
A ++ L + D+ P LSGGQ+QR+AIARA++ +P++LL
Sbjct: 117 QALARAEKLLERL-RLKPYADRFPL-----------HLSGGQQQRVAIARALMMEPQVLL 164
Query: 546 LDEATSALDAE-SEKVVQEALDRIMVNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGT 603
DE T+ALD E + ++V + T VIV H + R A + + G IVE+G
Sbjct: 165 FDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGD 224
Query: 604 HS 605
S
Sbjct: 225 AS 226
|
Length = 242 |
| >gnl|CDD|213192 cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 96.0 bits (240), Expect = 3e-22
Identities = 40/101 (39%), Positives = 61/101 (60%), Gaps = 3/101 (2%)
Query: 1044 ELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHIT 1103
EL ++SF YP D++L I+ G+ V +VG +GSGKST++ LL P +G +
Sbjct: 1 ELKNLSFSYPDG-ARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVL 59
Query: 1104 LDGVEIQKLQLKWLRQQMGLVSQEP--VLFNDTIRANIAYG 1142
+DG ++ KL LK LR+++GLV Q P F T+ +A+G
Sbjct: 60 VDGKDLTKLSLKELRRKVGLVFQNPDDQFFGPTVEEEVAFG 100
|
Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 211 |
| >gnl|CDD|213191 cd03224, ABC_TM1139_LivF_branched, ATP-binding cassette domain of branched-chain amino acid transporter | Back alignment and domain information |
|---|
Score = 96.3 bits (241), Expect = 3e-22
Identities = 64/223 (28%), Positives = 112/223 (50%), Gaps = 26/223 (11%)
Query: 400 QIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDG---INLKEFQLQ 456
QI G S+++ G AL+G++G+GK+T++ I P++G + DG L +
Sbjct: 14 QILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHER- 72
Query: 457 WIRKKIGLVSQEPVLFTG-SIKDNI---AYGKDDATTEEIRVATELANAAKFIDKLPQGI 512
R IG V + +F ++++N+ AY + A + L + +L +
Sbjct: 73 -ARAGIGYVPEGRRIFPELTVEENLLLGAYARRRA-----KRKARLERVYELFPRLKERR 126
Query: 513 DTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIM-VN 571
L G LSGG++Q +AIARA++ P++LLLDE + L + K+V+E + I +
Sbjct: 127 KQLAG----TLSGGEQQMLAIARALMSRPKLLLLDEPSEGL---APKIVEEIFEAIRELR 179
Query: 572 R---TTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVED 610
T ++V AD V+ RG++V +GT ++L+ D
Sbjct: 180 DEGVTILLVEQNARFALEIADRAYVLERGRVVLEGTAAELLAD 222
|
LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. Length = 222 |
| >gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Score = 103 bits (258), Expect = 4e-22
Identities = 61/210 (29%), Positives = 111/210 (52%), Gaps = 2/210 (0%)
Query: 401 IFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRK 460
+ S S+ G L+G++GSGKST++S + R + GE+ IDG++ LQ RK
Sbjct: 1234 VLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLSTE-GEIQIDGVSWNSVTLQTWRK 1292
Query: 461 KIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHG 520
G++ Q+ +F+G+ + N+ + + EEI E I++ P +D ++ + G
Sbjct: 1293 AFGVIPQKVFIFSGTFRKNLD-PYEQWSDEEIWKVAEEVGLKSVIEQFPDKLDFVLVDGG 1351
Query: 521 TQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHR 580
LS G KQ + +AR+IL +ILLLDE ++ LD + +++++ L + N T ++ HR
Sbjct: 1352 YVLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQIIRKTLKQSFSNCTVILSEHR 1411
Query: 581 LSTVRNADMIAVIHRGKIVEKGTHSKLVED 610
+ + VI + + + KL+ +
Sbjct: 1412 VEALLECQQFLVIEGSSVKQYDSIQKLLNE 1441
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se [Transport and binding proteins, Anions]. Length = 1490 |
| >gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 101 bits (253), Expect = 4e-22
Identities = 70/227 (30%), Positives = 122/227 (53%), Gaps = 23/227 (10%)
Query: 384 IELRDVYFSYPA-RPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGE 442
+E+R + +P N+ + S+S+ G AL+G++G+GKST++ ++ Y P +GE
Sbjct: 5 LEMRGITKRFPGVVANDDV----SLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGE 60
Query: 443 VLIDGINLKEFQL----QWIRKKIGLVSQEPVLF-TGSIKDNIAYGKDDATTEEIRVATE 497
+ +DG KE ++ IR IG+V Q +L T ++ +NI G + + I
Sbjct: 61 IRVDG---KEVRIKSPRDAIRLGIGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQA 117
Query: 498 LANAAKFIDK--LPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSAL-D 554
A + ++ LP D V + LS G++QR+ I +A+ + R+L+LDE T+ L
Sbjct: 118 RARIKELSERYGLPVDPDAKVAD----LSVGEQQRVEILKALYRGARLLILDEPTAVLTP 173
Query: 555 AESEKVVQEALDRIMVNRTTVI-VAHRLSTVRN-ADMIAVIHRGKIV 599
E++++ E L R+ T+I + H+L V AD + V+ RGK+V
Sbjct: 174 QEADELF-EILRRLAAEGKTIIFITHKLKEVMAIADRVTVLRRGKVV 219
|
Length = 501 |
| >gnl|CDD|182331 PRK10247, PRK10247, putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Score = 95.9 bits (239), Expect = 5e-22
Identities = 61/215 (28%), Positives = 113/215 (52%), Gaps = 17/215 (7%)
Query: 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 443
++L++V + I + S S+ +G + G SG GKST++ ++ P +G +
Sbjct: 8 LQLQNVGYLAGDAK---ILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTL 64
Query: 444 LIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAK 503
L +G ++ + + R+++ +Q P LF ++ DN+ + +IR + A
Sbjct: 65 LFEGEDISTLKPEIYRQQVSYCAQTPTLFGDTVYDNLIF------PWQIRNQQ--PDPAI 116
Query: 504 FIDKLPQ-GI-DTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVV 561
F+D L + + DT++ ++ +LSGG+KQRI++ R + P++LLLDE TSALD ++ V
Sbjct: 117 FLDDLERFALPDTILTKNIAELSGGEKQRISLIRNLQFMPKVLLLDEITSALDESNKHNV 176
Query: 562 QEALDRIMVNRTTVI--VAHRLSTVRNADMIAVIH 594
E + R + + + V H + +AD VI
Sbjct: 177 NEIIHRYVREQNIAVLWVTHDKDEINHAD--KVIT 209
|
Length = 225 |
| >gnl|CDD|172748 PRK14260, PRK14260, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 96.2 bits (239), Expect = 7e-22
Identities = 72/241 (29%), Positives = 116/241 (48%), Gaps = 16/241 (6%)
Query: 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQA--- 440
I+++D+ F Y + G S+ I A++G SG GKST I + R + +
Sbjct: 8 IKVKDLSFYYNT---SKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVK 64
Query: 441 --GEVLIDGINLKE--FQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVAT 496
G V G N+ + + +R++IG+V Q P F SI +N+AYG +
Sbjct: 65 VEGVVDFFGQNIYDPRININRLRRQIGMVFQRPNPFPMSIYENVAYGVRISAKLPQADLD 124
Query: 497 ELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAE 556
E+ +A L Q + + + LSGGQ+QR+ IARA+ P++LL+DE SALD
Sbjct: 125 EIVESALKGAALWQEVKDKLNKSALGLSGGQQQRLCIARALAIKPKVLLMDEPCSALDPI 184
Query: 557 SEKVVQEALDRIMVNRTTVIVAHRL-STVRNADMIAVIHR-----GKIVEKGTHSKLVED 610
+ V+E + + T IV H + R +D A G++VE G +++ +
Sbjct: 185 ATMKVEELIHSLRSELTIAIVTHNMQQATRVSDFTAFFSTDESRIGQMVEFGVTTQIFSN 244
Query: 611 P 611
P
Sbjct: 245 P 245
|
Length = 259 |
| >gnl|CDD|182778 PRK10851, PRK10851, sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 98.2 bits (245), Expect = 7e-22
Identities = 75/226 (33%), Positives = 119/226 (52%), Gaps = 21/226 (9%)
Query: 398 NEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQW 457
Q+ + S+ I SG AL+G SGSGK+T++ +I +G + G ++ +L
Sbjct: 14 RTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVS--RLHA 71
Query: 458 IRKKIGLVSQEPVLFTG-SIKDNIAYGKDDATTEEIRVAT--ELANAAKFIDKLPQGIDT 514
+K+G V Q LF ++ DNIA+G + V E NAA K+ Q ++
Sbjct: 72 RDRKVGFVFQHYALFRHMTVFDNIAFG--------LTVLPRRERPNAAAIKAKVTQLLEM 123
Query: 515 LVGEH-----GTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIM 569
+ H QLSGGQKQR+A+ARA+ +P+ILLLDE ALDA+ K ++ L ++
Sbjct: 124 VQLAHLADRYPAQLSGGQKQRVALARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLH 183
Query: 570 --VNRTTVIVAH-RLSTVRNADMIAVIHRGKIVEKGTHSKLVEDPE 612
+ T+V V H + + AD + V+ +G I + GT ++ +P
Sbjct: 184 EELKFTSVFVTHDQEEAMEVADRVVVMSQGNIEQAGTPDQVWREPA 229
|
Length = 353 |
| >gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding protein-dependent transport systems | Back alignment and domain information |
|---|
Score = 93.4 bits (233), Expect = 8e-22
Identities = 42/103 (40%), Positives = 65/103 (63%), Gaps = 6/103 (5%)
Query: 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHI 1102
+EL +VS +Y V D++L I AG+ VAL+G SGSGKST++ + +PD+G I
Sbjct: 1 LELKNVSKRYG---QKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSI 57
Query: 1103 TLDGVEIQKL--QLKWLRQQMGLVSQEPVLF-NDTIRANIAYG 1142
+DG ++ L +L LR+++G+V Q+ LF + T+ NIA G
Sbjct: 58 LIDGEDLTDLEDELPPLRRRIGMVFQDFALFPHLTVLENIALG 100
|
This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 178 |
| >gnl|CDD|183044 PRK11231, fecE, iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 95.9 bits (239), Expect = 9e-22
Identities = 60/213 (28%), Positives = 110/213 (51%), Gaps = 12/213 (5%)
Query: 398 NEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQW 457
++I + S+S+ +G AL+G +G GKST++ R PQ+G V + + +
Sbjct: 14 TKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQ 73
Query: 458 IRKKIGLVSQEPVLFTG-SIKDNIAYGKDDATTEEIRVATE---LANAAKFIDKLPQGID 513
+ +++ L+ Q + G ++++ +AYG+ + R++ E N A +++ I+
Sbjct: 74 LARRLALLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQA--MEQT--RIN 129
Query: 514 TLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVN-- 571
L T LSGGQ+QR +A + +D ++LLDE T+ LD + +V L R +
Sbjct: 130 HLADRRLTDLSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLDI-NHQVELMRLMRELNTQG 188
Query: 572 RTTVIVAHRLSTV-RNADMIAVIHRGKIVEKGT 603
+T V V H L+ R D + V+ G ++ +GT
Sbjct: 189 KTVVTVLHDLNQASRYCDHLVVLANGHVMAQGT 221
|
Length = 255 |
| >gnl|CDD|226970 COG4619, COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 94.9 bits (236), Expect = 1e-21
Identities = 63/221 (28%), Positives = 119/221 (53%), Gaps = 14/221 (6%)
Query: 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 443
+EL+ V + I + S+S+ +G A+ G SG GKST++ ++ P +G +
Sbjct: 4 LELKQVGYLAGDAK---ILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTL 60
Query: 444 LIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRV-ATELANAA 502
L +G ++ + + R+++ +Q P LF +++DN+ + +IR + A A
Sbjct: 61 LFEGEDVSTLKPEAYRQQVSYCAQTPALFGDTVEDNLIF------PWQIRNRRPDRAAAL 114
Query: 503 KFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQ 562
+ + D+++ ++ T+LSGG+KQRIA+ R + P+ILLLDE TSALD +++ ++
Sbjct: 115 DLLARFALP-DSILTKNITELSGGEKQRIALIRNLQFMPKILLLDEITSALDESNKRNIE 173
Query: 563 EALDRIMV--NRTTVIVAH-RLSTVRNADMIAVIHRGKIVE 600
E + R + N + + H + +R+AD + + G E
Sbjct: 174 EMIHRYVREQNVAVLWITHDKDQAIRHADKVITLQPGHAGE 214
|
Length = 223 |
| >gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily | Back alignment and domain information |
|---|
Score = 93.8 bits (234), Expect = 1e-21
Identities = 59/215 (27%), Positives = 99/215 (46%), Gaps = 43/215 (20%)
Query: 394 PARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLI--ERFYDPQAGEVLIDGINLK 451
P++ +Q+ S G A++G SG+GKST+++ + R +GEVLI+G L
Sbjct: 17 PSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLD 76
Query: 452 EFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQG 511
+ RK IG V Q+ +L + V L AAK +G
Sbjct: 77 ---KRSFRKIIGYVPQDDILH-----------------PTLTVRETLMFAAKL-----RG 111
Query: 512 IDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMV- 570
+ SGG+++R++IA ++ +P +L LDE TS LD+ S V L R +
Sbjct: 112 L-----------SGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLL-RRLAD 159
Query: 571 -NRTTVIVAHRLST--VRNADMIAVIHRGKIVEKG 602
RT + H+ S+ D + ++ +G+++ G
Sbjct: 160 TGRTIICSIHQPSSEIFELFDKLLLLSQGRVIYFG 194
|
ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. Length = 194 |
| >gnl|CDD|240327 PTZ00243, PTZ00243, ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 101 bits (252), Expect = 2e-21
Identities = 60/210 (28%), Positives = 108/210 (51%), Gaps = 21/210 (10%)
Query: 406 SISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLV 465
S+S+ G ++G +GSGKST++ + ++ G V W + I V
Sbjct: 680 SVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEISEGRV-------------WAERSIAYV 726
Query: 466 SQEPVLFTGSIKDNIAY-GKDDAT--TEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQ 522
Q+ + +++ NI + ++DA + +RV+ A+ A+ L G++T +GE G
Sbjct: 727 PQQAWIMNATVRGNILFFDEEDAARLADAVRVSQLEADLAQ----LGGGLETEIGEKGVN 782
Query: 523 LSGGQKQRIAIARAILKDPRILLLDEATSALDAE-SEKVVQEALDRIMVNRTTVIVAHRL 581
LSGGQK R+++ARA+ + + LLD+ SALDA E+VV+E + +T V+ H++
Sbjct: 783 LSGGQKARVSLARAVYANRDVYLLDDPLSALDAHVGERVVEECFLGALAGKTRVLATHQV 842
Query: 582 STVRNADMIAVIHRGKIVEKGTHSKLVEDP 611
V AD + + G++ G+ + +
Sbjct: 843 HVVPRADYVVALGDGRVEFSGSSADFMRTS 872
|
Length = 1560 |
| >gnl|CDD|184204 PRK13645, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 96.2 bits (239), Expect = 2e-21
Identities = 76/267 (28%), Positives = 132/267 (49%), Gaps = 26/267 (9%)
Query: 379 DIRGDIELRDVYFSYPAR-PNE-QIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFY 436
D DI L +V ++Y + P E + + S++ ++G +GSGKST+I L
Sbjct: 2 DFSKDIILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLI 61
Query: 437 DPQAGEVLIDG----INLKEF-QLQWIRKKIGLVSQEP--VLFTGSIKDNIAYGKDDATT 489
+ G+ ++ NLK+ +++ +RK+IGLV Q P LF +I+ +IA+G +
Sbjct: 62 ISETGQTIVGDYAIPANLKKIKEVKRLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNLGE 121
Query: 490 EEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEA 549
+ ++ K + +LP+ V +LSGGQK+R+A+A I D L+LDE
Sbjct: 122 NKQEAYKKVPELLKLV-QLPE---DYVKRSPFELSGGQKRRVALAGIIAMDGNTLVLDEP 177
Query: 550 TSALDAESEKVVQEALDRIMVN--RTTVIVAHRLSTV-RNADMIAVIHRGKIVEKGTH-- 604
T LD + E+ +R+ + ++V H + V R AD + V+H GK++ G+
Sbjct: 178 TGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMDQVLRIADEVIVMHEGKVISIGSPFE 237
Query: 605 --------SKLVEDPEGAYSQLIRLQE 623
+K+ DP Y + +L+
Sbjct: 238 IFSNQELLTKIEIDPPKLYQLMYKLKN 264
|
Length = 289 |
| >gnl|CDD|237456 PRK13641, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 96.1 bits (239), Expect = 2e-21
Identities = 70/242 (28%), Positives = 117/242 (48%), Gaps = 20/242 (8%)
Query: 384 IELRDVYFSY-PARPNEQI-FSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAG 441
I+ +V + Y P P E+ S + G+ ALVG +GSGKST++ P +G
Sbjct: 3 IKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSG 62
Query: 442 EVLIDG----INLKEFQLQWIRKKIGLVSQ--EPVLFTGSIKDNIAYGKDD--ATTEEIR 493
+ I G L+ +RKK+ LV Q E LF ++ ++ +G + + +E +
Sbjct: 63 TITIAGYHITPETGNKNLKKLRKKVSLVFQFPEAQLFENTVLKDVEFGPKNFGFSEDEAK 122
Query: 494 VATELANAAKFIDKLPQGIDTLVGEHGT-QLSGGQKQRIAIARAILKDPRILLLDEATSA 552
A K++ K+ G+ + +LSGGQ +R+AIA + +P IL LDE +
Sbjct: 123 EK-----ALKWLKKV--GLSEDLISKSPFELSGGQMRRVAIAGVMAYEPEILCLDEPAAG 175
Query: 553 LDAESEK-VVQEALDRIMVNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVED 610
LD E K ++Q D T ++V H + V AD + V+ GK+++ + ++ D
Sbjct: 176 LDPEGRKEMMQLFKDYQKAGHTVILVTHNMDDVAEYADDVLVLEHGKLIKHASPKEIFSD 235
Query: 611 PE 612
E
Sbjct: 236 KE 237
|
Length = 287 |
| >gnl|CDD|131816 TIGR02769, nickel_nikE, nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Score = 95.3 bits (237), Expect = 2e-21
Identities = 70/225 (31%), Positives = 111/225 (49%), Gaps = 30/225 (13%)
Query: 395 ARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEF- 453
A+ + + S+SI G T L+G+SG GKST+ L+ P G V G +L +
Sbjct: 20 AKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLD 79
Query: 454 --QLQWIRKKIGLVSQE---PVLFTGSIKDNIA-----YGKDDATTEEIRVATELANA-- 501
Q + R+ + LV Q+ V +++ I D + ++ R+A EL +
Sbjct: 80 RKQRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLDESEQKARIA-ELLDMVG 138
Query: 502 --AKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEK 559
++ DKLP+ QLSGGQ QRI IARA+ P++++LDEA S LD +
Sbjct: 139 LRSEDADKLPR-----------QLSGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQA 187
Query: 560 VVQEALDRIMVNRTT--VIVAHRLSTV-RNADMIAVIHRGKIVEK 601
V+ E L ++ T + + H L V +AV+ +G+IVE+
Sbjct: 188 VILELLRKLQQAFGTAYLFITHDLRLVQSFCQRVAVMDKGQIVEE 232
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase [Transport and binding proteins, Cations and iron carrying compounds]. Length = 265 |
| >gnl|CDD|237422 PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 94.5 bits (236), Expect = 3e-21
Identities = 67/231 (29%), Positives = 112/231 (48%), Gaps = 20/231 (8%)
Query: 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 443
+E R++ R + S+++ G A++G +G+GKST++ + P +GEV
Sbjct: 3 LEARNLSVRLGGR---TLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEV 59
Query: 444 LIDGINLKEFQLQWIRKKIGLVSQEPVL-FTGSIKDNIAYGKDDATTEEIRVATELANAA 502
++G L ++ + ++ ++ Q L F ++++ +A G+ +A A
Sbjct: 60 RLNGRPLADWSPAELARRRAVLPQHSSLSFPFTVEEVVAMGRAPHGLSRAEDDALVAAA- 118
Query: 503 KFIDKLPQ-GIDTLVGEHGTQLSGGQKQRIAIARAIL------KDPRILLLDEATSALD- 554
L Q + L G QLSGG++QR+ +AR + PR LLLDE TSALD
Sbjct: 119 -----LAQVDLAHLAGRDYPQLSGGEQQRVQLARVLAQLWEPDGPPRWLLLDEPTSALDL 173
Query: 555 AESEKVVQEALDRIMVNRTTVI-VAHRLS-TVRNADMIAVIHRGKIVEKGT 603
A V++ A VI V H L+ R AD I ++H+G++V GT
Sbjct: 174 AHQHHVLRLARQLAHERGLAVIVVLHDLNLAARYADRIVLLHQGRLVADGT 224
|
Length = 258 |
| >gnl|CDD|237650 PRK14265, PRK14265, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 93.5 bits (232), Expect = 7e-21
Identities = 85/280 (30%), Positives = 125/280 (44%), Gaps = 65/280 (23%)
Query: 382 GDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYD--PQ 439
G + L DV+ PA+ +I A +G SG GKST++ R D P
Sbjct: 32 GFLALVDVHLKIPAK---KII-------------AFIGPSGCGKSTLLRCFNRMNDLIPG 75
Query: 440 A---GEVLIDGINLKEFQLQWI--RKKIGLVSQEPVLFTGSIKDNIAYGK---------D 485
A G +L N+ + Q+ + R+++G+V Q P F SI +NIA+ D
Sbjct: 76 AKVEGRLLYRDRNIYDSQINSVKLRRQVGMVFQRPNPFPKSIYENIAFAPRANGYKGNLD 135
Query: 486 DATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILL 545
+ + +R A + K DKL E GT LSGGQ+QR+ IARAI P +LL
Sbjct: 136 ELVEDSLRRAA-IWEEVK--DKLK--------EKGTALSGGQQQRLCIARAIAMKPDVLL 184
Query: 546 LDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTV-RNADMIAVIH---------R 595
+DE SALD S + V+E + T ++V H + R AD A + R
Sbjct: 185 MDEPCSALDPISTRQVEELCLELKEQYTIIMVTHNMQQASRVADWTAFFNTEIDEYGKRR 244
Query: 596 GKIVEKGTHSKLVEDPEGAYSQLIRLQEANKESEQTIDGQ 635
GK+VE ++ P+ KE+ + I G+
Sbjct: 245 GKLVEFSPTEQMFGSPQ------------TKEAREYISGR 272
|
Length = 274 |
| >gnl|CDD|236689 PRK10419, nikE, nickel transporter ATP-binding protein NikE; Provisional | Back alignment and domain information |
|---|
Score = 93.2 bits (232), Expect = 8e-21
Identities = 67/229 (29%), Positives = 104/229 (45%), Gaps = 40/229 (17%)
Query: 395 ARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINL---- 450
++ + + S+S+ SG T AL+G+SG GKST+ L+ P G V G L
Sbjct: 21 KHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLN 80
Query: 451 ----KEFQ--LQWI----------RKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRV 494
K F+ +Q + RK + + +EP+ S+ + A E+
Sbjct: 81 RAQRKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHLLSLDK----AERLARASEMLR 136
Query: 495 ATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALD 554
A +L +DK P QLSGGQ QR+ +ARA+ +P++L+LDEA S LD
Sbjct: 137 AVDLD--DSVLDKRPP-----------QLSGGQLQRVCLARALAVEPKLLILDEAVSNLD 183
Query: 555 AESEKVVQEALDRIMVNRTT--VIVAHRLSTV-RNADMIAVIHRGKIVE 600
+ V L ++ T + + H L V R + V+ G+IVE
Sbjct: 184 LVLQAGVIRLLKKLQQQFGTACLFITHDLRLVERFCQRVMVMDNGQIVE 232
|
Length = 268 |
| >gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Score = 97.1 bits (242), Expect = 2e-20
Identities = 94/416 (22%), Positives = 166/416 (39%), Gaps = 48/416 (11%)
Query: 776 LLSPAQSYFFAVAGNKLIQRIRSMCFEKVIHMEVSWFDEPEHSSGAIGARLSADAASVRA 835
+LS Q + V G +L I + + + +S+F +G I +R + ++ + A
Sbjct: 211 ILSYIQIFLLNVLGQRLSIDIILSYIKHLFELPMSFFST--RRTGEIVSRFTDASSIIDA 268
Query: 836 LVGDALARIVQNISTAAAGLIIAFTASWQLALIILVMLPLIGVSGYTQMKFMKGFSADAK 895
L L+ + GL + L L+ L+ +P+ V + + DA
Sbjct: 269 LASTILSLFLDMWILVIVGLFLVRQNM-LLFLLSLLSIPVYAVIIILFKRTFNKLNHDAM 327
Query: 896 MKYEEASQVANDA----VGSIRTVASFCAEEKVMQL-------YKKKCEAPMKT-GIRQG 943
+A+ V N + + I T+ S +E + Y K K +Q
Sbjct: 328 ----QANAVLNSSIIEDLNGIETIKSLTSEAERYSKIDSEFGDYLNKSFKYQKADQGQQA 383
Query: 944 MVSGGGFGASFFLLFAFYAASFYAGARLVEDGKATFSDVFKV-----FFSLTMTAIGISQ 998
+ + + +L + GA LV GK T + +F + I Q
Sbjct: 384 IKAVTKLILNVVIL--------WTGAYLVMRGKLTLGQLITFNALLSYFLTPLENIINLQ 435
Query: 999 SSSFSSDSNKAKSAAASIFAIIDRESKIDPSDES----GTILEDVKGEIELHHVSFKYPS 1054
K AA + E + S+ T L ++ G+I ++ VS+ Y
Sbjct: 436 P----------KLQAARVANNRLNEVYLVDSEFINKKKRTELNNLNGDIVINDVSYSYGY 485
Query: 1055 RPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQL 1114
+ D++L I+ +VG SGSGKST+ LL F+ +G I L+G ++ +
Sbjct: 486 --GSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKDIDR 543
Query: 1115 KWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQ 1170
LRQ + + QEP +F+ +I N+ G + ++ EI AA E+A I ++
Sbjct: 544 HTLRQFINYLPQEPYIFSGSILENLLLGAKENVSQDEIWAACEIAEIKDDIENMPL 599
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair, Transport and binding proteins, Other]. Length = 708 |
| >gnl|CDD|172751 PRK14263, PRK14263, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 92.4 bits (229), Expect = 2e-20
Identities = 74/237 (31%), Positives = 108/237 (45%), Gaps = 50/237 (21%)
Query: 407 ISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQW--------- 457
+ I +G SG GKSTV+ + R D L+ G E + +
Sbjct: 29 VPIRKNEITGFIGPSGCGKSTVLRSLNRMND------LVKGFRF-EGHVHFLGQDVYGKG 81
Query: 458 -----IRKKIGLVSQEPVLFTGSIKDNIAYG------KDDATTEEIRVATELANAA---K 503
+R+ IG+V Q+P F+ SI DN+A+G K D RV L AA +
Sbjct: 82 VDPVVVRRYIGMVFQQPNPFSMSIFDNVAFGLRLNRYKGDLGD---RVKHALQGAALWDE 138
Query: 504 FIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQE 563
DKL G LSGGQ+QR+ IARAI +P +LLLDE SALD + + V+E
Sbjct: 139 VKDKLKVS--------GLSLSGGQQQRLCIARAIATEPEVLLLDEPCSALDPIATRRVEE 190
Query: 564 ALDRIMVNRTTVIVAHRL-STVRNADMIAVI--------HRGKIVEKGTHSKLVEDP 611
+ + + T +V H + +R AD A G +VE G +++ ++P
Sbjct: 191 LMVELKKDYTIALVTHNMQQAIRVADTTAFFSVDISQGTRTGYLVEMGPTAQIFQNP 247
|
Length = 261 |
| >gnl|CDD|131377 TIGR02324, CP_lyasePhnL, phosphonate C-P lyase system protein PhnL | Back alignment and domain information |
|---|
Score = 91.3 bits (227), Expect = 2e-20
Identities = 52/200 (26%), Positives = 85/200 (42%), Gaps = 41/200 (20%)
Query: 400 QIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVL-------IDGINLKE 452
+ S+++++G AL G SG+GKST++ + Y P +G +L +D
Sbjct: 22 PVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQASP 81
Query: 453 FQLQWIRKK-IGLVSQ---------------EPVLFTGSIKDNIAYGKDDATTEEIRVAT 496
++ +R+K IG VSQ EP+L G + A + + +
Sbjct: 82 REVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLERG-VPREAARARARELLARLNIPE 140
Query: 497 ELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAE 556
L + SGG++QR+ IAR + D ILLLDE T++LDA
Sbjct: 141 RLWHLPP-----------------ATFSGGEQQRVNIARGFIADYPILLLDEPTASLDAA 183
Query: 557 SEKVVQEALDRIMVNRTTVI 576
+ +VV E + +I
Sbjct: 184 NRQVVVELIAEAKARGAALI 203
|
Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. Length = 224 |
| >gnl|CDD|224026 COG1101, PhnK, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 92.4 bits (230), Expect = 2e-20
Identities = 62/218 (28%), Positives = 116/218 (53%), Gaps = 12/218 (5%)
Query: 393 YPARPNE-QIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLK 451
+ P E + +G S+ I+ G ++G +G+GKST+++ I P +G++LIDG+++
Sbjct: 12 FKGTPLEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVT 71
Query: 452 EFQLQWIR-KKIGLVSQEPVLFTG---SIKDNIAYGKDDATTEEIRVATELANAAKF--- 504
+ R + V Q+P+ T +I++N+A + + A + F
Sbjct: 72 KKS-VAKRANLLARVFQDPLAGTAPELTIEENLALAESRGKKRGLSSALNERRRSSFRER 130
Query: 505 IDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEA 564
+ +L G++ + + LSGGQ+Q +++ A L P+ILLLDE T+ALD ++ + V E
Sbjct: 131 LARLGLGLENRLSDRIGLLSGGQRQALSLLMATLHPPKILLLDEHTAALDPKTAEFVMEL 190
Query: 565 LDRIMVNR--TTVIVAHRL-STVRNADMIAVIHRGKIV 599
+I+ TT++V H + + + + ++H GKIV
Sbjct: 191 TAKIVEEHKLTTLMVTHNMEDALDYGNRLIMLHSGKIV 228
|
Length = 263 |
| >gnl|CDD|226963 COG4604, CeuD, ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 91.6 bits (228), Expect = 2e-20
Identities = 63/230 (27%), Positives = 120/230 (52%), Gaps = 22/230 (9%)
Query: 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 443
I + +V SY + + S+ I G +++G +G+GKST++S++ R +GE+
Sbjct: 2 ITIENVSKSYGTKV---VLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEI 58
Query: 444 LIDGINLKEFQLQWIRKKIGLVSQEPVLFTG-SIKDNIAYGK----DDATTEEIRVATEL 498
IDG+ L + + KK+ ++ QE + + +++D + +G+ T+E R +
Sbjct: 59 TIDGLELTSTPSKELAKKLSILKQENHINSRLTVRDLVGFGRFPYSQGRLTKEDR---RI 115
Query: 499 ANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALD---- 554
N A I+ L ++ L + +LSGGQ+QR IA + +D +LLDE + LD
Sbjct: 116 INEA--IEYL--HLEDLSDRYLDELSGGQRQRAFIAMVLAQDTDYVLLDEPLNNLDMKHS 171
Query: 555 AESEKVVQEALDRIMVNRTTVIVAHRLS-TVRNADMIAVIHRGKIVEKGT 603
+ K+++ D + +T V+V H ++ +D I + GK+V++G+
Sbjct: 172 VQIMKILRRLADEL--GKTIVVVLHDINFASCYSDHIVALKNGKVVKQGS 219
|
Length = 252 |
| >gnl|CDD|182733 PRK10790, PRK10790, putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Score = 96.3 bits (240), Expect = 3e-20
Identities = 48/118 (40%), Positives = 69/118 (58%), Gaps = 4/118 (3%)
Query: 1041 GEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAG 1100
G I++ +VSF Y R D V +++NL + + VALVG +GSGKST+ SLL +Y G
Sbjct: 339 GRIDIDNVSFAY--RDDNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEG 396
Query: 1101 HITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEM 1158
I LDG + L LRQ + +V Q+PV+ DT AN+ G+ D +E ++ A E
Sbjct: 397 EIRLDGRPLSSLSHSVLRQGVAMVQQDPVVLADTFLANVTLGR--DISEEQVWQALET 452
|
Length = 592 |
| >gnl|CDD|131266 TIGR02211, LolD_lipo_ex, lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Score = 89.7 bits (223), Expect = 5e-20
Identities = 61/213 (28%), Positives = 110/213 (51%), Gaps = 22/213 (10%)
Query: 400 QIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEF---QLQ 456
++ G S+SI G A+VG SGSGKST++ L+ +P +GEVL +G +L + +
Sbjct: 19 RVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERA 78
Query: 457 WIR-KKIGLVSQEPVLFTG-SIKDNIAY-----GKDDATTEEIRVATELANAAKFIDKLP 509
+R KK+G + Q L + +N+A K +E A + ++K+
Sbjct: 79 KLRNKKLGFIYQFHHLLPDFTALENVAMPLLIGKKSVKEAKER--------AYEMLEKV- 129
Query: 510 QGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIM 569
G++ + ++LSGG++QR+AIARA++ P ++L DE T LD + K++ + + +
Sbjct: 130 -GLEHRINHRPSELSGGERQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELN 188
Query: 570 VNRTT--VIVAHRLSTVRNADMIAVIHRGKIVE 600
T ++V H L + D + + G++
Sbjct: 189 RELNTSFLVVTHDLELAKKLDRVLEMKDGQLFN 221
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina [Protein fate, Protein and peptide secretion and trafficking]. Length = 221 |
| >gnl|CDD|182993 PRK11144, modC, molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 92.6 bits (231), Expect = 5e-20
Identities = 67/208 (32%), Positives = 108/208 (51%), Gaps = 34/208 (16%)
Query: 410 SSGTTAALVGQSGSGKSTVISLIERFYDPQAGE------VLID---GINLKEFQLQWIRK 460
+ G TA + G+SG+GK+++I+ I PQ G VL D GI L + +
Sbjct: 23 AQGITA-IFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEK-----R 76
Query: 461 KIGLVSQEPVLFTG-SIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQ--GIDTLVG 517
+IG V Q+ LF ++ N+ YG + A+F DK+ GI+ L+
Sbjct: 77 RIGYVFQDARLFPHYKVRGNLRYGMAKS------------MVAQF-DKIVALLGIEPLLD 123
Query: 518 EHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIM--VNRTTV 575
+ LSGG+KQR+AI RA+L P +LL+DE ++LD ++ + L+R+ +N +
Sbjct: 124 RYPGSLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKRELLPYLERLAREINIPIL 183
Query: 576 IVAHRLSTV-RNADMIAVIHRGKIVEKG 602
V+H L + R AD + V+ +GK+ G
Sbjct: 184 YVSHSLDEILRLADRVVVLEQGKVKAFG 211
|
Length = 352 |
| >gnl|CDD|213269 cd03369, ABCC_NFT1, ATP-binding cassette domain 2 of NFT1, subfamily C | Back alignment and domain information |
|---|
Score = 89.0 bits (221), Expect = 6e-20
Identities = 38/100 (38%), Positives = 70/100 (70%), Gaps = 3/100 (3%)
Query: 1041 GEIELHHVSFKYPSRPDV-QVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDA 1099
GEIE+ ++S +Y PD+ V ++++ K++AG+ + +VG +G+GKST++ L RF + +
Sbjct: 5 GEIEVENLSVRY--APDLPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEE 62
Query: 1100 GHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANI 1139
G I +DG++I + L+ LR + ++ Q+P LF+ TIR+N+
Sbjct: 63 GKIEIDGIDISTIPLEDLRSSLTIIPQDPTLFSGTIRSNL 102
|
Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (multidrug resistance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. Length = 207 |
| >gnl|CDD|215640 PLN03232, PLN03232, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 96.6 bits (240), Expect = 6e-20
Identities = 64/230 (27%), Positives = 119/230 (51%), Gaps = 14/230 (6%)
Query: 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 443
I +++ YFS+ ++ ++ S ++ I G+ A+VG +G GK+++IS
Sbjct: 615 ISIKNGYFSWDSKTSKPTLSDINLEIPVGSLVAIVGGTGEGKTSLIS------------A 662
Query: 444 LIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAK 503
++ ++ E IR + V Q +F ++++NI +G D + R A ++
Sbjct: 663 MLGELSHAETSSVVIRGSVAYVPQVSWIFNATVRENILFGSDFESERYWR-AIDVTALQH 721
Query: 504 FIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAE-SEKVVQ 562
+D LP T +GE G +SGGQKQR+++ARA+ + I + D+ SALDA + +V
Sbjct: 722 DLDLLPGRDLTEIGERGVNISGGQKQRVSMARAVYSNSDIYIFDDPLSALDAHVAHQVFD 781
Query: 563 EALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVEDPE 612
+ + +T V+V ++L + D I ++ G I E+GT ++L +
Sbjct: 782 SCMKDELKGKTRVLVTNQLHFLPLMDRIILVSEGMIKEEGTFAELSKSGS 831
|
Length = 1495 |
| >gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Score = 94.8 bits (236), Expect = 6e-20
Identities = 73/245 (29%), Positives = 119/245 (48%), Gaps = 40/245 (16%)
Query: 400 QIFSGFSISISSGTTAALVGQSGSGKS-TVISLIERFYDPQA----GEVLIDGINL---K 451
+ + S+ I +G T ALVG+SGSGKS T +S++ P G++ G +L
Sbjct: 23 TVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHAS 82
Query: 452 EFQLQWIR-KKIGLVSQEPVLFTG---SIKDNIA--------YGKDDATTEEI----RVA 495
E L+ +R KI ++ QEP++ +++ + ++ A E + RV
Sbjct: 83 EQTLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHRGMRREAARGEILNCLDRVG 142
Query: 496 TELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDA 555
+ AAK + P QLSGG++QR+ IA A+L P +L+ DE T+ALD
Sbjct: 143 --IRQAAKRLTDYPH-----------QLSGGERQRVMIAMALLTRPELLIADEPTTALDV 189
Query: 556 ESEKVVQEALDRIM--VNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVEDPE 612
+ + + L + +N + + H LS VR AD +AV+ G+ VE+ + L P
Sbjct: 190 SVQAQILQLLRELQQELNMGLLFITHNLSIVRKLADRVAVMQNGRCVEQNRAATLFSAPT 249
Query: 613 GAYSQ 617
Y+Q
Sbjct: 250 HPYTQ 254
|
Length = 529 |
| >gnl|CDD|213228 cd03261, ABC_Org_Solvent_Resistant, ATP-binding cassette transport system involved in resistant to organic solvents | Back alignment and domain information |
|---|
Score = 89.9 bits (224), Expect = 7e-20
Identities = 36/103 (34%), Positives = 63/103 (61%), Gaps = 7/103 (6%)
Query: 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHI 1102
IEL ++ + R V + ++L +R G+ +A++G SGSGKST++ L+ PD+G +
Sbjct: 1 IELRGLTKSFGGR---TVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEV 57
Query: 1103 TLDGVEIQKL---QLKWLRQQMGLVSQEPVLFND-TIRANIAY 1141
+DG +I L +L LR++MG++ Q LF+ T+ N+A+
Sbjct: 58 LIDGEDISGLSEAELYRLRRRMGMLFQSGALFDSLTVFENVAF 100
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|236997 PRK11831, PRK11831, putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Score = 90.6 bits (225), Expect = 7e-20
Identities = 72/249 (28%), Positives = 124/249 (49%), Gaps = 26/249 (10%)
Query: 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 443
+++R V F+ R N IF S+++ G A++G SG GK+T++ LI P GE+
Sbjct: 8 VDMRGVSFT---RGNRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEI 64
Query: 444 LIDGIN---LKEFQLQWIRKKIGLVSQEPVLFTG-SIKDNIAYGKDDATTEEIRVATELA 499
L DG N + +L +RK++ ++ Q LFT ++ DN+AY E ++ L
Sbjct: 65 LFDGENIPAMSRSRLYTVRKRMSMLFQSGALFTDMNVFDNVAY----PLREHTQLPAPLL 120
Query: 500 NAAKFIDKLPQGIDTLVGEHG------TQLSGGQKQRIAIARAILKDPRILLLDEATSAL 553
++ + KL VG G ++LSGG +R A+ARAI +P +++ DE
Sbjct: 121 HSTVMM-KLEA-----VGLRGAAKLMPSELSGGMARRAALARAIALEPDLIMFDEPFVGQ 174
Query: 554 DAESEKVVQEALDRI--MVNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVED 610
D + V+ + + + + T V+V+H + V + AD ++ KIV G+ L +
Sbjct: 175 DPITMGVLVKLISELNSALGVTCVVVSHDVPEVLSIADHAYIVADKKIVAHGSAQALQAN 234
Query: 611 PEGAYSQLI 619
P+ Q +
Sbjct: 235 PDPRVRQFL 243
|
Length = 269 |
| >gnl|CDD|224044 COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 90.1 bits (224), Expect = 8e-20
Identities = 59/234 (25%), Positives = 109/234 (46%), Gaps = 23/234 (9%)
Query: 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 443
IEL++V + I S ++ G A+VG +G+GK+T++SL+ + P +G+V
Sbjct: 32 IELKNVSVRRNGKK---ILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDV 88
Query: 444 LIDGINLKEFQLQW-IRKKIGLVS---QEPVLFTGSIKDNIAYGKDDATTEEIRVATELA 499
+ G + + + +RK+IGLVS E +++D + G + T
Sbjct: 89 TLLGRRFGKGETIFELRKRIGLVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAED 148
Query: 500 -NAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESE 558
AA+++ +L G L LS G+++R+ IARA++KDP +L+LDE LD +
Sbjct: 149 LAAAQWLLEL-LGAKHLADRPFGSLSQGEQRRVLIARALVKDPELLILDEPAQGLDLIAR 207
Query: 559 KVVQEALDRIMVNR---TTVIVAHRLSTVRNADMIAVIHR------GKIVEKGT 603
+ + L+ + + + V H ++ G++V +G
Sbjct: 208 EQLLNRLEELAASPGAPALLFVTHHA-----EEIPPCFTHRLLLKEGEVVAQGK 256
|
Length = 257 |
| >gnl|CDD|163585 TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 89.9 bits (223), Expect = 1e-19
Identities = 60/223 (26%), Positives = 107/223 (47%), Gaps = 38/223 (17%)
Query: 401 IFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRK 460
I G ++ G+ L+G +GSGKST++ L+ P AG V + G++L + +
Sbjct: 16 IVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARAR 75
Query: 461 KIGLVSQE-----PVLFTGSIKDNIAYGK-------------DDATTEEIRVATELANAA 502
++ LV Q+ P+ +++D +A G+ D A + TEL++ A
Sbjct: 76 RVALVEQDSDTAVPL----TVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLA 131
Query: 503 KFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQ 562
+ + TL SGG++QR+ +ARA+ ++P++LLLDE T+ LD ++
Sbjct: 132 D------RDMSTL--------SGGERQRVHVARALAQEPKLLLLDEPTNHLDVRAQLETL 177
Query: 563 EALDRIMVNRTTVIVA-HRLS-TVRNADMIAVIHRGKIVEKGT 603
+ + TV+ A H L+ D + V+ G++V G
Sbjct: 178 ALVRELAATGVTVVAALHDLNLAASYCDHVVVLDGGRVVAAGP 220
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. Length = 256 |
| >gnl|CDD|226929 COG4559, COG4559, ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 89.7 bits (223), Expect = 1e-19
Identities = 58/234 (24%), Positives = 108/234 (46%), Gaps = 25/234 (10%)
Query: 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 443
I ++ +S R ++ G S+ + G A++G +G+GKST++ + P +GEV
Sbjct: 2 IRAENLSYSLAGR---RLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEV 58
Query: 444 LIDGINLKEFQLQWIRKKIGLVSQEPVL-FTGSIKD-----NIAYGKDDATTEEIRVATE 497
++G+ L + + + + ++ Q L F ++++ I + E+ R+A +
Sbjct: 59 TLNGVPLNSWPPEELARHRAVLPQNSSLAFPFTVQEVVQMGRIPHRSGREPEEDERIAAQ 118
Query: 498 LANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIAR------AILKDPRILLLDEATS 551
A + L G LSGG++QR+ +AR + R L LDE TS
Sbjct: 119 ALAAT--------DLSGLAGRDYRTLSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTS 170
Query: 552 ALD-AESEKVVQEALDRIMVNRTTVIVAHRLS-TVRNADMIAVIHRGKIVEKGT 603
ALD A ++ A + V H L+ + AD I ++H+G+++ G+
Sbjct: 171 ALDIAHQHHTLRLARQLAREGGAVLAVLHDLNLAAQYADRIVLLHQGRVIASGS 224
|
Length = 259 |
| >gnl|CDD|226637 COG4167, SapF, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 89.1 bits (221), Expect = 2e-19
Identities = 62/229 (27%), Positives = 116/229 (50%), Gaps = 41/229 (17%)
Query: 406 SISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLV 465
S ++ G T A++G++GSGKST+ ++ +P +GE+LI+ L + K+I ++
Sbjct: 33 SFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPLHFGDYSFRSKRIRMI 92
Query: 466 SQE------PVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTL--VG 517
Q+ P L G I D +R+ T+L + Q +TL VG
Sbjct: 93 FQDPNTSLNPRLRIGQILD-----------FPLRLNTDLEPEQ----RRKQIFETLRMVG 137
Query: 518 ---EHGT----QLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMV 570
+H L+ GQKQR+A+ARA++ P+I++ DEA ++LD ++ L +M+
Sbjct: 138 LLPDHANYYPHMLAPGQKQRVALARALILRPKIIIADEALASLDMS----MRSQLINLML 193
Query: 571 NR------TTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVEDPE 612
+ + V + +++ +D + V+H G++VE+G+ + ++ P
Sbjct: 194 ELQEKQGISYIYVTQHIGMIKHISDQVLVMHEGEVVERGSTADVLASPL 242
|
Length = 267 |
| >gnl|CDD|237453 PRK13633, PRK13633, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 89.4 bits (222), Expect = 2e-19
Identities = 62/237 (26%), Positives = 113/237 (47%), Gaps = 31/237 (13%)
Query: 384 IELRDVYFSYPARPNEQ---IFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQA 440
I+ ++V + Y + ++ + G ++G++GSGKST+ + P
Sbjct: 5 IKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSE 64
Query: 441 GEVLIDGINLKEFQLQW-IRKKIGLVSQEP--VLFTGSIKDNIAYGKDD--ATTEEIRVA 495
G+V +DG++ + + W IR K G+V Q P + +++++A+G ++ EEIR
Sbjct: 65 GKVYVDGLDTSDEENLWDIRNKAGMVFQNPDNQIVATIVEEDVAFGPENLGIPPEEIRER 124
Query: 496 TELA----NAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATS 551
+ + ++ P LSGGQKQR+AIA + P ++ DE T+
Sbjct: 125 VDESLKKVGMYEYRRHAPH-----------LLSGGQKQRVAIAGILAMRPECIIFDEPTA 173
Query: 552 ALDAESEKVVQEALDRIM-VNR----TTVIVAHRLSTVRNADMIAVIHRGKIVEKGT 603
LD + E ++ I +N+ T +++ H + AD I V+ GK+V +GT
Sbjct: 174 MLDPSGRR---EVVNTIKELNKKYGITIILITHYMEEAVEADRIIVMDSGKVVMEGT 227
|
Length = 280 |
| >gnl|CDD|188208 TIGR02323, CP_lyasePhnK, phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Score = 88.7 bits (220), Expect = 2e-19
Identities = 66/247 (26%), Positives = 109/247 (44%), Gaps = 38/247 (15%)
Query: 398 NEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV---LIDGINLKEFQ 454
+ S + G +VG+SGSGKST++ + P G + G L+ +Q
Sbjct: 15 GGKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQ 74
Query: 455 L------QWIRKKIGLVSQEP---VLFTGSIKDNIA----------YGKDDATTEEIRVA 495
L + +R + G V Q P + S NI YG AT ++
Sbjct: 75 LSEAERRRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARHYGNIRATAQDWLEE 134
Query: 496 TELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDA 555
E+ ID LP SGG +QR+ IAR ++ PR++ +DE T LD
Sbjct: 135 VEIDPTR--IDDLP-----------RAFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDV 181
Query: 556 ESEKVVQEALDRIMVNR--TTVIVAHRLSTVR-NADMIAVIHRGKIVEKGTHSKLVEDPE 612
+ + + L ++ + +IV H L R A + V+ +G++VE G ++++DP+
Sbjct: 182 SVQARLLDLLRGLVRDLGLAVIIVTHDLGVARLLAQRLLVMQQGRVVESGLTDQVLDDPQ 241
Query: 613 GAYSQLI 619
Y+QL+
Sbjct: 242 HPYTQLL 248
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se [Central intermediary metabolism, Phosphorus compounds]. Length = 253 |
| >gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain | Back alignment and domain information |
|---|
Score = 85.8 bits (213), Expect = 3e-19
Identities = 33/83 (39%), Positives = 54/83 (65%), Gaps = 3/83 (3%)
Query: 1044 ELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHIT 1103
E+ ++SF+Y R +++L ++AG+ VALVG +GSGKST++ + P +G I
Sbjct: 1 EIENLSFRYGGRT---ALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEIL 57
Query: 1104 LDGVEIQKLQLKWLRQQMGLVSQ 1126
+DG +I KL L+ LR+++G V Q
Sbjct: 58 IDGKDIAKLPLEELRRRIGYVPQ 80
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157 |
| >gnl|CDD|213235 cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of the bacitracin-resistance transporter | Back alignment and domain information |
|---|
Score = 87.3 bits (217), Expect = 3e-19
Identities = 56/212 (26%), Positives = 104/212 (49%), Gaps = 26/212 (12%)
Query: 400 QIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIR 459
++ S+ + G +G +G+GK+T + +I P +GE+ DG + ++
Sbjct: 14 RVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQK--NIEAL 71
Query: 460 KKIGLVSQEPVLF---TG----SIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGI 512
++IG + + P + T + + G +E+ L ++AK K
Sbjct: 72 RRIGALIEAPGFYPNLTARENLRLLARL-LGIRKKRIDEVLDVVGLKDSAK--KK----- 123
Query: 513 DTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNR 572
V S G KQR+ IA A+L +P +L+LDE T+ LD + K ++E + +
Sbjct: 124 ---VK----GFSLGMKQRLGIALALLGNPDLLILDEPTNGLDPDGIKELRELILSLRDQG 176
Query: 573 TTVIVA-HRLSTVRN-ADMIAVIHRGKIVEKG 602
TV+++ H LS ++ AD I +I++GK++E+G
Sbjct: 177 ITVLISSHLLSEIQKVADRIGIINKGKLIEEG 208
|
The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. Length = 208 |
| >gnl|CDD|236870 PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 92.6 bits (231), Expect = 4e-19
Identities = 37/107 (34%), Positives = 65/107 (60%), Gaps = 2/107 (1%)
Query: 1064 LNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMGL 1123
LN + AG+ +ALVG SG+GK+++++ L F P G + ++G+E+++L + R+ +
Sbjct: 369 LNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-PYQGSLKINGIELRELDPESWRKHLSW 427
Query: 1124 VSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQ 1170
V Q P L + T+R N+ G DA++ ++Q A E A +F+ L Q
Sbjct: 428 VGQNPQLPHGTLRDNVLLGN-PDASDEQLQQALENAWVSEFLPLLPQ 473
|
Length = 588 |
| >gnl|CDD|182342 PRK10261, PRK10261, glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 92.6 bits (230), Expect = 4e-19
Identities = 74/227 (32%), Positives = 120/227 (52%), Gaps = 24/227 (10%)
Query: 406 SISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGI---NLKEFQLQWIRKKI 462
S + G T +LVG+SGSGKST + R + Q GE++ +G L +LQ +R+ I
Sbjct: 344 SFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTLSPGKLQALRRDI 403
Query: 463 GLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELAN--AAKFIDKLPQGIDTLVGEHG 520
+ Q+P S+ G D+ E +RV L AA + L + + L+ EH
Sbjct: 404 QFIFQDPY---ASLDPRQTVG--DSIMEPLRVHGLLPGKAAAARVAWLLERVG-LLPEHA 457
Query: 521 ----TQLSGGQKQRIAIARAILKDPRILLLDEATSALDAE-SEKVVQEALDRIMVNRTTV 575
+ SGGQ+QRI IARA+ +P++++ DEA SALD +++ LD + R
Sbjct: 458 WRYPHEFSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLD---LQRDFG 514
Query: 576 I----VAHRLSTV-RNADMIAVIHRGKIVEKGTHSKLVEDPEGAYSQ 617
I ++H ++ V R + +AV++ G+IVE G + E+P+ Y++
Sbjct: 515 IAYLFISHDMAVVERISHRVAVMYLGQIVEIGPRRAVFENPQHPYTR 561
|
Length = 623 |
| >gnl|CDD|224060 COG1137, YhbG, ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 87.3 bits (217), Expect = 5e-19
Identities = 56/222 (25%), Positives = 113/222 (50%), Gaps = 17/222 (7%)
Query: 400 QIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQL-QWI 458
++ + S+ ++SG L+G +G+GK+T +I P +G++L+D ++ + + +
Sbjct: 18 KVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHKRA 77
Query: 459 RKKIGLVSQEPVLFTG-SIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQ--GIDTL 515
R IG + QE +F +++DNI A E + A + +D L + I L
Sbjct: 78 RLGIGYLPQEASIFRKLTVEDNI-----MAVLEIREKDLKKAERKEELDALLEEFHITHL 132
Query: 516 VGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALD----AESEKVVQEALDRIMVN 571
LSGG+++R+ IARA+ +P+ +LLDE + +D + +++++ DR
Sbjct: 133 RDSKAYSLSGGERRRVEIARALAANPKFILLDEPFAGVDPIAVIDIQRIIKHLKDR---G 189
Query: 572 RTTVIVAHRL-STVRNADMIAVIHRGKIVEKGTHSKLVEDPE 612
+I H + T+ D +I GK++ +G+ ++V + +
Sbjct: 190 IGVLITDHNVRETLDICDRAYIISDGKVLAEGSPEEIVNNED 231
|
Length = 243 |
| >gnl|CDD|213236 cd03269, ABC_putative_ATPase, ATP-binding cassette domain of an uncharacterized transporter | Back alignment and domain information |
|---|
Score = 86.6 bits (215), Expect = 6e-19
Identities = 53/208 (25%), Positives = 98/208 (47%), Gaps = 16/208 (7%)
Query: 400 QIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIR 459
S S+ G L+G +G+GK+T I +I P +GEVL DG K + R
Sbjct: 14 TALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDG---KPLDIA-AR 69
Query: 460 KKIGLVSQEPVLFTG-SIKDNIAYGKD--DATTEEIRVATELANAAKFIDKLPQGIDTLV 516
+IG + +E L+ + D + Y EE R +++++L +
Sbjct: 70 NRIGYLPEERGLYPKMKVIDQLVYLAQLKGLKKEEAR-----RRIDEWLERL--ELSEYA 122
Query: 517 GEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVI 576
+ +LS G +Q++ A++ DP +L+LDE S LD + +++++ + + TVI
Sbjct: 123 NKRVEELSKGNQQKVQFIAAVIHDPELLILDEPFSGLDPVNVELLKDVIRELARAGKTVI 182
Query: 577 -VAHRLSTV-RNADMIAVIHRGKIVEKG 602
H++ V D + ++++G+ V G
Sbjct: 183 LSTHQMELVEELCDRVLLLNKGRAVLYG 210
|
This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 210 |
| >gnl|CDD|213260 cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of the nitrate and sulfonate transporters | Back alignment and domain information |
|---|
Score = 86.4 bits (215), Expect = 7e-19
Identities = 35/119 (29%), Positives = 55/119 (46%), Gaps = 10/119 (8%)
Query: 1043 IELHHVSFKYPS-RPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGH 1101
+E+ +VS Y V D++L + G+ VALVG SG GKST++ ++ P +G
Sbjct: 1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGE 60
Query: 1102 ITLDGVEIQKLQLKWLRQQMGLVSQEPVLFN-DTIRANIAYG---KGGDATEAEIQAAS 1156
+ +DG + G V Q+ L T+ N+A G +G EA +A
Sbjct: 61 VLVDGEPVTG-----PGPDRGYVFQQDALLPWLTVLDNVALGLELQGVPKAEARERAEE 114
|
NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|172759 PRK14271, PRK14271, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 87.8 bits (217), Expect = 7e-19
Identities = 62/223 (27%), Positives = 113/223 (50%), Gaps = 7/223 (3%)
Query: 399 EQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDP-----QAGEVLIDGINLKEF 453
+ + S+ + +L+G +GSGK+T + + R D +G+VL+ G ++ +
Sbjct: 34 KTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNY 93
Query: 454 Q-LQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGI 512
+ + R+++G++ Q P F SI DN+ G + +A A L +
Sbjct: 94 RDVLEFRRRVGMLFQRPNPFPMSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWDAV 153
Query: 513 DTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNR 572
+ + +LSGGQ+Q + +AR + +P +LLLDE TSALD + + ++E + +
Sbjct: 154 KDRLSDSPFRLSGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLADRL 213
Query: 573 TTVIVAHRLS-TVRNADMIAVIHRGKIVEKGTHSKLVEDPEGA 614
T +IV H L+ R +D A+ G++VE+G +L P+ A
Sbjct: 214 TVIIVTHNLAQAARISDRAALFFDGRLVEEGPTEQLFSSPKHA 256
|
Length = 276 |
| >gnl|CDD|213213 cd03246, ABCC_Protease_Secretion, ATP-binding cassette domain of PrtD, subfamily C | Back alignment and domain information |
|---|
Score = 84.6 bits (210), Expect = 9e-19
Identities = 35/99 (35%), Positives = 58/99 (58%), Gaps = 5/99 (5%)
Query: 1043 IELHHVSFKYP--SRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAG 1100
+E+ +VSF+YP P V R+++ I G+++A++G SGSGKST+ L+ P +G
Sbjct: 1 LEVENVSFRYPGAEPP---VLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSG 57
Query: 1101 HITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANI 1139
+ LDG +I + L +G + Q+ LF+ +I NI
Sbjct: 58 RVRLDGADISQWDPNELGDHVGYLPQDDELFSGSIAENI 96
|
This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA. Length = 173 |
| >gnl|CDD|183056 PRK11248, tauB, taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 87.1 bits (216), Expect = 9e-19
Identities = 57/186 (30%), Positives = 102/186 (54%), Gaps = 14/186 (7%)
Query: 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 443
+++ +Y Y +P ++++ SG ++G SG GK+T+++LI F Q G +
Sbjct: 2 LQISHLYADYGGKP---ALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSI 58
Query: 444 LIDGINLKEFQLQWIRKKIGLVSQ-EPVLFTGSIKDNIAYGKDDATTEEIRVATELANAA 502
+DG ++ + G+V Q E +L +++DN+A+G A E+ L A
Sbjct: 59 TLDGKPVEGPGAER-----GVVFQNEGLLPWRNVQDNVAFGLQLAGVEK---MQRLEIAH 110
Query: 503 KFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQ 562
+ + K+ G++ + QLSGGQ+QR+ IARA+ +P++LLLDE ALDA + + +Q
Sbjct: 111 QMLKKV--GLEGAEKRYIWQLSGGQRQRVGIARALAANPQLLLLDEPFGALDAFTREQMQ 168
Query: 563 EALDRI 568
L ++
Sbjct: 169 TLLLKL 174
|
Length = 255 |
| >gnl|CDD|224045 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 86.8 bits (216), Expect = 1e-18
Identities = 35/133 (26%), Positives = 60/133 (45%), Gaps = 13/133 (9%)
Query: 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHI 1102
+E+ ++SF Y +P + DL+ I G+ ++G +GSGKST++ L P +G +
Sbjct: 3 LEVENLSFGYGGKP---ILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEV 59
Query: 1103 TLDGVEIQKLQLKWLRQQMGLVSQEPVL-FNDTIRANIAYGK---------GGDATEAEI 1152
LDG +I L K L +++ V Q P F T+ + G+ E +
Sbjct: 60 LLDGKDIASLSPKELAKKLAYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIV 119
Query: 1153 QAASEMANAHKFI 1165
+ A E+
Sbjct: 120 EEALELLGLEHLA 132
|
Length = 258 |
| >gnl|CDD|183055 PRK11247, ssuB, aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 87.0 bits (216), Expect = 1e-18
Identities = 71/222 (31%), Positives = 105/222 (47%), Gaps = 33/222 (14%)
Query: 386 LRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLI 445
L V Y R + + + I +G A+VG+SG GKST++ L+ P AGE+L
Sbjct: 15 LNAVSKRYGER---TVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLA 71
Query: 446 DGINLKEFQLQWIRKKIGLVSQEPVLFT-GSIKDNIAYG-----KDDATTEEIRVATELA 499
L E R+ L+ Q+ L + DN+ G +D A + A LA
Sbjct: 72 GTAPLAE-----AREDTRLMFQDARLLPWKKVIDNVGLGLKGQWRDAA--LQALAAVGLA 124
Query: 500 NAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEK 559
+ A E LSGGQKQR+A+ARA++ P +LLLDE ALDA +
Sbjct: 125 DRA--------------NEWPAALSGGQKQRVALARALIHRPGLLLLDEPLGALDALTRI 170
Query: 560 VVQEALDRIMVNR--TTVIVAHRLS-TVRNADMIAVIHRGKI 598
+Q+ ++ + T ++V H +S V AD + +I GKI
Sbjct: 171 EMQDLIESLWQQHGFTVLLVTHDVSEAVAMADRVLLIEEGKI 212
|
Length = 257 |
| >gnl|CDD|182716 PRK10771, thiQ, thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 86.2 bits (214), Expect = 1e-18
Identities = 61/219 (27%), Positives = 106/219 (48%), Gaps = 33/219 (15%)
Query: 405 FSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGL 464
F +++ G A++G SG+GKST+++LI F P +G + ++G + R+ + +
Sbjct: 18 FDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPPS--RRPVSM 75
Query: 465 VSQEPVLFTG-SIKDNIAYGKD---------DATTEEI--RVATELANAAKFIDKLPQGI 512
+ QE LF+ ++ NI G + I ++ E + +LP
Sbjct: 76 LFQENNLFSHLTVAQNIGLGLNPGLKLNAAQREKLHAIARQMGIE-----DLLARLP--- 127
Query: 513 DTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNR 572
QLSGGQ+QR+A+AR ++++ ILLLDE SALD + + + ++ R
Sbjct: 128 --------GQLSGGQRQRVALARCLVREQPILLLDEPFSALDPALRQEMLTLVSQVCQER 179
Query: 573 --TTVIVAHRLS-TVRNADMIAVIHRGKIVEKGTHSKLV 608
T ++V+H L R A V+ G+I G +L+
Sbjct: 180 QLTLLMVSHSLEDAARIAPRSLVVADGRIAWDGPTDELL 218
|
Length = 232 |
| >gnl|CDD|223473 COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 86.5 bits (215), Expect = 1e-18
Identities = 65/232 (28%), Positives = 111/232 (47%), Gaps = 23/232 (9%)
Query: 385 ELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKST---VISLIERFYDPQAG 441
E++D++ ++I G ++++ G A++G +GSGKST I + Y+ G
Sbjct: 5 EIKDLHVE--VEGKKEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPK-YEVTEG 61
Query: 442 EVLIDGINLKEFQL-QWIRKKIGLVSQEPVLFTG-SIKD------NIAYGKDDATTEEIR 493
E+L DG ++ E + R I L Q PV G + D N G E I+
Sbjct: 62 EILFDGEDILELSPDERARAGIFLAFQYPVEIPGVTNSDFLRAAMNARRGARGILPEFIK 121
Query: 494 VATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSAL 553
E A ++ ++ V E SGG+K+R I + +L +P++ +LDE S L
Sbjct: 122 ELKEKAELLGLDEEF---LERYVNE---GFSGGEKKRNEILQLLLLEPKLAILDEPDSGL 175
Query: 554 DAESEKVVQEALDRIM-VNRTTVIVAH--RLSTVRNADMIAVIHRGKIVEKG 602
D ++ K+V E ++ + R +I+ H RL D + V++ G+IV+ G
Sbjct: 176 DIDALKIVAEGINALREEGRGVLIITHYQRLLDYIKPDKVHVLYDGRIVKSG 227
|
Length = 251 |
| >gnl|CDD|184203 PRK13643, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 87.1 bits (215), Expect = 1e-18
Identities = 68/246 (27%), Positives = 127/246 (51%), Gaps = 32/246 (13%)
Query: 384 IELRDVYFSYPARPNEQIFS----GFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQ 439
I+ V ++Y +PN S + + G+ AL+G +GSGKST++ + P
Sbjct: 2 IKFEKVNYTY--QPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPT 59
Query: 440 AGEVLIDGINL----KEFQLQWIRKKIGLVSQEP--VLFTGSIKDNIAYGKDD---ATTE 490
G+V + I + K+ +++ +RKK+G+V Q P LF ++ ++A+G + +
Sbjct: 60 EGKVTVGDIVVSSTSKQKEIKPVRKKVGVVFQFPESQLFEETVLKDVAFGPQNFGIPKEK 119
Query: 491 EIRVATE----LANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLL 546
++A E + A +F +K P +LSGGQ +R+AIA + +P +L+L
Sbjct: 120 AEKIAAEKLEMVGLADEFWEKSP-----------FELSGGQMRRVAIAGILAMEPEVLVL 168
Query: 547 DEATSALDAESEKVVQEALDRI-MVNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTH 604
DE T+ LD ++ + + + I +T V+V H + V + AD + ++ +G I+ GT
Sbjct: 169 DEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLMDDVADYADYVYLLEKGHIISCGTP 228
Query: 605 SKLVED 610
S + ++
Sbjct: 229 SDVFQE 234
|
Length = 288 |
| >gnl|CDD|226647 COG4181, COG4181, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 85.1 bits (211), Expect = 2e-18
Identities = 62/212 (29%), Positives = 99/212 (46%), Gaps = 22/212 (10%)
Query: 401 IFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDG---INLKEFQLQW 457
I G + + G T A+VG SGSGKST+++++ DP +GEV + G L E
Sbjct: 25 ILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDARAA 84
Query: 458 IR-KKIGLVSQEPVLF-TGSIKDNIAYG---KDDATTEEIRVATELANAAKFIDKLPQGI 512
+R + +G V Q L + +N+A + +++ + A L A G+
Sbjct: 85 LRARHVGFVFQSFHLIPNLTALENVALPLELRGESSADSRAGAKALLEAV--------GL 136
Query: 513 DTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNR 572
+ + QLSGG++QR+A+ARA P +L DE T LD + + + L +NR
Sbjct: 137 GKRLTHYPAQLSGGEQQRVALARAFAGRPDVLFADEPTGNLDRATGDKIADLL--FALNR 194
Query: 573 ----TTVIVAHRLSTVRNADMIAVIHRGKIVE 600
T V+V H D + G++VE
Sbjct: 195 ERGTTLVLVTHDPQLAARCDRQLRLRSGRLVE 226
|
Length = 228 |
| >gnl|CDD|163452 TIGR03740, galliderm_ABC, gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 85.1 bits (211), Expect = 2e-18
Identities = 64/233 (27%), Positives = 112/233 (48%), Gaps = 33/233 (14%)
Query: 398 NEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQW 457
+ + S+++ + L+G +G+GKST++ +I P +GE++ DG W
Sbjct: 12 KQTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDG-------HPW 64
Query: 458 IRK---KIGLVSQEPVLFTG-SIKDNIAY-----GKDDATTEEIRVATELANAAKFIDKL 508
RK KIG + + P L+ + ++N+ G D+ +E+ +L N K
Sbjct: 65 TRKDLHKIGSLIESPPLYENLTARENLKVHTTLLGLPDSRIDEVLNIVDLTN----TGKK 120
Query: 509 PQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRI 568
Q S G KQR+ IA A+L P++L+LDE T+ LD + ++E +
Sbjct: 121 KAK----------QFSLGMKQRLGIAIALLNHPKLLILDEPTNGLDPIGIQELRELIRSF 170
Query: 569 MVNRTTVIV-AHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVEDPEGAYSQLI 619
TVI+ +H LS V+ AD I +I G + +G +K E+ E + +++
Sbjct: 171 PEQGITVILSSHILSEVQQLADHIGIISEGVLGYQGKINK-SENLEKLFVEVV 222
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. Length = 223 |
| >gnl|CDD|213197 cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A | Back alignment and domain information |
|---|
Score = 83.2 bits (207), Expect = 3e-18
Identities = 28/103 (27%), Positives = 61/103 (59%), Gaps = 5/103 (4%)
Query: 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHI 1102
IE+ ++S +Y + D++L + G+ L+G +G+GK+T++ ++ PD+G I
Sbjct: 1 IEVRNLSKRYGKKT---ALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEI 57
Query: 1103 TLDGVEIQKLQLKWLRQQMGLVSQEPVLFND-TIRANIAYGKG 1144
+ G +I+K + +++++G + +EP L+ + T+R N+ G
Sbjct: 58 KVLGKDIKKEPEE-VKRRIGYLPEEPSLYENLTVRENLKLSGG 99
|
This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 173 |
| >gnl|CDD|237419 PRK13536, PRK13536, nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Score = 87.6 bits (217), Expect = 3e-18
Identities = 71/235 (30%), Positives = 123/235 (52%), Gaps = 23/235 (9%)
Query: 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 443
I+L V SY + + +G S +++SG L+G +G+GKST+ +I P AG++
Sbjct: 42 IDLAGVSKSYGDKA---VVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKI 98
Query: 444 LIDGINLKEFQLQWIRKKIGLVSQEPVL---FTGSIKDN-IAYGKD-DATTEEIR-VATE 497
+ G+ + + + R +IG+V Q L FT +++N + +G+ +T EI V
Sbjct: 99 TVLGVPVPA-RARLARARIGVVPQFDNLDLEFT--VRENLLVFGRYFGMSTREIEAVIPS 155
Query: 498 LANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAES 557
L A+ K D V + LSGG K+R+ +ARA++ DP++L+LDE T+ LD +
Sbjct: 156 LLEFARLESK----ADARV----SDLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHA 207
Query: 558 EKVVQEALDRIMV-NRTTVIVAHRLSTV-RNADMIAVIHRG-KIVEKGTHSKLVE 609
++ E L ++ +T ++ H + R D + V+ G KI E H+ + E
Sbjct: 208 RHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLEAGRKIAEGRPHALIDE 262
|
Length = 340 |
| >gnl|CDD|223487 COG0410, LivF, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 85.2 bits (212), Expect = 3e-18
Identities = 58/228 (25%), Positives = 105/228 (46%), Gaps = 30/228 (13%)
Query: 400 QIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWI- 458
Q G S+ + G AL+G++G+GK+T++ I P++G ++ DG ++
Sbjct: 17 QALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHERA 76
Query: 459 RKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEE-IRVATELANAAKFIDKLPQGIDTLV- 516
R I V + +F T EE + + + ++ + + L
Sbjct: 77 RLGIAYVPEGRRIFP------------RLTVEENLLLGAYARRDKEAQERDLEEVYELFP 124
Query: 517 ------GEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRI-M 569
+ LSGG++Q +AIARA++ P++LLLDE + L + K+V+E + I
Sbjct: 125 RLKERRNQRAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGL---APKIVEEIFEAIKE 181
Query: 570 VNR----TTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVEDPE 612
+ + T ++V AD V+ G+IV GT ++L+ DP+
Sbjct: 182 LRKEGGMTILLVEQNARFALEIADRGYVLENGRIVLSGTAAELLADPD 229
|
Length = 237 |
| >gnl|CDD|213185 cd03218, ABC_YhbG, ATP-binding cassette component of YhbG transport system | Back alignment and domain information |
|---|
Score = 84.9 bits (211), Expect = 3e-18
Identities = 59/228 (25%), Positives = 113/228 (49%), Gaps = 27/228 (11%)
Query: 398 NEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQL-Q 456
++ +G S+S+ G L+G +G+GK+T +I P +G++L+DG ++ + + +
Sbjct: 12 KRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHK 71
Query: 457 WIRKKIGLVSQEPVLFTG-SIKDNIA-----YGKDDATTEEIRVATELANAAKFIDKLPQ 510
R IG + QE +F ++++NI G EE +++
Sbjct: 72 RARLGIGYLPQEASIFRKLTVEENILAVLEIRGLSKKEREEKLEE--------LLEEF-- 121
Query: 511 GIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALD----AESEKVVQEALD 566
I L + LSGG+++R+ IARA+ +P+ LLLDE + +D + +K+++ D
Sbjct: 122 HITHLRKSKASSLSGGERRRVEIARALATNPKFLLLDEPFAGVDPIAVQDIQKIIKILKD 181
Query: 567 R-IMVNRTTVIVAHRLS-TVRNADMIAVIHRGKIVEKGTHSKLVEDPE 612
R I V +I H + T+ D +I+ GK++ +GT ++ +
Sbjct: 182 RGIGV----LITDHNVRETLSITDRAYIIYEGKVLAEGTPEEIAANEL 225
|
The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. Length = 232 |
| >gnl|CDD|183280 PRK11701, phnK, phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Score = 85.4 bits (212), Expect = 3e-18
Identities = 76/246 (30%), Positives = 111/246 (45%), Gaps = 46/246 (18%)
Query: 402 FSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV--------LIDGINLKEF 453
S + G +VG+SGSGK+T+++ + P AGEV L D L E
Sbjct: 22 CRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALSEA 81
Query: 454 QLQWI-RKKIGLVSQEP---VLFTGSIKDNIA----------YGKDDATTEEIRVATELA 499
+ + + R + G V Q P + S NI YG AT + E+
Sbjct: 82 ERRRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVGARHYGDIRATAGDWLERVEID 141
Query: 500 NAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEK 559
A ID LP T SGG +QR+ IAR ++ PR++ +DE T LD
Sbjct: 142 --AARIDDLP-----------TTFSGGMQQRLQIARNLVTHPRLVFMDEPTGGLDVS--- 185
Query: 560 VVQ-EALD--RIMVNR---TTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVEDPE 612
VQ LD R +V VIV H L+ R A + V+ +G++VE G ++++DP+
Sbjct: 186 -VQARLLDLLRGLVRELGLAVVIVTHDLAVARLLAHRLLVMKQGRVVESGLTDQVLDDPQ 244
Query: 613 GAYSQL 618
Y+QL
Sbjct: 245 HPYTQL 250
|
Length = 258 |
| >gnl|CDD|213224 cd03257, ABC_NikE_OppD_transporters, ATP-binding cassette domain of nickel/oligopeptides specific transporters | Back alignment and domain information |
|---|
Score = 84.5 bits (210), Expect = 4e-18
Identities = 31/90 (34%), Positives = 53/90 (58%), Gaps = 4/90 (4%)
Query: 1043 IELHHVSFKYPSRPD-VQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGH 1101
+E+ ++S +P+ V+ D++ I+ G+T+ LVGESGSGKST+ + P +G
Sbjct: 2 LEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGS 61
Query: 1102 ITLDGVEIQKL---QLKWLRQQMGLVSQEP 1128
I DG ++ KL K R+++ +V Q+P
Sbjct: 62 IIFDGKDLLKLSRRLRKIRRKEIQMVFQDP 91
|
The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. Length = 228 |
| >gnl|CDD|226620 COG4136, COG4136, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 84.1 bits (208), Expect = 4e-18
Identities = 50/163 (30%), Positives = 82/163 (50%), Gaps = 12/163 (7%)
Query: 397 PNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQ---AGEVLIDGINLKEF 453
P + + + +I+ G L+G SG GKST++S + Q GE+ ++ L
Sbjct: 13 PGSCLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLD-- 70
Query: 454 QLQWIRKKIGLVSQEPVLFTG-SIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGI 512
L +++IG++ Q+ +LF S+ N+ + R ANAA +++ G+
Sbjct: 71 MLPAAQRQIGILFQDALLFPHLSVGQNLLFALPATLKGNAR--RNAANAA--LERS--GL 124
Query: 513 DTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDA 555
D + LSGGQ+ R+A+ RA+L P+ LLLDE S LD
Sbjct: 125 DGAFHQDPATLSGGQRARVALLRALLAQPKALLLDEPFSRLDV 167
|
Length = 213 |
| >gnl|CDD|163508 TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Score = 89.6 bits (223), Expect = 5e-18
Identities = 35/100 (35%), Positives = 59/100 (59%), Gaps = 1/100 (1%)
Query: 1041 GEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAG 1100
G +EL +++F Y S + + + +L ++ G+ VALVG SGSGKST+ L+ Y P +G
Sbjct: 476 GYVELRNITFGY-SPLEPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSG 534
Query: 1101 HITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIA 1140
I DG+ +++ + L + +V Q+ LF T+R N+
Sbjct: 535 EILFDGIPREEIPREVLANSVAMVDQDIFLFEGTVRDNLT 574
|
This protein describes a multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHLM, Nitrile Hydratase Leader Microcin [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 710 |
| >gnl|CDD|130252 TIGR01184, ntrCD, nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Score = 84.4 bits (209), Expect = 5e-18
Identities = 64/198 (32%), Positives = 94/198 (47%), Gaps = 49/198 (24%)
Query: 404 GFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKE--------FQ- 454
G +++I G +L+G SG GKST+++LI P +G V+++G + E FQ
Sbjct: 3 GVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGPDRMVVFQN 62
Query: 455 ---LQWIRKKIGLVSQEPVLFTGSIKDNIAYGKD----DATTEE----IRVATELANAAK 503
L W+ ++++NIA D D + E + L +
Sbjct: 63 YSLLPWL----------------TVRENIALAVDRVLPDLSKSERRAIVEEHIALVGLTE 106
Query: 504 FIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQE 563
DK P QLSGG KQR+AIARA+ P++LLLDE ALDA + +QE
Sbjct: 107 AADKRP-----------GQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQE 155
Query: 564 ALDRIMV-NRTTVI-VAH 579
L +I +R TV+ V H
Sbjct: 156 ELMQIWEEHRVTVLMVTH 173
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase [Transport and binding proteins, Anions, Transport and binding proteins, Other]. Length = 230 |
| >gnl|CDD|237451 PRK13631, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 86.4 bits (214), Expect = 5e-18
Identities = 65/257 (25%), Positives = 119/257 (46%), Gaps = 28/257 (10%)
Query: 380 IRGDIELR--DVYFSYPARPNEQI--FSGFSISISSGTTAALVGQSGSGKSTVISLIERF 435
+ DI LR ++Y + + ++ + S + ++G SGSGKST+++
Sbjct: 16 LSDDIILRVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGL 75
Query: 436 YDPQAGEVLIDGINLK---EFQLQWI-------------RKKIGLVSQEP--VLFTGSIK 477
+ G + + I + R+++ +V Q P LF +I+
Sbjct: 76 IKSKYGTIQVGDIYIGDKKNNHELITNPYSKKIKNFKELRRRVSMVFQFPEYQLFKDTIE 135
Query: 478 DNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAI 537
+I +G ++ A +LA +++K+ D+ + LSGGQK+R+AIA +
Sbjct: 136 KDIMFGPVALGVKKSE-AKKLA--KFYLNKMGLD-DSYLERSPFGLSGGQKRRVAIAGIL 191
Query: 538 LKDPRILLLDEATSALDAESEK-VVQEALDRIMVNRTTVIVAHRLSTVRN-ADMIAVIHR 595
P IL+ DE T+ LD + E ++Q LD N+T ++ H + V AD + V+ +
Sbjct: 192 AIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTMEHVLEVADEVIVMDK 251
Query: 596 GKIVEKGTHSKLVEDPE 612
GKI++ GT ++ D
Sbjct: 252 GKILKTGTPYEIFTDQH 268
|
Length = 320 |
| >gnl|CDD|226646 COG4178, COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 88.9 bits (221), Expect = 5e-18
Identities = 53/215 (24%), Positives = 95/215 (44%), Gaps = 25/215 (11%)
Query: 376 ILDDIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERF 435
D+ I L ++ P + + S + + G + G+SG+GK++++ +
Sbjct: 385 FDDNADHGITLENLSLRTPD--GQTLLSELNFEVRPGERLLITGESGAGKTSLLRALAGL 442
Query: 436 YDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAY--GKDDATTEEIR 493
+ +G + + + F + Q P L G++++ + Y D + E+
Sbjct: 443 WPWGSGRISMPADSALLF-----------LPQRPYLPQGTLREALCYPNAAPDFSDAELV 491
Query: 494 VATELANAAKFIDKLPQGID-TLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSA 552
++L + V LSGG++QR+A AR +L P+ + LDEATSA
Sbjct: 492 AVLHKVGLGDLAERLDEEDRWDRV------LSGGEQQRLAFARLLLHKPKWVFLDEATSA 545
Query: 553 LDAESEKVVQEALDRIMVNRTTVI-VAHRLSTVRN 586
LD E+E + + L + TVI V HR T+ N
Sbjct: 546 LDEETEDRLYQLLKE-ELPDATVISVGHR-PTLWN 578
|
Length = 604 |
| >gnl|CDD|182829 PRK10908, PRK10908, cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Score = 83.4 bits (206), Expect = 7e-18
Identities = 63/188 (33%), Positives = 103/188 (54%), Gaps = 19/188 (10%)
Query: 400 QIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGIN---LKEFQLQ 456
Q G + + G A L G SG+GKST++ LI P AG++ G + LK ++
Sbjct: 16 QALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVP 75
Query: 457 WIRKKIGLVSQEP-VLFTGSIKDNIAYGK--DDATTEEIRVATELANAAKFIDKLPQGID 513
++R++IG++ Q+ +L ++ DN+A A+ ++IR A +DK+ G+
Sbjct: 76 FLRRQIGMIFQDHHLLMDRTVYDNVAIPLIIAGASGDDIRRRVSAA-----LDKV--GLL 128
Query: 514 TLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALD-AESEKVVQ--EALDRIMV 570
QLSGG++QR+ IARA++ P +LL DE T LD A SE +++ E +R+ V
Sbjct: 129 DKAKNFPIQLSGGEQQRVGIARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNRVGV 188
Query: 571 NRTTVIVA 578
TV++A
Sbjct: 189 ---TVLMA 193
|
Length = 222 |
| >gnl|CDD|237648 PRK14250, PRK14250, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 84.1 bits (208), Expect = 8e-18
Identities = 40/101 (39%), Positives = 64/101 (63%), Gaps = 3/101 (2%)
Query: 1042 EIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGH 1101
EIE VS+ S ++ +D+++K G +VG SG+GKST++ L+ R DP G
Sbjct: 3 EIEFKEVSY---SSFGKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGS 59
Query: 1102 ITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYG 1142
I +DGV+I+ + + LR+++G+V Q+P LF T++ NI YG
Sbjct: 60 ILIDGVDIKTIDVIDLRRKIGMVFQQPHLFEGTVKDNIEYG 100
|
Length = 241 |
| >gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins | Back alignment and domain information |
|---|
Score = 81.7 bits (203), Expect = 1e-17
Identities = 30/83 (36%), Positives = 47/83 (56%), Gaps = 3/83 (3%)
Query: 1044 ELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHIT 1103
E+ ++S Y R V DL+L I AG+ V ++G +G+GKST++ L P +G I
Sbjct: 1 EVENLSVGYGGRT---VLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEIL 57
Query: 1104 LDGVEIQKLQLKWLRQQMGLVSQ 1126
LDG ++ L K L +++ V Q
Sbjct: 58 LDGKDLASLSPKELARKIAYVPQ 80
|
ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. Length = 180 |
| >gnl|CDD|213232 cd03265, ABC_DrrA, Daunorubicin/doxorubicin resistance ATP-binding protein | Back alignment and domain information |
|---|
Score = 82.4 bits (204), Expect = 2e-17
Identities = 56/217 (25%), Positives = 103/217 (47%), Gaps = 28/217 (12%)
Query: 404 GFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGIN-LKEFQLQWIRKKI 462
G S + G L+G +G+GK+T I ++ P +G + G + ++E + +R++I
Sbjct: 18 GVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVRE--PREVRRRI 75
Query: 463 GLVSQEPVL---FTGSIKDNIA-----YG-KDDATTEEIRVATELANAAKFIDKLPQGID 513
G+V Q+ + TG +N+ YG E I + + D+L
Sbjct: 76 GIVFQDLSVDDELTG--WENLYIHARLYGVPGAERRERIDELLDFVGLLEAADRL----- 128
Query: 514 TLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIM--VN 571
V + SGG ++R+ IAR+++ P +L LDE T LD ++ V E ++++
Sbjct: 129 --VKTY----SGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFG 182
Query: 572 RTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKL 607
T ++ H + D +A+I G+I+ +GT +L
Sbjct: 183 MTILLTTHYMEEAEQLCDRVAIIDHGRIIAEGTPEEL 219
|
DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|182528 PRK10535, PRK10535, macrolide transporter ATP-binding /permease protein; Provisional | Back alignment and domain information |
|---|
Score = 86.3 bits (214), Expect = 4e-17
Identities = 68/223 (30%), Positives = 115/223 (51%), Gaps = 12/223 (5%)
Query: 384 IELRDVYFSYPARPNE-QIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGE 442
+EL+D+ SYP+ + ++ G S+ I +G A+VG SGSGKST+++++ P +G
Sbjct: 5 LELKDIRRSYPSGEEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGT 64
Query: 443 VLIDGINLKEF---QLQWIRKK-IGLVSQEPVLFTG-SIKDNIAYGKDDATTEEIRVATE 497
+ G ++ L +R++ G + Q L + + N+ A E
Sbjct: 65 YRVAGQDVATLDADALAQLRREHFGFIFQRYHLLSHLTAAQNVEVPAVYAGLER---KQR 121
Query: 498 LANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAES 557
L A + + +L G++ V +QLSGGQ+QR++IARA++ +++L DE T ALD+ S
Sbjct: 122 LLRAQELLQRL--GLEDRVEYQPSQLSGGQQQRVSIARALMNGGQVILADEPTGALDSHS 179
Query: 558 EKVVQEALDRIMVNRTTVI-VAHRLSTVRNADMIAVIHRGKIV 599
+ V L ++ TVI V H A+ + I G+IV
Sbjct: 180 GEEVMAILHQLRDRGHTVIIVTHDPQVAAQAERVIEIRDGEIV 222
|
Length = 648 |
| >gnl|CDD|184198 PRK13638, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 82.0 bits (202), Expect = 6e-17
Identities = 61/226 (26%), Positives = 104/226 (46%), Gaps = 24/226 (10%)
Query: 388 DVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDG 447
D++F Y +E + G ++ S LVG +G GKST+ + PQ G VL G
Sbjct: 6 DLWFRYQ---DEPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQG 62
Query: 448 --INLKEFQLQWIRKKIGLVSQEP--VLFTGSIKDNIAYGKDDATTEEIRVATELANAAK 503
++ + L +R+++ V Q+P +F I +IA+ + E + + A
Sbjct: 63 KPLDYSKRGLLALRQQVATVFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEITRRVDEALT 122
Query: 504 FIDKLPQGIDTLVGEHGTQ-----LSGGQKQRIAIARAILKDPRILLLDEATSALDAESE 558
+D +H LS GQK+R+AIA A++ R LLLDE T+ LD
Sbjct: 123 LVD----------AQHFRHQPIQCLSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGR 172
Query: 559 KVVQEALDRIMVN-RTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKG 602
+ + RI+ +I +H + + +D + V+ +G+I+ G
Sbjct: 173 TQMIAIIRRIVAQGNHVIISSHDIDLIYEISDAVYVLRQGQILTHG 218
|
Length = 271 |
| >gnl|CDD|224058 COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 83.1 bits (206), Expect = 7e-17
Identities = 33/105 (31%), Positives = 60/105 (57%), Gaps = 6/105 (5%)
Query: 1043 IELHHVSFKYPSR--PDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAG 1100
IEL +VS + V D++L+I G+ ++G SG+GKST++ L+ P +G
Sbjct: 2 IELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSG 61
Query: 1101 HITLDGVEIQKL---QLKWLRQQMGLVSQEPVLFND-TIRANIAY 1141
+ +DG ++ L +L+ LRQ++G++ Q L + T+ N+A+
Sbjct: 62 SVFVDGQDLTALSEAELRQLRQKIGMIFQHFNLLSSRTVFENVAF 106
|
Length = 339 |
| >gnl|CDD|224050 COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 82.7 bits (205), Expect = 7e-17
Identities = 37/100 (37%), Positives = 59/100 (59%), Gaps = 4/100 (4%)
Query: 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHI 1102
IE +VS +Y ++ D+NL I G+ + L+G SGSGK+T + ++ R +P +G I
Sbjct: 2 IEFENVSKRYGNKK---AVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEI 58
Query: 1103 TLDGVEIQKLQLKWLRQQMGLVSQEPVLF-NDTIRANIAY 1141
+DG +I L LR+++G V Q+ LF + T+ NIA
Sbjct: 59 LIDGEDISDLDPVELRRKIGYVIQQIGLFPHLTVAENIAT 98
|
Length = 309 |
| >gnl|CDD|226592 COG4107, PhnK, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 81.7 bits (202), Expect = 7e-17
Identities = 72/248 (29%), Positives = 108/248 (43%), Gaps = 48/248 (19%)
Query: 402 FSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV---LIDGINLKEFQL--- 455
S + G +VG+SGSGK+T++ I P AG V + DG + +
Sbjct: 22 CRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAGTVTYRMRDGQPRDLYTMSEA 81
Query: 456 ---QWIRKKIGLVSQEP---VLFTGSIKDNIA----------YGKDDATTEEI--RVATE 497
+ +R + G V Q P + S NI YG A ++ V +
Sbjct: 82 ERRRLLRTEWGFVHQNPRDGLRMQVSAGGNIGERLMAIGARHYGNIRAEAQDWLEEVEID 141
Query: 498 LANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAES 557
L ID LP SGG +QR+ IAR ++ PR++ +DE T LD
Sbjct: 142 LDR----IDDLP-----------RTFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVS- 185
Query: 558 EKVVQEALD--RIMVNR---TTVIVAHRLSTVR-NADMIAVIHRGKIVEKGTHSKLVEDP 611
V LD R +V VIV H L+ R AD + V+ +G++VE G ++++DP
Sbjct: 186 --VQARLLDLLRGLVRELGLAVVIVTHDLAVARLLADRLMVMKQGQVVESGLTDRVLDDP 243
Query: 612 EGAYSQLI 619
Y+QL+
Sbjct: 244 HHPYTQLL 251
|
Length = 258 |
| >gnl|CDD|182342 PRK10261, PRK10261, glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 85.3 bits (211), Expect = 8e-17
Identities = 69/243 (28%), Positives = 119/243 (48%), Gaps = 43/243 (17%)
Query: 406 SISISSGTTAALVGQSGSGKS-TVISLIERFYDPQAGEVLIDG----------INLKEF- 453
S S+ G T A+VG+SGSGKS T ++L+ R + G V D I L E
Sbjct: 36 SFSLQRGETLAIVGESGSGKSVTALALM-RLLEQAGGLVQCDKMLLRRRSRQVIELSEQS 94
Query: 454 --QLQWIR-KKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRV------ATELANAAKF 504
Q++ +R + ++ QEP+ S+ G+ A E IR+ + A +
Sbjct: 95 AAQMRHVRGADMAMIFQEPMT---SLNPVFTVGEQIA--ESIRLHQGASREEAMVEAKRM 149
Query: 505 ID--KLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESE---- 558
+D ++P+ T++ + QLSGG +QR+ IA A+ P +L+ DE T+ALD +
Sbjct: 150 LDQVRIPEA-QTILSRYPHQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQIL 208
Query: 559 ---KVVQEALDRIMVNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVEDPEGA 614
KV+Q+ + + + H + V AD + V+++G+ VE G+ ++ P+
Sbjct: 209 QLIKVLQKEMS-----MGVIFITHDMGVVAEIADRVLVMYQGEAVETGSVEQIFHAPQHP 263
Query: 615 YSQ 617
Y++
Sbjct: 264 YTR 266
|
Length = 623 |
| >gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Score = 84.4 bits (209), Expect = 1e-16
Identities = 76/236 (32%), Positives = 119/236 (50%), Gaps = 27/236 (11%)
Query: 403 SGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEF---QLQWIR 459
S ++ G T LVG+SGSGKST + R + Q GE+ DG L QL +R
Sbjct: 303 KNISFTLRPGETLGLVGESGSGKSTTGLALLRLINSQ-GEIWFDGQPLHNLNRRQLLPVR 361
Query: 460 KKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAA----KFIDKLPQ-GID- 513
+I +V Q+P S+ N E +RV +AA + I + + G+D
Sbjct: 362 HRIQVVFQDP---NSSL--NPRLNVLQIIEEGLRVHQPTLSAAQREQQVIAVMEEVGLDP 416
Query: 514 TLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQE---ALDRIMV 570
+ + SGGQ+QRIAIARA++ P +++LDE TS+LD K VQ AL + +
Sbjct: 417 ETRHRYPAEFSGGQRQRIAIARALILKPSLIILDEPTSSLD----KTVQAQILALLKSLQ 472
Query: 571 NR---TTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVEDPEGAYS-QLIRL 621
+ + ++H L VR + V+ +G++VE+G ++ P+ Y+ QL+ L
Sbjct: 473 QKHQLAYLFISHDLHVVRALCHQVIVLRQGEVVEQGDCERVFAAPQQEYTRQLLAL 528
|
Length = 529 |
| >gnl|CDD|182561 PRK10575, PRK10575, iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 81.4 bits (201), Expect = 1e-16
Identities = 66/240 (27%), Positives = 116/240 (48%), Gaps = 28/240 (11%)
Query: 386 LRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLI 445
LR+V F P R + S++ +G L+G +GSGKST++ ++ R P GE+L+
Sbjct: 14 LRNVSFRVPGR---TLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILL 70
Query: 446 DGINLKEFQLQWIRKKIGLVSQE-PVLFTGSIKDNIAYGK----------DDATTEEIRV 494
D L+ + + +K+ + Q+ P ++++ +A G+ A E++
Sbjct: 71 DAQPLESWSSKAFARKVAYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEE 130
Query: 495 ATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALD 554
A L +L +D+L SGG++QR IA + +D R LLLDE TSALD
Sbjct: 131 AISLVGLKPLAHRL---VDSL--------SGGERQRAWIAMLVAQDSRCLLLDEPTSALD 179
Query: 555 AESEKVVQEALDRIMVNR--TTVIVAHRLS-TVRNADMIAVIHRGKIVEKGTHSKLVEDP 611
+ V + R+ R T + V H ++ R D + + G+++ +GT ++L+
Sbjct: 180 IAHQVDVLALVHRLSQERGLTVIAVLHDINMAARYCDYLVALRGGEMIAQGTPAELMRGE 239
|
Length = 265 |
| >gnl|CDD|213223 cd03256, ABC_PhnC_transporter, ATP-binding cassette domain of the binding protein-dependent phosphonate transport system | Back alignment and domain information |
|---|
Score = 79.9 bits (198), Expect = 2e-16
Identities = 35/91 (38%), Positives = 58/91 (63%), Gaps = 5/91 (5%)
Query: 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHI 1102
IE+ ++S YP+ + +D++L I G+ VAL+G SG+GKST++ L +P +G +
Sbjct: 1 IEVENLSKTYPN--GKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSV 58
Query: 1103 TLDGVEIQKLQLKWLRQ---QMGLVSQEPVL 1130
+DG +I KL+ K LRQ Q+G++ Q+ L
Sbjct: 59 LIDGTDINKLKGKALRQLRRQIGMIFQQFNL 89
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 241 |
| >gnl|CDD|213198 cd03231, ABC_CcmA_heme_exporter, Cytochrome c biogenesis ATP-binding export protein | Back alignment and domain information |
|---|
Score = 79.1 bits (195), Expect = 2e-16
Identities = 49/171 (28%), Positives = 82/171 (47%), Gaps = 11/171 (6%)
Query: 395 ARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQ 454
R +FSG S ++++G + G +GSGK+T++ ++ P AG VL++G L +
Sbjct: 9 ERDGRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQR 68
Query: 455 LQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDT 514
R + L + T S+ +N+ + D + E++ A F D P
Sbjct: 69 DSIARGLLYLGHAPGIKTTLSVLENLRFWHADHSDEQVEEALARVGLNGFED-RPVA--- 124
Query: 515 LVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEAL 565
QLS GQ++R+A+AR +L + +LDE T+ALD EA+
Sbjct: 125 -------QLSAGQQRRVALARLLLSGRPLWILDEPTTALDKAGVARFAEAM 168
|
CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperon that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. Length = 201 |
| >gnl|CDD|213184 cd03217, ABC_FeS_Assembly, ABC-type transport system involved in Fe-S cluster assembly, ATPase component | Back alignment and domain information |
|---|
Score = 78.7 bits (195), Expect = 2e-16
Identities = 55/209 (26%), Positives = 94/209 (44%), Gaps = 41/209 (19%)
Query: 400 QIFSGFSISISSGTTAALVGQSGSGKSTVISLIERF--YDPQAGEVLIDGINLKEFQLQW 457
+I G +++I G AL+G +GSGKST+ I Y+ GE+L G ++ + +
Sbjct: 14 EILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEE 73
Query: 458 I-RKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLV 516
R I L Q P G ++ A L V
Sbjct: 74 RARLGIFLAFQYPPEIPG-----------------VKNADFLRY---------------V 101
Query: 517 GEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTV 575
E SGG+K+R I + +L +P + +LDE S LD ++ ++V E ++++ ++ +
Sbjct: 102 NE---GFSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREEGKSVL 158
Query: 576 IVAH--RLSTVRNADMIAVIHRGKIVEKG 602
I+ H RL D + V++ G+IV+ G
Sbjct: 159 IITHYQRLLDYIKPDRVHVLYDGRIVKSG 187
|
Biosynthesis of iron-sulfur clusters (Fe-S) depends on multi-protein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. Length = 200 |
| >gnl|CDD|185037 PRK15079, PRK15079, oligopeptide ABC transporter ATP-binding protein OppF; Provisional | Back alignment and domain information |
|---|
Score = 81.7 bits (202), Expect = 2e-16
Identities = 66/229 (28%), Positives = 115/229 (50%), Gaps = 23/229 (10%)
Query: 404 GFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINL-KEFQLQW--IRK 460
G ++ + G T +VG+SG GKST I GEV G +L +W +R
Sbjct: 39 GVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLLGMKDDEWRAVRS 98
Query: 461 KIGLVSQEPVLFTG---SIKDNIA-----YGKDDATTEEIRVATELANAAKFIDKLPQGI 512
I ++ Q+P+ +I + IA Y + +E++ + + LP
Sbjct: 99 DIQMIFQDPLASLNPRMTIGEIIAEPLRTY-HPKLSRQEVK--DRVKAMMLKVGLLPN-- 153
Query: 513 DTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESE-KVVQ--EALDRIM 569
L+ + + SGGQ QRI IARA++ +P++++ DE SALD + +VV + L R M
Sbjct: 154 --LINRYPHEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREM 211
Query: 570 VNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVEDPEGAYSQ 617
+ + +AH L+ V++ +D + V++ G VE GT+ ++ +P Y++
Sbjct: 212 -GLSLIFIAHDLAVVKHISDRVLVMYLGHAVELGTYDEVYHNPLHPYTK 259
|
Length = 331 |
| >gnl|CDD|213262 cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cassette domain of the osmoprotectant transporter | Back alignment and domain information |
|---|
Score = 79.3 bits (196), Expect = 3e-16
Identities = 35/99 (35%), Positives = 60/99 (60%), Gaps = 3/99 (3%)
Query: 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHI 1102
IE +V+ +Y + +LNL+I G+ + L+G SGSGK+T + ++ R +P +G I
Sbjct: 1 IEFENVTKRYGGGK--KAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEI 58
Query: 1103 TLDGVEIQKLQLKWLRQQMGLVSQEPVLF-NDTIRANIA 1140
+DG +I++ LR+++G V Q+ LF + T+ NIA
Sbjct: 59 FIDGEDIREQDPVELRRKIGYVIQQIGLFPHMTVEENIA 97
|
OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 242 |
| >gnl|CDD|224052 COG1127, Ttg2A, ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 79.9 bits (198), Expect = 3e-16
Identities = 34/103 (33%), Positives = 62/103 (60%), Gaps = 7/103 (6%)
Query: 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHI 1102
IE+ V+ + R + ++L + G+ +A++G SGSGKST++ L+ PD G I
Sbjct: 9 IEVRGVTKSFGDR---VILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEI 65
Query: 1103 TLDGVEIQKL---QLKWLRQQMGLVSQEPVLFND-TIRANIAY 1141
+DG +I +L +L +R++MG++ Q+ LF+ T+ N+A+
Sbjct: 66 LIDGEDIPQLSEEELYEIRKRMGVLFQQGALFSSLTVFENVAF 108
|
Length = 263 |
| >gnl|CDD|188098 TIGR00957, MRP_assoc_pro, multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Score = 84.2 bits (208), Expect = 3e-16
Identities = 41/130 (31%), Positives = 74/130 (56%), Gaps = 5/130 (3%)
Query: 1040 KGEIELHHVSFKYPSRPDVQ-VFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPD 1098
+G +E + +Y R D+ V R +N+ I G+ V +VG +G+GKS++ L R +
Sbjct: 1282 RGRVEFRNYCLRY--REDLDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESA 1339
Query: 1099 AGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEM 1158
G I +DG+ I K+ L LR ++ ++ Q+PVLF+ ++R N+ ++ E+ A E+
Sbjct: 1340 EGEIIIDGLNIAKIGLHDLRFKITIIPQDPVLFSGSLRMNL--DPFSQYSDEEVWWALEL 1397
Query: 1159 ANAHKFICSL 1168
A+ F+ +L
Sbjct: 1398 AHLKTFVSAL 1407
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved [Transport and binding proteins, Other]. Length = 1522 |
| >gnl|CDD|236554 PRK09536, btuD, corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 82.2 bits (203), Expect = 3e-16
Identities = 56/232 (24%), Positives = 108/232 (46%), Gaps = 27/232 (11%)
Query: 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 443
I++ D+ + + G +S+ G+ LVG +G+GK+T++ I P AG V
Sbjct: 4 IDVSDLSVEFGDTT---VLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTV 60
Query: 444 LIDGINLKEFQLQWIRKKIGLVSQEPVL-FTGSIKDNIAYGK----------DDATTEEI 492
L+ G +++ + +++ V Q+ L F ++ + G+ + +
Sbjct: 61 LVAGDDVEALSARAASRRVASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAV 120
Query: 493 RVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSA 552
A E A+F D + + +L SGG++QR+ +ARA+ + +LLLDE T++
Sbjct: 121 ERAMERTGVAQFAD---RPVTSL--------SGGERQRVLLARALAQATPVLLLDEPTAS 169
Query: 553 LDAESEKVVQEALDRIMVNRTTVIVA-HRLS-TVRNADMIAVIHRGKIVEKG 602
LD + E + R++ + T + A H L R D + ++ G++ G
Sbjct: 170 LDINHQVRTLELVRRLVDDGKTAVAAIHDLDLAARYCDELVLLADGRVRAAG 221
|
Length = 402 |
| >gnl|CDD|227019 COG4674, COG4674, Uncharacterized ABC-type transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 79.7 bits (197), Expect = 3e-16
Identities = 67/226 (29%), Positives = 111/226 (49%), Gaps = 19/226 (8%)
Query: 402 FSGF------SISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGI----NLK 451
F GF S S+ G L+G +G+GK+T++ +I PQ GEVL DG L
Sbjct: 15 FGGFKALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLP 74
Query: 452 EFQLQWIRKKIGLVSQEPVLFTG-SIKDN--IAYGKDDATTEEIRVATELANAAKFIDKL 508
E ++ R IG Q+P +F ++++N +A +D + + + + L
Sbjct: 75 EHRI--ARAGIGRKFQKPTVFENLTVRENLELALNRDKSVFASLFARLRAEERRRIDELL 132
Query: 509 PQ-GIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSAL-DAESEKVVQEALD 566
G+ LS GQKQ + I + +DP++LLLDE + + DAE+EK E L
Sbjct: 133 ATIGLGDERDRLAALLSHGQKQWLEIGMLLAQDPKLLLLDEPVAGMTDAETEKTA-ELLK 191
Query: 567 RIMVNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVEDP 611
+ + ++V H + VR AD + V+H G ++ +G+ ++ DP
Sbjct: 192 SLAGKHSILVVEHDMGFVREIADKVTVLHEGSVLAEGSLDEVQNDP 237
|
Length = 249 |
| >gnl|CDD|213226 cd03259, ABC_Carb_Solutes_like, ATP-binding cassette domain of the carbohydrate and solute transporters-like | Back alignment and domain information |
|---|
Score = 78.3 bits (194), Expect = 4e-16
Identities = 38/120 (31%), Positives = 64/120 (53%), Gaps = 8/120 (6%)
Query: 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHI 1102
+EL +S Y S V+ DL+L + G+ +AL+G SG GK+T++ L+ PD+G I
Sbjct: 1 LELKGLSKTYGS---VRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEI 57
Query: 1103 TLDGVEIQKLQLKWLRQQMGLVSQEPVLF-NDTIRANIAYG--KGGDATEAEIQAASEMA 1159
+DG ++ + + R+ +G+V Q+ LF + T+ NIA+G G E+
Sbjct: 58 LIDGRDVTGVPPE--RRNIGMVFQDYALFPHLTVAENIAFGLKLRGVPKAEIRARVRELL 115
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 213 |
| >gnl|CDD|188317 TIGR03415, ABC_choXWV_ATP, choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 81.7 bits (202), Expect = 4e-16
Identities = 66/228 (28%), Positives = 111/228 (48%), Gaps = 29/228 (12%)
Query: 406 SISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLI-------DGINLKEFQLQWI 458
S+ I G L+G SGSGKST++ + G VL+ D N L+ +
Sbjct: 44 SLDIEEGEICVLMGLSGSGKSTLLRAVNGLNPVSRGSVLVKDGDGSVDVANCDAATLRRL 103
Query: 459 R-KKIGLVSQEPVLFTG-SIKDNIAYG------KDDATTEEIRVATELANAAKFIDKLPQ 510
R ++ +V Q+ L ++++N+A+G + + EL A++ D+ P
Sbjct: 104 RTHRVSMVFQQFALLPWRTVEENVAFGLEMQGMPKAERRKRVDEQLELVGLAQWADRKP- 162
Query: 511 GIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIM- 569
GE LSGG +QR+ +ARA + ILL+DE SALD +Q+ L +
Sbjct: 163 ------GE----LSGGMQQRVGLARAFATEAPILLMDEPFSALDPLIRTQLQDELLELQS 212
Query: 570 -VNRTTVIVAHRL-STVRNADMIAVIHRGKIVEKGTHSKLVEDPEGAY 615
+ +T V V+H L ++ + IA++ G+I++ GT ++V +P Y
Sbjct: 213 KLKKTIVFVSHDLDEALKIGNRIAIMEGGRIIQHGTPEEIVLNPANDY 260
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines [Transport and binding proteins, Amino acids, peptides and amines]. Length = 382 |
| >gnl|CDD|237452 PRK13632, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 79.3 bits (196), Expect = 5e-16
Identities = 35/102 (34%), Positives = 63/102 (61%), Gaps = 3/102 (2%)
Query: 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHI 1102
I++ +VSF YP+ + ++++ +I G+ VA++G +GSGKST+ +L P +G I
Sbjct: 8 IKVENVSFSYPNS-ENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEI 66
Query: 1103 TLDGVEIQKLQLKWLRQQMGLVSQEP--VLFNDTIRANIAYG 1142
+DG+ I K LK +R+++G++ Q P T+ +IA+G
Sbjct: 67 KIDGITISKENLKEIRKKIGIIFQNPDNQFIGATVEDDIAFG 108
|
Length = 271 |
| >gnl|CDD|213229 cd03262, ABC_HisP_GlnQ, ATP-binding cassette domain of the histidine and glutamine transporters | Back alignment and domain information |
|---|
Score = 78.0 bits (193), Expect = 5e-16
Identities = 37/116 (31%), Positives = 65/116 (56%), Gaps = 10/116 (8%)
Query: 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHI 1102
IE+ ++ + V + ++L ++ G+ V ++G SGSGKST++ + +PD+G I
Sbjct: 1 IEIKNLHKSFGDF---HVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTI 57
Query: 1103 TLDGVEI--QKLQLKWLRQQMGLVSQEPVLF-NDTIRANIAYG----KGGDATEAE 1151
+DG+++ K + LRQ++G+V Q+ LF + T+ NI KG EAE
Sbjct: 58 IIDGLKLTDDKKNINELRQKVGMVFQQFNLFPHLTVLENITLAPIKVKGMSKAEAE 113
|
HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, respectively. Histidine permease is a multi-subunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryotic extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQMP system of S. typhimurium, where HisJ is the extracellular solute binding proteins and HisP is the ABC protein. Length = 213 |
| >gnl|CDD|182893 PRK11000, PRK11000, maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 80.8 bits (200), Expect = 5e-16
Identities = 68/235 (28%), Positives = 112/235 (47%), Gaps = 36/235 (15%)
Query: 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGE 442
+ LR+V +Y + I ++ I G VG SG GKST++ +I D +G+
Sbjct: 3 SVTLRNVTKAYG---DVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGD 59
Query: 443 VLIDGINLKEFQLQWIRKKIGLVSQEPVLFTG-SIKDNIAYGKDDATTE--EI--RV--A 495
+ I + + + + +G+V Q L+ S+ +N+++G A + EI RV
Sbjct: 60 LFIGEKRMND--VPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEEINQRVNQV 117
Query: 496 TELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDA 555
E+ A +D+ P+ LSGGQ+QR+AI R ++ +P + LLDE S LDA
Sbjct: 118 AEVLQLAHLLDRKPKA-----------LSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDA 166
Query: 556 ESEKVVQEALDRIMV-------NRTTVIVAH-RLSTVRNADMIAVIHRGKIVEKG 602
VQ RI + RT + V H ++ + AD I V+ G++ + G
Sbjct: 167 ALR--VQM---RIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVG 216
|
Length = 369 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 82.3 bits (204), Expect = 6e-16
Identities = 53/189 (28%), Positives = 86/189 (45%), Gaps = 33/189 (17%)
Query: 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 443
+E +V Y + S I G A+VG +G+GKST++ L+ P +G V
Sbjct: 322 LEFENVSKGYD--GGRLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTV 379
Query: 444 LIDGINLKEFQLQWIRKKIGLVSQE--PVLFTGSIKDNIAYGKDDATTEEIRVATELANA 501
+ G +K IG Q + ++ + ++ G D +E+R A
Sbjct: 380 KV-GETVK----------IGYFDQHRDELDPDKTVLEELSEGFPDGDEQEVR-----AYL 423
Query: 502 AKFIDKLPQGIDTLVGEHGTQ----LSGGQKQRIAIARAILKDPRILLLDEATSALDAES 557
+F GE + LSGG+K R+ +A+ +L+ P +LLLDE T+ LD ES
Sbjct: 424 GRFG---------FTGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIES 474
Query: 558 EKVVQEALD 566
+ ++EAL
Sbjct: 475 LEALEEALL 483
|
Length = 530 |
| >gnl|CDD|182336 PRK10253, PRK10253, iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 78.9 bits (194), Expect = 6e-16
Identities = 64/227 (28%), Positives = 109/227 (48%), Gaps = 43/227 (18%)
Query: 405 FSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGL 464
++ I G A++G +G GKST++ + R P G V +DG +++ + + + ++IGL
Sbjct: 26 LTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVARRIGL 85
Query: 465 VSQEPVLFTGSI--KDNIAYGK--------------DDATTEEIRVA--TELANAAKFID 506
++Q G I ++ +A G+ ++A T+ ++ T LA+
Sbjct: 86 LAQNATT-PGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLAD------ 138
Query: 507 KLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALD 566
Q +DT LSGGQ+QR IA + ++ I+LLDE T+ LD + + E L
Sbjct: 139 ---QSVDT--------LSGGQRQRAWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLS 187
Query: 567 RIMVNR----TTVIVAHRLS-TVRNADMIAVIHRGKIVEKGTHSKLV 608
+ NR T V H L+ R A + + GKIV +G ++V
Sbjct: 188 EL--NREKGYTLAAVLHDLNQACRYASHLIALREGKIVAQGAPKEIV 232
|
Length = 265 |
| >gnl|CDD|224047 COG1122, CbiO, ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 78.1 bits (193), Expect = 7e-16
Identities = 38/103 (36%), Positives = 61/103 (59%), Gaps = 5/103 (4%)
Query: 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHI 1102
IE ++SF+YP +D++L+I G+ V L+G +GSGKST++ LL P +G +
Sbjct: 4 IEAENLSFRYP--GRKAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEV 61
Query: 1103 TLDGVEIQKLQLKW-LRQQMGLVSQEPV--LFNDTIRANIAYG 1142
+DG++ + LRQ++GLV Q P LF T+ +A+G
Sbjct: 62 LVDGLDTSSEKSLLELRQKVGLVFQNPDDQLFGPTVEDEVAFG 104
|
Length = 235 |
| >gnl|CDD|226361 COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 79.6 bits (197), Expect = 1e-15
Identities = 38/123 (30%), Positives = 65/123 (52%), Gaps = 9/123 (7%)
Query: 1040 KGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDA 1099
K +E+ +VS + D D++L I+ G+ V L+G SG GK+T++ ++ F P +
Sbjct: 3 KPALEIRNVSKSFG---DFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSS 59
Query: 1100 GHITLDGVEIQKLQLKWLRQQMGLVSQEPVLF-NDTIRANIAYGK--GGDATEAEI-QAA 1155
G I LDG +I + + ++ +G+V Q LF + T+ N+A+G +AEI
Sbjct: 60 GEILLDGEDITDVPPE--KRPIGMVFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARV 117
Query: 1156 SEM 1158
E
Sbjct: 118 EEA 120
|
Length = 352 |
| >gnl|CDD|226164 COG3638, COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 78.1 bits (193), Expect = 1e-15
Identities = 36/94 (38%), Positives = 58/94 (61%), Gaps = 5/94 (5%)
Query: 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHI 1102
IE+ ++S YP Q +D+NL+I G+ VA++G SG+GKST++ L DP +G I
Sbjct: 4 IEVKNLSKTYPG--GHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEI 61
Query: 1103 TLDGVEIQKL---QLKWLRQQMGLVSQEPVLFND 1133
+GV+I KL +L+ LR+ +G++ Q+ L
Sbjct: 62 LFNGVQITKLKGKELRKLRRDIGMIFQQFNLVPR 95
|
Length = 258 |
| >gnl|CDD|130355 TIGR01288, nodI, ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Score = 78.8 bits (194), Expect = 1e-15
Identities = 72/272 (26%), Positives = 135/272 (49%), Gaps = 26/272 (9%)
Query: 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 443
I+L V SY ++ + + S +I+ G L+G +G+GKST+ ++ P G++
Sbjct: 5 IDLVGVSKSYG---DKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKI 61
Query: 444 LIDGINLKEFQLQWIRKKIGLVSQEPVL---FTGSIKDNI-AYGKD-DATTEEIR-VATE 497
+ G + + + R IG+V Q L FT +++N+ +G+ +T EI V
Sbjct: 62 TVLGEPVPS-RARLARVAIGVVPQFDNLDPEFT--VRENLLVFGRYFGMSTREIEAVIPS 118
Query: 498 LANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAES 557
L A+ K D V LSGG K+R+ +ARA++ DP++L+LDE T+ LD +
Sbjct: 119 LLEFARLESK----ADVRV----ALLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHA 170
Query: 558 EKVVQEALDRIMV-NRTTVIVAHRLSTV-RNADMIAVIHRGKIVEKGTHSKLVEDPEGAY 615
++ E L ++ +T ++ H + R D + V+ G+ + +G L+++ G
Sbjct: 171 RHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLESGRKIAEGRPHALIDEQIGC- 229
Query: 616 SQLIRLQEANKESEQTIDG--QRKSEISMESL 645
+I + + + + + R+ E+S E+L
Sbjct: 230 -NVIEIYGGDPDELRELIRPYARRIEVSGETL 260
|
This protein is required for normal nodulation by nitrogen-fixing root nodule bacteria such as Mesorhizobium loti. It is a member of the family of ABC transporter ATP binding proteins and works with NodJ to export a nodulation signal molecule. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans [Cellular processes, Other, Transport and binding proteins, Other]. Length = 303 |
| >gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Score = 81.0 bits (200), Expect = 1e-15
Identities = 58/220 (26%), Positives = 111/220 (50%), Gaps = 16/220 (7%)
Query: 404 GFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV-------LIDGINLKEFQLQ 456
S+ + G +VG SG+GK+T+ +I +P +GEV +D
Sbjct: 302 NVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPGPDGRG 361
Query: 457 WIRKKIGLVSQEPVLFT-GSIKDNI--AYGKDDATTEEIRVATELANAAKFIDKLPQGID 513
++ IG++ QE L+ ++ DN+ A G + A F ++ + I
Sbjct: 362 RAKRYIGILHQEYDLYPHRTVLDNLTEAIGLELPDELARMKAVITLKMVGFDEEKAEEI- 420
Query: 514 TLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEAL--DRIMVN 571
+ ++ +LS G++ R+A+A+ ++K+PRI++LDE T +D ++ V ++ R +
Sbjct: 421 --LDKYPDELSEGERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEME 478
Query: 572 RTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVED 610
+T +IV+H + V + D A++ GKIV+ G ++VE+
Sbjct: 479 QTFIIVSHDMDFVLDVCDRAALMRDGKIVKIGDPEEIVEE 518
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520 |
| >gnl|CDD|224054 COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 78.1 bits (193), Expect = 2e-15
Identities = 33/122 (27%), Positives = 65/122 (53%), Gaps = 9/122 (7%)
Query: 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHI 1102
IE+ +++ KY D ++ ++ G+ L+G +G+GK+T++ +L P +G I
Sbjct: 5 IEVRNLTKKY--GGDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEI 62
Query: 1103 TLDGVEIQKLQLKWLRQQMGLVSQEPVLFND-TIRANI-----AYGKGGDATEAEIQAAS 1156
+ G ++ K + +R+++G V QEP L+ + T+R N+ YG + E I+
Sbjct: 63 LVLGYDVVK-EPAKVRRRIGYVPQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEELL 121
Query: 1157 EM 1158
E+
Sbjct: 122 EL 123
|
Length = 293 |
| >gnl|CDD|236947 PRK11650, ugpC, glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 79.5 bits (197), Expect = 2e-15
Identities = 55/181 (30%), Positives = 93/181 (51%), Gaps = 26/181 (14%)
Query: 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 443
++L+ V SY Q+ G + ++ G LVG SG GKST++ ++ +GE+
Sbjct: 4 LKLQAVRKSYDG--KTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEI 61
Query: 444 LIDG--INLKEFQLQWIRKKIGLVSQEPVLFTG-SIKDNIAYGKDDATTEEIRVATELAN 500
I G +N +L+ + I +V Q L+ S+++N+AYG + + +A
Sbjct: 62 WIGGRVVN----ELEPADRDIAMVFQNYALYPHMSVRENMAYGLKIRGMPKAEIEERVAE 117
Query: 501 AAK------FIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALD 554
AA+ +D+ P+ +LSGGQ+QR+A+ RAI+++P + L DE S LD
Sbjct: 118 AARILELEPLLDRKPR-----------ELSGGQRQRVAMGRAIVREPAVFLFDEPLSNLD 166
Query: 555 A 555
A
Sbjct: 167 A 167
|
Length = 356 |
| >gnl|CDD|184210 PRK13651, PRK13651, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 77.8 bits (192), Expect = 2e-15
Identities = 68/262 (25%), Positives = 115/262 (43%), Gaps = 49/262 (18%)
Query: 384 IELRDVYFSYPAR-PNE-QIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAG 441
I+++++ + + P E + S+ I+ G A++GQ+GSGK+T I + P G
Sbjct: 3 IKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTG 62
Query: 442 EVLI----DGINLKEFQLQW--------------------IRKKIGLVSQ--EPVLFTGS 475
+ + K + + IR+++G+V Q E LF +
Sbjct: 63 TIEWIFKDEKNKKKTKEKEKVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQT 122
Query: 476 IKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVG--EHGTQ-----LSGGQK 528
I+ +I +G + + AAK+I+ LVG E Q LSGGQK
Sbjct: 123 IEKDIIFG---PVSMGVSKEEAKKRAAKYIE--------LVGLDESYLQRSPFELSGGQK 171
Query: 529 QRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVN-RTTVIVAHRLSTV-RN 586
+R+A+A + +P L+ DE T+ LD + K + E D + +T ++V H L V
Sbjct: 172 RRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLDNVLEW 231
Query: 587 ADMIAVIHRGKIVEKG-THSKL 607
GKI++ G T+ L
Sbjct: 232 TKRTIFFKDGKIIKDGDTYDIL 253
|
Length = 305 |
| >gnl|CDD|235150 PRK03695, PRK03695, vitamin B12-transporter ATPase; Provisional | Back alignment and domain information |
|---|
Score = 76.5 bits (189), Expect = 3e-15
Identities = 62/216 (28%), Positives = 105/216 (48%), Gaps = 31/216 (14%)
Query: 405 FSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQL-QWIRKKIG 463
S + +G LVG +G+GKST+++ + P +G + G L+ + + R +
Sbjct: 15 LSAEVRAGEILHLVGPNGAGKSTLLARMAGLL-PGSGSIQFAGQPLEAWSAAELARHRAY 73
Query: 464 LVSQEPVLFTGSIKDNIA-YGKDDATTEEIRVA-TELANAAKFIDKLPQGIDTLVGEHGT 521
L Q+ F + + + D TE + A E+A A DKL + +
Sbjct: 74 LSQQQTPPFAMPVFQYLTLHQPDKTRTEAVASALNEVAEALGLDDKLGRSV--------N 125
Query: 522 QLSGGQKQRIAIARAILK-DPRI------LLLDEATSALDAESEKVVQE-ALDRIMV--- 570
QLSGG+ QR+ +A +L+ P I LLLDE ++LD V Q+ ALDR++
Sbjct: 126 QLSGGEWQRVRLAAVVLQVWPDINPAGQLLLLDEPMNSLD-----VAQQAALDRLLSELC 180
Query: 571 --NRTTVIVAHRLS-TVRNADMIAVIHRGKIVEKGT 603
V+ +H L+ T+R+AD + ++ +GK++ G
Sbjct: 181 QQGIAVVMSSHDLNHTLRHADRVWLLKQGKLLASGR 216
|
Length = 248 |
| >gnl|CDD|224051 COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 76.0 bits (188), Expect = 4e-15
Identities = 38/118 (32%), Positives = 67/118 (56%), Gaps = 9/118 (7%)
Query: 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHI 1102
IE+ ++S + D +V + ++L + G+ V ++G SGSGKST++ L +PD+G I
Sbjct: 3 IEIKNLSKSFG---DKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSI 59
Query: 1103 TLDGVEI-QKLQLKWLRQQMGLVSQEPVLF-NDTIRANIAYG----KGGDATEAEIQA 1154
T+DG ++ K + LR+++G+V Q+ LF + T+ N+ K EA +A
Sbjct: 60 TVDGEDVGDKKDILKLRRKVGMVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREKA 117
|
Length = 240 |
| >gnl|CDD|131721 TIGR02673, FtsE, cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Score = 75.4 bits (186), Expect = 4e-15
Identities = 43/131 (32%), Positives = 68/131 (51%), Gaps = 12/131 (9%)
Query: 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHI 1102
IE H+VS YP V D++L IR G+ + L G SG+GK+T++ LL P G +
Sbjct: 2 IEFHNVSKAYP--GGVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQV 59
Query: 1103 TLDGVEIQKL---QLKWLRQQMGLVSQE-PVLFNDTIRANIAY-----GKGGDATEAEIQ 1153
+ G ++ +L QL LR+++G+V Q+ +L + T+ N+A GK + +
Sbjct: 60 RIAGEDVNRLRGRQLPLLRRRIGVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRRVG 119
Query: 1154 AASEMAN-AHK 1163
AA HK
Sbjct: 120 AALRQVGLEHK 130
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein [Cellular processes, Cell division]. Length = 214 |
| >gnl|CDD|213190 cd03223, ABCD_peroxisomal_ALDP, ATP-binding cassette domain of peroxisomal transporter, subfamily D | Back alignment and domain information |
|---|
Score = 74.1 bits (183), Expect = 4e-15
Identities = 53/210 (25%), Positives = 80/210 (38%), Gaps = 76/210 (36%)
Query: 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLI--------ERF 435
IEL ++ + P + S I G + G SG+GKS++ + R
Sbjct: 1 IELENLSLATPD--GRVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRI 58
Query: 436 YDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVA 495
P+ ++L + Q P L G++++ + Y DD
Sbjct: 59 GMPEGEDLL-------------------FLPQRPYLPLGTLREQLIYPWDDV-------- 91
Query: 496 TELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDA 555
LSGG++QR+A AR +L P+ + LDEATSALD
Sbjct: 92 ---------------------------LSGGEQQRLAFARLLLHKPKFVFLDEATSALDE 124
Query: 556 ESEK----VVQEALDRIMVNRTTVI-VAHR 580
ESE +++E TVI V HR
Sbjct: 125 ESEDRLYQLLKELG-------ITVISVGHR 147
|
Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asymptomatic). Length = 166 |
| >gnl|CDD|224041 COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 76.1 bits (188), Expect = 5e-15
Identities = 36/118 (30%), Positives = 55/118 (46%), Gaps = 12/118 (10%)
Query: 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHI 1102
+E+ VS + V D+NL + G+ VA++G SG GKST++ L+ P +G +
Sbjct: 4 LEIEGVSKSFGGVE---VLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEV 60
Query: 1103 TLDGVEIQKLQLKWLRQQMGLVSQEPVLFN-DTIRANIAYG---KGGDATEAEIQAAS 1156
LDG + +G V QE L T+ N+A G +G EA +A
Sbjct: 61 LLDGRPVTG-----PGPDIGYVFQEDALLPWLTVLDNVALGLELRGKSKAEARERAKE 113
|
Length = 248 |
| >gnl|CDD|236688 PRK10418, nikD, nickel transporter ATP-binding protein NikD; Provisional | Back alignment and domain information |
|---|
Score = 75.9 bits (187), Expect = 5e-15
Identities = 70/227 (30%), Positives = 108/227 (47%), Gaps = 33/227 (14%)
Query: 393 YPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDP----QAGEVLIDGI 448
A+P + G S+++ G ALVG SGSGKS + AG VL+DG
Sbjct: 13 QAAQP---LVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGK 69
Query: 449 NLKEFQLQWIRKKIGLVSQEP--------VLFTGSIKDNIAYGK--DDATTEEIRVATEL 498
+ L+ +KI + Q P + T + + +A GK DDAT A L
Sbjct: 70 PVAPCALR--GRKIATIMQNPRSAFNPLHTMHTHARETCLALGKPADDATLTAALEAVGL 127
Query: 499 ANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESE 558
NAA+ + P ++SGG QR+ IA A+L + ++ DE T+ LD ++
Sbjct: 128 ENAARVLKLYP-----------FEMSGGMLQRMMIALALLCEAPFIIADEPTTDLDVVAQ 176
Query: 559 KVVQEALDRIMVNRT--TVIVAHRLSTV-RNADMIAVIHRGKIVEKG 602
+ + L+ I+ R ++V H + V R AD +AV+ G+IVE+G
Sbjct: 177 ARILDLLESIVQKRALGMLLVTHDMGVVARLADDVAVMSHGRIVEQG 223
|
Length = 254 |
| >gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Score = 78.9 bits (195), Expect = 5e-15
Identities = 70/248 (28%), Positives = 112/248 (45%), Gaps = 50/248 (20%)
Query: 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 443
+ R + Y + G ++ +G AL+G +G+GKST++ +I P +G +
Sbjct: 12 LCARSISKQYSGVE---VLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTL 68
Query: 444 LIDGINL------KEFQLQWIRKKIGLVSQEPVLFTG-SIKDNIAYGKDDATTEEIRVAT 496
I G K QL I LV QEP+LF S+K+NI +G
Sbjct: 69 EIGGNPCARLTPAKAHQL-----GIYLVPQEPLLFPNLSVKENILFG------------- 110
Query: 497 ELANAAKFIDKLPQGIDTLVGEHGTQLS---------GGQKQRIAIARAILKDPRILLLD 547
L + K+ Q L+ G QL +Q + I R +++D RIL+LD
Sbjct: 111 -LPKRQASMQKMKQ----LLAALGCQLDLDSSAGSLEVADRQIVEILRGLMRDSRILILD 165
Query: 548 EATSALD-AESEKV---VQEALDRIMVNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKG 602
E T++L AE+E++ ++E L + V ++H+L +R AD I+V+ G I G
Sbjct: 166 EPTASLTPAETERLFSRIRELLAQ---GVGIVFISHKLPEIRQLADRISVMRDGTIALSG 222
Query: 603 THSKLVED 610
+ L D
Sbjct: 223 KTADLSTD 230
|
Length = 510 |
| >gnl|CDD|237420 PRK13537, PRK13537, nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Score = 76.8 bits (189), Expect = 5e-15
Identities = 66/236 (27%), Positives = 115/236 (48%), Gaps = 26/236 (11%)
Query: 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 443
I+ R+V Y + + G S + G L+G +G+GK+T + ++ P AG +
Sbjct: 8 IDFRNVEKRYGDK---LVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSI 64
Query: 444 LIDGINLKEFQLQWIRKKIGLVSQEPVL---FTGSIKDNIA-----YGKDDATTEEIRVA 495
+ G + + + R+++G+V Q L FT +++N+ +G A V
Sbjct: 65 SLCGEPVPS-RARHARQRVGVVPQFDNLDPDFT--VRENLLVFGRYFGLSAAAARA-LVP 120
Query: 496 TELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDA 555
L A KL D VGE LSGG K+R+ +ARA++ DP +L+LDE T+ LD
Sbjct: 121 PLLEFA-----KLENKADAKVGE----LSGGMKRRLTLARALVNDPDVLVLDEPTTGLDP 171
Query: 556 ESEKVVQEALDRIMVN-RTTVIVAHRLSTV-RNADMIAVIHRGKIVEKGTHSKLVE 609
++ ++ E L ++ +T ++ H + R D + VI G+ + +G L+E
Sbjct: 172 QARHLMWERLRSLLARGKTILLTTHFMEEAERLCDRLCVIEEGRKIAEGAPHALIE 227
|
Length = 306 |
| >gnl|CDD|234199 TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Score = 75.3 bits (186), Expect = 6e-15
Identities = 60/223 (26%), Positives = 103/223 (46%), Gaps = 26/223 (11%)
Query: 400 QIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQW-I 458
I G S+ + G ++G++G GK+T++ + ++G + +DG ++ +
Sbjct: 14 HILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERA 73
Query: 459 RKKIGLVSQEPVLFTG-SIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTL-- 515
R I V Q +F ++++N+ G LA + K+P I L
Sbjct: 74 RAGIAYVPQGREIFPRLTVEENLLTG--------------LAALPRRSRKIPDEIYELFP 119
Query: 516 -----VGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRI-- 568
+G G LSGGQ+Q++AIARA++ P++LLLDE T + K + + R+
Sbjct: 120 VLKEMLGRRGGDLSGGQQQQLAIARALVTRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRA 179
Query: 569 MVNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVED 610
++V L R AD V+ RG++V G +L ED
Sbjct: 180 EGGMAILLVEQYLDFARELADRYYVMERGRVVASGAGDELDED 222
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 230 |
| >gnl|CDD|213225 cd03258, ABC_MetN_methionine_transporter, ATP-binding cassette domain of methionine transporter | Back alignment and domain information |
|---|
Score = 75.3 bits (186), Expect = 7e-15
Identities = 29/104 (27%), Positives = 57/104 (54%), Gaps = 5/104 (4%)
Query: 1043 IELHHVSFKYPSRP-DVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGH 1101
IEL +VS + V +D++L + G+ ++G SG+GKST++ + P +G
Sbjct: 2 IELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGS 61
Query: 1102 ITLDGVEIQKL---QLKWLRQQMGLVSQEPVLFND-TIRANIAY 1141
+ +DG ++ L +L+ R+++G++ Q L + T+ N+A
Sbjct: 62 VLVDGTDLTLLSGKELRKARRRIGMIFQHFNLLSSRTVFENVAL 105
|
MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 233 |
| >gnl|CDD|227118 COG4778, PhnL, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 75.2 bits (185), Expect = 7e-15
Identities = 53/189 (28%), Positives = 84/189 (44%), Gaps = 41/189 (21%)
Query: 401 IFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLI-------DGINLKEF 453
+ S+S+++G L G SGSGKST++ + Y P G++L+ D + +
Sbjct: 26 VLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQILVRHEGEWVDLVTAEPR 85
Query: 454 QLQWIRKK-IGLVSQ---------------EPVLFTGSIKDNIAYGKDDATTEEIRVATE 497
++ +R+ IG VSQ EP+L G + +A K + +
Sbjct: 86 EVLEVRRTTIGYVSQFLRVIPRVSALDVVAEPLLARG-VPREVARAKAADLLTRLNLPER 144
Query: 498 LANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAES 557
L + A SGG++QR+ IAR + D ILLLDE T++LDA +
Sbjct: 145 LWSLAP-----------------ATFSGGEQQRVNIARGFIVDYPILLLDEPTASLDATN 187
Query: 558 EKVVQEALD 566
VV E +
Sbjct: 188 RAVVVELIR 196
|
Length = 235 |
| >gnl|CDD|225438 COG2884, FtsE, Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Score = 74.6 bits (184), Expect = 8e-15
Identities = 35/103 (33%), Positives = 58/103 (56%), Gaps = 6/103 (5%)
Query: 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHI 1102
I +VS YP + RD++ I G+ V L G SG+GKST++ L+ P G I
Sbjct: 2 IRFENVSKAYPGGR--EALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKI 59
Query: 1103 TLDGVEIQKL---QLKWLRQQMGLVSQEPVLFND-TIRANIAY 1141
++G ++ +L ++ +LR+Q+G+V Q+ L D T+ N+A
Sbjct: 60 LVNGHDLSRLKGREIPFLRRQIGVVFQDFRLLPDRTVYENVAL 102
|
Length = 223 |
| >gnl|CDD|213201 cd03234, ABCG_White, White pigment protein homolog of ABCG transporter subfamily | Back alignment and domain information |
|---|
Score = 74.6 bits (184), Expect = 8e-15
Identities = 59/222 (26%), Positives = 98/222 (44%), Gaps = 33/222 (14%)
Query: 399 EQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQA---GEVLIDGINLKEFQL 455
+I + S+ + SG A++G SGSGK+T++ I + G++L +G K Q
Sbjct: 20 ARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPDQF 79
Query: 456 QWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEE-IRVATELANAAKFIDKLPQGIDT 514
Q K + V Q+ +L G T E + L K D + +
Sbjct: 80 Q---KCVAYVRQDDILLPG------------LTVRETLTYTAILRLPRKSSDAIRKKRVE 124
Query: 515 LVGEHG-----------TQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQE 563
V +SGG+++R++IA +L DP++L+LDE TS LD+ + +
Sbjct: 125 DVLLRDLALTRIGGNLVKGISGGERRRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVS 184
Query: 564 ALDRIMV-NRTTVIVAH--RLSTVRNADMIAVIHRGKIVEKG 602
L ++ NR ++ H R R D I ++ G+IV G
Sbjct: 185 TLSQLARRNRIVILTIHQPRSDLFRLFDRILLLSSGEIVYSG 226
|
The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners. Length = 226 |
| >gnl|CDD|130256 TIGR01188, drrA, daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 76.3 bits (188), Expect = 8e-15
Identities = 54/212 (25%), Positives = 100/212 (47%), Gaps = 27/212 (12%)
Query: 404 GFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIG 463
G + + G +G +G+GK+T I ++ P +G + G ++ + + +R+ IG
Sbjct: 11 GVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVR-EPRKVRRSIG 69
Query: 464 LVSQEPVLFTG-SIKDNIA-----YG--KD--DATTEEIRVATELANAAKFIDKLPQGID 513
+V Q + + ++N+ YG KD + EE+ EL AA D
Sbjct: 70 IVPQYASVDEDLTGRENLEMMGRLYGLPKDEAEERAEELLELFELGEAA----------D 119
Query: 514 TLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRT 573
VG SGG ++R+ IA +++ P +L LDE T+ LD + + + + + +
Sbjct: 120 RPVG----TYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDYIRALKEEGV 175
Query: 574 TVIV-AHRLSTVRN-ADMIAVIHRGKIVEKGT 603
T+++ H + D IA+I G+I+ +GT
Sbjct: 176 TILLTTHYMEEADKLCDRIAIIDHGRIIAEGT 207
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc [Transport and binding proteins, Other]. Length = 302 |
| >gnl|CDD|224042 COG1117, PstB, ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 74.9 bits (185), Expect = 1e-14
Identities = 39/114 (34%), Positives = 57/114 (50%), Gaps = 10/114 (8%)
Query: 1036 LEDVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFY 1095
IE+ ++ Y D +D+NL I K AL+G SG GKST++ L R
Sbjct: 1 ETMKIPAIEVRDLNLYYG---DKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMN 57
Query: 1096 DPD-----AGHITLDGVEI--QKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYG 1142
D G + LDG I K+ + LR+++G+V Q+P F +I N+AYG
Sbjct: 58 DLIPGARVEGEVLLDGKNIYDPKVDVVELRRRVGMVFQKPNPFPMSIYDNVAYG 111
|
Length = 253 |
| >gnl|CDD|131368 TIGR02315, ABC_phnC, phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 75.0 bits (185), Expect = 1e-14
Identities = 32/88 (36%), Positives = 58/88 (65%), Gaps = 5/88 (5%)
Query: 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHI 1102
+E+ ++S YP+ Q +++NL I G+ VA++G SG+GKST++ + R +P +G I
Sbjct: 2 LEVENLSKVYPN--GKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSI 59
Query: 1103 TLDGVEIQKLQ---LKWLRQQMGLVSQE 1127
L+G +I KL+ L+ LR+++G++ Q
Sbjct: 60 LLEGTDITKLRGKKLRKLRRRIGMIFQH 87
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates [Transport and binding proteins, Anions]. Length = 243 |
| >gnl|CDD|234200 TIGR03411, urea_trans_UrtD, urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Score = 74.1 bits (183), Expect = 2e-14
Identities = 67/230 (29%), Positives = 115/230 (50%), Gaps = 28/230 (12%)
Query: 402 FSGF------SISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDG---INLKE 452
F GF S+ + G ++G +G+GK+T++ +I P G VL G L E
Sbjct: 12 FDGFKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPE 71
Query: 453 FQLQWIRKKIGLVSQEPVLFTG-SIKDN--IAYGKDDA--TTEEIRVATELAN----AAK 503
Q+ R IG Q+P +F ++ +N +A +D + + R++ E + +
Sbjct: 72 HQI--ARAGIGRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLE 129
Query: 504 FIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSAL-DAESEKVVQ 562
I + D L G LS GQKQ + I +++DP++LLLDE + + D E+EK
Sbjct: 130 TIGLADE-ADRLAGL----LSHGQKQWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTA- 183
Query: 563 EALDRIMVNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVEDP 611
E L + + V+V H + VR+ AD + V+H+G ++ +G+ ++ DP
Sbjct: 184 ELLKSLAGKHSVVVVEHDMEFVRSIADKVTVLHQGSVLAEGSLDQVQADP 233
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 242 |
| >gnl|CDD|233207 TIGR00955, 3a01204, The Eye Pigment Precursor Transporter (EPP) Family protein | Back alignment and domain information |
|---|
Score = 77.8 bits (192), Expect = 2e-14
Identities = 57/224 (25%), Positives = 98/224 (43%), Gaps = 42/224 (18%)
Query: 411 SGTTAALVGQSGSGKSTVISLIERFYDPQ----AGEVLIDG--INLKEFQLQWIRKKIGL 464
G A++G SG+GK+T+++ + F P+ +G VL++G I+ KE +R
Sbjct: 50 PGELLAVMGSSGAGKTTLMNALA-FRSPKGVKGSGSVLLNGMPIDAKE-----MRAISAY 103
Query: 465 VSQEPVLFTGSI--------------KDNIAYGKDDATTEEIRVATELANAAKFIDKLPQ 510
V Q+ LF ++ + + +E+ A L A
Sbjct: 104 VQQDD-LFIPTLTVREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCA-------- 154
Query: 511 GIDTLVGEHGTQ--LSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRI 568
+T +G G LSGG+++R+A A +L DP +L DE TS LD+ V + L +
Sbjct: 155 --NTRIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDEPTSGLDSFMAYSVVQVLKGL 212
Query: 569 MVNRTTVIVA-HRLST--VRNADMIAVIHRGKIVEKGTHSKLVE 609
T+I H+ S+ D I ++ G++ G+ + V
Sbjct: 213 AQKGKTIICTIHQPSSELFELFDKIILMAEGRVAYLGSPDQAVP 256
|
[Transport and binding proteins, Other]. Length = 617 |
| >gnl|CDD|224059 COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 72.9 bits (180), Expect = 3e-14
Identities = 40/106 (37%), Positives = 61/106 (57%), Gaps = 12/106 (11%)
Query: 1043 IELHHVSFKYPSRP-DVQVFRDLNLKIRAGKTVALVGESGSGKST---VVSLLQRFYDPD 1098
IEL +VS Y V+ +D+NL+I AG+ VA+VG SGSGKST ++ L + P
Sbjct: 2 IELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDK---PT 58
Query: 1099 AGHITLDGVEIQKLQLKWL----RQQMGLVSQEPVLFND-TIRANI 1139
+G + ++G ++ KL K L R+++G V Q L D T+ N+
Sbjct: 59 SGEVLINGKDLTKLSEKELAKLRRKKIGFVFQNFNLLPDLTVLENV 104
|
Length = 226 |
| >gnl|CDD|213187 cd03220, ABC_KpsT_Wzt, ATP-binding cassette component of polysaccharide transport system | Back alignment and domain information |
|---|
Score = 73.3 bits (181), Expect = 3e-14
Identities = 62/215 (28%), Positives = 96/215 (44%), Gaps = 38/215 (17%)
Query: 400 QIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIR 459
S + G L+G++G+GKST++ L+ Y P +G V + G ++ +
Sbjct: 36 WALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRG------RVSSL- 88
Query: 460 KKIGL-VSQEPVLFTGSIKDNIA-----YGKD----DATTEEIRVATELANAAKFIDKLP 509
+GL P L TG ++NI G D +EI +EL FID LP
Sbjct: 89 --LGLGGGFNPEL-TG--RENIYLNGRLLGLSRKEIDEKIDEIIEFSELG---DFID-LP 139
Query: 510 QGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAE-SEKVVQEALDRI 568
V S G K R+A A A +P ILL+DE + DA EK + + +
Sbjct: 140 ------VKT----YSSGMKARLAFAIATALEPDILLIDEVLAVGDAAFQEKCQRRLRELL 189
Query: 569 MVNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKG 602
+T ++V+H S+++ D V+ +GKI G
Sbjct: 190 KQGKTVILVSHDPSSIKRLCDRALVLEKGKIRFDG 224
|
The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenza) and a cytoplasmic membrane protein MPA2. Length = 224 |
| >gnl|CDD|188099 TIGR00972, 3a0107s01c2, phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 73.1 bits (180), Expect = 4e-14
Identities = 36/107 (33%), Positives = 60/107 (56%), Gaps = 10/107 (9%)
Query: 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYD-----P 1097
IE+ +++ Y + + +++NL I + AL+G SG GKST++ L R D
Sbjct: 2 IEIENLNLFYG---EKEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVR 58
Query: 1098 DAGHITLDGVEI--QKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYG 1142
G + DG +I +K+ + LR+++G+V Q+P F +I NIAYG
Sbjct: 59 IEGKVLFDGQDIYDKKIDVVELRRRVGMVFQKPNPFPMSIYDNIAYG 105
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters [Transport and binding proteins, Anions]. Length = 247 |
| >gnl|CDD|224043 COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 75.1 bits (185), Expect = 4e-14
Identities = 39/118 (33%), Positives = 68/118 (57%), Gaps = 8/118 (6%)
Query: 1042 EIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGH 1101
I +++V ++ + D++L I++G+ VAL+G SG+GKST++ ++ PDAG
Sbjct: 2 SIRINNVKKRFGAFG---ALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGR 58
Query: 1102 ITLDGVEIQKLQLKWLRQ-QMGLVSQEPVLF-NDTIRANIAYG---KGGDATEAEIQA 1154
I L+G + + +R ++G V Q LF + T+ NIA+G + +EAEI+A
Sbjct: 59 IRLNGRVLFDVSNLAVRDRKVGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRA 116
|
Length = 345 |
| >gnl|CDD|226622 COG4138, BtuD, ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 73.0 bits (179), Expect = 4e-14
Identities = 57/214 (26%), Positives = 101/214 (47%), Gaps = 33/214 (15%)
Query: 405 FSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWI-RKKIG 463
S + +G LVG +G+GKST+++ + +G + G L+ + + R +
Sbjct: 18 LSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGSGSIQFAGQPLEAWSATELARHRAY 76
Query: 464 LVSQEPVLFTGSIKDNIA-YGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQ 522
L Q+ F + + + D TE + ++A A DKL + + Q
Sbjct: 77 LSQQQTPPFAMPVWHYLTLHQPDKTRTELL---NDVAGALALDDKLGRSTN--------Q 125
Query: 523 LSGGQKQRIAIARAILK-------DPRILLLDEATSALDAESEKVVQE-ALDRIMVN--- 571
LSGG+ QR+ +A +L+ ++LLLDE ++LD V Q+ ALDR++
Sbjct: 126 LSGGEWQRVRLAAVVLQITPDANPAGQLLLLDEPMNSLD-----VAQQSALDRLLSALCQ 180
Query: 572 --RTTVIVAHRLS-TVRNADMIAVIHRGKIVEKG 602
V+ +H L+ T+R+A ++ RGK++ G
Sbjct: 181 QGLAIVMSSHDLNHTLRHAHRAWLLKRGKLLASG 214
|
Length = 248 |
| >gnl|CDD|224049 COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 73.1 bits (180), Expect = 5e-14
Identities = 28/88 (31%), Positives = 47/88 (53%), Gaps = 2/88 (2%)
Query: 1043 IELHHVSFKYPSRPDV-QVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGH 1101
+ + ++S Y +++L+I G+T+ +VGESGSGKST+ LL P +G
Sbjct: 4 LSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGS 63
Query: 1102 ITLDGVEIQKLQ-LKWLRQQMGLVSQEP 1128
I LDG + + K + + +V Q+P
Sbjct: 64 ILLDGKPLAPKKRAKAFYRPVQMVFQDP 91
|
Length = 252 |
| >gnl|CDD|130262 TIGR01194, cyc_pep_trnsptr, cyclic peptide transporter | Back alignment and domain information |
|---|
Score = 76.1 bits (187), Expect = 5e-14
Identities = 67/243 (27%), Positives = 106/243 (43%), Gaps = 15/243 (6%)
Query: 365 PEIDAYDTKGKILDDIR---GDIELRDVYFSYPARPNEQIFS--GFSISISSGTTAALVG 419
PE++ D +L IEL+DV+ + A + F+ + I+ G +VG
Sbjct: 316 PELELSDADNVLLLAHDKSVDSIELKDVHMNPKAPEGSEGFALGPIDLRIAQGDIVFIVG 375
Query: 420 QSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDN 479
++G GKST+ L Y PQ GE+L+DG + R + + LF I
Sbjct: 376 ENGCGKSTLAKLFCGLYIPQEGEILLDGAAVSADSRDDYRDLFSAIFADFHLFDDLI--- 432
Query: 480 IAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILK 539
G D+ + A + + DK+ I+ T LS GQ++R+A+ A L+
Sbjct: 433 ---GPDEGEHASLDNAQQYLQRLEIADKV--KIEDGGFSTTTALSTGQQKRLALICAWLE 487
Query: 540 DPRILLLDEATSALDAESEKVVQEAL--DRIMVNRTTVIVAHRLSTVRNADMIAVIHRGK 597
D ILL DE + D ++ E L D +T +I++H AD I + G
Sbjct: 488 DRPILLFDEWAADQDPAFKRFFYEELLPDLKRQGKTIIIISHDDQYFELADQIIKLAAGC 547
Query: 598 IVE 600
IV+
Sbjct: 548 IVK 550
|
This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake [Transport and binding proteins, Amino acids, peptides and amines, Transport and binding proteins, Other]. Length = 555 |
| >gnl|CDD|213182 cd03215, ABC_Carb_Monos_II, Second domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 71.3 bits (176), Expect = 5e-14
Identities = 42/207 (20%), Positives = 82/207 (39%), Gaps = 50/207 (24%)
Query: 402 FSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQ-LQWIRK 460
S + +G + G G+G++ + + P +GE+ +DG + IR
Sbjct: 16 VRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDAIRA 75
Query: 461 KIGLVSQEP----VLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLV 516
I V ++ ++ S+ +NIA L
Sbjct: 76 GIAYVPEDRKREGLVLDLSVAENIA--------------------------LSS------ 103
Query: 517 GEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVI 576
LSGG +Q++ +AR + +DPR+L+LDE T +D ++ + + + V+
Sbjct: 104 -----LLSGGNQQKVVLARWLARDPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVL 158
Query: 577 VAHRLST-----VRNADMIAVIHRGKI 598
+ +S+ + D I V++ G+I
Sbjct: 159 L---ISSELDELLGLCDRILVMYEGRI 182
|
This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 182 |
| >gnl|CDD|213204 cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-binding cassette domain 2 of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 72.8 bits (179), Expect = 6e-14
Identities = 44/183 (24%), Positives = 82/183 (44%), Gaps = 27/183 (14%)
Query: 404 GFSISISSGT-----TAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWI 458
F++ + G+ ++G +G GK+T I ++ P G++ I+ + ++ Q+I
Sbjct: 12 EFTLEVEGGSISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDTV-SYKPQYI 70
Query: 459 RKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGE 518
+ + G+++D + TE+A P I+ ++
Sbjct: 71 KAD----------YEGTVRD-LLSSITKDFYTHPYFKTEIAK--------PLQIEQILDR 111
Query: 519 HGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVN--RTTVI 576
+LSGG+ QR+AIA + KD I LLDE ++ LD E + + + R N +T +
Sbjct: 112 EVPELSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMASKVIRRFAENNEKTAFV 171
Query: 577 VAH 579
V H
Sbjct: 172 VEH 174
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 246 |
| >gnl|CDD|226617 COG4133, CcmA, ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 71.6 bits (176), Expect = 8e-14
Identities = 55/236 (23%), Positives = 92/236 (38%), Gaps = 54/236 (22%)
Query: 396 RPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQ- 454
R +FS S ++++G + G +G+GK+T++ ++ P AGEV G ++ +
Sbjct: 12 RGERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQNVRE 71
Query: 455 -----LQWIRKKIGLVSQ----EPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFI 505
L ++ + G+ ++ E + F I A A
Sbjct: 72 SYHQALLYLGHQPGIKTELTALENLHFWQRFHG-------SGNAATIWEALAQVGLAGLE 124
Query: 506 DKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEAL 565
D LP G QLS GQ++R+A+AR L + +LDE +ALD E ++
Sbjct: 125 D-LPVG----------QLSAGQQRRVALARLWLSPAPLWILDEPFTALDKEGVALL---- 169
Query: 566 DRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVEDPEGAYSQLIRL 621
T ++ AH +G IV TH L A + + L
Sbjct: 170 -------TALMAAH-------------AAQGGIVLLTTHQPLPIAS--AQIRRLDL 203
|
Length = 209 |
| >gnl|CDD|185067 PRK15112, PRK15112, antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Score = 72.5 bits (178), Expect = 9e-14
Identities = 57/220 (25%), Positives = 117/220 (53%), Gaps = 25/220 (11%)
Query: 406 SISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLV 465
S ++ G T A++G++GSGKST+ ++ +P +GE+LID L + ++I ++
Sbjct: 33 SFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDYSYRSQRIRMI 92
Query: 466 SQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAK---FIDKLPQGIDTLVGEHGT- 521
Q+P + S+ + +R+ T+L + I+ L Q L+ +H +
Sbjct: 93 FQDP---STSLNPRQRISQ--ILDFPLRLNTDLEPEQREKQIIETLRQV--GLLPDHASY 145
Query: 522 ---QLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNR------ 572
L+ GQKQR+ +ARA++ P++++ DEA ++LD ++ L +M+
Sbjct: 146 YPHMLAPGQKQRLGLARALILRPKVIIADEALASLDMS----MRSQLINLMLELQEKQGI 201
Query: 573 TTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVEDP 611
+ + V L +++ +D + V+H+G++VE+G+ + ++ P
Sbjct: 202 SYIYVTQHLGMMKHISDQVLVMHQGEVVERGSTADVLASP 241
|
Length = 267 |
| >gnl|CDD|183244 PRK11629, lolD, lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 71.8 bits (176), Expect = 9e-14
Identities = 58/191 (30%), Positives = 95/191 (49%), Gaps = 26/191 (13%)
Query: 406 SISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEF----QLQWIRKK 461
S SI G A+VG SGSGKST++ L+ P +G+V+ +G + + + + +K
Sbjct: 29 SFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAELRNQK 88
Query: 462 IGLVSQEPVL---FTGSIKDNIAY-----GKDDATTEEIRVATELANAAKFIDKLPQGID 513
+G + Q L FT +N+A K A A E+ A G++
Sbjct: 89 LGFIYQFHHLLPDFTAL--ENVAMPLLIGKKKPAEINS--RALEMLAAV--------GLE 136
Query: 514 TLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRT 573
++LSGG++QR+AIARA++ +PR++L DE T LDA + + + L + +
Sbjct: 137 HRANHRPSELSGGERQRVAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQG 196
Query: 574 T--VIVAHRLS 582
T ++V H L
Sbjct: 197 TAFLVVTHDLQ 207
|
Length = 233 |
| >gnl|CDD|226359 COG3839, MalK, ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 73.4 bits (181), Expect = 1e-13
Identities = 33/123 (26%), Positives = 65/123 (52%), Gaps = 11/123 (8%)
Query: 1042 EIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGH 1101
E+EL +V + +V +D+NL I G+ V L+G SG GKST++ ++ +P +G
Sbjct: 3 ELELKNVRKSFG---SFEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGE 59
Query: 1102 ITLDGVEIQKLQLKWLRQQMGLVSQEPVLF-NDTIRANIAYG-----KGGDATEAEIQAA 1155
I +DG ++ L + ++ + +V Q L+ + T+ NIA+G + ++
Sbjct: 60 ILIDGRDVTDLPPE--KRGIAMVFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEV 117
Query: 1156 SEM 1158
+++
Sbjct: 118 AKL 120
|
Length = 338 |
| >gnl|CDD|233305 TIGR01189, ccmA, heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Score = 70.5 bits (173), Expect = 1e-13
Identities = 54/229 (23%), Positives = 93/229 (40%), Gaps = 41/229 (17%)
Query: 395 ARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQ 454
+R +F G S ++++G + G +G GK+T++ ++ P +GEV +G L E +
Sbjct: 9 SRGERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQR 68
Query: 455 LQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRV--ATELANAAKFIDKLPQGI 512
+ R + L + S +N+ + + + A F D LP
Sbjct: 69 DEPHRNILYLGHLPGLKPELSALENLHFWAAIHGGAQRTIEDALAAVGLTGFED-LPAA- 126
Query: 513 DTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNR 572
QLS GQ++R+A+AR L + +LDE T+ALD + +
Sbjct: 127 ---------QLSAGQQRRLALARLWLSRAPLWILDEPTTALDK-------AGVALLA--- 167
Query: 573 TTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVEDPEGAYSQLIRL 621
++ AH + RG IV TH L ++ +RL
Sbjct: 168 -GLLRAH-------------LARGGIVLLTTHQDLGLVE----ARELRL 198
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Other]. Length = 198 |
| >gnl|CDD|226952 COG4586, COG4586, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 73.2 bits (180), Expect = 1e-13
Identities = 50/215 (23%), Positives = 95/215 (44%), Gaps = 21/215 (9%)
Query: 406 SISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLV 465
S I G +G +G+GKST + ++ P +G+V ++G + + +++R IGLV
Sbjct: 44 SFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNGKDPFRRREEYLRS-IGLV 102
Query: 466 SQEPVLFTGSIKDNIAYGKDDATTEEIRVATELAN--AAKFIDKLPQ-----GIDTLVGE 518
+ D + + V + +F ++L ++ +
Sbjct: 103 MGQ---KLQLWWDL-------PALDSLEVLKLIYEIPDDEFAERLDFLTEILDLEGFLKW 152
Query: 519 HGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIV- 577
+LS GQ+ R +A A+L P++L LDE T LD ++ ++E L R ++
Sbjct: 153 PVRKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQANIREFLKEYNEERQATVLL 212
Query: 578 -AHRLSTV-RNADMIAVIHRGKIVEKGTHSKLVED 610
H + D + +I +G++V GT ++L E
Sbjct: 213 TTHIFDDIATLCDRVLLIDQGQLVFDGTLAQLQEQ 247
|
Length = 325 |
| >gnl|CDD|215595 PLN03130, PLN03130, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 75.2 bits (185), Expect = 2e-13
Identities = 40/123 (32%), Positives = 70/123 (56%), Gaps = 11/123 (8%)
Query: 1026 IDPSDESGTILEDVK--------GEIELHHVSFKYPSRPDVQ-VFRDLNLKIRAGKTVAL 1076
ID E+ ++E+ + G I+ V +Y RP++ V L+ +I + V +
Sbjct: 1213 IDLPSEAPLVIENNRPPPGWPSSGSIKFEDVVLRY--RPELPPVLHGLSFEISPSEKVGI 1270
Query: 1077 VGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIR 1136
VG +G+GKS++++ L R + + G I +DG +I K L LR+ +G++ Q PVLF+ T+R
Sbjct: 1271 VGRTGAGKSSMLNALFRIVELERGRILIDGCDISKFGLMDLRKVLGIIPQAPVLFSGTVR 1330
Query: 1137 ANI 1139
N+
Sbjct: 1331 FNL 1333
|
Length = 1622 |
| >gnl|CDD|237455 PRK13637, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 71.6 bits (176), Expect = 2e-13
Identities = 35/84 (41%), Positives = 57/84 (67%), Gaps = 4/84 (4%)
Query: 1063 DLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEI--QKLQLKWLRQQ 1120
++N++I G+ V L+G +GSGKST++ L P +G I +DGV+I +K++L +R++
Sbjct: 25 NVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDIRKK 84
Query: 1121 MGLVSQEP--VLFNDTIRANIAYG 1142
+GLV Q P LF +TI +IA+G
Sbjct: 85 VGLVFQYPEYQLFEETIEKDIAFG 108
|
Length = 287 |
| >gnl|CDD|226968 COG4615, PvdE, ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 74.5 bits (183), Expect = 2e-13
Identities = 60/222 (27%), Positives = 104/222 (46%), Gaps = 21/222 (9%)
Query: 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 443
+ELR+V F+Y N +++I G L+G +GSGKST+ L+ Y PQ+GE+
Sbjct: 323 LELRNVRFAYQ--DNAFHVGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQPQSGEI 380
Query: 444 LIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAK 503
L+DG + QL+ RK V + LF + G + + + K
Sbjct: 381 LLDGKPVSAEQLEDYRKLFSAVFSDYHLFDQLL------GPEGKASPQ--------LIEK 426
Query: 504 FIDKLPQGIDTLVGEHG---TQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKV 560
++ +L T + + +LS GQK+R+A+ A+L++ IL+LDE + D +
Sbjct: 427 WLQRLELAHKTSLNDGRFSNLKLSTGQKKRLALLLALLEERDILVLDEWAADQDPAFRRE 486
Query: 561 V-QEALDRIMVNRTTVI-VAHRLSTVRNADMIAVIHRGKIVE 600
Q L + T+ ++H +AD + + G++ E
Sbjct: 487 FYQVLLPLLKEQGKTIFAISHDDHYFIHADRLLEMRNGQLSE 528
|
Length = 546 |
| >gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Score = 75.4 bits (185), Expect = 2e-13
Identities = 53/202 (26%), Positives = 102/202 (50%), Gaps = 10/202 (4%)
Query: 405 FSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGL 464
+I+ A +G +G+GK+T +S++ P +G VL+ G ++ E L +R+ +G+
Sbjct: 949 LNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDI-ETNLDAVRQSLGM 1007
Query: 465 VSQEPVLFTG-SIKDNIA-YGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQ 522
Q +LF ++ ++I Y + + E +L A D G+ E
Sbjct: 1008 CPQHNILFHHLTVAEHILFYAQLKGRSWE---EAQLEMEAMLEDT---GLHHKRNEEAQD 1061
Query: 523 LSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLS 582
LSGG ++++++A A + D ++++LDE TS +D S + + + L + RT ++ H +
Sbjct: 1062 LSGGMQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKYRSGRTIIMSTHHMD 1121
Query: 583 TVRN-ADMIAVIHRGKIVEKGT 603
D IA+I +G++ GT
Sbjct: 1122 EADLLGDRIAIISQGRLYCSGT 1143
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272 |
| >gnl|CDD|224057 COG1134, TagH, ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 71.1 bits (175), Expect = 2e-13
Identities = 59/232 (25%), Positives = 97/232 (41%), Gaps = 38/232 (16%)
Query: 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 443
L+ + S I G ++G +G+GKST++ LI Y P +G+V
Sbjct: 25 KRLKGLAKGGRKVAEFWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKV 84
Query: 444 LIDGINLKEFQLQWIRKKIGL-VSQEPVLFTGSIKDNI---------AYGKDDATTEEIR 493
+ G ++ + I L +P L TG ++NI + D +EI
Sbjct: 85 KVTG------KVAPL---IELGAGFDPEL-TG--RENIYLRGLILGLTRKEIDEKVDEI- 131
Query: 494 VATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSAL 553
E A FID+ + S G R+A + A +P ILLLDE +
Sbjct: 132 --IEFAELGDFIDQPVKTY-----------SSGMYARLAFSVATHVEPDILLLDEVLAVG 178
Query: 554 DAE-SEKVVQEALDRIMVNRTTVIVAHRLSTVRNA-DMIAVIHRGKIVEKGT 603
DA EK ++ + + N+T V+V+H L ++ D + G+I +G+
Sbjct: 179 DAAFQEKCLERLNELVEKNKTIVLVSHDLGAIKQYCDRAIWLEHGQIRMEGS 230
|
Length = 249 |
| >gnl|CDD|213222 cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein | Back alignment and domain information |
|---|
Score = 69.8 bits (172), Expect = 3e-13
Identities = 40/107 (37%), Positives = 57/107 (53%), Gaps = 12/107 (11%)
Query: 1043 IELHHVSFKYPSRPD-VQVFRDLNLKIRAGKTVALVGESGSGKST---VVSLLQRFYDPD 1098
IEL ++S Y + VQ + ++L I G+ VA+VG SGSGKST ++ L R P
Sbjct: 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDR---PT 57
Query: 1099 AGHITLDGVEIQKLQLKWL----RQQMGLVSQEPVLFND-TIRANIA 1140
+G + +DG +I KL K L R+ +G V Q L D T N+
Sbjct: 58 SGEVRVDGTDISKLSEKELAAFRRRHIGFVFQSFNLLPDLTALENVE 104
|
This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. Length = 218 |
| >gnl|CDD|182569 PRK10584, PRK10584, putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Score = 70.2 bits (172), Expect = 3e-13
Identities = 59/194 (30%), Positives = 94/194 (48%), Gaps = 28/194 (14%)
Query: 401 IFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINL----KEFQLQ 456
I +G + + G T AL+G+SGSGKST+++++ D +GEV + G L +E + +
Sbjct: 25 ILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAK 84
Query: 457 WIRKKIGLVSQEPVLF-TGSIKDNIAY-----GKDDATTEEIRVAT-ELANAAKFIDKLP 509
K +G V Q +L T + +N+ G+ + A E K +D LP
Sbjct: 85 LRAKHVGFVFQSFMLIPTLNALENVELPALLRGESSRQSRNGAKALLEQLGLGKRLDHLP 144
Query: 510 QGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIM 569
QLSGG++QR+A+ARA P +L DE T LD ++ + + L
Sbjct: 145 -----------AQLSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIADLL--FS 191
Query: 570 VNR----TTVIVAH 579
+NR T ++V H
Sbjct: 192 LNREHGTTLILVTH 205
|
Length = 228 |
| >gnl|CDD|213255 cd03288, ABCC_SUR2, ATP-binding cassette domain 2 of the sulfonylurea receptor SUR | Back alignment and domain information |
|---|
Score = 70.3 bits (172), Expect = 4e-13
Identities = 38/113 (33%), Positives = 66/113 (58%), Gaps = 5/113 (4%)
Query: 1029 SDESGTILEDVKGEIELHHVSFKYPS--RPDVQVFRDLNLKIRAGKTVALVGESGSGKST 1086
S S + L + GEI++H + +Y + +P V + + I+ G+ V + G +GSGKS+
Sbjct: 6 SGSSNSGLVGLGGEIKIHDLCVRYENNLKP---VLKHVKAYIKPGQKVGICGRTGSGKSS 62
Query: 1087 VVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANI 1139
+ R D G I +DG++I KL L LR ++ ++ Q+P+LF+ +IR N+
Sbjct: 63 LSLAFFRMVDIFDGKIVIDGIDISKLPLHTLRSRLSIILQDPILFSGSIRFNL 115
|
The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 257 |
| >gnl|CDD|130041 TIGR00968, 3a0106s01, sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 70.2 bits (172), Expect = 4e-13
Identities = 33/87 (37%), Positives = 52/87 (59%), Gaps = 3/87 (3%)
Query: 1057 DVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKW 1116
Q D+NL++ G VAL+G SGSGKST++ ++ PD+G I L+G + ++ +
Sbjct: 12 SFQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHAR- 70
Query: 1117 LRQQMGLVSQEPVLFND-TIRANIAYG 1142
+++G V Q LF T+R NIA+G
Sbjct: 71 -DRKIGFVFQHYALFKHLTVRDNIAFG 96
|
[Transport and binding proteins, Anions]. Length = 237 |
| >gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 73.0 bits (180), Expect = 4e-13
Identities = 61/207 (29%), Positives = 103/207 (49%), Gaps = 22/207 (10%)
Query: 404 GFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQA---GEVLIDGINLKEFQLQWIR- 459
S+ + +G +L G++G+GKST++ ++ Y P GE++ +G +E Q IR
Sbjct: 23 NVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVY-PHGTYEGEIIFEG---EELQASNIRD 78
Query: 460 ---KKIGLVSQEPVLFTG-SIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGID-- 513
I ++ QE L S+ +NI G + + A K + +L I+
Sbjct: 79 TERAGIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDINPA 138
Query: 514 TLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNR- 572
T VG G GQ+Q + IA+A+ K R+L+LDE T++L ESE V + R +
Sbjct: 139 TPVGNLG----LGQQQLVEIAKALNKQARLLILDEPTASL-TESETAVLLDIIRDLKAHG 193
Query: 573 -TTVIVAHRLSTVRN-ADMIAVIHRGK 597
+ ++H+L+ V+ +D I VI G+
Sbjct: 194 IACIYISHKLNEVKAISDTICVIRDGR 220
|
Length = 506 |
| >gnl|CDD|233665 TIGR01978, sufC, FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Score = 70.0 bits (172), Expect = 4e-13
Identities = 59/220 (26%), Positives = 97/220 (44%), Gaps = 25/220 (11%)
Query: 401 IFSGFSISISSGTTAALVGQSGSGKSTVISLI--ERFYDPQAGEVLIDGINLKEFQLQWI 458
I G ++++ G A++G +GSGKST+ I Y+ +G +L G +L E +
Sbjct: 15 ILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDER 74
Query: 459 -RKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTL-- 515
R + L Q P G +A R L F+ L + L
Sbjct: 75 ARAGLFLAFQYPEEIPGVSNLEFLRSALNARRSA-RGEEPLD-LLDFLKLLKAKLALLGM 132
Query: 516 ----------VGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEAL 565
G SGG+K+R I + L +P++ +LDE S LD ++ K+V E +
Sbjct: 133 DEEFLNRSVNEG-----FSGGEKKRNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGI 187
Query: 566 DRIMV-NRTTVIVAH--RLSTVRNADMIAVIHRGKIVEKG 602
+R+ +R+ +I+ H RL D + V+ G+IV+ G
Sbjct: 188 NRLREPDRSFLIITHYQRLLNYIKPDYVHVLLDGRIVKSG 227
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PMID:12554644) or associated with the membrane (PMID:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 243 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 72.6 bits (179), Expect = 6e-13
Identities = 41/173 (23%), Positives = 68/173 (39%), Gaps = 35/173 (20%)
Query: 966 YAGARLVEDGKATFSDVFKVFFSLTMTAIGISQSSSFSSDSNKAKSAAASIFAIIDRESK 1025
Y G +VE G ++ + + AA
Sbjct: 229 YKG-EIVETGPT--EEILS----------------NPQHPYTRGLLAAVPRLGDEKIIRL 269
Query: 1026 IDPSDESGTILEDVKGEIELHHVSFKYPSRPD--------VQVFRDLNLKIRAGKTVALV 1077
L V+ ++S +Y SR V+ D++ +R G+T+ LV
Sbjct: 270 PRRGPLRAEPLLSVR------NLSKRYGSRKGLFVRERGEVKAVDDVSFDLREGETLGLV 323
Query: 1078 GESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQ--KLQLKWLRQQMGLVSQEP 1128
GESGSGKST+ +L P +G I DG ++ +L+ LR+++ +V Q+P
Sbjct: 324 GESGSGKSTLARILAGLLPPSSGSIIFDGQDLDLTGGELRRLRRRIQMVFQDP 376
|
Length = 539 |
| >gnl|CDD|200134 TIGR01842, type_I_sec_PrtD, type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Score = 72.4 bits (178), Expect = 7e-13
Identities = 38/136 (27%), Positives = 74/136 (54%), Gaps = 4/136 (2%)
Query: 1036 LEDVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFY 1095
L + +G + + +V+ P R ++ ++AG+ +A++G SGSGKST+ L+ +
Sbjct: 310 LPEPEGHLSVENVTIVPPG-GKKPTLRGISFSLQAGEALAIIGPSGSGKSTLARLIVGIW 368
Query: 1096 DPDAGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAE-IQA 1154
P +G + LDG ++++ + + +G + Q+ LF T+ NIA + G+ + E I
Sbjct: 369 PPTSGSVRLDGADLKQWDRETFGKHIGYLPQDVELFPGTVAENIA--RFGENADPEKIIE 426
Query: 1155 ASEMANAHKFICSLQQ 1170
A+++A H+ I L
Sbjct: 427 AAKLAGVHELILRLPD 442
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 544 |
| >gnl|CDD|188394 TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Score = 69.2 bits (170), Expect = 7e-13
Identities = 38/121 (31%), Positives = 64/121 (52%), Gaps = 10/121 (8%)
Query: 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHI 1102
+E+ +SF+Y +R D++ +R G+ VAL+G +G+GKST+ SLL R Y G I
Sbjct: 2 LEVAGLSFRYGARR---ALDDVSFTVRPGRFVALLGPNGAGKSTLFSLLTRLYVAQEGQI 58
Query: 1103 TLDGVEIQKLQLKWLRQQMGLVSQEPVLFND-TIRANIAY-----GKGGDATEAEIQAAS 1156
++ G ++++ L ++G+V Q+P L D ++R N+ Y G A I
Sbjct: 59 SVAGHDLRRAPRAALA-RLGVVFQQPTLDLDLSVRQNLRYHAALHGLSRAEARARIAELL 117
Query: 1157 E 1157
Sbjct: 118 A 118
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 236 |
| >gnl|CDD|213217 cd03250, ABCC_MRP_domain1, ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C | Back alignment and domain information |
|---|
Score = 68.3 bits (168), Expect = 8e-13
Identities = 35/103 (33%), Positives = 54/103 (52%), Gaps = 15/103 (14%)
Query: 1043 IELHHVSFKYPSRPDVQVF--RDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAG 1100
I + SF + S F +D+NL++ G+ VA+VG GSGKS+++S L + +G
Sbjct: 1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSG 60
Query: 1101 HITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYGK 1143
+++ G + VSQEP + N TIR NI +GK
Sbjct: 61 SVSVPG-------------SIAYVSQEPWIQNGTIRENILFGK 90
|
This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 204 |
| >gnl|CDD|213259 cd03292, ABC_FtsE_transporter, ATP-binding cassette domain of the cell division transporter | Back alignment and domain information |
|---|
Score = 68.6 bits (168), Expect = 8e-13
Identities = 33/103 (32%), Positives = 60/103 (58%), Gaps = 6/103 (5%)
Query: 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHI 1102
IE +V+ YP +N+ I AG+ V LVG SG+GKST++ L+ + P +G I
Sbjct: 1 IEFINVTKTYP--NGTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTI 58
Query: 1103 TLDGVEIQKL---QLKWLRQQMGLVSQE-PVLFNDTIRANIAY 1141
++G ++ L + +LR+++G+V Q+ +L + + N+A+
Sbjct: 59 RVNGQDVSDLRGRAIPYLRRKIGVVFQDFRLLPDRNVYENVAF 101
|
FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. Length = 214 |
| >gnl|CDD|132561 TIGR03522, GldA_ABC_ATP, gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Score = 70.2 bits (172), Expect = 8e-13
Identities = 53/226 (23%), Positives = 97/226 (42%), Gaps = 36/226 (15%)
Query: 399 EQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWI 458
+ S G +G +G+GKST + +I + P +G V + G ++ + + +
Sbjct: 15 QNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQNPKE-V 73
Query: 459 RKKIG-----------LVSQEPVLFTGSIKDNIAYG-KDDATTEEIRVATELANAAKFID 506
++ IG + +E + F I YG K + + EL
Sbjct: 74 QRNIGYLPEHNPLYLDMYVREYLQFIAGI-----YGMKGQLLKQRVEEMIELVG------ 122
Query: 507 KLPQGIDTLVGEHG---TQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQE 563
L E QLS G +QR+ +A+A++ DP++L+LDE T+ LD ++
Sbjct: 123 --------LRPEQHKKIGQLSKGYRQRVGLAQALIHDPKVLILDEPTTGLDPNQLVEIRN 174
Query: 564 ALDRIMVNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLV 608
+ I ++T ++ H + V D + +I++GKIV +L
Sbjct: 175 VIKNIGKDKTIILSTHIMQEVEAICDRVIIINKGKIVADKKLDELS 220
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. Length = 301 |
| >gnl|CDD|188353 TIGR03608, L_ocin_972_ABC, putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Score = 68.0 bits (167), Expect = 1e-12
Identities = 33/99 (33%), Positives = 51/99 (51%), Gaps = 14/99 (14%)
Query: 1045 LHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITL 1104
L ++S K+ + + DLNL I GK A++GESGSGKST+++++ D+G + L
Sbjct: 1 LKNISKKFGDK---VILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYL 57
Query: 1105 DGVEIQKL-----------QLKWLRQQMGLVSQEPVLFN 1132
+G E L +L +L Q L+ E V N
Sbjct: 58 NGQETPPLNSKKASKFRREKLGYLFQNFALIENETVEEN 96
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins [Cellular processes, Toxin production and resistance, Transport and binding proteins, Unknown substrate]. Length = 206 |
| >gnl|CDD|226969 COG4618, ArpD, ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Score = 71.2 bits (175), Expect = 2e-12
Identities = 39/144 (27%), Positives = 76/144 (52%), Gaps = 2/144 (1%)
Query: 1027 DPSDESGTILEDVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKST 1086
P+ L +G + + ++ P + + + ++ ++AG+ + ++G SGSGKST
Sbjct: 319 LPAAAERMPLPAPQGALSVERLTAAPPGQKKP-ILKGISFALQAGEALGIIGPSGSGKST 377
Query: 1087 VVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGD 1146
+ LL + P +G + LDG ++++ + L + +G + Q+ LF+ TI NIA G +
Sbjct: 378 LARLLVGIWPPTSGSVRLDGADLRQWDREQLGRHIGYLPQDVELFDGTIAENIAR-FGEE 436
Query: 1147 ATEAEIQAASEMANAHKFICSLQQ 1170
A ++ A+ +A H+ I L Q
Sbjct: 437 ADPEKVIEAARLAGVHELILRLPQ 460
|
Length = 580 |
| >gnl|CDD|184586 PRK14240, PRK14240, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 67.8 bits (166), Expect = 2e-12
Identities = 39/110 (35%), Positives = 57/110 (51%), Gaps = 10/110 (9%)
Query: 1040 KGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYD--P 1097
G+I + + Y D Q + +NL I + AL+G SG GKST + L R D P
Sbjct: 1 MGKISVKDLDLFYG---DFQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIP 57
Query: 1098 DA---GHITLDGVEIQKLQLKW--LRQQMGLVSQEPVLFNDTIRANIAYG 1142
G + LDG +I K + LR+++G+V Q+P F +I N+AYG
Sbjct: 58 SVKIEGEVLLDGQDIYKSDIDVNQLRKRVGMVFQQPNPFPMSIYDNVAYG 107
|
Length = 250 |
| >gnl|CDD|213267 cd03300, ABC_PotA_N, ATP-binding cassette domain of the polyamine transporter | Back alignment and domain information |
|---|
Score = 68.0 bits (167), Expect = 2e-12
Identities = 41/143 (28%), Positives = 64/143 (44%), Gaps = 18/143 (12%)
Query: 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHI 1102
IEL +VS Y ++L I+ G+ L+G SG GK+T++ L+ F P +G I
Sbjct: 1 IELENVSKFYG---GFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEI 57
Query: 1103 TLDGVEIQKLQLKWLRQQMGLVSQEPVLFND-TIRANIAYG-----KGGDATEAEIQAAS 1156
LDG +I L ++ + V Q LF T+ NIA+G + + A
Sbjct: 58 LLDGKDITNLPPH--KRPVNTVFQNYALFPHLTVFENIAFGLRLKKLPKAEIKERVAEAL 115
Query: 1157 EMAN----AHKFICSL---QQVR 1172
++ A++ L QQ R
Sbjct: 116 DLVQLEGYANRKPSQLSGGQQQR 138
|
PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 232 |
| >gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 70.6 bits (174), Expect = 2e-12
Identities = 51/220 (23%), Positives = 99/220 (45%), Gaps = 36/220 (16%)
Query: 402 FSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQL----QW 457
S ++ +G + G G+G++ + + +GE+L+DG K ++
Sbjct: 275 VRDVSFTVRAGEILGIAGLVGAGRTELARALFGARPASSGEILLDG---KPVRIRSPRDA 331
Query: 458 IRKKIGLVS----QEPVLFTGSIKDNIAYGKDDATTEE--IRVATELANAAKFIDKL--- 508
I+ I V E ++ SI +NI + I E A A ++I +L
Sbjct: 332 IKAGIAYVPEDRKSEGLVLDMSIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIK 391
Query: 509 PQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALD--AESE--KVVQEA 564
+ +G LSGG +Q++ +AR + DP++L+LDE T +D A++E ++++E
Sbjct: 392 TPSPEQPIGT----LSGGNQQKVVLARWLATDPKVLILDEPTRGIDVGAKAEIYRLIREL 447
Query: 565 LDRIMVNRTTVIVAHRLST-----VRNADMIAVIHRGKIV 599
+++ +S+ + +D I V+ G+IV
Sbjct: 448 AAEGK----AILM---ISSELPELLGLSDRILVMREGRIV 480
|
Length = 500 |
| >gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Score = 71.1 bits (175), Expect = 2e-12
Identities = 81/279 (29%), Positives = 121/279 (43%), Gaps = 69/279 (24%)
Query: 392 SYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLK 451
P P ++I S+S G ++G +G+GKST++ ++ AG +D K
Sbjct: 13 VVP--PKKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIM-------AG---VD----K 56
Query: 452 EFQLQ-WIRK--KIGLVSQEPVL------------FTGSIKD--------NIAYGKDDAT 488
EF + K+G + QEP L IKD + + + DA
Sbjct: 57 EFNGEARPAPGIKVGYLPQEPQLDPTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDAD 116
Query: 489 TEEIRVATELANAAKFID---------KLPQGIDTLVGEHG----TQLSGGQKQRIAIAR 535
+ + E A + ID KL +D L T+LSGG+++R+A+ R
Sbjct: 117 MDAL--LAEQAELQEIIDAADAWDLDRKLEIAMDALRCPPWDADVTKLSGGERRRVALCR 174
Query: 536 AILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAH-R--LSTVRNADMIAV 592
+L P +LLLDE T+ LDAES +++ L T V V H R L V A I
Sbjct: 175 LLLSKPDMLLLDEPTNHLDAESVAWLEQHLQEY--PGTVVAVTHDRYFLDNV--AGWILE 230
Query: 593 IHRGK-IVEKGTHSKLVEDPEGAYSQLIRL-QEANKESE 629
+ RG+ I +G +S +E E RL QE +ES
Sbjct: 231 LDRGRGIPWEGNYSSWLEQKEK------RLEQEEKEESA 263
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. Length = 552 |
| >gnl|CDD|182906 PRK11022, dppD, dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 69.4 bits (170), Expect = 2e-12
Identities = 70/241 (29%), Positives = 109/241 (45%), Gaps = 38/241 (15%)
Query: 406 SISISSGTTAALVGQSGSGKS----TVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKK 461
S S+ G +VG+SGSGKS ++ LI+ A ++ +G +L+ + R
Sbjct: 27 SYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKERRNL 86
Query: 462 IG----LVSQEPVLFTGSIKDNIAYGKDDATTEEIRV---ATELANAAKFIDKLPQGIDT 514
+G ++ Q+P+ S+ N Y E I+V + + ID L
Sbjct: 87 VGAEVAMIFQDPMT---SL--NPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLL-----N 136
Query: 515 LVG-----------EHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQE 563
VG H QLSGG QR+ IA AI P++L+ DE T+ALD + + E
Sbjct: 137 QVGIPDPASRLDVYPH--QLSGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIE 194
Query: 564 ALDRIMV--NRTTVIVAHRLSTV-RNADMIAVIHRGKIVEKGTHSKLVEDPEGAYSQ-LI 619
L + N V++ H L+ V A I V++ G++VE G + P Y+Q L+
Sbjct: 195 LLLELQQKENMALVLITHDLALVAEAAHKIIVMYAGQVVETGKAHDIFRAPRHPYTQALL 254
Query: 620 R 620
R
Sbjct: 255 R 255
|
Length = 326 |
| >gnl|CDD|182692 PRK10744, pstB, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 68.1 bits (167), Expect = 3e-12
Identities = 36/118 (30%), Positives = 61/118 (51%), Gaps = 10/118 (8%)
Query: 1032 SGTILEDVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLL 1091
+++ +I++ +++F Y +++NL I + A +G SG GKST++
Sbjct: 3 MMSMVATAPSKIQVRNLNFYYG---KFHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTF 59
Query: 1092 QRFYD--PD---AGHITLDGVEI--QKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYG 1142
R Y+ P+ G I LDG I K + LR ++G+V Q+P F +I NIA+G
Sbjct: 60 NRMYELYPEQRAEGEILLDGENILTPKQDIALLRAKVGMVFQKPTPFPMSIYDNIAFG 117
|
Length = 260 |
| >gnl|CDD|213193 cd03226, ABC_cobalt_CbiO_domain2, Second domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 66.1 bits (162), Expect = 4e-12
Identities = 36/133 (27%), Positives = 63/133 (47%), Gaps = 14/133 (10%)
Query: 1044 ELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHIT 1103
+ ++SF Y ++ DL+L + AG+ +AL G++G+GK+T+ +L +G I
Sbjct: 1 RIENISFSYKKGTEI--LDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSIL 58
Query: 1104 LDGVEIQKLQLKWLRQQMGLVSQEP--VLFNDTIRANIAYG-KGGDATEAEIQAA----- 1155
L+G I+ K R+ +G V Q+ LF D++R + G K DA + +
Sbjct: 59 LNGKPIKA---KERRKSIGYVMQDVDYQLFTDSVREELLLGLKELDAGNEQAETVLKDLD 115
Query: 1156 -SEMANAHKFICS 1167
+ H S
Sbjct: 116 LYALKERHPLSLS 128
|
Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 205 |
| >gnl|CDD|213263 cd03296, ABC_CysA_sulfate_importer, ATP-binding cassette domain of the sulfate transporter | Back alignment and domain information |
|---|
Score = 67.4 bits (165), Expect = 4e-12
Identities = 38/119 (31%), Positives = 64/119 (53%), Gaps = 11/119 (9%)
Query: 1042 EIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGH 1101
IE+ +VS ++ + D++L I +G+ VAL+G SGSGK+T++ L+ PD+G
Sbjct: 2 SIEVRNVSKRFGDFVAL---DDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGT 58
Query: 1102 ITLDGVEIQKLQLKWLRQQMGLVSQEPVLFND-TIRANIAYG-----KGGDATEAEIQA 1154
I G + + ++ + +G V Q LF T+ N+A+G + EAEI+A
Sbjct: 59 ILFGGEDATDVPVQ--ERNVGFVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRA 115
|
Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 239 |
| >gnl|CDD|213234 cd03267, ABC_NatA_like, ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA | Back alignment and domain information |
|---|
Score = 67.0 bits (164), Expect = 4e-12
Identities = 56/214 (26%), Positives = 100/214 (46%), Gaps = 31/214 (14%)
Query: 404 GFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGI----NLKEFQLQWIR 459
G S +I G +G +G+GK+T + ++ P +GEV + G+ K+F
Sbjct: 39 GISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWKRRKKF-----L 93
Query: 460 KKIGLV-SQE-------PVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQG 511
++IG+V Q+ PV+ + + I + + +EL + + +D +
Sbjct: 94 RRIGVVFGQKTQLWWDLPVIDSFYLLAAIYDLPPARFKKRLDELSELLDLEELLDTPVR- 152
Query: 512 IDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVN 571
QLS GQ+ R IA A+L +P IL LDE T LD +++ ++ L
Sbjct: 153 ----------QLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQENIRNFLKEYNRE 202
Query: 572 R-TTVIV-AHRLSTV-RNADMIAVIHRGKIVEKG 602
R TTV++ +H + + A + VI +G+++ G
Sbjct: 203 RGTTVLLTSHYMKDIEALARRVLVIDKGRLLYDG 236
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single integral membrane protein. Length = 236 |
| >gnl|CDD|213261 cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system | Back alignment and domain information |
|---|
Score = 67.3 bits (165), Expect = 5e-12
Identities = 32/115 (27%), Positives = 59/115 (51%), Gaps = 12/115 (10%)
Query: 1062 RDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQ-- 1119
D++L +R G+ ++G SGSGKST++ + R +P +G + +DG +I + K LR+
Sbjct: 41 NDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELR 100
Query: 1120 --QMGLVSQEPVLF-NDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQV 1171
++ +V Q L + T+ N+A+G E+Q + +L+ V
Sbjct: 101 RKKISMVFQSFALLPHRTVLENVAFG-------LEVQGVPRAEREERAAEALELV 148
|
This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 269 |
| >gnl|CDD|237457 PRK13647, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 67.5 bits (165), Expect = 5e-12
Identities = 34/102 (33%), Positives = 58/102 (56%), Gaps = 4/102 (3%)
Query: 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHI 1102
IE+ + F+Y + + L+L I G AL+G +G+GKST++ L Y P G +
Sbjct: 5 IEVEDLHFRYKD--GTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRV 62
Query: 1103 TLDGVEIQKLQLKWLRQQMGLVSQEP--VLFNDTIRANIAYG 1142
+ G E+ KW+R ++GLV Q+P +F+ T+ ++A+G
Sbjct: 63 KVMGREVNAENEKWVRSKVGLVFQDPDDQVFSSTVWDDVAFG 104
|
Length = 274 |
| >gnl|CDD|226905 COG4525, TauB, ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 67.5 bits (165), Expect = 5e-12
Identities = 45/150 (30%), Positives = 70/150 (46%), Gaps = 25/150 (16%)
Query: 1047 HVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDG 1106
H+S Y +P D++L I +G+ V ++G SG GK+T+++L+ F P G I L+G
Sbjct: 8 HLSLSYEGKP-RSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNG 66
Query: 1107 VEIQKLQLKWLRQQMGLVSQEPVLFN-DTIRANIAYG---KG-GDATEAEIQAASEMAN- 1160
I+ + G+V Q L + N+A+G +G A EI A +M
Sbjct: 67 RRIEGPG-----AERGVVFQNEALLPWLNVIDNVAFGLQLRGIEKAQRREI--AHQMLAL 119
Query: 1161 ------AHKFICSL-----QQVRTSRLLLV 1179
HK+I L Q+V +R L V
Sbjct: 120 VGLEGAEHKYIWQLSGGMRQRVGIARALAV 149
|
Length = 259 |
| >gnl|CDD|181888 PRK09473, oppD, oligopeptide transporter ATP-binding component; Provisional | Back alignment and domain information |
|---|
Score = 68.2 bits (167), Expect = 5e-12
Identities = 69/255 (27%), Positives = 117/255 (45%), Gaps = 40/255 (15%)
Query: 408 SISSGTTAALVGQSGSGKS-TVISLIERFYDPQ--AGEVLIDG---INLKEFQLQWIR-K 460
S+ +G T +VG+SGSGKS T +L+ G +G +NL E +L +R +
Sbjct: 38 SLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEKELNKLRAE 97
Query: 461 KIGLVSQEPVLFTG---SIKDNIA--------YGKDDATTEEIRV--ATELANAAKFIDK 507
+I ++ Q+P+ + + + K +A E +R+ A ++ A K +
Sbjct: 98 QISMIFQDPMTSLNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRMLDAVKMPEARKRMKM 157
Query: 508 LPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDR 567
P + SGG +QR+ IA A+L P++L+ DE T+ALD + + L+
Sbjct: 158 YPH-----------EFSGGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNE 206
Query: 568 IM--VNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVEDPEGAYSQ-----LI 619
+ N +++ H L V D + V++ G+ +E G + P YS +
Sbjct: 207 LKREFNTAIIMITHDLGVVAGICDKVLVMYAGRTMEYGNARDVFYQPSHPYSIGLLNAVP 266
Query: 620 RLQEANKESEQTIDG 634
RL +A ES TI G
Sbjct: 267 RL-DAEGESLLTIPG 280
|
Length = 330 |
| >gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Score = 69.1 bits (169), Expect = 6e-12
Identities = 59/269 (21%), Positives = 110/269 (40%), Gaps = 57/269 (21%)
Query: 406 SISISSGTTAALVGQSGSGKSTVISLIERF--YDPQAGEVL------------------- 444
S +I G ++G+SG+GKS ++ ++ Y+P +G ++
Sbjct: 20 SFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYVERPSKVG 79
Query: 445 --------------IDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTE 490
+D NL + + IRK+I ++ Q YG D
Sbjct: 80 EPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFAL---------YGDDTVLDN 130
Query: 491 EIRVATELA-NAAKFIDKLPQGIDTLVGEH-----GTQLSGGQKQRIAIARAILKDPRIL 544
+ E+ + + + I+ + H LSGG+KQR+ +AR + K+P +
Sbjct: 131 VLEALEEIGYEGKEAVGRAVDLIEMVQLSHRITHIARDLSGGEKQRVVLARQLAKEPFLF 190
Query: 545 LLDEATSALDAESEKVVQEALDRIMVNR--TTVIVAHRLSTVRN-ADMIAVIHRGKIVEK 601
L DE T LD ++ K+V AL+ + + V+ +H + + +D + G+I E+
Sbjct: 191 LADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPEVIEDLSDKAIWLENGEIKEE 250
Query: 602 GTHSKLVEDPEGAYSQLIRLQEANKESEQ 630
GT ++V + + + E E E
Sbjct: 251 GTPDEVVA----VFMEGVSEVEKECEVEV 275
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520 |
| >gnl|CDD|237421 PRK13539, PRK13539, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 66.1 bits (162), Expect = 6e-12
Identities = 51/179 (28%), Positives = 78/179 (43%), Gaps = 31/179 (17%)
Query: 395 ARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQ 454
R +FSG S ++++G L G +GSGK+T++ LI P AG + +DG +
Sbjct: 11 VRGGRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGD----- 65
Query: 455 LQWIRKKIGLVSQEPVLFTGSIKDNIAY-GKDDATTEEIRVATELANAAKFIDKLPQGID 513
+P + Y G +A + VA L A F+ I
Sbjct: 66 -----------IDDPDVAE-----ACHYLGHRNAMKPALTVAENLEFWAAFLGGEELDIA 109
Query: 514 ---TLVGEHGTQ------LSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQE 563
VG LS GQK+R+A+AR ++ + I +LDE T+ALDA + + E
Sbjct: 110 AALEAVGLAPLAHLPFGYLSAGQKRRVALARLLVSNRPIWILDEPTAALDAAAVALFAE 168
|
Length = 207 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 69.1 bits (170), Expect = 7e-12
Identities = 35/123 (28%), Positives = 57/123 (46%), Gaps = 16/123 (13%)
Query: 1048 VSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKST----VVSLLQRFYDPDAGHIT 1103
V F V RD++ ++ G+ + +VGESGSGKST ++ LL +G +
Sbjct: 13 VEFATDGGR-VPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVI 71
Query: 1104 LDGVEIQKLQLKWLRQQMG----LVSQEPV-LFN------DTIRANIAYGKGGDATEAEI 1152
LDG ++ L + +R+ G ++ Q+P+ N D IR + G EA
Sbjct: 72 LDGRDLLGLSEREMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGSRAEARK 131
Query: 1153 QAA 1155
+A
Sbjct: 132 RAV 134
|
Length = 539 |
| >gnl|CDD|226967 COG4608, AppF, ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 66.9 bits (164), Expect = 7e-12
Identities = 25/93 (26%), Positives = 47/93 (50%), Gaps = 10/93 (10%)
Query: 1043 IELHHVSFKYPSR------PDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYD 1096
+E+ ++ +P V+ ++ I+ G+T+ LVGESG GKST+ L+ +
Sbjct: 5 LEVKNLKKYFPVGKGFGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEE 64
Query: 1097 PDAGHITLDGVEIQKL----QLKWLRQQMGLVS 1125
P +G I +G +I KL + + + + + V
Sbjct: 65 PTSGEILFEGKDITKLSKEERRERVLELLEKVG 97
|
Length = 268 |
| >gnl|CDD|182817 PRK10895, PRK10895, lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 66.5 bits (162), Expect = 8e-12
Identities = 57/203 (28%), Positives = 101/203 (49%), Gaps = 25/203 (12%)
Query: 406 SISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQL-QWIRKKIGL 464
S++++SG L+G +G+GK+T ++ AG ++ID ++ L R+ IG
Sbjct: 23 SLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRGIGY 82
Query: 465 VSQEPVLFTG-SIKDNIAYG---KDDATTEEIRV-ATELANAAKFIDKLPQGIDTLVGEH 519
+ QE +F S+ DN+ +DD + E+ A EL +F I+ L
Sbjct: 83 LPQEASIFRRLSVYDNLMAVLQIRDDLSAEQREDRANELM--EEF------HIEHLRDSM 134
Query: 520 GTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAES----EKVVQEALDR---IMVN- 571
G LSGG+++R+ IARA+ +P+ +LLDE + +D S +++++ D +++
Sbjct: 135 GQSLSGGERRRVEIARALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITD 194
Query: 572 ---RTTVIVAHRLSTVRNADMIA 591
R T+ V R V +IA
Sbjct: 195 HNVRETLAVCERAYIVSQGHLIA 217
|
Length = 241 |
| >gnl|CDD|236707 PRK10522, PRK10522, multidrug transporter membrane component/ATP-binding component; Provisional | Back alignment and domain information |
|---|
Score = 68.8 bits (169), Expect = 8e-12
Identities = 55/172 (31%), Positives = 79/172 (45%), Gaps = 26/172 (15%)
Query: 384 IELRDVYFSYPARPNEQIFSGFS-----ISISSGTTAALVGQSGSGKSTVISLIERFYDP 438
+ELR+V F+Y GFS ++I G L+G +GSGKST+ L+ Y P
Sbjct: 323 LELRNVTFAYQDN-------GFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQP 375
Query: 439 QAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATEL 498
Q+GE+L+DG + Q + RK V + LF + G + V L
Sbjct: 376 QSGEILLDGKPVTAEQPEDYRKLFSAVFTDFHLFDQLL------GPEGKPANPALVEKWL 429
Query: 499 ANAAKFIDKLPQGIDTLVGEH--GTQLSGGQKQRIAIARAILKDPRILLLDE 548
K KL L +LS GQK+R+A+ A+ ++ ILLLDE
Sbjct: 430 ER-LKMAHKL-----ELEDGRISNLKLSKGQKKRLALLLALAEERDILLLDE 475
|
Length = 547 |
| >gnl|CDD|130234 TIGR01166, cbiO, cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Score = 64.8 bits (158), Expect = 1e-11
Identities = 32/95 (33%), Positives = 53/95 (55%), Gaps = 6/95 (6%)
Query: 1052 YPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQ- 1110
YP P+V + LN G+ +AL+G +G+GKST++ L P +G + +DG +
Sbjct: 1 YPGGPEV--LKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDY 58
Query: 1111 -KLQLKWLRQQMGLVSQEP--VLFNDTIRANIAYG 1142
+ L RQ++GLV Q+P LF + ++A+G
Sbjct: 59 SRKGLLERRQRVGLVFQDPDDQLFAADVDQDVAFG 93
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux [Transport and binding proteins, Cations and iron carrying compounds]. Length = 190 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 68.0 bits (167), Expect = 1e-11
Identities = 32/117 (27%), Positives = 56/117 (47%), Gaps = 16/117 (13%)
Query: 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHI 1102
I L ++S Y RP + +++L + G+ + LVG +G+GKST++ +L +PD+G +
Sbjct: 4 ITLENLSLAYGDRP---LLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEV 60
Query: 1103 TLDGVEIQKLQLKWLRQQMGLVSQEPVLF-NDTIRANIAYG-KGGDATEAEIQAASE 1157
T ++G +SQEP L T+ + G AE++ A
Sbjct: 61 TRPKGL-----------RVGYLSQEPPLDPEKTVLDYVIEGFGELRELLAELEEAYA 106
|
Length = 530 |
| >gnl|CDD|213188 cd03221, ABCF_EF-3, ATP-binding cassette domain of elongation factor 3, subfamily F | Back alignment and domain information |
|---|
Score = 63.2 bits (155), Expect = 1e-11
Identities = 34/79 (43%), Positives = 50/79 (63%), Gaps = 7/79 (8%)
Query: 522 QLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAH-R 580
QLSGG+K R+A+A+ +L++P +LLLDE T+ LD ES + ++EAL T ++V+H R
Sbjct: 70 QLSGGEKMRLALAKLLLENPNLLLLDEPTNHLDLESIEALEEALKEY--PGTVILVSHDR 127
Query: 581 --LSTVRNADMIAVIHRGK 597
L V A I + GK
Sbjct: 128 YFLDQV--ATKIIELEDGK 144
|
Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. Length = 144 |
| >gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Score = 67.7 bits (165), Expect = 3e-11
Identities = 61/208 (29%), Positives = 95/208 (45%), Gaps = 39/208 (18%)
Query: 974 DGKATFSDVFKVFFSLTMTAIGISQSSSFSSDSNKAK-------SAAASIFAIIDRESKI 1026
GK DV F ++ + I + +FS DS K S +++ +++ R
Sbjct: 1163 KGKIEIMDV--NFRYISRPNVPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMR---- 1216
Query: 1027 DPSDESGTILEDVKGEIELHHVSFKYPSRPDVQVFRDL------NLKIRAGKTVALVGES 1080
D+K + HH+ FK D+ +D N+ ++ +L E
Sbjct: 1217 ---------FYDLKND---HHIVFKNEHTNDMTNEQDYQGDEEQNVGMKNVNEFSLTKEG 1264
Query: 1081 GSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIA 1140
GSG+ + V ++G I LDGV+I LK LR +VSQEP+LFN +I NI
Sbjct: 1265 GSGEDSTVF-------KNSGKILLDGVDICDYNLKDLRNLFSIVSQEPMLFNMSIYENIK 1317
Query: 1141 YGKGGDATEAEIQAASEMANAHKFICSL 1168
+GK DAT +++ A + A +FI SL
Sbjct: 1318 FGK-EDATREDVKRACKFAAIDEFIESL 1344
|
Length = 1466 |
| >gnl|CDD|213183 cd03216, ABC_Carb_Monos_I, First domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 62.8 bits (154), Expect = 3e-11
Identities = 24/68 (35%), Positives = 43/68 (63%), Gaps = 3/68 (4%)
Query: 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHI 1102
+EL ++ ++ V+ ++L +R G+ AL+GE+G+GKST++ +L Y PD+G I
Sbjct: 1 LELRGITKRFGG---VKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEI 57
Query: 1103 TLDGVEIQ 1110
+DG E+
Sbjct: 58 LVDGKEVS 65
|
This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 163 |
| >gnl|CDD|183077 PRK11288, araG, L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 67.2 bits (165), Expect = 3e-11
Identities = 59/226 (26%), Positives = 104/226 (46%), Gaps = 30/226 (13%)
Query: 397 PNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQ 456
P + S +G AL+G++G+GKST++ ++ Y P AG +LIDG +E +
Sbjct: 15 PGVKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDG---QEMRFA 71
Query: 457 WIRKK----IGLVSQE----PVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKL 508
+ ++ QE P + ++ +N+ G+ + A + ++ L
Sbjct: 72 STTAALAAGVAIIYQELHLVPEM---TVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHL 128
Query: 509 PQGID--TLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDA-ESE---KVVQ 562
ID T + LS GQ+Q + IA+A+ ++ R++ DE TS+L A E E +V++
Sbjct: 129 GVDIDPDTPLKY----LSIGQRQMVEIAKALARNARVIAFDEPTSSLSAREIEQLFRVIR 184
Query: 563 EALDRIMVNRTTVIVAHRLSTV-RNADMIAVIHRGKIVEKGTHSKL 607
E R + V+HR+ + D I V G+ V T +
Sbjct: 185 ELRAE---GRVILYVSHRMEEIFALCDAITVFKDGRYVA--TFDDM 225
|
Length = 501 |
| >gnl|CDD|226631 COG4152, COG4152, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 65.5 bits (160), Expect = 3e-11
Identities = 51/206 (24%), Positives = 96/206 (46%), Gaps = 18/206 (8%)
Query: 404 GFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIG 463
S + G L+G +G+GK+T +I +P GE+ +G L Q I+ +IG
Sbjct: 20 NISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLS----QEIKNRIG 75
Query: 464 LVSQEPVLFTG-SIKDNIAY--GKDDATTEEIRV-ATELANAAKFIDKLPQGIDTLVGEH 519
+ +E L+ +++D + Y EI+ + + K + I L
Sbjct: 76 YLPEERGLYPKMTVEDQLKYLAELKGMPKAEIQKKLQAWLERLEIVGKKTKKIKEL---- 131
Query: 520 GTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVA- 578
S G +Q+I A++ +P +L+LDE S LD + +++++A+ + T+I +
Sbjct: 132 ----SKGNQQKIQFISAVIHEPELLILDEPFSGLDPVNVELLKDAIFELKEEGATIIFSS 187
Query: 579 HRLSTV-RNADMIAVIHRGKIVEKGT 603
HR+ V D + ++ +G+ V GT
Sbjct: 188 HRMEHVEELCDRLLMLKKGQTVLYGT 213
|
Length = 300 |
| >gnl|CDD|184195 PRK13635, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 64.7 bits (158), Expect = 4e-11
Identities = 35/104 (33%), Positives = 63/104 (60%), Gaps = 7/104 (6%)
Query: 1043 IELHHVSFKYP--SRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAG 1100
I + H+SF+YP + ++ D++ + G+ VA+VG +GSGKST+ LL P+AG
Sbjct: 6 IRVEHISFRYPDAATYALK---DVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAG 62
Query: 1101 HITLDGVEIQKLQLKWLRQQMGLVSQEP--VLFNDTIRANIAYG 1142
IT+ G+ + + + +R+Q+G+V Q P T++ ++A+G
Sbjct: 63 TITVGGMVLSEETVWDVRRQVGMVFQNPDNQFVGATVQDDVAFG 106
|
Length = 279 |
| >gnl|CDD|226927 COG4555, NatA, ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 64.0 bits (156), Expect = 4e-11
Identities = 34/121 (28%), Positives = 67/121 (55%), Gaps = 9/121 (7%)
Query: 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHI 1102
+E+ ++ Y S+ VQ RD++ + G+ L+GE+G+GK+T++ ++ PD+G +
Sbjct: 2 LEVTDLTKSYGSK--VQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKV 59
Query: 1103 TLDGVEIQKLQLKWLRQQMGLVSQEPVLFND-TIRANIAY-----GKGGDATEAEIQAAS 1156
T+DGV+ + ++R+++G++ E L+ T R N+ Y G +A I S
Sbjct: 60 TIDGVDTVR-DPSFVRRKIGVLFGERGLYARLTARENLKYFARLNGLSRKEIKARIAELS 118
Query: 1157 E 1157
+
Sbjct: 119 K 119
|
Length = 245 |
| >gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 66.8 bits (164), Expect = 4e-11
Identities = 32/103 (31%), Positives = 53/103 (51%), Gaps = 7/103 (6%)
Query: 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHI 1102
+EL +S + V+ ++L +R G+ AL+GE+G+GKST++ +L Y PD+G I
Sbjct: 9 LELRGISKSFG---GVKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEI 65
Query: 1103 TLDGVEIQKLQLKWLRQQMG--LVSQEPVLFND-TIRANIAYG 1142
+DG + + G V QE L + ++ NI G
Sbjct: 66 LIDGKPVAFSSPR-DALAAGIATVHQELSLVPNLSVAENIFLG 107
|
Length = 500 |
| >gnl|CDD|226970 COG4619, COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 63.7 bits (155), Expect = 4e-11
Identities = 27/83 (32%), Positives = 51/83 (61%)
Query: 1057 DVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKW 1116
D ++ +++L +RAG+ +A+ G SG GKST++ ++ P +G + +G ++ L+ +
Sbjct: 15 DAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPEA 74
Query: 1117 LRQQMGLVSQEPVLFNDTIRANI 1139
RQQ+ +Q P LF DT+ N+
Sbjct: 75 YRQQVSYCAQTPALFGDTVEDNL 97
|
Length = 223 |
| >gnl|CDD|163483 TIGR03771, anch_rpt_ABC, anchored repeat-type ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 63.7 bits (155), Expect = 4e-11
Identities = 55/227 (24%), Positives = 93/227 (40%), Gaps = 45/227 (19%)
Query: 407 ISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVS 466
+S G L+G +G+GK+T++ I P G V + G + + + IG V
Sbjct: 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPGKG-----WRHIGYVP 55
Query: 467 QE-------PVLFTGSIKDNIA--------YGKDDATTEEIRVATELANAAKFIDKLPQG 511
Q P+ ++ D +R A + D+ P G
Sbjct: 56 QRHEFAWDFPISVAHTVMSGRTGHIGWLRRPCVADFAA--VRDALRRVGLTELADR-PVG 112
Query: 512 IDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVN 571
+LSGGQ+QR+ +ARA+ P +LLLDE + LD +++++ E +
Sbjct: 113 ----------ELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTELFIELAGA 162
Query: 572 RTTVI-VAHRLSTVRNADMIAVIHR-----GKIVEKGTHSKLVEDPE 612
T ++ H L A +A R G+++ GT +L +DP
Sbjct: 163 GTAILMTTHDL-----AQAMATCDRVVLLNGRVIADGTPQQL-QDPA 203
|
This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown [Transport and binding proteins, Unknown substrate]. Length = 223 |
| >gnl|CDD|237651 PRK14266, PRK14266, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 64.2 bits (156), Expect = 5e-11
Identities = 36/93 (38%), Positives = 52/93 (55%), Gaps = 7/93 (7%)
Query: 1057 DVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYD-----PDAGHITLDGVEI-- 1109
D + +++NL I AL+G SG GKST + L R D GHI LDGV+I
Sbjct: 15 DAHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYD 74
Query: 1110 QKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYG 1142
+ + LR+++G+V Q+P F +I N+AYG
Sbjct: 75 PAVDVVELRKKVGMVFQKPNPFPKSIFDNVAYG 107
|
Length = 250 |
| >gnl|CDD|184208 PRK13649, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 64.4 bits (157), Expect = 5e-11
Identities = 42/128 (32%), Positives = 67/128 (52%), Gaps = 11/128 (8%)
Query: 1043 IELHHVSFKYPSRPDVQ--VFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAG 1100
I L +VS+ Y + + D+NL I G A +G +GSGKST++ LL + P G
Sbjct: 3 INLQNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQG 62
Query: 1101 HITLDGVEI----QKLQLKWLRQQMGLVSQ--EPVLFNDTIRANIAYGK---GGDATEAE 1151
+ +D I + +K +R+++GLV Q E LF +T+ ++A+G G EAE
Sbjct: 63 SVRVDDTLITSTSKNKDIKQIRKKVGLVFQFPESQLFEETVLKDVAFGPQNFGVSQEEAE 122
Query: 1152 IQAASEMA 1159
A ++A
Sbjct: 123 ALAREKLA 130
|
Length = 280 |
| >gnl|CDD|214372 CHL00131, ycf16, sulfate ABC transporter protein; Validated | Back alignment and domain information |
|---|
Score = 63.9 bits (156), Expect = 6e-11
Identities = 61/224 (27%), Positives = 112/224 (50%), Gaps = 25/224 (11%)
Query: 398 NEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERF--YDPQAGEVLIDGINLKEFQL 455
+I G ++SI+ G A++G +GSGKST+ +I Y G++L G ++ + +
Sbjct: 19 ENEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEP 78
Query: 456 QWIRKKIG--LVSQEPVLFTG-SIKD--NIAYGKDDATTEEIRVATELANAAKFIDKLPQ 510
+ R +G L Q P+ G S D +AY + + + EL + +F++ + +
Sbjct: 79 E-ERAHLGIFLAFQYPIEIPGVSNADFLRLAYN----SKRKFQGLPEL-DPLEFLEIINE 132
Query: 511 GIDTLVGEHGTQL--------SGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQ 562
+ LVG + L SGG+K+R I + L D + +LDE S LD ++ K++
Sbjct: 133 KLK-LVGMDPSFLSRNVNEGFSGGEKKRNEILQMALLDSELAILDETDSGLDIDALKIIA 191
Query: 563 EALDRIM-VNRTTVIVAH--RLSTVRNADMIAVIHRGKIVEKGT 603
E ++++M + +++ H RL D + V+ GKI++ G
Sbjct: 192 EGINKLMTSENSIILITHYQRLLDYIKPDYVHVMQNGKIIKTGD 235
|
Length = 252 |
| >gnl|CDD|223521 COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 64.5 bits (158), Expect = 8e-11
Identities = 25/100 (25%), Positives = 47/100 (47%), Gaps = 11/100 (11%)
Query: 1047 HVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPD-----AGH 1101
VSF + V+ ++ +++ G+ + +VGESGSGKS + + G
Sbjct: 8 SVSFPTDAGV-VKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGE 66
Query: 1102 ITLDGVEIQKLQLKWLRQ----QMGLVSQEPVL-FNDTIR 1136
I DG ++ L K LR+ ++ ++ Q+P+ N +
Sbjct: 67 ILFDGKDLLSLSEKELRKIRGKEIAMIFQDPMTSLNPVMT 106
|
Length = 316 |
| >gnl|CDD|226643 COG4175, ProV, ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 65.1 bits (159), Expect = 8e-11
Identities = 32/86 (37%), Positives = 49/86 (56%), Gaps = 5/86 (5%)
Query: 1062 RDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQ-- 1119
D +L + G+ ++G SGSGKST+V LL R +P G I +DG +I KL LR+
Sbjct: 45 NDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRGEILVDGKDIAKLSAAELRELR 104
Query: 1120 --QMGLVSQEPVLF-NDTIRANIAYG 1142
++ +V Q L + T+ N+A+G
Sbjct: 105 RKKISMVFQSFALLPHRTVLENVAFG 130
|
Length = 386 |
| >gnl|CDD|185049 PRK15093, PRK15093, antimicrobial peptide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 64.8 bits (158), Expect = 8e-11
Identities = 63/239 (26%), Positives = 107/239 (44%), Gaps = 29/239 (12%)
Query: 406 SISISSGTTAALVGQSGSGKSTVISLI----ERFYDPQAGEVLIDGINLKEFQLQWIRKK 461
S++++ G LVG+SGSGKS + I + + A + D I+L + RK
Sbjct: 27 SMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPRERRKL 86
Query: 462 IG----LVSQEP---VLFTGSIKDNIAYGKDDATTE---------EIRVATELANAAKFI 505
+G ++ QEP + + + + T + R A EL +
Sbjct: 87 VGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIK 146
Query: 506 DKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEAL 565
D + +L+ G+ Q++ IA A+ PR+L+ DE T+A++ ++ + L
Sbjct: 147 DH-----KDAMRSFPYELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLL 201
Query: 566 DRIMVNRTTVI--VAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVEDPEGAYSQ-LIR 620
R+ N T I ++H L + AD I V++ G+ VE +LV P Y+Q LIR
Sbjct: 202 TRLNQNNNTTILLISHDLQMLSQWADKINVLYCGQTVETAPSKELVTTPHHPYTQALIR 260
|
Length = 330 |
| >gnl|CDD|237645 PRK14235, PRK14235, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 63.6 bits (155), Expect = 9e-11
Identities = 38/100 (38%), Positives = 51/100 (51%), Gaps = 14/100 (14%)
Query: 1057 DVQVF-------RDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYD--PDA---GHITL 1104
DV VF D++L I A +G SG GKST + L R D G ITL
Sbjct: 24 DVSVFYGEKQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITL 83
Query: 1105 DGVEI--QKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYG 1142
DG +I +L + LR ++G+V Q+P F +I N+AYG
Sbjct: 84 DGEDIYDPRLDVVELRARVGMVFQKPNPFPKSIYENVAYG 123
|
Length = 267 |
| >gnl|CDD|184132 PRK13547, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 63.7 bits (155), Expect = 9e-11
Identities = 65/240 (27%), Positives = 99/240 (41%), Gaps = 42/240 (17%)
Query: 395 ARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVI-SLIERFYDPQA-------GEVLID 446
AR + I S+ I G AL+G++G+GKST++ +L A G+V ++
Sbjct: 10 ARRHRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLN 69
Query: 447 GINLKEFQ-LQWIRKKIGLVSQEPVLFTGSIKDNIAYG------KDDATTEEIR----VA 495
G L + R + L F S ++ + G + A T A
Sbjct: 70 GEPLAAIDAPRLARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQA 129
Query: 496 TELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILK---------DPRILLL 546
LA A LVG T LSGG+ R+ AR + + PR LLL
Sbjct: 130 LALAGA-----------TALVGRDVTTLSGGELARVQFARVLAQLWPPHDAAQPPRYLLL 178
Query: 547 DEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLS-TVRNADMIAVIHRGKIVEKGT 603
DE T+ALD + + + + R+ N + + H + R+AD IA++ G IV G
Sbjct: 179 DEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPNLAARHADRIAMLADGAIVAHGA 238
|
Length = 272 |
| >gnl|CDD|172733 PRK14245, PRK14245, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 63.1 bits (153), Expect = 1e-10
Identities = 37/108 (34%), Positives = 56/108 (51%), Gaps = 10/108 (9%)
Query: 1042 EIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYD--PDA 1099
+I+ V+F Y D + ++++I VA +G SG GKST + L R D P
Sbjct: 3 KIDARDVNFWYG---DFHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPAT 59
Query: 1100 ---GHITLDGVEI--QKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYG 1142
G I +DG I + +Q+ LR+ +G+V Q P F +I N+AYG
Sbjct: 60 RLEGEIRIDGRNIYDKGVQVDELRKNVGMVFQRPNPFPKSIFENVAYG 107
|
Length = 250 |
| >gnl|CDD|224046 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 62.6 bits (153), Expect = 1e-10
Identities = 28/85 (32%), Positives = 49/85 (57%), Gaps = 6/85 (7%)
Query: 1042 EIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGH 1101
IE+ +++ Y +RP V D++L + G+ AL+G +G+GKST++ + P +G
Sbjct: 4 MIEVENLTVSYGNRP---VLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGE 60
Query: 1102 ITLDGVEIQKLQLKWLRQQMGLVSQ 1126
I + G ++K + K LR +G V Q
Sbjct: 61 IKIFGKPVRK-RRKRLR--IGYVPQ 82
|
Length = 254 |
| >gnl|CDD|184200 PRK13640, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 63.3 bits (154), Expect = 1e-10
Identities = 31/89 (34%), Positives = 47/89 (52%), Gaps = 4/89 (4%)
Query: 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDA--- 1099
+E HVSF YP D++ I G AL+G +GSGKST+ L+ PD
Sbjct: 6 VEFKHVSFTYPDSK-KPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPN 64
Query: 1100 GHITLDGVEIQKLQLKWLRQQMGLVSQEP 1128
IT+DG+ + + +R+++G+V Q P
Sbjct: 65 SKITVDGITLTAKTVWDIREKVGIVFQNP 93
|
Length = 282 |
| >gnl|CDD|240327 PTZ00243, PTZ00243, ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 66.0 bits (161), Expect = 1e-10
Identities = 36/99 (36%), Positives = 59/99 (59%), Gaps = 2/99 (2%)
Query: 1060 VFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQ 1119
V R ++ +I + V +VG +GSGKST++ R + G I ++G EI L+ LR+
Sbjct: 1325 VLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGLRELRR 1384
Query: 1120 QMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEM 1158
Q ++ Q+PVLF+ T+R N+ +A+ AE+ AA E+
Sbjct: 1385 QFSMIPQDPVLFDGTVRQNV--DPFLEASSAEVWAALEL 1421
|
Length = 1560 |
| >gnl|CDD|182331 PRK10247, PRK10247, putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Score = 62.8 bits (153), Expect = 1e-10
Identities = 27/99 (27%), Positives = 53/99 (53%), Gaps = 3/99 (3%)
Query: 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHI 1102
++L +V + + +++ +RAG+ + G SG GKST++ ++ P +G +
Sbjct: 8 LQLQNVGYLAGDAK---ILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTL 64
Query: 1103 TLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIAY 1141
+G +I L+ + RQQ+ +Q P LF DT+ N+ +
Sbjct: 65 LFEGEDISTLKPEIYRQQVSYCAQTPTLFGDTVYDNLIF 103
|
Length = 225 |
| >gnl|CDD|224044 COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 63.1 bits (154), Expect = 1e-10
Identities = 44/155 (28%), Positives = 75/155 (48%), Gaps = 21/155 (13%)
Query: 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHI 1102
IEL +VS + + + DL+ ++ G+ A+VG +G+GK+T++SLL + P +G +
Sbjct: 32 IELKNVSVRRNGKK---ILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDV 88
Query: 1103 TLDGVEIQKLQLKW-LRQQMGLVS---QEPVLFNDTIRANIAYGK-------GGDATEAE 1151
TL G K + + LR+++GLVS E +T+R + G D T +
Sbjct: 89 TLLGRRFGKGETIFELRKRIGLVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAED 148
Query: 1152 IQAASEMAN-------AHKFICSLQQVRTSRLLLV 1179
+ AA + A + SL Q R+L+
Sbjct: 149 LAAAQWLLELLGAKHLADRPFGSLSQGEQRRVLIA 183
|
Length = 257 |
| >gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Score = 65.0 bits (159), Expect = 1e-10
Identities = 47/212 (22%), Positives = 86/212 (40%), Gaps = 34/212 (16%)
Query: 387 RDVYFSYPARPNEQIFSGFSISISSGTTA-----ALVGQSGSGKSTVISLIERFYDPQAG 441
RD YP F + + G ++G +G GK+T + L+ P G
Sbjct: 339 RDTLVEYPDLKKTY--GDFKLEVEEGEIYDGEVIGILGPNGIGKTTFVKLLAGVIKPDEG 396
Query: 442 EVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANA 501
++ K Q+I + G+++D + + TE+
Sbjct: 397 SEEDLKVSYKP---QYISPD----------YDGTVEDLL-RSAIRSAFGSSYFKTEIVK- 441
Query: 502 AKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVV 561
P ++ L+ +LSGG+ QR+AIA A+ ++ + LLDE ++ LD E +V
Sbjct: 442 -------PLNLEDLLERPVDELSGGELQRVAIAAALSREADLYLLDEPSAYLDVEQRIIV 494
Query: 562 QEALDRIMVNR--TTVIVAHRLSTVRNADMIA 591
+ + R + N T ++V H + D ++
Sbjct: 495 AKVIRRFIENNEKTALVVDHDIYM---IDYVS 523
|
Length = 591 |
| >gnl|CDD|215640 PLN03232, PLN03232, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 65.4 bits (159), Expect = 2e-10
Identities = 46/175 (26%), Positives = 86/175 (49%), Gaps = 16/175 (9%)
Query: 974 DGKATFSDVFKVFFSLTMTAIGISQSSSFSSDSNKAKSAAASIFAIIDRESKIDPSDESG 1033
+ +A F+ + S T+ ++ S +A A S+ ++ + ID E+
Sbjct: 1163 ENQAGFASTMGLLLSYTLNI-----TTLLSGVLRQASKAENSLNSVERVGNYIDLPSEAT 1217
Query: 1034 TILED--------VKGEIELHHVSFKYPSRPDVQ-VFRDLNLKIRAGKTVALVGESGSGK 1084
I+E+ +G I+ V +Y RP + V L+ + + V +VG +G+GK
Sbjct: 1218 AIIENNRPVSGWPSRGSIKFEDVHLRY--RPGLPPVLHGLSFFVSPSEKVGVVGRTGAGK 1275
Query: 1085 STVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANI 1139
S++++ L R + + G I +D ++ K L LR+ + ++ Q PVLF+ T+R NI
Sbjct: 1276 SSMLNALFRIVELEKGRIMIDDCDVAKFGLTDLRRVLSIIPQSPVLFSGTVRFNI 1330
|
Length = 1495 |
| >gnl|CDD|181906 PRK09493, glnQ, glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 62.0 bits (151), Expect = 2e-10
Identities = 38/119 (31%), Positives = 66/119 (55%), Gaps = 10/119 (8%)
Query: 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHI 1102
IE +VS + QV +++L I G+ V ++G SGSGKST++ + + + +G +
Sbjct: 2 IEFKNVSKHFG---PTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDL 58
Query: 1103 TLDGVEIQ--KLQLKWLRQQMGLVSQEPVLFND-TIRANIAYG----KGGDATEAEIQA 1154
+DG+++ K+ + +RQ+ G+V Q+ LF T N+ +G +G EAE QA
Sbjct: 59 IVDGLKVNDPKVDERLIRQEAGMVFQQFYLFPHLTALENVMFGPLRVRGASKEEAEKQA 117
|
Length = 240 |
| >gnl|CDD|182182 PRK09984, PRK09984, phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 62.7 bits (152), Expect = 2e-10
Identities = 60/219 (27%), Positives = 100/219 (45%), Gaps = 15/219 (6%)
Query: 400 QIFSGFSISISSGTTAALVGQSGSGKSTVI----SLIERFYDPQAGEVLIDGINLKEFQL 455
Q ++I G AL+G SGSGKST++ LI + L+ +E +L
Sbjct: 18 QALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRL 77
Query: 456 QW-IRK---KIGLVSQEPVLFTG-SIKDNIAYGKDDATT---EEIRVATELANAAKFIDK 507
IRK G + Q+ L S+ +N+ G +T T
Sbjct: 78 ARDIRKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQAL 137
Query: 508 LPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDR 567
G+ + + LSGGQ+QR+AIARA+++ +++L DE ++LD ES ++V + L
Sbjct: 138 TRVGMVHFAHQRVSTLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRD 197
Query: 568 IMVNR--TTVIVAHRLS-TVRNADMIAVIHRGKIVEKGT 603
I N T V+ H++ +R + I + +G + G+
Sbjct: 198 INQNDGITVVVTLHQVDYALRYCERIVALRQGHVFYDGS 236
|
Length = 262 |
| >gnl|CDD|236992 PRK11819, PRK11819, putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 64.8 bits (159), Expect = 2e-10
Identities = 58/202 (28%), Positives = 89/202 (44%), Gaps = 62/202 (30%)
Query: 397 PNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQ 456
P +QI S+S G ++G +G+GKST++ ++ AG +D KEF+ +
Sbjct: 18 PKKQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIM-------AG---VD----KEFEGE 63
Query: 457 -WIRK--KIGLVSQEPVL---FT---------GSIKD--------NIAYGKDDATTEEIR 493
K+G + QEP L T +K AY + DA + +
Sbjct: 64 ARPAPGIKVGYLPQEPQLDPEKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDAL- 122
Query: 494 VATELANAAKFID------------------KLPQGIDTLVGEHGTQLSGGQKQRIAIAR 535
A E + ID + P D V T+LSGG+++R+A+ R
Sbjct: 123 -AAEQGELQEIIDAADAWDLDSQLEIAMDALRCPPW-DAKV----TKLSGGERRRVALCR 176
Query: 536 AILKDPRILLLDEATSALDAES 557
+L+ P +LLLDE T+ LDAES
Sbjct: 177 LLLEKPDMLLLDEPTNHLDAES 198
|
Length = 556 |
| >gnl|CDD|181965 PRK09580, sufC, cysteine desulfurase ATPase component; Reviewed | Back alignment and domain information |
|---|
Score = 62.5 bits (152), Expect = 2e-10
Identities = 58/237 (24%), Positives = 106/237 (44%), Gaps = 17/237 (7%)
Query: 400 QIFSGFSISISSGTTAALVGQSGSGKSTVISLI--ERFYDPQAGEVLIDGINLKEFQLQ- 456
I G ++ + G A++G +GSGKST+ + + Y+ G V G +L E +
Sbjct: 15 AILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELSPED 74
Query: 457 WIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELA--NAAKFID------KL 508
+ I + Q PV G + + R L + ++ K+
Sbjct: 75 RAGEGIFMAFQYPVEIPG-VSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKM 133
Query: 509 PQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRI 568
P+ D L SGG+K+R I + + +P + +LDE+ S LD ++ K+V + ++ +
Sbjct: 134 PE--DLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKIVADGVNSL 191
Query: 569 M-VNRTTVIVAH--RLSTVRNADMIAVIHRGKIVEKGTHSKLVEDPEGAYSQLIRLQ 622
R+ +IV H R+ D + V+++G+IV+ G + + + E Y L Q
Sbjct: 192 RDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSGDFTLVKQLEEQGYGWLTEQQ 248
|
Length = 248 |
| >gnl|CDD|184582 PRK14236, PRK14236, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 62.0 bits (151), Expect = 3e-10
Identities = 36/113 (31%), Positives = 58/113 (51%), Gaps = 12/113 (10%)
Query: 1037 EDVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYD 1096
E +E+ +++ Y D Q D++++I + A +G SG GKST++ R D
Sbjct: 22 EQTA--LEVRNLNLFYG---DKQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMND 76
Query: 1097 P-DA----GHITLDGVEI--QKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYG 1142
D G I LDG I +K+ + LR+++G+V Q P F +I N+ YG
Sbjct: 77 LVDNCRIEGEIRLDGQNIYDKKVDVAELRRRVGMVFQRPNPFPKSIYENVVYG 129
|
Length = 272 |
| >gnl|CDD|215650 pfam00005, ABC_tran, ABC transporter | Back alignment and domain information |
|---|
Score = 58.5 bits (142), Expect = 3e-10
Identities = 27/83 (32%), Positives = 44/83 (53%), Gaps = 2/83 (2%)
Query: 1085 STVVSLLQRFYDPDAGHITLDGVEIQKL-QLKWLRQQMGLVSQEPVLFND-TIRANIAYG 1142
ST++ L+ P +G I LDG + L K LR+++G+V Q+P LF + T+R N+ +G
Sbjct: 1 STLLKLITGLLQPTSGTILLDGEDGTGLSSRKLLRKRIGVVFQDPQLFPELTVRENLFFG 60
Query: 1143 KGGDATEAEIQAASEMANAHKFI 1165
+A + A E F+
Sbjct: 61 LRDKEADARAEEALERVGLPDFL 83
|
ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide as in human CFTR, or belong in different polypeptide chains. Length = 119 |
| >gnl|CDD|237454 PRK13634, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 62.3 bits (152), Expect = 3e-10
Identities = 41/128 (32%), Positives = 67/128 (52%), Gaps = 12/128 (9%)
Query: 1042 EIELHHVSFKY-PSRP-DVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDA 1099
+I V +Y P + + D+N+ I +G VA++G +GSGKST++ L P +
Sbjct: 2 DITFQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTS 61
Query: 1100 GHITLDGVEIQ----KLQLKWLRQQMGLVSQ--EPVLFNDTIRANIAYGK---GGDATEA 1150
G +T+ I +LK LR+++G+V Q E LF +T+ +I +G G +A
Sbjct: 62 GTVTIGERVITAGKKNKKLKPLRKKVGIVFQFPEHQLFEETVEKDICFGPMNFGVSEEDA 121
Query: 1151 EIQAASEM 1158
+ Q A EM
Sbjct: 122 K-QKAREM 128
|
Length = 290 |
| >gnl|CDD|182852 PRK10938, PRK10938, putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Score = 63.9 bits (156), Expect = 3e-10
Identities = 68/242 (28%), Positives = 107/242 (44%), Gaps = 51/242 (21%)
Query: 365 PEIDAYDTKGKILDDIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSG 424
PE D + + + I L + SY RP I S ++ G +VG +G+G
Sbjct: 243 PEPDEPSARHALPANE-PRIVLNNGVVSYNDRP---ILHNLSWQVNPGEHWQIVGPNGAG 298
Query: 425 KSTVISLIERFYDPQA--------------GEVLIDGINLKEFQLQWIRKKIGLVSQEPV 470
KST++SLI + PQ GE + D I+K IG VS
Sbjct: 299 KSTLLSLITGDH-PQGYSNDLTLFGRRRGSGETIWD-----------IKKHIGYVSSSLH 346
Query: 471 L---FTGSIKDNIAYGKDD------ATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGT 521
L + S+++ I G D A ++ + A +++D L GID +
Sbjct: 347 LDYRVSTSVRNVILSGFFDSIGIYQAVSDRQQKL-----AQQWLDIL--GIDKRTADAPF 399
Query: 522 Q-LSGGQKQRIA-IARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTT--VIV 577
LS GQ QR+A I RA++K P +L+LDE LD + ++V+ +D ++ T + V
Sbjct: 400 HSLSWGQ-QRLALIVRALVKHPTLLILDEPLQGLDPLNRQLVRRFVDVLISEGETQLLFV 458
Query: 578 AH 579
+H
Sbjct: 459 SH 460
|
Length = 490 |
| >gnl|CDD|236863 PRK11153, metN, DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 62.5 bits (153), Expect = 4e-10
Identities = 31/106 (29%), Positives = 58/106 (54%), Gaps = 11/106 (10%)
Query: 1043 IELHHVSFKYP-SRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGH 1101
IEL ++S +P + +++L I AG+ ++G SG+GKST++ + P +G
Sbjct: 2 IELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGR 61
Query: 1102 ITLDGVEIQKL---QLKWLRQQMGLVSQEPVLFN----DTIRANIA 1140
+ +DG ++ L +L+ R+Q+G++ Q FN T+ N+A
Sbjct: 62 VLVDGQDLTALSEKELRKARRQIGMIFQH---FNLLSSRTVFDNVA 104
|
Length = 343 |
| >gnl|CDD|213256 cd03289, ABCC_CFTR2, ATP-binding cassette domain 2 of CFTR,subfamily C | Back alignment and domain information |
|---|
Score = 61.8 bits (150), Expect = 4e-10
Identities = 34/107 (31%), Positives = 60/107 (56%), Gaps = 3/107 (2%)
Query: 1041 GEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAG 1100
G++ + ++ KY + V +++ I G+ V L+G +GSGKST++S R + + G
Sbjct: 1 GQMTVKDLTAKYTEGGNA-VLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNTE-G 58
Query: 1101 HITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANI-AYGKGGD 1146
I +DGV + L+ R+ G++ Q+ +F+ T R N+ YGK D
Sbjct: 59 DIQIDGVSWNSVPLQKWRKAFGVIPQKVFIFSGTFRKNLDPYGKWSD 105
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. Length = 275 |
| >gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 63.3 bits (155), Expect = 4e-10
Identities = 33/110 (30%), Positives = 62/110 (56%), Gaps = 11/110 (10%)
Query: 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHI 1102
+E+ ++ ++P V D++L ++ G+ AL+GE+G+GKST++ +L Y PD+G I
Sbjct: 5 LEMRGITKRFP---GVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEI 61
Query: 1103 TLDGVEIQKLQLK----WLRQQMGLVSQEPVLF-NDTIRANIAYGKGGDA 1147
+DG +++++K +R +G+V Q +L T+ NI G
Sbjct: 62 RVDG---KEVRIKSPRDAIRLGIGMVHQHFMLVPTLTVAENIILGLEPSK 108
|
Length = 501 |
| >gnl|CDD|184125 PRK13538, PRK13538, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 60.6 bits (148), Expect = 4e-10
Identities = 44/177 (24%), Positives = 81/177 (45%), Gaps = 28/177 (15%)
Query: 401 IFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLK----EF--Q 454
+FSG S ++++G + G +G+GK++++ ++ P AGEVL G ++ E+
Sbjct: 16 LFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQRDEYHQD 75
Query: 455 LQWIRKKIG----LVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQ 510
L ++ + G L + E + F + E + A A F D +P
Sbjct: 76 LLYLGHQPGIKTELTALENLRFYQRLHG-------PGDDEALWEALAQVGLAGFED-VPV 127
Query: 511 GIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDR 567
QLS GQ++R+A+AR L + +LDE +A+D + ++ L +
Sbjct: 128 R----------QLSAGQQRRVALARLWLTRAPLWILDEPFTAIDKQGVARLEALLAQ 174
|
Length = 204 |
| >gnl|CDD|213266 cd03299, ABC_ModC_like, ATP-binding cassette domain similar to the molybdate transporter | Back alignment and domain information |
|---|
Score = 60.8 bits (148), Expect = 5e-10
Identities = 27/82 (32%), Positives = 47/82 (57%), Gaps = 3/82 (3%)
Query: 1062 RDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQM 1121
++++L++ G ++G +GSGKS ++ + F PD+G I L+G +I L ++ +
Sbjct: 16 KNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDIT--NLPPEKRDI 73
Query: 1122 GLVSQEPVLF-NDTIRANIAYG 1142
V Q LF + T+ NIAYG
Sbjct: 74 SYVPQNYALFPHMTVYKNIAYG 95
|
Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|184199 PRK13639, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 61.6 bits (150), Expect = 5e-10
Identities = 31/104 (29%), Positives = 54/104 (51%), Gaps = 6/104 (5%)
Query: 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHI 1102
+E + + YP + + +N K G+ VAL+G +G+GKST+ P +G +
Sbjct: 2 LETRDLKYSYPD--GTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEV 59
Query: 1103 TLDGVEIQ--KLQLKWLRQQMGLVSQEP--VLFNDTIRANIAYG 1142
+ G I+ K L +R+ +G+V Q P LF T+ ++A+G
Sbjct: 60 LIKGEPIKYDKKSLLEVRKTVGIVFQNPDDQLFAPTVEEDVAFG 103
|
Length = 275 |
| >gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 63.3 bits (154), Expect = 5e-10
Identities = 62/224 (27%), Positives = 102/224 (45%), Gaps = 28/224 (12%)
Query: 404 GFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQA---GEVLIDGINLKEFQLQWIR- 459
G + + G L G++G+GKST++ ++ Y P GE+ G + IR
Sbjct: 19 GIDLEVRPGECVGLCGENGAGKSTLMKILSGVY-PHGTWDGEIYWSG---SPLKASNIRD 74
Query: 460 ---KKIGLVSQEPVLFTG-SIKDNIAYGKD-------DATTEEIRVATELANAAKFIDKL 508
I ++ QE L S+ +NI G + A A L + +D
Sbjct: 75 TERAGIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQ-LDAD 133
Query: 509 PQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSAL-DAESEKVVQEALDR 567
+ VG++G GGQ+Q + IA+A+ K R+L+LDE +S+L + E+E ++ D
Sbjct: 134 N--VTRPVGDYG----GGQQQLVEIAKALNKQARLLILDEPSSSLTEKETEILLDIIRDL 187
Query: 568 IMVNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVED 610
V ++H+L+ V+ D I VI G+ V S + ED
Sbjct: 188 KAHGVACVYISHKLNEVKAVCDTICVIRDGQHVATKDMSTMSED 231
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 500 |
| >gnl|CDD|185016 PRK15056, PRK15056, manganese/iron transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 61.4 bits (149), Expect = 5e-10
Identities = 66/249 (26%), Positives = 116/249 (46%), Gaps = 24/249 (9%)
Query: 406 SISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKK-IGL 464
S ++ G+ AALVG +GSGKST+ + F +G++ I G + Q ++K +
Sbjct: 27 SFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTR----QALQKNLVAY 82
Query: 465 VSQE-------PVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVG 517
V Q PVL ++D + G+ +R A + + +D +
Sbjct: 83 VPQSEEVDWSFPVL----VEDVVMMGRY-GHMGWLRRAK--KRDRQIVTAALARVDMVEF 135
Query: 518 EHGT--QLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVN-RTT 574
H +LSGGQK+R+ +ARAI + +++LLDE + +D ++E + L + +T
Sbjct: 136 RHRQIGELSGGQKKRVFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRDEGKTM 195
Query: 575 VIVAHRLSTVRNADMIAVIHRGKIVEKG-THSKLV-EDPEGAYSQLIRLQEANKESEQTI 632
++ H L +V V+ +G ++ G T + E+ E A+S ++R N E I
Sbjct: 196 LVSTHNLGSVTEFCDYTVMVKGTVLASGPTETTFTAENLELAFSGVLRHVALNGSEESII 255
Query: 633 DGQRKSEIS 641
+ IS
Sbjct: 256 TDDERPFIS 264
|
Length = 272 |
| >gnl|CDD|181939 PRK09544, znuC, high-affinity zinc transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 60.9 bits (148), Expect = 5e-10
Identities = 50/203 (24%), Positives = 99/203 (48%), Gaps = 25/203 (12%)
Query: 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 443
+ L +V S+ R ++ S S+ + G L+G +G+GKST++ ++ P G +
Sbjct: 5 VSLENVSVSFGQR---RVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVI 61
Query: 444 LIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAK 503
+G + ++ ++ +K+ L + P+ ++ K+D I A + A
Sbjct: 62 KRNG----KLRIGYVPQKLYLDTTLPLTVNRFLRLRPGTKKED-----ILPALKRVQAGH 112
Query: 504 FIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQE 563
ID Q +LSGG+ QR+ +ARA+L P++L+LDE T +D + + +
Sbjct: 113 LIDAPMQ-----------KLSGGETQRVLLARALLNRPQLLVLDEPTQGVDVNGQVALYD 161
Query: 564 ALDRIM--VNRTTVIVAHRLSTV 584
+D++ ++ ++V+H L V
Sbjct: 162 LIDQLRRELDCAVLMVSHDLHLV 184
|
Length = 251 |
| >gnl|CDD|226639 COG4170, SapD, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 62.2 bits (151), Expect = 5e-10
Identities = 63/253 (24%), Positives = 108/253 (42%), Gaps = 45/253 (17%)
Query: 400 QIFSGFSISISSGTTAALVGQSGSGKSTVISLI----ERFYDPQAGEVLIDGINLKEFQL 455
+ S++++ G LVG+SGSGKS + I + + A + D I+L
Sbjct: 21 KAVDRVSMTLNEGEIRGLVGESGSGKSLIAKAICGVNKDNWRVTADRMRFDDIDLLRLSP 80
Query: 456 QWIRKKIG----LVSQEPV--------------------LFTGSIKDNIAYGKDDATTEE 491
+ RK +G ++ QEP + G + K
Sbjct: 81 RERRKLVGHNVSMIFQEPQSCLDPSERVGRQLIQNIPAWTYKGRWWQRFGWRK------- 133
Query: 492 IRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATS 551
R A EL + D ++ + +L+ G+ Q++ IA A+ PR+L+ DE T+
Sbjct: 134 -RRAIELLHRVGIKDH-----KDIMRSYPYELTEGECQKVMIAIALANQPRLLIADEPTN 187
Query: 552 ALDAESEKVVQEALDRIMVNRTTVI--VAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLV 608
+++ ++ + L R+ N T I ++H L + AD I V++ G+ VE +LV
Sbjct: 188 SMEPTTQAQIFRLLSRLNQNSNTTILLISHDLQMISQWADKINVLYCGQTVESAPSEELV 247
Query: 609 EDPEGAYSQ-LIR 620
P Y+Q LIR
Sbjct: 248 TMPHHPYTQALIR 260
|
Length = 330 |
| >gnl|CDD|183080 PRK11300, livG, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 61.2 bits (149), Expect = 5e-10
Identities = 56/217 (25%), Positives = 103/217 (47%), Gaps = 25/217 (11%)
Query: 416 ALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVS--QEPVLFT 473
+L+G +G+GK+TV + + FY P G +L+ G +++ I + G+V Q LF
Sbjct: 35 SLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIARM-GVVRTFQHVRLFR 93
Query: 474 G-------------SIKDNIAYG--KDDATTEEIRVATELANAAKFIDKLPQGIDTLVGE 518
+K + G K A A L AA +++++ G+
Sbjct: 94 EMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEA--LDRAATWLERV--GLLEHANR 149
Query: 519 HGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALD--RIMVNRTTVI 576
L+ GQ++R+ IAR ++ P IL+LDE + L+ + K + E + R N T ++
Sbjct: 150 QAGNLAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLL 209
Query: 577 VAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVEDPE 612
+ H + V +D I V+++G + GT ++ +P+
Sbjct: 210 IEHDMKLVMGISDRIYVVNQGTPLANGTPEEIRNNPD 246
|
Length = 255 |
| >gnl|CDD|172730 PRK14242, PRK14242, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 60.9 bits (148), Expect = 6e-10
Identities = 40/108 (37%), Positives = 58/108 (53%), Gaps = 10/108 (9%)
Query: 1042 EIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYD--PDA 1099
++E +SF Y D Q D++L+ + AL+G SG GKST + L R D P A
Sbjct: 6 KMEARGLSFFYG---DFQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGA 62
Query: 1100 ---GHITLDGVEI--QKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYG 1142
G I LDG I + + LR+++G+V Q+P F +I N+AYG
Sbjct: 63 RVEGEILLDGENIYDPHVDVVELRRRVGMVFQKPNPFPKSIFENVAYG 110
|
Length = 253 |
| >gnl|CDD|183231 PRK11614, livF, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 60.7 bits (147), Expect = 6e-10
Identities = 57/218 (26%), Positives = 112/218 (51%), Gaps = 20/218 (9%)
Query: 400 QIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQA--GEVLIDGINLKEFQLQW 457
Q S+ I+ G L+G +G+GK+T++ + DP+A G ++ DG ++ ++Q
Sbjct: 19 QALHEVSLHINQGEIVTLIGANGAGKTTLLGTL--CGDPRATSGRIVFDGKDITDWQTAK 76
Query: 458 I-RKKIGLVSQEPVLFTG-SIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTL 515
I R+ + +V + +F+ ++++N+A G A ++ + + + P+ +
Sbjct: 77 IMREAVAIVPEGRRVFSRMTVEENLAMGGFFAERDQFQERIK-----WVYELFPRLHERR 131
Query: 516 VGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNR--- 572
+ GT +SGG++Q +AI RA++ PR+LLLDE + L + ++Q+ D I R
Sbjct: 132 IQRAGT-MSGGEQQMLAIGRALMSQPRLLLLDEPSLGL---APIIIQQIFDTIEQLREQG 187
Query: 573 -TTVIVAHRLS-TVRNADMIAVIHRGKIVEKGTHSKLV 608
T +V + ++ AD V+ G +V + T L+
Sbjct: 188 MTIFLVEQNANQALKLADRGYVLENGHVVLEDTGDALL 225
|
Length = 237 |
| >gnl|CDD|213230 cd03263, ABC_subfamily_A, ATP-binding cassette domain of the lipid transporters, subfamily A | Back alignment and domain information |
|---|
Score = 60.2 bits (147), Expect = 7e-10
Identities = 24/89 (26%), Positives = 44/89 (49%), Gaps = 2/89 (2%)
Query: 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHI 1102
+++ +++ Y V DL+L + G+ L+G +G+GK+T + +L P +G
Sbjct: 1 LQIRNLTKTYKKGTKPAV-DDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTA 59
Query: 1103 TLDGVEIQKLQLKWLRQQMGLVSQEPVLF 1131
++G I+ K RQ +G Q LF
Sbjct: 60 YINGYSIRT-DRKAARQSLGYCPQFDALF 87
|
The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. Length = 220 |
| >gnl|CDD|237456 PRK13641, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 61.0 bits (148), Expect = 7e-10
Identities = 45/158 (28%), Positives = 76/158 (48%), Gaps = 20/158 (12%)
Query: 1043 IELHHVSFKY-PSRP-DVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAG 1100
I+ +V + Y P P + + +++ ++ G VALVG +GSGKST++ P +G
Sbjct: 3 IKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSG 62
Query: 1101 HITLDGVEIQ----KLQLKWLRQQMGLVSQ--EPVLFNDTIRANIAYGK---GGDATEAE 1151
IT+ G I LK LR+++ LV Q E LF +T+ ++ +G G EA+
Sbjct: 63 TITIAGYHITPETGNKNLKKLRKKVSLVFQFPEAQLFENTVLKDVEFGPKNFGFSEDEAK 122
Query: 1152 IQA---------ASEMANAHKFICSLQQVRTSRLLLVM 1180
+A + ++ + F S Q+R + VM
Sbjct: 123 EKALKWLKKVGLSEDLISKSPFELSGGQMRRVAIAGVM 160
|
Length = 287 |
| >gnl|CDD|213202 cd03235, ABC_Metallic_Cations, ATP-binding cassette domain of the metal-type transporters | Back alignment and domain information |
|---|
Score = 59.9 bits (146), Expect = 8e-10
Identities = 23/83 (27%), Positives = 46/83 (55%), Gaps = 8/83 (9%)
Query: 1044 ELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHIT 1103
E+ ++ Y P V D++ +++ G+ +A+VG +G+GKST++ + P +G I
Sbjct: 1 EVEDLTVSYGGHP---VLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIR 57
Query: 1104 LDGVEIQKLQLKWLRQQMGLVSQ 1126
+ G ++K R+++G V Q
Sbjct: 58 VFGKPLEK-----ERKRIGYVPQ 75
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. Length = 213 |
| >gnl|CDD|184209 PRK13650, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 60.9 bits (148), Expect = 8e-10
Identities = 25/86 (29%), Positives = 52/86 (60%)
Query: 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHI 1102
IE+ +++FKY + D++ ++ G+ ++++G +GSGKST V L+ + ++G I
Sbjct: 5 IEVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQI 64
Query: 1103 TLDGVEIQKLQLKWLRQQMGLVSQEP 1128
+DG + + + +R ++G+V Q P
Sbjct: 65 IIDGDLLTEENVWDIRHKIGMVFQNP 90
|
Length = 279 |
| >gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 62.6 bits (153), Expect = 8e-10
Identities = 46/226 (20%), Positives = 93/226 (41%), Gaps = 28/226 (12%)
Query: 393 YPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKE 452
R + S + +G + G +G+G+S ++ I P +G +L++G ++
Sbjct: 266 KDRRGVTAV-KDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPASGRILLNGKDVLG 324
Query: 453 FQ--LQWIRKKIGLVSQEP-----VLFTGSIKDNIA----YGKDDATTEEIRVATELANA 501
+ R + V ++ VL S+ +N+ K + + A
Sbjct: 325 RLSPRERRRLGLAYVPEDRHGHGLVL-DLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFA 383
Query: 502 AKFIDKL---PQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESE 558
+ I++ D LSGG +Q++ +AR + + P +L+ + T LD +
Sbjct: 384 RELIEEFDVRAPSPDAPAR----SLSGGNQQKLILARELARRPDLLIAAQPTRGLDVGAI 439
Query: 559 KVVQEALDRIMVNRTTVIVAHRLST-----VRNADMIAVIHRGKIV 599
+ + E L + V++ +S + +D IAVI+ G+IV
Sbjct: 440 EFIHERLLELRDAGKAVLL---ISEDLDEILELSDRIAVIYEGRIV 482
|
Length = 501 |
| >gnl|CDD|131266 TIGR02211, LolD_lipo_ex, lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Score = 60.1 bits (146), Expect = 8e-10
Identities = 27/74 (36%), Positives = 45/74 (60%), Gaps = 4/74 (5%)
Query: 1057 DVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKL---Q 1113
D +V + ++L I G+ VA+VG SGSGKST++ LL +P +G + +G + KL +
Sbjct: 17 DTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNE 76
Query: 1114 LKWLR-QQMGLVSQ 1126
LR +++G + Q
Sbjct: 77 RAKLRNKKLGFIYQ 90
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina [Protein fate, Protein and peptide secretion and trafficking]. Length = 221 |
| >gnl|CDD|184594 PRK14264, PRK14264, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 60.6 bits (147), Expect = 1e-09
Identities = 36/99 (36%), Positives = 52/99 (52%), Gaps = 9/99 (9%)
Query: 1057 DVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDA-----GHITLDGVEIQK 1111
D + +++ I AL+G SG GKST + L R D G + LDG +I +
Sbjct: 57 DDHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQ 116
Query: 1112 --LQLKWLRQQMGLVSQEPVLFNDTIRANIAYG--KGGD 1146
+ L LR+++G+V Q P F +IR NI+YG K GD
Sbjct: 117 DGVNLVELRKRVGMVFQSPNPFPKSIRENISYGPRKHGD 155
|
Length = 305 |
| >gnl|CDD|213268 cd03301, ABC_MalK_N, The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Score = 58.8 bits (143), Expect = 2e-09
Identities = 31/101 (30%), Positives = 55/101 (54%), Gaps = 6/101 (5%)
Query: 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHI 1102
+EL +V+ ++ + DLNL I G+ V L+G SG GK+T + ++ +P +G I
Sbjct: 1 VELENVTKRFGNVT---ALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRI 57
Query: 1103 TLDGVEIQKLQLKWLRQQMGLVSQEPVLF-NDTIRANIAYG 1142
+ G ++ L K + + +V Q L+ + T+ NIA+G
Sbjct: 58 YIGGRDVTDLPPK--DRDIAMVFQNYALYPHMTVYDNIAFG 96
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. Length = 213 |
| >gnl|CDD|236523 PRK09452, potA, putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Score = 60.7 bits (148), Expect = 2e-09
Identities = 34/101 (33%), Positives = 57/101 (56%), Gaps = 6/101 (5%)
Query: 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHI 1102
+EL +S + + +V +L+L I G+ + L+G SG GK+TV+ L+ F PD+G I
Sbjct: 15 VELRGISKSFDGK---EVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRI 71
Query: 1103 TLDGVEIQKLQLKWLRQQMGLVSQEPVLF-NDTIRANIAYG 1142
LDG +I + + + + V Q LF + T+ N+A+G
Sbjct: 72 MLDGQDITHVPAE--NRHVNTVFQSYALFPHMTVFENVAFG 110
|
Length = 375 |
| >gnl|CDD|223488 COG0411, LivG, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 59.1 bits (144), Expect = 2e-09
Identities = 20/67 (29%), Positives = 39/67 (58%), Gaps = 1/67 (1%)
Query: 1058 VQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWL 1117
+ D++L++R G+ V L+G +G+GK+T+ +L+ FY P +G + G +I L
Sbjct: 17 LTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPH-R 75
Query: 1118 RQQMGLV 1124
++G+
Sbjct: 76 IARLGIA 82
|
Length = 250 |
| >gnl|CDD|234152 TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 60.8 bits (148), Expect = 2e-09
Identities = 32/104 (30%), Positives = 55/104 (52%), Gaps = 7/104 (6%)
Query: 1059 QVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLR 1118
+D++L ++ G+ V L+G SG GK+T++ ++ AG I G +I +L + +
Sbjct: 18 TALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQ--K 75
Query: 1119 QQMGLVSQEPVLF-NDTIRANIAYG---KGGDATEAEIQAASEM 1158
+ G+V Q LF N T+ NIAYG +G E + +E+
Sbjct: 76 RDYGIVFQSYALFPNLTVADNIAYGLKNRGMGRAEVA-ERVAEL 118
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely [Transport and binding proteins, Amino acids, peptides and amines]. Length = 353 |
| >gnl|CDD|226647 COG4181, COG4181, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 59.0 bits (143), Expect = 2e-09
Identities = 27/71 (38%), Positives = 45/71 (63%), Gaps = 1/71 (1%)
Query: 1043 IELHHVSFKYPS-RPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGH 1101
IE+HH+S ++ + + + L ++ G+TVA+VG SGSGKST++++L DP +G
Sbjct: 7 IEVHHLSKTVGQGEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGE 66
Query: 1102 ITLDGVEIQKL 1112
+ L G + KL
Sbjct: 67 VRLLGQPLHKL 77
|
Length = 228 |
| >gnl|CDD|213187 cd03220, ABC_KpsT_Wzt, ATP-binding cassette component of polysaccharide transport system | Back alignment and domain information |
|---|
Score = 59.1 bits (144), Expect = 2e-09
Identities = 24/83 (28%), Positives = 42/83 (50%), Gaps = 19/83 (22%)
Query: 1043 IELHHVSFKYPS-------------------RPDVQVFRDLNLKIRAGKTVALVGESGSG 1083
IEL +VS YP+ + +D++ ++ G+ + L+G +G+G
Sbjct: 1 IELENVSKSYPTYKGGSSSLKKLGILGRKGEVGEFWALKDVSFEVPRGERIGLIGRNGAG 60
Query: 1084 KSTVVSLLQRFYDPDAGHITLDG 1106
KST++ LL Y PD+G +T+ G
Sbjct: 61 KSTLLRLLAGIYPPDSGTVTVRG 83
|
The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenza) and a cytoplasmic membrane protein MPA2. Length = 224 |
| >gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Score = 61.0 bits (149), Expect = 2e-09
Identities = 53/216 (24%), Positives = 94/216 (43%), Gaps = 43/216 (19%)
Query: 403 SGFSI----SISSGTTAALVGQSGSGKSTVIS-----LIERFYDPQAGEVLIDGINLKEF 453
+GF + G ++G +G GK+T + LI D + E D + LK F
Sbjct: 86 NGFKLYGLPIPKEGKVTGILGPNGIGKTTAVKILSGELIPNLGDYE-EEPSWDEV-LKRF 143
Query: 454 ---QLQ-WIRK----------KIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELA 499
+LQ + +K K V P +F G +++ + +E E+
Sbjct: 144 RGTELQNYFKKLYNGEIKVVHKPQYVDLIPKVFKGKVRELLK------KVDERGKLDEV- 196
Query: 500 NAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEK 559
+++L G++ ++ ++LSGG+ QR+AIA A+L+D DE TS LD
Sbjct: 197 -----VERL--GLENILDRDISELSGGELQRVAIAAALLRDADFYFFDEPTSYLDIRQRL 249
Query: 560 VVQEALDRIMVNRTTVIVAHRLSTVRNADMIA-VIH 594
V + + + ++V H L+ + D +A +H
Sbjct: 250 NVARLIRELAEGKYVLVVEHDLAVL---DYLADNVH 282
|
Length = 590 |
| >gnl|CDD|130254 TIGR01186, proV, glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Score = 59.9 bits (145), Expect = 3e-09
Identities = 34/85 (40%), Positives = 51/85 (60%), Gaps = 5/85 (5%)
Query: 1063 DLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKL---QLKWL-R 1118
D +L I G+ ++G SGSGKST V +L R +P AG I +DG I K +L+ + R
Sbjct: 11 DADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRR 70
Query: 1119 QQMGLVSQEPVLF-NDTIRANIAYG 1142
+++G+V Q+ LF + TI N + G
Sbjct: 71 KKIGMVFQQFALFPHMTILQNTSLG 95
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lactis functionally complements an E.coli proU mutant. The comlementing locus is similar to a opuA locus in B.sutlis. This clarifies the differences in nomenclature [Transport and binding proteins, Amino acids, peptides and amines]. Length = 363 |
| >gnl|CDD|172757 PRK14269, PRK14269, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 58.5 bits (141), Expect = 3e-09
Identities = 30/87 (34%), Positives = 49/87 (56%), Gaps = 3/87 (3%)
Query: 1059 QVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDA---GHITLDGVEIQKLQLK 1115
Q D+N++I K AL+G SG GKST + R D A G + ++G +++ +
Sbjct: 16 QALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVV 75
Query: 1116 WLRQQMGLVSQEPVLFNDTIRANIAYG 1142
LR+ +G+V Q+P +F +I NI+Y
Sbjct: 76 ALRKNVGMVFQQPNVFVKSIYENISYA 102
|
Length = 246 |
| >gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 60.8 bits (148), Expect = 3e-09
Identities = 37/113 (32%), Positives = 56/113 (49%), Gaps = 18/113 (15%)
Query: 1027 DPSDESGTILEDVKGEIELHHVSFKYPS-----RPDVQVFR---DLNLKIRAGKTVALVG 1078
P E +L +V+ + +P R V R ++L +R G+T+ LVG
Sbjct: 267 PPLPEDAPVLLEVED------LRVWFPIKGGFLRRTVDHLRAVDGISLTLRRGQTLGLVG 320
Query: 1079 ESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKL---QLKWLRQQMGLVSQEP 1128
ESGSGKST+ L R G I DG +I L +++ LR++M +V Q+P
Sbjct: 321 ESGSGKSTLGLALLRLIPSQ-GEIRFDGQDIDGLSRKEMRPLRRRMQVVFQDP 372
|
Length = 534 |
| >gnl|CDD|236689 PRK10419, nikE, nickel transporter ATP-binding protein NikE; Provisional | Back alignment and domain information |
|---|
Score = 58.9 bits (143), Expect = 3e-09
Identities = 32/107 (29%), Positives = 52/107 (48%), Gaps = 12/107 (11%)
Query: 1046 HHVSFKYPS------RPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDA 1099
+S Y V +++L +++G+TVAL+G SG GKST+ LL P
Sbjct: 7 SGLSHHYAHGGLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQ 66
Query: 1100 GHITLDGVEIQKL---QLKWLRQQMGLVSQEPV-LFN--DTIRANIA 1140
G+++ G + KL Q K R+ + +V Q+ + N T+R I
Sbjct: 67 GNVSWRGEPLAKLNRAQRKAFRRDIQMVFQDSISAVNPRKTVREIIR 113
|
Length = 268 |
| >gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular activities | Back alignment and domain information |
|---|
Score = 56.6 bits (136), Expect = 3e-09
Identities = 43/198 (21%), Positives = 65/198 (32%), Gaps = 60/198 (30%)
Query: 411 SGTTAALVGQSGSGKSTVISLIERFYDPQAGEVL-IDGINLKEFQLQWIRKKIGLVSQEP 469
G +VG GSGK+T+ + R P G V+ IDG ++ E L + I
Sbjct: 1 PGEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLII------- 53
Query: 470 VLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQ 529
VG SG +
Sbjct: 54 ----------------------------------------------VGGKKASGSGELRL 67
Query: 530 RIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMV------NRTTVIVAHRLST 583
R+A+A A P +L+LDE TS LDAE E ++ + ++ TVI+
Sbjct: 68 RLALALARKLKPDVLILDEITSLLDAEQEALLLLLEELRLLLLLKSEKNLTVILTTNDEK 127
Query: 584 VRNADMIAVIHRGKIVEK 601
++ +IV
Sbjct: 128 DLGPALLRRRFDRRIVLL 145
|
AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. Length = 148 |
| >gnl|CDD|213231 cd03264, ABC_drug_resistance_like, ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Score = 57.6 bits (140), Expect = 4e-09
Identities = 27/100 (27%), Positives = 58/100 (58%), Gaps = 6/100 (6%)
Query: 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHI 1102
++L +++ +Y + + ++L + G L+G +G+GK+T++ +L P +G I
Sbjct: 1 LQLENLTKRYGKK---RALDGVSLTLGPGMY-GLLGPNGAGKTTLMRILATLTPPSSGTI 56
Query: 1103 TLDGVEIQKLQLKWLRQQMGLVSQEPVLF-NDTIRANIAY 1141
+DG ++ K Q + LR+++G + QE ++ N T+R + Y
Sbjct: 57 RIDGQDVLK-QPQKLRRRIGYLPQEFGVYPNFTVREFLDY 95
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|236997 PRK11831, PRK11831, putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Score = 58.6 bits (142), Expect = 4e-09
Identities = 33/103 (32%), Positives = 58/103 (56%), Gaps = 7/103 (6%)
Query: 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHI 1102
+++ VSF +R + +F +++L + GK A++G SG GK+T++ L+ PD G I
Sbjct: 8 VDMRGVSF---TRGNRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEI 64
Query: 1103 TLDGVEIQKL---QLKWLRQQMGLVSQEPVLFND-TIRANIAY 1141
DG I + +L +R++M ++ Q LF D + N+AY
Sbjct: 65 LFDGENIPAMSRSRLYTVRKRMSMLFQSGALFTDMNVFDNVAY 107
|
Length = 269 |
| >gnl|CDD|215634 PLN03211, PLN03211, ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Score = 60.7 bits (147), Expect = 4e-09
Identities = 46/171 (26%), Positives = 86/171 (50%), Gaps = 26/171 (15%)
Query: 401 IFSGFSISISSGTTAALVGQSGSGKSTVISLIE-RFYDPQ-AGEVLIDGINLKEFQLQWI 458
I +G + S G A++G SGSGKST+++ + R G +L + + I
Sbjct: 83 ILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPT----KQI 138
Query: 459 RKKIGLVSQEPVLFTG-SIKDNIAY----------GKDDATTEEIRVATELANAAKFIDK 507
K+ G V+Q+ +L+ ++++ + + K + V +EL
Sbjct: 139 LKRTGFVTQDDILYPHLTVRETLVFCSLLRLPKSLTKQEKILVAESVISELG-------- 190
Query: 508 LPQGIDTLVGEHGTQ-LSGGQKQRIAIARAILKDPRILLLDEATSALDAES 557
L + +T++G + +SGG+++R++IA +L +P +L+LDE TS LDA +
Sbjct: 191 LTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDATA 241
|
Length = 659 |
| >gnl|CDD|226963 COG4604, CeuD, ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 58.1 bits (141), Expect = 5e-09
Identities = 28/85 (32%), Positives = 52/85 (61%), Gaps = 3/85 (3%)
Query: 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHI 1102
I + +VS Y ++ V D++L I G +++G +G+GKST++S++ R D+G I
Sbjct: 2 ITIENVSKSYGTKV---VLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEI 58
Query: 1103 TLDGVEIQKLQLKWLRQQMGLVSQE 1127
T+DG+E+ K L +++ ++ QE
Sbjct: 59 TIDGLELTSTPSKELAKKLSILKQE 83
|
Length = 252 |
| >gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Score = 59.7 bits (145), Expect = 6e-09
Identities = 32/103 (31%), Positives = 58/103 (56%), Gaps = 7/103 (6%)
Query: 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHI 1102
+ +S +Y V+V + ++ + AG+ AL+G +G+GKST++ ++ PD+G +
Sbjct: 12 LCARSISKQYSG---VEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTL 68
Query: 1103 TLDGVEIQKLQLKWLRQQMG--LVSQEPVLF-NDTIRANIAYG 1142
+ G +L Q+G LV QEP+LF N +++ NI +G
Sbjct: 69 EIGGNPCARLT-PAKAHQLGIYLVPQEPLLFPNLSVKENILFG 110
|
Length = 510 |
| >gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 59.6 bits (145), Expect = 7e-09
Identities = 34/90 (37%), Positives = 51/90 (56%), Gaps = 10/90 (11%)
Query: 1048 VSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKS-TVVSLLQRFYDPDAGH----I 1102
V+F V+ + ++ I AG+T+ALVGESGSGKS T +S+L P A H I
Sbjct: 14 VAFHQEGG-TVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSI 72
Query: 1103 TLDGVEIQKL---QLKWLR-QQMGLVSQEP 1128
DG ++ QL+ +R ++G++ QEP
Sbjct: 73 LFDGEDLLAASERQLRGVRGNKIGMIFQEP 102
|
Length = 534 |
| >gnl|CDD|224060 COG1137, YhbG, ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 57.6 bits (140), Expect = 7e-09
Identities = 30/103 (29%), Positives = 56/103 (54%), Gaps = 7/103 (6%)
Query: 1040 KGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDA 1099
+ +++ Y R +V D++L++ +G+ V L+G +G+GK+T ++ PD+
Sbjct: 2 MSTLVAENLAKSYKKR---KVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDS 58
Query: 1100 GHITLDGVEIQKLQLKWLRQQMGL--VSQEPVLFND-TIRANI 1139
G I LD +I KL + R ++G+ + QE +F T+ NI
Sbjct: 59 GKILLDDEDITKLPM-HKRARLGIGYLPQEASIFRKLTVEDNI 100
|
Length = 243 |
| >gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Score = 59.4 bits (145), Expect = 7e-09
Identities = 55/213 (25%), Positives = 96/213 (45%), Gaps = 36/213 (16%)
Query: 387 RDVYFSYPARPNEQIFSGFSISISSGTTAA-----LVGQSGSGKSTVISLIERFYDPQAG 441
R+ YP + FS+ + G +VG +G GK+T L+ P G
Sbjct: 337 RETLVEYPDL--TKKLGDFSLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEG 394
Query: 442 EVLIDGINLK-EFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELAN 500
EV + LK ++ Q+I+ + G+++D + DD + + +E+
Sbjct: 395 EVDPE---LKISYKPQYIKPD----------YDGTVEDLLRSITDDLGSSYYK--SEIIK 439
Query: 501 AAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKV 560
P ++ L+ ++ LSGG+ QR+AIA + +D + LLDE ++ LD E
Sbjct: 440 --------PLQLERLLDKNVKDLSGGELQRVAIAACLSRDADLYLLDEPSAHLDVEQRLA 491
Query: 561 VQEALDRIMVNR--TTVIVAHRLSTVRNADMIA 591
V +A+ RI R T ++V H + + D I+
Sbjct: 492 VAKAIRRIAEEREATALVVDHDIYMI---DYIS 521
|
Length = 590 |
| >gnl|CDD|183063 PRK11264, PRK11264, putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Score = 57.5 bits (139), Expect = 8e-09
Identities = 37/114 (32%), Positives = 59/114 (51%), Gaps = 13/114 (11%)
Query: 1059 QVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEI--------Q 1110
V ++L+++ G+ VA++G SGSGK+T++ + P+AG I + + I Q
Sbjct: 17 TVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQ 76
Query: 1111 KLQLKWLRQQMGLVSQEPVLF-NDTIRANIAYG----KGGDATEAEIQAASEMA 1159
K ++ LRQ +G V Q LF + T+ NI G KG EA +A +A
Sbjct: 77 KGLIRQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATARARELLA 130
|
Length = 250 |
| >gnl|CDD|225265 COG2401, COG2401, ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only] | Back alignment and domain information |
|---|
Score = 59.5 bits (144), Expect = 8e-09
Identities = 50/206 (24%), Positives = 89/206 (43%), Gaps = 32/206 (15%)
Query: 407 ISISSGTTAALVGQSGSGKSTVISLIERF--------YDPQAGEVLIDGINLKEFQLQWI 458
+ I G A+VGQSG+GK+T++ +I Y P +G+V + + + +
Sbjct: 404 LEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKV-----EVPKNTVSAL 458
Query: 459 RKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGE 518
EP +I +++ + T ++ A E+ N A D L
Sbjct: 459 IPG----EYEPEFGEVTILEHLR-----SKTGDLNAAVEILNRAGLSDA------VLYRR 503
Query: 519 HGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRT-TVIV 577
++LS GQK+R +A+ + + P +LL+DE + LD + V + + T+IV
Sbjct: 504 KFSELSTGQKERAKLAKLLAERPNVLLIDEFAAHLDELTAVRVARKISELAREAGITLIV 563
Query: 578 AHRLSTVRNA---DMIAVIHRGKIVE 600
V NA D + ++ GK+
Sbjct: 564 VTHRPEVGNALRPDTLILVGYGKVPV 589
|
Length = 593 |
| >gnl|CDD|184597 PRK14270, PRK14270, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 57.3 bits (138), Expect = 9e-09
Identities = 38/111 (34%), Positives = 60/111 (54%), Gaps = 10/111 (9%)
Query: 1039 VKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYD-- 1096
+K ++E +++ Y + Q D+NL I K AL+G SG GKST + L R D
Sbjct: 1 MKIKMESKNLNLWYGEK---QALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLI 57
Query: 1097 PDA---GHITLDGVEI--QKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYG 1142
+ G + LDG I + + + LR+++G+V Q+P F +I N+AYG
Sbjct: 58 SNVKIEGEVLLDGKNIYDKDVDVVELRKRVGMVFQKPNPFPMSIYDNVAYG 108
|
Length = 251 |
| >gnl|CDD|236755 PRK10762, PRK10762, D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Score = 59.2 bits (144), Expect = 9e-09
Identities = 70/248 (28%), Positives = 118/248 (47%), Gaps = 31/248 (12%)
Query: 397 PNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINL-----K 451
P + SG ++++ G ALVG++G+GKST++ ++ Y AG +L G + K
Sbjct: 15 PGVKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPK 74
Query: 452 EFQLQWIRKKIGLVSQEPVLFTG-SIKDNIAYGKDDATT-EEIRVATELANAAKFIDKL- 508
Q IG++ QE L +I +NI G++ I A A K + +L
Sbjct: 75 SSQEA----GIGIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLN 130
Query: 509 -PQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSAL-DAESE---KVVQE 563
D LVGE LS G++Q + IA+ + + +++++DE T AL D E+E +V++E
Sbjct: 131 LRFSSDKLVGE----LSIGEQQMVEIAKVLSFESKVIIMDEPTDALTDTETESLFRVIRE 186
Query: 564 ALDRIMVNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVEDPEGAYSQLIRLQ 622
+ R V ++HRL + D + V G+ + + + L ED LI +
Sbjct: 187 LKSQ---GRGIVYISHRLKEIFEICDDVTVFRDGQFIAEREVADLTED------SLIEMM 237
Query: 623 EANKESEQ 630
K +Q
Sbjct: 238 VGRKLEDQ 245
|
Length = 501 |
| >gnl|CDD|172732 PRK14244, PRK14244, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 56.8 bits (137), Expect = 1e-08
Identities = 31/91 (34%), Positives = 49/91 (53%), Gaps = 7/91 (7%)
Query: 1059 QVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYD--PD---AGHITLDGVEI--QK 1111
Q+ D+NL I + A +G SG GKST + R D P+ G + +DG+++
Sbjct: 19 QILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVD 78
Query: 1112 LQLKWLRQQMGLVSQEPVLFNDTIRANIAYG 1142
+ LR ++G+V Q+P F +I N+AYG
Sbjct: 79 TNVVLLRAKVGMVFQKPNPFPKSIYDNVAYG 109
|
Length = 251 |
| >gnl|CDD|226360 COG3840, ThiQ, ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 56.6 bits (137), Expect = 1e-08
Identities = 32/101 (31%), Positives = 52/101 (51%), Gaps = 8/101 (7%)
Query: 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHI 1102
+ L V F Y P +L + AG+ VA++G SG+GKST+++L+ F P +G I
Sbjct: 2 LALDDVRFSYGHLP-----MRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEI 56
Query: 1103 TLDGVEIQKLQLKWLRQQMGLVSQEPVLFND-TIRANIAYG 1142
++GV+ + + ++ QE LF T+ NI G
Sbjct: 57 LINGVDH--TASPPAERPVSMLFQENNLFAHLTVAQNIGLG 95
|
Length = 231 |
| >gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Score = 59.5 bits (144), Expect = 1e-08
Identities = 32/99 (32%), Positives = 57/99 (57%), Gaps = 2/99 (2%)
Query: 1041 GEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAG 1100
G++++ ++ KY V +DL+ + G+ V L+G +GSGKST++S L R + G
Sbjct: 1216 GQMDVQGLTAKYTEAGR-AVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLSTE-G 1273
Query: 1101 HITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANI 1139
I +DGV + L+ R+ G++ Q+ +F+ T R N+
Sbjct: 1274 EIQIDGVSWNSVTLQTWRKAFGVIPQKVFIFSGTFRKNL 1312
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se [Transport and binding proteins, Anions]. Length = 1490 |
| >gnl|CDD|184205 PRK13646, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 57.9 bits (140), Expect = 1e-08
Identities = 30/90 (33%), Positives = 51/90 (56%), Gaps = 6/90 (6%)
Query: 1059 QVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEI----QKLQL 1114
Q D+N + GK A+VG++GSGKST++ + P G +T+D + I + +
Sbjct: 21 QAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYI 80
Query: 1115 KWLRQQMGLVSQ--EPVLFNDTIRANIAYG 1142
+ +R+++G+V Q E LF DT+ I +G
Sbjct: 81 RPVRKRIGMVFQFPESQLFEDTVEREIIFG 110
|
Length = 286 |
| >gnl|CDD|183056 PRK11248, tauB, taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 57.0 bits (138), Expect = 1e-08
Identities = 30/125 (24%), Positives = 60/125 (48%), Gaps = 23/125 (18%)
Query: 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHI 1102
+++ H+ Y +P D+NL + +G+ + ++G SG GK+T+++L+ F G I
Sbjct: 2 LQISHLYADYGGKP---ALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSI 58
Query: 1103 TLDGVEIQKLQLKWLRQQMGLVSQEPVLFND-------TIRANIAYG--KGGDATEAEIQ 1153
TLDG ++ G ++ V+F + ++ N+A+G G ++
Sbjct: 59 TLDGKPVE-----------GPGAERGVVFQNEGLLPWRNVQDNVAFGLQLAGVEKMQRLE 107
Query: 1154 AASEM 1158
A +M
Sbjct: 108 IAHQM 112
|
Length = 255 |
| >gnl|CDD|213199 cd03232, ABCG_PDR_domain2, Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 56.1 bits (136), Expect = 1e-08
Identities = 48/209 (22%), Positives = 81/209 (38%), Gaps = 56/209 (26%)
Query: 400 QIFSGFSISISSGTTAALVGQSGSGKSTV---------ISLIERFYDPQAGEVLIDGINL 450
Q+ + S + GT AL+G+SG+GK+T+ +I GE+LI+G L
Sbjct: 21 QLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVIT-------GEILINGRPL 73
Query: 451 KEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQ 510
+ ++ G V Q+ V +R A +
Sbjct: 74 DKN----FQRSTGYVEQQDVHSPNL---------------TVREALRFSAL--------- 105
Query: 511 GIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRI-M 569
L G LS Q++R+ I + P IL LDE TS LD+++ + L ++
Sbjct: 106 ----LRG-----LSVEQRKRLTIGVELAAKPSILFLDEPTSGLDSQAAYNIVRFLKKLAD 156
Query: 570 VNRTTVIVAHRLSTV--RNADMIAVIHRG 596
+ + H+ S D + ++ RG
Sbjct: 157 SGQAILCTIHQPSASIFEKFDRLLLLKRG 185
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 192 |
| >gnl|CDD|236729 PRK10636, PRK10636, putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 59.0 bits (143), Expect = 1e-08
Identities = 58/209 (27%), Positives = 97/209 (46%), Gaps = 41/209 (19%)
Query: 401 IFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV-LIDGINLKEF---QLQ 456
I +++ G+ L+G++G+GKST+I L+ P +GE+ L GI L F QL+
Sbjct: 327 ILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAKGIKLGYFAQHQLE 386
Query: 457 WIRKKIG----LVSQEPVLFTGSIKDNI-AYG-KDDATTEEIRVATELANAAKFIDKLPQ 510
++R L P ++D + +G + D TEE R
Sbjct: 387 FLRADESPLQHLARLAPQELEQKLRDYLGGFGFQGDKVTEETR----------------- 429
Query: 511 GIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMV 570
+ SGG+K R+ +A + + P +LLLDE T+ LD + + + EAL I
Sbjct: 430 -----------RFSGGEKARLVLALIVWQRPNLLLLDEPTNHLDLDMRQALTEAL--IDF 476
Query: 571 NRTTVIVAHRLSTVRN-ADMIAVIHRGKI 598
V+V+H +R+ D + ++H GK+
Sbjct: 477 EGALVVVSHDRHLLRSTTDDLYLVHDGKV 505
|
Length = 638 |
| >gnl|CDD|172741 PRK14253, PRK14253, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 56.4 bits (136), Expect = 2e-08
Identities = 34/90 (37%), Positives = 51/90 (56%), Gaps = 6/90 (6%)
Query: 1059 QVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDA-----GHITLDGVEI-QKL 1112
Q + +NL I A + AL+G SG GKST++ L R D G +T+DG +I +
Sbjct: 17 QALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNI 76
Query: 1113 QLKWLRQQMGLVSQEPVLFNDTIRANIAYG 1142
+ LR ++G+V Q+P F +I N+AYG
Sbjct: 77 DVADLRIKVGMVFQKPNPFPMSIYENVAYG 106
|
Length = 249 |
| >gnl|CDD|226968 COG4615, PvdE, ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 58.3 bits (141), Expect = 2e-08
Identities = 42/127 (33%), Positives = 62/127 (48%), Gaps = 10/127 (7%)
Query: 1038 DVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDP 1097
D K +EL +V F Y + +NL I+ G+ V L+G +GSGKST+ LL Y P
Sbjct: 319 DWKT-LELRNVRFAYQ--DNAFHVGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQP 375
Query: 1098 DAGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASE 1157
+G I LDG + QL+ R+ V + LF+ + G G A+ I+ +
Sbjct: 376 QSGEILLDGKPVSAEQLEDYRKLFSAVFSDYHLFDQLL------GPEGKASPQLIEKWLQ 429
Query: 1158 -MANAHK 1163
+ AHK
Sbjct: 430 RLELAHK 436
|
Length = 546 |
| >gnl|CDD|233206 TIGR00954, 3a01203, Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei | Back alignment and domain information |
|---|
Score = 58.6 bits (142), Expect = 2e-08
Identities = 53/221 (23%), Positives = 88/221 (39%), Gaps = 31/221 (14%)
Query: 372 TKGKILDDIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISL 431
+G + G I+ ++ P + + S + SG + G +G GKS++ +
Sbjct: 441 GRGIVEYQDNG-IKFENIPLVTPN--GDVLIESLSFEVPSGNNLLICGPNGCGKSSLFRI 497
Query: 432 IERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAY--------- 482
+ + G + + K+ V Q P + G+++D I Y
Sbjct: 498 LGELWPVYGGRLTKPA-----------KGKLFYVPQRPYMTLGTLRDQIIYPDSSEDMKR 546
Query: 483 -GKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDP 541
G D E+I +L + I + G V + LSGG+KQRIA+AR P
Sbjct: 547 RGLSDKDLEQILDNVQLTH----ILEREGGWSA-VQDWMDVLSGGEKQRIAMARLFYHKP 601
Query: 542 RILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLS 582
+ +LDE TSA+ + E + T V+HR S
Sbjct: 602 QFAILDECTSAVSVDVEGYMYRLCRE--FGITLFSVSHRKS 640
|
[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 659 |
| >gnl|CDD|184127 PRK13540, PRK13540, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 55.3 bits (133), Expect = 2e-08
Identities = 51/197 (25%), Positives = 88/197 (44%), Gaps = 38/197 (19%)
Query: 391 FSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINL 450
F Y +P + S + +G L G +G+GK+T++ LI +P+ GE+L + ++
Sbjct: 9 FDYHDQP---LLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSI 65
Query: 451 K------EFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTE-EIRVATELANAAK 503
K + QL ++ + G+ P L ++++N Y + I L +
Sbjct: 66 KKDLCTYQKQLCFVGHRSGI---NPYL---TLRENCLYDIHFSPGAVGITELCRLFSLEH 119
Query: 504 FIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQE 563
ID P G+ LS GQK+++A+ R + ++ LLDE ALD +
Sbjct: 120 LID-YPCGL----------LSSGQKRQVALLRLWMSKAKLWLLDEPLVALD-------EL 161
Query: 564 ALDRIMVNRTTVIVAHR 580
+L I+ T I HR
Sbjct: 162 SLLTII----TKIQEHR 174
|
Length = 200 |
| >gnl|CDD|213264 cd03297, ABC_ModC_molybdenum_transporter, ATP-binding cassette domain of the molybdenum transport system | Back alignment and domain information |
|---|
Score = 55.0 bits (133), Expect = 3e-08
Identities = 29/88 (32%), Positives = 48/88 (54%), Gaps = 8/88 (9%)
Query: 1063 DLNLKIR---AGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEI----QKLQLK 1115
D LKI + + G SG+GKST++ + PD G I L+G + +K+ L
Sbjct: 12 DFTLKIDFDLNEEVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLP 71
Query: 1116 WLRQQMGLVSQEPVLF-NDTIRANIAYG 1142
++++GLV Q+ LF + +R N+A+G
Sbjct: 72 PQQRKIGLVFQQYALFPHLNVRENLAFG 99
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 214 |
| >gnl|CDD|184207 PRK13648, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 56.3 bits (136), Expect = 3e-08
Identities = 29/102 (28%), Positives = 51/102 (50%), Gaps = 3/102 (2%)
Query: 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHI 1102
I +VSF+Y S +D++ I G+ ++VG +GSGKST+ L+ +G I
Sbjct: 8 IVFKNVSFQYQSDASF-TLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEI 66
Query: 1103 TLDGVEIQKLQLKWLRQQMGLVSQEP--VLFNDTIRANIAYG 1142
+ I + LR+ +G+V Q P ++ ++A+G
Sbjct: 67 FYNNQAITDDNFEKLRKHIGIVFQNPDNQFVGSIVKYDVAFG 108
|
Length = 269 |
| >gnl|CDD|184196 PRK13636, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 56.0 bits (135), Expect = 3e-08
Identities = 27/104 (25%), Positives = 58/104 (55%), Gaps = 6/104 (5%)
Query: 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHI 1102
+++ +++ Y + +N+ I+ G+ A++G +G+GKST+ L P +G I
Sbjct: 6 LKVEELNYNYSD--GTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRI 63
Query: 1103 TLDG--VEIQKLQLKWLRQQMGLVSQEP--VLFNDTIRANIAYG 1142
DG ++ + L LR+ +G+V Q+P LF+ ++ ++++G
Sbjct: 64 LFDGKPIDYSRKGLMKLRESVGMVFQDPDNQLFSASVYQDVSFG 107
|
Length = 283 |
| >gnl|CDD|183044 PRK11231, fecE, iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 55.8 bits (135), Expect = 3e-08
Identities = 28/103 (27%), Positives = 52/103 (50%), Gaps = 4/103 (3%)
Query: 1042 EIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGH 1101
+ +++ Y ++ + DL+L + GK AL+G +G GKST++ R P +G
Sbjct: 2 TLRTENLTVGYGTKR---ILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGT 58
Query: 1102 ITLDGVEIQKLQLKWLRQQMGLVSQEPVLFND-TIRANIAYGK 1143
+ L I L + L +++ L+ Q + T+R +AYG+
Sbjct: 59 VFLGDKPISMLSSRQLARRLALLPQHHLTPEGITVRELVAYGR 101
|
Length = 255 |
| >gnl|CDD|237422 PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 55.9 bits (136), Expect = 3e-08
Identities = 22/79 (27%), Positives = 43/79 (54%), Gaps = 7/79 (8%)
Query: 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHI 1102
+E ++S + R + D++L +R G+ VA++G +G+GKST++ L PD+G +
Sbjct: 3 LEARNLSVRLGGR---TLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEV 59
Query: 1103 TLDGVEIQKLQLKWLRQQM 1121
L+G + W ++
Sbjct: 60 RLNGRPLA----DWSPAEL 74
|
Length = 258 |
| >gnl|CDD|213188 cd03221, ABCF_EF-3, ATP-binding cassette domain of elongation factor 3, subfamily F | Back alignment and domain information |
|---|
Score = 53.2 bits (129), Expect = 3e-08
Identities = 22/63 (34%), Positives = 37/63 (58%), Gaps = 3/63 (4%)
Query: 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHI 1102
IEL ++S Y + + +D++L I G + LVG +G+GKST++ L+ +PD G +
Sbjct: 1 IELENLSKTYGGKL---LLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIV 57
Query: 1103 TLD 1105
T
Sbjct: 58 TWG 60
|
Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. Length = 144 |
| >gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 57.5 bits (139), Expect = 3e-08
Identities = 53/233 (22%), Positives = 108/233 (46%), Gaps = 27/233 (11%)
Query: 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQ-AGE 442
+E R++ P+ + S S+ G + G G+G++ ++ + Y + G
Sbjct: 258 LEARNLTCWDVINPHRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGN 317
Query: 443 VLIDG--INLKEFQLQWIRKKIGLVSQE-------PVLFTGSIKDNIAYGKDDATTEEIR 493
V I+G ++++ Q IR I +V ++ P+L G NI + ++R
Sbjct: 318 VFINGKPVDIRNPA-QAIRAGIAMVPEDRKRHGIVPILGVGK---NITLSVLKSFCFKMR 373
Query: 494 VATELANAAKFIDKLPQGIDTLVGEHG------TQLSGGQKQRIAIARAILKDPRILLLD 547
+ +AA + + I L + +LSGG +Q+ +A+ +L +PR+L+LD
Sbjct: 374 I-----DAAAELQIIGSAIQRLKVKTASPFLPIGRLSGGNQQKAVLAKMLLTNPRVLILD 428
Query: 548 EATSALDAESEKVVQEALDRIMVNRTTVIV-AHRLSTVRN-ADMIAVIHRGKI 598
E T +D ++ + + ++++ +IV + L+ V +D + VI GK+
Sbjct: 429 EPTRGVDVGAKYEIYKLINQLAQEGVAIIVVSSELAEVLGLSDRVLVIGEGKL 481
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 500 |
| >gnl|CDD|130344 TIGR01277, thiQ, thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 54.9 bits (132), Expect = 4e-08
Identities = 26/79 (32%), Positives = 46/79 (58%), Gaps = 3/79 (3%)
Query: 1065 NLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMGLV 1124
+L + G+ VA++G SG+GKST+++L+ F +P +G I ++ L ++ + ++
Sbjct: 18 DLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSH--TGLAPYQRPVSML 75
Query: 1125 SQEPVLFND-TIRANIAYG 1142
QE LF T+R NI G
Sbjct: 76 FQENNLFAHLTVRQNIGLG 94
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found [Transport and binding proteins, Other]. Length = 213 |
| >gnl|CDD|213186 cd03219, ABC_Mj1267_LivG_branched, ATP-binding cassette component of branched chain amino acids transport system | Back alignment and domain information |
|---|
Score = 55.1 bits (134), Expect = 4e-08
Identities = 17/56 (30%), Positives = 32/56 (57%)
Query: 1058 VQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQ 1113
+ D++ +R G+ L+G +G+GK+T+ +L+ F P +G + DG +I L
Sbjct: 13 LVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLP 68
|
The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). Length = 236 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 56.9 bits (138), Expect = 4e-08
Identities = 43/204 (21%), Positives = 82/204 (40%), Gaps = 27/204 (13%)
Query: 996 ISQSSSFSSDSNKAKSAAASIFAIIDRESKIDPSDESGTILEDVKGE--------IELHH 1047
I + + +S + KAKS + + R ++ P +E + +E +
Sbjct: 267 IRRGKAAASKAKKAKSRIKRLEKLEARLAEERPVEEGKPLAFRFPPPGKRLGKLVLEFEN 326
Query: 1048 VSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGV 1107
VS Y + +DL+ +I G +A+VG +G+GKST++ LL P +G + +
Sbjct: 327 VSKGYD--GGRLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVG-- 382
Query: 1108 EIQKLQLKWLRQ-QMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMAN-----A 1161
+ +++ + Q + L + VL + + D E E++A
Sbjct: 383 --ETVKIGYFDQHRDELDPDKTVL--EELSEG-----FPDGDEQEVRAYLGRFGFTGEDQ 433
Query: 1162 HKFICSLQQVRTSRLLLVMIPWLE 1185
K + L +RLLL +
Sbjct: 434 EKPVGVLSGGEKARLLLAKLLLQP 457
|
Length = 530 |
| >gnl|CDD|213265 cd03298, ABC_ThiQ_thiamine_transporter, ATP-binding cassette domain of the thiamine transport system | Back alignment and domain information |
|---|
Score = 54.4 bits (131), Expect = 5e-08
Identities = 29/101 (28%), Positives = 51/101 (50%), Gaps = 8/101 (7%)
Query: 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHI 1102
+ L + F Y +P +L G+ A+VG SGSGKST+++L+ F P +G +
Sbjct: 1 VRLDKIRFSYGEQP-----MHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRV 55
Query: 1103 TLDGVEIQKLQLKWLRQQMGLVSQEPVLFND-TIRANIAYG 1142
++GV++ + + ++ QE LF T+ N+ G
Sbjct: 56 LINGVDVTAAPPA--DRPVSMLFQENNLFAHLTVEQNVGLG 94
|
Part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Score = 56.9 bits (138), Expect = 5e-08
Identities = 47/217 (21%), Positives = 93/217 (42%), Gaps = 45/217 (20%)
Query: 402 FSGFSISI-SSGTTAALVGQSGSGKSTVISLIE--------RFYDPQAGEVLIDGINLKE 452
F + + G ++G +G GKST + ++ R+ DP + + +I E
Sbjct: 89 FKLYRLPTPRPGKVVGILGPNGIGKSTALKILAGELKPNLGRYEDPPSWDEVIKRFRGTE 148
Query: 453 FQLQWIRK----------KIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAA 502
Q + +K K V P + G + E ++ E
Sbjct: 149 LQ-NYFKKLYEGELRAVHKPQYVDLIPKVVKGKVG------------ELLKKVDERGKFD 195
Query: 503 KFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESE---- 558
+ +++L G++ ++ ++LSGG+ QR+AIA A+L+D + DE +S LD
Sbjct: 196 EVVERL--GLENVLDRDVSELSGGELQRVAIAAALLRDADVYFFDEPSSYLDIRQRLNAA 253
Query: 559 KVVQEALDRIMVNRTTVIVAHRLSTVRNADMIA-VIH 594
+V++E + + ++V H L+ + D ++ +H
Sbjct: 254 RVIRELAED---GKYVIVVEHDLAVL---DYLSDFVH 284
|
Length = 591 |
| >gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 56.7 bits (137), Expect = 5e-08
Identities = 29/103 (28%), Positives = 56/103 (54%), Gaps = 5/103 (4%)
Query: 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHI 1102
I + + + V + +NL + G+ AL+GE+G+GKST++ +L ++P G I
Sbjct: 6 ISMAGIGKSFGP---VHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTI 62
Query: 1103 TLDGVEIQKLQLKWLRQQ-MGLVSQEPVLFND-TIRANIAYGK 1143
T++ + KL K Q +G++ QE + ++ T+ N+ G+
Sbjct: 63 TINNINYNKLDHKLAAQLGIGIIYQELSVIDELTVLENLYIGR 105
|
Length = 510 |
| >gnl|CDD|131197 TIGR02142, modC_ABC, molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 55.9 bits (135), Expect = 6e-08
Identities = 27/85 (31%), Positives = 45/85 (52%), Gaps = 5/85 (5%)
Query: 1063 DLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEI----QKLQLKWLR 1118
D + + A+ G SGSGK+T++ L+ PD G I L+G + + + L +
Sbjct: 15 DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEK 74
Query: 1119 QQMGLVSQEPVLFND-TIRANIAYG 1142
+++G V QE LF ++R N+ YG
Sbjct: 75 RRIGYVFQEARLFPHLSVRGNLRYG 99
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter [Transport and binding proteins, Anions]. Length = 354 |
| >gnl|CDD|184202 PRK13642, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 55.1 bits (132), Expect = 6e-08
Identities = 29/102 (28%), Positives = 56/102 (54%), Gaps = 2/102 (1%)
Query: 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHI 1102
+E+ ++ FKY DV ++ I G+ V+++G++GSGKST L+ ++ G +
Sbjct: 5 LEVENLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKV 64
Query: 1103 TLDGVEIQKLQLKWLRQQMGLVSQEP--VLFNDTIRANIAYG 1142
+DG + + LR+++G+V Q P T+ ++A+G
Sbjct: 65 KIDGELLTAENVWNLRRKIGMVFQNPDNQFVGATVEDDVAFG 106
|
Length = 277 |
| >gnl|CDD|182336 PRK10253, PRK10253, iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 55.0 bits (132), Expect = 6e-08
Identities = 29/85 (34%), Positives = 48/85 (56%), Gaps = 1/85 (1%)
Query: 1060 VFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQ 1119
V +L ++I G A++G +G GKST++ L R P GH+ LDG IQ K + +
Sbjct: 22 VAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVAR 81
Query: 1120 QMGLVSQEPVLFND-TIRANIAYGK 1143
++GL++Q D T++ +A G+
Sbjct: 82 RIGLLAQNATTPGDITVQELVARGR 106
|
Length = 265 |
| >gnl|CDD|184204 PRK13645, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 55.0 bits (132), Expect = 7e-08
Identities = 40/126 (31%), Positives = 65/126 (51%), Gaps = 14/126 (11%)
Query: 1038 DVKGEIELHHVSFKYPSRPDVQVFRDLN---LKIRAGKTVALVGESGSGKSTVVSLLQRF 1094
D +I L +VS+ Y + + F+ LN L + K ++G +GSGKST++ L
Sbjct: 2 DFSKDIILDNVSYTYAKKTPFE-FKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGL 60
Query: 1095 YDPDAGHITLDGVEI----QKL-QLKWLRQQMGLVSQEP--VLFNDTIRANIAYGK---G 1144
+ G + I +K+ ++K LR+++GLV Q P LF +TI +IA+G G
Sbjct: 61 IISETGQTIVGDYAIPANLKKIKEVKRLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNLG 120
Query: 1145 GDATEA 1150
+ EA
Sbjct: 121 ENKQEA 126
|
Length = 289 |
| >gnl|CDD|182561 PRK10575, PRK10575, iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 54.8 bits (132), Expect = 8e-08
Identities = 48/161 (29%), Positives = 73/161 (45%), Gaps = 20/161 (12%)
Query: 1045 LHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITL 1104
L +VSF+ P R + L+L AGK L+G +GSGKST++ +L R P G I L
Sbjct: 14 LRNVSFRVPGRTLLH---PLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILL 70
Query: 1105 DGVEIQKLQLK-WLRQQMGLVSQEPVLFNDTIRANI---------AYGKGGDATEAEIQA 1154
D ++ K + R+ L Q P T+R + A G+ G A +++
Sbjct: 71 DAQPLESWSSKAFARKVAYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEE 130
Query: 1155 ASEMAN----AHKFICSLQQVRTSRLLLVMIPWLESEDSNC 1191
A + AH+ + SL R + M L ++DS C
Sbjct: 131 AISLVGLKPLAHRLVDSLSGGERQRAWIAM---LVAQDSRC 168
|
Length = 265 |
| >gnl|CDD|130262 TIGR01194, cyc_pep_trnsptr, cyclic peptide transporter | Back alignment and domain information |
|---|
Score = 56.1 bits (135), Expect = 8e-08
Identities = 96/453 (21%), Positives = 165/453 (36%), Gaps = 51/453 (11%)
Query: 708 RRLAYLNKPEIPVILAGTIA-AMANGVILPIYGLLISSVIETFFKPPHELKKDSRFWALI 766
+ L + P I A +IA +A G+ + + + + I + L + S F
Sbjct: 6 GEILALLRSPFPAITAFSIALGLAGGLAI----IALLASINNAIHEENFLGQGSLFS--- 58
Query: 767 YLALGAGSFLLSPAQSYFFAVAGNKLIQRIRSMCFEKVIHMEVSWFDEPEHSSGAIGARL 826
+ L + L F A AG +I +R EK++ + D + + L
Sbjct: 59 FGGLCLLALLFRIGADIFPAYAGMHIIANLRIALCEKILGAPIEEIDR--RGAHNLIPLL 116
Query: 827 SADAASVRALVGDALARIVQNISTAAAGLIIAFTA--SWQLALIILVMLPLIGVSGYTQM 884
+ D + A I+ A IA+ A S + I + + +IG + +
Sbjct: 117 THDIDQINAF---LFIFPPIAIALAIFFFCIAYLAYLSVPMFAITISAI-IIGTAAQL-L 171
Query: 885 KFMKGFSADAKMKYEEASQVANDAVGSIRTVASFCAEEKVMQLYKKKCEAPMKTGIRQGM 944
FM GF + EE DA +F A+E ++++ + + I++
Sbjct: 172 AFMGGFKFFHAARDEE------DAFNEHTHAIAFGAKE--LKIHGIRRLSFAHGAIQESA 223
Query: 945 VS--------------GGGFGA-SFFLLF--AFYAASFYAGARLVEDGKATFSDVFKVFF 987
+ FG FFLL A +AA+ +A D A + V + +
Sbjct: 224 NNIADLHIIEILIFIAAENFGQLLFFLLIGCALFAAAMFA----SIDAAAISAFVLALLY 279
Query: 988 SLTMTAIGISQSSSFSSDSNKAKSAAASIFAIIDRESKIDPSDESGTILEDVK---GEIE 1044
+ +S + + A + E +++ SD +L IE
Sbjct: 280 IKGPLEMLVSALPILAQAQIACQRLADFGERFNEPEPELELSDADNVLLLAHDKSVDSIE 339
Query: 1045 LHHVSFKYPSRPDVQVFR--DLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHI 1102
L V + + F ++L+I G V +VGE+G GKST+ L Y P G I
Sbjct: 340 LKDVHMNPKAPEGSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQEGEI 399
Query: 1103 TLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTI 1135
LDG + R + + LF+D I
Sbjct: 400 LLDGAAVSADSRDDYRDLFSAIFADFHLFDDLI 432
|
This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake [Transport and binding proteins, Amino acids, peptides and amines, Transport and binding proteins, Other]. Length = 555 |
| >gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 55.9 bits (135), Expect = 8e-08
Identities = 53/220 (24%), Positives = 105/220 (47%), Gaps = 28/220 (12%)
Query: 400 QIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIR 459
++++ G AL+G++G+GKST++ ++ ++P G + I+ IN + +
Sbjct: 19 HALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLAA 78
Query: 460 K-KIGLVSQE-PVLFTGSIKDNIAYGK---------DDATTEEIRVATELANAAKFIDK- 507
+ IG++ QE V+ ++ +N+ G+ + E+RV AA + +
Sbjct: 79 QLGIGIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRV-----RAAMMLLRV 133
Query: 508 -LPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSAL-DAESEKVVQEAL 565
L +D V LS KQ + IA+ ++ D +++++DE TS+L + E + + +
Sbjct: 134 GLKVDLDEKVAN----LSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLF--LI 187
Query: 566 DRIMVNRTTVIV--AHRLSTVRN-ADMIAVIHRGKIVEKG 602
+ T IV +H+L+ +R D V+ G V G
Sbjct: 188 MNQLRKEGTAIVYISHKLAEIRRICDRYTVMKDGSSVCSG 227
|
Length = 510 |
| >gnl|CDD|215558 PLN03073, PLN03073, ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Score = 56.0 bits (135), Expect = 9e-08
Identities = 53/194 (27%), Positives = 76/194 (39%), Gaps = 49/194 (25%)
Query: 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 443
I D F YP P +F + I + A+VG +G GKST++ LI P +G V
Sbjct: 509 ISFSDASFGYPGGP--LLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTV 566
Query: 444 L--------------IDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATT 489
+DG++L S P+L+ + K A
Sbjct: 567 FRSAKVRMAVFSQHHVDGLDL---------------SSNPLLYMMRCFPGVPEQKLRAHL 611
Query: 490 EEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEA 549
V LA + LSGGQK R+A A+ K P ILLLDE
Sbjct: 612 GSFGVTGNLALQPMY-----------------TLSGGQKSRVAFAKITFKKPHILLLDEP 654
Query: 550 TSALDAES-EKVVQ 562
++ LD ++ E ++Q
Sbjct: 655 SNHLDLDAVEALIQ 668
|
Length = 718 |
| >gnl|CDD|213203 cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-binding cassette domain 1 of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 54.3 bits (131), Expect = 9e-08
Identities = 47/207 (22%), Positives = 88/207 (42%), Gaps = 44/207 (21%)
Query: 411 SGTTAALVGQSGSGKSTVISLIE--------RFYDPQAGEVLID---GINLKEF------ 453
G LVG +G GKST + ++ +F DP + ++D G L+ +
Sbjct: 25 EGQVLGLVGPNGIGKSTALKILAGKLKPNLGKFDDPPDWDEILDEFRGSELQNYFTKLLE 84
Query: 454 -QLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGI 512
++ I K V P G + + + + +E+ +D+L +
Sbjct: 85 GDVKVIVKP-QYVDLIPKAVKGKVGELLKKKDERGKLDEL------------VDQL--EL 129
Query: 513 DTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDA----ESEKVVQEALDRI 568
++ + QLSGG+ QR+AIA A+ +D DE +S LD + ++++E
Sbjct: 130 RHVLDRNIDQLSGGELQRVAIAAALARDADFYFFDEPSSYLDIKQRLNAARLIRE---LA 186
Query: 569 MVNRTTVIVAHRLSTVRNADMIA-VIH 594
+ ++V H L+ + D ++ IH
Sbjct: 187 EDDNYVLVVEHDLAVL---DYLSDYIH 210
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 255 |
| >gnl|CDD|172735 PRK14247, PRK14247, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 53.8 bits (129), Expect = 1e-07
Identities = 34/92 (36%), Positives = 54/92 (58%), Gaps = 6/92 (6%)
Query: 1057 DVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYD--PDA---GHITLDGVEIQK 1111
V+V +NL+I AL+G SGSGKST++ + R + P+A G + LDG +I K
Sbjct: 15 QVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFK 74
Query: 1112 LQLKWLRQQMGLVSQEP-VLFNDTIRANIAYG 1142
+ + LR+++ +V Q P + N +I N+A G
Sbjct: 75 MDVIELRRRVQMVFQIPNPIPNLSIFENVALG 106
|
Length = 250 |
| >gnl|CDD|213191 cd03224, ABC_TM1139_LivF_branched, ATP-binding cassette domain of branched-chain amino acid transporter | Back alignment and domain information |
|---|
Score = 53.6 bits (130), Expect = 1e-07
Identities = 28/107 (26%), Positives = 54/107 (50%), Gaps = 5/107 (4%)
Query: 1057 DVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQL-K 1115
Q+ ++L + G+ VAL+G +G+GK+T++ + P +G I DG +I L +
Sbjct: 12 KSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHE 71
Query: 1116 WLRQQMGLVSQEPVLFND-TIRANI---AYGKGGDATEAEIQAASEM 1158
R +G V + +F + T+ N+ AY + +A ++ E+
Sbjct: 72 RARAGIGYVPEGRRIFPELTVEENLLLGAYARRRAKRKARLERVYEL 118
|
LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. Length = 222 |
| >gnl|CDD|182778 PRK10851, PRK10851, sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 55.1 bits (133), Expect = 1e-07
Identities = 35/101 (34%), Positives = 58/101 (57%), Gaps = 6/101 (5%)
Query: 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHI 1102
IE+ ++ K R QV D++L I +G+ VAL+G SGSGK+T++ ++ +GHI
Sbjct: 3 IEIANIK-KSFGR--TQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHI 59
Query: 1103 TLDGVEIQKLQLKWLRQQMGLVSQEPVLFND-TIRANIAYG 1142
G ++ +L + +++G V Q LF T+ NIA+G
Sbjct: 60 RFHGTDVSRLHAR--DRKVGFVFQHYALFRHMTVFDNIAFG 98
|
Length = 353 |
| >gnl|CDD|131816 TIGR02769, nickel_nikE, nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Score = 54.4 bits (131), Expect = 1e-07
Identities = 33/110 (30%), Positives = 54/110 (49%), Gaps = 12/110 (10%)
Query: 1043 IELHHVSFKYPS------RPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYD 1096
+E+ V+ Y + + V +++L I G+TV L+G SG GKST+ LL
Sbjct: 3 LEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEK 62
Query: 1097 PDAGHITLDGVEIQKL---QLKWLRQQMGLVSQE-PVLFN--DTIRANIA 1140
P G ++ G ++ +L Q + R+ + LV Q+ P N T+R I
Sbjct: 63 PAQGTVSFRGQDLYQLDRKQRRAFRRDVQLVFQDSPSAVNPRMTVRQIIG 112
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase [Transport and binding proteins, Cations and iron carrying compounds]. Length = 265 |
| >gnl|CDD|131377 TIGR02324, CP_lyasePhnL, phosphonate C-P lyase system protein PhnL | Back alignment and domain information |
|---|
Score = 53.5 bits (129), Expect = 1e-07
Identities = 26/76 (34%), Positives = 44/76 (57%), Gaps = 8/76 (10%)
Query: 1059 QVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHI-------TLDGVEIQK 1111
V ++++L + AG+ VAL G SG+GKST++ L Y PD+G I +D +
Sbjct: 22 PVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQASP 81
Query: 1112 LQLKWLRQQ-MGLVSQ 1126
++ +R++ +G VSQ
Sbjct: 82 REVLEVRRKTIGYVSQ 97
|
Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. Length = 224 |
| >gnl|CDD|226929 COG4559, COG4559, ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 53.9 bits (130), Expect = 1e-07
Identities = 39/152 (25%), Positives = 74/152 (48%), Gaps = 20/152 (13%)
Query: 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHI 1102
I ++S+ S ++ ++L +R G+ +A++G +G+GKST++ L PD+G +
Sbjct: 2 IRAENLSY---SLAGRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEV 58
Query: 1103 TLDGVEIQKLQLKWLRQQMGLVSQEPVL-FNDTIRA-----NIAYGKGGDATEAEIQAAS 1156
TL+GV + + L + ++ Q L F T++ I + G + E E AA
Sbjct: 59 TLNGVPLNSWPPEELARHRAVLPQNSSLAFPFTVQEVVQMGRIPHRSGREPEEDERIAAQ 118
Query: 1157 EMAN------AHKFICSL-----QQVRTSRLL 1177
+A A + +L Q+V+ +R+L
Sbjct: 119 ALAATDLSGLAGRDYRTLSGGEQQRVQLARVL 150
|
Length = 259 |
| >gnl|CDD|213235 cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of the bacitracin-resistance transporter | Back alignment and domain information |
|---|
Score = 53.4 bits (129), Expect = 1e-07
Identities = 25/100 (25%), Positives = 52/100 (52%), Gaps = 6/100 (6%)
Query: 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHI 1102
++ + ++ Y + +V D++L ++ G+ +G +G+GK+T + ++ PD+G I
Sbjct: 1 LKTNDLTKTYGKK---RVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEI 57
Query: 1103 TLDGVEIQKLQLKWLRQQMGLVSQEPVLF-NDTIRANIAY 1141
T DG QK +++G + + P + N T R N+
Sbjct: 58 TFDGKSYQKNIEAL--RRIGALIEAPGFYPNLTARENLRL 95
|
The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. Length = 208 |
| >gnl|CDD|236554 PRK09536, btuD, corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 55.2 bits (133), Expect = 1e-07
Identities = 33/139 (23%), Positives = 61/139 (43%), Gaps = 14/139 (10%)
Query: 1054 SRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQ 1113
D V ++L +R G V LVG +G+GK+T++ + P AG + + G +++ L
Sbjct: 12 EFGDTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALS 71
Query: 1114 LKWLRQQMGLVSQEPVL-FNDTIRANIAYGK---------GGDATEAEIQAASEMANAHK 1163
+ +++ V Q+ L F +R + G+ + A ++ A E +
Sbjct: 72 ARAASRRVASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQ 131
Query: 1164 F----ICSLQQVRTSRLLL 1178
F + SL R+LL
Sbjct: 132 FADRPVTSLSGGERQRVLL 150
|
Length = 402 |
| >gnl|CDD|224057 COG1134, TagH, ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 53.8 bits (130), Expect = 1e-07
Identities = 16/64 (25%), Positives = 34/64 (53%)
Query: 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHI 1102
L ++ + +D++ +I G+ V ++G +G+GKST++ L+ Y P +G +
Sbjct: 25 KRLKGLAKGGRKVAEFWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKV 84
Query: 1103 TLDG 1106
+ G
Sbjct: 85 KVTG 88
|
Length = 249 |
| >gnl|CDD|106587 PRK13644, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 53.5 bits (128), Expect = 2e-07
Identities = 30/103 (29%), Positives = 56/103 (54%), Gaps = 5/103 (4%)
Query: 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHI 1102
I L +VS+ YP ++NL I+ G+ + ++G++GSGKST+ L P G +
Sbjct: 2 IRLENVSYSYPD--GTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKV 59
Query: 1103 TLDGVEIQKL-QLKWLRQQMGLVSQEP--VLFNDTIRANIAYG 1142
+ G++ +L+ +R+ +G+V Q P T+ ++A+G
Sbjct: 60 LVSGIDTGDFSKLQGIRKLVGIVFQNPETQFVGRTVEEDLAFG 102
|
Length = 274 |
| >gnl|CDD|183226 PRK11607, potG, putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 54.8 bits (132), Expect = 2e-07
Identities = 37/99 (37%), Positives = 58/99 (58%), Gaps = 5/99 (5%)
Query: 1063 DLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMG 1122
D++L I G+ AL+G SG GKST++ +L F P AG I LDGV++ + ++ +
Sbjct: 37 DVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLS--HVPPYQRPIN 94
Query: 1123 LVSQEPVLF-NDTIRANIAYG-KGGDATEAEIQA-ASEM 1158
++ Q LF + T+ NIA+G K +AEI + +EM
Sbjct: 95 MMFQSYALFPHMTVEQNIAFGLKQDKLPKAEIASRVNEM 133
|
Length = 377 |
| >gnl|CDD|236898 PRK11308, dppF, dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 53.8 bits (130), Expect = 2e-07
Identities = 25/64 (39%), Positives = 35/64 (54%), Gaps = 3/64 (4%)
Query: 1068 IRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEI---QKLQLKWLRQQMGLV 1124
+ GKT+A+VGESG GKST+ LL P G + G ++ K LRQ++ +V
Sbjct: 38 LERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKADPEAQKLLRQKIQIV 97
Query: 1125 SQEP 1128
Q P
Sbjct: 98 FQNP 101
|
Length = 327 |
| >gnl|CDD|172745 PRK14257, PRK14257, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 54.3 bits (130), Expect = 2e-07
Identities = 37/106 (34%), Positives = 53/106 (50%), Gaps = 8/106 (7%)
Query: 1044 ELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYD-----PD 1098
E+ + +F Y +R V DLNL I+ K A +G SG GKST + L + D
Sbjct: 82 EIRNFNFWYMNRTK-HVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSH 140
Query: 1099 AGHITLDGVEI--QKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYG 1142
G I G +K+ LR ++G+V Q+P F +I N+AYG
Sbjct: 141 EGEIYFLGTNTRSKKISSLELRTRIGMVFQKPTPFEMSIFDNVAYG 186
|
Length = 329 |
| >gnl|CDD|163585 TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 53.7 bits (129), Expect = 2e-07
Identities = 31/103 (30%), Positives = 51/103 (49%), Gaps = 4/103 (3%)
Query: 1042 EIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGH 1101
+ L VS+ R V +++ G L+G +GSGKST++ LL PDAG
Sbjct: 1 GLRLSRVSWSAGGRLIVD---GVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGT 57
Query: 1102 ITLDGVEIQKLQLKWLRQQMGLVSQE-PVLFNDTIRANIAYGK 1143
+ L GV++ L + +++ LV Q+ T+R +A G+
Sbjct: 58 VDLAGVDLHGLSRRARARRVALVEQDSDTAVPLTVRDVVALGR 100
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. Length = 256 |
| >gnl|CDD|213185 cd03218, ABC_YhbG, ATP-binding cassette component of YhbG transport system | Back alignment and domain information |
|---|
Score = 52.9 bits (128), Expect = 2e-07
Identities = 31/100 (31%), Positives = 56/100 (56%), Gaps = 7/100 (7%)
Query: 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHI 1102
+ ++S +Y R +V ++L ++ G+ V L+G +G+GK+T ++ PD+G I
Sbjct: 1 LRAENLSKRYGKR---KVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKI 57
Query: 1103 TLDGVEIQKLQLKWLRQQMGL--VSQEPVLFND-TIRANI 1139
LDG +I KL + R ++G+ + QE +F T+ NI
Sbjct: 58 LLDGQDITKLPMH-KRARLGIGYLPQEASIFRKLTVEENI 96
|
The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. Length = 232 |
| >gnl|CDD|213238 cd03271, ABC_UvrA_II, ATP-binding cassette domain II of the excision repair protein UvrA | Back alignment and domain information |
|---|
Score = 53.8 bits (130), Expect = 2e-07
Identities = 61/258 (23%), Positives = 98/258 (37%), Gaps = 72/258 (27%)
Query: 406 SISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIG-- 463
+ I G + G SGSGKS++I + Y A + + + I
Sbjct: 15 DVDIPLGVLTCVTGVSGSGKSSLI--NDTLYPALARRLHLKKEQPGNHDRIEGLEHIDKV 72
Query: 464 -LVSQEPV-------------LFTGSIKD----------------NIAY-GKD-----DA 487
++ Q P+ +F I++ + Y GK D
Sbjct: 73 IVIDQSPIGRTPRSNPATYTGVFD-EIRELFCEVCKGKRYNRETLEVRYKGKSIADVLDM 131
Query: 488 TTEEIRVATELANAAKFIDKLPQ---GIDTLV---------GEHGTQLSGGQKQRIAIAR 535
T EE A +F + +P+ + TL G+ T LSGG+ QRI +A+
Sbjct: 132 TVEE---------ALEFFENIPKIARKLQTLCDVGLGYIKLGQPATTLSGGEAQRIKLAK 182
Query: 536 AILKDPR---ILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVA-HRLSTVRNADMIA 591
+ K + +LDE T+ L K + E L R++ TV+V H L ++ AD I
Sbjct: 183 ELSKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRLVDKGNTVVVIEHNLDVIKCADWII 242
Query: 592 VI------HRGKIVEKGT 603
+ G++V GT
Sbjct: 243 DLGPEGGDGGGQVVASGT 260
|
Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases. Length = 261 |
| >gnl|CDD|237649 PRK14254, PRK14254, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 53.3 bits (128), Expect = 3e-07
Identities = 41/145 (28%), Positives = 68/145 (46%), Gaps = 11/145 (7%)
Query: 1006 SNKAKSAAASIFAIIDRESKIDPSDESGT-ILEDVKGEIELHHVSFKYPSRPDVQVFRDL 1064
+N ++ S +I + D +D SG + IE ++ Y D Q D+
Sbjct: 2 TNNEMTSDESSDGLITTTTATDTTDPSGDPAASSGETVIEARDLNVFYG---DEQALDDV 58
Query: 1065 NLKIRAGKTVALVGESGSGKSTVVSLLQRFYDP-DA----GHITLDGVEI--QKLQLKWL 1117
++ I + A++G SG GKST + + R D DA G +T G + + L
Sbjct: 59 SMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADVDPVAL 118
Query: 1118 RQQMGLVSQEPVLFNDTIRANIAYG 1142
R+++G+V Q+P F +I N+AYG
Sbjct: 119 RRRIGMVFQKPNPFPKSIYDNVAYG 143
|
Length = 285 |
| >gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily | Back alignment and domain information |
|---|
Score = 51.8 bits (125), Expect = 3e-07
Identities = 25/106 (23%), Positives = 56/106 (52%), Gaps = 9/106 (8%)
Query: 1042 EIELHHVSFKYPSRP---DVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLL--QRFYD 1096
+ +++ S P Q+ ++++ K + G+ A++G SG+GKST+++ L +R
Sbjct: 3 TLSFRNLTVTVKSSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGL 62
Query: 1097 PDAGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLF-NDTIRANIAY 1141
+G + ++G + L + R+ +G V Q+ +L T+R + +
Sbjct: 63 GVSGEVLING---RPLDKRSFRKIIGYVPQDDILHPTLTVRETLMF 105
|
ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. Length = 194 |
| >gnl|CDD|226631 COG4152, COG4152, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 53.5 bits (129), Expect = 3e-07
Identities = 23/116 (19%), Positives = 54/116 (46%), Gaps = 11/116 (9%)
Query: 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHI 1102
+E+ V+ + D + +++ ++ G+ L+G +G+GK+T ++ +P G I
Sbjct: 3 LEIEGVTKSFG---DKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEI 59
Query: 1103 TLDGVEIQKLQLKWLRQQMGLVSQEPVLFND-TIRANIAYG---KGGDATEAEIQA 1154
T +G + + + ++G + +E L+ T+ + Y KG E + +
Sbjct: 60 TWNGGPLSQEI----KNRIGYLPEERGLYPKMTVEDQLKYLAELKGMPKAEIQKKL 111
|
Length = 300 |
| >gnl|CDD|213233 cd03266, ABC_NatA_sodium_exporter, ATP-binding cassette domain of the Na+ transporter | Back alignment and domain information |
|---|
Score = 51.6 bits (124), Expect = 4e-07
Identities = 32/112 (28%), Positives = 57/112 (50%), Gaps = 8/112 (7%)
Query: 1047 HVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDG 1106
F+ + VQ ++ ++ G+ L+G +G+GK+T + +L +PDAG T+DG
Sbjct: 8 TKRFRDVKKT-VQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDG 66
Query: 1107 VEIQKLQLKWLRQQMGLVSQEPVLFND-TIRANIAY-----GKGGDATEAEI 1152
++ K + R+++G VS L++ T R N+ Y G GD A +
Sbjct: 67 FDVVKEPAE-ARRRLGFVSDSTGLYDRLTARENLEYFAGLYGLKGDELTARL 117
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein. Length = 218 |
| >gnl|CDD|184203 PRK13643, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 52.8 bits (126), Expect = 4e-07
Identities = 37/127 (29%), Positives = 72/127 (56%), Gaps = 11/127 (8%)
Query: 1043 IELHHVSFKY-PSRP-DVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAG 1100
I+ V++ Y P+ P + D++L+++ G AL+G +GSGKST++ L P G
Sbjct: 2 IKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEG 61
Query: 1101 HITLDGVEI----QKLQLKWLRQQMGLVSQEP--VLFNDTIRANIAYGK---GGDATEAE 1151
+T+ + + ++ ++K +R+++G+V Q P LF +T+ ++A+G G +AE
Sbjct: 62 KVTVGDIVVSSTSKQKEIKPVRKKVGVVFQFPESQLFEETVLKDVAFGPQNFGIPKEKAE 121
Query: 1152 IQAASEM 1158
AA ++
Sbjct: 122 KIAAEKL 128
|
Length = 288 |
| >gnl|CDD|184584 PRK14238, PRK14238, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 52.5 bits (126), Expect = 5e-07
Identities = 27/93 (29%), Positives = 44/93 (47%), Gaps = 7/93 (7%)
Query: 1057 DVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYD-----PDAGHITLDGVEI-- 1109
+ +++NL I + A++G SG GKST + L R + G I I
Sbjct: 36 EDHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFD 95
Query: 1110 QKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYG 1142
+ ++ LR +G+V Q+P F +I N+ YG
Sbjct: 96 KSYSVEELRTNVGMVFQKPNPFPKSIYDNVTYG 128
|
Length = 271 |
| >gnl|CDD|182829 PRK10908, PRK10908, cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Score = 51.8 bits (124), Expect = 5e-07
Identities = 39/122 (31%), Positives = 60/122 (49%), Gaps = 11/122 (9%)
Query: 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHI 1102
I HVS Y Q + + +R G+ L G SG+GKST++ L+ P AG I
Sbjct: 2 IRFEHVSKAYLG--GRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKI 59
Query: 1103 TLDGVEIQKL---QLKWLRQQMGLVSQEPVLFND-TIRANIAY-----GKGGDATEAEIQ 1153
G +I +L ++ +LR+Q+G++ Q+ L D T+ N+A G GD +
Sbjct: 60 WFSGHDITRLKNREVPFLRRQIGMIFQDHHLLMDRTVYDNVAIPLIIAGASGDDIRRRVS 119
Query: 1154 AA 1155
AA
Sbjct: 120 AA 121
|
Length = 222 |
| >gnl|CDD|183077 PRK11288, araG, L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 53.4 bits (129), Expect = 6e-07
Identities = 25/67 (37%), Positives = 40/67 (59%), Gaps = 3/67 (4%)
Query: 1044 ELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHIT 1103
+ +P V+ D++ RAG+ AL+GE+G+GKST++ +L Y PDAG I
Sbjct: 6 SFDGIGKTFPG---VKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSIL 62
Query: 1104 LDGVEIQ 1110
+DG E++
Sbjct: 63 IDGQEMR 69
|
Length = 501 |
| >gnl|CDD|184128 PRK13541, PRK13541, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 50.6 bits (121), Expect = 7e-07
Identities = 40/167 (23%), Positives = 68/167 (40%), Gaps = 20/167 (11%)
Query: 398 NEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQ--- 454
+ +F SI+ + G +G GKS+++ +I P +G + N+
Sbjct: 13 QKNLFD-LSITFLPSAITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKNCNINNIAKPY 71
Query: 455 LQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDT 514
+I +GL + V +N+ + EI + E AA KL
Sbjct: 72 CTYIGHNLGLKLEMTVF------ENLKF------WSEIYNSAETLYAAIHYFKL----HD 115
Query: 515 LVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVV 561
L+ E LS G ++ +AIAR I + LLDE + L E+ ++
Sbjct: 116 LLDEKCYSLSSGMQKIVAIARLIACQSDLWLLDEVETNLSKENRDLL 162
|
Length = 195 |
| >gnl|CDD|237646 PRK14237, PRK14237, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 51.6 bits (124), Expect = 9e-07
Identities = 27/93 (29%), Positives = 46/93 (49%), Gaps = 7/93 (7%)
Query: 1057 DVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDA-----GHITLDGVEIQK 1111
+ + ++++ K AL+G SGSGKST + L R D G I G++I +
Sbjct: 32 KKEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINR 91
Query: 1112 --LQLKWLRQQMGLVSQEPVLFNDTIRANIAYG 1142
+ + +R+ +G+V Q P F +I NI +
Sbjct: 92 KEINVYEMRKHIGMVFQRPNPFAKSIYENITFA 124
|
Length = 267 |
| >gnl|CDD|172739 PRK14251, PRK14251, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 51.6 bits (123), Expect = 9e-07
Identities = 31/96 (32%), Positives = 49/96 (51%), Gaps = 7/96 (7%)
Query: 1054 SRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYD--PD---AGHITLDGVE 1108
S + + ++L + AL+G SG GKST + L R D + G I +G
Sbjct: 13 SYGNYEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQN 72
Query: 1109 I--QKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYG 1142
I K+ L LR+++G+V Q+P F ++ N+AYG
Sbjct: 73 IYGSKMDLVELRKEVGMVFQQPTPFPFSVYDNVAYG 108
|
Length = 251 |
| >gnl|CDD|182221 PRK10070, PRK10070, glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 52.3 bits (125), Expect = 9e-07
Identities = 32/86 (37%), Positives = 50/86 (58%), Gaps = 5/86 (5%)
Query: 1062 RDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQ-- 1119
+D +L I G+ ++G SGSGKST+V LL R +P G + +DGV+I K+ LR+
Sbjct: 45 KDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVR 104
Query: 1120 --QMGLVSQEPVLF-NDTIRANIAYG 1142
++ +V Q L + T+ N A+G
Sbjct: 105 RKKIAMVFQSFALMPHMTVLDNTAFG 130
|
Length = 400 |
| >gnl|CDD|132302 TIGR03258, PhnT, 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Score = 52.3 bits (125), Expect = 9e-07
Identities = 29/105 (27%), Positives = 53/105 (50%), Gaps = 8/105 (7%)
Query: 1041 GEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDA- 1099
G I + H+ Y + V DL+L+I AG+ +AL+G+SG GK+T++ + F
Sbjct: 4 GGIRIDHLRVAYGAN---TVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGL 60
Query: 1100 -GHITLDGVEIQKLQLKWLRQQMGLVSQEPVLF-NDTIRANIAYG 1142
G I + ++ ++ + L+ Q LF + + N+A+G
Sbjct: 61 TGRIAIADRDLT--HAPPHKRGLALLFQNYALFPHLKVEDNVAFG 103
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. Length = 362 |
| >gnl|CDD|172749 PRK14261, PRK14261, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 51.0 bits (122), Expect = 1e-06
Identities = 30/91 (32%), Positives = 44/91 (48%), Gaps = 7/91 (7%)
Query: 1059 QVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYD--PDA---GHITLDGVEIQ--K 1111
D+ + I + AL+G SG GKST++ R D P G I +G I
Sbjct: 20 HALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSG 79
Query: 1112 LQLKWLRQQMGLVSQEPVLFNDTIRANIAYG 1142
+ LR+++G+V Q P F +I N+AYG
Sbjct: 80 ADVVALRRKIGMVFQRPNPFPKSIYENVAYG 110
|
Length = 253 |
| >gnl|CDD|172747 PRK14259, PRK14259, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 51.0 bits (122), Expect = 1e-06
Identities = 35/107 (32%), Positives = 56/107 (52%), Gaps = 10/107 (9%)
Query: 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYD-----P 1097
I L +V+ Y + V +++ I GK AL+G SG GKSTV+ L R D
Sbjct: 14 ISLQNVTISYGTFEAV---KNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCS 70
Query: 1098 DAGHITLDGVEIQKLQLK--WLRQQMGLVSQEPVLFNDTIRANIAYG 1142
G + DG ++ ++ +R+++G+V Q+P F +I NIA+G
Sbjct: 71 LKGRVLFDGTDLYDPRVDPVEVRRRIGMVFQQPNPFPKSIYENIAFG 117
|
Length = 269 |
| >gnl|CDD|131817 TIGR02770, nickel_nikD, nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Score = 50.8 bits (122), Expect = 1e-06
Identities = 26/70 (37%), Positives = 35/70 (50%), Gaps = 6/70 (8%)
Query: 1063 DLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDA----GHITLDGVEIQKLQLKWLR 1118
DLNL ++ G+ +ALVGESGSGKS + P G I LDG + L L
Sbjct: 4 DLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPL--LPLSIRG 61
Query: 1119 QQMGLVSQEP 1128
+ + + Q P
Sbjct: 62 RHIATIMQNP 71
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous [Transport and binding proteins, Cations and iron carrying compounds]. Length = 230 |
| >gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Score = 52.4 bits (126), Expect = 1e-06
Identities = 28/73 (38%), Positives = 41/73 (56%), Gaps = 4/73 (5%)
Query: 1059 QVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKL---QLK 1115
V ++++ +R G+T+ LVGESGSGKST L R G I DG + L QL
Sbjct: 300 VVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLI-NSQGEIWFDGQPLHNLNRRQLL 358
Query: 1116 WLRQQMGLVSQEP 1128
+R ++ +V Q+P
Sbjct: 359 PVRHRIQVVFQDP 371
|
Length = 529 |
| >gnl|CDD|213236 cd03269, ABC_putative_ATPase, ATP-binding cassette domain of an uncharacterized transporter | Back alignment and domain information |
|---|
Score = 50.0 bits (120), Expect = 1e-06
Identities = 16/64 (25%), Positives = 35/64 (54%), Gaps = 3/64 (4%)
Query: 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHI 1102
+E+ +V+ ++ V D++ + G+ L+G +G+GK+T + ++ PD+G +
Sbjct: 1 LEVENVTKRFG---RVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEV 57
Query: 1103 TLDG 1106
DG
Sbjct: 58 LFDG 61
|
This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 210 |
| >gnl|CDD|182528 PRK10535, PRK10535, macrolide transporter ATP-binding /permease protein; Provisional | Back alignment and domain information |
|---|
Score = 52.4 bits (126), Expect = 1e-06
Identities = 30/82 (36%), Positives = 48/82 (58%), Gaps = 4/82 (4%)
Query: 1043 IELHHVSFKYPS-RPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGH 1101
+EL + YPS V+V + ++L I AG+ VA+VG SGSGKST++++L P +G
Sbjct: 5 LELKDIRRSYPSGEEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGT 64
Query: 1102 ITLDGVEIQKL---QLKWLRQQ 1120
+ G ++ L L LR++
Sbjct: 65 YRVAGQDVATLDADALAQLRRE 86
|
Length = 648 |
| >gnl|CDD|227118 COG4778, PhnL, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 50.5 bits (121), Expect = 1e-06
Identities = 28/75 (37%), Positives = 42/75 (56%), Gaps = 8/75 (10%)
Query: 1060 VFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHI-------TLDGVEIQKL 1112
V R+++L + AG+ V L G SGSGKST++ L Y PD G I +D V +
Sbjct: 26 VLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQILVRHEGEWVDLVTAEPR 85
Query: 1113 QLKWLRQQ-MGLVSQ 1126
++ +R+ +G VSQ
Sbjct: 86 EVLEVRRTTIGYVSQ 100
|
Length = 235 |
| >gnl|CDD|236707 PRK10522, PRK10522, multidrug transporter membrane component/ATP-binding component; Provisional | Back alignment and domain information |
|---|
Score = 52.3 bits (126), Expect = 1e-06
Identities = 27/73 (36%), Positives = 39/73 (53%), Gaps = 12/73 (16%)
Query: 1042 EIELHHVSFKYPSR-----PDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYD 1096
+EL +V+F Y P +NL I+ G+ + L+G +GSGKST+ LL Y
Sbjct: 322 TLELRNVTFAYQDNGFSVGP-------INLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQ 374
Query: 1097 PDAGHITLDGVEI 1109
P +G I LDG +
Sbjct: 375 PQSGEILLDGKPV 387
|
Length = 547 |
| >gnl|CDD|162242 TIGR01187, potA, spermidine/putrescine ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 51.0 bits (122), Expect = 2e-06
Identities = 25/68 (36%), Positives = 40/68 (58%), Gaps = 3/68 (4%)
Query: 1076 LVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLF-NDT 1134
L+G SG GK+T++ LL F PD+G I LDG ++ + + + +V Q LF + T
Sbjct: 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDV--TNVPPHLRHINMVFQSYALFPHMT 58
Query: 1135 IRANIAYG 1142
+ N+A+G
Sbjct: 59 VEENVAFG 66
|
This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included) [Transport and binding proteins, Amino acids, peptides and amines]. Length = 325 |
| >gnl|CDD|172756 PRK14268, PRK14268, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 50.0 bits (119), Expect = 2e-06
Identities = 31/108 (28%), Positives = 59/108 (54%), Gaps = 10/108 (9%)
Query: 1042 EIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYD----- 1096
+I++ +++ Y + Q ++++++I AL+G SG GKST + L R D
Sbjct: 12 QIKVENLNLWYGEK---QALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNC 68
Query: 1097 PDAGHITLDGVEI--QKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYG 1142
G ++++G +I + + LR+ +G+V Q+P F +I N+AYG
Sbjct: 69 RIEGKVSIEGEDIYEPDVDVVELRKNVGMVFQKPNPFPMSIYDNVAYG 116
|
Length = 258 |
| >gnl|CDD|182980 PRK11124, artP, arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 50.0 bits (120), Expect = 2e-06
Identities = 24/91 (26%), Positives = 47/91 (51%), Gaps = 9/91 (9%)
Query: 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHI 1102
I+L+ ++ Y + Q D+ L G+T+ L+G SG+GKS+++ +L P +G +
Sbjct: 3 IQLNGINCFYGAH---QALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTL 59
Query: 1103 TLDG------VEIQKLQLKWLRQQMGLVSQE 1127
+ G ++ LR+ +G+V Q+
Sbjct: 60 NIAGNHFDFSKTPSDKAIRELRRNVGMVFQQ 90
|
Length = 242 |
| >gnl|CDD|182342 PRK10261, PRK10261, glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 51.4 bits (123), Expect = 2e-06
Identities = 35/122 (28%), Positives = 62/122 (50%), Gaps = 16/122 (13%)
Query: 1020 IDRESKIDPSDESGTILEDVKGE--IELHHVSFKYPSRP--------DVQVFRDLNLKIR 1069
++ +K +P E T+ V GE +++ ++ ++P R +V ++ +
Sbjct: 292 LEHPAKQEPPIEQDTV---VDGEPILQVRNLVTRFPLRSGLLNRVTREVHAVEKVSFDLW 348
Query: 1070 AGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKL---QLKWLRQQMGLVSQ 1126
G+T++LVGESGSGKST L R + G I +G I L +L+ LR+ + + Q
Sbjct: 349 PGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTLSPGKLQALRRDIQFIFQ 408
Query: 1127 EP 1128
+P
Sbjct: 409 DP 410
|
Length = 623 |
| >gnl|CDD|183280 PRK11701, phnK, phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Score = 50.3 bits (121), Expect = 2e-06
Identities = 24/77 (31%), Positives = 40/77 (51%), Gaps = 9/77 (11%)
Query: 1061 FRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDG-----VEIQKL--- 1112
RD++ + G+ + +VGESGSGK+T+++ L PDAG + ++ L
Sbjct: 22 CRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALSEA 81
Query: 1113 QLKWL-RQQMGLVSQEP 1128
+ + L R + G V Q P
Sbjct: 82 ERRRLLRTEWGFVHQHP 98
|
Length = 258 |
| >gnl|CDD|130256 TIGR01188, drrA, daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 51.2 bits (123), Expect = 2e-06
Identities = 25/97 (25%), Positives = 47/97 (48%), Gaps = 7/97 (7%)
Query: 1062 RDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQM 1121
+N K+R G+ +G +G+GK+T + +L P +G + G ++ + + + +R+ +
Sbjct: 10 DGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVR-EPRKVRRSI 68
Query: 1122 GLVSQEPVLFND-TIRANIA-----YGKGGDATEAEI 1152
G+V Q + D T R N+ YG D E
Sbjct: 69 GIVPQYASVDEDLTGRENLEMMGRLYGLPKDEAEERA 105
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc [Transport and binding proteins, Other]. Length = 302 |
| >gnl|CDD|182880 PRK10982, PRK10982, galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 51.7 bits (124), Expect = 2e-06
Identities = 43/163 (26%), Positives = 75/163 (46%), Gaps = 19/163 (11%)
Query: 407 ISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDG--INLK------EFQLQWI 458
+ + + AL+G++G+GKST++ + Y +G +L G I+ K E + +
Sbjct: 19 LKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKEALENGISMV 78
Query: 459 RKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGE 518
+++ LV Q V+ DN+ G+ + + D+L ID
Sbjct: 79 HQELNLVLQRSVM------DNMWLGRYPTKGMFVDQDKMYRDTKAIFDEL--DIDIDPRA 130
Query: 519 HGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVV 561
LS Q Q I IA+A + +I+++DE TS+L +EK V
Sbjct: 131 KVATLSVSQMQMIEIAKAFSYNAKIVIMDEPTSSL---TEKEV 170
|
Length = 491 |
| >gnl|CDD|182880 PRK10982, PRK10982, galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 51.3 bits (123), Expect = 2e-06
Identities = 29/75 (38%), Positives = 42/75 (56%), Gaps = 1/75 (1%)
Query: 1054 SRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQ-KL 1112
S P V+ ++NLK+R AL+GE+G+GKST++ L Y D+G I G EI K
Sbjct: 7 SFPGVKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKS 66
Query: 1113 QLKWLRQQMGLVSQE 1127
+ L + +V QE
Sbjct: 67 SKEALENGISMVHQE 81
|
Length = 491 |
| >gnl|CDD|172750 PRK14262, PRK14262, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 49.5 bits (118), Expect = 3e-06
Identities = 27/93 (29%), Positives = 51/93 (54%), Gaps = 7/93 (7%)
Query: 1057 DVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYD--PD---AGHITLDGVEI-- 1109
+ + +++ +KI + A++G SG GK+T++ + R D P G I G +I
Sbjct: 15 EKKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYD 74
Query: 1110 QKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYG 1142
+L + R+++G+V Q+P F +I N+A+G
Sbjct: 75 PQLDVTEYRKKVGMVFQKPTPFPMSIYDNVAFG 107
|
Length = 250 |
| >gnl|CDD|132027 TIGR02982, heterocyst_DevA, ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Score = 49.2 bits (118), Expect = 3e-06
Identities = 25/71 (35%), Positives = 41/71 (57%), Gaps = 3/71 (4%)
Query: 1059 QVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQ---KLQLK 1115
QV D+NL+I G+ V L G SGSGK+T+++L+ G + + G E+ + +L
Sbjct: 19 QVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELV 78
Query: 1116 WLRQQMGLVSQ 1126
LR+ +G + Q
Sbjct: 79 QLRRNIGYIFQ 89
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. Length = 220 |
| >gnl|CDD|226628 COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 50.4 bits (121), Expect = 3e-06
Identities = 30/85 (35%), Positives = 50/85 (58%), Gaps = 5/85 (5%)
Query: 1063 DLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDG---VEIQK-LQLKWLR 1118
D N + A AL G SGSGK+++++++ PD G I L+G V+ +K + L +
Sbjct: 16 DANFTLPARGITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEK 75
Query: 1119 QQMGLVSQEPVLF-NDTIRANIAYG 1142
+++G V Q+ LF + T+R N+ YG
Sbjct: 76 RRIGYVFQDARLFPHYTVRGNLRYG 100
|
Length = 352 |
| >gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Score = 51.2 bits (123), Expect = 3e-06
Identities = 30/79 (37%), Positives = 44/79 (55%), Gaps = 9/79 (11%)
Query: 1059 QVFRDLNLKIRAGKTVALVGESGSGKS-TVVSLLQRFYDPDA----GHITLDGVEIQKLQ 1113
V D++L+I AG+T+ALVGESGSGKS T +S+L+ P G I G +
Sbjct: 23 TVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHAS 82
Query: 1114 LKWLRQ----QMGLVSQEP 1128
+ LR ++ ++ QEP
Sbjct: 83 EQTLRGVRGNKIAMIFQEP 101
|
Length = 529 |
| >gnl|CDD|188208 TIGR02323, CP_lyasePhnK, phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Score = 49.8 bits (119), Expect = 3e-06
Identities = 32/109 (29%), Positives = 53/109 (48%), Gaps = 15/109 (13%)
Query: 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHI 1102
+++ +S Y + RD++ + G+ + +VGESGSGKST++ L PD G
Sbjct: 4 LQVSGLSKSYGGG---KGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTA 60
Query: 1103 TL---DGVEIQKLQL------KWLRQQMGLVSQEPVLFNDTIRANIAYG 1142
T G E++ QL + +R + G V Q P D +R ++ G
Sbjct: 61 TYIMRSGAELELYQLSEAERRRLMRTEWGFVHQNPR---DGLRMRVSAG 106
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se [Central intermediary metabolism, Phosphorus compounds]. Length = 253 |
| >gnl|CDD|237647 PRK14248, PRK14248, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 49.2 bits (117), Expect = 4e-06
Identities = 32/106 (30%), Positives = 54/106 (50%), Gaps = 10/106 (9%)
Query: 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYD--PDA- 1099
+E+ +S Y + + D+++ I AL+G SG GKST + + R D P A
Sbjct: 22 LEVKDLSIYYGEK---RAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSAR 78
Query: 1100 --GHITLDGVEI--QKLQLKWLRQQMGLVSQEPVLFNDTIRANIAY 1141
G I +G+ I + + LR+++G+V Q+P F +I NI +
Sbjct: 79 SEGEILYEGLNILDSNINVVNLRREIGMVFQKPNPFPKSIYNNITH 124
|
Length = 268 |
| >gnl|CDD|182716 PRK10771, thiQ, thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 49.2 bits (118), Expect = 4e-06
Identities = 31/104 (29%), Positives = 56/104 (53%), Gaps = 14/104 (13%)
Query: 1043 IELHHVSFKY---PSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDA 1099
++L +++ Y P R +L + G+ VA++G SG+GKST+++L+ F P +
Sbjct: 2 LKLTDITWLYHHLPMR--------FDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPAS 53
Query: 1100 GHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFND-TIRANIAYG 1142
G +TL+G + R+ + ++ QE LF+ T+ NI G
Sbjct: 54 GSLTLNGQDHTTTPPS--RRPVSMLFQENNLFSHLTVAQNIGLG 95
|
Length = 232 |
| >gnl|CDD|226592 COG4107, PhnK, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 49.4 bits (118), Expect = 4e-06
Identities = 28/91 (30%), Positives = 45/91 (49%), Gaps = 12/91 (13%)
Query: 1061 FRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQL------ 1114
RD++ + G+ + +VGESGSGK+T++ + PDAG +T + Q L
Sbjct: 22 CRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAGTVTYRMRDGQPRDLYTMSEA 81
Query: 1115 ---KWLRQQMGLVSQEPVLFNDTIRANIAYG 1142
+ LR + G V Q P D +R ++ G
Sbjct: 82 ERRRLLRTEWGFVHQNPR---DGLRMQVSAG 109
|
Length = 258 |
| >gnl|CDD|213182 cd03215, ABC_Carb_Monos_II, Second domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 48.2 bits (116), Expect = 4e-06
Identities = 23/89 (25%), Positives = 41/89 (46%), Gaps = 11/89 (12%)
Query: 1060 VFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWL-- 1117
RD++ ++RAG+ V + G G+G++ + L P +G ITLDG + + +
Sbjct: 15 AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDAIR 74
Query: 1118 ---------RQQMGLVSQEPVLFNDTIRA 1137
R++ GLV V N + +
Sbjct: 75 AGIAYVPEDRKREGLVLDLSVAENIALSS 103
|
This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 182 |
| >gnl|CDD|226961 COG4598, HisP, ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 49.0 bits (117), Expect = 5e-06
Identities = 29/87 (33%), Positives = 47/87 (54%), Gaps = 16/87 (18%)
Query: 1059 QVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQ-------- 1110
+V + ++L+ AG ++++G SGSGKST + + P AG I ++G EI+
Sbjct: 20 EVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRDKDGQ 79
Query: 1111 -----KLQLKWLRQQMGLVSQEPVLFN 1132
K QL+ LR ++G+V Q FN
Sbjct: 80 LKPADKRQLQRLRTRLGMVFQH---FN 103
|
Length = 256 |
| >gnl|CDD|237419 PRK13536, PRK13536, nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Score = 49.8 bits (119), Expect = 5e-06
Identities = 35/115 (30%), Positives = 61/115 (53%), Gaps = 6/115 (5%)
Query: 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHI 1102
I+L VS Y + V L+ + +G+ L+G +G+GKST+ ++ PDAG I
Sbjct: 42 IDLAGVSKSYGDKA---VVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKI 98
Query: 1103 TLDGVEIQKLQLKWLRQQMGLVSQEPVLFND-TIRAN-IAYGKGGDATEAEIQAA 1155
T+ GV + + + R ++G+V Q L + T+R N + +G+ + EI+A
Sbjct: 99 TVLGVPVPA-RARLARARIGVVPQFDNLDLEFTVRENLLVFGRYFGMSTREIEAV 152
|
Length = 340 |
| >gnl|CDD|185067 PRK15112, PRK15112, antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Score = 49.0 bits (117), Expect = 5e-06
Identities = 26/92 (28%), Positives = 54/92 (58%), Gaps = 6/92 (6%)
Query: 1043 IELHHVS--FKYPS----RPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYD 1096
+E+ ++S F+Y + R V+ + L+ +R G+T+A++GE+GSGKST+ +L +
Sbjct: 5 LEVRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIE 64
Query: 1097 PDAGHITLDGVEIQKLQLKWLRQQMGLVSQEP 1128
P +G + +D + + Q++ ++ Q+P
Sbjct: 65 PTSGELLIDDHPLHFGDYSYRSQRIRMIFQDP 96
|
Length = 267 |
| >gnl|CDD|183080 PRK11300, livG, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 49.2 bits (118), Expect = 5e-06
Identities = 21/48 (43%), Positives = 31/48 (64%)
Query: 1065 NLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKL 1112
NL++R + V+L+G +G+GK+TV + L FY P G I L G I+ L
Sbjct: 25 NLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGL 72
|
Length = 255 |
| >gnl|CDD|213200 cd03233, ABCG_PDR_domain1, First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 48.4 bits (116), Expect = 5e-06
Identities = 51/232 (21%), Positives = 92/232 (39%), Gaps = 65/232 (28%)
Query: 390 YFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVI----SLIERFYDPQAGEVLI 445
+ + R I FS + G ++G+ GSG ST++ + E + G++
Sbjct: 11 FTTGKGRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVE-GDIHY 69
Query: 446 DGINLKEFQLQWIRKKIGLVSQE----PVLFTGSIKDNIAYGKDDATTEE-IRVATELAN 500
+GI KEF ++ + I VS+E P L T E + A
Sbjct: 70 NGIPYKEFAEKYPGEII-YVSEEDVHFPTL----------------TVRETLDFALRC-- 110
Query: 501 AAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKV 560
+G + + G +SGG+++R++IA A++ +L D +T LD+ +
Sbjct: 111 ---------KGNEFVRG-----ISGGERKRVSIAEALVSRASVLCWDNSTRGLDSST--- 153
Query: 561 VQEALDRIMVNRTTVIVAHRLSTVRNA-------------DMIAVIHRGKIV 599
AL+ + RT +A L T D + V++ G+ +
Sbjct: 154 ---ALEILKCIRT---MADVLKTTTFVSLYQASDEIYDLFDKVLVLYEGRQI 199
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 202 |
| >gnl|CDD|184590 PRK14249, PRK14249, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 48.9 bits (116), Expect = 6e-06
Identities = 34/108 (31%), Positives = 58/108 (53%), Gaps = 10/108 (9%)
Query: 1042 EIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDA-- 1099
+I++ V+F Y QV +++N+ + A++G SG GKST++ L R D +
Sbjct: 4 KIKIRGVNFFYHKH---QVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGA 60
Query: 1100 ---GHITLDGVEI--QKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYG 1142
G + LD I L + LR+++G+V Q+P F +I N+A+G
Sbjct: 61 RLEGAVLLDNENIYSPNLDVVNLRKRVGMVFQQPNPFPKSIFDNVAFG 108
|
Length = 251 |
| >gnl|CDD|223487 COG0410, LivF, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 48.6 bits (117), Expect = 6e-06
Identities = 25/87 (28%), Positives = 46/87 (52%), Gaps = 2/87 (2%)
Query: 1058 VQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQL-KW 1116
+Q R ++L++ G+ VAL+G +G+GK+T++ + P +G I DG +I L +
Sbjct: 16 IQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHER 75
Query: 1117 LRQQMGLVSQEPVLFND-TIRANIAYG 1142
R + V + +F T+ N+ G
Sbjct: 76 ARLGIAYVPEGRRIFPRLTVEENLLLG 102
|
Length = 237 |
| >gnl|CDD|130252 TIGR01184, ntrCD, nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Score = 48.6 bits (116), Expect = 6e-06
Identities = 18/50 (36%), Positives = 34/50 (68%)
Query: 1062 RDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQK 1111
+ +NL I+ G+ ++L+G SG GKST+++L+ P +G + L+G +I +
Sbjct: 2 KGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITE 51
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase [Transport and binding proteins, Anions, Transport and binding proteins, Other]. Length = 230 |
| >gnl|CDD|213184 cd03217, ABC_FeS_Assembly, ABC-type transport system involved in Fe-S cluster assembly, ATPase component | Back alignment and domain information |
|---|
Score = 47.9 bits (115), Expect = 6e-06
Identities = 24/77 (31%), Positives = 39/77 (50%), Gaps = 5/77 (6%)
Query: 1057 DVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRF--YDPDAGHITLDGVEIQKLQL 1114
++ + +NL I+ G+ AL+G +GSGKST+ + Y+ G I G +I L
Sbjct: 12 GKEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPP 71
Query: 1115 KWLRQQMG--LVSQEPV 1129
+ R ++G L Q P
Sbjct: 72 E-ERARLGIFLAFQYPP 87
|
Biosynthesis of iron-sulfur clusters (Fe-S) depends on multi-protein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. Length = 200 |
| >gnl|CDD|181888 PRK09473, oppD, oligopeptide transporter ATP-binding component; Provisional | Back alignment and domain information |
|---|
Score = 49.3 bits (118), Expect = 6e-06
Identities = 39/107 (36%), Positives = 55/107 (51%), Gaps = 12/107 (11%)
Query: 1029 SDESGTILEDVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVV 1088
+ + L DVK +L V+F P DV DLN +RAG+T+ +VGESGSGKS
Sbjct: 5 AQQQADALLDVK---DLR-VTFSTPD-GDVTAVNDLNFSLRAGETLGIVGESGSGKSQTA 59
Query: 1089 SLLQRFYDPD---AGHITLDGVEIQKL---QLKWLR-QQMGLVSQEP 1128
L + G T +G EI L +L LR +Q+ ++ Q+P
Sbjct: 60 FALMGLLAANGRIGGSATFNGREILNLPEKELNKLRAEQISMIFQDP 106
|
Length = 330 |
| >gnl|CDD|237453 PRK13633, PRK13633, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 48.9 bits (117), Expect = 7e-06
Identities = 27/90 (30%), Positives = 50/90 (55%), Gaps = 4/90 (4%)
Query: 1043 IELHHVSFKYPSRPDVQ---VFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDA 1099
I+ +VS+KY S + D+NL+++ G+ + ++G +GSGKST+ + P
Sbjct: 5 IKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSE 64
Query: 1100 GHITLDGVEIQKLQLKW-LRQQMGLVSQEP 1128
G + +DG++ + W +R + G+V Q P
Sbjct: 65 GKVYVDGLDTSDEENLWDIRNKAGMVFQNP 94
|
Length = 280 |
| >gnl|CDD|233208 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Score = 50.1 bits (120), Expect = 8e-06
Identities = 45/160 (28%), Positives = 86/160 (53%), Gaps = 25/160 (15%)
Query: 412 GTTAALVGQSGSGKSTVIS-LIERFYDP--QAGEVLIDGINLKE-FQLQWIRKKIGLVSQ 467
GT AL+G SG+GK+T+++ L ER G+ L++G L FQ + IG V Q
Sbjct: 789 GTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLDSSFQ-----RSIGYVQQ 843
Query: 468 EPV-LFTGSIKDNIAYGKDDATTEEIRVATELANAAK--FIDK------LPQGIDTLVGE 518
+ + L T ++++++ + + +R ++ + K ++++ + D +VG
Sbjct: 844 QDLHLPTSTVRESLRF------SAYLRQPKSVSKSEKMEYVEEVIKLLEMESYADAVVGV 897
Query: 519 HGTQLSGGQKQRIAIARAILKDPRILL-LDEATSALDAES 557
G L+ Q++R+ I ++ P++LL LDE TS LD+++
Sbjct: 898 PGEGLNVEQRKRLTIGVELVAKPKLLLFLDEPTSGLDSQT 937
|
[Transport and binding proteins, Other]. Length = 1394 |
| >gnl|CDD|172743 PRK14255, PRK14255, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 48.4 bits (115), Expect = 9e-06
Identities = 30/91 (32%), Positives = 47/91 (51%), Gaps = 7/91 (7%)
Query: 1059 QVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYD--PDA---GHITLDGVEI--QK 1111
+ + ++L + AL+G SG GKST + L R D P G+++L G I
Sbjct: 19 EALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPN 78
Query: 1112 LQLKWLRQQMGLVSQEPVLFNDTIRANIAYG 1142
+ LR+Q+G+V Q+P F +I N+ YG
Sbjct: 79 EDVVQLRKQVGMVFQQPNPFPFSIYENVIYG 109
|
Length = 252 |
| >gnl|CDD|172200 PRK13652, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 48.6 bits (116), Expect = 9e-06
Identities = 27/102 (26%), Positives = 51/102 (50%), Gaps = 4/102 (3%)
Query: 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHI 1102
IE + + Y + ++N +A++G +G+GKST+ P +G +
Sbjct: 4 IETRDLCYSY--SGSKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSV 61
Query: 1103 TLDGVEIQKLQLKWLRQQMGLVSQEP--VLFNDTIRANIAYG 1142
+ G I K ++ +R+ +GLV Q P +F+ T+ +IA+G
Sbjct: 62 LIRGEPITKENIREVRKFVGLVFQNPDDQIFSPTVEQDIAFG 103
|
Length = 277 |
| >gnl|CDD|131367 TIGR02314, ABC_MetN, D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 48.3 bits (115), Expect = 1e-05
Identities = 27/103 (26%), Positives = 58/103 (56%), Gaps = 5/103 (4%)
Query: 1043 IELHHVS-FKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGH 1101
I+L +++ + +Q +++L + AG+ ++G SG+GKST++ + P +G
Sbjct: 2 IKLSNITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGS 61
Query: 1102 ITLDGVEIQKL---QLKWLRQQMGLVSQE-PVLFNDTIRANIA 1140
+ +DG ++ L +L R+Q+G++ Q +L + T+ N+A
Sbjct: 62 VIVDGQDLTTLSNSELTKARRQIGMIFQHFNLLSSRTVFGNVA 104
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. Length = 343 |
| >gnl|CDD|132050 TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 48.3 bits (115), Expect = 1e-05
Identities = 29/102 (28%), Positives = 50/102 (49%), Gaps = 16/102 (15%)
Query: 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHI 1102
+ V+ ++ + V LN + AG+ VAL+G SGSGKST++ +L D G I
Sbjct: 1 VRFSDVTKRFG---ILTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQI 57
Query: 1103 TLDGVEIQKLQ-------------LKWLRQQMGLVSQEPVLF 1131
++G ++ + L+ +R ++G+V Q LF
Sbjct: 58 QVEGEQLYHMPGRNGPLVPADEKHLRQMRNKIGMVFQSFNLF 99
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. Length = 252 |
| >gnl|CDD|172734 PRK14246, PRK14246, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 47.7 bits (113), Expect = 1e-05
Identities = 37/118 (31%), Positives = 61/118 (51%), Gaps = 13/118 (11%)
Query: 1031 ESGTILEDVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSL 1090
E+G EDV ++S Y D + +D+ +KI ++G SGSGKST++ +
Sbjct: 2 EAGKSAEDV------FNISRLYLYINDKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKV 55
Query: 1091 LQRFYDPDAGHITLD------GVEIQKLQLKWLRQQMGLVSQEPVLF-NDTIRANIAY 1141
L R + I +D G +I ++ LR+++G+V Q+P F + +I NIAY
Sbjct: 56 LNRLIEIYDSKIKVDGKVLYFGKDIFQIDAIKLRKEVGMVFQQPNPFPHLSIYDNIAY 113
|
Length = 257 |
| >gnl|CDD|184593 PRK14258, PRK14258, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 48.1 bits (114), Expect = 1e-05
Identities = 31/108 (28%), Positives = 62/108 (57%), Gaps = 12/108 (11%)
Query: 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHI 1102
I+++++SF Y ++ ++ ++++I K A++G SG GKST + L R + + +
Sbjct: 8 IKVNNLSFYYDTQ---KILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELE-SEV 63
Query: 1103 TLDG-VEI-------QKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYG 1142
++G VE +++ L LR+Q+ +V +P LF ++ N+AYG
Sbjct: 64 RVEGRVEFFNQNIYERRVNLNRLRRQVSMVHPKPNLFPMSVYDNVAYG 111
|
Length = 261 |
| >gnl|CDD|184130 PRK13545, tagH, teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 49.5 bits (118), Expect = 1e-05
Identities = 66/290 (22%), Positives = 116/290 (40%), Gaps = 30/290 (10%)
Query: 385 ELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVL 444
+L+D++F + S + G ++G +GSGKST+ +LI P G V
Sbjct: 23 KLKDLFFRSKDGEYHYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVD 82
Query: 445 IDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKF 504
I G I GL Q + +K + + E I E A+ KF
Sbjct: 83 IKG------SAALIAISSGLNGQLTGIENIELKGLMMGLTKEKIKEIIPEIIEFADIGKF 136
Query: 505 IDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEA 564
I Q + T S G K R+ A ++ +P IL++DEA S D K +
Sbjct: 137 IY---QPVKTY--------SSGMKSRLGFAISVHINPDILVIDEALSVGDQTFTKKCLDK 185
Query: 565 LDRIMVN-RTTVIVAHRLSTVRNADMIAV-IHRGKIVEKGTHSKLVEDPEGAYSQLIRLQ 622
++ +T ++H LS V++ A+ +H G++ E G ++V+ Y + L+
Sbjct: 186 MNEFKEQGKTIFFISHSLSQVKSFCTKALWLHYGQVKEYGDIKEVVDH----YDEF--LK 239
Query: 623 EANKESEQTIDGQRKSEISMESLRH---SSHRMSLRRSISRGSSIGNSSR 669
+ N+ S + + + E + +H + R +G +
Sbjct: 240 KYNQMSVE--ERKDFREEQISQFQHGLLQEDQTGRERKRKKGKKTSRKFK 287
|
Length = 549 |
| >gnl|CDD|213189 cd03222, ABC_RNaseL_inhibitor, ATP-binding cassette domain of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 46.8 bits (111), Expect = 1e-05
Identities = 25/70 (35%), Positives = 35/70 (50%), Gaps = 10/70 (14%)
Query: 509 PQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDR- 567
PQ ID LSGG+ QR+AIA A+L++ L DE ++ LD E A+ R
Sbjct: 67 PQYID---------LSGGELQRVAIAAALLRNATFYLFDEPSAYLDIEQRLNAARAIRRL 117
Query: 568 IMVNRTTVIV 577
+ T +V
Sbjct: 118 SEEGKKTALV 127
|
The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 177 |
| >gnl|CDD|188098 TIGR00957, MRP_assoc_pro, multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Score = 49.2 bits (117), Expect = 2e-05
Identities = 68/317 (21%), Positives = 129/317 (40%), Gaps = 38/317 (11%)
Query: 841 LARIVQNISTAAAGLIIAFTASWQ-LALIIL----VMLPLIGVSGYTQMKFMKGFSADAK 895
LA + I +A +I+A W L +L VM+ ++ ++ MK K + A
Sbjct: 431 LATYINMIWSAPLQVILALYFLWLNLGPSVLAGVAVMVLMVPLNAVMAMK-TKTYQV-AH 488
Query: 896 MKYEEAS-QVANDAVGSIRTVASFCAE----EKVMQLYKKKCEAPMKTGIRQGMVSGGGF 950
MK ++ ++ N+ + I+ + + E +KV + +++ + K+ + +
Sbjct: 489 MKSKDNRIKLMNEILNGIKVLKLYAWELAFLDKVEGIRQEELKVLKKSAYLHAVGTFTWV 548
Query: 951 GASFFLLFAFYAASFYAGARLVEDGKATFSDV--FKVF-FSLTMTAIGISQSSSFSSDSN 1007
F + +A + D + F + F + F L + + IS S
Sbjct: 549 CTPFLVALITFAVYVTVDENNILDAEKAFVSLALFNILRFPLNILPMVISSIVQASVSLK 608
Query: 1008 KAKSAAASIFAIIDRESKIDP-SDESGTILEDVKGEIELHHVSFKYPSRPDVQVFRDLNL 1066
+ + I +++P S E TI I +H+ +F + +R +
Sbjct: 609 RLR--------IFLSHEELEPDSIERRTIKPGEGNSITVHNATFTW-ARDLPPTLNGITF 659
Query: 1067 KIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMGLVSQ 1126
I G VA+VG+ G GKS+++S L D GH+ + G + V Q
Sbjct: 660 SIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKG-------------SVAYVPQ 706
Query: 1127 EPVLFNDTIRANIAYGK 1143
+ + ND++R NI +GK
Sbjct: 707 QAWIQNDSLRENILFGK 723
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved [Transport and binding proteins, Other]. Length = 1522 |
| >gnl|CDD|184588 PRK14243, PRK14243, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 47.1 bits (112), Expect = 2e-05
Identities = 28/88 (31%), Positives = 45/88 (51%), Gaps = 7/88 (7%)
Query: 1062 RDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYD--PDA---GHITLDGVEI--QKLQL 1114
+++ L I + A +G SG GKST++ R D P G +T G + +
Sbjct: 27 KNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDP 86
Query: 1115 KWLRQQMGLVSQEPVLFNDTIRANIAYG 1142
+R+++G+V Q+P F +I NIAYG
Sbjct: 87 VEVRRRIGMVFQKPNPFPKSIYDNIAYG 114
|
Length = 264 |
| >gnl|CDD|183133 PRK11432, fbpC, ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 47.8 bits (114), Expect = 2e-05
Identities = 28/84 (33%), Positives = 47/84 (55%), Gaps = 3/84 (3%)
Query: 1060 VFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQ 1119
V +LNL I+ G V L+G SG GK+TV+ L+ P G I +DG ++ ++ ++
Sbjct: 21 VIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSIQ--QR 78
Query: 1120 QMGLVSQEPVLF-NDTIRANIAYG 1142
+ +V Q LF + ++ N+ YG
Sbjct: 79 DICMVFQSYALFPHMSLGENVGYG 102
|
Length = 351 |
| >gnl|CDD|172748 PRK14260, PRK14260, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 47.7 bits (113), Expect = 2e-05
Identities = 32/107 (29%), Positives = 55/107 (51%), Gaps = 10/107 (9%)
Query: 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDA--- 1099
I++ +SF Y + ++ +++ I K A++G SG GKST + L R + +
Sbjct: 8 IKVKDLSFYYNTSKAIE---GISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVK 64
Query: 1100 --GHITLDGVEI--QKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYG 1142
G + G I ++ + LR+Q+G+V Q P F +I N+AYG
Sbjct: 65 VEGVVDFFGQNIYDPRININRLRRQIGMVFQRPNPFPMSIYENVAYG 111
|
Length = 259 |
| >gnl|CDD|237650 PRK14265, PRK14265, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 47.3 bits (112), Expect = 2e-05
Identities = 33/87 (37%), Positives = 46/87 (52%), Gaps = 7/87 (8%)
Query: 1063 DLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYD--PDA---GHITLDGVEIQKLQLKW- 1116
D++LKI A K +A +G SG GKST++ R D P A G + I Q+
Sbjct: 38 DVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQINSV 97
Query: 1117 -LRQQMGLVSQEPVLFNDTIRANIAYG 1142
LR+Q+G+V Q P F +I NIA+
Sbjct: 98 KLRRQVGMVFQRPNPFPKSIYENIAFA 124
|
Length = 274 |
| >gnl|CDD|226637 COG4167, SapF, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 47.5 bits (113), Expect = 2e-05
Identities = 23/91 (25%), Positives = 51/91 (56%), Gaps = 4/91 (4%)
Query: 1042 EIELHHVSFKYPS----RPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDP 1097
E+ +F+Y + R V+ + ++ +R G+T+A++GE+GSGKST+ +L +P
Sbjct: 6 EVRNLSKTFRYRTGLFRRQTVEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEP 65
Query: 1098 DAGHITLDGVEIQKLQLKWLRQQMGLVSQEP 1128
+G I ++ + + +++ ++ Q+P
Sbjct: 66 TSGEILINDHPLHFGDYSFRSKRIRMIFQDP 96
|
Length = 267 |
| >gnl|CDD|213232 cd03265, ABC_DrrA, Daunorubicin/doxorubicin resistance ATP-binding protein | Back alignment and domain information |
|---|
Score = 47.0 bits (112), Expect = 2e-05
Identities = 23/88 (26%), Positives = 52/88 (59%), Gaps = 4/88 (4%)
Query: 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHI 1102
IE+ ++ KY D + R ++ ++R G+ L+G +G+GK+T + +L P +G
Sbjct: 1 IEVENLVKKYG---DFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRA 57
Query: 1103 TLDGVEIQKLQLKWLRQQMGLVSQEPVL 1130
T+ G ++ + + + +R+++G+V Q+ +
Sbjct: 58 TVAGHDVVR-EPREVRRRIGIVFQDLSV 84
|
DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|226952 COG4586, COG4586, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 47.4 bits (113), Expect = 2e-05
Identities = 24/79 (30%), Positives = 43/79 (54%), Gaps = 4/79 (5%)
Query: 1046 HHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLD 1105
H K S VQ D++ +I G+ V +G +G+GKST + +L P +G + ++
Sbjct: 28 HFFHRKERSIEAVQ---DISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVN 84
Query: 1106 GVEIQKLQLKWLRQQMGLV 1124
G + + + ++LR +GLV
Sbjct: 85 GKDPFRRREEYLR-SIGLV 102
|
Length = 325 |
| >gnl|CDD|184129 PRK13543, PRK13543, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 47.2 bits (112), Expect = 2e-05
Identities = 46/171 (26%), Positives = 74/171 (43%), Gaps = 28/171 (16%)
Query: 395 ARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQ 454
+R E +F + +G + G +G+GK+T++ ++ ++G++ IDG
Sbjct: 20 SRNEEPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRGD 79
Query: 455 LQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEI---------RVATELANAAKFI 505
+ + + P L K D +T E R A ++ +A I
Sbjct: 80 RS---RFMAYLGHLPGL------------KADLSTLENLHFLCGLHGRRAKQMPGSALAI 124
Query: 506 DKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAE 556
L DTLV QLS GQK+R+A+AR L + LLDE + LD E
Sbjct: 125 VGLAGYEDTLV----RQLSAGQKKRLALARLWLSPAPLWLLDEPYANLDLE 171
|
Length = 214 |
| >gnl|CDD|172760 PRK14272, PRK14272, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 46.9 bits (111), Expect = 3e-05
Identities = 29/82 (35%), Positives = 48/82 (58%), Gaps = 7/82 (8%)
Query: 1057 DVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYD--PDA---GHITLDGVEIQK 1111
D Q +++NL ++ G AL+G SG GK+T + + R +D P A G I LDG +I
Sbjct: 16 DKQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYG 75
Query: 1112 LQLK--WLRQQMGLVSQEPVLF 1131
++ +R+++G+V Q+P F
Sbjct: 76 PRVDPVAMRRRVGMVFQKPNPF 97
|
Length = 252 |
| >gnl|CDD|226620 COG4136, COG4136, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 46.4 bits (110), Expect = 3e-05
Identities = 25/90 (27%), Positives = 45/90 (50%), Gaps = 8/90 (8%)
Query: 1045 LHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPD---AGH 1101
L +VS + P + ++N I G+ V L+G SG GKST++S + G
Sbjct: 5 LKNVSLRLPGSC---LLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGE 61
Query: 1102 ITLDGVEIQKLQLKWLRQQMGLVSQEPVLF 1131
+ L+ + L ++Q+G++ Q+ +LF
Sbjct: 62 LWLNEQRLDMLPAA--QRQIGILFQDALLF 89
|
Length = 213 |
| >gnl|CDD|233305 TIGR01189, ccmA, heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Score = 45.8 bits (109), Expect = 3e-05
Identities = 17/66 (25%), Positives = 36/66 (54%)
Query: 1054 SRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQ 1113
SR + +F L+ + AG+ + + G +G GK+T++ +L PD+G + +G + + +
Sbjct: 9 SRGERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQR 68
Query: 1114 LKWLRQ 1119
+ R
Sbjct: 69 DEPHRN 74
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Other]. Length = 198 |
| >gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 48.0 bits (115), Expect = 3e-05
Identities = 62/235 (26%), Positives = 110/235 (46%), Gaps = 33/235 (14%)
Query: 385 ELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQ-AGEV 443
E+R++ P P+ + S S+ G + G G+G++ ++ + Y + GE+
Sbjct: 261 EVRNLTAWDPVNPHIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRWEGEI 320
Query: 444 LIDGINLK-EFQLQWIRKKIGLVSQE-------PVLFTGSIKDNIAYGKDDATTEEIRV- 494
IDG +K Q I + I +V ++ PV+ + NI D T R+
Sbjct: 321 FIDGKPVKIRNPQQAIAQGIAMVPEDRKRDGIVPVM---GVGKNITLAALDRFTGGSRID 377
Query: 495 -ATELANAAKFIDKLPQGIDTLVGEHG-TQLSGGQKQRIAIARAILKDPRILLLDEATSA 552
A EL + I +L + T E +LSGG +Q+ +A+ +L +P+IL+LDE T
Sbjct: 378 DAAELKTILESIQRLK--VKTASPELAIARLSGGNQQKAVLAKCLLLNPKILILDEPTRG 435
Query: 553 LD--AESE------KVVQEALDRIMVNRTTVIVAHRLSTVRN-ADMIAVIHRGKI 598
+D A+ E ++VQ+ + I+ ++ L V +D + V+H GK+
Sbjct: 436 IDVGAKYEIYKLINQLVQQGVAIIV-------ISSELPEVLGLSDRVLVMHEGKL 483
|
Length = 506 |
| >gnl|CDD|225265 COG2401, COG2401, ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only] | Back alignment and domain information |
|---|
Score = 47.9 bits (114), Expect = 3e-05
Identities = 20/53 (37%), Positives = 34/53 (64%), Gaps = 8/53 (15%)
Query: 1060 VFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRF--------YDPDAGHITL 1104
V R+LNL+I+ G VA+VG+SG+GK+T++ ++ Y PD+G + +
Sbjct: 398 VLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEV 450
|
Length = 593 |
| >gnl|CDD|233062 TIGR00630, uvra, excinuclease ABC, A subunit | Back alignment and domain information |
|---|
Score = 48.5 bits (116), Expect = 3e-05
Identities = 37/125 (29%), Positives = 59/125 (47%), Gaps = 22/125 (17%)
Query: 501 AAKFIDKLP---QGIDTLV---------GEHGTQLSGGQKQRIAIARAILKD---PRILL 545
A +F + +P + + TL G+ T LSGG+ QRI +A+ + K + +
Sbjct: 796 AYEFFEAVPSISRKLQTLCDVGLGYIRLGQPATTLSGGEAQRIKLAKELSKRSTGRTLYI 855
Query: 546 LDEATSALDAESEKVVQEALDRIMVNRTTVIV-AHRLSTVRNADMIAVI------HRGKI 598
LDE T+ L + K + E L R++ TV+V H L ++ AD I + G +
Sbjct: 856 LDEPTTGLHFDDIKKLLEVLQRLVDKGNTVVVIEHNLDVIKTADYIIDLGPEGGDGGGTV 915
Query: 599 VEKGT 603
V GT
Sbjct: 916 VASGT 920
|
This family is a member of the ABC transporter superfamily of proteins of which all members for which functions are known except the UvrA proteins are involved in the transport of material through membranes. UvrA orthologs are involved in the recognition of DNA damage as a step in nucleotide excision repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University) [DNA metabolism, DNA replication, recombination, and repair]. Length = 925 |
| >gnl|CDD|237894 PRK15064, PRK15064, ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 48.0 bits (115), Expect = 3e-05
Identities = 33/122 (27%), Positives = 62/122 (50%), Gaps = 34/122 (27%)
Query: 1000 SSFSSDSNKAKSAAASIFAIIDRESKIDPSDESGTILEDVKGE----------------- 1042
S FS++++KAK A + R +ID LE+VK
Sbjct: 270 SRFSANASKAKQATS-------RAKQIDK-----IKLEEVKPSSRQNPFIRFEQDKKLHR 317
Query: 1043 --IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAG 1100
+E+ +++ + + P +F++LNL + AG+ +A++GE+G GK+T++ L +PD+G
Sbjct: 318 NALEVENLTKGFDNGP---LFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSG 374
Query: 1101 HI 1102
+
Sbjct: 375 TV 376
|
Length = 530 |
| >gnl|CDD|236861 PRK11147, PRK11147, ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Score = 47.6 bits (114), Expect = 3e-05
Identities = 57/215 (26%), Positives = 103/215 (47%), Gaps = 48/215 (22%)
Query: 417 LVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVS---QEPVL-F 472
LVG++G+GKST++ ++ GEVL+D + ++ + + I V+ Q+P
Sbjct: 34 LVGRNGAGKSTLMKIL-------NGEVLLD-----DGRIIYEQDLI--VARLQQDPPRNV 79
Query: 473 TGSIKDNIAYG---------------KDDATTEEIRVATELANAAKFID-----KLPQGI 512
G++ D +A G T + ELA + +D +L I
Sbjct: 80 EGTVYDFVAEGIEEQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQLDHHNLWQLENRI 139
Query: 513 DTLVGEHG-------TQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEAL 565
+ ++ + G + LSGG ++ A+ RA++ +P +LLLDE T+ LD E+ + ++ L
Sbjct: 140 NEVLAQLGLDPDAALSSLSGGWLRKAALGRALVSNPDVLLLDEPTNHLDIETIEWLEGFL 199
Query: 566 DRIMVNRTTVIVAHRLSTVRN-ADMIAVIHRGKIV 599
+ + ++H S +RN A I + RGK+V
Sbjct: 200 --KTFQGSIIFISHDRSFIRNMATRIVDLDRGKLV 232
|
Length = 635 |
| >gnl|CDD|184131 PRK13546, PRK13546, teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 46.7 bits (111), Expect = 3e-05
Identities = 70/262 (26%), Positives = 111/262 (42%), Gaps = 48/262 (18%)
Query: 394 PARPNEQIFSGFSISISS--GTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLK 451
P N+ F+ IS+ + G LVG +GSGKST+ ++I P G+V +G
Sbjct: 30 PKHKNKTFFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVDRNG---- 85
Query: 452 EFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKL-PQ 510
++ I GL Q TG +NI E ++ + K I + P+
Sbjct: 86 --EVSVIAISAGLSGQ----LTGI--ENI----------EFKMLC-MGFKRKEIKAMTPK 126
Query: 511 GID-TLVGEHGTQ----LSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEAL 565
I+ + +GE Q S G + ++ + I +P IL++DEA S D + Q+ L
Sbjct: 127 IIEFSELGEFIYQPVKKYSSGMRAKLGFSINITVNPDILVIDEALSVGD---QTFAQKCL 183
Query: 566 DRIM----VNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVEDPEGAYSQLI- 619
D+I N+T V+H L VR IA I GK+ + G ++D Y +
Sbjct: 184 DKIYEFKEQNKTIFFVSHNLGQVRQFCTKIAWIEGGKLKDYGE----LDDVLPKYEAFLN 239
Query: 620 ----RLQEANKESEQTIDGQRK 637
+ + KE +D R
Sbjct: 240 DFKKKSKAEQKEFRNKLDESRF 261
|
Length = 264 |
| >gnl|CDD|226635 COG4161, ArtP, ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 46.4 bits (110), Expect = 4e-05
Identities = 24/91 (26%), Positives = 47/91 (51%), Gaps = 9/91 (9%)
Query: 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHI 1102
I+L+ ++ Y + Q D+ L G+T+ L+G SG+GKS+++ +L P +G +
Sbjct: 3 IQLNGINCFYGAH---QALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTL 59
Query: 1103 TLDGVEIQ------KLQLKWLRQQMGLVSQE 1127
+ G ++ LR+ +G+V Q+
Sbjct: 60 NIAGNHFDFSKTPSDKAIRDLRRNVGMVFQQ 90
|
Length = 242 |
| >gnl|CDD|183055 PRK11247, ssuB, aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 46.6 bits (111), Expect = 4e-05
Identities = 25/55 (45%), Positives = 32/55 (58%), Gaps = 3/55 (5%)
Query: 1048 VSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHI 1102
VS +Y R V L+L I AG+ VA+VG SG GKST++ LL P AG +
Sbjct: 18 VSKRYGER---TVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGEL 69
|
Length = 257 |
| >gnl|CDD|130355 TIGR01288, nodI, ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Score = 46.8 bits (111), Expect = 4e-05
Identities = 37/115 (32%), Positives = 58/115 (50%), Gaps = 6/115 (5%)
Query: 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHI 1102
I+L VS Y D V DL+ I G+ L+G +G+GKST+ +L PD G I
Sbjct: 5 IDLVGVSKSYG---DKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKI 61
Query: 1103 TLDGVEIQKLQLKWLRQQMGLVSQEPVLFND-TIRAN-IAYGKGGDATEAEIQAA 1155
T+ G + + + R +G+V Q L + T+R N + +G+ + EI+A
Sbjct: 62 TVLGEPVPS-RARLARVAIGVVPQFDNLDPEFTVRENLLVFGRYFGMSTREIEAV 115
|
This protein is required for normal nodulation by nitrogen-fixing root nodule bacteria such as Mesorhizobium loti. It is a member of the family of ABC transporter ATP binding proteins and works with NodJ to export a nodulation signal molecule. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans [Cellular processes, Other, Transport and binding proteins, Other]. Length = 303 |
| >gnl|CDD|234199 TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Score = 46.0 bits (110), Expect = 4e-05
Identities = 17/54 (31%), Positives = 31/54 (57%)
Query: 1059 QVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKL 1112
+ R ++L++ G+ ++G +G GK+T++ L +G I LDG +I KL
Sbjct: 14 HILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKL 67
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 230 |
| >gnl|CDD|182569 PRK10584, PRK10584, putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Score = 45.9 bits (109), Expect = 4e-05
Identities = 28/90 (31%), Positives = 53/90 (58%), Gaps = 7/90 (7%)
Query: 1043 IELHHVSFKYPSRPDVQ--VFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAG 1100
+E+HH+ K + + + + + L ++ G+T+AL+GESGSGKST++++L D +G
Sbjct: 7 VEVHHLK-KSVGQGEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSG 65
Query: 1101 HITLDGVEIQKL---QLKWLR-QQMGLVSQ 1126
++L G + ++ LR + +G V Q
Sbjct: 66 EVSLVGQPLHQMDEEARAKLRAKHVGFVFQ 95
|
Length = 228 |
| >gnl|CDD|223256 COG0178, UvrA, Excinuclease ATPase subunit [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Score = 47.6 bits (114), Expect = 4e-05
Identities = 42/141 (29%), Positives = 66/141 (46%), Gaps = 25/141 (17%)
Query: 500 NAAKF---IDKLPQGIDTLV---------GEHGTQLSGGQKQRIAIARAILK---DPRIL 544
A +F I K+ + + TLV G+ T LSGG+ QR+ +A+ + K +
Sbjct: 788 EALEFFEAIPKIARKLQTLVDVGLGYIKLGQPATTLSGGEAQRVKLAKELSKRSTGKTLY 847
Query: 545 LLDEATSALDAESEKVVQEALDRIMVNRTTVIV-AHRLSTVRNADMIAVI------HRGK 597
+LDE T+ L + K + E L R++ TVIV H L ++ AD I + G+
Sbjct: 848 ILDEPTTGLHFDDIKKLLEVLHRLVDKGNTVIVIEHNLDVIKTADWIIDLGPEGGDGGGE 907
Query: 598 IVEKGTHSKLVEDPE---GAY 615
IV GT ++ + G Y
Sbjct: 908 IVASGTPEEVAKVKASYTGKY 928
|
Length = 935 |
| >gnl|CDD|172761 PRK14273, PRK14273, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 45.8 bits (108), Expect = 5e-05
Identities = 31/93 (33%), Positives = 47/93 (50%), Gaps = 7/93 (7%)
Query: 1057 DVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYD-----PDAGHITLDGVEI-- 1109
D + ++N+KI AL+G SG GKST + L R D G++ +G I
Sbjct: 19 DFKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYS 78
Query: 1110 QKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYG 1142
+ LR+++G+V Q P F +I NI+YG
Sbjct: 79 NNFDILELRRKIGMVFQTPNPFLMSIYDNISYG 111
|
Length = 254 |
| >gnl|CDD|184587 PRK14241, PRK14241, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 45.9 bits (109), Expect = 6e-05
Identities = 35/108 (32%), Positives = 55/108 (50%), Gaps = 11/108 (10%)
Query: 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYD--PDA- 1099
I++ ++ Y S V+ D+NL I A +G SG GKSTV+ L R ++ P A
Sbjct: 5 IDVKDLNIYYGSFHAVE---DVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGAR 61
Query: 1100 --GHITLDGVEI--QKLQLKWLRQQMGLVSQEPVLFND-TIRANIAYG 1142
G + LDG ++ + +R+ +G+V Q P F +IR N+ G
Sbjct: 62 VEGEVLLDGEDLYGPGVDPVAVRRTIGMVFQRPNPFPTMSIRDNVVAG 109
|
Length = 258 |
| >gnl|CDD|172762 PRK14274, PRK14274, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 45.7 bits (108), Expect = 6e-05
Identities = 29/91 (31%), Positives = 46/91 (50%), Gaps = 7/91 (7%)
Query: 1059 QVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYD--PD---AGHITLDGVEI--QK 1111
+++NL I + A++G SG GKST + L P+ G + +G I K
Sbjct: 26 HALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGK 85
Query: 1112 LQLKWLRQQMGLVSQEPVLFNDTIRANIAYG 1142
+ L LR+ +G+V Q+ F +I N+AYG
Sbjct: 86 VDLVELRKNIGMVFQKGNPFPQSIFDNVAYG 116
|
Length = 259 |
| >gnl|CDD|237420 PRK13537, PRK13537, nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Score = 46.3 bits (110), Expect = 6e-05
Identities = 31/98 (31%), Positives = 53/98 (54%), Gaps = 5/98 (5%)
Query: 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHI 1102
I+ +V +Y D V L+ ++ G+ L+G +G+GK+T + +L PDAG I
Sbjct: 8 IDFRNVEKRYG---DKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSI 64
Query: 1103 TLDGVEIQKLQLKWLRQQMGLVSQEPVLFND-TIRANI 1139
+L G + + + RQ++G+V Q L D T+R N+
Sbjct: 65 SLCGEPVPS-RARHARQRVGVVPQFDNLDPDFTVRENL 101
|
Length = 306 |
| >gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Score = 47.3 bits (112), Expect = 6e-05
Identities = 32/119 (26%), Positives = 59/119 (49%), Gaps = 10/119 (8%)
Query: 1050 FKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEI 1109
F+ RP V LN+ + A +G +G+GK+T +S+L P +G + + G +I
Sbjct: 938 FEPSGRPAVD---RLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDI 994
Query: 1110 QKLQLKWLRQQMGLVSQEPVLFND-TIRANIAY-----GKGGDATEAEIQAASEMANAH 1162
+ L +RQ +G+ Q +LF+ T+ +I + G+ + + E++A E H
Sbjct: 995 ET-NLDAVRQSLGMCPQHNILFHHLTVAEHILFYAQLKGRSWEEAQLEMEAMLEDTGLH 1052
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272 |
| >gnl|CDD|172751 PRK14263, PRK14263, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 45.4 bits (107), Expect = 7e-05
Identities = 34/110 (30%), Positives = 56/110 (50%), Gaps = 15/110 (13%)
Query: 1062 RDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYD-----PDAGHITLDGVEI--QKLQL 1114
RD ++ IR + +G SG GKSTV+ L R D GH+ G ++ + +
Sbjct: 25 RDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDP 84
Query: 1115 KWLRQQMGLVSQEPVLFNDTIRANIAYG------KG--GDATEAEIQAAS 1156
+R+ +G+V Q+P F+ +I N+A+G KG GD + +Q A+
Sbjct: 85 VVVRRYIGMVFQQPNPFSMSIFDNVAFGLRLNRYKGDLGDRVKHALQGAA 134
|
Length = 261 |
| >gnl|CDD|182817 PRK10895, PRK10895, lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 45.3 bits (107), Expect = 8e-05
Identities = 27/78 (34%), Positives = 46/78 (58%), Gaps = 9/78 (11%)
Query: 1059 QVFRDLNLKIRAGKTVALVGESGSGKST----VVSLLQRFYDPDAGHITLDGVEIQKLQL 1114
+V D++L + +G+ V L+G +G+GK+T VV ++ R DAG+I +D +I L L
Sbjct: 17 RVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPR----DAGNIIIDDEDISLLPL 72
Query: 1115 -KWLRQQMGLVSQEPVLF 1131
R+ +G + QE +F
Sbjct: 73 HARARRGIGYLPQEASIF 90
|
Length = 241 |
| >gnl|CDD|223473 COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 45.3 bits (108), Expect = 9e-05
Identities = 21/70 (30%), Positives = 36/70 (51%), Gaps = 6/70 (8%)
Query: 1042 EIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRF--YDPDA 1099
EI+ HV ++ + +NL ++ G+ A++G +GSGKST+ + Y+
Sbjct: 5 EIKDLHVE----VEGKKEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTE 60
Query: 1100 GHITLDGVEI 1109
G I DG +I
Sbjct: 61 GEILFDGEDI 70
|
Length = 251 |
| >gnl|CDD|172740 PRK14252, PRK14252, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 45.0 bits (106), Expect = 1e-04
Identities = 31/116 (26%), Positives = 54/116 (46%), Gaps = 28/116 (24%)
Query: 1044 ELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYD------- 1096
E++ ++F Y Q +++N+ + + AL+G SG GKST + R +D
Sbjct: 18 EVNKLNFYYGG---YQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHY 74
Query: 1097 -------PDAGHI---TLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYG 1142
PD +I +D +E+ R ++ +V Q+P F +I N+AYG
Sbjct: 75 EGEIILHPDNVNILSPEVDPIEV--------RMRISMVFQKPNPFPKSIFENVAYG 122
|
Length = 265 |
| >gnl|CDD|226617 COG4133, CcmA, ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 44.6 bits (106), Expect = 1e-04
Identities = 23/76 (30%), Positives = 39/76 (51%), Gaps = 6/76 (7%)
Query: 1054 SRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQK-- 1111
R + +F DL+ + AG+ + + G +G+GK+T++ +L PDAG + G IQ
Sbjct: 11 ERGERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQNVR 70
Query: 1112 ----LQLKWLRQQMGL 1123
L +L Q G+
Sbjct: 71 ESYHQALLYLGHQPGI 86
|
Length = 209 |
| >gnl|CDD|237421 PRK13539, PRK13539, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 44.5 bits (106), Expect = 1e-04
Identities = 21/55 (38%), Positives = 32/55 (58%)
Query: 1055 RPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEI 1109
R +F L+ + AG+ + L G +GSGK+T++ L+ P AG I LDG +I
Sbjct: 12 RGGRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDI 66
|
Length = 207 |
| >gnl|CDD|182852 PRK10938, PRK10938, putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Score = 46.2 bits (110), Expect = 1e-04
Identities = 58/222 (26%), Positives = 106/222 (47%), Gaps = 22/222 (9%)
Query: 406 SISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLID---GINLKEFQLQWIRKKI 462
S+++++G + A VG +GSGKS + + +GE L QLQ
Sbjct: 23 SLTLNAGDSWAFVGANGSGKSALARALAGELPLLSGERQSQFSHITRLSFEQLQ------ 76
Query: 463 GLVSQEPVLFTGSIKDNIAYGKDDA--TTEEIRVATELANAAKFIDKLPQ--GIDTLVGE 518
LVS E + + D ++ G+DD TT EI + E+ + A+ ++L Q GI L+
Sbjct: 77 KLVSDE---WQRNNTDMLSPGEDDTGRTTAEI-IQDEVKDPAR-CEQLAQQFGITALLDR 131
Query: 519 HGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTT-VIV 577
LS G+ ++ + +A++ +P +L+LDE LD S + + E L + + T V+V
Sbjct: 132 RFKYLSTGETRKTLLCQALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQSGITLVLV 191
Query: 578 AHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVEDPEGAYSQL 618
+R + + V+ + E G ++++ + +QL
Sbjct: 192 LNRFDEIPDFVQFAGVLADCTLAETGEREEILQ--QALVAQL 231
|
Length = 490 |
| >gnl|CDD|236755 PRK10762, PRK10762, D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Score = 46.1 bits (110), Expect = 1e-04
Identities = 22/56 (39%), Positives = 33/56 (58%)
Query: 1054 SRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEI 1109
+ P V+ L + G+ +ALVGE+G+GKST++ +L Y DAG I G E+
Sbjct: 13 AFPGVKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEV 68
|
Length = 501 |
| >gnl|CDD|215558 PLN03073, PLN03073, ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Score = 46.0 bits (109), Expect = 1e-04
Identities = 89/368 (24%), Positives = 146/368 (39%), Gaps = 78/368 (21%)
Query: 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGE 442
DI + + S R + I S++++ G LVG++G+GK+T + R+ A
Sbjct: 177 DIHMENFSISVGGR--DLIVDA-SVTLAFGRHYGLVGRNGTGKTTFL----RYMAMHA-- 227
Query: 443 VLIDGI-------------------------NLKEFQLQWIRKKIGLVSQ------EPVL 471
IDGI N + Q + ++ LV+Q E
Sbjct: 228 --IDGIPKNCQILHVEQEVVGDDTTALQCVLNTDIERTQLLEEEAQLVAQQRELEFETET 285
Query: 472 FTGSIKDNIAYGKDDATT--EEIRVATEL-------ANAAKFIDKLPQGIDTLVGEHGTQ 522
G + KD + EEI EL A AA + L + V T
Sbjct: 286 GKGKGANKDGVDKDAVSQRLEEIYKRLELIDAYTAEARAASILAGLSFTPEMQVKATKT- 344
Query: 523 LSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHR-- 580
SGG + RIA+ARA+ +P +LLLDE T+ LD + ++ L + +T ++V+H
Sbjct: 345 FSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYL--LKWPKTFIVVSHARE 402
Query: 581 -LSTVRNADMIAVIHRGKIVE-KGTHSKLVEDPEGAYSQLIRLQEANKESEQTIDGQRKS 638
L+TV I +H K+V KG + E + E+N+ S +
Sbjct: 403 FLNTV--VTDILHLHGQKLVTYKGDYDTFERTREEQLKNQQKAFESNERSRSHM------ 454
Query: 639 EISMESLRHSSHRMSLRRS-------ISRGSSIGNSSRHSISVSF-----GLPSGQFADT 686
+ ++ R+++ R SL +S + ++ N + G P F+D
Sbjct: 455 QAFIDKFRYNAKRASLVQSRIKALDRLGHVDAVVNDPDYKFEFPTPDDRPGPPIISFSDA 514
Query: 687 ALGEPAGP 694
+ G P GP
Sbjct: 515 SFGYPGGP 522
|
Length = 718 |
| >gnl|CDD|215599 PLN03140, PLN03140, ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Score = 46.4 bits (110), Expect = 1e-04
Identities = 51/203 (25%), Positives = 95/203 (46%), Gaps = 36/203 (17%)
Query: 400 QIFSGFSISISSGTTAALVGQSGSGKSTVISL---------IERFYDPQAGEVLIDGINL 450
Q+ + + G AL+G SG+GK+T++ + IE G++ I G
Sbjct: 894 QLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIE-------GDIRISGFPK 946
Query: 451 KEFQLQWIRKKIGLVSQEPVLFTG-SIKDNIAYGKDDATTEEIRVATELANAAK--FIDK 507
K+ I G Q + ++++++ Y + +R+ E++ K F+D+
Sbjct: 947 KQETFARIS---GYCEQNDIHSPQVTVRESLIY------SAFLRLPKEVSKEEKMMFVDE 997
Query: 508 LPQGI------DTLVGEHG-TQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKV 560
+ + + D +VG G T LS Q++R+ IA ++ +P I+ +DE TS LDA + +
Sbjct: 998 VMELVELDNLKDAIVGLPGVTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAI 1057
Query: 561 VQEAL-DRIMVNRTTVIVAHRLS 582
V + + + RT V H+ S
Sbjct: 1058 VMRTVRNTVDTGRTVVCTIHQPS 1080
|
Length = 1470 |
| >gnl|CDD|213207 cd03240, ABC_Rad50, ATP-binding cassette domain of Rad50 | Back alignment and domain information |
|---|
Score = 44.1 bits (105), Expect = 1e-04
Identities = 44/200 (22%), Positives = 78/200 (39%), Gaps = 39/200 (19%)
Query: 406 SISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLV 465
I S T +VGQ+G+GK+T +I+ + G
Sbjct: 17 EIEFFSPLTL-IVGQNGAGKTT----------------IIEALKYALTGEL-PPNSKGGA 58
Query: 466 SQEPVLFTGSIKDNIAYGKDDATTEEIRVATELA--NAAKFIDKLPQG-IDTLVGEHGTQ 522
++ G ++ + ++A ++ + LA F QG + + + +
Sbjct: 59 HDPKLIREGEVRAQVKLAFENANGKKYTITRSLAILENVIFC---HQGESNWPLLDMRGR 115
Query: 523 LSGGQKQ------RIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIM------V 570
SGG+K R+A+A + IL LDE T+ LD E+ ++E+L I+
Sbjct: 116 CSGGEKVLASLIIRLALAETFGSNCGILALDEPTTNLDEEN---IEESLAEIIEERKSQK 172
Query: 571 NRTTVIVAHRLSTVRNADMI 590
N +++ H V AD I
Sbjct: 173 NFQLIVITHDEELVDAADHI 192
|
The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence. Length = 204 |
| >gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 45.2 bits (108), Expect = 2e-04
Identities = 23/92 (25%), Positives = 42/92 (45%), Gaps = 12/92 (13%)
Query: 1053 PSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQ-- 1110
R V +D++ ++RAG+ V + G +G+G+S +V + P +G I L+G ++
Sbjct: 266 KDRRGVTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPASGRILLNGKDVLGR 325
Query: 1111 ----KLQLKWL------RQQMGLVSQEPVLFN 1132
+ + L R GLV + N
Sbjct: 326 LSPRERRRLGLAYVPEDRHGHGLVLDLSLAEN 357
|
Length = 501 |
| >gnl|CDD|224026 COG1101, PhnK, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 44.6 bits (106), Expect = 2e-04
Identities = 18/54 (33%), Positives = 33/54 (61%)
Query: 1059 QVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKL 1112
+ L+L+I G V ++G +G+GKST+++ + P +G I +DGV++ K
Sbjct: 20 RALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKK 73
|
Length = 263 |
| >gnl|CDD|182342 PRK10261, PRK10261, glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 45.2 bits (107), Expect = 2e-04
Identities = 25/89 (28%), Positives = 43/89 (48%), Gaps = 14/89 (15%)
Query: 1055 RPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGV------- 1107
+ + R+L+ ++ G+T+A+VGESGSGKS L R + G + D +
Sbjct: 26 QQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRSR 85
Query: 1108 ------EIQKLQLKWLR-QQMGLVSQEPV 1129
E Q++ +R M ++ QEP+
Sbjct: 86 QVIELSEQSAAQMRHVRGADMAMIFQEPM 114
|
Length = 623 |
| >gnl|CDD|163452 TIGR03740, galliderm_ABC, gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 43.5 bits (103), Expect = 2e-04
Identities = 23/98 (23%), Positives = 49/98 (50%), Gaps = 8/98 (8%)
Query: 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHI 1102
+E ++S ++ + V +++L + L+G +G+GKST++ ++ P +G I
Sbjct: 1 LETKNLSKRFGKQTAVN---NISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEI 57
Query: 1103 TLDGVEIQKLQLKWLRQQMGLVSQEPVLFND-TIRANI 1139
DG + L ++G + + P L+ + T R N+
Sbjct: 58 IFDGHPWTRKDLH----KIGSLIESPPLYENLTARENL 91
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. Length = 223 |
| >gnl|CDD|184210 PRK13651, PRK13651, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 44.3 bits (105), Expect = 2e-04
Identities = 36/145 (24%), Positives = 72/145 (49%), Gaps = 31/145 (21%)
Query: 1042 EIELHHVSFKYPSRP--DVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDA 1099
+I++ ++ + + +++ +++++I G+ +A++G++GSGK+T + L PD
Sbjct: 2 QIKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDT 61
Query: 1100 GHI------------------TLDGVEIQKL------QLKWLRQQMGLVSQ--EPVLFND 1133
G I L+ + IQK ++K +R+++G+V Q E LF
Sbjct: 62 GTIEWIFKDEKNKKKTKEKEKVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQ 121
Query: 1134 TIRANIAYGK---GGDATEAEIQAA 1155
TI +I +G G EA+ +AA
Sbjct: 122 TIEKDIIFGPVSMGVSKEEAKKRAA 146
|
Length = 305 |
| >gnl|CDD|213205 cd03238, ABC_UvrA, ATP-binding cassette domain of the excision repair protein UvrA | Back alignment and domain information |
|---|
Score = 43.1 bits (102), Expect = 2e-04
Identities = 34/114 (29%), Positives = 55/114 (48%), Gaps = 16/114 (14%)
Query: 504 FIDKLPQGID------TLVGEHGTQLSGGQKQRIAIARAILKDPR--ILLLDEATSALDA 555
FID+L ID TL + T LSGG+ QR+ +A + +P + +LDE ++ L
Sbjct: 64 FIDQLQFLIDVGLGYLTLGQKLST-LSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQ 122
Query: 556 ESEKVVQEALDRIMVNRTTVIVA-HRLSTVRNADMI------AVIHRGKIVEKG 602
+ + E + ++ TVI+ H L + +AD I + GK+V G
Sbjct: 123 QDINQLLEVIKGLIDLGNTVILIEHNLDVLSSADWIIDFGPGSGKSGGKVVFSG 176
|
Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. Length = 176 |
| >gnl|CDD|237652 PRK14275, PRK14275, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.7 bits (103), Expect = 3e-04
Identities = 30/93 (32%), Positives = 48/93 (51%), Gaps = 7/93 (7%)
Query: 1057 DVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYD--PD---AGHITLDGVEI-- 1109
+ + + +N I + A++G SG GKST + + R D P G + DG +I
Sbjct: 51 EFEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYG 110
Query: 1110 QKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYG 1142
+ LR+++G+V Q+P F +I NIAYG
Sbjct: 111 KFTDEVLLRKKIGMVFQKPNPFPKSIFDNIAYG 143
|
Length = 286 |
| >gnl|CDD|181939 PRK09544, znuC, high-affinity zinc transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 43.9 bits (104), Expect = 3e-04
Identities = 26/77 (33%), Positives = 43/77 (55%), Gaps = 8/77 (10%)
Query: 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHI 1102
+ L +VS + R +V D++L+++ GK + L+G +G+GKST+V ++ PD G I
Sbjct: 5 VSLENVSVSFGQR---RVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVI 61
Query: 1103 TLD-----GVEIQKLQL 1114
+ G QKL L
Sbjct: 62 KRNGKLRIGYVPQKLYL 78
|
Length = 251 |
| >gnl|CDD|236729 PRK10636, PRK10636, putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 44.4 bits (105), Expect = 3e-04
Identities = 32/100 (32%), Positives = 47/100 (47%), Gaps = 20/100 (20%)
Query: 1068 IRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMGLVSQE 1127
I G+ V LVG++G GKST+++LL+ D G T G W Q+ V+QE
Sbjct: 24 INPGQKVGLVGKNGCGKSTLLALLKNEISADGGSYTFPG--------NW---QLAWVNQE 72
Query: 1128 -PVLFNDTIRANIAYGKGGD----ATEAEIQAASEMANAH 1162
P L + + Y GD EA++ A+E + H
Sbjct: 73 TPAL----PQPALEYVIDGDREYRQLEAQLHDANERNDGH 108
|
Length = 638 |
| >gnl|CDD|213194 cd03227, ABC_Class2, ATP-binding cassette domain of non-transporter proteins | Back alignment and domain information |
|---|
Score = 42.3 bits (100), Expect = 3e-04
Identities = 28/88 (31%), Positives = 40/88 (45%), Gaps = 7/88 (7%)
Query: 522 QLSGGQKQRIAIARAI---LKDPRIL-LLDEATSALDAESEKVVQEALDRIMVNRTTVIV 577
QLSGG+K+ A+A + PR L +LDE LD + + EA+ +V VIV
Sbjct: 77 QLSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQALAEAILEHLVKGAQVIV 136
Query: 578 A-HRLSTVRNADMIAVIHRGKIVEKGTH 604
H AD +IH K++
Sbjct: 137 ITHLPELAELAD--KLIHIKKVITGVYK 162
|
ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterized by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins. Length = 162 |
| >gnl|CDD|213234 cd03267, ABC_NatA_like, ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA | Back alignment and domain information |
|---|
Score = 43.1 bits (102), Expect = 4e-04
Identities = 20/76 (26%), Positives = 41/76 (53%), Gaps = 1/76 (1%)
Query: 1049 SFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVE 1108
S +V+ + ++ I G+ V +G +G+GK+T + +L P +G + + G+
Sbjct: 25 SLFKRKYREVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLV 84
Query: 1109 IQKLQLKWLRQQMGLV 1124
K + K+LR ++G+V
Sbjct: 85 PWKRRKKFLR-RIGVV 99
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single integral membrane protein. Length = 236 |
| >gnl|CDD|184125 PRK13538, PRK13538, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 42.9 bits (102), Expect = 4e-04
Identities = 20/70 (28%), Positives = 37/70 (52%), Gaps = 6/70 (8%)
Query: 1060 VFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKL------Q 1113
+F L+ + AG+ V + G +G+GK++++ +L PDAG + G I++
Sbjct: 16 LFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQRDEYHQD 75
Query: 1114 LKWLRQQMGL 1123
L +L Q G+
Sbjct: 76 LLYLGHQPGI 85
|
Length = 204 |
| >gnl|CDD|233208 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Score = 44.3 bits (105), Expect = 4e-04
Identities = 51/195 (26%), Positives = 80/195 (41%), Gaps = 19/195 (9%)
Query: 400 QIFSGFSISISSGTTAALVGQSGSGKST----VISLIERFYDPQAGEVLIDGINLKEFQL 455
I I G ++G+ GSG ST + S + F+ G + DGI +E +
Sbjct: 75 DILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIKK 134
Query: 456 QWIRKKIGLVSQE----PVLFTGSIKDNIAYGKDDAT-----TEEIRVATELANAAKFID 506
+ R + ++ P L G D A K + E A +A+
Sbjct: 135 HY-RGDVVYNAETDVHFPHLTVGETLDFAARCKTPQNRPDGVSREEY-AKHIADVYMATY 192
Query: 507 KLPQGIDTLVGEHGTQ-LSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEAL 565
L +T VG + +SGG+++R++IA A L +I D AT LD+ + AL
Sbjct: 193 GLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLGGAKIQCWDNATRGLDSATALEFIRAL 252
Query: 566 DRIMVN--RTTVIVA 578
+ N TT +VA
Sbjct: 253 -KTSANILDTTPLVA 266
|
[Transport and binding proteins, Other]. Length = 1394 |
| >gnl|CDD|184198 PRK13638, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 43.1 bits (101), Expect = 5e-04
Identities = 36/108 (33%), Positives = 50/108 (46%), Gaps = 8/108 (7%)
Query: 1050 FKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDG--V 1107
F+Y D V + LNL LVG +G GKST+ L P G + G +
Sbjct: 9 FRYQ---DEPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPL 65
Query: 1108 EIQKLQLKWLRQQMGLVSQEP--VLFNDTIRANIAYG-KGGDATEAEI 1152
+ K L LRQQ+ V Q+P +F I ++IA+ + EAEI
Sbjct: 66 DYSKRGLLALRQQVATVFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEI 113
|
Length = 271 |
| >gnl|CDD|183231 PRK11614, livF, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 42.9 bits (101), Expect = 5e-04
Identities = 29/102 (28%), Positives = 52/102 (50%), Gaps = 5/102 (4%)
Query: 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHI 1102
+ VS Y +Q +++L I G+ V L+G +G+GK+T++ L +G I
Sbjct: 6 LSFDKVSAHYGK---IQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRI 62
Query: 1103 TLDGVEIQKLQL-KWLRQQMGLVSQEPVLFND-TIRANIAYG 1142
DG +I Q K +R+ + +V + +F+ T+ N+A G
Sbjct: 63 VFDGKDITDWQTAKIMREAVAIVPEGRRVFSRMTVEENLAMG 104
|
Length = 237 |
| >gnl|CDD|236755 PRK10762, PRK10762, D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.8 bits (104), Expect = 5e-04
Identities = 55/219 (25%), Positives = 99/219 (45%), Gaps = 43/219 (19%)
Query: 406 SISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDG--INLKEFQ------LQW 457
S ++ G + G G+G++ ++ ++ +G V +DG + + Q + +
Sbjct: 272 SFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRSPQDGLANGIVY 331
Query: 458 I---RKKIGLVSQEPVLFTGSIKDNI---AYGKDDATTEEIRVATELANAAKFID----K 507
I RK+ GLV S+K+N+ A ++ A E + FI K
Sbjct: 332 ISEDRKRDGLV------LGMSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIK 385
Query: 508 LPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVV------ 561
P ++ +G LSGG +Q++AIAR ++ P++L+LDE T +D ++K +
Sbjct: 386 TP-SMEQAIGL----LSGGNQQKVAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQ 440
Query: 562 --QEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKI 598
E L I+V+ V + +D I V+H G+I
Sbjct: 441 FKAEGLSIILVSSEMPEV------LGMSDRILVMHEGRI 473
|
Length = 501 |
| >gnl|CDD|184129 PRK13543, PRK13543, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 42.5 bits (100), Expect = 5e-04
Identities = 19/61 (31%), Positives = 37/61 (60%), Gaps = 3/61 (4%)
Query: 1046 HHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLD 1105
H ++F SR + VF L+ + AG+ + + G++G+GK+T++ +L ++G I +D
Sbjct: 15 HALAF---SRNEEPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQID 71
Query: 1106 G 1106
G
Sbjct: 72 G 72
|
Length = 214 |
| >gnl|CDD|184585 PRK14239, PRK14239, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 42.8 bits (101), Expect = 6e-04
Identities = 29/88 (32%), Positives = 46/88 (52%), Gaps = 7/88 (7%)
Query: 1062 RDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYD--PD---AGHITLDGVEI--QKLQL 1114
++L + AL+G SGSGKST++ + R D P+ G I +G I +
Sbjct: 22 NSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDT 81
Query: 1115 KWLRQQMGLVSQEPVLFNDTIRANIAYG 1142
LR+++G+V Q+P F +I N+ YG
Sbjct: 82 VDLRKEIGMVFQQPNPFPMSIYENVVYG 109
|
Length = 252 |
| >gnl|CDD|215640 PLN03232, PLN03232, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 43.8 bits (103), Expect = 7e-04
Identities = 29/100 (29%), Positives = 47/100 (47%), Gaps = 12/100 (12%)
Query: 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHI 1102
I + + F + S+ D+NL+I G VA+VG +G GK++++S + + H
Sbjct: 615 ISIKNGYFSWDSKTSKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAML----GELSHA 670
Query: 1103 TLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYG 1142
V I R + V Q +FN T+R NI +G
Sbjct: 671 ETSSVVI--------RGSVAYVPQVSWIFNATVRENILFG 702
|
Length = 1495 |
| >gnl|CDD|240327 PTZ00243, PTZ00243, ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 43.6 bits (103), Expect = 7e-04
Identities = 27/89 (30%), Positives = 47/89 (52%), Gaps = 16/89 (17%)
Query: 1052 YPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVV-SLLQRFYDPDAGHITLDGVEIQ 1110
+ P V + RD+++ + GK ++G +GSGKST++ SLL +F EI
Sbjct: 668 FELEPKV-LLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQF-------------EIS 713
Query: 1111 KLQLKWLRQQMGLVSQEPVLFNDTIRANI 1139
+ ++ W + + V Q+ + N T+R NI
Sbjct: 714 EGRV-WAERSIAYVPQQAWIMNATVRGNI 741
|
Length = 1560 |
| >gnl|CDD|182592 PRK10619, PRK10619, histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 42.3 bits (99), Expect = 7e-04
Identities = 24/81 (29%), Positives = 41/81 (50%), Gaps = 13/81 (16%)
Query: 1059 QVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQ-------- 1110
+V + ++L+ AG ++++G SGSGKST + + P G I ++G I
Sbjct: 19 EVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQ 78
Query: 1111 -----KLQLKWLRQQMGLVSQ 1126
K QL+ LR ++ +V Q
Sbjct: 79 LKVADKNQLRLLRTRLTMVFQ 99
|
Length = 257 |
| >gnl|CDD|233665 TIGR01978, sufC, FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Score = 42.2 bits (100), Expect = 7e-04
Identities = 17/58 (29%), Positives = 34/58 (58%), Gaps = 2/58 (3%)
Query: 1057 DVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLL--QRFYDPDAGHITLDGVEIQKL 1112
D ++ + +NL ++ G+ A++G +GSGKST+ + Y+ +G I G ++ +L
Sbjct: 12 DKEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLEL 69
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PMID:12554644) or associated with the membrane (PMID:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 243 |
| >gnl|CDD|183077 PRK11288, araG, L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.4 bits (103), Expect = 7e-04
Identities = 59/212 (27%), Positives = 94/212 (44%), Gaps = 25/212 (11%)
Query: 405 FSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDG--INLKEFQLQWIRKKI 462
S S+ +G L G G+G+S ++ L+ AG+V +DG I+++ + IR I
Sbjct: 272 ISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPIDIRSPR-DAIRAGI 330
Query: 463 GLV----SQEPVLFTGSIKDNI---AYGKDDATTEEIRVATELANAAKFIDKL---PQGI 512
L E ++ S+ DNI A I E NA +FI L
Sbjct: 331 MLCPEDRKAEGIIPVHSVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIKTPSR 390
Query: 513 DTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALD--AESE--KVVQEALDRI 568
+ L+ LSGG +Q+ + R + +D +++LLDE T +D A+ E V+ E +
Sbjct: 391 EQLIM----NLSGGNQQKAILGRWLSEDMKVILLDEPTRGIDVGAKHEIYNVIYELAAQ- 445
Query: 569 MVNRTTVIVAHRLSTVRN-ADMIAVIHRGKIV 599
+ V+ L V AD I V+ G+I
Sbjct: 446 --GVAVLFVSSDLPEVLGVADRIVVMREGRIA 475
|
Length = 501 |
| >gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular activities | Back alignment and domain information |
|---|
Score = 41.2 bits (96), Expect = 7e-04
Identities = 19/67 (28%), Positives = 30/67 (44%), Gaps = 1/67 (1%)
Query: 1071 GKTVALVGESGSGKSTVVSLLQRFYDPDAGH-ITLDGVEIQKLQLKWLRQQMGLVSQEPV 1129
G+ + +VG GSGK+T+ L R P G I +DG +I + L L + +
Sbjct: 2 GEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASG 61
Query: 1130 LFNDTIR 1136
+R
Sbjct: 62 SGELRLR 68
|
AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. Length = 148 |
| >gnl|CDD|213201 cd03234, ABCG_White, White pigment protein homolog of ABCG transporter subfamily | Back alignment and domain information |
|---|
Score = 41.9 bits (99), Expect = 8e-04
Identities = 18/78 (23%), Positives = 39/78 (50%), Gaps = 7/78 (8%)
Query: 1055 RPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDA---GHITLDGVEIQK 1111
++ D++L + +G+ +A++G SGSGK+T++ + + G I +G +
Sbjct: 17 NKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKP 76
Query: 1112 LQLK----WLRQQMGLVS 1125
Q + ++RQ L+
Sbjct: 77 DQFQKCVAYVRQDDILLP 94
|
The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners. Length = 226 |
| >gnl|CDD|183244 PRK11629, lolD, lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 42.1 bits (99), Expect = 8e-04
Identities = 33/109 (30%), Positives = 51/109 (46%), Gaps = 7/109 (6%)
Query: 1060 VFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKL----QLK 1115
V +++ I G+ +A+VG SGSGKST++ LL P +G + +G + KL + +
Sbjct: 24 VLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAE 83
Query: 1116 WLRQQMGLVSQEPVLFND-TIRANIAYGK--GGDATEAEIQAASEMANA 1161
Q++G + Q L D T N+A G A EM A
Sbjct: 84 LRNQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEINSRALEMLAA 132
|
Length = 233 |
| >gnl|CDD|184596 PRK14267, PRK14267, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 41.8 bits (98), Expect = 0.001
Identities = 30/92 (32%), Positives = 47/92 (51%), Gaps = 8/92 (8%)
Query: 1059 QVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYD--PDA---GHITLDGVEI--QK 1111
V + ++LKI AL+G SG GKST++ R + +A G + L G I
Sbjct: 18 HVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPD 77
Query: 1112 LQLKWLRQQMGLVSQEPVLF-NDTIRANIAYG 1142
+ +R+++G+V Q P F + TI N+A G
Sbjct: 78 VDPIEVRREVGMVFQYPNPFPHLTIYDNVAIG 109
|
Length = 253 |
| >gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Score = 42.3 bits (100), Expect = 0.001
Identities = 50/220 (22%), Positives = 91/220 (41%), Gaps = 40/220 (18%)
Query: 402 FSGFSISISSGTTAALVGQSGSGKSTVISLIERFY---DPQAGEVLIDGINLKEFQLQWI 458
F S+ + +G L G G+G++ L E Y + G ++++G +
Sbjct: 279 FRNISLEVRAGEILGLAGVVGAGRT---ELAETLYGLRPARGGRIMLNGKEINALSTA-Q 334
Query: 459 RKKIGLV-----SQEPVLF--------TGSIKDN-----IAYGKDDATTEEIRVATELAN 500
R GLV Q L+ ++ N I +++A E R A +
Sbjct: 335 RLARGLVYLPEDRQSSGLYLDAPLAWNVCALTHNRRGFWIKPARENAVLERYRRALNI-- 392
Query: 501 AAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKV 560
KF Q TL SGG +Q++ IA+ + P++L++DE T +D +
Sbjct: 393 --KFNH-AEQAARTL--------SGGNQQKVLIAKCLEASPQLLIVDEPTRGVDVSARND 441
Query: 561 VQEALDRIMVNRTTVI-VAHRLSTVRN-ADMIAVIHRGKI 598
+ + + I V+ ++ L + AD + V+H+G+I
Sbjct: 442 IYQLIRSIAAQNVAVLFISSDLEEIEQMADRVLVMHQGEI 481
|
Length = 510 |
| >gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 42.6 bits (101), Expect = 0.001
Identities = 30/91 (32%), Positives = 49/91 (53%), Gaps = 18/91 (19%)
Query: 1056 PDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDA---GHITLDGVEIQKL 1112
V+ +++LK+RAG+ V+L GE+G+GKST++ +L Y P G I +G ++L
Sbjct: 16 GGVKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVY-PHGTYEGEIIFEG---EEL 71
Query: 1113 QLKWLR-----------QQMGLVSQEPVLFN 1132
Q +R Q++ LV + VL N
Sbjct: 72 QASNIRDTERAGIAIIHQELALVKELSVLEN 102
|
Length = 506 |
| >gnl|CDD|237894 PRK15064, PRK15064, ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 42.6 bits (101), Expect = 0.001
Identities = 19/57 (33%), Positives = 35/57 (61%), Gaps = 2/57 (3%)
Query: 523 LSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAH 579
LSGG+K R+ + +++ P +L++DE T+ +D ES + + AL+ T + V+H
Sbjct: 439 LSGGEKGRMLFGKLMMQKPNVLVMDEPTNHMDMESIESLNMALE--KYEGTLIFVSH 493
|
Length = 530 |
| >gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Score = 42.1 bits (99), Expect = 0.002
Identities = 17/62 (27%), Positives = 38/62 (61%), Gaps = 5/62 (8%)
Query: 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRF--YDPDAG 1100
IE+ +++ K+ +V ++++ I G+ + ++G SG+GKS ++ +L+ Y+P +G
Sbjct: 1 IEVKNLTKKFD---GKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSG 57
Query: 1101 HI 1102
I
Sbjct: 58 RI 59
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520 |
| >gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Score = 42.2 bits (100), Expect = 0.002
Identities = 44/189 (23%), Positives = 84/189 (44%), Gaps = 30/189 (15%)
Query: 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 443
IE ++ + + + S + G ++G +G+GKST+ +I P +G +
Sbjct: 323 IEAENLSKGFGDKL---LIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTI 379
Query: 444 LI-DGINLKEFQLQWIRKKIGLVSQEPVLFTG--SIKDNIAYGKDDATTEEIRVATELAN 500
I + + K+ V Q ++ + I+ G D I++
Sbjct: 380 KIGETV------------KLAYVDQSRDALDPNKTVWEEISGGLD-----IIQLGKREVP 422
Query: 501 AAKFIDKLP-QGID--TLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAES 557
+ ++ + +G D VG QLSGG++ R+ +A+ + +LLLDE T+ LD E+
Sbjct: 423 SRAYVGRFNFKGSDQQKKVG----QLSGGERNRVHLAKTLKSGGNVLLLDEPTNDLDVET 478
Query: 558 EKVVQEALD 566
+ ++EAL
Sbjct: 479 LRALEEALL 487
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. Length = 552 |
| >gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 42.1 bits (99), Expect = 0.002
Identities = 51/225 (22%), Positives = 101/225 (44%), Gaps = 24/225 (10%)
Query: 406 SISISSGTTAALVGQSGSGKSTVISLIERF-YDPQA-GEVLIDGINLK-EFQLQWIRKKI 462
S S+ G G GSG++ +++ + F D +A GE+ ++G ++ L ++K +
Sbjct: 283 SFSVCRGEILGFAGLVGSGRTELMNCL--FGVDKRAGGEIRLNGKDISPRSPLDAVKKGM 340
Query: 463 GLVSQ---EPVLFTG-SIKDNIAY------GKDDATTEEIRVATELANAAKFIDKLPQGI 512
+++ + F SI N+A G E A + L
Sbjct: 341 AYITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKC 400
Query: 513 DTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALD----AESEKVVQEALDRI 568
+ V ++ T+LSGG +Q++ I++ + P +++ DE T +D AE KV+++ D
Sbjct: 401 HS-VNQNITELSGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLADD- 458
Query: 569 MVNRTTVIVAHRLSTVRNA-DMIAVIHRGKIVEKGTHSKLVEDPE 612
+ ++V+ L + D IAV G++ + T+ + + E
Sbjct: 459 --GKVILMVSSELPEIITVCDRIAVFCEGRLTQILTNRDDMSEEE 501
|
Length = 510 |
| >gnl|CDD|236861 PRK11147, PRK11147, ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Score = 41.9 bits (99), Expect = 0.002
Identities = 23/57 (40%), Positives = 38/57 (66%), Gaps = 2/57 (3%)
Query: 523 LSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAH 579
LSGG++ R+ +AR LK +L+LDE T+ LD E+ ++++E LD T ++V+H
Sbjct: 441 LSGGERNRLLLARLFLKPSNLLILDEPTNDLDVETLELLEELLDS--YQGTVLLVSH 495
|
Length = 635 |
| >gnl|CDD|213258 cd03291, ABCC_CFTR1, ATP-binding cassette domain of the cystic fibrosis transmembrane regulator, subfamily C | Back alignment and domain information |
|---|
Score = 40.6 bits (95), Expect = 0.003
Identities = 24/83 (28%), Positives = 42/83 (50%), Gaps = 13/83 (15%)
Query: 1060 VFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQ 1119
V +++NLKI G+ +A+ G +GSGK++++ L+ +P G I G
Sbjct: 52 VLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSG------------- 98
Query: 1120 QMGLVSQEPVLFNDTIRANIAYG 1142
++ SQ + TI+ NI +G
Sbjct: 99 RISFSSQFSWIMPGTIKENIIFG 121
|
The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. Length = 282 |
| >gnl|CDD|172744 PRK14256, PRK14256, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 40.4 bits (94), Expect = 0.003
Identities = 25/77 (32%), Positives = 43/77 (55%), Gaps = 7/77 (9%)
Query: 1062 RDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYD--PDA---GHITLDGVEI--QKLQL 1114
+D+++ A++G SG GKSTV+ + R +D P A G I LD +I + +
Sbjct: 21 KDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVDP 80
Query: 1115 KWLRQQMGLVSQEPVLF 1131
+R+++G+V Q+P F
Sbjct: 81 VSIRRRVGMVFQKPNPF 97
|
Length = 252 |
| >gnl|CDD|236688 PRK10418, nikD, nickel transporter ATP-binding protein NikD; Provisional | Back alignment and domain information |
|---|
Score = 40.8 bits (96), Expect = 0.003
Identities = 23/77 (29%), Positives = 38/77 (49%), Gaps = 8/77 (10%)
Query: 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPD---- 1098
IEL +++ ++P V ++L ++ G+ +ALVG SGSGKS +
Sbjct: 5 IELRNIAL-QAAQPLV---HGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQT 60
Query: 1099 AGHITLDGVEIQKLQLK 1115
AG + LDG + L+
Sbjct: 61 AGRVLLDGKPVAPCALR 77
|
Length = 254 |
| >gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Score = 41.2 bits (97), Expect = 0.003
Identities = 22/64 (34%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
Query: 1061 FRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQ 1120
FR+++L++RAG+ + L G G+G++ + L G I L+G EI L R
Sbjct: 279 FRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTA-QRLA 337
Query: 1121 MGLV 1124
GLV
Sbjct: 338 RGLV 341
|
Length = 510 |
| >gnl|CDD|236729 PRK10636, PRK10636, putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 41.7 bits (98), Expect = 0.003
Identities = 48/179 (26%), Positives = 78/179 (43%), Gaps = 48/179 (26%)
Query: 406 SISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLV 465
+ +I+ G LVG++G GKST+++L++ G G +QL W V
Sbjct: 21 TATINPGQKVGLVGKNGCGKSTLLALLKNEISADGGSYTFPG----NWQLAW-------V 69
Query: 466 SQE-PVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGE------ 518
+QE P L +++ I D E ++ +L +A + D I T+ G+
Sbjct: 70 NQETPALPQPALEYVI-----DGDREYRQLEAQLHDANERNDG--HAIATIHGKLDAIDA 122
Query: 519 -----------HG-----TQL-------SGGQKQRIAIARAILKDPRILLLDEATSALD 554
HG QL SGG + R+ +A+A++ +LLLDE T+ LD
Sbjct: 123 WTIRSRAASLLHGLGFSNEQLERPVSDFSGGWRMRLNLAQALICRSDLLLLDEPTNHLD 181
|
Length = 638 |
| >gnl|CDD|213190 cd03223, ABCD_peroxisomal_ALDP, ATP-binding cassette domain of peroxisomal transporter, subfamily D | Back alignment and domain information |
|---|
Score = 39.1 bits (92), Expect = 0.004
Identities = 15/44 (34%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
Query: 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKST 1086
IEL ++S P + +DL+ +I+ G + + G SG+GKS+
Sbjct: 1 IELENLSLATPD--GRVLLKDLSFEIKPGDRLLITGPSGTGKSS 42
|
Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asymptomatic). Length = 166 |
| >gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 40.6 bits (95), Expect = 0.004
Identities = 26/91 (28%), Positives = 47/91 (51%), Gaps = 6/91 (6%)
Query: 1057 DVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDA---GHITLDGVEIQKLQ 1113
V+ ++L++R G+ V L GE+G+GKST++ +L Y P G I G ++
Sbjct: 13 GVKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVY-PHGTWDGEIYWSGSPLKASN 71
Query: 1114 LKWL-RQQMGLVSQEPVLFND-TIRANIAYG 1142
++ R + ++ QE L + ++ NI G
Sbjct: 72 IRDTERAGIVIIHQELTLVPELSVAENIFLG 102
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 500 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 1198 | |||
| KOG0055 | 1228 | consensus Multidrug/pheromone exporter, ABC superf | 100.0 | |
| PTZ00265 | 1466 | multidrug resistance protein (mdr1); Provisional | 100.0 | |
| KOG0054 | 1381 | consensus Multidrug resistance-associated protein/ | 100.0 | |
| PLN03130 | 1622 | ABC transporter C family member; Provisional | 100.0 | |
| PLN03232 | 1495 | ABC transporter C family member; Provisional | 100.0 | |
| TIGR00957 | 1522 | MRP_assoc_pro multi drug resistance-associated pro | 100.0 | |
| PTZ00243 | 1560 | ABC transporter; Provisional | 100.0 | |
| TIGR01271 | 1490 | CFTR_protein cystic fibrosis transmembrane conduct | 100.0 | |
| KOG0058 | 716 | consensus Peptide exporter, ABC superfamily [Intra | 100.0 | |
| KOG0055 | 1228 | consensus Multidrug/pheromone exporter, ABC superf | 100.0 | |
| COG2274 | 709 | SunT ABC-type bacteriocin/lantibiotic exporters, c | 100.0 | |
| KOG0054 | 1381 | consensus Multidrug resistance-associated protein/ | 100.0 | |
| PRK11174 | 588 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| PTZ00265 | 1466 | multidrug resistance protein (mdr1); Provisional | 100.0 | |
| TIGR00958 | 711 | 3a01208 Conjugate Transporter-2 (CT2) Family prote | 100.0 | |
| COG1132 | 567 | MdlB ABC-type multidrug transport system, ATPase a | 100.0 | |
| TIGR03797 | 686 | NHPM_micro_ABC2 NHPM bacteriocin system ABC transp | 100.0 | |
| TIGR00957 | 1522 | MRP_assoc_pro multi drug resistance-associated pro | 100.0 | |
| KOG0058 | 716 | consensus Peptide exporter, ABC superfamily [Intra | 100.0 | |
| PLN03130 | 1622 | ABC transporter C family member; Provisional | 100.0 | |
| TIGR01193 | 708 | bacteriocin_ABC ABC-type bacteriocin transporter. | 100.0 | |
| TIGR03796 | 710 | NHPM_micro_ABC1 NHPM bacteriocin system ABC transp | 100.0 | |
| COG4988 | 559 | CydD ABC-type transport system involved in cytochr | 100.0 | |
| PRK11160 | 574 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| TIGR03375 | 694 | type_I_sec_LssB type I secretion system ATPase, Ls | 100.0 | |
| PRK11176 | 582 | lipid transporter ATP-binding/permease protein; Pr | 100.0 | |
| PTZ00243 | 1560 | ABC transporter; Provisional | 100.0 | |
| PLN03232 | 1495 | ABC transporter C family member; Provisional | 100.0 | |
| PRK10790 | 592 | putative multidrug transporter membrane\ATP-bindin | 100.0 | |
| TIGR02203 | 571 | MsbA_lipidA lipid A export permease/ATP-binding pr | 100.0 | |
| TIGR01846 | 694 | type_I_sec_HlyB type I secretion system ABC transp | 100.0 | |
| KOG0057 | 591 | consensus Mitochondrial Fe/S cluster exporter, ABC | 100.0 | |
| KOG0056 | 790 | consensus Heavy metal exporter HMT1, ABC superfami | 100.0 | |
| PRK13657 | 588 | cyclic beta-1,2-glucan ABC transporter; Provisiona | 100.0 | |
| TIGR02204 | 576 | MsbA_rel ABC transporter, permease/ATP-binding pro | 100.0 | |
| TIGR02868 | 529 | CydC thiol reductant ABC exporter, CydC subunit. T | 100.0 | |
| PRK10789 | 569 | putative multidrug transporter membrane\ATP-bindin | 100.0 | |
| TIGR01271 | 1490 | CFTR_protein cystic fibrosis transmembrane conduct | 100.0 | |
| COG4987 | 573 | CydC ABC-type transport system involved in cytochr | 100.0 | |
| TIGR01192 | 585 | chvA glucan exporter ATP-binding protein. This mod | 100.0 | |
| TIGR02857 | 529 | CydD thiol reductant ABC exporter, CydD subunit. U | 100.0 | |
| TIGR01842 | 544 | type_I_sec_PrtD type I secretion system ABC transp | 100.0 | |
| COG5265 | 497 | ATM1 ABC-type transport system involved in Fe-S cl | 100.0 | |
| TIGR01194 | 555 | cyc_pep_trnsptr cyclic peptide transporter. This m | 100.0 | |
| COG4618 | 580 | ArpD ABC-type protease/lipase transport system, AT | 100.0 | |
| COG2274 | 709 | SunT ABC-type bacteriocin/lantibiotic exporters, c | 100.0 | |
| PRK10522 | 547 | multidrug transporter membrane component/ATP-bindi | 100.0 | |
| TIGR02868 | 529 | CydC thiol reductant ABC exporter, CydC subunit. T | 100.0 | |
| TIGR00958 | 711 | 3a01208 Conjugate Transporter-2 (CT2) Family prote | 100.0 | |
| COG1132 | 567 | MdlB ABC-type multidrug transport system, ATPase a | 100.0 | |
| PRK11174 | 588 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| TIGR01193 | 708 | bacteriocin_ABC ABC-type bacteriocin transporter. | 100.0 | |
| TIGR03797 | 686 | NHPM_micro_ABC2 NHPM bacteriocin system ABC transp | 100.0 | |
| TIGR00954 | 659 | 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FA | 100.0 | |
| PRK11160 | 574 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| TIGR03375 | 694 | type_I_sec_LssB type I secretion system ATPase, Ls | 100.0 | |
| TIGR03796 | 710 | NHPM_micro_ABC1 NHPM bacteriocin system ABC transp | 100.0 | |
| TIGR02857 | 529 | CydD thiol reductant ABC exporter, CydD subunit. U | 100.0 | |
| TIGR01846 | 694 | type_I_sec_HlyB type I secretion system ABC transp | 100.0 | |
| KOG0056 | 790 | consensus Heavy metal exporter HMT1, ABC superfami | 100.0 | |
| PRK11176 | 582 | lipid transporter ATP-binding/permease protein; Pr | 100.0 | |
| TIGR02203 | 571 | MsbA_lipidA lipid A export permease/ATP-binding pr | 100.0 | |
| PRK10790 | 592 | putative multidrug transporter membrane\ATP-bindin | 100.0 | |
| TIGR02204 | 576 | MsbA_rel ABC transporter, permease/ATP-binding pro | 100.0 | |
| TIGR01192 | 585 | chvA glucan exporter ATP-binding protein. This mod | 100.0 | |
| COG4988 | 559 | CydD ABC-type transport system involved in cytochr | 100.0 | |
| PRK10789 | 569 | putative multidrug transporter membrane\ATP-bindin | 100.0 | |
| PRK13657 | 588 | cyclic beta-1,2-glucan ABC transporter; Provisiona | 100.0 | |
| KOG0057 | 591 | consensus Mitochondrial Fe/S cluster exporter, ABC | 100.0 | |
| COG4987 | 573 | CydC ABC-type transport system involved in cytochr | 100.0 | |
| TIGR01194 | 555 | cyc_pep_trnsptr cyclic peptide transporter. This m | 100.0 | |
| TIGR01842 | 544 | type_I_sec_PrtD type I secretion system ABC transp | 100.0 | |
| COG5265 | 497 | ATM1 ABC-type transport system involved in Fe-S cl | 100.0 | |
| PRK13549 | 506 | xylose transporter ATP-binding subunit; Provisiona | 100.0 | |
| COG1123 | 539 | ATPase components of various ABC-type transport sy | 100.0 | |
| PRK10261 | 623 | glutathione transporter ATP-binding protein; Provi | 100.0 | |
| PRK09700 | 510 | D-allose transporter ATP-binding protein; Provisio | 100.0 | |
| PRK15134 | 529 | microcin C ABC transporter ATP-binding protein Yej | 100.0 | |
| PRK10762 | 501 | D-ribose transporter ATP binding protein; Provisio | 100.0 | |
| TIGR01257 | 2272 | rim_protein retinal-specific rim ABC transporter. | 100.0 | |
| TIGR02633 | 500 | xylG D-xylose ABC transporter, ATP-binding protein | 100.0 | |
| TIGR03269 | 520 | met_CoM_red_A2 methyl coenzyme M reductase system, | 100.0 | |
| cd03289 | 275 | ABCC_CFTR2 The CFTR subfamily domain 2. The cystic | 100.0 | |
| PRK11288 | 501 | araG L-arabinose transporter ATP-binding protein; | 100.0 | |
| PRK10938 | 490 | putative molybdenum transport ATP-binding protein | 100.0 | |
| TIGR00956 | 1394 | 3a01205 Pleiotropic Drug Resistance (PDR) Family p | 100.0 | |
| PRK15439 | 510 | autoinducer 2 ABC transporter ATP-binding protein | 100.0 | |
| PRK10982 | 491 | galactose/methyl galaxtoside transporter ATP-bindi | 100.0 | |
| PRK10522 | 547 | multidrug transporter membrane component/ATP-bindi | 100.0 | |
| COG1126 | 240 | GlnQ ABC-type polar amino acid transport system, A | 100.0 | |
| COG4618 | 580 | ArpD ABC-type protease/lipase transport system, AT | 100.0 | |
| PRK15064 | 530 | ABC transporter ATP-binding protein; Provisional | 100.0 | |
| PRK11819 | 556 | putative ABC transporter ATP-binding protein; Revi | 100.0 | |
| TIGR00954 | 659 | 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FA | 100.0 | |
| TIGR03719 | 552 | ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa | 100.0 | |
| PRK14257 | 329 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG1135 | 339 | AbcC ABC-type metal ion transport system, ATPase c | 100.0 | |
| COG1117 | 253 | PstB ABC-type phosphate transport system, ATPase c | 100.0 | |
| PLN03140 | 1470 | ABC transporter G family member; Provisional | 100.0 | |
| COG1125 | 309 | OpuBA ABC-type proline/glycine betaine transport s | 100.0 | |
| COG4172 | 534 | ABC-type uncharacterized transport system, duplica | 100.0 | |
| PRK10636 | 638 | putative ABC transporter ATP-binding protein; Prov | 100.0 | |
| cd03252 | 237 | ABCC_Hemolysin The ABC-transporter hemolysin B is | 100.0 | |
| cd03288 | 257 | ABCC_SUR2 The SUR domain 2. The sulfonylurea recep | 100.0 | |
| PRK11147 | 635 | ABC transporter ATPase component; Reviewed | 100.0 | |
| cd03254 | 229 | ABCC_Glucan_exporter_like Glucan exporter ATP-bind | 100.0 | |
| COG3839 | 338 | MalK ABC-type sugar transport systems, ATPase comp | 100.0 | |
| cd03251 | 234 | ABCC_MsbA MsbA is an essential ABC transporter, cl | 100.0 | |
| COG1120 | 258 | FepC ABC-type cobalamin/Fe3+-siderophores transpor | 100.0 | |
| cd03253 | 236 | ABCC_ATM1_transporter ATM1 is an ABC transporter t | 100.0 | |
| cd03249 | 238 | ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) | 100.0 | |
| COG1127 | 263 | Ttg2A ABC-type transport system involved in resist | 100.0 | |
| COG0488 | 530 | Uup ATPase components of ABC transporters with dup | 100.0 | |
| cd03244 | 221 | ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. | 100.0 | |
| COG1116 | 248 | TauB ABC-type nitrate/sulfonate/bicarbonate transp | 100.0 | |
| PLN03073 | 718 | ABC transporter F family; Provisional | 100.0 | |
| TIGR02314 | 343 | ABC_MetN D-methionine ABC transporter, ATP-binding | 100.0 | |
| COG4615 | 546 | PvdE ABC-type siderophore export system, fused ATP | 100.0 | |
| COG1122 | 235 | CbiO ABC-type cobalt transport system, ATPase comp | 100.0 | |
| cd03245 | 220 | ABCC_bacteriocin_exporters ABC-type bacteriocin ex | 100.0 | |
| COG3840 | 231 | ThiQ ABC-type thiamine transport system, ATPase co | 100.0 | |
| COG3842 | 352 | PotA ABC-type spermidine/putrescine transport syst | 100.0 | |
| COG1136 | 226 | SalX ABC-type antimicrobial peptide transport syst | 100.0 | |
| COG2884 | 223 | FtsE Predicted ATPase involved in cell division [C | 100.0 | |
| COG1124 | 252 | DppF ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| COG3638 | 258 | ABC-type phosphate/phosphonate transport system, A | 100.0 | |
| PRK13631 | 320 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| COG1121 | 254 | ZnuC ABC-type Mn/Zn transport systems, ATPase comp | 100.0 | |
| cd03248 | 226 | ABCC_TAP TAP, the Transporter Associated with Anti | 100.0 | |
| PRK13409 | 590 | putative ATPase RIL; Provisional | 100.0 | |
| COG1118 | 345 | CysA ABC-type sulfate/molybdate transport systems, | 100.0 | |
| cd03260 | 227 | ABC_PstB_phosphate_transporter Phosphate uptake is | 100.0 | |
| PRK14269 | 246 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03261 | 235 | ABC_Org_Solvent_Resistant ABC (ATP-binding cassett | 100.0 | |
| COG3845 | 501 | ABC-type uncharacterized transport systems, ATPase | 100.0 | |
| PRK13650 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR01186 | 363 | proV glycine betaine/L-proline transport ATP bindi | 100.0 | |
| COG1129 | 500 | MglA ABC-type sugar transport system, ATPase compo | 100.0 | |
| PRK11432 | 351 | fbpC ferric transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11650 | 356 | ugpC glycerol-3-phosphate transporter ATP-binding | 100.0 | |
| cd03369 | 207 | ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-ty | 100.0 | |
| PRK13637 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11153 | 343 | metN DL-methionine transporter ATP-binding subunit | 100.0 | |
| PRK14250 | 241 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03219 | 236 | ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans | 100.0 | |
| PRK13643 | 288 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR03265 | 353 | PhnT2 putative 2-aminoethylphosphonate ABC transpo | 100.0 | |
| COG4178 | 604 | ABC-type uncharacterized transport system, permeas | 100.0 | |
| TIGR00972 | 247 | 3a0107s01c2 phosphate ABC transporter, ATP-binding | 100.0 | |
| PRK14273 | 254 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13647 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13646 | 286 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK10744 | 260 | pstB phosphate transporter ATP-binding protein; Pr | 100.0 | |
| PRK14242 | 253 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK13634 | 290 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13635 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03224 | 222 | ABC_TM1139_LivF_branched LivF (TM1139) is part of | 100.0 | |
| cd03296 | 239 | ABC_CysA_sulfate_importer Part of the ABC transpor | 100.0 | |
| PRK14235 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| cd03295 | 242 | ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin | 100.0 | |
| PRK10851 | 353 | sulfate/thiosulfate transporter subunit; Provision | 100.0 | |
| TIGR03258 | 362 | PhnT 2-aminoethylphosphonate ABC transport system, | 100.0 | |
| cd03256 | 241 | ABC_PhnC_transporter ABC-type phosphate/phosphonat | 100.0 | |
| TIGR00960 | 216 | 3a0501s02 Type II (General) Secretory Pathway (IIS | 100.0 | |
| cd03291 | 282 | ABCC_CFTR1 The CFTR subfamily domain 1. The cystic | 100.0 | |
| cd03250 | 204 | ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. | 100.0 | |
| PRK09452 | 375 | potA putrescine/spermidine ABC transporter ATPase | 100.0 | |
| cd03258 | 233 | ABC_MetN_methionine_transporter MetN (also known a | 100.0 | |
| PRK13651 | 305 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| cd03294 | 269 | ABC_Pro_Gly_Bertaine This family comprises the gly | 100.0 | |
| cd03263 | 220 | ABC_subfamily_A The ABCA subfamily mediates the tr | 100.0 | |
| TIGR02315 | 243 | ABC_phnC phosphonate ABC transporter, ATP-binding | 100.0 | |
| PRK09536 | 402 | btuD corrinoid ABC transporter ATPase; Reviewed | 100.0 | |
| PRK13636 | 283 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14259 | 269 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14267 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14274 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03218 | 232 | ABC_YhbG The ABC transporters belonging to the Yhb | 100.0 | |
| TIGR03864 | 236 | PQQ_ABC_ATP ABC transporter, ATP-binding subunit, | 100.0 | |
| PRK11000 | 369 | maltose/maltodextrin transporter ATP-binding prote | 100.0 | |
| PRK14247 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG0410 | 237 | LivF ABC-type branched-chain amino acid transport | 100.0 | |
| PRK13632 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK15079 | 331 | oligopeptide ABC transporter ATP-binding protein O | 100.0 | |
| PRK11629 | 233 | lolD lipoprotein transporter ATP-binding subunit; | 100.0 | |
| PRK14251 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13642 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03266 | 218 | ABC_NatA_sodium_exporter NatA is the ATPase compon | 100.0 | |
| PRK13640 | 282 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03259 | 213 | ABC_Carb_Solutes_like ABC Carbohydrate and Solute | 100.0 | |
| PRK14236 | 272 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK13537 | 306 | nodulation ABC transporter NodI; Provisional | 100.0 | |
| PRK14248 | 268 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03247 | 178 | ABCC_cytochrome_bd The CYD subfamily implicated in | 100.0 | |
| PRK14240 | 250 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14237 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK11831 | 269 | putative ABC transporter ATP-binding protein YrbF; | 100.0 | |
| cd03255 | 218 | ABC_MJ0796_Lo1CDE_FtsE This family is comprised of | 100.0 | |
| PRK14268 | 258 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03226 | 205 | ABC_cobalt_CbiO_domain2 Domain II of the ABC compo | 100.0 | |
| PRK11614 | 237 | livF leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| PRK11607 | 377 | potG putrescine transporter ATP-binding subunit; P | 100.0 | |
| PRK14249 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13644 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14245 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03264 | 211 | ABC_drug_resistance_like ABC-type multidrug transp | 100.0 | |
| PRK13645 | 289 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14239 | 252 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK13648 | 269 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13633 | 280 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK09493 | 240 | glnQ glutamine ABC transporter ATP-binding protein | 100.0 | |
| TIGR03005 | 252 | ectoine_ehuA ectoine/hydroxyectoine ABC transporte | 100.0 | |
| PRK10575 | 265 | iron-hydroxamate transporter ATP-binding subunit; | 100.0 | |
| TIGR02211 | 221 | LolD_lipo_ex lipoprotein releasing system, ATP-bin | 100.0 | |
| TIGR03410 | 230 | urea_trans_UrtE urea ABC transporter, ATP-binding | 100.0 | |
| PRK14238 | 271 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| TIGR02769 | 265 | nickel_nikE nickel import ATP-binding protein NikE | 100.0 | |
| PRK11264 | 250 | putative amino-acid ABC transporter ATP-binding pr | 100.0 | |
| PRK14256 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14244 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14261 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14243 | 264 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK13641 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14262 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10619 | 257 | histidine/lysine/arginine/ornithine transporter su | 100.0 | |
| PRK10070 | 400 | glycine betaine transporter ATP-binding subunit; P | 100.0 | |
| TIGR03411 | 242 | urea_trans_UrtD urea ABC transporter, ATP-binding | 100.0 | |
| PRK13649 | 280 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03268 | 208 | ABC_BcrA_bacitracin_resist The BcrA subfamily repr | 100.0 | |
| PRK14270 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03265 | 220 | ABC_DrrA DrrA is the ATP-binding protein component | 100.0 | |
| PRK13652 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03290 | 218 | ABCC_SUR1_N The SUR domain 1. The sulfonylurea rec | 100.0 | |
| PRK10895 | 241 | lipopolysaccharide ABC transporter ATP-binding pro | 100.0 | |
| PRK14253 | 249 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR03415 | 382 | ABC_choXWV_ATP choline ABC transporter, ATP-bindin | 100.0 | |
| PRK14271 | 276 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11231 | 255 | fecE iron-dicitrate transporter ATP-binding subuni | 100.0 | |
| cd03293 | 220 | ABC_NrtD_SsuB_transporters NrtD and SsuB are the A | 100.0 | |
| PRK11247 | 257 | ssuB aliphatic sulfonates transport ATP-binding su | 100.0 | |
| PRK11308 | 327 | dppF dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| TIGR01288 | 303 | nodI ATP-binding ABC transporter family nodulation | 100.0 | |
| PRK14266 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03246 | 173 | ABCC_Protease_Secretion This family represents the | 100.0 | |
| cd03301 | 213 | ABC_MalK_N The N-terminal ATPase domain of the mal | 100.0 | |
| PRK11300 | 255 | livG leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| PRK14252 | 265 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03257 | 228 | ABC_NikE_OppD_transporters The ABC transporter sub | 100.0 | |
| PRK10247 | 225 | putative ABC transporter ATP-binding protein YbbL; | 100.0 | |
| PRK11124 | 242 | artP arginine transporter ATP-binding subunit; Pro | 100.0 | |
| PRK14254 | 285 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14260 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR02673 | 214 | FtsE cell division ATP-binding protein FtsE. This | 100.0 | |
| PRK13638 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13536 | 340 | nodulation factor exporter subunit NodI; Provision | 100.0 | |
| PRK09473 | 330 | oppD oligopeptide transporter ATP-binding componen | 100.0 | |
| PRK11022 | 326 | dppD dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| cd03225 | 211 | ABC_cobalt_CbiO_domain1 Domain I of the ABC compon | 100.0 | |
| PRK14272 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14275 | 286 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13548 | 258 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| PRK13639 | 275 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR03522 | 301 | GldA_ABC_ATP gliding motility-associated ABC trans | 100.0 | |
| PRK10253 | 265 | iron-enterobactin transporter ATP-binding protein; | 100.0 | |
| cd03300 | 232 | ABC_PotA_N PotA is an ABC-type transporter and the | 100.0 | |
| PRK14263 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG4175 | 386 | ProV ABC-type proline/glycine betaine transport sy | 100.0 | |
| TIGR03873 | 256 | F420-0_ABC_ATP proposed F420-0 ABC transporter, AT | 100.0 | |
| TIGR00968 | 237 | 3a0106s01 sulfate ABC transporter, ATP-binding pro | 100.0 | |
| PRK14265 | 274 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14241 | 258 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| cd03292 | 214 | ABC_FtsE_transporter FtsE is a hydrophilic nucleot | 100.0 | |
| PRK14264 | 305 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03235 | 213 | ABC_Metallic_Cations ABC component of the metal-ty | 100.0 | |
| PRK11701 | 258 | phnK phosphonate C-P lyase system protein PhnK; Pr | 100.0 | |
| cd03298 | 211 | ABC_ThiQ_thiamine_transporter ABC-type thiamine tr | 100.0 | |
| PRK14258 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13547 | 272 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| PRK14255 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10771 | 232 | thiQ thiamine transporter ATP-binding subunit; Pro | 100.0 | |
| PRK10908 | 222 | cell division protein FtsE; Provisional | 100.0 | |
| cd03269 | 210 | ABC_putative_ATPase This subfamily is involved in | 100.0 | |
| PRK10584 | 228 | putative ABC transporter ATP-binding protein YbbA; | 100.0 | |
| PRK14246 | 257 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03262 | 213 | ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP- | 100.0 | |
| COG1137 | 243 | YhbG ABC-type (unclassified) transport system, ATP | 100.0 | |
| PRK11144 | 352 | modC molybdate transporter ATP-binding protein; Pr | 100.0 | |
| PRK15093 | 330 | antimicrobial peptide ABC transporter ATP-binding | 100.0 | |
| cd03234 | 226 | ABCG_White The White subfamily represents ABC tran | 100.0 | |
| PRK15112 | 267 | antimicrobial peptide ABC system ATP-binding prote | 100.0 | |
| COG4619 | 223 | ABC-type uncharacterized transport system, ATPase | 100.0 | |
| cd03299 | 235 | ABC_ModC_like Archeal protein closely related to M | 100.0 | |
| PRK09984 | 262 | phosphonate/organophosphate ester transporter subu | 100.0 | |
| TIGR01978 | 243 | sufC FeS assembly ATPase SufC. SufC is part of the | 100.0 | |
| COG4555 | 245 | NatA ABC-type Na+ transport system, ATPase compone | 100.0 | |
| TIGR01277 | 213 | thiQ thiamine ABC transporter, ATP-binding protein | 100.0 | |
| TIGR01188 | 302 | drrA daunorubicin resistance ABC transporter ATP-b | 100.0 | |
| COG1131 | 293 | CcmA ABC-type multidrug transport system, ATPase c | 100.0 | |
| PRK10419 | 268 | nikE nickel transporter ATP-binding protein NikE; | 100.0 | |
| PRK11248 | 255 | tauB taurine transporter ATP-binding subunit; Prov | 100.0 | |
| TIGR02142 | 354 | modC_ABC molybdenum ABC transporter, ATP-binding p | 100.0 | |
| cd03233 | 202 | ABC_PDR_domain1 The pleiotropic drug resistance (P | 100.0 | |
| cd03228 | 171 | ABCC_MRP_Like The MRP (Mutidrug Resistance Protein | 100.0 | |
| TIGR02982 | 220 | heterocyst_DevA ABC exporter ATP-binding subunit, | 100.0 | |
| cd03230 | 173 | ABC_DR_subfamily_A This family of ATP-binding prot | 100.0 | |
| TIGR02323 | 253 | CP_lyasePhnK phosphonate C-P lyase system protein | 100.0 | |
| PRK10418 | 254 | nikD nickel transporter ATP-binding protein NikD; | 100.0 | |
| cd03229 | 178 | ABC_Class3 This class is comprised of all BPD (Bin | 100.0 | |
| cd03297 | 214 | ABC_ModC_molybdenum_transporter ModC is an ABC-typ | 100.0 | |
| cd03223 | 166 | ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass | 100.0 | |
| cd03213 | 194 | ABCG_EPDR ABCG transporters are involved in eye pi | 100.0 | |
| COG1123 | 539 | ATPase components of various ABC-type transport sy | 100.0 | |
| TIGR03740 | 223 | galliderm_ABC gallidermin-class lantibiotic protec | 100.0 | |
| COG0444 | 316 | DppD ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| cd03215 | 182 | ABC_Carb_Monos_II This family represents domain II | 100.0 | |
| COG0411 | 250 | LivG ABC-type branched-chain amino acid transport | 100.0 | |
| cd03232 | 192 | ABC_PDR_domain2 The pleiotropic drug resistance-li | 100.0 | |
| cd03217 | 200 | ABC_FeS_Assembly ABC-type transport system involve | 100.0 | |
| TIGR03608 | 206 | L_ocin_972_ABC putative bacteriocin export ABC tra | 100.0 | |
| PRK15056 | 272 | manganese/iron transporter ATP-binding protein; Pr | 100.0 | |
| CHL00131 | 252 | ycf16 sulfate ABC transporter protein; Validated | 100.0 | |
| PRK09580 | 248 | sufC cysteine desulfurase ATPase component; Review | 100.0 | |
| PRK03695 | 248 | vitamin B12-transporter ATPase; Provisional | 100.0 | |
| TIGR02770 | 230 | nickel_nikD nickel import ATP-binding protein NikD | 100.0 | |
| COG4181 | 228 | Predicted ABC-type transport system involved in ly | 100.0 | |
| COG4598 | 256 | HisP ABC-type histidine transport system, ATPase c | 100.0 | |
| cd03214 | 180 | ABC_Iron-Siderophores_B12_Hemin ABC transporters, | 100.0 | |
| PRK09544 | 251 | znuC high-affinity zinc transporter ATPase; Review | 100.0 | |
| COG4559 | 259 | ABC-type hemin transport system, ATPase component | 100.0 | |
| cd03231 | 201 | ABC_CcmA_heme_exporter CcmA, the ATP-binding compo | 100.0 | |
| TIGR01184 | 230 | ntrCD nitrate transport ATP-binding subunits C and | 100.0 | |
| cd03216 | 163 | ABC_Carb_Monos_I This family represents the domain | 100.0 | |
| PRK10261 | 623 | glutathione transporter ATP-binding protein; Provi | 100.0 | |
| cd03267 | 236 | ABC_NatA_like Similar in sequence to NatA, this is | 100.0 | |
| COG4172 | 534 | ABC-type uncharacterized transport system, duplica | 100.0 | |
| PRK13540 | 200 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| COG4525 | 259 | TauB ABC-type taurine transport system, ATPase com | 100.0 | |
| PRK13538 | 204 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| KOG0060 | 659 | consensus Long-chain acyl-CoA transporter, ABC sup | 100.0 | |
| PRK15134 | 529 | microcin C ABC transporter ATP-binding protein Yej | 100.0 | |
| COG4608 | 268 | AppF ABC-type oligopeptide transport system, ATPas | 100.0 | |
| PRK13543 | 214 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| TIGR01189 | 198 | ccmA heme ABC exporter, ATP-binding protein CcmA. | 100.0 | |
| COG4604 | 252 | CeuD ABC-type enterochelin transport system, ATPas | 100.0 | |
| PRK13539 | 207 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| TIGR00955 | 617 | 3a01204 The Eye Pigment Precursor Transporter (EPP | 100.0 | |
| PRK13546 | 264 | teichoic acids export protein ATP-binding subunit; | 100.0 | |
| COG4161 | 242 | ArtP ABC-type arginine transport system, ATPase co | 100.0 | |
| PLN03211 | 659 | ABC transporter G-25; Provisional | 100.0 | |
| PRK13545 | 549 | tagH teichoic acids export protein ATP-binding sub | 100.0 | |
| TIGR02324 | 224 | CP_lyasePhnL phosphonate C-P lyase system protein | 100.0 | |
| COG4148 | 352 | ModC ABC-type molybdate transport system, ATPase c | 100.0 | |
| TIGR03269 | 520 | met_CoM_red_A2 methyl coenzyme M reductase system, | 100.0 | |
| PRK13549 | 506 | xylose transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK10535 | 648 | macrolide transporter ATP-binding /permease protei | 100.0 | |
| TIGR03771 | 223 | anch_rpt_ABC anchored repeat-type ABC transporter, | 100.0 | |
| cd03220 | 224 | ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transpo | 100.0 | |
| TIGR01166 | 190 | cbiO cobalt transport protein ATP-binding subunit. | 100.0 | |
| PRK13541 | 195 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| TIGR01257 | 2272 | rim_protein retinal-specific rim ABC transporter. | 100.0 | |
| TIGR02633 | 500 | xylG D-xylose ABC transporter, ATP-binding protein | 100.0 | |
| PRK09700 | 510 | D-allose transporter ATP-binding protein; Provisio | 100.0 | |
| TIGR01187 | 325 | potA spermidine/putrescine ABC transporter ATP-bin | 100.0 | |
| PRK10762 | 501 | D-ribose transporter ATP binding protein; Provisio | 100.0 | |
| cd03237 | 246 | ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 o | 100.0 | |
| TIGR00956 | 1394 | 3a01205 Pleiotropic Drug Resistance (PDR) Family p | 100.0 | |
| PRK11288 | 501 | araG L-arabinose transporter ATP-binding protein; | 100.0 | |
| COG4615 | 546 | PvdE ABC-type siderophore export system, fused ATP | 100.0 | |
| cd03221 | 144 | ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is | 100.0 | |
| PRK15064 | 530 | ABC transporter ATP-binding protein; Provisional | 100.0 | |
| cd03236 | 255 | ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 o | 100.0 | |
| PRK15439 | 510 | autoinducer 2 ABC transporter ATP-binding protein | 100.0 | |
| COG1101 | 263 | PhnK ABC-type uncharacterized transport system, AT | 100.0 | |
| PRK15177 | 213 | Vi polysaccharide export ATP-binding protein VexC; | 100.0 | |
| COG4167 | 267 | SapF ABC-type antimicrobial peptide transport syst | 99.98 | |
| PRK10982 | 491 | galactose/methyl galaxtoside transporter ATP-bindi | 99.98 | |
| PRK10938 | 490 | putative molybdenum transport ATP-binding protein | 99.98 | |
| COG4152 | 300 | ABC-type uncharacterized transport system, ATPase | 99.97 | |
| PLN03073 | 718 | ABC transporter F family; Provisional | 99.97 | |
| COG4136 | 213 | ABC-type uncharacterized transport system, ATPase | 99.97 | |
| cd03222 | 177 | ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi | 99.97 | |
| cd00267 | 157 | ABC_ATPase ABC (ATP-binding cassette) transporter | 99.97 | |
| PRK10636 | 638 | putative ABC transporter ATP-binding protein; Prov | 99.97 | |
| PRK11819 | 556 | putative ABC transporter ATP-binding protein; Revi | 99.97 | |
| TIGR03719 | 552 | ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa | 99.97 | |
| KOG0927 | 614 | consensus Predicted transporter (ABC superfamily) | 99.97 | |
| COG1119 | 257 | ModF ABC-type molybdenum transport system, ATPase | 99.97 | |
| PRK11147 | 635 | ABC transporter ATPase component; Reviewed | 99.97 | |
| cd03238 | 176 | ABC_UvrA The excision repair protein UvrA; Nucleot | 99.97 | |
| PLN03140 | 1470 | ABC transporter G family member; Provisional | 99.97 | |
| PRK13409 | 590 | putative ATPase RIL; Provisional | 99.97 | |
| COG4674 | 249 | Uncharacterized ABC-type transport system, ATPase | 99.97 | |
| KOG0065 | 1391 | consensus Pleiotropic drug resistance proteins (PD | 99.97 | |
| COG0396 | 251 | sufC Cysteine desulfurase activator ATPase [Posttr | 99.97 | |
| COG1134 | 249 | TagH ABC-type polysaccharide/polyol phosphate tran | 99.97 | |
| KOG0064 | 728 | consensus Peroxisomal long-chain acyl-CoA transpor | 99.96 | |
| COG4586 | 325 | ABC-type uncharacterized transport system, ATPase | 99.96 | |
| COG4107 | 258 | PhnK ABC-type phosphonate transport system, ATPase | 99.96 | |
| KOG0061 | 613 | consensus Transporter, ABC superfamily (Breast can | 99.96 | |
| PF00005 | 137 | ABC_tran: ABC transporter This structure is on hol | 99.96 | |
| COG0488 | 530 | Uup ATPase components of ABC transporters with dup | 99.95 | |
| COG4178 | 604 | ABC-type uncharacterized transport system, permeas | 99.95 | |
| COG4133 | 209 | CcmA ABC-type transport system involved in cytochr | 99.94 | |
| cd03270 | 226 | ABC_UvrA_I The excision repair protein UvrA domain | 99.94 | |
| cd03271 | 261 | ABC_UvrA_II The excision repair protein UvrA domai | 99.94 | |
| PRK00635 | 1809 | excinuclease ABC subunit A; Provisional | 99.94 | |
| cd03278 | 197 | ABC_SMC_barmotin Barmotin is a tight junction-asso | 99.94 | |
| cd03289 | 275 | ABCC_CFTR2 The CFTR subfamily domain 2. The cystic | 99.93 | |
| KOG0062 | 582 | consensus ATPase component of ABC transporters wit | 99.93 | |
| COG4778 | 235 | PhnL ABC-type phosphonate transport system, ATPase | 99.92 | |
| KOG0059 | 885 | consensus Lipid exporter ABCA1 and related protein | 99.92 | |
| cd03279 | 213 | ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complex | 99.91 | |
| PF00664 | 275 | ABC_membrane: ABC transporter transmembrane region | 99.91 | |
| cd03272 | 243 | ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC protein | 99.91 | |
| COG4138 | 248 | BtuD ABC-type cobalamin transport system, ATPase c | 99.9 | |
| KOG0927 | 614 | consensus Predicted transporter (ABC superfamily) | 99.9 | |
| COG1129 | 500 | MglA ABC-type sugar transport system, ATPase compo | 99.9 | |
| cd03240 | 204 | ABC_Rad50 The catalytic domains of Rad50 are simil | 99.9 | |
| COG2884 | 223 | FtsE Predicted ATPase involved in cell division [C | 99.9 | |
| PRK00349 | 943 | uvrA excinuclease ABC subunit A; Reviewed | 99.89 | |
| cd03273 | 251 | ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC protein | 99.88 | |
| COG1117 | 253 | PstB ABC-type phosphate transport system, ATPase c | 99.88 | |
| PRK14257 | 329 | phosphate ABC transporter ATP-binding protein; Pro | 99.88 | |
| COG1125 | 309 | OpuBA ABC-type proline/glycine betaine transport s | 99.88 | |
| KOG0065 | 1391 | consensus Pleiotropic drug resistance proteins (PD | 99.88 | |
| cd03244 | 221 | ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. | 99.88 | |
| cd03274 | 212 | ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC protein | 99.88 | |
| cd03288 | 257 | ABCC_SUR2 The SUR domain 2. The sulfonylurea recep | 99.87 | |
| COG1126 | 240 | GlnQ ABC-type polar amino acid transport system, A | 99.87 | |
| cd03248 | 226 | ABCC_TAP TAP, the Transporter Associated with Anti | 99.87 | |
| cd03254 | 229 | ABCC_Glucan_exporter_like Glucan exporter ATP-bind | 99.86 | |
| TIGR00630 | 924 | uvra excinuclease ABC, A subunit. This family is b | 99.86 | |
| cd03252 | 237 | ABCC_Hemolysin The ABC-transporter hemolysin B is | 99.86 | |
| KOG0066 | 807 | consensus eIF2-interacting protein ABC50 (ABC supe | 99.86 | |
| PF00664 | 275 | ABC_membrane: ABC transporter transmembrane region | 99.86 | |
| cd03275 | 247 | ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC protein | 99.86 | |
| COG3845 | 501 | ABC-type uncharacterized transport systems, ATPase | 99.86 | |
| cd03249 | 238 | ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) | 99.85 | |
| COG3839 | 338 | MalK ABC-type sugar transport systems, ATPase comp | 99.85 | |
| cd03245 | 220 | ABCC_bacteriocin_exporters ABC-type bacteriocin ex | 99.85 | |
| cd03253 | 236 | ABCC_ATM1_transporter ATM1 is an ABC transporter t | 99.85 | |
| cd03251 | 234 | ABCC_MsbA MsbA is an essential ABC transporter, cl | 99.85 | |
| KOG0066 | 807 | consensus eIF2-interacting protein ABC50 (ABC supe | 99.85 | |
| COG3842 | 352 | PotA ABC-type spermidine/putrescine transport syst | 99.85 | |
| COG1135 | 339 | AbcC ABC-type metal ion transport system, ATPase c | 99.84 | |
| cd03250 | 204 | ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. | 99.84 | |
| KOG0062 | 582 | consensus ATPase component of ABC transporters wit | 99.84 | |
| cd03369 | 207 | ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-ty | 99.84 | |
| KOG0060 | 659 | consensus Long-chain acyl-CoA transporter, ABC sup | 99.84 | |
| PRK13650 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.84 | |
| COG3638 | 258 | ABC-type phosphate/phosphonate transport system, A | 99.84 | |
| COG1120 | 258 | FepC ABC-type cobalamin/Fe3+-siderophores transpor | 99.84 | |
| COG1122 | 235 | CbiO ABC-type cobalt transport system, ATPase comp | 99.84 | |
| TIGR00960 | 216 | 3a0501s02 Type II (General) Secretory Pathway (IIS | 99.84 | |
| COG4170 | 330 | SapD ABC-type antimicrobial peptide transport syst | 99.83 | |
| TIGR02314 | 343 | ABC_MetN D-methionine ABC transporter, ATP-binding | 99.83 | |
| COG3840 | 231 | ThiQ ABC-type thiamine transport system, ATPase co | 99.83 | |
| PRK13647 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.83 | |
| COG1127 | 263 | Ttg2A ABC-type transport system involved in resist | 99.82 | |
| COG1245 | 591 | Predicted ATPase, RNase L inhibitor (RLI) homolog | 99.82 | |
| cd03290 | 218 | ABCC_SUR1_N The SUR domain 1. The sulfonylurea rec | 99.82 | |
| COG1116 | 248 | TauB ABC-type nitrate/sulfonate/bicarbonate transp | 99.82 | |
| PRK13631 | 320 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.82 | |
| cd03276 | 198 | ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC protein | 99.82 | |
| PRK14269 | 246 | phosphate ABC transporter ATP-binding protein; Pro | 99.82 | |
| cd03261 | 235 | ABC_Org_Solvent_Resistant ABC (ATP-binding cassett | 99.82 | |
| PRK11629 | 233 | lolD lipoprotein transporter ATP-binding subunit; | 99.82 | |
| PRK13635 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.82 | |
| cd03260 | 227 | ABC_PstB_phosphate_transporter Phosphate uptake is | 99.82 | |
| cd03266 | 218 | ABC_NatA_sodium_exporter NatA is the ATPase compon | 99.82 | |
| PRK14250 | 241 | phosphate ABC transporter ATP-binding protein; Pro | 99.82 | |
| TIGR02673 | 214 | FtsE cell division ATP-binding protein FtsE. This | 99.82 | |
| PRK13632 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.81 | |
| cd03226 | 205 | ABC_cobalt_CbiO_domain2 Domain II of the ABC compo | 99.81 | |
| PRK13642 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.81 | |
| PRK13646 | 286 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.81 | |
| cd03255 | 218 | ABC_MJ0796_Lo1CDE_FtsE This family is comprised of | 99.81 | |
| PRK13643 | 288 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.81 | |
| PRK13637 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.81 | |
| cd03292 | 214 | ABC_FtsE_transporter FtsE is a hydrophilic nucleot | 99.81 | |
| cd03264 | 211 | ABC_drug_resistance_like ABC-type multidrug transp | 99.81 | |
| cd03263 | 220 | ABC_subfamily_A The ABCA subfamily mediates the tr | 99.81 | |
| PRK10575 | 265 | iron-hydroxamate transporter ATP-binding subunit; | 99.81 | |
| cd03268 | 208 | ABC_BcrA_bacitracin_resist The BcrA subfamily repr | 99.81 | |
| PRK10908 | 222 | cell division protein FtsE; Provisional | 99.81 | |
| cd03258 | 233 | ABC_MetN_methionine_transporter MetN (also known a | 99.81 | |
| cd03225 | 211 | ABC_cobalt_CbiO_domain1 Domain I of the ABC compon | 99.81 | |
| COG1136 | 226 | SalX ABC-type antimicrobial peptide transport syst | 99.81 | |
| PRK13640 | 282 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.81 | |
| PRK13652 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.81 | |
| PRK13540 | 200 | cytochrome c biogenesis protein CcmA; Provisional | 99.8 | |
| cd03256 | 241 | ABC_PhnC_transporter ABC-type phosphate/phosphonat | 99.8 | |
| PRK10247 | 225 | putative ABC transporter ATP-binding protein YbbL; | 99.8 | |
| TIGR02315 | 243 | ABC_phnC phosphonate ABC transporter, ATP-binding | 99.8 | |
| cd03259 | 213 | ABC_Carb_Solutes_like ABC Carbohydrate and Solute | 99.8 | |
| PRK10584 | 228 | putative ABC transporter ATP-binding protein YbbA; | 99.8 | |
| cd03231 | 201 | ABC_CcmA_heme_exporter CcmA, the ATP-binding compo | 99.8 | |
| PRK11432 | 351 | fbpC ferric transporter ATP-binding subunit; Provi | 99.8 | |
| TIGR02211 | 221 | LolD_lipo_ex lipoprotein releasing system, ATP-bin | 99.8 | |
| PRK11153 | 343 | metN DL-methionine transporter ATP-binding subunit | 99.8 |
| >KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-178 Score=1616.02 Aligned_cols=1109 Identities=56% Similarity=0.916 Sum_probs=1008.2
Q ss_pred cchHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 000984 43 SVPFYKLFTFADSADTALMIIGSIGAIGNGLCLPLMTLLFGDLINTFGDNQNNSETVDKVSKVAVKFVYLGIGSGIASFL 122 (1198)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 122 (1198)
..+++++|+|..++++.+++++++++++.++.+|++.+++|++.+.+....+. ...+....++++++++|++.+++.|+
T Consensus 12 ~~~~~~lf~~a~~~D~~Lm~~G~i~a~~~G~~~P~~~ii~g~~~~~~~~~~~~-~~~~~~~~~~l~~~~lg~~~~~~~~~ 90 (1228)
T KOG0055|consen 12 TVSFFKLFRFADRFDYLLMILGSIGAIAHGLGLPLMSIIFGKLTDVLGDNTNK-IASSEVSKVALYFVYLGVGVFISGFI 90 (1228)
T ss_pred ccchHHheeccchhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHhccch-hhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67799999999999999999999999999999999999999999988654432 22345667888899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhccCCcchHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000984 123 QVTCWMITGERQATRIRGLYLKTILRQDVAFFDNETNTGEVVGRMSGDTVLIQDAMGEKVGKFLQLMATFLGGFLIAFIK 202 (1198)
Q Consensus 123 ~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~f~~~~~~G~i~~r~s~D~~~i~~~~~~~~~~~~~~~~~~i~~~i~~~~~ 202 (1198)
+..||++.+.|...++|..++++++|++++|||.. .+|++.+++++|++.|++.+++.+..+++.+.+++++++++|+.
T Consensus 91 q~~c~~~~geRq~~riR~~yl~~iLrQdi~~fD~~-~~g~~~~~l~~d~~~I~d~~geKvg~~i~~~~~fi~g~ii~F~~ 169 (1228)
T KOG0055|consen 91 QVSCWMRTGERQTARIRSKYLKAILRQDIGWFDTN-STGELVTRLSDDIELIQDAIGEKVGNFIQLLATFIAGFVIGFYY 169 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCccceeecc-cccceEEEecCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999985 67999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcHHHHHHHHHHHHHHHHHHHHH
Q 000984 203 GWLLTLVMLSSIPLLAMSGGVMAIMISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYKSGVQ 282 (1198)
Q Consensus 203 ~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~ 282 (1198)
+|+++++++.+.|++.+....+.+.+.+...+.++.++++.+...|++.++|||.+|+.|+...++|.+.++...+...+
T Consensus 170 ~W~Ltlv~l~~~Pli~~~g~~~a~~~~~~t~ke~~~ya~Ag~iaEe~i~~iRTV~af~gq~~e~~ry~~~L~~~~k~gi~ 249 (1228)
T KOG0055|consen 170 GWKLTLVMLSFIPLIAIAGGLLARFLSKLTEKEQEAYAKAGSIAEEVISSIRTVYAFNGEKKEIERYSKALENALKFGIK 249 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 000984 283 EGLAAGIGLGMVMLIVFCSYALSVWYGGKLILEEGYNGGQVVNVMVAVLTGSMSLGEASPCLSAFGAGQAAAFKMFETIN 362 (1198)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~ 362 (1198)
..++.++..++..++.++.+++.+|+|+.++..+..++|.++++++.++.....+++..|++..+..+..++.++++.++
T Consensus 250 ~g~~~G~~~G~~~~~~~~~~a~~~WyG~~li~~~~~~~g~v~~v~~~vl~g~~sLgqa~p~l~~f~~a~~aa~~I~~~i~ 329 (1228)
T KOG0055|consen 250 KGLFKGLGLGFTFFLLFASYALAFWYGSTLILNGGYNGGDVITVFFSVLIGGMSLGQASPHLSAFAKARAAAYRIFETID 329 (1228)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeehhhhhhhhhccccchHHHhccccchHHHHHHhc
Confidence 99999999999999999999999999999999999999999999988999999999999999999999999999999999
Q ss_pred cCCCCCccCCCCcccCCCcccEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCe
Q 000984 363 RKPEIDAYDTKGKILDDIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGE 442 (1198)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~g~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~ 442 (1198)
..|+.++....+......+|.|+|+||+|+||++++.++|+|+||+|++|+++||||||||||||++++|.|+|+|++|+
T Consensus 330 ~~~~i~~~~~~~~~~~~~~g~ief~nV~FsYPsRpdv~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~RfydP~~G~ 409 (1228)
T KOG0055|consen 330 RKPSIDPYSKGGRVLSSIKGEIEFRNVCFSYPSRPDVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYDPTSGE 409 (1228)
T ss_pred CCCCCCcccccCCcccccccceEEEEEEecCCCCCcchhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCce
Confidence 98887665433334455689999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEECCeecCCcCHHHHhcceEEEcCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCC
Q 000984 443 VLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQ 522 (1198)
Q Consensus 443 i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~ 522 (1198)
|.+||.|+++++.+|+|++||.|.|+|.||++||+|||.||.|+++.+++.++|++++++++|..+|+|++|.+||+|.+
T Consensus 410 V~idG~di~~~~~~~lr~~iglV~QePvlF~~tI~eNI~~G~~dat~~~i~~a~k~ana~~fi~~lp~g~~T~vge~g~q 489 (1228)
T KOG0055|consen 410 VLIDGEDIRNLNLKWLRSQIGLVSQEPVLFATTIRENIRYGKPDATREEIEEAAKAANAHDFILKLPDGYDTLVGERGVQ 489 (1228)
T ss_pred EEEcCccchhcchHHHHhhcCeeeechhhhcccHHHHHhcCCCcccHHHHHHHHHHccHHHHHHhhHHhhcccccCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHhHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhCCCeEEEEecCcchhhccCEEEEEeCCEEEEec
Q 000984 523 LSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKG 602 (1198)
Q Consensus 523 lSgGqkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g 602 (1198)
|||||||||||||||+++|+||||||||||||+++++.+|++|++..++||+|+||||++++++||+|+||++|+|+|.|
T Consensus 490 LSGGQKQRIAIARalv~~P~ILLLDEaTSaLD~~se~~Vq~ALd~~~~grTTivVaHRLStIrnaD~I~v~~~G~IvE~G 569 (1228)
T KOG0055|consen 490 LSGGQKQRIAIARALVRNPKILLLDEATSALDAESERVVQEALDKASKGRTTIVVAHRLSTIRNADKIAVMEEGKIVEQG 569 (1228)
T ss_pred CChHHHHHHHHHHHHHhCCCEEEecCcccccCHHHHHHHHHHHHHhhcCCeEEEEeeehhhhhccCEEEEEECCEEEEec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhhHhcCCCchhHHHHHHHhhccccccccccccccchhhhhhhcccccccccccccCCCCCCCCCCcccccccCCCCCC
Q 000984 603 THSKLVEDPEGAYSQLIRLQEANKESEQTIDGQRKSEISMESLRHSSHRMSLRRSISRGSSIGNSSRHSISVSFGLPSGQ 682 (1198)
Q Consensus 603 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 682 (1198)
+|+||++.+ |.|.++++.|+.....++...+.+ . .+....+. .... ...+ .. +.. .. ...
T Consensus 570 ~h~ELi~~~-G~Y~~lv~~Q~~~~~~~~~~~~~~--~--~~~~~~s~---~~s~--~~~~---~~-~~~-~~-~~~---- 629 (1228)
T KOG0055|consen 570 THDELIALG-GIYSSLVRLQELEKAAEDEEEEES--L--KEERSRSL---KSSS--SSPS---LS-RGS-NR-SNL---- 629 (1228)
T ss_pred CHHHHHhcc-chHHHHHHHHhhhhhhhccccccc--h--hhhhhhcc---cccc--cccc---cc-CCc-cc-ccc----
Confidence 999999985 999999999876554321000000 0 00000000 0000 0000 00 000 00 000
Q ss_pred CCcccCCCCCCCCCCCcccCCcchhHhhhhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCc-hhhhhhH
Q 000984 683 FADTALGEPAGPSQPTEEVAPEVPTRRLAYLNKPEIPVILAGTIAAMANGVILPIYGLLISSVIETFFKPPH-ELKKDSR 761 (1198)
Q Consensus 683 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 761 (1198)
.....+++.. ..+..+......+++++++.+|+|++++++.+++++.++..|++.+++++++..+..+++ .......
T Consensus 630 ~~~~~~~e~~--~~~~~~~~~~~s~~~i~k~~~pe~~~l~lG~i~a~i~G~~~P~fa~~~s~~~~~f~~~~~~~~~~~~~ 707 (1228)
T KOG0055|consen 630 LSVKPEGEDP--EEPVSEEDEKVSFWRIFKLNKPEWPYLLLGSLGAAIRGATYPLFAYVFSQVLEAFYPPDDDELKREVR 707 (1228)
T ss_pred cccccccccc--ccccccccccccHHHHHHhccchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCChHHHHHHHH
Confidence 0000000000 000011114567889999999999999999999999999999999999999999875433 2333344
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccccccCCCChhhHHHHHHhhHHHHHHHHHHHH
Q 000984 762 FWALIYLALGAGSFLLSPAQSYFFAVAGNKLIQRIRSMCFEKVIHMEVSWFDEPEHSSGAIGARLSADAASVRALVGDAL 841 (1198)
Q Consensus 762 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~~l~~~ll~~p~~fFd~~~~~~G~i~~r~s~D~~~i~~~l~~~l 841 (1198)
.|.++|++++++..++.+++.+++..+++++..++|.++|+++++++++|||+++|+ |.|.+|+.+|...++..+.+.+
T Consensus 708 ~~al~f~~l~~~~~i~~~~q~~~f~~~ge~Lt~R~R~~~F~~ll~qd~~wFD~~~ns-g~l~~RLa~Da~~vr~~v~~rl 786 (1228)
T KOG0055|consen 708 AWALIFLGLGIVSGITNFLQHYFFGIAGEKLTKRLRSMMFRALLRQEVGWFDDPENS-GALSSRLATDASNVRAAVGDRL 786 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCCccc-hHHHHHHhcchHHHHHHHHHHH
Confidence 599999999999999999999999999999999999999999999999999999888 9999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhchhHHHHHhcch
Q 000984 842 ARIVQNISTAAAGLIIAFTASWQLALIILVMLPLIGVSGYTQMKFMKGFSADAKMKYEEASQVANDAVGSIRTVASFCAE 921 (1198)
Q Consensus 842 ~~~i~~~~~~i~~li~~~~~~~~l~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIraf~~e 921 (1198)
..+++++..+++++++.++++|+|+++++++.|++++..+.+.+++....++.++...+++....|++++++||++|++|
T Consensus 787 ~~vv~~~~~~~~~iiiaf~~~W~lalv~la~~Pll~~~~~~~~~~~~~~~~~~~~~~~ea~~iA~eai~NIrTV~al~~e 866 (1228)
T KOG0055|consen 787 SLVVQNIAAVIIGIIIAFIYGWRLALVVLATFPLLILSGYLQKKFLKGFSKDDKKAYEEASKIAIEAVSNIRTVAALCAE 866 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHhhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhHHHHhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHhh
Q 000984 922 EKVMQLYKKKCEAPMKTGIRQGMVSGGGFGASFFLLFAFYAASFYAGARLVEDGKATFSDVFKVFFSLTMTAIGISQSSS 1001 (1198)
Q Consensus 922 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~~t~g~l~~~~~~~~~~~~~l~~~~~ 1001 (1198)
+++.+.|.+.++...+...+...+.+..+++++.+.++.+++++|+|++++.+|.+++.+++.++..+.+....+++...
T Consensus 867 ~~~~~~y~~~l~~p~~~~~~~~~i~gl~f~~sqs~~~~~~A~~f~~G~~Li~~g~~~~~~~~~vf~~l~~ta~~~~~~~s 946 (1228)
T KOG0055|consen 867 EKFMELYKEELEKPRKSSFKRGLISGLGFGFSQSLLFFVYALSFWYGARLISNGEMTFEDVFRVFMALSFTAMALGQASS 946 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCcccCCcccEEEeeeeEECCCCCCccccccceEEeeCCCEEEEEcCCC
Q 000984 1002 FSSDSNKAKSAAASIFAIIDRESKIDPSDESGTILEDVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESG 1081 (1198)
Q Consensus 1002 ~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~~~~~~G~I~f~nVsf~Y~~~~~~~vL~~is~~I~~GekvaIVG~SG 1081 (1198)
+.+++.++..|+.++++++|++|.+++..+.+...+..+|+|+|+||+|+||+||+.+||+|+||+|++||+||||||||
T Consensus 947 ~~Pd~~ka~~Aa~~iF~i~dr~~~i~~~~~~~~~~~~~~G~I~~~~V~F~YPsRP~~~Il~~l~l~i~~GqTvALVG~SG 1026 (1228)
T KOG0055|consen 947 YAPDISKAKIAAGSIFEILDRKPTIDPDSTSGGKLPNVKGDIEFRNVSFAYPTRPDVPVLNNLSLSIRAGQTVALVGPSG 1026 (1228)
T ss_pred hCcHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCccccceeEEEEeeeEeeCCCCCCchhhcCCcEEecCCCEEEEECCCC
Confidence 99999999999999999999999776654334445668999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHhhcceeccccccccccHHHHHhcCCCCCCCHHHHHHHHHHcch
Q 000984 1082 SGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANA 1161 (1198)
Q Consensus 1082 SGKSTL~~lL~R~ydp~~G~I~IDG~dI~~i~l~~LR~~IsiV~Qdp~LF~gTIreNI~~g~~~~~tdeei~~Al~~A~l 1161 (1198)
|||||++.||.|||||++|.|.|||+||+++++++||++|++|.|||.||++||||||.||.. ++|++||.+|||.||+
T Consensus 1027 sGKSTvI~LLeRfYdp~~G~V~IDg~dik~lnl~~LR~~i~lVsQEP~LF~~TIrENI~YG~~-~vs~~eIi~Aak~ANa 1105 (1228)
T KOG0055|consen 1027 SGKSTVISLLERFYDPDAGKVKIDGVDIKDLNLKWLRKQIGLVSQEPVLFNGTIRENIAYGSE-EVSEEEIIEAAKLANA 1105 (1228)
T ss_pred CCHHHHHHHHHHhcCCCCCeEEECCcccccCCHHHHHHhcceeccCchhhcccHHHHHhccCC-CCCHHHHHHHHHHhhh
Confidence 999999999999999999999999999999999999999999999999999999999999943 5999999999999999
Q ss_pred HHHHHhccccccceee
Q 000984 1162 HKFICSLQQVRTSRLL 1177 (1198)
Q Consensus 1162 ~dfI~~LP~g~dt~v~ 1177 (1198)
|+||.+||+||||+|-
T Consensus 1106 H~FI~sLP~GyDT~vG 1121 (1228)
T KOG0055|consen 1106 HNFISSLPQGYDTRVG 1121 (1228)
T ss_pred HHHHhcCcCcccCccC
Confidence 9999999999999984
|
|
| >PTZ00265 multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-143 Score=1416.58 Aligned_cols=1120 Identities=28% Similarity=0.462 Sum_probs=911.7
Q ss_pred ccchHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 000984 42 ESVPFYKLFTFADSADTALMIIGSIGAIGNGLCLPLMTLLFGDLINTFGDNQNNSETVDKVSKVAVKFVYLGIGSGIASF 121 (1198)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 121 (1198)
.++++..+|+|+.+.++.+++++++++++.+++.|+++++++.+++.+... +....+++.+++++++.+++.+
T Consensus 43 ~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~p~~~~i~g~iid~~~~~-------~~~~~~~~~~~~~~i~~~~~~~ 115 (1466)
T PTZ00265 43 QKIPFFLPFKCLPASHRKLLGVSFVCATISGGTLPFFVSVFGVIMKNMNLG-------ENVNDIIFSLVLIGIFQFILSF 115 (1466)
T ss_pred ccccHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-------chHHHHHHHHHHHHHHHHHHHH
Confidence 567899999999999988999999999999999999999999999976321 1122334556677888889999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhccCCcchHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000984 122 LQVTCWMITGERQATRIRGLYLKTILRQDVAFFDNETNTGEVVGRMSGDTVLIQDAMGEKVGKFLQLMATFLGGFLIAFI 201 (1198)
Q Consensus 122 ~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~f~~~~~~G~i~~r~s~D~~~i~~~~~~~~~~~~~~~~~~i~~~i~~~~ 201 (1198)
++.+++.+.+.++..++|..++++++++|++|||.. +.|+++++++.|++.+++.+...+..++..+..++++++++++
T Consensus 116 ~~~~~~~~~~~~~~~~lR~~~~~~ll~~~~~~fd~~-~~~~l~s~l~~d~~~i~~~i~~~~~~~~~~~~~~i~~~i~~~~ 194 (1466)
T PTZ00265 116 ISSFCMDVVTTKILKTLKLEFLKSVFYQDGQFHDNN-PGSKLTSDLDFYLEQVNAGIGTKFITIFTYASAFLGLYIWSLF 194 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHcCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999975 8899999999999999999999999999999999999999999
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcHHHHHHHHHHHHHHHHHHHH
Q 000984 202 KGWLLTLVMLSSIPLLAMSGGVMAIMISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYKSGV 281 (1198)
Q Consensus 202 ~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~ 281 (1198)
++|.+++++++++|+++++..++.+..++..+..++..++..+.+.|+++|+++||+|+.|+.+.++|.+......+...
T Consensus 195 ~sw~Lalv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tVka~~~e~~~~~~f~~~~~~~~~~~~ 274 (1466)
T PTZ00265 195 KNARLTLCITCVFPLIYICGVICNKKVKINKKTSLLYNNNTMSIIEEALVGIRTVVSYCGEKTILKKFNLSEKLYSKYIL 274 (1466)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHhccCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999988888888888888899999999999999999999999999999998888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000984 282 QEGLAAGIGLGMVMLIVFCSYALSVWYGGKLILEE--------GYNGGQVVNVMVAVLTGSMSLGEASPCLSAFGAGQAA 353 (1198)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~--------~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~ 353 (1198)
+.....++..++..++.++.+++.+|+|+.++..+ .++++.++++++..+.....+..+.+.+..+..+..+
T Consensus 275 k~~~~~~~~~~~~~~~~~~~~~l~~~~G~~lv~~g~~~~~~~~~~t~g~v~~~~~~~l~~~~~l~~i~~~~~~~~~a~~a 354 (1466)
T PTZ00265 275 KANFMESLHIGMINGFILASYAFGFWYGTRIIISDLSNQQPNNDFHGGSVISILLGVLISMFMLTIILPNITEYMKSLEA 354 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888777777778888899999999998875 4788888877766666666667777888899999999
Q ss_pred HHHHHHHHccCCCCCccCCCCcccCCCcccEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHh
Q 000984 354 AFKMFETINRKPEIDAYDTKGKILDDIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIE 433 (1198)
Q Consensus 354 ~~r~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~ 433 (1198)
+.|+++.++.+++.++.. .+...+. .+.|+++||+|+||++++.++|+|+||+|++||+++||||||||||||+++|+
T Consensus 355 ~~ri~~ii~~~~~~~~~~-~~~~~~~-~~~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~ 432 (1466)
T PTZ00265 355 TNSLYEIINRKPLVENND-DGKKLKD-IKKIQFKNVRFHYDTRKDVEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIE 432 (1466)
T ss_pred HHHHHHHHcCCCCCCCCC-CCccCCC-CCcEEEEEEEEEcCCCCCCceeccceEEEcCCCEEEEECCCCCCHHHHHHHHH
Confidence 999999998776543211 1111112 24799999999998655557999999999999999999999999999999999
Q ss_pred ccCCCCCCeEEE-CCeecCCcCHHHHhcceEEEcCCCCCCcccHHHHHhcCCC---------------------------
Q 000984 434 RFYDPQAGEVLI-DGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKD--------------------------- 485 (1198)
Q Consensus 434 g~~~~~~G~i~i-~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~Ni~~~~~--------------------------- 485 (1198)
|+|+|++|+|.+ ||+|+++++.+++|++|+||+|+|.||++||+|||.+|..
T Consensus 433 gl~~p~~G~I~i~~g~~i~~~~~~~lr~~Ig~V~Q~~~LF~~TI~eNI~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 512 (1466)
T PTZ00265 433 RLYDPTEGDIIINDSHNLKDINLKWWRSKIGVVSQDPLLFSNSIKNNIKYSLYSLKDLEALSNYYNEDGNDSQENKNKRN 512 (1466)
T ss_pred HhccCCCCeEEEeCCcchhhCCHHHHHHhccEecccccchhccHHHHHHhcCCCccccchhccccccccccccccccccc
Confidence 999999999999 5799999999999999999999999999999999998742
Q ss_pred ------------------------------CCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHH
Q 000984 486 ------------------------------DATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIAR 535 (1198)
Q Consensus 486 ------------------------------~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lAR 535 (1198)
+.++++++++++.+++++++..+|+|++|.+|++|.+|||||||||+|||
T Consensus 513 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~a~~~~~l~~~i~~lp~g~dT~vg~~g~~LSGGQkQRiaIAR 592 (1466)
T PTZ00265 513 SCRAKCAGDLNDMSNTTDSNELIEMRKNYQTIKDSEVVDVSKKVLIHDFVSALPDKYETLVGSNASKLSGGQKQRISIAR 592 (1466)
T ss_pred cccccccchhhhcccccchhhhhhcccccccCCHHHHHHHHHHhCcHHHHHhCccccCceeCCCCCcCCHHHHHHHHHHH
Confidence 24568899999999999999999999999999999999999999999999
Q ss_pred hhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh--CCCeEEEEecCcchhhccCEEEEEeCC-----------------
Q 000984 536 AILKDPRILLLDEATSALDAESEKVVQEALDRIM--VNRTTVIVAHRLSTVRNADMIAVIHRG----------------- 596 (1198)
Q Consensus 536 al~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~--~~~t~i~itH~~~~~~~~d~i~~l~~G----------------- 596 (1198)
|++++|+|||||||||+||+++++.+++.|+++. +++|+|+||||+++++.||+|++|++|
T Consensus 593 All~~P~ILlLDEpTSaLD~~se~~i~~~L~~~~~~~g~TvIiIsHrls~i~~aD~Iivl~~g~~g~~~~~~~~~~~~~~ 672 (1466)
T PTZ00265 593 AIIRNPKILILDEATSSLDNKSEYLVQKTINNLKGNENRITIIIAHRLSTIRYANTIFVLSNRERGSTVDVDIIGEDPTK 672 (1466)
T ss_pred HHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHhhcCCCEEEEEeCCHHHHHhCCEEEEEeCCccccccccccccccccc
Confidence 9999999999999999999999999999999886 479999999999999999999999986
Q ss_pred ------------------------------EEEEecChhhHhcCCCchhHHHHHHHhhccccccccccccccchhhhhhh
Q 000984 597 ------------------------------KIVEKGTHSKLVEDPEGAYSQLIRLQEANKESEQTIDGQRKSEISMESLR 646 (1198)
Q Consensus 597 ------------------------------~i~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 646 (1198)
+|+|+|+|+||++..++.|+.+++.|........................
T Consensus 673 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ive~Gth~~L~~~~~g~y~~l~~~q~~~~~~~~~~~~~~~~~~~~~~~~ 752 (1466)
T PTZ00265 673 DNKENNNKNNKDDNNNNNNNNNNKINNAGSYIIEQGTHDALMKNKNGIYYTMINNQKVSSKKSSNNDNDKDSDMKSSAYK 752 (1466)
T ss_pred cccccccccccccccccccccccccccCCceeEeeCCHHHHHhccCCcHHHHHhhhcccccccccccccccccccccccc
Confidence 59999999999986689999999877543221100000000000000000
Q ss_pred cccccccccccccCCCCCCCCCCcccccccCCCCCCCCcccCCCCCCCCCCCc----ccCCcchhHhhhhhcCChhHHHH
Q 000984 647 HSSHRMSLRRSISRGSSIGNSSRHSISVSFGLPSGQFADTALGEPAGPSQPTE----EVAPEVPTRRLAYLNKPEIPVIL 722 (1198)
Q Consensus 647 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~ 722 (1198)
.................. ..... .... .....................+ ........++++++.+++++.++
T Consensus 753 ~~~~~~~~~~~~~~~~~~-~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 828 (1466)
T PTZ00265 753 DSERGYDPDEMNGNSKHE-NESAS--NKKS-CKMSDENASENNAGGKLPFLRNLFKRKPKAPNNLRIVYREIFSYKKDVT 828 (1466)
T ss_pred cccccccccccccccccc-ccccc--cccc-cccccccccchhccccchhhhhccccccccchhHHHHHHHHHHHHHHHH
Confidence 000000000000000000 00000 0000 0000000000000000000000 00011123334444455666688
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000984 723 AGTIAAMANGVILPIYGLLISSVIETFFKPPHELKKDSRFWALIYLALGAGSFLLSPAQSYFFAVAGNKLIQRIRSMCFE 802 (1198)
Q Consensus 723 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~~l~~ 802 (1198)
++++++++.+++.|+++++++.+++.++.. .........|.+++++++++.+++.+++.++..+++.++..++|.++|+
T Consensus 829 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~l~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~lR~~lf~ 907 (1466)
T PTZ00265 829 IIALSILVAGGLYPVFALLYAKYVSTLFDF-ANLEANSNKYSLYILVIAIAMFISETLKNYYNNVIGEKVEKTMKRRLFE 907 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888899999999999999999977532 1112224456777778888888999999999999999999999999999
Q ss_pred HHHhCcccccccCCCChhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 000984 803 KVIHMEVSWFDEPEHSSGAIGARLSADAASVRALVGDALARIVQNISTAAAGLIIAFTASWQLALIILVMLPLIGVSGYT 882 (1198)
Q Consensus 803 ~ll~~p~~fFd~~~~~~G~i~~r~s~D~~~i~~~l~~~l~~~i~~~~~~i~~li~~~~~~~~l~l~~l~~~pl~~~~~~~ 882 (1198)
+++++|++|||++++++|++++|+++|++.++..+...+..++..++.++++++++++++|.+++++++++|++..+...
T Consensus 908 ~ll~~~~~~fd~~~~~~G~l~srl~~Dv~~l~~~~~~~l~~~~~~i~~~i~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~ 987 (1466)
T PTZ00265 908 NILYQEISFFDQDKHAPGLLSAHINRDVHLLKTGLVNNIVIFTHFIVLFLVSMVMSFYFCPIVAAVLTGTYFIFMRVFAI 987 (1466)
T ss_pred HHHcCCHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999656899999999999999999999999999999999999999999999999988876555444333222
Q ss_pred HHHHHhhhH-H-H-------------HHHHHHHHHHHHHHHhchhHHHHHhcchHHHHHHHHHHhhhHHHHhHHHHHHHh
Q 000984 883 QMKFMKGFS-A-D-------------AKMKYEEASQVANDAVGSIRTVASFCAEEKVMQLYKKKCEAPMKTGIRQGMVSG 947 (1198)
Q Consensus 883 ~~~~~~~~~-~-~-------------~~~~~~~~~~~~~E~l~gi~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 947 (1198)
..+...... + . .++..++.+..++|++.|+++||+|+.|+++.++|.+..+...+...+.....+
T Consensus 988 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tVka~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 1067 (1466)
T PTZ00265 988 RARLTANKDVEKKEINQPGTVFAYNSDDEIFKDPSFLIQEAFYNMNTVIIYGLEDYFCNLIEKAIDYSNKGQKRKTLVNS 1067 (1466)
T ss_pred HHHHHHHHHHHhhhccccccccchhhhHHHHHHHHHHHHHHHhcHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111111000 0 0 123355678899999999999999999999999999999999999998888888
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhcCCCCCC
Q 000984 948 GGFGASFFLLFAFYAASFYAGARLVEDGKATFSDVFKVFFSLTMTAIGISQSSSFSSDSNKAKSAAASIFAIIDRESKID 1027 (1198)
Q Consensus 948 ~~~~~~~~~~~~~~~~~~~~g~~l~~~g~~t~g~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~~ 1027 (1198)
...++...+..+..++++|+|++++..|.+++|++++++.+..+...++..+..+..+++++..+++|++++++.+++.+
T Consensus 1068 ~~~~~~~~~~~~~~~~~~~~G~~lv~~g~it~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~a~~a~~ri~~ll~~~~~~~ 1147 (1466)
T PTZ00265 1068 MLWGFSQSAQLFINSFAYWFGSFLIRRGTILVDDFMKSLFTFLFTGSYAGKLMSLKGDSENAKLSFEKYYPLIIRKSNID 1147 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCcCC
Confidence 89999998888889999999999999999999999998877776667788899999999999999999999999876442
Q ss_pred CCCCCCCc---ccCCcccEEEeeeeEECCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCC-------
Q 000984 1028 PSDESGTI---LEDVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDP------- 1097 (1198)
Q Consensus 1028 ~~~~~~~~---~~~~~G~I~f~nVsf~Y~~~~~~~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp------- 1097 (1198)
..+..... ++...|.|+|+||+|+||++++.+||+|+||+|+|||+|||||+||||||||++||+|||||
T Consensus 1148 ~~~~~~~~~~~~~~~~g~I~f~nVsF~Y~~~~~~~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~ 1227 (1466)
T PTZ00265 1148 VRDNGGIRIKNKNDIKGKIEIMDVNFRYISRPNVPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIV 1227 (1466)
T ss_pred CCCCcccccccCCCCCceEEEEEEEEECCCCCCCccccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHHhCCCccccccc
Confidence 21111111 12346889999999999876666899999999999999999999999999999999999999
Q ss_pred -----------------------------------------------CCCeEEECCcccCCCChHHHHhhcceecccccc
Q 000984 1098 -----------------------------------------------DAGHITLDGVEIQKLQLKWLRQQMGLVSQEPVL 1130 (1198)
Q Consensus 1098 -----------------------------------------------~~G~I~IDG~dI~~i~l~~LR~~IsiV~Qdp~L 1130 (1198)
++|+|+|||+||+++++++||++|++|||||+|
T Consensus 1228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~L 1307 (1466)
T PTZ00265 1228 FKNEHTNDMTNEQDYQGDEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLFSIVSQEPML 1307 (1466)
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccCCCCCeEEECCEEHHhCCHHHHHhhccEeCCCCcc
Confidence 699999999999999999999999999999999
Q ss_pred ccccHHHHHhcCCCCCCCHHHHHHHHHHcchHHHHHhccccccceee
Q 000984 1131 FNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQVRTSRLL 1177 (1198)
Q Consensus 1131 F~gTIreNI~~g~~~~~tdeei~~Al~~A~l~dfI~~LP~g~dt~v~ 1177 (1198)
|+|||||||+||+ +++|||||++||+.|++||||++||+||||.|-
T Consensus 1308 F~gTIreNI~~g~-~~at~eeI~~A~k~A~l~~fI~~LP~GydT~VG 1353 (1466)
T PTZ00265 1308 FNMSIYENIKFGK-EDATREDVKRACKFAAIDEFIESLPNKYDTNVG 1353 (1466)
T ss_pred ccccHHHHHhcCC-CCCCHHHHHHHHHHcCCHHHHHhCccccCCccC
Confidence 9999999999995 479999999999999999999999999999873
|
|
| >KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-145 Score=1360.81 Aligned_cols=995 Identities=22% Similarity=0.268 Sum_probs=766.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCChhhhh---ccCCcchHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000984 127 WMITGERQATRIRGLYLKTILRQDVAFFD---NETNTGEVVGRMSGDTVLIQDAMGEKVGKFLQLMATFLGGFLIAFIKG 203 (1198)
Q Consensus 127 ~~~~~~~~~~~lr~~~~~~ll~~~~~~f~---~~~~~G~i~~r~s~D~~~i~~~~~~~~~~~~~~~~~~i~~~i~~~~~~ 203 (1198)
+.+...+.+.++|..+...++++.+..-. ...+.|+|+|.|++|++++++........|...+..+++...+...++
T Consensus 262 ~~~~~~~~g~r~R~al~~~IY~K~L~ls~~~~~~~t~G~ivNlms~D~~ri~~~~~~~h~~w~~Plqi~~~l~lLy~~LG 341 (1381)
T KOG0054|consen 262 YFFVSFRVGMRLRSALISAIYRKALRLSNSARGETTVGEIVNLMSVDAQRLSDAACFLHLLWSAPLQIILALYLLYGLLG 341 (1381)
T ss_pred HHHHHHhhhhhHHHHHHHHHHHhhhcCchhhccCCCcchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 44566899999999887777776654321 124799999999999999999887666666666665565556666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHH
Q 000984 204 WLLTLVMLSSIPLLAMSGGVMAIMISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYKSGVQE 283 (1198)
Q Consensus 204 ~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~ 283 (1198)
|. +++.++++.+++.+..++.+..++.+.+.++..++|.+.++|.++|||+||+|+||+.|.+++.+.++++.+...+.
T Consensus 342 ~s-a~~G~~~~il~~p~n~~~a~~~~~~q~~~m~~~D~Rik~~nEiL~~IkviK~yaWE~~F~~~I~~~R~~El~~lrk~ 420 (1381)
T KOG0054|consen 342 PS-ALAGVAVMVLLIPLNSFLAKKIAKFQKRLMKRKDERIKLMNEILNGIKVIKLYAWEKPFLKKIEDLRQKELKLLRKS 420 (1381)
T ss_pred hH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhHhhhhHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 64 45555566677778888999999999999999999999999999999999999999999999999999999998888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 000984 284 GLAAGIGLGMVMLIVFCSYALSVWYGGKL-ILEEGYNGGQVVNVMVAVLTGSMSLGEASPCLSAFGAGQAAAFKMFETIN 362 (1198)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~l-~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~ 362 (1198)
.+..++...+..+...++.+ +.++.+. ...+.+++..+|+.+..+.....++..++..+..+.++.++.+|+.+++.
T Consensus 421 ~~~~~~~~~~~~~~p~lv~~--~tF~~~v~~~~~~lt~~~aF~slalfniLr~pl~~~P~~i~~~vqa~VS~~Ri~~fl~ 498 (1381)
T KOG0054|consen 421 AYLSALNSFLNFFSPVLVSV--VTFVVFVLLLGNLLTASTAFTSLALFNILRFPLFMLPSVISQLVQAKVSLKRLKEFLL 498 (1381)
T ss_pred HHHHHHHHHHHHHHHHHHHH--HHHHHHhhccCccccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 88877666554333222221 1222222 33556788788887777766777888877789999999999999999997
Q ss_pred cCCCCCccCCCCcccCCCcccEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCe
Q 000984 363 RKPEIDAYDTKGKILDDIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGE 442 (1198)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~g~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~ 442 (1198)
.++ .++......+..+.+..|+++|.+|+|+....++.|+||||+|++|+++||||++|||||||+++|+|++++.+|+
T Consensus 499 ~~e-~~~~~~~~~~~~~~~~~i~i~~~sfsW~~~~~~~tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~~~sG~ 577 (1381)
T KOG0054|consen 499 SEE-LDPDSVERSPDEAGENAIEIKNGSFSWDSESPEPTLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMPKLSGS 577 (1381)
T ss_pred Ccc-cCccccccCCCCCCCceEEEeeeeEecCCCCCcccccceeEEecCCCEEEEECCCCCCHHHHHHHHhcCcccccce
Confidence 643 3322221112223345699999999997644456999999999999999999999999999999999999999999
Q ss_pred EEECCeecCCcCHHHHhcceEEEcCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCC
Q 000984 443 VLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQ 522 (1198)
Q Consensus 443 i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~ 522 (1198)
+.++| .++||||+||||+|||||||+||.| +++++++++.+.|+|.+|++.||.||.|+|||+|.|
T Consensus 578 v~v~g-------------siaYv~Q~pWI~ngTvreNILFG~~-~d~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGErGin 643 (1381)
T KOG0054|consen 578 VAVNG-------------SVAYVPQQPWIQNGTVRENILFGSP-YDEERYDKVIKACALKKDLEILPFGDLTEIGERGIN 643 (1381)
T ss_pred EEEcC-------------eEEEeccccHhhCCcHHHhhhcCcc-ccHHHHHHHHHHccCHhHHhhcCCCCcceecCCccC
Confidence 99999 7999999999999999999999987 789999999999999999999999999999999999
Q ss_pred CChHHHHHHhHHHhhccCCCEEEEeCCCCCCCHHhHH-HHHHHHHHHhCCCeEEEEecCcchhhccCEEEEEeCCEEEEe
Q 000984 523 LSGGQKQRIAIARAILKDPRILLLDEATSALDAESEK-VVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEK 601 (1198)
Q Consensus 523 lSgGqkqri~lARal~~~~~illlDe~ts~lD~~~~~-~i~~~i~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~ 601 (1198)
|||||||||+||||+|+|+||||||||+||||+|+.+ .+.+||+.++++||+|+|||+++++++||+|++|++|+|.+.
T Consensus 644 LSGGQKqRIsLARAVY~~adIYLLDDplSAVDahvg~~if~~ci~~~L~~KT~ILVTHql~~L~~ad~Iivl~~G~I~~~ 723 (1381)
T KOG0054|consen 644 LSGGQKQRISLARAVYQDADIYLLDDPLSAVDAHVGKHIFEECIRGLLRGKTVILVTHQLQFLPHADQIIVLKDGKIVES 723 (1381)
T ss_pred CcHhHHHHHHHHHHHhccCCEEEEcCcchhhhHhhhHHHHHHHHHhhhcCCEEEEEeCchhhhhhCCEEEEecCCeEecc
Confidence 9999999999999999999999999999999999866 567899999999999999999999999999999999999999
Q ss_pred cChhhHhcCCCchhHHHHHHHhhccccccccccccccchhhhhhhcccccccccccccCCCCCCCCCCcccccccCCCCC
Q 000984 602 GTHSKLVEDPEGAYSQLIRLQEANKESEQTIDGQRKSEISMESLRHSSHRMSLRRSISRGSSIGNSSRHSISVSFGLPSG 681 (1198)
Q Consensus 602 g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 681 (1198)
|+|+||++. +..|.++....+.+.+.+.... . ....+.... ........... .. +.
T Consensus 724 Gty~el~~~-~~~~~~l~~~~~~~~~~~~~~~--~--~~~~~~~~~------~~~~~~~~~~~-~~--~~---------- 779 (1381)
T KOG0054|consen 724 GTYEELLKS-GGDFAELAHEEESEQEEEASEK--D--LESGESSRE------SESRSLESLSS-EE--EK---------- 779 (1381)
T ss_pred cCHHHHHhc-chhHHHHhhccchhhccccccc--c--ccccccccc------hhhhhhhhhcc-cc--cc----------
Confidence 999999976 6677776332221111100000 0 000000000 00000000000 00 00
Q ss_pred CCCcccCCCCCCCCCCCcccCCcchhHhhhhhcCC-h-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhhh
Q 000984 682 QFADTALGEPAGPSQPTEEVAPEVPTRRLAYLNKP-E-IPVILAGTIAAMANGVILPIYGLLISSVIETFFKPPHELKKD 759 (1198)
Q Consensus 682 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 759 (1198)
... .+.......+.+++..+.+.++.++.|.+. + +..++..+++.+...++.....+|+++|.+.-...... ..+
T Consensus 780 ~~~--~~~~~~~~~~~ee~~~G~v~~~vY~~Y~~a~~g~~~~~~~~~~~v~~~~~~~~~~~WLs~W~~~~~~~~~~-~~~ 856 (1381)
T KOG0054|consen 780 SKD--EKEEEDKLVQEEERETGKVSWSVYKKYIKAAGGFLLVLLILLLFVLTQVLQIASNYWLSYWTDDGEDNGTT-TVS 856 (1381)
T ss_pred ccc--ccchhhHHHHHHHHhcCEeeHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccc-CCC
Confidence 000 000000000011112334444444444333 2 22222233444444455555666777776643211100 024
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccccccCCCChhhHHHHHHhhHHHHHHHHHH
Q 000984 760 SRFWALIYLALGAGSFLLSPAQSYFFAVAGNKLIQRIRSMCFEKVIHMEVSWFDEPEHSSGAIGARLSADAASVRALVGD 839 (1198)
Q Consensus 760 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~~l~~~ll~~p~~fFd~~~~~~G~i~~r~s~D~~~i~~~l~~ 839 (1198)
..++.++|.+++++..++..++.+++...+.++++.||++|+++++|+||+||| .+|+|||+|||++|++.+|..+|.
T Consensus 857 ~~~~~~vY~~l~~~~~~~~~~rs~~~~~~~l~aS~~Lh~~ml~~Ilrapm~FFd--tTP~GRILNRFSkD~~~vD~~Lp~ 934 (1381)
T KOG0054|consen 857 TSFYLGVYALLGVASSLLTLLRSFLFAKGGLKASRKLHDKLLNSILRAPMSFFD--TTPTGRILNRFSKDIDTVDVLLPF 934 (1381)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhcC--CCCccchhhhcccchHHHHHhhHH
Confidence 567889999999999999999999999999999999999999999999999999 599999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH----HHHHHHHHHhchhHHH
Q 000984 840 ALARIVQNISTAAAGLIIAFTASWQLALIILVMLPLIGVSGYTQMKFMKGFSADAKMKYE----EASQVANDAVGSIRTV 915 (1198)
Q Consensus 840 ~l~~~i~~~~~~i~~li~~~~~~~~l~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~E~l~gi~tI 915 (1198)
.+..++.+++.+++.++++.+..|++ +++++|+.+++ +++++++.+.+|+.++..+ ...+|+.|+++|+.||
T Consensus 935 ~~~~~~~~~~~~l~~~~vi~~~~P~f---li~~~pl~v~~-~~~~~~Y~~tsReLkRLesitRSPi~sh~~Etl~GlsTI 1010 (1381)
T KOG0054|consen 935 TLEFFLQSLLNVLGILVVISYVTPWF---LIAIIPLGVIY-YFVQRYYLATSRELKRLESITRSPIYSHFSETLQGLSTI 1010 (1381)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHhHHH---HHHHHHHHHHH-HHHHHHHHHHhHHHHHhhhcccchHHHhHHHHhcCccee
Confidence 99999999999999999999888864 44555655554 4455555566888877554 4589999999999999
Q ss_pred HHhcchHHHHHHHHHHhhhHHHHhHHHHHHHhhHHHHH-HHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHH
Q 000984 916 ASFCAEEKVMQLYKKKCEAPMKTGIRQGMVSGGGFGAS-FFLLFAFYAASFYAGARLVEDGKATFSDVFKVFFSLTMTAI 994 (1198)
Q Consensus 916 raf~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~l~~~g~~t~g~l~~~~~~~~~~~~ 994 (1198)
|||++|++|.+++.+..|.+.+..+-..... .|+++. ..+..+...++..+. .+...+..+.|..-..+.|...+..
T Consensus 1011 RAf~~~~rf~~~~~~~~D~~~~~~f~~~~a~-RWla~Rle~ig~~~v~~~al~~-vl~~~~~~~~g~vGLslsyal~lt~ 1088 (1381)
T KOG0054|consen 1011 RAFGKEERFIQENDELIDENSRAFFLSISAN-RWLAVRLELLGNLVVLIAALFA-VLLPSGLISPGLVGLSLSYALQLTG 1088 (1381)
T ss_pred eeccccHHHHHHHHHHhhhhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH-HHccCCCCCcchHHHHHHHHHHHHH
Confidence 9999999999999999999998766443332 233332 222222222222222 2222222556777777888888888
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHhcCCCCCCCCCCC--CCcccCCcccEEEeeeeEECCCCCCccccccceEEeeCCC
Q 000984 995 GISQSSSFSSDSNKAKSAAASIFAIIDRESKIDPSDES--GTILEDVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGK 1072 (1198)
Q Consensus 995 ~l~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~--~~~~~~~~G~I~f~nVsf~Y~~~~~~~vL~~is~~I~~Ge 1072 (1198)
.+..+.....+.++.+.|+||+.+|.+.++|.+...+. +++.+|.+|+|+|+|++.+|.++ .++|||||||+|+|||
T Consensus 1089 ~l~~~vR~~~elEn~m~SVERv~eY~~~~~E~p~~~~~~~pp~~WP~~G~I~f~~~~~RYrp~-lp~VLk~is~~I~p~e 1167 (1381)
T KOG0054|consen 1089 LLQWLVRQSSELENNMVSVERVLEYTDIPSEAPLEIEESRPPPSWPSKGEIEFEDLSLRYRPN-LPLVLKGISFTIKPGE 1167 (1381)
T ss_pred HHHHHHHHHHHHHhcchhhhHHHHHhcCCCCCCCCCcCCCCCCCCCCCCeEEEEEeEEEeCCC-CcchhcCceEEEcCCc
Confidence 88999999999999999999999999987763222211 34457789999999999999754 4579999999999999
Q ss_pred EEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHhhcceeccccccccccHHHHHhcCCCCCCCHHHH
Q 000984 1073 TVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEI 1152 (1198)
Q Consensus 1073 kvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~~i~l~~LR~~IsiV~Qdp~LF~gTIreNI~~g~~~~~tdeei 1152 (1198)
|||||||||||||||+++|+|+.||.+|+|.|||+||++++|++||+++++|||||+||+||+|+||++ .+++||+||
T Consensus 1168 KVGIVGRTGaGKSSL~~aLFRl~e~~~G~I~IDgvdI~~igL~dLRsrlsIIPQdPvLFsGTvR~NLDP--f~e~sD~~I 1245 (1381)
T KOG0054|consen 1168 KVGIVGRTGAGKSSLILALFRLVEPAEGEILIDGVDISKIGLHDLRSRLSIIPQDPVLFSGTVRFNLDP--FDEYSDDEI 1245 (1381)
T ss_pred eEEEeCCCCCCHHHHHHHHHHhcCccCCeEEEcCeecccccHHHHHhcCeeeCCCCceecCccccccCc--ccccCHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999965 568999999
Q ss_pred HHHHHHcchHHHHHhccccccceee
Q 000984 1153 QAASEMANAHKFICSLQQVRTSRLL 1177 (1198)
Q Consensus 1153 ~~Al~~A~l~dfI~~LP~g~dt~v~ 1177 (1198)
|+|+|+|+++++|+++|+|+|++|.
T Consensus 1246 W~ALe~~~Lk~~v~~~p~~Ld~~v~ 1270 (1381)
T KOG0054|consen 1246 WEALERCQLKDVVSSLPGGLDSEVS 1270 (1381)
T ss_pred HHHHHHhChHHHHhhCCcCCCceec
Confidence 9999999999999999999999874
|
|
| >PLN03130 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-130 Score=1307.00 Aligned_cols=982 Identities=18% Similarity=0.229 Sum_probs=714.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhCChhhhhccCCcchHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhHHHH
Q 000984 129 ITGERQATRIRGLYLKTILRQDVAFFDNETNTGEVVGRMSGDTVLIQDAMGEKVGKFLQLMATFLGGFLIAF-IKGWLLT 207 (1198)
Q Consensus 129 ~~~~~~~~~lr~~~~~~ll~~~~~~f~~~~~~G~i~~r~s~D~~~i~~~~~~~~~~~~~~~~~~i~~~i~~~-~~~~~l~ 207 (1198)
..+.++...++..+++++++.+...+++ .++|+++|++++|++++++.... +..++...+.++..+++++ .++|. +
T Consensus 367 ~~~~~ir~~L~~~i~~k~L~l~~~~~~~-~~~G~ivnl~s~Dv~~i~~~~~~-l~~l~~~pl~ii~~~~lL~~~lg~~-~ 443 (1622)
T PLN03130 367 RVGFRLRSTLVAAVFRKSLRLTHEGRKK-FTSGKITNLMTTDAEALQQICQQ-LHTLWSAPFRIIIAMVLLYQQLGVA-S 443 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHhcCChhhcCC-CCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH-H
Confidence 3445555566667889999999998876 48999999999999999998743 3333333333333332222 23332 2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000984 208 LVMLSSIPLLAMSGGVMAIMISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYKSGVQEGLAA 287 (1198)
Q Consensus 208 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (1198)
++.++++.+++++..++.+..++..++.++..+++.+.+.|.++|+++||+|+||+.+.+++.+.++++.+...+.....
T Consensus 444 l~g~~v~~l~~~l~~~~~~~~~~~~~~~~~~~d~r~~~~~E~L~gi~~IK~~~~E~~~~~~i~~~r~~e~~~~~~~~~~~ 523 (1622)
T PLN03130 444 LIGSLMLVLMFPIQTFIISKMQKLTKEGLQRTDKRIGLMNEVLAAMDTVKCYAWENSFQSKVQTVRDDELSWFRKAQLLS 523 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222333444455566777778888888889999999999999999999999999999999999888777666655554
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCC
Q 000984 288 GIGLGMVMLIVFCSYALSVWYGGKLILEEGYNGGQVVNVMVAVLTGSMSLGEASPCLSAFGAGQAAAFKMFETINRKPEI 367 (1198)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~ 367 (1198)
++...+..... ..+.++++|.+++..+.++++.+++++..+.....++..++..+..+..+..+.+|+.+++..+++.
T Consensus 524 ~~~~~~~~~~~--~~v~~~~fg~~~~~~g~Lt~g~vf~~l~l~~~l~~pl~~l~~~i~~~~~a~~s~~RI~~~L~~~e~~ 601 (1622)
T PLN03130 524 AFNSFILNSIP--VLVTVVSFGVFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNLITQAVNANVSLKRLEELLLAEERV 601 (1622)
T ss_pred HHHHHHHHHHH--HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccc
Confidence 44332222111 1234455677777788999999988777666667788777778899999999999999998754332
Q ss_pred CccCCCCcccCCCcccEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCC-CeEEEC
Q 000984 368 DAYDTKGKILDDIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQA-GEVLID 446 (1198)
Q Consensus 368 ~~~~~~~~~~~~~~g~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~-G~i~i~ 446 (1198)
.... . ...+..+.|+++|++|+|+.++++++|+|+||+|++||+++||||||||||||+++|+|+++|.+ |+|.+.
T Consensus 602 ~~~~--~-~~~~~~~~I~~~nvsf~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~GG~I~l~ 678 (1622)
T PLN03130 602 LLPN--P-PLEPGLPAISIKNGYFSWDSKAERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPRSDASVVIR 678 (1622)
T ss_pred cccC--C-cccCCCCceEEEeeEEEccCCCCCceeeceeEEecCCCEEEEECCCCCCHHHHHHHHHHhhccCCCceEEEc
Confidence 1111 1 11112346999999999986545679999999999999999999999999999999999999999 999865
Q ss_pred CeecCCcCHHHHhcceEEEcCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChH
Q 000984 447 GINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGG 526 (1198)
Q Consensus 447 g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgG 526 (1198)
| +|+||+|+||||+|||||||+||.| +++++++++++.|+++++++.||+|++|.|||+|.+||||
T Consensus 679 ~-------------~Iayv~Q~p~LfngTIreNI~fg~~-~d~e~y~~vl~a~~L~~di~~LP~Gd~T~IGe~G~~LSGG 744 (1622)
T PLN03130 679 G-------------TVAYVPQVSWIFNATVRDNILFGSP-FDPERYERAIDVTALQHDLDLLPGGDLTEIGERGVNISGG 744 (1622)
T ss_pred C-------------eEEEEcCccccCCCCHHHHHhCCCc-ccHHHHHHHHHHhCcHHHHHhCCCcccccccCCCCCCCHH
Confidence 4 8999999999999999999999987 5899999999999999999999999999999999999999
Q ss_pred HHHHHhHHHhhccCCCEEEEeCCCCCCCHHhHHHH-HHHHHHHhCCCeEEEEecCcchhhccCEEEEEeCCEEEEecChh
Q 000984 527 QKQRIAIARAILKDPRILLLDEATSALDAESEKVV-QEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHS 605 (1198)
Q Consensus 527 qkqri~lARal~~~~~illlDe~ts~lD~~~~~~i-~~~i~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~ 605 (1198)
|||||+||||+|++|+||||||||||||+++++.+ +++++..++++|+|+|||+++.++.||+|++|++|+|+++|+|+
T Consensus 745 QKQRIaLARAly~~~~IlLLDEptSALD~~~~~~I~~~~l~~~l~~kTvIlVTH~l~~l~~aD~Ii~L~~G~i~e~Gt~~ 824 (1622)
T PLN03130 745 QKQRVSMARAVYSNSDVYIFDDPLSALDAHVGRQVFDKCIKDELRGKTRVLVTNQLHFLSQVDRIILVHEGMIKEEGTYE 824 (1622)
T ss_pred HHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHhhHHhcCCEEEEEECCHhHHHhCCEEEEEeCCEEEEeCCHH
Confidence 99999999999999999999999999999998765 57788778899999999999999999999999999999999999
Q ss_pred hHhcCCCchhHHHHHHHhhccccccccccccccchhhhhhhcccccccccccccCCCCCCCCCCcccccccCCCCCCCCc
Q 000984 606 KLVEDPEGAYSQLIRLQEANKESEQTIDGQRKSEISMESLRHSSHRMSLRRSISRGSSIGNSSRHSISVSFGLPSGQFAD 685 (1198)
Q Consensus 606 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 685 (1198)
||+++ ++.|.++...+....+..+.... +. ..+ . . .. ........ ......... ...
T Consensus 825 eL~~~-~~~~~~l~~~~~~~~~~~~~~~~-~~-~~~-~---~------~~-~~~~~~~~-~~~~~~~~~-------~~~- 881 (1622)
T PLN03130 825 ELSNN-GPLFQKLMENAGKMEEYVEENGE-EE-DDQ-T---S------SK-PVANGNAN-NLKKDSSSK-------KKS- 881 (1622)
T ss_pred HHHhc-chhHHHHHHhccccccccccccc-cc-ccc-c---c------cc-cccccccc-ccccccccc-------ccc-
Confidence 99976 67788877543211111000000 00 000 0 0 00 00000000 000000000 000
Q ss_pred ccCCCCCCCCCCCcccCCcchhHhhhhhcCC--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhhhhHHH
Q 000984 686 TALGEPAGPSQPTEEVAPEVPTRRLAYLNKP--EIPVILAGTIAAMANGVILPIYGLLISSVIETFFKPPHELKKDSRFW 763 (1198)
Q Consensus 686 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 763 (1198)
... . ......+++..+.+.+..+.+|.+. ..+.+++.+++.++..++....++|++.|.+..... ......|
T Consensus 882 ~~~-~-~~~~~~e~~~~g~v~~~vy~~Y~~~~g~~~~~~~~~~~~~~~~~~~~~~~~wl~~w~~~~~~~----~~~~~~~ 955 (1622)
T PLN03130 882 KEG-K-SVLIKQEERETGVVSWKVLERYKNALGGAWVVMILFLCYVLTEVFRVSSSTWLSEWTDQGTPK----THGPLFY 955 (1622)
T ss_pred ccc-c-hhhhhHHHHhcCccCHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccC----CCchhHH
Confidence 000 0 0000001111222334444444322 222222223333333444445556677666543211 1123456
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccccccCCCChhhHHHHHHhhHHHHHHHHHHHHHH
Q 000984 764 ALIYLALGAGSFLLSPAQSYFFAVAGNKLIQRIRSMCFEKVIHMEVSWFDEPEHSSGAIGARLSADAASVRALVGDALAR 843 (1198)
Q Consensus 764 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~~l~~~ll~~p~~fFd~~~~~~G~i~~r~s~D~~~i~~~l~~~l~~ 843 (1198)
+++|++++++..++.+++.+++...+.++++++|++++++++++|++||| ++|+|+|+|||++|++.++..++..+..
T Consensus 956 ~~i~~~l~~~~~i~~~~~~~~~~~~~~~~~~~L~~~l~~~ll~~p~~ffd--~~~~G~IlnR~s~Di~~id~~l~~~~~~ 1033 (1622)
T PLN03130 956 NLIYALLSFGQVLVTLLNSYWLIMSSLYAAKRLHDAMLGSILRAPMSFFH--TNPLGRIINRFAKDLGDIDRNVAVFVNM 1033 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhc--cCCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77788888888899999999999999999999999999999999999999 5999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH----HHHHHHHHHHHHHhchhHHHHHhc
Q 000984 844 IVQNISTAAAGLIIAFTASWQLALIILVMLPLIGVSGYTQMKFMKGFSADAK----MKYEEASQVANDAVGSIRTVASFC 919 (1198)
Q Consensus 844 ~i~~~~~~i~~li~~~~~~~~l~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~E~l~gi~tIraf~ 919 (1198)
++..++.+++.++++++++|...+ +++|+.++++... +++.+..++.+ ...+...+++.|+++|++|||+|+
T Consensus 1034 ~~~~~~~~i~~~i~i~~~~~~~~~---~~~pl~~~~~~~~-~~~~~~~r~~~r~~~~~~s~~~~~~~Etl~Gi~tIraf~ 1109 (1622)
T PLN03130 1034 FLGQIFQLLSTFVLIGIVSTISLW---AIMPLLVLFYGAY-LYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYK 1109 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhcchHHHHHHHHhCCHHHHHhCc
Confidence 999999999999888888874332 3333333322222 22223333333 344567899999999999999999
Q ss_pred chHHHHHHHHHHhhhHHHHhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhcCC---------cCHHHHHHHHHHHH
Q 000984 920 AEEKVMQLYKKKCEAPMKTGIRQGMVSGGGFGASFFLLFAFYAASFYAGARLVEDGK---------ATFSDVFKVFFSLT 990 (1198)
Q Consensus 920 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~---------~t~g~l~~~~~~~~ 990 (1198)
.++++.+++.+..+...+..+..............+ +..+++++.+...+..+. .++|.+++ +..
T Consensus 1110 ~~~~f~~~~~~~~~~~~~~~~~~~~~~~wl~~~l~~---~~~~~i~~~~~~~v~~~~~~~~~~~~~~~~G~~ls---~~~ 1183 (1622)
T PLN03130 1110 AYDRMAEINGRSMDNNIRFTLVNMSSNRWLAIRLET---LGGLMIWLTASFAVMQNGRAENQAAFASTMGLLLS---YAL 1183 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHcccccccchhhhHHHHHHHH---HHH
Confidence 999888888777776655433222211111111111 111222222333333321 23343333 444
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHHhcCCCCCCCCCC--CCCcccCCcccEEEeeeeEECCCCCCccccccceEEe
Q 000984 991 MTAIGISQSSSFSSDSNKAKSAAASIFAIIDRESKIDPSDE--SGTILEDVKGEIELHHVSFKYPSRPDVQVFRDLNLKI 1068 (1198)
Q Consensus 991 ~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~--~~~~~~~~~G~I~f~nVsf~Y~~~~~~~vL~~is~~I 1068 (1198)
.+..++..+......++..+.+++|+.++++.++|.+...+ .+++.++.+|.|+|+||+|+|+++ .++||+||||+|
T Consensus 1184 ~~~~~l~~l~~~~~~~e~~~~sveRi~e~~~~~~E~~~~~~~~~~~~~wp~~g~I~f~nVsf~Y~~~-~~~VL~~is~~I 1262 (1622)
T PLN03130 1184 NITSLLTAVLRLASLAENSLNAVERVGTYIDLPSEAPLVIENNRPPPGWPSSGSIKFEDVVLRYRPE-LPPVLHGLSFEI 1262 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccccccCCCCCCCCCCCCcEEEEEEEEEeCCC-CCceecceeEEE
Confidence 55556666666777889999999999999988766432111 111223467899999999999643 347999999999
Q ss_pred eCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHhhcceeccccccccccHHHHHhcCCCCCCC
Q 000984 1069 RAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDAT 1148 (1198)
Q Consensus 1069 ~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~~i~l~~LR~~IsiV~Qdp~LF~gTIreNI~~g~~~~~t 1148 (1198)
+||||||||||||||||||+++|+|||+|++|+|+|||+||+++++++||++|++|||||+||+|||||||++++ ++|
T Consensus 1263 ~~GekVaIVGrSGSGKSTLl~lL~rl~~p~~G~I~IDG~dI~~i~l~~LR~~IsiVpQdp~LF~GTIreNLd~~~--~~t 1340 (1622)
T PLN03130 1263 SPSEKVGIVGRTGAGKSSMLNALFRIVELERGRILIDGCDISKFGLMDLRKVLGIIPQAPVLFSGTVRFNLDPFN--EHN 1340 (1622)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCEecccCCHHHHHhccEEECCCCccccccHHHHhCcCC--CCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999984 689
Q ss_pred HHHHHHHHHHcchHHHHHhcccccccee
Q 000984 1149 EAEIQAASEMANAHKFICSLQQVRTSRL 1176 (1198)
Q Consensus 1149 deei~~Al~~A~l~dfI~~LP~g~dt~v 1176 (1198)
|||+|+||++|+++|||++||+||||+|
T Consensus 1341 deei~~Al~~a~l~~~I~~lp~GLdt~V 1368 (1622)
T PLN03130 1341 DADLWESLERAHLKDVIRRNSLGLDAEV 1368 (1622)
T ss_pred HHHHHHHHHHcCcHHHHHhCccccCccc
Confidence 9999999999999999999999999987
|
|
| >PLN03232 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-129 Score=1294.65 Aligned_cols=985 Identities=18% Similarity=0.230 Sum_probs=715.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhCChhhhhccCCcchHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhHHHH
Q 000984 129 ITGERQATRIRGLYLKTILRQDVAFFDNETNTGEVVGRMSGDTVLIQDAMGEKVGKFLQLMATFLGGFLIAF-IKGWLLT 207 (1198)
Q Consensus 129 ~~~~~~~~~lr~~~~~~ll~~~~~~f~~~~~~G~i~~r~s~D~~~i~~~~~~~~~~~~~~~~~~i~~~i~~~-~~~~~l~ 207 (1198)
..+.++...++..+++++++.+...+++ .++|+++|++++|++++++... .+..++...+.++.++++++ .++|. +
T Consensus 367 ~~~~~ir~~l~~~i~~k~l~l~~~~~~~-~~~G~i~n~ls~Dv~~i~~~~~-~l~~l~~~p~~ii~~~~~l~~~lg~~-~ 443 (1495)
T PLN03232 367 RVGFRLRSTLVAAIFHKSLRLTHEARKN-FASGKVTNMITTDANALQQIAE-QLHGLWSAPFRIIVSMVLLYQQLGVA-S 443 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHhcCChhhcCC-CCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhHH-H
Confidence 4455555666668889999999988876 4899999999999999999753 23333333222222222211 11121 1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000984 208 LVMLSSIPLLAMSGGVMAIMISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYKSGVQEGLAA 287 (1198)
Q Consensus 208 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (1198)
++.++++.+++++..++.+..++..++.++..+++.+.++|.++|+++||+|+||+.+.+++.+.++++.+...+.....
T Consensus 444 l~~~~v~~l~~pl~~~~~~~~~~~~~~~~~~~d~r~~~~~E~l~gi~~IK~~~~e~~~~~~~~~~r~~e~~~~~~~~~~~ 523 (1495)
T PLN03232 444 LFGSLILFLLIPLQTLIVRKMRKLTKEGLQWTDKRVGIINEILASMDTVKCYAWEKSFESRIQGIRNEELSWFRKAQLLS 523 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11122222333345566777888888888899999999999999999999999999999999999888887777666555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCC
Q 000984 288 GIGLGMVMLIVFCSYALSVWYGGKLILEEGYNGGQVVNVMVAVLTGSMSLGEASPCLSAFGAGQAAAFKMFETINRKPEI 367 (1198)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~ 367 (1198)
++...+.... ...+.++++|.+++..+.++++.+++++..+.....++..++..+..+..+..+.+|+.++++.+++.
T Consensus 524 ~~~~~~~~~~--~~~~~~~~fg~~~v~~~~lt~g~vf~~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~~L~~~~~~ 601 (1495)
T PLN03232 524 AFNSFILNSI--PVVVTLVSFGVFVLLGGDLTPARAFTSLSLFAVLRSPLNMLPNLLSQVVNANVSLQRIEELLLSEERI 601 (1495)
T ss_pred HHHHHHHHHH--HHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccc
Confidence 4433222111 11223456677777788899999998877776667778777778899999999999999999765432
Q ss_pred CccCCCCcccCCCcccEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECC
Q 000984 368 DAYDTKGKILDDIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDG 447 (1198)
Q Consensus 368 ~~~~~~~~~~~~~~g~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g 447 (1198)
.... ....+..+.|+++|++|+|+.++++++|+|+||+|++||+++||||||||||||+++|+|+++|.+|.+.
T Consensus 602 ~~~~---~~~~~~~~~I~~~~vsF~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~G~i~--- 675 (1495)
T PLN03232 602 LAQN---PPLQPGAPAISIKNGYFSWDSKTSKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAETSSV--- 675 (1495)
T ss_pred cccc---CCcCCCCCcEEEEeeEEEcCCCCCCceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCcccCCCEE---
Confidence 2111 1111123469999999999864456899999999999999999999999999999999999999998763
Q ss_pred eecCCcCHHHHhcceEEEcCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHH
Q 000984 448 INLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQ 527 (1198)
Q Consensus 448 ~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGq 527 (1198)
.+|++|+||+|+||||+|||||||+||.+ +++++++++++.|+++++++.+|+||+|.|||+|.+|||||
T Consensus 676 ---------~~~~~Iayv~Q~p~Lf~gTIreNI~fg~~-~~~e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G~~LSGGQ 745 (1495)
T PLN03232 676 ---------VIRGSVAYVPQVSWIFNATVRENILFGSD-FESERYWRAIDVTALQHDLDLLPGRDLTEIGERGVNISGGQ 745 (1495)
T ss_pred ---------EecCcEEEEcCccccccccHHHHhhcCCc-cCHHHHHHHHHHhCCHHHHHhCCCCCCceecCCCcccCHHH
Confidence 24679999999999999999999999986 78999999999999999999999999999999999999999
Q ss_pred HHHHhHHHhhccCCCEEEEeCCCCCCCHHhHHHH-HHHHHHHhCCCeEEEEecCcchhhccCEEEEEeCCEEEEecChhh
Q 000984 528 KQRIAIARAILKDPRILLLDEATSALDAESEKVV-QEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSK 606 (1198)
Q Consensus 528 kqri~lARal~~~~~illlDe~ts~lD~~~~~~i-~~~i~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~ 606 (1198)
||||+||||+|++|+||||||||||||+++++.+ +++++...+++|+|+||||++.++.||+|++|++|+|++.|+|+|
T Consensus 746 kQRIaLARAly~~~~IlLLDEptSaLD~~t~~~I~~~~l~~~l~~kT~IlvTH~~~~l~~aD~Ii~L~~G~i~~~Gt~~e 825 (1495)
T PLN03232 746 KQRVSMARAVYSNSDIYIFDDPLSALDAHVAHQVFDSCMKDELKGKTRVLVTNQLHFLPLMDRIILVSEGMIKEEGTFAE 825 (1495)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhhcCCEEEEEECChhhHHhCCEEEEEeCCEEEEecCHHH
Confidence 9999999999999999999999999999998866 566777778999999999999999999999999999999999999
Q ss_pred HhcCCCchhHHHHHHHhhccccccccccccccchhhhhhhcccccccccccccCCCCCCCCCCcccccccCCCCCCCCcc
Q 000984 607 LVEDPEGAYSQLIRLQEANKESEQTIDGQRKSEISMESLRHSSHRMSLRRSISRGSSIGNSSRHSISVSFGLPSGQFADT 686 (1198)
Q Consensus 607 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 686 (1198)
++++ ++.|.++++.+...++..+ .. +..+ .... ....... ... . .. .. .....
T Consensus 826 L~~~-~~~~~~l~~~~~~~~~~~~-~~--~~~~----~~~~------~~~~~~~-~~~--~-~~-~~--------~~~~~ 878 (1495)
T PLN03232 826 LSKS-GSLFKKLMENAGKMDATQE-VN--TNDE----NILK------LGPTVTI-DVS--E-RN-LG--------STKQG 878 (1495)
T ss_pred HHhc-chhHHHHHHhccccccccc-cc--cccc----cccc------ccccccc-ccc--c-cc-cc--------ccccc
Confidence 9976 6788888764432111100 00 0000 0000 0000000 000 0 00 00 00000
Q ss_pred cCCCCCCCCCCCcccCCcchhHhhhhhcCCh--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhhhhHHHH
Q 000984 687 ALGEPAGPSQPTEEVAPEVPTRRLAYLNKPE--IPVILAGTIAAMANGVILPIYGLLISSVIETFFKPPHELKKDSRFWA 764 (1198)
Q Consensus 687 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 764 (1198)
.. ......+.+++..+.+.++.+++|.+.. ++.+.+.+++.++..++.....+|++.|.+.... .......|+
T Consensus 879 ~~-~~~~~~~~e~~~~g~v~~~vy~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~w~~~~~~----~~~~~~~~l 953 (1495)
T PLN03232 879 KR-GRSVLVKQEERETGIISWNVLMRYNKAVGGLWVVMILLVCYLTTEVLRVSSSTWLSIWTDQSTP----KSYSPGFYI 953 (1495)
T ss_pred cc-chhhhhhHHHHhcCcccHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCC----CCCCcchHH
Confidence 00 0000000011112223344444444332 2222222233333333333344555555432110 011234678
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccccccCCCChhhHHHHHHhhHHHHHHHHHHHHHHH
Q 000984 765 LIYLALGAGSFLLSPAQSYFFAVAGNKLIQRIRSMCFEKVIHMEVSWFDEPEHSSGAIGARLSADAASVRALVGDALARI 844 (1198)
Q Consensus 765 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~~l~~~ll~~p~~fFd~~~~~~G~i~~r~s~D~~~i~~~l~~~l~~~ 844 (1198)
++|++++++..++.+++.+++...+.++++++|++++++++++|++||| ++++|+|+|||++|++.++..++..+..+
T Consensus 954 ~~y~~l~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~p~~ff~--~~~~G~ilnr~s~Di~~id~~l~~~~~~~ 1031 (1495)
T PLN03232 954 VVYALLGFGQVAVTFTNSFWLISSSLHAAKRLHDAMLNSILRAPMLFFH--TNPTGRVINRFSKDIGDIDRNVANLMNMF 1031 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeeC--cCCchHHHHHhHhhHHHHHHHHHHHHHHH
Confidence 8888889999999999999999999999999999999999999999999 59999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH---HHHhhhHHHHHHHHHHHHHHHHHHhchhHHHHHhcch
Q 000984 845 VQNISTAAAGLIIAFTASWQLALIILVMLPLIGVSGYTQM---KFMKGFSADAKMKYEEASQVANDAVGSIRTVASFCAE 921 (1198)
Q Consensus 845 i~~~~~~i~~li~~~~~~~~l~l~~l~~~pl~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIraf~~e 921 (1198)
+..++.+++.+++++++++...+ +++|+.+++..... +..+...+......+...+++.|+++|++|||+|+++
T Consensus 1032 ~~~~~~~i~~~i~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~s~~~~~~~E~l~G~~tIraf~~~ 1108 (1495)
T PLN03232 1032 MNQLWQLLSTFALIGTVSTISLW---AIMPLLILFYAAYLYYQSTSREVRRLDSVTRSPIYAQFGEALNGLSSIRAYKAY 1108 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHhcChHHHhcCCcH
Confidence 99998888888888777753322 23343333222222 2222233333445566789999999999999999999
Q ss_pred HHHHHHHHHHhhhHHHHhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHh-cCCc----CHHH-HHHHHHHHHHHHHH
Q 000984 922 EKVMQLYKKKCEAPMKTGIRQGMVSGGGFGASFFLLFAFYAASFYAGARLVE-DGKA----TFSD-VFKVFFSLTMTAIG 995 (1198)
Q Consensus 922 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~-~g~~----t~g~-l~~~~~~~~~~~~~ 995 (1198)
+++.+++.+..+...+..+...... .+..... ..+..+++++.+...+. .+.+ .++. +..++.+...+..+
T Consensus 1109 ~~~~~~~~~~~~~~~~~~~~~~~~~-~wl~~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 1185 (1495)
T PLN03232 1109 DRMAKINGKSMDNNIRFTLANTSSN-RWLTIRL--ETLGGVMIWLTATFAVLRNGNAENQAGFASTMGLLLSYTLNITTL 1185 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH--HHHHHHHHHHHHHHHHHccccccccccchHHHHHHHHHHHHHHHH
Confidence 9988888887776665544322221 1111111 11112222222333333 2322 1122 22345566667778
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHhcCCCCCCCCCCC--CCcccCCcccEEEeeeeEECCCCCCccccccceEEeeCCCE
Q 000984 996 ISQSSSFSSDSNKAKSAAASIFAIIDRESKIDPSDES--GTILEDVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKT 1073 (1198)
Q Consensus 996 l~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~--~~~~~~~~G~I~f~nVsf~Y~~~~~~~vL~~is~~I~~Gek 1073 (1198)
+..+......++.++.+++|+.++++.++|.+...+. .++.++.+|+|+|+||+|+|+++ .++||+|+||+|+||||
T Consensus 1186 l~~l~~~~~~~~~~~~s~eRi~e~~~~~~e~~~~~~~~~~~~~~p~~g~I~f~nVsf~Y~~~-~~~vL~~isl~I~~Gek 1264 (1495)
T PLN03232 1186 LSGVLRQASKAENSLNSVERVGNYIDLPSEATAIIENNRPVSGWPSRGSIKFEDVHLRYRPG-LPPVLHGLSFFVSPSEK 1264 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccccCCCCCCCCCCCCcEEEEEEEEEECCC-CCcccccceEEEcCCCE
Confidence 8888888999999999999999999887664321111 11123457899999999999643 34799999999999999
Q ss_pred EEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHhhcceeccccccccccHHHHHhcCCCCCCCHHHHH
Q 000984 1074 VALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQ 1153 (1198)
Q Consensus 1074 vaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~~i~l~~LR~~IsiV~Qdp~LF~gTIreNI~~g~~~~~tdeei~ 1153 (1198)
||||||||||||||+++|+|+|+|++|+|+|||+||+++++++||++|++|||||+||+|||||||++++ ++||||+|
T Consensus 1265 vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~~i~iVpQdp~LF~gTIr~NL~~~~--~~sdeei~ 1342 (1495)
T PLN03232 1265 VGVVGRTGAGKSSMLNALFRIVELEKGRIMIDDCDVAKFGLTDLRRVLSIIPQSPVLFSGTVRFNIDPFS--EHNDADLW 1342 (1495)
T ss_pred EEEECCCCCCHHHHHHHHhCCCcCCCceEEECCEEhhhCCHHHHHhhcEEECCCCeeeCccHHHHcCCCC--CCCHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999974 69999999
Q ss_pred HHHHHcchHHHHHhccccccceee
Q 000984 1154 AASEMANAHKFICSLQQVRTSRLL 1177 (1198)
Q Consensus 1154 ~Al~~A~l~dfI~~LP~g~dt~v~ 1177 (1198)
+|+++|+++|||++||+||||+|.
T Consensus 1343 ~al~~a~l~~~I~~lp~GLdt~v~ 1366 (1495)
T PLN03232 1343 EALERAHIKDVIDRNPFGLDAEVS 1366 (1495)
T ss_pred HHHHHcCCHHHHHhCcCCCCceec
Confidence 999999999999999999999874
|
|
| >TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-125 Score=1259.17 Aligned_cols=1019 Identities=18% Similarity=0.200 Sum_probs=740.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCChhhhhccCCcchHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhHH
Q 000984 127 WMITGERQATRIRGLYLKTILRQDVAFFDNETNTGEVVGRMSGDTVLIQDAMGEKVGKFLQLMATFLGGFLIAF-IKGWL 205 (1198)
Q Consensus 127 ~~~~~~~~~~~lr~~~~~~ll~~~~~~f~~~~~~G~i~~r~s~D~~~i~~~~~~~~~~~~~~~~~~i~~~i~~~-~~~~~ 205 (1198)
....+.++...++..+++++++.+...++.. ++|+++|++++|++++.+.... +..++...+.++.++++++ ..+|
T Consensus 382 ~~~~~~~ir~~L~~~iy~K~L~l~~~~~~~~-~~G~i~nl~s~D~~~i~~~~~~-~~~~~~~~~~i~~~~~ll~~~~g~- 458 (1522)
T TIGR00957 382 CFVSGMRIKTAVMGAVYRKALVITNSARKSS-TVGEIVNLMSVDAQRFMDLATY-INMIWSAPLQVILALYFLWLNLGP- 458 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCChhhcCCC-CHHHHHHHHHHhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhH-
Confidence 3345666667777788999999999988864 8999999999999999886543 2233333333333222222 2333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHH
Q 000984 206 LTLVMLSSIPLLAMSGGVMAIMISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYKSGVQEGL 285 (1198)
Q Consensus 206 l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 285 (1198)
.+++.++++++++++..++.+..++..++.++..+++.+.+.|.++||++||+|+||+.+.+++.+.+.++.+...+...
T Consensus 459 ~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~r~~~~~E~l~~ik~IK~~~~e~~~~~~i~~~r~~e~~~~~~~~~ 538 (1522)
T TIGR00957 459 SVLAGVAVMVLMVPLNAVMAMKTKTYQVAHMKSKDNRIKLMNEILNGIKVLKLYAWELAFLDKVEGIRQEELKVLKKSAY 538 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445556666677777888888888899999999999999999999999999999999999999888776655555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Q 000984 286 AAGIGLGMVMLIVFCSYALSVWYGGKLIL--EEGYNGGQVVNVMVAVLTGSMSLGEASPCLSAFGAGQAAAFKMFETINR 363 (1198)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~g~~l~~--~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~ 363 (1198)
...+.......... .+..+.++.+.+. .+.++.+.+++.+..+.....++..++..+..+..+..+.+|+.+++..
T Consensus 539 ~~~~~~~~~~~~~~--~~~~~~f~~~~~~~~~~~l~~~~~f~~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~~l~~ 616 (1522)
T TIGR00957 539 LHAVGTFTWVCTPF--LVALITFAVYVTVDENNILDAEKAFVSLALFNILRFPLNILPMVISSIVQASVSLKRLRIFLSH 616 (1522)
T ss_pred HHHHHHHHHHHHHH--HHHHHHHHHHHHhcCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 44332222111111 1112223334443 3457888888766555555667888888899999999999999999976
Q ss_pred CCCCCccCCCCcccCCCcccEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeE
Q 000984 364 KPEIDAYDTKGKILDDIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 443 (1198)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~g~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i 443 (1198)
+++...............+.|+++|++|+|+.+ ++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|
T Consensus 617 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~~~l~~isl~i~~G~~v~IvG~~GsGKSTLl~~l~g~~~~~~G~i 695 (1522)
T TIGR00957 617 EELEPDSIERRTIKPGEGNSITVHNATFTWARD-LPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHV 695 (1522)
T ss_pred cccccccccccccCCCCCCcEEEEEeEEEcCCC-CCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCccCCcEE
Confidence 543211100000001112369999999999743 3579999999999999999999999999999999999999999999
Q ss_pred EECCeecCCcCHHHHhcceEEEcCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCC
Q 000984 444 LIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQL 523 (1198)
Q Consensus 444 ~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~l 523 (1198)
.+|| +|+||||+||+|++||||||.||.+ .++++++++++.|++.+++..+|+|++|.+|++|.+|
T Consensus 696 ~~~g-------------~i~yv~Q~~~l~~~Ti~eNI~~g~~-~~~~~~~~~~~~~~l~~~l~~~~~g~~t~ig~~g~~L 761 (1522)
T TIGR00957 696 HMKG-------------SVAYVPQQAWIQNDSLRENILFGKA-LNEKYYQQVLEACALLPDLEILPSGDRTEIGEKGVNL 761 (1522)
T ss_pred EECC-------------EEEEEcCCccccCCcHHHHhhcCCc-cCHHHHHHHHHHhCCHHHHHhcCCCCCceecCCCCCC
Confidence 9998 6999999999999999999999875 5678889999999999999999999999999999999
Q ss_pred ChHHHHHHhHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHH---HHhCCCeEEEEecCcchhhccCEEEEEeCCEEEE
Q 000984 524 SGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALD---RIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVE 600 (1198)
Q Consensus 524 SgGqkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~---~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~ 600 (1198)
|||||||++||||+|++|+|+|||||||+||+++++.+.+.+. +..+++|+|+|||+++.+..||+|++|++|++++
T Consensus 762 SGGQkqRiaLARAl~~~~~illLDEp~saLD~~~~~~i~~~l~~~~~~~~~~tvIlvTH~~~~l~~~D~ii~l~~G~i~~ 841 (1522)
T TIGR00957 762 SGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFEHVIGPEGVLKNKTRILVTHGISYLPQVDVIIVMSGGKISE 841 (1522)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhhhhcCCEEEEEeCChhhhhhCCEEEEecCCeEEe
Confidence 9999999999999999999999999999999999999988875 3467899999999999999999999999999999
Q ss_pred ecChhhHhcCCCchhHHHHHHHhhcccccccccc-ccccchhhhhhhcccccccccccccCC--CCCCCCCCcccccccC
Q 000984 601 KGTHSKLVEDPEGAYSQLIRLQEANKESEQTIDG-QRKSEISMESLRHSSHRMSLRRSISRG--SSIGNSSRHSISVSFG 677 (1198)
Q Consensus 601 ~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 677 (1198)
.|+++++.++ ++.|.++...+....+.+...+. ........................... ................
T Consensus 842 ~g~~~~l~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 920 (1522)
T TIGR00957 842 MGSYQELLQR-DGAFAEFLRTYAPDEQQGHLEDSWTALVSGEGKEAKLIENGMLVTDVVGKQLQRQLSASSSDSGDQSRH 920 (1522)
T ss_pred eCCHHHHHhc-chhHHHHHHhhccccccccccccccccccccccccccccccccccccccchhhhhcccccccccccccc
Confidence 9999999875 56777776543221111000000 000000000000000000000000000 0000000000000000
Q ss_pred CCCCCCCcccCCCCCCCCC---CCcccCCcchhHhhhhhcC-ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 000984 678 LPSGQFADTALGEPAGPSQ---PTEEVAPEVPTRRLAYLNK-PEIPVILAGTIAAMANGVILPIYGLLISSVIETFFKPP 753 (1198)
Q Consensus 678 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 753 (1198)
..+............... .+++..+.+.+..+++|.+ .++...++.+++.++..++....++|++.|.+......
T Consensus 921 -~~~~~~~~~~~~~~~~~~~~~~e~~~~g~v~~~~y~~Y~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~w~~~~~~~~ 999 (1522)
T TIGR00957 921 -HGSSAELQKAEAKEETWKLMEADKAQTGQVELSVYWDYMKAIGLFITFLSIFLFVCNHVSALASNYWLSLWTDDPMVNG 999 (1522)
T ss_pred -ccccccccccccccchhhhHHHHHHhcCcccHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccC
Confidence 000000000000000000 0001112223333333332 23333333333333444445556677777776422110
Q ss_pred chhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccccccCCCChhhHHHHHHhhHHHH
Q 000984 754 HELKKDSRFWALIYLALGAGSFLLSPAQSYFFAVAGNKLIQRIRSMCFEKVIHMEVSWFDEPEHSSGAIGARLSADAASV 833 (1198)
Q Consensus 754 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~~l~~~ll~~p~~fFd~~~~~~G~i~~r~s~D~~~i 833 (1198)
. .....+|..+|++++++..++.++..+++...+.++++++|++++++++++|++||| ++++|+|+|||++|++.+
T Consensus 1000 ~--~~~~~~~~~iy~~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ff~--~~~~G~ilnR~s~Di~~i 1075 (1522)
T TIGR00957 1000 T--QNNTSLRLSVYGALGILQGFAVFGYSMAVSIGGIQASRVLHQDLLHNKLRSPMSFFE--RTPSGNLVNRFSKELDTV 1075 (1522)
T ss_pred C--CCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhHhc--cCChHHHHHHHHHHHHHH
Confidence 0 111234566788888888888888889999999999999999999999999999999 599999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhchhH
Q 000984 834 RALVGDALARIVQNISTAAAGLIIAFTASWQLALIILVMLPLIGVSGYTQMKFMKGFSADAKMKYEEASQVANDAVGSIR 913 (1198)
Q Consensus 834 ~~~l~~~l~~~i~~~~~~i~~li~~~~~~~~l~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~ 913 (1198)
|..++..+..++..++.+++.++++++.+|++++++++++++++++..++.+..+...+......+...+++.|+++|++
T Consensus 1076 d~~l~~~~~~~~~~~~~~i~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~s~l~~~~~E~l~Gi~ 1155 (1522)
T TIGR00957 1076 DSMIPPVIKMFMGSLFNVIGALIVILLATPIAAVIIPPLGLLYFFVQRFYVASSRQLKRLESVSRSPVYSHFNETLLGVS 1155 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCCcH
Confidence 99999999999999999999999988888877666555544444443333333344344444556677899999999999
Q ss_pred HHHHhcchHHHHHHHHHHhhhHHHHhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH-hcCCcCHHHHHHHHHHHHHH
Q 000984 914 TVASFCAEEKVMQLYKKKCEAPMKTGIRQGMVSGGGFGASFFLLFAFYAASFYAGARLV-EDGKATFSDVFKVFFSLTMT 992 (1198)
Q Consensus 914 tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~-~~g~~t~g~l~~~~~~~~~~ 992 (1198)
|||+|++|+++.+++.+..+...+..+.......+......++.. +++++.+...+ ..|.++.|.+.+++.+...+
T Consensus 1156 tIraf~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~v~~~~~~~~g~l~~~l~~~~~~ 1232 (1522)
T TIGR00957 1156 VIRAFEEQERFIHQSDLKVDENQKAYYPSIVANRWLAVRLECVGN---CIVLFAALFAVISRHSLSAGLVGLSVSYSLQV 1232 (1522)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Confidence 999999999999999999998888766554444333333222222 23333444444 35789999999999999999
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHhcCCCCCCCCCCC--CCcccCCcccEEEeeeeEECCCCCCccccccceEEeeC
Q 000984 993 AIGISQSSSFSSDSNKAKSAAASIFAIIDRESKIDPSDES--GTILEDVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRA 1070 (1198)
Q Consensus 993 ~~~l~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~--~~~~~~~~G~I~f~nVsf~Y~~~~~~~vL~~is~~I~~ 1070 (1198)
..++..+......++.++.+++|+.++++.+++.+...+. .+..++.+|+|+|+||+|+|+++ .++||+||||+|+|
T Consensus 1233 ~~~l~~l~~~~~~~e~~~~s~eRi~~~~~~~~e~~~~~~~~~~~~~wp~~g~I~f~nVsf~Y~~~-~~~vL~~is~~I~~ 1311 (1522)
T TIGR00957 1233 TFYLNWLVRMSSEMETNIVAVERLKEYSETEKEAPWQIQETAPPSGWPPRGRVEFRNYCLRYRED-LDLVLRHINVTIHG 1311 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccccccCCCCCCCCCCCCcEEEEEEEEEeCCC-CcccccceeEEEcC
Confidence 9999999999999999999999999999877654311111 11123467899999999999754 24799999999999
Q ss_pred CCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHhhcceeccccccccccHHHHHhcCCCCCCCHH
Q 000984 1071 GKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEA 1150 (1198)
Q Consensus 1071 GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~~i~l~~LR~~IsiV~Qdp~LF~gTIreNI~~g~~~~~tde 1150 (1198)
|||||||||||||||||+++|+|||||++|+|+|||+||+++++++||++|++|||||+||+|||||||++. +++|||
T Consensus 1312 GekiaIVGrTGsGKSTL~~lL~rl~~~~~G~I~IdG~dI~~i~~~~LR~~i~iVpQdp~LF~gTIr~NLdp~--~~~sde 1389 (1522)
T TIGR00957 1312 GEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGLNIAKIGLHDLRFKITIIPQDPVLFSGSLRMNLDPF--SQYSDE 1389 (1522)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCccCCCCeEEECCEEccccCHHHHHhcCeEECCCCcccCccHHHHcCcc--cCCCHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999854 269999
Q ss_pred HHHHHHHHcchHHHHHhccccccceee
Q 000984 1151 EIQAASEMANAHKFICSLQQVRTSRLL 1177 (1198)
Q Consensus 1151 ei~~Al~~A~l~dfI~~LP~g~dt~v~ 1177 (1198)
|||+|+++|+++|||.+||+||||+|.
T Consensus 1390 ei~~al~~a~l~~~I~~lp~GLdt~v~ 1416 (1522)
T TIGR00957 1390 EVWWALELAHLKTFVSALPDKLDHECA 1416 (1522)
T ss_pred HHHHHHHHcCcHHHHhhCccCCCceec
Confidence 999999999999999999999999973
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. |
| >PTZ00243 ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-119 Score=1197.88 Aligned_cols=995 Identities=17% Similarity=0.199 Sum_probs=720.4
Q ss_pred HHHHHHHHH----HHHHHHHHhCChhhhhc-cCCcchHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 000984 131 GERQATRIR----GLYLKTILRQDVAFFDN-ETNTGEVVGRMSGDTVLIQDAMGEKVGKFLQLMATFLGGFLIAFIKGWL 205 (1198)
Q Consensus 131 ~~~~~~~lr----~~~~~~ll~~~~~~f~~-~~~~G~i~~r~s~D~~~i~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~ 205 (1198)
..+.+.++| ..+++++++.+...+.. ..++|+++|++++|++++.+.+......+...+..+++.+++..+++|
T Consensus 309 ~~r~~~~~r~~L~~~if~K~l~ls~~~~~~~~~~~G~i~nl~s~Dv~~i~~~~~~~~~l~~~Pl~li~~~~lL~~~lG~- 387 (1560)
T PTZ00243 309 SIRCGLQYRSALNALIFEKCFTISSKSLAQPDMNTGRIINMMSTDVERINSFMQYCMYLWSSPMVLLLSILLLSRLVGW- 387 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCChhhhCCCCCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH-
Confidence 345555555 55667777766655531 136899999999999999999866554444434333444455555565
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHH
Q 000984 206 LTLVMLSSIPLLAMSGGVMAIMISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYKSGVQEGL 285 (1198)
Q Consensus 206 l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 285 (1198)
.+++.++++++++.+..++.+...+.+++..+..+++.+.++|.++|||+||+++||+.+.+++.+.++++.+...+...
T Consensus 388 ~al~gv~vl~v~~pl~~~~~k~~~~~~~~~~~~~D~Ri~~~~E~l~gIr~IK~~~wE~~f~~ri~~~R~~El~~l~~~~~ 467 (1560)
T PTZ00243 388 CALMAVAVLLVTLPLNGAIMKHQMAARRKIAKAADARVKATNEFFSGIRIAKFMAWEPCFVANIEDKRARELRYLRDVQL 467 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666667777777888888888888888999999999999999999999999999999999999999988888766666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC
Q 000984 286 AAGIGLGMVMLIVFCSYALSVWYGGKLILEEGYNGGQVVNVMVAVLTGSMSLGEASPCLSAFGAGQAAAFKMFETINRKP 365 (1198)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 365 (1198)
...+...+......+. ..+.++.+.+..+.++++.+|+.+..+-....++..++..+..+..+.++..|+.+++..++
T Consensus 468 ~~~~~~~~~~~~p~l~--~~~~f~~y~~~g~~Lt~~~vft~laL~~~L~~Pl~~lp~~~~~~~~a~vS~~RI~~fL~~~e 545 (1560)
T PTZ00243 468 ARVATSFVNNATPTLM--IAVVFTVYYLLGHELTPEVVFPTIALLGVLRMPFFMIPWVFTTVLQFLVSIKRISTFLECDN 545 (1560)
T ss_pred HHHHHHHHHHHHHHHH--HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcc
Confidence 6554443332222222 22234556667788999999998877777777888888889999999999999999997543
Q ss_pred CCC----c-cC------------C------C-------Cc--c-------------------------cCCCcccEEEEe
Q 000984 366 EID----A-YD------------T------K-------GK--I-------------------------LDDIRGDIELRD 388 (1198)
Q Consensus 366 ~~~----~-~~------------~------~-------~~--~-------------------------~~~~~g~i~~~~ 388 (1198)
... + .+ . + +. + .....+.+.++|
T Consensus 546 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 625 (1560)
T PTZ00243 546 ATCSTVQDMEEYWREQREHSTACQLAAVLENVDVTAFVPVKLPRAPKVKTSLLSRALRMLCCEQCRPTKRHPSPSVVVED 625 (1560)
T ss_pred ccccccccchhhcccccccccccccccccccccccccccccccccccccccccccchhhccccccccccccccccccccc
Confidence 100 0 00 0 0 00 0 000113467788
Q ss_pred EEEEcCCC-------------------------------------CCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHH
Q 000984 389 VYFSYPAR-------------------------------------PNEQIFSGFSISISSGTTAALVGQSGSGKSTVISL 431 (1198)
Q Consensus 389 v~~~y~~~-------------------------------------~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~ 431 (1198)
++|.|+.. .++++|+|+||+|++|++++|+||||||||||+++
T Consensus 626 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~isl~i~~G~~~~IiG~nGsGKSTLL~~ 705 (1560)
T PTZ00243 626 TDYGSPSSASRHIVEGGTGGGHEATPTSERSAKTPKMKTDDFFELEPKVLLRDVSVSVPRGKLTVVLGATGSGKSTLLQS 705 (1560)
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccCCceeEeeeEEEECCCCEEEEECCCCCcHHHHHHH
Confidence 87765420 12458999999999999999999999999999999
Q ss_pred HhccCCCCCCeEEECCeecCCcCHHHHhcceEEEcCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCC
Q 000984 432 IERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQG 511 (1198)
Q Consensus 432 l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g 511 (1198)
|+|+++|++|+|.+++ +|+||||+||+|++||+|||.|+.+ .+.+++.++++.|+++++++.+|+|
T Consensus 706 i~G~~~~~~G~i~~~~-------------~i~yv~Q~~~l~~~Tv~enI~~~~~-~~~~~~~~~~~~~~l~~~l~~l~~g 771 (1560)
T PTZ00243 706 LLSQFEISEGRVWAER-------------SIAYVPQQAWIMNATVRGNILFFDE-EDAARLADAVRVSQLEADLAQLGGG 771 (1560)
T ss_pred HhcCCCCCCcEEEECC-------------eEEEEeCCCccCCCcHHHHHHcCCh-hhHHHHHHHHHHhhhHHHHHHhhcc
Confidence 9999999999998753 7999999999999999999999765 4567788899999999999999999
Q ss_pred ccchhcCCCCCCChHHHHHHhHHHhhccCCCEEEEeCCCCCCCHHhHHHHH-HHHHHHhCCCeEEEEecCcchhhccCEE
Q 000984 512 IDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQ-EALDRIMVNRTTVIVAHRLSTVRNADMI 590 (1198)
Q Consensus 512 ~~t~v~~~g~~lSgGqkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~-~~i~~~~~~~t~i~itH~~~~~~~~d~i 590 (1198)
++|.+|++|.+|||||||||+||||+|++|+|||||||||+||+++.+.+. +++....+++|+|+|||+++.+..||+|
T Consensus 772 ~~t~i~~~g~~LSGGQkqRvaLARAl~~~p~illLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~~~~ad~i 851 (1560)
T PTZ00243 772 LETEIGEKGVNLSGGQKARVSLARAVYANRDVYLLDDPLSALDAHVGERVVEECFLGALAGKTRVLATHQVHVVPRADYV 851 (1560)
T ss_pred chHHhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHHHHhCCEE
Confidence 999999999999999999999999999999999999999999999877664 5565566789999999999999999999
Q ss_pred EEEeCCEEEEecChhhHhcCCCchhHHHHHHHhhccccccccccccccchhhhhhhcccccccccccccCCCCCCCCCCc
Q 000984 591 AVIHRGKIVEKGTHSKLVEDPEGAYSQLIRLQEANKESEQTIDGQRKSEISMESLRHSSHRMSLRRSISRGSSIGNSSRH 670 (1198)
Q Consensus 591 ~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 670 (1198)
++|++|++++.|+++++++. +.|..+........+..+ ..... +. +........ ........ ..
T Consensus 852 i~l~~G~i~~~G~~~~l~~~--~~~~~~~~~~~~~~~~~~-~~~~~--~~--~~~~~~~~~--~~~~~~~~-~~------ 915 (1560)
T PTZ00243 852 VALGDGRVEFSGSSADFMRT--SLYATLAAELKENKDSKE-GDADA--EV--AEVDAAPGG--AVDHEPPV-AK------ 915 (1560)
T ss_pred EEEECCEEEEecCHHHHHhC--hHHHHHHHhhcccccccc-ccccc--cc--ccccccccc--cccccccc-cc------
Confidence 99999999999999999864 456666543221111000 00000 00 000000000 00000000 00
Q ss_pred ccccccCCCCCCCCcccCCCCCCCCCCCcccCCcchhHhhhhhcCC-h-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000984 671 SISVSFGLPSGQFADTALGEPAGPSQPTEEVAPEVPTRRLAYLNKP-E-IPVILAGTIAAMANGVILPIYGLLISSVIET 748 (1198)
Q Consensus 671 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 748 (1198)
+. .....................+++..+.+.++.+..|.+. + +...+..+++.++..++.....+|++.|.+.
T Consensus 916 --~~--~~~~~~~~~~~~~~~~~l~~~e~~~~g~v~~~~y~~Y~~~~g~~~~~~~~l~~~~~~~~~~~~~~~wl~~w~~~ 991 (1560)
T PTZ00243 916 --QE--GNAEGGDGAALDAAAGRLMTREEKASGSVPWSTYVAYLRFCGGLHAAGFVLATFAVTELVTVSSGVWLSMWSTR 991 (1560)
T ss_pred --cc--cccccccccccccccchhhhHHHHhcCcccHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 00 0000000000000000000000111222344433333322 1 1111111122222223333344455554432
Q ss_pred hcCCCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccccccCCCChhhHHHHHHh
Q 000984 749 FFKPPHELKKDSRFWALIYLALGAGSFLLSPAQSYFFAVAGNKLIQRIRSMCFEKVIHMEVSWFDEPEHSSGAIGARLSA 828 (1198)
Q Consensus 749 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~~l~~~ll~~p~~fFd~~~~~~G~i~~r~s~ 828 (1198)
.. ......|+.+|+++.++..++.+++.+.....+.+..+++|++++++++++|++||| ++++|+|+|||++
T Consensus 992 ~~------~~~~~~~l~~y~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ffd--~~~~G~ilnR~s~ 1063 (1560)
T PTZ00243 992 SF------KLSAATYLYVYLGIVLLGTFSVPLRFFLSYEAMRRGSRNMHRDLLRSVSRGTMSFFD--TTPLGRILNRFSR 1063 (1560)
T ss_pred cc------CCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhcc--CCCccHHHHHHHh
Confidence 11 111234566677666666666677777777788888999999999999999999999 5899999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH----HHHHHHHHH
Q 000984 829 DAASVRALVGDALARIVQNISTAAAGLIIAFTASWQLALIILVMLPLIGVSGYTQMKFMKGFSADAK----MKYEEASQV 904 (1198)
Q Consensus 829 D~~~i~~~l~~~l~~~i~~~~~~i~~li~~~~~~~~l~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~ 904 (1198)
|++.++..++..+..++..++.+++.++++++.+|.+.+ +++|+.+++. .+.+++.+..++.+ ...+...++
T Consensus 1064 Di~~id~~l~~~l~~~~~~~~~~i~~li~~~~~~p~~~~---~~i~~~~~~~-~i~~~~~~~~r~~~r~~~~~~s~l~s~ 1139 (1560)
T PTZ00243 1064 DIDILDNTLPMSYLYLLQCLFSICSSILVTSASQPFVLV---ALVPCGYLYY-RLMQFYNSANREIRRIKSVAKSPVFTL 1139 (1560)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhcHHHHH
Confidence 999999999999999999999999999998888885433 3334333332 22233333344443 455667899
Q ss_pred HHHHhchhHHHHHhcchHHHHHHHHHHhhhHHHHhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH--HHhcCCcCHHHH
Q 000984 905 ANDAVGSIRTVASFCAEEKVMQLYKKKCEAPMKTGIRQGMVSGGGFGASFFLLFAFYAASFYAGAR--LVEDGKATFSDV 982 (1198)
Q Consensus 905 ~~E~l~gi~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~--l~~~g~~t~g~l 982 (1198)
+.|+++|+++||+|++++.+.++|.+..+.+.+..+.......+......++..+..+++.+++.. +...+.+++|.+
T Consensus 1140 ~~E~l~G~~tIraf~~e~~~~~~~~~~~d~~~~~~~~~~~~~~w~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~l 1219 (1560)
T PTZ00243 1140 LEEALQGSATITAYGKAHLVMQEALRRLDVVYSCSYLENVANRWLGVRVEFLSNIVVTVIALIGVIGTMLRATSQEIGLV 1219 (1560)
T ss_pred HHHHHcCHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHH
Confidence 999999999999999999999999999999988877665555444444444444443333334433 333455788988
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhcCCCCCC-CC-------------------------CCCCC--
Q 000984 983 FKVFFSLTMTAIGISQSSSFSSDSNKAKSAAASIFAIIDRESKID-PS-------------------------DESGT-- 1034 (1198)
Q Consensus 983 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~~-~~-------------------------~~~~~-- 1034 (1198)
..++.+...+..++..+......++..+.+++|+.++++..++.+ +. +...+
T Consensus 1220 ~~~l~~a~~l~~~l~~l~~~~~~le~~~~s~eRi~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1299 (1560)
T PTZ00243 1220 SLSLTMAMQTTATLNWLVRQVATVEADMNSVERLLYYTDEVPHEDMPELDEEVDALERRTGMAADVTGTVVIEPASPTSA 1299 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccccccccccccccccccccccccccccCCCccc
Confidence 888888889999999999999999999999999999996433211 00 00000
Q ss_pred -cccCCcccEEEeeeeEECCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCC
Q 000984 1035 -ILEDVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQ 1113 (1198)
Q Consensus 1035 -~~~~~~G~I~f~nVsf~Y~~~~~~~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~~i~ 1113 (1198)
+.++..|.|+|+||+|+|+++ .++||+||||+|+||||||||||||||||||+++|+|+|+|++|+|+|||+||++++
T Consensus 1300 ~~~~~~~G~I~f~nVsf~Y~~~-~~~vL~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~p~~G~I~IDG~di~~i~ 1378 (1560)
T PTZ00243 1300 APHPVQAGSLVFEGVQMRYREG-LPLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYG 1378 (1560)
T ss_pred CCCCCCCCeEEEEEEEEEeCCC-CCceeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccCC
Confidence 112246899999999999753 346999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHhhcceeccccccccccHHHHHhcCCCCCCCHHHHHHHHHHcchHHHHHhccccccceee
Q 000984 1114 LKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQVRTSRLL 1177 (1198)
Q Consensus 1114 l~~LR~~IsiV~Qdp~LF~gTIreNI~~g~~~~~tdeei~~Al~~A~l~dfI~~LP~g~dt~v~ 1177 (1198)
+++||++|++|||||+||+||||+||+++ +++||+|||+||++|+++|||.+||+||||.|.
T Consensus 1379 l~~LR~~I~iVpQdp~LF~gTIreNIdp~--~~~sdeeI~~Al~~a~l~~~I~~lp~Gldt~vg 1440 (1560)
T PTZ00243 1379 LRELRRQFSMIPQDPVLFDGTVRQNVDPF--LEASSAEVWAALELVGLRERVASESEGIDSRVL 1440 (1560)
T ss_pred HHHHHhcceEECCCCccccccHHHHhCcc--cCCCHHHHHHHHHHCCChHHHhhCccccccccc
Confidence 99999999999999999999999999875 379999999999999999999999999999874
|
|
| >TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-116 Score=1174.94 Aligned_cols=1009 Identities=17% Similarity=0.202 Sum_probs=703.1
Q ss_pred HHHHHHHHHH----HHHHHHhCChhhhhccCCcchHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 000984 132 ERQATRIRGL----YLKTILRQDVAFFDNETNTGEVVGRMSGDTVLIQDAMGEKVGKFLQLMATFLGGFLIAFIKGWLLT 207 (1198)
Q Consensus 132 ~~~~~~lr~~----~~~~ll~~~~~~f~~~~~~G~i~~r~s~D~~~i~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~l~ 207 (1198)
.+.+.++|.. +++++++.+...+++ .++|+++|++++|++++.+.+......|...+..+++.+++...++| .+
T Consensus 147 ~~~~~~~r~~L~~~iy~K~L~l~~~~~~~-~~~g~i~nl~s~Dv~~i~~~~~~~~~~~~~pi~i~~~~~lL~~~~G~-~~ 224 (1490)
T TIGR01271 147 HHLGMQMRIALFSLIYKKTLKLSSRVLDK-ISTGQLVSLLSNNLNKFDEGLALAHFVWIAPLQVILLMGLIWELLEV-NG 224 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCHHHhcC-CCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH
Confidence 3455555554 589999999888876 48999999999999999998766554444444344444444555555 45
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000984 208 LVMLSSIPLLAMSGGVMAIMISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYKSGVQEGLAA 287 (1198)
Q Consensus 208 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (1198)
++.++++++++++..++.+.+.+..++.++..+++.+.++|.++|||+||+|+||+.+.+++.+.++++.+...+.....
T Consensus 225 l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~E~l~~ik~IK~~~~E~~~~~~i~~~R~~El~~~~~~~~~~ 304 (1490)
T TIGR01271 225 FCGLGFLILLALFQACLGQKMMPYRDKRAGKISERLAITSEIIENIQSVKAYCWEEAMEKIIKNIRQDELKLTRKIAYLR 304 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66777778888888889999999999999999999999999999999999999999999999999998888776665554
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHccCCC
Q 000984 288 GIGLGMVMLIVFCSYALSVWYGGKLILEEGYNGGQVVNVMVAVLTGSMSLG-EASPCLSAFGAGQAAAFKMFETINRKPE 366 (1198)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~l~~~~~l~-~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 366 (1198)
.+...+..... ..+..+.++.+.+. +..+.+.+|+++..+.....++. .++..+..+..+.++..|+.+++..++.
T Consensus 305 ~~~~~~~~~~~--~~~~~~~f~~y~~~-~~~~~~~~ft~lal~~lL~~~l~~~lp~~~~~~~~a~~s~~RI~~fL~~~e~ 381 (1490)
T TIGR01271 305 YFYSSAFFFSG--FFVVFLSVVPYALI-KGIILRRIFTTISYCIVLRMTVTRQFPGAIQTWYDSLGAITKIQDFLCKEEY 381 (1490)
T ss_pred HHHHHHHHHHH--HHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccc
Confidence 33322221111 12223334444443 33577777776655544444543 4555678888899999999999976432
Q ss_pred CCccCCCCcccCCCcccEEEEeEEEEcCCCC-------------------------------CCccccceeEEEeCCCEE
Q 000984 367 IDAYDTKGKILDDIRGDIELRDVYFSYPARP-------------------------------NEQIFSGFSISISSGTTA 415 (1198)
Q Consensus 367 ~~~~~~~~~~~~~~~g~i~~~~v~~~y~~~~-------------------------------~~~~l~~i~l~i~~g~~~ 415 (1198)
+... . ......|+++|++|.|+... .+++|+|+||+|++||++
T Consensus 382 -~~~~---~--~~~~~~i~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~i~l~i~~G~~~ 455 (1490)
T TIGR01271 382 -KTLE---Y--NLTTTEVEMVNVTASWDEGIGELFEKIKQNNKARKQPNGDDGLFFSNFSLYVTPVLKNISFKLEKGQLL 455 (1490)
T ss_pred -cccc---c--cCCCCceEEecceEecCCccccccccccccccccccccccccccccccccccCcceeeeEEEECCCCEE
Confidence 1111 0 01123599999999995310 136899999999999999
Q ss_pred EEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcceEEEcCCCCCCcccHHHHHhcCCCCCCHHHHHHH
Q 000984 416 ALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVA 495 (1198)
Q Consensus 416 ~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~Ni~~~~~~~~~~~~~~~ 495 (1198)
+|+||+|||||||+++|+|+++|.+|+|.++| +|+||+|+||+|++||+|||.||.+ ++++++.++
T Consensus 456 ~I~G~~GsGKSTLl~~l~G~~~~~~G~i~~~g-------------~iayv~Q~~~l~~~Ti~eNI~~g~~-~~~~~~~~~ 521 (1490)
T TIGR01271 456 AVAGSTGSGKSSLLMMIMGELEPSEGKIKHSG-------------RISFSPQTSWIMPGTIKDNIIFGLS-YDEYRYTSV 521 (1490)
T ss_pred EEECCCCCCHHHHHHHHhCCCCCCCceEEECC-------------EEEEEeCCCccCCccHHHHHHhccc-cchHHHHHH
Confidence 99999999999999999999999999999998 6999999999999999999999865 566778888
Q ss_pred HHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhhccCCCEEEEeCCCCCCCHHhHHHHHH-HHHHHhCCCeE
Q 000984 496 TELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQE-ALDRIMVNRTT 574 (1198)
Q Consensus 496 ~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~-~i~~~~~~~t~ 574 (1198)
++.|++.+++..+|+|++|.+|++|.+|||||||||+||||+|++|+|||||||||+||+++++.+.+ ++.++.+++|+
T Consensus 522 ~~~~~L~~~l~~l~~g~~t~vg~~g~~LSgGqkqRi~lARAl~~~~~illLDep~saLD~~~~~~i~~~~l~~~~~~~tv 601 (1490)
T TIGR01271 522 IKACQLEEDIALFPEKDKTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFTHLDVVTEKEIFESCLCKLMSNKTR 601 (1490)
T ss_pred HHHHhHHHHHHhccccccccccCcCCCcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCeE
Confidence 99999999999999999999999999999999999999999999999999999999999999998876 57777789999
Q ss_pred EEEecCcchhhccCEEEEEeCCEEEEecChhhHhcCCCchhHHHHHHHhhcc----cc------c-------c-cc----
Q 000984 575 VIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVEDPEGAYSQLIRLQEANK----ES------E-------Q-TI---- 632 (1198)
Q Consensus 575 i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~~~~~----~~------~-------~-~~---- 632 (1198)
|+|||+++.+..||+|++|++|++++.|+++++.+. ++.|...+...+... +. + + ..
T Consensus 602 ilvtH~~~~~~~ad~ii~l~~g~i~~~g~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 680 (1490)
T TIGR01271 602 ILVTSKLEHLKKADKILLLHEGVCYFYGTFSELQAK-RPDFSSLLLGLEAFDNFSAERRNSILTETLRRVSIDGDSTVFS 680 (1490)
T ss_pred EEEeCChHHHHhCCEEEEEECCEEEEEcCHHHHHhc-ChHHHHHHhcccccccccccccccccccccccccccccccccc
Confidence 999999999999999999999999999999999875 445555542110000 00 0 0 00
Q ss_pred -cccccc---chhhhh-h-h-------cc-c------------------ccccccccc-------cCCCCCCC-CCCccc
Q 000984 633 -DGQRKS---EISMES-L-R-------HS-S------------------HRMSLRRSI-------SRGSSIGN-SSRHSI 672 (1198)
Q Consensus 633 -~~~~~~---~~~~~~-~-~-------~~-~------------------~~~~~~~~~-------~~~~~~~~-~~~~~~ 672 (1198)
++.... .+..+. . + .. + ......+.. ...+..+. ......
T Consensus 681 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 760 (1490)
T TIGR01271 681 GPETIKQSFKQPPPEFAEKRKQSIILNPIASARKFSFVQMGPQKAQATTIEDAVREPSERKFSLVPEDEQGEESLPRGNQ 760 (1490)
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccchhcccccccccccccccccccccccccc
Confidence 000000 000000 0 0 00 0 000000000 00000000 000000
Q ss_pred ---------cccc---CCCCC----------------------C-----CCcc--cCC-CCC------CC---CC-----
Q 000984 673 ---------SVSF---GLPSG----------------------Q-----FADT--ALG-EPA------GP---SQ----- 696 (1198)
Q Consensus 673 ---------~~~~---~~~~~----------------------~-----~~~~--~~~-~~~------~~---~~----- 696 (1198)
.... ....+ . .... ... ... .+ ..
T Consensus 761 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 840 (1490)
T TIGR01271 761 YHHGLQHQAQRRQSVLQLMTHSNRGENRREQLQTSFRKKSSITQQNELASELDIYSRRLSKDSVYEISEEINEEDLKECF 840 (1490)
T ss_pred cccccccccccccchhhcccccccccccccccccccccccccccccccccccccccccccccccccccccchhhhhhhhh
Confidence 0000 00000 0 0000 000 000 00 00
Q ss_pred C--CcccCCcchhHhhhhhcCC-h-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--c---CCCch-h---------h
Q 000984 697 P--TEEVAPEVPTRRLAYLNKP-E-IPVILAGTIAAMANGVILPIYGLLISSVIETF--F---KPPHE-L---------K 757 (1198)
Q Consensus 697 ~--~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~---~~~~~-~---------~ 757 (1198)
. ++...+.+.++.+++|.+. + +..+++.+++.++..++..+..+|+..|.... + ..... . .
T Consensus 841 ~~~e~~~~g~v~~~vY~~Y~~~~g~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 920 (1490)
T TIGR01271 841 ADERENVFETTTWNTYLRYITTNRNLVFVLIFCLVIFLAEVAASLLGLWLITDNPSAPNYVDQQHANASSPDVQKPVIIT 920 (1490)
T ss_pred hHHHHhhcCcccHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhHHHHhcccccccccccccccCCCcccccccccc
Confidence 0 0001112333334333322 1 22222222223333334444445554443210 0 00000 0 0
Q ss_pred hhhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccccccCCCChhhHHHHHHhhHHHHHHH
Q 000984 758 KDSRFW-ALIYLALGAGSFLLSPAQSYFFAVAGNKLIQRIRSMCFEKVIHMEVSWFDEPEHSSGAIGARLSADAASVRAL 836 (1198)
Q Consensus 758 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~~l~~~ll~~p~~fFd~~~~~~G~i~~r~s~D~~~i~~~ 836 (1198)
....+| +.+|++++++..++.+++.+++...+.+++.++|.+++++++++|++||+ .+|+|+++|||++|++.+|+.
T Consensus 921 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ff~--~~~~G~ilnRfs~Di~~id~~ 998 (1490)
T TIGR01271 921 PTSAYYIFYIYVGTADSVLALGFFRGLPLVHTLLTVSKRLHEQMLHSVLQAPMAVLN--TMKAGRILNRFTKDMAIIDDM 998 (1490)
T ss_pred CcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhC--CCChhHHHHHHHHHHHHHHHH
Confidence 011222 34455555556677788889999999999999999999999999999999 599999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhchhHHHH
Q 000984 837 VGDALARIVQNISTAAAGLIIAFTASWQLALIILVMLPLIGVSGYTQMKFMKGFSADAKMKYEEASQVANDAVGSIRTVA 916 (1198)
Q Consensus 837 l~~~l~~~i~~~~~~i~~li~~~~~~~~l~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIr 916 (1198)
++..+..++..++.+++.++++++++|++++++++++.+++++..++.+..+...+......+...+++.|+++|+.|||
T Consensus 999 l~~~~~~~~~~~~~~i~~l~~i~~~~p~l~l~~~~l~~~~~~~~~~~~~~~r~l~~~~~~~~s~l~~~~~Etl~Gl~tIr 1078 (1490)
T TIGR01271 999 LPLTLFDFIQLTLIVLGAIFVVSVLQPYIFIAAIPVAVIFIMLRAYFLRTSQQLKQLESEARSPIFSHLITSLKGLWTIR 1078 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCHHHHH
Confidence 99999999999999999999999999876554333322222222222222233333334445667899999999999999
Q ss_pred HhcchHHHHHHHHHHhhhHHHHhHHHHHHHhhHHHHHHHHHHHHH--HHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHH
Q 000984 917 SFCAEEKVMQLYKKKCEAPMKTGIRQGMVSGGGFGASFFLLFAFY--AASFYAGARLVEDGKATFSDVFKVFFSLTMTAI 994 (1198)
Q Consensus 917 af~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~g~~l~~~g~~t~g~l~~~~~~~~~~~~ 994 (1198)
+|++++++.++|.+..+...+..+.......+......++..+.. +++++++.. .++.|.+..++.+...+..
T Consensus 1079 af~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~i~~~~~~~~~~l~~~~~-----~~~~g~~g~~l~~~~~l~~ 1153 (1490)
T TIGR01271 1079 AFGRQSYFETLFHKALNLHTANWFLYLSTLRWFQMRIDIIFVFFFIAVTFIAIGTN-----QDGEGEVGIILTLAMNILS 1153 (1490)
T ss_pred HhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----cCCccHHHHHHHHHHHHHH
Confidence 999999999999999987665544333322222222222111111 111222222 2233444444555566667
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHhcCCCCCCCCCCC----------------CCcccCCcccEEEeeeeEECCCCCCc
Q 000984 995 GISQSSSFSSDSNKAKSAAASIFAIIDRESKIDPSDES----------------GTILEDVKGEIELHHVSFKYPSRPDV 1058 (1198)
Q Consensus 995 ~l~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~----------------~~~~~~~~G~I~f~nVsf~Y~~~~~~ 1058 (1198)
++..+......++..+.+++|+.++++.+++.....+. .++.++..|+|+|+||+|+|+++ .+
T Consensus 1154 ~l~~l~~~~~~le~~~~s~eRi~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~wp~~g~I~f~nVs~~Y~~~-~~ 1232 (1490)
T TIGR01271 1154 TLQWAVNSSIDVDGLMRSVSRVFKFIDLPQEEPRPSGGGGKYQLSTVLVIENPHAQKCWPSGGQMDVQGLTAKYTEA-GR 1232 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccccccccccccCCCCCCCCCCCeEEEEEEEEEeCCC-Cc
Confidence 77778888889999999999999999876653211100 01123457899999999999753 45
Q ss_pred cccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHhhcceeccccccccccHHHH
Q 000984 1059 QVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRAN 1138 (1198)
Q Consensus 1059 ~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~~i~l~~LR~~IsiV~Qdp~LF~gTIreN 1138 (1198)
+||+||||+|+||||||||||||||||||+++|+|+|+ .+|+|+|||+||+++++++||++|++|||||+||+||||+|
T Consensus 1233 ~vL~~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl~~-~~G~I~IdG~di~~i~~~~lR~~is~IpQdp~LF~GTIR~N 1311 (1490)
T TIGR01271 1233 AVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLS-TEGEIQIDGVSWNSVTLQTWRKAFGVIPQKVFIFSGTFRKN 1311 (1490)
T ss_pred ceeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEcccCCHHHHHhceEEEeCCCccCccCHHHH
Confidence 79999999999999999999999999999999999998 79999999999999999999999999999999999999999
Q ss_pred HhcCCCCCCCHHHHHHHHHHcchHHHHHhccccccceee
Q 000984 1139 IAYGKGGDATEAEIQAASEMANAHKFICSLQQVRTSRLL 1177 (1198)
Q Consensus 1139 I~~g~~~~~tdeei~~Al~~A~l~dfI~~LP~g~dt~v~ 1177 (1198)
|++. .+++|+|+|+|++.++++++|.++|+||||.|-
T Consensus 1312 Ldp~--~~~tdeei~~aL~~~~L~~~i~~lp~GLdt~v~ 1348 (1490)
T TIGR01271 1312 LDPY--EQWSDEEIWKVAEEVGLKSVIEQFPDKLDFVLV 1348 (1490)
T ss_pred hCcc--cCCCHHHHHHHHHHCCCHHHHHhCccccccccc
Confidence 9875 368999999999999999999999999999884
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. |
| >KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-100 Score=888.74 Aligned_cols=576 Identities=39% Similarity=0.641 Sum_probs=527.0
Q ss_pred chHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000984 44 VPFYKLFTFADSADTALMIIGSIGAIGNGLCLPLMTLLFGDLINTFGDNQNNSETVDKVSKVAVKFVYLGIGSGIASFLQ 123 (1198)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 123 (1198)
..+++++.|+++..+.+ ..+.++.++......+.|.+.|+++|.+....+. .......+..+..+.++.+++.+++
T Consensus 133 ~~~~rl~~l~~~~~~~l-~~a~~~l~vss~~~~~iP~~~G~~id~~~~~~~~---~~~~~~~~~~l~~l~~~~a~~~~~r 208 (716)
T KOG0058|consen 133 TLLKRLLGLLKPEWKWL-VAAFVLLLVSSLINMFIPYYLGKLIDTISEGDDS---ADALKRACTILLGLFLIGALANAIR 208 (716)
T ss_pred hHHHHHHHHhchhHHHH-HHHHHHHHHHHhhcchhhHHHHHHHHHHHhccch---HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788999987754433 3444444444455666777899999987651111 2223334556667778888999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhccCCcchHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000984 124 VTCWMITGERQATRIRGLYLKTILRQDVAFFDNETNTGEVVGRMSGDTVLIQDAMGEKVGKFLQLMATFLGGFLIAFIKG 203 (1198)
Q Consensus 124 ~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~f~~~~~~G~i~~r~s~D~~~i~~~~~~~~~~~~~~~~~~i~~~i~~~~~~ 203 (1198)
.+++.+.+.++..++|.++|+++++++++|||. +.+|++++|++.|++.+.+.++..+...+..+...++++.+++.++
T Consensus 209 ~~~~~~a~~rv~~rlR~~lF~sil~QdiaFFD~-nktGeL~SRLtsD~~~vs~svs~nls~~lR~~~~~~g~~~~M~~~S 287 (716)
T KOG0058|consen 209 GGLLQYAGERVVARLRTDLFRSLLRQDIAFFDE-NKTGELISRLTSDTQIVSNSVSQNLSDGLRNLVQGFGGLGFMFSLS 287 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcc-CCccHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhh
Confidence 999999999999999999999999999999997 4899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHH
Q 000984 204 WLLTLVMLSSIPLLAMSGGVMAIMISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYKSGVQE 283 (1198)
Q Consensus 204 ~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~ 283 (1198)
|.++++.++.+|++.++..+++++.++..++.++..++.++...|.+++|||||+|+.|+.+.++|.+..++..+...+.
T Consensus 288 ~~Ltlv~~i~~P~v~~~~~~yG~~~rklS~~~Q~a~A~a~~vaeE~ls~~rTVRsfa~E~~E~~ry~~~l~~~~~i~~k~ 367 (716)
T KOG0058|consen 288 WRLTLVTLIVVPIVALVAKIYGKYLRKLSKQTQDALARANQVAEEVLSAMRTVRSFAAEEQEVKRYNKKLREVLKLSKKE 367 (716)
T ss_pred HHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Q 000984 284 GLAAGIGLGMVMLIVFCSYALSVWYGGKLILEEGYNGGQVVNVMVAVLTGSMSLGEASPCLSAFGAGQAAAFKMFETINR 363 (1198)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~ 363 (1198)
....+.......+...+..+.++++|++++..+.++.|.+.+++++......++..+...+..++++..|++|+||++++
T Consensus 368 a~a~~~f~~~~~~~~~~~~~siL~~Gg~Lv~~g~mt~g~L~sFllY~~~~g~sl~~ls~~ys~lmkgvGAs~rvFel~dr 447 (716)
T KOG0058|consen 368 AVAYGIFFGSTNLLGNLAVLSILFYGGHLVLTGSLTSGALSSFLLYQVQLGSSLSGLSSFYSELMKGVGASERVFELMDR 447 (716)
T ss_pred HHHhhHhHhHHHHHHhHHHHHHHHhccchhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhcc
Confidence 88888888888888888889999999999999999999999988888877778888888999999999999999999999
Q ss_pred CCCCCccCCCCcccCCCcccEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeE
Q 000984 364 KPEIDAYDTKGKILDDIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 443 (1198)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~g~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i 443 (1198)
+|..+... ...+...+|.|+|+||+|+||++++.++|+|+||+|+|||.||+|||||+||||++++|.++|+|++|+|
T Consensus 448 ~P~i~~~G--~~~p~~~~G~IeF~~VsFaYP~Rp~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~PtsG~I 525 (716)
T KOG0058|consen 448 KPRIPLTG--TLAPDHLQGVIEFEDVSFAYPTRPDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPTSGRI 525 (716)
T ss_pred CCCCCCCC--ccccccccceEEEEEeeeecCCCCCchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeE
Confidence 98876542 1122256899999999999999999999999999999999999999999999999999999999999999
Q ss_pred EECCeecCCcCHHHHhcceEEEcCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCC
Q 000984 444 LIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQL 523 (1198)
Q Consensus 444 ~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~l 523 (1198)
.+||+||++++.++||++||+|.|||.||++||+|||.||.++.++|+++.|+++++.|+||..+|+||+|.|||+|.+|
T Consensus 526 llDG~~i~~~~~~~lr~~Ig~V~QEPvLFs~sI~eNI~YG~~~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~qL 605 (716)
T KOG0058|consen 526 LLDGVPISDINHKYLRRKIGLVGQEPVLFSGSIRENIAYGLDNATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKGSQL 605 (716)
T ss_pred EECCeehhhcCHHHHHHHeeeeeccceeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHhHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhCCCeEEEEecCcchhhccCEEEEEeCCEEEEecC
Q 000984 524 SGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGT 603 (1198)
Q Consensus 524 SgGqkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~ 603 (1198)
||||||||||||||++||.||||||+|||||+++|..+++++.+..+++|||+|+||++++++||+|+|+++|+|+|.|+
T Consensus 606 SGGQKQRIAIARALlr~P~VLILDEATSALDaeSE~lVq~aL~~~~~~rTVlvIAHRLSTV~~Ad~Ivvi~~G~V~E~G~ 685 (716)
T KOG0058|consen 606 SGGQKQRIAIARALLRNPRVLILDEATSALDAESEYLVQEALDRLMQGRTVLVIAHRLSTVRHADQIVVIDKGRVVEMGT 685 (716)
T ss_pred cchHHHHHHHHHHHhcCCCEEEEechhhhcchhhHHHHHHHHHHhhcCCeEEEEehhhhHhhhccEEEEEcCCeEEeccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHhcCCCchhHHHHHHHhhcc
Q 000984 604 HSKLVEDPEGAYSQLIRLQEANK 626 (1198)
Q Consensus 604 ~~~l~~~~~~~~~~~~~~~~~~~ 626 (1198)
|+||++++++.|+++++.|....
T Consensus 686 h~eLl~~~~gly~~Lv~~q~~~~ 708 (716)
T KOG0058|consen 686 HDELLSKPNGLYAKLVQRQLDSG 708 (716)
T ss_pred HHHHhhCcccHHHHHHHHhcccC
Confidence 99999998899999998775443
|
|
| >KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-96 Score=901.45 Aligned_cols=579 Identities=46% Similarity=0.781 Sum_probs=542.2
Q ss_pred ccchHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 000984 42 ESVPFYKLFTFADSADTALMIIGSIGAIGNGLCLPLMTLLFGDLINTFGDNQNNSETVDKVSKVAVKFVYLGIGSGIASF 121 (1198)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 121 (1198)
.+.++++++++..+ .|.+++++++++++.++..|++.+.++.++..+...+ .+........|+++++++|++.+++.+
T Consensus 648 ~~~s~~~i~k~~~p-e~~~l~lG~i~a~i~G~~~P~fa~~~s~~~~~f~~~~-~~~~~~~~~~~al~f~~l~~~~~i~~~ 725 (1228)
T KOG0055|consen 648 EKVSFWRIFKLNKP-EWPYLLLGSLGAAIRGATYPLFAYVFSQVLEAFYPPD-DDELKREVRAWALIFLGLGIVSGITNF 725 (1228)
T ss_pred ccccHHHHHHhccc-hhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCC-hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45679999988766 7888899999999999999999999999998876432 222223333478888899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhccCCcchHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000984 122 LQVTCWMITGERQATRIRGLYLKTILRQDVAFFDNETNTGEVVGRMSGDTVLIQDAMGEKVGKFLQLMATFLGGFLIAFI 201 (1198)
Q Consensus 122 ~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~f~~~~~~G~i~~r~s~D~~~i~~~~~~~~~~~~~~~~~~i~~~i~~~~ 201 (1198)
++++++.+.++++.+|+|..+|++++++++.|||...++|.+.+|+++|...++..+...+..+++.+..++.+++++|+
T Consensus 726 ~q~~~f~~~ge~Lt~R~R~~~F~~ll~qd~~wFD~~~nsg~l~~RLa~Da~~vr~~v~~rl~~vv~~~~~~~~~iiiaf~ 805 (1228)
T KOG0055|consen 726 LQHYFFGIAGEKLTKRLRSMMFRALLRQEVGWFDDPENSGALSSRLATDASNVRAAVGDRLSLVVQNIAAVIIGIIIAFI 805 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCCccchHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999997655699999999999999999999999999999999999999999
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcHHHHHHHHHHHHHHHHHHHH
Q 000984 202 KGWLLTLVMLSSIPLLAMSGGVMAIMISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYKSGV 281 (1198)
Q Consensus 202 ~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~ 281 (1198)
++|.+++++++..|++++......+.+.....+..+..++..+...|++.+||||++|+.|+++.+.|.+..++..+...
T Consensus 806 ~~W~lalv~la~~Pll~~~~~~~~~~~~~~~~~~~~~~~ea~~iA~eai~NIrTV~al~~e~~~~~~y~~~l~~p~~~~~ 885 (1228)
T KOG0055|consen 806 YGWRLALVVLATFPLLILSGYLQKKFLKGFSKDDKKAYEEASKIAIEAVSNIRTVAALCAEEKFMELYKEELEKPRKSSF 885 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000984 282 QEGLAAGIGLGMVMLIVFCSYALSVWYGGKLILEEGYNGGQVVNVMVAVLTGSMSLGEASPCLSAFGAGQAAAFKMFETI 361 (1198)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~ 361 (1198)
+..++.++.+++.+.+.++.+++.+|+|++++..+.+++..++.++..+......+++.....+.+..+..|+.++++.+
T Consensus 886 ~~~~i~gl~f~~sqs~~~~~~A~~f~~G~~Li~~g~~~~~~~~~vf~~l~~ta~~~~~~~s~~Pd~~ka~~Aa~~iF~i~ 965 (1228)
T KOG0055|consen 886 KRGLISGLGFGFSQSLLFFVYALSFWYGARLISNGEMTFEDVFRVFMALSFTAMALGQASSYAPDISKAKIAAGSIFEIL 965 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999888877778888888889999999999999999999
Q ss_pred ccCCCCCccCCCCcccCCCcccEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCC
Q 000984 362 NRKPEIDAYDTKGKILDDIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAG 441 (1198)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~g~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G 441 (1198)
+++|++++++..+...+..+|+|+++||+|+||++|+.++|+|+||+|++|+.+||||||||||||++.+|.|+|+|.+|
T Consensus 966 dr~~~i~~~~~~~~~~~~~~G~I~~~~V~F~YPsRP~~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeRfYdp~~G 1045 (1228)
T KOG0055|consen 966 DRKPTIDPDSTSGGKLPNVKGDIEFRNVSFAYPTRPDVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLERFYDPDAG 1045 (1228)
T ss_pred cCCCCCCCCCCCCCccccceeEEEEeeeEeeCCCCCCchhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHHHhcCCCCC
Confidence 99987766543333445678999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEECCeecCCcCHHHHhcceEEEcCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCC
Q 000984 442 EVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGT 521 (1198)
Q Consensus 442 ~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~ 521 (1198)
.|.|||.|++++++++||++||.|+|||.||++||||||+||.+..+.+++.+|++.+++|+||.+||+||||.|||+|.
T Consensus 1046 ~V~IDg~dik~lnl~~LR~~i~lVsQEP~LF~~TIrENI~YG~~~vs~~eIi~Aak~ANaH~FI~sLP~GyDT~vGerG~ 1125 (1228)
T KOG0055|consen 1046 KVKIDGVDIKDLNLKWLRKQIGLVSQEPVLFNGTIRENIAYGSEEVSEEEIIEAAKLANAHNFISSLPQGYDTRVGERGV 1125 (1228)
T ss_pred eEEECCcccccCCHHHHHHhcceeccCchhhcccHHHHHhccCCCCCHHHHHHHHHHhhhHHHHhcCcCcccCccCcccC
Confidence 99999999999999999999999999999999999999999966689999999999999999999999999999999999
Q ss_pred CCChHHHHHHhHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhCCCeEEEEecCcchhhccCEEEEEeCCEEEEe
Q 000984 522 QLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEK 601 (1198)
Q Consensus 522 ~lSgGqkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~ 601 (1198)
+||||||||||||||++|||+||||||+|||||.++|+.+|+++++...+||+|+||||++++++||.|.|+++|+|+|+
T Consensus 1126 QLSGGQKQRIAIARAilRnPkILLLDEATSALDseSErvVQeALd~a~~gRT~IvIAHRLSTIqnaD~I~Vi~~G~VvE~ 1205 (1228)
T KOG0055|consen 1126 QLSGGQKQRIAIARAILRNPKILLLDEATSALDSESERVVQEALDRAMEGRTTIVIAHRLSTIQNADVIAVLKNGKVVEQ 1205 (1228)
T ss_pred cCCchHHHHHHHHHHHHcCCCeeeeeccchhhhhhhHHHHHHHHHHhhcCCcEEEEecchhhhhcCCEEEEEECCEEEec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cChhhHhcCCCchhHHHHHHHh
Q 000984 602 GTHSKLVEDPEGAYSQLIRLQE 623 (1198)
Q Consensus 602 g~~~~l~~~~~~~~~~~~~~~~ 623 (1198)
|+|++|+++ +|.|.+|++.|.
T Consensus 1206 GtH~~L~~~-~G~Y~~Lv~~q~ 1226 (1228)
T KOG0055|consen 1206 GTHDELLAK-RGIYFRLVQLQS 1226 (1228)
T ss_pred ccHHHHHhC-CCchHHHhhhcc
Confidence 999999995 899999987653
|
|
| >COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-85 Score=798.57 Aligned_cols=550 Identities=32% Similarity=0.515 Sum_probs=497.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000984 61 MIIGSIGAIGNGLCLPLMTLLFGDLINTFGDNQNNSETVDKVSKVAVKFVYLGIGSGIASFLQVTCWMITGERQATRIRG 140 (1198)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lr~ 140 (1198)
+++..++..+.+++.|+ +...++|......+ .+.+...+++++..++..+++.+++.+...+.+.|....+-.
T Consensus 159 v~~~sl~l~i~~l~~p~---~~q~viD~Vl~~~~----~~tL~vl~ig~~~~~l~~~~l~~lr~~~~~~~~~rld~~l~~ 231 (709)
T COG2274 159 VLLASLLLQLLALATPL---FSQIVIDKVLPDAS----RSTLTVLAIGLLLAALFEALLRLLRTYLIAHLGKRLDLELSG 231 (709)
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHhhhccCc----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 44444555566666666 44556777654432 234445556667778888899999999999999999999999
Q ss_pred HHHHHHHhCChhhhhccCCcchHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 000984 141 LYLKTILRQDVAFFDNETNTGEVVGRMSGDTVLIQDAMGEKVGKFLQLMATFLGGFLIAFIKGWLLTLVMLSSIPLLAMS 220 (1198)
Q Consensus 141 ~~~~~ll~~~~~~f~~~~~~G~i~~r~s~D~~~i~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~l~l~~~~~~~~~~~~ 220 (1198)
.+++|++++|+.||+++ ++|++++|++ |.+.|++++.......+..+.+++..++++++++|.++++.++.+|++++.
T Consensus 232 ~~~~hll~Lpl~~f~~r-~~Ge~~sR~~-el~~Ir~flt~~~l~~iiD~~~~~i~l~vm~~ys~~L~li~l~~~~l~~l~ 309 (709)
T COG2274 232 RFFRHLLRLPLSYFEKR-SVGEIISRVR-ELEQIREFLTGSILTLIIDLLFALIFLAVMFLYSWKLTLIVLAAIPLNVLI 309 (709)
T ss_pred HHHHHHHcCcHHHccCC-ChhhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999975 9999999996 899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000984 221 GGVMAIMISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYKSGVQEGLAAGIGLGMVMLIVFC 300 (1198)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (1198)
..++.+..++..++..+..++..+.+.|+++|+++||+.+.|.++..+|++...+..+...+.............++..+
T Consensus 310 ~~~~~~~l~~~~~~~~~~~a~~~s~lvE~i~gi~tvK~~~~e~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 389 (709)
T COG2274 310 TLIFQPLLRRKTRKLIEESAEQQSFLVETIKGIETVKALAAEPRFRSQWDNRLAKQVNIGFKTEKLALILNTIKSLLQQL 389 (709)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999998888888877777777788888
Q ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCccCCCCcccCCC
Q 000984 301 SYALSVWYGGKLILEEGYNGGQVVNVMVAVLTGSMSLGEASPCLSAFGAGQAAAFKMFETINRKPEIDAYDTKGKILDDI 380 (1198)
Q Consensus 301 ~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 380 (1198)
+.++++|+|+.++.++.+|.|.++++.+..-....++..+......+.....+.+|+.+.++.++|.+.... ....+..
T Consensus 390 ~~v~iL~~G~~lVl~~~lTlG~LiAf~~l~~~f~~pi~~L~~~~~~~q~~~~~~~rL~dil~~~~E~~~~~~-~~~~~~~ 468 (709)
T COG2274 390 SSVLILWFGAILVLEGELTLGQLVAFNMLAGYFISPITRLSQLWTDFQQAKVALERLGDILDTPPEQEGDKT-LIHLPKL 468 (709)
T ss_pred HHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccc-ccccccc
Confidence 889999999999999999999998876555555668888888899999999999999999998877443221 2344566
Q ss_pred cccEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhc
Q 000984 381 RGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRK 460 (1198)
Q Consensus 381 ~g~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~ 460 (1198)
+|+|+++||+|+|+.+ ++++|+|+||+|+|||++||||+||||||||+|+|.|+|+|++|+|.+||.|+++++++.+|+
T Consensus 469 ~g~I~~~nvsf~y~~~-~~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~dg~dl~~i~~~~lR~ 547 (709)
T COG2274 469 QGEIEFENVSFRYGPD-DPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLNDIDLASLRR 547 (709)
T ss_pred CceEEEEEEEEEeCCC-CcchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEeHHhcCHHHHHh
Confidence 8999999999999765 357999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEcCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhhccC
Q 000984 461 KIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKD 540 (1198)
Q Consensus 461 ~i~~v~Q~~~l~~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal~~~ 540 (1198)
+|+||+||+.||+|||||||+++.|+.++|+++++|+.++++++|+++|.||+|.+||+|.+|||||||||+||||++++
T Consensus 548 ~ig~V~Q~~~Lf~gSI~eNi~l~~p~~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGGQrQrlalARaLl~~ 627 (709)
T COG2274 548 QVGYVLQDPFLFSGSIRENIALGNPEATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQRLALARALLSK 627 (709)
T ss_pred heeEEcccchhhcCcHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHhccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHhHHHHHHHHHHHhCCCeEEEEecCcchhhccCEEEEEeCCEEEEecChhhHhcCCCchhHHHHH
Q 000984 541 PRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVEDPEGAYSQLIR 620 (1198)
Q Consensus 541 ~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~ 620 (1198)
|+||||||||||||+++|+.|.+.+.+..++||+|+||||++++++||||+|||+|+|+++|+|+||++. +|.|.++++
T Consensus 628 P~ILlLDEaTSaLD~~sE~~I~~~L~~~~~~~T~I~IaHRl~ti~~adrIiVl~~Gkiv~~gs~~ell~~-~g~y~~l~~ 706 (709)
T COG2274 628 PKILLLDEATSALDPETEAIILQNLLQILQGRTVIIIAHRLSTIRSADRIIVLDQGKIVEQGSHEELLAQ-GGLYARLYQ 706 (709)
T ss_pred CCEEEEeCcccccCHhHHHHHHHHHHHHhcCCeEEEEEccchHhhhccEEEEccCCceeccCCHHHHHHh-cChHHHHHh
Confidence 9999999999999999999999999999999999999999999999999999999999999999999998 899999887
Q ss_pred HH
Q 000984 621 LQ 622 (1198)
Q Consensus 621 ~~ 622 (1198)
.|
T Consensus 707 ~q 708 (709)
T COG2274 707 QQ 708 (709)
T ss_pred cc
Confidence 54
|
|
| >KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-86 Score=829.02 Aligned_cols=574 Identities=22% Similarity=0.325 Sum_probs=488.0
Q ss_pred ccccccccchHHHHHHhhch-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCchhhHHHHHHHHHHHHHHHH
Q 000984 36 KQTEKTESVPFYKLFTFADS-ADTALMIIGSIGAIGNGLCLPLMTLLFGDLINTFGDNQNNSETVDKVSKVAVKFVYLGI 114 (1198)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 114 (1198)
.++++.+.+++..|..|++. .++...++.+++.++..++.....+|+..|.+.-...... . .....+..+|.++++
T Consensus 793 ~ee~~~G~v~~~vY~~Y~~a~~g~~~~~~~~~~~v~~~~~~~~~~~WLs~W~~~~~~~~~~--~-~~~~~~~~vY~~l~~ 869 (1381)
T KOG0054|consen 793 EEERETGKVSWSVYKKYIKAAGGFLLVLLILLLFVLTQVLQIASNYWLSYWTDDGEDNGTT--T-VSTSFYLGVYALLGV 869 (1381)
T ss_pred HHHHhcCEeeHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccc--C-CCcchHHHHHHHHHH
Confidence 34446677888888888876 4444444445556666666666666766665542111100 0 112345567788899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhccCCcchHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000984 115 GSGIASFLQVTCWMITGERQATRIRGLYLKTILRQDVAFFDNETNTGEVVGRMSGDTVLIQDAMGEKVGKFLQLMATFLG 194 (1198)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~f~~~~~~G~i~~r~s~D~~~i~~~~~~~~~~~~~~~~~~i~ 194 (1198)
+..++.+++.+.+.+.+.++++++|..++++++|.||+|||+ ||+|+|+||||+|++.+|+.+|..+..+++.++.+++
T Consensus 870 ~~~~~~~~rs~~~~~~~l~aS~~Lh~~ml~~Ilrapm~FFdt-TP~GRILNRFSkD~~~vD~~Lp~~~~~~~~~~~~~l~ 948 (1381)
T KOG0054|consen 870 ASSLLTLLRSFLFAKGGLKASRKLHDKLLNSILRAPMSFFDT-TPTGRILNRFSKDIDTVDVLLPFTLEFFLQSLLNVLG 948 (1381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhcCC-CCccchhhhcccchHHHHHhhHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999997 6999999999999999999999999999999999999
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcHHHHHHHHHHHHH
Q 000984 195 GFLIAFIKGWLLTLVMLSSIPLLAMSGGVMAIMISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLV 274 (1198)
Q Consensus 195 ~~i~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~ 274 (1198)
.++++.+..|+..++++++..+++.+..+|....+...+.....+++..+|++|+++|+.|||+|+.|++|.+++.+..+
T Consensus 949 ~~~vi~~~~P~fli~~~pl~v~~~~~~~~Y~~tsReLkRLesitRSPi~sh~~Etl~GlsTIRAf~~~~rf~~~~~~~~D 1028 (1381)
T KOG0054|consen 949 ILVVISYVTPWFLIAIIPLGVIYYFVQRYYLATSRELKRLESITRSPIYSHFSETLQGLSTIRAFGKEERFIQENDELID 1028 (1381)
T ss_pred HHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhcccchHHHhHHHHhcCcceeeeccccHHHHHHHHHHhh
Confidence 99999999998888887777777788888888888888888888999999999999999999999999999999988877
Q ss_pred HHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000984 275 TAYKSG---VQEGLAAGIGLGMVMLIVFCSYALSVWYGGKLILEEGYNGGQVVNVMVAVLTGSMSLGEASPCLSAFGAGQ 351 (1198)
Q Consensus 275 ~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~ 351 (1198)
.+.+.. ....+|.++++.+...+..+..++...+. ..+..++|.+.-.+.+.+.....+++.......+...+
T Consensus 1029 ~~~~~~f~~~~a~RWla~Rle~ig~~~v~~~al~~vl~----~~~~~~~g~vGLslsyal~lt~~l~~~vR~~~elEn~m 1104 (1381)
T KOG0054|consen 1029 ENSRAFFLSISANRWLAVRLELLGNLVVLIAALFAVLL----PSGLISPGLVGLSLSYALQLTGLLQWLVRQSSELENNM 1104 (1381)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc----cCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 766553 34566677777765444333333222221 12225567666666677777788888888899999999
Q ss_pred HHHHHHHHHHccCCCCCccCC---CCcccCCCcccEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHH
Q 000984 352 AAAFKMFETINRKPEIDAYDT---KGKILDDIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTV 428 (1198)
Q Consensus 352 ~~~~r~~~~~~~~~~~~~~~~---~~~~~~~~~g~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl 428 (1198)
.+++|+.++.+.++| .+... .+++.||.+|.|+|+|++.+|... .++|||||||+|+|||+|||||+||||||||
T Consensus 1105 ~SVERv~eY~~~~~E-~p~~~~~~~pp~~WP~~G~I~f~~~~~RYrp~-lp~VLk~is~~I~p~eKVGIVGRTGaGKSSL 1182 (1381)
T KOG0054|consen 1105 VSVERVLEYTDIPSE-APLEIEESRPPPSWPSKGEIEFEDLSLRYRPN-LPLVLKGISFTIKPGEKVGIVGRTGAGKSSL 1182 (1381)
T ss_pred hhhhHHHHHhcCCCC-CCCCCcCCCCCCCCCCCCeEEEEEeEEEeCCC-CcchhcCceEEEcCCceEEEeCCCCCCHHHH
Confidence 999999999987666 22221 135568889999999999999643 5789999999999999999999999999999
Q ss_pred HHHHhccCCCCCCeEEECCeecCCcCHHHHhcceEEEcCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhC
Q 000984 429 ISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKL 508 (1198)
Q Consensus 429 ~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l 508 (1198)
+++|+|+.+|.+|+|.|||+||+++++++||++++++||||.||+||+|.||+ +..+++|+++|+|++.|++.+.++++
T Consensus 1183 ~~aLFRl~e~~~G~I~IDgvdI~~igL~dLRsrlsIIPQdPvLFsGTvR~NLD-Pf~e~sD~~IW~ALe~~~Lk~~v~~~ 1261 (1381)
T KOG0054|consen 1183 ILALFRLVEPAEGEILIDGVDISKIGLHDLRSRLSIIPQDPVLFSGTVRFNLD-PFDEYSDDEIWEALERCQLKDVVSSL 1261 (1381)
T ss_pred HHHHHHhcCccCCeEEEcCeecccccHHHHHhcCeeeCCCCceecCccccccC-cccccCHHHHHHHHHHhChHHHHhhC
Confidence 99999999999999999999999999999999999999999999999999999 67789999999999999999999999
Q ss_pred CCCccchhcCCCCCCChHHHHHHhHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhCCCeEEEEecCcchhhccC
Q 000984 509 PQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNAD 588 (1198)
Q Consensus 509 ~~g~~t~v~~~g~~lSgGqkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~~d 588 (1198)
|+|+|+.|.|+|.|||.||||.+||||||+|+++||+||||||++|++|+..||+.|++.+++||||+|+||++++.++|
T Consensus 1262 p~~Ld~~v~egG~N~SvGQRQLlCLARALLr~skILvLDEATAsVD~~TD~lIQ~tIR~~F~dcTVltIAHRl~TVmd~D 1341 (1381)
T KOG0054|consen 1262 PGGLDSEVSEGGENFSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREEFKDCTVLTIAHRLNTVMDSD 1341 (1381)
T ss_pred CcCCCceecCCCccCChHHHHHHHHHHHHhccCCEEEEecccccCChHHHHHHHHHHHHHhcCCeEEEEeeccchhhhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEeCCEEEEecChhhHhcCCCchhHHHHH
Q 000984 589 MIAVIHRGKIVEKGTHSKLVEDPEGAYSQLIR 620 (1198)
Q Consensus 589 ~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~ 620 (1198)
||+|||+|+|+|+|+|++|++++++.|++++.
T Consensus 1342 rVlVld~G~v~EfdsP~~Ll~~~~S~f~~~l~ 1373 (1381)
T KOG0054|consen 1342 RVLVLDAGRVVEFDSPAELLSDKDSLFSSLLK 1373 (1381)
T ss_pred eEEEeeCCeEeecCChHHHHhCCcchHHHHHH
Confidence 99999999999999999999998888875554
|
|
| >PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-80 Score=770.50 Aligned_cols=567 Identities=22% Similarity=0.297 Sum_probs=458.9
Q ss_pred HHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000984 46 FYKLFTFADSADTALMIIGSIGAIGNGLCLPLMTLLFGDLINTFGDNQNNSETVDKVSKVAVKFVYLGIGSGIASFLQVT 125 (1198)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 125 (1198)
++.+++|.++..+. +++++++.++..++.+..|++++.++|........ ......+...++++.++..++.+++.+
T Consensus 10 ~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (588)
T PRK11174 10 TRWLKQQSKPAKRW-LNLSILLGFLSGLLLIAQAWLLATILQALIIENIP---REALLPPFILLILLFVLRALLAWLRER 85 (588)
T ss_pred hHHHHHHhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc---hhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566676665443 33455555556666667777888888865321111 111222233344445556677788888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCChhhhhccCCcchHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 000984 126 CWMITGERQATRIRGLYLKTILRQDVAFFDNETNTGEVVGRMSGDTVLIQDAMGEKVGKFLQLMATFLGGFLIAFIKGWL 205 (1198)
Q Consensus 126 ~~~~~~~~~~~~lr~~~~~~ll~~~~~~f~~~~~~G~i~~r~s~D~~~i~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~ 205 (1198)
.....+.+...++|..+++++++.|+++|++. ++|++++|+++|++.+++.+...+..++..+..+++.++++++++|.
T Consensus 86 ~~~~~~~~~~~~lr~~~~~~ll~~~~~~~~~~-~~g~l~s~~~~dv~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 164 (588)
T PRK11174 86 VGFKAGQHIRQQIRQQVLDKLQQLGPAWIQGK-PAGSWATLVLEQVEDMHDFYARYLPQMALAVLVPLLILIAVFPINWA 164 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCchhhccC-CHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888999999999999999999999999874 99999999999999999999888888888888888888999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHH
Q 000984 206 LTLVMLSSIPLLAMSGGVMAIMISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYKSGVQEGL 285 (1198)
Q Consensus 206 l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 285 (1198)
+++++++++|+++++..++.+..++..++.++..++..+.+.|.++|+++||+|++|+.+.+++.+..++..+...+...
T Consensus 165 l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 244 (588)
T PRK11174 165 AGLILLGTAPLIPLFMALVGMGAADANRRNFLALARLSGHFLDRLRGLETLRLFNRGEAETESIRSASEDFRQRTMEVLR 244 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999989999888888888888888888888899999999999999999999999999999998888877766665555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHH------HHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000984 286 AAGIGLGMVMLIVFCSYALSVWYGGKLILEEGYNGGQV------VNV---MVAVLTGSMSLGEASPCLSAFGAGQAAAFK 356 (1198)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~------~~~---~~~~l~~~~~l~~~~~~~~~~~~~~~~~~r 356 (1198)
..+....+..++..+..++.+++++.... +.++.|.+ +.. +........++..+...+..+..+..+++|
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~t~G~l~~~~~~~~~~~~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~r 323 (588)
T PRK11174 245 MAFLSSAVLEFFASISIALVAVYFGFSYL-GELNFGHYGTGVTLFAGFFVLILAPEFYQPLRDLGTFYHAKAQAVGAAES 323 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cccccccccccchHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44433333333333333233233333322 55555543 111 112222345666777777888899999999
Q ss_pred HHHHHccCCCCCccCCCCcccCCCcccEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccC
Q 000984 357 MFETINRKPEIDAYDTKGKILDDIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFY 436 (1198)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~ 436 (1198)
+.++++.+++..... ....+....+.|+++||+|.|++ ++++|+|+||+|+|||++|||||||||||||+++|+|++
T Consensus 324 i~~~l~~~~~~~~~~-~~~~~~~~~~~i~~~~vsf~~~~--~~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~ 400 (588)
T PRK11174 324 LVTFLETPLAHPQQG-EKELASNDPVTIEAEDLEILSPD--GKTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL 400 (588)
T ss_pred HHHHHcCCCcccCCC-ccccCCCCCceEEEEeeEEeccC--CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 999997654321111 11111112356999999987763 357999999999999999999999999999999999999
Q ss_pred CCCCCeEEECCeecCCcCHHHHhcceEEEcCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchh
Q 000984 437 DPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLV 516 (1198)
Q Consensus 437 ~~~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v 516 (1198)
|++|+|.+||+|+++++.+++|++|+||||+|+||+|||||||.+|.|++++++++++|+.++++++++++|+|+||.+
T Consensus 401 -p~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~LF~~TI~eNI~~g~~~~~~eei~~al~~a~l~~~i~~lp~G~dT~v 479 (588)
T PRK11174 401 -PYQGSLKINGIELRELDPESWRKHLSWVGQNPQLPHGTLRDNVLLGNPDASDEQLQQALENAWVSEFLPLLPQGLDTPI 479 (588)
T ss_pred -CCCcEEEECCEecccCCHHHHHhheEEecCCCcCCCcCHHHHhhcCCCCCCHHHHHHHHHHhCHHHHHHhccccccccc
Confidence 9999999999999999999999999999999999999999999999889999999999999999999999999999999
Q ss_pred cCCCCCCChHHHHHHhHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhCCCeEEEEecCcchhhccCEEEEEeCC
Q 000984 517 GEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRG 596 (1198)
Q Consensus 517 ~~~g~~lSgGqkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G 596 (1198)
||+|.+|||||||||+||||++++|+|||||||||+||+++++.+++++++..+++|+|+||||++++..||+|++|++|
T Consensus 480 ge~G~~LSGGQrQRialARAll~~~~IliLDE~TSaLD~~te~~i~~~l~~~~~~~TvIiItHrl~~i~~aD~Iivl~~G 559 (588)
T PRK11174 480 GDQAAGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAASRRQTTLMVTHQLEDLAQWDQIWVMQDG 559 (588)
T ss_pred ccCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhCCCEEEEEecChHHHHhCCEEEEEeCC
Confidence 99999999999999999999999999999999999999999999999999998999999999999999999999999999
Q ss_pred EEEEecChhhHhcCCCchhHHHHHHHh
Q 000984 597 KIVEKGTHSKLVEDPEGAYSQLIRLQE 623 (1198)
Q Consensus 597 ~i~~~g~~~~l~~~~~~~~~~~~~~~~ 623 (1198)
+|+|.|+|+||+++ ++.|+++++.|+
T Consensus 560 ~i~e~G~~~eL~~~-~~~y~~l~~~q~ 585 (588)
T PRK11174 560 QIVQQGDYAELSQA-GGLFATLLAHRQ 585 (588)
T ss_pred eEeecCCHHHHHhc-chHHHHHHHHhh
Confidence 99999999999987 689999987654
|
|
| >PTZ00265 multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-80 Score=816.58 Aligned_cols=570 Identities=29% Similarity=0.463 Sum_probs=477.0
Q ss_pred HHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000984 46 FYKLFTFADSADTALMIIGSIGAIGNGLCLPLMTLLFGDLINTFGDNQNNSETVDKVSKVAVKFVYLGIGSGIASFLQVT 125 (1198)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 125 (1198)
+..++++..++.. .++++++++++.+++.|+++++++.+++.+.... ........+++++++++++.+++.+++.+
T Consensus 813 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~---~~~~~~~~~~l~~~~~~i~~~~~~~l~~~ 888 (1466)
T PTZ00265 813 LRIVYREIFSYKK-DVTIIALSILVAGGLYPVFALLYAKYVSTLFDFA---NLEANSNKYSLYILVIAIAMFISETLKNY 888 (1466)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcch---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444554433332 2556667778888999999999999998764321 11122334556667777888888999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCChhhhhc-cCCcchHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 000984 126 CWMITGERQATRIRGLYLKTILRQDVAFFDN-ETNTGEVVGRMSGDTVLIQDAMGEKVGKFLQLMATFLGGFLIAFIKGW 204 (1198)
Q Consensus 126 ~~~~~~~~~~~~lr~~~~~~ll~~~~~~f~~-~~~~G~i~~r~s~D~~~i~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~ 204 (1198)
+..+.+.++..++|..++++++++|++|||. .+++|++++|+++|++.+++.+...+..++..+..+++.++++++++|
T Consensus 889 ~~~~~~~~~~~~lR~~lf~~ll~~~~~~fd~~~~~~G~l~srl~~Dv~~l~~~~~~~l~~~~~~i~~~i~~~~~~~~~~~ 968 (1466)
T PTZ00265 889 YNNVIGEKVEKTMKRRLFENILYQEISFFDQDKHAPGLLSAHINRDVHLLKTGLVNNIVIFTHFIVLFLVSMVMSFYFCP 968 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999984 347999999999999999999998899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH-----------------HHHHHHHHHHHHHHHHhhHHHHHHhCcHHHHH
Q 000984 205 LLTLVMLSSIPLLAMSGGVMAIMISKMS-SR-----------------GQGAYAKAASVVEQTIGSIRTVASFTGEKQAM 266 (1198)
Q Consensus 205 ~l~l~~~~~~~~~~~~~~~~~~~~~~~~-~~-----------------~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~ 266 (1198)
.+++++++++++ +...+.+..+... .+ .++...+....+.|++.|+++||+|+.|+.+.
T Consensus 969 ~l~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tVka~~~e~~~~ 1045 (1466)
T PTZ00265 969 IVAAVLTGTYFI---FMRVFAIRARLTANKDVEKKEINQPGTVFAYNSDDEIFKDPSFLIQEAFYNMNTVIIYGLEDYFC 1045 (1466)
T ss_pred HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhhhccccccccchhhhHHHHHHHHHHHHHHHhcHHHHHHhcchHHHH
Confidence 887766543333 2333333222111 11 12234566889999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000984 267 SNYKKFLVTAYKSGVQEGLAAGIGLGMVMLIVFCSYALSVWYGGKLILEEGYNGGQVVNVMVAVLTGSMSLGEASPCLSA 346 (1198)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~ 346 (1198)
++|.+..++..+...+.....++..++..++..+..++++|+|+.++..+.++.|.++.++.+++....++..+...+..
T Consensus 1046 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~lv~~g~it~g~l~~~~~~~~~~~~~~~~l~~~~~~ 1125 (1466)
T PTZ00265 1046 NLIEKAIDYSNKGQKRKTLVNSMLWGFSQSAQLFINSFAYWFGSFLIRRGTILVDDFMKSLFTFLFTGSYAGKLMSLKGD 1125 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999998888777777777777777777777777888899999999999999999887665544443455666777888
Q ss_pred HHHHHHHHHHHHHHHccCCCCCccCCCCcc---cCCCcccEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCC
Q 000984 347 FGAGQAAAFKMFETINRKPEIDAYDTKGKI---LDDIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGS 423 (1198)
Q Consensus 347 ~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~---~~~~~g~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~Gs 423 (1198)
+..+..+++|+++.++.+++.+..+..... +.+..|.|+|+||+|+||++++.++|+|+||+|+||+++||||||||
T Consensus 1126 ~~~a~~a~~ri~~ll~~~~~~~~~~~~~~~~~~~~~~~g~I~f~nVsF~Y~~~~~~~vL~~lsl~i~~G~~vAIVG~SGs 1205 (1466)
T PTZ00265 1126 SENAKLSFEKYYPLIIRKSNIDVRDNGGIRIKNKNDIKGKIEIMDVNFRYISRPNVPIYKDLTFSCDSKKTTAIVGETGS 1205 (1466)
T ss_pred HHHHHHHHHHHHHHHCCCCcCCCCCCcccccccCCCCCceEEEEEEEEECCCCCCCccccCeeEEEcCCCEEEEECCCCC
Confidence 889999999999999876543221111111 12345789999999999876666899999999999999999999999
Q ss_pred cHHHHHHHHhccCCC------------------------------------------------------CCCeEEECCee
Q 000984 424 GKSTVISLIERFYDP------------------------------------------------------QAGEVLIDGIN 449 (1198)
Q Consensus 424 GKStl~~~l~g~~~~------------------------------------------------------~~G~i~i~g~~ 449 (1198)
|||||+++|+|+|+| ++|+|.+||+|
T Consensus 1206 GKSTl~~LL~r~ydp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~d 1285 (1466)
T PTZ00265 1206 GKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQDYQGDEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVD 1285 (1466)
T ss_pred CHHHHHHHHHHhCCCccccccccccccccccccccccccccccccccccccccccccccccccccccCCCCCeEEECCEE
Confidence 999999999999998 69999999999
Q ss_pred cCCcCHHHHhcceEEEcCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHH
Q 000984 450 LKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQ 529 (1198)
Q Consensus 450 ~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkq 529 (1198)
+++++.+++|++|+||||+|+||+|||||||.+|.++++++++++||+.++++++|.+||+||||.|||+|.+|||||||
T Consensus 1286 i~~~~~~~lR~~i~~V~Qep~LF~gTIreNI~~g~~~at~eeI~~A~k~A~l~~fI~~LP~GydT~VGe~G~~LSGGQkQ 1365 (1466)
T PTZ00265 1286 ICDYNLKDLRNLFSIVSQEPMLFNMSIYENIKFGKEDATREDVKRACKFAAIDEFIESLPNKYDTNVGPYGKSLSGGQKQ 1365 (1466)
T ss_pred HHhCCHHHHHhhccEeCCCCccccccHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCccccCCccCCCCCcCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh--CCCeEEEEecCcchhhccCEEEEEeC----CEEE-Eec
Q 000984 530 RIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIM--VNRTTVIVAHRLSTVRNADMIAVIHR----GKIV-EKG 602 (1198)
Q Consensus 530 ri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~--~~~t~i~itH~~~~~~~~d~i~~l~~----G~i~-~~g 602 (1198)
||||||||+++|+||||||||||||+++++.|+++|.+.. +++|+|+||||+++++.||+|+||++ |+++ |+|
T Consensus 1366 RIaIARALlr~p~ILLLDEaTSaLD~~sE~~I~~~L~~~~~~~~~TvIiIaHRlsti~~aD~Ivvl~~~~~~G~iv~e~G 1445 (1466)
T PTZ00265 1366 RIAIARALLREPKILLLDEATSSLDSNSEKLIEKTIVDIKDKADKTIITIAHRIASIKRSDKIVVFNNPDRTGSFVQAHG 1445 (1466)
T ss_pred HHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHhccCCCEEEEEechHHHHHhCCEEEEEeCCCCCCCEEEEec
Confidence 9999999999999999999999999999999999999884 68999999999999999999999999 9955 899
Q ss_pred ChhhHhcCCCchhHHHHHHH
Q 000984 603 THSKLVEDPEGAYSQLIRLQ 622 (1198)
Q Consensus 603 ~~~~l~~~~~~~~~~~~~~~ 622 (1198)
+|+||++..++.|+++++.+
T Consensus 1446 th~eLl~~~~g~Y~~l~~~~ 1465 (1466)
T PTZ00265 1446 THEELLSVQDGVYKKYVKLA 1465 (1466)
T ss_pred CHHHHHhcCCChHHHHHhhc
Confidence 99999985478999998754
|
|
| >TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-80 Score=775.66 Aligned_cols=565 Identities=36% Similarity=0.556 Sum_probs=481.1
Q ss_pred cchHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 000984 43 SVPFYKLFTFADSADTALMIIGSIGAIGNGLCLPLMTLLFGDLINTFGDNQNNSETVDKVSKVAVKFVYLGIGSGIASFL 122 (1198)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 122 (1198)
...+++++++.++... .+++.+++.++..++....|++.+.++|......+. .......+.++++.++..++.++
T Consensus 146 ~~~~~~l~~~~~~~~~-~l~~~~~~~~~~~l~~~~~p~~~~~iid~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~l 220 (711)
T TIGR00958 146 ADLLFRLLGLSGRDWP-WLISAFVFLTLSSLGEMFIPFYTGRVIDTLGGDKGP----PALASAIFFMCLLSIASSVSAGL 220 (711)
T ss_pred hhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCH----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677777765433 334444455555566666777888888876533221 11112223334445556677778
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhccCCcchHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000984 123 QVTCWMITGERQATRIRGLYLKTILRQDVAFFDNETNTGEVVGRMSGDTVLIQDAMGEKVGKFLQLMATFLGGFLIAFIK 202 (1198)
Q Consensus 123 ~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~f~~~~~~G~i~~r~s~D~~~i~~~~~~~~~~~~~~~~~~i~~~i~~~~~ 202 (1198)
+..++.+.+.+...++|..++++++++|+++|++ +++|++++|+++|++.+++.+...+..++..+..+++.+++++.+
T Consensus 221 ~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~f~~-~~~G~i~srl~~Di~~i~~~~~~~~~~~l~~~~~~i~~~~~l~~~ 299 (711)
T TIGR00958 221 RGGSFNYTMARINLRIREDLFRSLLRQDLGFFDE-NKTGELTSRLSSDTQTMSRSLSLNVNVLLRNLVMLLGLLGFMLWL 299 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHcC-CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888899999999999999999999999997 499999999999999999999988888999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcHHHHHHHHHHHHHHHHHHHHH
Q 000984 203 GWLLTLVMLSSIPLLAMSGGVMAIMISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYKSGVQ 282 (1198)
Q Consensus 203 ~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~ 282 (1198)
+|.+++++++.+|+.+++..++.++.++..++.++..++..+.+.|.++|+++||+|++|+.+.++|.+..++..+...+
T Consensus 300 s~~l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~ 379 (711)
T TIGR00958 300 SPRLTMVTLINLPLVFLAEKVFGKRYQLLSEELQEAVAKANQVAEEALSGMRTVRSFAAEEGEASRFKEALEETLQLNKR 379 (711)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhcccHHHHHHHHHHHHHHHHHHHH
Confidence 99999999888999888888899888888888888999999999999999999999999999999999988887777666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 000984 283 EGLAAGIGLGMVMLIVFCSYALSVWYGGKLILEEGYNGGQVVNVMVAVLTGSMSLGEASPCLSAFGAGQAAAFKMFETIN 362 (1198)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~ 362 (1198)
.....+....+..++..+..++.+++|.+++..+.++.|.+++++.+......++..+......+..+..+.+|++++++
T Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~il~~g~~lv~~g~it~G~lva~~~~~~~l~~~l~~l~~~~~~~~~~~~a~~ri~~~l~ 459 (711)
T TIGR00958 380 KALAYAGYLWTTSVLGMLIQVLVLYYGGQLVLTGKVSSGNLVSFLLYQEQLGEAVRVLSYVYSGMMQAVGASEKVFEYLD 459 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 65555554444444555556666778888899999999999888777777777888888889999999999999999998
Q ss_pred cCCCCCccCCCCcccCCCcccEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCe
Q 000984 363 RKPEIDAYDTKGKILDDIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGE 442 (1198)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~g~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~ 442 (1198)
.+++.+... ...+.+..+.|+++||+|+||+++++++|+|+||+|+|||+++||||||||||||+++|+|+|+|++|+
T Consensus 460 ~~~~~~~~~--~~~~~~~~~~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~ 537 (711)
T TIGR00958 460 RKPNIPLTG--TLAPLNLEGLIEFQDVSFSYPNRPDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQ 537 (711)
T ss_pred CCCCCCCCC--CCCCCCCCCeEEEEEEEEECCCCCCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCCCCCE
Confidence 765532211 112223456799999999998765578999999999999999999999999999999999999999999
Q ss_pred EEECCeecCCcCHHHHhcceEEEcCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCC
Q 000984 443 VLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQ 522 (1198)
Q Consensus 443 i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~ 522 (1198)
|.+||+|+++++.+++|++|+||||||++|++||||||.++.++.++++++++++.++++++++++|+|+||.+||+|.+
T Consensus 538 I~idg~~i~~~~~~~lr~~i~~v~Q~~~lF~gTIreNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~ 617 (711)
T TIGR00958 538 VLLDGVPLVQYDHHYLHRQVALVGQEPVLFSGSVRENIAYGLTDTPDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQ 617 (711)
T ss_pred EEECCEEHHhcCHHHHHhhceEEecCccccccCHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCCCccCCcccCCCCc
Confidence 99999999999999999999999999999999999999999888899999999999999999999999999999999999
Q ss_pred CChHHHHHHhHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhCCCeEEEEecCcchhhccCEEEEEeCCEEEEec
Q 000984 523 LSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKG 602 (1198)
Q Consensus 523 lSgGqkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g 602 (1198)
|||||||||+||||++++|+|||||||||+||+++++.+++ ....+++|+|+||||++++..||+|++|++|+|+|.|
T Consensus 618 LSGGQkQRlalARALl~~p~ILILDEpTSaLD~~te~~i~~--~~~~~~~TvIiItHrl~~i~~aD~IivL~~G~ive~G 695 (711)
T TIGR00958 618 LSGGQKQRIAIARALVRKPRVLILDEATSALDAECEQLLQE--SRSRASRTVLLIAHRLSTVERADQILVLKKGSVVEMG 695 (711)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEEccccccCHHHHHHHHH--hhccCCCeEEEEeccHHHHHhCCEEEEEECCEEEEee
Confidence 99999999999999999999999999999999999999988 3345789999999999999999999999999999999
Q ss_pred ChhhHhcCCCchhHHH
Q 000984 603 THSKLVEDPEGAYSQL 618 (1198)
Q Consensus 603 ~~~~l~~~~~~~~~~~ 618 (1198)
+|+||+++ ++.|+++
T Consensus 696 t~~eL~~~-~~~y~~l 710 (711)
T TIGR00958 696 THKQLMED-QGCYKHL 710 (711)
T ss_pred CHHHHHhC-CCchHhc
Confidence 99999987 5777765
|
|
| >COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-79 Score=753.53 Aligned_cols=551 Identities=34% Similarity=0.592 Sum_probs=474.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000984 60 LMIIGSIGAIGNGLCLPLMTLLFGDLINTFGDNQNNSETVDKVSKVAVKFVYLGIGSGIASFLQVTCWMITGERQATRIR 139 (1198)
Q Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lr 139 (1198)
.+.++.++.++...+....+++++.+++.... .. .....+...++++.++..++.++..+...+.+.+...++|
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~----~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~lr 88 (567)
T COG1132 15 LLLLAILLLLLSALLSLLLPLLIGRIIDALLA--DL----GELLELLLLLLLLALLGGVLRALQSYLGSRLGQKIVADLR 88 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh--hH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444445555555666677777776541 11 1122233334444556666777777777777799999999
Q ss_pred HHHHHHHHhCChhhhhccCCcchHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 000984 140 GLYLKTILRQDVAFFDNETNTGEVVGRMSGDTVLIQDAMGEKVGKFLQLMATFLGGFLIAFIKGWLLTLVMLSSIPLLAM 219 (1198)
Q Consensus 140 ~~~~~~ll~~~~~~f~~~~~~G~i~~r~s~D~~~i~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~l~l~~~~~~~~~~~ 219 (1198)
..+++++++.|+++|+. +++|++++|+++|++.++..+......+...+..+++.+++++..+|.+++++++..|++.+
T Consensus 89 ~~~~~~l~~~~~~~~~~-~~~g~l~~~~t~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~ 167 (567)
T COG1132 89 RDLFEKLLRLPLSFFDK-AKSGDLISRLTNDVEAVSNLVSTVLVLVFTSILLLIGSLVLLFSLSWRLALILLLILPLLAL 167 (567)
T ss_pred HHHHHHHHhCCHHHhCc-CCcchHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 99999999999999997 48999999999999999999988755555567888889999999999999999888899888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000984 220 SGGVMAIMISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYKSGVQEGLAAGIGLGMVMLIVF 299 (1198)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (1198)
...++.++.++..+..++..++..+.+.|.++|++++|+|+.++...+++.+..++..+...+.....+....+...+..
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (567)
T COG1132 168 VLSLLARKSRKLSRRVREALGELNARLLESLSGIRVIKAFGAEDRELKRFEEANEELRRANLRASRLEALLAPLMLLLSS 247 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888877788888888889999999999999999999999999998888888877777766666666666566666777
Q ss_pred HHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCccCCCCcccCC
Q 000984 300 CSYALSVWYGGKLILEEGYNGGQVVNVMVAVLTGSMSLGEASPCLSAFGAGQAAAFKMFETINRKPEIDAYDTKGKILDD 379 (1198)
Q Consensus 300 ~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~ 379 (1198)
+.+.+.+++|...+..+.++.|.+..++.+......++..+......+..+..+++|+++.++.+++....... ...
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~---~~~ 324 (567)
T COG1132 248 LGTVLVLALGGFLVLSGSLTVGALAAFILYLLRLLTPILQLGEVVSLLQRASAAAERLFELLDEEPEVEDPPDP---LKD 324 (567)
T ss_pred HHHHHHHHHHHHHHHcCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCCCCC---CCC
Confidence 77778888888888888899999888777777767788888888888889999999999999886653322211 223
Q ss_pred CcccEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHh
Q 000984 380 IRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIR 459 (1198)
Q Consensus 380 ~~g~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r 459 (1198)
..+.|+|+||+|+|++ ++++|+|+||+++|||++|||||||||||||+++|+|+|+|++|+|.+||+|+++++.+++|
T Consensus 325 ~~~~I~f~~vsf~y~~--~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~idg~dI~~i~~~~lr 402 (567)
T COG1132 325 TIGSIEFENVSFSYPG--KKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLDSLR 402 (567)
T ss_pred CCCeEEEEEEEEEcCC--CCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCEehhhcCHHHHH
Confidence 4577999999999974 35799999999999999999999999999999999999999999999999999999999999
Q ss_pred cceEEEcCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhhcc
Q 000984 460 KKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILK 539 (1198)
Q Consensus 460 ~~i~~v~Q~~~l~~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal~~ 539 (1198)
++|++|||||+||++||+|||.+|.|++++++++++|+.++++++++++|+|+||.+||+|.+||||||||||||||+++
T Consensus 403 ~~I~~V~Qd~~LF~~TI~~NI~~g~~~at~eei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LSgGQrQrlaiARall~ 482 (567)
T COG1132 403 KRIGIVSQDPLLFSGTIRENIALGRPDATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQRLAIARALLR 482 (567)
T ss_pred HhccEEcccceeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCcccccceecCCCccCCHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHhHHHHHHHHHHHhCCCeEEEEecCcchhhccCEEEEEeCCEEEEecChhhHhcCCCchhHHHH
Q 000984 540 DPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVEDPEGAYSQLI 619 (1198)
Q Consensus 540 ~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~ 619 (1198)
+|+|||||||||+||+++|+.+++.+.++.++||+|+||||++++++||+|+|||+|+|+|.|+|+||+++ ++.|++++
T Consensus 483 ~~~ILILDEaTSalD~~tE~~I~~~l~~l~~~rT~iiIaHRlsti~~aD~IiVl~~G~i~e~G~h~eLl~~-~g~y~~l~ 561 (567)
T COG1132 483 NPPILILDEATSALDTETEALIQDALKKLLKGRTTLIIAHRLSTIKNADRIIVLDNGRIVERGTHEELLAK-GGLYARLY 561 (567)
T ss_pred CCCEEEEeccccccCHHhHHHHHHHHHHHhcCCEEEEEeccHhHHHhCCEEEEEECCEEEEecCHHHHHHc-CCHHHHHH
Confidence 99999999999999999999999999988889999999999999999999999999999999999999998 89999999
Q ss_pred HHHh
Q 000984 620 RLQE 623 (1198)
Q Consensus 620 ~~~~ 623 (1198)
+.+.
T Consensus 562 ~~~~ 565 (567)
T COG1132 562 QAQG 565 (567)
T ss_pred HHhh
Confidence 8654
|
|
| >TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-78 Score=759.41 Aligned_cols=563 Identities=27% Similarity=0.360 Sum_probs=473.1
Q ss_pred chHHHHHHh-hchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 000984 44 VPFYKLFTF-ADSADTALMIIGSIGAIGNGLCLPLMTLLFGDLINTFGDNQNNSETVDKVSKVAVKFVYLGIGSGIASFL 122 (1198)
Q Consensus 44 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 122 (1198)
..++.++++ ..+.++. ++..+++.++..++....|++++.++|......+ .+.....++.++++.++..++.++
T Consensus 121 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~p~~~~~iid~v~~~~~----~~~l~~~~~~~~~~~~~~~~~~~~ 195 (686)
T TIGR03797 121 LGLRDLLRFALRGARRD-LLAILAMGLLGTLLGMLVPIATGILIGTAIPDAD----RSLLVQIALALLAAAVGAAAFQLA 195 (686)
T ss_pred ccHHHHHHHHHhhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC----hhHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566655 2322222 2222233333333344445577777876643221 122333334444555566778888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhccCCcchHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000984 123 QVTCWMITGERQATRIRGLYLKTILRQDVAFFDNETNTGEVVGRMSGDTVLIQDAMGEKVGKFLQLMATFLGGFLIAFIK 202 (1198)
Q Consensus 123 ~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~f~~~~~~G~i~~r~s~D~~~i~~~~~~~~~~~~~~~~~~i~~~i~~~~~ 202 (1198)
+.+.....+.++..++|..+++++++.|+.+|+.. ++|++++|++ |++.+++.+...+...+..+..+++.+++++++
T Consensus 196 ~~~~~~~~~~~~~~~l~~~~~~~ll~~~~~~~~~~-~~g~~~~r~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 273 (686)
T TIGR03797 196 QSLAVLRLETRMDASLQAAVWDRLLRLPVSFFRQY-STGDLASRAM-GISQIRRILSGSTLTTLLSGIFALLNLGLMFYY 273 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHCCC-ChhHHHHHHh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888999999999999999999999999874 9999999997 899999998877777777777777788889999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcHHHHHHHHHHHHHHHHHHHHH
Q 000984 203 GWLLTLVMLSSIPLLAMSGGVMAIMISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYKSGVQ 282 (1198)
Q Consensus 203 ~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~ 282 (1198)
+|++++++++++|+++++..++.+..++..++..+..++..+.+.|.++|+++||+++.|+.+..+|.+...+..+...+
T Consensus 274 ~~~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~ 353 (686)
T TIGR03797 274 SWKLALVAVALALVAIAVTLVLGLLQVRKERRLLELSGKISGLTVQLINGISKLRVAGAENRAFARWAKLFSRQRKLELS 353 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhcccHHHHHHHHHHHHHHHHHHHH
Confidence 99999998888888888888888888888888888889999999999999999999999999999999988888887777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 000984 283 EGLAAGIGLGMVMLIVFCSYALSVWYGGKLILEEGYNGGQVVNVMVAVLTGSMSLGEASPCLSAFGAGQAAAFKMFETIN 362 (1198)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~ 362 (1198)
..........+..++..+..++.+++|++++..+.++.|.++++.........++..+...+..+..+..+.+|+.+.++
T Consensus 354 ~~~~~~~~~~~~~~i~~~~~~~il~~g~~lv~~g~ltiG~lva~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~ 433 (686)
T TIGR03797 354 AQRIENLLTVFNAVLPVLTSAALFAAAISLLGGAGLSLGSFLAFNTAFGSFSGAVTQLSNTLISILAVIPLWERAKPILE 433 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 77666665555555666667777888999999999999999887766666667788888888899999999999999987
Q ss_pred cCCCCCccCCCCcccCCCcccEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCe
Q 000984 363 RKPEIDAYDTKGKILDDIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGE 442 (1198)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~g~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~ 442 (1198)
.+++.+... ..+.+..+.|+++||+|+|+.. ++++|+|+||+|+|||++||||+||||||||+++|+|+|+|++|+
T Consensus 434 ~~~e~~~~~---~~~~~~~~~I~~~nvsf~Y~~~-~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~ 509 (686)
T TIGR03797 434 ALPEVDEAK---TDPGKLSGAIEVDRVTFRYRPD-GPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGS 509 (686)
T ss_pred CCcccccCc---CCCCCCCceEEEEEEEEEcCCC-CccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCE
Confidence 655432111 1112235679999999999743 367999999999999999999999999999999999999999999
Q ss_pred EEECCeecCCcCHHHHhcceEEEcCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCC
Q 000984 443 VLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQ 522 (1198)
Q Consensus 443 i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~ 522 (1198)
|.+||+|+++++.+++|++|+||||||++|+|||||||.++.| .++++++++++.++++++++++|+|+||.+||+|.+
T Consensus 510 I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTI~eNi~~~~~-~~~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~ 588 (686)
T TIGR03797 510 VFYDGQDLAGLDVQAVRRQLGVVLQNGRLMSGSIFENIAGGAP-LTLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGT 588 (686)
T ss_pred EEECCEEcCcCCHHHHHhccEEEccCCccCcccHHHHHhcCCC-CCHHHHHHHHHHcCcHHHHHhccccccccccCCCCC
Confidence 9999999999999999999999999999999999999999988 899999999999999999999999999999999999
Q ss_pred CChHHHHHHhHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhCCCeEEEEecCcchhhccCEEEEEeCCEEEEec
Q 000984 523 LSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKG 602 (1198)
Q Consensus 523 lSgGqkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g 602 (1198)
|||||||||+||||++++|+|||||||||+||+++++.+.+.+++. ++|+|+||||+++++.||+|++|++|+|+|.|
T Consensus 589 LSGGQrQRialARAll~~p~iLiLDEpTS~LD~~te~~i~~~L~~~--~~T~IiItHr~~~i~~~D~Iivl~~G~iv~~G 666 (686)
T TIGR03797 589 LSGGQRQRLLIARALVRKPRILLFDEATSALDNRTQAIVSESLERL--KVTRIVIAHRLSTIRNADRIYVLDAGRVVQQG 666 (686)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHh--CCeEEEEecChHHHHcCCEEEEEECCEEEEEC
Confidence 9999999999999999999999999999999999999999999886 68999999999999999999999999999999
Q ss_pred ChhhHhcCCCchhHHHHHH
Q 000984 603 THSKLVEDPEGAYSQLIRL 621 (1198)
Q Consensus 603 ~~~~l~~~~~~~~~~~~~~ 621 (1198)
+|+||+++ ++.|+++++.
T Consensus 667 ~~~~Ll~~-~~~y~~l~~~ 684 (686)
T TIGR03797 667 TYDELMAR-EGLFAQLARR 684 (686)
T ss_pred CHHHHHhC-CcHHHHHHHh
Confidence 99999986 7889988764
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif |
| >TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-78 Score=812.35 Aligned_cols=569 Identities=20% Similarity=0.282 Sum_probs=455.7
Q ss_pred ccchHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 000984 42 ESVPFYKLFTFADSADTALMIIGSIGAIGNGLCLPLMTLLFGDLINTFGDNQNNSETVDKVSKVAVKFVYLGIGSGIASF 121 (1198)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 121 (1198)
+.+++..|+.|++..++...++.+++.++..++..+.++|++.|.+.-...... .....+..+|++++++..++.+
T Consensus 948 g~v~~~~y~~Y~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~w~~~~~~~~~~----~~~~~~~~iy~~l~i~~~~~~~ 1023 (1522)
T TIGR00957 948 GQVELSVYWDYMKAIGLFITFLSIFLFVCNHVSALASNYWLSLWTDDPMVNGTQ----NNTSLRLSVYGALGILQGFAVF 1023 (1522)
T ss_pred CcccHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCC----CCcchHHHHHHHHHHHHHHHHH
Confidence 445556666666554433333333333333344444555666665532111011 0011233356667777777778
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhccCCcchHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000984 122 LQVTCWMITGERQATRIRGLYLKTILRQDVAFFDNETNTGEVVGRMSGDTVLIQDAMGEKVGKFLQLMATFLGGFLIAFI 201 (1198)
Q Consensus 122 ~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~f~~~~~~G~i~~r~s~D~~~i~~~~~~~~~~~~~~~~~~i~~~i~~~~ 201 (1198)
+..+++.+.+.+++.++|..++++++++|++||++ +++|+++||+++|++.+++.++..+..++..++.+++.++++++
T Consensus 1024 ~~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ff~~-~~~G~ilnR~s~Di~~id~~l~~~~~~~~~~~~~~i~~li~~~~ 1102 (1522)
T TIGR00957 1024 GYSMAVSIGGIQASRVLHQDLLHNKLRSPMSFFER-TPSGNLVNRFSKELDTVDSMIPPVIKMFMGSLFNVIGALIVILL 1102 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCChhHhcc-CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 87888888899999999999999999999999997 59999999999999999999999999999999999999888888
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcHHHHHHHHHHHHHHHHHHHH
Q 000984 202 KGWLLTLVMLSSIPLLAMSGGVMAIMISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYKSGV 281 (1198)
Q Consensus 202 ~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~ 281 (1198)
.+|++++++++++++++++..++.+..++..+......++..+++.|+++|+++||+|++|+.+.+++.+..+...+...
T Consensus 1103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~s~l~~~~~E~l~Gi~tIraf~~~~~f~~~~~~~~~~~~~~~~ 1182 (1522)
T TIGR00957 1103 ATPIAAVIIPPLGLLYFFVQRFYVASSRQLKRLESVSRSPVYSHFNETLLGVSVIRAFEEQERFIHQSDLKVDENQKAYY 1182 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCCcHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 88877766666666666666666666666666667778899999999999999999999999999999888777766654
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000984 282 QEGLAAGIGLGMVMLIVFCSYALSVWYGGKLIL-EEGYNGGQVVNVMVAVLTGSMSLGEASPCLSAFGAGQAAAFKMFET 360 (1198)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~-~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~r~~~~ 360 (1198)
.......+......++.. ++.++.+...+. .+.+++|.+...+.+.+....++..+...+..+..+..+++|+.++
T Consensus 1183 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~v~~~~~~~~g~l~~~l~~~~~~~~~l~~l~~~~~~~e~~~~s~eRi~~~ 1259 (1522)
T TIGR00957 1183 PSIVANRWLAVRLECVGN---CIVLFAALFAVISRHSLSAGLVGLSVSYSLQVTFYLNWLVRMSSEMETNIVAVERLKEY 1259 (1522)
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 433222221111111111 111222222232 4668888887777777777778888888899999999999999999
Q ss_pred HccCCCCCcc--CCCCcccCCCcccEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCC
Q 000984 361 INRKPEIDAY--DTKGKILDDIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDP 438 (1198)
Q Consensus 361 ~~~~~~~~~~--~~~~~~~~~~~g~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~ 438 (1198)
++.++|.+.. .......++.+|.|+|+||+|+|+.+ .+++|+|+||+|+|||++|||||||||||||+++|+|+++|
T Consensus 1260 ~~~~~e~~~~~~~~~~~~~wp~~g~I~f~nVsf~Y~~~-~~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~~ 1338 (1522)
T TIGR00957 1260 SETEKEAPWQIQETAPPSGWPPRGRVEFRNYCLRYRED-LDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINES 1338 (1522)
T ss_pred hcCCCCccccccCCCCCCCCCCCCcEEEEEEEEEeCCC-CcccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCccC
Confidence 9766553211 11111234567899999999999754 25799999999999999999999999999999999999999
Q ss_pred CCCeEEECCeecCCcCHHHHhcceEEEcCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcC
Q 000984 439 QAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGE 518 (1198)
Q Consensus 439 ~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~ 518 (1198)
++|+|.|||+|+++++++++|++|++|||||.||+||||+||+.. .++++++++++++.+++++++.++|+|+||.+||
T Consensus 1339 ~~G~I~IdG~dI~~i~~~~LR~~i~iVpQdp~LF~gTIr~NLdp~-~~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e 1417 (1522)
T TIGR00957 1339 AEGEIIIDGLNIAKIGLHDLRFKITIIPQDPVLFSGSLRMNLDPF-SQYSDEEVWWALELAHLKTFVSALPDKLDHECAE 1417 (1522)
T ss_pred CCCeEEECCEEccccCHHHHHhcCeEECCCCcccCccHHHHcCcc-cCCCHHHHHHHHHHcCcHHHHhhCccCCCceecC
Confidence 999999999999999999999999999999999999999999943 3689999999999999999999999999999999
Q ss_pred CCCCCChHHHHHHhHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhCCCeEEEEecCcchhhccCEEEEEeCCEE
Q 000984 519 HGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKI 598 (1198)
Q Consensus 519 ~g~~lSgGqkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i 598 (1198)
+|.+||||||||+|||||++++|+|||||||||+||++|++.|++.|++.++++|+|+||||++++.+||||+||++|+|
T Consensus 1418 ~G~~LSgGQrQrl~LARALLr~~~ILiLDEaTSalD~~Te~~Iq~~l~~~~~~~TvI~IAHRl~ti~~~DrIlVld~G~I 1497 (1522)
T TIGR00957 1418 GGENLSVGQRQLVCLARALLRKTKILVLDEATAAVDLETDNLIQSTIRTQFEDCTVLTIAHRLNTIMDYTRVIVLDKGEV 1497 (1522)
T ss_pred CCCcCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHhCCEEEEEECCEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecChhhHhcCCCchhHHHHHH
Q 000984 599 VEKGTHSKLVEDPEGAYSQLIRL 621 (1198)
Q Consensus 599 ~~~g~~~~l~~~~~~~~~~~~~~ 621 (1198)
+|.|+|+||+++ ++.|+++++.
T Consensus 1498 vE~G~~~eLl~~-~~~f~~l~~~ 1519 (1522)
T TIGR00957 1498 AEFGAPSNLLQQ-RGIFYSMAKD 1519 (1522)
T ss_pred EEECCHHHHHhC-CCHHHHHHHH
Confidence 999999999987 6899998864
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. |
| >KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-79 Score=712.70 Aligned_cols=465 Identities=33% Similarity=0.521 Sum_probs=436.3
Q ss_pred hhHhhhhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000984 706 PTRRLAYLNKPEIPVILAGTIAAMANGVILPIYGLLISSVIETFFKPPHELKKDSRFWALIYLALGAGSFLLSPAQSYFF 785 (1198)
Q Consensus 706 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 (1198)
.+++++.+.+++++++..++++.++......+.|++++.++|....... ......-.+.++.++.++..++.+++.+++
T Consensus 134 ~~~rl~~l~~~~~~~l~~a~~~l~vss~~~~~iP~~~G~~id~~~~~~~-~~~~~~~~~~~l~~l~~~~a~~~~~r~~~~ 212 (716)
T KOG0058|consen 134 LLKRLLGLLKPEWKWLVAAFVLLLVSSLINMFIPYYLGKLIDTISEGDD-SADALKRACTILLGLFLIGALANAIRGGLL 212 (716)
T ss_pred HHHHHHHHhchhHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhccc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5778899999999999999999999999999999999999998875111 112223345566677888899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCcccccccCCCChhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 000984 786 AVAGNKLIQRIRSMCFEKVIHMEVSWFDEPEHSSGAIGARLSADAASVRALVGDALARIVQNISTAAAGLIIAFTASWQL 865 (1198)
Q Consensus 786 ~~~~~~~~~~Lr~~l~~~ll~~p~~fFd~~~~~~G~i~~r~s~D~~~i~~~l~~~l~~~i~~~~~~i~~li~~~~~~~~l 865 (1198)
..++.++..++|..+|+++++++++||| .|.+|+|++|++.|+..+.+.++..+...+.+.++.++++++|++++|+|
T Consensus 213 ~~a~~rv~~rlR~~lF~sil~QdiaFFD--~nktGeL~SRLtsD~~~vs~svs~nls~~lR~~~~~~g~~~~M~~~S~~L 290 (716)
T KOG0058|consen 213 QYAGERVVARLRTDLFRSLLRQDIAFFD--ENKTGELISRLTSDTQIVSNSVSQNLSDGLRNLVQGFGGLGFMFSLSWRL 290 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhc--cCCccHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhHHH
Confidence 9999999999999999999999999999 58899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhchhHHHHHhcchHHHHHHHHHHhhhHHHHhHHHHHH
Q 000984 866 ALIILVMLPLIGVSGYTQMKFMKGFSADAKMKYEEASQVANDAVGSIRTVASFCAEEKVMQLYKKKCEAPMKTGIRQGMV 945 (1198)
Q Consensus 866 ~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~~ 945 (1198)
+++.++.+|++.++..++.+++++.+++.|++.++++....|.+.+++|||+|+.|+++.++|.+..+...+...|....
T Consensus 291 tlv~~i~~P~v~~~~~~yG~~~rklS~~~Q~a~A~a~~vaeE~ls~~rTVRsfa~E~~E~~ry~~~l~~~~~i~~k~a~a 370 (716)
T KOG0058|consen 291 TLVTLIVVPIVALVAKIYGKYLRKLSKQTQDALARANQVAEEVLSAMRTVRSFAAEEQEVKRYNKKLREVLKLSKKEAVA 370 (716)
T ss_pred HHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhcCCCC
Q 000984 946 SGGGFGASFFLLFAFYAASFYAGARLVEDGKATFSDVFKVFFSLTMTAIGISQSSSFSSDSNKAKSAAASIFAIIDRESK 1025 (1198)
Q Consensus 946 ~~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~~t~g~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~~~~~ 1025 (1198)
.+.+++...+..++..+.++++|++++..|.+|.|++++|++|...++.++..+..+..++.++..+.+|++|++|.+|.
T Consensus 371 ~~~f~~~~~~~~~~~~~siL~~Gg~Lv~~g~mt~g~L~sFllY~~~~g~sl~~ls~~ys~lmkgvGAs~rvFel~dr~P~ 450 (716)
T KOG0058|consen 371 YGIFFGSTNLLGNLAVLSILFYGGHLVLTGSLTSGALSSFLLYQVQLGSSLSGLSSFYSELMKGVGASERVFELMDRKPR 450 (716)
T ss_pred hhHhHhHHHHHHhHHHHHHHHhccchhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCCCCCCCcccCCcccEEEeeeeEECCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEEC
Q 000984 1026 IDPSDESGTILEDVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLD 1105 (1198)
Q Consensus 1026 ~~~~~~~~~~~~~~~G~I~f~nVsf~Y~~~~~~~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~ID 1105 (1198)
.++. +...+...+|.|+|+||+|+||.||+.+||||+||+|+|||+||+||||||||||+++||+|||||++|+|++|
T Consensus 451 i~~~--G~~~p~~~~G~IeF~~VsFaYP~Rp~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~PtsG~IllD 528 (716)
T KOG0058|consen 451 IPLT--GTLAPDHLQGVIEFEDVSFAYPTRPDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPTSGRILLD 528 (716)
T ss_pred CCCC--CccccccccceEEEEEeeeecCCCCCchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEEC
Confidence 7654 22222257899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccCCCChHHHHhhcceeccccccccccHHHHHhcCCCCCCCHHHHHHHHHHcchHHHHHhcccccccee
Q 000984 1106 GVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQVRTSRL 1176 (1198)
Q Consensus 1106 G~dI~~i~l~~LR~~IsiV~Qdp~LF~gTIreNI~~g~~~~~tdeei~~Al~~A~l~dfI~~LP~g~dt~v 1176 (1198)
|+||++++.++||++|++|.|||+||+|||+|||+||.+ ++|||||.+|||+||+||||+++|+||||.|
T Consensus 529 G~~i~~~~~~~lr~~Ig~V~QEPvLFs~sI~eNI~YG~~-~~t~e~i~~AAk~ANah~FI~~~p~gY~T~V 598 (716)
T KOG0058|consen 529 GVPISDINHKYLRRKIGLVGQEPVLFSGSIRENIAYGLD-NATDEEIEAAAKMANAHEFITNFPDGYNTVV 598 (716)
T ss_pred CeehhhcCHHHHHHHeeeeeccceeecccHHHHHhcCCC-CCCHHHHHHHHHHhChHHHHHhCcccccccc
Confidence 999999999999999999999999999999999999965 8999999999999999999999999999987
|
|
| >PLN03130 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-78 Score=803.81 Aligned_cols=569 Identities=20% Similarity=0.278 Sum_probs=429.7
Q ss_pred ccccchHHHHHHhhchhhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCchhhHHHHHHHHHHHHHHHHHHHH
Q 000984 40 KTESVPFYKLFTFADSADTA-LMIIGSIGAIGNGLCLPLMTLLFGDLINTFGDNQNNSETVDKVSKVAVKFVYLGIGSGI 118 (1198)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 118 (1198)
..+.+++..|.+|++..+.. ++++.+++.++..++....++|++.|.+....... ....+..+|++++++..+
T Consensus 895 ~~g~v~~~vy~~Y~~~~g~~~~~~~~~~~~~~~~~~~~~~~~wl~~w~~~~~~~~~------~~~~~~~i~~~l~~~~~i 968 (1622)
T PLN03130 895 ETGVVSWKVLERYKNALGGAWVVMILFLCYVLTEVFRVSSSTWLSEWTDQGTPKTH------GPLFYNLIYALLSFGQVL 968 (1622)
T ss_pred hcCccCHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCC------chhHHHHHHHHHHHHHHH
Confidence 34455666677776543221 22222222333333333444555555553211111 112234456667777788
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhccCCcchHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000984 119 ASFLQVTCWMITGERQATRIRGLYLKTILRQDVAFFDNETNTGEVVGRMSGDTVLIQDAMGEKVGKFLQLMATFLGGFLI 198 (1198)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~f~~~~~~G~i~~r~s~D~~~i~~~~~~~~~~~~~~~~~~i~~~i~ 198 (1198)
+.+++.+++.+.+.+++.++|.+++++++++|++|||+ +++|+|+||+++|++.+++.++..+..++..+..+++.+++
T Consensus 969 ~~~~~~~~~~~~~~~~~~~L~~~l~~~ll~~p~~ffd~-~~~G~IlnR~s~Di~~id~~l~~~~~~~~~~~~~~i~~~i~ 1047 (1622)
T PLN03130 969 VTLLNSYWLIMSSLYAAKRLHDAMLGSILRAPMSFFHT-NPLGRIINRFAKDLGDIDRNVAVFVNMFLGQIFQLLSTFVL 1047 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhcc-CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888999999999999999999999999997 59999999999999999999999999999988888888888
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcHHHHHHHHHHHHHHHHH
Q 000984 199 AFIKGWLLTLVMLSSIPLLAMSGGVMAIMISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYK 278 (1198)
Q Consensus 199 ~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~ 278 (1198)
++++.|...+++++++.+++.+..++.+..++..+......++..+++.|+++|+++||+|++++++.+.+.+..+...+
T Consensus 1048 i~~~~~~~~~~~~pl~~~~~~~~~~~~~~~r~~~r~~~~~~s~~~~~~~Etl~Gi~tIraf~~~~~f~~~~~~~~~~~~~ 1127 (1622)
T PLN03130 1048 IGIVSTISLWAIMPLLVLFYGAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMAEINGRSMDNNIR 1127 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHhCCHHHHHhCcHHHHHHHHHHHHHHHHHH
Confidence 77777744333322222222233344444455555555667888999999999999999999999888777766655544
Q ss_pred HHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000984 279 SGVQEG---LAAGIGLGMVMLIVFCSYALSVWYGGKLILEEG-YN-----GGQVVNVMVAVLTGSMSLGEASPCLSAFGA 349 (1198)
Q Consensus 279 ~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~-~~-----~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~ 349 (1198)
...... .+.+....+.. .+++++.+...+..+. .. .+.+..++.+.+.....+..+......+..
T Consensus 1128 ~~~~~~~~~~wl~~~l~~~~------~~~i~~~~~~~v~~~~~~~~~~~~~~~~G~~ls~~~~~~~~l~~l~~~~~~~e~ 1201 (1622)
T PLN03130 1128 FTLVNMSSNRWLAIRLETLG------GLMIWLTASFAVMQNGRAENQAAFASTMGLLLSYALNITSLLTAVLRLASLAEN 1201 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHcccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333222 12222111111 1111111112222221 11 122222222233333445555556667788
Q ss_pred HHHHHHHHHHHHccCCCCCccC--CCCcccCCCcccEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHH
Q 000984 350 GQAAAFKMFETINRKPEIDAYD--TKGKILDDIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKST 427 (1198)
Q Consensus 350 ~~~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~~g~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSt 427 (1198)
...+.+|+.++++.++|.+... ..+.+.++.+|.|+|+||+|+|+.+ .+++|+|+||+|+|||++||||||||||||
T Consensus 1202 ~~~sveRi~e~~~~~~E~~~~~~~~~~~~~wp~~g~I~f~nVsf~Y~~~-~~~VL~~is~~I~~GekVaIVGrSGSGKST 1280 (1622)
T PLN03130 1202 SLNAVERVGTYIDLPSEAPLVIENNRPPPGWPSSGSIKFEDVVLRYRPE-LPPVLHGLSFEISPSEKVGIVGRTGAGKSS 1280 (1622)
T ss_pred HHHHHHHHHHHhCCCCcccccccCCCCCCCCCCCCcEEEEEEEEEeCCC-CCceecceeEEEcCCCEEEEECCCCCCHHH
Confidence 9999999999987765532211 1112234556889999999999643 357999999999999999999999999999
Q ss_pred HHHHHhccCCCCCCeEEECCeecCCcCHHHHhcceEEEcCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHh
Q 000984 428 VISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDK 507 (1198)
Q Consensus 428 l~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~ 507 (1198)
|+++|+|+++|++|+|.|||+|+++++++++|++|++|||||.||+|||||||+++. ++++++++++++.+++++++++
T Consensus 1281 Ll~lL~rl~~p~~G~I~IDG~dI~~i~l~~LR~~IsiVpQdp~LF~GTIreNLd~~~-~~tdeei~~Al~~a~l~~~I~~ 1359 (1622)
T PLN03130 1281 MLNALFRIVELERGRILIDGCDISKFGLMDLRKVLGIIPQAPVLFSGTVRFNLDPFN-EHNDADLWESLERAHLKDVIRR 1359 (1622)
T ss_pred HHHHHhCcCCCCCceEEECCEecccCCHHHHHhccEEECCCCccccccHHHHhCcCC-CCCHHHHHHHHHHcCcHHHHHh
Confidence 999999999999999999999999999999999999999999999999999999875 5799999999999999999999
Q ss_pred CCCCccchhcCCCCCCChHHHHHHhHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhCCCeEEEEecCcchhhcc
Q 000984 508 LPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNA 587 (1198)
Q Consensus 508 l~~g~~t~v~~~g~~lSgGqkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~~ 587 (1198)
+|+|+||.+||+|.+|||||||||||||||+++|+|||||||||+||++|++.|++.|++.+++||+|+||||++++.+|
T Consensus 1360 lp~GLdt~Vge~G~nLSgGQrQrlaLARALLr~p~ILILDEATSaLD~~Te~~Iq~~I~~~~~~~TvI~IAHRL~tI~~~ 1439 (1622)
T PLN03130 1360 NSLGLDAEVSEAGENFSVGQRQLLSLARALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDC 1439 (1622)
T ss_pred CccccCccccCCCCCCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEeCChHHHHhC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEEeCCEEEEecChhhHhcCCCchhHHHHHHHh
Q 000984 588 DMIAVIHRGKIVEKGTHSKLVEDPEGAYSQLIRLQE 623 (1198)
Q Consensus 588 d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~~ 623 (1198)
|||+||++|+|+|.|+|+||++++++.|+++++...
T Consensus 1440 DrIlVLd~G~IvE~Gt~~eLl~~~~g~f~~L~~~~~ 1475 (1622)
T PLN03130 1440 DRILVLDAGRVVEFDTPENLLSNEGSAFSKMVQSTG 1475 (1622)
T ss_pred CEEEEEECCEEEEeCCHHHHHhCCCCHHHHHHHHcC
Confidence 999999999999999999999876789999987543
|
|
| >TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-77 Score=754.83 Aligned_cols=565 Identities=28% Similarity=0.410 Sum_probs=473.1
Q ss_pred chHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000984 44 VPFYKLFTFADSADTALMIIGSIGAIGNGLCLPLMTLLFGDLINTFGDNQNNSETVDKVSKVAVKFVYLGIGSGIASFLQ 123 (1198)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 123 (1198)
.++..++.+..+....+ +..+++.++..++....|++++.++|....... .+.+......++++.++..++.+++
T Consensus 142 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~p~~~~~iiD~v~~~~~----~~~l~~~~~~~~~~~~~~~~~~~~~ 216 (708)
T TIGR01193 142 NSLLKFIPLITRQKKLI-VNIVIAAIIVTLISIAGSYYLQKIIDTYIPHKM----MGTLGIISIGLIIAYIIQQILSYIQ 216 (708)
T ss_pred chHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC----hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666655433322 222333333334444555677788887653321 1222222333344455566778888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhccCCcchHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000984 124 VTCWMITGERQATRIRGLYLKTILRQDVAFFDNETNTGEVVGRMSGDTVLIQDAMGEKVGKFLQLMATFLGGFLIAFIKG 203 (1198)
Q Consensus 124 ~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~f~~~~~~G~i~~r~s~D~~~i~~~~~~~~~~~~~~~~~~i~~~i~~~~~~ 203 (1198)
.++..+.+.+...++|..+++++++.|+.+|++. ++|++++|++ |++.+.+.+.......+..+..+++.++++++++
T Consensus 217 ~~~~~~~~~~~~~~l~~~~~~~ll~l~~~~f~~~-~~G~~~~r~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 294 (708)
T TIGR01193 217 IFLLNVLGQRLSIDIILSYIKHLFELPMSFFSTR-RTGEIVSRFT-DASSIIDALASTILSLFLDMWILVIVGLFLVRQN 294 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCCC-chhHHHHHhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 8888889999999999999999999999999874 9999999998 9999999888777777777777777778888999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHH
Q 000984 204 WLLTLVMLSSIPLLAMSGGVMAIMISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYKSGVQE 283 (1198)
Q Consensus 204 ~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~ 283 (1198)
|++++++++.+|+++++..++.+..++..++.++..++..+.+.|.++|+++||++++|+.+.+++.+...+..+...+.
T Consensus 295 ~~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~ 374 (708)
T TIGR01193 295 MLLFLLSLLSIPVYAVIIILFKRTFNKLNHDAMQANAVLNSSIIEDLNGIETIKSLTSEAERYSKIDSEFGDYLNKSFKY 374 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999998888888999999988888899999999999999999999999999999999998888777776666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Q 000984 284 GLAAGIGLGMVMLIVFCSYALSVWYGGKLILEEGYNGGQVVNVMVAVLTGSMSLGEASPCLSAFGAGQAAAFKMFETINR 363 (1198)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~ 363 (1198)
....+....+..++..+..++++++|+.++..+.++.|.++++.........++..+...+..+..+..+.+|+.+.++.
T Consensus 375 ~~~~~~~~~~~~~~~~~~~i~il~~g~~lv~~g~ls~G~lva~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~ 454 (708)
T TIGR01193 375 QKADQGQQAIKAVTKLILNVVILWTGAYLVMRGKLTLGQLITFNALLSYFLTPLENIINLQPKLQAARVANNRLNEVYLV 454 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 66555555455555556667778889999999999999998877666666678888888889999999999999999876
Q ss_pred CCCCCccCCCCcccCCCcccEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeE
Q 000984 364 KPEIDAYDTKGKILDDIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 443 (1198)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~g~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i 443 (1198)
++|.+.... ....++..+.|+++||+|+|+. ++++|+|+||+|++||+++|+||||||||||+++|+|+|+|++|+|
T Consensus 455 ~~e~~~~~~-~~~~~~~~~~I~~~~vsf~y~~--~~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~~G~I 531 (708)
T TIGR01193 455 DSEFINKKK-RTELNNLNGDIVINDVSYSYGY--GSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEI 531 (708)
T ss_pred CCccccccc-ccCCCCCCCcEEEEEEEEEcCC--CCcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCCcEE
Confidence 554322111 0112234578999999999973 3579999999999999999999999999999999999999999999
Q ss_pred EECCeecCCcCHHHHhcceEEEcCCCCCCcccHHHHHhcC-CCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCC
Q 000984 444 LIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYG-KDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQ 522 (1198)
Q Consensus 444 ~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~Ni~~~-~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~ 522 (1198)
.+||+|+++++.+++|++|+||||||++|+|||||||.++ .++.++++++++++.++++++++++|+|+||.+||+|.+
T Consensus 532 ~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTI~eNi~l~~~~~~~~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~ 611 (708)
T TIGR01193 532 LLNGFSLKDIDRHTLRQFINYLPQEPYIFSGSILENLLLGAKENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSS 611 (708)
T ss_pred EECCEEHHHcCHHHHHHheEEEecCceehhHHHHHHHhccCCCCCCHHHHHHHHHHhCCHHHHHhcccccCcEecCCCCC
Confidence 9999999999999999999999999999999999999998 577899999999999999999999999999999999999
Q ss_pred CChHHHHHHhHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhCCCeEEEEecCcchhhccCEEEEEeCCEEEEec
Q 000984 523 LSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKG 602 (1198)
Q Consensus 523 lSgGqkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g 602 (1198)
|||||||||+||||++++|+|||||||||+||+++++.+.+.+++. +++|+|+||||+++++.||+|++|++|++++.|
T Consensus 612 LSgGQrQRialARall~~p~iliLDE~Ts~LD~~te~~i~~~L~~~-~~~T~IiitHr~~~~~~~D~i~~l~~G~i~~~G 690 (708)
T TIGR01193 612 ISGGQKQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNLLNL-QDKTIIFVAHRLSVAKQSDKIIVLDHGKIIEQG 690 (708)
T ss_pred CCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHh-cCCEEEEEecchHHHHcCCEEEEEECCEEEEEC
Confidence 9999999999999999999999999999999999999999999875 789999999999999999999999999999999
Q ss_pred ChhhHhcCCCchhHHHHH
Q 000984 603 THSKLVEDPEGAYSQLIR 620 (1198)
Q Consensus 603 ~~~~l~~~~~~~~~~~~~ 620 (1198)
+|+||+++ ++.|+++++
T Consensus 691 ~~~~L~~~-~~~y~~l~~ 707 (708)
T TIGR01193 691 SHDELLDR-NGFYASLIH 707 (708)
T ss_pred CHHHHHhc-CCcHHHHhh
Confidence 99999987 688888763
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc. |
| >TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-77 Score=755.93 Aligned_cols=561 Identities=25% Similarity=0.360 Sum_probs=471.6
Q ss_pred HHHHHHhhchhhH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000984 46 FYKLFTFADSADT--ALMIIGSIGAIGNGLCLPLMTLLFGDLINTFGDNQNNSETVDKVSKVAVKFVYLGIGSGIASFLQ 123 (1198)
Q Consensus 46 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 123 (1198)
++.++.+..+... ...+++.++..+..++. |++.+.++|........ .........++++.++..++.+++
T Consensus 142 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~---p~~~~~iid~v~~~~~~----~~l~~~~~~~~~~~~~~~~~~~~~ 214 (710)
T TIGR03796 142 LRALWRRLRGSRGALLYLLLAGLLLVLPGLVI---PAFSQIFVDEILVQGRQ----DWLRPLLLGMGLTALLQGVLTWLQ 214 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHhhcCCh----hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555443322 22333333333334444 44667777765432211 112223333444455567778888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhccCCcchHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000984 124 VTCWMITGERQATRIRGLYLKTILRQDVAFFDNETNTGEVVGRMSGDTVLIQDAMGEKVGKFLQLMATFLGGFLIAFIKG 203 (1198)
Q Consensus 124 ~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~f~~~~~~G~i~~r~s~D~~~i~~~~~~~~~~~~~~~~~~i~~~i~~~~~~ 203 (1198)
.+.....+.++..++|..+++++++.|+++|++. ++|++++|++.| +.+.+.+...+...+..+..+++.++++++++
T Consensus 215 ~~~~~~~~~~~~~~l~~~~~~~ll~l~~~~~~~~-~~g~~~~r~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 292 (710)
T TIGR03796 215 LYYLRRLQIKLAVGMSARFLWHILRLPVRFFAQR-HAGDIASRVQLN-DQVAEFLSGQLATTALDAVMLVFYALLMLLYD 292 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHcCC-cccHHHHHhhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888889999999999999999999999999875 999999999988 68999988888888888888888889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHH
Q 000984 204 WLLTLVMLSSIPLLAMSGGVMAIMISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYKSGVQE 283 (1198)
Q Consensus 204 ~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~ 283 (1198)
|++++++++++|+.+++..++.+..++..++.++..++..+.+.|.++|+++||++++|+.+.++|.+...+..+...+.
T Consensus 293 ~~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~ 372 (710)
T TIGR03796 293 PVLTLIGIAFAAINVLALQLVSRRRVDANRRLQQDAGKLTGVAISGLQSIETLKASGLESDFFSRWAGYQAKLLNAQQEL 372 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHccCCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999998888888888888888888888899999999999999999999999999999998888877777776
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Q 000984 284 GLAAGIGLGMVMLIVFCSYALSVWYGGKLILEEGYNGGQVVNVMVAVLTGSMSLGEASPCLSAFGAGQAAAFKMFETINR 363 (1198)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~ 363 (1198)
.........+..++..+..++.+++|++++..+.++.|.++++.........++..+...+..+..+..+.+|+.++++.
T Consensus 373 ~~~~~~~~~~~~~i~~~~~~~il~~g~~~v~~g~lt~G~lva~~~l~~~~~~p~~~l~~~~~~~~~~~~~~~ri~~il~~ 452 (710)
T TIGR03796 373 GVLTQILGVLPTLLTSLNSALILVVGGLRVMEGQLTIGMLVAFQSLMSSFLEPVNNLVGFGGTLQELEGDLNRLDDVLRN 452 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 66666655555566666677778889999999999999998877666666678888888889999999999999999877
Q ss_pred CCCCCccCC---C-Cccc-CCCcccEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCC
Q 000984 364 KPEIDAYDT---K-GKIL-DDIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDP 438 (1198)
Q Consensus 364 ~~~~~~~~~---~-~~~~-~~~~g~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~ 438 (1198)
+++.+.... . .... +...+.|+++||+|+|+.. ++++|+|+||+|++||+++||||||||||||+++|+|+|+|
T Consensus 453 ~~e~~~~~~~~~~~~~~~~~~~~~~I~~~~vsf~y~~~-~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p 531 (710)
T TIGR03796 453 PVDPLLEEEEAPAAGSEPSPRLSGYVELRNITFGYSPL-EPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQP 531 (710)
T ss_pred CCccccccccccccccccCCCCCCeEEEEEEEEecCCC-CCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 554322110 0 0111 2335789999999999853 36799999999999999999999999999999999999999
Q ss_pred CCCeEEECCeecCCcCHHHHhcceEEEcCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcC
Q 000984 439 QAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGE 518 (1198)
Q Consensus 439 ~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~ 518 (1198)
++|+|.+||+|+++++.+++|++|+||||+|++|+|||||||.++.|+.++++++++++.+++++++.++|+|++|.+||
T Consensus 532 ~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTi~eNi~l~~~~~~~~~i~~al~~~~l~~~i~~lp~gl~t~i~e 611 (710)
T TIGR03796 532 WSGEILFDGIPREEIPREVLANSVAMVDQDIFLFEGTVRDNLTLWDPTIPDADLVRACKDAAIHDVITSRPGGYDAELAE 611 (710)
T ss_pred CCcEEEECCEeHHHCCHHHHHhheeEEecCChhhhccHHHHhhCCCCCCCHHHHHHHHHHhCCHHHHHhCcCcccceecc
Confidence 99999999999999999999999999999999999999999999988899999999999999999999999999999999
Q ss_pred CCCCCChHHHHHHhHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhCCCeEEEEecCcchhhccCEEEEEeCCEE
Q 000984 519 HGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKI 598 (1198)
Q Consensus 519 ~g~~lSgGqkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i 598 (1198)
+|.+|||||||||+||||++++|+|||||||||+||+++++.+.+.+++ .++|+|+||||+++++.||+|++|++|+|
T Consensus 612 ~G~~LSGGQrQRiaLARall~~p~iliLDEptS~LD~~te~~i~~~l~~--~~~T~IiitHrl~~i~~~D~Iivl~~G~i 689 (710)
T TIGR03796 612 GGANLSGGQRQRLEIARALVRNPSILILDEATSALDPETEKIIDDNLRR--RGCTCIIVAHRLSTIRDCDEIIVLERGKV 689 (710)
T ss_pred CCCCCCHHHHHHHHHHHHHhhCCCEEEEECccccCCHHHHHHHHHHHHh--cCCEEEEEecCHHHHHhCCEEEEEeCCEE
Confidence 9999999999999999999999999999999999999999999999986 58999999999999999999999999999
Q ss_pred EEecChhhHhcCCCchhHHHH
Q 000984 599 VEKGTHSKLVEDPEGAYSQLI 619 (1198)
Q Consensus 599 ~~~g~~~~l~~~~~~~~~~~~ 619 (1198)
++.|+|+||+++ ++.|++++
T Consensus 690 ~~~G~~~~Ll~~-~~~y~~l~ 709 (710)
T TIGR03796 690 VQRGTHEELWAV-GGAYARLI 709 (710)
T ss_pred EEecCHHHHHHc-CCcHHHHh
Confidence 999999999986 67888765
|
This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin. |
| >COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-76 Score=675.67 Aligned_cols=548 Identities=26% Similarity=0.409 Sum_probs=458.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000984 68 AIGNGLCLPLMTLLFGDLINTFGDNQNNSETVDKVSKVAVKFVYLGIGSGIASFLQVTCWMITGERQATRIRGLYLKTIL 147 (1198)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll 147 (1198)
..+.+++.....+++...++.+..... ...+..+...++++.++..+..+.+.......+.++...+|..+++++.
T Consensus 9 ~~l~~i~~i~qa~llA~~l~~l~~~~~----~~~l~~~~~~l~~~~~lRa~l~~~~~~~~~~aa~~~~~~LR~~~l~~l~ 84 (559)
T COG4988 9 AVLSGIAIIAQAALLADILTKLIEGQL----FQSLLPLLILLLIALVLRAFLAWLRERLGYRAAAKVRASLRQLVLDKLA 84 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccc----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444455555555443211 1222333344445555667777777777777788888999999999999
Q ss_pred hCChhhhhccCCcchHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 000984 148 RQDVAFFDNETNTGEVVGRMSGDTVLIQDAMGEKVGKFLQLMATFLGGFLIAFIKGWLLTLVMLSSIPLLAMSGGVMAIM 227 (1198)
Q Consensus 148 ~~~~~~f~~~~~~G~i~~r~s~D~~~i~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~ 227 (1198)
+.++.+-.. .++|+..+.+..-++.++..+...++..+.+.+..+..++.+++++|..++++++++|++.++...+++.
T Consensus 85 ~~gp~~~~~-~~~g~~atl~~egve~l~~Y~~ryLPq~~~~~ivp~~i~i~v~~~~w~aalIllit~PlIPlfMilvg~~ 163 (559)
T COG4988 85 KLGPAFIAQ-KPAGSAATLALEGIEQLEPYYARYLPQMFLSAIVPLLILIAIFFFNWAAALILLITAPLIPLFMILVGLA 163 (559)
T ss_pred hCChhhhcC-CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999876 5999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000984 228 ISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYKSGVQEGLAAGIGLGMVMLIVFCSYALSVW 307 (1198)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (1198)
.++..++....+....+++-+.++|+.|+|.|+..+...+++.+..++.++..++.-...-+...+.-++++...+++..
T Consensus 164 a~~~s~~~~~~~~~ls~~FLD~LrGL~TLr~f~~~~~~~~~i~~~se~fR~~TM~vLriAflSs~vLeffa~lsiAlvAv 243 (559)
T COG4988 164 AKDASEKQFSALARLSGHFLDRLRGLETLRAFGRTEATEERIRKDSEDFRKATMSVLRIAFLSSAVLEFFAYLSIALVAV 243 (559)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHhcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999988888888877666655555555555555554433
Q ss_pred -HHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCccCCCCcccCCCcccEEE
Q 000984 308 -YGGKLILEEGYNGGQVVNVMVAVLTGSMSLGEASPCLSAFGAGQAAAFKMFETINRKPEIDAYDTKGKILDDIRGDIEL 386 (1198)
Q Consensus 308 -~g~~l~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~ 386 (1198)
.|-.++..|.++....+.++...=-.+.++..+...++.-..+..++++++.+++.+++..+........+.....+..
T Consensus 244 ~~g~~ll~~G~ltl~~~l~~LiLAPEff~PlR~lGs~fH~~~~g~aa~d~i~~~l~~~~~~~~~~~~~~~~~~~~~ei~~ 323 (559)
T COG4988 244 YIGFRLLGEGDLTLFAGLFVLILAPEFFQPLRDLGSFFHAAAAGEAAADKLFTLLESPVATPGSGEKAEVANEPPIEISL 323 (559)
T ss_pred HHHHHHHccCCccHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhcCCCCCCCCccccccccCCCceeee
Confidence 4444433256665544444333333456888888888888888888888888887655432222111111222334556
Q ss_pred EeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcceEEEc
Q 000984 387 RDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVS 466 (1198)
Q Consensus 387 ~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~~v~ 466 (1198)
+|++|.||+. +++++|+||++++|++++|||+||||||||+++|+|+++|++|+|.+||+++.+++.+.+|++++||+
T Consensus 324 ~~l~~~y~~g--~~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~~~G~I~vng~~l~~l~~~~~~k~i~~v~ 401 (559)
T COG4988 324 ENLSFRYPDG--KPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQISWVS 401 (559)
T ss_pred cceEEecCCC--CcccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCccccccCHHHHHhHeeeeC
Confidence 6999999854 37999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhhccCCCEEEE
Q 000984 467 QEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLL 546 (1198)
Q Consensus 467 Q~~~l~~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal~~~~~illl 546 (1198)
|+|+||.|||||||.+++++.++++++++++.+++.+++.. |+|+||.+||+|.+|||||+||++||||+++++++|||
T Consensus 402 Q~p~lf~gTireNi~l~~~~~s~e~i~~al~~a~l~~~v~~-p~GLdt~ige~G~~LSgGQ~QRlaLARAll~~~~l~ll 480 (559)
T COG4988 402 QNPYLFAGTIRENILLARPDASDEEIIAALDQAGLLEFVPK-PDGLDTVIGEGGAGLSGGQAQRLALARALLSPASLLLL 480 (559)
T ss_pred CCCccccccHHHHhhccCCcCCHHHHHHHHHHhcHHHhhcC-CCcccchhccCCCCCCHHHHHHHHHHHHhcCCCCEEEe
Confidence 99999999999999999999999999999999999999999 99999999999999999999999999999999999999
Q ss_pred eCCCCCCCHHhHHHHHHHHHHHhCCCeEEEEecCcchhhccCEEEEEeCCEEEEecChhhHhcCCCchhHHHHHHHhh
Q 000984 547 DEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVEDPEGAYSQLIRLQEA 624 (1198)
Q Consensus 547 De~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~~~ 624 (1198)
|||||+||.++|+.|.+.|.++.+++|+|+||||++.+.++|+|+|||+|+++|.|+|++|.++ ++.|++++..|+.
T Consensus 481 DEpTA~LD~etE~~i~~~l~~l~~~ktvl~itHrl~~~~~~D~I~vld~G~l~~~g~~~~L~~~-~~~y~~l~~~q~~ 557 (559)
T COG4988 481 DEPTAHLDAETEQIILQALQELAKQKTVLVITHRLEDAADADRIVVLDNGRLVEQGTHEELSEK-QGLYANLLKQQEG 557 (559)
T ss_pred cCCccCCCHhHHHHHHHHHHHHHhCCeEEEEEcChHHHhcCCEEEEecCCceeccCCHHHHhhc-CcHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999999999999999999999999999987 7899999987653
|
|
| >PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-76 Score=726.32 Aligned_cols=566 Identities=22% Similarity=0.320 Sum_probs=462.6
Q ss_pred HHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCchh-hHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000984 46 FYKLFTFADSADTALMIIGSIGAIGNGLCLPLMTLLFGDLINTFGDNQNNSE-TVDKVSKVAVKFVYLGIGSGIASFLQV 124 (1198)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~ 124 (1198)
++++++|.++..+. +++++++.++..++....+++++.+++.......... ..... .....+++++++..++.++..
T Consensus 4 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~id~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 81 (574)
T PRK11160 4 LLPFLKLYKRHWFM-LSLGILLAIVTLLASIGLLTLSGWFLSASAVAGLAGLYSFNYM-LPAAGVRGAAIGRTAGRYGER 81 (574)
T ss_pred hHHHHHHHhhhhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhHHHH-hHHHHHHHHHHHHHHHHHHHH
Confidence 33455665544332 2233334444444444455567777775421111000 00111 112223345566677788888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCChhhhhccCCcchHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 000984 125 TCWMITGERQATRIRGLYLKTILRQDVAFFDNETNTGEVVGRMSGDTVLIQDAMGEKVGKFLQLMATFLGGFLIAFIKGW 204 (1198)
Q Consensus 125 ~~~~~~~~~~~~~lr~~~~~~ll~~~~~~f~~~~~~G~i~~r~s~D~~~i~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~ 204 (1198)
++....+.+...++|.++++++++.|+.+|++. ++|++++|+++|++.+++.+...+..++..++.+++.++++++++|
T Consensus 82 ~~~~~~~~~~~~~lR~~l~~~l~~~~~~~~~~~-~~g~~~srl~~Dv~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 160 (574)
T PRK11160 82 LVSHDATFRVLTHLRVFTFSKLLPLSPAGLARY-RQGDLLNRLVADVDTLDHLYLRLISPLVAALVVILVLTIGLSFFDL 160 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccChHhhccC-ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888999999999999999999999999874 9999999999999999999998888888888888899999999999
Q ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHH
Q 000984 205 LLTLVMLSSIPLLAM-SGGVMAIMISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYKSGVQE 283 (1198)
Q Consensus 205 ~l~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~ 283 (1198)
.+++++++.+|++++ ...++.+..++..++.++..++..+.+.|.++|+++||+|+.|+.+.+++.+..++..+...+.
T Consensus 161 ~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~ 240 (574)
T PRK11160 161 TLALTLGGILLLLLLLLPLLFYRLGKKPGQDLTHLRAQYRVQLTEWLQGQAELTLFGAEDRYRQQLEQTEQQWLAAQRRQ 240 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHCCHHHHHHcCChHHHHHHHHHHHHHHHHHHHHH
Confidence 999888777776554 3456667777777788888899999999999999999999999999999999998888888777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 000984 284 GLAAGIGLGMVMLIVFCSYALSVWYGGKLILEEGYNGGQVVNVMVAVLT-GSMSLGEASPCLSAFGAGQAAAFKMFETIN 362 (1198)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~l~-~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~ 362 (1198)
....+....+..++..+..++.+++|..+ ..+.++.|.+++++.+... ...++..+...+..+..+..+.+|+.+.++
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~i~~~g~~~-~~g~~t~g~l~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~s~~ri~~ll~ 319 (574)
T PRK11160 241 ANLTGLSQALMILANGLTVVLMLWLAAGG-VGGNAQPGALIALFVFAALAAFEALMPVAGAFQHLGQVIASARRINEITE 319 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 77776666666666666666667778777 4677888887665433322 233455555667788888999999999998
Q ss_pred cCCCCCccCCCCcccCCCcccEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCe
Q 000984 363 RKPEIDAYDTKGKILDDIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGE 442 (1198)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~g~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~ 442 (1198)
.+++.+.... ....+..+.|+++||+|+|++. ++++|+|+||+++|||+++||||||||||||+++|+|+++|++|+
T Consensus 320 ~~~~~~~~~~--~~~~~~~~~i~~~~v~f~y~~~-~~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p~~G~ 396 (574)
T PRK11160 320 QKPEVTFPTT--STAAADQVSLTLNNVSFTYPDQ-PQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGE 396 (574)
T ss_pred CCCCCCCCcc--cCCCCCCCeEEEEEEEEECCCC-CCcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCce
Confidence 7654321111 1112234679999999999753 357999999999999999999999999999999999999999999
Q ss_pred EEECCeecCCcCHHHHhcceEEEcCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCC
Q 000984 443 VLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQ 522 (1198)
Q Consensus 443 i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~ 522 (1198)
|.+||+|+++++.+++|++|+||||||++|++||+|||.++.++.++++++++++.+++++++++ |+|+||.+||+|.+
T Consensus 397 I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~i~~al~~~~l~~~i~~-p~GldT~vge~g~~ 475 (574)
T PRK11160 397 ILLNGQPIADYSEAALRQAISVVSQRVHLFSATLRDNLLLAAPNASDEALIEVLQQVGLEKLLED-DKGLNAWLGEGGRQ 475 (574)
T ss_pred EEECCEEhhhCCHHHHHhheeEEcccchhhcccHHHHhhcCCCccCHHHHHHHHHHcCCHHHHcC-ccccCchhcCCCCC
Confidence 99999999999999999999999999999999999999999988999999999999999999999 99999999999999
Q ss_pred CChHHHHHHhHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhCCCeEEEEecCcchhhccCEEEEEeCCEEEEec
Q 000984 523 LSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKG 602 (1198)
Q Consensus 523 lSgGqkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g 602 (1198)
|||||||||+||||++++|+|||||||||+||+++++.+++.+.+..+++|+|+||||+++++.||+|++|++|+++|.|
T Consensus 476 LSgGqrqRialARall~~~~ililDE~ts~lD~~t~~~i~~~l~~~~~~~tviiitHr~~~~~~~d~i~~l~~G~i~~~g 555 (574)
T PRK11160 476 LSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHAQNKTVLMITHRLTGLEQFDRICVMDNGQIIEQG 555 (574)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEecChhHHHhCCEEEEEeCCeEEEeC
Confidence 99999999999999999999999999999999999999999999988899999999999999999999999999999999
Q ss_pred ChhhHhcCCCchhHHHHH
Q 000984 603 THSKLVEDPEGAYSQLIR 620 (1198)
Q Consensus 603 ~~~~l~~~~~~~~~~~~~ 620 (1198)
+|+||+++ ++.|+++++
T Consensus 556 ~~~~l~~~-~g~y~~l~~ 572 (574)
T PRK11160 556 THQELLAQ-QGRYYQLKQ 572 (574)
T ss_pred CHHHHHhc-CcHHHHHHh
Confidence 99999987 789998875
|
|
| >TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-76 Score=745.93 Aligned_cols=532 Identities=26% Similarity=0.399 Sum_probs=459.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 000984 70 GNGLCLPLMTLLFGDLINTFGDNQNNSETVDKVSKVAVKFVYLGIGSGIASFLQVTCWMITGERQATRIRGLYLKTILRQ 149 (1198)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~ 149 (1198)
+..++....|++++.++|......+. .......+.++.+.++..++.+++.++..+.+.++..++|..+++++++.
T Consensus 158 ~~~l~~l~~p~~~~~iiD~~~~~~~~----~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~l 233 (694)
T TIGR03375 158 LINLLALASPLFVMNVYDRVVPNQAF----ETLWVLAIGVALAIVFDFVLKTLRSYFLDVAGKKADLILSAKLFERVLGL 233 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhcCcH----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 33334444555777778865432211 12222233333445556677888888888899999999999999999999
Q ss_pred ChhhhhccCCcchHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000984 150 DVAFFDNETNTGEVVGRMSGDTVLIQDAMGEKVGKFLQLMATFLGGFLIAFIKGWLLTLVMLSSIPLLAMSGGVMAIMIS 229 (1198)
Q Consensus 150 ~~~~f~~~~~~G~i~~r~s~D~~~i~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~ 229 (1198)
|+.+ ++ .++|++++|+ +|++.+++.+...+...+..+..+++.++++++++|.++++.++.+|+++++..++.+..+
T Consensus 234 ~~~~-~~-~~~G~~~~r~-~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l~~~~l~~~~~~~~~~~~~ 310 (694)
T TIGR03375 234 RMEA-RP-ASVGSFANQL-REFESVRDFFTSATLTALIDLPFALLFLLVIAIIGGPLVWVPLVAIPLILLPGLLLQRPLS 310 (694)
T ss_pred Cccc-CC-CChhHHHHHH-HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9998 55 4899999999 7999999998877777777777777777888899999999999999999888888999988
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000984 230 KMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYKSGVQEGLAAGIGLGMVMLIVFCSYALSVWYG 309 (1198)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 309 (1198)
+..++..+..++..+.+.|.++|+++||.|++|+.+.++|.+...+..+...+.....+....+..++..+..++.+++|
T Consensus 311 ~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~g 390 (694)
T TIGR03375 311 RLAEESMRESAQRNAVLVESLSGLETIKALNAEGRFQRRWEQTVAALARSGLKSRFLSNLATNFAQFIQQLVSVAIVVVG 390 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888889999999999999999999999999999999999998888888777777776666666666666677778889
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCccCCCCcccCCCcccEEEEeE
Q 000984 310 GKLILEEGYNGGQVVNVMVAVLTGSMSLGEASPCLSAFGAGQAAAFKMFETINRKPEIDAYDTKGKILDDIRGDIELRDV 389 (1198)
Q Consensus 310 ~~l~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~v 389 (1198)
+.++..+.++.|.+++++.+......++..+...+..+..+..+.+|+.++++.+++.+... .........+.|+++||
T Consensus 391 ~~~v~~g~ls~G~l~a~~~~~~~~~~p~~~l~~~~~~~~~~~~~~~ri~~il~~~~e~~~~~-~~~~~~~~~~~I~~~~v 469 (694)
T TIGR03375 391 VYLISDGELTMGGLIACVMLSGRALAPLGQLAGLLTRYQQAKTALQSLDELMQLPVERPEGT-RFLHRPRLQGEIEFRNV 469 (694)
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCC-CCCCCCCccceEEEEEE
Confidence 99999999999999887766666667888888888899999999999999998765432211 11111233567999999
Q ss_pred EEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcceEEEcCCC
Q 000984 390 YFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEP 469 (1198)
Q Consensus 390 ~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~ 469 (1198)
+|+|++. ++++|+|+||+|+|||+++|||+||||||||+++|+|+|+|++|+|.+||+|+++++.+++|++|+||||+|
T Consensus 470 sf~Y~~~-~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~l~~~~~~~lr~~i~~v~Q~~ 548 (694)
T TIGR03375 470 SFAYPGQ-ETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQIDPADLRRNIGYVPQDP 548 (694)
T ss_pred EEEeCCC-CccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhccEEECCCh
Confidence 9999743 357999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhhccCCCEEEEeCC
Q 000984 470 VLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEA 549 (1198)
Q Consensus 470 ~l~~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal~~~~~illlDe~ 549 (1198)
++|+|||+|||.++.+++++++++++++.++++++++.+|+|+||.+||+|.+|||||||||+||||++++|+|||||||
T Consensus 549 ~lf~~TI~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSgGQrQRlalARall~~p~iliLDE~ 628 (694)
T TIGR03375 549 RLFYGTLRDNIALGAPYADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQAVALARALLRDPPILLLDEP 628 (694)
T ss_pred hhhhhhHHHHHhCCCCCCCHHHHHHHHHHcChHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 99999999999999988999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHhHHHHHHHHHHHhCCCeEEEEecCcchhhccCEEEEEeCCEEEEecChhhHhcC
Q 000984 550 TSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVED 610 (1198)
Q Consensus 550 ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~ 610 (1198)
||+||+++++.+.+.+.+..+++|+|+||||+++++.||+|++|++|+++|.|+|+||++.
T Consensus 629 Ts~LD~~te~~i~~~l~~~~~~~T~iiItHrl~~~~~~D~iivl~~G~i~e~G~~~eLl~~ 689 (694)
T TIGR03375 629 TSAMDNRSEERFKDRLKRWLAGKTLVLVTHRTSLLDLVDRIIVMDNGRIVADGPKDQVLEA 689 (694)
T ss_pred CCCCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhCCEEEEEeCCEEEeeCCHHHHHHH
Confidence 9999999999999999999889999999999999999999999999999999999999864
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export. |
| >PRK11176 lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-76 Score=729.60 Aligned_cols=547 Identities=32% Similarity=0.530 Sum_probs=464.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000984 66 IGAIGNGLCLPLMTLLFGDLINTFGDNQNNSETVDKVSKVAVKFVYLGIGSGIASFLQVTCWMITGERQATRIRGLYLKT 145 (1198)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ 145 (1198)
++.++..++....++++..+++........ .......+.+++++++..++.+++.++..+.+.+....+|..++++
T Consensus 32 ~~~~~~~~~~~~~~~~~~~~id~~~~~~~~----~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ 107 (582)
T PRK11176 32 VALILNAASDTFMLSLLKPLLDDGFGKADR----SVLKWMPLVVIGLMILRGITSFISSYCISWVSGKVVMTMRRRLFGH 107 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCch----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444445555666666654422111 1111222223345556667777777777788889999999999999
Q ss_pred HHhCChhhhhccCCcchHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 000984 146 ILRQDVAFFDNETNTGEVVGRMSGDTVLIQDAMGEKVGKFLQLMATFLGGFLIAFIKGWLLTLVMLSSIPLLAMSGGVMA 225 (1198)
Q Consensus 146 ll~~~~~~f~~~~~~G~i~~r~s~D~~~i~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~l~l~~~~~~~~~~~~~~~~~ 225 (1198)
+++.|..+|++. +.|++++|+++|++.+.+.+...+..++..+..+++.++++++++|++++++++.+|+.+++.....
T Consensus 108 l~~~~~~~~~~~-~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~~l~~~~l~~~~~~~~~ 186 (582)
T PRK11176 108 MMGMPVSFFDKQ-STGTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQLSLILIVIAPIVSIAIRVVS 186 (582)
T ss_pred HHcCCHHHhCCC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999874 9999999999999999999888888888888999999999999999999988888888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000984 226 IMISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYKSGVQEGLAAGIGLGMVMLIVFCSYALS 305 (1198)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (1198)
+..++..++.++..++..+.+.|.++|+++||+|+.|+.+.+++.+..++..+...+..........+..++..+..++.
T Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 266 (582)
T PRK11176 187 KRFRNISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNRMRQQGMKMVSASSISDPIIQLIASLALAFV 266 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888999999999999999999999999999999998888887777766666555555555555566666
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCccCCCCcccCCCcccEE
Q 000984 306 VWYGGKLILEEGYNGGQVVNVMVAVLTGSMSLGEASPCLSAFGAGQAAAFKMFETINRKPEIDAYDTKGKILDDIRGDIE 385 (1198)
Q Consensus 306 ~~~g~~l~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~g~i~ 385 (1198)
+++|+..+..+.++.|.++.++.++.....++..+......+..+..+.+|+.+.++.+++.+... ...++..+.|+
T Consensus 267 ~~~g~~~~~~g~is~g~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~---~~~~~~~~~i~ 343 (582)
T PRK11176 267 LYAASFPSVMDTLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDLEQEKDEGK---RVIERAKGDIE 343 (582)
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCCCC---cCCCCCCCeEE
Confidence 778888888899999998777666666677888888888888899999999999887644322111 11122345799
Q ss_pred EEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcceEEE
Q 000984 386 LRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLV 465 (1198)
Q Consensus 386 ~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~~v 465 (1198)
++||+|+|++. ++++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||+|+++++.+++|++|+||
T Consensus 344 ~~~vsf~y~~~-~~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i~~v 422 (582)
T PRK11176 344 FRNVTFTYPGK-EVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHDLRDYTLASLRNQVALV 422 (582)
T ss_pred EEEEEEecCCC-CCccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCCCCceEEECCEEhhhcCHHHHHhhceEE
Confidence 99999999753 36799999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCcccHHHHHhcCCCC-CCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhhccCCCEE
Q 000984 466 SQEPVLFTGSIKDNIAYGKDD-ATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRIL 544 (1198)
Q Consensus 466 ~Q~~~l~~~ti~~Ni~~~~~~-~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal~~~~~il 544 (1198)
||||++|++||||||.++.++ +++++++++++.++++++++++|+|+||.+|++|.+|||||||||+||||++++|+||
T Consensus 423 ~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~LSGGqrQRi~LARall~~~~il 502 (582)
T PRK11176 423 SQNVHLFNDTIANNIAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLRDSPIL 502 (582)
T ss_pred ccCceeecchHHHHHhcCCCCCCCHHHHHHHHHHhCcHHHHHhcccccCceeCCCCCcCCHHHHHHHHHHHHHHhCCCEE
Confidence 999999999999999998754 7999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCCCCCCHHhHHHHHHHHHHHhCCCeEEEEecCcchhhccCEEEEEeCCEEEEecChhhHhcCCCchhHHHHHHH
Q 000984 545 LLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVEDPEGAYSQLIRLQ 622 (1198)
Q Consensus 545 llDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~ 622 (1198)
|||||||+||+++++.+.+.+.+..+++|+|+||||++.++.||+|++|++|+++|.|+|++|+++ ++.|++++..+
T Consensus 503 ilDEptsaLD~~t~~~i~~~l~~~~~~~tvI~VtHr~~~~~~~D~Ii~l~~g~i~e~g~~~~l~~~-~~~y~~l~~~~ 579 (582)
T PRK11176 503 ILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEKADEILVVEDGEIVERGTHAELLAQ-NGVYAQLHKMQ 579 (582)
T ss_pred EEECccccCCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEEEEEECCEEEEeCCHHHHHhC-CChHHHHHHHH
Confidence 999999999999999999999998889999999999999999999999999999999999999987 68899988644
|
|
| >PTZ00243 ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-76 Score=785.82 Aligned_cols=512 Identities=20% Similarity=0.279 Sum_probs=412.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhccCCcchHHHHHHhHHHHHHHHHHHHHHHHHH
Q 000984 108 KFVYLGIGSGIASFLQVTCWMITGERQATRIRGLYLKTILRQDVAFFDNETNTGEVVGRMSGDTVLIQDAMGEKVGKFLQ 187 (1198)
Q Consensus 108 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~f~~~~~~G~i~~r~s~D~~~i~~~~~~~~~~~~~ 187 (1198)
+|++++++..++.+++.+.....+.+.+.++|..++++++++|+.|||+ +++|+++||+++|++.+++.++..+..++.
T Consensus 1003 ~y~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ffd~-~~~G~ilnR~s~Di~~id~~l~~~l~~~~~ 1081 (1560)
T PTZ00243 1003 VYLGIVLLGTFSVPLRFFLSYEAMRRGSRNMHRDLLRSVSRGTMSFFDT-TPLGRILNRFSRDIDILDNTLPMSYLYLLQ 1081 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhccC-CCccHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 3444444444455555555555667788999999999999999999997 599999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcHHHHHH
Q 000984 188 LMATFLGGFLIAFIKGWLLTLVMLSSIPLLAMSGGVMAIMISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQAMS 267 (1198)
Q Consensus 188 ~~~~~i~~~i~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~ 267 (1198)
.+..+++.++++++..|.+++++++++.+++.+..++.+..++..+......++..+++.|++.|+++||+|++++.+.+
T Consensus 1082 ~~~~~i~~li~~~~~~p~~~~~~i~~~~~~~~i~~~~~~~~r~~~r~~~~~~s~l~s~~~E~l~G~~tIraf~~e~~~~~ 1161 (1560)
T PTZ00243 1082 CLFSICSSILVTSASQPFVLVALVPCGYLYYRLMQFYNSANREIRRIKSVAKSPVFTLLEEALQGSATITAYGKAHLVMQ 1161 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHcCHHHHHhCccHHHHHH
Confidence 99998988888888888554444333333334445555555666666667788899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000984 268 NYKKFLVTAYKSGVQEGLAAGIGLGMVMLIVFCSYALSVWYGG--KLILEEGYNGGQVVNVMVAVLTGSMSLGEASPCLS 345 (1198)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~--~l~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~ 345 (1198)
++.+..+...+..........+......++..+..++..+++. .+...+..+.|.+..++.+......++..+...+.
T Consensus 1162 ~~~~~~d~~~~~~~~~~~~~~w~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~l~~a~~l~~~l~~l~~~~~ 1241 (1560)
T PTZ00243 1162 EALRRLDVVYSCSYLENVANRWLGVRVEFLSNIVVTVIALIGVIGTMLRATSQEIGLVSLSLTMAMQTTATLNWLVRQVA 1241 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9988877776655443322222221222222221112222222 12223345666665555555555667777777888
Q ss_pred HHHHHHHHHHHHHHHHccCCCCCccC-------------------------C-CCc---ccCCCcccEEEEeEEEEcCCC
Q 000984 346 AFGAGQAAAFKMFETINRKPEIDAYD-------------------------T-KGK---ILDDIRGDIELRDVYFSYPAR 396 (1198)
Q Consensus 346 ~~~~~~~~~~r~~~~~~~~~~~~~~~-------------------------~-~~~---~~~~~~g~i~~~~v~~~y~~~ 396 (1198)
.+..++.+.+|+.++++..++++... . .+. +.++..|.|+|+||+|+|++.
T Consensus 1242 ~le~~~~s~eRi~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~f~nVsf~Y~~~ 1321 (1560)
T PTZ00243 1242 TVEADMNSVERLLYYTDEVPHEDMPELDEEVDALERRTGMAADVTGTVVIEPASPTSAAPHPVQAGSLVFEGVQMRYREG 1321 (1560)
T ss_pred HHHHHHHHHHHHHHHHhcCCccccccccccccccccccccccccccccccccCCCcccCCCCCCCCeEEEEEEEEEeCCC
Confidence 89999999999999986433221000 0 000 112245789999999999753
Q ss_pred CCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcceEEEcCCCCCCcccH
Q 000984 397 PNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSI 476 (1198)
Q Consensus 397 ~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti 476 (1198)
.+++|+|+||+|+|||++||||+||||||||+++|+|+++|++|+|.|||+|+++++++++|++|+||||||.||+|||
T Consensus 1322 -~~~vL~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~p~~G~I~IDG~di~~i~l~~LR~~I~iVpQdp~LF~gTI 1400 (1560)
T PTZ00243 1322 -LPLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGLRELRRQFSMIPQDPVLFDGTV 1400 (1560)
T ss_pred -CCceeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccCCHHHHHhcceEECCCCccccccH
Confidence 3569999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhhccC-CCEEEEeCCCCCCCH
Q 000984 477 KDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKD-PRILLLDEATSALDA 555 (1198)
Q Consensus 477 ~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal~~~-~~illlDe~ts~lD~ 555 (1198)
|+||+++ .++++++++++++.+++++++.++|+|+||.+||+|.+|||||||||||||||+++ |+|||||||||+||+
T Consensus 1401 reNIdp~-~~~sdeeI~~Al~~a~l~~~I~~lp~Gldt~vge~G~nLSgGQrQrLaLARALL~~~~~ILlLDEATSaLD~ 1479 (1560)
T PTZ00243 1401 RQNVDPF-LEASSAEVWAALELVGLRERVASESEGIDSRVLEGGSNYSVGQRQLMCMARALLKKGSGFILMDEATANIDP 1479 (1560)
T ss_pred HHHhCcc-cCCCHHHHHHHHHHCCChHHHhhCcccccccccCCcCcCCHHHHHHHHHHHHHhcCCCCEEEEeCCCccCCH
Confidence 9999964 46899999999999999999999999999999999999999999999999999996 899999999999999
Q ss_pred HhHHHHHHHHHHHhCCCeEEEEecCcchhhccCEEEEEeCCEEEEecChhhHhcCCCchhHHHHHHH
Q 000984 556 ESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVEDPEGAYSQLIRLQ 622 (1198)
Q Consensus 556 ~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~ 622 (1198)
++++.|++.|++.++++|+|+||||++++.+||+|+||++|+|+|.|+|+||++++++.|+++++.+
T Consensus 1480 ~te~~Iq~~L~~~~~~~TvI~IAHRl~ti~~~DrIlVLd~G~VvE~Gt~~eLl~~~~~~f~~l~~~~ 1546 (1560)
T PTZ00243 1480 ALDRQIQATVMSAFSAYTVITIAHRLHTVAQYDKIIVMDHGAVAEMGSPRELVMNRQSIFHSMVEAL 1546 (1560)
T ss_pred HHHHHHHHHHHHHCCCCEEEEEeccHHHHHhCCEEEEEECCEEEEECCHHHHHhCCCCHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999999987688999998754
|
|
| >PLN03232 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-76 Score=790.44 Aligned_cols=512 Identities=20% Similarity=0.299 Sum_probs=405.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhccCCcchHHHHHHhHHHHHHHHHHHHHHH
Q 000984 105 VAVKFVYLGIGSGIASFLQVTCWMITGERQATRIRGLYLKTILRQDVAFFDNETNTGEVVGRMSGDTVLIQDAMGEKVGK 184 (1198)
Q Consensus 105 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~f~~~~~~G~i~~r~s~D~~~i~~~~~~~~~~ 184 (1198)
+...|++++++..++.+++.+++.+.+.+++.++|.+++++++++|++||++ +++|+++||+++|++.+++.++..+..
T Consensus 952 ~l~~y~~l~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~p~~ff~~-~~~G~ilnr~s~Di~~id~~l~~~~~~ 1030 (1495)
T PLN03232 952 YIVVYALLGFGQVAVTFTNSFWLISSSLHAAKRLHDAMLNSILRAPMLFFHT-NPTGRVINRFSKDIGDIDRNVANLMNM 1030 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeeCc-CCchHHHHHhHhhHHHHHHHHHHHHHH
Confidence 4455667777778888888888888999999999999999999999999997 599999999999999999999998888
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcHHH
Q 000984 185 FLQLMATFLGGFLIAFIKGWLLTLVMLSSIPLLAMSGGVMAIMISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQ 264 (1198)
Q Consensus 185 ~~~~~~~~i~~~i~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~ 264 (1198)
++..++.+++.+++++.+.+...++++++..++++...++.+..++..+......++..+++.|+++|+++||+|++++.
T Consensus 1031 ~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~s~~~~~~~E~l~G~~tIraf~~~~~ 1110 (1495)
T PLN03232 1031 FMNQLWQLLSTFALIGTVSTISLWAIMPLLILFYAAYLYYQSTSREVRRLDSVTRSPIYAQFGEALNGLSSIRAYKAYDR 1110 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHhcChHHHhcCCcHHH
Confidence 88888888887777776665433332222222222233333444445555566778889999999999999999999998
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCC----C-HHHHHHHHHHHHHHHHHHH
Q 000984 265 AMSNYKKFLVTAYKSGVQEGLAAGIGLGMVMLIVFCSYALSVWYGGKLILE-EGY----N-GGQVVNVMVAVLTGSMSLG 338 (1198)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~-~~~----~-~~~~~~~~~~~l~~~~~l~ 338 (1198)
+.+++.+..+...+..........+ ..... .....++.++.+...+.. +.. . ++.+..++.+......++.
T Consensus 1111 ~~~~~~~~~~~~~~~~~~~~~~~~w-l~~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~ 1187 (1495)
T PLN03232 1111 MAKINGKSMDNNIRFTLANTSSNRW-LTIRL--ETLGGVMIWLTATFAVLRNGNAENQAGFASTMGLLLSYTLNITTLLS 1187 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH--HHHHHHHHHHHHHHHHHccccccccccchHHHHHHHHHHHHHHHHHH
Confidence 8887777666555443322211111 11100 001111111112222221 211 1 1111112222333344566
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHccCCCCCccCCC--CcccCCCcccEEEEeEEEEcCCCCCCccccceeEEEeCCCEEE
Q 000984 339 EASPCLSAFGAGQAAAFKMFETINRKPEIDAYDTK--GKILDDIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAA 416 (1198)
Q Consensus 339 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~~g~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ 416 (1198)
.+...+..+..+..+.+|+.++++.++|.+..... +.+.++..|.|+|+||+|+|+.+ .+++|+|+||+|+|||++|
T Consensus 1188 ~l~~~~~~~~~~~~s~eRi~e~~~~~~e~~~~~~~~~~~~~~p~~g~I~f~nVsf~Y~~~-~~~vL~~isl~I~~Gekva 1266 (1495)
T PLN03232 1188 GVLRQASKAENSLNSVERVGNYIDLPSEATAIIENNRPVSGWPSRGSIKFEDVHLRYRPG-LPPVLHGLSFFVSPSEKVG 1266 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCccccccccCCCCCCCCCCCCcEEEEEEEEEECCC-CCcccccceEEEcCCCEEE
Confidence 66777888889999999999999876553321111 11224556889999999999533 3579999999999999999
Q ss_pred EEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcceEEEcCCCCCCcccHHHHHhcCCCCCCHHHHHHHH
Q 000984 417 LVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVAT 496 (1198)
Q Consensus 417 ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~Ni~~~~~~~~~~~~~~~~ 496 (1198)
||||||||||||+++|+|+++|++|+|.|||+|+++++++++|++|+||||||.||+|||||||+++. +++++++++++
T Consensus 1267 IVG~SGSGKSTL~~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~~i~iVpQdp~LF~gTIr~NL~~~~-~~sdeei~~al 1345 (1495)
T PLN03232 1267 VVGRTGAGKSSMLNALFRIVELEKGRIMIDDCDVAKFGLTDLRRVLSIIPQSPVLFSGTVRFNIDPFS-EHNDADLWEAL 1345 (1495)
T ss_pred EECCCCCCHHHHHHHHhCCCcCCCceEEECCEEhhhCCHHHHHhhcEEECCCCeeeCccHHHHcCCCC-CCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999875 68999999999
Q ss_pred HHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhCCCeEEE
Q 000984 497 ELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVI 576 (1198)
Q Consensus 497 ~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~ 576 (1198)
+.++++++++++|+|+||.+||+|.+|||||||||||||||+++|+|||||||||+||++|++.|++.|++.++++|+|+
T Consensus 1346 ~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrlaLARALLr~~~ILILDEATSaLD~~Te~~Iq~~L~~~~~~~TvI~ 1425 (1495)
T PLN03232 1346 ERAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQLLSLARALLRRSKILVLDEATASVDVRTDSLIQRTIREEFKSCTMLV 1425 (1495)
T ss_pred HHcCCHHHHHhCcCCCCceecCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecCcchhhccCEEEEEeCCEEEEecChhhHhcCCCchhHHHHHHH
Q 000984 577 VAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVEDPEGAYSQLIRLQ 622 (1198)
Q Consensus 577 itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~ 622 (1198)
||||++++.+||+|+||++|+|+|.|+|+||++++++.|+++++.+
T Consensus 1426 IAHRl~ti~~~DrIlVL~~G~ivE~Gt~~eLl~~~~~~f~~l~~~~ 1471 (1495)
T PLN03232 1426 IAHRLNTIIDCDKILVLSSGQVLEYDSPQELLSRDTSAFFRMVHST 1471 (1495)
T ss_pred EeCCHHHHHhCCEEEEEECCEEEEECCHHHHHhCCCCHHHHHHHHh
Confidence 9999999999999999999999999999999988667999998754
|
|
| >PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-75 Score=723.51 Aligned_cols=564 Identities=25% Similarity=0.359 Sum_probs=457.8
Q ss_pred HHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000984 48 KLFTFADSADTALMIIGSIGAIGNGLCLPLMTLLFGDLINTFGDNQNNSETVDKVSKVAVKFVYLGIGSGIASFLQVTCW 127 (1198)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 127 (1198)
+++.|..++.+. +++.+++.++...+....|.+++.++|......+.. . .....+++.++++.++..++.+++.+..
T Consensus 13 ~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~p~~~~~iid~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (592)
T PRK10790 13 RLLAYGSPWRKP-LGLAVLMLWVAAAAEVSGPLLISYFIDNMVAKGNLP-L-GLVAGLAAAYVGLQLLAAGLHYAQSLLF 89 (592)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcc-h-hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444433332 233444445555556666778888888654321110 1 1111122223344445566777777888
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCChhhhhccCCcchHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 000984 128 MITGERQATRIRGLYLKTILRQDVAFFDNETNTGEVVGRMSGDTVLIQDAMGEKVGKFLQLMATFLGGFLIAFIKGWLLT 207 (1198)
Q Consensus 128 ~~~~~~~~~~lr~~~~~~ll~~~~~~f~~~~~~G~i~~r~s~D~~~i~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~l~ 207 (1198)
...+.+...++|..+++++++.|.++|++. ++|++++|+++|++.+++.+...+..++..+..+++.++++++++|+++
T Consensus 90 ~~~~~~~~~~lr~~l~~~l~~~~~~~~~~~-~~g~~~~~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 168 (592)
T PRK10790 90 NRAAVGVVQQLRTDVMDAALRQPLSAFDTQ-PVGQLISRVTNDTEVIRDLYVTVVATVLRSAALIGAMLVAMFSLDWRMA 168 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCHHHhCCC-ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888899999999999999999999999874 9999999999999999999998888888888888888888999999998
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000984 208 LVMLSSIPLLAMSGGVMAIMISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYKSGVQEGLAA 287 (1198)
Q Consensus 208 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (1198)
+++++.+|++++...+..+..++..++.++..++..+.+.|.+.|+++||.|+.|+.+.+++.+...+..+...+.....
T Consensus 169 li~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (592)
T PRK10790 169 LVAIMIFPAVLVVMVIYQRYSTPIVRRVRAYLADINDGFNEVINGMSVIQQFRQQARFGERMGEASRSHYMARMQTLRLD 248 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888877777677777777777777788888999999999999999999999999999888777666655544443
Q ss_pred HHHH-HHHHHHHH-HHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC
Q 000984 288 GIGL-GMVMLIVF-CSYALSVWYGGKLILEEGYNGGQVVNVMVAVLTGSMSLGEASPCLSAFGAGQAAAFKMFETINRKP 365 (1198)
Q Consensus 288 ~~~~-~~~~~~~~-~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 365 (1198)
+... .+..++.. ...+++++.| . +..+.++.|.+++++.+......++..+......+..+..+++|+.+.++.++
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~g~is~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~s~~ri~~~l~~~~ 326 (592)
T PRK10790 249 GFLLRPLLSLFSALILCGLLMLFG-F-SASGTIEVGVLYAFISYLGRLNEPLIELTTQQSMLQQAVVAGERVFELMDGPR 326 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-H-HHCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 3321 11112111 1222223333 3 46788999988877666666667888888888999999999999999987544
Q ss_pred CCCccCCCCcccCCCcccEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEE
Q 000984 366 EIDAYDTKGKILDDIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLI 445 (1198)
Q Consensus 366 ~~~~~~~~~~~~~~~~g~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i 445 (1198)
+... . ...+...+.|+++|++|+|+. ++++|+|+||++++||+++|||+||||||||+++|+|+++|++|+|.+
T Consensus 327 ~~~~-~---~~~~~~~~~i~~~~v~f~y~~--~~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~G~I~i 400 (592)
T PRK10790 327 QQYG-N---DDRPLQSGRIDIDNVSFAYRD--DNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRL 400 (592)
T ss_pred ccCC-C---CccCCCCCeEEEEEEEEEeCC--CCceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEE
Confidence 3111 1 111223467999999999974 357999999999999999999999999999999999999999999999
Q ss_pred CCeecCCcCHHHHhcceEEEcCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCCh
Q 000984 446 DGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSG 525 (1198)
Q Consensus 446 ~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSg 525 (1198)
||+|+++++.+++|++|+||||||++|+|||||||.++. ++++++++++++.++++++++.+|+|+||.+|++|.+|||
T Consensus 401 dg~~i~~~~~~~l~~~i~~v~Q~~~lF~~Ti~~NI~~~~-~~~d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LSG 479 (592)
T PRK10790 401 DGRPLSSLSHSVLRQGVAMVQQDPVVLADTFLANVTLGR-DISEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLSV 479 (592)
T ss_pred CCEEhhhCCHHHHHhheEEEccCCccccchHHHHHHhCC-CCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCH
Confidence 999999999999999999999999999999999999987 5899999999999999999999999999999999999999
Q ss_pred HHHHHHhHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhCCCeEEEEecCcchhhccCEEEEEeCCEEEEecChh
Q 000984 526 GQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHS 605 (1198)
Q Consensus 526 Gqkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~ 605 (1198)
||||||+||||++++|+|+|||||||+||+++++.+.+.+++..+++|+|+||||++.++.||+|++|++|++++.|+|+
T Consensus 480 GqrQRialARaLl~~~~illlDEpts~LD~~t~~~i~~~l~~~~~~~tvIivtHr~~~l~~~D~ii~l~~G~i~~~G~~~ 559 (592)
T PRK10790 480 GQKQLLALARVLVQTPQILILDEATANIDSGTEQAIQQALAAVREHTTLVVIAHRLSTIVEADTILVLHRGQAVEQGTHQ 559 (592)
T ss_pred HHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEEEEEECCEEEEEcCHH
Confidence 99999999999999999999999999999999999999999988899999999999999999999999999999999999
Q ss_pred hHhcCCCchhHHHHHHHhhc
Q 000984 606 KLVEDPEGAYSQLIRLQEAN 625 (1198)
Q Consensus 606 ~l~~~~~~~~~~~~~~~~~~ 625 (1198)
||+++ ++.|+++++.+...
T Consensus 560 ~L~~~-~~~y~~l~~~~~~~ 578 (592)
T PRK10790 560 QLLAA-QGRYWQMYQLQLAG 578 (592)
T ss_pred HHHhC-CCHHHHHHHHHhhh
Confidence 99987 68999998766443
|
|
| >TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-74 Score=718.48 Aligned_cols=562 Identities=33% Similarity=0.527 Sum_probs=484.5
Q ss_pred HHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000984 49 LFTFADSADTALMIIGSIGAIGNGLCLPLMTLLFGDLINTFGDNQNNSETVDKVSKVAVKFVYLGIGSGIASFLQVTCWM 128 (1198)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 128 (1198)
++.+.+... ..+++++++.++..++.+..+++++.+++....... ..........++++.++..++.+++.+...
T Consensus 5 l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~----~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 79 (571)
T TIGR02203 5 LWSYVRPYK-AGLVLAGVAMILVAATESTLAALLKPLLDDGFGGRD----RSVLWWVPLVVIGLAVLRGICSFVSTYLLS 79 (571)
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCc----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444443332 344555566666677777777788777775433211 112222233344556667778888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHhCChhhhhccCCcchHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 000984 129 ITGERQATRIRGLYLKTILRQDVAFFDNETNTGEVVGRMSGDTVLIQDAMGEKVGKFLQLMATFLGGFLIAFIKGWLLTL 208 (1198)
Q Consensus 129 ~~~~~~~~~lr~~~~~~ll~~~~~~f~~~~~~G~i~~r~s~D~~~i~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~l~l 208 (1198)
..+.+...++|..+++++++.|.++|++. +.|++++|+++|++.+++.+...+..++..+..+++.++++++++|++++
T Consensus 80 ~~~~~~~~~lr~~l~~~~~~~~~~~~~~~-~~g~~~~~l~~di~~i~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~l~~ 158 (571)
T TIGR02203 80 WVSNKVVRDIRVRMFEKLLGLPVSFFDRQ-PTGTLLSRITFDSEQVASAATDAFIVLVRETLTVIGLFIVLLYYSWQLTL 158 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHhCCC-CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 89999999999999999999999999874 89999999999999999999988899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000984 209 VMLSSIPLLAMSGGVMAIMISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYKSGVQEGLAAG 288 (1198)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (1198)
++++.+|+.+++..++.+..++...+..+..++..+.+.|.++|+++||.++.++.+.+++.+..++..+...+.....+
T Consensus 159 i~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (571)
T TIGR02203 159 IVVVMLPVLSILMRRVSKRLRRISKEIQNSMGQVTTVAEETLQGYRVVKLFGGQAYETRRFDAVSNRNRRLAMKMTSAGS 238 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999988888899888888888889999999999999999999999999999999999988888887777766666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCC
Q 000984 289 IGLGMVMLIVFCSYALSVWYGGKLILEEGYNGGQVVNVMVAVLTGSMSLGEASPCLSAFGAGQAAAFKMFETINRKPEID 368 (1198)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ 368 (1198)
....+..++..+..++.+++|+.++..+.++.|.++++..++.....++..+......+..+..+.+|+.+.++.+++.+
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~g~~~~~~g~lt~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~ 318 (571)
T TIGR02203 239 ISSPITQLIASLALAVVLFIALFQAQAGSLTAGDFTAFITAMIALIRPLKSLTNVNAPMQRGLAAAESLFTLLDSPPEKD 318 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCC
Confidence 66656666666667777888888888999999999888777777777888888888999999999999999987655432
Q ss_pred ccCCCCcccCCCcccEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCe
Q 000984 369 AYDTKGKILDDIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGI 448 (1198)
Q Consensus 369 ~~~~~~~~~~~~~g~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~ 448 (1198)
... ....+..+.|+++||+|+|+++ ++++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||+
T Consensus 319 ~~~---~~~~~~~~~i~~~~v~f~y~~~-~~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I~i~g~ 394 (571)
T TIGR02203 319 TGT---RAIERARGDVEFRNVTFRYPGR-DRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGH 394 (571)
T ss_pred CCC---CCCCCCCCeEEEEEEEEEcCCC-CCccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCE
Confidence 111 1111234679999999999754 357999999999999999999999999999999999999999999999999
Q ss_pred ecCCcCHHHHhcceEEEcCCCCCCcccHHHHHhcCCC-CCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHH
Q 000984 449 NLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKD-DATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQ 527 (1198)
Q Consensus 449 ~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~Ni~~~~~-~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGq 527 (1198)
|+++++.+++|++++||||+|++|+|||||||.++.+ +.++++++++++.+++++++.++|+|+||.+|++|.+|||||
T Consensus 395 ~i~~~~~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSgGq 474 (571)
T TIGR02203 395 DLADYTLASLRRQVALVSQDVVLFNDTIANNIAYGRTEQADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQ 474 (571)
T ss_pred eHHhcCHHHHHhhceEEccCcccccccHHHHHhcCCCCCCCHHHHHHHHHHcChHHHHHhCcCcccceecCCCCcCCHHH
Confidence 9999999999999999999999999999999999986 789999999999999999999999999999999999999999
Q ss_pred HHHHhHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhCCCeEEEEecCcchhhccCEEEEEeCCEEEEecChhhH
Q 000984 528 KQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKL 607 (1198)
Q Consensus 528 kqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l 607 (1198)
||||+||||++++|+|+|||||||+||+++++.+.+.|++..+++|+|+||||++.+..||+|++|++|++++.|+|+++
T Consensus 475 rQRiaLARall~~~~illLDEpts~LD~~~~~~i~~~L~~~~~~~tiIiitH~~~~~~~~D~ii~l~~g~i~~~g~~~~l 554 (571)
T TIGR02203 475 RQRLAIARALLKDAPILILDEATSALDNESERLVQAALERLMQGRTTLVIAHRLSTIEKADRIVVMDDGRIVERGTHNEL 554 (571)
T ss_pred HHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhCCCEEEEEehhhHHHHhCCEEEEEeCCEEEeeCCHHHH
Confidence 99999999999999999999999999999999999999998889999999999999999999999999999999999999
Q ss_pred hcCCCchhHHHHHH
Q 000984 608 VEDPEGAYSQLIRL 621 (1198)
Q Consensus 608 ~~~~~~~~~~~~~~ 621 (1198)
+++ ++.|++++..
T Consensus 555 ~~~-~~~~~~~~~~ 567 (571)
T TIGR02203 555 LAR-NGLYAQLHNM 567 (571)
T ss_pred HHc-CCHHHHHHHH
Confidence 986 6788877653
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes. |
| >TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-74 Score=728.94 Aligned_cols=538 Identities=29% Similarity=0.439 Sum_probs=464.9
Q ss_pred HHHHHHHHHHHHhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhh
Q 000984 75 LPLMTLLFGDLINTFGDNQNNSETVDKVSKVAVKFVYLGIGSGIASFLQVTCWMITGERQATRIRGLYLKTILRQDVAFF 154 (1198)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~f 154 (1198)
....|++++.++|......+. .......+.++++.++..++.+++.++....+.+...++|..+++++++.|+.+|
T Consensus 155 ~l~~p~~~~~iid~v~~~~~~----~~l~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~f 230 (694)
T TIGR01846 155 ALVTPLLFQVVIDKVLVHRGL----STLSVLALAMLAVAIFEPALGGLRTYLFAHLTSRIDVELGARLYRHLLGLPLGYF 230 (694)
T ss_pred HHHHHHHHHHHHHHhhccCCh----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHc
Confidence 344455777778865432211 2222333344455556677888888888889999999999999999999999999
Q ss_pred hccCCcchHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000984 155 DNETNTGEVVGRMSGDTVLIQDAMGEKVGKFLQLMATFLGGFLIAFIKGWLLTLVMLSSIPLLAMSGGVMAIMISKMSSR 234 (1198)
Q Consensus 155 ~~~~~~G~i~~r~s~D~~~i~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (1198)
++. ++|++++|+ +|++.+++.+...+...+..+..++..++++++++|.+++++++++|+++++..++.+..++..++
T Consensus 231 ~~~-~~g~~~~rl-~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l~~~~~~~~i~~~~~~~~~~~~~~ 308 (694)
T TIGR01846 231 ESR-RVGDTVARV-RELEQIRNFLTGSALTVVLDLLFVVVFLAVMFFYSPTLTGVVIGSLVCYALLSVFVGPILRKRVED 308 (694)
T ss_pred CCC-CHHHHHHHh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 874 999999999 699999999877776666666666666788899999999998888898888888888888888888
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000984 235 GQGAYAKAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYKSGVQEGLAAGIGLGMVMLIVFCSYALSVWYGGKLIL 314 (1198)
Q Consensus 235 ~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~ 314 (1198)
..+..++..+.+.|.++|+++||+++.|+.+.++|.+...+..+...+.....+.......++..+..++.+++|+.++.
T Consensus 309 ~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~il~~g~~lv~ 388 (694)
T TIGR01846 309 KFERSAAATSFLVESVTGIETIKATATEPQFQNRWDRQLAAYVAASFRVTNLGNIAGQAIELIQKLTFAILLWFGAHLVI 388 (694)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 88888899999999999999999999999999999999888887777777766666556566666667777889999999
Q ss_pred hCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCccCCCCcccCCCcccEEEEeEEEEcC
Q 000984 315 EEGYNGGQVVNVMVAVLTGSMSLGEASPCLSAFGAGQAAAFKMFETINRKPEIDAYDTKGKILDDIRGDIELRDVYFSYP 394 (1198)
Q Consensus 315 ~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~v~~~y~ 394 (1198)
.+.++.|.++++.........++..+......+..+..+.+|+.+.++.+++.+.. .....+...+.|+++||+|+|+
T Consensus 389 ~g~it~G~lia~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~~--~~~~~~~~~~~i~~~~vsf~y~ 466 (694)
T TIGR01846 389 GGALSPGQLVAFNMLAGRVTQPVLRLAQLWQDFQQTGIALERLGDILNSPTEPRSA--GLAALPELRGAITFENIRFRYA 466 (694)
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCccCC--CCCCCCCCCCeEEEEEEEEEcC
Confidence 99999999988776666666788888888889999999999999998765543221 1111223356899999999997
Q ss_pred CCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcceEEEcCCCCCCcc
Q 000984 395 ARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTG 474 (1198)
Q Consensus 395 ~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ 474 (1198)
.. ++++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||+|+++++.+++|++|+||||+|++|++
T Consensus 467 ~~-~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~~G~I~idg~~i~~~~~~~~r~~i~~v~q~~~lf~~ 545 (694)
T TIGR01846 467 PD-SPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVDLAIADPAWLRRQMGVVLQENVLFSR 545 (694)
T ss_pred CC-CccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEehhhCCHHHHHHhCeEEccCCeehhh
Confidence 43 35799999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhhccCCCEEEEeCCCCCCC
Q 000984 475 SIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALD 554 (1198)
Q Consensus 475 ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal~~~~~illlDe~ts~lD 554 (1198)
||||||.++.++.++++++++|+.++++++++++|+|+||.+|++|.+||||||||++||||++++|+|||||||||+||
T Consensus 546 ti~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~qri~lARall~~~~ililDEpts~LD 625 (694)
T TIGR01846 546 SIRDNIALCNPGAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQRQRIAIARALVGNPRILIFDEATSALD 625 (694)
T ss_pred hHHHHHhcCCCCCCHHHHHHHHHHcChHHHHHhCcCccCcEecCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCC
Confidence 99999999988899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhHHHHHHHHHHHhCCCeEEEEecCcchhhccCEEEEEeCCEEEEecChhhHhcCCCchhHHHHHHH
Q 000984 555 AESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVEDPEGAYSQLIRLQ 622 (1198)
Q Consensus 555 ~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~ 622 (1198)
+++++.+.+.+++..+++|+|+||||+++++.||+|++|++|++++.|+|++|+++ ++.|+++++.+
T Consensus 626 ~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~ii~l~~G~i~~~g~~~~l~~~-~~~y~~l~~~~ 692 (694)
T TIGR01846 626 YESEALIMRNMREICRGRTVIIIAHRLSTVRACDRIIVLEKGQIAESGRHEELLAL-QGLYARLWQQQ 692 (694)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEEeCChHHHHhCCEEEEEeCCEEEEeCCHHHHHHc-CChHHHHHHhh
Confidence 99999999999998889999999999999999999999999999999999999987 68999988643
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-75 Score=649.62 Aligned_cols=546 Identities=27% Similarity=0.405 Sum_probs=440.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcc-CCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000984 69 IGNGLCLPLMTLLFGDLINTFGD-NQNNSETVDKVSKVAVKFVYLGIGSGIASFLQVTCWMITGERQATRIRGLYLKTIL 147 (1198)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll 147 (1198)
+++....-..|.++...++.... ...+ ............|.+..++..++..++...+.+..++.-...-++++.+.+
T Consensus 40 ~~aK~l~v~vp~~~~~~id~l~~~~~~~-a~~~~~~~~~~~y~iar~~s~~F~el~~~vfa~v~q~~iR~~~~~vf~~~~ 118 (591)
T KOG0057|consen 40 LGAKILNVQVPFIFKLIIDGLNDADGNP-AVLSTITALLAGYGIARLGSSVFNELRNFVFAKVAQRVIRDSSSDVFRHLM 118 (591)
T ss_pred HhhhHhheehHHHHHHHHhhhhhcccCc-chhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344455555566666665421 1111 112222334455667777888999999999999999999999999999999
Q ss_pred hCChhhhhccCCcchHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 000984 148 RQDVAFFDNETNTGEVVGRMSGDTVLIQDAMGEKVGKFLQLMATFLG-GFLIAFIKGWLLTLVMLSSIPLLAMSGGVMAI 226 (1198)
Q Consensus 148 ~~~~~~f~~~~~~G~i~~r~s~D~~~i~~~~~~~~~~~~~~~~~~i~-~~i~~~~~~~~l~l~~~~~~~~~~~~~~~~~~ 226 (1198)
..+.++|.+. .+|.+.+.+..-...|.+.+.-.+..++..++-+.. ...+..-++...+++++..+..+..+......
T Consensus 119 ~ld~~~~~~~-~tG~l~~~idRgsraI~~vl~~~V~~i~p~~~~i~~v~~~l~~~~Ga~~~li~~~~v~~Y~a~Ti~~t~ 197 (591)
T KOG0057|consen 119 SLDLSFFLSR-GTGALNRIIDRGSRAISFVLSAMVFNIIPTLFEIALVSGILYYKFGAAFALITLGTVGAYAAFTIVVTR 197 (591)
T ss_pred hhhHHhhcCC-CcchHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHhheeEEeehh
Confidence 9999999875 899999999988888888877666665555443322 23444445565666666666566666666677
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000984 227 MISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYKSGVQEGLAAGIGLGMVMLIVFCSYALSV 306 (1198)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (1198)
+..+.+.+..++.+.+.+.+-+.|.|-.+||.||.|+.+.++|.....+..+...+.....++....-..+..+..+.++
T Consensus 198 ~Rn~fR~~~N~Adn~as~~~~dsL~Nye~VKsfNnE~~Ea~~y~~~l~~~~~~~~~~~~sl~~lnfgQ~~iFsv~~~~im 277 (591)
T KOG0057|consen 198 WRNRFRKAMNNADNSASRRAYDSLINYEIVKSFNNEEYEASRYDGSLKTYERAGLKYSSSLAFLNFGQKAIFSVALTFIM 277 (591)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHhhHHHHHHcccHHHHHHHHHHHHHHHHHhhhhHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 77777888888999999999999999999999999999999999999988888777666555544333344444455555
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCccCCCCcccCCCcccEEE
Q 000984 307 WYGGKLILEEGYNGGQVVNVMVAVLTGSMSLGEASPCLSAFGAGQAAAFKMFETINRKPEIDAYDTKGKILDDIRGDIEL 386 (1198)
Q Consensus 307 ~~g~~l~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~ 386 (1198)
+.+..-+.++.++.+.++.+.....++..++..+......+.++..-+...+........+. ..+.+....++.|+|
T Consensus 278 ~l~~~gi~~~~mtvgdlv~~n~l~~qL~~~l~~Lg~vyr~~~q~l~Dm~~~~~l~~~~~~i~---~~~~~i~~~~~~I~F 354 (591)
T KOG0057|consen 278 VLGSNGIAAGKMTVGDLVMVNSLLFQLSLPLNFLGSVYRELRQALTDMRTLFILLEVDEDIQ---EAALPIELFGGSIEF 354 (591)
T ss_pred HHHhhhhhhccccccchhhHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHhhhhhhhhhh---hccCCcccCCCcEEE
Confidence 56665567788999888766656666666776666666666666665555544332211111 111222334577999
Q ss_pred EeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcceEEEc
Q 000984 387 RDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVS 466 (1198)
Q Consensus 387 ~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~~v~ 466 (1198)
+||+|+|+. ++++|+++||+|++||+|||||+|||||||++++|+|+++ ++|+|+|||+|+++++++.+|+.|||||
T Consensus 355 ~dV~f~y~~--k~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d-~sG~I~IdG~dik~~~~~SlR~~Ig~VP 431 (591)
T KOG0057|consen 355 DDVHFSYGP--KRKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFD-YSGSILIDGQDIKEVSLESLRQSIGVVP 431 (591)
T ss_pred EeeEEEeCC--CCceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhc-cCCcEEECCeeHhhhChHHhhhheeEeC
Confidence 999999973 4679999999999999999999999999999999999999 9999999999999999999999999999
Q ss_pred CCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhhccCCCEEEE
Q 000984 467 QEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLL 546 (1198)
Q Consensus 467 Q~~~l~~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal~~~~~illl 546 (1198)
||..||++||.+||.+|++..+++++.++|+.+++||-+.++|+||+|.|||+|..||||||||++||||+++||+|+++
T Consensus 432 Qd~~LFndTIl~NI~YGn~sas~eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG~~LSGGekQrvslaRa~lKda~Il~~ 511 (591)
T KOG0057|consen 432 QDSVLFNDTILYNIKYGNPSASDEEVVEACKRAGLHDVISRLPDGYQTLVGERGLMLSGGEKQRVSLARAFLKDAPILLL 511 (591)
T ss_pred CcccccchhHHHHhhcCCCCcCHHHHHHHHHHcCcHHHHHhccccchhhHhhcccccccchHHHHHHHHHHhcCCCeEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCCCCCHHhHHHHHHHHHHHhCCCeEEEEecCcchhhccCEEEEEeCCEEEEecChhhHhcCCCchhHHHHHHHh
Q 000984 547 DEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVEDPEGAYSQLIRLQE 623 (1198)
Q Consensus 547 De~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~~ 623 (1198)
|||||+||.+||+.+.+.+.+...+||+|+|.||++++++||+|+++++|++.|.|+|+||++ +.+.|+.++..|.
T Consensus 512 DEaTS~LD~~TE~~i~~~i~~~~~~rTvI~IvH~l~ll~~~DkI~~l~nG~v~e~gth~ell~-~s~~~~~~w~~~~ 587 (591)
T KOG0057|consen 512 DEATSALDSETEREILDMIMDVMSGRTVIMIVHRLDLLKDFDKIIVLDNGTVKEYGTHSELLA-PSELYADLWTTQT 587 (591)
T ss_pred cCcccccchhhHHHHHHHHHHhcCCCeEEEEEecchhHhcCCEEEEEECCeeEEeccHHHHhh-hhhHHHHHhcccc
Confidence 999999999999999999999889999999999999999999999999999999999999999 5889999987543
|
|
| >KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-77 Score=650.43 Aligned_cols=506 Identities=29% Similarity=0.418 Sum_probs=423.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhccCCcchHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000984 116 SGIASFLQVTCWMITGERQATRIRGLYLKTILRQDVAFFDNETNTGEVVGRMSGDTVLIQDAMGEKVGKFLQLMATFLGG 195 (1198)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~f~~~~~~G~i~~r~s~D~~~i~~~~~~~~~~~~~~~~~~i~~ 195 (1198)
.+++.-+++++|..+.+-..+++-..+++|+...++.|.-++ .+|+++.-|.+-.+.+. .+...+..+...+.-+..+
T Consensus 272 sG~~~nlRtfLWi~VqQyttR~ie~~lfrHlh~LSlrwHL~r-rtGeVLrvmdrGtssvt-ll~yvVF~i~PtllDl~va 349 (790)
T KOG0056|consen 272 SGFLNNLRTFLWIPVQQYTTREIETELFRHLHNLSLRWHLNR-RTGEVLRVMDRGTSSVT-LLEYVVFQIGPTLLDLGVA 349 (790)
T ss_pred ccchhhhheeEEEEhhHhHHHHHHHHHHHHHHhhceeeeecc-cccceeehhccCcchhh-HHHHHHhhcccHHHHhhhh
Confidence 345666777888888888899999999999999999998765 89999988877666665 4444444444444433333
Q ss_pred HHH-HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcHHHHHHHHHHHHH
Q 000984 196 FLI-AFIKGWLLTLVMLSSIPLLAMSGGVMAIMISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLV 274 (1198)
Q Consensus 196 ~i~-~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~ 274 (1198)
++. ...++||..+++++++.++..+...+.....+.+++....+.+....-.+++-+..|+|-|+.|+.+.++|++...
T Consensus 350 ~vYF~~~Fn~wFgLIVfl~m~lY~~~Ti~iTeWRTk~rR~Mn~~~nesrAr~vDsllNFETVKyy~Ae~yEverYreAil 429 (790)
T KOG0056|consen 350 MVYFFIKFNIWFGLIVFLMMLLYCYVTIKITEWRTKARRKMNNSWNESRARQVDSLLNFETVKYYNAEDYEVERYREAIL 429 (790)
T ss_pred hhhhhhhHhHHHHHHHHHHHHHHhheeeeeehhhHHHHHHhhhhhhhhhhhhhhhhhcchhhhccCchhhhHHHHHHHHH
Confidence 322 2346678888777666665555545555556666677777777888889999999999999999999999999988
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000984 275 TAYKSGVQEGLAAGIGLGMVMLIVFCSYALSVWYGGKLILEEGYNGGQVVNVMVAVLTGSMSLGEASPCLSAFGAGQAAA 354 (1198)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~ 354 (1198)
+..+...+......+...+-..+.....+....+..+.+..+..+.|..+.+..+.++...++..+......++.+..-.
T Consensus 430 ~Yqk~E~ks~~sLnfLN~~Qn~Ii~lgll~gsll~aY~Vt~q~ltVGDfVlf~TYliqLy~PLN~FGT~YR~iQ~nfiDm 509 (790)
T KOG0056|consen 430 KYQKQEWKSLASLNFLNIVQNGIIGLGLLAGSLLCAYRVTEQTLTVGDFVLFLTYLIQLYMPLNFFGTYYRSIQKNFIDM 509 (790)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhHHhhhhheeeeeeeeccccccceehHHHHHHHHhCchHHHHHHHHHHHHhhhhH
Confidence 88777666544433333233333333333333334455667788888877766777888889999888899999999999
Q ss_pred HHHHHHHccCCCCCccCCCCcccCCCcccEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhc
Q 000984 355 FKMFETINRKPEIDAYDTKGKILDDIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIER 434 (1198)
Q Consensus 355 ~r~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g 434 (1198)
+++++.+.+++|..+.+ ...+....+|.|+|+||+|.|. +++|+|+||||++.||+.+|+|||||+||||++++|+|
T Consensus 510 Enmfdllkee~eVvd~P-~a~pl~~~~G~i~fsnvtF~Y~--p~k~vl~disF~v~pGktvAlVG~SGaGKSTimRlLfR 586 (790)
T KOG0056|consen 510 ENMFDLLKEEPEVVDLP-GAPPLKVTQGKIEFSNVTFAYD--PGKPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFR 586 (790)
T ss_pred HHHHHHhhcCchhhcCC-CCCCccccCCeEEEEEeEEecC--CCCceeecceEEecCCcEEEEECCCCCchhHHHHHHHH
Confidence 99999999888765433 2233445679999999999995 46799999999999999999999999999999999999
Q ss_pred cCCCCCCeEEECCeecCCcCHHHHhcceEEEcCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccc
Q 000984 435 FYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDT 514 (1198)
Q Consensus 435 ~~~~~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t 514 (1198)
+++.++|.|.|||+||+++..+.+|++||+||||..|||+||.+||.+++|.+++|++.+|++.+++||.|.++|+|++|
T Consensus 587 ffdv~sGsI~iDgqdIrnvt~~SLRs~IGVVPQDtvLFNdTI~yNIryak~~AsneevyaAAkAA~IHdrIl~fPegY~t 666 (790)
T KOG0056|consen 587 FFDVNSGSITIDGQDIRNVTQSSLRSSIGVVPQDTVLFNDTILYNIRYAKPSASNEEVYAAAKAAQIHDRILQFPEGYNT 666 (790)
T ss_pred HhhccCceEEEcCchHHHHHHHHHHHhcCcccCcceeecceeeeheeecCCCCChHHHHHHHHHhhHHHHHhcCchhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCCCCCChHHHHHHhHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhCCCeEEEEecCcchhhccCEEEEEe
Q 000984 515 LVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIH 594 (1198)
Q Consensus 515 ~v~~~g~~lSgGqkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~~d~i~~l~ 594 (1198)
.|||+|-.||||||||+|+||+++++|.|++|||+|||||..||+.||.++.++.++||.|+|+||++++.+||.|+|++
T Consensus 667 ~VGERGLkLSGGEKQRVAiARtiLK~P~iIlLDEATSALDT~tER~IQaaL~rlca~RTtIVvAHRLSTivnAD~ILvi~ 746 (790)
T KOG0056|consen 667 RVGERGLKLSGGEKQRVAIARTILKAPSIILLDEATSALDTNTERAIQAALARLCANRTTIVVAHRLSTIVNADLILVIS 746 (790)
T ss_pred hhhhcccccCCcchhhHHHHHHHhcCCcEEEEcchhhhcCCccHHHHHHHHHHHhcCCceEEEeeeehheecccEEEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEecChhhHhcCCCchhHHHHHHHhhcc
Q 000984 595 RGKIVEKGTHSKLVEDPEGAYSQLIRLQEANK 626 (1198)
Q Consensus 595 ~G~i~~~g~~~~l~~~~~~~~~~~~~~~~~~~ 626 (1198)
+|+|+|.|+|+||+.+.+|.|++|++.|....
T Consensus 747 ~G~IvErG~HeeLl~rdgG~Ya~MWq~qqa~g 778 (790)
T KOG0056|consen 747 NGRIVERGRHEELLKRDGGAYADMWQAQQAMG 778 (790)
T ss_pred CCeEeecCcHHHHHhccCCcHHHHHHHHHhcC
Confidence 99999999999999988999999998776544
|
|
| >PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-73 Score=706.59 Aligned_cols=565 Identities=29% Similarity=0.414 Sum_probs=458.9
Q ss_pred HHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000984 46 FYKLFTFADSADTALMIIGSIGAIGNGLCLPLMTLLFGDLINTFGDNQNNSETVDKVSKVAVKFVYLGIGSGIASFLQVT 125 (1198)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 125 (1198)
+++++++.++... .+.+.+++.++..++....+++++.++|...... ......+.+++++++..+..++...
T Consensus 7 ~~~l~~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~~~~~iid~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (588)
T PRK13657 7 YARVLQYLGAEKR-LGILLAVANVLLAAATFAEPILFGRIIDAISGKG-------DIFPLLAAWAGFGLFNIIAGVLVAR 78 (588)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc-------cHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555543322 2223333344444455555667778888654321 0111112222223333333443444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCChhhhhccCCcchHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 000984 126 CWMITGERQATRIRGLYLKTILRQDVAFFDNETNTGEVVGRMSGDTVLIQDAMGEKVGKFLQLMATFLGGFLIAFIKGWL 205 (1198)
Q Consensus 126 ~~~~~~~~~~~~lr~~~~~~ll~~~~~~f~~~~~~G~i~~r~s~D~~~i~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~ 205 (1198)
...+...+...+++..+++++++.|..+|++. ++|++++|+++|++.+.+.+...+..++..+..+++.+++++.++|+
T Consensus 79 ~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~-~~g~~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (588)
T PRK13657 79 HADRLAHRRRLAVLTEYFERIIQLPLAWHSQR-GSGRALHTLLRGTDALFGLWLEFMREHLATLVALVVLLPLALFMNWR 157 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCHHHHCcC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444555566677799999999999999874 99999999999999998887777777777777777778888999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHH
Q 000984 206 LTLVMLSSIPLLAMSGGVMAIMISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYKSGVQEGL 285 (1198)
Q Consensus 206 l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 285 (1198)
+++++++++|+.+++..++.+..++..++..+..++..+.+.|.++|+++||.|+.++.+.+++.+..++..+...+...
T Consensus 158 l~l~~l~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (588)
T PRK13657 158 LSLVLVVLGIVYTLITTLVMRKTKDGQAAVEEHYHDLFAHVSDAIGNVSVVQSYNRIEAETQALRDIADNLLAAQMPVLS 237 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99888888888888888888888888888888889999999999999999999999999999999888887777666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC
Q 000984 286 AAGIGLGMVMLIVFCSYALSVWYGGKLILEEGYNGGQVVNVMVAVLTGSMSLGEASPCLSAFGAGQAAAFKMFETINRKP 365 (1198)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 365 (1198)
..+....+..++..+..++.+++|.+++..+.++.|.+++++.++.....++..+...+..+..+..+.+|+.+.++.++
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~~~a~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~~~ 317 (588)
T PRK13657 238 WWALASVLNRAASTITMLAILVLGAALVQKGQLRVGEVVAFVGFATLLIGRLDQVVAFINQVFMAAPKLEEFFEVEDAVP 317 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 55555555555555566677778888899999999999887766666667777777788888888889999988887644
Q ss_pred CCCccCCCCcccCCCcccEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEE
Q 000984 366 EIDAYDTKGKILDDIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLI 445 (1198)
Q Consensus 366 ~~~~~~~~~~~~~~~~g~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i 445 (1198)
+.+... ......+..+.|+++||+|+||++ +++|+|+||+++|||+++|+|+||||||||+++|+|+++|++|+|.+
T Consensus 318 ~~~~~~-~~~~~~~~~~~I~~~~vsf~y~~~--~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~G~I~i 394 (588)
T PRK13657 318 DVRDPP-GAIDLGRVKGAVEFDDVSFSYDNS--RQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILI 394 (588)
T ss_pred ccCCCC-CCCCcCCCCCeEEEEEEEEEeCCC--CceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEE
Confidence 321111 111112234579999999999742 46999999999999999999999999999999999999999999999
Q ss_pred CCeecCCcCHHHHhcceEEEcCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCCh
Q 000984 446 DGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSG 525 (1198)
Q Consensus 446 ~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSg 525 (1198)
||+|+++++.+++|++|+||||+|++|+|||||||.++.|+.++++++.+++.+++++++.++|+|+||.+|++|.+|||
T Consensus 395 ~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~d~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~LSg 474 (588)
T PRK13657 395 DGTDIRTVTRASLRRNIAVVFQDAGLFNRSIEDNIRVGRPDATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSG 474 (588)
T ss_pred CCEEhhhCCHHHHHhheEEEecCcccccccHHHHHhcCCCCCCHHHHHHHHHHhCHHHHHHhCcccccchhcCCCCCCCH
Confidence 99999999999999999999999999999999999999888899999999999999999999999999999999999999
Q ss_pred HHHHHHhHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhCCCeEEEEecCcchhhccCEEEEEeCCEEEEecChh
Q 000984 526 GQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHS 605 (1198)
Q Consensus 526 Gqkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~ 605 (1198)
||||||+||||++++|+|+|||||||+||+++++.+.+.+++..+++|+|+||||++.++.||+|++|++|++++.|+|+
T Consensus 475 Gq~QRialARall~~~~iliLDEpts~LD~~t~~~i~~~l~~~~~~~tvIiitHr~~~~~~~D~ii~l~~G~i~~~g~~~ 554 (588)
T PRK13657 475 GERQRLAIARALLKDPPILILDEATSALDVETEAKVKAALDELMKGRTTFIIAHRLSTVRNADRILVFDNGRVVESGSFD 554 (588)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhcCCEEEEEEecHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 99999999999999999999999999999999999999999888899999999999999999999999999999999999
Q ss_pred hHhcCCCchhHHHHHHHh
Q 000984 606 KLVEDPEGAYSQLIRLQE 623 (1198)
Q Consensus 606 ~l~~~~~~~~~~~~~~~~ 623 (1198)
++++. ++.|.+++..+.
T Consensus 555 ~l~~~-~~~y~~l~~~~~ 571 (588)
T PRK13657 555 ELVAR-GGRFAALLRAQG 571 (588)
T ss_pred HHHHC-CChHHHHHHHhh
Confidence 99977 688999887543
|
|
| >TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-73 Score=708.94 Aligned_cols=552 Identities=35% Similarity=0.564 Sum_probs=462.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000984 64 GSIGAIGNGLCLPLMTLLFGDLINTFGDNQNNSETVDKVSKVAVKFVYLGIGSGIASFLQVTCWMITGERQATRIRGLYL 143 (1198)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~ 143 (1198)
.+++.++..++....+++++.+++......+. ........+++++.++..++.+.+.+.....+.+....+|..++
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~iid~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~ 98 (576)
T TIGR02204 23 ALVALLITAAATLSLPYAVRLMIDHGFSKDSS----GLLNRYFAFLLVVALVLALGTAARFYLVTWLGERVVADIRRAVF 98 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhhcccccH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344455555556666777888764322111 11222222233334445566677777778888999999999999
Q ss_pred HHHHhCChhhhhccCCcchHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 000984 144 KTILRQDVAFFDNETNTGEVVGRMSGDTVLIQDAMGEKVGKFLQLMATFLGGFLIAFIKGWLLTLVMLSSIPLLAMSGGV 223 (1198)
Q Consensus 144 ~~ll~~~~~~f~~~~~~G~i~~r~s~D~~~i~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~l~l~~~~~~~~~~~~~~~ 223 (1198)
+++++.|.++|++. +.|++++|+++|++.+++.+...+..++..+..+++.+++++.++|++++++++.+|+.+++..+
T Consensus 99 ~~l~~~~~~~~~~~-~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~l~~~~~~~ 177 (576)
T TIGR02204 99 AHLISLSPSFFDKN-RSGEVVSRLTTDTTLLQSVIGSSLSMALRNALMCIGGLIMMFITSPKLTSLVLLAVPLVLLPILL 177 (576)
T ss_pred HHHHcCCHHHHccC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999874 89999999999999999998888888888888888888899999999988888888888777788
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000984 224 MAIMISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYKSGVQEGLAAGIGLGMVMLIVFCSYA 303 (1198)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (1198)
+.+..++..++..+..++..+.+.|.++|+++||.+++|+.+..++.+..++......+..........+..++..+..+
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (576)
T TIGR02204 178 FGRRVRKLSRESQDRIADAGSYAGETLGAIRTVQAFGHEDAERSRFGGAVEKAYEAARQRIRTRALLTAIVIVLVFGAIV 257 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888889999999999999999999999999999999888777666555554444433333344445556
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCccCCCCcccCCCccc
Q 000984 304 LSVWYGGKLILEEGYNGGQVVNVMVAVLTGSMSLGEASPCLSAFGAGQAAAFKMFETINRKPEIDAYDTKGKILDDIRGD 383 (1198)
Q Consensus 304 ~~~~~g~~l~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~g~ 383 (1198)
+.+++|++++..+.++.|.++++..+......++..+...+..+..+..+.+|+.++++.+++.+..........+..+.
T Consensus 258 ~~~~~g~~~v~~g~lt~g~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~~~~~~~~~~~~ 337 (576)
T TIGR02204 258 GVLWVGAHDVIAGKMSAGTLGQFVFYAVMVAGSIGTLSEVWGELQRAAGAAERLIELLQAEPDIKAPAHPKTLPVPLRGE 337 (576)
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCCCCCCccCCcCCCce
Confidence 66778888888999999988877766666677888888889999999999999999987654422111111111223457
Q ss_pred EEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcceE
Q 000984 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIG 463 (1198)
Q Consensus 384 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~ 463 (1198)
|+++||+|+||.+.++++|+|+||+++|||+++|+|+||||||||+++|+|+++|++|+|.+||+|+.+++.+++|++++
T Consensus 338 i~~~~v~f~y~~~~~~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i~ 417 (576)
T TIGR02204 338 IEFEQVNFAYPARPDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDLRQLDPAELRARMA 417 (576)
T ss_pred EEEEEEEEECCCCCCCccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHHhce
Confidence 99999999998643467999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhhccCCCE
Q 000984 464 LVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRI 543 (1198)
Q Consensus 464 ~v~Q~~~l~~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal~~~~~i 543 (1198)
|+||+|++|+|||||||.++.|+.++++++++++.+++.++++.+|+|++|.+|++|.+||||||||++||||++++|++
T Consensus 418 ~~~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LSgGq~Qrl~laRal~~~~~i 497 (576)
T TIGR02204 418 LVPQDPVLFAASVMENIRYGRPDATDEEVEAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQRQRIAIARAILKDAPI 497 (576)
T ss_pred EEccCCccccccHHHHHhcCCCCCCHHHHHHHHHHcCcHHHHHhCCCCCCceeCCCCCcCCHHHHHHHHHHHHHHhCCCe
Confidence 99999999999999999999888899999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCCCCCCHHhHHHHHHHHHHHhCCCeEEEEecCcchhhccCEEEEEeCCEEEEecChhhHhcCCCchhHHHHHH
Q 000984 544 LLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVEDPEGAYSQLIRL 621 (1198)
Q Consensus 544 lllDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~ 621 (1198)
||||||||+||+++++.+.+.+++..+++|+|+||||++.+..+|+|++|++|++++.|+|+++.++ ++.|++++..
T Consensus 498 lilDEpts~lD~~~~~~i~~~l~~~~~~~t~IiitH~~~~~~~~d~vi~l~~g~~~~~g~~~~l~~~-~~~~~~l~~~ 574 (576)
T TIGR02204 498 LLLDEATSALDAESEQLVQQALETLMKGRTTLIIAHRLATVLKADRIVVMDQGRIVAQGTHAELIAK-GGLYARLARL 574 (576)
T ss_pred EEEeCcccccCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEEEEEECCEEEeeecHHHHHHc-CChHHHHHhh
Confidence 9999999999999999999999998889999999999999999999999999999999999999886 6788887754
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. |
| >TIGR02868 CydC thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-74 Score=705.99 Aligned_cols=524 Identities=23% Similarity=0.326 Sum_probs=426.8
Q ss_pred HHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000984 49 LFTFADSADTALMIIGSIGAIGNGLCLPLMTLLFGDLINTFGDNQNNSETVDKVSKVAVKFVYLGIGSGIASFLQVTCWM 128 (1198)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 128 (1198)
+++|.++.++. +++.+++.++..++....+++++.++|....... .. ........++++.++..++.++..++..
T Consensus 4 l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~---~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (529)
T TIGR02868 4 ILPLLQPRTRR-LVVAILLGALALGSAVALLGVSAWLISRAAEMPP---VL-YLSVAAVAVRAFGIGRAVFRYLERLVGH 78 (529)
T ss_pred HHHHHHhhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcch---hH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444443332 2233333344444444555677777776432111 00 0011111122344556667777778888
Q ss_pred HHHHHHHHHHHHHHHHHHHhCChhhhhccCCcchHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 000984 129 ITGERQATRIRGLYLKTILRQDVAFFDNETNTGEVVGRMSGDTVLIQDAMGEKVGKFLQLMATFLGGFLIAFIKGWLLTL 208 (1198)
Q Consensus 129 ~~~~~~~~~lr~~~~~~ll~~~~~~f~~~~~~G~i~~r~s~D~~~i~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~l~l 208 (1198)
..+.++..++|.++++++++.|..+|++. ++|++++|+++|++.+++.+...+..++..+..+++.++++++++|.+++
T Consensus 79 ~~~~~~~~~lr~~~~~~ll~~~~~~~~~~-~~g~~~~~l~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l 157 (529)
T TIGR02868 79 DAALRSLGRLRVRVYDRLARLALAGRRRF-QTGDLLGRLGADVDALQDLYVRVIVPLVVALVVGSAAVAAIALLSVPAAL 157 (529)
T ss_pred HHHHHHHHHHHHHHHHHhhccCccccccC-ChhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 88899999999999999999999999874 99999999999999999999888888888888888888999999999988
Q ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000984 209 VMLSSIPLLAMSGGVMA-IMISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYKSGVQEGLAA 287 (1198)
Q Consensus 209 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (1198)
++++.+|++.++...+. +..++..++.++..++..+.+.|.++|+++||+|++|+.+.+++.+..++..+...+.....
T Consensus 158 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (529)
T TIGR02868 158 VLAAGLLLAGFVAPLVSLRAARAAEVALARLRSQLYQQLTDALDGAADLVAYGALDPALAQVEAADRELLAAERRAARAT 237 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhccHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88877777665554444 33455556667778899999999999999999999999999999998888888777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCC
Q 000984 288 GIGLGMVMLIVFCSYALSVWYGGKLILEEGYNGGQVVNVMVAVLTGSMSLGEASPCLSAFGAGQAAAFKMFETINRKPEI 367 (1198)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~ 367 (1198)
+....+..++..+..++.+++|+.++..+.++.|.+++++.+......++..+......+..+..+.+|+.+.++.+++.
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~t~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~ 317 (529)
T TIGR02868 238 GLGAAAQLLAAGLAVLGALWAGGPAVADGTLAPATLAVLVLLPLAAFEAFAPLPAAAQALTRVRAAAERIEEVTGAKGPR 317 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCc
Confidence 66666666666666677778888888899999998887776666666677777777888889999999999998765542
Q ss_pred CccCCC-CcccCCCcccEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEEC
Q 000984 368 DAYDTK-GKILDDIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLID 446 (1198)
Q Consensus 368 ~~~~~~-~~~~~~~~g~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~ 446 (1198)
+..... .....+..+.|+++||+|+|+++ +++|+|+||+|++||+++||||||||||||+++|+|+++|++|+|.+|
T Consensus 318 ~~~~~~~~~~~~~~~~~I~~~~vsf~Y~~~--~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~i~ 395 (529)
T TIGR02868 318 PEGVVPAAGALGLGKPTLELRDLSFGYPGS--PPVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDPLQGEVTLD 395 (529)
T ss_pred CCCCCCCCcccCCCCceEEEEEEEEecCCC--CceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEEC
Confidence 211110 11112234579999999999753 469999999999999999999999999999999999999999999999
Q ss_pred CeecCCcCHHHHhcceEEEcCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChH
Q 000984 447 GINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGG 526 (1198)
Q Consensus 447 g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgG 526 (1198)
|+|++++ .+++|++|+||||+|++|+|||||||.+|.|++++++++++++.++++++++++|+|+||.+||+|.+||||
T Consensus 396 g~~i~~~-~~~lr~~i~~V~Q~~~lF~~TI~eNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGG 474 (529)
T TIGR02868 396 GVSVSSL-QDELRRRISVFAQDAHLFDTTVRDNLRLGRPDATDEELWAALERVGLADWLRSLPDGLDTVLGEGGARLSGG 474 (529)
T ss_pred CEEhhhH-HHHHHhheEEEccCcccccccHHHHHhccCCCCCHHHHHHHHHHcCCHHHHHhCcccccchhccccCcCCHH
Confidence 9999999 999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhCCCeEEEEecCc
Q 000984 527 QKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRL 581 (1198)
Q Consensus 527 qkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~ 581 (1198)
||||||||||++++|+|||||||||+||+++++.|++.+.+..+++|+|+||||+
T Consensus 475 QrQRiaiARall~~~~iliLDE~TSaLD~~te~~I~~~l~~~~~~~TvIiItHrl 529 (529)
T TIGR02868 475 ERQRLALARALLADAPILLLDEPTEHLDAGTESELLEDLLAALSGKTVVVITHHL 529 (529)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEecCC
Confidence 9999999999999999999999999999999999999999988899999999995
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. |
| >PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-73 Score=702.39 Aligned_cols=539 Identities=25% Similarity=0.376 Sum_probs=452.4
Q ss_pred HHHHHHHHHHhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhc
Q 000984 77 LMTLLFGDLINTFGDNQNNSETVDKVSKVAVKFVYLGIGSGIASFLQVTCWMITGERQATRIRGLYLKTILRQDVAFFDN 156 (1198)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~f~~ 156 (1198)
+.|++++.++|........ ......+...++++.++..++.++..+.....+.+...++|..+++++++.|+++|++
T Consensus 13 ~~p~~~~~iid~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~~ 89 (569)
T PRK10789 13 IPPKVVGIIVDGVTEQHMT---TGQILMWIGTMVLIAVVVYLLRYVWRVLLFGASYQLAVELREDFYRQLSRQHPEFYLR 89 (569)
T ss_pred HHHHHHHHHHHHhccCCcc---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHcC
Confidence 3344677777765322111 1112222233333444555666777777777889999999999999999999999987
Q ss_pred cCCcchHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000984 157 ETNTGEVVGRMSGDTVLIQDAMGEKVGKFLQLMATFLGGFLIA-FIKGWLLTLVMLSSIPLLAMSGGVMAIMISKMSSRG 235 (1198)
Q Consensus 157 ~~~~G~i~~r~s~D~~~i~~~~~~~~~~~~~~~~~~i~~~i~~-~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (1198)
. ++|++++|+++|++.+.......+..++..+..+++.++++ ++++|.+++++++.+|+++++...+.+..++..++.
T Consensus 90 ~-~~g~i~srl~~Dv~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~ 168 (569)
T PRK10789 90 H-RTGDLMARATNDVDRVVFAAGEGVLTLVDSLVMGCAVLIVMSTQISWQLTLLALLPMPVMAIMIKRYGDQLHERFKLA 168 (569)
T ss_pred C-CHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4 99999999999999999877776777777655555555444 579999999888888988888888888888777778
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000984 236 QGAYAKAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYKSGVQEGLAAGIGLGMVMLIVFCSYALSVWYGGKLILE 315 (1198)
Q Consensus 236 ~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~ 315 (1198)
++..++..+.+.|.++|+++||+|++|+.+.+++.+...+..+...+.....+....+...+..+..++.+++|.+++..
T Consensus 169 ~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~lv~~ 248 (569)
T PRK10789 169 QAAFSSLNDRTQESLTSIRMIKAFGLEDRQSALFAADAEDTGKKNMRVARIDARFDPTIYIAIGMANLLAIGGGSWMVVN 248 (569)
T ss_pred HHHHHHHHHHHHHHHcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 88888899999999999999999999999999999888877777666666555544444444555556667788888889
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCccCCCCcccCCCcccEEEEeEEEEcCC
Q 000984 316 EGYNGGQVVNVMVAVLTGSMSLGEASPCLSAFGAGQAAAFKMFETINRKPEIDAYDTKGKILDDIRGDIELRDVYFSYPA 395 (1198)
Q Consensus 316 ~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~v~~~y~~ 395 (1198)
+.++.|.+++++.+......++..+...+..+..+..+.+|+.+.++.+++.+... ...++..+.|+++|++|+|+.
T Consensus 249 g~lt~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~ll~~~~~~~~~~---~~~~~~~~~I~~~~v~~~y~~ 325 (569)
T PRK10789 249 GSLTLGQLTSFVMYLGLMIWPMLALAWMFNIVERGSAAYSRIRAMLAEAPVVKDGS---EPVPEGRGELDVNIRQFTYPQ 325 (569)
T ss_pred CCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCC---CCCCCCCCcEEEEEEEEECCC
Confidence 99999999887776666667777778888889999999999999987654422111 111223467999999999975
Q ss_pred CCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcceEEEcCCCCCCccc
Q 000984 396 RPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGS 475 (1198)
Q Consensus 396 ~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~t 475 (1198)
. ++++|+|+||+++|||+++|+||||||||||+++|+|+++|++|+|.+||+++++++.+++|++++||||+|++|++|
T Consensus 326 ~-~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~t 404 (569)
T PRK10789 326 T-DHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRSRLAVVSQTPFLFSDT 404 (569)
T ss_pred C-CCccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEHhhCCHHHHHhheEEEccCCeecccc
Confidence 3 357999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhhccCCCEEEEeCCCCCCCH
Q 000984 476 IKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDA 555 (1198)
Q Consensus 476 i~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal~~~~~illlDe~ts~lD~ 555 (1198)
+||||.++.++.++++++++++.+++++++.++|+|++|.+|++|.+||||||||++||||++++|+|+|||||||+||+
T Consensus 405 i~~Ni~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSgGq~qRi~lARall~~~~illlDEpts~LD~ 484 (569)
T PRK10789 405 VANNIALGRPDATQQEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRISIARALLLNAEILILDDALSAVDG 484 (569)
T ss_pred HHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECccccCCH
Confidence 99999999888899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhHHHHHHHHHHHhCCCeEEEEecCcchhhccCEEEEEeCCEEEEecChhhHhcCCCchhHHHHHHHhh
Q 000984 556 ESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVEDPEGAYSQLIRLQEA 624 (1198)
Q Consensus 556 ~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~~~ 624 (1198)
++++.+.+.+++..+++|+|+||||++.++.||+|++|++|++++.|+|++++++ ++.|++++..++.
T Consensus 485 ~~~~~i~~~l~~~~~~~tii~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~-~~~y~~l~~~~~~ 552 (569)
T PRK10789 485 RTEHQILHNLRQWGEGRTVIISAHRLSALTEASEILVMQHGHIAQRGNHDQLAQQ-SGWYRDMYRYQQL 552 (569)
T ss_pred HHHHHHHHHHHHHhCCCEEEEEecchhHHHcCCEEEEEeCCEEEEecCHHHHHHc-CChHHHHHHHhhh
Confidence 9999999999998889999999999999999999999999999999999999987 6889999876643
|
|
| >TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-74 Score=764.40 Aligned_cols=498 Identities=19% Similarity=0.295 Sum_probs=407.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhccCCcchHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000984 115 GSGIASFLQVTCWMITGERQATRIRGLYLKTILRQDVAFFDNETNTGEVVGRMSGDTVLIQDAMGEKVGKFLQLMATFLG 194 (1198)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~f~~~~~~G~i~~r~s~D~~~i~~~~~~~~~~~~~~~~~~i~ 194 (1198)
+..++.+++.+++.+.+.+++.++|..++++++++|++||++ +++|+++||+++|++.+++.++..+..++..+..+++
T Consensus 937 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ff~~-~~~G~ilnRfs~Di~~id~~l~~~~~~~~~~~~~~i~ 1015 (1490)
T TIGR01271 937 SVLALGFFRGLPLVHTLLTVSKRLHEQMLHSVLQAPMAVLNT-MKAGRILNRFTKDMAIIDDMLPLTLFDFIQLTLIVLG 1015 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCC-CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566677777888889999999999999999999999997 5999999999999999999999999999999999999
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcHHHHHHHHHHHHH
Q 000984 195 GFLIAFIKGWLLTLVMLSSIPLLAMSGGVMAIMISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLV 274 (1198)
Q Consensus 195 ~~i~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~ 274 (1198)
.++++++++|++++++++++.+++++..++.+..++..+......++..+++.|++.|+.+||+|++++.+.+++.+..+
T Consensus 1016 ~l~~i~~~~p~l~l~~~~l~~~~~~~~~~~~~~~r~l~~~~~~~~s~l~~~~~Etl~Gl~tIraf~~~~~~~~~~~~~~~ 1095 (1490)
T TIGR01271 1016 AIFVVSVLQPYIFIAAIPVAVIFIMLRAYFLRTSQQLKQLESEARSPIFSHLITSLKGLWTIRAFGRQSYFETLFHKALN 1095 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCHHHHHHhCCcHHHHHHHHHHHH
Confidence 88888888887665544444444445555666666666666777888999999999999999999999999999988877
Q ss_pred HHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000984 275 TAYKSGVQEG---LAAGIGLGMVMLIVFCSYALSVWYGGKLILEEGYNGGQVVNVMVAVLTGSMSLGEASPCLSAFGAGQ 351 (1198)
Q Consensus 275 ~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~ 351 (1198)
...+...... .+.+....+...+..+. ++.++++.. ....|.+..++.+.+....++..+...+..+...+
T Consensus 1096 ~~~~~~~~~~~~~~wl~~~~~~i~~~~~~~-~~~l~~~~~-----~~~~g~~g~~l~~~~~l~~~l~~l~~~~~~le~~~ 1169 (1490)
T TIGR01271 1096 LHTANWFLYLSTLRWFQMRIDIIFVFFFIA-VTFIAIGTN-----QDGEGEVGIILTLAMNILSTLQWAVNSSIDVDGLM 1169 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHh-----cCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5544332222 22222222211111111 111122221 22333333333344444455666667777888899
Q ss_pred HHHHHHHHHHccCCCCCccCC----------------CCcccCCCcccEEEEeEEEEcCCCCCCccccceeEEEeCCCEE
Q 000984 352 AAAFKMFETINRKPEIDAYDT----------------KGKILDDIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTA 415 (1198)
Q Consensus 352 ~~~~r~~~~~~~~~~~~~~~~----------------~~~~~~~~~g~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~ 415 (1198)
.+.+|+.++++.++|...... ..++.|+..|.|+|+||+|+|+.. .+++|+|+||+|+|||++
T Consensus 1170 ~s~eRi~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~wp~~g~I~f~nVs~~Y~~~-~~~vL~~is~~I~~Gekv 1248 (1490)
T TIGR01271 1170 RSVSRVFKFIDLPQEEPRPSGGGGKYQLSTVLVIENPHAQKCWPSGGQMDVQGLTAKYTEA-GRAVLQDLSFSVEGGQRV 1248 (1490)
T ss_pred HHHHHHHHHhcCCCccccccccccccccccccccccCCCCCCCCCCCeEEEEEEEEEeCCC-CcceeeccEEEEcCCCEE
Confidence 999999999876554321100 011124556899999999999753 468999999999999999
Q ss_pred EEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcceEEEcCCCCCCcccHHHHHhcCCCCCCHHHHHHH
Q 000984 416 ALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVA 495 (1198)
Q Consensus 416 ~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~Ni~~~~~~~~~~~~~~~ 495 (1198)
||||+||||||||+++|+|+++ .+|+|.|||+|+++++++++|++|+||||||.||+||||+||+.. ..++++++|++
T Consensus 1249 aIvGrSGsGKSTLl~lL~rl~~-~~G~I~IdG~di~~i~~~~lR~~is~IpQdp~LF~GTIR~NLdp~-~~~tdeei~~a 1326 (1490)
T TIGR01271 1249 GLLGRTGSGKSTLLSALLRLLS-TEGEIQIDGVSWNSVTLQTWRKAFGVIPQKVFIFSGTFRKNLDPY-EQWSDEEIWKV 1326 (1490)
T ss_pred EEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEcccCCHHHHHhceEEEeCCCccCccCHHHHhCcc-cCCCHHHHHHH
Confidence 9999999999999999999997 799999999999999999999999999999999999999999854 46799999999
Q ss_pred HHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhCCCeEE
Q 000984 496 TELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTV 575 (1198)
Q Consensus 496 ~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i 575 (1198)
++.+++++++.++|+|+||.|||+|.+|||||||||||||||+++|+|||||||||+||++|++.|++.|++.++++|+|
T Consensus 1327 L~~~~L~~~i~~lp~GLdt~v~e~G~nLSgGQrQrL~LARALLr~~~ILlLDEaTS~lD~~Te~~I~~~L~~~~~~~TvI 1406 (1490)
T TIGR01271 1327 AEEVGLKSVIEQFPDKLDFVLVDGGYVLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQIIRKTLKQSFSNCTVI 1406 (1490)
T ss_pred HHHCCCHHHHHhCccccccccccCCCcCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecCcchhhccCEEEEEeCCEEEEecChhhHhcCCCchhHHHHHHHh
Q 000984 576 IVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVEDPEGAYSQLIRLQE 623 (1198)
Q Consensus 576 ~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~~ 623 (1198)
+||||++++.+||+|+||++|+|+|.|+|++|+++ ++.|+++++...
T Consensus 1407 ~IaHRl~ti~~~DrIlvL~~G~ivE~g~p~~Ll~~-~~~f~~l~~~~~ 1453 (1490)
T TIGR01271 1407 LSEHRVEALLECQQFLVIEGSSVKQYDSIQKLLNE-TSLFKQAMSAAD 1453 (1490)
T ss_pred EEecCHHHHHhCCEEEEEECCEEEEeCCHHHHHcC-CcHHHHHHHHhC
Confidence 99999999999999999999999999999999975 789999987554
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. |
| >COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-73 Score=636.68 Aligned_cols=503 Identities=23% Similarity=0.365 Sum_probs=420.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhccCCcchHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 000984 111 YLGIGSGIASFLQVTCWMITGERQATRIRGLYLKTILRQDVAFFDNETNTGEVVGRMSGDTVLIQDAMGEKVGKFLQLMA 190 (1198)
Q Consensus 111 ~l~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~f~~~~~~G~i~~r~s~D~~~i~~~~~~~~~~~~~~~~ 190 (1198)
++|++..+..|......+-...++-..+|.++|+++...+..-.... .+|+++||+..|++.+|+.+-..+..++..+.
T Consensus 66 ~~aI~Rt~~RY~ERlvsH~AtfrvL~~lRv~~f~kl~p~sp~~~~r~-r~gdLL~RLvaDVd~Ld~lyLRvi~P~~~a~~ 144 (573)
T COG4987 66 GLAILRTAARYVERLVSHDATFRVLSALRVRLFEKLEPLSPALLLRY-RSGDLLNRLVADVDALDNLYLRVIAPAVVALV 144 (573)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccCChHHHHhc-ChHhHHHHHHhhHHHHhhHHHHHHhhHHHHHH
Confidence 57788888899988888888899999999999999999888777654 89999999999999999999888888888877
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcHHHHHHHH
Q 000984 191 TFLGGFLIAFIKGWLLTLVMLSSI-PLLAMSGGVMAIMISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQAMSNY 269 (1198)
Q Consensus 191 ~~i~~~i~~~~~~~~l~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~ 269 (1198)
.+++..+...+++|.+++.+...+ .+.+++..++.++-++..++....++...+.+.|.+.|....+.||.++.+.+.+
T Consensus 145 ~~~~~~i~L~f~~~~~Alll~~~ll~~lli~P~~~~~~~~~~~~~l~~~r~~lr~~~td~v~G~~EL~~~g~~~~~~~~l 224 (573)
T COG4987 145 LIAVVTIGLSFFSIPLALLLGLILLLLLLIIPTLFYRAGRKFGAHLAQGRAALRSQFTDWVQGQAELLIFGAEDAYRTAL 224 (573)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHcccHHHHHHHH
Confidence 777776777677887766444333 3344455556666677777777788889999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
Q 000984 270 KKFLVTAYKSGVQEGLAAGIGLGMVMLIVFCSYA-LSVWYGGKLILEEGYNGGQVVNVMVAVLTGSMSLGEAS-PCLSAF 347 (1198)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~l~~~~~~~~~~~~~~~~~~l~~~~~l~~~~-~~~~~~ 347 (1198)
.+.-....+...+...+.++......++.....+ ..+|.++. +..|..+.......++.++....++..+. ..+...
T Consensus 225 ~~~e~~~~~~q~k~~~~~~~~~a~~~l~~g~~v~~~l~w~a~~-~~~G~~~~~~aa~~ll~~f~~~eaf~~L~~~A~~~l 303 (573)
T COG4987 225 EATEASWLKAQRKQARFTGLSDAILLLIAGLLVIGLLLWMAAQ-VGAGALAQPGAALALLVIFAALEAFEPLAPGAFQHL 303 (573)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CcCCCcchhHHHHHHHHHHHHHHHHhhhcchhHHHh
Confidence 9888887777777777777766655544443333 44555432 23344442222222222233333333333 345677
Q ss_pred HHHHHHHHHHHHHHccCCCCCccCCCCcccCCCcccEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHH
Q 000984 348 GAGQAAAFKMFETINRKPEIDAYDTKGKILDDIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKST 427 (1198)
Q Consensus 348 ~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSt 427 (1198)
.+...++.|+.+..+++++...++ .+.+.+.+ .++++||+|+||++ .+++|+|+||++++||++||+|+|||||||
T Consensus 304 gq~~~Sa~Rl~~i~~q~~e~~~~~--~~~~~~~~-~l~~~~vsF~y~~~-~~~~L~~~~l~l~~GEkvAIlG~SGsGKST 379 (573)
T COG4987 304 GQVIASARRLNDILDQKPEVTFPD--EQTATTGQ-ALELRNVSFTYPGQ-QTKALKNFNLTLAQGEKVAILGRSGSGKST 379 (573)
T ss_pred hHHHHHHHHHhhhccCCcccCCCc--cccCCccc-eeeeccceeecCCC-ccchhhccceeecCCCeEEEECCCCCCHHH
Confidence 788889999999998877654331 11111222 69999999999865 468999999999999999999999999999
Q ss_pred HHHHHhccCCCCCCeEEECCeecCCcCHHHHhcceEEEcCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHh
Q 000984 428 VISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDK 507 (1198)
Q Consensus 428 l~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~ 507 (1198)
|+++|.|-++|++|+|.++|.+++.++.+++|+.|++++|.+++|++|+|||+.+++|+++||+++++++.+++++.+++
T Consensus 380 llqLl~~~~~~~~G~i~~~g~~~~~l~~~~~~e~i~vl~Qr~hlF~~Tlr~NL~lA~~~AsDEel~~aL~qvgL~~l~~~ 459 (573)
T COG4987 380 LLQLLAGAWDPQQGSITLNGVEIASLDEQALRETISVLTQRVHLFSGTLRDNLRLANPDASDEELWAALQQVGLEKLLES 459 (573)
T ss_pred HHHHHHhccCCCCCeeeECCcChhhCChhhHHHHHhhhccchHHHHHHHHHHHhhcCCCCCHHHHHHHHHHcCHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCccchhcCCCCCCChHHHHHHhHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhCCCeEEEEecCcchhhcc
Q 000984 508 LPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNA 587 (1198)
Q Consensus 508 l~~g~~t~v~~~g~~lSgGqkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~~ 587 (1198)
.|+|++|.+||+|.+||||||||++|||++++|++++||||||.+||+.||+.+.+.+.+..++||+|+||||+..++.|
T Consensus 460 ~p~gl~t~lge~G~~LSGGE~rRLAlAR~LL~dapl~lLDEPTegLD~~TE~~vL~ll~~~~~~kTll~vTHrL~~le~~ 539 (573)
T COG4987 460 APDGLNTWLGEGGRRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLALLFEHAEGKTLLMVTHRLRGLERM 539 (573)
T ss_pred ChhhhhchhccCCCcCCchHHHHHHHHHHHHcCCCeEEecCCcccCChhhHHHHHHHHHHHhcCCeEEEEecccccHhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEEeCCEEEEecChhhHhcCCCchhHHHHH
Q 000984 588 DMIAVIHRGKIVEKGTHSKLVEDPEGAYSQLIR 620 (1198)
Q Consensus 588 d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~ 620 (1198)
|||+|||+|+++|+|+|.+|+++ ++.|+++++
T Consensus 540 drIivl~~Gkiie~G~~~~Ll~~-~g~~~~l~q 571 (573)
T COG4987 540 DRIIVLDNGKIIEEGTHAELLAN-NGRYKRLYQ 571 (573)
T ss_pred CEEEEEECCeeeecCCHHhhhcc-ccHHHHHhc
Confidence 99999999999999999999996 789988875
|
|
| >TIGR01192 chvA glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-72 Score=693.57 Aligned_cols=564 Identities=27% Similarity=0.387 Sum_probs=460.3
Q ss_pred HHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000984 46 FYKLFTFADSADTALMIIGSIGAIGNGLCLPLMTLLFGDLINTFGDNQNNSETVDKVSKVAVKFVYLGIGSGIASFLQVT 125 (1198)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 125 (1198)
++++++|.++.++ .+++++++.++..++....|++++.++|....... .. ...+.+++++++..+..++...
T Consensus 7 ~~~l~~~l~~~k~-~~~~~~~~~~~~~~~~~~~p~~~~~iid~~~~~~~------~~-~~~~~~~~~~~~~~~~~~~~~~ 78 (585)
T TIGR01192 7 YVRALSYLNVHKN-RVLLIVIANITLAAITIAEPILFGRIIDAISSKSD------VL-PTLALWAGFGVFNTIAYVLVAR 78 (585)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc------HH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566554433 33345555556666677777788888887543211 01 1111112222333333344344
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCChhhhhccCCcchHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 000984 126 CWMITGERQATRIRGLYLKTILRQDVAFFDNETNTGEVVGRMSGDTVLIQDAMGEKVGKFLQLMATFLGGFLIAFIKGWL 205 (1198)
Q Consensus 126 ~~~~~~~~~~~~lr~~~~~~ll~~~~~~f~~~~~~G~i~~r~s~D~~~i~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~ 205 (1198)
.......+...++|..++++++++|+++|++. ++|++++|+++|++.+.+.+...+...+..+..+++.+++++.++|.
T Consensus 79 ~~~~~~~~~~~~lr~~~~~~l~~l~~~~~~~~-~~g~~~s~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 157 (585)
T TIGR01192 79 EADRLAHGRRATLLTEAFGRIISMPLSWHQQR-GTSNALHTLLRATETLFGLWLEFMRQHLATFVALFLLIPTAFAMDWR 157 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCHHHhCCC-ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555566677799999999999999874 89999999999999999888877777777777777777888999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHH
Q 000984 206 LTLVMLSSIPLLAMSGGVMAIMISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYKSGVQEGL 285 (1198)
Q Consensus 206 l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 285 (1198)
+++++++++|+++++..++.+..++..++..+..++..+.+.|.++|+++||+|+.|+.+.+++.+..++..+...+...
T Consensus 158 l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (585)
T TIGR01192 158 LSIVLMVLGILYILIAKLVMQRTKNGQAAVEHHYHNVFKHVSDSISNVSVVHSYNRIEAETSALKQFTNNLLSAQYPVLD 237 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999888898888888888888887777788888999999999999999999999999999998888777666665555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC
Q 000984 286 AAGIGLGMVMLIVFCSYALSVWYGGKLILEEGYNGGQVVNVMVAVLTGSMSLGEASPCLSAFGAGQAAAFKMFETINRKP 365 (1198)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 365 (1198)
..+....+..++..+..++++++|++++..+.++.|.+++++.+......++..+...+..+..+..+.+|+.+.++.++
T Consensus 238 ~~~~~~~~~~~~~~~~~~~v~~~g~~~v~~g~it~g~l~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~ri~~~~~~~~ 317 (585)
T TIGR01192 238 WWALASGLNRMASTISMMCILVIGTVLVIKGELSVGEVIAFIGFANLLIGRLDQMSGFITQIFEARAKLEDFFDLEDSVF 317 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence 55555444445555556667778888888999999998887666666666777777778888888899999998887644
Q ss_pred CCCccCCCCcccCCCcccEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEE
Q 000984 366 EIDAYDTKGKILDDIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLI 445 (1198)
Q Consensus 366 ~~~~~~~~~~~~~~~~g~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i 445 (1198)
+.+... .........+.|+++||+|+|+++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.+
T Consensus 318 ~~~~~~-~~~~~~~~~~~i~~~~v~~~y~~~--~~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~ 394 (585)
T TIGR01192 318 QREEPA-DAPELPNVKGAVEFRHITFEFANS--SQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILI 394 (585)
T ss_pred cccCCc-cCCCCCCCCCeEEEEEEEEECCCC--CccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCCCCCCEEEE
Confidence 322111 111111234579999999999742 46899999999999999999999999999999999999999999999
Q ss_pred CCeecCCcCHHHHhcceEEEcCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCCh
Q 000984 446 DGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSG 525 (1198)
Q Consensus 446 ~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSg 525 (1198)
||.|+++++.+++|++++||||+|++|++|++|||.++.++.++++++++++.+++++++.++|+|++|.+|++|.+|||
T Consensus 395 ~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LSg 474 (585)
T TIGR01192 395 DGIDINTVTRESLRKSIATVFQDAGLFNRSIRENIRLGREGATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSG 474 (585)
T ss_pred CCEEhhhCCHHHHHhheEEEccCCccCcccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccchhcCCCCCCCH
Confidence 99999999999999999999999999999999999999888899999999999999999999999999999999999999
Q ss_pred HHHHHHhHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhCCCeEEEEecCcchhhccCEEEEEeCCEEEEecChh
Q 000984 526 GQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHS 605 (1198)
Q Consensus 526 Gqkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~ 605 (1198)
|||||++||||++++|+++|||||||+||+++++.+.+.+++..+++|+|+||||++.+..||+|++|++|++++.|+|+
T Consensus 475 Gq~qrl~lARall~~p~ililDEpts~LD~~~~~~i~~~l~~~~~~~tvI~isH~~~~~~~~d~i~~l~~G~i~~~g~~~ 554 (585)
T TIGR01192 475 GERQRLAIARAILKNAPILVLDEATSALDVETEARVKNAIDALRKNRTTFIIAHRLSTVRNADLVLFLDQGRLIEKGSFQ 554 (585)
T ss_pred HHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEEcChHHHHcCCEEEEEECCEEEEECCHH
Confidence 99999999999999999999999999999999999999999888899999999999999999999999999999999999
Q ss_pred hHhcCCCchhHHHHHHH
Q 000984 606 KLVEDPEGAYSQLIRLQ 622 (1198)
Q Consensus 606 ~l~~~~~~~~~~~~~~~ 622 (1198)
+++++ ++.|++++..+
T Consensus 555 ~l~~~-~~~y~~l~~~~ 570 (585)
T TIGR01192 555 ELIQK-DGRFYKLLRRS 570 (585)
T ss_pred HHHHC-CChHHHHHHhC
Confidence 99987 68899988754
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related. |
| >TIGR02857 CydD thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-72 Score=684.70 Aligned_cols=523 Identities=24% Similarity=0.342 Sum_probs=434.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000984 63 IGSIGAIGNGLCLPLMTLLFGDLINTFGDNQNNSETVDKVSKVAVKFVYLGIGSGIASFLQVTCWMITGERQATRIRGLY 142 (1198)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~ 142 (1198)
+++++.++..++.+..+++++.++|........ ......+...+++++++..++.+++.+.....+.+...++|..+
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~iid~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l 83 (529)
T TIGR02857 7 LLGLLGALGALLIIAQAWLLARVIDGLISAGEP---LAELLPALGALALAVLLRALLGWLGERAAARAAAAVKSQLRERL 83 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCC---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555566666777888888865311111 12222333444556666778888888888889999999999999
Q ss_pred HHHHHhCChhhhhccCCcchHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 000984 143 LKTILRQDVAFFDNETNTGEVVGRMSGDTVLIQDAMGEKVGKFLQLMATFLGGFLIAFIKGWLLTLVMLSSIPLLAMSGG 222 (1198)
Q Consensus 143 ~~~ll~~~~~~f~~~~~~G~i~~r~s~D~~~i~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~l~l~~~~~~~~~~~~~~ 222 (1198)
++++++.|..+|++. ++|++++|+++|++.+++.+...+..++..+..+++.+++++.++|.+++++++.+|+..++..
T Consensus 84 ~~~l~~~~~~~~~~~-~~g~~~~~l~~di~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~l~~~~l~~~~~~ 162 (529)
T TIGR02857 84 LAAVAALGPGWLQGR-PSGELATLALEGVEALDGYFARYLPQLVLAVIIPLAILAAVFPADWISGLILLLTAPLIPIFMI 162 (529)
T ss_pred HHHHHhCCchhhccC-ChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 999999999999874 9999999999999999999888788888888888888888999999999888888888877777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000984 223 VMAIMISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYKSGVQEGLAAGIGLGMVMLIVFCSY 302 (1198)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (1198)
++.+..++..++.++..++..+.+.|.++|+++||+|+.|+.+.+++.+..++..+...+..........+..++..+..
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (529)
T TIGR02857 163 LIGWAAQAAARKQWAALSRLSGHFLDRLRGLPTLKLFGRAKAQAAAIARSSEEYRERTMRVLRIAFLSSAVLELFATLSV 242 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777888888899999999999999999999999999999988777766665555444443333333333333
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCccCCCCcccCCCcc
Q 000984 303 ALSVWYGGKLILEEGYNGGQVVNVMVAVLTGSMSLGEASPCLSAFGAGQAAAFKMFETINRKPEIDAYDTKGKILDDIRG 382 (1198)
Q Consensus 303 ~~~~~~g~~l~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~g 382 (1198)
++.+.+++..+..+.++.|.+++++.+......++..+...+..+..+..+.+|+.+.++.+++... . .....+..+
T Consensus 243 ~~~~~~~~~~~~~g~~t~g~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~ll~~~~~~~~-~--~~~~~~~~~ 319 (529)
T TIGR02857 243 ALVAVYIGFRLLAGDLDLATGLFVLLLAPEFYLPLRQLGADYHARADGVAAAEALFAVLDAPRPLAG-K--APVTAAPAP 319 (529)
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCC-C--cCCCCCCCC
Confidence 3333344555567889999887766655555667777777888899999999999999875432111 1 111111235
Q ss_pred cEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcce
Q 000984 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKI 462 (1198)
Q Consensus 383 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i 462 (1198)
.|+++||+|+||+. ++++|+|+||+|+|||+++|+||||||||||+++|+|+++|++|+|.+||+|+++++.+++|+++
T Consensus 320 ~i~~~~v~f~y~~~-~~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I~~~g~~i~~~~~~~lr~~i 398 (529)
T TIGR02857 320 SLEFSGLSVAYPGR-RAPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADSWRDQI 398 (529)
T ss_pred eEEEEEEEEECCCC-CcccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEehhhCCHHHHHhhe
Confidence 79999999999854 35799999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEcCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhhccCCC
Q 000984 463 GLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPR 542 (1198)
Q Consensus 463 ~~v~Q~~~l~~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal~~~~~ 542 (1198)
+||+|+|++|++||||||.++.++.++++++++++.++++++++++|+|+||.+||+|.+||||||||++||||++++|+
T Consensus 399 ~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~qri~laRal~~~~~ 478 (529)
T TIGR02857 399 AWVPQHPFLFAGTIAENIRLARPDASDAEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQRLALARAFLRDAP 478 (529)
T ss_pred EEEcCCCcccCcCHHHHHhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhccccccCCHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999999988889999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHhHHHHHHHHHHHhCCCeEEEEecCcchhhccCEEEEE
Q 000984 543 ILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVI 593 (1198)
Q Consensus 543 illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~~d~i~~l 593 (1198)
|+|||||||+||+++++.+.+.+++..+++|+|+||||+++++.||+|++|
T Consensus 479 ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~~l 529 (529)
T TIGR02857 479 LLLLDEPTAHLDAETEALVTEALRALAQGRTVLLVTHRLALAERADRIVVL 529 (529)
T ss_pred EEEEeCcccccCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHhCCEEEeC
Confidence 999999999999999999999999988899999999999999999999986
|
Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD |
| >TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-70 Score=669.21 Aligned_cols=522 Identities=22% Similarity=0.298 Sum_probs=433.0
Q ss_pred HHHHHHHHHHHHHHHhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCh
Q 000984 72 GLCLPLMTLLFGDLINTFGDNQNNSETVDKVSKVAVKFVYLGIGSGIASFLQVTCWMITGERQATRIRGLYLKTILRQDV 151 (1198)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~ 151 (1198)
.++....|++++.++|......+. .....+...++++.++..++.+++.++....+.+...++|.++++++++.|+
T Consensus 19 ~~~~l~~p~~~~~iid~~~~~~~~----~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~ 94 (544)
T TIGR01842 19 NILMLAPPLYMLQVYDRVLTSGSV----PTLLMLTVLALGLYLFLGLLDALRSFVLVRIGEKLDGALNQPIFAASFSATL 94 (544)
T ss_pred HHHHHHHHHHHHHHHHHhccCCch----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc
Confidence 334444555777788865422111 1222233334444555667778888888888999999999999999999998
Q ss_pred hhhhccCCcchHHHHHHhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000984 152 AFFDNETNTGEVVGRMSGDTVLIQDAMGE-KVGKFLQLMATFLGGFLIAFIKGWLLTLVMLSSIPLLAMSGGVMAIMISK 230 (1198)
Q Consensus 152 ~~f~~~~~~G~i~~r~s~D~~~i~~~~~~-~~~~~~~~~~~~i~~~i~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~ 230 (1198)
. ..+...+++++|++.+++.+.. .+..++..++.++ .++++++++|++++++++.+|+++++..+..+..++
T Consensus 95 ~------~~~~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~l~li~l~~~~l~~~i~~~~~~~~~~ 167 (544)
T TIGR01842 95 R------RGKIDGLQALRDLDQLRQFLTGPGLFAFFDAPWMPI-YLLVCFLLHPWIGILALGGAVVLVGLALLNNRATKK 167 (544)
T ss_pred c------CccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-HHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 3 2356688899999999988766 4445555555444 346678889998888887778777776677777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000984 231 MSSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYKSGVQEGLAAGIGLGMVMLIVFCSYALSVWYGG 310 (1198)
Q Consensus 231 ~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 310 (1198)
..++.++..++..+.+.|.++|+++||+|++|+.+.++|.+..++..+...+.....+....+..++.....++.+++|+
T Consensus 168 ~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 247 (544)
T TIGR01842 168 PLKEATEASIRANNLADSALRNAEVIEAMGMMGNLTKRWGRFHSKYLSAQSAASDRAGMLSNLSKYFRIVLQSLVLGLGA 247 (544)
T ss_pred HHHHHHHHHHHHhhHHHHHHhcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77778888899999999999999999999999999999998888877776666655555555444554555556677888
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCccCCCCcccCCCcccEEEEeEE
Q 000984 311 KLILEEGYNGGQVVNVMVAVLTGSMSLGEASPCLSAFGAGQAAAFKMFETINRKPEIDAYDTKGKILDDIRGDIELRDVY 390 (1198)
Q Consensus 311 ~l~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~v~ 390 (1198)
.++..+.++.|.+++++.+......++..+......+..+..+.+|+.++++.+++.++. ...++..+.|+++|++
T Consensus 248 ~l~~~g~it~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~----~~~~~~~~~i~~~~v~ 323 (544)
T TIGR01842 248 YLAIDGEITPGMMIAGSILVGRALAPIDGAIGGWKQFSGARQAYKRLNELLANYPSRDPA----MPLPEPEGHLSVENVT 323 (544)
T ss_pred HHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccCC----CCCCCCCCeEEEEEEE
Confidence 889999999999988777666666788888888888999999999999998765442211 1112234579999999
Q ss_pred EEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcceEEEcCCCC
Q 000984 391 FSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPV 470 (1198)
Q Consensus 391 ~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~ 470 (1198)
|+|++. ++++|+|+||+++|||+++|+||||||||||+++|+|+++|++|+|.+||+++.+++.+.+|++++||||+|+
T Consensus 324 ~~y~~~-~~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~ 402 (544)
T TIGR01842 324 IVPPGG-KKPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDRETFGKHIGYLPQDVE 402 (544)
T ss_pred EEcCCC-CccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEehhhCCHHHHhhheEEecCCcc
Confidence 999743 3579999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhhccCCCEEEEeCCC
Q 000984 471 LFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEAT 550 (1198)
Q Consensus 471 l~~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal~~~~~illlDe~t 550 (1198)
+|++|++|||.++.++.++++++++++.++++++++++|+|++|.+|++|.+||||||||++||||++++|++|||||||
T Consensus 403 lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGq~qrl~lARall~~~~ililDEpt 482 (544)
T TIGR01842 403 LFPGTVAENIARFGENADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIALARALYGDPKLVVLDEPN 482 (544)
T ss_pred cccccHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 99999999999877778999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHhHHHHHHHHHHHh-CCCeEEEEecCcchhhccCEEEEEeCCEEEEecChhhHhc
Q 000984 551 SALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVE 609 (1198)
Q Consensus 551 s~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 609 (1198)
|+||+++++.+.+.++++. +++|+|+||||++.+..||+|++|++|++++.|+|+++++
T Consensus 483 s~LD~~~~~~i~~~l~~~~~~~~tvi~ith~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 542 (544)
T TIGR01842 483 SNLDEEGEQALANAIKALKARGITVVVITHRPSLLGCVDKILVLQDGRIARFGERDEVLA 542 (544)
T ss_pred cccCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHHHHhCCEEEEEECCEEEeeCCHHHHhh
Confidence 9999999999999999875 6799999999999999999999999999999999999865
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-70 Score=593.18 Aligned_cols=490 Identities=31% Similarity=0.441 Sum_probs=410.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCChhhhhccCCcchHHHHHHhHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhH
Q 000984 126 CWMITGERQATRIRGLYLKTILRQDVAFFDNETNTGEVVGRMSGDTVLIQDAMGEKVGKFLQLMAT-FLGGFLIAFIKGW 204 (1198)
Q Consensus 126 ~~~~~~~~~~~~lr~~~~~~ll~~~~~~f~~~~~~G~i~~r~s~D~~~i~~~~~~~~~~~~~~~~~-~i~~~i~~~~~~~ 204 (1198)
.|...++.+...+--..|.|+.++++.|.-++ .+|.+...+..-...|+..+...+...+..++- .+..++....++|
T Consensus 5 ~fs~v~q~a~r~la~~~F~h~~~Lsl~fHl~r-~TGglsR~ierGtkgI~~i~~~~l~~i~P~~~Ei~l~~vi~~~~~~~ 83 (497)
T COG5265 5 LFSPVGQIAVRVLAYVTFFHLHSLSLRFHLER-RTGGLSRAIERGTKGIETILRWILFNILPTLVEISLVAVILWRVYGW 83 (497)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHhcchhhhhhc-ccCceeeHhhcCcccHHHHHHHHHHHhhHHHHHHHHHHHHHHhhccc
Confidence 34445556666666677889999999988764 677666555555555555544444444444433 3445566677889
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHH
Q 000984 205 LLTLVMLSSIPLLAMSGGVMAIMISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYKSGVQEG 284 (1198)
Q Consensus 205 ~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~ 284 (1198)
+.+++.++++.++.++............+...+..++......++|-+..++|.|+.|+.+..+|.+.++...+...+..
T Consensus 84 ~f~~~t~vtv~lY~~ftv~~s~wr~~~rr~~n~aDs~a~~~aidsLlnfEtvk~F~ne~~e~~r~~~~~~~Y~~a~~k~~ 163 (497)
T COG5265 84 WFALTTLVTVILYLLFTVIVSDWRTDFRRLMNNADSDANAKAIDSLLNFETVKYFGNEEYEAVRYDHALETYEKAAIKVH 163 (497)
T ss_pred HHHHHHHHHHHHHHHhheeehhhhHHHHHhhhhhhhHHHHHHHHHHhhhhheeecCchhhhhhhcCchHHHHHHHHHHHH
Confidence 99988888887777776666666666666777788889999999999999999999999999999999998888877766
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC
Q 000984 285 LAAGIGLGMVMLIVFCSYALSVWYGGKLILEEGYNGGQVVNVMVAVLTGSMSLGEASPCLSAFGAGQAAAFKMFETINRK 364 (1198)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~ 364 (1198)
...++....-..+...........+...+..+.+|.|.++..-...++.+.++..+......+.++....+++++.+..+
T Consensus 164 ~Sl~~Ln~gQ~~I~~~~l~~~m~~s~~~v~~g~~TvgD~V~~Nall~qls~Plnflg~~Yrei~q~ltdme~mfdLl~~~ 243 (497)
T COG5265 164 VSLLVLNFGQTAIFSTGLRVMMTMSALGVEEGQLTVGDLVNVNALLFQLSIPLNFLGFSYREIRQALTDMEKMFDLLDVE 243 (497)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHhhcHHHHhhccCCchhHHhHHHHHhhhhhhhhhhHHHHHHHHHhhhhHHHHHHhhccc
Confidence 55444332223333334444455566667788999999887766677777787777777888888999999999998876
Q ss_pred CCCCccCCCCcccC-CCcccEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeE
Q 000984 365 PEIDAYDTKGKILD-DIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 443 (1198)
Q Consensus 365 ~~~~~~~~~~~~~~-~~~g~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i 443 (1198)
.+..+.. +.++.+ ...|.|.|+||+|.|. +.+++|+++||++++|++++|||++|+||||++++|.|+|++++|.|
T Consensus 244 ~~v~d~p-da~~L~~~~~g~v~F~~V~F~y~--~~r~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD~~sG~I 320 (497)
T COG5265 244 AEVSDAP-DAPPLWPVRLGAVAFINVSFAYD--PRRPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSGSI 320 (497)
T ss_pred hhhccCC-CCccccccccceEEEEEEEeecc--ccchhhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHhCCcCceE
Confidence 6554322 222333 3467899999999995 35789999999999999999999999999999999999999999999
Q ss_pred EECCeecCCcCHHHHhcceEEEcCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCC
Q 000984 444 LIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQL 523 (1198)
Q Consensus 444 ~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~l 523 (1198)
.+||.|+++...+.+|+.||.||||..||++|+..||.+|.|..++++++.+++.++++++|+.+|+|++|.|||+|-.|
T Consensus 321 ~id~qdir~vtq~slR~aIg~VPQDtvLFNDti~yni~ygr~~at~eev~aaa~~aqi~~fi~~lP~gy~t~Vgerglkl 400 (497)
T COG5265 321 TIDGQDIRDVTQQSLRRAIGIVPQDTVLFNDTIAYNIKYGRPDATAEEVGAAAEAAQIHDFIQSLPEGYDTGVGERGLKL 400 (497)
T ss_pred EEcchhHHHhHHHHHHHHhCcCcccceehhhhHHHHHhccCccccHHHHHHHHHHhhhhHHHHhCchhhhcccchheeec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHhHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhCCCeEEEEecCcchhhccCEEEEEeCCEEEEecC
Q 000984 524 SGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGT 603 (1198)
Q Consensus 524 SgGqkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~ 603 (1198)
|||||||+|+||+++++|+||+|||+|||||.+||+.||.++++..+++|.++|+||++++.+||.|+||++|+|+|.|+
T Consensus 401 Sggekqrvaiar~ilk~p~il~~deatsaldt~te~~iq~~l~~~~~~rttlviahrlsti~~adeiivl~~g~i~erg~ 480 (497)
T COG5265 401 SGGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQAALREVSAGRTTLVIAHRLSTIIDADEIIVLDNGRIVERGT 480 (497)
T ss_pred cCchHHHHHHHHHHhcCCCEEEEehhhhHhhhhHHHHHHHHHHHHhCCCeEEEEeehhhhccCCceEEEeeCCEEEecCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHhcCCCchhHHHHH
Q 000984 604 HSKLVEDPEGAYSQLIR 620 (1198)
Q Consensus 604 ~~~l~~~~~~~~~~~~~ 620 (1198)
|+||++. +|.|++||.
T Consensus 481 h~~ll~~-~g~ya~mw~ 496 (497)
T COG5265 481 HEELLAA-GGLYAEMWR 496 (497)
T ss_pred HHHHHHc-CChHHHHhc
Confidence 9999998 899999884
|
|
| >TIGR01194 cyc_pep_trnsptr cyclic peptide transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-66 Score=632.26 Aligned_cols=534 Identities=17% Similarity=0.138 Sum_probs=414.2
Q ss_pred hHHHHHHhhc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000984 45 PFYKLFTFAD-SADTALMIIGSIGAIGNGLCLPLMTLLFGDLINTFGDNQNNSETVDKVSKVAVKFVYLGIGSGIASFLQ 123 (1198)
Q Consensus 45 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 123 (1198)
..+.++++++ +.++ .+++++++.++.+++....+++++.+++... . .. . .. ...++++.++.+++.++.
T Consensus 4 ~~~~l~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~~~~i~~~i~~~~-~-~~-~--~~----~~~~~~~~~~~~~~~~~~ 73 (555)
T TIGR01194 4 AIGEILALLRSPFPA-ITAFSIALGLAGGLAIIALLASINNAIHEEN-F-LG-Q--GS----LFSFGGLCLLALLFRIGA 73 (555)
T ss_pred hHHHHHHHHhhccHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-c-cc-c--hH----HHHHHHHHHHHHHHHHHH
Confidence 3556666666 4333 3333344444444444455556665554311 0 00 0 01 111333445556777888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhccCCcchHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000984 124 VTCWMITGERQATRIRGLYLKTILRQDVAFFDNETNTGEVVGRMSGDTVLIQDAMGEKVGKFLQLMATFLGGFLIAFIKG 203 (1198)
Q Consensus 124 ~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~f~~~~~~G~i~~r~s~D~~~i~~~~~~~~~~~~~~~~~~i~~~i~~~~~~ 203 (1198)
.++....+.+...++|..+++++++.|+.+|++. ++|++++|+++|++.+++.+.. +..++..+..+++.++++++++
T Consensus 74 ~~~~~~~~~~~~~~lR~~l~~~l~~~~~~~~~~~-~~G~l~srl~~Dv~~i~~~~~~-~~~~~~~~~~~~~~~~~l~~~~ 151 (555)
T TIGR01194 74 DIFPAYAGMHIIANLRIALCEKILGAPIEEIDRR-GAHNLIPLLTHDIDQINAFLFI-FPPIAIALAIFFFCIAYLAYLS 151 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHhc-CcchhhHHHhhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHh
Confidence 8888888999999999999999999999999974 9999999999999999998864 6667777777888888999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcHH--HHHHHHHHHHHHHHHHHH
Q 000984 204 WLLTLVMLSSIPLLAMSGGVMAIMISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEK--QAMSNYKKFLVTAYKSGV 281 (1198)
Q Consensus 204 ~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~--~~~~~~~~~~~~~~~~~~ 281 (1198)
|.+++++++.+|+.+++..+..++.++...+.++..++..+.+.|.+.|++++|+|+.++ ...+++.+..++..+...
T Consensus 152 ~~L~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (555)
T TIGR01194 152 VPMFAITISAIIIGTAAQLLAFMGGFKFFHAARDEEDAFNEHTHAIAFGAKELKIHGIRRLSFAHGAIQESANNIADLHI 231 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHhcCHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 999998888888877777666666677777777788899999999999999999999854 446667766666655554
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000984 282 QEGLAAGIGLGMVMLIVFCSYALSVWYGGKLILEEGYNGGQVVNVMVAVLTGSMSLGEASPCLSAFGAGQAAAFKMFETI 361 (1198)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~ 361 (1198)
+..........+..++..+...++++++... +.++.|.+++++.+......++..+...+..+..+..+.+|+.+.+
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~t~g~l~a~~~~~~~l~~pi~~l~~~~~~~~~a~~s~~ri~~ll 308 (555)
T TIGR01194 232 IEILIFIAAENFGQLLFFLLIGCALFAAAMF---ASIDAAAISAFVLALLYIKGPLEMLVSALPILAQAQIACQRLADFG 308 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4443333322222233333333334444332 5788888888777777777788888888999999999999999987
Q ss_pred ccCCC--CCcc-CC-CCc---ccCCCcccEEEEeEEEEcCCCC--CCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHH
Q 000984 362 NRKPE--IDAY-DT-KGK---ILDDIRGDIELRDVYFSYPARP--NEQIFSGFSISISSGTTAALVGQSGSGKSTVISLI 432 (1198)
Q Consensus 362 ~~~~~--~~~~-~~-~~~---~~~~~~g~i~~~~v~~~y~~~~--~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l 432 (1198)
+.+.+ ...+ .. ... +.....+.|+++||+|+|++.+ .+++|+|+||++++||+++||||||||||||+++|
T Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~~~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll 388 (555)
T TIGR01194 309 ERFNEPEPELELSDADNVLLLAHDKSVDSIELKDVHMNPKAPEGSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLF 388 (555)
T ss_pred hhhccccccccccccccccccccCCCCceEEEEEEEEEeCCCCCCcCceeccceEEEcCCcEEEEECCCCCCHHHHHHHH
Confidence 53111 1100 00 000 1112246799999999997532 23699999999999999999999999999999999
Q ss_pred hccCCCCCCeEEECCeecCCcCHHHHhcceEEEcCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCc
Q 000984 433 ERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGI 512 (1198)
Q Consensus 433 ~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~ 512 (1198)
+|+++|++|+|.+||+|+++++.+++|++++||+|||++|++|+++|+ .++.++++++++++.++++++++.+|+|+
T Consensus 389 ~g~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~ti~~n~---~~~~~~~~~~~~~~~~~l~~~~~~lp~g~ 465 (555)
T TIGR01194 389 CGLYIPQEGEILLDGAAVSADSRDDYRDLFSAIFADFHLFDDLIGPDE---GEHASLDNAQQYLQRLEIADKVKIEDGGF 465 (555)
T ss_pred hCCCCCCCcEEEECCEECCCCCHHHHHhhCcEEccChhhhhhhhhccc---ccchhHHHHHHHHHHcCCchhhccccccc
Confidence 999999999999999999999999999999999999999999999995 35678899999999999999999999999
Q ss_pred cchhcCCCCCCChHHHHHHhHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHH-HH-hCCCeEEEEecCcchhhccCEE
Q 000984 513 DTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALD-RI-MVNRTTVIVAHRLSTVRNADMI 590 (1198)
Q Consensus 513 ~t~v~~~g~~lSgGqkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~-~~-~~~~t~i~itH~~~~~~~~d~i 590 (1198)
+|. .+|||||||||+||||++++|+|||||||||+||+++++.+++.+. .. .+++|+|+||||++++..||+|
T Consensus 466 ~t~-----~~LSgGq~qRlalaRall~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tiiiisH~~~~~~~~d~i 540 (555)
T TIGR01194 466 STT-----TALSTGQQKRLALICAWLEDRPILLFDEWAADQDPAFKRFFYEELLPDLKRQGKTIIIISHDDQYFELADQI 540 (555)
T ss_pred CCc-----ccCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHhCCEE
Confidence 994 7899999999999999999999999999999999999999988764 33 3689999999999999999999
Q ss_pred EEEeCCEEEEe
Q 000984 591 AVIHRGKIVEK 601 (1198)
Q Consensus 591 ~~l~~G~i~~~ 601 (1198)
++|++|+++|.
T Consensus 541 ~~l~~G~i~~~ 551 (555)
T TIGR01194 541 IKLAAGCIVKD 551 (555)
T ss_pred EEEECCEEEEe
Confidence 99999999864
|
This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake. |
| >COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-65 Score=566.01 Aligned_cols=519 Identities=22% Similarity=0.303 Sum_probs=426.9
Q ss_pred HHHHHHHHHHhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhc
Q 000984 77 LMTLLFGDLINTFGDNQNNSETVDKVSKVAVKFVYLGIGSGIASFLQVTCWMITGERQATRIRGLYLKTILRQDVAFFDN 156 (1198)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~f~~ 156 (1198)
..+.++-.+-|......+. ..+....+..+++.++..++-+++.......+.++-.++...++.+.++.+...-
T Consensus 41 ~~~lyMLQVyDRVL~S~s~----~TLv~Ltvlal~ly~~~glLd~iR~~~l~Rig~~lD~~L~~~v~~a~~~~~l~~~-- 114 (580)
T COG4618 41 TGPLYMLQVYDRVLPSRSV----PTLVMLTVLALGLYAFQGLLDAIRSRVLVRIGERLDRQLNGPVFAASFSAPLLRR-- 114 (580)
T ss_pred hhhHHHHHHHhhhccCCCc----chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHhhHHhhc--
Confidence 3444555666765543221 2222223333444555667788888888888888888888888888887776532
Q ss_pred cCCcchHHHHHHhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000984 157 ETNTGEVVGRMSGDTVLIQDAMGE-KVGKFLQLMATFLGGFLIAFIKGWLLTLVMLSSIPLLAMSGGVMAIMISKMSSRG 235 (1198)
Q Consensus 157 ~~~~G~i~~r~s~D~~~i~~~~~~-~~~~~~~~~~~~i~~~i~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (1198)
..|+=..-+ +|.+.++.++.. ....++...|+ ...+.++|.+++++.++.++...+++.+.++-.+..++-.++.
T Consensus 115 --~~g~~~Q~L-rDL~qvR~Fltg~g~~A~fDaPW~-P~yl~v~fl~Hp~lG~~a~~ga~iLv~la~ln~~~t~~p~~eA 190 (580)
T COG4618 115 --GSGDGLQPL-RDLDQVRQFLTGTGLTAFFDAPWM-PLYLAVIFLFHPWLGLIALAGAIILVVLALLNERATRKPLKEA 190 (580)
T ss_pred --CCCccccch-hhHHHHHHHHcCCCcchhcCCchH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHH
Confidence 333222222 699999999875 45555555565 4456788888988888888777777777777777777777777
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000984 236 QGAYAKAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYKSGVQEGLAAGIGLGMVMLIVFCSYALSVWYGGKLILE 315 (1198)
Q Consensus 236 ~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~ 315 (1198)
.+...+++.....+..|..+|+++|+.....++|.+.............-..+....+.-.+-......++..|++++..
T Consensus 191 ~~~~~~~~~~~~a~~RNAEvi~AMGM~~~l~~rW~~~~~~~L~~~~~asd~~~~~~~~Sr~~Rm~lQs~iLg~GA~Lvi~ 270 (580)
T COG4618 191 SEASIRANQLADATLRNAEVIEAMGMLGNLAKRWGRFNAAYLSAQERASDRNGAFGALSRALRMALQSAVLGLGAWLVIK 270 (580)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcceeeEEc
Confidence 88888899999999999999999999999999999888887777666666666666666666667777778889999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCccCCCCcccCCCcccEEEEeEEEEcCC
Q 000984 316 EGYNGGQVVNVMVAVLTGSMSLGEASPCLSAFGAGQAAAFKMFETINRKPEIDAYDTKGKILDDIRGDIELRDVYFSYPA 395 (1198)
Q Consensus 316 ~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~v~~~y~~ 395 (1198)
+.+|+|.++...+..-....++......+.++..++.+..|+.+.+...|+..+ ..+.+..+|.+.++++++.-|.
T Consensus 271 ge~t~G~mIA~SIl~gRaLaPid~aI~~Wkq~~~Ar~s~~Rl~~lL~~~p~~~~----~m~LP~P~g~L~Ve~l~~~PPg 346 (580)
T COG4618 271 GEITPGMMIAGSILSGRALAPIDLAIANWKQFVAARQSYKRLNELLAELPAAAE----RMPLPAPQGALSVERLTAAPPG 346 (580)
T ss_pred CcCCcchhhHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHhCccccC----CCCCCCCCceeeEeeeeecCCC
Confidence 999999887643333223346667777788888999999999999987664321 2334445789999999998665
Q ss_pred CCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcceEEEcCCCCCCccc
Q 000984 396 RPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGS 475 (1198)
Q Consensus 396 ~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~t 475 (1198)
. ++++|+|+||++++||-++|+||||||||||.++|.|..+|.+|.|++||-|+++++.+.+-++|||.|||-.||.||
T Consensus 347 ~-~~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~p~~G~VRLDga~l~qWd~e~lG~hiGYLPQdVeLF~GT 425 (580)
T COG4618 347 Q-KKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQWDREQLGRHIGYLPQDVELFDGT 425 (580)
T ss_pred C-CCcceecceeEecCCceEEEECCCCccHHHHHHHHHcccccCCCcEEecchhhhcCCHHHhccccCcCcccceecCCc
Confidence 4 579999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhhccCCCEEEEeCCCCCCCH
Q 000984 476 IKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDA 555 (1198)
Q Consensus 476 i~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal~~~~~illlDe~ts~lD~ 555 (1198)
|+|||+-..++.+++.+.++++.++.||.|.++|+||||.||++|..|||||||||+||||+|.+|.+++||||-|+||.
T Consensus 426 IaeNIaRf~~~~d~~kIieAA~lAgvHelIl~lP~GYdT~iG~~G~~LSgGQRQRIaLARAlYG~P~lvVLDEPNsNLD~ 505 (580)
T COG4618 426 IAENIARFGEEADPEKVIEAARLAGVHELILRLPQGYDTRIGEGGATLSGGQRQRIALARALYGDPFLVVLDEPNSNLDS 505 (580)
T ss_pred HHHHHHhccccCCHHHHHHHHHHcChHHHHHhCcCCccCccCCCCCCCCchHHHHHHHHHHHcCCCcEEEecCCCCCcch
Confidence 99999866668899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhHHHHHHHHHHHh-CCCeEEEEecCcchhhccCEEEEEeCCEEEEecChhhHhcC
Q 000984 556 ESEKVVQEALDRIM-VNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVED 610 (1198)
Q Consensus 556 ~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~ 610 (1198)
+.|..+.++|...+ +++|+|+||||++.+..+|+|++|++|++..+|+.+|.+++
T Consensus 506 ~GE~AL~~Ai~~~k~rG~~vvviaHRPs~L~~~Dkilvl~~G~~~~FG~r~eVLa~ 561 (580)
T COG4618 506 EGEAALAAAILAAKARGGTVVVIAHRPSALASVDKILVLQDGRIAAFGPREEVLAK 561 (580)
T ss_pred hHHHHHHHHHHHHHHcCCEEEEEecCHHHHhhcceeeeecCChHHhcCCHHHHHHH
Confidence 99999999998775 57999999999999999999999999999999999998765
|
|
| >COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-65 Score=619.98 Aligned_cols=462 Identities=26% Similarity=0.366 Sum_probs=421.0
Q ss_pred hHhhhhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000984 707 TRRLAYLNKPEIPVILAGTIAAMANGVILPIYGLLISSVIETFFKPPHELKKDSRFWALIYLALGAGSFLLSPAQSYFFA 786 (1198)
Q Consensus 707 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 (1198)
..+++....+++..+.-.++.+++..++..+.|++...++|....... ........+.++++++...++.+++.+++.
T Consensus 142 ~~~f~~~~~~~~~~l~~v~~~sl~l~i~~l~~p~~~q~viD~Vl~~~~--~~tL~vl~ig~~~~~l~~~~l~~lr~~~~~ 219 (709)
T COG2274 142 LSWFIPLLFKYRRLLFEVLLASLLLQLLALATPLFSQIVIDKVLPDAS--RSTLTVLAIGLLLAALFEALLRLLRTYLIA 219 (709)
T ss_pred hHhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCc--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555667777666777777777777788888888887764321 222334455566677888899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhCcccccccCCCChhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q 000984 787 VAGNKLIQRIRSMCFEKVIHMEVSWFDEPEHSSGAIGARLSADAASVRALVGDALARIVQNISTAAAGLIIAFTASWQLA 866 (1198)
Q Consensus 787 ~~~~~~~~~Lr~~l~~~ll~~p~~fFd~~~~~~G~i~~r~s~D~~~i~~~l~~~l~~~i~~~~~~i~~li~~~~~~~~l~ 866 (1198)
..+.++..++-.++|+|++++|++||. ++++|++++|+. |++.|++++...+...+..+.+.++.+++|++++|+|+
T Consensus 220 ~~~~rld~~l~~~~~~hll~Lpl~~f~--~r~~Ge~~sR~~-el~~Ir~flt~~~l~~iiD~~~~~i~l~vm~~ys~~L~ 296 (709)
T COG2274 220 HLGKRLDLELSGRFFRHLLRLPLSYFE--KRSVGEIISRVR-ELEQIREFLTGSILTLIIDLLFALIFLAVMFLYSWKLT 296 (709)
T ss_pred HHHHHHhHHHHHHHHHHHHcCcHHHcc--CCChhhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999 589999999998 99999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhchhHHHHHhcchHHHHHHHHHHhhhHHHHhHHHHHHH
Q 000984 867 LIILVMLPLIGVSGYTQMKFMKGFSADAKMKYEEASQVANDAVGSIRTVASFCAEEKVMQLYKKKCEAPMKTGIRQGMVS 946 (1198)
Q Consensus 867 l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 946 (1198)
+++++.+|++++...+..+++++..++.....++.++.+.|++.|++|||+.+.|.++..+|++..+++.+..++.....
T Consensus 297 li~l~~~~l~~l~~~~~~~~l~~~~~~~~~~~a~~~s~lvE~i~gi~tvK~~~~e~~~~~~w~~~~~~~~~~~~~~~~~~ 376 (709)
T COG2274 297 LIVLAAIPLNVLITLIFQPLLRRKTRKLIEESAEQQSFLVETIKGIETVKALAAEPRFRSQWDNRLAKQVNIGFKTEKLA 376 (709)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhcCCCCC
Q 000984 947 GGGFGASFFLLFAFYAASFYAGARLVEDGKATFSDVFKVFFSLTMTAIGISQSSSFSSDSNKAKSAAASIFAIIDRESKI 1026 (1198)
Q Consensus 947 ~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~~t~g~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~ 1026 (1198)
.....+..++..+..++++|+|++++.+|.+|+|.+++|.++...+..|+.++.++..++++...+.+|+.++++.++|.
T Consensus 377 ~~~~~~~~~l~~l~~v~iL~~G~~lVl~~~lTlG~LiAf~~l~~~f~~pi~~L~~~~~~~q~~~~~~~rL~dil~~~~E~ 456 (709)
T COG2274 377 LILNTIKSLLQQLSSVLILWFGAILVLEGELTLGQLVAFNMLAGYFISPITRLSQLWTDFQQAKVALERLGDILDTPPEQ 456 (709)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998875
Q ss_pred CCCCCCCCcccCCcccEEEeeeeEECCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECC
Q 000984 1027 DPSDESGTILEDVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDG 1106 (1198)
Q Consensus 1027 ~~~~~~~~~~~~~~G~I~f~nVsf~Y~~~~~~~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG 1106 (1198)
+.+.. ....+...|+|+|+||+|+|+.+ ++++|+|+||+|+|||+|||||+||||||||+++|.|+|+|++|+|++||
T Consensus 457 ~~~~~-~~~~~~~~g~I~~~nvsf~y~~~-~~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~dg 534 (709)
T COG2274 457 EGDKT-LIHLPKLQGEIEFENVSFRYGPD-DPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDG 534 (709)
T ss_pred ccccc-cccccccCceEEEEEEEEEeCCC-CcchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECC
Confidence 43321 12345578999999999999865 34799999999999999999999999999999999999999999999999
Q ss_pred cccCCCChHHHHhhcceeccccccccccHHHHHhcCCCCCCCHHHHHHHHHHcchHHHHHhcccccccee
Q 000984 1107 VEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQVRTSRL 1176 (1198)
Q Consensus 1107 ~dI~~i~l~~LR~~IsiV~Qdp~LF~gTIreNI~~g~~~~~tdeei~~Al~~A~l~dfI~~LP~g~dt~v 1176 (1198)
+|++++++++||++|++||||++||+|||||||++|+ +++++||+++||+.|++||||++||.||||+|
T Consensus 535 ~dl~~i~~~~lR~~ig~V~Q~~~Lf~gSI~eNi~l~~-p~~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v 603 (709)
T COG2274 535 VDLNDIDLASLRRQVGYVLQDPFLFSGSIRENIALGN-PEATDEEIIEAAQLAGAHEFIENLPMGYDTPV 603 (709)
T ss_pred EeHHhcCHHHHHhheeEEcccchhhcCcHHHHHhcCC-CCCCHHHHHHHHHHhCcHHHHHhccccccccc
Confidence 9999999999999999999999999999999999996 58999999999999999999999999999998
|
|
| >PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-61 Score=592.82 Aligned_cols=464 Identities=19% Similarity=0.200 Sum_probs=358.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhccCCcchHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000984 117 GIASFLQVTCWMITGERQATRIRGLYLKTILRQDVAFFDNETNTGEVVGRMSGDTVLIQDAMGEKVGKFLQLMATFLGGF 196 (1198)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~f~~~~~~G~i~~r~s~D~~~i~~~~~~~~~~~~~~~~~~i~~~ 196 (1198)
.++.++..++..+.+.+...++|..+++++++.|+++|++. ++|++++|+++|++.+...+. .+..++..++.+++.+
T Consensus 62 ~~~~~~~~~~~~~~~~~~~~~lR~~l~~~ll~~~~~~~~~~-~~g~~lsrl~~dv~~i~~~~~-~l~~~~~~~~~~i~~~ 139 (547)
T PRK10522 62 MAVTLGSQLALTTLGHHFVYRLRSEFIKRILDTHVERIEQL-GSASLLASLTSDVRNITIAFV-RLPELVQGIILTLGSA 139 (547)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhcc-CccchHHHHHhhHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 44566777777888899999999999999999999999974 999999999999999998665 4566777778888888
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcH---HHHHHHHHHHH
Q 000984 197 LIAFIKGWLLTLVMLSSIPLLAMSGGVMAIMISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGE---KQAMSNYKKFL 273 (1198)
Q Consensus 197 i~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e---~~~~~~~~~~~ 273 (1198)
+++++++|.+++++++++|+.+++..++.+..++..++.++..++..+.+.|.++|+++++ ++.+ +.+.+++.+..
T Consensus 140 ~~l~~~~~~l~li~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~i~-~~~~~~~~~~~~~~~~~~ 218 (547)
T PRK10522 140 AYLAWLSPKMLLVTAIWMAVTIWGGFVLVARVYKHMATLRETEDKLYNDYQTVLEGRKELT-LNRERAEYVFENEYEPDA 218 (547)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhh-ccHHHHHHHHHHHHhHHH
Confidence 8999999999999888888888888888888888888888889999999999999999996 4433 34566776666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000984 274 VTAYKSGVQEGLAAGIGLGMVMLIVFCSYALSVWYGGKLILEEGYNGGQVVNVMVAVLTGSMSLGEASPCLSAFGAGQAA 353 (1198)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~ 353 (1198)
++..+...+..........+..++......++++.++... ..+.+.+..+....+....++..+...+..+..+..+
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~a 295 (547)
T PRK10522 219 QEYRHHIIRADTFHLSAVNWSNIMMLGAIGLVFYMANSLG---WADTNVAATYSLTLLFLRTPLLSAVGALPTLLSAQVA 295 (547)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---cCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6555444443333222222211122222222333332211 1122222222222233345777777788888899999
Q ss_pred HHHHHHHHccCCCCCccCCCCcccCCCcccEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHh
Q 000984 354 AFKMFETINRKPEIDAYDTKGKILDDIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIE 433 (1198)
Q Consensus 354 ~~r~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~ 433 (1198)
.+|+.+....+++.+... .... +..+.|+++||+|+|++ ++++|+|+||+|++||+++|+||||||||||+++|+
T Consensus 296 ~~ri~~l~~~~~~~~~~~--~~~~-~~~~~i~~~~v~f~y~~--~~~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~ 370 (547)
T PRK10522 296 FNKLNKLALAPYKAEFPR--PQAF-PDWQTLELRNVTFAYQD--NGFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLT 370 (547)
T ss_pred HHHHHHHhcccccccccc--cccc-CcCceEEEEEEEEEeCC--CCeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 999998865433211111 1111 11357999999999974 246999999999999999999999999999999999
Q ss_pred ccCCCCCCeEEECCeecCCcCHHHHhcceEEEcCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCcc
Q 000984 434 RFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGID 513 (1198)
Q Consensus 434 g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~ 513 (1198)
|+++|++|+|.+||+|+++++.+++|++++||+|||++|++|+++| + +..++++++++++.+++.+++. .|+|.
T Consensus 371 g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~n---~-~~~~~~~~~~~~~~~~l~~~~~-~~~~~- 444 (547)
T PRK10522 371 GLYQPQSGEILLDGKPVTAEQPEDYRKLFSAVFTDFHLFDQLLGPE---G-KPANPALVEKWLERLKMAHKLE-LEDGR- 444 (547)
T ss_pred CCCCCCCeEEEECCEECCCCCHHHHhhheEEEecChhHHHHhhccc---c-CchHHHHHHHHHHHcCCchhhh-ccccC-
Confidence 9999999999999999999999999999999999999999999999 2 3456677776666666554443 23221
Q ss_pred chhcCCCCCCChHHHHHHhHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh--CCCeEEEEecCcchhhccCEEE
Q 000984 514 TLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIM--VNRTTVIVAHRLSTVRNADMIA 591 (1198)
Q Consensus 514 t~v~~~g~~lSgGqkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~--~~~t~i~itH~~~~~~~~d~i~ 591 (1198)
.+|.+||||||||++||||++++|++||||||||+||+++++.+.+.+.+.. +++|+|+||||++.+..||+|+
T Consensus 445 ----~~G~~LSgGq~qRl~lARal~~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tvi~itH~~~~~~~~d~i~ 520 (547)
T PRK10522 445 ----ISNLKLSKGQKKRLALLLALAEERDILLLDEWAADQDPHFRREFYQVLLPLLQEMGKTIFAISHDDHYFIHADRLL 520 (547)
T ss_pred ----CCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEEechHHHHhCCEEE
Confidence 1478999999999999999999999999999999999999999999987654 4799999999999999999999
Q ss_pred EEeCCEEEEe
Q 000984 592 VIHRGKIVEK 601 (1198)
Q Consensus 592 ~l~~G~i~~~ 601 (1198)
+|++|+++|.
T Consensus 521 ~l~~G~i~e~ 530 (547)
T PRK10522 521 EMRNGQLSEL 530 (547)
T ss_pred EEECCEEEEe
Confidence 9999999976
|
|
| >TIGR02868 CydC thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-61 Score=594.44 Aligned_cols=458 Identities=20% Similarity=0.237 Sum_probs=392.4
Q ss_pred hhhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhhhhHHH--HHHHHHHHHHHHHHHHHHHHHHHH
Q 000984 710 LAYLNKPEIPVILAGTIAAMANGVILPIYGLLISSVIETFFKPPHELKKDSRFW--ALIYLALGAGSFLLSPAQSYFFAV 787 (1198)
Q Consensus 710 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 787 (1198)
++.+.+++++.++..+++.++..++....+++++.++|....... ...++ ...++++.++..++.++..++...
T Consensus 4 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (529)
T TIGR02868 4 ILPLLQPRTRRLVVAILLGALALGSAVALLGVSAWLISRAAEMPP----VLYLSVAAVAVRAFGIGRAVFRYLERLVGHD 79 (529)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcch----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556667777777777777777778888888888886543211 11111 111223455667788889999999
Q ss_pred HHHHHHHHHHHHHHHHHHhCcccccccCCCChhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 000984 788 AGNKLIQRIRSMCFEKVIHMEVSWFDEPEHSSGAIGARLSADAASVRALVGDALARIVQNISTAAAGLIIAFTASWQLAL 867 (1198)
Q Consensus 788 ~~~~~~~~Lr~~l~~~ll~~p~~fFd~~~~~~G~i~~r~s~D~~~i~~~l~~~l~~~i~~~~~~i~~li~~~~~~~~l~l 867 (1198)
.+.++..++|.++|+|++++|.+||+ ++++|++++|+++|++.+++.+...+..++..++.+++.++++++++|.+++
T Consensus 80 ~~~~~~~~lr~~~~~~ll~~~~~~~~--~~~~g~~~~~l~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l 157 (529)
T TIGR02868 80 AALRSLGRLRVRVYDRLARLALAGRR--RFQTGDLLGRLGADVDALQDLYVRVIVPLVVALVVGSAAVAAIALLSVPAAL 157 (529)
T ss_pred HHHHHHHHHHHHHHHHhhccCccccc--cCChhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 99999999999999999999999999 5889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHH-HHHHhhhHHHHHHHHHHHHHHHHHHhchhHHHHHhcchHHHHHHHHHHhhhHHHHhHHHHHHH
Q 000984 868 IILVMLPLIGVSGYTQ-MKFMKGFSADAKMKYEEASQVANDAVGSIRTVASFCAEEKVMQLYKKKCEAPMKTGIRQGMVS 946 (1198)
Q Consensus 868 ~~l~~~pl~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 946 (1198)
++++.+|++.++...+ .+..++..++.++..++..+.+.|.++|+++||+|++|+.+.++|++..++..+...+.....
T Consensus 158 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (529)
T TIGR02868 158 VLAAGLLLAGFVAPLVSLRAARAAEVALARLRSQLYQQLTDALDGAADLVAYGALDPALAQVEAADRELLAAERRAARAT 237 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhccHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9998888876665444 444455667777888899999999999999999999999999999999999999998888888
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhcCCCCC
Q 000984 947 GGGFGASFFLLFAFYAASFYAGARLVEDGKATFSDVFKVFFSLTMTAIGISQSSSFSSDSNKAKSAAASIFAIIDRESKI 1026 (1198)
Q Consensus 947 ~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~~t~g~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~ 1026 (1198)
+...++..++..+..++++++|++++..|.+++|.++++..+...+..|+..+......++++..+.+|+.++++.+++.
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~t~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~ 317 (529)
T TIGR02868 238 GLGAAAQLLAAGLAVLGALWAGGPAVADGTLAPATLAVLVLLPLAAFEAFAPLPAAAQALTRVRAAAERIEEVTGAKGPR 317 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCc
Confidence 88788888888888888889999999999999999999999999999999999999999999999999999999876643
Q ss_pred CCCCCC-CCcccCCcccEEEeeeeEECCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEEC
Q 000984 1027 DPSDES-GTILEDVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLD 1105 (1198)
Q Consensus 1027 ~~~~~~-~~~~~~~~G~I~f~nVsf~Y~~~~~~~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~ID 1105 (1198)
+..... ....++..++|+|+||+|+|+++ +++|+|+||+|+|||++|||||||||||||+++|+|+|+|++|+|++|
T Consensus 318 ~~~~~~~~~~~~~~~~~I~~~~vsf~Y~~~--~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~i~ 395 (529)
T TIGR02868 318 PEGVVPAAGALGLGKPTLELRDLSFGYPGS--PPVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDPLQGEVTLD 395 (529)
T ss_pred CCCCCCCCcccCCCCceEEEEEEEEecCCC--CceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEEC
Confidence 221111 11112234679999999999753 369999999999999999999999999999999999999999999999
Q ss_pred CcccCCCChHHHHhhcceeccccccccccHHHHHhcCCCCCCCHHHHHHHHHHcchHHHHHhccccccceee
Q 000984 1106 GVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQVRTSRLL 1177 (1198)
Q Consensus 1106 G~dI~~i~l~~LR~~IsiV~Qdp~LF~gTIreNI~~g~~~~~tdeei~~Al~~A~l~dfI~~LP~g~dt~v~ 1177 (1198)
|+|++++ .+++|++|++|||||+||+|||||||+||+ ++++|||+++|++.|+++|||++||+||||.|-
T Consensus 396 g~~i~~~-~~~lr~~i~~V~Q~~~lF~~TI~eNI~~g~-~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ig 465 (529)
T TIGR02868 396 GVSVSSL-QDELRRRISVFAQDAHLFDTTVRDNLRLGR-PDATDEELWAALERVGLADWLRSLPDGLDTVLG 465 (529)
T ss_pred CEEhhhH-HHHHHhheEEEccCcccccccHHHHHhccC-CCCCHHHHHHHHHHcCCHHHHHhCcccccchhc
Confidence 9999999 999999999999999999999999999995 479999999999999999999999999999863
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. |
| >TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-60 Score=601.42 Aligned_cols=465 Identities=28% Similarity=0.388 Sum_probs=411.2
Q ss_pred hhHhhhhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000984 706 PTRRLAYLNKPEIPVILAGTIAAMANGVILPIYGLLISSVIETFFKPPHELKKDSRFWALIYLALGAGSFLLSPAQSYFF 785 (1198)
Q Consensus 706 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 (1198)
..++++.+.++.++.+...+++.++.+++....+++++.++|....... ........++++++.++..++.+++.+++
T Consensus 148 ~~~~l~~~~~~~~~~l~~~~~~~~~~~l~~~~~p~~~~~iid~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 225 (711)
T TIGR00958 148 LLFRLLGLSGRDWPWLISAFVFLTLSSLGEMFIPFYTGRVIDTLGGDKG--PPALASAIFFMCLLSIASSVSAGLRGGSF 225 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556677777888888888888888888888899999999987753221 11122233344455666778888899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCcccccccCCCChhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 000984 786 AVAGNKLIQRIRSMCFEKVIHMEVSWFDEPEHSSGAIGARLSADAASVRALVGDALARIVQNISTAAAGLIIAFTASWQL 865 (1198)
Q Consensus 786 ~~~~~~~~~~Lr~~l~~~ll~~p~~fFd~~~~~~G~i~~r~s~D~~~i~~~l~~~l~~~i~~~~~~i~~li~~~~~~~~l 865 (1198)
.+.+.++..++|.++|++++++|++||+ ++++|++++|+++|++.+++.+...+..++.+++.+++.+++++.++|++
T Consensus 226 ~~~~~~~~~~lr~~l~~~ll~~~~~~f~--~~~~G~i~srl~~Di~~i~~~~~~~~~~~l~~~~~~i~~~~~l~~~s~~l 303 (711)
T TIGR00958 226 NYTMARINLRIREDLFRSLLRQDLGFFD--ENKTGELTSRLSSDTQTMSRSLSLNVNVLLRNLVMLLGLLGFMLWLSPRL 303 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCHHHHc--CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 9999999999999999999999999999 58899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhchhHHHHHhcchHHHHHHHHHHhhhHHHHhHHHHHH
Q 000984 866 ALIILVMLPLIGVSGYTQMKFMKGFSADAKMKYEEASQVANDAVGSIRTVASFCAEEKVMQLYKKKCEAPMKTGIRQGMV 945 (1198)
Q Consensus 866 ~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~~ 945 (1198)
++++++.+|+.+++..++.++.++..++.++..++.++.+.|+++|+++||+|+.|+++.++|.+..++..+...+....
T Consensus 304 ~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 383 (711)
T TIGR00958 304 TMVTLINLPLVFLAEKVFGKRYQLLSEELQEAVAKANQVAEEALSGMRTVRSFAAEEGEASRFKEALEETLQLNKRKALA 383 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999888887777
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhcCCCC
Q 000984 946 SGGGFGASFFLLFAFYAASFYAGARLVEDGKATFSDVFKVFFSLTMTAIGISQSSSFSSDSNKAKSAAASIFAIIDRESK 1025 (1198)
Q Consensus 946 ~~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~~t~g~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~~~~~ 1025 (1198)
.+....+...+..+..++++++|++++..|.+++|+++++..+...+..|+..+......++++..+.+|++++++.+++
T Consensus 384 ~~~~~~~~~~~~~~~~~~il~~g~~lv~~g~it~G~lva~~~~~~~l~~~l~~l~~~~~~~~~~~~a~~ri~~~l~~~~~ 463 (711)
T TIGR00958 384 YAGYLWTTSVLGMLIQVLVLYYGGQLVLTGKVSSGNLVSFLLYQEQLGEAVRVLSYVYSGMMQAVGASEKVFEYLDRKPN 463 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 66666666666667777888999999999999999999999999999999999999999999999999999999988765
Q ss_pred CCCCCCCCCcccCCcccEEEeeeeEECCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEEC
Q 000984 1026 IDPSDESGTILEDVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLD 1105 (1198)
Q Consensus 1026 ~~~~~~~~~~~~~~~G~I~f~nVsf~Y~~~~~~~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~ID 1105 (1198)
.+... ...+.+..|+|+|+||+|+||++++.++|+|+||+|+|||++|||||||||||||+++|+|+|+|++|+|++|
T Consensus 464 ~~~~~--~~~~~~~~~~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~id 541 (711)
T TIGR00958 464 IPLTG--TLAPLNLEGLIEFQDVSFSYPNRPDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLD 541 (711)
T ss_pred CCCCC--CCCCCCCCCeEEEEEEEEECCCCCCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEEC
Confidence 43221 1112234678999999999986655689999999999999999999999999999999999999999999999
Q ss_pred CcccCCCChHHHHhhcceeccccccccccHHHHHhcCCCCCCCHHHHHHHHHHcchHHHHHhccccccceee
Q 000984 1106 GVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQVRTSRLL 1177 (1198)
Q Consensus 1106 G~dI~~i~l~~LR~~IsiV~Qdp~LF~gTIreNI~~g~~~~~tdeei~~Al~~A~l~dfI~~LP~g~dt~v~ 1177 (1198)
|+|+++++.+++|++|++|||||+||+|||||||+||. ++++|||+++|++.|++++||++||+||||.+-
T Consensus 542 g~~i~~~~~~~lr~~i~~v~Q~~~lF~gTIreNI~~g~-~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ig 612 (711)
T TIGR00958 542 GVPLVQYDHHYLHRQVALVGQEPVLFSGSVRENIAYGL-TDTPDEEIMAAAKAANAHDFIMEFPNGYDTEVG 612 (711)
T ss_pred CEEHHhcCHHHHHhhceEEecCccccccCHHHHHhcCC-CCCCHHHHHHHHHHcCCHHHHHhCCCccCCccc
Confidence 99999999999999999999999999999999999995 478999999999999999999999999999863
|
|
| >COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-60 Score=583.49 Aligned_cols=448 Identities=30% Similarity=0.473 Sum_probs=399.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000984 717 EIPVILAGTIAAMANGVILPIYGLLISSVIETFFKPPHELKKDSRFWALIYLALGAGSFLLSPAQSYFFAVAGNKLIQRI 796 (1198)
Q Consensus 717 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L 796 (1198)
++ .+..+.++.++...+....++++..+++..... ......+...++++.++..++.++..++..+.+.+...++
T Consensus 13 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~----~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~l 87 (567)
T COG1132 13 YK-LLLLAILLLLLSALLSLLLPLLIGRIIDALLAD----LGELLELLLLLLLLALLGGVLRALQSYLGSRLGQKIVADL 87 (567)
T ss_pred HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55 666777777777777788888888888876511 1122233444555555777888888888888889999999
Q ss_pred HHHHHHHHHhCcccccccCCCChhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 000984 797 RSMCFEKVIHMEVSWFDEPEHSSGAIGARLSADAASVRALVGDALARIVQNISTAAAGLIIAFTASWQLALIILVMLPLI 876 (1198)
Q Consensus 797 r~~l~~~ll~~p~~fFd~~~~~~G~i~~r~s~D~~~i~~~l~~~l~~~i~~~~~~i~~li~~~~~~~~l~l~~l~~~pl~ 876 (1198)
|.+++++++++|++||+ ++++|++++|+++|++.++..+.+....+...++.+++.+++++..+|.+++++++.+|++
T Consensus 88 r~~~~~~l~~~~~~~~~--~~~~g~l~~~~t~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~ 165 (567)
T COG1132 88 RRDLFEKLLRLPLSFFD--KAKSGDLISRLTNDVEAVSNLVSTVLVLVFTSILLLIGSLVLLFSLSWRLALILLLILPLL 165 (567)
T ss_pred HHHHHHHHHhCCHHHhC--cCCcchHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 99999999999999999 5889999999999999999999999666776888999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhchhHHHHHhcchHHHHHHHHHHhhhHHHHhHHHHHHHhhHHHHHHHH
Q 000984 877 GVSGYTQMKFMKGFSADAKMKYEEASQVANDAVGSIRTVASFCAEEKVMQLYKKKCEAPMKTGIRQGMVSGGGFGASFFL 956 (1198)
Q Consensus 877 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 956 (1198)
.+...+..++.++..+..++..++.++.+.|+++|+++||+|+.++.+.++|.+..+...+...+.....+...++...+
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (567)
T COG1132 166 ALVLSLLARKSRKLSRRVREALGELNARLLESLSGIRVIKAFGAEDRELKRFEEANEELRRANLRASRLEALLAPLMLLL 245 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999888888889999999999999999999999999999999999999999999999998888888888888888889
Q ss_pred HHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCcc
Q 000984 957 LFAFYAASFYAGARLVEDGKATFSDVFKVFFSLTMTAIGISQSSSFSSDSNKAKSAAASIFAIIDRESKIDPSDESGTIL 1036 (1198)
Q Consensus 957 ~~~~~~~~~~~g~~l~~~g~~t~g~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~~ 1036 (1198)
..+...+++++|.+++..+.+++|.+++++.+...+..|+..+......++.+..+.+|++++++.+++..+.+.. .
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~---~ 322 (567)
T COG1132 246 SSLGTVLVLALGGFLVLSGSLTVGALAAFILYLLRLLTPILQLGEVVSLLQRASAAAERLFELLDEEPEVEDPPDP---L 322 (567)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCCCCC---C
Confidence 9999999999999999999999999999999999999999999999999999999999999999987654332211 2
Q ss_pred cCCcccEEEeeeeEECCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHH
Q 000984 1037 EDVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKW 1116 (1198)
Q Consensus 1037 ~~~~G~I~f~nVsf~Y~~~~~~~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~~i~l~~ 1116 (1198)
....|+|+|+||+|+|++ ++++|+|+||+|+|||++|||||||||||||+++|+|||||++|+|+|||+||+++++++
T Consensus 323 ~~~~~~I~f~~vsf~y~~--~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~idg~dI~~i~~~~ 400 (567)
T COG1132 323 KDTIGSIEFENVSFSYPG--KKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLDS 400 (567)
T ss_pred CCCCCeEEEEEEEEEcCC--CCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCEehhhcCHHH
Confidence 334578999999999974 347999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcceeccccccccccHHHHHhcCCCCCCCHHHHHHHHHHcchHHHHHhccccccceee
Q 000984 1117 LRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQVRTSRLL 1177 (1198)
Q Consensus 1117 LR~~IsiV~Qdp~LF~gTIreNI~~g~~~~~tdeei~~Al~~A~l~dfI~~LP~g~dt~v~ 1177 (1198)
||++|++|||||+||+|||+|||+||++ ++||||+++|||.|++||||++||+||||.|-
T Consensus 401 lr~~I~~V~Qd~~LF~~TI~~NI~~g~~-~at~eei~~a~k~a~~~d~I~~lp~g~dt~vg 460 (567)
T COG1132 401 LRKRIGIVSQDPLLFSGTIRENIALGRP-DATDEEIEEALKLANAHEFIANLPDGYDTIVG 460 (567)
T ss_pred HHHhccEEcccceeecccHHHHHhcCCC-CCCHHHHHHHHHHhChHHHHHhCcccccceec
Confidence 9999999999999999999999999964 79999999999999999999999999999985
|
|
| >PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-59 Score=584.39 Aligned_cols=461 Identities=19% Similarity=0.219 Sum_probs=389.7
Q ss_pred hHhhhhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000984 707 TRRLAYLNKPEIPVILAGTIAAMANGVILPIYGLLISSVIETFFKPPHELKKDSRFWALIYLALGAGSFLLSPAQSYFFA 786 (1198)
Q Consensus 707 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 (1198)
+++++.+.+++++.+++++++.++..++....++++..++|....+... ......+..+++++.++..++.+++.++..
T Consensus 10 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (588)
T PRK11174 10 TRWLKQQSKPAKRWLNLSILLGFLSGLLLIAQAWLLATILQALIIENIP-REALLPPFILLILLFVLRALLAWLRERVGF 88 (588)
T ss_pred hHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567778888888898899888898888888999999999876421111 111223344455566677888899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhCcccccccCCCChhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q 000984 787 VAGNKLIQRIRSMCFEKVIHMEVSWFDEPEHSSGAIGARLSADAASVRALVGDALARIVQNISTAAAGLIIAFTASWQLA 866 (1198)
Q Consensus 787 ~~~~~~~~~Lr~~l~~~ll~~p~~fFd~~~~~~G~i~~r~s~D~~~i~~~l~~~l~~~i~~~~~~i~~li~~~~~~~~l~ 866 (1198)
..+.+...++|.++|+|++++|++||+ ++++|++++|+++|++.+++++...+..++..++.+++.++++++++|+++
T Consensus 89 ~~~~~~~~~lr~~~~~~ll~~~~~~~~--~~~~g~l~s~~~~dv~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~ 166 (588)
T PRK11174 89 KAGQHIRQQIRQQVLDKLQQLGPAWIQ--GKPAGSWATLVLEQVEDMHDFYARYLPQMALAVLVPLLILIAVFPINWAAG 166 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCchhhc--cCCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999 589999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhchhHHHHHhcchHHHHHHHHHHhhhHHHHhHHHHHHH
Q 000984 867 LIILVMLPLIGVSGYTQMKFMKGFSADAKMKYEEASQVANDAVGSIRTVASFCAEEKVMQLYKKKCEAPMKTGIRQGMVS 946 (1198)
Q Consensus 867 l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 946 (1198)
+++++++|+.+++.....++.++..++.++..++.++.+.|.++|+++||+|+.|+.+.++|.+..++..+...+..+..
T Consensus 167 l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (588)
T PRK11174 167 LILLGTAPLIPLFMALVGMGAADANRRNFLALARLSGHFLDRLRGLETLRLFNRGEAETESIRSASEDFRQRTMEVLRMA 246 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999998888888888888888888899999999999999999999999999999999999999998888777776
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHH---------HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH
Q 000984 947 GGGFGASFFLLFAFYAASFYAGARLVEDGKATFSDV---------FKVFFSLTMTAIGISQSSSFSSDSNKAKSAAASIF 1017 (1198)
Q Consensus 947 ~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~~t~g~l---------~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~ 1017 (1198)
....++...+..+..+++++++++.+. |.+|+|.+ +.+..+...+..|+..+......++++..+.+|+.
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~t~G~l~~~~~~~~~~~~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~ 325 (588)
T PRK11174 247 FLSSAVLEFFASISIALVAVYFGFSYL-GELNFGHYGTGVTLFAGFFVLILAPEFYQPLRDLGTFYHAKAQAVGAAESLV 325 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh-cccccccccccchHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666555555555455455554443 67776654 22335556678899999999999999999999999
Q ss_pred HHhcCCCCCCCCCCCCCcccCCcccEEEeeeeEECCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCC
Q 000984 1018 AIIDRESKIDPSDESGTILEDVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDP 1097 (1198)
Q Consensus 1018 ~~l~~~~~~~~~~~~~~~~~~~~G~I~f~nVsf~Y~~~~~~~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp 1097 (1198)
++++.+++.+... ....+.+..++|+|+||+|.|++ ++++|+|+||+|+|||++||||+||||||||+++|+|+| |
T Consensus 326 ~~l~~~~~~~~~~-~~~~~~~~~~~i~~~~vsf~~~~--~~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p 401 (588)
T PRK11174 326 TFLETPLAHPQQG-EKELASNDPVTIEAEDLEILSPD--GKTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-P 401 (588)
T ss_pred HHHcCCCcccCCC-ccccCCCCCceEEEEeeEEeccC--CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-C
Confidence 9998765422111 11111123457999999998863 346999999999999999999999999999999999999 9
Q ss_pred CCCeEEECCcccCCCChHHHHhhcceeccccccccccHHHHHhcCCCCCCCHHHHHHHHHHcchHHHHHhcccccccee
Q 000984 1098 DAGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQVRTSRL 1176 (1198)
Q Consensus 1098 ~~G~I~IDG~dI~~i~l~~LR~~IsiV~Qdp~LF~gTIreNI~~g~~~~~tdeei~~Al~~A~l~dfI~~LP~g~dt~v 1176 (1198)
++|+|++||+|+++++.+++|++|++|||||+||+|||||||+||+ +++||||+++|++.|++||||++||+||||.|
T Consensus 402 ~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~LF~~TI~eNI~~g~-~~~~~eei~~al~~a~l~~~i~~lp~G~dT~v 479 (588)
T PRK11174 402 YQGSLKINGIELRELDPESWRKHLSWVGQNPQLPHGTLRDNVLLGN-PDASDEQLQQALENAWVSEFLPLLPQGLDTPI 479 (588)
T ss_pred CCcEEEECCEecccCCHHHHHhheEEecCCCcCCCcCHHHHhhcCC-CCCCHHHHHHHHHHhCHHHHHHhccccccccc
Confidence 9999999999999999999999999999999999999999999995 47999999999999999999999999999986
|
|
| >TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-59 Score=591.68 Aligned_cols=463 Identities=19% Similarity=0.265 Sum_probs=405.4
Q ss_pred hHhhhhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000984 707 TRRLAYLNKPEIPVILAGTIAAMANGVILPIYGLLISSVIETFFKPPHELKKDSRFWALIYLALGAGSFLLSPAQSYFFA 786 (1198)
Q Consensus 707 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 (1198)
+++++.+.+++++.+...++++++..++....++++..++|....... ......+.+.++++.++..++.+++.++..
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~p~~~~~iiD~v~~~~~--~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (708)
T TIGR01193 144 LLKFIPLITRQKKLIVNIVIAAIIVTLISIAGSYYLQKIIDTYIPHKM--MGTLGIISIGLIIAYIIQQILSYIQIFLLN 221 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555566677777777777777777778888999999987653221 112222333444556667788899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhCcccccccCCCChhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q 000984 787 VAGNKLIQRIRSMCFEKVIHMEVSWFDEPEHSSGAIGARLSADAASVRALVGDALARIVQNISTAAAGLIIAFTASWQLA 866 (1198)
Q Consensus 787 ~~~~~~~~~Lr~~l~~~ll~~p~~fFd~~~~~~G~i~~r~s~D~~~i~~~l~~~l~~~i~~~~~~i~~li~~~~~~~~l~ 866 (1198)
..+.++..++|.++|+|++++|++||+ ++++|++++|++ |.+.+.+++...+..++..++.+++.++++++++|+++
T Consensus 222 ~~~~~~~~~l~~~~~~~ll~l~~~~f~--~~~~G~~~~r~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~ 298 (708)
T TIGR01193 222 VLGQRLSIDIILSYIKHLFELPMSFFS--TRRTGEIVSRFT-DASSIIDALASTILSLFLDMWILVIVGLFLVRQNMLLF 298 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHhC--CCchhHHHHHhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 999999999999999999999999999 589999999998 99999999988888888888888888888999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhchhHHHHHhcchHHHHHHHHHHhhhHHHHhHHHHHHH
Q 000984 867 LIILVMLPLIGVSGYTQMKFMKGFSADAKMKYEEASQVANDAVGSIRTVASFCAEEKVMQLYKKKCEAPMKTGIRQGMVS 946 (1198)
Q Consensus 867 l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 946 (1198)
+++++.+|+++++.+++.++.++..++.++..++..+.+.|+++|+++||+||.|+.+.++|.+..++..+...+.....
T Consensus 299 li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (708)
T TIGR01193 299 LLSLLSIPVYAVIIILFKRTFNKLNHDAMQANAVLNSSIIEDLNGIETIKSLTSEAERYSKIDSEFGDYLNKSFKYQKAD 378 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999888888877
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhcCCCCC
Q 000984 947 GGGFGASFFLLFAFYAASFYAGARLVEDGKATFSDVFKVFFSLTMTAIGISQSSSFSSDSNKAKSAAASIFAIIDRESKI 1026 (1198)
Q Consensus 947 ~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~~t~g~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~ 1026 (1198)
.....+..++..+..++++++|++++..|.+|+|+++++..+...+..|+..+......++.+..+.+|+.++++.+++.
T Consensus 379 ~~~~~~~~~~~~~~~i~il~~g~~lv~~g~ls~G~lva~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~ 458 (708)
T TIGR01193 379 QGQQAIKAVTKLILNVVILWTGAYLVMRGKLTLGQLITFNALLSYFLTPLENIINLQPKLQAARVANNRLNEVYLVDSEF 458 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcc
Confidence 77777777777777888999999999999999999999999999999999999999999999999999999999877654
Q ss_pred CCCCCCCCcccCCcccEEEeeeeEECCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECC
Q 000984 1027 DPSDESGTILEDVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDG 1106 (1198)
Q Consensus 1027 ~~~~~~~~~~~~~~G~I~f~nVsf~Y~~~~~~~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG 1106 (1198)
+.... ....+...|.|+|+||+|+|++ ++++|+|+||+|+|||++||||+||||||||+++|+|+|+|++|+|+|||
T Consensus 459 ~~~~~-~~~~~~~~~~I~~~~vsf~y~~--~~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~~G~I~idg 535 (708)
T TIGR01193 459 INKKK-RTELNNLNGDIVINDVSYSYGY--GSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNG 535 (708)
T ss_pred ccccc-ccCCCCCCCcEEEEEEEEEcCC--CCcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCCcEEEECC
Confidence 32211 0112334678999999999973 34799999999999999999999999999999999999999999999999
Q ss_pred cccCCCChHHHHhhcceeccccccccccHHHHHhcCCCCCCCHHHHHHHHHHcchHHHHHhccccccceee
Q 000984 1107 VEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQVRTSRLL 1177 (1198)
Q Consensus 1107 ~dI~~i~l~~LR~~IsiV~Qdp~LF~gTIreNI~~g~~~~~tdeei~~Al~~A~l~dfI~~LP~g~dt~v~ 1177 (1198)
+|+++++++++|++|++|||||+||+|||||||++|..++++|||+++|++.|+++|||++||+||||.|.
T Consensus 536 ~~i~~~~~~~lr~~i~~v~Q~~~lf~gTI~eNi~l~~~~~~~~~~i~~a~~~a~l~~~i~~lp~gldt~i~ 606 (708)
T TIGR01193 536 FSLKDIDRHTLRQFINYLPQEPYIFSGSILENLLLGAKENVSQDEIWAACEIAEIKDDIENMPLGYQTELS 606 (708)
T ss_pred EEHHHcCHHHHHHheEEEecCceehhHHHHHHHhccCCCCCCHHHHHHHHHHhCCHHHHHhcccccCcEec
Confidence 99999999999999999999999999999999999843479999999999999999999999999999874
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc. |
| >TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-58 Score=583.91 Aligned_cols=453 Identities=20% Similarity=0.211 Sum_probs=401.5
Q ss_pred cCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000984 714 NKPEIPVILAGTIAAMANGVILPIYGLLISSVIETFFKPPHELKKDSRFWALIYLALGAGSFLLSPAQSYFFAVAGNKLI 793 (1198)
Q Consensus 714 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 793 (1198)
.++.++.+...++++++..++....++++..++|....... ......+.+.++++.++..++.+++.++....+.++.
T Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~l~~p~~~~~iid~v~~~~~--~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (686)
T TIGR03797 131 LRGARRDLLAILAMGLLGTLLGMLVPIATGILIGTAIPDAD--RSLLVQIALALLAAAVGAAAFQLAQSLAVLRLETRMD 208 (686)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777777777777777788888888898887653211 1122333444555666778889999999999999999
Q ss_pred HHHHHHHHHHHHhCcccccccCCCChhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 000984 794 QRIRSMCFEKVIHMEVSWFDEPEHSSGAIGARLSADAASVRALVGDALARIVQNISTAAAGLIIAFTASWQLALIILVML 873 (1198)
Q Consensus 794 ~~Lr~~l~~~ll~~p~~fFd~~~~~~G~i~~r~s~D~~~i~~~l~~~l~~~i~~~~~~i~~li~~~~~~~~l~l~~l~~~ 873 (1198)
.++|.++|+|++++|++||+ ++++|++++|++ |++.+++++...+...+..+..+++.++++++++|++++++++++
T Consensus 209 ~~l~~~~~~~ll~~~~~~~~--~~~~g~~~~r~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l~~~ 285 (686)
T TIGR03797 209 ASLQAAVWDRLLRLPVSFFR--QYSTGDLASRAM-GISQIRRILSGSTLTTLLSGIFALLNLGLMFYYSWKLALVAVALA 285 (686)
T ss_pred HHHHHHHHHHHHcCCHHHHC--CCChhHHHHHHh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999 589999999998 899999999988888888888888888999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhchhHHHHHhcchHHHHHHHHHHhhhHHHHhHHHHHHHhhHHHHH
Q 000984 874 PLIGVSGYTQMKFMKGFSADAKMKYEEASQVANDAVGSIRTVASFCAEEKVMQLYKKKCEAPMKTGIRQGMVSGGGFGAS 953 (1198)
Q Consensus 874 pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 953 (1198)
|+.+++.++..++.++..++.++..++..+.+.|+++|+++||+|+.|+++.++|.+..++..+...+..........+.
T Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 365 (686)
T TIGR03797 286 LVAIAVTLVLGLLQVRKERRLLELSGKISGLTVQLINGISKLRVAGAENRAFARWAKLFSRQRKLELSAQRIENLLTVFN 365 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999888999998888899999999999999999999999999999999999999999999999999888888877777
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhcCCCCCCCCCCCC
Q 000984 954 FFLLFAFYAASFYAGARLVEDGKATFSDVFKVFFSLTMTAIGISQSSSFSSDSNKAKSAAASIFAIIDRESKIDPSDESG 1033 (1198)
Q Consensus 954 ~~~~~~~~~~~~~~g~~l~~~g~~t~g~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~ 1033 (1198)
.++..+..++++++|++++.+|.+|+|+++++..+...+..|+..+......++.+..+.+|+.++++.+++.+...
T Consensus 366 ~~i~~~~~~~il~~g~~lv~~g~ltiG~lva~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~~~--- 442 (686)
T TIGR03797 366 AVLPVLTSAALFAAAISLLGGAGLSLGSFLAFNTAFGSFSGAVTQLSNTLISILAVIPLWERAKPILEALPEVDEAK--- 442 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCc---
Confidence 78888888899999999999999999999999999999999999999999999999999999999998766532211
Q ss_pred CcccCCcccEEEeeeeEECCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCC
Q 000984 1034 TILEDVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQ 1113 (1198)
Q Consensus 1034 ~~~~~~~G~I~f~nVsf~Y~~~~~~~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~~i~ 1113 (1198)
..+....|.|+|+||+|+|+++ ++++|+|+||+|+|||++||||+||||||||+++|+|+|+|++|+|+|||+|+++++
T Consensus 443 ~~~~~~~~~I~~~nvsf~Y~~~-~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~ 521 (686)
T TIGR03797 443 TDPGKLSGAIEVDRVTFRYRPD-GPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDLAGLD 521 (686)
T ss_pred CCCCCCCceEEEEEEEEEcCCC-CccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcCcCC
Confidence 1122345789999999999743 357999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHhhcceeccccccccccHHHHHhcCCCCCCCHHHHHHHHHHcchHHHHHhccccccceee
Q 000984 1114 LKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQVRTSRLL 1177 (1198)
Q Consensus 1114 l~~LR~~IsiV~Qdp~LF~gTIreNI~~g~~~~~tdeei~~Al~~A~l~dfI~~LP~g~dt~v~ 1177 (1198)
.+++|++|++|||||+||+|||||||++|+ + ++|||+++|++.|+++|+|++||+||||.+-
T Consensus 522 ~~~lr~~i~~v~Q~~~lf~gTI~eNi~~~~-~-~~~e~i~~al~~a~l~~~i~~lp~G~dt~ig 583 (686)
T TIGR03797 522 VQAVRRQLGVVLQNGRLMSGSIFENIAGGA-P-LTLDEAWEAARMAGLAEDIRAMPMGMHTVIS 583 (686)
T ss_pred HHHHHhccEEEccCCccCcccHHHHHhcCC-C-CCHHHHHHHHHHcCcHHHHHhcccccccccc
Confidence 999999999999999999999999999995 3 8999999999999999999999999999874
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif |
| >TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-58 Score=570.26 Aligned_cols=530 Identities=14% Similarity=0.116 Sum_probs=413.0
Q ss_pred HHHHHHhhchhhH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 000984 46 FYKLFTFADSADT----ALMIIGSIGAIGNGLCLPLMTLLFGDLINTFGDNQNNSETVDKVSKVAVKFVYLGIGSGIASF 121 (1198)
Q Consensus 46 ~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 121 (1198)
+.++++|+.+..+ .++++.+++.++..++....+++.+.+++..... +...+......+.+.++++.++..+..|
T Consensus 79 ~~~l~~~~~p~~~~~~~~~l~~~~~~~~~~t~~~l~~~~l~~~iid~l~~~-~~~~f~~~l~~~~l~~~~~~~~~~~~~~ 157 (659)
T TIGR00954 79 LDFLLKILIPRVFCKETGLLILIAFLLVSRTYLSVYVATLDGQIESSIVRR-SPRNFAWILFKWFLIAPPASFINSAIKY 157 (659)
T ss_pred HHHHHHHHcCcccchHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhc-CHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5556777765443 3455555556666667777888889988876532 1111221122223333344445555666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhccCCcchHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000984 122 LQVTCWMITGERQATRIRGLYLKTILRQDVAFFDNETNTGEVVGRMSGDTVLIQDAMGEKVGKFLQLMATFLGGFLIAFI 201 (1198)
Q Consensus 122 ~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~f~~~~~~G~i~~r~s~D~~~i~~~~~~~~~~~~~~~~~~i~~~i~~~~ 201 (1198)
+...+......++..++|..++++....++.+||+ ++|++.+|+++|++.+.+.+...+..++..++.+++..+.++.
T Consensus 158 ~~~~~~~~~r~~l~~~l~~~~~~~~~~~~~~~~d~--~~g~~~srlt~Dv~~i~~~~~~~~~~l~~~~~~ii~~~~~L~~ 235 (659)
T TIGR00954 158 LLKELKLRFRVRLTRYLYSKYLSGFTFYKVSNLDS--RIQNPDQLLTQDVEKFCDSVVELYSNLTKPILDVILYSFKLLT 235 (659)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCceEEeccCCC--CCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666677788888888888877788888874 6899999999999999999999999999999988877776665
Q ss_pred -HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcHHHHHHHHHHHHHHHHHHH
Q 000984 202 -KGWLLTLVMLSSIPLLAMSGGVMAIMISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYKSG 280 (1198)
Q Consensus 202 -~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~ 280 (1198)
.+|.+++++++.+|+.+++.+++.+.+.+...+.++..++..+.+.|.++|+++||+|+.|+.+.+++.+..++..+..
T Consensus 236 ~~~~~l~l~~l~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~I~~~~~e~~e~~~~~~~~~~l~~~~ 315 (659)
T TIGR00954 236 ALGSVGPAGLFAYLFATGVVLTKLRPPIGKLTVEEQALEGEYRYVHSRLIMNSEEIAFYQGNKVEKETVMSSFYRLVEHL 315 (659)
T ss_pred hcchHHHHHHHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhCCHHHHHHHHHHHHHHHHHHH
Confidence 9999999899999999999999999999999999999999999999999999999999999999999999888887777
Q ss_pred HHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHH-h----CCCCHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH
Q 000984 281 VQEGLAAGIGLGMVMLIVF--CSYALSVWYGGKLIL-E----EGYNGGQVVNVMVA----VLTGSMSLGEASPCLSAFGA 349 (1198)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~g~~l~~-~----~~~~~~~~~~~~~~----~l~~~~~l~~~~~~~~~~~~ 349 (1198)
.+...+.+....+..++.. ...+++++.|...+. . +.++.|.++..+.. +.....++..+......+..
T Consensus 316 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~~~~~~~~~g~~t~g~~~~~f~~~~~~~~~l~~~~~~l~~~~~~i~~ 395 (659)
T TIGR00954 316 NLIIKFRFSYGFLDNIVAKYTWSAVGLVAVSIPIFDKTHPAFLEMSEEELMQEFYNNGRLLLKAADALGRLMLAGRDMTR 395 (659)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7766666555544444332 122222333332322 2 56777765542222 23335577777788888999
Q ss_pred HHHHHHHHHHHHccCCCCCcc------CCC---C-------------cccCCCcccEEEEeEEEEcCCCCCCccccceeE
Q 000984 350 GQAAAFKMFETINRKPEIDAY------DTK---G-------------KILDDIRGDIELRDVYFSYPARPNEQIFSGFSI 407 (1198)
Q Consensus 350 ~~~~~~r~~~~~~~~~~~~~~------~~~---~-------------~~~~~~~g~i~~~~v~~~y~~~~~~~~l~~i~l 407 (1198)
+..+..|++++++.+++.+.. ... . .......+.|+++|++|+|++ ++++|+|+||
T Consensus 396 ~~~~~~Ri~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nv~~~~~~--~~~il~~isl 473 (659)
T TIGR00954 396 LAGFTARVDTLLQVLDDVKSGNFKRPRVEEIESGREGGRNSNLVPGRGIVEYQDNGIKFENIPLVTPN--GDVLIESLSF 473 (659)
T ss_pred HHHHHHHHHHHHHHHHHHhcccccccccccccccccccccccccccccccccCCCeEEEEeeEEECCC--CCeeeecceE
Confidence 999999999998653321100 000 0 001112356999999999974 2469999999
Q ss_pred EEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcceEEEcCCCCCCcccHHHHHhcCC---
Q 000984 408 SISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGK--- 484 (1198)
Q Consensus 408 ~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~Ni~~~~--- 484 (1198)
++++||+++|+||||||||||+++|+|+++|++|+|.+++ |++++||||+|++|++|++|||.++.
T Consensus 474 ~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~~~~G~i~~~~-----------~~~i~~v~Q~~~l~~~tv~eni~~~~~~~ 542 (659)
T TIGR00954 474 EVPSGNHLLICGPNGCGKSSLFRILGELWPVYGGRLTKPA-----------KGKLFYVPQRPYMTLGTLRDQIIYPDSSE 542 (659)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEeecC-----------CCcEEEECCCCCCCCcCHHHHHhcCCChh
Confidence 9999999999999999999999999999999999999875 56899999999999999999999874
Q ss_pred ----CCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhhccCCCEEEEeCCCCCCCHHhHHH
Q 000984 485 ----DDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKV 560 (1198)
Q Consensus 485 ----~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal~~~~~illlDe~ts~lD~~~~~~ 560 (1198)
+..++++++++++.+++++++.. |.|+||..+ .+.+||||||||++||||++++|+++|||||||+||+++++.
T Consensus 543 ~~~~~~~~~~~i~~~l~~~~l~~~~~~-~~g~~~~~~-~~~~LSgGqkQRl~iARal~~~p~illLDEpts~LD~~~~~~ 620 (659)
T TIGR00954 543 DMKRRGLSDKDLEQILDNVQLTHILER-EGGWSAVQD-WMDVLSGGEKQRIAMARLFYHKPQFAILDECTSAVSVDVEGY 620 (659)
T ss_pred hhhccCCCHHHHHHHHHHcCCHHHHhh-cCCcccccc-cccCCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHH
Confidence 33567889999999999998877 999999876 567999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCeEEEEecCcchhhccCEEEEEeC
Q 000984 561 VQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHR 595 (1198)
Q Consensus 561 i~~~i~~~~~~~t~i~itH~~~~~~~~d~i~~l~~ 595 (1198)
+.+.+++. ++|+|+||||++.++.||+|++|++
T Consensus 621 l~~~l~~~--~~tvI~isH~~~~~~~~d~il~l~~ 653 (659)
T TIGR00954 621 MYRLCREF--GITLFSVSHRKSLWKYHEYLLYMDG 653 (659)
T ss_pred HHHHHHHc--CCEEEEEeCchHHHHhCCEEEEEeC
Confidence 99998773 8999999999999999999999974
|
|
| >PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-58 Score=566.59 Aligned_cols=461 Identities=18% Similarity=0.174 Sum_probs=392.8
Q ss_pred hhhhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCch--hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000984 709 RLAYLNKPEIPVILAGTIAAMANGVILPIYGLLISSVIETFFKPPHE--LKKDSRFWALIYLALGAGSFLLSPAQSYFFA 786 (1198)
Q Consensus 709 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 (1198)
+++++.+++++.+++++++.++..++....+++++++++........ ......++...+++++++..++.++..++.+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (574)
T PRK11160 6 PFLKLYKRHWFMLSLGILLAIVTLLASIGLLTLSGWFLSASAVAGLAGLYSFNYMLPAAGVRGAAIGRTAGRYGERLVSH 85 (574)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556677777788888888887777778888888888865321110 0001111222344456677888899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhCcccccccCCCChhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q 000984 787 VAGNKLIQRIRSMCFEKVIHMEVSWFDEPEHSSGAIGARLSADAASVRALVGDALARIVQNISTAAAGLIIAFTASWQLA 866 (1198)
Q Consensus 787 ~~~~~~~~~Lr~~l~~~ll~~p~~fFd~~~~~~G~i~~r~s~D~~~i~~~l~~~l~~~i~~~~~~i~~li~~~~~~~~l~ 866 (1198)
..+.++..++|.++|+|++++|++||+ ++++|++++|+++|++.+++++...+..++..++.+++.++++++++|+++
T Consensus 86 ~~~~~~~~~lR~~l~~~l~~~~~~~~~--~~~~g~~~srl~~Dv~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~ 163 (574)
T PRK11160 86 DATFRVLTHLRVFTFSKLLPLSPAGLA--RYRQGDLLNRLVADVDTLDHLYLRLISPLVAALVVILVLTIGLSFFDLTLA 163 (574)
T ss_pred HHHHHHHHHHHHHHHHHhhccChHhhc--cCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999 589999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHH-HHHHHHHHhhhHHHHHHHHHHHHHHHHHHhchhHHHHHhcchHHHHHHHHHHhhhHHHHhHHHHHH
Q 000984 867 LIILVMLPLIGVS-GYTQMKFMKGFSADAKMKYEEASQVANDAVGSIRTVASFCAEEKVMQLYKKKCEAPMKTGIRQGMV 945 (1198)
Q Consensus 867 l~~l~~~pl~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~~ 945 (1198)
+++++++|++.++ .++..++.++..++.++..++.++.+.|.++|+++||+|+.|+++.++|.+..++..+...+....
T Consensus 164 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 243 (574)
T PRK11160 164 LTLGGILLLLLLLLPLLFYRLGKKPGQDLTHLRAQYRVQLTEWLQGQAELTLFGAEDRYRQQLEQTEQQWLAAQRRQANL 243 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHCCHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9998888876554 466677778888888889999999999999999999999999999999999999999999999888
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHH-HHHHHHHHhhhhhHHHHHHHHHHHHHHHhcCCC
Q 000984 946 SGGGFGASFFLLFAFYAASFYAGARLVEDGKATFSDVFKVFFSLTM-TAIGISQSSSFSSDSNKAKSAAASIFAIIDRES 1024 (1198)
Q Consensus 946 ~~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~~t~g~l~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~~~~ 1024 (1198)
.+...++..++..+..++++++|+++ ..|.+++|.++++..+... ...++..+......++++..+.+|+.++++.++
T Consensus 244 ~~~~~~~~~~~~~~~~~~i~~~g~~~-~~g~~t~g~l~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~s~~ri~~ll~~~~ 322 (574)
T PRK11160 244 TGLSQALMILANGLTVVLMLWLAAGG-VGGNAQPGALIALFVFAALAAFEALMPVAGAFQHLGQVIASARRINEITEQKP 322 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-hccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 88888888777777778888999988 4789999999998877644 345777788888899999999999999998776
Q ss_pred CCCCCCCCCCcccCCcccEEEeeeeEECCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEE
Q 000984 1025 KIDPSDESGTILEDVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITL 1104 (1198)
Q Consensus 1025 ~~~~~~~~~~~~~~~~G~I~f~nVsf~Y~~~~~~~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~I 1104 (1198)
+.+.... ....+..+.|+|+||+|+|+++ ++++|+|+||+|+|||++|||||||||||||+++|+|+|+|++|+|++
T Consensus 323 ~~~~~~~--~~~~~~~~~i~~~~v~f~y~~~-~~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p~~G~I~i 399 (574)
T PRK11160 323 EVTFPTT--STAAADQVSLTLNNVSFTYPDQ-PQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILL 399 (574)
T ss_pred CCCCCcc--cCCCCCCCeEEEEEEEEECCCC-CCcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEE
Confidence 5322111 1112245789999999999753 246999999999999999999999999999999999999999999999
Q ss_pred CCcccCCCChHHHHhhcceeccccccccccHHHHHhcCCCCCCCHHHHHHHHHHcchHHHHHhccccccceee
Q 000984 1105 DGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQVRTSRLL 1177 (1198)
Q Consensus 1105 DG~dI~~i~l~~LR~~IsiV~Qdp~LF~gTIreNI~~g~~~~~tdeei~~Al~~A~l~dfI~~LP~g~dt~v~ 1177 (1198)
||+|+++++.+++|++|++|||||+||+|||+|||++|+ ++++|||+++|++.+++++||++ |+||||.|-
T Consensus 400 ~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~~Ni~~~~-~~~~~~~i~~al~~~~l~~~i~~-p~GldT~vg 470 (574)
T PRK11160 400 NGQPIADYSEAALRQAISVVSQRVHLFSATLRDNLLLAA-PNASDEALIEVLQQVGLEKLLED-DKGLNAWLG 470 (574)
T ss_pred CCEEhhhCCHHHHHhheeEEcccchhhcccHHHHhhcCC-CccCHHHHHHHHHHcCCHHHHcC-ccccCchhc
Confidence 999999999999999999999999999999999999995 47999999999999999999999 999999873
|
|
| >TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-58 Score=580.72 Aligned_cols=461 Identities=23% Similarity=0.331 Sum_probs=403.9
Q ss_pred hHhhhhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000984 707 TRRLAYLNKPEIPVILAGTIAAMANGVILPIYGLLISSVIETFFKPPHELKKDSRFWALIYLALGAGSFLLSPAQSYFFA 786 (1198)
Q Consensus 707 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 (1198)
.++++.+.+++++.+...++++++..++....|+++..++|....... ......+.++++++.++..++.+++.++..
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~p~~~~~iiD~~~~~~~--~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (694)
T TIGR03375 135 KHWFWSTLKESWPLYRDVLIASLLINLLALASPLFVMNVYDRVVPNQA--FETLWVLAIGVALAIVFDFVLKTLRSYFLD 212 (694)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCc--HhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555667777777777777777778888888888887653211 111222333444455667788999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhCcccccccCCCChhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q 000984 787 VAGNKLIQRIRSMCFEKVIHMEVSWFDEPEHSSGAIGARLSADAASVRALVGDALARIVQNISTAAAGLIIAFTASWQLA 866 (1198)
Q Consensus 787 ~~~~~~~~~Lr~~l~~~ll~~p~~fFd~~~~~~G~i~~r~s~D~~~i~~~l~~~l~~~i~~~~~~i~~li~~~~~~~~l~ 866 (1198)
..+.++..++|.++|+|++++|++| + ++++|++++|+ +|++.+++++...+...+..++.+++.++++++++|+++
T Consensus 213 ~~~~~~~~~l~~~~~~~ll~l~~~~-~--~~~~G~~~~r~-~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~ 288 (694)
T TIGR03375 213 VAGKKADLILSAKLFERVLGLRMEA-R--PASVGSFANQL-REFESVRDFFTSATLTALIDLPFALLFLLVIAIIGGPLV 288 (694)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCccc-C--CCChhHHHHHH-HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 9999999999999999999999998 5 47899999999 799999999999888888888888888889999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhchhHHHHHhcchHHHHHHHHHHhhhHHHHhHHHHHHH
Q 000984 867 LIILVMLPLIGVSGYTQMKFMKGFSADAKMKYEEASQVANDAVGSIRTVASFCAEEKVMQLYKKKCEAPMKTGIRQGMVS 946 (1198)
Q Consensus 867 l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 946 (1198)
++.++.+|+.+++.++..++.++..++.++..++..+.+.|+++|+++||+|+.|+.+.++|.+..++..+...+.....
T Consensus 289 li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (694)
T TIGR03375 289 WVPLVAIPLILLPGLLLQRPLSRLAEESMRESAQRNAVLVESLSGLETIKALNAEGRFQRRWEQTVAALARSGLKSRFLS 368 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999988888
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhcCCCCC
Q 000984 947 GGGFGASFFLLFAFYAASFYAGARLVEDGKATFSDVFKVFFSLTMTAIGISQSSSFSSDSNKAKSAAASIFAIIDRESKI 1026 (1198)
Q Consensus 947 ~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~~t~g~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~ 1026 (1198)
.....+...+..+..++++++|++++.+|.+|+|+++++..+...+..|+..+......++.+..+.+|+.++++.+++.
T Consensus 369 ~~~~~~~~~~~~~~~~~il~~g~~~v~~g~ls~G~l~a~~~~~~~~~~p~~~l~~~~~~~~~~~~~~~ri~~il~~~~e~ 448 (694)
T TIGR03375 369 NLATNFAQFIQQLVSVAIVVVGVYLISDGELTMGGLIACVMLSGRALAPLGQLAGLLTRYQQAKTALQSLDELMQLPVER 448 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 88888888888888888999999999999999999999999999999999999999999999999999999999887653
Q ss_pred CCCCCCCCcccCCcccEEEeeeeEECCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECC
Q 000984 1027 DPSDESGTILEDVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDG 1106 (1198)
Q Consensus 1027 ~~~~~~~~~~~~~~G~I~f~nVsf~Y~~~~~~~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG 1106 (1198)
+... .....+...|.|+|+||+|+|++. ++++|+|+||+|+|||++||||+||||||||+++|+|+|+|++|+|++||
T Consensus 449 ~~~~-~~~~~~~~~~~I~~~~vsf~Y~~~-~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg 526 (694)
T TIGR03375 449 PEGT-RFLHRPRLQGEIEFRNVSFAYPGQ-ETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDG 526 (694)
T ss_pred CCCC-CCCCCCCccceEEEEEEEEEeCCC-CccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECC
Confidence 3211 111122345789999999999743 35799999999999999999999999999999999999999999999999
Q ss_pred cccCCCChHHHHhhcceeccccccccccHHHHHhcCCCCCCCHHHHHHHHHHcchHHHHHhcccccccee
Q 000984 1107 VEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQVRTSRL 1176 (1198)
Q Consensus 1107 ~dI~~i~l~~LR~~IsiV~Qdp~LF~gTIreNI~~g~~~~~tdeei~~Al~~A~l~dfI~~LP~g~dt~v 1176 (1198)
+|+++++++++|++|++|||||+||+|||||||++++ ++++|||+++|++.++++|+|++||+||||.+
T Consensus 527 ~~l~~~~~~~lr~~i~~v~Q~~~lf~~TI~eNi~~~~-~~~~~~~i~~a~~~~~l~~~i~~lp~gl~T~i 595 (694)
T TIGR03375 527 VDIRQIDPADLRRNIGYVPQDPRLFYGTLRDNIALGA-PYADDEEILRAAELAGVTEFVRRHPDGLDMQI 595 (694)
T ss_pred EEhhhCCHHHHHhccEEECCChhhhhhhHHHHHhCCC-CCCCHHHHHHHHHHcChHHHHHhCccccccee
Confidence 9999999999999999999999999999999999995 47999999999999999999999999999987
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export. |
| >TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-58 Score=581.62 Aligned_cols=464 Identities=17% Similarity=0.173 Sum_probs=405.6
Q ss_pred hHhhhhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000984 707 TRRLAYLNKPEIPVILAGTIAAMANGVILPIYGLLISSVIETFFKPPHELKKDSRFWALIYLALGAGSFLLSPAQSYFFA 786 (1198)
Q Consensus 707 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 (1198)
+++++.+.+++++.+...++++++..++....|+++..++|....... ......+.+.++++.++..++.+++.++..
T Consensus 142 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~p~~~~~iid~v~~~~~--~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (710)
T TIGR03796 142 LRALWRRLRGSRGALLYLLLAGLLLVLPGLVIPAFSQIFVDEILVQGR--QDWLRPLLLGMGLTALLQGVLTWLQLYYLR 219 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555556667666677777777777777788888888887653211 111222334445556667788999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhCcccccccCCCChhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q 000984 787 VAGNKLIQRIRSMCFEKVIHMEVSWFDEPEHSSGAIGARLSADAASVRALVGDALARIVQNISTAAAGLIIAFTASWQLA 866 (1198)
Q Consensus 787 ~~~~~~~~~Lr~~l~~~ll~~p~~fFd~~~~~~G~i~~r~s~D~~~i~~~l~~~l~~~i~~~~~~i~~li~~~~~~~~l~ 866 (1198)
..+.++..++|.++|+|++++|++||+ ++++|++++|+++| +.+++++...+..++..++.+++.++++++++|+++
T Consensus 220 ~~~~~~~~~l~~~~~~~ll~l~~~~~~--~~~~g~~~~r~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~ 296 (710)
T TIGR03796 220 RLQIKLAVGMSARFLWHILRLPVRFFA--QRHAGDIASRVQLN-DQVAEFLSGQLATTALDAVMLVFYALLMLLYDPVLT 296 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHHc--CCcccHHHHHhhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999 58999999999988 789999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhchhHHHHHhcchHHHHHHHHHHhhhHHHHhHHHHHHH
Q 000984 867 LIILVMLPLIGVSGYTQMKFMKGFSADAKMKYEEASQVANDAVGSIRTVASFCAEEKVMQLYKKKCEAPMKTGIRQGMVS 946 (1198)
Q Consensus 867 l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 946 (1198)
+++++.+|+.+++.++..++.++..++.++..++..+.+.|+++|+++||+++.|+.+.++|.+...+..+...+.....
T Consensus 297 li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (710)
T TIGR03796 297 LIGIAFAAINVLALQLVSRRRVDANRRLQQDAGKLTGVAISGLQSIETLKASGLESDFFSRWAGYQAKLLNAQQELGVLT 376 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999888888888889999999999999999999999999999999999999998888888888
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhcCCCCC
Q 000984 947 GGGFGASFFLLFAFYAASFYAGARLVEDGKATFSDVFKVFFSLTMTAIGISQSSSFSSDSNKAKSAAASIFAIIDRESKI 1026 (1198)
Q Consensus 947 ~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~~t~g~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~ 1026 (1198)
.....+..++..+..++++++|++++.+|.+|+|+++++..+...+..|+..+......++.+..+.+|+.++++.+++.
T Consensus 377 ~~~~~~~~~i~~~~~~~il~~g~~~v~~g~lt~G~lva~~~l~~~~~~p~~~l~~~~~~~~~~~~~~~ri~~il~~~~e~ 456 (710)
T TIGR03796 377 QILGVLPTLLTSLNSALILVVGGLRVMEGQLTIGMLVAFQSLMSSFLEPVNNLVGFGGTLQELEGDLNRLDDVLRNPVDP 456 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcc
Confidence 87778888888888889999999999999999999999999999999999999999999999999999999999877654
Q ss_pred CCCCC---C-CCcc-cCCcccEEEeeeeEECCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCe
Q 000984 1027 DPSDE---S-GTIL-EDVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGH 1101 (1198)
Q Consensus 1027 ~~~~~---~-~~~~-~~~~G~I~f~nVsf~Y~~~~~~~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~ 1101 (1198)
+.... . ...+ +...|.|+|+||+|+|++. ++++|+|+||+|+|||+|||||+||||||||+++|+|+|+|++|+
T Consensus 457 ~~~~~~~~~~~~~~~~~~~~~I~~~~vsf~y~~~-~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~ 535 (710)
T TIGR03796 457 LLEEEEAPAAGSEPSPRLSGYVELRNITFGYSPL-EPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGE 535 (710)
T ss_pred ccccccccccccccCCCCCCeEEEEEEEEecCCC-CCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcE
Confidence 32110 0 0111 2346789999999999853 357999999999999999999999999999999999999999999
Q ss_pred EEECCcccCCCChHHHHhhcceeccccccccccHHHHHhcCCCCCCCHHHHHHHHHHcchHHHHHhccccccceee
Q 000984 1102 ITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQVRTSRLL 1177 (1198)
Q Consensus 1102 I~IDG~dI~~i~l~~LR~~IsiV~Qdp~LF~gTIreNI~~g~~~~~tdeei~~Al~~A~l~dfI~~LP~g~dt~v~ 1177 (1198)
|++||+|+++++.+++|++|++|||||+||+|||||||++++ ++++||++++|++.++++|+|++||+||||.+.
T Consensus 536 I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTi~eNi~l~~-~~~~~~~i~~al~~~~l~~~i~~lp~gl~t~i~ 610 (710)
T TIGR03796 536 ILFDGIPREEIPREVLANSVAMVDQDIFLFEGTVRDNLTLWD-PTIPDADLVRACKDAAIHDVITSRPGGYDAELA 610 (710)
T ss_pred EEECCEeHHHCCHHHHHhheeEEecCChhhhccHHHHhhCCC-CCCCHHHHHHHHHHhCCHHHHHhCcCcccceec
Confidence 999999999999999999999999999999999999999985 479999999999999999999999999999874
|
This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin. |
| >TIGR02857 CydD thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-57 Score=554.35 Aligned_cols=451 Identities=20% Similarity=0.214 Sum_probs=389.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000984 718 IPVILAGTIAAMANGVILPIYGLLISSVIETFFKPPHELKKDSRFWALIYLALGAGSFLLSPAQSYFFAVAGNKLIQRIR 797 (1198)
Q Consensus 718 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr 797 (1198)
++.+..+++++++.+++.+..++++++++|....+.. .......+.++++++.++..++.+++.++....+.+...++|
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iid~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr 80 (529)
T TIGR02857 2 RRALALLGLLGALGALLIIAQAWLLARVIDGLISAGE-PLAELLPALGALALAVLLRALLGWLGERAAARAAAAVKSQLR 80 (529)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566777777778888889999999987642111 112233445555666777888899999999999999999999
Q ss_pred HHHHHHHHhCcccccccCCCChhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 000984 798 SMCFEKVIHMEVSWFDEPEHSSGAIGARLSADAASVRALVGDALARIVQNISTAAAGLIIAFTASWQLALIILVMLPLIG 877 (1198)
Q Consensus 798 ~~l~~~ll~~p~~fFd~~~~~~G~i~~r~s~D~~~i~~~l~~~l~~~i~~~~~~i~~li~~~~~~~~l~l~~l~~~pl~~ 877 (1198)
.++|++++++|..||+ ++++|++++|+++|++.+++.+...+..++..++.+++.+++++.++|.+++++++.+|+..
T Consensus 81 ~~l~~~l~~~~~~~~~--~~~~g~~~~~l~~di~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~l~~~~l~~ 158 (529)
T TIGR02857 81 ERLLAAVAALGPGWLQ--GRPSGELATLALEGVEALDGYFARYLPQLVLAVIIPLAILAAVFPADWISGLILLLTAPLIP 158 (529)
T ss_pred HHHHHHHHhCCchhhc--cCChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 9999999999999999 58999999999999999999999999999999999999999999999999999999999988
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhchhHHHHHhcchHHHHHHHHHHhhhHHHHhHHHHHHHhhHHHHHHHHH
Q 000984 878 VSGYTQMKFMKGFSADAKMKYEEASQVANDAVGSIRTVASFCAEEKVMQLYKKKCEAPMKTGIRQGMVSGGGFGASFFLL 957 (1198)
Q Consensus 878 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 957 (1198)
++.+...++.++..++.++..++..+.+.|.++|+++||+|+.|+++.++|.+..++..+...+..+.......+..++.
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (529)
T TIGR02857 159 IFMILIGWAAQAAARKQWAALSRLSGHFLDRLRGLPTLKLFGRAKAQAAAIARSSEEYRERTMRVLRIAFLSSAVLELFA 238 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888888888899999999999999999999999999999999999998888877777666666666665
Q ss_pred HHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCccc
Q 000984 958 FAFYAASFYAGARLVEDGKATFSDVFKVFFSLTMTAIGISQSSSFSSDSNKAKSAAASIFAIIDRESKIDPSDESGTILE 1037 (1198)
Q Consensus 958 ~~~~~~~~~~g~~l~~~g~~t~g~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~~~ 1037 (1198)
.+..++++.++++.+..|.+|+|.++++..+...+..|+..+......++++..+.+|+.++++.+++.... ...+.
T Consensus 239 ~~~~~~~~~~~~~~~~~g~~t~g~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~ll~~~~~~~~~---~~~~~ 315 (529)
T TIGR02857 239 TLSVALVAVYIGFRLLAGDLDLATGLFVLLLAPEFYLPLRQLGADYHARADGVAAAEALFAVLDAPRPLAGK---APVTA 315 (529)
T ss_pred HHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCC---cCCCC
Confidence 555556556666777799999999999999999999999999999999999999999999999854322111 11111
Q ss_pred CCcccEEEeeeeEECCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHH
Q 000984 1038 DVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWL 1117 (1198)
Q Consensus 1038 ~~~G~I~f~nVsf~Y~~~~~~~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~~i~l~~L 1117 (1198)
+..+.|+|+||+|+|+++ ++++|+|+||+|+|||++||||+||||||||+++|+|+|+|++|+|++||+|+++++.+++
T Consensus 316 ~~~~~i~~~~v~f~y~~~-~~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I~~~g~~i~~~~~~~l 394 (529)
T TIGR02857 316 APAPSLEFSGLSVAYPGR-RAPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADSW 394 (529)
T ss_pred CCCCeEEEEEEEEECCCC-CcccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEehhhCCHHHH
Confidence 123679999999999854 3479999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcceeccccccccccHHHHHhcCCCCCCCHHHHHHHHHHcchHHHHHhcccccccee
Q 000984 1118 RQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQVRTSRL 1176 (1198)
Q Consensus 1118 R~~IsiV~Qdp~LF~gTIreNI~~g~~~~~tdeei~~Al~~A~l~dfI~~LP~g~dt~v 1176 (1198)
|++|++|||||++|+|||||||++|. ++++|+++++|++.++++|||++||+||||.+
T Consensus 395 r~~i~~v~Q~~~lf~~ti~~Ni~~~~-~~~~~~~i~~a~~~~~l~~~i~~lp~Gldt~v 452 (529)
T TIGR02857 395 RDQIAWVPQHPFLFAGTIAENIRLAR-PDASDAEIRRALERAGLDEFVAALPQGLDTLI 452 (529)
T ss_pred HhheEEEcCCCcccCcCHHHHHhccC-CCCCHHHHHHHHHHcCcHHHHHhCcccccchh
Confidence 99999999999999999999999985 47899999999999999999999999999986
|
Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD |
| >TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-57 Score=567.67 Aligned_cols=462 Identities=21% Similarity=0.285 Sum_probs=403.3
Q ss_pred hHhhhhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000984 707 TRRLAYLNKPEIPVILAGTIAAMANGVILPIYGLLISSVIETFFKPPHELKKDSRFWALIYLALGAGSFLLSPAQSYFFA 786 (1198)
Q Consensus 707 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 (1198)
+++++.+.++++..+...++++++..++....++++..++|....... ......+.++++++.++..++.+++.++..
T Consensus 127 ~~~~~~~~~~~~~~~~~~~~~s~~~~ll~l~~p~~~~~iid~v~~~~~--~~~l~~l~~~~~~~~~~~~~~~~l~~~~~~ 204 (694)
T TIGR01846 127 FSWFIPAIIRYRKQFREVLLISLALQLFALVTPLLFQVVIDKVLVHRG--LSTLSVLALAMLAVAIFEPALGGLRTYLFA 204 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444555566666666666777777777788888888887653211 112233344455566677888999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhCcccccccCCCChhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q 000984 787 VAGNKLIQRIRSMCFEKVIHMEVSWFDEPEHSSGAIGARLSADAASVRALVGDALARIVQNISTAAAGLIIAFTASWQLA 866 (1198)
Q Consensus 787 ~~~~~~~~~Lr~~l~~~ll~~p~~fFd~~~~~~G~i~~r~s~D~~~i~~~l~~~l~~~i~~~~~~i~~li~~~~~~~~l~ 866 (1198)
..+.++..++|.++|+|++++|++||+ ++++|++++|+ +|++.+++++...+..++..++.+++.++++++++|+++
T Consensus 205 ~~~~~~~~~l~~~~~~~l~~l~~~~f~--~~~~g~~~~rl-~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~ 281 (694)
T TIGR01846 205 HLTSRIDVELGARLYRHLLGLPLGYFE--SRRVGDTVARV-RELEQIRNFLTGSALTVVLDLLFVVVFLAVMFFYSPTLT 281 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHcC--CCCHHHHHHHh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999 58999999999 699999999988888888777777777889999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhchhHHHHHhcchHHHHHHHHHHhhhHHHHhHHHHHHH
Q 000984 867 LIILVMLPLIGVSGYTQMKFMKGFSADAKMKYEEASQVANDAVGSIRTVASFCAEEKVMQLYKKKCEAPMKTGIRQGMVS 946 (1198)
Q Consensus 867 l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 946 (1198)
+++++++|+++++.++..+++++..++..+..++.++.+.|+++|+++||+||.|+.+.++|.+..++..+...+.....
T Consensus 282 li~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 361 (694)
T TIGR01846 282 GVVIGSLVCYALLSVFVGPILRKRVEDKFERSAAATSFLVESVTGIETIKATATEPQFQNRWDRQLAAYVAASFRVTNLG 361 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcccCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999989888888888888888999999999999999999999999999999999999999999988888
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhcCCCCC
Q 000984 947 GGGFGASFFLLFAFYAASFYAGARLVEDGKATFSDVFKVFFSLTMTAIGISQSSSFSSDSNKAKSAAASIFAIIDRESKI 1026 (1198)
Q Consensus 947 ~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~~t~g~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~ 1026 (1198)
.....+...+..+..++++++|++++.+|.+|+|+++++..+...+..|+..+......++.+..+.+|+.++++.+++.
T Consensus 362 ~~~~~~~~~i~~~~~~~il~~g~~lv~~g~it~G~lia~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~ 441 (694)
T TIGR01846 362 NIAGQAIELIQKLTFAILLWFGAHLVIGGALSPGQLVAFNMLAGRVTQPVLRLAQLWQDFQQTGIALERLGDILNSPTEP 441 (694)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCc
Confidence 88778888888888888999999999999999999999999999999999999999999999999999999999877654
Q ss_pred CCCCCCCCcccCCcccEEEeeeeEECCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECC
Q 000984 1027 DPSDESGTILEDVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDG 1106 (1198)
Q Consensus 1027 ~~~~~~~~~~~~~~G~I~f~nVsf~Y~~~~~~~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG 1106 (1198)
+.. .....+...|.|+|+||+|+|+++ ++++|+|+||+|+|||++||||+||||||||+++|+|+|+|++|+|+|||
T Consensus 442 ~~~--~~~~~~~~~~~i~~~~vsf~y~~~-~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~~G~I~idg 518 (694)
T TIGR01846 442 RSA--GLAALPELRGAITFENIRFRYAPD-SPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDG 518 (694)
T ss_pred cCC--CCCCCCCCCCeEEEEEEEEEcCCC-CccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECC
Confidence 321 111122345789999999999743 34699999999999999999999999999999999999999999999999
Q ss_pred cccCCCChHHHHhhcceeccccccccccHHHHHhcCCCCCCCHHHHHHHHHHcchHHHHHhccccccceee
Q 000984 1107 VEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQVRTSRLL 1177 (1198)
Q Consensus 1107 ~dI~~i~l~~LR~~IsiV~Qdp~LF~gTIreNI~~g~~~~~tdeei~~Al~~A~l~dfI~~LP~g~dt~v~ 1177 (1198)
+|+++++.+++|++|++|||||+||+|||||||++++ ++++++++++|++.++++|+|++||+||||.+.
T Consensus 519 ~~i~~~~~~~~r~~i~~v~q~~~lf~~ti~eNi~~~~-~~~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~ 588 (694)
T TIGR01846 519 VDLAIADPAWLRRQMGVVLQENVLFSRSIRDNIALCN-PGAPFEHVIHAAKLAGAHDFISELPQGYNTEVG 588 (694)
T ss_pred EehhhCCHHHHHHhCeEEccCCeehhhhHHHHHhcCC-CCCCHHHHHHHHHHcChHHHHHhCcCccCcEec
Confidence 9999999999999999999999999999999999985 479999999999999999999999999999864
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-59 Score=513.44 Aligned_cols=446 Identities=22% Similarity=0.296 Sum_probs=368.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhhhhHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHH
Q 000984 721 ILAGTIAAMANGVILPIYGLLISSVIETFFKPPHELKKDSRFWALIYLALGA------GSFLLSPAQSYFFAVAGNKLIQ 794 (1198)
Q Consensus 721 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~ 794 (1198)
.+.+.++..+.-++....+.+..+.++.+..+ ... .......+.++-+ .+.++.-+++++...+.....+
T Consensus 217 v~~cl~ll~i~rli~~~~pi~~k~iv~~ltap-~~~---~~~~~~~~v~L~flqg~gtgsG~~~nlRtfLWi~VqQyttR 292 (790)
T KOG0056|consen 217 VVFCLFLLIIGRLINVSLPILSKWIVDELTAP-DTF---QYSLVFLYVFLKFLQGGGTGSGFLNNLRTFLWIPVQQYTTR 292 (790)
T ss_pred HHHHHHHHHHHHHHhhhhHHhHHHHHHhhcCc-chh---hHHHHHHHHHHHHHhcCCccccchhhhheeEEEEhhHhHHH
Confidence 33444444444455555666666666665432 111 1111222322222 2356677788888889999999
Q ss_pred HHHHHHHHHHHhCcccccccCCCChhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHHHHHH
Q 000984 795 RIRSMCFEKVIHMEVSWFDEPEHSSGAIGARLSADAASVRALVGDALARIVQNISTAAAGLIIA-FTASWQLALIILVML 873 (1198)
Q Consensus 795 ~Lr~~l~~~ll~~p~~fFd~~~~~~G~i~~r~s~D~~~i~~~l~~~l~~~i~~~~~~i~~li~~-~~~~~~l~l~~l~~~ 873 (1198)
.+-.++|+|+..+++.|+- .+.+|+++.-+.+..+.+. ++...+.++...++-+.+++++. ...+|+++++++.+.
T Consensus 293 ~ie~~lfrHlh~LSlrwHL--~rrtGeVLrvmdrGtssvt-ll~yvVF~i~PtllDl~va~vYF~~~Fn~wFgLIVfl~m 369 (790)
T KOG0056|consen 293 EIETELFRHLHNLSLRWHL--NRRTGEVLRVMDRGTSSVT-LLEYVVFQIGPTLLDLGVAMVYFFIKFNIWFGLIVFLMM 369 (790)
T ss_pred HHHHHHHHHHHhhceeeee--cccccceeehhccCcchhh-HHHHHHhhcccHHHHhhhhhhhhhhhHhHHHHHHHHHHH
Confidence 9999999999999999998 4789999999998888887 77777777777777666666644 457999999999888
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhchhHHHHHhcchHHHHHHHHHHhhhHHHHhHHHHHHHhhHHHHH
Q 000984 874 PLIGVSGYTQMKFMKGFSADAKMKYEEASQVANDAVGSIRTVASFCAEEKVMQLYKKKCEAPMKTGIRQGMVSGGGFGAS 953 (1198)
Q Consensus 874 pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 953 (1198)
.+++...........+..|++.....+..++..+++-+..|||-||+|+++.++|.+...++.+..++.........-+.
T Consensus 370 ~lY~~~Ti~iTeWRTk~rR~Mn~~~nesrAr~vDsllNFETVKyy~Ae~yEverYreAil~Yqk~E~ks~~sLnfLN~~Q 449 (790)
T KOG0056|consen 370 LLYCYVTIKITEWRTKARRKMNNSWNESRARQVDSLLNFETVKYYNAEDYEVERYREAILKYQKQEWKSLASLNFLNIVQ 449 (790)
T ss_pred HHHhheeeeeehhhHHHHHHhhhhhhhhhhhhhhhhhcchhhhccCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 88877777777777777788888888888999999999999999999999999999999999998877666555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhcCCCCCCCCCCCC
Q 000984 954 FFLLFAFYAASFYAGARLVEDGKATFSDVFKVFFSLTMTAIGISQSSSFSSDSNKAKSAAASIFAIIDRESKIDPSDESG 1033 (1198)
Q Consensus 954 ~~~~~~~~~~~~~~g~~l~~~g~~t~g~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~ 1033 (1198)
..+..+..++.-.+.++++..+..|+|+++.|.+|+..+..|+.........+|+...-+|++++++++++|..+.+. .
T Consensus 450 n~Ii~lgll~gsll~aY~Vt~q~ltVGDfVlf~TYliqLy~PLN~FGT~YR~iQ~nfiDmEnmfdllkee~eVvd~P~-a 528 (790)
T KOG0056|consen 450 NGIIGLGLLAGSLLCAYRVTEQTLTVGDFVLFLTYLIQLYMPLNFFGTYYRSIQKNFIDMENMFDLLKEEPEVVDLPG-A 528 (790)
T ss_pred hhhhhhHHhhhhheeeeeeeeccccccceehHHHHHHHHhCchHHHHHHHHHHHHhhhhHHHHHHHhhcCchhhcCCC-C
Confidence 555555555555667778888999999999999999999999999999999999999999999999999888754332 2
Q ss_pred CcccCCcccEEEeeeeEECCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCC
Q 000984 1034 TILEDVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQ 1113 (1198)
Q Consensus 1034 ~~~~~~~G~I~f~nVsf~Y~~~~~~~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~~i~ 1113 (1198)
++....+|.|+|+||+|+|. |++|||+||||+++||++||+|||||+||||++++|+||||.++|+|+|||+||+++.
T Consensus 529 ~pl~~~~G~i~fsnvtF~Y~--p~k~vl~disF~v~pGktvAlVG~SGaGKSTimRlLfRffdv~sGsI~iDgqdIrnvt 606 (790)
T KOG0056|consen 529 PPLKVTQGKIEFSNVTFAYD--PGKPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFDVNSGSITIDGQDIRNVT 606 (790)
T ss_pred CCccccCCeEEEEEeEEecC--CCCceeecceEEecCCcEEEEECCCCCchhHHHHHHHHHhhccCceEEEcCchHHHHH
Confidence 33344689999999999996 4678999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHhhcceeccccccccccHHHHHhcCCCCCCCHHHHHHHHHHcchHHHHHhccccccceee
Q 000984 1114 LKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQVRTSRLL 1177 (1198)
Q Consensus 1114 l~~LR~~IsiV~Qdp~LF~gTIreNI~~g~~~~~tdeei~~Al~~A~l~dfI~~LP~g~dt~v~ 1177 (1198)
.++||++||+||||.+||++||..||+||++ .|+|||+.+|||.|++||-|.++|+||+|+|-
T Consensus 607 ~~SLRs~IGVVPQDtvLFNdTI~yNIryak~-~AsneevyaAAkAA~IHdrIl~fPegY~t~VG 669 (790)
T KOG0056|consen 607 QSSLRSSIGVVPQDTVLFNDTILYNIRYAKP-SASNEEVYAAAKAAQIHDRILQFPEGYNTRVG 669 (790)
T ss_pred HHHHHHhcCcccCcceeecceeeeheeecCC-CCChHHHHHHHHHhhHHHHHhcCchhhhhhhh
Confidence 9999999999999999999999999999965 89999999999999999999999999999873
|
|
| >PRK11176 lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-56 Score=554.49 Aligned_cols=461 Identities=28% Similarity=0.396 Sum_probs=397.7
Q ss_pred hhhhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000984 709 RLAYLNKPEIPVILAGTIAAMANGVILPIYGLLISSVIETFFKPPHELKKDSRFWALIYLALGAGSFLLSPAQSYFFAVA 788 (1198)
Q Consensus 709 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 (1198)
+++.+.+++++.++..+++.++..+.....++++..+++....... .....+....++++.++..++.+++.++..+.
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 92 (582)
T PRK11176 15 RLWPTIAPFKAGLIVAGVALILNAASDTFMLSLLKPLLDDGFGKAD--RSVLKWMPLVVIGLMILRGITSFISSYCISWV 92 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455556666666666666666666677777777776553211 11111222333445666778888888899999
Q ss_pred HHHHHHHHHHHHHHHHHhCcccccccCCCChhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 000984 789 GNKLIQRIRSMCFEKVIHMEVSWFDEPEHSSGAIGARLSADAASVRALVGDALARIVQNISTAAAGLIIAFTASWQLALI 868 (1198)
Q Consensus 789 ~~~~~~~Lr~~l~~~ll~~p~~fFd~~~~~~G~i~~r~s~D~~~i~~~l~~~l~~~i~~~~~~i~~li~~~~~~~~l~l~ 868 (1198)
+.+...++|.++++++++.|.++|+ +...|++++|+++|++.+++.+...+..++..++.+++.++++++++|+++++
T Consensus 93 ~~~~~~~lr~~~~~~l~~~~~~~~~--~~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~ 170 (582)
T PRK11176 93 SGKVVMTMRRRLFGHMMGMPVSFFD--KQSTGTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQLSLI 170 (582)
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHhC--CCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999 58899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhchhHHHHHhcchHHHHHHHHHHhhhHHHHhHHHHHHHhh
Q 000984 869 ILVMLPLIGVSGYTQMKFMKGFSADAKMKYEEASQVANDAVGSIRTVASFCAEEKVMQLYKKKCEAPMKTGIRQGMVSGG 948 (1198)
Q Consensus 869 ~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 948 (1198)
+++++|+.+++.+...+++++..++.++...+..+.+.|.++|+++||+|+.|+.+.++|++..++..+...+.......
T Consensus 171 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (582)
T PRK11176 171 LIVIAPIVSIAIRVVSKRFRNISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNRMRQQGMKMVSASSI 250 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999998888888999988888888889999999999999999999999999999999999999999999888888777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhcCCCCCCC
Q 000984 949 GFGASFFLLFAFYAASFYAGARLVEDGKATFSDVFKVFFSLTMTAIGISQSSSFSSDSNKAKSAAASIFAIIDRESKIDP 1028 (1198)
Q Consensus 949 ~~~~~~~~~~~~~~~~~~~g~~l~~~g~~t~g~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~~~ 1028 (1198)
...+..++..+...+++++|++++..|.+++|+++++..+...+..|+..+......++.+..+.+|+.++++.+++.+.
T Consensus 251 ~~~~~~~~~~~~~~~i~~~g~~~~~~g~is~g~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~~~~~~~~~~ 330 (582)
T PRK11176 251 SDPIIQLIASLALAFVLYAASFPSVMDTLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDLEQEKDE 330 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCC
Confidence 77777777777788888999999999999999999999999999999999999999999999999999999986654221
Q ss_pred CCCCCCcccCCcccEEEeeeeEECCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcc
Q 000984 1029 SDESGTILEDVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVE 1108 (1198)
Q Consensus 1029 ~~~~~~~~~~~~G~I~f~nVsf~Y~~~~~~~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~d 1108 (1198)
.. ...++..++|+|+||+|+|+++ ++++|+|+||+|+|||++||||+||||||||+++|+|+|+|++|+|++||+|
T Consensus 331 ~~---~~~~~~~~~i~~~~vsf~y~~~-~~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~ 406 (582)
T PRK11176 331 GK---RVIERAKGDIEFRNVTFTYPGK-EVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHD 406 (582)
T ss_pred CC---cCCCCCCCeEEEEEEEEecCCC-CCccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCCCCceEEECCEE
Confidence 11 1122334679999999999753 3579999999999999999999999999999999999999999999999999
Q ss_pred cCCCChHHHHhhcceeccccccccccHHHHHhcCCCCCCCHHHHHHHHHHcchHHHHHhccccccceee
Q 000984 1109 IQKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQVRTSRLL 1177 (1198)
Q Consensus 1109 I~~i~l~~LR~~IsiV~Qdp~LF~gTIreNI~~g~~~~~tdeei~~Al~~A~l~dfI~~LP~g~dt~v~ 1177 (1198)
+++++.+++|++|++|||||+||+|||||||.+|++++++|||+++|++.++++++|++||+|+||.+-
T Consensus 407 i~~~~~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~al~~~~l~~~i~~lp~Gldt~ig 475 (582)
T PRK11176 407 LRDYTLASLRNQVALVSQNVHLFNDTIANNIAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIG 475 (582)
T ss_pred hhhcCHHHHHhhceEEccCceeecchHHHHHhcCCCCCCCHHHHHHHHHHhCcHHHHHhcccccCceeC
Confidence 999999999999999999999999999999999865458999999999999999999999999999874
|
|
| >TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-56 Score=551.24 Aligned_cols=460 Identities=27% Similarity=0.411 Sum_probs=408.9
Q ss_pred hhhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000984 710 LAYLNKPEIPVILAGTIAAMANGVILPIYGLLISSVIETFFKPPHELKKDSRFWALIYLALGAGSFLLSPAQSYFFAVAG 789 (1198)
Q Consensus 710 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 (1198)
++.+.++.++.+++++++.++.+++.+..++++..+++....... .....++..+++++.++..++.+++.++....+
T Consensus 5 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 82 (571)
T TIGR02203 5 LWSYVRPYKAGLVLAGVAMILVAATESTLAALLKPLLDDGFGGRD--RSVLWWVPLVVIGLAVLRGICSFVSTYLLSWVS 82 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCc--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445567777788888888888888888888888876543211 112223344566667777888899999999999
Q ss_pred HHHHHHHHHHHHHHHHhCcccccccCCCChhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 000984 790 NKLIQRIRSMCFEKVIHMEVSWFDEPEHSSGAIGARLSADAASVRALVGDALARIVQNISTAAAGLIIAFTASWQLALII 869 (1198)
Q Consensus 790 ~~~~~~Lr~~l~~~ll~~p~~fFd~~~~~~G~i~~r~s~D~~~i~~~l~~~l~~~i~~~~~~i~~li~~~~~~~~l~l~~ 869 (1198)
.++...+|..+++++++.|.++|+ +.+.|++++|+++|++.+++++...+..++..++.+++.++++++++|++++++
T Consensus 83 ~~~~~~lr~~l~~~~~~~~~~~~~--~~~~g~~~~~l~~di~~i~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~l~~i~ 160 (571)
T TIGR02203 83 NKVVRDIRVRMFEKLLGLPVSFFD--RQPTGTLLSRITFDSEQVASAATDAFIVLVRETLTVIGLFIVLLYYSWQLTLIV 160 (571)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHhC--CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 999999999999999999999999 588999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhchhHHHHHhcchHHHHHHHHHHhhhHHHHhHHHHHHHhhH
Q 000984 870 LVMLPLIGVSGYTQMKFMKGFSADAKMKYEEASQVANDAVGSIRTVASFCAEEKVMQLYKKKCEAPMKTGIRQGMVSGGG 949 (1198)
Q Consensus 870 l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 949 (1198)
+++.|+.+++.++..++.++..++.++..++..+.+.|.++|+++||+++.++++.++|.+..++..+...+.....+..
T Consensus 161 l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (571)
T TIGR02203 161 VVMLPVLSILMRRVSKRLRRISKEIQNSMGQVTTVAEETLQGYRVVKLFGGQAYETRRFDAVSNRNRRLAMKMTSAGSIS 240 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999988888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhcCCCCCCCC
Q 000984 950 FGASFFLLFAFYAASFYAGARLVEDGKATFSDVFKVFFSLTMTAIGISQSSSFSSDSNKAKSAAASIFAIIDRESKIDPS 1029 (1198)
Q Consensus 950 ~~~~~~~~~~~~~~~~~~g~~l~~~g~~t~g~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~ 1029 (1198)
..+...+..+..++++++|++++.+|.+|+|.++++..+...+..|+..+......++++..+.+|+.++++.+++.+..
T Consensus 241 ~~~~~~~~~~~~~~~~~~g~~~~~~g~lt~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~ 320 (571)
T TIGR02203 241 SPITQLIASLALAVVLFIALFQAQAGSLTAGDFTAFITAMIALIRPLKSLTNVNAPMQRGLAAAESLFTLLDSPPEKDTG 320 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCC
Confidence 88888888888888999999999999999999999999999999999999999999999999999999999876543211
Q ss_pred CCCCCcccCCcccEEEeeeeEECCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCccc
Q 000984 1030 DESGTILEDVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEI 1109 (1198)
Q Consensus 1030 ~~~~~~~~~~~G~I~f~nVsf~Y~~~~~~~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI 1109 (1198)
. ....+..++|+|+||+|+|+++ +.++|+|+||+|+|||++||||+||||||||+++|+|+|+|++|+|++||+|+
T Consensus 321 ~---~~~~~~~~~i~~~~v~f~y~~~-~~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I~i~g~~i 396 (571)
T TIGR02203 321 T---RAIERARGDVEFRNVTFRYPGR-DRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDL 396 (571)
T ss_pred C---CCCCCCCCeEEEEEEEEEcCCC-CCccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEeH
Confidence 1 1112235689999999999754 35799999999999999999999999999999999999999999999999999
Q ss_pred CCCChHHHHhhcceeccccccccccHHHHHhcCCCCCCCHHHHHHHHHHcchHHHHHhccccccceee
Q 000984 1110 QKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQVRTSRLL 1177 (1198)
Q Consensus 1110 ~~i~l~~LR~~IsiV~Qdp~LF~gTIreNI~~g~~~~~tdeei~~Al~~A~l~dfI~~LP~g~dt~v~ 1177 (1198)
++++.+++|++|++|||||+||+|||||||.++++++++|+++++|++.+++++++.+||+|+||.+-
T Consensus 397 ~~~~~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~~l~~~~l~~~i~~lp~gldt~i~ 464 (571)
T TIGR02203 397 ADYTLASLRRQVALVSQDVVLFNDTIANNIAYGRTEQADRAEIERALAAAYAQDFVDKLPLGLDTPIG 464 (571)
T ss_pred HhcCHHHHHhhceEEccCcccccccHHHHHhcCCCCCCCHHHHHHHHHHcChHHHHHhCcCcccceec
Confidence 99999999999999999999999999999999853379999999999999999999999999999864
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes. |
| >PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-56 Score=551.36 Aligned_cols=458 Identities=21% Similarity=0.265 Sum_probs=381.7
Q ss_pred HhhhhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000984 708 RRLAYLNKPEIPVILAGTIAAMANGVILPIYGLLISSVIETFFKPPHELKKDSRFWALIYLALGAGSFLLSPAQSYFFAV 787 (1198)
Q Consensus 708 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 (1198)
+++..+.+++++.+...+++.++..++....++++..++|...............++++++++.++..++.+++.++...
T Consensus 12 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~iid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (592)
T PRK10790 12 KRLLAYGSPWRKPLGLAVLMLWVAAAAEVSGPLLISYFIDNMVAKGNLPLGLVAGLAAAYVGLQLLAAGLHYAQSLLFNR 91 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555667777777777777778888888889998887653211100011112233444455677788889999999
Q ss_pred HHHHHHHHHHHHHHHHHHhCcccccccCCCChhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 000984 788 AGNKLIQRIRSMCFEKVIHMEVSWFDEPEHSSGAIGARLSADAASVRALVGDALARIVQNISTAAAGLIIAFTASWQLAL 867 (1198)
Q Consensus 788 ~~~~~~~~Lr~~l~~~ll~~p~~fFd~~~~~~G~i~~r~s~D~~~i~~~l~~~l~~~i~~~~~~i~~li~~~~~~~~l~l 867 (1198)
.+.+...++|.++|++++++|++||+ ++++|++++|+++|++.+++.+...+..++..+..+++.++++++++|++++
T Consensus 92 ~~~~~~~~lr~~l~~~l~~~~~~~~~--~~~~g~~~~~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l 169 (592)
T PRK10790 92 AAVGVVQQLRTDVMDAALRQPLSAFD--TQPVGQLISRVTNDTEVIRDLYVTVVATVLRSAALIGAMLVAMFSLDWRMAL 169 (592)
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHhC--CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999 5889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhchhHHHHHhcchHHHHHHHHHHhhhHHHHhHHHHHHHh
Q 000984 868 IILVMLPLIGVSGYTQMKFMKGFSADAKMKYEEASQVANDAVGSIRTVASFCAEEKVMQLYKKKCEAPMKTGIRQGMVSG 947 (1198)
Q Consensus 868 ~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 947 (1198)
++++++|+.++...+..++.++..++.++..++....+.|.++|+++||+|+.|+++.++|.+..++..+...+.....+
T Consensus 170 i~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (592)
T PRK10790 170 VAIMIFPAVLVVMVIYQRYSTPIVRRVRAYLADINDGFNEVINGMSVIQQFRQQARFGERMGEASRSHYMARMQTLRLDG 249 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999998888877888887877888888888899999999999999999999999999999998888877776665544
Q ss_pred hH-HHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhcCCCCC
Q 000984 948 GG-FGASFFLLFAFYAASFYAGARLVEDGKATFSDVFKVFFSLTMTAIGISQSSSFSSDSNKAKSAAASIFAIIDRESKI 1026 (1198)
Q Consensus 948 ~~-~~~~~~~~~~~~~~~~~~g~~l~~~g~~t~g~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~ 1026 (1198)
.. ..+..++..+...+++++++. +..|.+++|.++++..+...+..|+..+......++++..+.+|+.++++.+++.
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~is~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~ 328 (592)
T PRK10790 250 FLLRPLLSLFSALILCGLLMLFGF-SASGTIEVGVLYAFISYLGRLNEPLIELTTQQSMLQQAVVAGERVFELMDGPRQQ 328 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcc
Confidence 32 223333333322233333333 5789999999999999999999999999999999999999999999999865432
Q ss_pred CCCCCCCCcccCCcccEEEeeeeEECCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECC
Q 000984 1027 DPSDESGTILEDVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDG 1106 (1198)
Q Consensus 1027 ~~~~~~~~~~~~~~G~I~f~nVsf~Y~~~~~~~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG 1106 (1198)
.. . . ..+...++|+|+||+|+|++ +.++|+|+||+|+|||++||||+||||||||+++|+|+|+|++|+|++||
T Consensus 329 ~~-~-~--~~~~~~~~i~~~~v~f~y~~--~~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg 402 (592)
T PRK10790 329 YG-N-D--DRPLQSGRIDIDNVSFAYRD--DNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDG 402 (592)
T ss_pred CC-C-C--ccCCCCCeEEEEEEEEEeCC--CCceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECC
Confidence 11 1 1 11223578999999999974 34699999999999999999999999999999999999999999999999
Q ss_pred cccCCCChHHHHhhcceeccccccccccHHHHHhcCCCCCCCHHHHHHHHHHcchHHHHHhcccccccee
Q 000984 1107 VEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQVRTSRL 1176 (1198)
Q Consensus 1107 ~dI~~i~l~~LR~~IsiV~Qdp~LF~gTIreNI~~g~~~~~tdeei~~Al~~A~l~dfI~~LP~g~dt~v 1176 (1198)
+|+++++.+++|++|++|||||+||+|||||||++|+ +++|+++++|++.++++++|++||+||||.+
T Consensus 403 ~~i~~~~~~~l~~~i~~v~Q~~~lF~~Ti~~NI~~~~--~~~d~~i~~a~~~~gl~~~i~~lp~Gldt~i 470 (592)
T PRK10790 403 RPLSSLSHSVLRQGVAMVQQDPVVLADTFLANVTLGR--DISEEQVWQALETVQLAELARSLPDGLYTPL 470 (592)
T ss_pred EEhhhCCHHHHHhheEEEccCCccccchHHHHHHhCC--CCCHHHHHHHHHHcCcHHHHHhccccccccc
Confidence 9999999999999999999999999999999999994 6899999999999999999999999999976
|
|
| >TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-54 Score=539.45 Aligned_cols=463 Identities=29% Similarity=0.446 Sum_probs=396.8
Q ss_pred hhhhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000984 709 RLAYLNKPEIPVILAGTIAAMANGVILPIYGLLISSVIETFFKPPHELKKDSRFWALIYLALGAGSFLLSPAQSYFFAVA 788 (1198)
Q Consensus 709 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 (1198)
.++.+.+++++.+.+.+++.++..++....++++..++|..+.... ......+..+++++.++..++.+++.++....
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iid~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (576)
T TIGR02204 8 ALWPFVRPYRGRVLAALVALLITAAATLSLPYAVRLMIDHGFSKDS--SGLLNRYFAFLLVVALVLALGTAARFYLVTWL 85 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhccccc--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445566666777777777788888888889998887543211 11122233344445555667778888999999
Q ss_pred HHHHHHHHHHHHHHHHHhCcccccccCCCChhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 000984 789 GNKLIQRIRSMCFEKVIHMEVSWFDEPEHSSGAIGARLSADAASVRALVGDALARIVQNISTAAAGLIIAFTASWQLALI 868 (1198)
Q Consensus 789 ~~~~~~~Lr~~l~~~ll~~p~~fFd~~~~~~G~i~~r~s~D~~~i~~~l~~~l~~~i~~~~~~i~~li~~~~~~~~l~l~ 868 (1198)
+.++..++|..++++++++|.++|+ +.++|++++|+++|++.+++++...+..++..++.+++.++++++++|+++++
T Consensus 86 ~~~~~~~lr~~l~~~l~~~~~~~~~--~~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 163 (576)
T TIGR02204 86 GERVVADIRRAVFAHLISLSPSFFD--KNRSGEVVSRLTTDTTLLQSVIGSSLSMALRNALMCIGGLIMMFITSPKLTSL 163 (576)
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHc--cCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 9999999999999999999999999 47899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhchhHHHHHhcchHHHHHHHHHHhhhHHHHhHHHHHHHhh
Q 000984 869 ILVMLPLIGVSGYTQMKFMKGFSADAKMKYEEASQVANDAVGSIRTVASFCAEEKVMQLYKKKCEAPMKTGIRQGMVSGG 948 (1198)
Q Consensus 869 ~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 948 (1198)
+++.+|+.+++.++..++.++..++..+...+..+.+.|.++|+++||+|+.|+++.++|.+..++..+...+.......
T Consensus 164 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (576)
T TIGR02204 164 VLLAVPLVLLPILLFGRRVRKLSRESQDRIADAGSYAGETLGAIRTVQAFGHEDAERSRFGGAVEKAYEAARQRIRTRAL 243 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999888888999999889999999999999999999999999999999999999999999888887777766666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhcCCCCCCC
Q 000984 949 GFGASFFLLFAFYAASFYAGARLVEDGKATFSDVFKVFFSLTMTAIGISQSSSFSSDSNKAKSAAASIFAIIDRESKIDP 1028 (1198)
Q Consensus 949 ~~~~~~~~~~~~~~~~~~~g~~l~~~g~~t~g~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~~~ 1028 (1198)
...+...+.....++++++|++++..|.+|+|.++++..+...+..|+..+......+..+..+.+|+.++++.+++.+.
T Consensus 244 ~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~ri~~~l~~~~~~~~ 323 (576)
T TIGR02204 244 LTAIVIVLVFGAIVGVLWVGAHDVIAGKMSAGTLGQFVFYAVMVAGSIGTLSEVWGELQRAAGAAERLIELLQAEPDIKA 323 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCC
Confidence 66665566666677788899999999999999999999999999999999999999999999999999999987654322
Q ss_pred CCCCCCcccCCcccEEEeeeeEECCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcc
Q 000984 1029 SDESGTILEDVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVE 1108 (1198)
Q Consensus 1029 ~~~~~~~~~~~~G~I~f~nVsf~Y~~~~~~~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~d 1108 (1198)
.........+..+.|+|+||+|+|++++++++|+|+||+|+|||++||||+||||||||+++|+|+|+|++|+|++||+|
T Consensus 324 ~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~~G~I~i~g~~ 403 (576)
T TIGR02204 324 PAHPKTLPVPLRGEIEFEQVNFAYPARPDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVD 403 (576)
T ss_pred CCCCccCCcCCCceEEEEEEEEECCCCCCCccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEE
Confidence 11111111123467999999999985433579999999999999999999999999999999999999999999999999
Q ss_pred cCCCChHHHHhhcceeccccccccccHHHHHhcCCCCCCCHHHHHHHHHHcchHHHHHhcccccccee
Q 000984 1109 IQKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQVRTSRL 1176 (1198)
Q Consensus 1109 I~~i~l~~LR~~IsiV~Qdp~LF~gTIreNI~~g~~~~~tdeei~~Al~~A~l~dfI~~LP~g~dt~v 1176 (1198)
+++++.+++|++|++|||||++|+|||||||.+|. ++++|+++++|++.+++++++++||+|+||.+
T Consensus 404 i~~~~~~~~~~~i~~~~Q~~~lf~~Ti~~Ni~~~~-~~~~~~~~~~~l~~~~l~~~i~~l~~gl~t~i 470 (576)
T TIGR02204 404 LRQLDPAELRARMALVPQDPVLFAASVMENIRYGR-PDATDEEVEAAARAAHAHEFISALPEGYDTYL 470 (576)
T ss_pred HHhcCHHHHHHhceEEccCCccccccHHHHHhcCC-CCCCHHHHHHHHHHcCcHHHHHhCCCCCCcee
Confidence 99999999999999999999999999999999985 46899999999999999999999999999976
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. |
| >TIGR01192 chvA glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-54 Score=534.83 Aligned_cols=459 Identities=21% Similarity=0.268 Sum_probs=392.2
Q ss_pred hHhhhhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000984 707 TRRLAYLNKPEIPVILAGTIAAMANGVILPIYGLLISSVIETFFKPPHELKKDSRFWALIYLALGAGSFLLSPAQSYFFA 786 (1198)
Q Consensus 707 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 (1198)
+++++.+.+++++.++.++++.++..++....+++++.++|....... ...+.+.++++.++..+..++..++..
T Consensus 7 ~~~l~~~l~~~k~~~~~~~~~~~~~~~~~~~~p~~~~~iid~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (585)
T TIGR01192 7 YVRALSYLNVHKNRVLLIVIANITLAAITIAEPILFGRIIDAISSKSD-----VLPTLALWAGFGVFNTIAYVLVAREAD 81 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc-----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666778888888888888888888899999999987653211 111222222333444455555566666
Q ss_pred HHHHHHHHHHHHHHHHHHHhCcccccccCCCChhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q 000984 787 VAGNKLIQRIRSMCFEKVIHMEVSWFDEPEHSSGAIGARLSADAASVRALVGDALARIVQNISTAAAGLIIAFTASWQLA 866 (1198)
Q Consensus 787 ~~~~~~~~~Lr~~l~~~ll~~p~~fFd~~~~~~G~i~~r~s~D~~~i~~~l~~~l~~~i~~~~~~i~~li~~~~~~~~l~ 866 (1198)
....++..++|.++|+|++++|++||+ ++++|++++|+++|++.++..+...+..++..++.+++.+++++.++|.++
T Consensus 82 ~~~~~~~~~lr~~~~~~l~~l~~~~~~--~~~~g~~~s~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~ 159 (585)
T TIGR01192 82 RLAHGRRATLLTEAFGRIISMPLSWHQ--QRGTSNALHTLLRATETLFGLWLEFMRQHLATFVALFLLIPTAFAMDWRLS 159 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHhC--CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677777777888999999999999999 588999999999999999999999998888888888888889999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhchhHHHHHhcchHHHHHHHHHHhhhHHHHhHHHHHHH
Q 000984 867 LIILVMLPLIGVSGYTQMKFMKGFSADAKMKYEEASQVANDAVGSIRTVASFCAEEKVMQLYKKKCEAPMKTGIRQGMVS 946 (1198)
Q Consensus 867 l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 946 (1198)
+++++++|+.+++...+.++.++..++.++..++..+.+.|+++|+++||+|+.++.+.+++.+..++..+...+..+..
T Consensus 160 li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (585)
T TIGR01192 160 IVLMVLGILYILIAKLVMQRTKNGQAAVEHHYHNVFKHVSDSISNVSVVHSYNRIEAETSALKQFTNNLLSAQYPVLDWW 239 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999988888888888888888888999999999999999999999999999999999999888888777777
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhcCCCCC
Q 000984 947 GGGFGASFFLLFAFYAASFYAGARLVEDGKATFSDVFKVFFSLTMTAIGISQSSSFSSDSNKAKSAAASIFAIIDRESKI 1026 (1198)
Q Consensus 947 ~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~~t~g~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~ 1026 (1198)
+....+...+..+..++++++|++++.+|.+++|.++++..++..+..|+..+......++.+..+.+|+.++++.+++.
T Consensus 240 ~~~~~~~~~~~~~~~~~v~~~g~~~v~~g~it~g~l~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~ri~~~~~~~~~~ 319 (585)
T TIGR01192 240 ALASGLNRMASTISMMCILVIGTVLVIKGELSVGEVIAFIGFANLLIGRLDQMSGFITQIFEARAKLEDFFDLEDSVFQR 319 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccc
Confidence 76667766777777788889999999999999999999999999999999999999999999999999999999876543
Q ss_pred CCCCCCCCcccCCcccEEEeeeeEECCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECC
Q 000984 1027 DPSDESGTILEDVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDG 1106 (1198)
Q Consensus 1027 ~~~~~~~~~~~~~~G~I~f~nVsf~Y~~~~~~~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG 1106 (1198)
+.... ....+...+.|+|+||+|+|+++ .++|+|+||+|++||++|||||||||||||+++|+|+|+|++|+|++||
T Consensus 320 ~~~~~-~~~~~~~~~~i~~~~v~~~y~~~--~~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g 396 (585)
T TIGR01192 320 EEPAD-APELPNVKGAVEFRHITFEFANS--SQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDG 396 (585)
T ss_pred cCCcc-CCCCCCCCCeEEEEEEEEECCCC--CccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCCCCCCEEEECC
Confidence 21111 11112235679999999999742 3599999999999999999999999999999999999999999999999
Q ss_pred cccCCCChHHHHhhcceeccccccccccHHHHHhcCCCCCCCHHHHHHHHHHcchHHHHHhcccccccee
Q 000984 1107 VEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQVRTSRL 1176 (1198)
Q Consensus 1107 ~dI~~i~l~~LR~~IsiV~Qdp~LF~gTIreNI~~g~~~~~tdeei~~Al~~A~l~dfI~~LP~g~dt~v 1176 (1198)
+|+++++.+++|+++++|||||++|++||+|||.++. ++++|+|+++|++.+++++++.+||+|+||.+
T Consensus 397 ~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~-~~~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~ 465 (585)
T TIGR01192 397 IDINTVTRESLRKSIATVFQDAGLFNRSIRENIRLGR-EGATDEEVYEAAKAAAAHDFILKRSNGYDTLV 465 (585)
T ss_pred EEhhhCCHHHHHhheEEEccCCccCcccHHHHHhcCC-CCCCHHHHHHHHHHhCcHHHHHhccccccchh
Confidence 9999999999999999999999999999999999985 47899999999999999999999999999975
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related. |
| >COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-54 Score=493.19 Aligned_cols=446 Identities=22% Similarity=0.262 Sum_probs=395.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000984 724 GTIAAMANGVILPIYGLLISSVIETFFKPPHELKKDSRFWALIYLALGAGSFLLSPAQSYFFAVAGNKLIQRIRSMCFEK 803 (1198)
Q Consensus 724 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~~l~~~ 803 (1198)
..++.++.+++.....+++...++..+.... ......+++.+++..+++.++.+.+......++.++..+||.+++++
T Consensus 5 ~~ll~~l~~i~~i~qa~llA~~l~~l~~~~~--~~~l~~~~~~l~~~~~lRa~l~~~~~~~~~~aa~~~~~~LR~~~l~~ 82 (559)
T COG4988 5 SALLAVLSGIAIIAQAALLADILTKLIEGQL--FQSLLPLLILLLIALVLRAFLAWLRERLGYRAAAKVRASLRQLVLDK 82 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555666666677777777776654321 22344556667777888999999999999999999999999999999
Q ss_pred HHhCcccccccCCCChhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 000984 804 VIHMEVSWFDEPEHSSGAIGARLSADAASVRALVGDALARIVQNISTAAAGLIIAFTASWQLALIILVMLPLIGVSGYTQ 883 (1198)
Q Consensus 804 ll~~p~~fFd~~~~~~G~i~~r~s~D~~~i~~~l~~~l~~~i~~~~~~i~~li~~~~~~~~l~l~~l~~~pl~~~~~~~~ 883 (1198)
+.+++..|-. ..|+|+..+.++..++.++.++...++.++.+.+..+..++.+++.+|.-++++++.+|++.++++++
T Consensus 83 l~~~gp~~~~--~~~~g~~atl~~egve~l~~Y~~ryLPq~~~~~ivp~~i~i~v~~~~w~aalIllit~PlIPlfMilv 160 (559)
T COG4988 83 LAKLGPAFIA--QKPAGSAATLALEGIEQLEPYYARYLPQMFLSAIVPLLILIAIFFFNWAAALILLITAPLIPLFMILV 160 (559)
T ss_pred HHhCChhhhc--CCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999 58999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHhchhHHHHHhcchHHHHHHHHHHhhhHHHHhHHHHHHHhhHHHHHHHHHHHHHHH
Q 000984 884 MKFMKGFSADAKMKYEEASQVANDAVGSIRTVASFCAEEKVMQLYKKKCEAPMKTGIRQGMVSGGGFGASFFLLFAFYAA 963 (1198)
Q Consensus 884 ~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 963 (1198)
....++.+++.-..+..+++++.|.++|+.|+|+|++.+...++..+..+++++..++..+..-....+..++.++..++
T Consensus 161 g~~a~~~s~~~~~~~~~ls~~FLD~LrGL~TLr~f~~~~~~~~~i~~~se~fR~~TM~vLriAflSs~vLeffa~lsiAl 240 (559)
T COG4988 161 GLAAKDASEKQFSALARLSGHFLDRLRGLETLRAFGRTEATEERIRKDSEDFRKATMSVLRIAFLSSAVLEFFAYLSIAL 240 (559)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHhcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999998888878888888888888888
Q ss_pred HHHHHHHHHhc-CCcCHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCcccCCccc
Q 000984 964 SFYAGARLVED-GKATFSDVFKVFFSLTMTAIGISQSSSFSSDSNKAKSAAASIFAIIDRESKIDPSDESGTILEDVKGE 1042 (1198)
Q Consensus 964 ~~~~g~~l~~~-g~~t~g~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~~~~~~G~ 1042 (1198)
+..+.+..... |.+++...+.++.....++.|+..+.+.++.-..+.++.+.++.+++.+.+..+.............+
T Consensus 241 vAv~~g~~ll~~G~ltl~~~l~~LiLAPEff~PlR~lGs~fH~~~~g~aa~d~i~~~l~~~~~~~~~~~~~~~~~~~~~e 320 (559)
T COG4988 241 VAVYIGFRLLGEGDLTLFAGLFVLILAPEFFQPLRDLGSFFHAAAAGEAAADKLFTLLESPVATPGSGEKAEVANEPPIE 320 (559)
T ss_pred HHHHHHHHHHccCCccHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhcCCCCCCCCccccccccCCCce
Confidence 77766666666 89999999999999999999999999999999999999999999999876643322111111112345
Q ss_pred EEEeeeeEECCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHhhcc
Q 000984 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMG 1122 (1198)
Q Consensus 1043 I~f~nVsf~Y~~~~~~~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~~i~l~~LR~~Is 1122 (1198)
|+++|++|+||++ +++++|+||+++||+++||||+||||||||+++|+||.+|++|+|.+||+|+++++.++||++++
T Consensus 321 i~~~~l~~~y~~g--~~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~~~G~I~vng~~l~~l~~~~~~k~i~ 398 (559)
T COG4988 321 ISLENLSFRYPDG--KPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQIS 398 (559)
T ss_pred eeecceEEecCCC--CcccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCccccccCHHHHHhHee
Confidence 6677999999864 37999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeccccccccccHHHHHhcCCCCCCCHHHHHHHHHHcchHHHHHhccccccceee
Q 000984 1123 LVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQVRTSRLL 1177 (1198)
Q Consensus 1123 iV~Qdp~LF~gTIreNI~~g~~~~~tdeei~~Al~~A~l~dfI~~LP~g~dt~v~ 1177 (1198)
+|||+|+||+|||||||+++++ ++|||||++|++.+++.||+.. |+|+||.+-
T Consensus 399 ~v~Q~p~lf~gTireNi~l~~~-~~s~e~i~~al~~a~l~~~v~~-p~GLdt~ig 451 (559)
T COG4988 399 WVSQNPYLFAGTIRENILLARP-DASDEEIIAALDQAGLLEFVPK-PDGLDTVIG 451 (559)
T ss_pred eeCCCCccccccHHHHhhccCC-cCCHHHHHHHHHHhcHHHhhcC-CCcccchhc
Confidence 9999999999999999999964 7999999999999999999999 999999873
|
|
| >PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-54 Score=533.96 Aligned_cols=437 Identities=21% Similarity=0.342 Sum_probs=377.6
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccc
Q 000984 732 GVILPIYGLLISSVIETFFKPPHELKKDSRFWALIYLALGAGSFLLSPAQSYFFAVAGNKLIQRIRSMCFEKVIHMEVSW 811 (1198)
Q Consensus 732 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~~l~~~ll~~p~~f 811 (1198)
.++....+++++.++|........ ......|+++++++.++..++.+++.++.+..+.+...++|.++|++++++|++|
T Consensus 8 ~~~~~~~p~~~~~iid~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~ 86 (569)
T PRK10789 8 AMLQLIPPKVVGIIVDGVTEQHMT-TGQILMWIGTMVLIAVVVYLLRYVWRVLLFGASYQLAVELREDFYRQLSRQHPEF 86 (569)
T ss_pred HHHHHHHHHHHHHHHHHhccCCcc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHH
Confidence 334455677778888865432111 1122334445555556677788888889999999999999999999999999999
Q ss_pred cccCCCChhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 000984 812 FDEPEHSSGAIGARLSADAASVRALVGDALARIVQNISTAAAGLIIA-FTASWQLALIILVMLPLIGVSGYTQMKFMKGF 890 (1198)
Q Consensus 812 Fd~~~~~~G~i~~r~s~D~~~i~~~l~~~l~~~i~~~~~~i~~li~~-~~~~~~l~l~~l~~~pl~~~~~~~~~~~~~~~ 890 (1198)
|+ ++++|++++|+++|++.++..+...+..++..++.+++.++++ ++++|++++++++++|+.+++.+.+.++.++.
T Consensus 87 ~~--~~~~g~i~srl~~Dv~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~li~l~~~~l~~~~~~~~~~~~~~~ 164 (569)
T PRK10789 87 YL--RHRTGDLMARATNDVDRVVFAAGEGVLTLVDSLVMGCAVLIVMSTQISWQLTLLALLPMPVMAIMIKRYGDQLHER 164 (569)
T ss_pred Hc--CCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99 5889999999999999999888888888888777766666655 58999999999999999999888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHhchhHHHHHhcchHHHHHHHHHHhhhHHHHhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 000984 891 SADAKMKYEEASQVANDAVGSIRTVASFCAEEKVMQLYKKKCEAPMKTGIRQGMVSGGGFGASFFLLFAFYAASFYAGAR 970 (1198)
Q Consensus 891 ~~~~~~~~~~~~~~~~E~l~gi~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 970 (1198)
.++.++..++..+.+.|+++|+++||+|+.|+.+.++|.+..++..+...+.....+........+..+..++++++|++
T Consensus 165 ~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~ 244 (569)
T PRK10789 165 FKLAQAAFSSLNDRTQESLTSIRMIKAFGLEDRQSALFAADAEDTGKKNMRVARIDARFDPTIYIAIGMANLLAIGGGSW 244 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888999999999999999999999999999999999999998888888877777676666666777788899999
Q ss_pred HHhcCCcCHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCcccCCcccEEEeeeeE
Q 000984 971 LVEDGKATFSDVFKVFFSLTMTAIGISQSSSFSSDSNKAKSAAASIFAIIDRESKIDPSDESGTILEDVKGEIELHHVSF 1050 (1198)
Q Consensus 971 l~~~g~~t~g~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~~~~~~G~I~f~nVsf 1050 (1198)
++.+|.+|+|.++++..+...+..|+..+......++.+..+.+|+.++++.+++.+... ...+...|+|+|+||+|
T Consensus 245 lv~~g~lt~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~ll~~~~~~~~~~---~~~~~~~~~I~~~~v~~ 321 (569)
T PRK10789 245 MVVNGSLTLGQLTSFVMYLGLMIWPMLALAWMFNIVERGSAAYSRIRAMLAEAPVVKDGS---EPVPEGRGELDVNIRQF 321 (569)
T ss_pred HHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCC---CCCCCCCCcEEEEEEEE
Confidence 999999999999999999999999999999999999999999999999998765432111 11122356899999999
Q ss_pred ECCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHhhcceecccccc
Q 000984 1051 KYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMGLVSQEPVL 1130 (1198)
Q Consensus 1051 ~Y~~~~~~~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~~i~l~~LR~~IsiV~Qdp~L 1130 (1198)
+|+.. +.++|+|+||+|+|||++|||||||||||||+++|+|+|+|++|+|++||+|+++++.+++|++|++|||||+|
T Consensus 322 ~y~~~-~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~l 400 (569)
T PRK10789 322 TYPQT-DHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRSRLAVVSQTPFL 400 (569)
T ss_pred ECCCC-CCccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEHhhCCHHHHHhheEEEccCCee
Confidence 99753 34799999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccHHHHHhcCCCCCCCHHHHHHHHHHcchHHHHHhcccccccee
Q 000984 1131 FNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQVRTSRL 1176 (1198)
Q Consensus 1131 F~gTIreNI~~g~~~~~tdeei~~Al~~A~l~dfI~~LP~g~dt~v 1176 (1198)
|+|||||||++|+ ++++|+++++|++.++++++|.+||+|+||.+
T Consensus 401 f~~ti~~Ni~~~~-~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~ 445 (569)
T PRK10789 401 FSDTVANNIALGR-PDATQQEIEHVARLASVHDDILRLPQGYDTEV 445 (569)
T ss_pred ccccHHHHHhcCC-CCCCHHHHHHHHHHcCCHHHHHhCcCccccee
Confidence 9999999999985 47899999999999999999999999999976
|
|
| >PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-54 Score=533.19 Aligned_cols=459 Identities=22% Similarity=0.276 Sum_probs=388.2
Q ss_pred hHhhhhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000984 707 TRRLAYLNKPEIPVILAGTIAAMANGVILPIYGLLISSVIETFFKPPHELKKDSRFWALIYLALGAGSFLLSPAQSYFFA 786 (1198)
Q Consensus 707 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 (1198)
++++..+.++++..+.+.+++.++..++....++++..++|...... ......++++++.++..+..++..++..
T Consensus 7 ~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~iid~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (588)
T PRK13657 7 YARVLQYLGAEKRLGILLAVANVLLAAATFAEPILFGRIIDAISGKG-----DIFPLLAAWAGFGLFNIIAGVLVARHAD 81 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc-----cHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555666777777777777777777888888888888764321 1112223333334444444555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHhCcccccccCCCChhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q 000984 787 VAGNKLIQRIRSMCFEKVIHMEVSWFDEPEHSSGAIGARLSADAASVRALVGDALARIVQNISTAAAGLIIAFTASWQLA 866 (1198)
Q Consensus 787 ~~~~~~~~~Lr~~l~~~ll~~p~~fFd~~~~~~G~i~~r~s~D~~~i~~~l~~~l~~~i~~~~~~i~~li~~~~~~~~l~ 866 (1198)
....+...+++.++|+|++++|..+|+ +.+.|++++|+++|++.+...+...+..++..++.+++.++++++++|+++
T Consensus 82 ~~~~~~~~~l~~~l~~~l~~~~~~~~~--~~~~g~~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 159 (588)
T PRK13657 82 RLAHRRRLAVLTEYFERIIQLPLAWHS--QRGSGRALHTLLRGTDALFGLWLEFMREHLATLVALVVLLPLALFMNWRLS 159 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCHHHHC--cCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566666667777999999999999999 588999999999999999998888888888888888888888999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhchhHHHHHhcchHHHHHHHHHHhhhHHHHhHHHHHHH
Q 000984 867 LIILVMLPLIGVSGYTQMKFMKGFSADAKMKYEEASQVANDAVGSIRTVASFCAEEKVMQLYKKKCEAPMKTGIRQGMVS 946 (1198)
Q Consensus 867 l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 946 (1198)
+++++++|+.+++.++..++.++..++.++..++..+.+.|.++|+++||+|+.++.+.++|.+..++..+...+.....
T Consensus 160 l~~l~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (588)
T PRK13657 160 LVLVVLGIVYTLITTLVMRKTKDGQAAVEEHYHDLFAHVSDAIGNVSVVQSYNRIEAETQALRDIADNLLAAQMPVLSWW 239 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999988888888888888888888888999999999999999999999999999999999999998888877777
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhcCCCCC
Q 000984 947 GGGFGASFFLLFAFYAASFYAGARLVEDGKATFSDVFKVFFSLTMTAIGISQSSSFSSDSNKAKSAAASIFAIIDRESKI 1026 (1198)
Q Consensus 947 ~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~~t~g~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~ 1026 (1198)
.....+..++..+..++++++|++++.+|.+|+|+++++..+...+..|+..+......+..+..+.+|+.++++.+++.
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~~~a~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~~~~~ 319 (588)
T PRK13657 240 ALASVLNRAASTITMLAILVLGAALVQKGQLRVGEVVAFVGFATLLIGRLDQVVAFINQVFMAAPKLEEFFEVEDAVPDV 319 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccc
Confidence 77777777777778888899999999999999999999999999999999999999999999999999999998865542
Q ss_pred CCCCCCCCcccCCcccEEEeeeeEECCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECC
Q 000984 1027 DPSDESGTILEDVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDG 1106 (1198)
Q Consensus 1027 ~~~~~~~~~~~~~~G~I~f~nVsf~Y~~~~~~~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG 1106 (1198)
+.... ....+...+.|+|+||+|+|+++ +++|+|+||+|+|||++||||+||||||||+++|+|+|+|++|+|++||
T Consensus 320 ~~~~~-~~~~~~~~~~I~~~~vsf~y~~~--~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~G~I~i~g 396 (588)
T PRK13657 320 RDPPG-AIDLGRVKGAVEFDDVSFSYDNS--RQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDG 396 (588)
T ss_pred CCCCC-CCCcCCCCCeEEEEEEEEEeCCC--CceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECC
Confidence 21111 11112234679999999999743 3699999999999999999999999999999999999999999999999
Q ss_pred cccCCCChHHHHhhcceeccccccccccHHHHHhcCCCCCCCHHHHHHHHHHcchHHHHHhcccccccee
Q 000984 1107 VEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQVRTSRL 1176 (1198)
Q Consensus 1107 ~dI~~i~l~~LR~~IsiV~Qdp~LF~gTIreNI~~g~~~~~tdeei~~Al~~A~l~dfI~~LP~g~dt~v 1176 (1198)
+|+++++.+++|++|++|||||+||+|||||||.+++ ++++|+|+++|++.++++++|.+||+|+||.+
T Consensus 397 ~~i~~~~~~~~r~~i~~v~Q~~~lf~~Ti~~Ni~~~~-~~~~d~~i~~al~~~~l~~~i~~lp~gldt~i 465 (588)
T PRK13657 397 TDIRTVTRASLRRNIAVVFQDAGLFNRSIEDNIRVGR-PDATDEEMRAAAERAQAHDFIERKPDGYDTVV 465 (588)
T ss_pred EEhhhCCHHHHHhheEEEecCcccccccHHHHHhcCC-CCCCHHHHHHHHHHhCHHHHHHhCcccccchh
Confidence 9999999999999999999999999999999999995 47899999999999999999999999999975
|
|
| >KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-54 Score=486.01 Aligned_cols=444 Identities=22% Similarity=0.305 Sum_probs=367.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhc--CCCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000984 724 GTIAAMANGVILPIYGLLISSVIETFF--KPPHELKKDSRFWALIYLALGAGSFLLSPAQSYFFAVAGNKLIQRIRSMCF 801 (1198)
Q Consensus 724 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~~l~ 801 (1198)
.+++.+.+-.+....+.++...++..- .+.+.......-.+..|.+..+...+|..++.+.+.++.+++.++.-.++|
T Consensus 35 ~l~~l~~aK~l~v~vp~~~~~~id~l~~~~~~~a~~~~~~~~~~~y~iar~~s~~F~el~~~vfa~v~q~~iR~~~~~vf 114 (591)
T KOG0057|consen 35 ALGLLLGAKILNVQVPFIFKLIIDGLNDADGNPAVLSTITALLAGYGIARLGSSVFNELRNFVFAKVAQRVIRDSSSDVF 114 (591)
T ss_pred HHHHHHhhhHhheehHHHHHHHHhhhhhcccCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333345566667777777777652 111111111223456677788889999999999999999999999999999
Q ss_pred HHHHhCcccccccCCCChhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhhHHHHHHHHHHHHHHHHHH
Q 000984 802 EKVIHMEVSWFDEPEHSSGAIGARLSADAASVRALVGDALARIVQNISTAAAGLI-IAFTASWQLALIILVMLPLIGVSG 880 (1198)
Q Consensus 802 ~~ll~~p~~fFd~~~~~~G~i~~r~s~D~~~i~~~l~~~l~~~i~~~~~~i~~li-~~~~~~~~l~l~~l~~~pl~~~~~ 880 (1198)
+++++++++||. +..+|.|.+++.+-...|..++...+..++..++-+..... +-.-..+..+++.+..+..+..+.
T Consensus 115 ~~~~~ld~~~~~--~~~tG~l~~~idRgsraI~~vl~~~V~~i~p~~~~i~~v~~~l~~~~Ga~~~li~~~~v~~Y~a~T 192 (591)
T KOG0057|consen 115 RHLMSLDLSFFL--SRGTGALNRIIDRGSRAISFVLSAMVFNIIPTLFEIALVSGILYYKFGAAFALITLGTVGAYAAFT 192 (591)
T ss_pred HHHHhhhHHhhc--CCCcchHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHhheeE
Confidence 999999999999 47899999999999999999999888888888776655553 334466777777777777777777
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHhchhHHHHHhcchHHHHHHHHHHhhhHHHHhHHHHHHHhhHHHHHHHHHHHH
Q 000984 881 YTQMKFMKGFSADAKMKYEEASQVANDAVGSIRTVASFCAEEKVMQLYKKKCEAPMKTGIRQGMVSGGGFGASFFLLFAF 960 (1198)
Q Consensus 881 ~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 960 (1198)
+...++..+..++...+...++..+.|++.|..+||+||.|+++.++|+..+.++.+...+.....+...-....+....
T Consensus 193 i~~t~~Rn~fR~~~N~Adn~as~~~~dsL~Nye~VKsfNnE~~Ea~~y~~~l~~~~~~~~~~~~sl~~lnfgQ~~iFsv~ 272 (591)
T KOG0057|consen 193 IVVTRWRNRFRKAMNNADNSASRRAYDSLINYEIVKSFNNEEYEASRYDGSLKTYERAGLKYSSSLAFLNFGQKAIFSVA 272 (591)
T ss_pred EeehhHHHHHHHHHHhhhhHHHHHHHHHHhhHHHHHHcccHHHHHHHHHHHHHHHHHhhhhHHhHHHHHHHHHHHHHHHH
Confidence 77777777778888889999999999999999999999999999999999999999988877766665555555555566
Q ss_pred HHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCcccCCc
Q 000984 961 YAASFYAGARLVEDGKATFSDVFKVFFSLTMTAIGISQSSSFSSDSNKAKSAAASIFAIIDRESKIDPSDESGTILEDVK 1040 (1198)
Q Consensus 961 ~~~~~~~g~~l~~~g~~t~g~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~~~~~~ 1040 (1198)
.+.+.++|..-+.+|.+|+|+++....++.++..|+..+.....++.++..-+..++...+....+... ..+....+
T Consensus 273 ~~~im~l~~~gi~~~~mtvgdlv~~n~l~~qL~~~l~~Lg~vyr~~~q~l~Dm~~~~~l~~~~~~i~~~---~~~i~~~~ 349 (591)
T KOG0057|consen 273 LTFIMVLGSNGIAAGKMTVGDLVMVNSLLFQLSLPLNFLGSVYRELRQALTDMRTLFILLEVDEDIQEA---ALPIELFG 349 (591)
T ss_pred HHHHHHHHhhhhhhccccccchhhHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHhhhhhhhhhhhc---cCCcccCC
Confidence 667777787778899999999999999999999999999999999888888777777654433322111 11223346
Q ss_pred ccEEEeeeeEECCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHhh
Q 000984 1041 GEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQ 1120 (1198)
Q Consensus 1041 G~I~f~nVsf~Y~~~~~~~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~~i~l~~LR~~ 1120 (1198)
|.|+|+||+|+|+ |+++||+|+||+|++||||||||++||||||++++|+||+| ++|+|+|||+||++++++++|+.
T Consensus 350 ~~I~F~dV~f~y~--~k~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d-~sG~I~IdG~dik~~~~~SlR~~ 426 (591)
T KOG0057|consen 350 GSIEFDDVHFSYG--PKRKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFD-YSGSILIDGQDIKEVSLESLRQS 426 (591)
T ss_pred CcEEEEeeEEEeC--CCCceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhc-cCCcEEECCeeHhhhChHHhhhh
Confidence 7899999999997 35569999999999999999999999999999999999999 99999999999999999999999
Q ss_pred cceeccccccccccHHHHHhcCCCCCCCHHHHHHHHHHcchHHHHHhcccccccee
Q 000984 1121 MGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQVRTSRL 1176 (1198)
Q Consensus 1121 IsiV~Qdp~LF~gTIreNI~~g~~~~~tdeei~~Al~~A~l~dfI~~LP~g~dt~v 1176 (1198)
||+||||..||++||.+||.||++ .+++||+.++||+|++||.|++||+||+|.|
T Consensus 427 Ig~VPQd~~LFndTIl~NI~YGn~-sas~eeV~e~~k~a~~hd~i~~l~~GY~T~V 481 (591)
T KOG0057|consen 427 IGVVPQDSVLFNDTILYNIKYGNP-SASDEEVVEACKRAGLHDVISRLPDGYQTLV 481 (591)
T ss_pred eeEeCCcccccchhHHHHhhcCCC-CcCHHHHHHHHHHcCcHHHHHhccccchhhH
Confidence 999999999999999999999964 8999999999999999999999999999987
|
|
| >COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-53 Score=474.15 Aligned_cols=451 Identities=21% Similarity=0.195 Sum_probs=360.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhhhhHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000984 717 EIPVILAGTIAAMANGVILPIYGLLISSVIETFFKPPHELKKDSRFWA--LIYLALGAGSFLLSPAQSYFFAVAGNKLIQ 794 (1198)
Q Consensus 717 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 794 (1198)
+++.+.++++++++..+.......+-++++......+.. ....+++ ...=++++.+.+..|...+..|.+..++..
T Consensus 14 ~~~~l~Lgi~l~~~t~lasigLl~lSGwfisasAiag~~--~~f~~~~p~a~VR~~aI~Rt~~RY~ERlvsH~AtfrvL~ 91 (573)
T COG4987 14 HKFGLLLGIVLAILTLLASIGLLTLSGWFISASAIAGLA--YIFNVMLPSAGVRGLAILRTAARYVERLVSHDATFRVLS 91 (573)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhccHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 566666666666655444443333344444322111110 1111111 112246788889999999999999999999
Q ss_pred HHHHHHHHHHHhCcccccccCCCChhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 000984 795 RIRSMCFEKVIHMEVSWFDEPEHSSGAIGARLSADAASVRALVGDALARIVQNISTAAAGLIIAFTASWQLALIILVMLP 874 (1198)
Q Consensus 795 ~Lr~~l~~~ll~~p~~fFd~~~~~~G~i~~r~s~D~~~i~~~l~~~l~~~i~~~~~~i~~li~~~~~~~~l~l~~l~~~p 874 (1198)
+||.++|+++...+..-.. +.++||++||+..|++.+|+.+-..+.+.+..++..++..+.+.+++|.+++.+...+.
T Consensus 92 ~lRv~~f~kl~p~sp~~~~--r~r~gdLL~RLvaDVd~Ld~lyLRvi~P~~~a~~~~~~~~i~L~f~~~~~Alll~~~ll 169 (573)
T COG4987 92 ALRVRLFEKLEPLSPALLL--RYRSGDLLNRLVADVDALDNLYLRVIAPAVVALVLIAVVTIGLSFFSIPLALLLGLILL 169 (573)
T ss_pred HHHHHHHHhhccCChHHHH--hcChHhHHHHHHhhHHHHhhHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 9999999999999998888 47899999999999999999999999999999999888888888999999887765554
Q ss_pred HH-HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhchhHHHHHhcchHHHHHHHHHHhhhHHHHhHHHHHHHhhHHHHH
Q 000984 875 LI-GVSGYTQMKFMKGFSADAKMKYEEASQVANDAVGSIRTVASFCAEEKVMQLYKKKCEAPMKTGIRQGMVSGGGFGAS 953 (1198)
Q Consensus 875 l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 953 (1198)
+. +++...+.++-++..+..+...+...+++.|.+.|....+.||+++.+.+.+.+..+.+.+...+...+........
T Consensus 170 ~~lli~P~~~~~~~~~~~~~l~~~r~~lr~~~td~v~G~~EL~~~g~~~~~~~~l~~~e~~~~~~q~k~~~~~~~~~a~~ 249 (573)
T COG4987 170 LLLLIIPTLFYRAGRKFGAHLAQGRAALRSQFTDWVQGQAELLIFGAEDAYRTALEATEASWLKAQRKQARFTGLSDAIL 249 (573)
T ss_pred HHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44 45566777777888888899999999999999999999999999999999999999999999888888888777777
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHh-hhhhHHHHHHHHHHHHHHHhcCCCCCCCCCCC
Q 000984 954 FFLLFAFYAASFYAGARLVEDGKATFSDVFKVFFSLTMTAIGISQSS-SFSSDSNKAKSAAASIFAIIDRESKIDPSDES 1032 (1198)
Q Consensus 954 ~~~~~~~~~~~~~~g~~l~~~g~~t~g~l~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~ 1032 (1198)
.++..+..+..+.+.+..+..|..+......+.+.......++.-+. ..+.+..+...|+.|+.++.+.+++...+. .
T Consensus 250 ~l~~g~~v~~~l~w~a~~~~~G~~~~~~aa~~ll~~f~~~eaf~~L~~~A~~~lgq~~~Sa~Rl~~i~~q~~e~~~~~-~ 328 (573)
T COG4987 250 LLIAGLLVIGLLLWMAAQVGAGALAQPGAALALLVIFAALEAFEPLAPGAFQHLGQVIASARRLNDILDQKPEVTFPD-E 328 (573)
T ss_pred HHHHHHHHHHHHHHHHhcCcCCCcchhHHHHHHHHHHHHHHHHhhhcchhHHHhhHHHHHHHHHhhhccCCcccCCCc-c
Confidence 77766666644444444555666653333333333334444444444 666788899999999999999888765431 1
Q ss_pred CCcccCCcccEEEeeeeEECCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCC
Q 000984 1033 GTILEDVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKL 1112 (1198)
Q Consensus 1033 ~~~~~~~~G~I~f~nVsf~Y~~~~~~~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~~i 1112 (1198)
..+ .... .++++||||+||+. +++||+|+||++++||||||+|||||||||++++|.|-|+|++|+|.++|.|++.+
T Consensus 329 ~~~-~~~~-~l~~~~vsF~y~~~-~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~~~~G~i~~~g~~~~~l 405 (573)
T COG4987 329 QTA-TTGQ-ALELRNVSFTYPGQ-QTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGSITLNGVEIASL 405 (573)
T ss_pred ccC-Cccc-eeeeccceeecCCC-ccchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhccCCCCCeeeECCcChhhC
Confidence 111 1111 79999999999864 55799999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHhhcceeccccccccccHHHHHhcCCCCCCCHHHHHHHHHHcchHHHHHhcccccccee
Q 000984 1113 QLKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQVRTSRL 1176 (1198)
Q Consensus 1113 ~l~~LR~~IsiV~Qdp~LF~gTIreNI~~g~~~~~tdeei~~Al~~A~l~dfI~~LP~g~dt~v 1176 (1198)
+.+++|+.|++++|.++||+||+||||+++++ ++||||+|+|++++++++++++.|+||+|.+
T Consensus 406 ~~~~~~e~i~vl~Qr~hlF~~Tlr~NL~lA~~-~AsDEel~~aL~qvgL~~l~~~~p~gl~t~l 468 (573)
T COG4987 406 DEQALRETISVLTQRVHLFSGTLRDNLRLANP-DASDEELWAALQQVGLEKLLESAPDGLNTWL 468 (573)
T ss_pred ChhhHHHHHhhhccchHHHHHHHHHHHhhcCC-CCCHHHHHHHHHHcCHHHHHHhChhhhhchh
Confidence 99999999999999999999999999999964 8999999999999999999999999999976
|
|
| >TIGR01194 cyc_pep_trnsptr cyclic peptide transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-53 Score=517.33 Aligned_cols=452 Identities=15% Similarity=0.120 Sum_probs=370.5
Q ss_pred hHhhhhhcC-ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000984 707 TRRLAYLNK-PEIPVILAGTIAAMANGVILPIYGLLISSVIETFFKPPHELKKDSRFWALIYLALGAGSFLLSPAQSYFF 785 (1198)
Q Consensus 707 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 (1198)
.++++.+.+ ++++.++++++++++.++.....+++++.+++...... . .....++++.++..++.++..++.
T Consensus 5 ~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~-----~--~~~~~~~~~~~~~~~~~~~~~~~~ 77 (555)
T TIGR01194 5 IGEILALLRSPFPAITAFSIALGLAGGLAIIALLASINNAIHEENFLG-----Q--GSLFSFGGLCLLALLFRIGADIFP 77 (555)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccc-----c--hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666667 88888888888888888877777777777765321100 0 011223344556667888899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCcccccccCCCChhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 000984 786 AVAGNKLIQRIRSMCFEKVIHMEVSWFDEPEHSSGAIGARLSADAASVRALVGDALARIVQNISTAAAGLIIAFTASWQL 865 (1198)
Q Consensus 786 ~~~~~~~~~~Lr~~l~~~ll~~p~~fFd~~~~~~G~i~~r~s~D~~~i~~~l~~~l~~~i~~~~~~i~~li~~~~~~~~l 865 (1198)
+..+.+...++|.++|+|++++|++||+ ++++|++++|+++|++.++.++.. +..++..++.+++.++++++++|.+
T Consensus 78 ~~~~~~~~~~lR~~l~~~l~~~~~~~~~--~~~~G~l~srl~~Dv~~i~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~L 154 (555)
T TIGR01194 78 AYAGMHIIANLRIALCEKILGAPIEEID--RRGAHNLIPLLTHDIDQINAFLFI-FPPIAIALAIFFFCIAYLAYLSVPM 154 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCHHHHH--hcCcchhhHHHhhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 9999999999999999999999999999 589999999999999999999864 7778888888888999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhchhHHHHHhcchH--HHHHHHHHHhhhHHHHhHHHH
Q 000984 866 ALIILVMLPLIGVSGYTQMKFMKGFSADAKMKYEEASQVANDAVGSIRTVASFCAEE--KVMQLYKKKCEAPMKTGIRQG 943 (1198)
Q Consensus 866 ~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIraf~~e~--~~~~~~~~~~~~~~~~~~~~~ 943 (1198)
++++++++|+.+++..+..++.++..++.++..++.++.+.|.+.|+++||+|+.++ .+.++|.+..++..+...+..
T Consensus 155 ~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (555)
T TIGR01194 155 FAITISAIIIGTAAQLLAFMGGFKFFHAARDEEDAFNEHTHAIAFGAKELKIHGIRRLSFAHGAIQESANNIADLHIIEI 234 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHhcCHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 999999999988888877777777788888888999999999999999999999954 567888888888887776665
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhcCC
Q 000984 944 MVSGGGFGASFFLLFAFYAASFYAGARLVEDGKATFSDVFKVFFSLTMTAIGISQSSSFSSDSNKAKSAAASIFAIIDRE 1023 (1198)
Q Consensus 944 ~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~~t~g~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~~~ 1023 (1198)
.......++..++..+...+.++++++. |.+++|.++++..++..+..|+..+......++++..+.+|+.++++.+
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~t~g~l~a~~~~~~~l~~pi~~l~~~~~~~~~a~~s~~ri~~ll~~~ 311 (555)
T TIGR01194 235 LIFIAAENFGQLLFFLLIGCALFAAAMF---ASIDAAAISAFVLALLYIKGPLEMLVSALPILAQAQIACQRLADFGERF 311 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 5554444444444444444445555443 7899999999999999999999999999999999999999999997632
Q ss_pred CCCCCC---CCCCC----cccCCcccEEEeeeeEECCCCC--CccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcc
Q 000984 1024 SKIDPS---DESGT----ILEDVKGEIELHHVSFKYPSRP--DVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRF 1094 (1198)
Q Consensus 1024 ~~~~~~---~~~~~----~~~~~~G~I~f~nVsf~Y~~~~--~~~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ 1094 (1198)
.+.++. ++... ++....++|+|+||+|+|++.+ ++++|+|+||+|++||++|||||||||||||+++|.|+
T Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~~~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~ 391 (555)
T TIGR01194 312 NEPEPELELSDADNVLLLAHDKSVDSIELKDVHMNPKAPEGSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGL 391 (555)
T ss_pred ccccccccccccccccccccCCCCceEEEEEEEEEeCCCCCCcCceeccceEEEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 211110 10000 1112346899999999997431 23699999999999999999999999999999999999
Q ss_pred cCCCCCeEEECCcccCCCChHHHHhhcceeccccccccccHHHHHhcCCCCCCCHHHHHHHHHHcchHHHHHhccccccc
Q 000984 1095 YDPDAGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQVRTS 1174 (1198)
Q Consensus 1095 ydp~~G~I~IDG~dI~~i~l~~LR~~IsiV~Qdp~LF~gTIreNI~~g~~~~~tdeei~~Al~~A~l~dfI~~LP~g~dt 1174 (1198)
|+|++|+|++||+|+++++.+++|+++++|+|||+||++|+++|+ . +++++++++++++.+++++++++||+||||
T Consensus 392 ~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~ti~~n~--~--~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t 467 (555)
T TIGR01194 392 YIPQEGEILLDGAAVSADSRDDYRDLFSAIFADFHLFDDLIGPDE--G--EHASLDNAQQYLQRLEIADKVKIEDGGFST 467 (555)
T ss_pred CCCCCcEEEECCEECCCCCHHHHHhhCcEEccChhhhhhhhhccc--c--cchhHHHHHHHHHHcCCchhhcccccccCC
Confidence 999999999999999999999999999999999999999999996 2 368999999999999999999999999999
Q ss_pred e
Q 000984 1175 R 1175 (1198)
Q Consensus 1175 ~ 1175 (1198)
.
T Consensus 468 ~ 468 (555)
T TIGR01194 468 T 468 (555)
T ss_pred c
Confidence 5
|
This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake. |
| >TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-52 Score=511.27 Aligned_cols=445 Identities=16% Similarity=0.197 Sum_probs=377.4
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000984 716 PEIPVILAGTIAAMANGVILPIYGLLISSVIETFFKPPHELKKDSRFWALIYLALGAGSFLLSPAQSYFFAVAGNKLIQR 795 (1198)
Q Consensus 716 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 795 (1198)
++++.++..+++.++..++....++++..++|....... ......+.++++++.++..++.+++.++....+.++..+
T Consensus 3 ~~k~~~~~~~~~~~~~~~~~l~~p~~~~~iid~~~~~~~--~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (544)
T TIGR01842 3 KNKSTFIIVGLFSFVINILMLAPPLYMLQVYDRVLTSGS--VPTLLMLTVLALGLYLFLGLLDALRSFVLVRIGEKLDGA 80 (544)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCc--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666677777777777888889999986653211 112233444555566677788899999999999999999
Q ss_pred HHHHHHHHHHhCcccccccCCCChhhHHHHHHhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 000984 796 IRSMCFEKVIHMEVSWFDEPEHSSGAIGARLSADAASVRALVGD-ALARIVQNISTAAAGLIIAFTASWQLALIILVMLP 874 (1198)
Q Consensus 796 Lr~~l~~~ll~~p~~fFd~~~~~~G~i~~r~s~D~~~i~~~l~~-~l~~~i~~~~~~i~~li~~~~~~~~l~l~~l~~~p 874 (1198)
+|.++|+|++++|+.. .|...+++++|++.+++.+.. .+..++..++.++ .++++++++|++++++++.+|
T Consensus 81 lr~~~~~~ll~~~~~~-------~~~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~l~li~l~~~~ 152 (544)
T TIGR01842 81 LNQPIFAASFSATLRR-------GKIDGLQALRDLDQLRQFLTGPGLFAFFDAPWMPI-YLLVCFLLHPWIGILALGGAV 152 (544)
T ss_pred HHHHHHHHHhcCcccC-------ccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-HHHHHHHHhhHHHHHHHHHHH
Confidence 9999999999999843 256788999999999998877 4555555555444 446788999999999998888
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhchhHHHHHhcchHHHHHHHHHHhhhHHHHhHHHHHHHhhHHHHHH
Q 000984 875 LIGVSGYTQMKFMKGFSADAKMKYEEASQVANDAVGSIRTVASFCAEEKVMQLYKKKCEAPMKTGIRQGMVSGGGFGASF 954 (1198)
Q Consensus 875 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 954 (1198)
+++++.++..++.++..++.++..++..+.+.|+++|+++||+|+.|+.+.++|.+..++..+...+.....+....+..
T Consensus 153 l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (544)
T TIGR01842 153 VLVGLALLNNRATKKPLKEATEASIRANNLADSALRNAEVIEAMGMMGNLTKRWGRFHSKYLSAQSAASDRAGMLSNLSK 232 (544)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHhcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88877777778878778888888889999999999999999999999999999999999998888888777777777777
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhcCCCCCCCCCCCCC
Q 000984 955 FLLFAFYAASFYAGARLVEDGKATFSDVFKVFFSLTMTAIGISQSSSFSSDSNKAKSAAASIFAIIDRESKIDPSDESGT 1034 (1198)
Q Consensus 955 ~~~~~~~~~~~~~g~~l~~~g~~t~g~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~ 1034 (1198)
.+..+..++++++|++++.+|.+|+|+++++..+...+..|+..+......++.+..+.+|+.++++.+++.+.. .
T Consensus 233 ~~~~~~~~~~~~~g~~l~~~g~it~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~----~ 308 (544)
T TIGR01842 233 YFRIVLQSLVLGLGAYLAIDGEITPGMMIAGSILVGRALAPIDGAIGGWKQFSGARQAYKRLNELLANYPSRDPA----M 308 (544)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccCC----C
Confidence 777777788889999999999999999999999999999999999999999999999999999999876543211 1
Q ss_pred cccCCcccEEEeeeeEECCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCCh
Q 000984 1035 ILEDVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQL 1114 (1198)
Q Consensus 1035 ~~~~~~G~I~f~nVsf~Y~~~~~~~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~~i~l 1114 (1198)
..+...+.|+|+||+|+|+++ +.++|+|+||+|+|||++||||+||||||||+++|+|+|+|++|+|.+||+|+++++.
T Consensus 309 ~~~~~~~~i~~~~v~~~y~~~-~~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~i~~~~~ 387 (544)
T TIGR01842 309 PLPEPEGHLSVENVTIVPPGG-KKPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDR 387 (544)
T ss_pred CCCCCCCeEEEEEEEEEcCCC-CccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEehhhCCH
Confidence 112234679999999999743 3479999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcceeccccccccccHHHHHhcCCCCCCCHHHHHHHHHHcchHHHHHhcccccccee
Q 000984 1115 KWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQVRTSRL 1176 (1198)
Q Consensus 1115 ~~LR~~IsiV~Qdp~LF~gTIreNI~~g~~~~~tdeei~~Al~~A~l~dfI~~LP~g~dt~v 1176 (1198)
+++|+++++|||||++|++||||||++++ ++++++++++|++.+++++++++||+|+||.+
T Consensus 388 ~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~-~~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~ 448 (544)
T TIGR01842 388 ETFGKHIGYLPQDVELFPGTVAENIARFG-ENADPEKIIEAAKLAGVHELILRLPDGYDTVI 448 (544)
T ss_pred HHHhhheEEecCCcccccccHHHHHhccC-CCCCHHHHHHHHHHhChHHHHHhCcccccccc
Confidence 99999999999999999999999999874 36899999999999999999999999999975
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-52 Score=453.16 Aligned_cols=392 Identities=26% Similarity=0.341 Sum_probs=347.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCcccccccCCCChhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH
Q 000984 782 SYFFAVAGNKLIQRIRSMCFEKVIHMEVSWFDEPEHSSGAIGARLSADAASVRALVGDALARIVQNISTAAAGLIIA-FT 860 (1198)
Q Consensus 782 ~~~~~~~~~~~~~~Lr~~l~~~ll~~p~~fFd~~~~~~G~i~~r~s~D~~~i~~~l~~~l~~~i~~~~~~i~~li~~-~~ 860 (1198)
..++...+..+.+.+--+.|.|+.++++.|+- +..+|.+...+..-...|+..+...+..++..++-+....+++ ..
T Consensus 3 ~~~fs~v~q~a~r~la~~~F~h~~~Lsl~fHl--~r~TGglsR~ierGtkgI~~i~~~~l~~i~P~~~Ei~l~~vi~~~~ 80 (497)
T COG5265 3 DRLFSPVGQIAVRVLAYVTFFHLHSLSLRFHL--ERRTGGLSRAIERGTKGIETILRWILFNILPTLVEISLVAVILWRV 80 (497)
T ss_pred hHhhhHHHHHHHHHHHHHHHHHHHhcchhhhh--hcccCceeeHhhcCcccHHHHHHHHHHHhhHHHHHHHHHHHHHHhh
Confidence 34566778888888999999999999999998 4779999988888888888888888888888877766666554 45
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhchhHHHHHhcchHHHHHHHHHHhhhHHHHhH
Q 000984 861 ASWQLALIILVMLPLIGVSGYTQMKFMKGFSADAKMKYEEASQVANDAVGSIRTVASFCAEEKVMQLYKKKCEAPMKTGI 940 (1198)
Q Consensus 861 ~~~~l~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIraf~~e~~~~~~~~~~~~~~~~~~~ 940 (1198)
.+|+.+++.++++.+++++.....-..-...++..++.+++++...+++-+..|+|.|+.|+++..+|...++.+.++..
T Consensus 81 ~~~~f~~~t~vtv~lY~~ftv~~s~wr~~~rr~~n~aDs~a~~~aidsLlnfEtvk~F~ne~~e~~r~~~~~~~Y~~a~~ 160 (497)
T COG5265 81 YGWWFALTTLVTVILYLLFTVIVSDWRTDFRRLMNNADSDANAKAIDSLLNFETVKYFGNEEYEAVRYDHALETYEKAAI 160 (497)
T ss_pred cccHHHHHHHHHHHHHHHhheeehhhhHHHHHhhhhhhhHHHHHHHHHHhhhhheeecCchhhhhhhcCchHHHHHHHHH
Confidence 79999999999999998888887777777888889999999999999999999999999999999999999999999988
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHh
Q 000984 941 RQGMVSGGGFGASFFLLFAFYAASFYAGARLVEDGKATFSDVFKVFFSLTMTAIGISQSSSFSSDSNKAKSAAASIFAII 1020 (1198)
Q Consensus 941 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~~t~g~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l 1020 (1198)
+.....+........+.......+...+...+..|.+|+|+++....++.+...|+..+.....++.++..-.+++++++
T Consensus 161 k~~~Sl~~Ln~gQ~~I~~~~l~~~m~~s~~~v~~g~~TvgD~V~~Nall~qls~Plnflg~~Yrei~q~ltdme~mfdLl 240 (497)
T COG5265 161 KVHVSLLVLNFGQTAIFSTGLRVMMTMSALGVEEGQLTVGDLVNVNALLFQLSIPLNFLGFSYREIRQALTDMEKMFDLL 240 (497)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHhhcHHHHhhccCCchhHHhHHHHHhhhhhhhhhhHHHHHHHHHhhhhHHHHHHhh
Confidence 87766655555555566666667777888889999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCCCCCCcccCCcccEEEeeeeEECCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCC
Q 000984 1021 DRESKIDPSDESGTILEDVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAG 1100 (1198)
Q Consensus 1021 ~~~~~~~~~~~~~~~~~~~~G~I~f~nVsf~Y~~~~~~~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G 1100 (1198)
+.+.+....++.++..+...|.|.|+||+|.|. |..|+|+|+||++++|+|+||||+||+||||+.++|+||||+++|
T Consensus 241 ~~~~~v~d~pda~~L~~~~~g~v~F~~V~F~y~--~~r~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD~~sG 318 (497)
T COG5265 241 DVEAEVSDAPDAPPLWPVRLGAVAFINVSFAYD--PRRPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSG 318 (497)
T ss_pred ccchhhccCCCCccccccccceEEEEEEEeecc--ccchhhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHhCCcCc
Confidence 988776543332222224568999999999996 356899999999999999999999999999999999999999999
Q ss_pred eEEECCcccCCCChHHHHhhcceeccccccccccHHHHHhcCCCCCCCHHHHHHHHHHcchHHHHHhccccccceeee
Q 000984 1101 HITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQVRTSRLLL 1178 (1198)
Q Consensus 1101 ~I~IDG~dI~~i~l~~LR~~IsiV~Qdp~LF~gTIreNI~~g~~~~~tdeei~~Al~~A~l~dfI~~LP~g~dt~v~~ 1178 (1198)
+|.|||+||+++..++||+.||+||||.+||++||..||+||++ ++|+||+++|+|.|++|+||++||+||||.|.-
T Consensus 319 ~I~id~qdir~vtq~slR~aIg~VPQDtvLFNDti~yni~ygr~-~at~eev~aaa~~aqi~~fi~~lP~gy~t~Vge 395 (497)
T COG5265 319 SITIDGQDIRDVTQQSLRRAIGIVPQDTVLFNDTIAYNIKYGRP-DATAEEVGAAAEAAQIHDFIQSLPEGYDTGVGE 395 (497)
T ss_pred eEEEcchhHHHhHHHHHHHHhCcCcccceehhhhHHHHHhccCc-cccHHHHHHHHHHhhhhHHHHhCchhhhcccch
Confidence 99999999999999999999999999999999999999999964 899999999999999999999999999999874
|
|
| >PRK13549 xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-50 Score=493.33 Aligned_cols=212 Identities=25% Similarity=0.435 Sum_probs=176.7
Q ss_pred cEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCC--CCCeEEECCeecCCcCHHH-Hh
Q 000984 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDP--QAGEVLIDGINLKEFQLQW-IR 459 (1198)
Q Consensus 383 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~--~~G~i~i~g~~~~~~~~~~-~r 459 (1198)
.|+++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++| ++|+|.++|.++...+... .|
T Consensus 5 ~l~~~nl~~~~~~---~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~ 81 (506)
T PRK13549 5 LLEMKNITKTFGG---VKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIRDTER 81 (506)
T ss_pred eEEEeeeEEEeCC---eEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHH
Confidence 4899999999963 4699999999999999999999999999999999999986 8999999999998776554 46
Q ss_pred cceEEEcCCCCCCc-ccHHHHHhcCCCC-----CCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhH
Q 000984 460 KKIGLVSQEPVLFT-GSIKDNIAYGKDD-----ATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAI 533 (1198)
Q Consensus 460 ~~i~~v~Q~~~l~~-~ti~~Ni~~~~~~-----~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~l 533 (1198)
++++||+|+|.++. .|++||+.++... .+.++..+ .+.+.++.+ |++........+||||||||++|
T Consensus 82 ~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LSgGqkqrv~l 154 (506)
T PRK13549 82 AGIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYL-----RAQKLLAQL--KLDINPATPVGNLGLGQQQLVEI 154 (506)
T ss_pred CCeEEEEeccccCCCCcHHHHhhhcccccccCCcCHHHHHH-----HHHHHHHHc--CCCCCcccchhhCCHHHHHHHHH
Confidence 78999999998875 5999999986421 12222211 122334444 55445566677899999999999
Q ss_pred HHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh-CCCeEEEEecCcchhhc-cCEEEEEeCCEEEEecCh
Q 000984 534 ARAILKDPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTH 604 (1198)
Q Consensus 534 ARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~ 604 (1198)
|||++.+|++|||||||++||+.+...+.+.|.++. +++|+|++||+++.+.. ||+|++|++|++++.|++
T Consensus 155 a~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvi~~tH~~~~~~~~~d~v~~l~~G~i~~~~~~ 227 (506)
T PRK13549 155 AKALNKQARLLILDEPTASLTESETAVLLDIIRDLKAHGIACIYISHKLNEVKAISDTICVIRDGRHIGTRPA 227 (506)
T ss_pred HHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHHhcCEEEEEECCEEeeeccc
Confidence 999999999999999999999999999999998864 46899999999999865 999999999999876653
|
|
| >COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-49 Score=457.21 Aligned_cols=227 Identities=28% Similarity=0.484 Sum_probs=180.5
Q ss_pred cEEEEeEEEEcCCCCC-CccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCC----CCeEEECCeecCCcCHHH
Q 000984 383 DIELRDVYFSYPARPN-EQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQ----AGEVLIDGINLKEFQLQW 457 (1198)
Q Consensus 383 ~i~~~~v~~~y~~~~~-~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~----~G~i~i~g~~~~~~~~~~ 457 (1198)
-++++|++..|....+ ..+++||||++.+||.+||||.|||||||++++|+|+.++. +|+|.++|.|+..++.+.
T Consensus 5 lL~V~nL~v~~~~~~~~~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~~ 84 (539)
T COG1123 5 LLEVENLTVEFATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSERE 84 (539)
T ss_pred eEEEeceEEEEecCCcceeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHHH
Confidence 5899999999976532 25999999999999999999999999999999999999887 899999999998888765
Q ss_pred Hh----cceEEEcCCCC-CCcc--cHHHHHh----cCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChH
Q 000984 458 IR----KKIGLVSQEPV-LFTG--SIKDNIA----YGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGG 526 (1198)
Q Consensus 458 ~r----~~i~~v~Q~~~-l~~~--ti~~Ni~----~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgG 526 (1198)
.| +.|+|++|+|. .+|. ||.+-|. .......++...++.+. .+.+ .+|+.... ......||||
T Consensus 85 ~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~~~~~~ea~~~a~el---L~~V-gl~~~~~~--~~yPheLSGG 158 (539)
T COG1123 85 MRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGSRAEARKRAVEL---LEQV-GLPDPERR--DRYPHQLSGG 158 (539)
T ss_pred HHHhccccEEEEecCchhhcCchhhHHHHHHHHHHHhccccHHHHHHHHHHH---HHHc-CCCChhhh--ccCCcccCch
Confidence 53 57999999995 4543 5544443 22211112222222221 1211 23333222 4577899999
Q ss_pred HHHHHhHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh--CCCeEEEEecCcchhhc-cCEEEEEeCCEEEEecC
Q 000984 527 QKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIM--VNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGT 603 (1198)
Q Consensus 527 qkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~--~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~ 603 (1198)
||||+.||+||..+|++||+||||.+||+.+..+|.+.|+++. .+.++|+|||++..+.. ||||+||++|+++|.|+
T Consensus 159 ~rQRv~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e~g~a~l~ITHDl~Vva~~aDrv~Vm~~G~iVE~G~ 238 (539)
T COG1123 159 MRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLGVVAELADRVVVMYKGEIVETGP 238 (539)
T ss_pred HHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHHHcCcEEEEEcCCHHHHHHhcCeEEEEECCEEEEecC
Confidence 9999999999999999999999999999999999999999876 47899999999999876 99999999999999999
Q ss_pred hhhHhcCCCchh
Q 000984 604 HSKLVEDPEGAY 615 (1198)
Q Consensus 604 ~~~l~~~~~~~~ 615 (1198)
.+++++++...|
T Consensus 239 ~~~i~~~p~hpY 250 (539)
T COG1123 239 TEEILSNPQHPY 250 (539)
T ss_pred HHHHHhccCCcc
Confidence 999987654333
|
|
| >PRK10261 glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-49 Score=491.47 Aligned_cols=221 Identities=28% Similarity=0.436 Sum_probs=177.3
Q ss_pred ccEEEEeEEEEcCCCC-CCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecC---------
Q 000984 382 GDIELRDVYFSYPARP-NEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLK--------- 451 (1198)
Q Consensus 382 g~i~~~~v~~~y~~~~-~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~--------- 451 (1198)
..|+++|++++|+... ..++|+||||++++||+++|+|+||||||||+++|+|+++|.+|+|.++|+++.
T Consensus 11 ~~l~v~~l~~~y~~~~~~~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~~G~i~~~g~~~~~~~~~~~~~ 90 (623)
T PRK10261 11 DVLAVENLNIAFMQEQQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRSRQVIEL 90 (623)
T ss_pred ceEEEeceEEEecCCCCceeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCeEEEECCEEecccccccccc
Confidence 3599999999996422 246999999999999999999999999999999999999999999999997552
Q ss_pred -CcCHH---HHh-cceEEEcCCC--CCCc-ccHHHHHhcCCC---CCCHHHHHHHHHHhcHHHHHHhCCCCc---cchhc
Q 000984 452 -EFQLQ---WIR-KKIGLVSQEP--VLFT-GSIKDNIAYGKD---DATTEEIRVATELANAAKFIDKLPQGI---DTLVG 517 (1198)
Q Consensus 452 -~~~~~---~~r-~~i~~v~Q~~--~l~~-~ti~~Ni~~~~~---~~~~~~~~~~~~~~~~~~~i~~l~~g~---~t~v~ 517 (1198)
+.+.. .+| ++|+||+|+| .++. .||+||+.++.. ..+..+..+ .+.+.++.+ |+ +....
T Consensus 91 ~~~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~-----~~~~~l~~~--gL~~~~~~~~ 163 (623)
T PRK10261 91 SEQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAMV-----EAKRMLDQV--RIPEAQTILS 163 (623)
T ss_pred ccCCHHHHHHHhCCCEEEEEeCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHH-----HHHHHHHHC--CCCChhhHHh
Confidence 22222 334 4799999998 5665 699999987521 112222111 112233333 44 23456
Q ss_pred CCCCCCChHHHHHHhHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhC--CCeEEEEecCcchhhc-cCEEEEEe
Q 000984 518 EHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRN-ADMIAVIH 594 (1198)
Q Consensus 518 ~~g~~lSgGqkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~~-~d~i~~l~ 594 (1198)
....+||||||||++|||||+.+|++|||||||++||+.+.+.+.+.++++.+ ++|+|+|||+++.+.. ||+|++|+
T Consensus 164 ~~~~~LSgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~ll~~l~~~~g~tvi~itHdl~~~~~~adri~vl~ 243 (623)
T PRK10261 164 RYPHQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMGVVAEIADRVLVMY 243 (623)
T ss_pred CCCccCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEee
Confidence 67788999999999999999999999999999999999999999999988753 7899999999998865 99999999
Q ss_pred CCEEEEecChhhHhc
Q 000984 595 RGKIVEKGTHSKLVE 609 (1198)
Q Consensus 595 ~G~i~~~g~~~~l~~ 609 (1198)
+|++++.|+++++..
T Consensus 244 ~G~i~~~g~~~~~~~ 258 (623)
T PRK10261 244 QGEAVETGSVEQIFH 258 (623)
T ss_pred CCeecccCCHHHhhc
Confidence 999999999887754
|
|
| >PRK09700 D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-49 Score=485.07 Aligned_cols=214 Identities=24% Similarity=0.424 Sum_probs=177.1
Q ss_pred cEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHH-hcc
Q 000984 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWI-RKK 461 (1198)
Q Consensus 383 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~-r~~ 461 (1198)
.|+++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|.|+++|++|+|.++|.++...+.... +++
T Consensus 5 ~l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~ 81 (510)
T PRK09700 5 YISMAGIGKSFGP---VHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLAAQLG 81 (510)
T ss_pred eEEEeeeEEEcCC---eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCCccEEEECCEECCCCCHHHHHHCC
Confidence 4899999999963 469999999999999999999999999999999999999999999999999987776543 467
Q ss_pred eEEEcCCCCCCc-ccHHHHHhcCCCCC---------CHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHH
Q 000984 462 IGLVSQEPVLFT-GSIKDNIAYGKDDA---------TTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRI 531 (1198)
Q Consensus 462 i~~v~Q~~~l~~-~ti~~Ni~~~~~~~---------~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri 531 (1198)
++|++|++.++. .|++||+.++.... +.++..+ .+.+.++.+ |+.........+||||||||+
T Consensus 82 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~--gl~~~~~~~~~~LSgG~~qrv 154 (510)
T PRK09700 82 IGIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRV-----RAAMMLLRV--GLKVDLDEKVANLSISHKQML 154 (510)
T ss_pred eEEEeecccccCCCcHHHHhhhccccccccccccccCHHHHHH-----HHHHHHHHc--CCCCCcccchhhCCHHHHHHH
Confidence 999999998875 59999998753210 1111111 122333433 454445566678999999999
Q ss_pred hHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh-CCCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChhh
Q 000984 532 AIARAILKDPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSK 606 (1198)
Q Consensus 532 ~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~ 606 (1198)
+|||||+.+|++|||||||++||+.+...+.+.|+++. +++|+|++||+++.+.. ||+|++|++|++++.|++++
T Consensus 155 ~ia~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~ 231 (510)
T PRK09700 155 EIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKLAEIRRICDRYTVMKDGSSVCSGMVSD 231 (510)
T ss_pred HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEeeecchhh
Confidence 99999999999999999999999999999999998864 46899999999999875 99999999999987776543
|
|
| >PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-49 Score=481.54 Aligned_cols=218 Identities=30% Similarity=0.472 Sum_probs=174.1
Q ss_pred cEEEEeEEEEcCCC-CCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCC-----CCCeEEECCeecCCcCHH
Q 000984 383 DIELRDVYFSYPAR-PNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDP-----QAGEVLIDGINLKEFQLQ 456 (1198)
Q Consensus 383 ~i~~~~v~~~y~~~-~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~-----~~G~i~i~g~~~~~~~~~ 456 (1198)
.|+++|++++|+.. .+.++|+|+||++++||+++|+||||||||||+++|+|+++| ++|+|.++|.++...+..
T Consensus 5 ~l~~~~l~~~~~~~~~~~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~ 84 (529)
T PRK15134 5 LLAIENLSVAFRQQQTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHASEQ 84 (529)
T ss_pred eEEEeceEEEecCCCCceeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccCCHH
Confidence 48999999999632 124699999999999999999999999999999999999986 799999999999877644
Q ss_pred H---Hh-cceEEEcCCCC--CC-cccHHHHHhcCC---CCCCHHHHHHHHHHhcHHHHHHhCCCCccc---hhcCCCCCC
Q 000984 457 W---IR-KKIGLVSQEPV--LF-TGSIKDNIAYGK---DDATTEEIRVATELANAAKFIDKLPQGIDT---LVGEHGTQL 523 (1198)
Q Consensus 457 ~---~r-~~i~~v~Q~~~--l~-~~ti~~Ni~~~~---~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t---~v~~~g~~l 523 (1198)
. +| ++++|++|+|. ++ ..|+++|+.++. ...+.++..+ .+.+.++.+ |++. .......+|
T Consensus 85 ~~~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~--gl~~~~~~~~~~~~~L 157 (529)
T PRK15134 85 TLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHRGMRREAARG-----EILNCLDRV--GIRQAAKRLTDYPHQL 157 (529)
T ss_pred HHHHHhcCceEEEecCchhhcCchhhHHHHHHHHHHHhcCCCHHHHHH-----HHHHHHHHC--CCCChHHHHhhCCccc
Confidence 3 33 57999999985 44 358999986421 1112221111 112223333 3322 245567789
Q ss_pred ChHHHHHHhHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh--CCCeEEEEecCcchhhc-cCEEEEEeCCEEEE
Q 000984 524 SGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIM--VNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVE 600 (1198)
Q Consensus 524 SgGqkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~--~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~ 600 (1198)
|||||||++|||||+.+|++|||||||++||+.+.+.+.+.++++. .++|+|+|||+++.+.. ||+|++|++|++++
T Consensus 158 SgGe~qrv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~dri~~l~~G~i~~ 237 (529)
T PRK15134 158 SGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNLSIVRKLADRVAVMQNGRCVE 237 (529)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHhcCEEEEEECCEEEE
Confidence 9999999999999999999999999999999999999999998864 36899999999998865 99999999999998
Q ss_pred ecChhhH
Q 000984 601 KGTHSKL 607 (1198)
Q Consensus 601 ~g~~~~l 607 (1198)
.|+++++
T Consensus 238 ~g~~~~~ 244 (529)
T PRK15134 238 QNRAATL 244 (529)
T ss_pred eCCHHHH
Confidence 8877654
|
|
| >PRK10762 D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-49 Score=479.62 Aligned_cols=212 Identities=24% Similarity=0.404 Sum_probs=174.9
Q ss_pred cEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHH-Hhcc
Q 000984 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQW-IRKK 461 (1198)
Q Consensus 383 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~-~r~~ 461 (1198)
.|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+... .+++
T Consensus 4 ~i~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~ 80 (501)
T PRK10762 4 LLQLKGIDKAFPG---VKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQEAG 80 (501)
T ss_pred eEEEeeeEEEeCC---eEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCC
Confidence 4899999999953 46999999999999999999999999999999999999999999999999987665444 3578
Q ss_pred eEEEcCCCCCCc-ccHHHHHhcCCCC------CCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHH
Q 000984 462 IGLVSQEPVLFT-GSIKDNIAYGKDD------ATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIA 534 (1198)
Q Consensus 462 i~~v~Q~~~l~~-~ti~~Ni~~~~~~------~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lA 534 (1198)
++|++|++.++. .|++||+.++... .+.++.++ .+.+.++.+ |+.........+||||||||++||
T Consensus 81 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LSgG~~qrv~la 153 (501)
T PRK10762 81 IGIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYA-----EADKLLARL--NLRFSSDKLVGELSIGEQQMVEIA 153 (501)
T ss_pred EEEEEcchhccCCCcHHHHhhhccccccccCccCHHHHHH-----HHHHHHHHc--CCCCCccCchhhCCHHHHHHHHHH
Confidence 999999998875 5999999986421 11222111 122334443 454444556678999999999999
Q ss_pred HhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh-CCCeEEEEecCcchhhc-cCEEEEEeCCEEEEecCh
Q 000984 535 RAILKDPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTH 604 (1198)
Q Consensus 535 Ral~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~ 604 (1198)
|||+.+|++|||||||++||+.+.+.+.+.++++. +++|+|++||+++.+.. ||+|++|++|++++.|++
T Consensus 154 ~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvii~sHd~~~~~~~~d~i~~l~~G~i~~~~~~ 225 (501)
T PRK10762 154 KVLSFESKVIIMDEPTDALTDTETESLFRVIRELKSQGRGIVYISHRLKEIFEICDDVTVFRDGQFIAEREV 225 (501)
T ss_pred HHHhcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEecCc
Confidence 99999999999999999999999999999988764 46899999999998865 999999999999876543
|
|
| >TIGR01257 rim_protein retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-46 Score=491.95 Aligned_cols=220 Identities=23% Similarity=0.447 Sum_probs=187.4
Q ss_pred ccEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcc
Q 000984 382 GDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKK 461 (1198)
Q Consensus 382 g~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~ 461 (1198)
..|+++|+++.|++. ++++++|+||++++||+++|+||||||||||+++|.|+++|++|+|.++|.++.. +....|++
T Consensus 927 ~~L~I~nLsK~y~~~-~k~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~PtsG~I~i~G~dI~~-~~~~~r~~ 1004 (2272)
T TIGR01257 927 PGVCVKNLVKIFEPS-GRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIET-NLDAVRQS 1004 (2272)
T ss_pred ceEEEEeEEEEecCC-CceEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCCCCceEEEECCEECcc-hHHHHhhc
Confidence 369999999999532 3569999999999999999999999999999999999999999999999999865 46677889
Q ss_pred eEEEcCCCCCCc-ccHHHHHhcCCC--CCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhhc
Q 000984 462 IGLVSQEPVLFT-GSIKDNIAYGKD--DATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAIL 538 (1198)
Q Consensus 462 i~~v~Q~~~l~~-~ti~~Ni~~~~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal~ 538 (1198)
+|||||++.+|. .|++|||.++.. ..+.++.++ .+.+.++.+ |++........+||||||||++||||++
T Consensus 1005 IG~~pQ~~~L~~~LTV~E~L~f~~~lkg~~~~~~~~-----~v~~lL~~v--gL~~~~~~~~~~LSGGqKQRLsLArALi 1077 (2272)
T TIGR01257 1005 LGMCPQHNILFHHLTVAEHILFYAQLKGRSWEEAQL-----EMEAMLEDT--GLHHKRNEEAQDLSGGMQRKLSVAIAFV 1077 (2272)
T ss_pred EEEEecCCcCCCCCCHHHHHHHHHHhcCCCHHHHHH-----HHHHHHHHc--CCchhhcCChhhCCHHHHHHHHHHHHHH
Confidence 999999999886 699999987421 112222211 122334443 5666667777899999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhCCCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChhhHhcC
Q 000984 539 KDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVED 610 (1198)
Q Consensus 539 ~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 610 (1198)
.+|+++|||||||+||+.+.+.+.+.|+++.+++|+|++||+++.+.. ||||++|++|++++.|++++|.++
T Consensus 1078 ~~PkVLLLDEPTSGLDp~sr~~l~~lL~~l~~g~TIIltTHdmdea~~laDrI~iL~~GkL~~~Gs~~~Lk~~ 1150 (2272)
T TIGR01257 1078 GDAKVVVLDEPTSGVDPYSRRSIWDLLLKYRSGRTIIMSTHHMDEADLLGDRIAIISQGRLYCSGTPLFLKNC 1150 (2272)
T ss_pred cCCCEEEEECCCcCCCHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEecCHHHHHHh
Confidence 999999999999999999999999999988778999999999999875 999999999999999999998653
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. |
| >TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-49 Score=479.28 Aligned_cols=209 Identities=25% Similarity=0.445 Sum_probs=171.0
Q ss_pred EEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCC--CCCeEEECCeecCCcCHHH-Hhc
Q 000984 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDP--QAGEVLIDGINLKEFQLQW-IRK 460 (1198)
Q Consensus 384 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~--~~G~i~i~g~~~~~~~~~~-~r~ 460 (1198)
|+++|++++|+. .++|+|+||++++||+++|+||||||||||+++|+|+++| ++|+|.++|.++...+... .|+
T Consensus 2 l~i~~l~~~~~~---~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 78 (500)
T TIGR02633 2 LEMKGIVKTFGG---VKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTERA 78 (500)
T ss_pred EEEEeEEEEeCC---eEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHhC
Confidence 689999999963 4699999999999999999999999999999999999987 7999999999998776544 457
Q ss_pred ceEEEcCCCCCCc-ccHHHHHhcCCCC------CCHHHHHHHHHHhcHHHHHHhCCCCccchh-cCCCCCCChHHHHHHh
Q 000984 461 KIGLVSQEPVLFT-GSIKDNIAYGKDD------ATTEEIRVATELANAAKFIDKLPQGIDTLV-GEHGTQLSGGQKQRIA 532 (1198)
Q Consensus 461 ~i~~v~Q~~~l~~-~ti~~Ni~~~~~~------~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v-~~~g~~lSgGqkqri~ 532 (1198)
+++|++|+|.++. .|++||+.++... ...++... .+.+.++.+ |++... ......||||||||++
T Consensus 79 ~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~~LSgG~~qrv~ 151 (500)
T TIGR02633 79 GIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYL-----RAKNLLREL--QLDADNVTRPVGDYGGGQQQLVE 151 (500)
T ss_pred CEEEEeeccccCCCCcHHHHHHhhccccccccccCHHHHHH-----HHHHHHHHc--CCCCCcccCchhhCCHHHHHHHH
Confidence 8999999998875 5999999876421 11122111 122334443 343222 2345689999999999
Q ss_pred HHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh-CCCeEEEEecCcchhhc-cCEEEEEeCCEEEEec
Q 000984 533 IARAILKDPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKG 602 (1198)
Q Consensus 533 lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g 602 (1198)
|||||+.+|++|||||||++||+.+.+.+.+.|+++. +++|+|+|||+++.+.. ||+|++|++|++++.|
T Consensus 152 iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiitHd~~~~~~~~d~i~~l~~G~i~~~~ 223 (500)
T TIGR02633 152 IAKALNKQARLLILDEPSSSLTEKETEILLDIIRDLKAHGVACVYISHKLNEVKAVCDTICVIRDGQHVATK 223 (500)
T ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHHHhCCEEEEEeCCeEeeec
Confidence 9999999999999999999999999999999998764 46899999999999875 9999999999987544
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). |
| >TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-49 Score=482.32 Aligned_cols=211 Identities=26% Similarity=0.498 Sum_probs=167.6
Q ss_pred EEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccC--CCCCCeEEEC---------------
Q 000984 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFY--DPQAGEVLID--------------- 446 (1198)
Q Consensus 384 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~--~~~~G~i~i~--------------- 446 (1198)
|+++|++++|+. .++|+|+||++++||+++|+||||||||||+++|+|+. +|++|+|.++
T Consensus 1 l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~~~~~~~~~~~~~~~~ 77 (520)
T TIGR03269 1 IEVKNLTKKFDG---KEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYVERPSK 77 (520)
T ss_pred CEEEEEEEEECC---eEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCCceEEEEeccccccccccccccc
Confidence 478999999953 46999999999999999999999999999999999996 7999999997
Q ss_pred --------CeecC-------CcC---HHHHhcceEEEcCC-CCCCc-ccHHHHHhcCCCC--CCHHHHHHHHHHhcHHHH
Q 000984 447 --------GINLK-------EFQ---LQWIRKKIGLVSQE-PVLFT-GSIKDNIAYGKDD--ATTEEIRVATELANAAKF 504 (1198)
Q Consensus 447 --------g~~~~-------~~~---~~~~r~~i~~v~Q~-~~l~~-~ti~~Ni~~~~~~--~~~~~~~~~~~~~~~~~~ 504 (1198)
|.++. ..+ ...+|+.++|++|+ +.+|. .|+++|+.++... ...++..+ .+.+.
T Consensus 78 ~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~-----~~~~~ 152 (520)
T TIGR03269 78 VGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEIGYEGKEAVG-----RAVDL 152 (520)
T ss_pred cccccccccccccccchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHcCCCHHHHHH-----HHHHH
Confidence 33221 111 13457789999998 56775 5999999874321 12222111 12233
Q ss_pred HHhCCCCccchhcCCCCCCChHHHHHHhHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhC--CCeEEEEecCcc
Q 000984 505 IDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLS 582 (1198)
Q Consensus 505 i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~ 582 (1198)
++.+ |++........+||||||||++|||||+.+|++|||||||++||+++.+.+.+.++++.+ ++|+|+|||+++
T Consensus 153 l~~~--gl~~~~~~~~~~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivtHd~~ 230 (520)
T TIGR03269 153 IEMV--QLSHRITHIARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPE 230 (520)
T ss_pred HHHc--CChhhhhcCcccCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHH
Confidence 3443 555555666788999999999999999999999999999999999999999999988743 689999999999
Q ss_pred hhhc-cCEEEEEeCCEEEEecCh
Q 000984 583 TVRN-ADMIAVIHRGKIVEKGTH 604 (1198)
Q Consensus 583 ~~~~-~d~i~~l~~G~i~~~g~~ 604 (1198)
.+.. ||+|++|++|++++.|++
T Consensus 231 ~~~~~~d~i~~l~~G~i~~~g~~ 253 (520)
T TIGR03269 231 VIEDLSDKAIWLENGEIKEEGTP 253 (520)
T ss_pred HHHHhcCEEEEEeCCEEeeecCH
Confidence 9865 999999999998765543
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. |
| >cd03289 ABCC_CFTR2 The CFTR subfamily domain 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-48 Score=433.40 Aligned_cols=236 Identities=28% Similarity=0.507 Sum_probs=220.1
Q ss_pred ccEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcc
Q 000984 382 GDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKK 461 (1198)
Q Consensus 382 g~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~ 461 (1198)
|.|+++|++++|+.. .+++|+|+||+|++||+++|+|+||||||||+++|+|+++ .+|+|.+||.++..++..++|++
T Consensus 1 g~i~~~nls~~~~~~-~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~-~~G~I~i~g~~i~~~~~~~lr~~ 78 (275)
T cd03289 1 GQMTVKDLTAKYTEG-GNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGDIQIDGVSWNSVPLQKWRKA 78 (275)
T ss_pred CeEEEEEEEEEeCCC-CCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEhhhCCHHHHhhh
Confidence 468999999999743 3569999999999999999999999999999999999997 78999999999999999999999
Q ss_pred eEEEcCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhhccCC
Q 000984 462 IGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDP 541 (1198)
Q Consensus 462 i~~v~Q~~~l~~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal~~~~ 541 (1198)
|+||||+|++|++|+++|+.+.. ..++++++++++.+++.+++..+|+|+++.++++|.+||||||||++||||++++|
T Consensus 79 i~~v~q~~~lf~~tv~~nl~~~~-~~~~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRall~~p 157 (275)
T cd03289 79 FGVIPQKVFIFSGTFRKNLDPYG-KWSDEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKA 157 (275)
T ss_pred EEEECCCcccchhhHHHHhhhcc-CCCHHHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCC
Confidence 99999999999999999997432 35678999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHhHHHHHHHHHHHhCCCeEEEEecCcchhhccCEEEEEeCCEEEEecChhhHhcCCCchhHHHHHH
Q 000984 542 RILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVEDPEGAYSQLIRL 621 (1198)
Q Consensus 542 ~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~ 621 (1198)
+|+||||||++||+.+.+.+++.|++..+++|+|+|||+++.+..||||++|++|++++.|+|++|+++ .+.|++++..
T Consensus 158 ~illlDEpts~LD~~~~~~l~~~l~~~~~~~tii~isH~~~~i~~~dri~vl~~G~i~~~g~~~~l~~~-~~~~~~~~~~ 236 (275)
T cd03289 158 KILLLDEPSAHLDPITYQVIRKTLKQAFADCTVILSEHRIEAMLECQRFLVIEENKVRQYDSIQKLLNE-KSHFKQAISP 236 (275)
T ss_pred CEEEEECccccCCHHHHHHHHHHHHHhcCCCEEEEEECCHHHHHhCCEEEEecCCeEeecCCHHHHhhC-cHHHHHHHhh
Confidence 999999999999999999999999988788999999999999999999999999999999999999986 5777777753
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-48 Score=473.47 Aligned_cols=209 Identities=25% Similarity=0.428 Sum_probs=173.6
Q ss_pred cEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCH-HHHhcc
Q 000984 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQL-QWIRKK 461 (1198)
Q Consensus 383 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~-~~~r~~ 461 (1198)
.|+++|++++|++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. ..+|++
T Consensus 4 ~l~~~~l~~~~~~---~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~ 80 (501)
T PRK11288 4 YLSFDGIGKTFPG---VKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAALAAG 80 (501)
T ss_pred eEEEeeeEEEECC---EEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHhCC
Confidence 4899999999963 469999999999999999999999999999999999999999999999999875543 456788
Q ss_pred eEEEcCCCCCCc-ccHHHHHhcCCCC-----CCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHH
Q 000984 462 IGLVSQEPVLFT-GSIKDNIAYGKDD-----ATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIAR 535 (1198)
Q Consensus 462 i~~v~Q~~~l~~-~ti~~Ni~~~~~~-----~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lAR 535 (1198)
++|++|+|.++. .|++||+.++... .+..+..+ .+.+.++.+ |++........+||||||||++|||
T Consensus 81 i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LSgGq~qrv~lar 153 (501)
T PRK11288 81 VAIIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNY-----EAREQLEHL--GVDIDPDTPLKYLSIGQRQMVEIAK 153 (501)
T ss_pred EEEEEechhccCCCCHHHHHHhcccccccCCCCHHHHHH-----HHHHHHHHc--CCCCCcCCchhhCCHHHHHHHHHHH
Confidence 999999998886 5999999986321 11222111 122334444 4444445566789999999999999
Q ss_pred hhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh-CCCeEEEEecCcchhhc-cCEEEEEeCCEEEEe
Q 000984 536 AILKDPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEK 601 (1198)
Q Consensus 536 al~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~ 601 (1198)
|++.+|++|||||||++||+.+.+.+.+.++++. +++|+|+|||+++.+.. ||+|++|++|++++.
T Consensus 154 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiiitHd~~~~~~~~d~i~~l~~G~i~~~ 221 (501)
T PRK11288 154 ALARNARVIAFDEPTSSLSAREIEQLFRVIRELRAEGRVILYVSHRMEEIFALCDAITVFKDGRYVAT 221 (501)
T ss_pred HHHhCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEee
Confidence 9999999999999999999999999999998764 46899999999998865 999999999998753
|
|
| >PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-48 Score=471.05 Aligned_cols=210 Identities=19% Similarity=0.296 Sum_probs=176.1
Q ss_pred cEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcce
Q 000984 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKI 462 (1198)
Q Consensus 383 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i 462 (1198)
.|+++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.+
T Consensus 3 ~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~~G~i~~~~~~~~~~~~~~~~~~i 79 (490)
T PRK10938 3 SLQISQGTFRLSD---TKTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPLLSGERQSQFSHITRLSFEQLQKLV 79 (490)
T ss_pred eEEEEeEEEEcCC---eeecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCceEEECCcccccCCHHHHHHHh
Confidence 3889999999963 3599999999999999999999999999999999999999999999999888777767777889
Q ss_pred EEEcCCCCC--C-------cccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhH
Q 000984 463 GLVSQEPVL--F-------TGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAI 533 (1198)
Q Consensus 463 ~~v~Q~~~l--~-------~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~l 533 (1198)
+|++|+|.+ + ..|+++|+.++. ...+++.++++.. |++.........||||||||++|
T Consensus 80 ~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~-----------~l~~~~~~~~~~LSgG~~qrv~l 146 (490)
T PRK10938 80 SDEWQRNNTDMLSPGEDDTGRTTAEIIQDEV--KDPARCEQLAQQF-----------GITALLDRRFKYLSTGETRKTLL 146 (490)
T ss_pred ceeccCcchhhcccchhhccccHHHhcccch--hHHHHHHHHHHHc-----------CCHhhhhCCcccCCHHHHHHHHH
Confidence 999998753 2 458999986531 1123333343333 44444455667899999999999
Q ss_pred HHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhC-CCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChhhHh
Q 000984 534 ARAILKDPRILLLDEATSALDAESEKVVQEALDRIMV-NRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLV 608 (1198)
Q Consensus 534 ARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~-~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~ 608 (1198)
|||++.+|++|||||||++||+.+.+.+.+.|+++.+ ++|+|++||+++.+.. ||+|++|++|+++..|+++++.
T Consensus 147 a~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 223 (490)
T PRK10938 147 CQALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQSGITLVLVLNRFDEIPDFVQFAGVLADCTLAETGEREEIL 223 (490)
T ss_pred HHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEECCEEEEeCCHHHHh
Confidence 9999999999999999999999999999999988754 6899999999998865 9999999999999888766553
|
|
| >TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-46 Score=499.33 Aligned_cols=206 Identities=23% Similarity=0.291 Sum_probs=165.9
Q ss_pred CccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccC----CCCCCeEEECCeecCCcCHHHHhcceEEEcCCCCCCc-
Q 000984 399 EQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFY----DPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFT- 473 (1198)
Q Consensus 399 ~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~----~~~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~~- 473 (1198)
+++|+|+|+++++||+++|+||||||||||+++|.|.. .|.+|+|.+||.++.+.. ...|+.++||+|++.++.
T Consensus 74 ~~iL~~vs~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~-~~~r~~i~yv~Q~d~~~~~ 152 (1394)
T TIGR00956 74 FDILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIK-KHYRGDVVYNAETDVHFPH 152 (1394)
T ss_pred ceeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHH-hhcCceeEEeccccccCCC
Confidence 46999999999999999999999999999999999986 468999999999886543 345778999999988775
Q ss_pred ccHHHHHhcCC----C-----CCCHHHHHH-HHHHhcHHHHHHhCCCCccchhcC-CCCCCChHHHHHHhHHHhhccCCC
Q 000984 474 GSIKDNIAYGK----D-----DATTEEIRV-ATELANAAKFIDKLPQGIDTLVGE-HGTQLSGGQKQRIAIARAILKDPR 542 (1198)
Q Consensus 474 ~ti~~Ni~~~~----~-----~~~~~~~~~-~~~~~~~~~~i~~l~~g~~t~v~~-~g~~lSgGqkqri~lARal~~~~~ 542 (1198)
.||+||+.|+. | ..+.++..+ ..+. +.+.+ .+.+-.+|.+|+ ....||||||||++|||||+.+|+
T Consensus 153 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~--~l~~l-gL~~~~~t~vg~~~~~~LSGGerkRvsIA~aL~~~p~ 229 (1394)
T TIGR00956 153 LTVGETLDFAARCKTPQNRPDGVSREEYAKHIADV--YMATY-GLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLGGAK 229 (1394)
T ss_pred CCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHH--HHHHc-CcccccCceeCCCcCCCCCcccchHHHHHHHHHhCCC
Confidence 69999998752 1 122222211 1110 11111 233345677765 456799999999999999999999
Q ss_pred EEEEeCCCCCCCHHhHHHHHHHHHHHhC--CCeEEEEecCcc-hh-hccCEEEEEeCCEEEEecChhhHh
Q 000984 543 ILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLS-TV-RNADMIAVIHRGKIVEKGTHSKLV 608 (1198)
Q Consensus 543 illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~-~~-~~~d~i~~l~~G~i~~~g~~~~l~ 608 (1198)
+++|||||++||+.+...+.+.|+++.+ ++|+|+++|++. .+ ..+|+|++|++|++++.|+++++.
T Consensus 230 vlllDEPTsgLD~~~~~~i~~~L~~la~~~g~tvii~~Hq~~~~i~~l~D~v~~L~~G~iv~~G~~~~~~ 299 (1394)
T TIGR00956 230 IQCWDNATRGLDSATALEFIRALKTSANILDTTPLVAIYQCSQDAYELFDKVIVLYEGYQIYFGPADKAK 299 (1394)
T ss_pred EEEEeCCCCCcCHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEeCCeEEEECCHHHHH
Confidence 9999999999999999999999998753 789999999974 44 459999999999999999998873
|
|
| >PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-48 Score=468.42 Aligned_cols=213 Identities=27% Similarity=0.458 Sum_probs=179.1
Q ss_pred cEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHh-cc
Q 000984 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIR-KK 461 (1198)
Q Consensus 383 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r-~~ 461 (1198)
.|+++|++++|++ +++|+|+||++++||+++|+||||||||||+++|.|+++|++|+|.++|.++...+....+ ..
T Consensus 11 ~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 87 (510)
T PRK15439 11 LLCARSISKQYSG---VEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKAHQLG 87 (510)
T ss_pred eEEEEeEEEEeCC---ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHhCC
Confidence 5999999999963 4699999999999999999999999999999999999999999999999999877766654 57
Q ss_pred eEEEcCCCCCCc-ccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhhccC
Q 000984 462 IGLVSQEPVLFT-GSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKD 540 (1198)
Q Consensus 462 i~~v~Q~~~l~~-~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal~~~ 540 (1198)
++|++|++.++. .|++||+.++.... .+.++ .+.+.++.+ |++........+||||||||++|||||+.+
T Consensus 88 i~~v~q~~~~~~~~tv~e~l~~~~~~~--~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LSgG~~qrv~la~aL~~~ 158 (510)
T PRK15439 88 IYLVPQEPLLFPNLSVKENILFGLPKR--QASMQ-----KMKQLLAAL--GCQLDLDSSAGSLEVADRQIVEILRGLMRD 158 (510)
T ss_pred EEEEeccCccCCCCcHHHHhhcccccc--hHHHH-----HHHHHHHHc--CCCccccCChhhCCHHHHHHHHHHHHHHcC
Confidence 999999998886 59999999864321 11111 112233333 444445566678999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHhHHHHHHHHHHHh-CCCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChhhH
Q 000984 541 PRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKL 607 (1198)
Q Consensus 541 ~~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l 607 (1198)
|++|||||||++||+.+.+.+.+.|+++. +++|+|++||+++.+.. ||+|++|++|++++.|+++++
T Consensus 159 p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 227 (510)
T PRK15439 159 SRILILDEPTASLTPAETERLFSRIRELLAQGVGIVFISHKLPEIRQLADRISVMRDGTIALSGKTADL 227 (510)
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecChHHc
Confidence 99999999999999999999999998864 46899999999998865 999999999999988887665
|
|
| >PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-48 Score=469.52 Aligned_cols=209 Identities=22% Similarity=0.372 Sum_probs=173.4
Q ss_pred EEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCH-HHHhcceEE
Q 000984 386 LRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQL-QWIRKKIGL 464 (1198)
Q Consensus 386 ~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~-~~~r~~i~~ 464 (1198)
++|++++|++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. +.+|++++|
T Consensus 1 ~~nl~~~~~~---~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~ 77 (491)
T PRK10982 1 MSNISKSFPG---VKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKEALENGISM 77 (491)
T ss_pred CCceEEEeCC---EEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCEECCCCCHHHHHhCCEEE
Confidence 3689999963 469999999999999999999999999999999999999999999999999876654 345778999
Q ss_pred EcCCCCCC-cccHHHHHhcCCCC-----CCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhhc
Q 000984 465 VSQEPVLF-TGSIKDNIAYGKDD-----ATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAIL 538 (1198)
Q Consensus 465 v~Q~~~l~-~~ti~~Ni~~~~~~-----~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal~ 538 (1198)
++|++.++ ..|++||+.++... .+.++..+ .+.+.++.+ |++........+||||||||++||||++
T Consensus 78 v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LSgGq~qrv~lA~al~ 150 (491)
T PRK10982 78 VHQELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMYR-----DTKAIFDEL--DIDIDPRAKVATLSVSQMQMIEIAKAFS 150 (491)
T ss_pred EecccccccCCCHHHHhhcccccccccccCHHHHHH-----HHHHHHHHc--CCCCCccCchhhCCHHHHHHHHHHHHHH
Confidence 99999876 46999999876321 12222111 122344444 5555556677889999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh-CCCeEEEEecCcchhhc-cCEEEEEeCCEEEEecCh
Q 000984 539 KDPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTH 604 (1198)
Q Consensus 539 ~~~~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~ 604 (1198)
++|++|||||||++||+.+.+.+.+.|+++. +++|+|++||+++.+.. ||+|++|++|++++.|++
T Consensus 151 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvii~tH~~~~~~~~~d~i~~l~~G~i~~~~~~ 218 (491)
T PRK10982 151 YNAKIVIMDEPTSSLTEKEVNHLFTIIRKLKERGCGIVYISHKMEEIFQLCDEITILRDGQWIATQPL 218 (491)
T ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEeecCh
Confidence 9999999999999999999999999998864 46899999999998865 999999999999876654
|
|
| >PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-45 Score=454.54 Aligned_cols=429 Identities=17% Similarity=0.157 Sum_probs=328.1
Q ss_pred hcCChhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhcCCCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000984 713 LNKPEIPVILAGTIAAMANGVILPI-YGLLISSVIETFFKPPHELKKDSRFWALIYLALGAGSFLLSPAQSYFFAVAGNK 791 (1198)
Q Consensus 713 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 (1198)
+.+++++.++.++++.++..++... ++++...+++..... .. . ...++++.++..++.+++.++....+.+
T Consensus 7 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~lid~~~~~----~~--~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (547)
T PRK10522 7 VWRQYRWPFISVMALSLASAALGIGLIAFINQRLIETADTS----LL--V--LPEFLGLLLLLMAVTLGSQLALTTLGHH 78 (547)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc----ch--H--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566666666666666655554 355666666643210 00 1 1112222233345667888889999999
Q ss_pred HHHHHHHHHHHHHHhCcccccccCCCChhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 000984 792 LIQRIRSMCFEKVIHMEVSWFDEPEHSSGAIGARLSADAASVRALVGDALARIVQNISTAAAGLIIAFTASWQLALIILV 871 (1198)
Q Consensus 792 ~~~~Lr~~l~~~ll~~p~~fFd~~~~~~G~i~~r~s~D~~~i~~~l~~~l~~~i~~~~~~i~~li~~~~~~~~l~l~~l~ 871 (1198)
+..++|.+++++++++|++||+ ++++|++++|+++|++.+...+. .++.++..++.+++.++++++++|++++++++
T Consensus 79 ~~~~lR~~l~~~ll~~~~~~~~--~~~~g~~lsrl~~dv~~i~~~~~-~l~~~~~~~~~~i~~~~~l~~~~~~l~li~l~ 155 (547)
T PRK10522 79 FVYRLRSEFIKRILDTHVERIE--QLGSASLLASLTSDVRNITIAFV-RLPELVQGIILTLGSAAYLAWLSPKMLLVTAI 155 (547)
T ss_pred HHHHHHHHHHHHHHhCCHHHHh--ccCccchHHHHHhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 9999999999999999999999 58899999999999999998766 47788888899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhchhHHHHHhcch---HHHHHHHHHHhhhHHHHhHHHHHHHhh
Q 000984 872 MLPLIGVSGYTQMKFMKGFSADAKMKYEEASQVANDAVGSIRTVASFCAE---EKVMQLYKKKCEAPMKTGIRQGMVSGG 948 (1198)
Q Consensus 872 ~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIraf~~e---~~~~~~~~~~~~~~~~~~~~~~~~~~~ 948 (1198)
++|+.+++.++..++.++..++.++..++.++.+.|.++|+++++ ++.+ +.+.++|.+..++..+...+.......
T Consensus 156 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~i~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (547)
T PRK10522 156 WMAVTIWGGFVLVARVYKHMATLRETEDKLYNDYQTVLEGRKELT-LNRERAEYVFENEYEPDAQEYRHHIIRADTFHLS 234 (547)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhh-ccHHHHHHHHHHHHhHHHHHHHhhhHHHHHHHHH
Confidence 999998888888888888888888899999999999999999995 5544 456788888888777766665544443
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhcCCCCCCC
Q 000984 949 GFGASFFLLFAFYAASFYAGARLVEDGKATFSDVFKVFFSLTMTAIGISQSSSFSSDSNKAKSAAASIFAIIDRESKIDP 1028 (1198)
Q Consensus 949 ~~~~~~~~~~~~~~~~~~~g~~l~~~g~~t~g~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~~~ 1028 (1198)
...+...+......+.++++..+ +..+.+.+..+..+......|+..+......++.+..+.+|+.++++.+++.+.
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~l~~~~~~~~~ 311 (547)
T PRK10522 235 AVNWSNIMMLGAIGLVFYMANSL---GWADTNVAATYSLTLLFLRTPLLSAVGALPTLLSAQVAFNKLNKLALAPYKAEF 311 (547)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh---hcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccc
Confidence 33332222222222233333322 112333344444444456689999999999999999999999998765432211
Q ss_pred CCCCCCcccCCcccEEEeeeeEECCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcc
Q 000984 1029 SDESGTILEDVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVE 1108 (1198)
Q Consensus 1029 ~~~~~~~~~~~~G~I~f~nVsf~Y~~~~~~~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~d 1108 (1198)
.. .. ..+..+.|+|+||+|+|+++ +++|+|+||+|+|||++|||||||||||||+++|+|+|+|++|+|++||+|
T Consensus 312 ~~--~~-~~~~~~~i~~~~v~f~y~~~--~~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~ 386 (547)
T PRK10522 312 PR--PQ-AFPDWQTLELRNVTFAYQDN--GFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKP 386 (547)
T ss_pred cc--cc-ccCcCceEEEEEEEEEeCCC--CeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEE
Confidence 11 11 11123579999999999742 369999999999999999999999999999999999999999999999999
Q ss_pred cCCCChHHHHhhcceeccccccccccHHHHHhcCCCCCCCHHHHHHHHHHcchHHHHH
Q 000984 1109 IQKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFIC 1166 (1198)
Q Consensus 1109 I~~i~l~~LR~~IsiV~Qdp~LF~gTIreNI~~g~~~~~tdeei~~Al~~A~l~dfI~ 1166 (1198)
+++++.+++|++|++|||||+||+||+++| + + ++++++++++++.+++++++.
T Consensus 387 ~~~~~~~~~~~~i~~v~q~~~lf~~ti~~n---~-~-~~~~~~~~~~~~~~~l~~~~~ 439 (547)
T PRK10522 387 VTAEQPEDYRKLFSAVFTDFHLFDQLLGPE---G-K-PANPALVEKWLERLKMAHKLE 439 (547)
T ss_pred CCCCCHHHHhhheEEEecChhHHHHhhccc---c-C-chHHHHHHHHHHHcCCchhhh
Confidence 999999999999999999999999999999 4 2 678999999999999998875
|
|
| >COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-48 Score=390.89 Aligned_cols=216 Identities=31% Similarity=0.546 Sum_probs=186.8
Q ss_pred cEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecC-CcCHHHHhcc
Q 000984 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLK-EFQLQWIRKK 461 (1198)
Q Consensus 383 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~-~~~~~~~r~~ 461 (1198)
.|+++|++.+|+. ..+|+|||++|++||.++|+||||||||||+++|.|+-+|++|+|.+||.++. +.+...+|++
T Consensus 2 mi~i~~l~K~fg~---~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~R~~ 78 (240)
T COG1126 2 MIEIKNLSKSFGD---KEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRRK 78 (240)
T ss_pred eEEEEeeeEEeCC---eEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhhHHHHHHh
Confidence 4899999999963 46999999999999999999999999999999999999999999999998774 3378899999
Q ss_pred eEEEcCCCCCC-cccHHHHHhcCCCC---CCHH----HHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhH
Q 000984 462 IGLVSQEPVLF-TGSIKDNIAYGKDD---ATTE----EIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAI 533 (1198)
Q Consensus 462 i~~v~Q~~~l~-~~ti~~Ni~~~~~~---~~~~----~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~l 533 (1198)
+|+|+|+..|| .-|+.||+.++.-. .+.+ ...+.++++ |+.........+||||||||+||
T Consensus 79 vGmVFQ~fnLFPHlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~V-----------GL~~ka~~yP~qLSGGQqQRVAI 147 (240)
T COG1126 79 VGMVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKV-----------GLADKADAYPAQLSGGQQQRVAI 147 (240)
T ss_pred cCeecccccccccchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHc-----------CchhhhhhCccccCcHHHHHHHH
Confidence 99999999999 57999999976311 1222 223333444 44444455557899999999999
Q ss_pred HHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh-CCCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChhhHhcCC
Q 000984 534 ARAILKDPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVEDP 611 (1198)
Q Consensus 534 ARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~ 611 (1198)
||||..+|+++|+|||||||||+....+.+.++++. .+.|.|+|||.+.+.+. ||||+.||+|+|+|+|+|+++..++
T Consensus 148 ARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM~FAr~VadrviFmd~G~iie~g~p~~~f~~p 227 (240)
T COG1126 148 ARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMGFAREVADRVIFMDQGKIIEEGPPEEFFDNP 227 (240)
T ss_pred HHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechhHHHHHhhheEEEeeCCEEEEecCHHHHhcCC
Confidence 999999999999999999999999999999998876 46899999999999987 8999999999999999999999875
Q ss_pred C
Q 000984 612 E 612 (1198)
Q Consensus 612 ~ 612 (1198)
.
T Consensus 228 ~ 228 (240)
T COG1126 228 K 228 (240)
T ss_pred C
Confidence 4
|
|
| >COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-45 Score=407.94 Aligned_cols=434 Identities=19% Similarity=0.207 Sum_probs=369.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc
Q 000984 729 MANGVILPIYGLLISSVIETFFKPPHELKKDSRFWALIYLALGAGSFLLSPAQSYFFAVAGNKLIQRIRSMCFEKVIHME 808 (1198)
Q Consensus 729 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~~l~~~ll~~p 808 (1198)
.+..++....++++-++.|....+... .......++.+++.++..++.+++.+.+.+++.++-..|..++|....++|
T Consensus 33 ~~INiL~L~~~lyMLQVyDRVL~S~s~--~TLv~Ltvlal~ly~~~glLd~iR~~~l~Rig~~lD~~L~~~v~~a~~~~~ 110 (580)
T COG4618 33 AVINLLALTGPLYMLQVYDRVLPSRSV--PTLVMLTVLALGLYAFQGLLDAIRSRVLVRIGERLDRQLNGPVFAASFSAP 110 (580)
T ss_pred HHHHHHHHhhhHHHHHHHhhhccCCCc--chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHhhH
Confidence 333444555666677777877653221 112222333344556677888899999999999999999999999998777
Q ss_pred ccccccCCCChhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000984 809 VSWFDEPEHSSGAIGARLSADAASVRALVGDALARIVQNISTAAAGLIIAFTASWQLALIILVMLPLIGVSGYTQMKFMK 888 (1198)
Q Consensus 809 ~~fFd~~~~~~G~i~~r~s~D~~~i~~~l~~~l~~~i~~~~~~i~~li~~~~~~~~l~l~~l~~~pl~~~~~~~~~~~~~ 888 (1198)
..--. .|+=..-+ +|.++++.|+...-...+...-..-+.+.++|.+++++.++.++...+++.+.++-.+..+
T Consensus 111 l~~~~-----~g~~~Q~L-rDL~qvR~Fltg~g~~A~fDaPW~P~yl~v~fl~Hp~lG~~a~~ga~iLv~la~ln~~~t~ 184 (580)
T COG4618 111 LLRRG-----SGDGLQPL-RDLDQVRQFLTGTGLTAFFDAPWMPLYLAVIFLFHPWLGLIALAGAIILVVLALLNERATR 184 (580)
T ss_pred HhhcC-----CCccccch-hhHHHHHHHHcCCCcchhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 76532 33222222 4999999999886666666666666677788889999999999999999988888888888
Q ss_pred hhHHHHHHHHHHHHHHHHHHhchhHHHHHhcchHHHHHHHHHHhhhHHHHhHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 000984 889 GFSADAKMKYEEASQVANDAVGSIRTVASFCAEEKVMQLYKKKCEAPMKTGIRQGMVSGGGFGASFFLLFAFYAASFYAG 968 (1198)
Q Consensus 889 ~~~~~~~~~~~~~~~~~~E~l~gi~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 968 (1198)
+..++..+.....+.+..-+..|..+|++.|......++|.+....+.....+..-..+.+.+++..+-++....++.+|
T Consensus 185 ~p~~eA~~~~~~~~~~~~a~~RNAEvi~AMGM~~~l~~rW~~~~~~~L~~~~~asd~~~~~~~~Sr~~Rm~lQs~iLg~G 264 (580)
T COG4618 185 KPLKEASEASIRANQLADATLRNAEVIEAMGMLGNLAKRWGRFNAAYLSAQERASDRNGAFGALSRALRMALQSAVLGLG 264 (580)
T ss_pred ccHHHHHHHHHHHHHHHHHHhhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 88888888888889999999999999999999999999999999999998888888888888999999999999999999
Q ss_pred HHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCcccCCcccEEEeee
Q 000984 969 ARLVEDGKATFSDVFKVFFSLTMTAIGISQSSSFSSDSNKAKSAAASIFAIIDRESKIDPSDESGTILEDVKGEIELHHV 1048 (1198)
Q Consensus 969 ~~l~~~g~~t~g~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~~~~~~G~I~f~nV 1048 (1198)
++++.+|++|.|.+++....+.....|+......+..+..+..+..|+.+++...|+..+ .-+.|..+|.+..++|
T Consensus 265 A~Lvi~ge~t~G~mIA~SIl~gRaLaPid~aI~~Wkq~~~Ar~s~~Rl~~lL~~~p~~~~----~m~LP~P~g~L~Ve~l 340 (580)
T COG4618 265 AWLVIKGEITPGMMIAGSILSGRALAPIDLAIANWKQFVAARQSYKRLNELLAELPAAAE----RMPLPAPQGALSVERL 340 (580)
T ss_pred eeeEEcCcCCcchhhHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHhCccccC----CCCCCCCCceeeEeee
Confidence 999999999999999999999999999999999999999999999999999987765432 1233445789999999
Q ss_pred eEECCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHhhcceecccc
Q 000984 1049 SFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMGLVSQEP 1128 (1198)
Q Consensus 1049 sf~Y~~~~~~~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~~i~l~~LR~~IsiV~Qdp 1128 (1198)
++.=|+. ++|+|+||||+++|||-+|||||||||||||+++|.+.|.|.+|.|++||-|+++++.+.|=++|||.|||.
T Consensus 341 ~~~PPg~-~~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~p~~G~VRLDga~l~qWd~e~lG~hiGYLPQdV 419 (580)
T COG4618 341 TAAPPGQ-KKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQWDREQLGRHIGYLPQDV 419 (580)
T ss_pred eecCCCC-CCcceecceeEecCCceEEEECCCCccHHHHHHHHHcccccCCCcEEecchhhhcCCHHHhccccCcCcccc
Confidence 9976654 568999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccHHHHHh-cCCCCCCCHHHHHHHHHHcchHHHHHhccccccceee
Q 000984 1129 VLFNDTIRANIA-YGKGGDATEAEIQAASEMANAHKFICSLQQVRTSRLL 1177 (1198)
Q Consensus 1129 ~LF~gTIreNI~-~g~~~~~tdeei~~Al~~A~l~dfI~~LP~g~dt~v~ 1177 (1198)
-||+|||+|||. |+ +++++|.|.+|++.|+.||.|.+||+||||.|.
T Consensus 420 eLF~GTIaeNIaRf~--~~~d~~kIieAA~lAgvHelIl~lP~GYdT~iG 467 (580)
T COG4618 420 ELFDGTIAENIARFG--EEADPEKVIEAARLAGVHELILRLPQGYDTRIG 467 (580)
T ss_pred eecCCcHHHHHHhcc--ccCCHHHHHHHHHHcChHHHHHhCcCCccCccC
Confidence 999999999996 54 378999999999999999999999999999984
|
|
| >PRK15064 ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-46 Score=459.70 Aligned_cols=208 Identities=24% Similarity=0.430 Sum_probs=167.4
Q ss_pred EEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcceE
Q 000984 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIG 463 (1198)
Q Consensus 384 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~ 463 (1198)
|+++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|. .+++
T Consensus 2 l~i~~ls~~~~~---~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~i~ 67 (530)
T PRK15064 2 LSTANITMQFGA---KPLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLEPSAGNVSLDPN-----------ERLG 67 (530)
T ss_pred EEEEEEEEEeCC---cEeEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCC-----------CEEE
Confidence 789999999963 46999999999999999999999999999999999999999999999872 4699
Q ss_pred EEcCCCCCCc-ccHHHHHhcCCCCC----------------CHH---HHHHH----------HHHhcHHHHHHhCCCCcc
Q 000984 464 LVSQEPVLFT-GSIKDNIAYGKDDA----------------TTE---EIRVA----------TELANAAKFIDKLPQGID 513 (1198)
Q Consensus 464 ~v~Q~~~l~~-~ti~~Ni~~~~~~~----------------~~~---~~~~~----------~~~~~~~~~i~~l~~g~~ 513 (1198)
|++|++.++. .|++||+.++.... ..+ .+.+. .....+.+.++.+ |++
T Consensus 68 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--gl~ 145 (530)
T PRK15064 68 KLRQDQFAFEEFTVLDTVIMGHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGV--GIP 145 (530)
T ss_pred EEeccCCcCCCCcHHHHHHHhhHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhC--CCC
Confidence 9999998775 59999998753100 000 00000 0011233444444 554
Q ss_pred chh-cCCCCCCChHHHHHHhHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhCCCeEEEEecCcchhhc-cCEEE
Q 000984 514 TLV-GEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRN-ADMIA 591 (1198)
Q Consensus 514 t~v-~~~g~~lSgGqkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~-~d~i~ 591 (1198)
... .....+||||||||++|||||+.+|++|||||||++||+++...+.+.|.+ .++|+|+|||+++.+.. ||+|+
T Consensus 146 ~~~~~~~~~~LSgGq~qrv~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~--~~~tiiivsHd~~~~~~~~d~i~ 223 (530)
T PRK15064 146 EEQHYGLMSEVAPGWKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLNE--RNSTMIIISHDRHFLNSVCTHMA 223 (530)
T ss_pred hhHhcCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHh--CCCeEEEEeCCHHHHHhhcceEE
Confidence 322 345678999999999999999999999999999999999999999998875 47899999999999865 99999
Q ss_pred EEeCCEEE-EecChhhHhc
Q 000984 592 VIHRGKIV-EKGTHSKLVE 609 (1198)
Q Consensus 592 ~l~~G~i~-~~g~~~~l~~ 609 (1198)
+|++|+++ +.|+++++++
T Consensus 224 ~l~~g~i~~~~g~~~~~~~ 242 (530)
T PRK15064 224 DLDYGELRVYPGNYDEYMT 242 (530)
T ss_pred EEeCCEEEEecCCHHHHHH
Confidence 99999994 7888887654
|
|
| >PRK11819 putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-46 Score=459.26 Aligned_cols=209 Identities=29% Similarity=0.407 Sum_probs=167.5
Q ss_pred cEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcce
Q 000984 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKI 462 (1198)
Q Consensus 383 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i 462 (1198)
.|+++|++++|+. ++++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+++ +.++
T Consensus 6 ~l~i~~l~~~y~~--~~~il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~p~~G~i~~~~-----------~~~i 72 (556)
T PRK11819 6 IYTMNRVSKVVPP--KKQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFEGEARPAP-----------GIKV 72 (556)
T ss_pred EEEEeeEEEEeCC--CCeeeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecC-----------CCEE
Confidence 5899999999962 24699999999999999999999999999999999999999999999975 2479
Q ss_pred EEEcCCCCCCc-ccHHHHHhcCCCCC----------------CH----------HHHHHHHH-------HhcHHHHHHhC
Q 000984 463 GLVSQEPVLFT-GSIKDNIAYGKDDA----------------TT----------EEIRVATE-------LANAAKFIDKL 508 (1198)
Q Consensus 463 ~~v~Q~~~l~~-~ti~~Ni~~~~~~~----------------~~----------~~~~~~~~-------~~~~~~~i~~l 508 (1198)
+||+|+|.++. .|++||+.++.... .. .++.+.++ ...+.+.++.+
T Consensus 73 ~~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 152 (556)
T PRK11819 73 GYLPQEPQLDPEKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDAL 152 (556)
T ss_pred EEEecCCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHHHhC
Confidence 99999999886 59999998753100 00 00111111 01122233333
Q ss_pred CCCccchhcCCCCCCChHHHHHHhHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhCCCeEEEEecCcchhhc-c
Q 000984 509 PQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRN-A 587 (1198)
Q Consensus 509 ~~g~~t~v~~~g~~lSgGqkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~-~ 587 (1198)
|++ .......+||||||||++||||++.+|++|||||||++||+.+...+.+.++++ +.|+|+|||+++.+.. |
T Consensus 153 --gl~-~~~~~~~~LSgGqkqrv~la~al~~~p~vlLLDEPt~~LD~~~~~~l~~~L~~~--~~tviiisHd~~~~~~~~ 227 (556)
T PRK11819 153 --RCP-PWDAKVTKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLHDY--PGTVVAVTHDRYFLDNVA 227 (556)
T ss_pred --CCC-cccCchhhcCHHHHHHHHHHHHHhCCCCEEEEcCCCCcCChHHHHHHHHHHHhC--CCeEEEEeCCHHHHHhhc
Confidence 342 235566789999999999999999999999999999999999999999999876 3699999999999876 9
Q ss_pred CEEEEEeCCEEE-EecChhhHhc
Q 000984 588 DMIAVIHRGKIV-EKGTHSKLVE 609 (1198)
Q Consensus 588 d~i~~l~~G~i~-~~g~~~~l~~ 609 (1198)
|+|++|++|+++ +.|+++++.+
T Consensus 228 d~i~~l~~g~i~~~~g~~~~~~~ 250 (556)
T PRK11819 228 GWILELDRGRGIPWEGNYSSWLE 250 (556)
T ss_pred CeEEEEeCCEEEEecCCHHHHHH
Confidence 999999999986 7788776643
|
|
| >TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-44 Score=450.58 Aligned_cols=452 Identities=11% Similarity=0.065 Sum_probs=370.7
Q ss_pred hHhhhhhcCChhH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCch-hhhhhHHHHHHHHHHHHHHHHHHHH
Q 000984 707 TRRLAYLNKPEIP-----VILAGTIAAMANGVILPIYGLLISSVIETFFKPPHE-LKKDSRFWALIYLALGAGSFLLSPA 780 (1198)
Q Consensus 707 ~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 780 (1198)
+++++.+.+|++. .+++.+++.++...+....+++.+.+++........ .......++++++++.++..+..++
T Consensus 79 ~~~l~~~~~p~~~~~~~~~l~~~~~~~~~~t~~~l~~~~l~~~iid~l~~~~~~~f~~~l~~~~l~~~~~~~~~~~~~~~ 158 (659)
T TIGR00954 79 LDFLLKILIPRVFCKETGLLILIAFLLVSRTYLSVYVATLDGQIESSIVRRSPRNFAWILFKWFLIAPPASFINSAIKYL 158 (659)
T ss_pred HHHHHHHHcCcccchHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666777765 566677777777888888899999999876532111 1111223444455566677778888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCcccccccCCCChhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000984 781 QSYFFAVAGNKLIQRIRSMCFEKVIHMEVSWFDEPEHSSGAIGARLSADAASVRALVGDALARIVQNISTAAAGLIIAFT 860 (1198)
Q Consensus 781 ~~~~~~~~~~~~~~~Lr~~l~~~ll~~p~~fFd~~~~~~G~i~~r~s~D~~~i~~~l~~~l~~~i~~~~~~i~~li~~~~ 860 (1198)
..++......++..++|++.+++....++.||| +++|++++|+++|++.+.+.+...+..++..++.+++.+++++.
T Consensus 159 ~~~~~~~~r~~l~~~l~~~~~~~~~~~~~~~~d---~~~g~~~srlt~Dv~~i~~~~~~~~~~l~~~~~~ii~~~~~L~~ 235 (659)
T TIGR00954 159 LKELKLRFRVRLTRYLYSKYLSGFTFYKVSNLD---SRIQNPDQLLTQDVEKFCDSVVELYSNLTKPILDVILYSFKLLT 235 (659)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCceEEeccCC---CCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888899999999999999999999999999999 36899999999999999999999999999999999988888876
Q ss_pred -hhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhchhHHHHHhcchHHHHHHHHHHhhhHHHHh
Q 000984 861 -ASWQLALIILVMLPLIGVSGYTQMKFMKGFSADAKMKYEEASQVANDAVGSIRTVASFCAEEKVMQLYKKKCEAPMKTG 939 (1198)
Q Consensus 861 -~~~~l~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIraf~~e~~~~~~~~~~~~~~~~~~ 939 (1198)
++|.+++++++.+|+.+++..++.+++.+..++.++..++..+.+.|.++|+++||+|+.|+.+.++|.+..++..+..
T Consensus 236 ~~~~~l~l~~l~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~I~~~~~e~~e~~~~~~~~~~l~~~~ 315 (659)
T TIGR00954 236 ALGSVGPAGLFAYLFATGVVLTKLRPPIGKLTVEEQALEGEYRYVHSRLIMNSEEIAFYQGNKVEKETVMSSFYRLVEHL 315 (659)
T ss_pred hcchHHHHHHHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhCCHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhHHHHHHHHHHH--HHHHHHHHHHHHHh-c----CCcCHHHHHH-HHHH---HHHHHHHHHHHhhhhhHHHH
Q 000984 940 IRQGMVSGGGFGASFFLLFA--FYAASFYAGARLVE-D----GKATFSDVFK-VFFS---LTMTAIGISQSSSFSSDSNK 1008 (1198)
Q Consensus 940 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~~l~~-~----g~~t~g~l~~-~~~~---~~~~~~~l~~~~~~~~~~~~ 1008 (1198)
.+.....+...++..++... ..++.++.|...+. . |.+|.|.+++ +..+ +..+..|+..+......+++
T Consensus 316 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~~~~~~~~~g~~t~g~~~~~f~~~~~~~~~l~~~~~~l~~~~~~i~~ 395 (659)
T TIGR00954 316 NLIIKFRFSYGFLDNIVAKYTWSAVGLVAVSIPIFDKTHPAFLEMSEEELMQEFYNNGRLLLKAADALGRLMLAGRDMTR 395 (659)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99988888888777776543 22333333443332 2 7889888776 4444 55668899999999999999
Q ss_pred HHHHHHHHHHHhcCCCCCCC------C-CC--CC-------------CcccCCcccEEEeeeeEECCCCCCccccccceE
Q 000984 1009 AKSAAASIFAIIDRESKIDP------S-DE--SG-------------TILEDVKGEIELHHVSFKYPSRPDVQVFRDLNL 1066 (1198)
Q Consensus 1009 ~~~s~~ri~~~l~~~~~~~~------~-~~--~~-------------~~~~~~~G~I~f~nVsf~Y~~~~~~~vL~~is~ 1066 (1198)
+.++.+|++++++.+++... . ++ .. .......+.|+|+||+|+|+++ .++|+|+||
T Consensus 396 ~~~~~~Ri~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nv~~~~~~~--~~il~~isl 473 (659)
T TIGR00954 396 LAGFTARVDTLLQVLDDVKSGNFKRPRVEEIESGREGGRNSNLVPGRGIVEYQDNGIKFENIPLVTPNG--DVLIESLSF 473 (659)
T ss_pred HHHHHHHHHHHHHHHHHHhcccccccccccccccccccccccccccccccccCCCeEEEEeeEEECCCC--CeeeecceE
Confidence 99999999999975433210 0 00 00 0011134679999999999742 369999999
Q ss_pred EeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHhhcceeccccccccccHHHHHhcCCC--
Q 000984 1067 KIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKG-- 1144 (1198)
Q Consensus 1067 ~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~~i~l~~LR~~IsiV~Qdp~LF~gTIreNI~~g~~-- 1144 (1198)
+|++||++|||||||||||||+++|.|+|+|++|+|.+|+ |++|++|||+|++|++|++|||.++..
T Consensus 474 ~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~~~~G~i~~~~-----------~~~i~~v~Q~~~l~~~tv~eni~~~~~~~ 542 (659)
T TIGR00954 474 EVPSGNHLLICGPNGCGKSSLFRILGELWPVYGGRLTKPA-----------KGKLFYVPQRPYMTLGTLRDQIIYPDSSE 542 (659)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEeecC-----------CCcEEEECCCCCCCCcCHHHHHhcCCChh
Confidence 9999999999999999999999999999999999999874 678999999999999999999998731
Q ss_pred ----CCCCHHHHHHHHHHcchHHHHHhccccccce
Q 000984 1145 ----GDATEAEIQAASEMANAHKFICSLQQVRTSR 1175 (1198)
Q Consensus 1145 ----~~~tdeei~~Al~~A~l~dfI~~LP~g~dt~ 1175 (1198)
++.++++++++++.+++++++.+ |.||||.
T Consensus 543 ~~~~~~~~~~~i~~~l~~~~l~~~~~~-~~g~~~~ 576 (659)
T TIGR00954 543 DMKRRGLSDKDLEQILDNVQLTHILER-EGGWSAV 576 (659)
T ss_pred hhhccCCCHHHHHHHHHHcCCHHHHhh-cCCcccc
Confidence 24678999999999999999988 9999996
|
|
| >TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-46 Score=455.24 Aligned_cols=209 Identities=29% Similarity=0.424 Sum_probs=168.8
Q ss_pred cEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcce
Q 000984 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKI 462 (1198)
Q Consensus 383 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i 462 (1198)
.|+++|++++|+. ++++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+++ +.+|
T Consensus 4 ~i~~~nls~~~~~--~~~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~p~~G~i~~~~-----------~~~i 70 (552)
T TIGR03719 4 IYTMNRVSKVVPP--KKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEARPAP-----------GIKV 70 (552)
T ss_pred EEEEeeEEEecCC--CCeeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecC-----------CCEE
Confidence 4899999999962 24699999999999999999999999999999999999999999999975 2479
Q ss_pred EEEcCCCCCCc-ccHHHHHhcCCCC-----------------CCH---------HHHHHHHHHhcH-------HHHHHhC
Q 000984 463 GLVSQEPVLFT-GSIKDNIAYGKDD-----------------ATT---------EEIRVATELANA-------AKFIDKL 508 (1198)
Q Consensus 463 ~~v~Q~~~l~~-~ti~~Ni~~~~~~-----------------~~~---------~~~~~~~~~~~~-------~~~i~~l 508 (1198)
+|++|+|+++. .|++||+.++... ..+ .++.++++.++. .+.+..+
T Consensus 71 ~~v~Q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 150 (552)
T TIGR03719 71 GYLPQEPQLDPTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDAL 150 (552)
T ss_pred EEEeccCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHhhC
Confidence 99999999885 5999999875311 001 122222322221 2233333
Q ss_pred CCCccchhcCCCCCCChHHHHHHhHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhCCCeEEEEecCcchhhc-c
Q 000984 509 PQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRN-A 587 (1198)
Q Consensus 509 ~~g~~t~v~~~g~~lSgGqkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~-~ 587 (1198)
|++ .......+||||||||++||||++.+|++|||||||++||+++...+.+.|++. ++|+|+|||+++.+.. |
T Consensus 151 --~l~-~~~~~~~~LSgGqkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~~L~~~--~~tvIiisHd~~~~~~~~ 225 (552)
T TIGR03719 151 --RCP-PWDADVTKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQEY--PGTVVAVTHDRYFLDNVA 225 (552)
T ss_pred --CCC-cccCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHHHHHhC--CCeEEEEeCCHHHHHhhc
Confidence 332 135566789999999999999999999999999999999999999999999875 3699999999999876 8
Q ss_pred CEEEEEeCCEEE-EecChhhHhc
Q 000984 588 DMIAVIHRGKIV-EKGTHSKLVE 609 (1198)
Q Consensus 588 d~i~~l~~G~i~-~~g~~~~l~~ 609 (1198)
|+|++|++|+++ ..|+++++.+
T Consensus 226 d~v~~l~~g~i~~~~g~~~~~~~ 248 (552)
T TIGR03719 226 GWILELDRGRGIPWEGNYSSWLE 248 (552)
T ss_pred CeEEEEECCEEEEecCCHHHHHH
Confidence 999999999976 6788777653
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. |
| >PRK14257 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-46 Score=424.92 Aligned_cols=227 Identities=30% Similarity=0.491 Sum_probs=198.7
Q ss_pred CCCcccEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCC-----CCCCeEEECCeecC-
Q 000984 378 DDIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYD-----PQAGEVLIDGINLK- 451 (1198)
Q Consensus 378 ~~~~g~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~-----~~~G~i~i~g~~~~- 451 (1198)
++..+.|+++|++++|+.. .+++|+|+||+|++||+++|+||||||||||+++|+|+++ |.+|+|.+||+++.
T Consensus 75 ~~~~~~i~~~nls~~y~~~-~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~ 153 (329)
T PRK14257 75 FNHANVFEIRNFNFWYMNR-TKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRS 153 (329)
T ss_pred CCcCceEEEEeeEEEecCC-CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccc
Confidence 4456789999999999643 3579999999999999999999999999999999999997 57999999999997
Q ss_pred -CcCHHHHhcceEEEcCCCCCCcccHHHHHhcCCC--CCCHHHH-----HHHHHHhcHHHHHHhCCCCccchhcCCCCCC
Q 000984 452 -EFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKD--DATTEEI-----RVATELANAAKFIDKLPQGIDTLVGEHGTQL 523 (1198)
Q Consensus 452 -~~~~~~~r~~i~~v~Q~~~l~~~ti~~Ni~~~~~--~~~~~~~-----~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~l 523 (1198)
..+...+|++++||||+||+|++|++|||.|+.. ..++++. ..+++.++ +++++++.++++|.+|
T Consensus 154 ~~~~~~~lr~~i~~v~q~~~~~~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~~-------L~~~l~~~~~~~~~~L 226 (329)
T PRK14257 154 KKISSLELRTRIGMVFQKPTPFEMSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAA-------LWDEVKDDLDKAGNAL 226 (329)
T ss_pred cccchHhhhccEEEEecCCccCCCcHHHHHHhHHHhcCCChHHHHHHHHHHHHHHcC-------CcchhhhhhhCCcccC
Confidence 4566788999999999999999999999997632 1333333 33444444 3445678899999999
Q ss_pred ChHHHHHHhHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhCCCeEEEEecCcchhhc-cCEEEEEeCCEEEEec
Q 000984 524 SGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKG 602 (1198)
Q Consensus 524 SgGqkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g 602 (1198)
|||||||+|||||++++|+||||||||++||+++.+.++++|+++.+++|+|+|||+++++.. ||||++|++|+|++.|
T Consensus 227 SgGqkqRl~LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~~~Tii~iTH~l~~i~~~~Driivl~~G~i~e~g 306 (329)
T PRK14257 227 SGGQQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKKKYSIIIVTHSMAQAQRISDETVFFYQGWIEEAG 306 (329)
T ss_pred CHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeC
Confidence 999999999999999999999999999999999999999999998888999999999999987 9999999999999999
Q ss_pred ChhhHhcCCC
Q 000984 603 THSKLVEDPE 612 (1198)
Q Consensus 603 ~~~~l~~~~~ 612 (1198)
+++++...+.
T Consensus 307 ~~~~l~~~~~ 316 (329)
T PRK14257 307 ETKTIFIHPK 316 (329)
T ss_pred CHHHHhcCCC
Confidence 9999987543
|
|
| >COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-46 Score=395.93 Aligned_cols=218 Identities=36% Similarity=0.584 Sum_probs=188.0
Q ss_pred EEEEeEEEEcCCC--CCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCH---HHH
Q 000984 384 IELRDVYFSYPAR--PNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQL---QWI 458 (1198)
Q Consensus 384 i~~~~v~~~y~~~--~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~---~~~ 458 (1198)
|++++|++.|+.. ....+|+|+||+|++||+.||+|+||+|||||++++.++-.|++|+|.+||.|+..++. ..+
T Consensus 2 I~l~~vsK~~~~~~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~Lr~~ 81 (339)
T COG1135 2 IELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELRQL 81 (339)
T ss_pred eEEEeeeeeeccCCCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHHHHHH
Confidence 7999999999752 12568999999999999999999999999999999999999999999999999887764 555
Q ss_pred hcceEEEcCCCCCCc-ccHHHHHhcCCCCC--CH----HHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHH
Q 000984 459 RKKIGLVSQEPVLFT-GSIKDNIAYGKDDA--TT----EEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRI 531 (1198)
Q Consensus 459 r~~i~~v~Q~~~l~~-~ti~~Ni~~~~~~~--~~----~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri 531 (1198)
|++||+++|++.|++ -||.+|+.|+..-. +. .++.+.++.+ |+.-.-+....+||||||||+
T Consensus 82 R~~IGMIFQhFnLLssrTV~~NvA~PLeiag~~k~ei~~RV~elLelV-----------gL~dk~~~yP~qLSGGQKQRV 150 (339)
T COG1135 82 RQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIKQRVAELLELV-----------GLSDKADRYPAQLSGGQKQRV 150 (339)
T ss_pred HhhccEEeccccccccchHHhhhhhhHhhcCCCHHHHHHHHHHHHHHc-----------CChhhhccCchhcCcchhhHH
Confidence 789999999999996 89999999975322 22 2233333333 455555666789999999999
Q ss_pred hHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh--CCCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChhhHh
Q 000984 532 AIARAILKDPRILLLDEATSALDAESEKVVQEALDRIM--VNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLV 608 (1198)
Q Consensus 532 ~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~--~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~ 608 (1198)
+|||||..+|+|||.|||||||||+|.+.|.+.+++.- -+-|+++|||.++.+++ ||||.||++|+++|.|+..++.
T Consensus 151 aIARALa~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITHEm~Vvk~ic~rVavm~~G~lvE~G~v~~vF 230 (339)
T COG1135 151 AIARALANNPKILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHEMEVVKRICDRVAVLDQGRLVEEGTVSEVF 230 (339)
T ss_pred HHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHhhhheEeeCCEEEEeccHHHhh
Confidence 99999999999999999999999999999998887753 37899999999999987 9999999999999999999998
Q ss_pred cCCC
Q 000984 609 EDPE 612 (1198)
Q Consensus 609 ~~~~ 612 (1198)
.++.
T Consensus 231 ~~Pk 234 (339)
T COG1135 231 ANPK 234 (339)
T ss_pred cCcc
Confidence 8764
|
|
| >COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-46 Score=374.45 Aligned_cols=220 Identities=34% Similarity=0.524 Sum_probs=199.3
Q ss_pred ccEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCC-----CeEEECCeecCC--cC
Q 000984 382 GDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQA-----GEVLIDGINLKE--FQ 454 (1198)
Q Consensus 382 g~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~-----G~i~i~g~~~~~--~~ 454 (1198)
..++++|+++.|++ +.+|+|||++|++++.+|++||||||||||++++.|+.+... |+|.++|+|+.+ ++
T Consensus 6 ~~~~~~~l~~yYg~---~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d 82 (253)
T COG1117 6 PAIEVRDLNLYYGD---KHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVD 82 (253)
T ss_pred ceeEecceeEEECc---hhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCC
Confidence 35899999999963 569999999999999999999999999999999999998875 999999999975 58
Q ss_pred HHHHhcceEEEcCCCCCCcccHHHHHhcCCCC------CCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHH
Q 000984 455 LQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDD------ATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQK 528 (1198)
Q Consensus 455 ~~~~r~~i~~v~Q~~~l~~~ti~~Ni~~~~~~------~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqk 528 (1198)
.-.+|++||+|+|.|.-|..||.||+.+|..- .-++.++.+++.+.|++.++. .+.+.+..|||||+
T Consensus 83 ~~~lRr~vGMVFQkPnPFp~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKD-------rL~~sa~~LSGGQQ 155 (253)
T COG1117 83 VVELRRRVGMVFQKPNPFPMSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKD-------RLHKSALGLSGGQQ 155 (253)
T ss_pred HHHHHHHheeeccCCCCCCchHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHH-------HhhCCccCCChhHH
Confidence 99999999999999999999999999998421 123567889999999887743 35677889999999
Q ss_pred HHHhHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhCCCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChhhH
Q 000984 529 QRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKL 607 (1198)
Q Consensus 529 qri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l 607 (1198)
||+||||||.-+|+|||||||||||||.+...|.+.|.++.++-|+|+|||.++...+ +|+...+-.|+++|.|+.+++
T Consensus 156 QRLcIARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk~~yTIviVTHnmqQAaRvSD~taFf~~G~LvE~g~T~~i 235 (253)
T COG1117 156 QRLCIARALAVKPEVLLMDEPTSALDPISTLKIEELITELKKKYTIVIVTHNMQQAARVSDYTAFFYLGELVEFGPTDKI 235 (253)
T ss_pred HHHHHHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHHhccEEEEEeCCHHHHHHHhHhhhhhcccEEEEEcCHHhh
Confidence 9999999999999999999999999999999999999999999999999999998765 899999999999999999999
Q ss_pred hcCC
Q 000984 608 VEDP 611 (1198)
Q Consensus 608 ~~~~ 611 (1198)
..++
T Consensus 236 F~~P 239 (253)
T COG1117 236 FTNP 239 (253)
T ss_pred hcCc
Confidence 8764
|
|
| >PLN03140 ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-44 Score=471.88 Aligned_cols=207 Identities=26% Similarity=0.400 Sum_probs=166.1
Q ss_pred CccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCC---CCeEEECCeecCCcCHHHHhcceEEEcCCCCCC-cc
Q 000984 399 EQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQ---AGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLF-TG 474 (1198)
Q Consensus 399 ~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~---~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~-~~ 474 (1198)
..+|+|+|+.++|||.++|+||||||||||+++|.|.++|. +|+|.+||+++.+... |+.++||+|++.++ ..
T Consensus 178 ~~IL~~vs~~i~~Ge~~~llGpnGSGKSTLLk~LaG~l~~~~~~~G~I~~nG~~~~~~~~---~~~i~yv~Q~d~~~~~l 254 (1470)
T PLN03140 178 LTILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEFVP---RKTSAYISQNDVHVGVM 254 (1470)
T ss_pred ceeccCCeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEechhhcc---cceeEEecccccCCCcC
Confidence 46899999999999999999999999999999999999998 9999999998866542 67899999998777 56
Q ss_pred cHHHHHhcCCC------------CCCHHH----------H---HHHHHHh------cHHHHHHhC--CCCccchhcCC-C
Q 000984 475 SIKDNIAYGKD------------DATTEE----------I---RVATELA------NAAKFIDKL--PQGIDTLVGEH-G 520 (1198)
Q Consensus 475 ti~~Ni~~~~~------------~~~~~~----------~---~~~~~~~------~~~~~i~~l--~~g~~t~v~~~-g 520 (1198)
||+||+.|+.. +.+.++ + .+++... ..++.++.+ .+-.||.+|+. .
T Consensus 255 TV~EtL~f~a~~~~~~~~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg~~~~ 334 (1470)
T PLN03140 255 TVKETLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMI 334 (1470)
T ss_pred cHHHHHHHHHHhcCCCCcccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeCCccc
Confidence 99999987421 001111 0 0111000 012233333 33346778654 4
Q ss_pred CCCChHHHHHHhHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh--CCCeEEEEecCcc--hhhccCEEEEEeCC
Q 000984 521 TQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIM--VNRTTVIVAHRLS--TVRNADMIAVIHRG 596 (1198)
Q Consensus 521 ~~lSgGqkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~--~~~t~i~itH~~~--~~~~~d~i~~l~~G 596 (1198)
..||||||||++|||+++.+|++++|||||++||+.+...+.+.++++. .++|+|+++|++. ....+|+|++|++|
T Consensus 335 rglSGGerkRVsia~aL~~~p~vlllDEPTsGLDs~t~~~i~~~Lr~la~~~g~Tviis~Hqp~~~i~~lfD~vilL~~G 414 (1470)
T PLN03140 335 RGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHLTEATVLMSLLQPAPETFDLFDDIILLSEG 414 (1470)
T ss_pred cCCCcccceeeeehhhhcCCCcEEEEeCCCcCccHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHHhheEEEeeCc
Confidence 6799999999999999999999999999999999999999999999875 3789999999973 44569999999999
Q ss_pred EEEEecChhhHh
Q 000984 597 KIVEKGTHSKLV 608 (1198)
Q Consensus 597 ~i~~~g~~~~l~ 608 (1198)
+++++|+.+++.
T Consensus 415 ~ivy~G~~~~~~ 426 (1470)
T PLN03140 415 QIVYQGPRDHIL 426 (1470)
T ss_pred eEEEeCCHHHHH
Confidence 999999999885
|
|
| >COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-46 Score=382.18 Aligned_cols=223 Identities=35% Similarity=0.570 Sum_probs=190.1
Q ss_pred EEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcceE
Q 000984 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIG 463 (1198)
Q Consensus 384 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~ 463 (1198)
|+|+|||++|. ++.+++|+||+|++||+++++|||||||||++++|.|+++|++|+|.+||.++++++..+||++||
T Consensus 2 I~~~nvsk~y~---~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~~LRr~IG 78 (309)
T COG1125 2 IEFENVSKRYG---NKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRRKIG 78 (309)
T ss_pred ceeeeeehhcC---CceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCHHHHHHhhh
Confidence 79999999996 356999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCCCCCC-cccHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHHhCCCCccc--hhcCCCCCCChHHHHHHhHHHhhc
Q 000984 464 LVSQEPVLF-TGSIKDNIAYGKDD--ATTEEIRVATELANAAKFIDKLPQGIDT--LVGEHGTQLSGGQKQRIAIARAIL 538 (1198)
Q Consensus 464 ~v~Q~~~l~-~~ti~~Ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~t--~v~~~g~~lSgGqkqri~lARal~ 538 (1198)
||-|..-|| +-||.|||.+-..- .+.+++.+- . .+.+..+ |++- ...+....|||||+||+.+||||.
T Consensus 79 YviQqigLFPh~Tv~eNIa~VP~L~~w~k~~i~~r--~---~ELl~lv--gL~p~~~~~RyP~eLSGGQQQRVGv~RALA 151 (309)
T COG1125 79 YVIQQIGLFPHLTVAENIATVPKLLGWDKERIKKR--A---DELLDLV--GLDPSEYADRYPHELSGGQQQRVGVARALA 151 (309)
T ss_pred hhhhhcccCCCccHHHHHHhhhhhcCCCHHHHHHH--H---HHHHHHh--CCCHHHHhhcCchhcCcchhhHHHHHHHHh
Confidence 999999999 58999999863211 123333221 1 1112222 4442 345566889999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhC--CCeEEEEecCcchh-hccCEEEEEeCCEEEEecChhhHhcCCCchh
Q 000984 539 KDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTV-RNADMIAVIHRGKIVEKGTHSKLVEDPEGAY 615 (1198)
Q Consensus 539 ~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~-~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~ 615 (1198)
.+|+|+|+|||++||||-+.+.+|+-+.++.+ ++|+|+|||+++.. +.+|||.+|++|+|++.|+|++++.++...|
T Consensus 152 adP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDidEA~kLadri~vm~~G~i~Q~~~P~~il~~Pan~F 231 (309)
T COG1125 152 ADPPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDIDEALKLADRIAVMDAGEIVQYDTPDEILANPANDF 231 (309)
T ss_pred cCCCeEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHHHHHhhhceEEEecCCeEEEeCCHHHHHhCccHHH
Confidence 99999999999999999999999998877654 79999999999875 5699999999999999999999998865544
Q ss_pred H
Q 000984 616 S 616 (1198)
Q Consensus 616 ~ 616 (1198)
-
T Consensus 232 V 232 (309)
T COG1125 232 V 232 (309)
T ss_pred H
Confidence 3
|
|
| >COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-44 Score=390.50 Aligned_cols=229 Identities=29% Similarity=0.481 Sum_probs=184.5
Q ss_pred cEEEEeEEEEcCCC-CCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCC-----CCCeEEECCeecCCcCHH
Q 000984 383 DIELRDVYFSYPAR-PNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDP-----QAGEVLIDGINLKEFQLQ 456 (1198)
Q Consensus 383 ~i~~~~v~~~y~~~-~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~-----~~G~i~i~g~~~~~~~~~ 456 (1198)
-++++|++..|... ....++++|||+|++||.+|+||.||||||-..+.++|+++. .+|+|.++|.|+-..+..
T Consensus 6 lL~v~nLsV~f~~~~~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~~se~ 85 (534)
T COG4172 6 LLSIRNLSVAFHQEGGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAASER 85 (534)
T ss_pred ceeeeccEEEEecCCcceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhcCCHH
Confidence 37889998887532 235799999999999999999999999999999999999865 379999999999988877
Q ss_pred HHh----cceEEEcCCCCC-Cc--cc----HHHHHhcCCC---CCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCC
Q 000984 457 WIR----KKIGLVSQEPVL-FT--GS----IKDNIAYGKD---DATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQ 522 (1198)
Q Consensus 457 ~~r----~~i~~v~Q~~~l-~~--~t----i~~Ni~~~~~---~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~ 522 (1198)
.+| .+|+.++|+|-- .| -| |.|-|..... ....++..+.++.+++.+- ...+......
T Consensus 86 ~lr~iRG~~I~MIFQEPMtSLNPl~tIg~Qi~E~l~~Hrg~~~~~Ar~r~lelL~~VgI~~p--------~~rl~~yPHe 157 (534)
T COG4172 86 QLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRLHRGLSRAAARARALELLELVGIPEP--------EKRLDAYPHE 157 (534)
T ss_pred HHhhhcccceEEEecccccccCcHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCch--------hhhhhhCCcc
Confidence 776 379999999942 22 13 4444443221 1123445555555554331 2345566778
Q ss_pred CChHHHHHHhHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhC--CCeEEEEecCcchhhc-cCEEEEEeCCEEE
Q 000984 523 LSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRN-ADMIAVIHRGKIV 599 (1198)
Q Consensus 523 lSgGqkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~~-~d~i~~l~~G~i~ 599 (1198)
||||||||+-||.||..+|++||-||||.|||.....+|.+.++++.+ +..+++|||++..+++ ||||+||.+|+++
T Consensus 158 LSGGqRQRVMIAMALan~P~lLIADEPTTALDVtvQaQIL~Ll~~Lq~~~gMa~lfITHDL~iVr~~ADrV~VM~~G~iv 237 (534)
T COG4172 158 LSGGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQAELGMAILFITHDLGIVRKFADRVYVMQHGEIV 237 (534)
T ss_pred cCcchhhHHHHHHHHcCCCCeEeecCCcchhhhhhHHHHHHHHHHHHHHhCcEEEEEeccHHHHHHhhhhEEEEeccEEe
Confidence 999999999999999999999999999999999999999999988753 6899999999999987 9999999999999
Q ss_pred EecChhhHhcCCCchhHHHH
Q 000984 600 EKGTHSKLVEDPEGAYSQLI 619 (1198)
Q Consensus 600 ~~g~~~~l~~~~~~~~~~~~ 619 (1198)
|.|+.+++.+.+...|.+..
T Consensus 238 E~~~t~~lF~~PqHpYTr~L 257 (534)
T COG4172 238 ETGTTETLFAAPQHPYTRKL 257 (534)
T ss_pred ecCcHHHHhhCCCChHHHHH
Confidence 99999999887776666543
|
|
| >PRK10636 putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-43 Score=438.61 Aligned_cols=207 Identities=22% Similarity=0.342 Sum_probs=160.0
Q ss_pred EEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcceE
Q 000984 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIG 463 (1198)
Q Consensus 384 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~ 463 (1198)
|+++|++++|+. +++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.. .++
T Consensus 2 i~i~nls~~~g~---~~~l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~pd~G~I~~~~~~-----------~i~ 67 (638)
T PRK10636 2 IVFSSLQIRRGV---RVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISADGGSYTFPGNW-----------QLA 67 (638)
T ss_pred EEEEEEEEEeCC---ceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCC-----------EEE
Confidence 789999999963 469999999999999999999999999999999999999999999998842 589
Q ss_pred EEcCCCCCCcccHHHHHhcCCCCC--------------CHHHHHHHHH----------HhcHHHHHHhCCCCcc-chhcC
Q 000984 464 LVSQEPVLFTGSIKDNIAYGKDDA--------------TTEEIRVATE----------LANAAKFIDKLPQGID-TLVGE 518 (1198)
Q Consensus 464 ~v~Q~~~l~~~ti~~Ni~~~~~~~--------------~~~~~~~~~~----------~~~~~~~i~~l~~g~~-t~v~~ 518 (1198)
|++|++..+..|+.+.+.-+.... ....+..... ...+.+.+..+ |+. .....
T Consensus 68 ~~~q~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l--gl~~~~~~~ 145 (638)
T PRK10636 68 WVNQETPALPQPALEYVIDGDREYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGL--GFSNEQLER 145 (638)
T ss_pred EEecCCCCCCCCHHHHHHHhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhC--CCCchhhcC
Confidence 999976545556655543211000 0000000000 01122334444 453 23455
Q ss_pred CCCCCChHHHHHHhHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhCCCeEEEEecCcchhhc-cCEEEEEeCCE
Q 000984 519 HGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRN-ADMIAVIHRGK 597 (1198)
Q Consensus 519 ~g~~lSgGqkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~-~d~i~~l~~G~ 597 (1198)
...+||||||||++|||||+.+|++|||||||++||+.+...+.+.+.+. +.|+|+|||+..++.. ||+|++|++|+
T Consensus 146 ~~~~LSgGerqRv~LA~aL~~~P~lLLLDEPtn~LD~~~~~~L~~~L~~~--~~tviivsHd~~~l~~~~d~i~~L~~G~ 223 (638)
T PRK10636 146 PVSDFSGGWRMRLNLAQALICRSDLLLLDEPTNHLDLDAVIWLEKWLKSY--QGTLILISHDRDFLDPIVDKIIHIEQQS 223 (638)
T ss_pred chhhcCHHHHHHHHHHHHHccCCCEEEEcCCCCcCCHHHHHHHHHHHHhC--CCeEEEEeCCHHHHHHhcCEEEEEeCCE
Confidence 66789999999999999999999999999999999999999999988775 5799999999999875 99999999999
Q ss_pred EE-EecChhhHh
Q 000984 598 IV-EKGTHSKLV 608 (1198)
Q Consensus 598 i~-~~g~~~~l~ 608 (1198)
+. ..|+++...
T Consensus 224 i~~~~g~~~~~~ 235 (638)
T PRK10636 224 LFEYTGNYSSFE 235 (638)
T ss_pred EEEecCCHHHHH
Confidence 96 467766554
|
|
| >cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-44 Score=391.76 Aligned_cols=234 Identities=49% Similarity=0.807 Sum_probs=213.1
Q ss_pred EEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcceE
Q 000984 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIG 463 (1198)
Q Consensus 384 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~ 463 (1198)
|+++|++++|+.. .+++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.++...+...+|++++
T Consensus 1 i~~~~l~~~~~~~-~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (237)
T cd03252 1 ITFEHVRFRYKPD-GPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRRQVG 79 (237)
T ss_pred CEEEEEEEecCCC-CccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCeehHhcCHHHHhhcEE
Confidence 4789999999642 356999999999999999999999999999999999999999999999999998888888889999
Q ss_pred EEcCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhhccCCCE
Q 000984 464 LVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRI 543 (1198)
Q Consensus 464 ~v~Q~~~l~~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal~~~~~i 543 (1198)
|++|++++|+.|++||+.++.+....+++...++..++.+.++.+|.|+++..+..+.+||||||||++||||++.+|++
T Consensus 80 ~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~l 159 (237)
T cd03252 80 VVLQENVLFNRSIRDNIALADPGMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPRI 159 (237)
T ss_pred EEcCCchhccchHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHHHHHHHHHHhhCCCE
Confidence 99999999999999999986544456667777787888899999999999999999999999999999999999999999
Q ss_pred EEEeCCCCCCCHHhHHHHHHHHHHHhCCCeEEEEecCcchhhccCEEEEEeCCEEEEecChhhHhcCCCchhHHHH
Q 000984 544 LLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVEDPEGAYSQLI 619 (1198)
Q Consensus 544 lllDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~ 619 (1198)
+||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+..||+|++|++|++++.|+++++..+ .+.|..+.
T Consensus 160 lllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~-~~~~~~~~ 234 (237)
T cd03252 160 LIFDEATSALDYESEHAIMRNMHDICAGRTVIIIAHRLSTVKNADRIIVMEKGRIVEQGSHDELLAE-NGLYAYLY 234 (237)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHhCCEEEEEECCEEEEEcCHHHHHhc-cChHHHHH
Confidence 9999999999999999999999988778999999999999988999999999999999999999876 55666544
|
coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. |
| >cd03288 ABCC_SUR2 The SUR domain 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-43 Score=391.66 Aligned_cols=240 Identities=32% Similarity=0.593 Sum_probs=218.5
Q ss_pred CCcccEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHH
Q 000984 379 DIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWI 458 (1198)
Q Consensus 379 ~~~g~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~ 458 (1198)
...+.|+++|++++|+.. .+.+|+|+||++++||+++|+|+||||||||+++|+|+++|.+|+|.++|.++.+.+...+
T Consensus 15 ~~~~~i~~~~l~~~~~~~-~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~ 93 (257)
T cd03288 15 GLGGEIKIHDLCVRYENN-LKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPLHTL 93 (257)
T ss_pred cCCceEEEEEEEEEeCCC-CCcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCCCCCeEEECCEEhhhCCHHHH
Confidence 346789999999999743 2469999999999999999999999999999999999999999999999999998888888
Q ss_pred hcceEEEcCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhhc
Q 000984 459 RKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAIL 538 (1198)
Q Consensus 459 r~~i~~v~Q~~~l~~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal~ 538 (1198)
|++++|++|+|++|++|+++|+.+.. ....++++.+++..++.+.+..+|.|+++.+++.+.+||||||||++||||++
T Consensus 94 ~~~i~~v~q~~~l~~~tv~~nl~~~~-~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~LS~G~~qrl~laral~ 172 (257)
T cd03288 94 RSRLSIILQDPILFSGSIRFNLDPEC-KCTDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFV 172 (257)
T ss_pred hhhEEEECCCCcccccHHHHhcCcCC-CCCHHHHHHHHHHhCcHHHHhhcccccCcEeccCCCcCCHHHHHHHHHHHHHh
Confidence 99999999999999999999997542 23456677888888899999999999999999999999999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhCCCeEEEEecCcchhhccCEEEEEeCCEEEEecChhhHhcCCCchhHHH
Q 000984 539 KDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVEDPEGAYSQL 618 (1198)
Q Consensus 539 ~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~ 618 (1198)
++|++|||||||++||+++.+.+.+.++++.+++|+|++||+++.+..||+|++|++|++++.|+++++.+..++.|.++
T Consensus 173 ~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~~~~~~~~~ 252 (257)
T cd03288 173 RKSSILIMDEATASIDMATENILQKVVMTAFADRTVVTIAHRVSTILDADLVLVLSRGILVECDTPENLLAQEDGVFASL 252 (257)
T ss_pred cCCCEEEEeCCccCCCHHHHHHHHHHHHHhcCCCEEEEEecChHHHHhCCEEEEEECCEEEEeCCHHHHHhccchHHHHH
Confidence 99999999999999999999999999988777899999999999998899999999999999999999987656667766
Q ss_pred HH
Q 000984 619 IR 620 (1198)
Q Consensus 619 ~~ 620 (1198)
+.
T Consensus 253 ~~ 254 (257)
T cd03288 253 VR 254 (257)
T ss_pred Hh
Confidence 54
|
The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. |
| >PRK11147 ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-42 Score=431.48 Aligned_cols=207 Identities=24% Similarity=0.435 Sum_probs=159.3
Q ss_pred cEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcce
Q 000984 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKI 462 (1198)
Q Consensus 383 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i 462 (1198)
.|+++|++++|+. .++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|. ..+
T Consensus 3 ~l~i~~ls~~~~~---~~il~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~p~~G~I~~~~~-----------~~~ 68 (635)
T PRK11147 3 LISIHGAWLSFSD---APLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVLLDDGRIIYEQD-----------LIV 68 (635)
T ss_pred EEEEeeEEEEeCC---ceeEeCcEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEeCCC-----------CEE
Confidence 3889999999963 46999999999999999999999999999999999999999999999872 147
Q ss_pred EEEcCCCCC-CcccHHHHHhcCCCC------------------CCHHHHHHHHH-------------HhcHHHHHHhCCC
Q 000984 463 GLVSQEPVL-FTGSIKDNIAYGKDD------------------ATTEEIRVATE-------------LANAAKFIDKLPQ 510 (1198)
Q Consensus 463 ~~v~Q~~~l-~~~ti~~Ni~~~~~~------------------~~~~~~~~~~~-------------~~~~~~~i~~l~~ 510 (1198)
++++|++.. ..+++.+++..+... ...+.+..... ...+.+.+..+
T Consensus 69 ~~l~q~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l-- 146 (635)
T PRK11147 69 ARLQQDPPRNVEGTVYDFVAEGIEEQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQLDHHNLWQLENRINEVLAQL-- 146 (635)
T ss_pred EEeccCCCCCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHhC--
Confidence 888887643 236777765322100 00000000000 01122333333
Q ss_pred CccchhcCCCCCCChHHHHHHhHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhCCCeEEEEecCcchhhc-cCE
Q 000984 511 GIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRN-ADM 589 (1198)
Q Consensus 511 g~~t~v~~~g~~lSgGqkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~-~d~ 589 (1198)
|+. .......||||||||++|||||+.+|++|||||||++||+++...+.+.|+++ +.|+|+|||+...+.. ||+
T Consensus 147 gl~--~~~~~~~LSgGekqRv~LAraL~~~P~lLLLDEPt~~LD~~~~~~L~~~L~~~--~~tvlivsHd~~~l~~~~d~ 222 (635)
T PRK11147 147 GLD--PDAALSSLSGGWLRKAALGRALVSNPDVLLLDEPTNHLDIETIEWLEGFLKTF--QGSIIFISHDRSFIRNMATR 222 (635)
T ss_pred CCC--CCCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHhC--CCEEEEEeCCHHHHHHhcCe
Confidence 332 24456789999999999999999999999999999999999999999999876 3699999999999876 999
Q ss_pred EEEEeCCEEEE-ecChhhHhc
Q 000984 590 IAVIHRGKIVE-KGTHSKLVE 609 (1198)
Q Consensus 590 i~~l~~G~i~~-~g~~~~l~~ 609 (1198)
|++|++|+++. .|++++.++
T Consensus 223 i~~L~~G~i~~~~g~~~~~~~ 243 (635)
T PRK11147 223 IVDLDRGKLVSYPGNYDQYLL 243 (635)
T ss_pred EEEEECCEEEEecCCHHHHHH
Confidence 99999999974 577766543
|
|
| >cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-43 Score=380.82 Aligned_cols=227 Identities=50% Similarity=0.857 Sum_probs=209.8
Q ss_pred ccEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcc
Q 000984 382 GDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKK 461 (1198)
Q Consensus 382 g~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~ 461 (1198)
+.|+++|++++|+. .+++++|+||++++||+++|+||||||||||+++|+|+++|.+|+|.++|.++.+.+...+|++
T Consensus 1 ~~l~~~~l~~~~~~--~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 78 (229)
T cd03254 1 GEIEFENVNFSYDE--KKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSLRSM 78 (229)
T ss_pred CeEEEEEEEEecCC--CCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEeHHHcCHHHHhhh
Confidence 35899999999963 2359999999999999999999999999999999999999999999999999988888888899
Q ss_pred eEEEcCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhhccCC
Q 000984 462 IGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDP 541 (1198)
Q Consensus 462 i~~v~Q~~~l~~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal~~~~ 541 (1198)
++|++|+|++|.+|++||+.++.+....+++..+++.+++.+.++.+|.|+++.++.....||||||||++|||||+++|
T Consensus 79 i~~~~q~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~al~~~p 158 (229)
T cd03254 79 IGVVLQDTFLFSGTIMENIRLGRPNATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDP 158 (229)
T ss_pred EEEecCCchhhhhHHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999876655667778888888999999999999999999999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHhHHHHHHHHHHHhCCCeEEEEecCcchhhccCEEEEEeCCEEEEecChhhHhcC
Q 000984 542 RILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVED 610 (1198)
Q Consensus 542 ~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~ 610 (1198)
+++||||||++||+.+.+.+.+.++++.+++|+|++||+++.+..||++++|++|++++.|+++++.++
T Consensus 159 ~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~~~~~~~~~~~~~~ 227 (229)
T cd03254 159 KILILDEATSNIDTETEKLIQEALEKLMKGRTSIIIAHRLSTIKNADKILVLDDGKIIEEGTHDELLAK 227 (229)
T ss_pred CEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHhhCCEEEEEeCCeEEEeCCHHHHHhh
Confidence 999999999999999999999999988778999999999999888999999999999999998887653
|
In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-43 Score=388.78 Aligned_cols=217 Identities=32% Similarity=0.558 Sum_probs=189.0
Q ss_pred cEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcce
Q 000984 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKI 462 (1198)
Q Consensus 383 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i 462 (1198)
.|+++|++.+|++. . +++|+||+|++||+++|+|||||||||||++|.|+.+|++|+|.|||.++.++++.+ +.|
T Consensus 3 ~i~l~~v~K~yg~~--~-~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P~~--R~i 77 (338)
T COG3839 3 ELELKNVRKSFGSF--E-VLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEK--RGI 77 (338)
T ss_pred EEEEeeeEEEcCCc--e-eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhH--CCE
Confidence 58999999999642 2 999999999999999999999999999999999999999999999999999999875 689
Q ss_pred EEEcCCCCCCc-ccHHHHHhcCCCCCC------HHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHH
Q 000984 463 GLVSQEPVLFT-GSIKDNIAYGKDDAT------TEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIAR 535 (1198)
Q Consensus 463 ~~v~Q~~~l~~-~ti~~Ni~~~~~~~~------~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lAR 535 (1198)
|+|+|+.-||. .||+|||.|+..... ++++.++++..++.+ .+..+...||||||||+||||
T Consensus 78 amVFQ~yALyPhmtV~~Niaf~Lk~~~~~k~ei~~rV~eva~~L~l~~-----------lL~r~P~~LSGGQrQRVAlaR 146 (338)
T COG3839 78 AMVFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEH-----------LLNRKPLQLSGGQRQRVALAR 146 (338)
T ss_pred EEEeCCccccCCCcHHHHhhhhhhhCCCchHHHHHHHHHHHHHcCChh-----------HHhcCcccCChhhHHHHHHHH
Confidence 99999999995 699999999865321 345555555555444 455566789999999999999
Q ss_pred hhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhC--CCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChhhHhcCCC
Q 000984 536 AILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVEDPE 612 (1198)
Q Consensus 536 al~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~~ 612 (1198)
||.++|+++|||||+|+||++....+...|+++.+ +.|+|.|||+...... +|||.||++|+|.+.|+|.|+..++.
T Consensus 147 AlVr~P~v~L~DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq~EAmtladri~Vm~~G~i~Q~g~p~ely~~P~ 226 (338)
T COG3839 147 ALVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQVEAMTLADRIVVMNDGRIQQVGTPLELYERPA 226 (338)
T ss_pred HHhcCCCEEEecCchhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCHHHHHhhCCEEEEEeCCeeeecCChHHHhhCcc
Confidence 99999999999999999999998888888877654 5799999999987765 99999999999999999999998765
Q ss_pred chh
Q 000984 613 GAY 615 (1198)
Q Consensus 613 ~~~ 615 (1198)
..|
T Consensus 227 n~f 229 (338)
T COG3839 227 NLF 229 (338)
T ss_pred chh
Confidence 443
|
|
| >cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-42 Score=381.86 Aligned_cols=226 Identities=55% Similarity=0.908 Sum_probs=208.7
Q ss_pred EEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcceE
Q 000984 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIG 463 (1198)
Q Consensus 384 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~ 463 (1198)
|+++|++++|++. ..++++|+||++++||+++|+||||||||||+++|.|+++|++|+|.++|.++.+.+...+|++++
T Consensus 1 i~~~~l~~~~~~~-~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (234)
T cd03251 1 VEFKNVTFRYPGD-GPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASLRRQIG 79 (234)
T ss_pred CEEEEEEEEeCCC-CccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccCCCCEEEECCEEhhhCCHHHHHhhEE
Confidence 4789999999643 236999999999999999999999999999999999999999999999999998888788889999
Q ss_pred EEcCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhhccCCCE
Q 000984 464 LVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRI 543 (1198)
Q Consensus 464 ~v~Q~~~l~~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal~~~~~i 543 (1198)
|++|+|++|..|++||+.++......+++...++..++.+.++.+|.|+++..+.....||||||||++||||++++|++
T Consensus 80 ~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~l 159 (234)
T cd03251 80 LVSQDVFLFNDTVAENIAYGRPGATREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPI 159 (234)
T ss_pred EeCCCCeeccccHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCHHHHHHHHHHHHHhcCCCE
Confidence 99999999999999999987655556677777888888999999999999999999999999999999999999999999
Q ss_pred EEEeCCCCCCCHHhHHHHHHHHHHHhCCCeEEEEecCcchhhccCEEEEEeCCEEEEecChhhHhcC
Q 000984 544 LLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVED 610 (1198)
Q Consensus 544 lllDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~ 610 (1198)
+||||||++||+.+...+.+.|+++.+++|+|++||+++.+..||+|++|++|++++.|+++++...
T Consensus 160 llLDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~ 226 (234)
T cd03251 160 LILDEATSALDTESERLVQAALERLMKNRTTFVIAHRLSTIENADRIVVLEDGKIVERGTHEELLAQ 226 (234)
T ss_pred EEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHhhCCEEEEecCCeEeeeCCHHHHHHc
Confidence 9999999999999999999999988788999999999999988999999999999999999988765
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-43 Score=375.79 Aligned_cols=214 Identities=33% Similarity=0.527 Sum_probs=188.8
Q ss_pred cEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcce
Q 000984 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKI 462 (1198)
Q Consensus 383 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i 462 (1198)
.++++|++|+|+ ++++|+|+||++++||+++|+||||||||||+++|.|++.|.+|+|.+||+++.+++.+++.+++
T Consensus 2 ~L~~~~ls~~y~---~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~i 78 (258)
T COG1120 2 MLEVENLSFGYG---GKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKL 78 (258)
T ss_pred eeEEEEEEEEEC---CeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhE
Confidence 378999999996 35799999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEcCCCC-CCcccHHHHHhcCCCCC-------C---HHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHH
Q 000984 463 GLVSQEPV-LFTGSIKDNIAYGKDDA-------T---TEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRI 531 (1198)
Q Consensus 463 ~~v~Q~~~-l~~~ti~~Ni~~~~~~~-------~---~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri 531 (1198)
|||||++. -|.-||+|-+.+|+-.+ + .+.+.++++.+++.++ ..+.-..||||||||+
T Consensus 79 a~vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~l-----------a~r~~~~LSGGerQrv 147 (258)
T COG1120 79 AYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHL-----------ADRPVDELSGGERQRV 147 (258)
T ss_pred EEeccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHH-----------hcCcccccChhHHHHH
Confidence 99999974 56789999999985321 1 2345566666665544 3445567999999999
Q ss_pred hHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh--CCCeEEEEecCcchh-hccCEEEEEeCCEEEEecChhhHh
Q 000984 532 AIARAILKDPRILLLDEATSALDAESEKVVQEALDRIM--VNRTTVIVAHRLSTV-RNADMIAVIHRGKIVEKGTHSKLV 608 (1198)
Q Consensus 532 ~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~--~~~t~i~itH~~~~~-~~~d~i~~l~~G~i~~~g~~~~l~ 608 (1198)
.|||||.++|+|++||||||+||....-.+.+.++++. +++|+|+|.|+++.. +.||++++|++|+++..|+|+|.+
T Consensus 148 ~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~A~ryad~~i~lk~G~i~a~G~p~evl 227 (258)
T COG1120 148 LIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNLAARYADHLILLKDGKIVAQGTPEEVL 227 (258)
T ss_pred HHHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEeecCcchhc
Confidence 99999999999999999999999999999999998876 369999999999876 569999999999999999999987
Q ss_pred cC
Q 000984 609 ED 610 (1198)
Q Consensus 609 ~~ 610 (1198)
..
T Consensus 228 T~ 229 (258)
T COG1120 228 TE 229 (258)
T ss_pred CH
Confidence 64
|
|
| >cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-42 Score=381.56 Aligned_cols=232 Identities=50% Similarity=0.808 Sum_probs=211.7
Q ss_pred EEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcceE
Q 000984 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIG 463 (1198)
Q Consensus 384 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~ 463 (1198)
++++|++++|+. +.++|+|+||+|++||+++|+||||||||||+++|.|+++|++|+|.++|.++.+.+...+|+.++
T Consensus 1 l~~~~l~~~~~~--~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~~g~~~~~~~~~~~~~~i~ 78 (236)
T cd03253 1 IEFENVTFAYDP--GRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSLRRAIG 78 (236)
T ss_pred CEEEEEEEEeCC--CCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEhhhCCHHHHHhhEE
Confidence 468999999963 245999999999999999999999999999999999999999999999999998888888888999
Q ss_pred EEcCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhhccCCCE
Q 000984 464 LVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRI 543 (1198)
Q Consensus 464 ~v~Q~~~l~~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal~~~~~i 543 (1198)
|++|+|++|++|++||+.++....+++++...++.+++.+.+..+|.|+++.+..+..+||||||||++|||||+++|++
T Consensus 79 ~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~rl~la~aL~~~p~l 158 (236)
T cd03253 79 VVPQDTVLFNDTIGYNIRYGRPDATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPPI 158 (236)
T ss_pred EECCCChhhcchHHHHHhhcCCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCCCE
Confidence 99999999999999999987655566777778888889999999999999999999999999999999999999999999
Q ss_pred EEEeCCCCCCCHHhHHHHHHHHHHHhCCCeEEEEecCcchhhccCEEEEEeCCEEEEecChhhHhcCCCchhHHH
Q 000984 544 LLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVEDPEGAYSQL 618 (1198)
Q Consensus 544 lllDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~ 618 (1198)
+||||||++||+++...+.+.|.++.+++|+|++||+++.+..||++++|++|++++.|+.+++... ...|+.+
T Consensus 159 lllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~d~~~~l~~g~i~~~~~~~~~~~~-~~~~~~~ 232 (236)
T cd03253 159 LLLDEATSALDTHTEREIQAALRDVSKGRTTIVIAHRLSTIVNADKIIVLKDGRIVERGTHEELLAK-GGLYAEM 232 (236)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHhCCEEEEEECCEEEeeCCHHHHhhc-ccHHHHH
Confidence 9999999999999999999999887668899999999999988999999999999999999888764 3444443
|
Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-42 Score=381.69 Aligned_cols=227 Identities=63% Similarity=1.044 Sum_probs=207.7
Q ss_pred EEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcceE
Q 000984 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIG 463 (1198)
Q Consensus 384 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~ 463 (1198)
|+++|+++.|+...+.++|+|+||++++||.++|+|+||||||||+++|+|+++|++|+|.++|.++.+.+...++++++
T Consensus 1 l~i~~l~~~~~~~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 80 (238)
T cd03249 1 IEFKNVSFRYPSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWLRSQIG 80 (238)
T ss_pred CeEEEEEEecCCCCCccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCCCCEEEECCEehhhcCHHHHHhhEE
Confidence 46899999997533356999999999999999999999999999999999999999999999999998877777788899
Q ss_pred EEcCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhhccCCCE
Q 000984 464 LVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRI 543 (1198)
Q Consensus 464 ~v~Q~~~l~~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal~~~~~i 543 (1198)
|++|+|.+|..|++||+.++......++....++..++.+.+..+|.|+++..+....+||||||||++||||++.+|++
T Consensus 81 ~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la~al~~~p~l 160 (238)
T cd03249 81 LVSQEPVLFDGTIAENIRYGKPDATDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRNPKI 160 (238)
T ss_pred EECCchhhhhhhHHHHhhccCCCCCHHHHHHHHHHcChHHHHHhhccccceeeccCCccCCHHHHHHHHHHHHHhcCCCE
Confidence 99999999999999999987655556667777788888889999999999999999999999999999999999999999
Q ss_pred EEEeCCCCCCCHHhHHHHHHHHHHHhCCCeEEEEecCcchhhccCEEEEEeCCEEEEecChhhHhcC
Q 000984 544 LLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVED 610 (1198)
Q Consensus 544 lllDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~ 610 (1198)
+||||||++||+.+.+.+.+.++++.+++|+|++||+++.+..||+|++|++|++++.|+.+++...
T Consensus 161 lllDEP~~gLD~~~~~~l~~~l~~~~~g~~vi~~sh~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~ 227 (238)
T cd03249 161 LLLDEATSALDAESEKLVQEALDRAMKGRTTIVIAHRLSTIRNADLIAVLQNGQVVEQGTHDELMAQ 227 (238)
T ss_pred EEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCEEEEeCCHHHHhhc
Confidence 9999999999999999999999887678999999999999888999999999999999999888654
|
In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. |
| >COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-43 Score=356.64 Aligned_cols=223 Identities=35% Similarity=0.546 Sum_probs=189.1
Q ss_pred ccEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHH---HH
Q 000984 382 GDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQ---WI 458 (1198)
Q Consensus 382 g~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~---~~ 458 (1198)
..|++++|+++|++ +.+++|+||+|++||.++|+|+||||||||+++|.|++.|++|+|.++|.|+.+++.+ .+
T Consensus 7 ~~I~vr~v~~~fG~---~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~~~~i 83 (263)
T COG1127 7 PLIEVRGVTKSFGD---RVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYEI 83 (263)
T ss_pred ceEEEeeeeeecCC---EEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHHHHHH
Confidence 35999999999964 4699999999999999999999999999999999999999999999999999988754 56
Q ss_pred hcceEEEcCCCCCCc-ccHHHHHhcCCCCC---CHHHHHH----HHHHhcHHHHHHhCCCCccch-hcCCCCCCChHHHH
Q 000984 459 RKKIGLVSQEPVLFT-GSIKDNIAYGKDDA---TTEEIRV----ATELANAAKFIDKLPQGIDTL-VGEHGTQLSGGQKQ 529 (1198)
Q Consensus 459 r~~i~~v~Q~~~l~~-~ti~~Ni~~~~~~~---~~~~~~~----~~~~~~~~~~i~~l~~g~~t~-v~~~g~~lSgGqkq 529 (1198)
|+++|+++|.--||+ -||+||+.|+.-++ +++.+++ .++++ |+... ...-...||||++.
T Consensus 84 r~r~GvlFQ~gALFssltV~eNVafplre~~~lp~~~i~~lv~~KL~~V-----------GL~~~~~~~~PsELSGGM~K 152 (263)
T COG1127 84 RKRMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELVLMKLELV-----------GLRGAAADLYPSELSGGMRK 152 (263)
T ss_pred HhheeEEeeccccccccchhHhhheehHhhccCCHHHHHHHHHHHHHhc-----------CCChhhhhhCchhhcchHHH
Confidence 899999999999995 69999999864433 3333333 23333 44444 22335789999999
Q ss_pred HHhHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhC--CCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChhh
Q 000984 530 RIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSK 606 (1198)
Q Consensus 530 ri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~ 606 (1198)
|+|||||+..||+|+++|||||+|||.+...+.+.|+++.+ +.|+++|||+++++.. ||||+++.+|+|...|+++|
T Consensus 153 RvaLARAialdPell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl~s~~~i~Drv~~L~~gkv~~~Gt~~e 232 (263)
T COG1127 153 RVALARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDLDSLLTIADRVAVLADGKVIAEGTPEE 232 (263)
T ss_pred HHHHHHHHhcCCCEEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEECChHHHHhhhceEEEEeCCEEEEeCCHHH
Confidence 99999999999999999999999999999998888877653 6899999999998876 89999999999999999999
Q ss_pred HhcCCCchhHHH
Q 000984 607 LVEDPEGAYSQL 618 (1198)
Q Consensus 607 l~~~~~~~~~~~ 618 (1198)
+.+..+...+++
T Consensus 233 l~~sd~P~v~qf 244 (263)
T COG1127 233 LLASDDPWVRQF 244 (263)
T ss_pred HHhCCCHHHHHH
Confidence 998755444443
|
|
| >COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-42 Score=403.95 Aligned_cols=208 Identities=32% Similarity=0.490 Sum_probs=165.8
Q ss_pred cEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcce
Q 000984 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKI 462 (1198)
Q Consensus 383 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i 462 (1198)
.|+++|++++|+. +++|+|+||++.+|+++||||+||||||||+++|.|..+|++|+|..++. -++
T Consensus 3 ~i~~~~ls~~~g~---~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~~G~i~~~~~-----------~~v 68 (530)
T COG0488 3 MITLENLSLAYGD---RPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPKG-----------LRV 68 (530)
T ss_pred eEEEeeeEEeeCC---ceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCcCCCCeEeecCC-----------ceE
Confidence 4889999999953 56999999999999999999999999999999999999999999998762 279
Q ss_pred EEEcCCCCCCc-ccHHHHHhcCCCCCCH--HHHHHHHH------------------H-------hcHHHHHHhCCCCccc
Q 000984 463 GLVSQEPVLFT-GSIKDNIAYGKDDATT--EEIRVATE------------------L-------ANAAKFIDKLPQGIDT 514 (1198)
Q Consensus 463 ~~v~Q~~~l~~-~ti~~Ni~~~~~~~~~--~~~~~~~~------------------~-------~~~~~~i~~l~~g~~t 514 (1198)
+|++|+|.+.. .||++.+..+...... .+++.+.. . ..+...+..+ |+..
T Consensus 69 ~~l~Q~~~~~~~~tv~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gL--g~~~ 146 (530)
T COG0488 69 GYLSQEPPLDPEKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGL--GFPD 146 (530)
T ss_pred EEeCCCCCcCCCccHHHHHHhhhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcC--CCCc
Confidence 99999999985 4999999876532111 11111110 0 1112222222 3333
Q ss_pred hhcCCCCCCChHHHHHHhHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhCCCeEEEEecCcchhhc-cCEEEEE
Q 000984 515 LVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRN-ADMIAVI 593 (1198)
Q Consensus 515 ~v~~~g~~lSgGqkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~-~d~i~~l 593 (1198)
. ...-.+||||||-|++|||||+.+||+|||||||++||.++..++.+.|.+. ++ |+|+|||+.+++.. |++|+.+
T Consensus 147 ~-~~~~~~LSGG~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~~-~g-tviiVSHDR~FLd~V~t~I~~l 223 (530)
T COG0488 147 E-DRPVSSLSGGWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKRY-PG-TVIVVSHDRYFLDNVATHILEL 223 (530)
T ss_pred c-cCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhC-CC-cEEEEeCCHHHHHHHhhheEEe
Confidence 3 4455689999999999999999999999999999999999999999999864 45 99999999999987 9999999
Q ss_pred eCCEEE-EecChhhHhc
Q 000984 594 HRGKIV-EKGTHSKLVE 609 (1198)
Q Consensus 594 ~~G~i~-~~g~~~~l~~ 609 (1198)
++|++. +.|+|+..++
T Consensus 224 d~g~l~~y~Gny~~~~~ 240 (530)
T COG0488 224 DRGKLTPYKGNYSSYLE 240 (530)
T ss_pred cCCceeEecCCHHHHHH
Confidence 999875 5666665543
|
|
| >cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-42 Score=374.90 Aligned_cols=220 Identities=35% Similarity=0.653 Sum_probs=204.5
Q ss_pred ccEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcc
Q 000984 382 GDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKK 461 (1198)
Q Consensus 382 g~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~ 461 (1198)
|.|+++|++++|+.. ++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.+...+|++
T Consensus 1 ~~l~~~~l~~~~~~~-~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 79 (221)
T cd03244 1 GDIEFKNVSLRYRPN-LPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHDLRSR 79 (221)
T ss_pred CcEEEEEEEEecCCC-CcccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhHhCCHHHHhhh
Confidence 358999999999743 2469999999999999999999999999999999999999999999999999988888888999
Q ss_pred eEEEcCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhhccCC
Q 000984 462 IGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDP 541 (1198)
Q Consensus 462 i~~v~Q~~~l~~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal~~~~ 541 (1198)
++|++|+|.++.+|++||+.+.. ....+++.++++..++.+.+..+|.|+++..++.+.+||||||||++||||++++|
T Consensus 80 i~~~~q~~~l~~~tv~enl~~~~-~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p 158 (221)
T cd03244 80 ISIIPQDPVLFSGTIRSNLDPFG-EYSDEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKS 158 (221)
T ss_pred EEEECCCCccccchHHHHhCcCC-CCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHHHHHHHhcCC
Confidence 99999999999999999998654 34667788888999999999999999999999999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHhHHHHHHHHHHHhCCCeEEEEecCcchhhccCEEEEEeCCEEEEecC
Q 000984 542 RILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGT 603 (1198)
Q Consensus 542 ~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~ 603 (1198)
+++||||||++||+.+.+.+.+.++++.+++|+|++||+++.+..||++++|++|++++.|+
T Consensus 159 ~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~~~~~~~ 220 (221)
T cd03244 159 KILVLDEATASVDPETDALIQKTIREAFKDCTVLTIAHRLDTIIDSDRILVLDKGRVVEFDS 220 (221)
T ss_pred CEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCeEEecCC
Confidence 99999999999999999999999998877899999999999998899999999999998875
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-43 Score=363.31 Aligned_cols=195 Identities=35% Similarity=0.511 Sum_probs=168.1
Q ss_pred cEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcce
Q 000984 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKI 462 (1198)
Q Consensus 383 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i 462 (1198)
.+++++++++|+. ..+|+|+||+|++||+++|+||||||||||+++|.|+..|++|+|.++|.++.... ..+
T Consensus 3 ~l~i~~v~~~f~~---~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~p~-----~~~ 74 (248)
T COG1116 3 LLEIEGVSKSFGG---VEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGPG-----PDI 74 (248)
T ss_pred eEEEEeeEEEeCc---eEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCCCC-----CCE
Confidence 4889999999974 56999999999999999999999999999999999999999999999998874433 479
Q ss_pred EEEcCCCCCCc-ccHHHHHhcCCCCCC------HHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHH
Q 000984 463 GLVSQEPVLFT-GSIKDNIAYGKDDAT------TEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIAR 535 (1198)
Q Consensus 463 ~~v~Q~~~l~~-~ti~~Ni~~~~~~~~------~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lAR 535 (1198)
+||+|++.||. -||+||+.++..... .++..+.++.+++.++- +.....||||||||+||||
T Consensus 75 ~~vFQ~~~LlPW~Tv~~NV~l~l~~~~~~~~e~~~~a~~~L~~VgL~~~~-----------~~~P~qLSGGMrQRVaiAR 143 (248)
T COG1116 75 GYVFQEDALLPWLTVLDNVALGLELRGKSKAEARERAKELLELVGLAGFE-----------DKYPHQLSGGMRQRVAIAR 143 (248)
T ss_pred EEEeccCcccchhhHHhhheehhhccccchHhHHHHHHHHHHHcCCcchh-----------hcCccccChHHHHHHHHHH
Confidence 99999999997 799999999865321 23455555555555544 4445689999999999999
Q ss_pred hhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhC--CCeEEEEecCcchhhc-cCEEEEEeCC
Q 000984 536 AILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRN-ADMIAVIHRG 596 (1198)
Q Consensus 536 al~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~~-~d~i~~l~~G 596 (1198)
||..+|++|+||||++|||+.|...+++-+.++.+ ++|+++|||+++..-. +|||++|.++
T Consensus 144 AL~~~P~lLLlDEPFgALDalTR~~lq~~l~~lw~~~~~TvllVTHdi~EAv~LsdRivvl~~~ 207 (248)
T COG1116 144 ALATRPKLLLLDEPFGALDALTREELQDELLRLWEETRKTVLLVTHDVDEAVYLADRVVVLSNR 207 (248)
T ss_pred HHhcCCCEEEEcCCcchhhHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHhhhCEEEEecCC
Confidence 99999999999999999999999999999887764 5899999999998654 9999999983
|
|
| >PLN03073 ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-42 Score=426.94 Aligned_cols=220 Identities=23% Similarity=0.307 Sum_probs=160.9
Q ss_pred ccEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccC---CCCCCeEEECCeecCC--cCH-
Q 000984 382 GDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFY---DPQAGEVLIDGINLKE--FQL- 455 (1198)
Q Consensus 382 g~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~---~~~~G~i~i~g~~~~~--~~~- 455 (1198)
..|+++|++++|+. .++|+|+||+|++|+++|||||||||||||+++|+|.. .|.+|+|...++++.. .+.
T Consensus 176 ~~I~i~nls~~y~~---~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~~~g~p~~g~I~~~~Q~~~g~~~t~~ 252 (718)
T PLN03073 176 KDIHMENFSISVGG---RDLIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAIDGIPKNCQILHVEQEVVGDDTTAL 252 (718)
T ss_pred eeEEEceEEEEeCC---CEEEECCEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCCCCEEEEEeccCCCCCCCHH
Confidence 35999999999963 35999999999999999999999999999999999864 5788999754433211 111
Q ss_pred -----------HHHhcceEEEcCCCCCCcccHHHHHhcCCC-CCCH----HHHHHHHHHhc----------HHHHHHhCC
Q 000984 456 -----------QWIRKKIGLVSQEPVLFTGSIKDNIAYGKD-DATT----EEIRVATELAN----------AAKFIDKLP 509 (1198)
Q Consensus 456 -----------~~~r~~i~~v~Q~~~l~~~ti~~Ni~~~~~-~~~~----~~~~~~~~~~~----------~~~~i~~l~ 509 (1198)
..++..+++++|+|.+...+..+|...... ..+. +++.++.+..+ +.+.+..+
T Consensus 253 ~~v~~~~~~~~~~~~~~~~~~~q~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~r~~~~L~~l- 331 (718)
T PLN03073 253 QCVLNTDIERTQLLEEEAQLVAQQRELEFETETGKGKGANKDGVDKDAVSQRLEEIYKRLELIDAYTAEARAASILAGL- 331 (718)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHhhhcccccccccccccccchHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHC-
Confidence 113455889999886554455455422111 0111 22222222221 12223333
Q ss_pred CCcc-chhcCCCCCCChHHHHHHhHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhCCCeEEEEecCcchhhc-c
Q 000984 510 QGID-TLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRN-A 587 (1198)
Q Consensus 510 ~g~~-t~v~~~g~~lSgGqkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~-~ 587 (1198)
|++ ........+||||||||++|||||+.+|++|||||||++||+.+...+.+.|+++ ++|+|+|||++..+.. |
T Consensus 332 -gl~~~~~~~~~~~LSgG~k~rv~LA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~--~~tviivsHd~~~l~~~~ 408 (718)
T PLN03073 332 -SFTPEMQVKATKTFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYLLKW--PKTFIVVSHAREFLNTVV 408 (718)
T ss_pred -CCChHHHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHc--CCEEEEEECCHHHHHHhC
Confidence 432 2234445689999999999999999999999999999999999999999999886 6899999999999876 9
Q ss_pred CEEEEEeCCEEE-EecChhhHh
Q 000984 588 DMIAVIHRGKIV-EKGTHSKLV 608 (1198)
Q Consensus 588 d~i~~l~~G~i~-~~g~~~~l~ 608 (1198)
|+|++|++|++. ..|++++..
T Consensus 409 d~i~~l~~g~i~~~~g~~~~~~ 430 (718)
T PLN03073 409 TDILHLHGQKLVTYKGDYDTFE 430 (718)
T ss_pred CEEEEEECCEEEEeCCCHHHHH
Confidence 999999999996 567766543
|
|
| >TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-42 Score=392.43 Aligned_cols=219 Identities=31% Similarity=0.530 Sum_probs=186.5
Q ss_pred EEEEeEEEEcCCCC-CCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHH---Hh
Q 000984 384 IELRDVYFSYPARP-NEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQW---IR 459 (1198)
Q Consensus 384 i~~~~v~~~y~~~~-~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~---~r 459 (1198)
|+++|++++|+... ..++|+|+||+|++||+++|+||||||||||+++|+|+.+|++|+|.+||.++.+++..+ .|
T Consensus 2 I~~~~lsk~y~~~~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~~~~l~~~r 81 (343)
T TIGR02314 2 IKLSNITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKAR 81 (343)
T ss_pred EEEEEEEEEECCCCcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHh
Confidence 78999999996322 246999999999999999999999999999999999999999999999999998887554 57
Q ss_pred cceEEEcCCCCCCc-ccHHHHHhcCCC--CCCHH----HHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHh
Q 000984 460 KKIGLVSQEPVLFT-GSIKDNIAYGKD--DATTE----EIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIA 532 (1198)
Q Consensus 460 ~~i~~v~Q~~~l~~-~ti~~Ni~~~~~--~~~~~----~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~ 532 (1198)
++|+|++|++.+|. .|++||+.++.. ..+.+ ++.+.++.+ |+..........||||||||++
T Consensus 82 ~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~e~l~~v-----------gL~~~~~~~~~~LSgGqkQRV~ 150 (343)
T TIGR02314 82 RQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKRKVTELLALV-----------GLGDKHDSYPSNLSGGQKQRVA 150 (343)
T ss_pred cCEEEEECCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHc-----------CCchhhhCChhhCCHHHHHHHH
Confidence 89999999999995 799999997532 12222 223333333 4444445566789999999999
Q ss_pred HHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhC--CCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChhhHhc
Q 000984 533 IARAILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVE 609 (1198)
Q Consensus 533 lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~ 609 (1198)
|||||+.+|++||||||||+||+.+...+.+.++++.+ +.|+|+|||+++.+.. ||+|++|++|++++.|+++++..
T Consensus 151 IARAL~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~~v~~~~d~v~vl~~G~iv~~g~~~~v~~ 230 (343)
T TIGR02314 151 IARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQGTVSEIFS 230 (343)
T ss_pred HHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHc
Confidence 99999999999999999999999999999999988754 6899999999999865 99999999999999999999987
Q ss_pred CCCc
Q 000984 610 DPEG 613 (1198)
Q Consensus 610 ~~~~ 613 (1198)
++..
T Consensus 231 ~p~~ 234 (343)
T TIGR02314 231 HPKT 234 (343)
T ss_pred CCCc
Confidence 6443
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. |
| >COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-39 Score=345.69 Aligned_cols=462 Identities=20% Similarity=0.235 Sum_probs=330.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhccCCcchHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000984 117 GIASFLQVTCWMITGERQATRIRGLYLKTILRQDVAFFDNETNTGEVVGRMSGDTVLIQDAMGEKVGKFLQLMATFLGGF 196 (1198)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~f~~~~~~G~i~~r~s~D~~~i~~~~~~~~~~~~~~~~~~i~~~ 196 (1198)
.+...+........++..-.++|..+.++++..|+..++.- .+++++.++++|+..|.-. ...+..+.+....++++.
T Consensus 62 ~~ss~is~lg~t~~gq~~I~klr~~~~~kil~tplerier~-~~~rlla~L~~Dvr~ISf~-~s~lp~~~qa~il~l~s~ 139 (546)
T COG4615 62 MVSSLISQLGLTTLGQHFIYKLRSEFIKKILDTPLERIERL-GSARLLAGLTSDVRNISFA-FSRLPELVQAIILTLGSA 139 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHh-cccchhhhhcccccceeeh-HhhhHHHHHHHHHHHHHH
Confidence 33444455566677888999999999999999999999875 9999999999999999844 344566788888889999
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcHHHHH--HHHHHHHH
Q 000984 197 LIAFIKGWLLTLVMLSSIPLLAMSGGVMAIMISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQAM--SNYKKFLV 274 (1198)
Q Consensus 197 i~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~--~~~~~~~~ 274 (1198)
....++++.+.++.++.+.+.++...+...+..+.....++..++..+..+..+.|.+.++......+.. +.+....+
T Consensus 140 aYLayLSp~mf~l~vV~ivv~~~~~~~~m~rv~k~~~aare~ed~Lq~~y~~il~G~KEL~l~r~R~~~~h~~~~~~~a~ 219 (546)
T COG4615 140 AYLAYLSPKMFLLTVVWIVVTIWGGFVLMARVYKHMAAARETEDKLQNDYQTILEGRKELTLNRERAEYVHNNLYIPDAQ 219 (546)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcchhhheechHHHHHHHhhhcCcchH
Confidence 9999999988777776776666666666666666677777788899999999999999998764332221 11211111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000984 275 TAYKSGVQEGLAAGIGLGMVMLIVFCSYALSVWYGGKLILEEGYNGGQVVN-VMVAVLTGSMSLGEASPCLSAFGAGQAA 353 (1198)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~-~~~~~l~~~~~l~~~~~~~~~~~~~~~~ 353 (1198)
...+.......+.-......++..+......+|... ........+.. .....+....++.++...++.+..+.++
T Consensus 220 ~~r~~~~~~n~f~~la~~~~ni~l~~lIGlvf~lal----~~~w~st~~a~tivlvlLflr~pL~s~vgilP~l~~AqvA 295 (546)
T COG4615 220 EYRHHIIRANTFHLLAVNWSNIMLLGLIGLVFWLAL----SLGWASTNVAATIVLVLLFLRTPLLSAVGILPTLLTAQVA 295 (546)
T ss_pred HHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH----hhccchhhHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHH
Confidence 111111111111000111112222222222333222 11222222222 2222333345677777777788888899
Q ss_pred HHHHHHHHccCCCCCccCCCCcccCCCcccEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHh
Q 000984 354 AFKMFETINRKPEIDAYDTKGKILDDIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIE 433 (1198)
Q Consensus 354 ~~r~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~ 433 (1198)
..++.+.-..++..+... +++.++++ .|+++||.|.|+.. ..-+..||++|++||+|-|+|.|||||||++++|.
T Consensus 296 ~~kiakle~~~~~a~~~~--~q~~p~~~-~lelrnvrfay~~~--~FhvgPiNl~ikrGelvFliG~NGsGKST~~~LLt 370 (546)
T COG4615 296 FNKIAKLELAPYKADFPR--PQAFPDWK-TLELRNVRFAYQDN--AFHVGPINLTIKRGELVFLIGGNGSGKSTLAMLLT 370 (546)
T ss_pred HHHHHHhhcCCccccCCC--CCcCCccc-ceeeeeeeeccCcc--cceecceeeEEecCcEEEEECCCCCcHHHHHHHHh
Confidence 988877654333222111 12223343 59999999999743 35688999999999999999999999999999999
Q ss_pred ccCCCCCCeEEECCeecCCcCHHHHhcceEEEcCCCCCCcccHHHHHhcCCCC-CCHHHHHHHHHHhcHHHHHHhCCCCc
Q 000984 434 RFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDD-ATTEEIRVATELANAAKFIDKLPQGI 512 (1198)
Q Consensus 434 g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~Ni~~~~~~-~~~~~~~~~~~~~~~~~~i~~l~~g~ 512 (1198)
|+|.|++|+|.+||.++..-+++++|+-++-|+-|-|||+.++ |.+. ++++.+...++.-.+.... ++.+|-
T Consensus 371 GL~~PqsG~I~ldg~pV~~e~ledYR~LfSavFsDyhLF~~ll------~~e~~as~q~i~~~LqrLel~~kt-sl~d~~ 443 (546)
T COG4615 371 GLYQPQSGEILLDGKPVSAEQLEDYRKLFSAVFSDYHLFDQLL------GPEGKASPQLIEKWLQRLELAHKT-SLNDGR 443 (546)
T ss_pred cccCCCCCceeECCccCCCCCHHHHHHHHHHHhhhHhhhHhhh------CCccCCChHHHHHHHHHHHHhhhh-cccCCc
Confidence 9999999999999999999999999999999999999998766 4333 5666666666555444332 222221
Q ss_pred cchhcCCCCCCChHHHHHHhHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh--CCCeEEEEecCcchhhccCEE
Q 000984 513 DTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIM--VNRTTVIVAHRLSTVRNADMI 590 (1198)
Q Consensus 513 ~t~v~~~g~~lSgGqkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~--~~~t~i~itH~~~~~~~~d~i 590 (1198)
-+ ...||-|||.|+|+--|++-+.|||+|||=-+--||.-.+.+.+.+...+ +|||++.|||+-.+...|||+
T Consensus 444 fs-----~~kLStGQkKRlAll~AllEeR~Ilv~DEWAADQDPaFRR~FY~~lLp~LK~qGKTI~aIsHDd~YF~~ADrl 518 (546)
T COG4615 444 FS-----NLKLSTGQKKRLALLLALLEERDILVLDEWAADQDPAFRREFYQVLLPLLKEQGKTIFAISHDDHYFIHADRL 518 (546)
T ss_pred cc-----ccccccchHHHHHHHHHHHhhCCeEEeehhhccCChHHHHHHHHHHhHHHHHhCCeEEEEecCchhhhhHHHH
Confidence 11 14599999999999999999999999999999999999998877765443 489999999999999999999
Q ss_pred EEEeCCEEEEe
Q 000984 591 AVIHRGKIVEK 601 (1198)
Q Consensus 591 ~~l~~G~i~~~ 601 (1198)
+.|++|+++|.
T Consensus 519 l~~~~G~~~e~ 529 (546)
T COG4615 519 LEMRNGQLSEL 529 (546)
T ss_pred HHHhcCceeec
Confidence 99999999875
|
|
| >COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-42 Score=368.86 Aligned_cols=215 Identities=38% Similarity=0.639 Sum_probs=191.8
Q ss_pred cEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecC-CcCHHHHhcc
Q 000984 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLK-EFQLQWIRKK 461 (1198)
Q Consensus 383 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~-~~~~~~~r~~ 461 (1198)
.++++|++|+|+++ .++|+++||+|++||.++|+|+||||||||+++|.|++.|++|.|.++|.++. +.+...+|++
T Consensus 3 ~i~~~~l~~~y~~~--~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~~~~~ 80 (235)
T COG1122 3 MIEAENLSFRYPGR--KAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLELRQK 80 (235)
T ss_pred eEEEEEEEEEcCCC--ceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchhhHHHhhcc
Confidence 48899999999765 57999999999999999999999999999999999999999999999999998 4889999999
Q ss_pred eEEEcCCC--CCCcccHHHHHhcCCCCC--CH----HHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhH
Q 000984 462 IGLVSQEP--VLFTGSIKDNIAYGKDDA--TT----EEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAI 533 (1198)
Q Consensus 462 i~~v~Q~~--~l~~~ti~~Ni~~~~~~~--~~----~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~l 533 (1198)
+|||+|+| ++|..||.|.+.||..+. +. +++.++++.+++.+ ...+...+||||||||+||
T Consensus 81 vG~VfQnpd~q~~~~tV~~evafg~~n~g~~~~e~~~rv~~~l~~vgl~~-----------~~~r~p~~LSGGqkqRvaI 149 (235)
T COG1122 81 VGLVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIEERVAEALELVGLEE-----------LLDRPPFNLSGGQKQRVAI 149 (235)
T ss_pred eEEEEECcccccccCcHHHHHhhchhhcCCCHHHHHHHHHHHHHHcCchh-----------hccCCccccCCcceeeHHh
Confidence 99999999 899999999999986542 23 33445555555444 3455667999999999999
Q ss_pred HHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhCC--CeEEEEecCcchhhc-cCEEEEEeCCEEEEecChhhHhcC
Q 000984 534 ARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVN--RTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVED 610 (1198)
Q Consensus 534 ARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~--~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 610 (1198)
|.+|..+|+++|||||||+||+...+.+.+.++++.+. +|+|++||+++.+.. ||++++|++|+++.+|+|+++.++
T Consensus 150 A~vLa~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~~~~~~ad~v~vl~~G~i~~~g~p~~i~~~ 229 (235)
T COG1122 150 AGVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLELVLEYADRVVVLDDGKILADGDPAEIFND 229 (235)
T ss_pred hHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHHHHHhhCCEEEEEECCEEeecCCHHHHhhh
Confidence 99999999999999999999999999999999988654 799999999999877 999999999999999999998765
|
|
| >cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-41 Score=370.08 Aligned_cols=219 Identities=42% Similarity=0.738 Sum_probs=200.5
Q ss_pred cEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcce
Q 000984 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKI 462 (1198)
Q Consensus 383 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i 462 (1198)
.|+++|++++|+.. ..++|+|+||++++||+++|+||||||||||+++|.|+.+|.+|+|.++|.++...+...+|+.+
T Consensus 2 ~l~~~~l~~~~~~~-~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 80 (220)
T cd03245 2 RIEFRNVSFSYPNQ-EIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADLRRNI 80 (220)
T ss_pred eEEEEEEEEEcCCC-CcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEEhHHCCHHHHHhhE
Confidence 58999999999642 24699999999999999999999999999999999999999999999999998877777778899
Q ss_pred EEEcCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhhccCCC
Q 000984 463 GLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPR 542 (1198)
Q Consensus 463 ~~v~Q~~~l~~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal~~~~~ 542 (1198)
+|++|+|++|..|++||+.++......+++.+.++..++.+.+...|.|++|.+.+...+||||||||++||||++.+|+
T Consensus 81 ~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al~~~p~ 160 (220)
T cd03245 81 GYVPQDVTLFYGTLRDNITLGAPLADDERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPP 160 (220)
T ss_pred EEeCCCCccccchHHHHhhcCCCCCCHHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHHHhcCCC
Confidence 99999999998999999988655445667778888889989999999999999998899999999999999999999999
Q ss_pred EEEEeCCCCCCCHHhHHHHHHHHHHHhCCCeEEEEecCcchhhccCEEEEEeCCEEEEec
Q 000984 543 ILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKG 602 (1198)
Q Consensus 543 illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g 602 (1198)
++||||||++||+.+...+.+.|+++.+++|+|++||+++.+..||+|++|++|++++.|
T Consensus 161 llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~d~v~~l~~g~i~~~~ 220 (220)
T cd03245 161 ILLLDEPTSAMDMNSEERLKERLRQLLGDKTLIIITHRPSLLDLVDRIIVMDSGRIVADG 220 (220)
T ss_pred EEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHhCCEEEEEeCCeEeecC
Confidence 999999999999999999999999886668999999999988789999999999998754
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. |
| >COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-42 Score=333.93 Aligned_cols=209 Identities=33% Similarity=0.571 Sum_probs=184.7
Q ss_pred EEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcceE
Q 000984 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIG 463 (1198)
Q Consensus 384 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~ 463 (1198)
|.+++|.|+|...+ =..+++|++||++||+||||||||||++++.|+..|.+|+|.|+|+|....++.+ +-++
T Consensus 2 l~L~~V~~~y~~~~-----~~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~~P~~--RPVS 74 (231)
T COG3840 2 LALDDVRFSYGHLP-----MRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPAE--RPVS 74 (231)
T ss_pred ccccceEEeeCcce-----EEEEEeecCCcEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCcCCccc--CChh
Confidence 56789999996432 2578999999999999999999999999999999999999999999998777653 5699
Q ss_pred EEcCCCCCCc-ccHHHHHhcCCCC------CCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHh
Q 000984 464 LVSQEPVLFT-GSIKDNIAYGKDD------ATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARA 536 (1198)
Q Consensus 464 ~v~Q~~~l~~-~ti~~Ni~~~~~~------~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARa 536 (1198)
+++||..||. -||++||.+|... ...+++..++..+++..+.+++|. .||||||||+||||+
T Consensus 75 mlFQEnNLFaHLtV~qNigLGl~P~LkL~a~~r~~v~~aa~~vGl~~~~~RLP~-----------~LSGGqRQRvALARc 143 (231)
T COG3840 75 MLFQENNLFAHLTVAQNIGLGLSPGLKLNAEQREKVEAAAAQVGLAGFLKRLPG-----------ELSGGQRQRVALARC 143 (231)
T ss_pred hhhhccccchhhhhhhhhcccCCcccccCHHHHHHHHHHHHHhChhhHhhhCcc-----------ccCchHHHHHHHHHH
Confidence 9999999995 7999999998532 234678888999999998888873 799999999999999
Q ss_pred hccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh--CCCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChhhHhcC
Q 000984 537 ILKDPRILLLDEATSALDAESEKVVQEALDRIM--VNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVED 610 (1198)
Q Consensus 537 l~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~--~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 610 (1198)
++++.+|++||||+|+|||.-...+...+.++. ++.|+++|||+++.+.. +|+++++++|+|.++|+.+++...
T Consensus 144 lvR~~PilLLDEPFsALdP~LR~eMl~Lv~~l~~E~~~TllmVTH~~~Da~~ia~~~~fl~~Gri~~~g~~~~~~~~ 220 (231)
T COG3840 144 LVREQPILLLDEPFSALDPALRAEMLALVSQLCDERKMTLLMVTHHPEDAARIADRVVFLDNGRIAAQGSTQELLSG 220 (231)
T ss_pred HhccCCeEEecCchhhcCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhhhceEEEeCCEEEeeccHHHHhcc
Confidence 999999999999999999998888877776665 46799999999998876 999999999999999999998865
|
|
| >COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-42 Score=385.92 Aligned_cols=217 Identities=34% Similarity=0.566 Sum_probs=190.6
Q ss_pred cEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcce
Q 000984 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKI 462 (1198)
Q Consensus 383 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i 462 (1198)
.|+++|++.+|+ +..+++|+||+|++||++++.|||||||||||++|.|+..|++|+|.+||.|+..++++ ++.|
T Consensus 5 ~l~i~~v~k~yg---~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lpp~--kR~i 79 (352)
T COG3842 5 ALEIRNVSKSFG---DFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPE--KRPI 79 (352)
T ss_pred eEEEEeeeeecC---CeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChh--hccc
Confidence 589999999996 35799999999999999999999999999999999999999999999999999999887 4689
Q ss_pred EEEcCCCCCC-cccHHHHHhcCCCC---CCH----HHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHH
Q 000984 463 GLVSQEPVLF-TGSIKDNIAYGKDD---ATT----EEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIA 534 (1198)
Q Consensus 463 ~~v~Q~~~l~-~~ti~~Ni~~~~~~---~~~----~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lA 534 (1198)
++|+|+.-|| ..||+|||.||... ..+ +++.++++.+++.++- .++...|||||+||+|||
T Consensus 80 g~VFQ~YALFPHltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~~~-----------~R~p~qLSGGQqQRVALA 148 (352)
T COG3842 80 GMVFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFA-----------DRKPHQLSGGQQQRVALA 148 (352)
T ss_pred ceeecCcccCCCCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchhhh-----------hhChhhhChHHHHHHHHH
Confidence 9999999999 58999999998651 122 3566677777665543 445578999999999999
Q ss_pred HhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhC--CCeEEEEecCcchh-hccCEEEEEeCCEEEEecChhhHhcCC
Q 000984 535 RAILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTV-RNADMIAVIHRGKIVEKGTHSKLVEDP 611 (1198)
Q Consensus 535 Ral~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~-~~~d~i~~l~~G~i~~~g~~~~l~~~~ 611 (1198)
|||..+|++||||||+||||.+-...++.-++++.+ +.|.|+|||+.+.. .-+|||.||++|+|...|+|+|+...+
T Consensus 149 RAL~~~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDqeEAl~msDrI~Vm~~G~I~Q~gtP~eiY~~P 228 (352)
T COG3842 149 RALVPEPKVLLLDEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQEEALAMSDRIAVMNDGRIEQVGTPEEIYERP 228 (352)
T ss_pred HHhhcCcchhhhcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhccceEEccCCceeecCCHHHHhhCc
Confidence 999999999999999999999998888888876543 78999999999875 569999999999999999999999876
Q ss_pred Cchh
Q 000984 612 EGAY 615 (1198)
Q Consensus 612 ~~~~ 615 (1198)
...|
T Consensus 229 ~~~f 232 (352)
T COG3842 229 ATRF 232 (352)
T ss_pred chHH
Confidence 5444
|
|
| >COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-42 Score=357.27 Aligned_cols=205 Identities=34% Similarity=0.512 Sum_probs=171.0
Q ss_pred EEEEeEEEEcCCCCC-CccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCH---HHHh
Q 000984 384 IELRDVYFSYPARPN-EQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQL---QWIR 459 (1198)
Q Consensus 384 i~~~~v~~~y~~~~~-~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~---~~~r 459 (1198)
++++|++..|..... ..+|+++||+|++||+++|+||||||||||+++|.|+..|++|.|.++|.|+..++. ..+|
T Consensus 2 i~~~~v~k~y~~~~~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~~R 81 (226)
T COG1136 2 IELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKLR 81 (226)
T ss_pred cEEeeeEEEeccCCcceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHHHH
Confidence 578999999964322 469999999999999999999999999999999999999999999999999998874 3344
Q ss_pred -cceEEEcCCCCCC-cccHHHHHhcCCC--CCCH----HHHHHHHHHhcHHHHHHhCCCCccchhc-CCCCCCChHHHHH
Q 000984 460 -KKIGLVSQEPVLF-TGSIKDNIAYGKD--DATT----EEIRVATELANAAKFIDKLPQGIDTLVG-EHGTQLSGGQKQR 530 (1198)
Q Consensus 460 -~~i~~v~Q~~~l~-~~ti~~Ni~~~~~--~~~~----~~~~~~~~~~~~~~~i~~l~~g~~t~v~-~~g~~lSgGqkqr 530 (1198)
++||||+|+..|+ +-|++|||.++.. .... ++....++.. |+..... .....||||||||
T Consensus 82 ~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~l-----------gl~~~~~~~~p~eLSGGqqQR 150 (226)
T COG1136 82 RKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRRKRAAEELLEVL-----------GLEDRLLKKKPSELSGGQQQR 150 (226)
T ss_pred HHhEEEECccCCCCCCCCHHHHHHhHHHHcCCChhHHHHHHHHHHHhc-----------CChhhhccCCchhcCHHHHHH
Confidence 6799999999988 5699999995321 1111 2222222222 4443333 5567899999999
Q ss_pred HhHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh--CCCeEEEEecCcchhhccCEEEEEeCCEEE
Q 000984 531 IAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIM--VNRTTVIVAHRLSTVRNADMIAVIHRGKIV 599 (1198)
Q Consensus 531 i~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~--~~~t~i~itH~~~~~~~~d~i~~l~~G~i~ 599 (1198)
+||||||+.+|+|++.||||++||.++.+.+.+.++++. .++|+|+|||+......|||++.|++|++.
T Consensus 151 VAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~lA~~~dr~i~l~dG~~~ 221 (226)
T COG1136 151 VAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELAKYADRVIELKDGKIE 221 (226)
T ss_pred HHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHhCCEEEEEeCCeee
Confidence 999999999999999999999999999999999998874 368999999999999999999999999954
|
|
| >COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-42 Score=339.01 Aligned_cols=207 Identities=29% Similarity=0.507 Sum_probs=183.5
Q ss_pred EEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcC---HHHHhc
Q 000984 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQ---LQWIRK 460 (1198)
Q Consensus 384 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~---~~~~r~ 460 (1198)
|+|+||+.+|+.. +++|+||||+|++||++.|+||||||||||+++|+++..|+.|+|.++|+|+..+. ..-+|+
T Consensus 2 I~f~~V~k~Y~~g--~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~LRR 79 (223)
T COG2884 2 IRFENVSKAYPGG--REALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFLRR 79 (223)
T ss_pred eeehhhhhhcCCC--chhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccchhhh
Confidence 8999999999864 67999999999999999999999999999999999999999999999999998775 455799
Q ss_pred ceEEEcCCCCCC-cccHHHHHhcCCCC------CCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhH
Q 000984 461 KIGLVSQEPVLF-TGSIKDNIAYGKDD------ATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAI 533 (1198)
Q Consensus 461 ~i~~v~Q~~~l~-~~ti~~Ni~~~~~~------~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~l 533 (1198)
+||+|+||-.|. .-||.||++|+..- .-.+++.++++.++|.+....+| ..|||||+||+||
T Consensus 80 ~IGvVFQD~rLL~~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP-----------~~LSGGEQQRvaI 148 (223)
T COG2884 80 QIGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALP-----------SQLSGGEQQRVAI 148 (223)
T ss_pred eeeeEeeeccccccchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhcCc-----------cccCchHHHHHHH
Confidence 999999999877 57999999986421 11356777888888888777777 4799999999999
Q ss_pred HHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh-CCCeEEEEecCcchhhc-cCEEEEEeCCEEEEecC
Q 000984 534 ARAILKDPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGT 603 (1198)
Q Consensus 534 ARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~ 603 (1198)
|||+..+|++||-||||.+||+++...|.+.+.++- .|.||++.||+.+.+.. --|++.+++|+++....
T Consensus 149 ARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~lv~~~~~rvl~l~~Grl~~d~~ 220 (223)
T COG2884 149 ARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLELVNRMRHRVLALEDGRLVRDES 220 (223)
T ss_pred HHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHHHHHhccCcEEEEeCCEEEeccc
Confidence 999999999999999999999999999998888763 58999999999999987 57899999999986543
|
|
| >COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-42 Score=352.81 Aligned_cols=226 Identities=30% Similarity=0.479 Sum_probs=185.2
Q ss_pred cEEEEeEEEEcCCCCC-CccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCc-CHHHHhc
Q 000984 383 DIELRDVYFSYPARPN-EQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEF-QLQWIRK 460 (1198)
Q Consensus 383 ~i~~~~v~~~y~~~~~-~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~-~~~~~r~ 460 (1198)
.++++|+++.|+.... .++|+||||+|.+||.+||+|+||||||||.++|+|+.+|++|+|.++|.++... .....++
T Consensus 3 ~l~v~nl~~~y~~~~~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~~~ 82 (252)
T COG1124 3 LLSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFYR 82 (252)
T ss_pred eEEEeceEEEecCCcchhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchhhcc
Confidence 4889999999975321 2599999999999999999999999999999999999999999999999776554 3346678
Q ss_pred ceEEEcCCCC-CCc--ccHHHHHhcCCC----CCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhH
Q 000984 461 KIGLVSQEPV-LFT--GSIKDNIAYGKD----DATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAI 533 (1198)
Q Consensus 461 ~i~~v~Q~~~-l~~--~ti~~Ni~~~~~----~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~l 533 (1198)
.|-+|+|||. -+| -||++-|.=+.. .....+++++++.+++.+. ...+....|||||||||||
T Consensus 83 ~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~~~~~~~~~i~~~L~~VgL~~~----------~l~R~P~eLSGGQ~QRiaI 152 (252)
T COG1124 83 PVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKSQQRIAELLDQVGLPPS----------FLDRRPHELSGGQRQRIAI 152 (252)
T ss_pred ceeEEecCCccccCcchhHHHHHhhhhccCCccHHHHHHHHHHHHcCCCHH----------HHhcCchhcChhHHHHHHH
Confidence 9999999995 232 467666642211 1223456666666655432 3355667899999999999
Q ss_pred HHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhCCC--eEEEEecCcchhhc-cCEEEEEeCCEEEEecChhhHhcC
Q 000984 534 ARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNR--TTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVED 610 (1198)
Q Consensus 534 ARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~--t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 610 (1198)
||||.-+|++||||||||+||+.....|.+.+.++.+++ |.|+|||++..+.+ ||||+||++|+++|.++.+++...
T Consensus 153 ARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~~v~~~cdRi~Vm~~G~ivE~~~~~~l~~~ 232 (252)
T COG1124 153 ARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLALVEHMCDRIAVMDNGQIVEIGPTEELLSH 232 (252)
T ss_pred HHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHHHHHHHhhheeeeeCCeEEEeechhhhhcC
Confidence 999999999999999999999999999999998887655 99999999999987 999999999999999999999876
Q ss_pred CCchhHHH
Q 000984 611 PEGAYSQL 618 (1198)
Q Consensus 611 ~~~~~~~~ 618 (1198)
+...|.+.
T Consensus 233 ~~h~ytr~ 240 (252)
T COG1124 233 PSHPYTRE 240 (252)
T ss_pred CccHHHHH
Confidence 55555543
|
|
| >COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-42 Score=348.41 Aligned_cols=213 Identities=33% Similarity=0.550 Sum_probs=184.9
Q ss_pred cEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcC---HHHHh
Q 000984 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQ---LQWIR 459 (1198)
Q Consensus 383 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~---~~~~r 459 (1198)
.|+++||+..||+ ++.+|+||||+|++||+|+|+||||||||||+++|.|+.+|++|+|.++|.++.... +..+|
T Consensus 3 ~i~~~nl~k~yp~--~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k~lr~~r 80 (258)
T COG3638 3 MIEVKNLSKTYPG--GHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKLR 80 (258)
T ss_pred eEEEeeeeeecCC--CceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchHHHHHHH
Confidence 5899999999984 467999999999999999999999999999999999999999999999999988776 66778
Q ss_pred cceEEEcCCCCCC-cccHHHHHhcCCCCC-----------CHHHH---HHHHHHhcHHHHHHhCCCCccchhcCCCCCCC
Q 000984 460 KKIGLVSQEPVLF-TGSIKDNIAYGKDDA-----------TTEEI---RVATELANAAKFIDKLPQGIDTLVGEHGTQLS 524 (1198)
Q Consensus 460 ~~i~~v~Q~~~l~-~~ti~~Ni~~~~~~~-----------~~~~~---~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lS 524 (1198)
+++|+++|++.|. ..||-+|++.|.-.+ +.++. .++++.+ |+.-..-.+..+||
T Consensus 81 ~~iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLerv-----------gi~~~A~qra~~LS 149 (258)
T COG3638 81 RDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERV-----------GILDKAYQRASTLS 149 (258)
T ss_pred HhceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHc-----------CcHHHHHHHhccCC
Confidence 9999999999988 579999999875432 23332 3333333 44444455667899
Q ss_pred hHHHHHHhHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh--CCCeEEEEecCcchhhc-cCEEEEEeCCEEEEe
Q 000984 525 GGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIM--VNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEK 601 (1198)
Q Consensus 525 gGqkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~--~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~ 601 (1198)
|||+||++|||||+++|+|+|-|||+|+|||.+.+.+.+.+++.. .+.|+|+.-|.+++.+. ||||+-|++|+|+..
T Consensus 150 GGQQQRVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vdlA~~Y~~Riigl~~G~ivfD 229 (258)
T COG3638 150 GGQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDLAKKYADRIIGLKAGRIVFD 229 (258)
T ss_pred cchhHHHHHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHHhhheEecCCcEEEe
Confidence 999999999999999999999999999999999999999998764 46899999999999865 999999999999999
Q ss_pred cChhhHh
Q 000984 602 GTHSKLV 608 (1198)
Q Consensus 602 g~~~~l~ 608 (1198)
|+++|+-
T Consensus 230 g~~~el~ 236 (258)
T COG3638 230 GPASELT 236 (258)
T ss_pred CChhhhh
Confidence 9999863
|
|
| >PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-41 Score=386.15 Aligned_cols=222 Identities=26% Similarity=0.476 Sum_probs=188.6
Q ss_pred ccEEEEeEEEEcCCCC--CCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCc------
Q 000984 382 GDIELRDVYFSYPARP--NEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEF------ 453 (1198)
Q Consensus 382 g~i~~~~v~~~y~~~~--~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~------ 453 (1198)
..|+++|++|+|+... +.++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++.+.
T Consensus 20 ~~l~~~nl~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~~~~~~~~~~~~ 99 (320)
T PRK13631 20 IILRVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNHEL 99 (320)
T ss_pred ceEEEEeEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCEEcccccccccc
Confidence 3589999999996421 24699999999999999999999999999999999999999999999999998653
Q ss_pred ----------CHHHHhcceEEEcCCC--CCCcccHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHHhCCCCcc-chhcC
Q 000984 454 ----------QLQWIRKKIGLVSQEP--VLFTGSIKDNIAYGKDD--ATTEEIRVATELANAAKFIDKLPQGID-TLVGE 518 (1198)
Q Consensus 454 ----------~~~~~r~~i~~v~Q~~--~l~~~ti~~Ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~-t~v~~ 518 (1198)
+...+|++++||+|+| ++|..|++|||.|+... .+.++..+ ...+.++.+ |++ ...++
T Consensus 100 ~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~-----~~~~~l~~~--gL~~~~~~~ 172 (320)
T PRK13631 100 ITNPYSKKIKNFKELRRRVSMVFQFPEYQLFKDTIEKDIMFGPVALGVKKSEAKK-----LAKFYLNKM--GLDDSYLER 172 (320)
T ss_pred cccccccccchHHHHHhcEEEEEECchhccccchHHHHHHhhHHhcCCCHHHHHH-----HHHHHHHHc--CCChhHhcC
Confidence 3567889999999998 79999999999986321 23333221 112344444 664 46788
Q ss_pred CCCCCChHHHHHHhHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh-CCCeEEEEecCcchhh-ccCEEEEEeCC
Q 000984 519 HGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVR-NADMIAVIHRG 596 (1198)
Q Consensus 519 ~g~~lSgGqkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~-~~d~i~~l~~G 596 (1198)
.+.+||||||||++|||||+++|++|||||||++||+.+.+.+.+.+.++. +++|+|+|||+++.+. .||+|++|++|
T Consensus 173 ~~~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~g~TiiivtHd~~~~~~~adri~vl~~G 252 (320)
T PRK13631 173 SPFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTMEHVLEVADEVIVMDKG 252 (320)
T ss_pred CcccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECC
Confidence 889999999999999999999999999999999999999999999998764 4789999999999875 59999999999
Q ss_pred EEEEecChhhHhcC
Q 000984 597 KIVEKGTHSKLVED 610 (1198)
Q Consensus 597 ~i~~~g~~~~l~~~ 610 (1198)
++++.|+++++...
T Consensus 253 ~i~~~g~~~~~~~~ 266 (320)
T PRK13631 253 KILKTGTPYEIFTD 266 (320)
T ss_pred EEEEeCCHHHHhcC
Confidence 99999999998764
|
|
| >COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-41 Score=360.27 Aligned_cols=210 Identities=29% Similarity=0.495 Sum_probs=182.9
Q ss_pred cEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcce
Q 000984 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKI 462 (1198)
Q Consensus 383 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i 462 (1198)
.|+++|++|+|.++ ++|+||||++++|++++|+||||||||||+++|+|++.|.+|+|.+.|.+.++... +.+|
T Consensus 4 ~i~v~nl~v~y~~~---~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~---~~~I 77 (254)
T COG1121 4 MIEVENLTVSYGNR---PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRK---RLRI 77 (254)
T ss_pred EEEEeeeEEEECCE---eeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEcccccccccc---CCeE
Confidence 58999999999632 59999999999999999999999999999999999999999999999987765443 4589
Q ss_pred EEEcCCC---CCCcccHHHHHhcCCCCC----------CHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHH
Q 000984 463 GLVSQEP---VLFTGSIKDNIAYGKDDA----------TTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQ 529 (1198)
Q Consensus 463 ~~v~Q~~---~l~~~ti~~Ni~~~~~~~----------~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkq 529 (1198)
|||||.. |-|.-||+|-+.+|.... +.+++.++++.+++.++. ...-..|||||+|
T Consensus 78 gYVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~-----------~r~i~~LSGGQ~Q 146 (254)
T COG1121 78 GYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLR-----------DRQIGELSGGQKQ 146 (254)
T ss_pred EEcCcccccCCCCCcCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCchhhh-----------CCcccccCcHHHH
Confidence 9999965 778999999999874321 247788888888776543 3334569999999
Q ss_pred HHhHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhC-CCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChhhH
Q 000984 530 RIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMV-NRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKL 607 (1198)
Q Consensus 530 ri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~-~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l 607 (1198)
|+.|||||.++|++|+|||||+++|+.++..|.+.|+++.+ ++||++|||+++.+.. +|+|+.| |+++...|++++.
T Consensus 147 RV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~tIl~vtHDL~~v~~~~D~vi~L-n~~~~~~G~~~~~ 225 (254)
T COG1121 147 RVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLGLVMAYFDRVICL-NRHLIASGPPEEV 225 (254)
T ss_pred HHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCcHHhHhhCCEEEEE-cCeeEeccChhhc
Confidence 99999999999999999999999999999999999998865 8999999999998865 9999999 5688899999998
Q ss_pred hcC
Q 000984 608 VED 610 (1198)
Q Consensus 608 ~~~ 610 (1198)
...
T Consensus 226 ~~~ 228 (254)
T COG1121 226 LTE 228 (254)
T ss_pred cCH
Confidence 764
|
|
| >cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-41 Score=369.49 Aligned_cols=220 Identities=50% Similarity=0.832 Sum_probs=197.6
Q ss_pred CCcccEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHH
Q 000984 379 DIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWI 458 (1198)
Q Consensus 379 ~~~g~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~ 458 (1198)
...+.++++|++++|+++...++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+....
T Consensus 7 ~~~~~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~ 86 (226)
T cd03248 7 HLKGIVKFQNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKYL 86 (226)
T ss_pred CcCceEEEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCCchHHcCHHHH
Confidence 34577999999999975333469999999999999999999999999999999999999999999999999887777778
Q ss_pred hcceEEEcCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhhc
Q 000984 459 RKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAIL 538 (1198)
Q Consensus 459 r~~i~~v~Q~~~l~~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal~ 538 (1198)
+++++|++|+|.+|..|++||+.++.......++.+..+...+.+.++.+|.|+++.+.+...+||||||||++||||++
T Consensus 87 ~~~i~~~~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgG~~qrv~laral~ 166 (226)
T cd03248 87 HSKVSLVGQEPVLFARSLQDNIAYGLQSCSFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARALI 166 (226)
T ss_pred HhhEEEEecccHHHhhhHHHHhccccCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHh
Confidence 88999999999999999999999865544444555555556778889999989999999999999999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhCCCeEEEEecCcchhhccCEEEEEeCCEE
Q 000984 539 KDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKI 598 (1198)
Q Consensus 539 ~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i 598 (1198)
++|+++||||||++||+++.+.+.+.++++.+++|+|++||+++.+..||+|++|++|++
T Consensus 167 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~i 226 (226)
T cd03248 167 RNPQVLILDEATSALDAESEQQVQQALYDWPERRTVLVIAHRLSTVERADQILVLDGGRI 226 (226)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHhCCEEEEecCCcC
Confidence 999999999999999999999999999988777899999999999988999999999974
|
Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. |
| >PRK13409 putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-41 Score=409.81 Aligned_cols=193 Identities=23% Similarity=0.371 Sum_probs=155.3
Q ss_pred EeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEE-----------ECCeecCCcCH
Q 000984 387 RDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVL-----------IDGINLKEFQL 455 (1198)
Q Consensus 387 ~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~-----------i~g~~~~~~~~ 455 (1198)
++++++|+. ...+|++++ .+++||+++|+||||||||||+++|+|+++|++|+|. ++|.++.+...
T Consensus 77 ~~~~~~yg~--~~~~L~~l~-~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~G~~l~~~~~ 153 (590)
T PRK13409 77 EEPVHRYGV--NGFKLYGLP-IPKEGKVTGILGPNGIGKTTAVKILSGELIPNLGDYEEEPSWDEVLKRFRGTELQNYFK 153 (590)
T ss_pred cCceEEecC--CceeEecCC-cCCCCCEEEEECCCCCCHHHHHHHHhCCccCCCccccCCCcHHHHHHHhCChHHHHHHH
Confidence 348899963 235899999 8999999999999999999999999999999999997 89988765432
Q ss_pred H--HHhcc----eEEEcCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHH
Q 000984 456 Q--WIRKK----IGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQ 529 (1198)
Q Consensus 456 ~--~~r~~----i~~v~Q~~~l~~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkq 529 (1198)
+ ..+.+ +.|++|.|.+|.+|++||+... ...+++.++++.. |++........+|||||||
T Consensus 154 ~~~~~~~~~~~~~q~~~~~p~~~~~tv~e~l~~~---~~~~~~~~~l~~l-----------~l~~~~~~~~~~LSgGe~q 219 (590)
T PRK13409 154 KLYNGEIKVVHKPQYVDLIPKVFKGKVRELLKKV---DERGKLDEVVERL-----------GLENILDRDISELSGGELQ 219 (590)
T ss_pred HHhccCcceeecccchhhhhhhhcchHHHHHHhh---hHHHHHHHHHHHc-----------CCchhhcCChhhCCHHHHH
Confidence 1 11123 4456667788889999999742 1123333333333 4444455666789999999
Q ss_pred HHhHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhCCCeEEEEecCcchhhc-cCEEEEEeCC
Q 000984 530 RIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRN-ADMIAVIHRG 596 (1198)
Q Consensus 530 ri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~-~d~i~~l~~G 596 (1198)
|++||||++++|++||||||||+||+.+...+.+.|+++.+++|+|+|||+++.+.. ||+|++|++|
T Consensus 220 rv~ia~al~~~p~lllLDEPts~LD~~~~~~l~~~i~~l~~g~tvIivsHd~~~l~~~~D~v~vl~~~ 287 (590)
T PRK13409 220 RVAIAAALLRDADFYFFDEPTSYLDIRQRLNVARLIRELAEGKYVLVVEHDLAVLDYLADNVHIAYGE 287 (590)
T ss_pred HHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCC
Confidence 999999999999999999999999999999999999987668999999999999876 9999999753
|
|
| >COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-41 Score=357.51 Aligned_cols=217 Identities=32% Similarity=0.521 Sum_probs=183.7
Q ss_pred cEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCe---ecCCcCHHHHh
Q 000984 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGI---NLKEFQLQWIR 459 (1198)
Q Consensus 383 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~---~~~~~~~~~~r 459 (1198)
.|+++|++..|+. .++++|||++|+.||.+|+.||||||||||+++|.|+..|++|+|.+||. |.++...+ .
T Consensus 2 ~i~i~~~~~~~~~---~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~~~~~--~ 76 (345)
T COG1118 2 SIRINNVKKRFGA---FGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLAVR--D 76 (345)
T ss_pred ceeehhhhhhccc---ccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchhccchh--h
Confidence 4788999999964 45899999999999999999999999999999999999999999999999 66653333 4
Q ss_pred cceEEEcCCCCCC-cccHHHHHhcCCCC--------CCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHH
Q 000984 460 KKIGLVSQEPVLF-TGSIKDNIAYGKDD--------ATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQR 530 (1198)
Q Consensus 460 ~~i~~v~Q~~~l~-~~ti~~Ni~~~~~~--------~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqr 530 (1198)
++||+|+|+.-|| ..||.+||.||..- ....++.+.+++++|...- .....+||||||||
T Consensus 77 R~VGfvFQ~YALF~HmtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~la-----------~ryP~QLSGGQrQR 145 (345)
T COG1118 77 RKVGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLA-----------DRYPAQLSGGQRQR 145 (345)
T ss_pred cceeEEEechhhcccchHHhhhhhcccccccCCChhhHHHHHHHHHHHhcccchh-----------hcCchhcChHHHHH
Confidence 6899999999988 68999999999721 1234555556666654432 34457899999999
Q ss_pred HhHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhC--CCeEEEEecCcchhh-ccCEEEEEeCCEEEEecChhhH
Q 000984 531 IAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKGTHSKL 607 (1198)
Q Consensus 531 i~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l 607 (1198)
+||||||..+|++||||||+++||++..+.+++-+++... +.|+++|||+.+... .||||++|++|+|...|+++|.
T Consensus 146 VALARALA~eP~vLLLDEPf~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~eea~~ladrvvvl~~G~Ieqvg~p~ev 225 (345)
T COG1118 146 VALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQEEALELADRVVVLNQGRIEQVGPPDEV 225 (345)
T ss_pred HHHHHHhhcCCCeEeecCCchhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCHHHHHhhcceEEEecCCeeeeeCCHHHH
Confidence 9999999999999999999999999998888887776643 689999999998765 5999999999999999999999
Q ss_pred hcCCCchh
Q 000984 608 VEDPEGAY 615 (1198)
Q Consensus 608 ~~~~~~~~ 615 (1198)
...++..|
T Consensus 226 ~~~P~s~f 233 (345)
T COG1118 226 YDHPASRF 233 (345)
T ss_pred hcCCCccc
Confidence 88765443
|
|
| >cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-41 Score=368.05 Aligned_cols=210 Identities=38% Similarity=0.613 Sum_probs=178.3
Q ss_pred EEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccC-----CCCCCeEEECCeecCCcC--HH
Q 000984 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFY-----DPQAGEVLIDGINLKEFQ--LQ 456 (1198)
Q Consensus 384 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~-----~~~~G~i~i~g~~~~~~~--~~ 456 (1198)
|+++|++++|+. .++|+|+||++++||+++|+||||||||||+++|+|++ +|.+|+|.++|.++.+.+ ..
T Consensus 1 i~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 77 (227)
T cd03260 1 IELRDLNVYYGD---KHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVL 77 (227)
T ss_pred CEEEEEEEEcCC---ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcchHHH
Confidence 478999999964 36999999999999999999999999999999999999 999999999999988776 56
Q ss_pred HHhcceEEEcCCCCCCcccHHHHHhcCCCCC---C----HHHHHHHHHHhcHHHHHHhCCCCccchhcCC--CCCCChHH
Q 000984 457 WIRKKIGLVSQEPVLFTGSIKDNIAYGKDDA---T----TEEIRVATELANAAKFIDKLPQGIDTLVGEH--GTQLSGGQ 527 (1198)
Q Consensus 457 ~~r~~i~~v~Q~~~l~~~ti~~Ni~~~~~~~---~----~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~--g~~lSgGq 527 (1198)
.+|++++|++|++.+|..|++||+.++.... . ++++.++++.. |++...... +.+|||||
T Consensus 78 ~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~-----------~l~~~~~~~~~~~~LSgG~ 146 (227)
T cd03260 78 ELRRRVGMVFQKPNPFPGSIYDNVAYGLRLHGIKLKEELDERVEEALRKA-----------ALWDEVKDRLHALGLSGGQ 146 (227)
T ss_pred HHHhhEEEEecCchhccccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHc-----------CCChHHhccCCcccCCHHH
Confidence 6788999999999999889999998753211 1 12233333333 333333333 47899999
Q ss_pred HHHHhHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhCCCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChhh
Q 000984 528 KQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSK 606 (1198)
Q Consensus 528 kqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~ 606 (1198)
|||++||||++++|+++||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+.. ||+|++|++|++++.|++++
T Consensus 147 ~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 226 (227)
T cd03260 147 QQRLCLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKKEYTIVIVTHNMQQAARVADRTAFLLNGRLVEFGPTEQ 226 (227)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhhCcEEEEEeccHHHHHHhCCEEEEEeCCEEEEecCccc
Confidence 99999999999999999999999999999999999999988656899999999998764 99999999999999998765
Q ss_pred H
Q 000984 607 L 607 (1198)
Q Consensus 607 l 607 (1198)
+
T Consensus 227 ~ 227 (227)
T cd03260 227 I 227 (227)
T ss_pred C
Confidence 3
|
The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). |
| >PRK14269 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-41 Score=368.42 Aligned_cols=218 Identities=31% Similarity=0.473 Sum_probs=186.5
Q ss_pred cEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCC---CCCCeEEECCeecCCcCHHHHh
Q 000984 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYD---PQAGEVLIDGINLKEFQLQWIR 459 (1198)
Q Consensus 383 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~---~~~G~i~i~g~~~~~~~~~~~r 459 (1198)
.|+++|+++.|+. +++|+|+||++++||+++|+||||||||||+++|+|+++ |++|+|.++|.++.+.+...+|
T Consensus 2 ~~~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~ 78 (246)
T PRK14269 2 IAKTTNLNLFYGK---KQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALR 78 (246)
T ss_pred ceeeeeeEEEECC---EeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHHh
Confidence 3789999999963 469999999999999999999999999999999999984 6899999999999888888888
Q ss_pred cceEEEcCCCCCCcccHHHHHhcCCCCC--------CHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHH
Q 000984 460 KKIGLVSQEPVLFTGSIKDNIAYGKDDA--------TTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRI 531 (1198)
Q Consensus 460 ~~i~~v~Q~~~l~~~ti~~Ni~~~~~~~--------~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri 531 (1198)
++++|+||+|.+|..|++||+.++.... .++++.+.++.+++.+++ .....+.+.+||||||||+
T Consensus 79 ~~i~~~~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LS~G~~qrv 151 (246)
T PRK14269 79 KNVGMVFQQPNVFVKSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEV-------KDKLKQNALALSGGQQQRL 151 (246)
T ss_pred hhEEEEecCCccccccHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhh-------hHHhcCCcccCCHHHHHHH
Confidence 9999999999999999999998752110 112233334444332222 2345667789999999999
Q ss_pred hHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhCCCeEEEEecCcchhh-ccCEEEEEeCCEEEEecChhhHhcC
Q 000984 532 AIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKGTHSKLVED 610 (1198)
Q Consensus 532 ~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~~ 610 (1198)
+||||++++|+++||||||++||+.+...+.+.+.++.+++|+|++||+++.+. .||+|++|++|++++.|+++++...
T Consensus 152 ~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 231 (246)
T PRK14269 152 CIARALAIKPKLLLLDEPTSALDPISSGVIEELLKELSHNLSMIMVTHNMQQGKRVADYTAFFHLGELIEFGESKEFFEN 231 (246)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhhCcEEEEEECCEEEEECCHHHHHhC
Confidence 999999999999999999999999999999999998877899999999999886 5999999999999999999998764
|
|
| >cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-40 Score=365.66 Aligned_cols=217 Identities=35% Similarity=0.566 Sum_probs=182.1
Q ss_pred EEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCH---HHHhc
Q 000984 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQL---QWIRK 460 (1198)
Q Consensus 384 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~---~~~r~ 460 (1198)
|+++|++++|+. .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. ..+|+
T Consensus 1 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~ 77 (235)
T cd03261 1 IELRGLTKSFGG---RTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRLRR 77 (235)
T ss_pred CeEEEEEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccChhhHHHHhc
Confidence 468999999963 469999999999999999999999999999999999999999999999999887664 56788
Q ss_pred ceEEEcCCCCCCcc-cHHHHHhcCCC---CCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHh
Q 000984 461 KIGLVSQEPVLFTG-SIKDNIAYGKD---DATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARA 536 (1198)
Q Consensus 461 ~i~~v~Q~~~l~~~-ti~~Ni~~~~~---~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARa 536 (1198)
.++|++|++.+|.. |++||+.++.. ..+.++..+.. .+.++.+ |+.........+||||||||++||||
T Consensus 78 ~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~-----~~~l~~~--~l~~~~~~~~~~LSgG~~qrv~ia~a 150 (235)
T cd03261 78 RMGMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIV-----LEKLEAV--GLRGAEDLYPAELSGGMKKRVALARA 150 (235)
T ss_pred ceEEEccCcccCCCCcHHHHHHHHHhhccCCCHHHHHHHH-----HHHHHHc--CCchhhcCChhhCCHHHHHHHHHHHH
Confidence 99999999999875 99999987532 12222222111 1223333 44444455667899999999999999
Q ss_pred hccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhC--CCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChhhHhcC
Q 000984 537 ILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVED 610 (1198)
Q Consensus 537 l~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 610 (1198)
++++|+++||||||++||+.+.+.+.+.++++.+ ++|+|++||+++.+.. ||+|++|++|++++.|+++++...
T Consensus 151 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 227 (235)
T cd03261 151 LALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDGKIVAEGTPEELRAS 227 (235)
T ss_pred HhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhcCEEEEEECCeEEEecCHHHHcCC
Confidence 9999999999999999999999999999988753 7899999999998865 999999999999999999988654
|
The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-39 Score=362.63 Aligned_cols=208 Identities=29% Similarity=0.518 Sum_probs=178.4
Q ss_pred cEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCc-CHHHHhcc
Q 000984 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEF-QLQWIRKK 461 (1198)
Q Consensus 383 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~-~~~~~r~~ 461 (1198)
.+++++++..|| +..+++||||++++||+.||.|.||+|||||+++|.|+|+|++|+|.+||+.++-- +.+.+|..
T Consensus 4 ~l~~~~itK~f~---~~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~~GeI~v~G~~v~~~sP~dA~~~G 80 (501)
T COG3845 4 ALEMRGITKRFP---GVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIRVDGKEVRIKSPRDAIRLG 80 (501)
T ss_pred eEEEeccEEEcC---CEEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCcccCCcceEEECCEEeccCCHHHHHHcC
Confidence 489999999997 35689999999999999999999999999999999999999999999999999855 45667889
Q ss_pred eEEEcCCCCCC-cccHHHHHhcCCCCC-----CHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHH
Q 000984 462 IGLVSQEPVLF-TGSIKDNIAYGKDDA-----TTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIAR 535 (1198)
Q Consensus 462 i~~v~Q~~~l~-~~ti~~Ni~~~~~~~-----~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lAR 535 (1198)
||+|.|++.|+ +-|+.|||.+|.+.. +..+..+ .+.+..+++ |++-...+....||-|||||+.|-+
T Consensus 81 IGMVhQHF~Lv~~lTV~ENiiLg~e~~~~~~~~~~~~~~-----~i~~l~~~y--Gl~vdp~~~V~dLsVG~qQRVEIlK 153 (501)
T COG3845 81 IGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARA-----RIKELSERY--GLPVDPDAKVADLSVGEQQRVEILK 153 (501)
T ss_pred CcEEeeccccccccchhhhhhhcCccccccccCHHHHHH-----HHHHHHHHh--CCCCCccceeecCCcchhHHHHHHH
Confidence 99999999999 569999999997642 2222221 122233333 6666677777889999999999999
Q ss_pred hhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh-CCCeEEEEecCcchhhc-cCEEEEEeCCEEEE
Q 000984 536 AILKDPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVE 600 (1198)
Q Consensus 536 al~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~ 600 (1198)
|||++|++||||||||-|-|.....+++.++.+. +++|+|+|||++..+.. |||+-||.+|+++.
T Consensus 154 aLyr~a~iLILDEPTaVLTP~E~~~lf~~l~~l~~~G~tIi~ITHKL~Ev~~iaDrvTVLR~Gkvvg 220 (501)
T COG3845 154 ALYRGARLLILDEPTAVLTPQEADELFEILRRLAAEGKTIIFITHKLKEVMAIADRVTVLRRGKVVG 220 (501)
T ss_pred HHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhhCeeEEEeCCeEEe
Confidence 9999999999999999999998888888888775 58999999999999877 99999999999863
|
|
| >PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-40 Score=373.39 Aligned_cols=217 Identities=32% Similarity=0.542 Sum_probs=186.8
Q ss_pred cEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcce
Q 000984 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKI 462 (1198)
Q Consensus 383 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i 462 (1198)
.|+++|++++|+.....++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++.+.+...+|+++
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i 83 (279)
T PRK13650 4 IIEVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDIRHKI 83 (279)
T ss_pred eEEEEeEEEEcCCCCcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHHhhc
Confidence 48999999999743224699999999999999999999999999999999999999999999999999888888889999
Q ss_pred EEEcCCCC--CCcccHHHHHhcCCCC--CCH----HHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHH
Q 000984 463 GLVSQEPV--LFTGSIKDNIAYGKDD--ATT----EEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIA 534 (1198)
Q Consensus 463 ~~v~Q~~~--l~~~ti~~Ni~~~~~~--~~~----~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lA 534 (1198)
+|++|+|. ++..||+|||.|+... .+. +++.++++.. |++........+||||||||++||
T Consensus 84 ~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~-----------gL~~~~~~~~~~LSgGq~qrv~lA 152 (279)
T PRK13650 84 GMVFQNPDNQFVGATVEDDVAFGLENKGIPHEEMKERVNEALELV-----------GMQDFKEREPARLSGGQKQRVAIA 152 (279)
T ss_pred eEEEcChHHhcccccHHHHHHhhHHhCCCCHHHHHHHHHHHHHHC-----------CCHhHhhCCcccCCHHHHHHHHHH
Confidence 99999984 5678999999986321 222 2333444444 344444555678999999999999
Q ss_pred HhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhC--CCeEEEEecCcchhhccCEEEEEeCCEEEEecChhhHhcC
Q 000984 535 RAILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVED 610 (1198)
Q Consensus 535 Ral~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~ 610 (1198)
||++++|++|||||||++||+.+.+.+.+.++++.+ ++|+|++||+++.+..||+|++|++|++++.|+++++.+.
T Consensus 153 ral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~ 230 (279)
T PRK13650 153 GAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLDEVALSDRVLVMKNGQVESTSTPRELFSR 230 (279)
T ss_pred HHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEEECCHHHHHcC
Confidence 999999999999999999999999999999988753 7899999999999888999999999999999999988654
|
|
| >TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-41 Score=382.79 Aligned_cols=207 Identities=33% Similarity=0.538 Sum_probs=179.0
Q ss_pred CccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHH----hcceEEEcCCCCCCc-
Q 000984 399 EQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWI----RKKIGLVSQEPVLFT- 473 (1198)
Q Consensus 399 ~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~----r~~i~~v~Q~~~l~~- 473 (1198)
+.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++.+.+..++ |++++||+|++++|.
T Consensus 6 ~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~l~~~ 85 (363)
T TIGR01186 6 KKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFALFPH 85 (363)
T ss_pred ceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCcCCCC
Confidence 469999999999999999999999999999999999999999999999999999988877 789999999999996
Q ss_pred ccHHHHHhcCCCC--CCH----HHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhhccCCCEEEEe
Q 000984 474 GSIKDNIAYGKDD--ATT----EEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLD 547 (1198)
Q Consensus 474 ~ti~~Ni~~~~~~--~~~----~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal~~~~~illlD 547 (1198)
.||+|||.++... .+. +++.++++.+ |++...++...+||||||||++|||||+++|+|+|||
T Consensus 86 ~TV~eNi~~~~~~~~~~~~~~~~~~~~~l~~v-----------gL~~~~~~~p~~LSGGq~QRV~lARAL~~~p~iLLlD 154 (363)
T TIGR01186 86 MTILQNTSLGPELLGWPEQERKEKALELLKLV-----------GLEEYEHRYPDELSGGMQQRVGLARALAAEPDILLMD 154 (363)
T ss_pred CCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhc-----------CCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 6999999986432 112 2233333333 5555566777799999999999999999999999999
Q ss_pred CCCCCCCHHhHHHHHHHHHHHh--CCCeEEEEecCcchhh-ccCEEEEEeCCEEEEecChhhHhcCCCchhH
Q 000984 548 EATSALDAESEKVVQEALDRIM--VNRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKGTHSKLVEDPEGAYS 616 (1198)
Q Consensus 548 e~ts~lD~~~~~~i~~~i~~~~--~~~t~i~itH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~ 616 (1198)
||||+||+.+.+.+++.+.++. .++|+|+|||+++.+. .||+|++|++|++++.|++++++.++...|.
T Consensus 155 EP~saLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~~ea~~~~drI~vl~~G~iv~~g~~~ei~~~p~~~~~ 226 (363)
T TIGR01186 155 EAFSALDPLIRDSMQDELKKLQATLQKTIVFITHDLDEAIRIGDRIVIMKAGEIVQVGTPDEILRNPANEYV 226 (363)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEeeCCHHHHHhCcccHHH
Confidence 9999999999999999998774 3799999999999865 5999999999999999999999876544443
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact |
| >COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-40 Score=375.17 Aligned_cols=209 Identities=31% Similarity=0.488 Sum_probs=175.1
Q ss_pred cEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHH-Hhcc
Q 000984 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQW-IRKK 461 (1198)
Q Consensus 383 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~-~r~~ 461 (1198)
-++++|++.+|+. .++|+|+||++.+||.++++|.||||||||+|.|.|.|+|++|+|.+||....-.++.+ ....
T Consensus 8 ll~~~~i~K~Fgg---V~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~~G~I~~~G~~~~~~sp~~A~~~G 84 (500)
T COG1129 8 LLELRGISKSFGG---VKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPVAFSSPRDALAAG 84 (500)
T ss_pred eeeeecceEEcCC---ceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcccCCCceEEECCEEccCCCHHHHHhCC
Confidence 4889999999974 56999999999999999999999999999999999999999999999999998766544 4577
Q ss_pred eEEEcCCCCCC-cccHHHHHhcCCCCCC------HHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHH
Q 000984 462 IGLVSQEPVLF-TGSIKDNIAYGKDDAT------TEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIA 534 (1198)
Q Consensus 462 i~~v~Q~~~l~-~~ti~~Ni~~~~~~~~------~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lA 534 (1198)
|+.|.||+.|+ +-||.|||-+|..... ..+..+.++ +.+..+ |++........+||+||||.++||
T Consensus 85 I~~V~QEl~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~-----~~l~~l--g~~~~~~~~v~~LsiaqrQ~VeIA 157 (500)
T COG1129 85 IATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRAR-----ELLARL--GLDIDPDTLVGDLSIAQRQMVEIA 157 (500)
T ss_pred cEEEeechhccCCccHHHHhhcccccccCCCccCHHHHHHHHH-----HHHHHc--CCCCChhhhhhhCCHHHHHHHHHH
Confidence 99999999998 5799999988875332 233333222 223333 221114444457999999999999
Q ss_pred HhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh-CCCeEEEEecCcchhhc-cCEEEEEeCCEEEEe
Q 000984 535 RAILKDPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEK 601 (1198)
Q Consensus 535 Ral~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~ 601 (1198)
||+..+++|+|||||||+|+.+..+.+++.++++. ++.++|+||||++.+.. ||||.||.||+.+..
T Consensus 158 rAl~~~arllIlDEPTaaLt~~E~~~Lf~~ir~Lk~~Gv~ii~ISHrl~Ei~~i~DritVlRDG~~v~~ 226 (500)
T COG1129 158 RALSFDARVLILDEPTAALTVKETERLFDLIRRLKAQGVAIIYISHRLDEVFEIADRITVLRDGRVVGT 226 (500)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCcHHHHHHhcCEEEEEeCCEEeee
Confidence 99999999999999999999998888889998876 67999999999998865 999999999998754
|
|
| >PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-40 Score=380.76 Aligned_cols=216 Identities=30% Similarity=0.536 Sum_probs=185.5
Q ss_pred cEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcce
Q 000984 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKI 462 (1198)
Q Consensus 383 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i 462 (1198)
.|+++|++++|++ .++|+|+||++++||+++|+||||||||||+++|.|+++|++|+|.+||.++.+.+.. +++|
T Consensus 6 ~l~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~--~r~i 80 (351)
T PRK11432 6 FVVLKNITKRFGS---NTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSIQ--QRDI 80 (351)
T ss_pred EEEEEeEEEEECC---eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHH--HCCE
Confidence 5899999999963 4589999999999999999999999999999999999999999999999999876653 5789
Q ss_pred EEEcCCCCCCc-ccHHHHHhcCCCC--CCH----HHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHH
Q 000984 463 GLVSQEPVLFT-GSIKDNIAYGKDD--ATT----EEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIAR 535 (1198)
Q Consensus 463 ~~v~Q~~~l~~-~ti~~Ni~~~~~~--~~~----~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lAR 535 (1198)
+||+|++.+|. .|++|||.|+... .+. +++.++++.. |+..........||||||||++|||
T Consensus 81 g~vfQ~~~lfp~~tv~eNi~~~l~~~~~~~~~~~~~v~~~l~~~-----------gl~~~~~r~~~~LSgGq~QRVaLAR 149 (351)
T PRK11432 81 CMVFQSYALFPHMSLGENVGYGLKMLGVPKEERKQRVKEALELV-----------DLAGFEDRYVDQISGGQQQRVALAR 149 (351)
T ss_pred EEEeCCcccCCCCCHHHHHHHHHhHcCCCHHHHHHHHHHHHHHc-----------CCchhhcCChhhCCHHHHHHHHHHH
Confidence 99999999995 5999999987431 122 2333333333 3444445566789999999999999
Q ss_pred hhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhC--CCeEEEEecCcchhh-ccCEEEEEeCCEEEEecChhhHhcCCC
Q 000984 536 AILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKGTHSKLVEDPE 612 (1198)
Q Consensus 536 al~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~~~~ 612 (1198)
||+++|++||||||||+||+.+.+.+.+.|+++.+ ++|+|+|||+.+.+. .||+|++|++|+|++.|+++++..++.
T Consensus 150 aL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~e~~~laD~i~vm~~G~i~~~g~~~~~~~~p~ 229 (351)
T PRK11432 150 ALILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQSEAFAVSDTVIVMNKGKIMQIGSPQELYRQPA 229 (351)
T ss_pred HHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCCC
Confidence 99999999999999999999999999999988754 689999999999875 599999999999999999999987755
Q ss_pred ch
Q 000984 613 GA 614 (1198)
Q Consensus 613 ~~ 614 (1198)
..
T Consensus 230 ~~ 231 (351)
T PRK11432 230 SR 231 (351)
T ss_pred ch
Confidence 43
|
|
| >PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-40 Score=381.43 Aligned_cols=218 Identities=29% Similarity=0.514 Sum_probs=185.8
Q ss_pred cEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcce
Q 000984 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKI 462 (1198)
Q Consensus 383 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i 462 (1198)
.|+++|++++|+. +.++|+|+||++++||+++|+||||||||||+++|+|+.+|++|+|.+||.++.+.+.. +++|
T Consensus 3 ~l~i~~l~~~~~~--~~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~--~r~i 78 (356)
T PRK11650 3 GLKLQAVRKSYDG--KTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEPA--DRDI 78 (356)
T ss_pred EEEEEeEEEEeCC--CCEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHH--HCCE
Confidence 4899999999942 24699999999999999999999999999999999999999999999999999887764 4689
Q ss_pred EEEcCCCCCCc-ccHHHHHhcCCCC--CCH----HHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHH
Q 000984 463 GLVSQEPVLFT-GSIKDNIAYGKDD--ATT----EEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIAR 535 (1198)
Q Consensus 463 ~~v~Q~~~l~~-~ti~~Ni~~~~~~--~~~----~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lAR 535 (1198)
+||+|++.+|. .||+|||.|+... .+. +++.++++..+ ++........+||||||||++|||
T Consensus 79 g~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~~g-----------L~~~~~~~~~~LSgGq~QRvalAR 147 (356)
T PRK11650 79 AMVFQNYALYPHMSVRENMAYGLKIRGMPKAEIEERVAEAARILE-----------LEPLLDRKPRELSGGQRQRVAMGR 147 (356)
T ss_pred EEEeCCccccCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcC-----------ChhHhhCChhhCCHHHHHHHHHHH
Confidence 99999999995 6999999987431 122 22334444444 444445556789999999999999
Q ss_pred hhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhC--CCeEEEEecCcchhh-ccCEEEEEeCCEEEEecChhhHhcCCC
Q 000984 536 AILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKGTHSKLVEDPE 612 (1198)
Q Consensus 536 al~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~~~~ 612 (1198)
||+++|++||||||||+||+.+...+.+.++++.+ +.|+|+|||+++.+. .||+|++|++|++++.|+++++..++.
T Consensus 148 AL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~l~D~i~vl~~G~i~~~g~~~~~~~~p~ 227 (356)
T PRK11650 148 AIVREPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQVEAMTLADRVVVMNGGVAEQIGTPVEVYEKPA 227 (356)
T ss_pred HHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEECCHHHHHhCCc
Confidence 99999999999999999999999999999988754 689999999999775 599999999999999999999987754
Q ss_pred chh
Q 000984 613 GAY 615 (1198)
Q Consensus 613 ~~~ 615 (1198)
..|
T Consensus 228 ~~~ 230 (356)
T PRK11650 228 STF 230 (356)
T ss_pred cHH
Confidence 433
|
|
| >cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1) | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-40 Score=354.99 Aligned_cols=204 Identities=34% Similarity=0.600 Sum_probs=180.6
Q ss_pred cccEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhc
Q 000984 381 RGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRK 460 (1198)
Q Consensus 381 ~g~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~ 460 (1198)
.+.++++|++++|+.. ..++|+|+||+|++||+++|+|+||||||||+++|+|+++|.+|+|.++|.++.+.+...+|+
T Consensus 4 ~~~l~~~~l~~~~~~~-~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~ 82 (207)
T cd03369 4 HGEIEVENLSVRYAPD-LPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDLRS 82 (207)
T ss_pred CCeEEEEEEEEEeCCC-CcccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEhHHCCHHHHHh
Confidence 4569999999999742 246999999999999999999999999999999999999999999999999998888888889
Q ss_pred ceEEEcCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhhccC
Q 000984 461 KIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKD 540 (1198)
Q Consensus 461 ~i~~v~Q~~~l~~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal~~~ 540 (1198)
+++|++|+|.+|++|+++|+.+... .+.+++.++++ +++....|||||+||++||||++.+
T Consensus 83 ~i~~v~q~~~~~~~tv~~~l~~~~~-~~~~~~~~~l~------------------~~~~~~~LS~G~~qrv~laral~~~ 143 (207)
T cd03369 83 SLTIIPQDPTLFSGTIRSNLDPFDE-YSDEEIYGALR------------------VSEGGLNLSQGQRQLLCLARALLKR 143 (207)
T ss_pred hEEEEecCCcccCccHHHHhcccCC-CCHHHHHHHhh------------------ccCCCCcCCHHHHHHHHHHHHHhhC
Confidence 9999999999999999999986432 33333332221 3456789999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHhHHHHHHHHHHHhCCCeEEEEecCcchhhccCEEEEEeCCEEEEecCh
Q 000984 541 PRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTH 604 (1198)
Q Consensus 541 ~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~ 604 (1198)
|+++||||||++||+.+.+.+.+.++++.+++|+|++||+++.+..||++++|++|++.+.|++
T Consensus 144 p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~th~~~~~~~~d~v~~l~~g~i~~~g~~ 207 (207)
T cd03369 144 PRVLVLDEATASIDYATDALIQKTIREEFTNSTILTIAHRLRTIIDYDKILVMDAGEVKEYDHP 207 (207)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCEEEecCCC
Confidence 9999999999999999999999999988778999999999999888999999999999988764
|
NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. |
| >PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-40 Score=372.14 Aligned_cols=220 Identities=33% Similarity=0.583 Sum_probs=184.3
Q ss_pred EEEEeEEEEcCCCC--CCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcC--HHHHh
Q 000984 384 IELRDVYFSYPARP--NEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQ--LQWIR 459 (1198)
Q Consensus 384 i~~~~v~~~y~~~~--~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~--~~~~r 459 (1198)
|+++|++++|+... .+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+ ...+|
T Consensus 3 l~~~~l~~~y~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 82 (287)
T PRK13637 3 IKIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDIR 82 (287)
T ss_pred EEEEEEEEECCCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcCccHHHHh
Confidence 78999999997421 146999999999999999999999999999999999999999999999999997643 45678
Q ss_pred cceEEEcCCC--CCCcccHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHHhCCCCcc--chhcCCCCCCChHHHHHHhH
Q 000984 460 KKIGLVSQEP--VLFTGSIKDNIAYGKDD--ATTEEIRVATELANAAKFIDKLPQGID--TLVGEHGTQLSGGQKQRIAI 533 (1198)
Q Consensus 460 ~~i~~v~Q~~--~l~~~ti~~Ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~--t~v~~~g~~lSgGqkqri~l 533 (1198)
++++||||+| .+|..|++|||.++... .+.++..+.. .+.++.+ |++ +........||||||||++|
T Consensus 83 ~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~-----~~~l~~~--gL~~~~~~~~~~~~LSgGq~qrv~i 155 (287)
T PRK13637 83 KKVGLVFQYPEYQLFEETIEKDIAFGPINLGLSEEEIENRV-----KRAMNIV--GLDYEDYKDKSPFELSGGQKRRVAI 155 (287)
T ss_pred hceEEEecCchhccccccHHHHHHhHHHHCCCCHHHHHHHH-----HHHHHHc--CCCchhhccCCcccCCHHHHHHHHH
Confidence 8999999998 67889999999975321 2333222111 1222222 443 44567778999999999999
Q ss_pred HHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhC--CCeEEEEecCcchhh-ccCEEEEEeCCEEEEecChhhHhcC
Q 000984 534 ARAILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKGTHSKLVED 610 (1198)
Q Consensus 534 ARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~~ 610 (1198)
||||+.+|++|||||||++||+.+.+.+.+.++++.+ ++|+|++||+++.+. .||+|++|++|++++.|+++++.+.
T Consensus 156 AraL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~ 235 (287)
T PRK13637 156 AGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSMEDVAKLADRIIVMNKGKCELQGTPREVFKE 235 (287)
T ss_pred HHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhC
Confidence 9999999999999999999999999999999988753 789999999999885 5999999999999999999988654
|
|
| >PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-40 Score=380.44 Aligned_cols=222 Identities=35% Similarity=0.580 Sum_probs=186.8
Q ss_pred EEEEeEEEEcCCCC-CCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHH---Hh
Q 000984 384 IELRDVYFSYPARP-NEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQW---IR 459 (1198)
Q Consensus 384 i~~~~v~~~y~~~~-~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~---~r 459 (1198)
|+++|++++|+... +.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++..++..+ +|
T Consensus 2 i~i~~l~~~y~~~~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~ 81 (343)
T PRK11153 2 IELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELRKAR 81 (343)
T ss_pred EEEEeEEEEeCCCCCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHh
Confidence 78999999997311 356999999999999999999999999999999999999999999999999998876544 47
Q ss_pred cceEEEcCCCCCCc-ccHHHHHhcCCC--CCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHh
Q 000984 460 KKIGLVSQEPVLFT-GSIKDNIAYGKD--DATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARA 536 (1198)
Q Consensus 460 ~~i~~v~Q~~~l~~-~ti~~Ni~~~~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARa 536 (1198)
++|+|++|++.+|. .|++||+.++.. ..+.++..+ .+.+.++.+ |++........+||||||||++||||
T Consensus 82 ~~ig~v~q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~-----~~~~~l~~~--gL~~~~~~~~~~LSgGq~qRv~lAra 154 (343)
T PRK11153 82 RQIGMIFQHFNLLSSRTVFDNVALPLELAGTPKAEIKA-----RVTELLELV--GLSDKADRYPAQLSGGQKQRVAIARA 154 (343)
T ss_pred cCEEEEeCCCccCCCCcHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHHc--CCchhhhCChhhCCHHHHHHHHHHHH
Confidence 88999999999885 799999987532 122222211 112334443 55555566678899999999999999
Q ss_pred hccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhC--CCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChhhHhcCCC
Q 000984 537 ILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVEDPE 612 (1198)
Q Consensus 537 l~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~~ 612 (1198)
|+++|++|||||||++||+.+.+.+.+.|+++.+ ++|+|++||+++.+.. ||+|++|++|++++.|+++++...+.
T Consensus 155 L~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~~i~~~~d~v~~l~~G~i~~~g~~~~~~~~~~ 233 (343)
T PRK11153 155 LASNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMDVVKRICDRVAVIDAGRLVEQGTVSEVFSHPK 233 (343)
T ss_pred HHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCCC
Confidence 9999999999999999999999999999988753 6899999999999875 99999999999999999999986543
|
|
| >PRK14250 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-40 Score=361.82 Aligned_cols=220 Identities=34% Similarity=0.631 Sum_probs=187.3
Q ss_pred cEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcce
Q 000984 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKI 462 (1198)
Q Consensus 383 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i 462 (1198)
.++++|++++|++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+|+.+
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i 79 (241)
T PRK14250 3 EIEFKEVSYSSFG---KEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDLRRKI 79 (241)
T ss_pred eEEEEeEEEEeCC---eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcChHHhhhcE
Confidence 4889999999963 4699999999999999999999999999999999999999999999999999888777888899
Q ss_pred EEEcCCCCCCcccHHHHHhcCCCCCC--HHHHHHHHHHhcHHHHHHhCCCCcc-chhcCCCCCCChHHHHHHhHHHhhcc
Q 000984 463 GLVSQEPVLFTGSIKDNIAYGKDDAT--TEEIRVATELANAAKFIDKLPQGID-TLVGEHGTQLSGGQKQRIAIARAILK 539 (1198)
Q Consensus 463 ~~v~Q~~~l~~~ti~~Ni~~~~~~~~--~~~~~~~~~~~~~~~~i~~l~~g~~-t~v~~~g~~lSgGqkqri~lARal~~ 539 (1198)
+|++|+|.+|..|++||+.++..... .+++.+. ++.+ |++ .........||||||||++||||+++
T Consensus 80 ~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~---------l~~~--~l~~~~~~~~~~~LS~G~~qrl~la~al~~ 148 (241)
T PRK14250 80 GMVFQQPHLFEGTVKDNIEYGPMLKGEKNVDVEYY---------LSIV--GLNKEYATRDVKNLSGGEAQRVSIARTLAN 148 (241)
T ss_pred EEEecCchhchhhHHHHHhcchhhcCcHHHHHHHH---------HHHc--CCCHHHhhCCcccCCHHHHHHHHHHHHHhc
Confidence 99999999999999999987532111 1222222 3333 343 23456677899999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHhHHHHHHHHHHHhC--CCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChhhHhcCCCchhH
Q 000984 540 DPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVEDPEGAYS 616 (1198)
Q Consensus 540 ~~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~ 616 (1198)
+|+++||||||++||+.+.+.+.+.|+++.+ ++|+|++||+++.+.. ||+|++|++|++++.|+++++...+...+.
T Consensus 149 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~~~~~ 228 (241)
T PRK14250 149 NPEVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWITHNMEQAKRIGDYTAFLNKGILVEYAKTYDFFTNPQNEVT 228 (241)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHHhCCEEEEEeCCEEEEeCCHHHHhcCCCcHHH
Confidence 9999999999999999999999999988753 7899999999999875 999999999999999999998765433343
|
|
| >cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-40 Score=364.24 Aligned_cols=222 Identities=28% Similarity=0.509 Sum_probs=185.4
Q ss_pred EEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHH-hcce
Q 000984 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWI-RKKI 462 (1198)
Q Consensus 384 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~-r~~i 462 (1198)
++++|++++|++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.+.... |.++
T Consensus 1 l~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i 77 (236)
T cd03219 1 LEVRGLTKRFGG---LVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLGI 77 (236)
T ss_pred CeeeeeEEEECC---EEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEECCCCCHHHHHhcCE
Confidence 468999999963 469999999999999999999999999999999999999999999999999988776554 5679
Q ss_pred EEEcCCCCCCcc-cHHHHHhcCCCCCCHHHH-------HHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHH
Q 000984 463 GLVSQEPVLFTG-SIKDNIAYGKDDATTEEI-------RVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIA 534 (1198)
Q Consensus 463 ~~v~Q~~~l~~~-ti~~Ni~~~~~~~~~~~~-------~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lA 534 (1198)
+|+||+|.+|.+ |++||+.++........+ ........+.+.++.+ |++...+.....||||||||++||
T Consensus 78 ~~v~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~LSgG~~qrv~la 155 (236)
T cd03219 78 GRTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERV--GLADLADRPAGELSYGQQRRLEIA 155 (236)
T ss_pred EEEecccccccCCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHc--CccchhhCChhhCCHHHHHHHHHH
Confidence 999999999875 999999875422110000 0000111223445555 666667778889999999999999
Q ss_pred HhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh-CCCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChhhHhcC
Q 000984 535 RAILKDPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVED 610 (1198)
Q Consensus 535 Ral~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 610 (1198)
||++.+|+++||||||++||+.+.+.+.+.++++. +++|+|++||+++.+.. ||+|++|++|++++.|+++++..+
T Consensus 156 ~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 233 (236)
T cd03219 156 RALATDPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMDVVMSLADRVTVLDQGRVIAEGTPDEVRNN 233 (236)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEeCCEEEeecCHHHhccC
Confidence 99999999999999999999999999999998875 57899999999999865 999999999999999999988653
|
MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). |
| >PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-40 Score=372.10 Aligned_cols=220 Identities=28% Similarity=0.533 Sum_probs=183.6
Q ss_pred EEEEeEEEEcCCCC--CCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCC----cCHHH
Q 000984 384 IELRDVYFSYPARP--NEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKE----FQLQW 457 (1198)
Q Consensus 384 i~~~~v~~~y~~~~--~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~----~~~~~ 457 (1198)
|+++|++|+|+... .+++|+|+||+|++||+++|+||||||||||+++|.|+++|++|+|.+||.++.. .+...
T Consensus 2 i~~~~v~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 81 (288)
T PRK13643 2 IKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKP 81 (288)
T ss_pred EEEEEEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECccccccccHHH
Confidence 78999999997431 1359999999999999999999999999999999999999999999999999863 34567
Q ss_pred HhcceEEEcCCC--CCCcccHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHHhCCCCcc-chhcCCCCCCChHHHHHHh
Q 000984 458 IRKKIGLVSQEP--VLFTGSIKDNIAYGKDD--ATTEEIRVATELANAAKFIDKLPQGID-TLVGEHGTQLSGGQKQRIA 532 (1198)
Q Consensus 458 ~r~~i~~v~Q~~--~l~~~ti~~Ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~-t~v~~~g~~lSgGqkqri~ 532 (1198)
+|++++||+|+| .+|..|+.||+.|+... .+.++.... +.+.++.+ |+. ........+||||||||++
T Consensus 82 ~~~~ig~v~q~~~~~l~~~tv~~~l~~~~~~~~~~~~~~~~~-----~~~~l~~~--~L~~~~~~~~~~~LSgGqkqrva 154 (288)
T PRK13643 82 VRKKVGVVFQFPESQLFEETVLKDVAFGPQNFGIPKEKAEKI-----AAEKLEMV--GLADEFWEKSPFELSGGQMRRVA 154 (288)
T ss_pred HHhhEEEEecCcchhcccchHHHHHHhHHHHcCCCHHHHHHH-----HHHHHHHc--CCChhhccCCcccCCHHHHHHHH
Confidence 889999999998 78999999999986432 222222211 11223333 443 2345677899999999999
Q ss_pred HHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh-CCCeEEEEecCcchhh-ccCEEEEEeCCEEEEecChhhHhcC
Q 000984 533 IARAILKDPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKGTHSKLVED 610 (1198)
Q Consensus 533 lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~~ 610 (1198)
|||||+.+|+++||||||++||+.+.+.+.+.++++. +++|+|++||+++.+. .||+|++|++|++++.|+++++..+
T Consensus 155 iA~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~vtHd~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~ 234 (288)
T PRK13643 155 IAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLMDDVADYADYVYLLEKGHIISCGTPSDVFQE 234 (288)
T ss_pred HHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHHcC
Confidence 9999999999999999999999999999999998765 4789999999999885 5999999999999999999998654
|
|
| >TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-40 Score=380.55 Aligned_cols=221 Identities=30% Similarity=0.489 Sum_probs=188.5
Q ss_pred cEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcce
Q 000984 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKI 462 (1198)
Q Consensus 383 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i 462 (1198)
.|+++|++++|++ ..+|+|+||++++||+++|+||||||||||+++|.|+.+|++|+|.+||.++.+.++. ++.+
T Consensus 4 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~--~r~i 78 (353)
T TIGR03265 4 YLSIDNIRKRFGA---FTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQ--KRDY 78 (353)
T ss_pred EEEEEEEEEEeCC---eEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHH--HCCE
Confidence 4899999999963 4589999999999999999999999999999999999999999999999999877654 5789
Q ss_pred EEEcCCCCCCc-ccHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhhcc
Q 000984 463 GLVSQEPVLFT-GSIKDNIAYGKDD--ATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILK 539 (1198)
Q Consensus 463 ~~v~Q~~~l~~-~ti~~Ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal~~ 539 (1198)
+||+|++.+|. .||+||+.|+... .+.++... .+.+.++.+ |++........+||||||||++|||||++
T Consensus 79 g~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~-----~~~~~l~~l--~L~~~~~~~~~~LSgGq~QRvaLARaL~~ 151 (353)
T TIGR03265 79 GIVFQSYALFPNLTVADNIAYGLKNRGMGRAEVAE-----RVAELLDLV--GLPGSERKYPGQLSGGQQQRVALARALAT 151 (353)
T ss_pred EEEeCCcccCCCCcHHHHHHHHHHhcCCCHHHHHH-----HHHHHHHHc--CCCchhhCChhhCCHHHHHHHHHHHHHhc
Confidence 99999999995 7999999987432 12222111 122334444 56666677788999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHhHHHHHHHHHHHhC--CCeEEEEecCcchhh-ccCEEEEEeCCEEEEecChhhHhcCCCchh
Q 000984 540 DPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKGTHSKLVEDPEGAY 615 (1198)
Q Consensus 540 ~~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~ 615 (1198)
+|+++|||||||+||+.+.+.+.+.++++.+ +.|+|+|||+++.+. .||+|++|++|++++.|+++++.+++...|
T Consensus 152 ~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~ea~~l~d~i~vl~~G~i~~~g~~~~~~~~p~~~~ 230 (353)
T TIGR03265 152 SPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQEEALSMADRIVVMNHGVIEQVGTPQEIYRHPATPF 230 (353)
T ss_pred CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCCCCHH
Confidence 9999999999999999999999999988754 689999999999875 599999999999999999999988755444
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely. |
| >COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-36 Score=356.35 Aligned_cols=414 Identities=17% Similarity=0.177 Sum_probs=294.8
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---------------HHHHHHHHHHHHHHHHHHHHHHHH
Q 000984 163 VVGRMSGDTVLIQDAMGEKVGKFLQLMATFLGGFLIAFIKG---------------WLLTLVMLSSIPLLAMSGGVMAIM 227 (1198)
Q Consensus 163 i~~r~s~D~~~i~~~~~~~~~~~~~~~~~~i~~~i~~~~~~---------------~~l~l~~~~~~~~~~~~~~~~~~~ 227 (1198)
.=.|++.|+..+.+........++..+.+++...++..-.+ ..+..++++.+++-.++..++++.
T Consensus 150 pDQRi~eDi~~~t~~t~~l~~g~l~s~islisF~~iLw~lsg~~~~~~~g~~~~I~g~mv~~~i~Ya~~~s~~~~~iGr~ 229 (604)
T COG4178 150 PDQRIQEDIRNFTETTLDLSFGLLQSVISLISFTGILWSLSGGLAFTIGGFSFGIPGYMVWAVIIYAISASLLTHLIGRP 229 (604)
T ss_pred hHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHccCcceEeecccccccchHHHHHHHHHHHHHHHHHHHHccc
Confidence 34799999999888776666666666655554433333111 111222222333333344455555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000984 228 ISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYKSGVQEGLAAGIGLGMVMLIVFCSYALSVW 307 (1198)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (1198)
..+..-...+..+.....+...-++...|-.|+.|+.+.++..+..........+...+..-..........++.++...
T Consensus 230 Li~LN~~~~~~EA~fR~~Lvrv~enaE~IAly~GE~~Er~~l~~~f~~v~~n~~~l~~~~~~l~~~~~gy~~~s~v~P~l 309 (604)
T COG4178 230 LIRLNFERQKLEADFRYSLVRVRENAEAIALYRGEKVERRRLDDRFDAVLGNWRRLVRAQIRLTWFQLGYGWLSVVLPIL 309 (604)
T ss_pred cccccHHHHHHHHHHHHHHHHHHhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhHHHHHHHHH
Confidence 55555555566666667777788889999999999988777665544443322221111111111111112222233333
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC-----CCCccCCCCcc--cCCC
Q 000984 308 YGGKLILEEGYNGGQVVNVMVAVLTGSMSLGEASPCLSAFGAGQAAAFKMFETINRKP-----EIDAYDTKGKI--LDDI 380 (1198)
Q Consensus 308 ~g~~l~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~-----~~~~~~~~~~~--~~~~ 380 (1198)
.+......|.++.|.+......+.....+++++...+..+..-.+...|+.++..... +..+.+..... ....
T Consensus 310 i~ap~~f~g~i~~G~lmqa~~aF~~v~sslswfi~~~~~ia~~rA~~~Rl~~f~~ai~~~~~~~~~~~~~~~~~~~~~~~ 389 (604)
T COG4178 310 IAAPRYFSGQITFGGLMQAVGAFGQVHSSLSWFIDNYDAIADWRATLLRLAEFRQALEAAQMDTEKPARTGRRIDFDDNA 389 (604)
T ss_pred hccHhhhcCcChHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhccCcccccCcccccccccccc
Confidence 3444556788888888777666666666777877778888888888888877653221 11111100000 0111
Q ss_pred cccEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhc
Q 000984 381 RGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRK 460 (1198)
Q Consensus 381 ~g~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~ 460 (1198)
+..|+++|++..-|+. ...++++||.+++||.+.|.|+||||||||+++|.|+.|--+|+|.... -.
T Consensus 390 ~~~i~~~nl~l~~p~~--~~ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g~G~I~~P~-----------~~ 456 (604)
T COG4178 390 DHGITLENLSLRTPDG--QTLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWGSGRISMPA-----------DS 456 (604)
T ss_pred cceeEEeeeeEECCCC--CeeeccceeeeCCCCEEEEECCCCCCHHHHHHHHhccCccCCCceecCC-----------CC
Confidence 4679999999998753 4789999999999999999999999999999999999999999997762 13
Q ss_pred ceEEEcCCCCCCcccHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhhc
Q 000984 461 KIGLVSQEPVLFTGSIKDNIAYGKDD--ATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAIL 538 (1198)
Q Consensus 461 ~i~~v~Q~~~l~~~ti~~Ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal~ 538 (1198)
.+-|+||.|.+-.||+||-|+++.+. .+++++.+++.+|+|.+.++++.+-. +-..-||+|||||+++||.++
T Consensus 457 ~~lflpQ~PY~p~GtLre~l~YP~~~~~~~d~~l~~vL~~vgL~~L~~rl~~~~-----~W~~vLS~GEqQRlafARilL 531 (604)
T COG4178 457 ALLFLPQRPYLPQGTLREALCYPNAAPDFSDAELVAVLHKVGLGDLAERLDEED-----RWDRVLSGGEQQRLAFARLLL 531 (604)
T ss_pred ceEEecCCCCCCCccHHHHHhCCCCCCCCChHHHHHHHHHcCcHHHHHHHhccC-----cHhhhcChhHHHHHHHHHHHH
Confidence 69999999999999999999998765 78999999999999999998874322 234579999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhCCCeEEEEecCcchhhccCEEEEEe
Q 000984 539 KDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIH 594 (1198)
Q Consensus 539 ~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~~d~i~~l~ 594 (1198)
++|++++|||+|||||++++..+.+.+++.+.+.|+|-|.||.......++.+-++
T Consensus 532 ~kP~~v~LDEATsALDe~~e~~l~q~l~~~lp~~tvISV~Hr~tl~~~h~~~l~l~ 587 (604)
T COG4178 532 HKPKWVFLDEATSALDEETEDRLYQLLKEELPDATVISVGHRPTLWNFHSRQLELL 587 (604)
T ss_pred cCCCEEEEecchhccChHHHHHHHHHHHhhCCCCEEEEeccchhhHHHHhhheeec
Confidence 99999999999999999999999999999999999999999998888777766554
|
|
| >TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-40 Score=362.43 Aligned_cols=218 Identities=32% Similarity=0.516 Sum_probs=183.3
Q ss_pred EEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCC-----CCeEEECCeecCCc--CHH
Q 000984 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQ-----AGEVLIDGINLKEF--QLQ 456 (1198)
Q Consensus 384 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~-----~G~i~i~g~~~~~~--~~~ 456 (1198)
++++|++++|+. .++++|+||+|++||+++|+|+||||||||+++|.|+++|+ +|+|.++|.++... +..
T Consensus 2 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~~ 78 (247)
T TIGR00972 2 IEIENLNLFYGE---KEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVV 78 (247)
T ss_pred EEEEEEEEEECC---eeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccchH
Confidence 789999999963 35999999999999999999999999999999999999998 99999999998753 455
Q ss_pred HHhcceEEEcCCCCCCcccHHHHHhcCCCC---CCHH----HHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHH
Q 000984 457 WIRKKIGLVSQEPVLFTGSIKDNIAYGKDD---ATTE----EIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQ 529 (1198)
Q Consensus 457 ~~r~~i~~v~Q~~~l~~~ti~~Ni~~~~~~---~~~~----~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkq 529 (1198)
..|++++|+||++.+|..|++||+.++... .+.+ ++..+++..++.+++ .........+|||||||
T Consensus 79 ~~~~~i~~v~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LSgG~~q 151 (247)
T TIGR00972 79 ELRRRVGMVFQKPNPFPMSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEV-------KDRLHDSALGLSGGQQQ 151 (247)
T ss_pred HHHhheEEEecCcccCCCCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcch-------hhHhhCCcccCCHHHHH
Confidence 678899999999999999999999875321 1122 222233333222111 14456677899999999
Q ss_pred HHhHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhCCCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChhhHh
Q 000984 530 RIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLV 608 (1198)
Q Consensus 530 ri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~ 608 (1198)
|++||||++.+|+++||||||++||+.+...+.+.|+++.+++|+|++||+++.+.. ||+|++|++|++++.|+++++.
T Consensus 152 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 231 (247)
T TIGR00972 152 RLCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKKKYTIVIVTHNMQQAARISDRTAFFYDGELVEYGPTEQIF 231 (247)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCeEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999999999999999999988767899999999998865 9999999999999999999987
Q ss_pred cCC
Q 000984 609 EDP 611 (1198)
Q Consensus 609 ~~~ 611 (1198)
.++
T Consensus 232 ~~~ 234 (247)
T TIGR00972 232 TNP 234 (247)
T ss_pred hCC
Confidence 653
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters. |
| >PRK14273 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-40 Score=364.27 Aligned_cols=221 Identities=31% Similarity=0.471 Sum_probs=184.8
Q ss_pred cEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCC-----CCCeEEECCeecCC--cCH
Q 000984 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDP-----QAGEVLIDGINLKE--FQL 455 (1198)
Q Consensus 383 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~-----~~G~i~i~g~~~~~--~~~ 455 (1198)
.|+++|++++|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|.++|.++.. .+.
T Consensus 7 ~l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 83 (254)
T PRK14273 7 IIETENLNLFYTD---FKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFDI 83 (254)
T ss_pred eEEEeeeEEEeCC---ceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecccccccH
Confidence 5899999999963 3599999999999999999999999999999999999987 48999999998853 344
Q ss_pred HHHhcceEEEcCCCCCCcccHHHHHhcCCCC---CC----HHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHH
Q 000984 456 QWIRKKIGLVSQEPVLFTGSIKDNIAYGKDD---AT----TEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQK 528 (1198)
Q Consensus 456 ~~~r~~i~~v~Q~~~l~~~ti~~Ni~~~~~~---~~----~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqk 528 (1198)
..+|++++|++|+|.+|..|++|||.++... .. ++++.++++.+++.+.+ .........+||||||
T Consensus 84 ~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l-------~~~~~~~~~~LSgG~~ 156 (254)
T PRK14273 84 LELRRKIGMVFQTPNPFLMSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEV-------KDKLNTNALSLSGGQQ 156 (254)
T ss_pred HHHhhceEEEeeccccccCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhh-------HHHHhCCcccCCHHHH
Confidence 5678899999999999999999999875321 11 12233344443332211 2233456778999999
Q ss_pred HHHhHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhCCCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChhhH
Q 000984 529 QRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKL 607 (1198)
Q Consensus 529 qri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l 607 (1198)
||++||||++++|++|||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+.. ||+|++|++|++++.|+++++
T Consensus 157 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 236 (254)
T PRK14273 157 QRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLKESYTIIIVTHNMQQAGRISDRTAFFLNGCIEEESSTDEL 236 (254)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999988777899999999998865 999999999999999999999
Q ss_pred hcCCCc
Q 000984 608 VEDPEG 613 (1198)
Q Consensus 608 ~~~~~~ 613 (1198)
.+++..
T Consensus 237 ~~~~~~ 242 (254)
T PRK14273 237 FFNPKN 242 (254)
T ss_pred HhCCCC
Confidence 765433
|
|
| >PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-40 Score=367.65 Aligned_cols=212 Identities=31% Similarity=0.560 Sum_probs=182.3
Q ss_pred cEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcce
Q 000984 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKI 462 (1198)
Q Consensus 383 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i 462 (1198)
.|+++|++++|+. ..++|+|+||+|++||+++|+|+||||||||+++|.|+++|++|+|.++|.++.+.+...+++++
T Consensus 4 ~l~~~~l~~~~~~--~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i 81 (274)
T PRK13647 4 IIEVEDLHFRYKD--GTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVRSKV 81 (274)
T ss_pred eEEEEEEEEEeCC--CCeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHhhE
Confidence 4899999999963 24699999999999999999999999999999999999999999999999999888888888999
Q ss_pred EEEcCCC--CCCcccHHHHHhcCCCC--CCH----HHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHH
Q 000984 463 GLVSQEP--VLFTGSIKDNIAYGKDD--ATT----EEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIA 534 (1198)
Q Consensus 463 ~~v~Q~~--~l~~~ti~~Ni~~~~~~--~~~----~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lA 534 (1198)
+|++|+| .++..|+++|+.|+... .+. +++..+++.+++.+ ........||||||||++||
T Consensus 82 ~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~-----------~~~~~~~~LSgG~~qrv~la 150 (274)
T PRK13647 82 GLVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRVEEALKAVRMWD-----------FRDKPPYHLSYGQKKRVAIA 150 (274)
T ss_pred EEEecChhhhhccCcHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHH-----------HhcCChhhCCHHHHHHHHHH
Confidence 9999998 67889999999976321 122 23344444444433 33444568999999999999
Q ss_pred HhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh-CCCeEEEEecCcchhh-ccCEEEEEeCCEEEEecChhhH
Q 000984 535 RAILKDPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKGTHSKL 607 (1198)
Q Consensus 535 Ral~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l 607 (1198)
|||+.+|++|||||||++||+.+.+.+.+.++++. +++|+|++||+++.+. .||+|++|++|++++.|+++++
T Consensus 151 raL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tili~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 225 (274)
T PRK13647 151 GVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDVDLAAEWADQVIVLKEGRVLAEGDKSLL 225 (274)
T ss_pred HHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHh
Confidence 99999999999999999999999999999998875 4789999999999985 5999999999999999998764
|
|
| >PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-40 Score=370.47 Aligned_cols=220 Identities=31% Similarity=0.555 Sum_probs=186.2
Q ss_pred EEEEeEEEEcCCCC--CCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCc----CHHH
Q 000984 384 IELRDVYFSYPARP--NEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEF----QLQW 457 (1198)
Q Consensus 384 i~~~~v~~~y~~~~--~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~----~~~~ 457 (1198)
|+++|++++|+... .+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++... +...
T Consensus 3 l~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (286)
T PRK13646 3 IRFDNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIRP 82 (286)
T ss_pred EEEEEEEEEECCCCccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHH
Confidence 78999999996422 24699999999999999999999999999999999999999999999999998653 3457
Q ss_pred HhcceEEEcCCC--CCCcccHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHHhCCCCccc-hhcCCCCCCChHHHHHHh
Q 000984 458 IRKKIGLVSQEP--VLFTGSIKDNIAYGKDD--ATTEEIRVATELANAAKFIDKLPQGIDT-LVGEHGTQLSGGQKQRIA 532 (1198)
Q Consensus 458 ~r~~i~~v~Q~~--~l~~~ti~~Ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~t-~v~~~g~~lSgGqkqri~ 532 (1198)
+|++|+||+|+| .+|..|++|||.++... .+.++..+. +.+.++.+ |+++ .......+||||||||++
T Consensus 83 ~~~~ig~v~q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~-----~~~~l~~~--gL~~~~~~~~~~~LSgGq~qrv~ 155 (286)
T PRK13646 83 VRKRIGMVFQFPESQLFEDTVEREIIFGPKNFKMNLDEVKNY-----AHRLLMDL--GFSRDVMSQSPFQMSGGQMRKIA 155 (286)
T ss_pred HHhheEEEecChHhccchhhHHHHHHhhHHHcCCCHHHHHHH-----HHHHHHHc--CCChhhhhCCcccCCHHHHHHHH
Confidence 888999999998 68888999999986321 233332221 12334444 6764 456778899999999999
Q ss_pred HHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh--CCCeEEEEecCcchhh-ccCEEEEEeCCEEEEecChhhHhc
Q 000984 533 IARAILKDPRILLLDEATSALDAESEKVVQEALDRIM--VNRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKGTHSKLVE 609 (1198)
Q Consensus 533 lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~--~~~t~i~itH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~ 609 (1198)
|||||+.+|+++||||||++||+.+...+.+.++++. .++|+|++||+++.+. .||+|++|++|++++.|+++++.+
T Consensus 156 laraL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~~ 235 (286)
T PRK13646 156 IVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMNEVARYADEVIVMKEGSIVSQTSPKELFK 235 (286)
T ss_pred HHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 9999999999999999999999999999999998874 3789999999999875 599999999999999999998875
Q ss_pred C
Q 000984 610 D 610 (1198)
Q Consensus 610 ~ 610 (1198)
.
T Consensus 236 ~ 236 (286)
T PRK13646 236 D 236 (286)
T ss_pred C
Confidence 4
|
|
| >PRK10744 pstB phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-40 Score=364.71 Aligned_cols=221 Identities=33% Similarity=0.539 Sum_probs=186.8
Q ss_pred cccEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCC-----CCCCeEEECCeecCC--c
Q 000984 381 RGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYD-----PQAGEVLIDGINLKE--F 453 (1198)
Q Consensus 381 ~g~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~-----~~~G~i~i~g~~~~~--~ 453 (1198)
.+.|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++.. .
T Consensus 11 ~~~l~~~~l~~~~~~---~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~ 87 (260)
T PRK10744 11 PSKIQVRNLNFYYGK---FHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQ 87 (260)
T ss_pred CceEEEEEEEEEeCC---eEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEcccccc
Confidence 356999999999963 369999999999999999999999999999999999986 579999999999853 4
Q ss_pred CHHHHhcceEEEcCCCCCCcccHHHHHhcCCCC---CCH----HHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChH
Q 000984 454 QLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDD---ATT----EEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGG 526 (1198)
Q Consensus 454 ~~~~~r~~i~~v~Q~~~l~~~ti~~Ni~~~~~~---~~~----~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgG 526 (1198)
+...+|++++|++|+|.+|..|++||+.++... .+. ++++++++..++.+ ++....++...+||||
T Consensus 88 ~~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~~~~~~~~~~~~LS~G 160 (260)
T PRK10744 88 DIALLRAKVGMVFQKPTPFPMSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWN-------EVKDKLHQSGYSLSGG 160 (260)
T ss_pred chHHHhcceEEEecCCccCcCcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCCh-------hhHHHHhcCCCCCCHH
Confidence 556788899999999999999999999875321 222 22333343333221 2234566778899999
Q ss_pred HHHHHhHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhCCCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChh
Q 000984 527 QKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHS 605 (1198)
Q Consensus 527 qkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~ 605 (1198)
||||++||||++++|+++||||||++||+.+.+.+.+.++++.+++|+|++||+++.+.. ||++++|++|++++.|+++
T Consensus 161 q~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~ 240 (260)
T PRK10744 161 QQQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELKQDYTVVIVTHNMQQAARCSDYTAFMYLGELIEFGNTD 240 (260)
T ss_pred HHHHHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 999999999999999999999999999999999999999988777899999999998864 9999999999999999999
Q ss_pred hHhcCC
Q 000984 606 KLVEDP 611 (1198)
Q Consensus 606 ~l~~~~ 611 (1198)
++...+
T Consensus 241 ~~~~~~ 246 (260)
T PRK10744 241 TIFTKP 246 (260)
T ss_pred HHHhCC
Confidence 987653
|
|
| >PRK14242 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-40 Score=365.20 Aligned_cols=218 Identities=32% Similarity=0.518 Sum_probs=184.4
Q ss_pred cEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCC-----CCCCeEEECCeecCC--cCH
Q 000984 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYD-----PQAGEVLIDGINLKE--FQL 455 (1198)
Q Consensus 383 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~-----~~~G~i~i~g~~~~~--~~~ 455 (1198)
.|+++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++.. .+.
T Consensus 6 ~l~~~~l~~~~~~---~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 82 (253)
T PRK14242 6 KMEARGLSFFYGD---FQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVDV 82 (253)
T ss_pred EEEEeeeEEEECC---eeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccccCH
Confidence 4899999999963 359999999999999999999999999999999999874 589999999999865 345
Q ss_pred HHHhcceEEEcCCCCCCcccHHHHHhcCCCC--C-C----HHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHH
Q 000984 456 QWIRKKIGLVSQEPVLFTGSIKDNIAYGKDD--A-T----TEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQK 528 (1198)
Q Consensus 456 ~~~r~~i~~v~Q~~~l~~~ti~~Ni~~~~~~--~-~----~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqk 528 (1198)
..+|++++|++|++.+|..|++||+.++... . . .+++..+++.+++.+.+ ....+....+||||||
T Consensus 83 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LSgGq~ 155 (253)
T PRK14242 83 VELRRRVGMVFQKPNPFPKSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEV-------KDRLHESALGLSGGQQ 155 (253)
T ss_pred HHHhhcEEEEecCCCCCcCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhh-------hHHhhCCcccCCHHHH
Confidence 5678899999999999989999999875311 1 1 12334444444432221 2345667789999999
Q ss_pred HHHhHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhCCCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChhhH
Q 000984 529 QRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKL 607 (1198)
Q Consensus 529 qri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l 607 (1198)
||++||||++.+|++|||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+.. ||+|++|++|++++.|+++++
T Consensus 156 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 235 (253)
T PRK14242 156 QRLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELKARYTIIIVTHNMQQAARVSDVTAFFYMGKLIEVGPTEQI 235 (253)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCeEEEEEecHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999988777899999999998865 999999999999999999998
Q ss_pred hcC
Q 000984 608 VED 610 (1198)
Q Consensus 608 ~~~ 610 (1198)
.+.
T Consensus 236 ~~~ 238 (253)
T PRK14242 236 FTR 238 (253)
T ss_pred HcC
Confidence 765
|
|
| >PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-40 Score=369.83 Aligned_cols=220 Identities=31% Similarity=0.552 Sum_probs=183.2
Q ss_pred EEEEeEEEEcCCCC--CCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCC----cCHHH
Q 000984 384 IELRDVYFSYPARP--NEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKE----FQLQW 457 (1198)
Q Consensus 384 i~~~~v~~~y~~~~--~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~----~~~~~ 457 (1198)
++++|++++|+... ..++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||+++.. .+...
T Consensus 3 l~~~~l~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (290)
T PRK13634 3 ITFQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLKP 82 (290)
T ss_pred EEEEEEEEEECCCCcccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHH
Confidence 78999999996432 1469999999999999999999999999999999999999999999999999863 34566
Q ss_pred HhcceEEEcCCC--CCCcccHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHHhCCCCcc-chhcCCCCCCChHHHHHHh
Q 000984 458 IRKKIGLVSQEP--VLFTGSIKDNIAYGKDD--ATTEEIRVATELANAAKFIDKLPQGID-TLVGEHGTQLSGGQKQRIA 532 (1198)
Q Consensus 458 ~r~~i~~v~Q~~--~l~~~ti~~Ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~-t~v~~~g~~lSgGqkqri~ 532 (1198)
.|++++||+|+| .+|+.|++|||.|+... .+.++..+. +.+.++.+ |++ .........||||||||++
T Consensus 83 ~~~~ig~v~q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~-----~~~~l~~~--gL~~~~~~~~~~~LSgGq~qrv~ 155 (290)
T PRK13634 83 LRKKVGIVFQFPEHQLFEETVEKDICFGPMNFGVSEEDAKQK-----AREMIELV--GLPEELLARSPFELSGGQMRRVA 155 (290)
T ss_pred HHhhEEEEeeCchhhhhhhhHHHHHHHHHHHcCCCHHHHHHH-----HHHHHHHC--CCChhhhhCCcccCCHHHHHHHH
Confidence 788999999998 68889999999976321 223322211 11223333 443 2335667789999999999
Q ss_pred HHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhC--CCeEEEEecCcchhh-ccCEEEEEeCCEEEEecChhhHhc
Q 000984 533 IARAILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKGTHSKLVE 609 (1198)
Q Consensus 533 lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~ 609 (1198)
|||||+.+|++|||||||++||+.+.+.+.+.++++.+ +.|+|++||+++.+. .||||++|++|++++.|+++++.+
T Consensus 156 lAraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~~~~~~~~drv~~l~~G~i~~~g~~~~~~~ 235 (290)
T PRK13634 156 IAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSMEDAARYADQIVVMHKGTVFLQGTPREIFA 235 (290)
T ss_pred HHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHhc
Confidence 99999999999999999999999999999999988753 789999999999886 499999999999999999999875
Q ss_pred C
Q 000984 610 D 610 (1198)
Q Consensus 610 ~ 610 (1198)
.
T Consensus 236 ~ 236 (290)
T PRK13634 236 D 236 (290)
T ss_pred C
Confidence 4
|
|
| >PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-40 Score=366.86 Aligned_cols=216 Identities=31% Similarity=0.553 Sum_probs=185.9
Q ss_pred cEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcce
Q 000984 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKI 462 (1198)
Q Consensus 383 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i 462 (1198)
.++++|++++|+.. .+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||+++...+...+++.|
T Consensus 5 ~l~~~~l~~~~~~~-~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~~~~~~~~~~i 83 (279)
T PRK13635 5 IIRVEHISFRYPDA-ATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDVRRQV 83 (279)
T ss_pred eEEEEEEEEEeCCC-CccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHhhhe
Confidence 48999999999642 34699999999999999999999999999999999999999999999999999888877788899
Q ss_pred EEEcCCC--CCCcccHHHHHhcCCCC--CCH----HHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHH
Q 000984 463 GLVSQEP--VLFTGSIKDNIAYGKDD--ATT----EEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIA 534 (1198)
Q Consensus 463 ~~v~Q~~--~l~~~ti~~Ni~~~~~~--~~~----~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lA 534 (1198)
+|++|+| .+++.|++|||.++... .+. +++.++++..+ ++..+......||||||||++||
T Consensus 84 ~~~~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~g-----------L~~~~~~~~~~LS~G~~qrv~la 152 (279)
T PRK13635 84 GMVFQNPDNQFVGATVQDDVAFGLENIGVPREEMVERVDQALRQVG-----------MEDFLNREPHRLSGGQKQRVAIA 152 (279)
T ss_pred EEEEeCHHHhcccccHHHHHhhhHhhCCCCHHHHHHHHHHHHHHcC-----------ChhhhhCCcccCCHHHHHHHHHH
Confidence 9999998 46678999999875321 122 22333444444 33344455568999999999999
Q ss_pred HhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhC--CCeEEEEecCcchhhccCEEEEEeCCEEEEecChhhHhcC
Q 000984 535 RAILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVED 610 (1198)
Q Consensus 535 Ral~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~ 610 (1198)
||++.+|++|||||||++||+.+.+.+.+.|+++.+ ++|+|++||+++.+..||+|++|++|++++.|+++++.+.
T Consensus 153 ral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 230 (279)
T PRK13635 153 GVLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLDEAAQADRVIVMNKGEILEEGTPEEIFKS 230 (279)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHhcC
Confidence 999999999999999999999999999999998764 6899999999999888999999999999999999988654
|
|
| >cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-40 Score=357.32 Aligned_cols=217 Identities=26% Similarity=0.471 Sum_probs=180.0
Q ss_pred EEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHH-hcce
Q 000984 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWI-RKKI 462 (1198)
Q Consensus 384 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~-r~~i 462 (1198)
|+++|++++|+. .++|+|+||++++||+++|+||||||||||+++|.|+++|++|+|.++|.++...+.... |+++
T Consensus 1 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i 77 (222)
T cd03224 1 LEVENLNAGYGK---SQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERARAGI 77 (222)
T ss_pred CEEeeEEeecCC---eeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCCCCHHHHHhcCe
Confidence 478999999963 369999999999999999999999999999999999999999999999999988776554 6789
Q ss_pred EEEcCCCCCCcc-cHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhhccCC
Q 000984 463 GLVSQEPVLFTG-SIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDP 541 (1198)
Q Consensus 463 ~~v~Q~~~l~~~-ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal~~~~ 541 (1198)
+|++|++.+|.+ |++||+.++.......+.... +.+.++.++ +++.........||||||||++||||++++|
T Consensus 78 ~~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~-----~~~~l~~~~-~l~~~~~~~~~~LS~G~~qrv~laral~~~p 151 (222)
T cd03224 78 GYVPEGRRIFPELTVEENLLLGAYARRRAKRKAR-----LERVYELFP-RLKERRKQLAGTLSGGEQQMLAIARALMSRP 151 (222)
T ss_pred EEeccccccCCCCcHHHHHHHHhhhcCchhHHHH-----HHHHHHHHH-hhhhhhhCchhhCCHHHHHHHHHHHHHhcCC
Confidence 999999998875 999999876432211111111 111222221 2334455667789999999999999999999
Q ss_pred CEEEEeCCCCCCCHHhHHHHHHHHHHHh-CCCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChhhHhc
Q 000984 542 RILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVE 609 (1198)
Q Consensus 542 ~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~ 609 (1198)
+++||||||++||+.+.+.+.+.++++. +++|+|++||+++.+.. ||+|++|++|++++.|+++++..
T Consensus 152 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 221 (222)
T cd03224 152 KLLLLDEPSEGLAPKIVEEIFEAIRELRDEGVTILLVEQNARFALEIADRAYVLERGRVVLEGTAAELLA 221 (222)
T ss_pred CEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhccEEEEeeCCeEEEeCCHHHHhc
Confidence 9999999999999999999999998875 47899999999998765 99999999999999999887653
|
The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. |
| >cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-40 Score=360.04 Aligned_cols=216 Identities=34% Similarity=0.541 Sum_probs=181.2
Q ss_pred cEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcce
Q 000984 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKI 462 (1198)
Q Consensus 383 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i 462 (1198)
.++++|++++|+. +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. .++++
T Consensus 2 ~l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~--~~~~i 76 (239)
T cd03296 2 SIEVRNVSKRFGD---FVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPV--QERNV 76 (239)
T ss_pred EEEEEeEEEEECC---EEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCc--cccce
Confidence 3789999999963 469999999999999999999999999999999999999999999999999876543 25689
Q ss_pred EEEcCCCCCCc-ccHHHHHhcCCCCC------CHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHH
Q 000984 463 GLVSQEPVLFT-GSIKDNIAYGKDDA------TTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIAR 535 (1198)
Q Consensus 463 ~~v~Q~~~l~~-~ti~~Ni~~~~~~~------~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lAR 535 (1198)
+|++|+|.+|. .|++||+.++.... +..+..+ .+.+.++.+ |++........+||||||||++|||
T Consensus 77 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrl~la~ 149 (239)
T cd03296 77 GFVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRA-----KVHELLKLV--QLDWLADRYPAQLSGGQRQRVALAR 149 (239)
T ss_pred EEEecCCcccCCCCHHHHHhhhhhhccccccCCHHHHHH-----HHHHHHHHc--CChhhhhcChhhCCHHHHHHHHHHH
Confidence 99999999885 69999998763211 1111111 112333433 4555556667789999999999999
Q ss_pred hhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhC--CCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChhhHhcC
Q 000984 536 AILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVED 610 (1198)
Q Consensus 536 al~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 610 (1198)
|++.+|++|||||||++||+++.+.+.+.|+++.+ ++|+|++||+++.+.. ||+|++|++|++++.|+++++.+.
T Consensus 150 al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 227 (239)
T cd03296 150 ALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQEEALEVADRVVVMNKGRIEQVGTPDEVYDH 227 (239)
T ss_pred HHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCHHHHhcC
Confidence 99999999999999999999999999999988753 6899999999998765 999999999999999999998754
|
Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14235 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-40 Score=364.26 Aligned_cols=220 Identities=33% Similarity=0.513 Sum_probs=185.7
Q ss_pred cccEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCC-----CCCeEEECCeecCC--c
Q 000984 381 RGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDP-----QAGEVLIDGINLKE--F 453 (1198)
Q Consensus 381 ~g~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~-----~~G~i~i~g~~~~~--~ 453 (1198)
.+.|+++|++++|++ +++|+|+||+|++||+++|+|+||||||||+++|.|+++| ++|+|.++|.++.. .
T Consensus 17 ~~~l~~~nl~~~~~~---~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~~ 93 (267)
T PRK14235 17 EIKMRARDVSVFYGE---KQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRL 93 (267)
T ss_pred CceEEEEeEEEEECC---EEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECccccc
Confidence 457999999999963 4699999999999999999999999999999999999975 89999999999864 3
Q ss_pred CHHHHhcceEEEcCCCCCCcccHHHHHhcCCCC--C--C----HHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCCh
Q 000984 454 QLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDD--A--T----TEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSG 525 (1198)
Q Consensus 454 ~~~~~r~~i~~v~Q~~~l~~~ti~~Ni~~~~~~--~--~----~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSg 525 (1198)
+...+|++++|++|+|.+|..|++||+.++... . . .+++.++++..++.+.+ ....+..+.+|||
T Consensus 94 ~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LSg 166 (267)
T PRK14235 94 DVVELRARVGMVFQKPNPFPKSIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEV-------KDRLHEPGTGLSG 166 (267)
T ss_pred chHHHhhceEEEecCCCCCCCcHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhh-------hHHhhCCcccCCH
Confidence 456778899999999999988999999875310 0 1 12233344444332211 2345667789999
Q ss_pred HHHHHHhHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhCCCeEEEEecCcchhhc-cCEEEEEeCCEEEEecCh
Q 000984 526 GQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTH 604 (1198)
Q Consensus 526 Gqkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~ 604 (1198)
|||||++||||++.+|++|||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+.. ||++++|++|++++.|++
T Consensus 167 Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~~~tiiivtH~~~~~~~~~d~v~~l~~G~i~~~g~~ 246 (267)
T PRK14235 167 GQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQNYTIVIVTHSMQQAARVSQRTAFFHLGNLVEVGDT 246 (267)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhcCCeEEEEEcCHHHHHhhCCEEEEEECCEEEEeCCH
Confidence 9999999999999999999999999999999999999999988777899999999999865 899999999999999999
Q ss_pred hhHhcC
Q 000984 605 SKLVED 610 (1198)
Q Consensus 605 ~~l~~~ 610 (1198)
+++..+
T Consensus 247 ~~~~~~ 252 (267)
T PRK14235 247 EKMFTN 252 (267)
T ss_pred HHHHhC
Confidence 998754
|
|
| >cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-40 Score=360.20 Aligned_cols=218 Identities=34% Similarity=0.573 Sum_probs=184.1
Q ss_pred EEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcceE
Q 000984 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIG 463 (1198)
Q Consensus 384 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~ 463 (1198)
++++|++++|+.. +++|+|+||+|++||+++|+||||||||||+++|.|+++|++|+|.++|.++...+...+++.++
T Consensus 1 l~~~~l~~~~~~~--~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 78 (242)
T cd03295 1 IEFENVTKRYGGG--KKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELRRKIG 78 (242)
T ss_pred CEEEEEEEEeCCc--ceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeEcCcCChHHhhcceE
Confidence 4689999999641 46999999999999999999999999999999999999999999999999998888778888999
Q ss_pred EEcCCCCCCc-ccHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHHhCCCCccc--hhcCCCCCCChHHHHHHhHHHhhc
Q 000984 464 LVSQEPVLFT-GSIKDNIAYGKDD--ATTEEIRVATELANAAKFIDKLPQGIDT--LVGEHGTQLSGGQKQRIAIARAIL 538 (1198)
Q Consensus 464 ~v~Q~~~l~~-~ti~~Ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~t--~v~~~g~~lSgGqkqri~lARal~ 538 (1198)
|++|+|.+|. .|++||+.++... .+.++.. ..+.+.++.+ |+.. ...+...+||||||||++||||++
T Consensus 79 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~-----~~~~~~l~~l--~l~~~~~~~~~~~~LS~G~~qrv~laral~ 151 (242)
T cd03295 79 YVIQQIGLFPHMTVEENIALVPKLLKWPKEKIR-----ERADELLALV--GLDPAEFADRYPHELSGGQQQRVGVARALA 151 (242)
T ss_pred EEccCccccCCCcHHHHHHHHHHHcCCCHHHHH-----HHHHHHHHHc--CCCcHHHHhcChhhCCHHHHHHHHHHHHHh
Confidence 9999999885 7999999865211 1111111 1122334444 4443 456677899999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhC--CCeEEEEecCcchhh-ccCEEEEEeCCEEEEecChhhHhcC
Q 000984 539 KDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKGTHSKLVED 610 (1198)
Q Consensus 539 ~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~~ 610 (1198)
++|+++||||||++||+.+.+.+.+.++++.+ ++|+|++||+++.+. .||+|++|++|++++.|+++++.++
T Consensus 152 ~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 226 (242)
T cd03295 152 ADPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQVGTPDEILRS 226 (242)
T ss_pred cCCCEEEecCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHHcC
Confidence 99999999999999999999999999988753 789999999999875 4999999999999999999988654
|
ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK10851 sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-40 Score=374.84 Aligned_cols=221 Identities=32% Similarity=0.536 Sum_probs=184.7
Q ss_pred cEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcce
Q 000984 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKI 462 (1198)
Q Consensus 383 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i 462 (1198)
.|+++|++++|++ ..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++.+.+. .++++
T Consensus 2 ~L~i~~l~~~~~~---~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~--~~r~i 76 (353)
T PRK10851 2 SIEIANIKKSFGR---TQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHA--RDRKV 76 (353)
T ss_pred EEEEEEEEEEeCC---eEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCH--HHCCE
Confidence 3789999999963 459999999999999999999999999999999999999999999999999987654 35689
Q ss_pred EEEcCCCCCCc-ccHHHHHhcCCCC------CCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHH
Q 000984 463 GLVSQEPVLFT-GSIKDNIAYGKDD------ATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIAR 535 (1198)
Q Consensus 463 ~~v~Q~~~l~~-~ti~~Ni~~~~~~------~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lAR 535 (1198)
+||+|++.+|. .|++||+.|+... .+.++..+ .+.+.++.+ |++.........||||||||++|||
T Consensus 77 ~~v~Q~~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~L~~~~~~~~~~LSgGq~QRvalAr 149 (353)
T PRK10851 77 GFVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKA-----KVTQLLEMV--QLAHLADRYPAQLSGGQKQRVALAR 149 (353)
T ss_pred EEEecCcccCCCCcHHHHHHhhhhhcccccCCCHHHHHH-----HHHHHHHHc--CCchhhhCChhhCCHHHHHHHHHHH
Confidence 99999999996 6999999987431 12222111 111223333 4444455667789999999999999
Q ss_pred hhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhC--CCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChhhHhcCCC
Q 000984 536 AILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVEDPE 612 (1198)
Q Consensus 536 al~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~~ 612 (1198)
||+++|++|||||||++||+.+.+.+.+.|+++.+ ++|+|+|||+++.+.. ||+|++|++|++++.|+++++..++.
T Consensus 150 AL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~~ea~~~~Dri~vl~~G~i~~~g~~~~i~~~p~ 229 (353)
T PRK10851 150 ALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQEEAMEVADRVVVMSQGNIEQAGTPDQVWREPA 229 (353)
T ss_pred HHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCcc
Confidence 99999999999999999999999999999988764 6899999999998765 99999999999999999999987654
Q ss_pred chh
Q 000984 613 GAY 615 (1198)
Q Consensus 613 ~~~ 615 (1198)
..|
T Consensus 230 ~~~ 232 (353)
T PRK10851 230 TRF 232 (353)
T ss_pred chH
Confidence 333
|
|
| >TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-40 Score=376.44 Aligned_cols=223 Identities=30% Similarity=0.494 Sum_probs=187.1
Q ss_pred cccEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCC--CeEEECCeecCCcCHHHH
Q 000984 381 RGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQA--GEVLIDGINLKEFQLQWI 458 (1198)
Q Consensus 381 ~g~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~--G~i~i~g~~~~~~~~~~~ 458 (1198)
.+.|+++|++++|++ ..+|+|+||+|++||+++|+||||||||||+++|.|+++|++ |+|.++|.++.+.+..
T Consensus 3 ~~~l~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~~~~~~-- 77 (362)
T TIGR03258 3 CGGIRIDHLRVAYGA---NTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPPH-- 77 (362)
T ss_pred ceEEEEEEEEEEECC---eEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECCCCCHH--
Confidence 367999999999963 359999999999999999999999999999999999999999 9999999999876653
Q ss_pred hcceEEEcCCCCCCc-ccHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHH
Q 000984 459 RKKIGLVSQEPVLFT-GSIKDNIAYGKDD--ATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIAR 535 (1198)
Q Consensus 459 r~~i~~v~Q~~~l~~-~ti~~Ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lAR 535 (1198)
+++|+||+|++.+|. .||+|||.|+... .+.++..+. +.+.++.+ |++........+||||||||++|||
T Consensus 78 ~r~ig~vfQ~~~l~p~~tv~enl~~~l~~~~~~~~~~~~~-----v~~~l~~~--gL~~~~~~~~~~LSgGq~QRvaLAR 150 (362)
T TIGR03258 78 KRGLALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAER-----VADALKLV--GLGDAAAHLPAQLSGGMQQRIAIAR 150 (362)
T ss_pred HCCEEEEECCcccCCCCcHHHHHHHHHHHcCCCHHHHHHH-----HHHHHHhc--CCCchhhCChhhCCHHHHHHHHHHH
Confidence 568999999999995 5999999986421 122222211 12223333 5555566677799999999999999
Q ss_pred hhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhC---CCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChhhHhcCC
Q 000984 536 AILKDPRILLLDEATSALDAESEKVVQEALDRIMV---NRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVEDP 611 (1198)
Q Consensus 536 al~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~---~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~ 611 (1198)
||+++|++||||||||+||+.+...+.+.|+++.+ +.|+|+|||+++.+.. ||+|++|++|++++.|+++++..++
T Consensus 151 AL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~ea~~l~dri~vl~~G~i~~~g~~~~~~~~p 230 (362)
T TIGR03258 151 AIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQDDALTLADKAGIMKDGRLAAHGEPQALYDAP 230 (362)
T ss_pred HHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCc
Confidence 99999999999999999999999999999987654 6899999999998754 9999999999999999999998775
Q ss_pred Cchh
Q 000984 612 EGAY 615 (1198)
Q Consensus 612 ~~~~ 615 (1198)
...|
T Consensus 231 ~~~~ 234 (362)
T TIGR03258 231 ADGF 234 (362)
T ss_pred CcHH
Confidence 4333
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. |
| >cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-40 Score=360.53 Aligned_cols=215 Identities=33% Similarity=0.572 Sum_probs=181.7
Q ss_pred EEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcC---HHHHhc
Q 000984 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQ---LQWIRK 460 (1198)
Q Consensus 384 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~---~~~~r~ 460 (1198)
++++|++++|+. ++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+ ...+++
T Consensus 1 l~~~~l~~~~~~--~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 78 (241)
T cd03256 1 IEVENLSKTYPN--GKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQLRR 78 (241)
T ss_pred CEEeeEEEecCC--ccEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEeccccCHhHHHHHHh
Confidence 468999999964 146999999999999999999999999999999999999999999999999998776 456788
Q ss_pred ceEEEcCCCCCCc-ccHHHHHhcCCCCC-----------CHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHH
Q 000984 461 KIGLVSQEPVLFT-GSIKDNIAYGKDDA-----------TTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQK 528 (1198)
Q Consensus 461 ~i~~v~Q~~~l~~-~ti~~Ni~~~~~~~-----------~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqk 528 (1198)
.++|+||++.+|. .|++||+.++.... .++.. ..+.+.++.+ |+.......+.+||||||
T Consensus 79 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~l~~~--~l~~~~~~~~~~LS~G~~ 150 (241)
T cd03256 79 QIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEK------QRALAALERV--GLLDKAYQRADQLSGGQQ 150 (241)
T ss_pred ccEEEcccCcccccCcHHHHHHhhhcccchhhhhhcccCcHHHH------HHHHHHHHHc--CChhhhCCCcccCCHHHH
Confidence 9999999998886 79999998753210 11111 1112233333 555556677889999999
Q ss_pred HHHhHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh--CCCeEEEEecCcchhh-ccCEEEEEeCCEEEEecChh
Q 000984 529 QRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIM--VNRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKGTHS 605 (1198)
Q Consensus 529 qri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~--~~~t~i~itH~~~~~~-~~d~i~~l~~G~i~~~g~~~ 605 (1198)
||++||||++++|++|||||||++||+.+.+.+.+.++++. .++|+|++||+++.+. .||+|++|++|++++.|+++
T Consensus 151 qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~ 230 (241)
T cd03256 151 QRVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVDLAREYADRIVGLKDGRIVFDGPPA 230 (241)
T ss_pred HHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecCHH
Confidence 99999999999999999999999999999999999998875 3789999999999987 59999999999999999998
Q ss_pred hHh
Q 000984 606 KLV 608 (1198)
Q Consensus 606 ~l~ 608 (1198)
++.
T Consensus 231 ~~~ 233 (241)
T cd03256 231 ELT 233 (241)
T ss_pred Hhh
Confidence 863
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-40 Score=356.76 Aligned_cols=203 Identities=30% Similarity=0.512 Sum_probs=170.4
Q ss_pred EEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHH---HHhc
Q 000984 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQ---WIRK 460 (1198)
Q Consensus 384 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~---~~r~ 460 (1198)
|+++|++++|+.. .+++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.+.. .+|+
T Consensus 2 l~~~~l~~~~~~~-~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 80 (216)
T TIGR00960 2 IRFEQVSKAYPGG-HQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRGREIPFLRR 80 (216)
T ss_pred eEEEEEEEEecCC-CeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhcChhHHHHHHH
Confidence 7899999999642 24699999999999999999999999999999999999999999999999998766543 4678
Q ss_pred ceEEEcCCCCCCc-ccHHHHHhcCCCC--CC----HHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhH
Q 000984 461 KIGLVSQEPVLFT-GSIKDNIAYGKDD--AT----TEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAI 533 (1198)
Q Consensus 461 ~i~~v~Q~~~l~~-~ti~~Ni~~~~~~--~~----~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~l 533 (1198)
+++|++|+|.+|. .|++||+.++... .. ++++.++++..+ +.........+||||||||++|
T Consensus 81 ~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~-----------l~~~~~~~~~~LSgG~~qrv~l 149 (216)
T TIGR00960 81 HIGMVFQDHRLLSDRTVYDNVAFPLRIIGVPPRDANERVSAALEKVG-----------LEGKAHALPMQLSGGEQQRVAI 149 (216)
T ss_pred hceEEecCccccccccHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcC-----------ChhhhhCChhhCCHHHHHHHHH
Confidence 9999999999886 6999999875211 11 223344444443 3333444556899999999999
Q ss_pred HHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh-CCCeEEEEecCcchhhc-cCEEEEEeCCEE
Q 000984 534 ARAILKDPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRN-ADMIAVIHRGKI 598 (1198)
Q Consensus 534 ARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i 598 (1198)
|||++++|++|||||||++||+.+.+.+.+.++++. +++|+|+|||+++.+.. ||+|++|++|++
T Consensus 150 aral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i 216 (216)
T TIGR00960 150 ARAIVHKPPLLLADEPTGNLDPELSRDIMRLFEEFNRRGTTVLVATHDINLVETYRHRTLTLSRGRL 216 (216)
T ss_pred HHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 999999999999999999999999999999998874 37899999999999875 999999999975
|
|
| >cd03291 ABCC_CFTR1 The CFTR subfamily domain 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-39 Score=358.06 Aligned_cols=212 Identities=29% Similarity=0.492 Sum_probs=190.1
Q ss_pred CcccEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHh
Q 000984 380 IRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIR 459 (1198)
Q Consensus 380 ~~g~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r 459 (1198)
..+.|+++|+++.+ +++|+|+||+|++||+++|+|+||||||||+++|+|+++|.+|+|.++|
T Consensus 36 ~~~~l~i~nls~~~-----~~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~p~~G~I~i~g------------ 98 (282)
T cd03291 36 DDNNLFFSNLCLVG-----APVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSG------------ 98 (282)
T ss_pred CCCeEEEEEEEEec-----ccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECC------------
Confidence 34569999999952 3599999999999999999999999999999999999999999999998
Q ss_pred cceEEEcCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhhcc
Q 000984 460 KKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILK 539 (1198)
Q Consensus 460 ~~i~~v~Q~~~l~~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal~~ 539 (1198)
+++|++|++++|..|++||+.++.. ....++...++.+++.+.+..+|.+.++.+++.+..||||||||++||||+++
T Consensus 99 -~i~yv~q~~~l~~~tv~enl~~~~~-~~~~~~~~~l~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~qrv~lAraL~~ 176 (282)
T cd03291 99 -RISFSSQFSWIMPGTIKENIIFGVS-YDEYRYKSVVKACQLEEDITKFPEKDNTVLGEGGITLSGGQRARISLARAVYK 176 (282)
T ss_pred -EEEEEeCcccccccCHHHHhhcccc-cCHHHHHHHHHHhCCHHHHHhccccccceecCCCCcCCHHHHHHHHHHHHHhc
Confidence 5999999999999999999997643 23445566677778888899999999999999999999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHhHHHHHHH-HHHHhCCCeEEEEecCcchhhccCEEEEEeCCEEEEecChhhHhcC
Q 000984 540 DPRILLLDEATSALDAESEKVVQEA-LDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVED 610 (1198)
Q Consensus 540 ~~~illlDe~ts~lD~~~~~~i~~~-i~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~ 610 (1198)
+|++|||||||++||+.+...+.+. ++.+.+++|+|++||+++.+..||++++|++|++++.|+++++.+.
T Consensus 177 ~p~iLiLDEPt~gLD~~~~~~l~~~ll~~~~~~~tIiiisH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 248 (282)
T cd03291 177 DADLYLLDSPFGYLDVFTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQSL 248 (282)
T ss_pred CCCEEEEECCCccCCHHHHHHHHHHHHHHhhCCCEEEEEeCChHHHHhCCEEEEEECCEEEEECCHHHHHhc
Confidence 9999999999999999998888765 4555567999999999999988999999999999999999998754
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-39 Score=349.96 Aligned_cols=200 Identities=34% Similarity=0.553 Sum_probs=180.1
Q ss_pred EEEEeEEEEcCCCCC--CccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcc
Q 000984 384 IELRDVYFSYPARPN--EQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKK 461 (1198)
Q Consensus 384 i~~~~v~~~y~~~~~--~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~ 461 (1198)
|+++||+++|+...+ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++| +
T Consensus 1 l~~~~l~~~~~~~~~~~~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~~g-------------~ 67 (204)
T cd03250 1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPG-------------S 67 (204)
T ss_pred CEEeEEEEecCCCCccccceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCCCCeEEEcC-------------E
Confidence 478999999964311 3699999999999999999999999999999999999999999999998 6
Q ss_pred eEEEcCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhhccCC
Q 000984 462 IGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDP 541 (1198)
Q Consensus 462 i~~v~Q~~~l~~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal~~~~ 541 (1198)
|+|++|+|.+|++|++||+.++.. ..+++.+++++.+++.+++..+|.|+++.+++.+.+||||||||++||||++.+|
T Consensus 68 i~~~~q~~~l~~~t~~enl~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~laral~~~p 146 (204)
T cd03250 68 IAYVSQEPWIQNGTIRENILFGKP-FDEERYEKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDA 146 (204)
T ss_pred EEEEecCchhccCcHHHHhccCCC-cCHHHHHHHHHHcCcHHHHHhccCcccceecCCCCcCCHHHHHHHHHHHHHhcCC
Confidence 999999999999999999998643 4456677888888889999999999999999999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHhHHHHHH-HHHHHh-CCCeEEEEecCcchhhccCEEEEEeCCE
Q 000984 542 RILLLDEATSALDAESEKVVQE-ALDRIM-VNRTTVIVAHRLSTVRNADMIAVIHRGK 597 (1198)
Q Consensus 542 ~illlDe~ts~lD~~~~~~i~~-~i~~~~-~~~t~i~itH~~~~~~~~d~i~~l~~G~ 597 (1198)
+++||||||++||+++.+.+.+ .++... +++|+|++||+++.+..||++++|++|+
T Consensus 147 ~llllDEP~~~LD~~~~~~l~~~ll~~~~~~~~tvi~~sh~~~~~~~~d~i~~l~~G~ 204 (204)
T cd03250 147 DIYLLDDPLSAVDAHVGRHIFENCILGLLLNNKTRILVTHQLQLLPHADQIVVLDNGR 204 (204)
T ss_pred CEEEEeCccccCCHHHHHHHHHHHHHHhccCCCEEEEEeCCHHHHhhCCEEEEEeCCC
Confidence 9999999999999999887766 455553 4689999999999998899999999985
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-40 Score=376.31 Aligned_cols=217 Identities=32% Similarity=0.551 Sum_probs=185.4
Q ss_pred cEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcce
Q 000984 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKI 462 (1198)
Q Consensus 383 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i 462 (1198)
.++++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+.+|++|+|.+||.++.+.+.. ++++
T Consensus 14 ~L~l~~l~~~~~~---~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~--~r~i 88 (375)
T PRK09452 14 LVELRGISKSFDG---KEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPAE--NRHV 88 (375)
T ss_pred eEEEEEEEEEECC---eEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHH--HCCE
Confidence 5899999999963 4589999999999999999999999999999999999999999999999999877654 4689
Q ss_pred EEEcCCCCCCc-ccHHHHHhcCCCC--CCH----HHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHH
Q 000984 463 GLVSQEPVLFT-GSIKDNIAYGKDD--ATT----EEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIAR 535 (1198)
Q Consensus 463 ~~v~Q~~~l~~-~ti~~Ni~~~~~~--~~~----~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lAR 535 (1198)
+||+|++.+|. .||+|||.|+... .+. +++.++++..+ ++........+||||||||++|||
T Consensus 89 g~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~~~~~l~~~~-----------l~~~~~~~p~~LSgGq~QRVaLAR 157 (375)
T PRK09452 89 NTVFQSYALFPHMTVFENVAFGLRMQKTPAAEITPRVMEALRMVQ-----------LEEFAQRKPHQLSGGQQQRVAIAR 157 (375)
T ss_pred EEEecCcccCCCCCHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcC-----------CchhhhCChhhCCHHHHHHHHHHH
Confidence 99999999995 5999999987431 122 23333444444 444445555789999999999999
Q ss_pred hhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhC--CCeEEEEecCcchhh-ccCEEEEEeCCEEEEecChhhHhcCCC
Q 000984 536 AILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKGTHSKLVEDPE 612 (1198)
Q Consensus 536 al~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~~~~ 612 (1198)
||+++|++||||||||+||+.+...+.+.|+++.+ +.|+|+|||+++.+. .||+|++|++|+|++.|+++++..++.
T Consensus 158 aL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~i~~~p~ 237 (375)
T PRK09452 158 AVVNKPKVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRDGRIEQDGTPREIYEEPK 237 (375)
T ss_pred HHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCcc
Confidence 99999999999999999999999999999988764 789999999999865 599999999999999999999988755
Q ss_pred chh
Q 000984 613 GAY 615 (1198)
Q Consensus 613 ~~~ 615 (1198)
..|
T Consensus 238 ~~~ 240 (375)
T PRK09452 238 NLF 240 (375)
T ss_pred cHH
Confidence 433
|
|
| >cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-40 Score=358.29 Aligned_cols=220 Identities=33% Similarity=0.543 Sum_probs=183.4
Q ss_pred EEEEeEEEEcCCCC-CCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHH---HHh
Q 000984 384 IELRDVYFSYPARP-NEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQ---WIR 459 (1198)
Q Consensus 384 i~~~~v~~~y~~~~-~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~---~~r 459 (1198)
|+++|++++|+.+. ..++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+.. ..+
T Consensus 2 i~~~~l~~~~~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (233)
T cd03258 2 IELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELRKAR 81 (233)
T ss_pred eEEecceEEccCCCCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHH
Confidence 78999999996431 12699999999999999999999999999999999999999999999999998876543 347
Q ss_pred cceEEEcCCCCCCc-ccHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHh
Q 000984 460 KKIGLVSQEPVLFT-GSIKDNIAYGKDD--ATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARA 536 (1198)
Q Consensus 460 ~~i~~v~Q~~~l~~-~ti~~Ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARa 536 (1198)
++++|+||+|.+|. .|++||+.++... .+..+.. ..+.+.++.+ |++........+||||||||++||||
T Consensus 82 ~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~la~a 154 (233)
T cd03258 82 RRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIE-----ERVLELLELV--GLEDKADAYPAQLSGGQKQRVGIARA 154 (233)
T ss_pred hheEEEccCcccCCCCcHHHHHHHHHHHcCCCHHHHH-----HHHHHHHHHC--CChhhhhcChhhCCHHHHHHHHHHHH
Confidence 88999999999996 6999999874321 1111111 1122334444 55555666678899999999999999
Q ss_pred hccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhC--CCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChhhHhcC
Q 000984 537 ILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVED 610 (1198)
Q Consensus 537 l~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 610 (1198)
++++|+++||||||++||+.+.+.+.+.++++.+ ++|+|++||+++.+.. ||++++|++|++++.|+++++.++
T Consensus 155 l~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 231 (233)
T cd03258 155 LANNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEMEVVKRICDRVAVMEKGEVVEEGTVEEVFAN 231 (233)
T ss_pred HhcCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHhcC
Confidence 9999999999999999999999999999988753 7899999999999865 999999999999999999887653
|
Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13651 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-40 Score=368.59 Aligned_cols=220 Identities=29% Similarity=0.493 Sum_probs=182.2
Q ss_pred EEEEeEEEEcCCCC--CCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCC---------
Q 000984 384 IELRDVYFSYPARP--NEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKE--------- 452 (1198)
Q Consensus 384 i~~~~v~~~y~~~~--~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~--------- 452 (1198)
|+++|++++|+... ..++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++..
T Consensus 3 i~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 82 (305)
T PRK13651 3 IKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTKEKEK 82 (305)
T ss_pred EEEEEEEEEECCCCCccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEeceecccccccccccc
Confidence 78999999997432 1369999999999999999999999999999999999999999999999877632
Q ss_pred ---------------cCHHHHhcceEEEcCCC--CCCcccHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHHhCCCCcc
Q 000984 453 ---------------FQLQWIRKKIGLVSQEP--VLFTGSIKDNIAYGKDD--ATTEEIRVATELANAAKFIDKLPQGID 513 (1198)
Q Consensus 453 ---------------~~~~~~r~~i~~v~Q~~--~l~~~ti~~Ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~ 513 (1198)
.+...+|++|+||+|+| .+|..||+|||.|+... .+.++..+. +.+.++.+ |++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~-----~~~~l~~~--gL~ 155 (305)
T PRK13651 83 VLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSMGVSKEEAKKR-----AAKYIELV--GLD 155 (305)
T ss_pred cccccccccccccccchHHHHHhceEEEeeCcccccccccHHHHHHhhHHHcCCCHHHHHHH-----HHHHHHHc--CCC
Confidence 13456788999999987 68889999999986422 223222221 11223333 553
Q ss_pred -chhcCCCCCCChHHHHHHhHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh-CCCeEEEEecCcchhh-ccCEE
Q 000984 514 -TLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVR-NADMI 590 (1198)
Q Consensus 514 -t~v~~~g~~lSgGqkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~-~~d~i 590 (1198)
........+||||||||++|||||+.+|++|||||||++||+.+.+.+.+.|+++. +++|+|+|||+++.+. .||||
T Consensus 156 ~~~~~~~~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~~adrv 235 (305)
T PRK13651 156 ESYLQRSPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLDNVLEWTKRT 235 (305)
T ss_pred hhhhhCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeeCHHHHHHhCCEE
Confidence 34567778999999999999999999999999999999999999999999998875 4789999999999875 59999
Q ss_pred EEEeCCEEEEecChhhHhcC
Q 000984 591 AVIHRGKIVEKGTHSKLVED 610 (1198)
Q Consensus 591 ~~l~~G~i~~~g~~~~l~~~ 610 (1198)
++|++|++++.|+++++.++
T Consensus 236 ~vl~~G~i~~~g~~~~~~~~ 255 (305)
T PRK13651 236 IFFKDGKIIKDGDTYDILSD 255 (305)
T ss_pred EEEECCEEEEECCHHHHhcC
Confidence 99999999999999998764
|
|
| >cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-40 Score=366.03 Aligned_cols=217 Identities=33% Similarity=0.533 Sum_probs=179.4
Q ss_pred EEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHH----hc
Q 000984 385 ELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWI----RK 460 (1198)
Q Consensus 385 ~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~----r~ 460 (1198)
.++|+++.|+. .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.+...+ ++
T Consensus 26 ~~~~~~~~~~~---~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~~ 102 (269)
T cd03294 26 SKEEILKKTGQ---TVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRK 102 (269)
T ss_pred hhhhhhhhcCC---ceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccChhhhhhhhcC
Confidence 45677777753 458999999999999999999999999999999999999999999999999987765443 36
Q ss_pred ceEEEcCCCCCC-cccHHHHHhcCCCC--CCH----HHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhH
Q 000984 461 KIGLVSQEPVLF-TGSIKDNIAYGKDD--ATT----EEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAI 533 (1198)
Q Consensus 461 ~i~~v~Q~~~l~-~~ti~~Ni~~~~~~--~~~----~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~l 533 (1198)
+++|++|++.+| ..|++||+.++... ... +++.+.++.. |++..+.....+||||||||++|
T Consensus 103 ~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~-----------~l~~~~~~~~~~LS~Gq~qrv~l 171 (269)
T cd03294 103 KISMVFQSFALLPHRTVLENVAFGLEVQGVPRAEREERAAEALELV-----------GLEGWEHKYPDELSGGMQQRVGL 171 (269)
T ss_pred cEEEEecCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHc-----------CCHhHhhCCcccCCHHHHHHHHH
Confidence 799999999988 57999999874211 111 2233333333 34444455556899999999999
Q ss_pred HHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhC--CCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChhhHhcC
Q 000984 534 ARAILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVED 610 (1198)
Q Consensus 534 ARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 610 (1198)
|||++++|++|||||||++||+.+.+.+.+.|+++.+ ++|+|++||+++.+.. ||+|++|++|++++.|+++++.+.
T Consensus 172 Aral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 251 (269)
T cd03294 172 ARALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLDEALRLGDRIAIMKDGRLVQVGTPEEILTN 251 (269)
T ss_pred HHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHHHhC
Confidence 9999999999999999999999999999999988753 6899999999998754 999999999999999999999765
Q ss_pred CCchh
Q 000984 611 PEGAY 615 (1198)
Q Consensus 611 ~~~~~ 615 (1198)
+...|
T Consensus 252 ~~~~~ 256 (269)
T cd03294 252 PANDY 256 (269)
T ss_pred cCcHH
Confidence 44333
|
This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-40 Score=355.90 Aligned_cols=215 Identities=23% Similarity=0.471 Sum_probs=178.3
Q ss_pred EEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcceE
Q 000984 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIG 463 (1198)
Q Consensus 384 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~ 463 (1198)
|+++|++++|+.. .+++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.... ..++++++
T Consensus 1 l~~~~l~~~~~~~-~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~-~~~~~~i~ 78 (220)
T cd03263 1 LQIRNLTKTYKKG-TKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTDR-KAARQSLG 78 (220)
T ss_pred CEEEeeEEEeCCC-CceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccch-HHHhhhEE
Confidence 4789999999642 246999999999999999999999999999999999999999999999999987543 56678899
Q ss_pred EEcCCCCCC-cccHHHHHhcCCC--CCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhhccC
Q 000984 464 LVSQEPVLF-TGSIKDNIAYGKD--DATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKD 540 (1198)
Q Consensus 464 ~v~Q~~~l~-~~ti~~Ni~~~~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal~~~ 540 (1198)
|++|+|.++ ..|+++|+.++.. ....++..+ .+.+.++.+ |+.........+||||||||++||||++++
T Consensus 79 ~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~la~al~~~ 151 (220)
T cd03263 79 YCPQFDALFDELTVREHLRFYARLKGLPKSEIKE-----EVELLLRVL--GLTDKANKRARTLSGGMKRKLSLAIALIGG 151 (220)
T ss_pred EecCcCCccccCCHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHHc--CCHHHHhChhhhCCHHHHHHHHHHHHHhcC
Confidence 999999988 6799999986421 112211111 111223222 333334455578999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHhHHHHHHHHHHHhCCCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChhhH
Q 000984 541 PRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKL 607 (1198)
Q Consensus 541 ~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l 607 (1198)
|++|||||||++||+.+.+.+.+.++++.+++|+|++||+++.+.. ||++++|++|++++.|+++++
T Consensus 152 p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~ 219 (220)
T cd03263 152 PSVLLLDEPTSGLDPASRRAIWDLILEVRKGRSIILTTHSMDEAEALCDRIAIMSDGKLRCIGSPQEL 219 (220)
T ss_pred CCEEEECCCCCCCCHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhcCEEEEEECCEEEecCCHHHc
Confidence 9999999999999999999999999988777999999999999865 999999999999999998775
|
Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. |
| >TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-39 Score=359.58 Aligned_cols=214 Identities=31% Similarity=0.546 Sum_probs=180.6
Q ss_pred EEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCH---HHHhc
Q 000984 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQL---QWIRK 460 (1198)
Q Consensus 384 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~---~~~r~ 460 (1198)
|+++|++++|+. ++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. ..+|+
T Consensus 2 l~~~~l~~~~~~--~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 79 (243)
T TIGR02315 2 LEVENLSKVYPN--GKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKLRR 79 (243)
T ss_pred eEEEeeeeecCC--CcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhhhCCHHHHHHHHh
Confidence 689999999962 2469999999999999999999999999999999999999999999999999877653 34678
Q ss_pred ceEEEcCCCCCCc-ccHHHHHhcCCCCC-----------CHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHH
Q 000984 461 KIGLVSQEPVLFT-GSIKDNIAYGKDDA-----------TTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQK 528 (1198)
Q Consensus 461 ~i~~v~Q~~~l~~-~ti~~Ni~~~~~~~-----------~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqk 528 (1198)
+++|++|++.+|. .|++||+.++.... ..+. ...+.+.++.+ |++........+||||||
T Consensus 80 ~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~l~~~--~l~~~~~~~~~~LSgG~~ 151 (243)
T TIGR02315 80 RIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEED------KERALSALERV--GLADKAYQRADQLSGGQQ 151 (243)
T ss_pred heEEEcCCCcccccccHHHHHhhcccccccchhhhhccccHHH------HHHHHHHHHHc--CcHhhhcCCcccCCHHHH
Confidence 8999999998885 69999998753211 1111 11122333443 555556677789999999
Q ss_pred HHHhHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhC--CCeEEEEecCcchhh-ccCEEEEEeCCEEEEecChh
Q 000984 529 QRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKGTHS 605 (1198)
Q Consensus 529 qri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~-~~d~i~~l~~G~i~~~g~~~ 605 (1198)
||++||||++.+|++|||||||++||+.+.+.+.+.|+++.+ ++|+|++||+++.+. .||+|++|++|++++.|+++
T Consensus 152 qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~ 231 (243)
T TIGR02315 152 QRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVDLAKKYADRIVGLKAGEIVFDGAPS 231 (243)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEecCCHH
Confidence 999999999999999999999999999999999999988753 689999999999985 49999999999999999998
Q ss_pred hH
Q 000984 606 KL 607 (1198)
Q Consensus 606 ~l 607 (1198)
++
T Consensus 232 ~~ 233 (243)
T TIGR02315 232 EL 233 (243)
T ss_pred Hh
Confidence 86
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates. |
| >PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-39 Score=376.59 Aligned_cols=214 Identities=25% Similarity=0.463 Sum_probs=186.8
Q ss_pred cEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcce
Q 000984 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKI 462 (1198)
Q Consensus 383 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i 462 (1198)
.++++|++++|++ +++|+|+||++++||+++|+||||||||||+++|.|+++|++|+|.++|.++.+.+...+++++
T Consensus 3 ~L~~~nls~~y~~---~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~~~~~~~~~~~i 79 (402)
T PRK09536 3 MIDVSDLSVEFGD---TTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASRRV 79 (402)
T ss_pred eEEEeeEEEEECC---EEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEcCcCCHHHHhcce
Confidence 4889999999963 4699999999999999999999999999999999999999999999999999999988999999
Q ss_pred EEEcCCCCC-CcccHHHHHhcCCCCC-------C---HHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHH
Q 000984 463 GLVSQEPVL-FTGSIKDNIAYGKDDA-------T---TEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRI 531 (1198)
Q Consensus 463 ~~v~Q~~~l-~~~ti~~Ni~~~~~~~-------~---~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri 531 (1198)
+||+|++.+ ++.|++||+.++...+ . .++++++++..++ .........+||||||||+
T Consensus 80 g~v~q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl-----------~~~~~~~~~~LSgGerQRv 148 (402)
T PRK09536 80 ASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGV-----------AQFADRPVTSLSGGERQRV 148 (402)
T ss_pred EEEccCCCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCC-----------chhhcCChhhCCHHHHHHH
Confidence 999999987 5789999999864211 1 2234444444444 3333455678999999999
Q ss_pred hHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh-CCCeEEEEecCcchhh-ccCEEEEEeCCEEEEecChhhHhc
Q 000984 532 AIARAILKDPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKGTHSKLVE 609 (1198)
Q Consensus 532 ~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~ 609 (1198)
+|||||+++|++|||||||++||+.+...+.+.|+++. +++|+|++||+++.+. .|||+++|++|++++.|++++++.
T Consensus 149 ~IArAL~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~~g~TIIivsHdl~~~~~~adrii~l~~G~iv~~G~~~ev~~ 228 (402)
T PRK09536 149 LLARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVDDGKTAVAAIHDLDLAARYCDELVLLADGRVRAAGPPADVLT 228 (402)
T ss_pred HHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEecCHHHHhC
Confidence 99999999999999999999999999999999998875 4789999999999985 599999999999999999999876
Q ss_pred C
Q 000984 610 D 610 (1198)
Q Consensus 610 ~ 610 (1198)
.
T Consensus 229 ~ 229 (402)
T PRK09536 229 A 229 (402)
T ss_pred c
Confidence 4
|
|
| >PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-39 Score=365.85 Aligned_cols=219 Identities=26% Similarity=0.525 Sum_probs=184.6
Q ss_pred cEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecC--CcCHHHHhc
Q 000984 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLK--EFQLQWIRK 460 (1198)
Q Consensus 383 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~--~~~~~~~r~ 460 (1198)
.|+++|++++|+. ++++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++. ..+...+|+
T Consensus 5 ~l~~~~l~~~~~~--~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~ 82 (283)
T PRK13636 5 ILKVEELNYNYSD--GTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLRE 82 (283)
T ss_pred eEEEEeEEEEeCC--CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEECCCCcchHHHHHh
Confidence 4899999999963 246999999999999999999999999999999999999999999999999984 344567889
Q ss_pred ceEEEcCCC--CCCcccHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHh
Q 000984 461 KIGLVSQEP--VLFTGSIKDNIAYGKDD--ATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARA 536 (1198)
Q Consensus 461 ~i~~v~Q~~--~l~~~ti~~Ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARa 536 (1198)
+++|++|+| .++..|++||+.++... .+.++.++. +.+.++.+ |+.........+||||||||++||||
T Consensus 83 ~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~-----~~~~l~~~--gL~~~~~~~~~~LS~G~~qrl~lara 155 (283)
T PRK13636 83 SVGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKR-----VDNALKRT--GIEHLKDKPTHCLSFGQKKRVAIAGV 155 (283)
T ss_pred hEEEEecCcchhhccccHHHHHHhHHHHcCCCHHHHHHH-----HHHHHHHC--CChhhhhCCcccCCHHHHHHHHHHHH
Confidence 999999998 57889999999875321 222222111 11222332 45555567788999999999999999
Q ss_pred hccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhC--CCeEEEEecCcchhh-ccCEEEEEeCCEEEEecChhhHhcC
Q 000984 537 ILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKGTHSKLVED 610 (1198)
Q Consensus 537 l~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~~ 610 (1198)
|+.+|++|||||||++||+.+...+.+.++++.+ ++|+|++||+++.+. .||+|++|++|++++.|+++++.+.
T Consensus 156 L~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~ 232 (283)
T PRK13636 156 LVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFAE 232 (283)
T ss_pred HHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 9999999999999999999999999999988764 789999999999987 5999999999999999999998764
|
|
| >PRK14259 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-39 Score=361.48 Aligned_cols=220 Identities=35% Similarity=0.508 Sum_probs=184.9
Q ss_pred ccEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCC-----CCCCeEEECCeecCC--cC
Q 000984 382 GDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYD-----PQAGEVLIDGINLKE--FQ 454 (1198)
Q Consensus 382 g~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~-----~~~G~i~i~g~~~~~--~~ 454 (1198)
..|+++|++++|+. .++|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++.. .+
T Consensus 12 ~~l~i~nl~~~~~~---~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~~~ 88 (269)
T PRK14259 12 IIISLQNVTISYGT---FEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVD 88 (269)
T ss_pred ceEEEEeEEEEECC---EEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccCC
Confidence 35999999999963 459999999999999999999999999999999999987 589999999999863 45
Q ss_pred HHHHhcceEEEcCCCCCCcccHHHHHhcCCCC--CC---HHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHH
Q 000984 455 LQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDD--AT---TEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQ 529 (1198)
Q Consensus 455 ~~~~r~~i~~v~Q~~~l~~~ti~~Ni~~~~~~--~~---~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkq 529 (1198)
..++|++++|++|+|.+|..|++||+.++... .. ++++.++++..++. .+++........+|||||||
T Consensus 89 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~-------~~l~~~~~~~~~~LS~G~~q 161 (269)
T PRK14259 89 PVEVRRRIGMVFQQPNPFPKSIYENIAFGARINGYTGDMDELVERSLRKAAVW-------DECKDKLNESGYSLSGGQQQ 161 (269)
T ss_pred HHHHhhceEEEccCCccchhhHHHHHhhhhhhcCCcHHHHHHHHHHHHHhCCc-------chhhhhhCCCcccCCHHHHH
Confidence 66788899999999999988999999976421 11 12233333333221 23344556677889999999
Q ss_pred HHhHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhCCCeEEEEecCcchhhc-cCEEEEEeC-----------CE
Q 000984 530 RIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRN-ADMIAVIHR-----------GK 597 (1198)
Q Consensus 530 ri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~-~d~i~~l~~-----------G~ 597 (1198)
|++||||++++|++|||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+.. ||++++|++ |+
T Consensus 162 rl~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~~~~~~~~~g~~g~ 241 (269)
T PRK14259 162 RLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELKKNFTIVIVTHNMQQAVRVSDMTAFFNAEEVEGGSGGKVGY 241 (269)
T ss_pred HHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeccccccccccccce
Confidence 999999999999999999999999999999999999988777899999999998865 999999996 67
Q ss_pred EEEecChhhHhcCC
Q 000984 598 IVEKGTHSKLVEDP 611 (1198)
Q Consensus 598 i~~~g~~~~l~~~~ 611 (1198)
+++.|+++++...+
T Consensus 242 ~~~~~~~~~~~~~~ 255 (269)
T PRK14259 242 LVEFNETKKIFNSP 255 (269)
T ss_pred EEEeCCHHHHHhCc
Confidence 99999999987653
|
|
| >PRK14267 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-39 Score=361.21 Aligned_cols=218 Identities=30% Similarity=0.475 Sum_probs=182.5
Q ss_pred cEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCC-----CCCeEEECCeecC--CcCH
Q 000984 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDP-----QAGEVLIDGINLK--EFQL 455 (1198)
Q Consensus 383 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~-----~~G~i~i~g~~~~--~~~~ 455 (1198)
.|+++|++++|+. .++|+|+||++++||+++|+||||||||||+++|.|+++| ++|+|.++|.++. +.+.
T Consensus 4 ~l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~ 80 (253)
T PRK14267 4 AIETVNLRVYYGS---NHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDP 80 (253)
T ss_pred eEEEEeEEEEeCC---eeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccCh
Confidence 4899999999963 4599999999999999999999999999999999999987 4999999999987 4555
Q ss_pred HHHhcceEEEcCCCCCCcc-cHHHHHhcCCC--C--CCHH----HHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChH
Q 000984 456 QWIRKKIGLVSQEPVLFTG-SIKDNIAYGKD--D--ATTE----EIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGG 526 (1198)
Q Consensus 456 ~~~r~~i~~v~Q~~~l~~~-ti~~Ni~~~~~--~--~~~~----~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgG 526 (1198)
..+|++++|++|+|.+|.. |++||+.++.. . ...+ ++.++++..++.+ .+.........+||||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~~~~~~~~~~~~LS~G 153 (253)
T PRK14267 81 IEVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWD-------EVKDRLNDYPSNLSGG 153 (253)
T ss_pred HHHhhceeEEecCCccCCCCcHHHHHHHHHHhcCccCCHHHHHHHHHHHHHHcCCcc-------chhhhhccChhhCCHH
Confidence 6778899999999999965 99999987421 1 0122 2233333322211 1123456677899999
Q ss_pred HHHHHhHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhCCCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChh
Q 000984 527 QKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHS 605 (1198)
Q Consensus 527 qkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~ 605 (1198)
||||++||||++++|+++||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+.. ||+|++|++|++++.|+++
T Consensus 154 ~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~ 233 (253)
T PRK14267 154 QRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKKEYTIVLVTHSPAQAARVSDYVAFLYLGKLIEVGPTR 233 (253)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhhCCEEEEEECCHHHHHhhCCEEEEEECCEEEEeCCHH
Confidence 999999999999999999999999999999999999999988777999999999998765 9999999999999999999
Q ss_pred hHhcC
Q 000984 606 KLVED 610 (1198)
Q Consensus 606 ~l~~~ 610 (1198)
++.+.
T Consensus 234 ~~~~~ 238 (253)
T PRK14267 234 KVFEN 238 (253)
T ss_pred HHHhC
Confidence 98764
|
|
| >PRK14274 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-39 Score=360.12 Aligned_cols=219 Identities=31% Similarity=0.469 Sum_probs=183.3
Q ss_pred cEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCC--C---CCCeEEECCeecCC--cCH
Q 000984 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYD--P---QAGEVLIDGINLKE--FQL 455 (1198)
Q Consensus 383 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~--~---~~G~i~i~g~~~~~--~~~ 455 (1198)
.|+++|+++.|+. +++|+|+||+|++||+++|+|+||||||||+++|+|+++ | ++|+|.++|.++.. .+.
T Consensus 12 ~l~i~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~~~ 88 (259)
T PRK14274 12 VYQINGMNLWYGQ---HHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVDL 88 (259)
T ss_pred eEEEeeEEEEECC---eeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccccCH
Confidence 4899999999963 469999999999999999999999999999999999987 3 58999999999863 345
Q ss_pred HHHhcceEEEcCCCCCCcccHHHHHhcCCCCC---CHHH----HHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHH
Q 000984 456 QWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDA---TTEE----IRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQK 528 (1198)
Q Consensus 456 ~~~r~~i~~v~Q~~~l~~~ti~~Ni~~~~~~~---~~~~----~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqk 528 (1198)
..+|++++|++|+|.+|..|++||+.++.... .+++ +.++++..++.+. +.........+||||||
T Consensus 89 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-------~~~~l~~~~~~LS~Gq~ 161 (259)
T PRK14274 89 VELRKNIGMVFQKGNPFPQSIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDE-------VKDRLHTQALSLSGGQQ 161 (259)
T ss_pred HHHhhceEEEecCCcccccCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchh-------hhhhhhCCcccCCHHHH
Confidence 67788999999999999899999998753211 1222 2222323222211 12345667789999999
Q ss_pred HHHhHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhCCCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChhhH
Q 000984 529 QRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKL 607 (1198)
Q Consensus 529 qri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l 607 (1198)
||++||||++++|+++||||||++||+++...+.+.|+++.+++|+|++||+++.+.. ||+|++|++|++++.|+++++
T Consensus 162 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 241 (259)
T PRK14274 162 QRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKEKYTIVIVTHNMQQAARVSDQTAFFYMGELVECNDTNKM 241 (259)
T ss_pred HHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 9999999999999999999999999999999999999988778999999999998865 999999999999999999998
Q ss_pred hcCC
Q 000984 608 VEDP 611 (1198)
Q Consensus 608 ~~~~ 611 (1198)
.+++
T Consensus 242 ~~~~ 245 (259)
T PRK14274 242 FSNP 245 (259)
T ss_pred hhCC
Confidence 7653
|
|
| >cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-39 Score=356.23 Aligned_cols=216 Identities=25% Similarity=0.472 Sum_probs=183.0
Q ss_pred EEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHH-hcce
Q 000984 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWI-RKKI 462 (1198)
Q Consensus 384 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~-r~~i 462 (1198)
|+++|++++|++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+.... |..+
T Consensus 1 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i 77 (232)
T cd03218 1 LRAENLSKRYGK---RKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARLGI 77 (232)
T ss_pred CeEEEEEEEeCC---EEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccCCHhHHHhccE
Confidence 478999999963 469999999999999999999999999999999999999999999999999887766553 5679
Q ss_pred EEEcCCCCCCcc-cHHHHHhcCCCCC--CHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhhcc
Q 000984 463 GLVSQEPVLFTG-SIKDNIAYGKDDA--TTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILK 539 (1198)
Q Consensus 463 ~~v~Q~~~l~~~-ti~~Ni~~~~~~~--~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal~~ 539 (1198)
+|++|++.+|.+ |++||+.++.+.. ..++... .+.+.++.+ |++........+||||||||++||||++.
T Consensus 78 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrl~la~al~~ 150 (232)
T cd03218 78 GYLPQEASIFRKLTVEENILAVLEIRGLSKKEREE-----KLEELLEEF--HITHLRKSKASSLSGGERRRVEIARALAT 150 (232)
T ss_pred EEecCCccccccCcHHHHHHHHHHhcCCCHHHHHH-----HHHHHHHHc--CChhhhhCChhhCCHHHHHHHHHHHHHhc
Confidence 999999999876 9999998753211 1221111 123344444 66666677788999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHhHHHHHHHHHHHhC-CCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChhhHhc
Q 000984 540 DPRILLLDEATSALDAESEKVVQEALDRIMV-NRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVE 609 (1198)
Q Consensus 540 ~~~illlDe~ts~lD~~~~~~i~~~i~~~~~-~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~ 609 (1198)
+|++|||||||++||+.+.+.+.+.++++.+ ++|+|++||+++.+.. ||+|++|++|++++.|+++++..
T Consensus 151 ~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 222 (232)
T cd03218 151 NPKFLLLDEPFAGVDPIAVQDIQKIIKILKDRGIGVLITDHNVRETLSITDRAYIIYEGKVLAEGTPEEIAA 222 (232)
T ss_pred CCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEEeCHHHhhc
Confidence 9999999999999999999999999988754 7899999999987765 99999999999999999988754
|
The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. |
| >TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-39 Score=356.14 Aligned_cols=216 Identities=29% Similarity=0.523 Sum_probs=183.7
Q ss_pred EEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcceE
Q 000984 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIG 463 (1198)
Q Consensus 384 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~ 463 (1198)
++++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.+... +++++
T Consensus 2 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~i~~~~~~~-~~~i~ 77 (236)
T TIGR03864 2 LEVAGLSFAYGA---RRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPRAA-LARLG 77 (236)
T ss_pred EEEEeeEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccCChhh-hhhEE
Confidence 689999999963 46999999999999999999999999999999999999999999999999988766544 45899
Q ss_pred EEcCCCCCC-cccHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhhccC
Q 000984 464 LVSQEPVLF-TGSIKDNIAYGKDD--ATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKD 540 (1198)
Q Consensus 464 ~v~Q~~~l~-~~ti~~Ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal~~~ 540 (1198)
|++|++.++ ..|+++|+.++... ....+..+ .+.+.++.+ |++........+||||||||++||||++++
T Consensus 78 ~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--gl~~~~~~~~~~LS~G~~qrl~laral~~~ 150 (236)
T TIGR03864 78 VVFQQPTLDLDLSVRQNLRYHAALHGLSRAEARE-----RIAALLARL--GLAERADDKVRELNGGHRRRVEIARALLHR 150 (236)
T ss_pred EeCCCCCCcccCcHHHHHHHHHHhcCCCHHHHHH-----HHHHHHHHc--CChhhhcCChhhCCHHHHHHHHHHHHHhcC
Confidence 999999874 68999999864321 12221111 122344444 666667777889999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHhHHHHHHHHHHHh--CCCeEEEEecCcchhhccCEEEEEeCCEEEEecChhhHhcC
Q 000984 541 PRILLLDEATSALDAESEKVVQEALDRIM--VNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVED 610 (1198)
Q Consensus 541 ~~illlDe~ts~lD~~~~~~i~~~i~~~~--~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~ 610 (1198)
|+++||||||++||+.+.+.+.+.++++. +++|+|++||+++.+..||+|++|++|++++.|+++++.+.
T Consensus 151 p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 222 (236)
T TIGR03864 151 PALLLLDEPTVGLDPASRAAIVAHVRALCRDQGLSVLWATHLVDEIEADDRLVVLHRGRVLADGAAAELRGA 222 (236)
T ss_pred CCEEEEcCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecChhhHhhCCEEEEEeCCeEEEeCCHHHHHHH
Confidence 99999999999999999999999998875 37899999999999888999999999999999999888654
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification. |
| >PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-39 Score=376.24 Aligned_cols=219 Identities=29% Similarity=0.486 Sum_probs=183.3
Q ss_pred cEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcce
Q 000984 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKI 462 (1198)
Q Consensus 383 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i 462 (1198)
.|+++|++++|++ ..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.+.. ++++
T Consensus 3 ~l~i~~l~~~~~~---~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i~~~~~~--~~~i 77 (369)
T PRK11000 3 SVTLRNVTKAYGD---VVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPPA--ERGV 77 (369)
T ss_pred EEEEEEEEEEeCC---eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHh--HCCE
Confidence 4899999999963 4599999999999999999999999999999999999999999999999999876653 4689
Q ss_pred EEEcCCCCCCc-ccHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhhcc
Q 000984 463 GLVSQEPVLFT-GSIKDNIAYGKDD--ATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILK 539 (1198)
Q Consensus 463 ~~v~Q~~~l~~-~ti~~Ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal~~ 539 (1198)
+||+|++.+|. .|++||+.|+... .+.++..+ .+.+.++.+ |++........+||||||||++|||||++
T Consensus 78 ~~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~-----~~~~~l~~l--gL~~~~~~~~~~LSgGq~QRvaLAraL~~ 150 (369)
T PRK11000 78 GMVFQSYALYPHLSVAENMSFGLKLAGAKKEEINQ-----RVNQVAEVL--QLAHLLDRKPKALSGGQRQRVAIGRTLVA 150 (369)
T ss_pred EEEeCCcccCCCCCHHHHHHhHHhhcCCCHHHHHH-----HHHHHHHHc--CChhhhcCChhhCCHHHHHHHHHHHHHhc
Confidence 99999999995 5999999986421 12222111 111223333 45445556667899999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHhHHHHHHHHHHHhC--CCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChhhHhcCCCc
Q 000984 540 DPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVEDPEG 613 (1198)
Q Consensus 540 ~~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~~~ 613 (1198)
+|++||||||||+||+.+.+.+.+.|+++.+ +.|+|+|||+++.+.. ||+|++|++|++++.|+++++...+..
T Consensus 151 ~P~lLLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~~~~~~~d~i~vl~~G~i~~~g~~~~i~~~p~~ 227 (369)
T PRK11000 151 EPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYPAN 227 (369)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCccc
Confidence 9999999999999999999999999988753 7899999999998764 999999999999999999999876443
|
|
| >PRK14247 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-39 Score=357.98 Aligned_cols=219 Identities=32% Similarity=0.495 Sum_probs=184.3
Q ss_pred cEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCC-----CCCeEEECCeecCCcCHHH
Q 000984 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDP-----QAGEVLIDGINLKEFQLQW 457 (1198)
Q Consensus 383 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~-----~~G~i~i~g~~~~~~~~~~ 457 (1198)
.++++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|.|+++| ++|+|.++|.++.+.+...
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~ 79 (250)
T PRK14247 3 KIEIRDLKVSFGQ---VEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIE 79 (250)
T ss_pred eEEEEeeEEEECC---eeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHHH
Confidence 4899999999963 4599999999999999999999999999999999999974 6999999999998888788
Q ss_pred HhcceEEEcCCCCCC-cccHHHHHhcCCCCC----CH----HHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHH
Q 000984 458 IRKKIGLVSQEPVLF-TGSIKDNIAYGKDDA----TT----EEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQK 528 (1198)
Q Consensus 458 ~r~~i~~v~Q~~~l~-~~ti~~Ni~~~~~~~----~~----~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqk 528 (1198)
+|++++|++|+|.++ ..|++||+.++.... .. +++.++++..++.+. ++........+||||||
T Consensus 80 ~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-------~~~~~~~~~~~LSgG~~ 152 (250)
T PRK14247 80 LRRRVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDE-------VKDRLDAPAGKLSGGQQ 152 (250)
T ss_pred HhccEEEEeccCccCCCCcHHHHHHHHHHhccccCCHHHHHHHHHHHHHHcCCCcc-------hhhhhcCCcccCCHHHH
Confidence 889999999999755 689999998753211 11 223333333332211 12334566678999999
Q ss_pred HHHhHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhCCCeEEEEecCcchhh-ccCEEEEEeCCEEEEecChhhH
Q 000984 529 QRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKGTHSKL 607 (1198)
Q Consensus 529 qri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l 607 (1198)
||++||||++++|+++||||||++||+.+...+.+.++++.+++|+|++||+++.+. .||+|++|++|++++.|+++++
T Consensus 153 qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 232 (250)
T PRK14247 153 QRLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELKKDMTIVLVTHFPQQAARISDYVAFLYKGQIVEWGPTREV 232 (250)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCeEEEECCHHHH
Confidence 999999999999999999999999999999999999998877899999999999885 5999999999999999999998
Q ss_pred hcCC
Q 000984 608 VEDP 611 (1198)
Q Consensus 608 ~~~~ 611 (1198)
.+.+
T Consensus 233 ~~~~ 236 (250)
T PRK14247 233 FTNP 236 (250)
T ss_pred HcCC
Confidence 7653
|
|
| >COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-39 Score=330.05 Aligned_cols=220 Identities=26% Similarity=0.439 Sum_probs=191.3
Q ss_pred cEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHH-hcc
Q 000984 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWI-RKK 461 (1198)
Q Consensus 383 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~-r~~ 461 (1198)
.++++|++..|.. ..+|+++||++++||+++++||||+|||||+++|+|+.++.+|+|.++|.|+...+++.. |..
T Consensus 3 mL~v~~l~~~YG~---~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~dit~~p~~~r~r~G 79 (237)
T COG0410 3 MLEVENLSAGYGK---IQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHERARLG 79 (237)
T ss_pred ceeEEeEeecccc---eeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCeecCCCCHHHHHhCC
Confidence 4789999999964 469999999999999999999999999999999999999999999999999999988775 678
Q ss_pred eEEEcCCCCCC-cccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhhccC
Q 000984 462 IGLVSQEPVLF-TGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKD 540 (1198)
Q Consensus 462 i~~v~Q~~~l~-~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal~~~ 540 (1198)
|+||||...+| +-||.||+.+|.....+++... ..+++..+-+| -+......++.+|||||+|.+||||||..+
T Consensus 80 i~~VPegR~iF~~LTVeENL~~g~~~~~~~~~~~----~~~e~v~~lFP-~Lker~~~~aG~LSGGEQQMLAiaRALm~~ 154 (237)
T COG0410 80 IAYVPEGRRIFPRLTVEENLLLGAYARRDKEAQE----RDLEEVYELFP-RLKERRNQRAGTLSGGEQQMLAIARALMSR 154 (237)
T ss_pred eEeCcccccchhhCcHHHHHhhhhhccccccccc----ccHHHHHHHCh-hHHHHhcCcccCCChHHHHHHHHHHHHhcC
Confidence 99999999999 5799999998743222211111 11333455566 467778889999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHhHHHHHHHHHHHhC--CCeEEEEecCcchhh-ccCEEEEEeCCEEEEecChhhHhcC
Q 000984 541 PRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKGTHSKLVED 610 (1198)
Q Consensus 541 ~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~~ 610 (1198)
|++|+|||||.+|-|.-.+.|.+.|+++.+ +-||++|.++..... -+||.+||++|+|+.+|+.+||.++
T Consensus 155 PklLLLDEPs~GLaP~iv~~I~~~i~~l~~~~g~tIlLVEQn~~~Al~iaDr~yvle~Griv~~G~~~eL~~~ 227 (237)
T COG0410 155 PKLLLLDEPSEGLAPKIVEEIFEAIKELRKEGGMTILLVEQNARFALEIADRGYVLENGRIVLSGTAAELLAD 227 (237)
T ss_pred CCEEEecCCccCcCHHHHHHHHHHHHHHHHcCCcEEEEEeccHHHHHHhhCEEEEEeCCEEEEecCHHHHhcC
Confidence 999999999999999999999999999874 459999999999865 5999999999999999999999876
|
|
| >PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-39 Score=361.74 Aligned_cols=220 Identities=30% Similarity=0.595 Sum_probs=186.3
Q ss_pred cEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcce
Q 000984 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKI 462 (1198)
Q Consensus 383 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i 462 (1198)
.|+++|++++|+.. ++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+|+++
T Consensus 7 ~l~~~nl~~~~~~~-~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i 85 (271)
T PRK13632 7 MIKVENVSFSYPNS-ENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKEIRKKI 85 (271)
T ss_pred EEEEEeEEEEcCCC-CccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCcCCHHHHhcce
Confidence 58999999999632 35699999999999999999999999999999999999999999999999999877777889999
Q ss_pred EEEcCCC--CCCcccHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhhc
Q 000984 463 GLVSQEP--VLFTGSIKDNIAYGKDD--ATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAIL 538 (1198)
Q Consensus 463 ~~v~Q~~--~l~~~ti~~Ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal~ 538 (1198)
+|++|+| .++..|++||+.++... .+.++... .+.+.++.+ |++........+||||||||++|||||+
T Consensus 86 ~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrl~laral~ 158 (271)
T PRK13632 86 GIIFQNPDNQFIGATVEDDIAFGLENKKVPPKKMKD-----IIDDLAKKV--GMEDYLDKEPQNLSGGQKQRVAIASVLA 158 (271)
T ss_pred EEEEeCHHHhcCcccHHHHHHhHHHHcCCCHHHHHH-----HHHHHHHHc--CCHHHhhCCcccCCHHHHHHHHHHHHHH
Confidence 9999998 45578999999875321 22232221 112233333 4555566677899999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhC--CCeEEEEecCcchhhccCEEEEEeCCEEEEecChhhHhcC
Q 000984 539 KDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVED 610 (1198)
Q Consensus 539 ~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~ 610 (1198)
++|++|||||||++||+.+.+.+.+.++++.+ ++|+|++||+++.+..||+|++|++|++++.|+++++.+.
T Consensus 159 ~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 232 (271)
T PRK13632 159 LNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDEAILADKVIVFSEGKLIAQGKPKEILNN 232 (271)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEechhHHhhCCEEEEEECCEEEEecCHHHHhcC
Confidence 99999999999999999999999999988753 4899999999998888999999999999999999888654
|
|
| >PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-39 Score=367.30 Aligned_cols=228 Identities=28% Similarity=0.435 Sum_probs=188.0
Q ss_pred cEEEEeEEEEcCCCC----------CCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCC
Q 000984 383 DIELRDVYFSYPARP----------NEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKE 452 (1198)
Q Consensus 383 ~i~~~~v~~~y~~~~----------~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~ 452 (1198)
.++++|++++|+.+. ...+++|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++.+
T Consensus 8 ~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~~G~~i~~ 87 (331)
T PRK15079 8 LLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLLG 87 (331)
T ss_pred eEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCCcEEEECCEECCc
Confidence 489999999996421 2468999999999999999999999999999999999999999999999999988
Q ss_pred cCHH---HHhcceEEEcCCC--CCC-cccHHHHHhcCC----CCCCHHHHHHHHHHhcHHHHHHhCCCCcc-chhcCCCC
Q 000984 453 FQLQ---WIRKKIGLVSQEP--VLF-TGSIKDNIAYGK----DDATTEEIRVATELANAAKFIDKLPQGID-TLVGEHGT 521 (1198)
Q Consensus 453 ~~~~---~~r~~i~~v~Q~~--~l~-~~ti~~Ni~~~~----~~~~~~~~~~~~~~~~~~~~i~~l~~g~~-t~v~~~g~ 521 (1198)
.+.. .+|++|+||+|+| .++ ..||.+||.++. +..+.++..+.. .+.++.+ |++ ........
T Consensus 88 ~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~~~~~~~~~~~~~-----~~~l~~v--gl~~~~~~~~p~ 160 (331)
T PRK15079 88 MKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRV-----KAMMLKV--GLLPNLINRYPH 160 (331)
T ss_pred CCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhccCCCHHHHHHHH-----HHHHHHc--CCChHHhcCCcc
Confidence 8754 3578899999999 466 579999997531 112333322211 1222222 332 23466678
Q ss_pred CCChHHHHHHhHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhC--CCeEEEEecCcchhhc-cCEEEEEeCCEE
Q 000984 522 QLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRN-ADMIAVIHRGKI 598 (1198)
Q Consensus 522 ~lSgGqkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~~-~d~i~~l~~G~i 598 (1198)
+||||||||++|||||+.+|++||+||||++||+.+...+.+.++++.+ +.|+|+|||+++.+.. ||+|++|++|+|
T Consensus 161 ~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTHdl~~~~~~~dri~vl~~G~i 240 (331)
T PRK15079 161 EFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLAVVKHISDRVLVMYLGHA 240 (331)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 8999999999999999999999999999999999999999999988754 7899999999999976 999999999999
Q ss_pred EEecChhhHhcCCCchhHH
Q 000984 599 VEKGTHSKLVEDPEGAYSQ 617 (1198)
Q Consensus 599 ~~~g~~~~l~~~~~~~~~~ 617 (1198)
+|.|+++++.+++...|.+
T Consensus 241 ve~g~~~~i~~~~~~py~~ 259 (331)
T PRK15079 241 VELGTYDEVYHNPLHPYTK 259 (331)
T ss_pred EEEcCHHHHHcCCCCHHHH
Confidence 9999999998776556655
|
|
| >PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-39 Score=354.33 Aligned_cols=214 Identities=26% Similarity=0.456 Sum_probs=178.5
Q ss_pred cEEEEeEEEEcCCCC-CCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHH---H
Q 000984 383 DIELRDVYFSYPARP-NEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQW---I 458 (1198)
Q Consensus 383 ~i~~~~v~~~y~~~~-~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~---~ 458 (1198)
.++++|++++|+... ..++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+... +
T Consensus 5 ~l~~~~l~~~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~ 84 (233)
T PRK11629 5 LLQCDNLCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAEL 84 (233)
T ss_pred eEEEEeEEEEcCCCCcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCHHHHHHH
Confidence 489999999997432 146999999999999999999999999999999999999999999999999998877643 3
Q ss_pred h-cceEEEcCCCCCCc-ccHHHHHhcCCC--CCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHH
Q 000984 459 R-KKIGLVSQEPVLFT-GSIKDNIAYGKD--DATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIA 534 (1198)
Q Consensus 459 r-~~i~~v~Q~~~l~~-~ti~~Ni~~~~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lA 534 (1198)
| +.++|++|+|.+|. .|++||+.++.. ....++..+ .+.+.++.+ |++........+||||||||++||
T Consensus 85 ~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--gl~~~~~~~~~~LSgG~~qrl~la 157 (233)
T PRK11629 85 RNQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEINS-----RALEMLAAV--GLEHRANHRPSELSGGERQRVAIA 157 (233)
T ss_pred HhccEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHH-----HHHHHHHHc--CCchhhhCChhhCCHHHHHHHHHH
Confidence 3 67999999999886 499999987421 112222111 112233333 555556667789999999999999
Q ss_pred HhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh--CCCeEEEEecCcchhhccCEEEEEeCCEEEEecC
Q 000984 535 RAILKDPRILLLDEATSALDAESEKVVQEALDRIM--VNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGT 603 (1198)
Q Consensus 535 Ral~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~--~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~ 603 (1198)
||++.+|++|||||||++||+.+.+.+.+.|+++. +++|+|++||+++.+..+|++++|++|++++.|+
T Consensus 158 ~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~~~~~~~~~~~~l~~G~i~~~~~ 228 (233)
T PRK11629 158 RALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQLAKRMSRQLEMRDGRLTAELS 228 (233)
T ss_pred HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhhCEEEEEECCEEEEEec
Confidence 99999999999999999999999999999998874 4789999999999998889999999999998775
|
|
| >PRK14251 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-39 Score=359.40 Aligned_cols=220 Identities=33% Similarity=0.512 Sum_probs=182.9
Q ss_pred cEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCC-----CCCCeEEECCeecCC--cCH
Q 000984 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYD-----PQAGEVLIDGINLKE--FQL 455 (1198)
Q Consensus 383 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~-----~~~G~i~i~g~~~~~--~~~ 455 (1198)
.|+++|++++|+. +++|+|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|.++.. .+.
T Consensus 4 ~l~~~~l~~~~~~---~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~~~ 80 (251)
T PRK14251 4 IISAKDVHLSYGN---YEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMDL 80 (251)
T ss_pred eEEEEeeEEEECC---eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccchH
Confidence 4899999999963 469999999999999999999999999999999999997 479999999998854 344
Q ss_pred HHHhcceEEEcCCCCCCcccHHHHHhcCCCCC---CH----HHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHH
Q 000984 456 QWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDA---TT----EEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQK 528 (1198)
Q Consensus 456 ~~~r~~i~~v~Q~~~l~~~ti~~Ni~~~~~~~---~~----~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqk 528 (1198)
..+|+.++|++|++.+|..|++||+.++.... .. +++..+++..++.+ ...........+||||||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~~~~~~~~~~~~LS~Gq~ 153 (251)
T PRK14251 81 VELRKEVGMVFQQPTPFPFSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWK-------ETKDNLDRNAQAFSGGQQ 153 (251)
T ss_pred HHhhccEEEEecCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCc-------chHHHhccChhhCCHHHH
Confidence 56788999999999999999999998753211 11 12222333322211 111234566789999999
Q ss_pred HHHhHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhCCCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChhhH
Q 000984 529 QRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKL 607 (1198)
Q Consensus 529 qri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l 607 (1198)
||++||||++++|+++||||||++||+.+.+.+.+.++++.+++|+|++||+++.+.. ||+|++|++|++++.|+++++
T Consensus 154 qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 233 (251)
T PRK14251 154 QRICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELKHQYTFIMVTHNLQQAGRISDQTAFLMNGDLIEAGPTEEM 233 (251)
T ss_pred HHHHHHHHHhcCCCEEEecCCCccCCHHHHHHHHHHHHHHHcCCeEEEEECCHHHHHhhcCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999988777899999999999765 999999999999999999998
Q ss_pred hcCCC
Q 000984 608 VEDPE 612 (1198)
Q Consensus 608 ~~~~~ 612 (1198)
...+.
T Consensus 234 ~~~~~ 238 (251)
T PRK14251 234 FIAPK 238 (251)
T ss_pred HhCCC
Confidence 76543
|
|
| >PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-39 Score=362.41 Aligned_cols=217 Identities=32% Similarity=0.520 Sum_probs=186.0
Q ss_pred cEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcce
Q 000984 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKI 462 (1198)
Q Consensus 383 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i 462 (1198)
.|+++|++++|+.....++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.++.+.+...+|+++
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~i 83 (277)
T PRK13642 4 ILEVENLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLRRKI 83 (277)
T ss_pred eEEEEEEEEEcCCCCcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEECCcCCHHHHhcce
Confidence 48999999999743334699999999999999999999999999999999999999999999999999887777888999
Q ss_pred EEEcCCCC--CCcccHHHHHhcCCC--CCCHHH----HHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHH
Q 000984 463 GLVSQEPV--LFTGSIKDNIAYGKD--DATTEE----IRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIA 534 (1198)
Q Consensus 463 ~~v~Q~~~--l~~~ti~~Ni~~~~~--~~~~~~----~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lA 534 (1198)
+|++|+|. ++..|+.|||.++.. ....++ +..+++.++ +..........||||||||++||
T Consensus 84 ~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~-----------l~~~~~~~~~~LS~G~~qrv~lA 152 (277)
T PRK13642 84 GMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKRVDEALLAVN-----------MLDFKTREPARLSGGQKQRVAVA 152 (277)
T ss_pred EEEEECHHHhhccCCHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCC-----------CHhHhhCCcccCCHHHHHHHHHH
Confidence 99999984 668899999987532 123332 233333333 33334455678999999999999
Q ss_pred HhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhC--CCeEEEEecCcchhhccCEEEEEeCCEEEEecChhhHhcC
Q 000984 535 RAILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVED 610 (1198)
Q Consensus 535 Ral~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~ 610 (1198)
|||+++|+++||||||++||+.+.+.+.+.++++.+ ++|+|++||+++.+..||+|++|++|++++.|+++++...
T Consensus 153 raL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 230 (277)
T PRK13642 153 GIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLDEAASSDRILVMKAGEIIKEAAPSELFAT 230 (277)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 999999999999999999999999999999988754 7899999999999988999999999999999999998764
|
|
| >cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-39 Score=352.37 Aligned_cols=211 Identities=27% Similarity=0.524 Sum_probs=175.7
Q ss_pred EEEEeEEEEcCCCCC-CccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcce
Q 000984 384 IELRDVYFSYPARPN-EQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKI 462 (1198)
Q Consensus 384 i~~~~v~~~y~~~~~-~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i 462 (1198)
|+++|++++|+.... .++|+|+||++++||+++|+|+||||||||+++|.|+++|++|+|.++|.++.. ...++|+++
T Consensus 2 l~~~~v~~~~~~~~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~-~~~~~~~~i 80 (218)
T cd03266 2 ITADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVK-EPAEARRRL 80 (218)
T ss_pred eEEEEEEEecCCCCccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEccc-CHHHHHhhE
Confidence 689999999974311 269999999999999999999999999999999999999999999999999875 345678899
Q ss_pred EEEcCCCCCCc-ccHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhhcc
Q 000984 463 GLVSQEPVLFT-GSIKDNIAYGKDD--ATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILK 539 (1198)
Q Consensus 463 ~~v~Q~~~l~~-~ti~~Ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal~~ 539 (1198)
+|++|+|.+|. .|++||+.+.... .+.++... .+.+.++.+ |++........+||||||||++||||++.
T Consensus 81 ~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~laral~~ 153 (218)
T cd03266 81 GFVSDSTGLYDRLTARENLEYFAGLYGLKGDELTA-----RLEELADRL--GMEELLDRRVGGFSTGMRQKVAIARALVH 153 (218)
T ss_pred EEecCCcccCcCCCHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHHc--CCHHHHhhhhhhcCHHHHHHHHHHHHHhc
Confidence 99999999987 4999999764211 12222111 112233443 55555667778999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHhHHHHHHHHHHHh-CCCeEEEEecCcchhhc-cCEEEEEeCCEEEEec
Q 000984 540 DPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKG 602 (1198)
Q Consensus 540 ~~~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g 602 (1198)
+|+++||||||++||+.+.+.+.+.++++. +++|+|++||+++.+.. ||++++|++|++++.|
T Consensus 154 ~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~i~~~~ 218 (218)
T cd03266 154 DPPVLLLDEPTTGLDVMATRALREFIRQLRALGKCILFSTHIMQEVERLCDRVVVLHRGRVVYEG 218 (218)
T ss_pred CCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhcCEEEEEECCEEeecC
Confidence 999999999999999999999999998875 47899999999998765 9999999999998754
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein. |
| >PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-39 Score=362.13 Aligned_cols=217 Identities=31% Similarity=0.556 Sum_probs=186.1
Q ss_pred ccEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCC---CeEEECCeecCCcCHHHH
Q 000984 382 GDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQA---GEVLIDGINLKEFQLQWI 458 (1198)
Q Consensus 382 g~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~---G~i~i~g~~~~~~~~~~~ 458 (1198)
+.|+++|++++|+.. ..++|+|+||+|++||+++|+||||||||||+++|+|+++|++ |+|.++|.++...+...+
T Consensus 4 ~~l~i~~l~~~~~~~-~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~~ 82 (282)
T PRK13640 4 NIVEFKHVSFTYPDS-KKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWDI 82 (282)
T ss_pred ceEEEEEEEEEcCCC-CccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHHHH
Confidence 358999999999643 2469999999999999999999999999999999999999987 899999999987777778
Q ss_pred hcceEEEcCCCC--CCcccHHHHHhcCCCC--CCHHH----HHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHH
Q 000984 459 RKKIGLVSQEPV--LFTGSIKDNIAYGKDD--ATTEE----IRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQR 530 (1198)
Q Consensus 459 r~~i~~v~Q~~~--l~~~ti~~Ni~~~~~~--~~~~~----~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqr 530 (1198)
+++++|++|+|. ++..|++|||.++... .+.++ +..+++.+ |++........+||||||||
T Consensus 83 ~~~ig~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~-----------~L~~~~~~~~~~LS~G~~qr 151 (282)
T PRK13640 83 REKVGIVFQNPDNQFVGATVGDDVAFGLENRAVPRPEMIKIVRDVLADV-----------GMLDYIDSEPANLSGGQKQR 151 (282)
T ss_pred HhheEEEEECHHHhhccCCHHHHHHhhHHhCCCCHHHHHHHHHHHHHHC-----------CChhHhcCCcccCCHHHHHH
Confidence 889999999994 6688999999875322 22322 33333333 44444556667999999999
Q ss_pred HhHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhC--CCeEEEEecCcchhhccCEEEEEeCCEEEEecChhhHh
Q 000984 531 IAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLV 608 (1198)
Q Consensus 531 i~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~ 608 (1198)
++||||++.+|+++||||||++||+.+.+.+.+.|+++.+ ++|+|++||+++.+..||++++|++|++++.|+++++.
T Consensus 152 v~laral~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 231 (282)
T PRK13640 152 VAIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDEANMADQVLVLDDGKLLAQGSPVEIF 231 (282)
T ss_pred HHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 9999999999999999999999999999999999988753 68999999999999889999999999999999999886
Q ss_pred cC
Q 000984 609 ED 610 (1198)
Q Consensus 609 ~~ 610 (1198)
..
T Consensus 232 ~~ 233 (282)
T PRK13640 232 SK 233 (282)
T ss_pred cC
Confidence 54
|
|
| >cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-39 Score=351.86 Aligned_cols=207 Identities=36% Similarity=0.607 Sum_probs=172.4
Q ss_pred EEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcceE
Q 000984 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIG 463 (1198)
Q Consensus 384 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~ 463 (1198)
++++|++++|++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.+. .+++++
T Consensus 1 l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~--~~~~i~ 75 (213)
T cd03259 1 LELKGLSKTYGS---VRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPP--ERRNIG 75 (213)
T ss_pred CeeeeeEEEeCC---eeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCcCch--hhccEE
Confidence 468999999963 469999999999999999999999999999999999999999999999999876543 467899
Q ss_pred EEcCCCCCCc-ccHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhhccC
Q 000984 464 LVSQEPVLFT-GSIKDNIAYGKDD--ATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKD 540 (1198)
Q Consensus 464 ~v~Q~~~l~~-~ti~~Ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal~~~ 540 (1198)
|+||+|.++. .|++||+.++... .+.++..+ .+.+.++.+ |++........+||||||||++|||||+++
T Consensus 76 ~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LSgG~~qrl~la~al~~~ 148 (213)
T cd03259 76 MVFQDYALFPHLTVAENIAFGLKLRGVPKAEIRA-----RVRELLELV--GLEGLLNRYPHELSGGQQQRVALARALARE 148 (213)
T ss_pred EEcCchhhccCCcHHHHHHhHHHHcCCCHHHHHH-----HHHHHHHHc--CChhhhhcChhhCCHHHHHHHHHHHHHhcC
Confidence 9999998885 6999999875321 11211111 112233333 555555666678999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHhHHHHHHHHHHHhC--CCeEEEEecCcchhhc-cCEEEEEeCCEEEEec
Q 000984 541 PRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKG 602 (1198)
Q Consensus 541 ~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g 602 (1198)
|+++||||||++||+.+.+.+.+.|+++.+ ++|+|++||+++.+.. ||+|++|++|++++.|
T Consensus 149 p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~g 213 (213)
T cd03259 149 PSLLLLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQEEALALADRIAVMNEGRIVQVG 213 (213)
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhcCEEEEEECCEEEecC
Confidence 999999999999999999999999988753 7899999999998765 9999999999998765
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14236 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-39 Score=360.44 Aligned_cols=220 Identities=33% Similarity=0.501 Sum_probs=185.8
Q ss_pred cccEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCC-----CCCeEEECCeecCC--c
Q 000984 381 RGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDP-----QAGEVLIDGINLKE--F 453 (1198)
Q Consensus 381 ~g~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~-----~~G~i~i~g~~~~~--~ 453 (1198)
.+.|+++|++++|++ +++|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|.++|.++.. .
T Consensus 23 ~~~l~~~nl~~~~~~---~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~~ 99 (272)
T PRK14236 23 QTALEVRNLNLFYGD---KQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKV 99 (272)
T ss_pred CcEEEEEEEEEEECC---eeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECccccc
Confidence 446999999999963 4699999999999999999999999999999999999874 89999999999864 3
Q ss_pred CHHHHhcceEEEcCCCCCCcccHHHHHhcCCCCC---CH----HHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChH
Q 000984 454 QLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDA---TT----EEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGG 526 (1198)
Q Consensus 454 ~~~~~r~~i~~v~Q~~~l~~~ti~~Ni~~~~~~~---~~----~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgG 526 (1198)
+...+|++++|++|++.+|..|++||+.++.... .. +++.++++..++.+. ..+..+..+..||||
T Consensus 100 ~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-------~~~~~~~~~~~LS~G 172 (272)
T PRK14236 100 DVAELRRRVGMVFQRPNPFPKSIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWDE-------VKDRLHENAFGLSGG 172 (272)
T ss_pred CHHHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCChh-------HHHHhhCCcccCCHH
Confidence 4567788999999999999899999998753211 11 223333333333222 224567778899999
Q ss_pred HHHHHhHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhCCCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChh
Q 000984 527 QKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHS 605 (1198)
Q Consensus 527 qkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~ 605 (1198)
||||++||||++++|+++||||||++||+.+.+.+.+.++++.+++|+|++||+++.+.. ||+|++|++|++++.|+++
T Consensus 173 q~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~ 252 (272)
T PRK14236 173 QQQRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKSKYTIVIVTHNMQQAARVSDYTAFMYMGKLVEYGDTD 252 (272)
T ss_pred HHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEEeCCHHHHHhhCCEEEEEECCEEEecCCHH
Confidence 999999999999999999999999999999999999999988778999999999998764 9999999999999999999
Q ss_pred hHhcC
Q 000984 606 KLVED 610 (1198)
Q Consensus 606 ~l~~~ 610 (1198)
++.++
T Consensus 253 ~~~~~ 257 (272)
T PRK14236 253 TLFTS 257 (272)
T ss_pred HHhcC
Confidence 98764
|
|
| >PRK13537 nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-39 Score=367.16 Aligned_cols=217 Identities=24% Similarity=0.459 Sum_probs=180.5
Q ss_pred cEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcce
Q 000984 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKI 462 (1198)
Q Consensus 383 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i 462 (1198)
.|+++|++++|++ ..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+ ...|++|
T Consensus 7 ~i~i~~l~k~~~~---~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~~~~-~~~~~~i 82 (306)
T PRK13537 7 PIDFRNVEKRYGD---KLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRA-RHARQRV 82 (306)
T ss_pred eEEEEeEEEEECC---eEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEecccch-HHHHhcE
Confidence 5999999999963 46999999999999999999999999999999999999999999999999987654 4578899
Q ss_pred EEEcCCCCCCc-ccHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhhcc
Q 000984 463 GLVSQEPVLFT-GSIKDNIAYGKDD--ATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILK 539 (1198)
Q Consensus 463 ~~v~Q~~~l~~-~ti~~Ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal~~ 539 (1198)
||+||+|.++. .|++||+.+.... .+..+..+.. .+.++.+ |+.........+||||||||++|||||++
T Consensus 83 g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~-----~~~l~~~--~l~~~~~~~~~~LS~G~~qrl~la~aL~~ 155 (306)
T PRK13537 83 GVVPQFDNLDPDFTVRENLLVFGRYFGLSAAAARALV-----PPLLEFA--KLENKADAKVGELSGGMKRRLTLARALVN 155 (306)
T ss_pred EEEeccCcCCCCCcHHHHHHHHHHHcCCCHHHHHHHH-----HHHHHHc--CCchHhcCchhhCCHHHHHHHHHHHHHhC
Confidence 99999999885 7999999853221 1222222111 1222222 33333344445899999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHhHHHHHHHHHHHhC-CCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChhhHhcC
Q 000984 540 DPRILLLDEATSALDAESEKVVQEALDRIMV-NRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVED 610 (1198)
Q Consensus 540 ~~~illlDe~ts~lD~~~~~~i~~~i~~~~~-~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 610 (1198)
+|++|||||||++||+.+.+.+.+.|+++.+ ++|+|++||+++.+.. ||+|++|++|++++.|+++++.+.
T Consensus 156 ~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~till~sH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~~~ 228 (306)
T PRK13537 156 DPDVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTHFMEEAERLCDRLCVIEEGRKIAEGAPHALIES 228 (306)
T ss_pred CCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhc
Confidence 9999999999999999999999999988754 7899999999999865 999999999999999999998654
|
|
| >PRK14248 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-39 Score=360.32 Aligned_cols=218 Identities=30% Similarity=0.471 Sum_probs=182.3
Q ss_pred cEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCC-----CCCCeEEECCeecCC--cCH
Q 000984 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYD-----PQAGEVLIDGINLKE--FQL 455 (1198)
Q Consensus 383 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~-----~~~G~i~i~g~~~~~--~~~ 455 (1198)
.|+++|++++|++ .++|+|+||++++||+++|+|+||||||||+++|+|+++ |++|+|.++|.++.. .+.
T Consensus 21 ~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 97 (268)
T PRK14248 21 ILEVKDLSIYYGE---KRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNINV 97 (268)
T ss_pred eEEEEEEEEEeCC---ceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEcccccccH
Confidence 5899999999963 469999999999999999999999999999999999864 689999999999864 344
Q ss_pred HHHhcceEEEcCCCCCCcccHHHHHhcCCCCC---CH----HHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHH
Q 000984 456 QWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDA---TT----EEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQK 528 (1198)
Q Consensus 456 ~~~r~~i~~v~Q~~~l~~~ti~~Ni~~~~~~~---~~----~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqk 528 (1198)
..++++++|++|+|.+|.+|++||+.++.... .. +.+.++++..++. .++....+....+||||||
T Consensus 98 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-------~~~~~~~~~~~~~LSgGq~ 170 (268)
T PRK14248 98 VNLRREIGMVFQKPNPFPKSIYNNITHALKYAGERRKSVLDEIVEESLTKAALW-------DEVKDRLHSSALSLSGGQQ 170 (268)
T ss_pred HHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCC-------cchHHHHhcCcccCCHHHH
Confidence 56788999999999999999999998753211 11 1222233222221 1122345677789999999
Q ss_pred HHHhHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhCCCeEEEEecCcchhh-ccCEEEEEeCCEEEEecChhhH
Q 000984 529 QRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKGTHSKL 607 (1198)
Q Consensus 529 qri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l 607 (1198)
||++||||++.+|++|||||||++||+.+...+.+.++++.+++|+|++||+++.+. .||+|++|++|++++.|+++++
T Consensus 171 qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 250 (268)
T PRK14248 171 QRLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKEEYSIIIVTHNMQQALRVSDRTAFFLNGDLVEYDQTEQI 250 (268)
T ss_pred HHHHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhcCCEEEEEEeCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 999999999999999999999999999999999999998877789999999999876 4999999999999999999998
Q ss_pred hcC
Q 000984 608 VED 610 (1198)
Q Consensus 608 ~~~ 610 (1198)
..+
T Consensus 251 ~~~ 253 (268)
T PRK14248 251 FTS 253 (268)
T ss_pred HhC
Confidence 765
|
|
| >cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-39 Score=339.54 Aligned_cols=178 Identities=34% Similarity=0.670 Sum_probs=165.1
Q ss_pred EEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcceE
Q 000984 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIG 463 (1198)
Q Consensus 384 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~ 463 (1198)
|+++|++++|+.. ++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++... ...+|++++
T Consensus 1 i~~~~~~~~~~~~-~~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~-~~~~~~~i~ 78 (178)
T cd03247 1 LSINNVSFSYPEQ-EQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDL-EKALSSLIS 78 (178)
T ss_pred CEEEEEEEEeCCC-CccceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHH-HHHHHhhEE
Confidence 4789999999643 24699999999999999999999999999999999999999999999999988766 567788999
Q ss_pred EEcCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhhccCCCE
Q 000984 464 LVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRI 543 (1198)
Q Consensus 464 ~v~Q~~~l~~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal~~~~~i 543 (1198)
|++|+|++|+.|++||+ ...||||||||++||||++++|++
T Consensus 79 ~~~q~~~~~~~tv~~~i---------------------------------------~~~LS~G~~qrv~laral~~~p~~ 119 (178)
T cd03247 79 VLNQRPYLFDTTLRNNL---------------------------------------GRRFSGGERQRLALARILLQDAPI 119 (178)
T ss_pred EEccCCeeecccHHHhh---------------------------------------cccCCHHHHHHHHHHHHHhcCCCE
Confidence 99999999999999998 468999999999999999999999
Q ss_pred EEEeCCCCCCCHHhHHHHHHHHHHHhCCCeEEEEecCcchhhccCEEEEEeCCEEEEec
Q 000984 544 LLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKG 602 (1198)
Q Consensus 544 lllDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g 602 (1198)
+||||||++||+.+.+.+.+.++++.+++|+|++||+++.+..||++++|++|++++.|
T Consensus 120 lllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~~~~l~~g~i~~~~ 178 (178)
T cd03247 120 VLLDEPTVGLDPITERQLLSLIFEVLKDKTLIWITHHLTGIEHMDKILFLENGKIIMQG 178 (178)
T ss_pred EEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHhCCEEEEEECCEEEecC
Confidence 99999999999999999999998887789999999999999889999999999998764
|
The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. |
| >PRK14240 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-39 Score=356.83 Aligned_cols=219 Identities=34% Similarity=0.528 Sum_probs=183.6
Q ss_pred ccEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCC-----CCCeEEECCeecCC--cC
Q 000984 382 GDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDP-----QAGEVLIDGINLKE--FQ 454 (1198)
Q Consensus 382 g~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~-----~~G~i~i~g~~~~~--~~ 454 (1198)
|.|+++|++++|++ +++++|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.++.+ .+
T Consensus 2 ~~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~ 78 (250)
T PRK14240 2 GKISVKDLDLFYGD---FQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDID 78 (250)
T ss_pred CeEEEEEEEEEECC---ceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccc
Confidence 46899999999963 3699999999999999999999999999999999998763 68999999999874 35
Q ss_pred HHHHhcceEEEcCCCCCCcccHHHHHhcCCCC---CCH----HHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHH
Q 000984 455 LQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDD---ATT----EEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQ 527 (1198)
Q Consensus 455 ~~~~r~~i~~v~Q~~~l~~~ti~~Ni~~~~~~---~~~----~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGq 527 (1198)
...+|++++|++|+|.+|..|+++|+.++... ... +++.++++..++.+ ++.........+|||||
T Consensus 79 ~~~~~~~i~~~~q~~~~~~~t~~~ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~l~~~~~~~~~~LS~G~ 151 (250)
T PRK14240 79 VNQLRKRVGMVFQQPNPFPMSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWD-------EVKDRLKKSALGLSGGQ 151 (250)
T ss_pred hHHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCch-------hhHHHHhcCCCCCCHHH
Confidence 56678899999999999999999999875311 111 22233333333221 22234566778999999
Q ss_pred HHHHhHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhCCCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChhh
Q 000984 528 KQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSK 606 (1198)
Q Consensus 528 kqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~ 606 (1198)
|||++||||++.+|+++||||||++||+.+...+.+.++++.+++|+|++||+++.+.. ||+|++|++|++++.|++++
T Consensus 152 ~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~ 231 (250)
T PRK14240 152 QQRLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELKKDYTIVIVTHNMQQASRISDKTAFFLNGEIVEFGDTVD 231 (250)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEEeCHHHHHhhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999999988778899999999998765 99999999999999999998
Q ss_pred HhcC
Q 000984 607 LVED 610 (1198)
Q Consensus 607 l~~~ 610 (1198)
+..+
T Consensus 232 ~~~~ 235 (250)
T PRK14240 232 LFTN 235 (250)
T ss_pred HHhC
Confidence 8754
|
|
| >PRK14237 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-39 Score=358.83 Aligned_cols=219 Identities=30% Similarity=0.471 Sum_probs=185.3
Q ss_pred ccEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCC-----CCCCeEEECCeecCC--cC
Q 000984 382 GDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYD-----PQAGEVLIDGINLKE--FQ 454 (1198)
Q Consensus 382 g~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~-----~~~G~i~i~g~~~~~--~~ 454 (1198)
..|+++|++++|+. +++|+|+||++++||+++|+|+||||||||+++|.|+++ |++|+|.+||.++.. .+
T Consensus 19 ~~l~~~nl~~~~~~---~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~ 95 (267)
T PRK14237 19 IALSTKDLHVYYGK---KEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEIN 95 (267)
T ss_pred eEEEEeeEEEEECC---eeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcccccCC
Confidence 46999999999953 469999999999999999999999999999999999996 579999999999864 34
Q ss_pred HHHHhcceEEEcCCCCCCcccHHHHHhcCCCC---CCH----HHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHH
Q 000984 455 LQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDD---ATT----EEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQ 527 (1198)
Q Consensus 455 ~~~~r~~i~~v~Q~~~l~~~ti~~Ni~~~~~~---~~~----~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGq 527 (1198)
...+|+.++|++|++.+|..|++||+.++... ... +++.++++..++.+ +.+...+.....|||||
T Consensus 96 ~~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~i~~~~~~~~~~LS~G~ 168 (267)
T PRK14237 96 VYEMRKHIGMVFQRPNPFAKSIYENITFALERAGVKDKKVLDEIVETSLKQAALWD-------QVKDDLHKSALTLSGGQ 168 (267)
T ss_pred hHHHhcceEEEecCCccccccHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCc-------hhhhhhcCCcccCCHHH
Confidence 56678899999999999999999999875321 111 22333333333322 22345667788999999
Q ss_pred HHHHhHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhCCCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChhh
Q 000984 528 KQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSK 606 (1198)
Q Consensus 528 kqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~ 606 (1198)
|||++||||++++|+++||||||++||+.+.+.+.+.|+++.++.|+|++||+++.+.. ||+|++|++|++++.|++++
T Consensus 169 ~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 248 (267)
T PRK14237 169 QQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELKKNYTIIIVTHNMQQAARASDYTAFFYLGDLIEYDKTRN 248 (267)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhcCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999999988778999999999998854 99999999999999999999
Q ss_pred HhcC
Q 000984 607 LVED 610 (1198)
Q Consensus 607 l~~~ 610 (1198)
+.+.
T Consensus 249 ~~~~ 252 (267)
T PRK14237 249 IFTN 252 (267)
T ss_pred HhcC
Confidence 8764
|
|
| >PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-39 Score=360.77 Aligned_cols=219 Identities=28% Similarity=0.472 Sum_probs=182.2
Q ss_pred cEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHH---HHh
Q 000984 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQ---WIR 459 (1198)
Q Consensus 383 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~---~~r 459 (1198)
.|+++|++++|+. +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+.. .++
T Consensus 7 ~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~ 83 (269)
T PRK11831 7 LVDMRGVSFTRGN---RCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYTVR 83 (269)
T ss_pred eEEEeCeEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccChhhHHHHh
Confidence 4899999999963 4699999999999999999999999999999999999999999999999998776543 357
Q ss_pred cceEEEcCCCCCCcc-cHHHHHhcCCCC---CCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHH
Q 000984 460 KKIGLVSQEPVLFTG-SIKDNIAYGKDD---ATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIAR 535 (1198)
Q Consensus 460 ~~i~~v~Q~~~l~~~-ti~~Ni~~~~~~---~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lAR 535 (1198)
++++|++|++.+|.+ |++||+.++... .+.++... .+.+.++.+ |+.........+||||||||++|||
T Consensus 84 ~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~-----~~~~~l~~~--gl~~~~~~~~~~LSgGq~qrv~lar 156 (269)
T PRK11831 84 KRMSMLFQSGALFTDMNVFDNVAYPLREHTQLPAPLLHS-----TVMMKLEAV--GLRGAAKLMPSELSGGMARRAALAR 156 (269)
T ss_pred hcEEEEecccccCCCCCHHHHHHHHHHHccCCCHHHHHH-----HHHHHHHHc--CChhhhhCChhhCCHHHHHHHHHHH
Confidence 789999999999975 999999864211 12211111 111223333 4444455566789999999999999
Q ss_pred hhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhC--CCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChhhHhcCC
Q 000984 536 AILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVEDP 611 (1198)
Q Consensus 536 al~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~ 611 (1198)
|++++|+++||||||++||+.+.+.+.+.|+++.+ ++|+|++||+++.+.. ||+|++|++|++++.|+++++.+..
T Consensus 157 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~ 235 (269)
T PRK11831 157 AIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVPEVLSIADHAYIVADKKIVAHGSAQALQANP 235 (269)
T ss_pred HHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhhCEEEEEECCEEEEeCCHHHHhcCC
Confidence 99999999999999999999999999999988753 6899999999998865 9999999999999999999987653
|
|
| >cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-39 Score=353.47 Aligned_cols=208 Identities=36% Similarity=0.533 Sum_probs=173.4
Q ss_pred EEEEeEEEEcCCCC-CCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHH----H
Q 000984 384 IELRDVYFSYPARP-NEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQW----I 458 (1198)
Q Consensus 384 i~~~~v~~~y~~~~-~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~----~ 458 (1198)
|+++|++++|+... .+++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.+... .
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~ 80 (218)
T cd03255 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAFR 80 (218)
T ss_pred CeEeeeEEEecCCCcceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcchhHHHHHH
Confidence 46899999996421 146999999999999999999999999999999999999999999999999988776432 4
Q ss_pred hcceEEEcCCCCCCcc-cHHHHHhcCCCCC--CHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHH
Q 000984 459 RKKIGLVSQEPVLFTG-SIKDNIAYGKDDA--TTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIAR 535 (1198)
Q Consensus 459 r~~i~~v~Q~~~l~~~-ti~~Ni~~~~~~~--~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lAR 535 (1198)
+++++|++|+|.+|.+ |++||+.++.... ...+.. ..+.+.++.+ |++........+||||||||++|||
T Consensus 81 ~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~la~ 153 (218)
T cd03255 81 RRHIGFVFQSFNLLPDLTALENVELPLLLAGVPKKERR-----ERAEELLERV--GLGDRLNHYPSELSGGQQQRVAIAR 153 (218)
T ss_pred hhcEEEEeeccccCCCCcHHHHHHHHHhhcCCCHHHHH-----HHHHHHHHHc--CCchhhhcChhhcCHHHHHHHHHHH
Confidence 5789999999998875 9999998753211 111111 1122344444 5666666777899999999999999
Q ss_pred hhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhC--CCeEEEEecCcchhhccCEEEEEeCCEE
Q 000984 536 AILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRNADMIAVIHRGKI 598 (1198)
Q Consensus 536 al~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~~~d~i~~l~~G~i 598 (1198)
|++.+|++|||||||++||+.+.+.+.+.++++.+ ++|+|++||+++.+..||+|++|++|++
T Consensus 154 al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~d~v~~l~~G~i 218 (218)
T cd03255 154 ALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPELAEYADRIIELRDGKI 218 (218)
T ss_pred HHccCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhcEEEEeeCCcC
Confidence 99999999999999999999999999999998764 7899999999998888999999999974
|
They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. |
| >PRK14268 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-39 Score=358.44 Aligned_cols=219 Identities=32% Similarity=0.497 Sum_probs=183.0
Q ss_pred cEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCC-----CCCeEEECCeecCCc--CH
Q 000984 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDP-----QAGEVLIDGINLKEF--QL 455 (1198)
Q Consensus 383 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~-----~~G~i~i~g~~~~~~--~~ 455 (1198)
.|+++|++++|++ +++|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|.++|.++... +.
T Consensus 12 ~l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 88 (258)
T PRK14268 12 QIKVENLNLWYGE---KQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVDV 88 (258)
T ss_pred eEEEeeeEEEeCC---eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccchH
Confidence 5999999999963 4599999999999999999999999999999999999975 799999999998653 24
Q ss_pred HHHhcceEEEcCCCCCCcccHHHHHhcCCCC--CCHHH----HHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHH
Q 000984 456 QWIRKKIGLVSQEPVLFTGSIKDNIAYGKDD--ATTEE----IRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQ 529 (1198)
Q Consensus 456 ~~~r~~i~~v~Q~~~l~~~ti~~Ni~~~~~~--~~~~~----~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkq 529 (1198)
..+|+.++|++|++.+|..|++||+.++... .+.++ +.++++.+++.+ ............|||||||
T Consensus 89 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~~~~~~~~~~~~LSgG~~q 161 (258)
T PRK14268 89 VELRKNVGMVFQKPNPFPMSIYDNVAYGPRIHGANKKDLDGVVENALRSAALWD-------ETSDRLKSPALSLSGGQQQ 161 (258)
T ss_pred HHHhhhEEEEecCCccCcccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCc-------chhhhhcCChhhCCHHHHH
Confidence 4567889999999999999999999875311 12222 223333332211 1123445667789999999
Q ss_pred HHhHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhCCCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChhhHh
Q 000984 530 RIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLV 608 (1198)
Q Consensus 530 ri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~ 608 (1198)
|++|||||+.+|+++||||||++||+.+.+.+.+.++++.+++|+|++||+++.+.. ||+|++|++|++++.|+++++.
T Consensus 162 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 241 (258)
T PRK14268 162 RLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLKKDYTIVIVTHNMQQAARISDYTGFFLMGELIEFGQTRQIF 241 (258)
T ss_pred HHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhhCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 999999999999999999999999999999999999988778999999999998865 9999999999999999999987
Q ss_pred cCC
Q 000984 609 EDP 611 (1198)
Q Consensus 609 ~~~ 611 (1198)
+++
T Consensus 242 ~~~ 244 (258)
T PRK14268 242 HNP 244 (258)
T ss_pred cCC
Confidence 653
|
|
| >cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-39 Score=349.46 Aligned_cols=199 Identities=29% Similarity=0.515 Sum_probs=168.4
Q ss_pred EEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcceEE
Q 000984 385 ELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGL 464 (1198)
Q Consensus 385 ~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~~ 464 (1198)
+++|++++|++. +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. ...+++++|
T Consensus 1 ~~~~l~~~~~~~--~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~---~~~~~~i~~ 75 (205)
T cd03226 1 RIENISFSYKKG--TEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKA---KERRKSIGY 75 (205)
T ss_pred CcccEEEEeCCc--CceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhh---HHhhcceEE
Confidence 368999999641 469999999999999999999999999999999999999999999999998754 456778999
Q ss_pred EcCCC--CCCcccHHHHHhcCCCCCC--HHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhhccC
Q 000984 465 VSQEP--VLFTGSIKDNIAYGKDDAT--TEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKD 540 (1198)
Q Consensus 465 v~Q~~--~l~~~ti~~Ni~~~~~~~~--~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal~~~ 540 (1198)
++|+| .++..|++||+.++..... .+++.++++..++.+ ........||||||||++||||++.+
T Consensus 76 ~~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LS~G~~qrv~laral~~~ 144 (205)
T cd03226 76 VMQDVDYQLFTDSVREELLLGLKELDAGNEQAETVLKDLDLYA-----------LKERHPLSLSGGQKQRLAIAAALLSG 144 (205)
T ss_pred EecChhhhhhhccHHHHHhhhhhhcCccHHHHHHHHHHcCCch-----------hcCCCchhCCHHHHHHHHHHHHHHhC
Confidence 99998 4678899999987643222 234455555554433 33444568999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHhHHHHHHHHHHHh-CCCeEEEEecCcchhhc-cCEEEEEeCCEEE
Q 000984 541 PRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRN-ADMIAVIHRGKIV 599 (1198)
Q Consensus 541 ~~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~ 599 (1198)
|+++||||||++||+.+.+.+.+.++++. +++|+|++||+++.+.. ||+|++|++|+++
T Consensus 145 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~iv 205 (205)
T cd03226 145 KDLLIFDEPTSGLDYKNMERVGELIRELAAQGKAVIVITHDYEFLAKVCDRVLLLANGAIV 205 (205)
T ss_pred CCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEC
Confidence 99999999999999999999999998874 57899999999999875 9999999999975
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-39 Score=353.68 Aligned_cols=218 Identities=22% Similarity=0.379 Sum_probs=181.0
Q ss_pred cEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHH-Hhcc
Q 000984 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQW-IRKK 461 (1198)
Q Consensus 383 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~-~r~~ 461 (1198)
.|+++|++++|+. +++|+|+||+|++||+++|+||||||||||+++|.|+++|++|+|.++|.++.+.+... .++.
T Consensus 5 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~ 81 (237)
T PRK11614 5 MLSFDKVSAHYGK---IQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMREA 81 (237)
T ss_pred EEEEEeEEEeeCC---ceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEecCCCCHHHHHHhC
Confidence 4899999999963 46999999999999999999999999999999999999999999999999998877654 5778
Q ss_pred eEEEcCCCCCCc-ccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhhccC
Q 000984 462 IGLVSQEPVLFT-GSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKD 540 (1198)
Q Consensus 462 i~~v~Q~~~l~~-~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal~~~ 540 (1198)
++|++|++.+|. .|+++|+.++....+.++....+ .+.+..++ +++.........||||||||++||||++++
T Consensus 82 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~-----~~~l~~~~-~l~~~~~~~~~~LS~G~~qrl~la~al~~~ 155 (237)
T PRK11614 82 VAIVPEGRRVFSRMTVEENLAMGGFFAERDQFQERI-----KWVYELFP-RLHERRIQRAGTMSGGEQQMLAIGRALMSQ 155 (237)
T ss_pred EEEeccCcccCCCCcHHHHHHHhhhccChhHHHHHH-----HHHHHHHH-HHHHHHhCchhhCCHHHHHHHHHHHHHHhC
Confidence 999999999997 59999998754222222222111 11222221 122223446678999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHhHHHHHHHHHHHh-CCCeEEEEecCcchhh-ccCEEEEEeCCEEEEecChhhHhc
Q 000984 541 PRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKGTHSKLVE 609 (1198)
Q Consensus 541 ~~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~ 609 (1198)
|+++||||||++||+.+.+.+.+.++++. +++|+|++||+++.+. .||++++|++|++++.|+++++..
T Consensus 156 p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 226 (237)
T PRK11614 156 PRLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNANQALKLADRGYVLENGHVVLEDTGDALLA 226 (237)
T ss_pred CCEEEEcCccccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHhhCCEEEEEeCCEEEeeCCHHHHhc
Confidence 99999999999999999999999998865 4799999999999765 599999999999999999999864
|
|
| >PRK11607 potG putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-39 Score=372.94 Aligned_cols=222 Identities=32% Similarity=0.536 Sum_probs=185.4
Q ss_pred ccEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcc
Q 000984 382 GDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKK 461 (1198)
Q Consensus 382 g~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~ 461 (1198)
..++++|++++|++ .++|+|+||++++||+++|+||||||||||+++|.|+.+|++|+|.+||.++.+.+. .+++
T Consensus 18 ~~l~l~~v~~~~~~---~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~--~~r~ 92 (377)
T PRK11607 18 PLLEIRNLTKSFDG---QHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPP--YQRP 92 (377)
T ss_pred ceEEEEeEEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCH--HHCC
Confidence 35999999999963 469999999999999999999999999999999999999999999999999987664 4678
Q ss_pred eEEEcCCCCCCc-ccHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhhc
Q 000984 462 IGLVSQEPVLFT-GSIKDNIAYGKDD--ATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAIL 538 (1198)
Q Consensus 462 i~~v~Q~~~l~~-~ti~~Ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal~ 538 (1198)
++||+|++.+|. .||+|||.|+... .+..+..+ .+.+.++.+ |+.........+||||||||++|||||+
T Consensus 93 ig~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~-----~v~~~l~~l--~L~~~~~~~~~~LSgGq~QRVaLARAL~ 165 (377)
T PRK11607 93 INMMFQSYALFPHMTVEQNIAFGLKQDKLPKAEIAS-----RVNEMLGLV--HMQEFAKRKPHQLSGGQRQRVALARSLA 165 (377)
T ss_pred EEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHHc--CCchhhcCChhhCCHHHHHHHHHHHHHh
Confidence 999999999996 5999999986431 12222211 111223333 4545556666789999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhC--CCeEEEEecCcchhh-ccCEEEEEeCCEEEEecChhhHhcCCCchh
Q 000984 539 KDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKGTHSKLVEDPEGAY 615 (1198)
Q Consensus 539 ~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~ 615 (1198)
++|++||||||||+||+.+.+.+.+.++++.+ +.|+|+|||+++.+. .||+|++|++|++++.|+++++..++...|
T Consensus 166 ~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~~~~~p~~~~ 245 (377)
T PRK11607 166 KRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQEEAMTMAGRIAIMNRGKFVQIGEPEEIYEHPTTRY 245 (377)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEeCCEEEEEcCHHHHHhCCccHH
Confidence 99999999999999999999999888877643 689999999999865 599999999999999999999988755443
|
|
| >PRK14249 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-39 Score=355.45 Aligned_cols=218 Identities=30% Similarity=0.501 Sum_probs=184.1
Q ss_pred cEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCC-----CCeEEECCeecCCc--CH
Q 000984 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQ-----AGEVLIDGINLKEF--QL 455 (1198)
Q Consensus 383 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~-----~G~i~i~g~~~~~~--~~ 455 (1198)
.|+++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|. +|+|.++|.++... +.
T Consensus 4 ~l~~~~l~~~~~~---~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~ 80 (251)
T PRK14249 4 KIKIRGVNFFYHK---HQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLDV 80 (251)
T ss_pred eEEEEEEEEEECC---eeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEccccccCh
Confidence 5899999999963 46999999999999999999999999999999999999987 69999999998643 45
Q ss_pred HHHhcceEEEcCCCCCCcccHHHHHhcCCCC--C-CHH----HHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHH
Q 000984 456 QWIRKKIGLVSQEPVLFTGSIKDNIAYGKDD--A-TTE----EIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQK 528 (1198)
Q Consensus 456 ~~~r~~i~~v~Q~~~l~~~ti~~Ni~~~~~~--~-~~~----~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqk 528 (1198)
..+|+.++|++|+|.+|..|++||+.++... . ..+ .+.++++..++.+ ++.......+.+||||||
T Consensus 81 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~l~~~~~~~~~~LS~Gq~ 153 (251)
T PRK14249 81 VNLRKRVGMVFQQPNPFPKSIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWD-------EVKDNLHKSGLALSGGQQ 153 (251)
T ss_pred HHhhceEEEEecCCccCcCcHHHHHhhHHHhcCCChhhHHHHHHHHHHHHhCCch-------hhhhHhhCCcccCCHHHH
Confidence 5778899999999999999999999875321 1 111 1222222222222 233446777889999999
Q ss_pred HHHhHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhCCCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChhhH
Q 000984 529 QRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKL 607 (1198)
Q Consensus 529 qri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l 607 (1198)
||++||||++.+|+++||||||++||+.+...+.+.|+++.+++|+|++||+++.+.. ||+|++|++|++++.|+++++
T Consensus 154 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tilivsh~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 233 (251)
T PRK14249 154 QRLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQELKQNYTIAIVTHNMQQAARASDWTGFLLTGDLVEYGRTGEI 233 (251)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhCCEEEEEeCCeEEEeCCHHHH
Confidence 9999999999999999999999999999999999999887667999999999999876 899999999999999999998
Q ss_pred hcC
Q 000984 608 VED 610 (1198)
Q Consensus 608 ~~~ 610 (1198)
...
T Consensus 234 ~~~ 236 (251)
T PRK14249 234 FSR 236 (251)
T ss_pred HhC
Confidence 764
|
|
| >PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-39 Score=359.82 Aligned_cols=218 Identities=33% Similarity=0.588 Sum_probs=184.1
Q ss_pred EEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcC-HHHHhcce
Q 000984 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQ-LQWIRKKI 462 (1198)
Q Consensus 384 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~-~~~~r~~i 462 (1198)
++++|++++|+. ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+ ...+++.+
T Consensus 2 l~~~~l~~~~~~--~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i 79 (274)
T PRK13644 2 IRLENVSYSYPD--GTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRKLV 79 (274)
T ss_pred EEEEEEEEEcCC--CCceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEECCccccHHHHHhhe
Confidence 689999999963 245999999999999999999999999999999999999999999999999998765 45678899
Q ss_pred EEEcCCCC--CCcccHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhhc
Q 000984 463 GLVSQEPV--LFTGSIKDNIAYGKDD--ATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAIL 538 (1198)
Q Consensus 463 ~~v~Q~~~--l~~~ti~~Ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal~ 538 (1198)
+|++|+|. ++..|++|||.++... .+.++..+. +.+.++.+ |++.........||||||||++||||++
T Consensus 80 ~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~-----~~~~l~~~--gl~~~~~~~~~~LS~G~~qrv~laral~ 152 (274)
T PRK13644 80 GIVFQNPETQFVGRTVEEDLAFGPENLCLPPIEIRKR-----VDRALAEI--GLEKYRHRSPKTLSGGQGQCVALAGILT 152 (274)
T ss_pred EEEEEChhhhcccchHHHHHHhhHHHcCCCHHHHHHH-----HHHHHHHC--CCHHHhcCCcccCCHHHHHHHHHHHHHH
Confidence 99999985 5678999999875321 122222111 11223333 5555566677899999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh-CCCeEEEEecCcchhhccCEEEEEeCCEEEEecChhhHhcC
Q 000984 539 KDPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVED 610 (1198)
Q Consensus 539 ~~~~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~ 610 (1198)
.+|+++||||||++||+.+...+.+.++++. +++|+|++||+++.+..||+|++|++|++++.|+++++...
T Consensus 153 ~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~~tH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 225 (274)
T PRK13644 153 MEPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGKTIVYITHNLEELHDADRIIVMDRGKIVLEGEPENVLSD 225 (274)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHhhCCEEEEEECCEEEEECCHHHHhcC
Confidence 9999999999999999999999999998865 47899999999999988999999999999999999988654
|
|
| >PRK14245 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-39 Score=357.80 Aligned_cols=219 Identities=35% Similarity=0.520 Sum_probs=182.8
Q ss_pred cEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcc---CCC--CCCeEEECCeecCCc--CH
Q 000984 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERF---YDP--QAGEVLIDGINLKEF--QL 455 (1198)
Q Consensus 383 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~---~~~--~~G~i~i~g~~~~~~--~~ 455 (1198)
.|+++|+++.|+. +++|+|+||++++||+++|+||||||||||+++|.|+ ++| ++|+|.++|.++... +.
T Consensus 3 ~l~~~~~~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~ 79 (250)
T PRK14245 3 KIDARDVNFWYGD---FHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQV 79 (250)
T ss_pred EEEEEEEEEEECC---EeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEecccccccH
Confidence 4889999999963 4699999999999999999999999999999999997 454 589999999998754 34
Q ss_pred HHHhcceEEEcCCCCCCcccHHHHHhcCCCC--C-CH----HHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHH
Q 000984 456 QWIRKKIGLVSQEPVLFTGSIKDNIAYGKDD--A-TT----EEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQK 528 (1198)
Q Consensus 456 ~~~r~~i~~v~Q~~~l~~~ti~~Ni~~~~~~--~-~~----~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqk 528 (1198)
..+|++++|+||+|.+|..|++||+.++... . .. ++++++++.+++. +.+.+.....+.+||||||
T Consensus 80 ~~~~~~i~~v~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-------~~~~~~~~~~~~~LS~G~~ 152 (250)
T PRK14245 80 DELRKNVGMVFQRPNPFPKSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALW-------DEVKDKLKESAFALSGGQQ 152 (250)
T ss_pred HHHhhheEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCC-------cchhhhhhCCcccCCHHHH
Confidence 5678899999999999989999999875321 1 11 1223333333221 1223445677889999999
Q ss_pred HHHhHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhCCCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChhhH
Q 000984 529 QRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKL 607 (1198)
Q Consensus 529 qri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l 607 (1198)
||++||||++.+|+++||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+.. ||+|++|++|++++.|+++++
T Consensus 153 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~v~~l~~G~~~~~~~~~~~ 232 (250)
T PRK14245 153 QRLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHELKKDYTIVIVTHNMQQAARVSDKTAFFYMGEMVEYDDTKKI 232 (250)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEECCEEEEECCHHHH
Confidence 9999999999999999999999999999999999999988778999999999998854 999999999999999999999
Q ss_pred hcCC
Q 000984 608 VEDP 611 (1198)
Q Consensus 608 ~~~~ 611 (1198)
.+++
T Consensus 233 ~~~~ 236 (250)
T PRK14245 233 FTNP 236 (250)
T ss_pred hcCC
Confidence 7653
|
|
| >cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-39 Score=349.12 Aligned_cols=203 Identities=27% Similarity=0.508 Sum_probs=172.9
Q ss_pred EEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcceE
Q 000984 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIG 463 (1198)
Q Consensus 384 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~ 463 (1198)
|+++|++++|++ .++|+|+||++++| +++|+||||||||||+++|.|+++|++|+|.++|.++.+.+ ..+|++++
T Consensus 1 i~~~~~~~~~~~---~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~-~~~~~~i~ 75 (211)
T cd03264 1 LQLENLTKRYGK---KRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQP-QKLRRRIG 75 (211)
T ss_pred CEEEEEEEEECC---EEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCCccccch-HHHHhheE
Confidence 478999999963 36999999999999 99999999999999999999999999999999999988766 67788999
Q ss_pred EEcCCCCCCcc-cHHHHHhcCCC--CCC----HHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHh
Q 000984 464 LVSQEPVLFTG-SIKDNIAYGKD--DAT----TEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARA 536 (1198)
Q Consensus 464 ~v~Q~~~l~~~-ti~~Ni~~~~~--~~~----~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARa 536 (1198)
|++|+|.+|.+ |++||+.+... ..+ .+++.++++..++.+ .......+||||||||++||||
T Consensus 76 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LS~G~~qrv~la~a 144 (211)
T cd03264 76 YLPQEFGVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVLELVNLGD-----------RAKKKIGSLSGGMRRRVGIAQA 144 (211)
T ss_pred EecCCCcccccCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCHH-----------HHhCchhhCCHHHHHHHHHHHH
Confidence 99999999875 99999986321 111 123334444444332 2334556899999999999999
Q ss_pred hccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhCCCeEEEEecCcchhhc-cCEEEEEeCCEEEEec
Q 000984 537 ILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKG 602 (1198)
Q Consensus 537 l~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g 602 (1198)
++++|+++||||||++||+.+.+.+.+.++++.+++|+|++||+++.+.. ||++++|++|++++.|
T Consensus 145 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~g~i~~~g 211 (211)
T cd03264 145 LVGDPSILIVDEPTAGLDPEERIRFRNLLSELGEDRIVILSTHIVEDVESLCNQVAVLNKGKLVFEG 211 (211)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEecC
Confidence 99999999999999999999999999999988777999999999999864 9999999999998765
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-39 Score=363.64 Aligned_cols=223 Identities=28% Similarity=0.495 Sum_probs=182.6
Q ss_pred cccEEEEeEEEEcCCCC--CCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCC----c-
Q 000984 381 RGDIELRDVYFSYPARP--NEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKE----F- 453 (1198)
Q Consensus 381 ~g~i~~~~v~~~y~~~~--~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~----~- 453 (1198)
.+.|+++|++++|+++. ..++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. .
T Consensus 4 ~~~l~i~nl~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~ 83 (289)
T PRK13645 4 SKDIILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIK 83 (289)
T ss_pred cceEEEEEEEEEeCCCCccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEccccccccc
Confidence 35699999999996432 1359999999999999999999999999999999999999999999999998752 2
Q ss_pred CHHHHhcceEEEcCCC--CCCcccHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHHhCCCCcc-chhcCCCCCCChHHH
Q 000984 454 QLQWIRKKIGLVSQEP--VLFTGSIKDNIAYGKDD--ATTEEIRVATELANAAKFIDKLPQGID-TLVGEHGTQLSGGQK 528 (1198)
Q Consensus 454 ~~~~~r~~i~~v~Q~~--~l~~~ti~~Ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~-t~v~~~g~~lSgGqk 528 (1198)
+...+|++++|++|+| .+|..|++||+.++... ...++..+.+ .+.++.+ |+. .........||||||
T Consensus 84 ~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~-----~~ll~~~--~L~~~~~~~~~~~LS~Gq~ 156 (289)
T PRK13645 84 EVKRLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNLGENKQEAYKKV-----PELLKLV--QLPEDYVKRSPFELSGGQK 156 (289)
T ss_pred cHHHHhccEEEEEeCcchhhhhhHHHHHHHHHHHHcCCCHHHHHHHH-----HHHHHHc--CCChhHhcCChhhCCHHHH
Confidence 3566788999999998 46788999999875321 2222222111 1222222 332 234566788999999
Q ss_pred HHHhHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhC--CCeEEEEecCcchhh-ccCEEEEEeCCEEEEecChh
Q 000984 529 QRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKGTHS 605 (1198)
Q Consensus 529 qri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~-~~d~i~~l~~G~i~~~g~~~ 605 (1198)
||++||||++.+|++|||||||++||+.+.+.+.+.|+++.+ ++|+|++||+++.+. .||+|++|++|++++.|+++
T Consensus 157 qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~g~~~ 236 (289)
T PRK13645 157 RRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMDQVLRIADEVIVMHEGKVISIGSPF 236 (289)
T ss_pred HHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 999999999999999999999999999999999999988753 789999999999875 49999999999999999998
Q ss_pred hHhcC
Q 000984 606 KLVED 610 (1198)
Q Consensus 606 ~l~~~ 610 (1198)
++...
T Consensus 237 ~~~~~ 241 (289)
T PRK13645 237 EIFSN 241 (289)
T ss_pred HHhcC
Confidence 88654
|
|
| >PRK14239 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-39 Score=356.87 Aligned_cols=219 Identities=29% Similarity=0.462 Sum_probs=182.3
Q ss_pred cEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccC--CC---CCCeEEECCeecCCc--CH
Q 000984 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFY--DP---QAGEVLIDGINLKEF--QL 455 (1198)
Q Consensus 383 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~--~~---~~G~i~i~g~~~~~~--~~ 455 (1198)
.++++|++++|++ +++|+|+||++++||+++|+||||||||||+++|+|++ .| ++|+|.++|.++... +.
T Consensus 5 ~l~~~~l~~~~~~---~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~~~ 81 (252)
T PRK14239 5 ILQVSDLSVYYNK---KKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDT 81 (252)
T ss_pred eEEEEeeEEEECC---eeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcccch
Confidence 4899999999963 46999999999999999999999999999999999985 36 489999999998643 34
Q ss_pred HHHhcceEEEcCCCCCCcccHHHHHhcCCC---CCCH----HHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHH
Q 000984 456 QWIRKKIGLVSQEPVLFTGSIKDNIAYGKD---DATT----EEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQK 528 (1198)
Q Consensus 456 ~~~r~~i~~v~Q~~~l~~~ti~~Ni~~~~~---~~~~----~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqk 528 (1198)
..+|+.++|+||+|.+|+.|++||+.++.. .... +++..+++.+++.+ ++.+..+....+||||||
T Consensus 82 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~~~~~~~~~~~~LS~G~~ 154 (252)
T PRK14239 82 VDLRKEIGMVFQQPNPFPMSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWD-------EVKDRLHDSALGLSGGQQ 154 (252)
T ss_pred HhhhhcEEEEecCCccCcCcHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCch-------hHHHHHhcCcccCCHHHH
Confidence 567889999999999999999999986521 1111 12222333332221 223445677789999999
Q ss_pred HHHhHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhCCCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChhhH
Q 000984 529 QRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKL 607 (1198)
Q Consensus 529 qri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l 607 (1198)
||++||||++++|++|||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+.. ||+|++|++|++++.|+++++
T Consensus 155 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 234 (252)
T PRK14239 155 QRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKDDYTMLLVTRSMQQASRISDRTGFFLDGDLIEYNDTKQM 234 (252)
T ss_pred HHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHhhCCeEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999988777999999999998764 999999999999999999998
Q ss_pred hcCC
Q 000984 608 VEDP 611 (1198)
Q Consensus 608 ~~~~ 611 (1198)
.+.+
T Consensus 235 ~~~~ 238 (252)
T PRK14239 235 FMNP 238 (252)
T ss_pred HhCC
Confidence 7653
|
|
| >PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-39 Score=358.88 Aligned_cols=220 Identities=27% Similarity=0.490 Sum_probs=184.4
Q ss_pred cEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcce
Q 000984 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKI 462 (1198)
Q Consensus 383 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i 462 (1198)
.|+++|++++|++. .+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.+...+|+++
T Consensus 7 ~l~i~~l~~~~~~~-~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i 85 (269)
T PRK13648 7 IIVFKNVSFQYQSD-ASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKLRKHI 85 (269)
T ss_pred eEEEEEEEEEcCCC-CCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhhe
Confidence 48999999999743 24699999999999999999999999999999999999999999999999999888888889999
Q ss_pred EEEcCCCC--CCcccHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhhc
Q 000984 463 GLVSQEPV--LFTGSIKDNIAYGKDD--ATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAIL 538 (1198)
Q Consensus 463 ~~v~Q~~~--l~~~ti~~Ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal~ 538 (1198)
+|++|+|. ++..|+++|+.++... ...++..+. +.+.++.+ |+.........+||||||||++||||++
T Consensus 86 ~~v~q~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~-----~~~~l~~~--~l~~~~~~~~~~LS~G~~qrl~laral~ 158 (269)
T PRK13648 86 GIVFQNPDNQFVGSIVKYDVAFGLENHAVPYDEMHRR-----VSEALKQV--DMLERADYEPNALSGGQKQRVAIAGVLA 158 (269)
T ss_pred eEEEeChHHhcccccHHHHHHhhHHhcCCCHHHHHHH-----HHHHHHHc--CCchhhhCCcccCCHHHHHHHHHHHHHH
Confidence 99999995 4467899999876322 122222111 11122222 3333445566789999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhC--CCeEEEEecCcchhhccCEEEEEeCCEEEEecChhhHhcC
Q 000984 539 KDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVED 610 (1198)
Q Consensus 539 ~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~ 610 (1198)
.+|+++||||||++||+.+.+.+.+.++++.+ ++|+|++||+++.+..||+|++|++|++++.|+++++...
T Consensus 159 ~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 232 (269)
T PRK13648 159 LNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLSEAMEADHVIVMNKGTVYKEGTPTEIFDH 232 (269)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCchHHhcCCEEEEEECCEEEEecCHHHHhcC
Confidence 99999999999999999999999999988753 6899999999998888999999999999999999988654
|
|
| >PRK13633 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-39 Score=361.47 Aligned_cols=217 Identities=26% Similarity=0.488 Sum_probs=184.2
Q ss_pred cEEEEeEEEEcCCCC---CCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcC-HHHH
Q 000984 383 DIELRDVYFSYPARP---NEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQ-LQWI 458 (1198)
Q Consensus 383 ~i~~~~v~~~y~~~~---~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~-~~~~ 458 (1198)
.++++|++++|+... .+++|+|+||+|++||+++|+|+||||||||+++|.|+++|++|+|.+||.++.+.. ...+
T Consensus 4 ~l~~~~l~~~~~~~~~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~ 83 (280)
T PRK13633 4 MIKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENLWDI 83 (280)
T ss_pred eEEEeeeEEEcCCCCCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeccccccHHHH
Confidence 489999999997421 246999999999999999999999999999999999999999999999999987653 3567
Q ss_pred hcceEEEcCCCC--CCcccHHHHHhcCCCC--CCH----HHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHH
Q 000984 459 RKKIGLVSQEPV--LFTGSIKDNIAYGKDD--ATT----EEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQR 530 (1198)
Q Consensus 459 r~~i~~v~Q~~~--l~~~ti~~Ni~~~~~~--~~~----~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqr 530 (1198)
|++++|++|+|. ++..|+.+|+.|+... .+. +++.++++.+ |+.........+||||||||
T Consensus 84 ~~~i~~v~q~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~-----------gL~~~~~~~~~~LS~G~~qr 152 (280)
T PRK13633 84 RNKAGMVFQNPDNQIVATIVEEDVAFGPENLGIPPEEIRERVDESLKKV-----------GMYEYRRHAPHLLSGGQKQR 152 (280)
T ss_pred hhheEEEecChhhhhccccHHHHHHhhHhhcCCCHHHHHHHHHHHHHHC-----------CCHhHhhCCcccCCHHHHHH
Confidence 889999999984 6777999999886321 122 2233344444 44444455567899999999
Q ss_pred HhHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhC--CCeEEEEecCcchhhccCEEEEEeCCEEEEecChhhHh
Q 000984 531 IAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLV 608 (1198)
Q Consensus 531 i~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~ 608 (1198)
++||||++++|+++||||||++||+.+...+.+.++++.+ ++|+|++||+++.+..||++++|++|++++.|+++++.
T Consensus 153 v~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 232 (280)
T PRK13633 153 VAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYMEEAVEADRIIVMDSGKVVMEGTPKEIF 232 (280)
T ss_pred HHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecChHHHhcCCEEEEEECCEEEEecCHHHHh
Confidence 9999999999999999999999999999999999988753 78999999999998889999999999999999999987
Q ss_pred cC
Q 000984 609 ED 610 (1198)
Q Consensus 609 ~~ 610 (1198)
..
T Consensus 233 ~~ 234 (280)
T PRK13633 233 KE 234 (280)
T ss_pred cC
Confidence 54
|
|
| >PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-39 Score=352.29 Aligned_cols=217 Identities=31% Similarity=0.551 Sum_probs=183.9
Q ss_pred EEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCc--CHHHHhcc
Q 000984 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEF--QLQWIRKK 461 (1198)
Q Consensus 384 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~--~~~~~r~~ 461 (1198)
++++|++++|++ +++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.++... +...+|++
T Consensus 2 l~~~~l~~~~~~---~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 78 (240)
T PRK09493 2 IEFKNVSKHFGP---TQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERLIRQE 78 (240)
T ss_pred EEEEeEEEEECC---eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCChhHHHHhhc
Confidence 689999999963 4699999999999999999999999999999999999999999999999998764 34567889
Q ss_pred eEEEcCCCCCCc-ccHHHHHhcCCC---CCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhh
Q 000984 462 IGLVSQEPVLFT-GSIKDNIAYGKD---DATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAI 537 (1198)
Q Consensus 462 i~~v~Q~~~l~~-~ti~~Ni~~~~~---~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal 537 (1198)
++|++|++.++. .|+++|+.++.. ..+..+..+ .+.+.++.+ |++.........||||||||++||||+
T Consensus 79 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~-----~~~~~l~~~--gl~~~~~~~~~~LS~G~~qrv~la~al 151 (240)
T PRK09493 79 AGMVFQQFYLFPHLTALENVMFGPLRVRGASKEEAEK-----QARELLAKV--GLAERAHHYPSELSGGQQQRVAIARAL 151 (240)
T ss_pred eEEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHH-----HHHHHHHHc--CChHHHhcChhhcCHHHHHHHHHHHHH
Confidence 999999998885 699999987531 112222111 122334444 666666777789999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh-CCCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChhhHhcC
Q 000984 538 LKDPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVED 610 (1198)
Q Consensus 538 ~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 610 (1198)
+++|+++||||||++||+++...+.+.++++. +++|+|++||+++.+.. ||+|++|++|++++.|+++++.+.
T Consensus 152 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 226 (240)
T PRK09493 152 AVKPKLMLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIGFAEKVASRLIFIDKGRIAEDGDPQVLIKN 226 (240)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeeCCHHHHhcC
Confidence 99999999999999999999999999998875 47899999999999865 999999999999999999988754
|
|
| >TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-39 Score=356.35 Aligned_cols=219 Identities=32% Similarity=0.541 Sum_probs=183.9
Q ss_pred EEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcC---------
Q 000984 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQ--------- 454 (1198)
Q Consensus 384 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~--------- 454 (1198)
|+++|++++|+. .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+++
T Consensus 1 i~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~ 77 (252)
T TIGR03005 1 VRFSDVTKRFGI---LTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPLVPA 77 (252)
T ss_pred CEEEEEEEEeCC---eeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccccccccccccc
Confidence 578999999963 46999999999999999999999999999999999999999999999999987543
Q ss_pred ----HHHHhcceEEEcCCCCCCc-ccHHHHHhcCCC---CCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChH
Q 000984 455 ----LQWIRKKIGLVSQEPVLFT-GSIKDNIAYGKD---DATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGG 526 (1198)
Q Consensus 455 ----~~~~r~~i~~v~Q~~~l~~-~ti~~Ni~~~~~---~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgG 526 (1198)
...+|++++|++|++.+|. .|++||+.++.. ....++..+ .+.+.++.+ |++.........||||
T Consensus 78 ~~~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~-----~~~~~l~~~--gl~~~~~~~~~~LS~G 150 (252)
T TIGR03005 78 DEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEK-----RAMELLDMV--GLADKADHMPAQLSGG 150 (252)
T ss_pred chhHHHHHhhCeEEEecCcccCCCCcHHHHHHHHHHHhcCCCHHHHHH-----HHHHHHHHc--CChhHhhcChhhcCHH
Confidence 2456889999999999884 799999987421 112221111 122344444 5555666777899999
Q ss_pred HHHHHhHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhC--CCeEEEEecCcchhh-ccCEEEEEeCCEEEEecC
Q 000984 527 QKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKGT 603 (1198)
Q Consensus 527 qkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~-~~d~i~~l~~G~i~~~g~ 603 (1198)
||||++||||++++|+++||||||++||+.+...+.+.++++.+ ++|+|++||+++.+. .||++++|++|++++.|+
T Consensus 151 ~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~ 230 (252)
T TIGR03005 151 QQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMGFAREFADRVCFFDKGRIVEQGK 230 (252)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999999999999988753 789999999999985 599999999999999999
Q ss_pred hhhHhcCCC
Q 000984 604 HSKLVEDPE 612 (1198)
Q Consensus 604 ~~~l~~~~~ 612 (1198)
++++.+.+.
T Consensus 231 ~~~~~~~~~ 239 (252)
T TIGR03005 231 PDEIFRQPK 239 (252)
T ss_pred HHHHhcCCC
Confidence 999876543
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. |
| >PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-39 Score=359.04 Aligned_cols=213 Identities=28% Similarity=0.472 Sum_probs=182.7
Q ss_pred cEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcce
Q 000984 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKI 462 (1198)
Q Consensus 383 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i 462 (1198)
.++++|++++|++ +++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.++.+.+...+|+.+
T Consensus 11 ~l~i~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i 87 (265)
T PRK10575 11 TFALRNVSFRVPG---RTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFARKV 87 (265)
T ss_pred eEEEeeEEEEECC---EEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEehhhCCHHHHhhhe
Confidence 5899999999963 4699999999999999999999999999999999999999999999999999888888888899
Q ss_pred EEEcCCCCCCc-ccHHHHHhcCCCC-------C---CHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHH
Q 000984 463 GLVSQEPVLFT-GSIKDNIAYGKDD-------A---TTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRI 531 (1198)
Q Consensus 463 ~~v~Q~~~l~~-~ti~~Ni~~~~~~-------~---~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri 531 (1198)
+|++|++.++. .|++||+.++... . .++++..+++.+++.+ .......+||||||||+
T Consensus 88 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LSgG~~qrv 156 (265)
T PRK10575 88 AYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKP-----------LAHRLVDSLSGGERQRA 156 (265)
T ss_pred EEeccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHH-----------HhcCCcccCCHHHHHHH
Confidence 99999987665 5999999875311 0 1223444444444433 33444568999999999
Q ss_pred hHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhC--CCeEEEEecCcchhh-ccCEEEEEeCCEEEEecChhhHh
Q 000984 532 AIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKGTHSKLV 608 (1198)
Q Consensus 532 ~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~ 608 (1198)
+||||++.+|++|||||||++||+.+.+.+.+.|.++.+ ++|+|++||+++.+. .||+|++|++|++++.|+++++.
T Consensus 157 ~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~~~i~~~~d~i~~l~~G~i~~~~~~~~~~ 236 (265)
T PRK10575 157 WIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDINMAARYCDYLVALRGGEMIAQGTPAELM 236 (265)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCHHHhc
Confidence 999999999999999999999999999999999988753 689999999999986 59999999999999999998875
Q ss_pred c
Q 000984 609 E 609 (1198)
Q Consensus 609 ~ 609 (1198)
.
T Consensus 237 ~ 237 (265)
T PRK10575 237 R 237 (265)
T ss_pred C
Confidence 4
|
|
| >TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-39 Score=350.70 Aligned_cols=209 Identities=29% Similarity=0.523 Sum_probs=173.8
Q ss_pred EEEEeEEEEcCCCC-CCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHH---Hh
Q 000984 384 IELRDVYFSYPARP-NEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQW---IR 459 (1198)
Q Consensus 384 i~~~~v~~~y~~~~-~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~---~r 459 (1198)
|+++|++++|+... ..++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.+... +|
T Consensus 2 l~~~~v~~~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (221)
T TIGR02211 2 LKCENLGKRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAKLR 81 (221)
T ss_pred EEEEeeeEEccCCCcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcCHhHHHHHH
Confidence 68999999996421 246999999999999999999999999999999999999999999999999998876544 33
Q ss_pred -cceEEEcCCCCCCc-ccHHHHHhcCCC--CCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHH
Q 000984 460 -KKIGLVSQEPVLFT-GSIKDNIAYGKD--DATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIAR 535 (1198)
Q Consensus 460 -~~i~~v~Q~~~l~~-~ti~~Ni~~~~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lAR 535 (1198)
++++|++|+|.+|. .|++||+.++.. .....+..+ .+.+.++.+ |++.........||||||||++|||
T Consensus 82 ~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~lar 154 (221)
T TIGR02211 82 NKKLGFIYQFHHLLPDFTALENVAMPLLIGKKSVKEAKE-----RAYEMLEKV--GLEHRINHRPSELSGGERQRVAIAR 154 (221)
T ss_pred HhcEEEEecccccCCCCcHHHHHHHHHHhcCCCHHHHHH-----HHHHHHHHc--CChhhhhCChhhCCHHHHHHHHHHH
Confidence 67999999999885 699999986421 112111111 112333443 5655566677889999999999999
Q ss_pred hhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhC--CCeEEEEecCcchhhccCEEEEEeCCEEE
Q 000984 536 AILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRNADMIAVIHRGKIV 599 (1198)
Q Consensus 536 al~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~~~d~i~~l~~G~i~ 599 (1198)
|++++|++|||||||++||+++.+.+.+.|+++.+ ++|+|++||+++.+..+|+|++|++|+++
T Consensus 155 al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~d~v~~l~~G~i~ 220 (221)
T TIGR02211 155 ALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLELAKKLDRVLEMKDGQLF 220 (221)
T ss_pred HHhCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhhcCEEEEEeCCEec
Confidence 99999999999999999999999999999988753 68999999999999889999999999985
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina. |
| >TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-39 Score=352.44 Aligned_cols=214 Identities=26% Similarity=0.494 Sum_probs=179.0
Q ss_pred EEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHH-Hhcce
Q 000984 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQW-IRKKI 462 (1198)
Q Consensus 384 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~-~r~~i 462 (1198)
|+++|++++|+. .++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.++...+... .++++
T Consensus 1 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i 77 (230)
T TIGR03410 1 LEVSNLNVYYGQ---SHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERARAGI 77 (230)
T ss_pred CEEEeEEEEeCC---eEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHHhCe
Confidence 478999999963 46999999999999999999999999999999999999999999999999998876654 46789
Q ss_pred EEEcCCCCCCcc-cHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhhccCC
Q 000984 463 GLVSQEPVLFTG-SIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDP 541 (1198)
Q Consensus 463 ~~v~Q~~~l~~~-ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal~~~~ 541 (1198)
+|++|++.+|.. |+++|+.++........ .+. ..+.++.+ ++++........+||||||||++||||++++|
T Consensus 78 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~-~~~-----~~~~l~~~-~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p 150 (230)
T TIGR03410 78 AYVPQGREIFPRLTVEENLLTGLAALPRRS-RKI-----PDEIYELF-PVLKEMLGRRGGDLSGGQQQQLAIARALVTRP 150 (230)
T ss_pred EEeccCCcccCCCcHHHHHHHHHHhcCcch-HHH-----HHHHHHHH-HhHHHHhhCChhhCCHHHHHHHHHHHHHhcCC
Confidence 999999999875 99999987543221110 000 01112111 12334456667789999999999999999999
Q ss_pred CEEEEeCCCCCCCHHhHHHHHHHHHHHhC--CCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChhhH
Q 000984 542 RILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKL 607 (1198)
Q Consensus 542 ~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l 607 (1198)
+++||||||++||+.+.+.+.+.|.++.+ ++|+|++||+++.+.. ||+|+++++|++++.|+++++
T Consensus 151 ~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~g~i~~~~~~~~~ 219 (230)
T TIGR03410 151 KLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLDFARELADRYYVMERGRVVASGAGDEL 219 (230)
T ss_pred CEEEecCCcccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHc
Confidence 99999999999999999999999988764 6899999999999885 999999999999999999887
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >PRK14238 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-39 Score=357.95 Aligned_cols=219 Identities=27% Similarity=0.475 Sum_probs=184.1
Q ss_pred cEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCC-----CCCCeEEECCeecCC--cCH
Q 000984 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYD-----PQAGEVLIDGINLKE--FQL 455 (1198)
Q Consensus 383 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~-----~~~G~i~i~g~~~~~--~~~ 455 (1198)
.++++|++++|+. .++|+|+||+|++||+++|+|+||||||||+++|.|+++ |++|+|.++|.++.. .+.
T Consensus 24 ~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~ 100 (271)
T PRK14238 24 VFDTQNLNLWYGE---DHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYSV 100 (271)
T ss_pred EEEEeeeEEEECC---cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEcccccccH
Confidence 5999999999963 359999999999999999999999999999999999987 699999999999853 345
Q ss_pred HHHhcceEEEcCCCCCCcccHHHHHhcCCC--CCCHHH-----HHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHH
Q 000984 456 QWIRKKIGLVSQEPVLFTGSIKDNIAYGKD--DATTEE-----IRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQK 528 (1198)
Q Consensus 456 ~~~r~~i~~v~Q~~~l~~~ti~~Ni~~~~~--~~~~~~-----~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqk 528 (1198)
..++++++|++|+|.+|..|++||+.++.. ...+++ +.++++..++ .+++.......+..||||||
T Consensus 101 ~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~~l~~~~~~~~~~LSgGe~ 173 (271)
T PRK14238 101 EELRTNVGMVFQKPNPFPKSIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAI-------WDELKDRLHDNAYGLSGGQQ 173 (271)
T ss_pred HHHhhhEEEEecCCccccccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCC-------cchHHHHHhcCcccCCHHHH
Confidence 667889999999999998999999986531 111111 1112222111 12344456677889999999
Q ss_pred HHHhHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhCCCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChhhH
Q 000984 529 QRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKL 607 (1198)
Q Consensus 529 qri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l 607 (1198)
||++|||||+++|++|||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+.. ||++++|++|++++.|+++++
T Consensus 174 qrv~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~~g~~~~~ 253 (271)
T PRK14238 174 QRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKKDYSIIIVTHNMQQAARISDKTAFFLNGYVNEYDDTDKI 253 (271)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHcCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999988778999999999999865 999999999999999999998
Q ss_pred hcCC
Q 000984 608 VEDP 611 (1198)
Q Consensus 608 ~~~~ 611 (1198)
..++
T Consensus 254 ~~~~ 257 (271)
T PRK14238 254 FSNP 257 (271)
T ss_pred HcCC
Confidence 7653
|
|
| >TIGR02769 nickel_nikE nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-39 Score=358.33 Aligned_cols=220 Identities=31% Similarity=0.481 Sum_probs=182.1
Q ss_pred EEEEeEEEEcCCC------CCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHH
Q 000984 384 IELRDVYFSYPAR------PNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQW 457 (1198)
Q Consensus 384 i~~~~v~~~y~~~------~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~ 457 (1198)
|+++|++++|+.. .++++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++...+...
T Consensus 3 l~~~~l~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~ 82 (265)
T TIGR02769 3 LEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRKQ 82 (265)
T ss_pred EEEEeEEEEeccCccccccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEccccCHHH
Confidence 7899999999632 1357999999999999999999999999999999999999999999999999998776543
Q ss_pred ---HhcceEEEcCCCC--CC-cccHHHHHhcCCC---CCCHHHHHHHHHHhcHHHHHHhCCCCcc-chhcCCCCCCChHH
Q 000984 458 ---IRKKIGLVSQEPV--LF-TGSIKDNIAYGKD---DATTEEIRVATELANAAKFIDKLPQGID-TLVGEHGTQLSGGQ 527 (1198)
Q Consensus 458 ---~r~~i~~v~Q~~~--l~-~~ti~~Ni~~~~~---~~~~~~~~~~~~~~~~~~~i~~l~~g~~-t~v~~~g~~lSgGq 527 (1198)
+|++++|++|+|. ++ ..|++||+.++.. ....++.. ..+.+.++.+ |++ .........|||||
T Consensus 83 ~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~-----~~~~~~l~~~--gl~~~~~~~~~~~LSgGe 155 (265)
T TIGR02769 83 RRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLDESEQK-----ARIAELLDMV--GLRSEDADKLPRQLSGGQ 155 (265)
T ss_pred HHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHHhcCCCHHHHH-----HHHHHHHHHc--CCChhhhhCChhhCCHHH
Confidence 5778999999983 44 4799999975321 11111111 1122334444 554 34566778999999
Q ss_pred HHHHhHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhC--CCeEEEEecCcchhhc-cCEEEEEeCCEEEEecCh
Q 000984 528 KQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTH 604 (1198)
Q Consensus 528 kqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~ 604 (1198)
|||++||||++++|++|||||||++||+.+.+.+.+.++++.+ ++|+|++||+++.+.. ||++++|++|++++.|++
T Consensus 156 ~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~~ 235 (265)
T TIGR02769 156 LQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLRLVQSFCQRVAVMDKGQIVEECDV 235 (265)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHHhcEEEEEeCCEEEEECCH
Confidence 9999999999999999999999999999999999999988754 7899999999999874 999999999999999999
Q ss_pred hhHhcC
Q 000984 605 SKLVED 610 (1198)
Q Consensus 605 ~~l~~~ 610 (1198)
+++...
T Consensus 236 ~~~~~~ 241 (265)
T TIGR02769 236 AQLLSF 241 (265)
T ss_pred HHHcCC
Confidence 999864
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. |
| >PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-38 Score=353.52 Aligned_cols=219 Identities=33% Similarity=0.565 Sum_probs=183.5
Q ss_pred cEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcC--------
Q 000984 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQ-------- 454 (1198)
Q Consensus 383 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~-------- 454 (1198)
.++++|++++|++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 79 (250)
T PRK11264 3 AIEVKNLVKKFHG---QTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQKGL 79 (250)
T ss_pred cEEEeceEEEECC---eeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccccccchhhH
Confidence 3889999999963 35999999999999999999999999999999999999999999999999986542
Q ss_pred HHHHhcceEEEcCCCCCCc-ccHHHHHhcCC---CCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHH
Q 000984 455 LQWIRKKIGLVSQEPVLFT-GSIKDNIAYGK---DDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQR 530 (1198)
Q Consensus 455 ~~~~r~~i~~v~Q~~~l~~-~ti~~Ni~~~~---~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqr 530 (1198)
...+|++++|++|+|.+|. .|++||+.++. .....++..+. +.+.++.+ |++........+||||||||
T Consensus 80 ~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~-----~~~~l~~~--gl~~~~~~~~~~LS~Gq~qr 152 (250)
T PRK11264 80 IRQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATAR-----ARELLAKV--GLAGKETSYPRRLSGGQQQR 152 (250)
T ss_pred HHHhhhhEEEEecCcccCCCCCHHHHHHHHHHHhcCCCHHHHHHH-----HHHHHHHc--CCcchhhCChhhCChHHHHH
Confidence 3456789999999999885 79999998642 11122211111 12334444 55555667778999999999
Q ss_pred HhHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhC-CCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChhhHh
Q 000984 531 IAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMV-NRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLV 608 (1198)
Q Consensus 531 i~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~-~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~ 608 (1198)
++||||++.+|++|||||||++||+.+.+.+.+.++++.+ ++|+|++||+++.+.. ||+|++|++|++++.|+++++.
T Consensus 153 v~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 232 (250)
T PRK11264 153 VAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMSFARDVADRAIFMDQGRIVEQGPAKALF 232 (250)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHHh
Confidence 9999999999999999999999999999999999988754 7899999999999865 9999999999999999999987
Q ss_pred cCC
Q 000984 609 EDP 611 (1198)
Q Consensus 609 ~~~ 611 (1198)
+.+
T Consensus 233 ~~~ 235 (250)
T PRK11264 233 ADP 235 (250)
T ss_pred cCC
Confidence 643
|
|
| >PRK14256 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-39 Score=355.23 Aligned_cols=221 Identities=29% Similarity=0.478 Sum_probs=183.9
Q ss_pred ccEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCC--C---CCCeEEECCeecCCc--C
Q 000984 382 GDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYD--P---QAGEVLIDGINLKEF--Q 454 (1198)
Q Consensus 382 g~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~--~---~~G~i~i~g~~~~~~--~ 454 (1198)
+.|+++|++++|+. +++|+|+||+|++||+++|+|+||||||||+++|.|+++ | ++|+|.++|.++... +
T Consensus 3 ~~l~~~nl~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~ 79 (252)
T PRK14256 3 NKVKLEQLNVHFGK---NHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVD 79 (252)
T ss_pred cEEEEEEEEEEeCC---eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccCC
Confidence 56999999999963 469999999999999999999999999999999999986 3 589999999998643 4
Q ss_pred HHHHhcceEEEcCCCCCCc-ccHHHHHhcCCCC---CCH----HHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChH
Q 000984 455 LQWIRKKIGLVSQEPVLFT-GSIKDNIAYGKDD---ATT----EEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGG 526 (1198)
Q Consensus 455 ~~~~r~~i~~v~Q~~~l~~-~ti~~Ni~~~~~~---~~~----~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgG 526 (1198)
...+|++++|++|++.+|. .|++||+.++... .+. +++.++++..++.+.+ ....+....+||||
T Consensus 80 ~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LS~G 152 (252)
T PRK14256 80 PVSIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEV-------KDRLKSNAMELSGG 152 (252)
T ss_pred hHHhhccEEEEecCCCCCCcCcHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhh-------hHHhhCCcCcCCHH
Confidence 5567889999999999887 6999999864211 111 2223333333332211 22345667889999
Q ss_pred HHHHHhHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhCCCeEEEEecCcchhh-ccCEEEEEeCCEEEEecChh
Q 000984 527 QKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKGTHS 605 (1198)
Q Consensus 527 qkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~-~~d~i~~l~~G~i~~~g~~~ 605 (1198)
||||++||||++.+|+++||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+. .||++++|++|++++.|+++
T Consensus 153 ~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~ 232 (252)
T PRK14256 153 QQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKEKYTIIIVTHNMQQAARVSDYTAFFYMGDLVECGETK 232 (252)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCcEEEEECCHHHHHhhCCEEEEEECCEEEEeCCHH
Confidence 99999999999999999999999999999999999999998877889999999999986 49999999999999999999
Q ss_pred hHhcCCC
Q 000984 606 KLVEDPE 612 (1198)
Q Consensus 606 ~l~~~~~ 612 (1198)
++...+.
T Consensus 233 ~~~~~~~ 239 (252)
T PRK14256 233 KIFTTPE 239 (252)
T ss_pred HHHhCCC
Confidence 9876543
|
|
| >PRK14244 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-39 Score=357.90 Aligned_cols=219 Identities=32% Similarity=0.530 Sum_probs=181.6
Q ss_pred EEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCC-----CCCCeEEECCeecCCcC--HH
Q 000984 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYD-----PQAGEVLIDGINLKEFQ--LQ 456 (1198)
Q Consensus 384 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~-----~~~G~i~i~g~~~~~~~--~~ 456 (1198)
-+++|++++|+. +++|+|+||+|++||+++|+|+||||||||+++|+|+++ |.+|+|.++|.++.+.+ ..
T Consensus 6 ~~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 82 (251)
T PRK14244 6 ASVKNLNLWYGS---KQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVV 82 (251)
T ss_pred EEeeeEEEEECC---eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccchH
Confidence 368999999963 469999999999999999999999999999999999986 46999999999886543 34
Q ss_pred HHhcceEEEcCCCCCCcccHHHHHhcCCC--CC--CH----HHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHH
Q 000984 457 WIRKKIGLVSQEPVLFTGSIKDNIAYGKD--DA--TT----EEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQK 528 (1198)
Q Consensus 457 ~~r~~i~~v~Q~~~l~~~ti~~Ni~~~~~--~~--~~----~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqk 528 (1198)
.+|++++|++|++.+|.+|++||+.++.. .. .. +++.++++..++.++ +.+.++..+.+||||||
T Consensus 83 ~~~~~i~~v~q~~~~~~~tv~~ni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-------~~~~~~~~~~~LS~Gq~ 155 (251)
T PRK14244 83 LLRAKVGMVFQKPNPFPKSIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEE-------LGDRLKDSAFELSGGQQ 155 (251)
T ss_pred HHhhhEEEEecCcccccCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCch-------hhhHhhcChhhCCHHHH
Confidence 57889999999999999999999987521 11 11 122233333322111 12345667789999999
Q ss_pred HHHhHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhCCCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChhhH
Q 000984 529 QRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKL 607 (1198)
Q Consensus 529 qri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l 607 (1198)
||++||||++++|+++||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+.. ||+|++|++|++++.|+++++
T Consensus 156 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 235 (251)
T PRK14244 156 QRLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQELKKNFTIIVVTHSMKQAKKVSDRVAFFQSGRIVEYNTTQEI 235 (251)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhcCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999988778999999999999865 999999999999999999998
Q ss_pred hcCCC
Q 000984 608 VEDPE 612 (1198)
Q Consensus 608 ~~~~~ 612 (1198)
.+.+.
T Consensus 236 ~~~~~ 240 (251)
T PRK14244 236 FKNPQ 240 (251)
T ss_pred hcCCC
Confidence 76543
|
|
| >PRK14261 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-39 Score=355.42 Aligned_cols=219 Identities=28% Similarity=0.484 Sum_probs=184.4
Q ss_pred cEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCC-----CCCeEEECCeecCCc--CH
Q 000984 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDP-----QAGEVLIDGINLKEF--QL 455 (1198)
Q Consensus 383 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~-----~~G~i~i~g~~~~~~--~~ 455 (1198)
.|+++|++++|++ +++|+|+||++++||+++|+||||||||||+++|+|+.+| ++|+|.++|.++... +.
T Consensus 6 ~i~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~ 82 (253)
T PRK14261 6 ILSTKNLNLWYGE---KHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGADV 82 (253)
T ss_pred eEEEeeeEEEECC---eeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccccccch
Confidence 4899999999963 4699999999999999999999999999999999998763 489999999998765 45
Q ss_pred HHHhcceEEEcCCCCCCcccHHHHHhcCCCCC---CH----HHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHH
Q 000984 456 QWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDA---TT----EEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQK 528 (1198)
Q Consensus 456 ~~~r~~i~~v~Q~~~l~~~ti~~Ni~~~~~~~---~~----~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqk 528 (1198)
...|+.++|++|+|.+|..|++||+.++.... .. +++.++++..++ .+++.+..++.+.+||||||
T Consensus 83 ~~~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l-------~~~l~~~~~~~~~~LS~G~~ 155 (253)
T PRK14261 83 VALRRKIGMVFQRPNPFPKSIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAAL-------WDEVKDRLHDSALSLSGGQQ 155 (253)
T ss_pred hhhhceEEEEecCCccCcccHHHHHHhhHHhcCCCCHHHHHHHHHHHHHHhcC-------chhhHHHhhcChhhCCHHHH
Confidence 66788999999999999999999999753211 11 122222222222 22334556778889999999
Q ss_pred HHHhHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhCCCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChhhH
Q 000984 529 QRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKL 607 (1198)
Q Consensus 529 qri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l 607 (1198)
||++||||++.+|+++||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+.. ||++++|++|++++.|+++++
T Consensus 156 qrv~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~tvii~sh~~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 235 (253)
T PRK14261 156 QRLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKKEYTVIIVTHNMQQAARVSDYTGFMYLGKLIEFDKTTQI 235 (253)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhhCceEEEEEcCHHHHHhhCCEEEEEECCEEEEcCCHHHH
Confidence 9999999999999999999999999999999999999988777999999999999864 999999999999999999998
Q ss_pred hcCC
Q 000984 608 VEDP 611 (1198)
Q Consensus 608 ~~~~ 611 (1198)
..++
T Consensus 236 ~~~~ 239 (253)
T PRK14261 236 FENP 239 (253)
T ss_pred HhCC
Confidence 7653
|
|
| >PRK14243 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-39 Score=355.60 Aligned_cols=219 Identities=32% Similarity=0.465 Sum_probs=185.0
Q ss_pred cEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCC-----CCCCeEEECCeecC--CcCH
Q 000984 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYD-----PQAGEVLIDGINLK--EFQL 455 (1198)
Q Consensus 383 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~-----~~~G~i~i~g~~~~--~~~~ 455 (1198)
.|+++|++++|+. .++|+|+||+|++||+++|+|+||||||||+++|+|++. |++|+|.++|.++. ..+.
T Consensus 10 ~l~i~~v~~~~~~---~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 86 (264)
T PRK14243 10 VLRTENLNVYYGS---FLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDP 86 (264)
T ss_pred EEEEeeeEEEECC---EEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccccccCh
Confidence 4899999999963 369999999999999999999999999999999999976 37999999999885 3455
Q ss_pred HHHhcceEEEcCCCCCCcccHHHHHhcCCCCC--C---HHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHH
Q 000984 456 QWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDA--T---TEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQR 530 (1198)
Q Consensus 456 ~~~r~~i~~v~Q~~~l~~~ti~~Ni~~~~~~~--~---~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqr 530 (1198)
..+|++++|++|+|.+|..|+++|+.++.... . ++++.++++.+++.+++ +......+.+||||||||
T Consensus 87 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l-------~~~~~~~~~~LSgGq~qr 159 (264)
T PRK14243 87 VEVRRRIGMVFQKPNPFPKSIYDNIAYGARINGYKGDMDELVERSLRQAALWDEV-------KDKLKQSGLSLSGGQQQR 159 (264)
T ss_pred HHHhhhEEEEccCCccccccHHHHHHhhhhhcCcchHHHHHHHHHHHHhCchhhH-------HHHhcCCcccCCHHHHHH
Confidence 67788999999999999889999998753211 1 12333344444443332 223466778999999999
Q ss_pred HhHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhCCCeEEEEecCcchhhc-cCEEEEEe---------CCEEEE
Q 000984 531 IAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRN-ADMIAVIH---------RGKIVE 600 (1198)
Q Consensus 531 i~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~-~d~i~~l~---------~G~i~~ 600 (1198)
++||||++++|++|||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+.. ||+|++|+ +|++++
T Consensus 160 v~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tvi~vtH~~~~~~~~~d~v~~l~~~~~~~~~~~g~i~~ 239 (264)
T PRK14243 160 LCIARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKEQYTIIIVTHNMQQAARVSDMTAFFNVELTEGGGRYGYLVE 239 (264)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEecccccccccCceEEE
Confidence 99999999999999999999999999999999999988777899999999998765 99999998 899999
Q ss_pred ecChhhHhcCC
Q 000984 601 KGTHSKLVEDP 611 (1198)
Q Consensus 601 ~g~~~~l~~~~ 611 (1198)
.|+++++.+.+
T Consensus 240 ~~~~~~~~~~~ 250 (264)
T PRK14243 240 FDRTEKIFNSP 250 (264)
T ss_pred eCCHHHHHhCC
Confidence 99999997653
|
|
| >PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-39 Score=361.27 Aligned_cols=221 Identities=29% Similarity=0.546 Sum_probs=183.2
Q ss_pred cEEEEeEEEEcCCCC--CCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCc----CHH
Q 000984 383 DIELRDVYFSYPARP--NEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEF----QLQ 456 (1198)
Q Consensus 383 ~i~~~~v~~~y~~~~--~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~----~~~ 456 (1198)
.|+++|++++|+... .+++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.+||.++... +..
T Consensus 2 ~i~~~~l~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (287)
T PRK13641 2 SIKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLK 81 (287)
T ss_pred EEEEEEEEEEcCCCCCccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence 378999999996321 14699999999999999999999999999999999999999999999999998653 245
Q ss_pred HHhcceEEEcCCC--CCCcccHHHHHhcCCC--CCCHHHHHHHHHHhcHHHHHHhCCCCcc-chhcCCCCCCChHHHHHH
Q 000984 457 WIRKKIGLVSQEP--VLFTGSIKDNIAYGKD--DATTEEIRVATELANAAKFIDKLPQGID-TLVGEHGTQLSGGQKQRI 531 (1198)
Q Consensus 457 ~~r~~i~~v~Q~~--~l~~~ti~~Ni~~~~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~-t~v~~~g~~lSgGqkqri 531 (1198)
..++.++|++|+| .+|..|++|||.++.. ..+.++..+. +.+.++.+ |++ ........+||||||||+
T Consensus 82 ~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~-----~~~~l~~~--gL~~~~~~~~~~~LSgGq~qrl 154 (287)
T PRK13641 82 KLRKKVSLVFQFPEAQLFENTVLKDVEFGPKNFGFSEDEAKEK-----ALKWLKKV--GLSEDLISKSPFELSGGQMRRV 154 (287)
T ss_pred HHHhceEEEEeChhhhhccchHHHHHHHHHHHcCCCHHHHHHH-----HHHHHHHc--CCChhHhhCCcccCCHHHHHHH
Confidence 6678999999998 5778899999987532 1222222111 12333443 564 345667789999999999
Q ss_pred hHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh-CCCeEEEEecCcchhh-ccCEEEEEeCCEEEEecChhhHhc
Q 000984 532 AIARAILKDPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKGTHSKLVE 609 (1198)
Q Consensus 532 ~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~ 609 (1198)
+|||||+.+|++|||||||++||+.+.+.+.+.++++. ++.|+|++||+++.+. .||+|++|++|++++.|+++++..
T Consensus 155 ~laral~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tvlivsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 234 (287)
T PRK13641 155 AIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMDDVAEYADDVLVLEHGKLIKHASPKEIFS 234 (287)
T ss_pred HHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 99999999999999999999999999999999998875 4789999999999886 599999999999999999998865
Q ss_pred C
Q 000984 610 D 610 (1198)
Q Consensus 610 ~ 610 (1198)
.
T Consensus 235 ~ 235 (287)
T PRK13641 235 D 235 (287)
T ss_pred C
Confidence 3
|
|
| >PRK14262 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-39 Score=355.56 Aligned_cols=219 Identities=33% Similarity=0.519 Sum_probs=183.1
Q ss_pred cEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCC-----CCCeEEECCeecCCc--CH
Q 000984 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDP-----QAGEVLIDGINLKEF--QL 455 (1198)
Q Consensus 383 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~-----~~G~i~i~g~~~~~~--~~ 455 (1198)
.|+++|++++|++ .++|+|+||++++||+++|+|+||||||||+++|+|+++| ++|+|.+||.++... +.
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~~~ 79 (250)
T PRK14262 3 IIEIENFSAYYGE---KKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDV 79 (250)
T ss_pred eEEEEeeEEEeCC---ceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchhhH
Confidence 4899999999963 4699999999999999999999999999999999999874 899999999988653 34
Q ss_pred HHHhcceEEEcCCCCCCcccHHHHHhcCCCC---CCHH----HHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHH
Q 000984 456 QWIRKKIGLVSQEPVLFTGSIKDNIAYGKDD---ATTE----EIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQK 528 (1198)
Q Consensus 456 ~~~r~~i~~v~Q~~~l~~~ti~~Ni~~~~~~---~~~~----~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqk 528 (1198)
..++++++|++|+|.+|..|++||+.++... ...+ ++.++++..++.+. ++........+||||||
T Consensus 80 ~~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-------~~~~~~~~~~~LS~Gq~ 152 (250)
T PRK14262 80 TEYRKKVGMVFQKPTPFPMSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDE-------VKSELNKPGTRLSGGQQ 152 (250)
T ss_pred HHhhhhEEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCch-------hHHHHhCChhhcCHHHH
Confidence 5667899999999999999999999875211 1111 22333333332221 12345677789999999
Q ss_pred HHHhHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhCCCeEEEEecCcchhh-ccCEEEEEeCCEEEEecChhhH
Q 000984 529 QRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKGTHSKL 607 (1198)
Q Consensus 529 qri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l 607 (1198)
||++||||++++|+++||||||++||+.+...+.+.|+++.+++|+|++||+++.+. .||+|++|++|++++.|+++++
T Consensus 153 qr~~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tili~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 232 (250)
T PRK14262 153 QRLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELSENYTIVIVTHNIGQAIRIADYIAFMYRGELIEYGPTREI 232 (250)
T ss_pred HHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHH
Confidence 999999999999999999999999999999999999998877899999999999875 4999999999999999999998
Q ss_pred hcCC
Q 000984 608 VEDP 611 (1198)
Q Consensus 608 ~~~~ 611 (1198)
.+.+
T Consensus 233 ~~~~ 236 (250)
T PRK14262 233 VERP 236 (250)
T ss_pred HhCC
Confidence 7653
|
|
| >PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-39 Score=356.47 Aligned_cols=220 Identities=31% Similarity=0.544 Sum_probs=183.3
Q ss_pred cccEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCc-------
Q 000984 381 RGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEF------- 453 (1198)
Q Consensus 381 ~g~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~------- 453 (1198)
++.++++|++++|++ +++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++...
T Consensus 3 ~~~l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~ 79 (257)
T PRK10619 3 ENKLNVIDLHKRYGE---HEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQL 79 (257)
T ss_pred CccEEEeeeEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEccccccccccc
Confidence 356999999999963 4699999999999999999999999999999999999999999999999988642
Q ss_pred ------CHHHHhcceEEEcCCCCCCc-ccHHHHHhcCCC---CCCHHHHHHHHHHhcHHHHHHhCCCCccchh-cCCCCC
Q 000984 454 ------QLQWIRKKIGLVSQEPVLFT-GSIKDNIAYGKD---DATTEEIRVATELANAAKFIDKLPQGIDTLV-GEHGTQ 522 (1198)
Q Consensus 454 ------~~~~~r~~i~~v~Q~~~l~~-~ti~~Ni~~~~~---~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v-~~~g~~ 522 (1198)
....+|++++|+||++.++. .|++||+.++.. .....+..+ .+.+.++.+ |+.... ......
T Consensus 80 ~~~~~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~~~~~~~~~~-----~~~~~l~~~--gl~~~~~~~~~~~ 152 (257)
T PRK10619 80 KVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARE-----RAVKYLAKV--GIDERAQGKYPVH 152 (257)
T ss_pred ccccchHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHhCCCCHHHHHH-----HHHHHHHHc--CCChhhhhCCccc
Confidence 13466789999999999996 599999986321 111211111 112333343 555443 566789
Q ss_pred CChHHHHHHhHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhC-CCeEEEEecCcchhhc-cCEEEEEeCCEEEE
Q 000984 523 LSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMV-NRTTVIVAHRLSTVRN-ADMIAVIHRGKIVE 600 (1198)
Q Consensus 523 lSgGqkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~-~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~ 600 (1198)
||||||||++|||||+++|+++||||||++||+.+.+.+.+.|+++.+ ++|+|+|||+++.+.. ||+|++|++|++++
T Consensus 153 LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~~ 232 (257)
T PRK10619 153 LSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEE 232 (257)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEE
Confidence 999999999999999999999999999999999999999999988754 7999999999999886 99999999999999
Q ss_pred ecChhhHhcC
Q 000984 601 KGTHSKLVED 610 (1198)
Q Consensus 601 ~g~~~~l~~~ 610 (1198)
.|+++++.+.
T Consensus 233 ~~~~~~~~~~ 242 (257)
T PRK10619 233 EGAPEQLFGN 242 (257)
T ss_pred eCCHHHhhhC
Confidence 9999998754
|
|
| >PRK10070 glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-39 Score=371.48 Aligned_cols=205 Identities=34% Similarity=0.547 Sum_probs=173.5
Q ss_pred ccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHH----hcceEEEcCCCCCCc-c
Q 000984 400 QIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWI----RKKIGLVSQEPVLFT-G 474 (1198)
Q Consensus 400 ~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~----r~~i~~v~Q~~~l~~-~ 474 (1198)
.+|+|+||+|++||+++|+||||||||||+++|.|+++|++|+|.++|.++.+.+...+ |++++|++|++.+|. .
T Consensus 42 ~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~~~ 121 (400)
T PRK10070 42 LGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHM 121 (400)
T ss_pred EEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCCCC
Confidence 37999999999999999999999999999999999999999999999999988876554 358999999999986 6
Q ss_pred cHHHHHhcCCCC--CCH----HHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhhccCCCEEEEeC
Q 000984 475 SIKDNIAYGKDD--ATT----EEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDE 548 (1198)
Q Consensus 475 ti~~Ni~~~~~~--~~~----~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal~~~~~illlDe 548 (1198)
|++||+.++... .+. +++.++++.+ |++........+||||||||++|||||+.+|++|||||
T Consensus 122 Tv~enl~~~~~~~~~~~~~~~~~~~e~L~~~-----------gL~~~~~~~~~~LSgGq~QRv~LArAL~~~P~iLLLDE 190 (400)
T PRK10070 122 TVLDNTAFGMELAGINAEERREKALDALRQV-----------GLENYAHSYPDELSGGMRQRVGLARALAINPDILLMDE 190 (400)
T ss_pred CHHHHHHHHHHhcCCCHHHHHHHHHHHHHHc-----------CCChhhhcCcccCCHHHHHHHHHHHHHhcCCCEEEEEC
Confidence 999999975321 122 2223333333 44444555667899999999999999999999999999
Q ss_pred CCCCCCHHhHHHHHHHHHHHh--CCCeEEEEecCcchhh-ccCEEEEEeCCEEEEecChhhHhcCCCchh
Q 000984 549 ATSALDAESEKVVQEALDRIM--VNRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKGTHSKLVEDPEGAY 615 (1198)
Q Consensus 549 ~ts~lD~~~~~~i~~~i~~~~--~~~t~i~itH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~ 615 (1198)
||++||+.+.+.+++.|.++. .++|+|++||+++.+. .||+|++|++|++++.|+++++..++...|
T Consensus 191 Pts~LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~~~~~~~~Dri~vL~~G~i~~~g~~~~l~~~~~~~~ 260 (400)
T PRK10070 191 AFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLDEAMRIGDRIAIMQNGEVVQVGTPDEILNNPANDY 260 (400)
T ss_pred CCccCCHHHHHHHHHHHHHHHHHCCCeEEEEECCHHHHHHhCCEEEEEECCEEEecCCHHHHHhCcccHH
Confidence 999999999999999998874 3789999999999876 499999999999999999999987644333
|
|
| >TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-39 Score=353.34 Aligned_cols=221 Identities=25% Similarity=0.455 Sum_probs=185.1
Q ss_pred EEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHH-hcce
Q 000984 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWI-RKKI 462 (1198)
Q Consensus 384 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~-r~~i 462 (1198)
|+++|++++|++ +++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++...+.... |..+
T Consensus 3 i~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i 79 (242)
T TIGR03411 3 LYLEGLSVSFDG---FKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIARAGI 79 (242)
T ss_pred EEEEeeEEEcCC---eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCeecCCCCHHHHHhcCe
Confidence 789999999963 469999999999999999999999999999999999999999999999999887766543 4679
Q ss_pred EEEcCCCCCCcc-cHHHHHhcCCCCCCH--HH---HHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHh
Q 000984 463 GLVSQEPVLFTG-SIKDNIAYGKDDATT--EE---IRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARA 536 (1198)
Q Consensus 463 ~~v~Q~~~l~~~-ti~~Ni~~~~~~~~~--~~---~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARa 536 (1198)
+|++|++.+|.+ |++||+.++...... .. .........+.+.++.+ |++.........||||||||++||||
T Consensus 80 ~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~LS~Ge~qrv~lara 157 (242)
T TIGR03411 80 GRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETI--GLADEADRLAGLLSHGQKQWLEIGML 157 (242)
T ss_pred eEeccccccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHc--CCchhhcCChhhCCHHHHHHHHHHHH
Confidence 999999999976 999999875321000 00 00001111223444444 56666677778999999999999999
Q ss_pred hccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhCCCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChhhHhc
Q 000984 537 ILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVE 609 (1198)
Q Consensus 537 l~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~ 609 (1198)
++++|+++||||||++||+.+.+.+.+.++++.+++|+|++||+++.+.. ||+|++|++|++++.|+++++..
T Consensus 158 l~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~~~~~~~~~~~~~ 231 (242)
T TIGR03411 158 LMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAGKHSVVVVEHDMEFVRSIADKVTVLHQGSVLAEGSLDQVQA 231 (242)
T ss_pred HhcCCCEEEecCCccCCCHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCeEEeeCCHHHHhc
Confidence 99999999999999999999999999999988778999999999999875 99999999999999999988864
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-39 Score=361.19 Aligned_cols=220 Identities=33% Similarity=0.576 Sum_probs=183.2
Q ss_pred EEEEeEEEEcCCCC--CCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCc----CHHH
Q 000984 384 IELRDVYFSYPARP--NEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEF----QLQW 457 (1198)
Q Consensus 384 i~~~~v~~~y~~~~--~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~----~~~~ 457 (1198)
|+++|++++|+... ..++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++... +...
T Consensus 3 l~~~~l~~~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (280)
T PRK13649 3 INLQNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIKQ 82 (280)
T ss_pred EEEEEEEEEcCCCCccccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccCHHH
Confidence 78999999997432 13699999999999999999999999999999999999999999999999998753 3466
Q ss_pred HhcceEEEcCCC--CCCcccHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHHhCCCCcc-chhcCCCCCCChHHHHHHh
Q 000984 458 IRKKIGLVSQEP--VLFTGSIKDNIAYGKDD--ATTEEIRVATELANAAKFIDKLPQGID-TLVGEHGTQLSGGQKQRIA 532 (1198)
Q Consensus 458 ~r~~i~~v~Q~~--~l~~~ti~~Ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~-t~v~~~g~~lSgGqkqri~ 532 (1198)
+|++|+|++|+| .+|..|++||+.++... .+.++..+. +.+.++.+ |++ .........||||||||++
T Consensus 83 ~~~~i~~~~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~-----~~~~l~~~--~l~~~~~~~~~~~LSgG~~qrv~ 155 (280)
T PRK13649 83 IRKKVGLVFQFPESQLFEETVLKDVAFGPQNFGVSQEEAEAL-----AREKLALV--GISESLFEKNPFELSGGQMRRVA 155 (280)
T ss_pred HHhheEEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHH-----HHHHHHHc--CCChhhhhCCcccCCHHHHHHHH
Confidence 788999999998 67889999999875321 223322221 12223333 454 2346667889999999999
Q ss_pred HHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhC-CCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChhhHhcC
Q 000984 533 IARAILKDPRILLLDEATSALDAESEKVVQEALDRIMV-NRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVED 610 (1198)
Q Consensus 533 lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~-~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 610 (1198)
||||++.+|++|||||||++||+.+.+.+.+.|+++.+ ++|+|++||+++.+.. ||++++|++|++++.|+++++...
T Consensus 156 la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 235 (280)
T PRK13649 156 IAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLMDDVANYADFVYVLEKGKLVLSGKPKDIFQD 235 (280)
T ss_pred HHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 99999999999999999999999999999999988754 7899999999998865 999999999999999999988653
|
|
| >cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-39 Score=346.51 Aligned_cols=203 Identities=26% Similarity=0.459 Sum_probs=173.8
Q ss_pred EEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcceE
Q 000984 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIG 463 (1198)
Q Consensus 384 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~ 463 (1198)
|+++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+. ..++++++
T Consensus 1 l~~~~l~~~~~~---~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~--~~~~~~i~ 75 (208)
T cd03268 1 LKTNDLTKTYGK---KRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKN--IEALRRIG 75 (208)
T ss_pred CEEEEEEEEECC---eEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCcccch--HHHHhhEE
Confidence 478999999953 4699999999999999999999999999999999999999999999999988754 45678899
Q ss_pred EEcCCCCCC-cccHHHHHhcCCC--CCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhhccC
Q 000984 464 LVSQEPVLF-TGSIKDNIAYGKD--DATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKD 540 (1198)
Q Consensus 464 ~v~Q~~~l~-~~ti~~Ni~~~~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal~~~ 540 (1198)
|++|++.++ +.|++||+.++.. ..+++++.++++..++.+ ........||||||||++||||++.+
T Consensus 76 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LS~G~~qrv~la~al~~~ 144 (208)
T cd03268 76 ALIEAPGFYPNLTARENLRLLARLLGIRKKRIDEVLDVVGLKD-----------SAKKKVKGFSLGMKQRLGIALALLGN 144 (208)
T ss_pred EecCCCccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHH-----------HHhhhHhhCCHHHHHHHHHHHHHhcC
Confidence 999999888 5799999987532 123445555555554433 33445668999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHhHHHHHHHHHHHh-CCCeEEEEecCcchhhc-cCEEEEEeCCEEEEec
Q 000984 541 PRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKG 602 (1198)
Q Consensus 541 ~~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g 602 (1198)
|+++||||||++||+.+.+.+.+.++++. +++|+|++||+++.+.. ||++++|++|++++.|
T Consensus 145 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~g~i~~~g 208 (208)
T cd03268 145 PDLLILDEPTNGLDPDGIKELRELILSLRDQGITVLISSHLLSEIQKVADRIGIINKGKLIEEG 208 (208)
T ss_pred CCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEECCEEEecC
Confidence 99999999999999999999999998865 47899999999998865 9999999999998765
|
Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. |
| >PRK14270 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-39 Score=354.61 Aligned_cols=219 Identities=32% Similarity=0.488 Sum_probs=184.2
Q ss_pred cEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCC-----CCCeEEECCeecCCc--CH
Q 000984 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDP-----QAGEVLIDGINLKEF--QL 455 (1198)
Q Consensus 383 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~-----~~G~i~i~g~~~~~~--~~ 455 (1198)
.|+++|++++|+. +++|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|.++|.++... +.
T Consensus 4 ~l~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~ 80 (251)
T PRK14270 4 KMESKNLNLWYGE---KQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDV 80 (251)
T ss_pred EEEEEEeEEEECC---eeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccccccH
Confidence 5899999999963 4699999999999999999999999999999999999875 799999999998653 34
Q ss_pred HHHhcceEEEcCCCCCCcccHHHHHhcCCCCC---CH----HHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHH
Q 000984 456 QWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDA---TT----EEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQK 528 (1198)
Q Consensus 456 ~~~r~~i~~v~Q~~~l~~~ti~~Ni~~~~~~~---~~----~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqk 528 (1198)
..+|++++|+||++.+|..|++||+.++.... +. +++.++++.+++.+ ++..........||||||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~~~~~~~~~~~~LS~G~~ 153 (251)
T PRK14270 81 VELRKRVGMVFQKPNPFPMSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWD-------EVKDDLKKSALKLSGGQQ 153 (251)
T ss_pred HHHHhheEEEecCCCcCCCcHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCch-------hhhhHhhCCcccCCHHHH
Confidence 56788999999999999999999998753211 11 22333344333322 222345567789999999
Q ss_pred HHHhHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhCCCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChhhH
Q 000984 529 QRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKL 607 (1198)
Q Consensus 529 qri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l 607 (1198)
||++||||++++|++|||||||++||+.+...+.+.|+++.+++|+|++||+++.+.. ||+|++|++|++++.|+++++
T Consensus 154 qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 233 (251)
T PRK14270 154 QRLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKKEYTIVIVTHNMQQASRVSDYTAFFLMGDLIEFNKTEKI 233 (251)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEEEcCHHHHHHhcCEEEEEECCeEEEeCCHHHH
Confidence 9999999999999999999999999999999999999988777999999999998865 999999999999999999998
Q ss_pred hcCC
Q 000984 608 VEDP 611 (1198)
Q Consensus 608 ~~~~ 611 (1198)
...+
T Consensus 234 ~~~~ 237 (251)
T PRK14270 234 FLEP 237 (251)
T ss_pred hcCC
Confidence 7653
|
|
| >cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-39 Score=349.54 Aligned_cols=209 Identities=25% Similarity=0.431 Sum_probs=175.4
Q ss_pred EEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcceE
Q 000984 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIG 463 (1198)
Q Consensus 384 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~ 463 (1198)
|+++|++++|++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++... ...++++++
T Consensus 1 i~~~~~~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~-~~~~~~~i~ 76 (220)
T cd03265 1 IEVENLVKKYGD---FEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVRE-PREVRRRIG 76 (220)
T ss_pred CEEEEEEEEECC---EEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecCcC-hHHHhhcEE
Confidence 478999999963 4699999999999999999999999999999999999999999999999988653 356678899
Q ss_pred EEcCCCCCCc-ccHHHHHhcCCCC--CCH----HHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHh
Q 000984 464 LVSQEPVLFT-GSIKDNIAYGKDD--ATT----EEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARA 536 (1198)
Q Consensus 464 ~v~Q~~~l~~-~ti~~Ni~~~~~~--~~~----~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARa 536 (1198)
|++|++.++. .|+++|+.++... .+. +++.+.++.. |++.........||||||||++||||
T Consensus 77 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~-----------~l~~~~~~~~~~LS~G~~qr~~la~a 145 (220)
T cd03265 77 IVFQDLSVDDELTGWENLYIHARLYGVPGAERRERIDELLDFV-----------GLLEAADRLVKTYSGGMRRRLEIARS 145 (220)
T ss_pred EecCCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHc-----------CCHHHhhCChhhCCHHHHHHHHHHHH
Confidence 9999998886 5999999864211 111 2233333333 33333444556899999999999999
Q ss_pred hccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhC--CCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChhhH
Q 000984 537 ILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKL 607 (1198)
Q Consensus 537 l~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l 607 (1198)
++.+|+++||||||++||+++.+.+.+.++++.+ ++|+|++||+++.+.. ||+|++|++|++++.|+++++
T Consensus 146 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 219 (220)
T cd03265 146 LVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYMEEAEQLCDRVAIIDHGRIIAEGTPEEL 219 (220)
T ss_pred HhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEeCChHHc
Confidence 9999999999999999999999999999988753 6899999999998865 999999999999999988764
|
In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-39 Score=358.50 Aligned_cols=215 Identities=31% Similarity=0.530 Sum_probs=183.7
Q ss_pred cEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcce
Q 000984 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKI 462 (1198)
Q Consensus 383 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i 462 (1198)
.++++|++++|+.+ .++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++...+...+++++
T Consensus 3 ~l~~~~l~~~~~~~--~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i 80 (277)
T PRK13652 3 LIETRDLCYSYSGS--KEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREVRKFV 80 (277)
T ss_pred eEEEEEEEEEeCCC--CceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhhe
Confidence 37899999999632 3599999999999999999999999999999999999999999999999999877777888899
Q ss_pred EEEcCCCC--CCcccHHHHHhcCCC--CCCHH----HHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHH
Q 000984 463 GLVSQEPV--LFTGSIKDNIAYGKD--DATTE----EIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIA 534 (1198)
Q Consensus 463 ~~v~Q~~~--l~~~ti~~Ni~~~~~--~~~~~----~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lA 534 (1198)
+|++|+|. +|..|++||+.++.. ..+.+ ++.++++.. |+..........||||||||++||
T Consensus 81 ~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~-----------~l~~~~~~~~~~LS~Gq~qrl~la 149 (277)
T PRK13652 81 GLVFQNPDDQIFSPTVEQDIAFGPINLGLDEETVAHRVSSALHML-----------GLEELRDRVPHHLSGGEKKRVAIA 149 (277)
T ss_pred EEEecCcccccccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHC-----------CChhHhcCCcccCCHHHHHHHHHH
Confidence 99999983 778899999986432 12222 233333333 333344555678999999999999
Q ss_pred HhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhC--CCeEEEEecCcchhh-ccCEEEEEeCCEEEEecChhhHhcC
Q 000984 535 RAILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKGTHSKLVED 610 (1198)
Q Consensus 535 Ral~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~~ 610 (1198)
|||+.+|++|||||||++||+.+.+.+.+.++++.+ ++|+|++||+++.+. .||+|++|++|++++.|+++++.+.
T Consensus 150 raL~~~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~ 228 (277)
T PRK13652 150 GVIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLDLVPEMADYIYVMDKGRIVAYGTVEEIFLQ 228 (277)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEEECCHHHHhcC
Confidence 999999999999999999999999999999988754 689999999999985 5999999999999999999998754
|
|
| >cd03290 ABCC_SUR1_N The SUR domain 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-39 Score=346.03 Aligned_cols=210 Identities=31% Similarity=0.481 Sum_probs=184.6
Q ss_pred EEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCH----HHHhc
Q 000984 385 ELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQL----QWIRK 460 (1198)
Q Consensus 385 ~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~----~~~r~ 460 (1198)
.+.|++|+|+.+ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.+. ...|+
T Consensus 2 ~~~~~~~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 79 (218)
T cd03290 2 QVTNGYFSWGSG--LATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSRNRY 79 (218)
T ss_pred eeeeeEEecCCC--CcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCcccccccccccchhhcc
Confidence 467899999743 469999999999999999999999999999999999999999999999998876542 23567
Q ss_pred ceEEEcCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhhccC
Q 000984 461 KIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKD 540 (1198)
Q Consensus 461 ~i~~v~Q~~~l~~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal~~~ 540 (1198)
.++|++|+|.+|+.|++||+.++.+ ...++..++++.+++.+.+..+|.|+++.++....+||||||||++||||++++
T Consensus 80 ~i~~~~q~~~~~~~t~~~nl~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~qrv~laral~~~ 158 (218)
T cd03290 80 SVAYAAQKPWLLNATVEENITFGSP-FNKQRYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQRICVARALYQN 158 (218)
T ss_pred eEEEEcCCCccccccHHHHHhhcCc-CCHHHHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHHHHHHHHHHHHHhhC
Confidence 8999999999999999999998643 345566778888888888889999999999999999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHhHHHHHH--HHHHHh-CCCeEEEEecCcchhhccCEEEEEeCCE
Q 000984 541 PRILLLDEATSALDAESEKVVQE--ALDRIM-VNRTTVIVAHRLSTVRNADMIAVIHRGK 597 (1198)
Q Consensus 541 ~~illlDe~ts~lD~~~~~~i~~--~i~~~~-~~~t~i~itH~~~~~~~~d~i~~l~~G~ 597 (1198)
|+++||||||++||+.+...+.+ .++.+. +++|+|++||+.+.+..||++++|++|+
T Consensus 159 p~illlDEPt~~LD~~~~~~l~~~~ll~~~~~~~~tii~~sH~~~~~~~~d~i~~l~~G~ 218 (218)
T cd03290 159 TNIVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLVTHKLQYLPHADWIIAMKDGS 218 (218)
T ss_pred CCEEEEeCCccccCHHHHHHHHHHHHHHHHhcCCCEEEEEeCChHHHhhCCEEEEecCCC
Confidence 99999999999999998887776 444443 3689999999999998899999999874
|
The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. |
| >PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-39 Score=352.02 Aligned_cols=217 Identities=23% Similarity=0.455 Sum_probs=184.1
Q ss_pred cEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHH-Hhcc
Q 000984 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQW-IRKK 461 (1198)
Q Consensus 383 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~-~r~~ 461 (1198)
.++++|++++|++ +++|+|+||++++||+++|+||||||||||+++|.|+++|++|+|.++|.++...+... .|++
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 79 (241)
T PRK10895 3 TLTAKNLAKAYKG---RRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRG 79 (241)
T ss_pred eEEEeCcEEEeCC---EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHHhC
Confidence 3789999999963 46999999999999999999999999999999999999999999999999998777544 5778
Q ss_pred eEEEcCCCCCCc-ccHHHHHhcCCCC---CCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhh
Q 000984 462 IGLVSQEPVLFT-GSIKDNIAYGKDD---ATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAI 537 (1198)
Q Consensus 462 i~~v~Q~~~l~~-~ti~~Ni~~~~~~---~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal 537 (1198)
++|++|++.+|. .|++||+.++... .+.++.+ ..+.+.++.+ |++.........||||||||++||||+
T Consensus 80 i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~laral 152 (241)
T PRK10895 80 IGYLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQRE-----DRANELMEEF--HIEHLRDSMGQSLSGGERRRVEIARAL 152 (241)
T ss_pred eEEeccCCcccccCcHHHHHhhhhhcccccCHHHHH-----HHHHHHHHHc--CCHHHhhcchhhCCHHHHHHHHHHHHH
Confidence 999999999887 5999999875311 1122111 1223445555 566666777789999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh-CCCeEEEEecCcchhh-ccCEEEEEeCCEEEEecChhhHhc
Q 000984 538 LKDPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKGTHSKLVE 609 (1198)
Q Consensus 538 ~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~ 609 (1198)
+++|++|||||||++||+.+.+.+.+.++++. +++|+|++||+++.+. .||+|++|++|++++.|+++++..
T Consensus 153 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~ 226 (241)
T PRK10895 153 AANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNVRETLAVCERAYIVSQGHLIAHGTPTEILQ 226 (241)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhcCEEEEEeCCeEEeeCCHHHHhc
Confidence 99999999999999999999999998888765 4789999999998775 499999999999999999998865
|
|
| >PRK14253 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-38 Score=352.55 Aligned_cols=218 Identities=30% Similarity=0.492 Sum_probs=184.0
Q ss_pred cEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCC-----CCCeEEECCeecC-CcCHH
Q 000984 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDP-----QAGEVLIDGINLK-EFQLQ 456 (1198)
Q Consensus 383 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~-----~~G~i~i~g~~~~-~~~~~ 456 (1198)
.++++|++++|+. +++|+|+||+|++||+++|+||||||||||+++|+|+++| .+|+|.++|.++. ..+..
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~ 79 (249)
T PRK14253 3 KFNIENLDLFYGE---NQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDVA 79 (249)
T ss_pred eEEEeccEEEECC---eeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccccchH
Confidence 4889999999963 4699999999999999999999999999999999999986 5999999999985 44566
Q ss_pred HHhcceEEEcCCCCCCcccHHHHHhcCCCC--CC-H----HHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHH
Q 000984 457 WIRKKIGLVSQEPVLFTGSIKDNIAYGKDD--AT-T----EEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQ 529 (1198)
Q Consensus 457 ~~r~~i~~v~Q~~~l~~~ti~~Ni~~~~~~--~~-~----~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkq 529 (1198)
.+|+.++|++|+|.+|..|++||+.++... .. . +++.++++..++.+ ++..........|||||||
T Consensus 80 ~~~~~i~~~~q~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-------~~~~~~~~~~~~LS~G~~q 152 (249)
T PRK14253 80 DLRIKVGMVFQKPNPFPMSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWD-------EVKDRLKSHAFGLSGGQQQ 152 (249)
T ss_pred HHHhheeEEecCCCcCcccHHHHHHhHHHhcCCCchHHHHHHHHHHHHHcCCch-------hhhHHhhcCcccCCHHHHH
Confidence 788899999999999999999999875321 11 1 12222333333222 2234556677899999999
Q ss_pred HHhHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhCCCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChhhHh
Q 000984 530 RIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLV 608 (1198)
Q Consensus 530 ri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~ 608 (1198)
|++||||++.+|+++||||||++||+.+.+.+.+.++++.+++|+|++||+++.+.. ||++++|++|++++.|+++++.
T Consensus 153 rv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 232 (249)
T PRK14253 153 RLCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEELKKNYTIVIVTHSMQQARRISDRTAFFLMGELVEHDDTQVIF 232 (249)
T ss_pred HHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999999999999999999988777999999999999876 9999999999999999998886
Q ss_pred cC
Q 000984 609 ED 610 (1198)
Q Consensus 609 ~~ 610 (1198)
.+
T Consensus 233 ~~ 234 (249)
T PRK14253 233 SN 234 (249)
T ss_pred cC
Confidence 54
|
|
| >TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-39 Score=367.86 Aligned_cols=207 Identities=29% Similarity=0.468 Sum_probs=173.4
Q ss_pred CccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCe----ecCCcCHHHH---h-cceEEEcCCCC
Q 000984 399 EQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGI----NLKEFQLQWI---R-KKIGLVSQEPV 470 (1198)
Q Consensus 399 ~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~----~~~~~~~~~~---r-~~i~~v~Q~~~ 470 (1198)
..+|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||. ++...+...+ | ++++||+|++.
T Consensus 37 ~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vfQ~~~ 116 (382)
T TIGR03415 37 VVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVSRGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMVFQKFA 116 (382)
T ss_pred EEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEecccccccCCHHHHHHHhcCCEEEEECCCc
Confidence 45899999999999999999999999999999999999999999999996 5666665544 3 57999999999
Q ss_pred CCc-ccHHHHHhcCCCC--CCHH----HHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhhccCCCE
Q 000984 471 LFT-GSIKDNIAYGKDD--ATTE----EIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRI 543 (1198)
Q Consensus 471 l~~-~ti~~Ni~~~~~~--~~~~----~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal~~~~~i 543 (1198)
+|. .|++||+.++... .+.+ +..++++.. |++........+||||||||++|||||+.+|+|
T Consensus 117 l~p~~Tv~eNi~~~~~~~g~~~~~~~~~a~e~le~v-----------gL~~~~~~~~~~LSgGq~QRV~LARALa~~P~I 185 (382)
T TIGR03415 117 LMPWLTVEENVAFGLEMQGMPEAERRKRVDEQLELV-----------GLAQWADKKPGELSGGMQQRVGLARAFAMDADI 185 (382)
T ss_pred CCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHc-----------CCchhhcCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 996 7999999986421 1222 223333333 444444556678999999999999999999999
Q ss_pred EEEeCCCCCCCHHhHHHHHHHHHHHhC--CCeEEEEecCcchhh-ccCEEEEEeCCEEEEecChhhHhcCCCchhH
Q 000984 544 LLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKGTHSKLVEDPEGAYS 616 (1198)
Q Consensus 544 lllDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~ 616 (1198)
||||||||+||+.+.+.+++.+.++.+ ++|+|+|||+++.+. .||+|++|++|++++.|++++++.++...|.
T Consensus 186 LLlDEPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl~e~~~l~DrI~vl~~G~iv~~g~~~ei~~~p~~~~~ 261 (382)
T TIGR03415 186 LLMDEPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDLDEALKIGNRIAIMEGGRIIQHGTPEEIVLNPANDYV 261 (382)
T ss_pred EEEECCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHhhCcchHHH
Confidence 999999999999999999999988754 789999999999875 5999999999999999999999876544443
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines. |
| >PRK14271 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-38 Score=355.92 Aligned_cols=220 Identities=26% Similarity=0.488 Sum_probs=185.1
Q ss_pred cEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCC-----CCCeEEECCeecCCcC-HH
Q 000984 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDP-----QAGEVLIDGINLKEFQ-LQ 456 (1198)
Q Consensus 383 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~-----~~G~i~i~g~~~~~~~-~~ 456 (1198)
.++++|++++|+. +++|+|+||+|++||+++|+|+||||||||+++|.|+++| ++|+|.++|.++.+.+ ..
T Consensus 21 ~l~i~nl~~~~~~---~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~ 97 (276)
T PRK14271 21 AMAAVNLTLGFAG---KTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDVL 97 (276)
T ss_pred EEEEeeEEEEECC---EEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccchhH
Confidence 5899999999963 4699999999999999999999999999999999999986 6999999999987653 45
Q ss_pred HHhcceEEEcCCCCCCcccHHHHHhcCCCC---CCHHHHHHHHHHhcHHHHHHhC--CCCccchhcCCCCCCChHHHHHH
Q 000984 457 WIRKKIGLVSQEPVLFTGSIKDNIAYGKDD---ATTEEIRVATELANAAKFIDKL--PQGIDTLVGEHGTQLSGGQKQRI 531 (1198)
Q Consensus 457 ~~r~~i~~v~Q~~~l~~~ti~~Ni~~~~~~---~~~~~~~~~~~~~~~~~~i~~l--~~g~~t~v~~~g~~lSgGqkqri 531 (1198)
.+|++++|++|+|.+|..|+++|+.++... .++++..... .+.++.+ +..+++.+.....+||||||||+
T Consensus 98 ~~~~~i~~v~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~-----~~~l~~~~l~~~~~~~l~~~~~~LSgGq~qrl 172 (276)
T PRK14271 98 EFRRRVGMLFQRPNPFPMSIMDNVLAGVRAHKLVPRKEFRGVA-----QARLTEVGLWDAVKDRLSDSPFRLSGGQQQLL 172 (276)
T ss_pred HHhhheEEeccCCccCCccHHHHHHHHHHhccCCCHHHHHHHH-----HHHHHHcCCCchhhhHhhCCcccCCHHHHHHH
Confidence 678899999999999999999999875321 2333332211 1122222 22223456677889999999999
Q ss_pred hHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhCCCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChhhHhcC
Q 000984 532 AIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVED 610 (1198)
Q Consensus 532 ~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 610 (1198)
+||||++++|+++||||||++||+.+.+.+.+.++++.+++|+|++||+++.+.. ||++++|++|++++.|+++++.+.
T Consensus 173 ~LAral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiiivsH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~ 252 (276)
T PRK14271 173 CLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLADRLTVIIVTHNLAQAARISDRAALFFDGRLVEEGPTEQLFSS 252 (276)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhC
Confidence 9999999999999999999999999999999999888767899999999998765 999999999999999999999765
|
|
| >PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-38 Score=354.15 Aligned_cols=212 Identities=26% Similarity=0.495 Sum_probs=182.5
Q ss_pred EEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcceE
Q 000984 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIG 463 (1198)
Q Consensus 384 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~ 463 (1198)
++++|++++|++ +++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.++.+.+..++++.++
T Consensus 3 l~~~~l~~~~~~---~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (255)
T PRK11231 3 LRTENLTVGYGT---KRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLARRLA 79 (255)
T ss_pred EEEEeEEEEECC---EEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCcEEEECCEEhHHCCHHHHhhheE
Confidence 789999999963 46999999999999999999999999999999999999999999999999998888788888999
Q ss_pred EEcCCCCCCcc-cHHHHHhcCCCC-------CC---HHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHh
Q 000984 464 LVSQEPVLFTG-SIKDNIAYGKDD-------AT---TEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIA 532 (1198)
Q Consensus 464 ~v~Q~~~l~~~-ti~~Ni~~~~~~-------~~---~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~ 532 (1198)
|++|++.++.+ |+.||+.++... .. .+++..+++.. |++.........||||||||++
T Consensus 80 ~~~q~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-----------~l~~~~~~~~~~LS~G~~qrv~ 148 (255)
T PRK11231 80 LLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQT-----------RINHLADRRLTDLSGGQRQRAF 148 (255)
T ss_pred EecccCCCCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHc-----------CCHHHHcCCcccCCHHHHHHHH
Confidence 99999988865 999999976311 01 12233333333 3444445667789999999999
Q ss_pred HHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh-CCCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChhhHhc
Q 000984 533 IARAILKDPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVE 609 (1198)
Q Consensus 533 lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~ 609 (1198)
||||++++|++|||||||++||+++.+.+.+.|+++. +++|+|++||+++.+.. ||+|++|++|++++.|+++++..
T Consensus 149 laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~l~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 227 (255)
T PRK11231 149 LAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHDLNQASRYCDHLVVLANGHVMAQGTPEEVMT 227 (255)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHhcCEEEEEECCeEEEEcCHHHhcC
Confidence 9999999999999999999999999999999998865 47899999999998865 99999999999999999988764
|
|
| >cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-39 Score=348.60 Aligned_cols=209 Identities=35% Similarity=0.515 Sum_probs=171.6
Q ss_pred EEEEeEEEEcCCCCC-CccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcce
Q 000984 384 IELRDVYFSYPARPN-EQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKI 462 (1198)
Q Consensus 384 i~~~~v~~~y~~~~~-~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i 462 (1198)
|+++|++++|+.... +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. .++++
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~-----~~~~i 75 (220)
T cd03293 1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTG-----PGPDR 75 (220)
T ss_pred CeEEEEEEEcCCCCcceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcc-----ccCcE
Confidence 468999999964211 469999999999999999999999999999999999999999999999998763 35789
Q ss_pred EEEcCCCCCCc-ccHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhhcc
Q 000984 463 GLVSQEPVLFT-GSIKDNIAYGKDD--ATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILK 539 (1198)
Q Consensus 463 ~~v~Q~~~l~~-~ti~~Ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal~~ 539 (1198)
+|++|+|.+|. .|++||+.++... ...++..+ .+.+.++.+ |++........+||||||||++||||+++
T Consensus 76 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LSgG~~qrl~la~al~~ 148 (220)
T cd03293 76 GYVFQQDALLPWLTVLDNVALGLELQGVPKAEARE-----RAEELLELV--GLSGFENAYPHQLSGGMRQRVALARALAV 148 (220)
T ss_pred EEEecccccccCCCHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHHc--CChhhhhCCcccCCHHHHHHHHHHHHHHc
Confidence 99999999886 7999999875321 11111111 112233333 44444555667899999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHhHHHHHHHHHHHh--CCCeEEEEecCcchhh-ccCEEEEEe--CCEEEEecCh
Q 000984 540 DPRILLLDEATSALDAESEKVVQEALDRIM--VNRTTVIVAHRLSTVR-NADMIAVIH--RGKIVEKGTH 604 (1198)
Q Consensus 540 ~~~illlDe~ts~lD~~~~~~i~~~i~~~~--~~~t~i~itH~~~~~~-~~d~i~~l~--~G~i~~~g~~ 604 (1198)
+|+++||||||++||+.+...+.+.|+++. .++|+|++||+++.+. .||++++|+ +|++++.++.
T Consensus 149 ~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~G~i~~~~~~ 218 (220)
T cd03293 149 DPDVLLLDEPFSALDALTREQLQEELLDIWRETGKTVLLVTHDIDEAVFLADRVVVLSARPGRIVAEVEV 218 (220)
T ss_pred CCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCCCEEEEEEEe
Confidence 999999999999999999999999998874 3789999999999875 499999999 7999988764
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-38 Score=351.28 Aligned_cols=204 Identities=32% Similarity=0.447 Sum_probs=174.5
Q ss_pred cEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcce
Q 000984 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKI 462 (1198)
Q Consensus 383 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i 462 (1198)
.|+++|++++|+. .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++. .+++++
T Consensus 12 ~l~i~~l~~~~~~---~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~-----~~~~~i 83 (257)
T PRK11247 12 PLLLNAVSKRYGE---RTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLA-----EAREDT 83 (257)
T ss_pred cEEEEEEEEEECC---cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEHH-----HhhCce
Confidence 4999999999963 46999999999999999999999999999999999999999999999997753 457789
Q ss_pred EEEcCCCCCCc-ccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhhccCC
Q 000984 463 GLVSQEPVLFT-GSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDP 541 (1198)
Q Consensus 463 ~~v~Q~~~l~~-~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal~~~~ 541 (1198)
+|++|+|.+|. .|++||+.++.....++++.++++.. |++........+||||||||++||||++++|
T Consensus 84 ~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~l~~~-----------gl~~~~~~~~~~LSgGqkqrl~laraL~~~p 152 (257)
T PRK11247 84 RLMFQDARLLPWKKVIDNVGLGLKGQWRDAALQALAAV-----------GLADRANEWPAALSGGQKQRVALARALIHRP 152 (257)
T ss_pred EEEecCccCCCCCcHHHHHHhcccchHHHHHHHHHHHc-----------CChhHhcCChhhCCHHHHHHHHHHHHHhcCC
Confidence 99999999886 69999999764221223333334333 4444456667899999999999999999999
Q ss_pred CEEEEeCCCCCCCHHhHHHHHHHHHHHh--CCCeEEEEecCcchhh-ccCEEEEEeCCEEEEecChh
Q 000984 542 RILLLDEATSALDAESEKVVQEALDRIM--VNRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKGTHS 605 (1198)
Q Consensus 542 ~illlDe~ts~lD~~~~~~i~~~i~~~~--~~~t~i~itH~~~~~~-~~d~i~~l~~G~i~~~g~~~ 605 (1198)
+++||||||++||+.+...+.+.|+++. .++|+|++||+++.+. .||+|++|++|++++.|+.+
T Consensus 153 ~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~~~~ 219 (257)
T PRK11247 153 GLLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDVSEAVAMADRVLLIEEGKIGLDLTVD 219 (257)
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecccc
Confidence 9999999999999999999999998864 3689999999999875 49999999999999988754
|
|
| >PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-38 Score=362.35 Aligned_cols=229 Identities=31% Similarity=0.479 Sum_probs=185.0
Q ss_pred cEEEEeEEEEcCCCC-------CCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCH
Q 000984 383 DIELRDVYFSYPARP-------NEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQL 455 (1198)
Q Consensus 383 ~i~~~~v~~~y~~~~-------~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~ 455 (1198)
.|+++|++++|+.+. ...+|+||||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++.+.+.
T Consensus 5 ~l~v~nl~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~~G~i~~~g~~l~~~~~ 84 (327)
T PRK11308 5 LLQAIDLKKHYPVKRGLFKPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKADP 84 (327)
T ss_pred eEEEeeeEEEEcCCCCccccCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCCCCcEEEECCEEcCcCCH
Confidence 489999999996421 2469999999999999999999999999999999999999999999999999988764
Q ss_pred H---HHhcceEEEcCCCC--CCc-ccHHHHHhcCC---CCCCHHHHHHHHHHhcHHHHHHhCCCCcc-chhcCCCCCCCh
Q 000984 456 Q---WIRKKIGLVSQEPV--LFT-GSIKDNIAYGK---DDATTEEIRVATELANAAKFIDKLPQGID-TLVGEHGTQLSG 525 (1198)
Q Consensus 456 ~---~~r~~i~~v~Q~~~--l~~-~ti~~Ni~~~~---~~~~~~~~~~~~~~~~~~~~i~~l~~g~~-t~v~~~g~~lSg 525 (1198)
. .+|++|+||+|+|. ++. -|+.+|+..+. .....++..+ .+.+.++.+ |++ .........|||
T Consensus 85 ~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~~~~~~~~~~~-----~~~~~l~~~--gL~~~~~~~~p~~LSg 157 (327)
T PRK11308 85 EAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINTSLSAAERRE-----KALAMMAKV--GLRPEHYDRYPHMFSG 157 (327)
T ss_pred HHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHccCCCHHHHHH-----HHHHHHHHC--CCChHHhcCCCccCCH
Confidence 3 56789999999993 443 58988886321 1112211111 112223333 332 123556678999
Q ss_pred HHHHHHhHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhC--CCeEEEEecCcchhhc-cCEEEEEeCCEEEEec
Q 000984 526 GQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKG 602 (1198)
Q Consensus 526 Gqkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g 602 (1198)
|||||++|||||+.+|++||+||||++||..+...+.+.|+++.+ +.|+|+|||+++.+.. ||+|++|++|+|+|.|
T Consensus 158 Gq~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~adrv~vm~~G~ive~g 237 (327)
T PRK11308 158 GQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDLSVVEHIADEVMVMYLGRCVEKG 237 (327)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEC
Confidence 999999999999999999999999999999999999999988754 7899999999999975 9999999999999999
Q ss_pred ChhhHhcCCCchhHHH
Q 000984 603 THSKLVEDPEGAYSQL 618 (1198)
Q Consensus 603 ~~~~l~~~~~~~~~~~ 618 (1198)
+.+++.+++...|.+.
T Consensus 238 ~~~~~~~~p~hpyt~~ 253 (327)
T PRK11308 238 TKEQIFNNPRHPYTQA 253 (327)
T ss_pred CHHHHhcCCCCHHHHH
Confidence 9999988765556553
|
|
| >TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-39 Score=363.20 Aligned_cols=217 Identities=25% Similarity=0.454 Sum_probs=180.1
Q ss_pred cEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcce
Q 000984 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKI 462 (1198)
Q Consensus 383 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i 462 (1198)
.|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++... ....|+++
T Consensus 4 ~i~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~-~~~~~~~i 79 (303)
T TIGR01288 4 AIDLVGVSKSYGD---KVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSR-ARLARVAI 79 (303)
T ss_pred EEEEEeEEEEeCC---eEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccc-HHHHhhcE
Confidence 4899999999963 4699999999999999999999999999999999999999999999999998654 35668899
Q ss_pred EEEcCCCCCCc-ccHHHHHhcCCC--CCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhhcc
Q 000984 463 GLVSQEPVLFT-GSIKDNIAYGKD--DATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILK 539 (1198)
Q Consensus 463 ~~v~Q~~~l~~-~ti~~Ni~~~~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal~~ 539 (1198)
+|+||++.++. .|++||+.+... ..+..+....+ .+.++.+ |+..........||||||||++||||+++
T Consensus 80 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~-----~~ll~~~--~l~~~~~~~~~~LSgG~~qrv~la~al~~ 152 (303)
T TIGR01288 80 GVVPQFDNLDPEFTVRENLLVFGRYFGMSTREIEAVI-----PSLLEFA--RLESKADVRVALLSGGMKRRLTLARALIN 152 (303)
T ss_pred EEEeccccCCcCCcHHHHHHHHHHHcCCCHHHHHHHH-----HHHHHHC--CChhHhcCchhhCCHHHHHHHHHHHHHhc
Confidence 99999998884 799999975211 12222222211 1122222 34434455556899999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHhHHHHHHHHHHHh-CCCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChhhHhcC
Q 000984 540 DPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVED 610 (1198)
Q Consensus 540 ~~~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 610 (1198)
+|+++||||||++||+.+...+.+.++++. +++|+|++||+++.+.. ||+|++|++|++++.|+++++...
T Consensus 153 ~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~til~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 225 (303)
T TIGR01288 153 DPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLESGRKIAEGRPHALIDE 225 (303)
T ss_pred CCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhh
Confidence 999999999999999999999999998874 47899999999999865 999999999999999999998653
|
This model does not recognize the highly divergent NodI from Azorhizobium caulinodans. |
| >PRK14266 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-38 Score=351.72 Aligned_cols=221 Identities=30% Similarity=0.520 Sum_probs=186.2
Q ss_pred cEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCC-----CCCCeEEECCeecCC--cCH
Q 000984 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYD-----PQAGEVLIDGINLKE--FQL 455 (1198)
Q Consensus 383 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~-----~~~G~i~i~g~~~~~--~~~ 455 (1198)
.++++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+.+ |++|+|.+||.++.. .+.
T Consensus 3 ~l~~~~v~~~~~~---~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~ 79 (250)
T PRK14266 3 RIEVENLNTYFDD---AHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVDV 79 (250)
T ss_pred EEEEEeEEEEeCC---eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEcccccccH
Confidence 3789999999963 469999999999999999999999999999999999864 389999999999865 345
Q ss_pred HHHhcceEEEcCCCCCCcccHHHHHhcCCCC---CCH----HHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHH
Q 000984 456 QWIRKKIGLVSQEPVLFTGSIKDNIAYGKDD---ATT----EEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQK 528 (1198)
Q Consensus 456 ~~~r~~i~~v~Q~~~l~~~ti~~Ni~~~~~~---~~~----~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqk 528 (1198)
..+|++++|+||+|++|..|++||+.++... .+. +++.++++.+++.+++. ...++.+..||||||
T Consensus 80 ~~~~~~i~~~~q~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-------~~~~~~~~~LS~Gq~ 152 (250)
T PRK14266 80 VELRKKVGMVFQKPNPFPKSIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEVK-------DKLDKSALGLSGGQQ 152 (250)
T ss_pred HHHhhheEEEecCCccCcchHHHHHHhHHhhcCCCCHHHHHHHHHHHHHHcCCchhHH-------HHHhCCcccCCHHHH
Confidence 6778899999999999999999999875321 111 23344455555443332 234566789999999
Q ss_pred HHHhHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhCCCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChhhH
Q 000984 529 QRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKL 607 (1198)
Q Consensus 529 qri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l 607 (1198)
||++||||++++|+++||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+.. +|++++|++|++++.|+++++
T Consensus 153 qrv~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~~~~i~~l~~G~i~~~g~~~~~ 232 (250)
T PRK14266 153 QRLCIARTIAVSPEVILMDEPCSALDPISTTKIEDLIHKLKEDYTIVIVTHNMQQATRVSKYTSFFLNGEIIESGLTDQI 232 (250)
T ss_pred HHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCeEEEEECCHHHHHhhcCEEEEEECCeEEEeCCHHHH
Confidence 9999999999999999999999999999999999999988778999999999998876 899999999999999999998
Q ss_pred hcCCCc
Q 000984 608 VEDPEG 613 (1198)
Q Consensus 608 ~~~~~~ 613 (1198)
...+..
T Consensus 233 ~~~~~~ 238 (250)
T PRK14266 233 FINPKD 238 (250)
T ss_pred HhCCCC
Confidence 765433
|
|
| >cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-39 Score=332.60 Aligned_cols=172 Identities=39% Similarity=0.705 Sum_probs=161.2
Q ss_pred EEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcceE
Q 000984 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIG 463 (1198)
Q Consensus 384 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~ 463 (1198)
|+++|++++|+.. ..++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.+...+|++++
T Consensus 1 i~~~~l~~~~~~~-~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (173)
T cd03246 1 LEVENVSFRYPGA-EPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNELGDHVG 79 (173)
T ss_pred CEEEEEEEEcCCC-CCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEcccCCHHHHHhheE
Confidence 4789999999742 246999999999999999999999999999999999999999999999999999888888899999
Q ss_pred EEcCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhhccCCCE
Q 000984 464 LVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRI 543 (1198)
Q Consensus 464 ~v~Q~~~l~~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal~~~~~i 543 (1198)
|++|+|++|..|++||+ ||||||||++||||++++|++
T Consensus 80 ~~~q~~~~~~~tv~~~l------------------------------------------LS~G~~qrv~la~al~~~p~~ 117 (173)
T cd03246 80 YLPQDDELFSGSIAENI------------------------------------------LSGGQRQRLGLARALYGNPRI 117 (173)
T ss_pred EECCCCccccCcHHHHC------------------------------------------cCHHHHHHHHHHHHHhcCCCE
Confidence 99999999999999998 999999999999999999999
Q ss_pred EEEeCCCCCCCHHhHHHHHHHHHHHh-CCCeEEEEecCcchhhccCEEEEEeCCEE
Q 000984 544 LLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRNADMIAVIHRGKI 598 (1198)
Q Consensus 544 lllDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~~~d~i~~l~~G~i 598 (1198)
+||||||++||+.+.+.+.+.++++. +++|+|++||+++.+..||+|++|++|++
T Consensus 118 lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~d~v~~l~~G~i 173 (173)
T cd03246 118 LVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPETLASADRILVLEDGRV 173 (173)
T ss_pred EEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhCCEEEEEECCCC
Confidence 99999999999999999999998875 47899999999999888999999999974
|
They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra |
| >cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-39 Score=345.93 Aligned_cols=207 Identities=31% Similarity=0.543 Sum_probs=172.7
Q ss_pred EEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcceE
Q 000984 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIG 463 (1198)
Q Consensus 384 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~ 463 (1198)
|+++|++++|+. +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+.. +++++
T Consensus 1 i~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~~~~~~~--~~~i~ 75 (213)
T cd03301 1 VELENVTKRFGN---VTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPK--DRDIA 75 (213)
T ss_pred CEEEeeEEEECC---eeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCcc--cceEE
Confidence 478999999964 3699999999999999999999999999999999999999999999999998765543 46899
Q ss_pred EEcCCCCCCc-ccHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhhccC
Q 000984 464 LVSQEPVLFT-GSIKDNIAYGKDD--ATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKD 540 (1198)
Q Consensus 464 ~v~Q~~~l~~-~ti~~Ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal~~~ 540 (1198)
|++|++.+|. .|++||+.++... ...++..+. +.+.++.+ |++.........||||||||++||||++++
T Consensus 76 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~-----~~~~l~~~--~l~~~~~~~~~~LS~G~~qr~~laral~~~ 148 (213)
T cd03301 76 MVFQNYALYPHMTVYDNIAFGLKLRKVPKDEIDER-----VREVAELL--QIEHLLDRKPKQLSGGQRQRVALGRAIVRE 148 (213)
T ss_pred EEecChhhccCCCHHHHHHHHHHhcCCCHHHHHHH-----HHHHHHHc--CCHHHHhCChhhCCHHHHHHHHHHHHHhcC
Confidence 9999999885 6999999875211 122221111 12223333 455555666778999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHhHHHHHHHHHHHhC--CCeEEEEecCcchhhc-cCEEEEEeCCEEEEec
Q 000984 541 PRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKG 602 (1198)
Q Consensus 541 ~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g 602 (1198)
|+++||||||++||+++.+.+.+.|+++.+ ++|+|++||+++.+.. ||+|++|++|++++.|
T Consensus 149 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~g~~~~~g 213 (213)
T cd03301 149 PKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQVEAMTMADRIAVMNDGQIQQIG 213 (213)
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEecC
Confidence 999999999999999999999999988753 7899999999998875 9999999999999876
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. |
| >PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-38 Score=353.08 Aligned_cols=222 Identities=22% Similarity=0.432 Sum_probs=184.8
Q ss_pred cEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHH-hcc
Q 000984 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWI-RKK 461 (1198)
Q Consensus 383 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~-r~~ 461 (1198)
.++++|++++|+. .++|+|+||++++||+++|+||||||||||+++|.|+++|++|+|.++|.++...+.... |..
T Consensus 5 ~l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (255)
T PRK11300 5 LLSVSGLMMRFGG---LLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIARMG 81 (255)
T ss_pred eEEEeeEEEEECC---EEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCcceEEECCEECCCCCHHHHHhcC
Confidence 4899999999963 469999999999999999999999999999999999999999999999999988776554 456
Q ss_pred eEEEcCCCCCCcc-cHHHHHhcCCCCCCH----------HHH--HHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHH
Q 000984 462 IGLVSQEPVLFTG-SIKDNIAYGKDDATT----------EEI--RVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQK 528 (1198)
Q Consensus 462 i~~v~Q~~~l~~~-ti~~Ni~~~~~~~~~----------~~~--~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqk 528 (1198)
++|++|+|.+|.+ |++||+.++...... ... ..........+.++.+ |++........+||||||
T Consensus 82 i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--gl~~~~~~~~~~LS~G~~ 159 (255)
T PRK11300 82 VVRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERV--GLLEHANRQAGNLAYGQQ 159 (255)
T ss_pred eEEeccCcccCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhC--ChhhhhhCChhhCCHHHH
Confidence 9999999999975 999999975311000 000 0000111123344454 666677788889999999
Q ss_pred HHHhHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhC--CCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChh
Q 000984 529 QRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHS 605 (1198)
Q Consensus 529 qri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~ 605 (1198)
||++||||++.+|++|||||||++||+.+.+.+.+.|.++.+ ++|+|++||+++.+.. ||++++|++|++++.|+++
T Consensus 160 qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~ 239 (255)
T PRK11300 160 RRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMKLVMGISDRIYVVNQGTPLANGTPE 239 (255)
T ss_pred HHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEecCCHH
Confidence 999999999999999999999999999999999999988753 6899999999999865 9999999999999999998
Q ss_pred hHhc
Q 000984 606 KLVE 609 (1198)
Q Consensus 606 ~l~~ 609 (1198)
++..
T Consensus 240 ~~~~ 243 (255)
T PRK11300 240 EIRN 243 (255)
T ss_pred HHhh
Confidence 8764
|
|
| >PRK14252 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-38 Score=353.88 Aligned_cols=220 Identities=31% Similarity=0.461 Sum_probs=186.0
Q ss_pred cccEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCC-----CCCeEEECCeecC----
Q 000984 381 RGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDP-----QAGEVLIDGINLK---- 451 (1198)
Q Consensus 381 ~g~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~-----~~G~i~i~g~~~~---- 451 (1198)
.+.|+++|++++|+. +++|+|+||+|++||+++|+|+||||||||+++|+|+.+| ++|+|.++|.++.
T Consensus 14 ~~~l~~~~l~~~~~~---~~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~~~ 90 (265)
T PRK14252 14 QQKSEVNKLNFYYGG---YQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILSP 90 (265)
T ss_pred CceEEEEEEEEEECC---eeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCcccccccc
Confidence 456999999999963 3699999999999999999999999999999999999875 7999999998774
Q ss_pred CcCHHHHhcceEEEcCCCCCCcccHHHHHhcCCCC--CC-----HHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCC
Q 000984 452 EFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDD--AT-----TEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLS 524 (1198)
Q Consensus 452 ~~~~~~~r~~i~~v~Q~~~l~~~ti~~Ni~~~~~~--~~-----~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lS 524 (1198)
..+...++++++|++|+|.+|.+|++||+.++... .. ++++..+++.+++.+ ++....+.....||
T Consensus 91 ~~~~~~~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~l~~~~~~~~~~LS 163 (265)
T PRK14252 91 EVDPIEVRMRISMVFQKPNPFPKSIFENVAYGLRIRGVKRRSILEERVENALRNAALWD-------EVKDRLGDLAFNLS 163 (265)
T ss_pred ccCHHHHhccEEEEccCCcCCcchHHHHHHhHHHHcCCChHHHHHHHHHHHHHHcCCch-------hhhHHHhCCcccCC
Confidence 33456778899999999999999999999875311 11 233344444433322 33445667788999
Q ss_pred hHHHHHHhHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhCCCeEEEEecCcchhh-ccCEEEEEeCCEEEEecC
Q 000984 525 GGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKGT 603 (1198)
Q Consensus 525 gGqkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~-~~d~i~~l~~G~i~~~g~ 603 (1198)
||||||++||||++++|+++||||||++||+.+.+.+.+.++++.+++|+|+|||+++.+. .||+|++|++|++++.|+
T Consensus 164 ~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~tiiivth~~~~~~~~~d~i~~l~~G~i~~~g~ 243 (265)
T PRK14252 164 GGQQQRLCIARALATDPEILLFDEPTSALDPIATASIEELISDLKNKVTILIVTHNMQQAARVSDYTAYMYMGELIEFGA 243 (265)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCC
Confidence 9999999999999999999999999999999999999999998877789999999999986 499999999999999999
Q ss_pred hhhHhcC
Q 000984 604 HSKLVED 610 (1198)
Q Consensus 604 ~~~l~~~ 610 (1198)
++++..+
T Consensus 244 ~~~~~~~ 250 (265)
T PRK14252 244 TDTIFIK 250 (265)
T ss_pred HHHHHhC
Confidence 9998754
|
|
| >cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-39 Score=349.28 Aligned_cols=212 Identities=34% Similarity=0.527 Sum_probs=174.8
Q ss_pred EEEEeEEEEcCCCC-CCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCH---HHHh
Q 000984 384 IELRDVYFSYPARP-NEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQL---QWIR 459 (1198)
Q Consensus 384 i~~~~v~~~y~~~~-~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~---~~~r 459 (1198)
|+++|++++|+... ..++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.+. ..+|
T Consensus 2 l~~~~v~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (228)
T cd03257 2 LEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKIRR 81 (228)
T ss_pred eEEEeeeEeccCCCcceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccchhhHHHhh
Confidence 78999999996431 1269999999999999999999999999999999999999999999999999987763 5678
Q ss_pred cceEEEcCCCC--CC-cccHHHHHhcCCCC----CCHHHHHHHHHHhcHHHHHHhCCCCcc-chhcCCCCCCChHHHHHH
Q 000984 460 KKIGLVSQEPV--LF-TGSIKDNIAYGKDD----ATTEEIRVATELANAAKFIDKLPQGID-TLVGEHGTQLSGGQKQRI 531 (1198)
Q Consensus 460 ~~i~~v~Q~~~--l~-~~ti~~Ni~~~~~~----~~~~~~~~~~~~~~~~~~i~~l~~g~~-t~v~~~g~~lSgGqkqri 531 (1198)
++++|++|+|. ++ ..|+++|+.++... ..++....+. .+.++.+ |+. ........+||||||||+
T Consensus 82 ~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~-----~~~l~~~--~l~~~~~~~~~~~LS~G~~qrv 154 (228)
T cd03257 82 KEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEARKEAV-----LLLLVGV--GLPEEVLNRYPHELSGGQRQRV 154 (228)
T ss_pred ccEEEEecCchhhcCCcCCHHHHHHHHHHhccCCcHHHHHHHHH-----HHHHHHC--CCChhHhhCCchhcCHHHHHHH
Confidence 89999999993 44 57999999764211 1111111110 1233443 453 456677789999999999
Q ss_pred hHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhC--CCeEEEEecCcchhh-ccCEEEEEeCCEEEEec
Q 000984 532 AIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKG 602 (1198)
Q Consensus 532 ~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~-~~d~i~~l~~G~i~~~g 602 (1198)
+||||++.+|++|||||||++||+.+.+.+.+.|+++.+ ++|+|++||+++.+. .||+|++|++|++++.|
T Consensus 155 ~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g 228 (228)
T cd03257 155 AIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLGVVAKIADRVAVMYAGKIVEEG 228 (228)
T ss_pred HHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEeCCEEEecC
Confidence 999999999999999999999999999999999988764 789999999999987 59999999999998764
|
The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. |
| >PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-38 Score=346.27 Aligned_cols=212 Identities=25% Similarity=0.453 Sum_probs=179.8
Q ss_pred cEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcce
Q 000984 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKI 462 (1198)
Q Consensus 383 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i 462 (1198)
.|+++|+++.|++ .++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.+...+++++
T Consensus 7 ~i~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 83 (225)
T PRK10247 7 LLQLQNVGYLAGD---AKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYRQQV 83 (225)
T ss_pred eEEEeccEEeeCC---ceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEcCcCCHHHHHhcc
Confidence 5899999999963 4699999999999999999999999999999999999999999999999999888887788899
Q ss_pred EEEcCCCCCCcccHHHHHhcCCCCC-CHHHHHHHHHHhcHHHHHHhCCCCcc-chhcCCCCCCChHHHHHHhHHHhhccC
Q 000984 463 GLVSQEPVLFTGSIKDNIAYGKDDA-TTEEIRVATELANAAKFIDKLPQGID-TLVGEHGTQLSGGQKQRIAIARAILKD 540 (1198)
Q Consensus 463 ~~v~Q~~~l~~~ti~~Ni~~~~~~~-~~~~~~~~~~~~~~~~~i~~l~~g~~-t~v~~~g~~lSgGqkqri~lARal~~~ 540 (1198)
+|++|+|.+|..|++||+.++.... ..... ..+.+.++.+ |+. +.......+||||||||++||||++++
T Consensus 84 ~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~------~~~~~~l~~~--~l~~~~~~~~~~~LS~G~~qrv~laral~~~ 155 (225)
T PRK10247 84 SYCAQTPTLFGDTVYDNLIFPWQIRNQQPDP------AIFLDDLERF--ALPDTILTKNIAELSGGEKQRISLIRNLQFM 155 (225)
T ss_pred EEEecccccccccHHHHHHhHHhhcCCChHH------HHHHHHHHHc--CCChHHhcCCcccCCHHHHHHHHHHHHHhcC
Confidence 9999999999999999998642100 00000 1112334444 453 456777889999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHhHHHHHHHHHHHhC--CCeEEEEecCcchhhccCEEEEEe-CCEEEEecChh
Q 000984 541 PRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRNADMIAVIH-RGKIVEKGTHS 605 (1198)
Q Consensus 541 ~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~~~d~i~~l~-~G~i~~~g~~~ 605 (1198)
|+++||||||++||+.+.+.+.+.++++.+ ++|+|++||+++.+..||++++|+ ++..+++|+|+
T Consensus 156 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~~~~~~d~i~~l~~~~~~~~~~~~~ 223 (225)
T PRK10247 156 PKVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKDEINHADKVITLQPHAGEMQEARYE 223 (225)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECChHHHHhCCEEEEEecccchHhhhhhc
Confidence 999999999999999999999999988753 789999999999998899999995 66667788875
|
|
| >PRK11124 artP arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-38 Score=350.25 Aligned_cols=217 Identities=29% Similarity=0.499 Sum_probs=181.8
Q ss_pred cEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecC------CcCHH
Q 000984 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLK------EFQLQ 456 (1198)
Q Consensus 383 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~------~~~~~ 456 (1198)
.++++|+++.|+. +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++. .....
T Consensus 2 ~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 78 (242)
T PRK11124 2 SIQLNGINCFYGA---HQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIR 78 (242)
T ss_pred EEEEEeeEEEECC---eeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccccccchhhHH
Confidence 3789999999963 46999999999999999999999999999999999999999999999999873 12345
Q ss_pred HHhcceEEEcCCCCCCc-ccHHHHHhcCCC---CCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHh
Q 000984 457 WIRKKIGLVSQEPVLFT-GSIKDNIAYGKD---DATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIA 532 (1198)
Q Consensus 457 ~~r~~i~~v~Q~~~l~~-~ti~~Ni~~~~~---~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~ 532 (1198)
.+|++++|+||+|.+|. .|++||+.++.. ....++.. ..+.+.++.+ |++..+.....+||||||||++
T Consensus 79 ~~~~~i~~~~q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~-----~~~~~~l~~~--gl~~~~~~~~~~LS~G~~qrv~ 151 (242)
T PRK11124 79 ELRRNVGMVFQQYNLWPHLTVQQNLIEAPCRVLGLSKDQAL-----ARAEKLLERL--RLKPYADRFPLHLSGGQQQRVA 151 (242)
T ss_pred HHHhheEEEecCccccCCCcHHHHHHHHHHHHcCCCHHHHH-----HHHHHHHHHc--CChhhhhCChhhCCHHHHHHHH
Confidence 67889999999999886 599999974211 11222211 1223444444 6666667777899999999999
Q ss_pred HHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhC-CCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChhhHhc
Q 000984 533 IARAILKDPRILLLDEATSALDAESEKVVQEALDRIMV-NRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVE 609 (1198)
Q Consensus 533 lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~-~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~ 609 (1198)
||||++++|+++||||||++||+++...+.+.++++.+ ++|+|++||+++.+.. ||++++|++|++++.|+++++.+
T Consensus 152 laral~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~g~i~~~~~~~~~~~ 230 (242)
T PRK11124 152 IARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDASCFTQ 230 (242)
T ss_pred HHHHHhcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHhcC
Confidence 99999999999999999999999999999999988754 7899999999999865 99999999999999999988754
|
|
| >PRK14254 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-38 Score=355.39 Aligned_cols=219 Identities=34% Similarity=0.516 Sum_probs=182.9
Q ss_pred ccEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCC-----CCCCeEEECCeecCC--cC
Q 000984 382 GDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYD-----PQAGEVLIDGINLKE--FQ 454 (1198)
Q Consensus 382 g~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~-----~~~G~i~i~g~~~~~--~~ 454 (1198)
..|+++|++++|+. +++|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++.+ .+
T Consensus 38 ~~l~i~~l~~~~~~---~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~~~~ 114 (285)
T PRK14254 38 TVIEARDLNVFYGD---EQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADVD 114 (285)
T ss_pred ceEEEEEEEEEECC---EeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccc
Confidence 35899999999963 469999999999999999999999999999999999987 689999999999864 34
Q ss_pred HHHHhcceEEEcCCCCCCcccHHHHHhcCCCC--CC---HHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHH
Q 000984 455 LQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDD--AT---TEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQ 529 (1198)
Q Consensus 455 ~~~~r~~i~~v~Q~~~l~~~ti~~Ni~~~~~~--~~---~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkq 529 (1198)
...+|++++|++|++.+|..|++||+.++... .. +++++++++..++.+. +....+....+|||||||
T Consensus 115 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-------i~~~~~~~~~~LSgGe~q 187 (285)
T PRK14254 115 PVALRRRIGMVFQKPNPFPKSIYDNVAYGLKIQGYDGDIDERVEESLRRAALWDE-------VKDQLDSSGLDLSGGQQQ 187 (285)
T ss_pred hHhhhccEEEEecCCccCcCCHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCch-------hHHHHhCCcccCCHHHHH
Confidence 55678899999999999988999999864211 11 2233334433332211 123456677899999999
Q ss_pred HHhHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhCCCeEEEEecCcchhhc-cCEEE-EEeCCEEEEecChhhH
Q 000984 530 RIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRN-ADMIA-VIHRGKIVEKGTHSKL 607 (1198)
Q Consensus 530 ri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~-~d~i~-~l~~G~i~~~g~~~~l 607 (1198)
|++||||++++|++|||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+.. ||+++ +|++|+|++.|+++++
T Consensus 188 rv~LAraL~~~p~lLLLDEPts~LD~~~~~~l~~~L~~~~~~~tiii~tH~~~~i~~~~dri~v~l~~G~i~~~g~~~~~ 267 (285)
T PRK14254 188 RLCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAEEYTVVIVTHNMQQAARISDKTAVFLTGGELVEFDDTDKI 267 (285)
T ss_pred HHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEeeCCEEEEeCCHHHH
Confidence 999999999999999999999999999999999999988777899999999999875 99975 5799999999999988
Q ss_pred hcC
Q 000984 608 VED 610 (1198)
Q Consensus 608 ~~~ 610 (1198)
.++
T Consensus 268 ~~~ 270 (285)
T PRK14254 268 FEN 270 (285)
T ss_pred HhC
Confidence 654
|
|
| >PRK14260 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-38 Score=353.99 Aligned_cols=219 Identities=32% Similarity=0.486 Sum_probs=184.2
Q ss_pred ccEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCC-----CCCeEEECCeecCC--cC
Q 000984 382 GDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDP-----QAGEVLIDGINLKE--FQ 454 (1198)
Q Consensus 382 g~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~-----~~G~i~i~g~~~~~--~~ 454 (1198)
+.++++|++++|++ .++|+|+||++++||+++|+|+||||||||+++|+|+++| ++|+|.++|.++.+ .+
T Consensus 6 ~~l~~~~l~~~~~~---~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~ 82 (259)
T PRK14260 6 PAIKVKDLSFYYNT---SKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRIN 82 (259)
T ss_pred ceEEEEEEEEEECC---eEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEeccccccc
Confidence 36899999999963 4599999999999999999999999999999999999985 48999999998854 44
Q ss_pred HHHHhcceEEEcCCCCCCcccHHHHHhcCCCC---CCH----HHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHH
Q 000984 455 LQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDD---ATT----EEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQ 527 (1198)
Q Consensus 455 ~~~~r~~i~~v~Q~~~l~~~ti~~Ni~~~~~~---~~~----~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGq 527 (1198)
...++.+++|++|+|.+|..|++||+.++... ..+ +.+.++++.+++.+++ .......+..|||||
T Consensus 83 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l-------~~~~~~~~~~LS~G~ 155 (259)
T PRK14260 83 INRLRRQIGMVFQRPNPFPMSIYENVAYGVRISAKLPQADLDEIVESALKGAALWQEV-------KDKLNKSALGLSGGQ 155 (259)
T ss_pred hHhhhhheEEEecccccCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchh-------hhHhcCCcccCCHHH
Confidence 56778899999999999999999999865211 111 2233444444443222 223456677899999
Q ss_pred HHHHhHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhCCCeEEEEecCcchhhc-cCEEEEEe-----CCEEEEe
Q 000984 528 KQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRN-ADMIAVIH-----RGKIVEK 601 (1198)
Q Consensus 528 kqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~-~d~i~~l~-----~G~i~~~ 601 (1198)
|||++||||++++|+++||||||++||+.+...+.+.|+++.+++|+|++||+++.+.. ||++++|+ +|++++.
T Consensus 156 ~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~i~~~~d~i~~l~~~~~~~G~i~~~ 235 (259)
T PRK14260 156 QQRLCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHSLRSELTIAIVTHNMQQATRVSDFTAFFSTDESRIGQMVEF 235 (259)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCeEEEEeccCCCCceEEEe
Confidence 99999999999999999999999999999999999999988777999999999999865 99999997 5999999
Q ss_pred cChhhHhcC
Q 000984 602 GTHSKLVED 610 (1198)
Q Consensus 602 g~~~~l~~~ 610 (1198)
|+++++.+.
T Consensus 236 ~~~~~~~~~ 244 (259)
T PRK14260 236 GVTTQIFSN 244 (259)
T ss_pred CCHHHHhcC
Confidence 999998754
|
|
| >TIGR02673 FtsE cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-39 Score=346.23 Aligned_cols=201 Identities=30% Similarity=0.488 Sum_probs=169.4
Q ss_pred EEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHH---HHhc
Q 000984 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQ---WIRK 460 (1198)
Q Consensus 384 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~---~~r~ 460 (1198)
++++|++++|+. +.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+++.. .+++
T Consensus 2 l~~~~l~~~~~~--~~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 79 (214)
T TIGR02673 2 IEFHNVSKAYPG--GVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLLRR 79 (214)
T ss_pred EEEEeeeEEeCC--CceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHh
Confidence 789999999952 24699999999999999999999999999999999999999999999999999876543 4678
Q ss_pred ceEEEcCCCCCCc-ccHHHHHhcCCCC--CC----HHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhH
Q 000984 461 KIGLVSQEPVLFT-GSIKDNIAYGKDD--AT----TEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAI 533 (1198)
Q Consensus 461 ~i~~v~Q~~~l~~-~ti~~Ni~~~~~~--~~----~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~l 533 (1198)
+++|++|+|.+|. .|++||+.++... .. ++++++.++..++.+ .......+||||||||++|
T Consensus 80 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LS~G~~qrl~l 148 (214)
T TIGR02673 80 RIGVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRRVGAALRQVGLEH-----------KADAFPEQLSGGEQQRVAI 148 (214)
T ss_pred heEEEecChhhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChh-----------hhhCChhhCCHHHHHHHHH
Confidence 8999999999885 6999999875211 11 223344444444333 3334446899999999999
Q ss_pred HHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh-CCCeEEEEecCcchhhc-cCEEEEEeCCE
Q 000984 534 ARAILKDPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRN-ADMIAVIHRGK 597 (1198)
Q Consensus 534 ARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~ 597 (1198)
|||++++|+++||||||++||+.+...+.+.++++. +++|+|++||+++.+.. ||+|++|++|+
T Consensus 149 a~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~ 214 (214)
T TIGR02673 149 ARAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNKRGTTVIVATHDLSLVDRVAHRVIILDDGR 214 (214)
T ss_pred HHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEecCCC
Confidence 999999999999999999999999999999998875 47899999999999876 99999999985
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein. |
| >PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-38 Score=355.75 Aligned_cols=217 Identities=28% Similarity=0.465 Sum_probs=178.8
Q ss_pred EEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecC--CcCHHHHhcc
Q 000984 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLK--EFQLQWIRKK 461 (1198)
Q Consensus 384 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~--~~~~~~~r~~ 461 (1198)
|+++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|.|+++|++|+|.++|.++. +.+...+|++
T Consensus 2 l~~~~l~~~~~~---~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~ 78 (271)
T PRK13638 2 LATSDLWFRYQD---EPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLALRQQ 78 (271)
T ss_pred eEEEEEEEEcCC---cccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCccEEEECCEEcccccCCHHHHHhh
Confidence 789999999963 46999999999999999999999999999999999999999999999999985 3345567889
Q ss_pred eEEEcCCCC--CCcccHHHHHhcCCC--CCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhh
Q 000984 462 IGLVSQEPV--LFTGSIKDNIAYGKD--DATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAI 537 (1198)
Q Consensus 462 i~~v~Q~~~--l~~~ti~~Ni~~~~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal 537 (1198)
++|++|+|. ++..|+.+|+.++.. ..+.++..+. +.+.++.+ |++........+||||||||++|||||
T Consensus 79 i~~v~q~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-----~~~~l~~~--~l~~~~~~~~~~LSgG~~qrl~laraL 151 (271)
T PRK13638 79 VATVFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEITRR-----VDEALTLV--DAQHFRHQPIQCLSHGQKKRVAIAGAL 151 (271)
T ss_pred eEEEeeChhhccccccHHHHHHHHHHHcCCCHHHHHHH-----HHHHHHHc--CCHhHhcCCchhCCHHHHHHHHHHHHH
Confidence 999999985 567899999987421 1122222111 11222222 333334455678999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh-CCCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChhhHhcC
Q 000984 538 LKDPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVED 610 (1198)
Q Consensus 538 ~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 610 (1198)
+.+|++|||||||++||+.+.+.+.+.|+++. +++|+|++||+++.+.. ||++++|++|++++.|+++++...
T Consensus 152 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 226 (271)
T PRK13638 152 VLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDIDLIYEISDAVYVLRQGQILTHGAPGEVFAC 226 (271)
T ss_pred HcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 99999999999999999999999999998875 47899999999999865 999999999999999999888654
|
|
| >PRK13536 nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-38 Score=364.19 Aligned_cols=217 Identities=27% Similarity=0.493 Sum_probs=180.7
Q ss_pred cEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcce
Q 000984 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKI 462 (1198)
Q Consensus 383 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i 462 (1198)
.|+++|++++|++ ..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.. ...|+++
T Consensus 41 ~i~i~nl~k~y~~---~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~~~~~-~~~~~~i 116 (340)
T PRK13536 41 AIDLAGVSKSYGD---KAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARA-RLARARI 116 (340)
T ss_pred eEEEEEEEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEECCcch-HHHhccE
Confidence 5999999999963 46999999999999999999999999999999999999999999999999987654 4678899
Q ss_pred EEEcCCCCCC-cccHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhhcc
Q 000984 463 GLVSQEPVLF-TGSIKDNIAYGKDD--ATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILK 539 (1198)
Q Consensus 463 ~~v~Q~~~l~-~~ti~~Ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal~~ 539 (1198)
+|+||++.++ ..|++||+.+.... .+..+..+.++ +.++.+ |+.........+||||||||++|||||++
T Consensus 117 g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~-----~ll~~~--~L~~~~~~~~~~LS~G~kqrv~lA~aL~~ 189 (340)
T PRK13536 117 GVVPQFDNLDLEFTVRENLLVFGRYFGMSTREIEAVIP-----SLLEFA--RLESKADARVSDLSGGMKRRLTLARALIN 189 (340)
T ss_pred EEEeCCccCCCCCcHHHHHHHHHHHcCCCHHHHHHHHH-----HHHHHc--CCchhhCCChhhCCHHHHHHHHHHHHHhc
Confidence 9999999987 57999999853211 12222222111 122221 33333444556899999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHhHHHHHHHHHHHh-CCCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChhhHhcC
Q 000984 540 DPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVED 610 (1198)
Q Consensus 540 ~~~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 610 (1198)
+|+++||||||++||+.+.+.+.+.|+++. +++|+|++||+++.+.. ||+|++|++|++++.|+++++..+
T Consensus 190 ~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~~g~tilisSH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~~~ 262 (340)
T PRK13536 190 DPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLEAGRKIAEGRPHALIDE 262 (340)
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhh
Confidence 999999999999999999999999998875 47999999999999865 999999999999999999998654
|
|
| >PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-38 Score=362.98 Aligned_cols=231 Identities=22% Similarity=0.396 Sum_probs=186.5
Q ss_pred cEEEEeEEEEcCCCC-CCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCC---CCeEEECCeecCCcCHHHH
Q 000984 383 DIELRDVYFSYPARP-NEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQ---AGEVLIDGINLKEFQLQWI 458 (1198)
Q Consensus 383 ~i~~~~v~~~y~~~~-~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~---~G~i~i~g~~~~~~~~~~~ 458 (1198)
.++++|++++|+... ...+++|+||+|++||+++|+|+||||||||+++|+|+++|. +|+|.+||.++..++..++
T Consensus 12 ~L~i~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~~~~ 91 (330)
T PRK09473 12 LLDVKDLRVTFSTPDGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEKEL 91 (330)
T ss_pred eEEEeCeEEEEecCCCCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCCHHHH
Confidence 489999999996432 246999999999999999999999999999999999999996 9999999999998887665
Q ss_pred h----cceEEEcCCCC--CCc-ccHHHHHhcCC---CCCCHHHH-HHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHH
Q 000984 459 R----KKIGLVSQEPV--LFT-GSIKDNIAYGK---DDATTEEI-RVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQ 527 (1198)
Q Consensus 459 r----~~i~~v~Q~~~--l~~-~ti~~Ni~~~~---~~~~~~~~-~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGq 527 (1198)
+ ++|+||+|+|. ++. .|+.+|+.... ...+.++. .++.+. .+.+ .+|++. ..++.....|||||
T Consensus 92 ~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~---L~~v-gL~~~~-~~~~~~p~~LSgG~ 166 (330)
T PRK09473 92 NKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRM---LDAV-KMPEAR-KRMKMYPHEFSGGM 166 (330)
T ss_pred HHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHH---HHHc-CCCChH-HHhcCCcccCCHHH
Confidence 3 47999999993 443 57777764321 11222222 222221 1111 234332 33577888999999
Q ss_pred HHHHhHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhC--CCeEEEEecCcchhhc-cCEEEEEeCCEEEEecCh
Q 000984 528 KQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTH 604 (1198)
Q Consensus 528 kqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~ 604 (1198)
|||++|||||+.+|++||+||||++||+.+...+.+.|+++.+ +.|+|+|||+++.+.. ||+|+||++|+|+|.|++
T Consensus 167 ~QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~~Dri~vm~~G~ive~g~~ 246 (330)
T PRK09473 167 RQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLGVVAGICDKVLVMYAGRTMEYGNA 246 (330)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEECCH
Confidence 9999999999999999999999999999999999999988754 7899999999999875 999999999999999999
Q ss_pred hhHhcCCCchhHHH
Q 000984 605 SKLVEDPEGAYSQL 618 (1198)
Q Consensus 605 ~~l~~~~~~~~~~~ 618 (1198)
+++.+++...|.+.
T Consensus 247 ~~i~~~p~~pyt~~ 260 (330)
T PRK09473 247 RDVFYQPSHPYSIG 260 (330)
T ss_pred HHHHhCCCCHHHHH
Confidence 99998766666654
|
|
| >PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-38 Score=362.38 Aligned_cols=228 Identities=25% Similarity=0.343 Sum_probs=182.4
Q ss_pred cEEEEeEEEEcCCCCC-CccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCC----CCCCeEEECCeecCCcCHHH
Q 000984 383 DIELRDVYFSYPARPN-EQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYD----PQAGEVLIDGINLKEFQLQW 457 (1198)
Q Consensus 383 ~i~~~~v~~~y~~~~~-~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~----~~~G~i~i~g~~~~~~~~~~ 457 (1198)
.++++|++++|+.+.. ..+|+||||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|.|+.+++.+.
T Consensus 3 ~L~v~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~~ 82 (326)
T PRK11022 3 LLNVDKLSVHFGDESAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKE 82 (326)
T ss_pred eEEEeCeEEEECCCCccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHHH
Confidence 3789999999975322 369999999999999999999999999999999999997 48999999999999888766
Q ss_pred Hh----cceEEEcCCCC--CCc-ccHHHHHhcC---CCCCCH----HHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCC
Q 000984 458 IR----KKIGLVSQEPV--LFT-GSIKDNIAYG---KDDATT----EEIRVATELANAAKFIDKLPQGIDTLVGEHGTQL 523 (1198)
Q Consensus 458 ~r----~~i~~v~Q~~~--l~~-~ti~~Ni~~~---~~~~~~----~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~l 523 (1198)
++ +.|+||+|+|. +.. -|+.+++... ...... +++.+.++..++.+. ....+....+|
T Consensus 83 ~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~gL~~~--------~~~l~~~p~~L 154 (326)
T PRK11022 83 RRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDP--------ASRLDVYPHQL 154 (326)
T ss_pred HHHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCCh--------HHHHhCCchhC
Confidence 54 36999999995 332 3565554321 101121 223333333332110 13456777899
Q ss_pred ChHHHHHHhHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhC--CCeEEEEecCcchhh-ccCEEEEEeCCEEEE
Q 000984 524 SGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVR-NADMIAVIHRGKIVE 600 (1198)
Q Consensus 524 SgGqkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~-~~d~i~~l~~G~i~~ 600 (1198)
|||||||++|||||+.+|++||+||||++||+.+...+.+.|+++.+ +.|+|+|||+++.+. .||+|++|++|+|+|
T Consensus 155 SgGq~QRv~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl~~~~~~adri~vm~~G~ive 234 (326)
T PRK11022 155 SGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLALVAEAAHKIIVMYAGQVVE 234 (326)
T ss_pred CHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999999988754 789999999999985 599999999999999
Q ss_pred ecChhhHhcCCCchhHHH
Q 000984 601 KGTHSKLVEDPEGAYSQL 618 (1198)
Q Consensus 601 ~g~~~~l~~~~~~~~~~~ 618 (1198)
.|+++++.+++...|.+.
T Consensus 235 ~g~~~~~~~~p~hpyt~~ 252 (326)
T PRK11022 235 TGKAHDIFRAPRHPYTQA 252 (326)
T ss_pred ECCHHHHhhCCCChHHHH
Confidence 999999998766666544
|
|
| >cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-39 Score=345.48 Aligned_cols=205 Identities=37% Similarity=0.654 Sum_probs=171.3
Q ss_pred EEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcceEE
Q 000984 385 ELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGL 464 (1198)
Q Consensus 385 ~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~~ 464 (1198)
+++|++++|+.. .+++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.+...+|++++|
T Consensus 1 ~~~~l~~~~~~~-~~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 79 (211)
T cd03225 1 ELKNLSFSYPDG-ARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRRKVGL 79 (211)
T ss_pred CceeEEEecCCC-CeeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccCCHHHHHhhceE
Confidence 368999999642 2469999999999999999999999999999999999999999999999999988777788899999
Q ss_pred EcCCCC--CCcccHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhhccC
Q 000984 465 VSQEPV--LFTGSIKDNIAYGKDD--ATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKD 540 (1198)
Q Consensus 465 v~Q~~~--l~~~ti~~Ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal~~~ 540 (1198)
++|+|. ++..|++||+.++... .+..+... .+.+.++.+ |++.........||||||||++||||++++
T Consensus 80 ~~q~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LSgG~~qrv~laral~~~ 152 (211)
T cd03225 80 VFQNPDDQFFGPTVEEEVAFGLENLGLPEEEIEE-----RVEEALELV--GLEGLRDRSPFTLSGGQKQRVAIAGVLAMD 152 (211)
T ss_pred EecChhhhcCCCcHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHHc--CcHhhhcCCcccCCHHHHHHHHHHHHHhcC
Confidence 999983 6688999999875321 12221111 112233333 455555666789999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHhHHHHHHHHHHHhC-CCeEEEEecCcchhhc-cCEEEEEeCCE
Q 000984 541 PRILLLDEATSALDAESEKVVQEALDRIMV-NRTTVIVAHRLSTVRN-ADMIAVIHRGK 597 (1198)
Q Consensus 541 ~~illlDe~ts~lD~~~~~~i~~~i~~~~~-~~t~i~itH~~~~~~~-~d~i~~l~~G~ 597 (1198)
|+++||||||++||+.+.+.+.+.|+++.+ ++|+|++||+++.+.. ||+|++|++|+
T Consensus 153 p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~G~ 211 (211)
T cd03225 153 PDILLLDEPTAGLDPAGRRELLELLKKLKAEGKTIIIVTHDLDLLLELADRVIVLEDGK 211 (211)
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCC
Confidence 999999999999999999999999988754 7899999999999887 99999999985
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >PRK14272 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-38 Score=351.68 Aligned_cols=221 Identities=30% Similarity=0.481 Sum_probs=181.8
Q ss_pred cEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCC-----CCeEEECCeecCC--cCH
Q 000984 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQ-----AGEVLIDGINLKE--FQL 455 (1198)
Q Consensus 383 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~-----~G~i~i~g~~~~~--~~~ 455 (1198)
.++++|++++|++ +++|+|+||+|++||+++|+|+||||||||+++|.|+++|. +|+|.++|.++.+ .+.
T Consensus 4 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~ 80 (252)
T PRK14272 4 LLSAQDVNIYYGD---KQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDP 80 (252)
T ss_pred EEEEeeeEEEECC---EEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCccCH
Confidence 3789999999963 46999999999999999999999999999999999999874 8999999999865 344
Q ss_pred HHHhcceEEEcCCCCCCc-ccHHHHHhcCCCC--C-CHHHHHHH----HHHhcHHHHHHhCCCCccchhcCCCCCCChHH
Q 000984 456 QWIRKKIGLVSQEPVLFT-GSIKDNIAYGKDD--A-TTEEIRVA----TELANAAKFIDKLPQGIDTLVGEHGTQLSGGQ 527 (1198)
Q Consensus 456 ~~~r~~i~~v~Q~~~l~~-~ti~~Ni~~~~~~--~-~~~~~~~~----~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGq 527 (1198)
..+|+.++|++|+|.+|. .|++||+.++... . .+++..+. ++..++.+ ++.........+|||||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~l~~~~~~~~~~LS~G~ 153 (252)
T PRK14272 81 VAMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALWD-------EVKDRLKTPATGLSGGQ 153 (252)
T ss_pred HHhhceeEEEeccCccCcCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCcch-------hhhhhhcCCcccCCHHH
Confidence 567889999999999887 5999999864321 1 22222221 11122111 12223345567899999
Q ss_pred HHHHhHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhCCCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChhh
Q 000984 528 KQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSK 606 (1198)
Q Consensus 528 kqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~ 606 (1198)
|||++||||++++|++|||||||++||+.+.+.+.+.++++.+++|+|++||+++.+.. ||+|++|++|++++.|++++
T Consensus 154 ~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~ 233 (252)
T PRK14272 154 QQRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLKKVTTIIIVTHNMHQAARVSDTTSFFLVGDLVEHGPTDQ 233 (252)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999999988777999999999999875 99999999999999999999
Q ss_pred HhcCCCc
Q 000984 607 LVEDPEG 613 (1198)
Q Consensus 607 l~~~~~~ 613 (1198)
+..++..
T Consensus 234 ~~~~~~~ 240 (252)
T PRK14272 234 LFTNPRD 240 (252)
T ss_pred HHhCcCc
Confidence 8765433
|
|
| >PRK14275 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-38 Score=357.55 Aligned_cols=221 Identities=30% Similarity=0.462 Sum_probs=182.8
Q ss_pred ccEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCC-----CCCCeEEECCeecCCc--C
Q 000984 382 GDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYD-----PQAGEVLIDGINLKEF--Q 454 (1198)
Q Consensus 382 g~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~-----~~~G~i~i~g~~~~~~--~ 454 (1198)
..|+++|++++|+. .++|+|+||+|++||+++|+||||||||||+++|.|+.+ |++|+|.+||.++... +
T Consensus 38 ~~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~~~~ 114 (286)
T PRK14275 38 PHVVAKNFSIYYGE---FEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTD 114 (286)
T ss_pred eEEEEeeeEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhcccc
Confidence 35899999999963 359999999999999999999999999999999999864 4999999999988643 3
Q ss_pred HHHHhcceEEEcCCCCCCcccHHHHHhcCCCC--C-CH----HHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHH
Q 000984 455 LQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDD--A-TT----EEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQ 527 (1198)
Q Consensus 455 ~~~~r~~i~~v~Q~~~l~~~ti~~Ni~~~~~~--~-~~----~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGq 527 (1198)
...+|++++|++|+|.+|..|++||+.++... . +. +++.++++..++.+ ++..........|||||
T Consensus 115 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~l~~~~~~~~~~LSgGq 187 (286)
T PRK14275 115 EVLLRKKIGMVFQKPNPFPKSIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWD-------EVSDRLDKNALGLSGGQ 187 (286)
T ss_pred hHHhhhcEEEECCCCCCCccCHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHhCCcc-------chhhHhhCChhhCCHHH
Confidence 34578899999999999988999999875321 1 11 12223333332211 11233456678899999
Q ss_pred HHHHhHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhCCCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChhh
Q 000984 528 KQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSK 606 (1198)
Q Consensus 528 kqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~ 606 (1198)
|||++||||++.+|++|||||||++||+++.+.+.+.++++.+++|+|++||+++.+.. ||++++|++|++++.|++++
T Consensus 188 ~qrv~LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~~~tvIivsH~~~~~~~~~d~i~~L~~G~i~~~g~~~~ 267 (286)
T PRK14275 188 QQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRGSYTIMIVTHNMQQASRVSDYTMFFYEGVLVEHAPTAQ 267 (286)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999999988777899999999999865 99999999999999999999
Q ss_pred HhcCCC
Q 000984 607 LVEDPE 612 (1198)
Q Consensus 607 l~~~~~ 612 (1198)
+.+++.
T Consensus 268 ~~~~~~ 273 (286)
T PRK14275 268 LFTNPK 273 (286)
T ss_pred HHhCCC
Confidence 876533
|
|
| >PRK13548 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-38 Score=350.93 Aligned_cols=213 Identities=27% Similarity=0.481 Sum_probs=182.6
Q ss_pred cEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcce
Q 000984 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKI 462 (1198)
Q Consensus 383 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i 462 (1198)
.|+++|++++|+. +++|+|+||++++|++++|+|+||||||||+++|+|+++|++|+|.++|.++...+...+++++
T Consensus 2 ~l~~~~l~~~~~~---~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~~g~~~~~~~~~~~~~~i 78 (258)
T PRK13548 2 MLEARNLSVRLGG---RTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAELARRR 78 (258)
T ss_pred eEEEEeEEEEeCC---eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcccCCHHHhhhhe
Confidence 3789999999963 4699999999999999999999999999999999999999999999999999888877788899
Q ss_pred EEEcCCCCC-CcccHHHHHhcCCCCC--C----HHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHH
Q 000984 463 GLVSQEPVL-FTGSIKDNIAYGKDDA--T----TEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIAR 535 (1198)
Q Consensus 463 ~~v~Q~~~l-~~~ti~~Ni~~~~~~~--~----~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lAR 535 (1198)
+|++|++.+ +..|++||+.++.... . ++++.++++.. |++.........||||||||++|||
T Consensus 79 ~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~-----------~l~~~~~~~~~~LSgGe~qrv~la~ 147 (258)
T PRK13548 79 AVLPQHSSLSFPFTVEEVVAMGRAPHGLSRAEDDALVAAALAQV-----------DLAHLAGRDYPQLSGGEQQRVQLAR 147 (258)
T ss_pred EEEccCCcCCCCCCHHHHHHhhhcccCCCcHHHHHHHHHHHHHc-----------CCHhHhcCCcccCCHHHHHHHHHHH
Confidence 999999987 5789999998753211 1 11223333333 4444455567799999999999999
Q ss_pred hhc------cCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh--CCCeEEEEecCcchhh-ccCEEEEEeCCEEEEecChhh
Q 000984 536 AIL------KDPRILLLDEATSALDAESEKVVQEALDRIM--VNRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKGTHSK 606 (1198)
Q Consensus 536 al~------~~~~illlDe~ts~lD~~~~~~i~~~i~~~~--~~~t~i~itH~~~~~~-~~d~i~~l~~G~i~~~g~~~~ 606 (1198)
|++ .+|+++||||||++||+.+.+.+.+.|+++. +++|+|++||+++.+. .||+|++|++|++++.|++++
T Consensus 148 al~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~ 227 (258)
T PRK13548 148 VLAQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLNLAARYADRIVLLHQGRLVADGTPAE 227 (258)
T ss_pred HHhcccccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhcCEEEEEECCEEEeeCCHHH
Confidence 999 5999999999999999999999999998875 4789999999999886 599999999999999999988
Q ss_pred Hhc
Q 000984 607 LVE 609 (1198)
Q Consensus 607 l~~ 609 (1198)
+..
T Consensus 228 ~~~ 230 (258)
T PRK13548 228 VLT 230 (258)
T ss_pred HhC
Confidence 864
|
|
| >PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-38 Score=355.46 Aligned_cols=218 Identities=33% Similarity=0.557 Sum_probs=180.5
Q ss_pred EEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCC--cCHHHHhcc
Q 000984 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKE--FQLQWIRKK 461 (1198)
Q Consensus 384 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~--~~~~~~r~~ 461 (1198)
|+++|++++|+. ..++|+|+||+|++||+++|+||||||||||+++|+|+++|.+|+|.++|.++.. .+...++++
T Consensus 2 l~~~~l~~~~~~--~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 79 (275)
T PRK13639 2 LETRDLKYSYPD--GTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLEVRKT 79 (275)
T ss_pred EEEEEEEEEeCC--CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEECccccchHHHHHhh
Confidence 689999999963 2469999999999999999999999999999999999999999999999999852 234567889
Q ss_pred eEEEcCCC--CCCcccHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhh
Q 000984 462 IGLVSQEP--VLFTGSIKDNIAYGKDD--ATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAI 537 (1198)
Q Consensus 462 i~~v~Q~~--~l~~~ti~~Ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal 537 (1198)
|+|++|+| .+|..|++||+.++... .+.++..+. +.+.++.+ |++........+||||||||++||||+
T Consensus 80 i~~v~q~~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~-----~~~~l~~~--~L~~~~~~~~~~LS~Gq~qrv~laral 152 (275)
T PRK13639 80 VGIVFQNPDDQLFAPTVEEDVAFGPLNLGLSKEEVEKR-----VKEALKAV--GMEGFENKPPHHLSGGQKKRVAIAGIL 152 (275)
T ss_pred eEEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHH-----HHHHHHHC--CCchhhcCChhhCCHHHHHHHHHHHHH
Confidence 99999998 57889999999875321 122221111 11222322 343334455678999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhC-CCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChhhHhcC
Q 000984 538 LKDPRILLLDEATSALDAESEKVVQEALDRIMV-NRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVED 610 (1198)
Q Consensus 538 ~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~-~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 610 (1198)
+.+|+++||||||++||+.+.+.+.+.+.++.+ ++|+|++||+++.+.. ||+|++|++|++++.|+++++...
T Consensus 153 ~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~~til~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 227 (275)
T PRK13639 153 AMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHDVDLVPVYADKVYVMSDGKIIKEGTPKEVFSD 227 (275)
T ss_pred hcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 999999999999999999999999999988754 7899999999999874 999999999999999999998754
|
|
| >TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-38 Score=360.44 Aligned_cols=216 Identities=22% Similarity=0.440 Sum_probs=184.8
Q ss_pred EEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcceE
Q 000984 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIG 463 (1198)
Q Consensus 384 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~ 463 (1198)
++++|++++|++ +.+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. ....+|++++
T Consensus 3 l~~~~l~~~~~~---~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g~~~~~-~~~~~~~~ig 78 (301)
T TIGR03522 3 IRVSSLTKLYGT---QNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQ-NPKEVQRNIG 78 (301)
T ss_pred EEEEEEEEEECC---EEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccc-ChHHHHhceE
Confidence 789999999963 469999999999999999999999999999999999999999999999999876 4457788999
Q ss_pred EEcCCCCCCcc-cHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhhccC
Q 000984 464 LVSQEPVLFTG-SIKDNIAYGKDD--ATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKD 540 (1198)
Q Consensus 464 ~v~Q~~~l~~~-ti~~Ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal~~~ 540 (1198)
|+||+|.++.. |++||+.+.... ...++..+ .+.+.++.+ |++........+||||||||++||||++++
T Consensus 79 ~~~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--gl~~~~~~~~~~LS~G~~qrv~la~al~~~ 151 (301)
T TIGR03522 79 YLPEHNPLYLDMYVREYLQFIAGIYGMKGQLLKQ-----RVEEMIELV--GLRPEQHKKIGQLSKGYRQRVGLAQALIHD 151 (301)
T ss_pred EecCCCCCCCCCcHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHHC--CCchHhcCchhhCCHHHHHHHHHHHHHhcC
Confidence 99999999865 999999753211 12222111 112334444 566666777789999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHhHHHHHHHHHHHhCCCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChhhHhcC
Q 000984 541 PRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVED 610 (1198)
Q Consensus 541 ~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 610 (1198)
|+++||||||++||+.+.+.+.+.++++.+++|+|++||+++.+.. ||+|++|++|++++.|+++++.+.
T Consensus 152 p~lliLDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sH~l~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 222 (301)
T TIGR03522 152 PKVLILDEPTTGLDPNQLVEIRNVIKNIGKDKTIILSTHIMQEVEAICDRVIIINKGKIVADKKLDELSAA 222 (301)
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHHh
Confidence 9999999999999999999999999988778999999999998876 999999999999999999998653
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. |
| >PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-38 Score=351.97 Aligned_cols=214 Identities=27% Similarity=0.443 Sum_probs=183.9
Q ss_pred ccEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcc
Q 000984 382 GDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKK 461 (1198)
Q Consensus 382 g~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~ 461 (1198)
..|+++|++++|++ +.+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.
T Consensus 6 ~~l~i~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 82 (265)
T PRK10253 6 ARLRGEQLTLGYGK---YTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVARR 82 (265)
T ss_pred cEEEEEEEEEEECC---EEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEEhhhCCHHHHhhh
Confidence 46999999999963 469999999999999999999999999999999999999999999999999988888888889
Q ss_pred eEEEcCCCCCC-cccHHHHHhcCC-CC------CCH---HHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHH
Q 000984 462 IGLVSQEPVLF-TGSIKDNIAYGK-DD------ATT---EEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQR 530 (1198)
Q Consensus 462 i~~v~Q~~~l~-~~ti~~Ni~~~~-~~------~~~---~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqr 530 (1198)
++|++|++.+| ..|++||+.++. +. ..+ +++.++++.. |++.........||||||||
T Consensus 83 i~~v~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-----------~l~~~~~~~~~~LS~Gq~qr 151 (265)
T PRK10253 83 IGLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQAT-----------GITHLADQSVDTLSGGQRQR 151 (265)
T ss_pred eEEeeccCcCCCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHc-----------CCHHHhcCCcccCChHHHHH
Confidence 99999999887 479999998752 11 011 2233333333 44444556678999999999
Q ss_pred HhHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhC--CCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChhhH
Q 000984 531 IAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKL 607 (1198)
Q Consensus 531 i~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l 607 (1198)
++||||++++|+++||||||++||+.+.+.+.+.|.++.+ ++|+|++||+++.+.. ||+|++|++|++++.|+++++
T Consensus 152 v~laral~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 231 (265)
T PRK10253 152 AWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLNQACRYASHLIALREGKIVAQGAPKEI 231 (265)
T ss_pred HHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999988753 6899999999998765 999999999999999999887
Q ss_pred hc
Q 000984 608 VE 609 (1198)
Q Consensus 608 ~~ 609 (1198)
..
T Consensus 232 ~~ 233 (265)
T PRK10253 232 VT 233 (265)
T ss_pred hh
Confidence 64
|
|
| >cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-38 Score=347.80 Aligned_cols=211 Identities=36% Similarity=0.560 Sum_probs=179.6
Q ss_pred EEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcceE
Q 000984 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIG 463 (1198)
Q Consensus 384 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~ 463 (1198)
|+++|++++|+. +++++|+||++++||+++|+|+||||||||+++|+|+++|.+|+|.++|+++.+.+.. ++.++
T Consensus 1 l~~~~l~~~~~~---~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~--~~~i~ 75 (232)
T cd03300 1 IELENVSKFYGG---FVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLPPH--KRPVN 75 (232)
T ss_pred CEEEeEEEEeCC---eeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCChh--hcceE
Confidence 468999999963 4699999999999999999999999999999999999999999999999998876542 67899
Q ss_pred EEcCCCCCCcc-cHHHHHhcCCCC--CCH----HHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHh
Q 000984 464 LVSQEPVLFTG-SIKDNIAYGKDD--ATT----EEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARA 536 (1198)
Q Consensus 464 ~v~Q~~~l~~~-ti~~Ni~~~~~~--~~~----~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARa 536 (1198)
|++|+|.+|.+ |++||+.++... .+. +++..+++.. |++..+.....+||||||||++||||
T Consensus 76 ~~~q~~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~l~~~-----------~l~~~~~~~~~~lS~G~~qrl~lara 144 (232)
T cd03300 76 TVFQNYALFPHLTVFENIAFGLRLKKLPKAEIKERVAEALDLV-----------QLEGYANRKPSQLSGGQQQRVAIARA 144 (232)
T ss_pred EEecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHc-----------CCchhhcCChhhCCHHHHHHHHHHHH
Confidence 99999999864 999999864321 111 2223333333 44444555667999999999999999
Q ss_pred hccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhC--CCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChhhHhcC
Q 000984 537 ILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVED 610 (1198)
Q Consensus 537 l~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 610 (1198)
++++|+++||||||++||+.+.+.+.+.++++.+ ++|+|++||+++.+.. ||+|++|++|++++.|+++++.+.
T Consensus 145 l~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~i~~l~~G~~~~~~~~~~~~~~ 221 (232)
T cd03300 145 LVNEPKVLLLDEPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQEEALTMSDRIAVMNKGKIQQIGTPEEIYEE 221 (232)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEecCCHHHHHhC
Confidence 9999999999999999999999999999988764 7899999999999865 999999999999999999888654
|
PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14263 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-38 Score=349.97 Aligned_cols=219 Identities=30% Similarity=0.417 Sum_probs=185.3
Q ss_pred cEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCC-----CCCeEEECCeecCCc--CH
Q 000984 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDP-----QAGEVLIDGINLKEF--QL 455 (1198)
Q Consensus 383 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~-----~~G~i~i~g~~~~~~--~~ 455 (1198)
.+.+++.+++|+. .++|+|+||++++||+++|+|+||||||||+++|.|+++| .+|+|.++|.++... ..
T Consensus 8 ~~~~~~~~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~ 84 (261)
T PRK14263 8 VMDCKLDKIFYGN---FMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDP 84 (261)
T ss_pred eEEEEeEEEEeCC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEeccccccch
Confidence 4788999999953 4699999999999999999999999999999999999986 799999999998643 44
Q ss_pred HHHhcceEEEcCCCCCCcccHHHHHhcCCCC-----CCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHH
Q 000984 456 QWIRKKIGLVSQEPVLFTGSIKDNIAYGKDD-----ATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQR 530 (1198)
Q Consensus 456 ~~~r~~i~~v~Q~~~l~~~ti~~Ni~~~~~~-----~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqr 530 (1198)
..+|+.++|++|+|++|..|++||+.++... ...+++.++++..++.+.+ ....++...+||||||||
T Consensus 85 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i-------~~~~~~~~~~LS~G~~qr 157 (261)
T PRK14263 85 VVVRRYIGMVFQQPNPFSMSIFDNVAFGLRLNRYKGDLGDRVKHALQGAALWDEV-------KDKLKVSGLSLSGGQQQR 157 (261)
T ss_pred HhhhhceEEEecCCccccccHHHHHHHHHhhcCchHHHHHHHHHHHHHcCCchhh-------hhhhhCCcccCCHHHHHH
Confidence 4667889999999999999999999876321 1123445555555443322 223456778999999999
Q ss_pred HhHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhCCCeEEEEecCcchhhc-cCEEEEEe--------CCEEEEe
Q 000984 531 IAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRN-ADMIAVIH--------RGKIVEK 601 (1198)
Q Consensus 531 i~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~-~d~i~~l~--------~G~i~~~ 601 (1198)
++||||++++|++|||||||++||+.+...+.+.++++.+++|+|++||+++.+.. ||+|++|+ +|++++.
T Consensus 158 v~laral~~~p~llllDEPtsgLD~~~~~~l~~~l~~~~~~~tii~isH~~~~i~~~~d~v~~l~~~~~~~~~~G~i~~~ 237 (261)
T PRK14263 158 LCIARAIATEPEVLLLDEPCSALDPIATRRVEELMVELKKDYTIALVTHNMQQAIRVADTTAFFSVDISQGTRTGYLVEM 237 (261)
T ss_pred HHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEecccccccCCceEEEe
Confidence 99999999999999999999999999999999999988777899999999998765 99999996 8999999
Q ss_pred cChhhHhcCC
Q 000984 602 GTHSKLVEDP 611 (1198)
Q Consensus 602 g~~~~l~~~~ 611 (1198)
|+++++.+++
T Consensus 238 g~~~~~~~~~ 247 (261)
T PRK14263 238 GPTAQIFQNP 247 (261)
T ss_pred CCHHHHHhCC
Confidence 9999987653
|
|
| >COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-39 Score=337.24 Aligned_cols=224 Identities=34% Similarity=0.572 Sum_probs=190.0
Q ss_pred cEEEEeEEEEcCCCCC---------------------CccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCC
Q 000984 383 DIELRDVYFSYPARPN---------------------EQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAG 441 (1198)
Q Consensus 383 ~i~~~~v~~~y~~~~~---------------------~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G 441 (1198)
.|+++||+.-++.++. .--++|+||+++.||+..|.|-||||||||++++.|+++|+.|
T Consensus 4 ~i~i~nv~kiFG~~~~~a~~~~~~G~~k~ei~~~tg~vvGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiept~G 83 (386)
T COG4175 4 KIEIKNVYKIFGKNPKRALKLLDQGKSKAEILKKTGLVVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRG 83 (386)
T ss_pred eEEeecceeecccCHHHHHHHHHcCCcHHHHHHhhCcEEeeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCCCCCc
Confidence 4788888887764321 1136899999999999999999999999999999999999999
Q ss_pred eEEECCeecCCcCHHHHh----cceEEEcCCCCCC-cccHHHHHhcCCCCC------CHHHHHHHHHHhcHHHHHHhCCC
Q 000984 442 EVLIDGINLKEFQLQWIR----KKIGLVSQEPVLF-TGSIKDNIAYGKDDA------TTEEIRVATELANAAKFIDKLPQ 510 (1198)
Q Consensus 442 ~i~i~g~~~~~~~~~~~r----~~i~~v~Q~~~l~-~~ti~~Ni~~~~~~~------~~~~~~~~~~~~~~~~~i~~l~~ 510 (1198)
+|.++|.|+..++.++|| +++++|+|.--|| .-||.||..||.+-. ..++..++++.++|.++-.+.
T Consensus 84 ~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPhrtVl~Nv~fGLev~Gv~~~er~~~a~~~l~~VgL~~~~~~y-- 161 (386)
T COG4175 84 EILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHRTVLENVAFGLEVQGVPKAEREERALEALELVGLEGYADKY-- 161 (386)
T ss_pred eEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccccchhHhhhhhcceeecCCCHHHHHHHHHHHHHHcCchhhhhcC--
Confidence 999999999999987774 6899999999888 579999999986421 224455666667666655444
Q ss_pred CccchhcCCCCCCChHHHHHHhHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhC--CCeEEEEecCcchh-hcc
Q 000984 511 GIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTV-RNA 587 (1198)
Q Consensus 511 g~~t~v~~~g~~lSgGqkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~-~~~ 587 (1198)
...||||+|||+.|||||..+|+|||+|||+|||||--...+|+-+.++.+ +||+|+|||+++.. +-.
T Consensus 162 ---------p~eLSGGMqQRVGLARAla~~~~IlLMDEaFSALDPLIR~~mQdeLl~Lq~~l~KTIvFitHDLdEAlriG 232 (386)
T COG4175 162 ---------PNELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQAKLKKTIVFITHDLDEALRIG 232 (386)
T ss_pred ---------cccccchHHHHHHHHHHHccCCCEEEecCchhhcChHHHHHHHHHHHHHHHHhCCeEEEEecCHHHHHhcc
Confidence 457999999999999999999999999999999999999999988876543 69999999999875 559
Q ss_pred CEEEEEeCCEEEEecChhhHhcCCCchhHH
Q 000984 588 DMIAVIHRGKIVEKGTHSKLVEDPEGAYSQ 617 (1198)
Q Consensus 588 d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~ 617 (1198)
|||..|++|+|++.|+|+|++.++...|-.
T Consensus 233 ~rIaimkdG~ivQ~Gtp~eIl~~PAndYV~ 262 (386)
T COG4175 233 DRIAIMKDGEIVQVGTPEEILLNPANDYVR 262 (386)
T ss_pred ceEEEecCCeEEEeCCHHHHHcCccHHHHH
Confidence 999999999999999999999887655543
|
|
| >TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-38 Score=351.02 Aligned_cols=215 Identities=26% Similarity=0.465 Sum_probs=181.9
Q ss_pred EEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcceE
Q 000984 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIG 463 (1198)
Q Consensus 384 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~ 463 (1198)
++++|+++.|++ +++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.++...+...+++.++
T Consensus 2 l~~~~l~~~~~~---~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 78 (256)
T TIGR03873 2 LRLSRVSWSAGG---RLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARARRVA 78 (256)
T ss_pred ceEEeEEEEECC---EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEEcccCCHHHHhhheE
Confidence 689999999963 46999999999999999999999999999999999999999999999999999888888888999
Q ss_pred EEcCCCC-CCcccHHHHHhcCCCCC-------CHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHH
Q 000984 464 LVSQEPV-LFTGSIKDNIAYGKDDA-------TTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIAR 535 (1198)
Q Consensus 464 ~v~Q~~~-l~~~ti~~Ni~~~~~~~-------~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lAR 535 (1198)
|++|++. .+..|++||+.++.... .++. ...+.+.+..+ |+..........||||||||++|||
T Consensus 79 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~------~~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrl~la~ 150 (256)
T TIGR03873 79 LVEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHD------AAVVDRALART--ELSHLADRDMSTLSGGERQRVHVAR 150 (256)
T ss_pred EecccCccCCCCCHHHHHHhcchhhhhhccCCCHHH------HHHHHHHHHHc--CcHhhhcCCcccCCHHHHHHHHHHH
Confidence 9999995 45689999998753110 0111 01122333333 4444455667789999999999999
Q ss_pred hhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhC-CCeEEEEecCcchhh-ccCEEEEEeCCEEEEecChhhHhc
Q 000984 536 AILKDPRILLLDEATSALDAESEKVVQEALDRIMV-NRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKGTHSKLVE 609 (1198)
Q Consensus 536 al~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~-~~t~i~itH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~ 609 (1198)
|++.+|+++||||||++||+.+...+.+.|+++.+ ++|+|++||+++.+. .||+|++|++|++++.|+++++..
T Consensus 151 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 226 (256)
T TIGR03873 151 ALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAATGVTVVAALHDLNLAASYCDHVVVLDGGRVVAAGPPREVLT 226 (256)
T ss_pred HHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCEEEecCHHHhhC
Confidence 99999999999999999999999999999988754 689999999999995 599999999999999999988754
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. |
| >TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-38 Score=346.22 Aligned_cols=215 Identities=33% Similarity=0.542 Sum_probs=180.5
Q ss_pred EEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcceE
Q 000984 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIG 463 (1198)
Q Consensus 384 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~ 463 (1198)
|+++|++++|+. +++|+|+||++.+||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.+. .++.++
T Consensus 1 i~i~~l~~~~~~---~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~i~g~~~~~~~~--~~~~i~ 75 (237)
T TIGR00968 1 IEIANISKRFGS---FQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHA--RDRKIG 75 (237)
T ss_pred CEEEEEEEEECC---eeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCh--hhcCEE
Confidence 478999999963 369999999999999999999999999999999999999999999999999876543 467899
Q ss_pred EEcCCCCCCcc-cHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhhccC
Q 000984 464 LVSQEPVLFTG-SIKDNIAYGKDD--ATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKD 540 (1198)
Q Consensus 464 ~v~Q~~~l~~~-ti~~Ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal~~~ 540 (1198)
|+||+|.+|.+ |++||+.++... .+..... ..+.+.++.+ |+.........+||||||||++||||++++
T Consensus 76 ~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~lS~G~~qrl~laral~~~ 148 (237)
T TIGR00968 76 FVFQHYALFKHLTVRDNIAFGLEIRKHPKAKIK-----ARVEELLELV--QLEGLGDRYPNQLSGGQRQRVALARALAVE 148 (237)
T ss_pred EEecChhhccCCcHHHHHHhHHHhcCCCHHHHH-----HHHHHHHHHc--CCHhHhhCChhhCCHHHHHHHHHHHHHhcC
Confidence 99999999965 999999875321 1111111 1123344444 333344555678999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHhHHHHHHHHHHHhC--CCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChhhHhcC
Q 000984 541 PRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVED 610 (1198)
Q Consensus 541 ~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 610 (1198)
|+++||||||++||+++.+.+.+.+++..+ ++|+|++||+++.+.. ||+|++|++|++++.|+++++.+.
T Consensus 149 p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~~~~ 221 (237)
T TIGR00968 149 PQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQEEAMEVADRIVVMSNGKIEQIGSPDEVYDH 221 (237)
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEECCEEEEecCHHHHHcC
Confidence 999999999999999999999999988754 6899999999998765 999999999999999999998754
|
|
| >PRK14265 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-38 Score=350.78 Aligned_cols=219 Identities=32% Similarity=0.449 Sum_probs=184.1
Q ss_pred cEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCC-----CCCeEEECCeecCC--cCH
Q 000984 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDP-----QAGEVLIDGINLKE--FQL 455 (1198)
Q Consensus 383 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~-----~~G~i~i~g~~~~~--~~~ 455 (1198)
.|+++|++++|+. +++|+|+||+|++||+++|+||||||||||+++|+|+++| .+|+|.++|.++.. .+.
T Consensus 20 ~l~~~nl~~~~~~---~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~~~~~ 96 (274)
T PRK14265 20 VFEVEGVKVFYGG---FLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQINS 96 (274)
T ss_pred eEEEeeEEEEeCC---eEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEecccccchh
Confidence 6999999999963 3699999999999999999999999999999999999863 58999999999864 344
Q ss_pred HHHhcceEEEcCCCCCCcccHHHHHhcCCCCC-----CHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHH
Q 000984 456 QWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDA-----TTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQR 530 (1198)
Q Consensus 456 ~~~r~~i~~v~Q~~~l~~~ti~~Ni~~~~~~~-----~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqr 530 (1198)
..+|++++|++|++.+|..|+.+|+.++.... .++.+.++++.+++.+.+ ..........||||||||
T Consensus 97 ~~~~~~i~~v~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l-------~~~~~~~~~~LSgGq~qr 169 (274)
T PRK14265 97 VKLRRQVGMVFQRPNPFPKSIYENIAFAPRANGYKGNLDELVEDSLRRAAIWEEV-------KDKLKEKGTALSGGQQQR 169 (274)
T ss_pred HHHhhcEEEEccCCccccccHHHHHHhHHHhcCchHHHHHHHHHHHHHcccchhh-------HHHhcCCcccCCHHHHHH
Confidence 56788999999999999889999998753211 122233344444433222 233456678899999999
Q ss_pred HhHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhCCCeEEEEecCcchhhc-cCEEEEEe---------CCEEEE
Q 000984 531 IAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRN-ADMIAVIH---------RGKIVE 600 (1198)
Q Consensus 531 i~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~-~d~i~~l~---------~G~i~~ 600 (1198)
++||||++++|++|||||||++||+.+...+.+.|+++.+++|+|++||+++.+.. ||++++|+ +|++++
T Consensus 170 v~LAraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~~~~~~~~G~~~~ 249 (274)
T PRK14265 170 LCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKEQYTIIMVTHNMQQASRVADWTAFFNTEIDEYGKRRGKLVE 249 (274)
T ss_pred HHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEecccccccccCceEEE
Confidence 99999999999999999999999999999999999988778999999999998865 99999997 899999
Q ss_pred ecChhhHhcCC
Q 000984 601 KGTHSKLVEDP 611 (1198)
Q Consensus 601 ~g~~~~l~~~~ 611 (1198)
.|+++++..++
T Consensus 250 ~g~~~~~~~~~ 260 (274)
T PRK14265 250 FSPTEQMFGSP 260 (274)
T ss_pred eCCHHHHHhCC
Confidence 99999987653
|
|
| >PRK14241 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-38 Score=351.10 Aligned_cols=218 Identities=32% Similarity=0.496 Sum_probs=181.4
Q ss_pred cEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCC-----CCCeEEECCeecCC--cCH
Q 000984 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDP-----QAGEVLIDGINLKE--FQL 455 (1198)
Q Consensus 383 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~-----~~G~i~i~g~~~~~--~~~ 455 (1198)
.++++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|.|+++| ++|+|.++|.++.. .+.
T Consensus 4 ~l~i~~v~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~~~ 80 (258)
T PRK14241 4 RIDVKDLNIYYGS---FHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDP 80 (258)
T ss_pred cEEEeeEEEEECC---EeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccccCh
Confidence 4899999999963 3599999999999999999999999999999999999974 69999999998853 445
Q ss_pred HHHhcceEEEcCCCCCCc-ccHHHHHhcCCCC---CCH----HHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHH
Q 000984 456 QWIRKKIGLVSQEPVLFT-GSIKDNIAYGKDD---ATT----EEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQ 527 (1198)
Q Consensus 456 ~~~r~~i~~v~Q~~~l~~-~ti~~Ni~~~~~~---~~~----~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGq 527 (1198)
..+|+.++|++|++.+|. .|++||+.++... .+. +++.++++..++.+ +..........+|||||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~~~~~~~~~~~~LS~G~ 153 (258)
T PRK14241 81 VAVRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWN-------EVKDRLDKPGGGLSGGQ 153 (258)
T ss_pred HHHhcceEEEccccccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCch-------hhhhHhhCCcccCCHHH
Confidence 677889999999999886 6999999864311 111 12223333333221 11234566778999999
Q ss_pred HHHHhHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhCCCeEEEEecCcchhh-ccCEEEEEe------CCEEEE
Q 000984 528 KQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVR-NADMIAVIH------RGKIVE 600 (1198)
Q Consensus 528 kqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~-~~d~i~~l~------~G~i~~ 600 (1198)
|||++||||++++|+++||||||++||+.+...+.+.|+++.+++|+|++||+++.+. .||+|++|+ +|+|++
T Consensus 154 ~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tviivsH~~~~~~~~~d~i~~l~~~~~~~~g~i~~ 233 (258)
T PRK14241 154 QQRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELKQDYTIVIVTHNMQQAARVSDQTAFFNLEATGKPGRLVE 233 (258)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEecccCCCCceEEe
Confidence 9999999999999999999999999999999999999998877789999999999886 599999997 899999
Q ss_pred ecChhhHhcC
Q 000984 601 KGTHSKLVED 610 (1198)
Q Consensus 601 ~g~~~~l~~~ 610 (1198)
.|+++++...
T Consensus 234 ~~~~~~~~~~ 243 (258)
T PRK14241 234 IDDTEKIFSN 243 (258)
T ss_pred cCCHHHHHhC
Confidence 9999998754
|
|
| >cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-38 Score=344.05 Aligned_cols=202 Identities=33% Similarity=0.542 Sum_probs=169.8
Q ss_pred EEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCH---HHHhc
Q 000984 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQL---QWIRK 460 (1198)
Q Consensus 384 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~---~~~r~ 460 (1198)
++++|++++|+.. +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. ...|+
T Consensus 1 l~~~~l~~~~~~~--~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~ 78 (214)
T cd03292 1 IEFINVTKTYPNG--TAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYLRR 78 (214)
T ss_pred CEEEEEEEEeCCC--ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHHH
Confidence 4689999999632 469999999999999999999999999999999999999999999999999887654 34678
Q ss_pred ceEEEcCCCCCCc-ccHHHHHhcCCCC--CCHH----HHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhH
Q 000984 461 KIGLVSQEPVLFT-GSIKDNIAYGKDD--ATTE----EIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAI 533 (1198)
Q Consensus 461 ~i~~v~Q~~~l~~-~ti~~Ni~~~~~~--~~~~----~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~l 533 (1198)
.++|++|+|.+|. .|++||+.++... .+.+ ++.++++.. |++........+||||||||++|
T Consensus 79 ~i~~v~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~-----------~l~~~~~~~~~~LS~G~~qrv~l 147 (214)
T cd03292 79 KIGVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRKRVPAALELV-----------GLSHKHRALPAELSGGEQQRVAI 147 (214)
T ss_pred heEEEecCchhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHc-----------CCHHHhhCChhhcCHHHHHHHHH
Confidence 8999999999887 5999999875311 1222 223333333 44444455566899999999999
Q ss_pred HHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh-CCCeEEEEecCcchhhc-cCEEEEEeCCEE
Q 000984 534 ARAILKDPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRN-ADMIAVIHRGKI 598 (1198)
Q Consensus 534 ARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i 598 (1198)
|||++++|+++||||||++||+++.+.+.+.|+++. +++|+|++||+++.+.. ||+|++|++|++
T Consensus 148 aral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~~ 214 (214)
T cd03292 148 ARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATHAKELVDTTRHRVIALERGKL 214 (214)
T ss_pred HHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 999999999999999999999999999999998874 47899999999999875 899999999974
|
The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. |
| >PRK14264 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-38 Score=356.92 Aligned_cols=219 Identities=30% Similarity=0.526 Sum_probs=184.9
Q ss_pred ccEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCC-----CCCCeEEECCeecCCc--C
Q 000984 382 GDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYD-----PQAGEVLIDGINLKEF--Q 454 (1198)
Q Consensus 382 g~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~-----~~~G~i~i~g~~~~~~--~ 454 (1198)
..|+++|++++|+. .++|+++||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|.++... +
T Consensus 44 ~~l~i~nl~~~~~~---~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~~~~~~ 120 (305)
T PRK14264 44 AKLSVEDLDVYYGD---DHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVN 120 (305)
T ss_pred ceEEEEEEEEEeCC---eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccc
Confidence 35899999999964 469999999999999999999999999999999999986 6899999999998653 4
Q ss_pred HHHHhcceEEEcCCCCCCcccHHHHHhcCCCCC-------------------CHHHHHHHHHHhcHHHHHHhCCCCccch
Q 000984 455 LQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDA-------------------TTEEIRVATELANAAKFIDKLPQGIDTL 515 (1198)
Q Consensus 455 ~~~~r~~i~~v~Q~~~l~~~ti~~Ni~~~~~~~-------------------~~~~~~~~~~~~~~~~~i~~l~~g~~t~ 515 (1198)
...+|++++|++|++.+|.+|++||+.++.... .++++..+++.++ +++++++.
T Consensus 121 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-------l~~~~~~~ 193 (305)
T PRK14264 121 LVELRKRVGMVFQSPNPFPKSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAA-------LWDEVNDR 193 (305)
T ss_pred HHHHhhceEEEccCCccccccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcC-------CchhhhHH
Confidence 567788999999999999999999999753210 0112233333322 23344556
Q ss_pred hcCCCCCCChHHHHHHhHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhCCCeEEEEecCcchhhc-cCEE-EEE
Q 000984 516 VGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRN-ADMI-AVI 593 (1198)
Q Consensus 516 v~~~g~~lSgGqkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~-~d~i-~~l 593 (1198)
......+||||||||++|||||+++|+||||||||++||+.+...+.+.|+++.+++|+|++||+++.+.. ||++ ++|
T Consensus 194 ~~~~~~~LSgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~~~tiiivtH~~~~i~~~~d~i~~~l 273 (305)
T PRK14264 194 LDDNALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAEEYTVVVVTHNMQQAARISDQTAVFL 273 (305)
T ss_pred hcCccccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhcCEEEEEe
Confidence 67788899999999999999999999999999999999999999999999988777899999999999865 9997 567
Q ss_pred eCCEEEEecChhhHhcC
Q 000984 594 HRGKIVEKGTHSKLVED 610 (1198)
Q Consensus 594 ~~G~i~~~g~~~~l~~~ 610 (1198)
++|++++.|+++++.+.
T Consensus 274 ~~G~i~~~g~~~~~~~~ 290 (305)
T PRK14264 274 TGGELVEYDDTDKIFEN 290 (305)
T ss_pred cCCEEEEeCCHHHHHhC
Confidence 99999999999988754
|
|
| >cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-38 Score=344.81 Aligned_cols=197 Identities=31% Similarity=0.516 Sum_probs=164.6
Q ss_pred EEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcceEEE
Q 000984 386 LRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLV 465 (1198)
Q Consensus 386 ~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~~v 465 (1198)
++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++. .+|++++|+
T Consensus 2 ~~~l~~~~~~---~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~-----~~~~~i~~v 73 (213)
T cd03235 2 VEDLTVSYGG---HPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLE-----KERKRIGYV 73 (213)
T ss_pred cccceeEECC---EEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCccHH-----HHHhheEEe
Confidence 6799999963 45999999999999999999999999999999999999999999999998764 467789999
Q ss_pred cCCCCC---CcccHHHHHhcCCCCC-------C---HHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHh
Q 000984 466 SQEPVL---FTGSIKDNIAYGKDDA-------T---TEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIA 532 (1198)
Q Consensus 466 ~Q~~~l---~~~ti~~Ni~~~~~~~-------~---~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~ 532 (1198)
+|+|.+ ++.|++||+.++.... . .+++.++++.. |++........+||||||||++
T Consensus 74 ~q~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-----------~l~~~~~~~~~~LSgG~~qrv~ 142 (213)
T cd03235 74 PQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERV-----------GLSELADRQIGELSGGQQQRVL 142 (213)
T ss_pred ccccccccCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHc-----------CCHHHHhCCcccCCHHHHHHHH
Confidence 999976 5689999998754311 1 12233333333 3333344556789999999999
Q ss_pred HHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh-CCCeEEEEecCcchhhc-cCEEEEEeCCEEEEec
Q 000984 533 IARAILKDPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKG 602 (1198)
Q Consensus 533 lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g 602 (1198)
||||++.+|++|||||||++||+.+.+.+.+.|+++. +++|+|++||+++.+.. ||+|++|++| +++.|
T Consensus 143 la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~~-~~~~g 213 (213)
T cd03235 143 LARALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRREGMTILVVTHDLGLVLEYFDRVLLLNRT-VVASG 213 (213)
T ss_pred HHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEcCc-EeecC
Confidence 9999999999999999999999999999999998875 57899999999999865 8999999886 55543
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. |
| >PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-38 Score=350.17 Aligned_cols=224 Identities=29% Similarity=0.471 Sum_probs=184.1
Q ss_pred cEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCee-----cCCcCHHH
Q 000984 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGIN-----LKEFQLQW 457 (1198)
Q Consensus 383 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~-----~~~~~~~~ 457 (1198)
.++++|++++|++ +++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.+ +.+.+...
T Consensus 6 ~l~~~~l~~~~~~---~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~i~~~~~~~ 82 (258)
T PRK11701 6 LLSVRGLTKLYGP---RKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALSEAE 82 (258)
T ss_pred eEEEeeeEEEcCC---ceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCccccccccccCCHHH
Confidence 4899999999963 469999999999999999999999999999999999999999999999998 77666544
Q ss_pred ----HhcceEEEcCCCC--CC-cccHHHHHhcCC---CCCCHHHHHHHHHHhcHHHHHHhCCCCcc-chhcCCCCCCChH
Q 000984 458 ----IRKKIGLVSQEPV--LF-TGSIKDNIAYGK---DDATTEEIRVATELANAAKFIDKLPQGID-TLVGEHGTQLSGG 526 (1198)
Q Consensus 458 ----~r~~i~~v~Q~~~--l~-~~ti~~Ni~~~~---~~~~~~~~~~~~~~~~~~~~i~~l~~g~~-t~v~~~g~~lSgG 526 (1198)
.++.++|++|+|. ++ ..|+.+|+.+.. ......+... ...+.++.+ |++ +..+..+.+||||
T Consensus 83 ~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~~LS~G 155 (258)
T PRK11701 83 RRRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVGARHYGDIRA-----TAGDWLERV--EIDAARIDDLPTTFSGG 155 (258)
T ss_pred HHHHhhcceEEEeeCcccccCccccHHHHHHHHHHHhccCcHHHHHH-----HHHHHHHHc--CCChhHHhCCCccCCHH
Confidence 3567999999984 33 458888886421 1111122211 123455565 443 4677888999999
Q ss_pred HHHHHhHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhC--CCeEEEEecCcchhhc-cCEEEEEeCCEEEEecC
Q 000984 527 QKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGT 603 (1198)
Q Consensus 527 qkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~ 603 (1198)
||||++||||++++|++|||||||++||+.+.+.+.+.++++.+ +.|+|++||+++.+.. ||+|++|++|++++.|+
T Consensus 156 q~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~~~~~~~~d~i~~l~~g~i~~~~~ 235 (258)
T PRK11701 156 MQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLAHRLLVMKQGRVVESGL 235 (258)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999999999999988654 7899999999999974 99999999999999999
Q ss_pred hhhHhcCCCchhH
Q 000984 604 HSKLVEDPEGAYS 616 (1198)
Q Consensus 604 ~~~l~~~~~~~~~ 616 (1198)
++++..++...|.
T Consensus 236 ~~~~~~~~~~~~~ 248 (258)
T PRK11701 236 TDQVLDDPQHPYT 248 (258)
T ss_pred HHHHhcCCCCHHH
Confidence 9998765433343
|
|
| >cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-38 Score=340.34 Aligned_cols=201 Identities=31% Similarity=0.536 Sum_probs=169.1
Q ss_pred EEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcceE
Q 000984 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIG 463 (1198)
Q Consensus 384 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~ 463 (1198)
|+++|++++|++. . .|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. .+++++
T Consensus 1 i~~~~l~~~~~~~---~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~--~~~~i~ 73 (211)
T cd03298 1 VRLDKIRFSYGEQ---P--MHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPP--ADRPVS 73 (211)
T ss_pred CEEEeEEEEeCCE---e--cceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCcCCH--hHccEE
Confidence 4789999999632 2 39999999999999999999999999999999999999999999999876654 357899
Q ss_pred EEcCCCCCCcc-cHHHHHhcCCC-CC-----CHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHh
Q 000984 464 LVSQEPVLFTG-SIKDNIAYGKD-DA-----TTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARA 536 (1198)
Q Consensus 464 ~v~Q~~~l~~~-ti~~Ni~~~~~-~~-----~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARa 536 (1198)
|++|+|.+|.+ |++||+.++.. .. .++++.++++..++.+ .......+||||||||++||||
T Consensus 74 ~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LS~G~~qrv~ia~a 142 (211)
T cd03298 74 MLFQENNLFAHLTVEQNVGLGLSPGLKLTAEDRQAIEVALARVGLAG-----------LEKRLPGELSGGERQRVALARV 142 (211)
T ss_pred EEecccccCCCCcHHHHHhcccccccCccHHHHHHHHHHHHHcCCHH-----------HHhCCcccCCHHHHHHHHHHHH
Confidence 99999999864 99999987532 11 1233444455444433 3344456899999999999999
Q ss_pred hccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhC--CCeEEEEecCcchhhc-cCEEEEEeCCEEEEec
Q 000984 537 ILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKG 602 (1198)
Q Consensus 537 l~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g 602 (1198)
++++|+++||||||++||+++.+.+.+.++++.+ ++|+|++||+++.+.. ||+|++|++|++++.|
T Consensus 143 l~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~ 211 (211)
T cd03298 143 LVRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQPEDAKRLAQRVVFLDNGRIAAQG 211 (211)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhhhCEEEEEECCEEeecC
Confidence 9999999999999999999999999999988753 7899999999999865 9999999999998754
|
Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14258 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-38 Score=350.55 Aligned_cols=221 Identities=31% Similarity=0.506 Sum_probs=184.1
Q ss_pred ccEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCC-----CCeEEECCeecCC--cC
Q 000984 382 GDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQ-----AGEVLIDGINLKE--FQ 454 (1198)
Q Consensus 382 g~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~-----~G~i~i~g~~~~~--~~ 454 (1198)
+.|+++|++++|+. +.+|+|+||++++||+++|+|+||||||||+++|+|+++|+ +|+|.++|.++.. .+
T Consensus 6 ~~l~~~nl~~~~~~---~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~~~~ 82 (261)
T PRK14258 6 PAIKVNNLSFYYDT---QKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERRVN 82 (261)
T ss_pred ceEEEeeEEEEeCC---eeEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhccccc
Confidence 36999999999963 35999999999999999999999999999999999999985 8999999998753 34
Q ss_pred HHHHhcceEEEcCCCCCCcccHHHHHhcCCCC---CCH----HHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHH
Q 000984 455 LQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDD---ATT----EEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQ 527 (1198)
Q Consensus 455 ~~~~r~~i~~v~Q~~~l~~~ti~~Ni~~~~~~---~~~----~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGq 527 (1198)
...+|+.++|++|++.+|..|++||+.++... .+. +++.++++..++.++ ++...+.....|||||
T Consensus 83 ~~~~~~~i~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-------~~~~~~~~~~~LSgGq 155 (261)
T PRK14258 83 LNRLRRQVSMVHPKPNLFPMSVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLWDE-------IKHKIHKSALDLSGGQ 155 (261)
T ss_pred hHHhhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcch-------hhhHhcCCcccCCHHH
Confidence 55678899999999999999999999864211 111 223334444433222 2234566778999999
Q ss_pred HHHHhHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh--CCCeEEEEecCcchhhc-cCEEEEEeC-----CEEE
Q 000984 528 KQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIM--VNRTTVIVAHRLSTVRN-ADMIAVIHR-----GKIV 599 (1198)
Q Consensus 528 kqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~--~~~t~i~itH~~~~~~~-~d~i~~l~~-----G~i~ 599 (1198)
|||++||||++++|++|||||||++||+.+.+.+.+.++++. +++|+|++||+++.+.. ||+|++|++ |+++
T Consensus 156 ~qrv~laral~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiiivsH~~~~i~~~~d~i~~l~~~~~~~G~i~ 235 (261)
T PRK14258 156 QQRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLHQVSRLSDFTAFFKGNENRIGQLV 235 (261)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhcCEEEEEccCCCcCceEE
Confidence 999999999999999999999999999999999999998864 47999999999999865 999999999 9999
Q ss_pred EecChhhHhcCCC
Q 000984 600 EKGTHSKLVEDPE 612 (1198)
Q Consensus 600 ~~g~~~~l~~~~~ 612 (1198)
+.|+++++...+.
T Consensus 236 ~~~~~~~~~~~~~ 248 (261)
T PRK14258 236 EFGLTKKIFNSPH 248 (261)
T ss_pred EeCCHHHHHhCCC
Confidence 9999999976533
|
|
| >PRK13547 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-38 Score=350.80 Aligned_cols=216 Identities=26% Similarity=0.397 Sum_probs=183.4
Q ss_pred EEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCC--------CCeEEECCeecCCcCH
Q 000984 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQ--------AGEVLIDGINLKEFQL 455 (1198)
Q Consensus 384 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~--------~G~i~i~g~~~~~~~~ 455 (1198)
|+++|++++|+. +++|+|+||+|++||+++|+||||||||||+++|+|+++|. +|+|.++|.++...+.
T Consensus 2 l~~~nl~~~~~~---~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~~~ 78 (272)
T PRK13547 2 LTADHLHVARRH---RAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAIDA 78 (272)
T ss_pred eEEEEEEEEECC---EeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcccCCH
Confidence 789999999953 46999999999999999999999999999999999999998 9999999999988888
Q ss_pred HHHhcceEEEcCCCC-CCcccHHHHHhcCCCCC-C-----HHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHH
Q 000984 456 QWIRKKIGLVSQEPV-LFTGSIKDNIAYGKDDA-T-----TEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQK 528 (1198)
Q Consensus 456 ~~~r~~i~~v~Q~~~-l~~~ti~~Ni~~~~~~~-~-----~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqk 528 (1198)
..+++.++|++|++. +|..|++||+.++.... . .++.. ..+.+.++.+ |+++..+.....||||||
T Consensus 79 ~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~LSgG~~ 151 (272)
T PRK13547 79 PRLARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDG-----EIAWQALALA--GATALVGRDVTTLSGGEL 151 (272)
T ss_pred HHHHhhcEEecccCCCCCCCcHHHHHhhcccccccccccCCHHHH-----HHHHHHHHHc--CcHhhhcCCcccCCHHHH
Confidence 888888999999986 57889999998753111 0 01111 1112233333 666667778889999999
Q ss_pred HHHhHHHhhc---------cCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhC--CCeEEEEecCcchhh-ccCEEEEEeCC
Q 000984 529 QRIAIARAIL---------KDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVR-NADMIAVIHRG 596 (1198)
Q Consensus 529 qri~lARal~---------~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~-~~d~i~~l~~G 596 (1198)
||++||||++ .+|++|||||||++||+.+.+.+.+.++++.+ ++|+|+|||+++.+. .||++++|++|
T Consensus 152 qrv~laral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~~~~~~~~d~i~~l~~G 231 (272)
T PRK13547 152 ARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPNLAARHADRIAMLADG 231 (272)
T ss_pred HHHHHHHHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECC
Confidence 9999999999 59999999999999999999999999988754 689999999999986 59999999999
Q ss_pred EEEEecChhhHhc
Q 000984 597 KIVEKGTHSKLVE 609 (1198)
Q Consensus 597 ~i~~~g~~~~l~~ 609 (1198)
++++.|+++++..
T Consensus 232 ~i~~~g~~~~~~~ 244 (272)
T PRK13547 232 AIVAHGAPADVLT 244 (272)
T ss_pred eEEEecCHHHHcC
Confidence 9999999988854
|
|
| >PRK14255 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-38 Score=349.74 Aligned_cols=219 Identities=30% Similarity=0.470 Sum_probs=182.0
Q ss_pred cEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCC--C---CCCeEEECCeecCC--cCH
Q 000984 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYD--P---QAGEVLIDGINLKE--FQL 455 (1198)
Q Consensus 383 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~--~---~~G~i~i~g~~~~~--~~~ 455 (1198)
.|+++|++++|+. +++|+|+||++++||+++|+|+||||||||+++|.|+++ | ++|+|.++|.++.. .+.
T Consensus 5 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~ 81 (252)
T PRK14255 5 IITSSDVHLFYGK---FEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNEDV 81 (252)
T ss_pred eEEEEeEEEEECC---eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEcccccccH
Confidence 4899999999963 469999999999999999999999999999999999865 4 58999999998864 344
Q ss_pred HHHhcceEEEcCCCCCCcccHHHHHhcCCC--C-CCH----HHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHH
Q 000984 456 QWIRKKIGLVSQEPVLFTGSIKDNIAYGKD--D-ATT----EEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQK 528 (1198)
Q Consensus 456 ~~~r~~i~~v~Q~~~l~~~ti~~Ni~~~~~--~-~~~----~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqk 528 (1198)
..++++++|++|+|.+|..|+++|+.++.. . ... +++.++++.+++. .++.........+||||||
T Consensus 82 ~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-------~~i~~~~~~~~~~LS~Gq~ 154 (252)
T PRK14255 82 VQLRKQVGMVFQQPNPFPFSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIW-------DEVKDHLHESALSLSGGQQ 154 (252)
T ss_pred HHhcCeEEEEECCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCc-------cchhhHHhcCcccCCHHHH
Confidence 567789999999999999999999986421 1 111 1222223332221 1223445667789999999
Q ss_pred HHHhHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhCCCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChhhH
Q 000984 529 QRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKL 607 (1198)
Q Consensus 529 qri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l 607 (1198)
||++||||++++|++|||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+.. ||+|++|++|++++.|++.++
T Consensus 155 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 234 (252)
T PRK14255 155 QRVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRDQYTIILVTHSMHQASRISDKTAFFLTGNLIEFADTKQM 234 (252)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHhCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999988767899999999999865 999999999999999999988
Q ss_pred hcCC
Q 000984 608 VEDP 611 (1198)
Q Consensus 608 ~~~~ 611 (1198)
..++
T Consensus 235 ~~~~ 238 (252)
T PRK14255 235 FLNP 238 (252)
T ss_pred hcCC
Confidence 7653
|
|
| >PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-38 Score=343.20 Aligned_cols=209 Identities=29% Similarity=0.495 Sum_probs=176.6
Q ss_pred EEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcceE
Q 000984 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIG 463 (1198)
Q Consensus 384 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~ 463 (1198)
|+++|++++|+. . ..|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+.. +.+++
T Consensus 2 l~~~~l~~~~~~---~--~~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~--~~~i~ 74 (232)
T PRK10771 2 LKLTDITWLYHH---L--PMRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPPS--RRPVS 74 (232)
T ss_pred eEEEEEEEEECC---c--cceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCeecCcCChh--hccEE
Confidence 689999999963 2 2399999999999999999999999999999999999999999999998766442 56899
Q ss_pred EEcCCCCCCcc-cHHHHHhcCCC-CC--C---HHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHh
Q 000984 464 LVSQEPVLFTG-SIKDNIAYGKD-DA--T---TEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARA 536 (1198)
Q Consensus 464 ~v~Q~~~l~~~-ti~~Ni~~~~~-~~--~---~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARa 536 (1198)
|++|+|.+|.+ |++||+.++.. .. . ++++.++++..++ +..+......||||||||++||||
T Consensus 75 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l-----------~~~~~~~~~~LS~G~~qrv~lara 143 (232)
T PRK10771 75 MLFQENNLFSHLTVAQNIGLGLNPGLKLNAAQREKLHAIARQMGI-----------EDLLARLPGQLSGGQRQRVALARC 143 (232)
T ss_pred EEecccccccCCcHHHHHhcccccccCCCHHHHHHHHHHHHHcCc-----------HHHHhCCcccCCHHHHHHHHHHHH
Confidence 99999999874 99999987531 11 1 2234444444444 334444556899999999999999
Q ss_pred hccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhC--CCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChhhHhcC
Q 000984 537 ILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVED 610 (1198)
Q Consensus 537 l~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 610 (1198)
++++|+++||||||++||+.+.+.+.+.++++.+ ++|+|++||+++.+.. ||+|++|++|++++.|+++++...
T Consensus 144 l~~~p~lllLDEP~~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~g~~~~~~~~ 220 (232)
T PRK10771 144 LVREQPILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSLEDAARIAPRSLVVADGRIAWDGPTDELLSG 220 (232)
T ss_pred HhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhC
Confidence 9999999999999999999999999999988753 7899999999999865 999999999999999999988754
|
|
| >PRK10908 cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-38 Score=342.44 Aligned_cols=207 Identities=28% Similarity=0.478 Sum_probs=171.4
Q ss_pred EEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHH---Hhc
Q 000984 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQW---IRK 460 (1198)
Q Consensus 384 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~---~r~ 460 (1198)
|+++|++++|+. ++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+++... +|+
T Consensus 2 l~~~~l~~~~~~--~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~ 79 (222)
T PRK10908 2 IRFEHVSKAYLG--GRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFLRR 79 (222)
T ss_pred EEEEeeEEEecC--CCeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCChhHHHHHHh
Confidence 789999999942 246999999999999999999999999999999999999999999999999998776443 678
Q ss_pred ceEEEcCCCCCC-cccHHHHHhcCCC--CCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhh
Q 000984 461 KIGLVSQEPVLF-TGSIKDNIAYGKD--DATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAI 537 (1198)
Q Consensus 461 ~i~~v~Q~~~l~-~~ti~~Ni~~~~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal 537 (1198)
.++|++|+|.++ ..|++||+.++.. ..+.++..+.+ .+.++.+ |++........+||||||||++||||+
T Consensus 80 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~-----~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~laral 152 (222)
T PRK10908 80 QIGMIFQDHHLLMDRTVYDNVAIPLIIAGASGDDIRRRV-----SAALDKV--GLLDKAKNFPIQLSGGEQQRVGIARAV 152 (222)
T ss_pred heEEEecCccccccccHHHHHHhHHHhcCCCHHHHHHHH-----HHHHHHc--CChhhhhCCchhCCHHHHHHHHHHHHH
Confidence 999999999874 6899999987521 12222222111 1122222 344444556678999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh-CCCeEEEEecCcchhhc-cCEEEEEeCCEEE
Q 000984 538 LKDPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRN-ADMIAVIHRGKIV 599 (1198)
Q Consensus 538 ~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~ 599 (1198)
+++|++|||||||++||+.+.+.+.+.++++. +++|+|++||+++.+.. ||+|++|++|+++
T Consensus 153 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~ 216 (222)
T PRK10908 153 VNKPAVLLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDIGLISRRSYRMLTLSDGHLH 216 (222)
T ss_pred HcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEc
Confidence 99999999999999999999999999998874 46899999999999876 8999999999985
|
|
| >cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-38 Score=342.12 Aligned_cols=205 Identities=26% Similarity=0.492 Sum_probs=171.7
Q ss_pred EEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcceE
Q 000984 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIG 463 (1198)
Q Consensus 384 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~ 463 (1198)
++++|+++.|++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..+++++
T Consensus 1 l~~~~l~~~~~~---~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~----~~~~~i~ 73 (210)
T cd03269 1 LEVENVTKRFGR---VTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDI----AARNRIG 73 (210)
T ss_pred CEEEEEEEEECC---EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCCchhH----HHHccEE
Confidence 478999999963 469999999999999999999999999999999999999999999999987753 4577899
Q ss_pred EEcCCCCCCc-ccHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhhccC
Q 000984 464 LVSQEPVLFT-GSIKDNIAYGKDD--ATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKD 540 (1198)
Q Consensus 464 ~v~Q~~~l~~-~ti~~Ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal~~~ 540 (1198)
|++|++.++. .|++||+.++... ....+.. ..+.+.++.+ |++........+||||||||++||||++.+
T Consensus 74 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrl~la~al~~~ 146 (210)
T cd03269 74 YLPEERGLYPKMKVIDQLVYLAQLKGLKKEEAR-----RRIDEWLERL--ELSEYANKRVEELSKGNQQKVQFIAAVIHD 146 (210)
T ss_pred EeccCCcCCcCCcHHHHHHHHHHHcCCChHHHH-----HHHHHHHHHc--CChHHHhCcHhhCCHHHHHHHHHHHHHhcC
Confidence 9999999886 5999999864211 1111111 1123344444 565566677789999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHhHHHHHHHHHHHh-CCCeEEEEecCcchhhc-cCEEEEEeCCEEEEec
Q 000984 541 PRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKG 602 (1198)
Q Consensus 541 ~~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g 602 (1198)
|+++||||||++||+.+.+.+.+.++++. +++|+|++||+++.+.. ||++++|++|++++.|
T Consensus 147 p~~lllDEP~~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~ 210 (210)
T cd03269 147 PELLILDEPFSGLDPVNVELLKDVIRELARAGKTVILSTHQMELVEELCDRVLLLNKGRAVLYG 210 (210)
T ss_pred CCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhhhEEEEEeCCEEEecC
Confidence 99999999999999999999999998865 46899999999998865 9999999999998764
|
In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-38 Score=343.46 Aligned_cols=208 Identities=27% Similarity=0.405 Sum_probs=173.2
Q ss_pred cEEEEeEEEEcCCCCC-CccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHH---H
Q 000984 383 DIELRDVYFSYPARPN-EQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQW---I 458 (1198)
Q Consensus 383 ~i~~~~v~~~y~~~~~-~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~---~ 458 (1198)
.|+++|++++|+.... .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.+... .
T Consensus 6 ~l~~~~l~~~~~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 85 (228)
T PRK10584 6 IVEVHHLKKSVGQGEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAKL 85 (228)
T ss_pred eEEEeeeEEEccCCCcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEcccCCHHHHHHH
Confidence 4899999999964321 35999999999999999999999999999999999999999999999999998876543 2
Q ss_pred -hcceEEEcCCCCCCc-ccHHHHHhcCCC--CCCH----HHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHH
Q 000984 459 -RKKIGLVSQEPVLFT-GSIKDNIAYGKD--DATT----EEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQR 530 (1198)
Q Consensus 459 -r~~i~~v~Q~~~l~~-~ti~~Ni~~~~~--~~~~----~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqr 530 (1198)
+++++|++|+|.++. .|++||+.++.. .... +++.++++.. |+..........||||||||
T Consensus 86 ~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~-----------~l~~~~~~~~~~LS~Ge~qr 154 (228)
T PRK10584 86 RAKHVGFVFQSFMLIPTLNALENVELPALLRGESSRQSRNGAKALLEQL-----------GLGKRLDHLPAQLSGGEQQR 154 (228)
T ss_pred HhheEEEEEcccccCCCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHc-----------CCHhHhhCChhhCCHHHHHH
Confidence 367999999999886 599999986421 1111 2233333333 33333445556899999999
Q ss_pred HhHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhC--CCeEEEEecCcchhhccCEEEEEeCCEEEEe
Q 000984 531 IAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRNADMIAVIHRGKIVEK 601 (1198)
Q Consensus 531 i~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~ 601 (1198)
++|||||+.+|++|||||||++||+.+.+.+.+.|+++.+ ++|+|++||+++.+..||++++|++|++++.
T Consensus 155 l~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~d~i~~l~~g~i~~~ 227 (228)
T PRK10584 155 VALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQLAARCDRRLRLVNGQLQEE 227 (228)
T ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEec
Confidence 9999999999999999999999999999999999988743 6899999999999888999999999999763
|
|
| >PRK14246 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-38 Score=348.69 Aligned_cols=224 Identities=29% Similarity=0.481 Sum_probs=184.0
Q ss_pred cEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECC------eecCCcCHH
Q 000984 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDG------INLKEFQLQ 456 (1198)
Q Consensus 383 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g------~~~~~~~~~ 456 (1198)
.|.++|++++|++ +++|+|+||++++||+++|+|+||||||||+++|.|+++|++|+|.++| .++.+.+..
T Consensus 10 ~i~~~~~~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~g~~~~~~~~~ 86 (257)
T PRK14246 10 VFNISRLYLYIND---KAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQIDAI 86 (257)
T ss_pred heeeeeEEEecCC---ceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEECCcccccCCHH
Confidence 4899999999964 4699999999999999999999999999999999999999987666655 666666777
Q ss_pred HHhcceEEEcCCCCCCcc-cHHHHHhcCCCC--C-CHHHH----HHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHH
Q 000984 457 WIRKKIGLVSQEPVLFTG-SIKDNIAYGKDD--A-TTEEI----RVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQK 528 (1198)
Q Consensus 457 ~~r~~i~~v~Q~~~l~~~-ti~~Ni~~~~~~--~-~~~~~----~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqk 528 (1198)
.+|.+++|++|+|.+|.+ |+++|+.++... . .+++. .++++..++.+.+ ....+..+..||||||
T Consensus 87 ~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-------~~~~~~~~~~LS~G~~ 159 (257)
T PRK14246 87 KLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEV-------YDRLNSPASQLSGGQQ 159 (257)
T ss_pred HHhcceEEEccCCccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCccc-------hhhhcCCcccCCHHHH
Confidence 788999999999999875 999999875321 1 22222 2222222221111 1234567788999999
Q ss_pred HHHhHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhCCCeEEEEecCcchhh-ccCEEEEEeCCEEEEecChhhH
Q 000984 529 QRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKGTHSKL 607 (1198)
Q Consensus 529 qri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l 607 (1198)
||++||||++.+|+++||||||++||+.+.+.+.+.+.++.+++|+|++||+++.+. .||++++|++|++++.|+++++
T Consensus 160 qrl~laral~~~P~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiilvsh~~~~~~~~~d~v~~l~~g~i~~~g~~~~~ 239 (257)
T PRK14246 160 QRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKNEIAIVIVSHNPQQVARVADYVAFLYNGELVEWGSSNEI 239 (257)
T ss_pred HHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCcEEEEEECCHHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 999999999999999999999999999999999999998877799999999999985 5999999999999999999999
Q ss_pred hcCCCchhH
Q 000984 608 VEDPEGAYS 616 (1198)
Q Consensus 608 ~~~~~~~~~ 616 (1198)
.+++...+.
T Consensus 240 ~~~~~~~~~ 248 (257)
T PRK14246 240 FTSPKNELT 248 (257)
T ss_pred HhCCCcHHH
Confidence 876443343
|
|
| >cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-38 Score=341.89 Aligned_cols=205 Identities=32% Similarity=0.566 Sum_probs=172.0
Q ss_pred EEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCC--cCHHHHhcc
Q 000984 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKE--FQLQWIRKK 461 (1198)
Q Consensus 384 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~--~~~~~~r~~ 461 (1198)
|+++|++++|+. .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. .+...++++
T Consensus 1 l~~~~l~~~~~~---~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 77 (213)
T cd03262 1 IEIKNLHKSFGD---FHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNINELRQK 77 (213)
T ss_pred CEEEEEEEEECC---eEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccchhHHHHHhc
Confidence 468999999964 469999999999999999999999999999999999999999999999998853 345567889
Q ss_pred eEEEcCCCCCCc-ccHHHHHhcCCC---CCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhh
Q 000984 462 IGLVSQEPVLFT-GSIKDNIAYGKD---DATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAI 537 (1198)
Q Consensus 462 i~~v~Q~~~l~~-~ti~~Ni~~~~~---~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal 537 (1198)
++|++|+|.+|. .|++||+.++.. ..+.++..+ .+.+.++.+ |++..+.....+||||||||++||||+
T Consensus 78 i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~la~al 150 (213)
T cd03262 78 VGMVFQQFNLFPHLTVLENITLAPIKVKGMSKAEAEE-----RALELLEKV--GLADKADAYPAQLSGGQQQRVAIARAL 150 (213)
T ss_pred ceEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHH-----HHHHHHHHc--CCHhHhhhCccccCHHHHHHHHHHHHH
Confidence 999999999886 699999987531 122222111 112334444 555566677789999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhC-CCeEEEEecCcchhhc-cCEEEEEeCCEE
Q 000984 538 LKDPRILLLDEATSALDAESEKVVQEALDRIMV-NRTTVIVAHRLSTVRN-ADMIAVIHRGKI 598 (1198)
Q Consensus 538 ~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~-~~t~i~itH~~~~~~~-~d~i~~l~~G~i 598 (1198)
+++|++|||||||++||+.+.+.+.+.|+++.+ ++|+|++||+++.+.. ||+|++|++|++
T Consensus 151 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tvi~~sh~~~~~~~~~d~i~~l~~g~i 213 (213)
T cd03262 151 AMNPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEMGFAREVADRVIFMDDGRI 213 (213)
T ss_pred hcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 999999999999999999999999999988754 6899999999999865 999999999974
|
Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM |
| >COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-39 Score=317.25 Aligned_cols=224 Identities=24% Similarity=0.447 Sum_probs=187.1
Q ss_pred ccEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHH-hc
Q 000984 382 GDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWI-RK 460 (1198)
Q Consensus 382 g~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~-r~ 460 (1198)
+.+..+|+..+|.. +++.+++||++++||.|++.||||+||||...++.|+..|++|+|.+||.|+..++.+.. |-
T Consensus 3 ~~L~a~~l~K~y~k---r~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d~G~i~ld~~diT~lPm~~RArl 79 (243)
T COG1137 3 STLVAENLAKSYKK---RKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHKRARL 79 (243)
T ss_pred cEEEehhhhHhhCC---eeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEecCCceEEECCcccccCChHHHhhc
Confidence 35788999999964 469999999999999999999999999999999999999999999999999999998764 56
Q ss_pred ceEEEcCCCCCCc-ccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhhcc
Q 000984 461 KIGLVSQEPVLFT-GSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILK 539 (1198)
Q Consensus 461 ~i~~v~Q~~~l~~-~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal~~ 539 (1198)
.|||+||+|.+|. -||+|||..-.+. .....+...+...+++.++.+ ++...-...+..||||||.|+-|||||..
T Consensus 80 GigYLpQE~SIFr~LtV~dNi~~vlE~-~~~d~~~~~~~~~l~~LL~ef--~i~hlr~~~a~sLSGGERRR~EIARaLa~ 156 (243)
T COG1137 80 GIGYLPQEASIFRKLTVEDNIMAVLEI-REKDLKKAERKEELDALLEEF--HITHLRDSKAYSLSGGERRRVEIARALAA 156 (243)
T ss_pred CcccccccchHhhcCcHHHHHHHHHhh-hhcchhHHHHHHHHHHHHHHh--chHHHhcCcccccccchHHHHHHHHHHhc
Confidence 7999999999996 5999999864332 111112122222333344444 56777788899999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHhHHHHHHHHHHHhCC-CeEEEEecCc-chhhccCEEEEEeCCEEEEecChhhHhcCC
Q 000984 540 DPRILLLDEATSALDAESEKVVQEALDRIMVN-RTTVIVAHRL-STVRNADMIAVIHRGKIVEKGTHSKLVEDP 611 (1198)
Q Consensus 540 ~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~-~t~i~itH~~-~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~ 611 (1198)
+|+.+|||||+|++||.+...|++.|+.+... --|++.-|.. +++.-|||.+++.+|+|..+|+|+|+.+++
T Consensus 157 ~P~fiLLDEPFAGVDPiaV~dIq~iI~~L~~rgiGvLITDHNVREtL~i~dRaYIi~~G~vla~G~p~ei~~n~ 230 (243)
T COG1137 157 NPKFILLDEPFAGVDPIAVIDIQRIIKHLKDRGIGVLITDHNVRETLDICDRAYIISDGKVLAEGSPEEIVNNE 230 (243)
T ss_pred CCCEEEecCCccCCCchhHHHHHHHHHHHHhCCceEEEccccHHHHHhhhheEEEEecCeEEecCCHHHHhcCh
Confidence 99999999999999999999999999888654 4455555886 467889999999999999999999998863
|
|
| >PRK11144 modC molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-38 Score=361.03 Aligned_cols=212 Identities=28% Similarity=0.481 Sum_probs=180.0
Q ss_pred EEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCc----CHHHHh
Q 000984 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEF----QLQWIR 459 (1198)
Q Consensus 384 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~----~~~~~r 459 (1198)
|++ |++++|++ . .+ |+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+. .....+
T Consensus 2 l~~-~l~k~~~~---~-~~-~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~~~~~~~~~~~~~~~ 75 (352)
T PRK11144 2 LEL-NFKQQLGD---L-CL-TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEK 75 (352)
T ss_pred eEE-EEEEEeCC---E-EE-EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccchhh
Confidence 567 89999953 2 23 89999999999999999999999999999999999999999999998653 234567
Q ss_pred cceEEEcCCCCCCc-ccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhhc
Q 000984 460 KKIGLVSQEPVLFT-GSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAIL 538 (1198)
Q Consensus 460 ~~i~~v~Q~~~l~~-~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal~ 538 (1198)
++++|++|++.+|. .|++||+.++......+++.+.++.. |++........+||||||||++|||||+
T Consensus 76 ~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~l~~~-----------gl~~~~~~~~~~LSgGq~qRvalaraL~ 144 (352)
T PRK11144 76 RRIGYVFQDARLFPHYKVRGNLRYGMAKSMVAQFDKIVALL-----------GIEPLLDRYPGSLSGGEKQRVAIGRALL 144 (352)
T ss_pred CCEEEEcCCcccCCCCcHHHHHHhhhhhhhHHHHHHHHHHc-----------CCchhhhCCcccCCHHHHHHHHHHHHHH
Confidence 89999999999985 69999999875433334444444444 4444455666789999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhC--CCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChhhHhcCCC
Q 000984 539 KDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVEDPE 612 (1198)
Q Consensus 539 ~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~~ 612 (1198)
++|++|||||||++||+.+.+.+.+.|+++.+ ++|+|+|||+++.+.. ||+|++|++|++++.|+++++..++.
T Consensus 145 ~~p~llLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tii~vTHd~~~~~~~~d~i~~l~~G~i~~~g~~~~i~~~p~ 221 (352)
T PRK11144 145 TAPELLLMDEPLASLDLPRKRELLPYLERLAREINIPILYVSHSLDEILRLADRVVVLEQGKVKAFGPLEEVWASSA 221 (352)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEEEEeCCEEEEecCHHHHHhCcc
Confidence 99999999999999999999999999988754 6899999999998765 99999999999999999999987653
|
|
| >PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-38 Score=358.48 Aligned_cols=228 Identities=23% Similarity=0.346 Sum_probs=183.7
Q ss_pred cEEEEeEEEEcCCCC-CCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCC----CCCCeEEECCeecCCcCHHH
Q 000984 383 DIELRDVYFSYPARP-NEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYD----PQAGEVLIDGINLKEFQLQW 457 (1198)
Q Consensus 383 ~i~~~~v~~~y~~~~-~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~----~~~G~i~i~g~~~~~~~~~~ 457 (1198)
.++++|++++|+.+. ...+|+|+||+|++||+++|+|+||||||||+++|+|+.+ |++|+|.++|+++.+.+...
T Consensus 3 ~L~v~~l~~~y~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~ 82 (330)
T PRK15093 3 LLDIRNLTIEFKTSDGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPRE 82 (330)
T ss_pred eEEEeeeEEEEeCCCCCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHHH
Confidence 378999999996432 2469999999999999999999999999999999999986 58999999999998887665
Q ss_pred Hh----cceEEEcCCCCC--C-cccHHHHHhcCCC---CC-----C----HHHHHHHHHHhcHHHHHHhCCCCccchhcC
Q 000984 458 IR----KKIGLVSQEPVL--F-TGSIKDNIAYGKD---DA-----T----TEEIRVATELANAAKFIDKLPQGIDTLVGE 518 (1198)
Q Consensus 458 ~r----~~i~~v~Q~~~l--~-~~ti~~Ni~~~~~---~~-----~----~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~ 518 (1198)
++ ++|+||+|+|.. . ..||.+|+..... .. . .+++.+.++..++.+. ......
T Consensus 83 ~~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~--------~~~~~~ 154 (330)
T PRK15093 83 RRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDH--------KDAMRS 154 (330)
T ss_pred HHHHhCCCEEEEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCCh--------HHHHhC
Confidence 43 479999999973 3 3589999864210 00 1 1122333333332210 123456
Q ss_pred CCCCCChHHHHHHhHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhC--CCeEEEEecCcchhhc-cCEEEEEeC
Q 000984 519 HGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRN-ADMIAVIHR 595 (1198)
Q Consensus 519 ~g~~lSgGqkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~~-~d~i~~l~~ 595 (1198)
....||||||||++|||||+.+|++|||||||++||+.+...+.+.|+++.+ +.|+|+|||+++.+.. ||+|++|++
T Consensus 155 ~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl~~v~~~~dri~vm~~ 234 (330)
T PRK15093 155 FPYELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQMLSQWADKINVLYC 234 (330)
T ss_pred CchhCCHHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEEC
Confidence 6679999999999999999999999999999999999999999999988754 6899999999999965 999999999
Q ss_pred CEEEEecChhhHhcCCCchhHHH
Q 000984 596 GKIVEKGTHSKLVEDPEGAYSQL 618 (1198)
Q Consensus 596 G~i~~~g~~~~l~~~~~~~~~~~ 618 (1198)
|+|+|.|+++++..++...|.+.
T Consensus 235 G~ive~g~~~~i~~~p~~~y~~~ 257 (330)
T PRK15093 235 GQTVETAPSKELVTTPHHPYTQA 257 (330)
T ss_pred CEEEEECCHHHHHhCCCCHHHHH
Confidence 99999999999987765666553
|
|
| >cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-38 Score=343.38 Aligned_cols=214 Identities=27% Similarity=0.443 Sum_probs=170.9
Q ss_pred EEEEeEEEEcCCCC-CCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCC---CCCCeEEECCeecCCcCHHHHh
Q 000984 384 IELRDVYFSYPARP-NEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYD---PQAGEVLIDGINLKEFQLQWIR 459 (1198)
Q Consensus 384 i~~~~v~~~y~~~~-~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~---~~~G~i~i~g~~~~~~~~~~~r 459 (1198)
+.++||+++|+... .+++|+|+||++++||+++|+||||||||||+++|.|+++ |++|+|.++|.++. ...+|
T Consensus 4 ~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~---~~~~~ 80 (226)
T cd03234 4 LPWWDVGLKAKNWNKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRK---PDQFQ 80 (226)
T ss_pred ceeecceeeeecCccccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECC---hHHhc
Confidence 57899999997542 3679999999999999999999999999999999999999 99999999999875 34678
Q ss_pred cceEEEcCCCCCCcc-cHHHHHhcCCCCCCHHHHHHHHHHhcHHH-HHHhCCCCccchhcCCCCCCChHHHHHHhHHHhh
Q 000984 460 KKIGLVSQEPVLFTG-SIKDNIAYGKDDATTEEIRVATELANAAK-FIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAI 537 (1198)
Q Consensus 460 ~~i~~v~Q~~~l~~~-ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~-~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal 537 (1198)
++++|++|++.+|.+ |++||+.++...................+ .++.+ |+..........||||||||++||||+
T Consensus 81 ~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrl~laral 158 (226)
T cd03234 81 KCVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDL--ALTRIGGNLVKGISGGERRRVSIAVQL 158 (226)
T ss_pred ccEEEeCCCCccCcCCcHHHHHHHHHHhhcccccchHHHHHHHHHHHHHhh--cchhhhcccccCcCHHHHHHHHHHHHH
Confidence 899999999999976 99999987421110000000000000111 22222 444444556678999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh-CCCeEEEEecCc-chh-hccCEEEEEeCCEEEEec
Q 000984 538 LKDPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRL-STV-RNADMIAVIHRGKIVEKG 602 (1198)
Q Consensus 538 ~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~-~~~-~~~d~i~~l~~G~i~~~g 602 (1198)
+++|+++||||||++||+.+.+.+.+.++++. +++|+|++||++ ..+ ..||+|++|++|++++.|
T Consensus 159 ~~~p~illlDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~~g 226 (226)
T cd03234 159 LWDPKVLILDEPTSGLDSFTALNLVSTLSQLARRNRIVILTIHQPRSDLFRLFDRILLLSSGEIVYSG 226 (226)
T ss_pred HhCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHhCCEEEEEeCCEEEecC
Confidence 99999999999999999999999999998865 468999999998 355 569999999999998865
|
The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in |
| >PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-38 Score=348.35 Aligned_cols=219 Identities=24% Similarity=0.432 Sum_probs=179.5
Q ss_pred cEEEEeEEEEcCCC------CCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHH
Q 000984 383 DIELRDVYFSYPAR------PNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQ 456 (1198)
Q Consensus 383 ~i~~~~v~~~y~~~------~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~ 456 (1198)
.|+++|++++|+.. .+.++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++......
T Consensus 4 ~l~~~~l~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~ 83 (267)
T PRK15112 4 LLEVRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDYS 83 (267)
T ss_pred eEEEeceEEEecCCCCcccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCchh
Confidence 48999999999632 124699999999999999999999999999999999999999999999999998765555
Q ss_pred HHhcceEEEcCCCC--CCc-ccHHHHHhcCCC---CCCH----HHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChH
Q 000984 457 WIRKKIGLVSQEPV--LFT-GSIKDNIAYGKD---DATT----EEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGG 526 (1198)
Q Consensus 457 ~~r~~i~~v~Q~~~--l~~-~ti~~Ni~~~~~---~~~~----~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgG 526 (1198)
..+++++|++|+|. ++. -|+.+|+.+... .... +++.++++.+++. .........+||||
T Consensus 84 ~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~----------~~~~~~~~~~LS~G 153 (267)
T PRK15112 84 YRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGLL----------PDHASYYPHMLAPG 153 (267)
T ss_pred hHhccEEEEecCchhhcCcchhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCC----------hHHHhcCchhcCHH
Confidence 66678999999985 443 489999875311 1111 2233344443331 11223345689999
Q ss_pred HHHHHhHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhC--CCeEEEEecCcchhhc-cCEEEEEeCCEEEEecC
Q 000984 527 QKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGT 603 (1198)
Q Consensus 527 qkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~ 603 (1198)
||||++||||++++|++|||||||++||+++.+.+.+.|+++.+ ++|+|++||+++.+.. ||+|++|++|++++.|+
T Consensus 154 ~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~G~i~~~~~ 233 (267)
T PRK15112 154 QKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHLGMMKHISDQVLVMHQGEVVERGS 233 (267)
T ss_pred HHHHHHHHHHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEecCC
Confidence 99999999999999999999999999999999999999988753 7899999999999876 99999999999999999
Q ss_pred hhhHhcCC
Q 000984 604 HSKLVEDP 611 (1198)
Q Consensus 604 ~~~l~~~~ 611 (1198)
++++.+.+
T Consensus 234 ~~~~~~~~ 241 (267)
T PRK15112 234 TADVLASP 241 (267)
T ss_pred HHHHhcCC
Confidence 99987653
|
|
| >COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-38 Score=304.64 Aligned_cols=192 Identities=29% Similarity=0.535 Sum_probs=168.5
Q ss_pred CCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcceEEEcCCCCCCcccHH
Q 000984 398 NEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIK 477 (1198)
Q Consensus 398 ~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~ 477 (1198)
+.++|+|+||++.+||+++|+||||||||||++.++-+.+|++|.+++.|.+++.++++.+|.+|+||.|.|-||.+||.
T Consensus 15 ~a~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lisp~~G~l~f~Ge~vs~~~pea~Rq~VsY~~Q~paLfg~tVe 94 (223)
T COG4619 15 DAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPEAYRQQVSYCAQTPALFGDTVE 94 (223)
T ss_pred CCeeecceeeeecCCceEEEeCCCCccHHHHHHHHHhccCCCCceEEEcCccccccChHHHHHHHHHHHcCccccccchh
Confidence 56799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCC----CCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhhccCCCEEEEeCCCCCC
Q 000984 478 DNIAYGKD----DATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSAL 553 (1198)
Q Consensus 478 ~Ni~~~~~----~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal~~~~~illlDe~ts~l 553 (1198)
||+.|+.. ..+.... .+++..+. -.++.+..+..+||||+|||+||+|-|---|+||+||||||||
T Consensus 95 DNlifP~~~r~rr~dr~aa---------~~llar~~-l~~~~L~k~it~lSGGE~QriAliR~Lq~~P~ILLLDE~TsAL 164 (223)
T COG4619 95 DNLIFPWQIRNRRPDRAAA---------LDLLARFA-LPDSILTKNITELSGGEKQRIALIRNLQFMPKILLLDEITSAL 164 (223)
T ss_pred hccccchHHhccCCChHHH---------HHHHHHcC-CchhhhcchhhhccchHHHHHHHHHHhhcCCceEEecCchhhc
Confidence 99998632 1111211 22333331 2356677888899999999999999999999999999999999
Q ss_pred CHHhHHHHHHHHHHHh--CCCeEEEEecCcch-hhccCEEEEEeCCEEE
Q 000984 554 DAESEKVVQEALDRIM--VNRTTVIVAHRLST-VRNADMIAVIHRGKIV 599 (1198)
Q Consensus 554 D~~~~~~i~~~i~~~~--~~~t~i~itH~~~~-~~~~d~i~~l~~G~i~ 599 (1198)
|+.+.+.|.+.|..+. ++..++.|||+... ++.+|+++-+..|++-
T Consensus 165 D~~nkr~ie~mi~~~v~~q~vAv~WiTHd~dqa~rha~k~itl~~G~~~ 213 (223)
T COG4619 165 DESNKRNIEEMIHRYVREQNVAVLWITHDKDQAIRHADKVITLQPGHAG 213 (223)
T ss_pred ChhhHHHHHHHHHHHhhhhceEEEEEecChHHHhhhhheEEEeccCccc
Confidence 9999999999998876 46899999999987 7889999999999863
|
|
| >cd03299 ABC_ModC_like Archeal protein closely related to ModC | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-38 Score=341.88 Aligned_cols=210 Identities=30% Similarity=0.555 Sum_probs=178.5
Q ss_pred EEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcceE
Q 000984 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIG 463 (1198)
Q Consensus 384 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~ 463 (1198)
|+++|++++|+. ++|+|+||+|++||+++|+|+||||||||+++|.|+++|++|+|.++|.++.+.+.. ++.++
T Consensus 1 l~~~~l~~~~~~----~~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~~G~v~i~g~~~~~~~~~--~~~i~ 74 (235)
T cd03299 1 LKVENLSKDWKE----FKLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPPE--KRDIS 74 (235)
T ss_pred CeeEeEEEEeCC----ceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcCcCChh--HcCEE
Confidence 468999999962 289999999999999999999999999999999999999999999999998776543 67899
Q ss_pred EEcCCCCCCc-ccHHHHHhcCCCCC--CH----HHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHh
Q 000984 464 LVSQEPVLFT-GSIKDNIAYGKDDA--TT----EEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARA 536 (1198)
Q Consensus 464 ~v~Q~~~l~~-~ti~~Ni~~~~~~~--~~----~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARa 536 (1198)
|++|++.+|. .|++||+.++.... +. +++.++++.. |+...+.....+||||||||++||||
T Consensus 75 ~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~-----------~l~~~~~~~~~~LS~G~~qrl~lara 143 (235)
T cd03299 75 YVPQNYALFPHMTVYKNIAYGLKKRKVDKKEIERKVLEIAEML-----------GIDHLLNRKPETLSGGEQQRVAIARA 143 (235)
T ss_pred EEeecCccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHc-----------CChhHHhcCcccCCHHHHHHHHHHHH
Confidence 9999999884 79999998753221 11 1222333333 34444455667899999999999999
Q ss_pred hccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhC--CCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChhhHhcC
Q 000984 537 ILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVED 610 (1198)
Q Consensus 537 l~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 610 (1198)
++++|++++|||||++||+.+.+.+.+.++++.+ ++|+|++||+++.+.. ||+|++|++|++++.|+++++.+.
T Consensus 144 l~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~~~tili~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 220 (235)
T cd03299 144 LVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDFEEAWALADKVAIMLNGKLIQVGKPEEVFKK 220 (235)
T ss_pred HHcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHHhC
Confidence 9999999999999999999999999999988654 7899999999999875 999999999999999999988764
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-37 Score=347.48 Aligned_cols=220 Identities=24% Similarity=0.389 Sum_probs=179.1
Q ss_pred cEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCC---CCeEEECCeecCCc-----C
Q 000984 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQ---AGEVLIDGINLKEF-----Q 454 (1198)
Q Consensus 383 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~---~G~i~i~g~~~~~~-----~ 454 (1198)
.|+++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|+ +|+|.++|.++... +
T Consensus 4 ~l~~~nl~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~~~ 80 (262)
T PRK09984 4 IIRVEKLAKTFNQ---HQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARD 80 (262)
T ss_pred EEEEeeEEEEeCC---eEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccchh
Confidence 4899999999963 46999999999999999999999999999999999999886 49999999988653 2
Q ss_pred HHHHhcceEEEcCCCCCCc-ccHHHHHhcCCCCCCHH--H---HHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHH
Q 000984 455 LQWIRKKIGLVSQEPVLFT-GSIKDNIAYGKDDATTE--E---IRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQK 528 (1198)
Q Consensus 455 ~~~~r~~i~~v~Q~~~l~~-~ti~~Ni~~~~~~~~~~--~---~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqk 528 (1198)
...++++++|+||++.+|. .|+++|+.++....... . .........+.+.++.+ |++.........||||||
T Consensus 81 ~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~LS~G~~ 158 (262)
T PRK09984 81 IRKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRV--GMVHFAHQRVSTLSGGQQ 158 (262)
T ss_pred HHHHHhheEEEccccccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHc--CCHHHHhCCccccCHHHH
Confidence 3556788999999999886 59999998753211000 0 00000011122334433 454455667778999999
Q ss_pred HHHhHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhC--CCeEEEEecCcchhh-ccCEEEEEeCCEEEEecChh
Q 000984 529 QRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKGTHS 605 (1198)
Q Consensus 529 qri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~-~~d~i~~l~~G~i~~~g~~~ 605 (1198)
||++||||++.+|++|||||||++||+++.+.+.+.|+++.+ ++|+|++||+++.+. .||+|++|++|++++.|+++
T Consensus 159 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~~~~~~~~d~i~~l~~g~i~~~g~~~ 238 (262)
T PRK09984 159 QRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVDYALRYCERIVALRQGHVFYDGSSQ 238 (262)
T ss_pred HHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 999999999999999999999999999999999999998753 689999999999865 59999999999999999999
Q ss_pred hH
Q 000984 606 KL 607 (1198)
Q Consensus 606 ~l 607 (1198)
++
T Consensus 239 ~~ 240 (262)
T PRK09984 239 QF 240 (262)
T ss_pred Hh
Confidence 86
|
|
| >TIGR01978 sufC FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-38 Score=346.08 Aligned_cols=215 Identities=26% Similarity=0.396 Sum_probs=174.5
Q ss_pred EEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccC--CCCCCeEEECCeecCCcCHHHH-hc
Q 000984 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFY--DPQAGEVLIDGINLKEFQLQWI-RK 460 (1198)
Q Consensus 384 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~--~~~~G~i~i~g~~~~~~~~~~~-r~ 460 (1198)
|+++|++++|+. +++|+|+||+|++||+++|+||||||||||+++|+|+. +|++|+|.++|.++...+.... +.
T Consensus 1 l~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 77 (243)
T TIGR01978 1 LKIKDLHVSVED---KEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDERARA 77 (243)
T ss_pred CeEeeEEEEECC---EEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCCCCHHHhhcc
Confidence 478999999963 46999999999999999999999999999999999994 7999999999999988776554 45
Q ss_pred ceEEEcCCCCCCcc-cHHHHHhcCCCC---------CCHHHHHHHHHHhcHHHHHHhCCCCccch-hcCCCC-CCChHHH
Q 000984 461 KIGLVSQEPVLFTG-SIKDNIAYGKDD---------ATTEEIRVATELANAAKFIDKLPQGIDTL-VGEHGT-QLSGGQK 528 (1198)
Q Consensus 461 ~i~~v~Q~~~l~~~-ti~~Ni~~~~~~---------~~~~~~~~~~~~~~~~~~i~~l~~g~~t~-v~~~g~-~lSgGqk 528 (1198)
.++|++|+|.+|.+ |+++|+.+.... .+.++..+ .+.+.++.+ |++.. ...... .||||||
T Consensus 78 ~i~~v~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~~~LS~G~~ 150 (243)
T TIGR01978 78 GLFLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLK-----LLKAKLALL--GMDEEFLNRSVNEGFSGGEK 150 (243)
T ss_pred ceEeeeccccccCCcCHHHHHHHHHHHhhcccccccccHHHHHH-----HHHHHHHHc--CCchhhcccccccCcCHHHH
Confidence 69999999998864 899999764211 01111111 112233333 44322 233333 5999999
Q ss_pred HHHhHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh-CCCeEEEEecCcchhhc--cCEEEEEeCCEEEEecChh
Q 000984 529 QRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRN--ADMIAVIHRGKIVEKGTHS 605 (1198)
Q Consensus 529 qri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~~--~d~i~~l~~G~i~~~g~~~ 605 (1198)
||++||||++.+|++|||||||++||+.+.+.+.+.|+++. +++|+|++||+++.+.. ||+|++|++|++++.|+++
T Consensus 151 qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~vsH~~~~~~~~~~d~i~~l~~G~i~~~g~~~ 230 (243)
T TIGR01978 151 KRNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQRLLNYIKPDYVHVLLDGRIVKSGDVE 230 (243)
T ss_pred HHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCcEEEEEEecHHHHHhhcCCeEEEEeCCEEEEecCHH
Confidence 99999999999999999999999999999999999998875 46899999999999875 7999999999999999987
Q ss_pred hHh
Q 000984 606 KLV 608 (1198)
Q Consensus 606 ~l~ 608 (1198)
++.
T Consensus 231 ~~~ 233 (243)
T TIGR01978 231 LAK 233 (243)
T ss_pred Hhc
Confidence 654
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA. |
| >COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-38 Score=313.98 Aligned_cols=219 Identities=28% Similarity=0.474 Sum_probs=183.7
Q ss_pred EEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcceE
Q 000984 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIG 463 (1198)
Q Consensus 384 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~ 463 (1198)
+++.+++.+|++ -..+++|+||+++.||.+||.|+|||||||++++|.+++.|++|.|.+||.|+... +...|++||
T Consensus 2 l~v~~l~K~y~~--~v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg~d~~~~-p~~vrr~IG 78 (245)
T COG4555 2 LEVTDLTKSYGS--KVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVRD-PSFVRRKIG 78 (245)
T ss_pred eeeeehhhhccC--HHhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCCCceEEEeecccccC-hHHHhhhcc
Confidence 688999999975 23589999999999999999999999999999999999999999999999998654 456788999
Q ss_pred EEcCCCCCC-cccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhhccCCC
Q 000984 464 LVSQEPVLF-TGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPR 542 (1198)
Q Consensus 464 ~v~Q~~~l~-~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal~~~~~ 542 (1198)
+++-+.-|+ ..|+||||.|...-+.-.+.....+...+.+. | +++..+..+..+||-|+|||++|||||.++|+
T Consensus 79 Vl~~e~glY~RlT~rEnl~~Fa~L~~l~~~~~kari~~l~k~---l--~l~~~~~rRv~~~S~G~kqkV~iARAlvh~P~ 153 (245)
T COG4555 79 VLFGERGLYARLTARENLKYFARLNGLSRKEIKARIAELSKR---L--QLLEYLDRRVGEFSTGMKQKVAIARALVHDPS 153 (245)
T ss_pred eecCCcChhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHH---h--ChHHHHHHHHhhhchhhHHHHHHHHHHhcCCC
Confidence 999777777 57999999974321221222222233333332 2 45555566666899999999999999999999
Q ss_pred EEEEeCCCCCCCHHhHHHHHHHHHHHhC-CCeEEEEecCcchhh-ccCEEEEEeCCEEEEecChhhHhcC
Q 000984 543 ILLLDEATSALDAESEKVVQEALDRIMV-NRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKGTHSKLVED 610 (1198)
Q Consensus 543 illlDe~ts~lD~~~~~~i~~~i~~~~~-~~t~i~itH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~~ 610 (1198)
+++||||||+||..+.+.+++-+..+.. ++++|+.||.++.++ -||+|+++++|+++..|+++++.+.
T Consensus 154 i~vlDEP~sGLDi~~~r~~~dfi~q~k~egr~viFSSH~m~EvealCDrvivlh~Gevv~~gs~~~l~~r 223 (245)
T COG4555 154 ILVLDEPTSGLDIRTRRKFHDFIKQLKNEGRAVIFSSHIMQEVEALCDRVIVLHKGEVVLEGSIEALDAR 223 (245)
T ss_pred eEEEcCCCCCccHHHHHHHHHHHHHhhcCCcEEEEecccHHHHHHhhheEEEEecCcEEEcCCHHHHHHH
Confidence 9999999999999999999999988875 899999999999998 5999999999999999999988653
|
|
| >TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-37 Score=336.35 Aligned_cols=201 Identities=31% Similarity=0.502 Sum_probs=169.6
Q ss_pred EEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcceEE
Q 000984 385 ELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGL 464 (1198)
Q Consensus 385 ~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~~ 464 (1198)
+++|++++|+. .++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.+ .+++.++|
T Consensus 2 ~~~~l~~~~~~-----~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~--~~~~~i~~ 74 (213)
T TIGR01277 2 ALDKVRYEYEH-----LPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLA--PYQRPVSM 74 (213)
T ss_pred eEEeeeEEeCC-----cceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccCC--hhccceEE
Confidence 68999999952 468999999999999999999999999999999999999999999999987643 35778999
Q ss_pred EcCCCCCCc-ccHHHHHhcCC-CCC-----CHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhh
Q 000984 465 VSQEPVLFT-GSIKDNIAYGK-DDA-----TTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAI 537 (1198)
Q Consensus 465 v~Q~~~l~~-~ti~~Ni~~~~-~~~-----~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal 537 (1198)
++|+|.+|. .|++||+.++. +.. .++++.++++..++. ........+||||||||++||||+
T Consensus 75 v~q~~~~~~~~t~~en~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~~~~LS~G~~qrl~laral 143 (213)
T TIGR01277 75 LFQENNLFAHLTVRQNIGLGLHPGLKLNAEQQEKVVDAAQQVGIA-----------DYLDRLPEQLSGGQRQRVALARCL 143 (213)
T ss_pred EeccCccCCCCcHHHHHHhHhhccCCccHHHHHHHHHHHHHcCcH-----------HHhhCCcccCCHHHHHHHHHHHHH
Confidence 999999886 59999998642 111 122334444444443 334444568999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhC--CCeEEEEecCcchhhc-cCEEEEEeCCEEEEecC
Q 000984 538 LKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGT 603 (1198)
Q Consensus 538 ~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~ 603 (1198)
+++|+++||||||++||+.+.+.+.+.|+++.+ ++|+|++||+++.+.. ||++++|++|++++.|.
T Consensus 144 ~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~tii~vsh~~~~~~~~~d~v~~l~~g~i~~~~~ 212 (213)
T TIGR01277 144 VRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHLSDARAIASQIAVVSQGKIKVVSD 212 (213)
T ss_pred hcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCeEEEEECCeEEEecC
Confidence 999999999999999999999999999988753 6899999999998865 99999999999998874
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found. |
| >TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-38 Score=355.87 Aligned_cols=204 Identities=22% Similarity=0.432 Sum_probs=170.7
Q ss_pred CccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcceEEEcCCCCCCcc-cHH
Q 000984 399 EQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTG-SIK 477 (1198)
Q Consensus 399 ~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~-ti~ 477 (1198)
.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. ....+|++++|+||++.++.. |++
T Consensus 6 ~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~-~~~~~~~~i~~~~q~~~~~~~~tv~ 84 (302)
T TIGR01188 6 FKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVR-EPRKVRRSIGIVPQYASVDEDLTGR 84 (302)
T ss_pred eeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccc-CHHHHHhhcEEecCCCCCCCCCcHH
Confidence 469999999999999999999999999999999999999999999999999876 345678899999999998864 999
Q ss_pred HHHhcCCCC--CCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhhccCCCEEEEeCCCCCCCH
Q 000984 478 DNIAYGKDD--ATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDA 555 (1198)
Q Consensus 478 ~Ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal~~~~~illlDe~ts~lD~ 555 (1198)
||+.+.... .+..+..+ ...+.++.+ |+.........+||||||||++||||++++|++|||||||++||+
T Consensus 85 e~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~ 157 (302)
T TIGR01188 85 ENLEMMGRLYGLPKDEAEE-----RAEELLELF--ELGEAADRPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDP 157 (302)
T ss_pred HHHHHHHHHcCCCHHHHHH-----HHHHHHHHc--CChhHhCCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCH
Confidence 999864211 12121111 112233333 444445556678999999999999999999999999999999999
Q ss_pred HhHHHHHHHHHHHh-CCCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChhhHhcC
Q 000984 556 ESEKVVQEALDRIM-VNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVED 610 (1198)
Q Consensus 556 ~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 610 (1198)
.+.+.+.+.++++. +++|+|++||+++.+.. ||+|++|++|++++.|+++++.+.
T Consensus 158 ~~~~~l~~~l~~~~~~g~tvi~~sH~~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~ 214 (302)
T TIGR01188 158 RTRRAIWDYIRALKEEGVTILLTTHYMEEADKLCDRIAIIDHGRIIAEGTPEELKRR 214 (302)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHHHHh
Confidence 99999999998875 46899999999999875 999999999999999999998653
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc. |
| >COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-38 Score=350.06 Aligned_cols=214 Identities=31% Similarity=0.537 Sum_probs=183.8
Q ss_pred cEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcce
Q 000984 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKI 462 (1198)
Q Consensus 383 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i 462 (1198)
.++++|++.+|+. +..+|+||||+|++||++|++||||||||||+++|+|++.|++|+|.++|.+...- ....|+++
T Consensus 4 ~i~~~~l~k~~~~--~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~-~~~~~~~i 80 (293)
T COG1131 4 VIEVRNLTKKYGG--DKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKE-PAKVRRRI 80 (293)
T ss_pred eeeecceEEEeCC--CCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccC-HHHHHhhe
Confidence 4788999999963 24699999999999999999999999999999999999999999999999988765 67788999
Q ss_pred EEEcCCCCCC-cccHHHHHhcCCCC------CCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHH
Q 000984 463 GLVSQEPVLF-TGSIKDNIAYGKDD------ATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIAR 535 (1198)
Q Consensus 463 ~~v~Q~~~l~-~~ti~~Ni~~~~~~------~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lAR 535 (1198)
||+||+|.++ .-|++||+.|...- ..++++.+.++..++.+ .-......||+|||||++||+
T Consensus 81 gy~~~~~~~~~~lT~~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~-----------~~~~~~~~lS~G~kqrl~ia~ 149 (293)
T COG1131 81 GYVPQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEELLELFGLED-----------KANKKVRTLSGGMKQRLSIAL 149 (293)
T ss_pred EEEccCCCCCccccHHHHHHHHHHHhCCChhHHHHHHHHHHHHcCCch-----------hhCcchhhcCHHHHHHHHHHH
Confidence 9999999977 46999999873211 12345555555554432 124456689999999999999
Q ss_pred hhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhC-C-CeEEEEecCcchhhc-cCEEEEEeCCEEEEecChhhHhcC
Q 000984 536 AILKDPRILLLDEATSALDAESEKVVQEALDRIMV-N-RTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVED 610 (1198)
Q Consensus 536 al~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~-~-~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 610 (1198)
||+.+|++|||||||++||+.+.+.+.+.|+++.+ + +||+++||.++.+.. ||+|++|++|+++..|+++++...
T Consensus 150 aL~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l~e~~~~~d~v~il~~G~~~~~g~~~~l~~~ 227 (293)
T COG1131 150 ALLHDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHILEEAEELCDRVIILNDGKIIAEGTPEELKEK 227 (293)
T ss_pred HHhcCCCEEEECCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcHHHHHHhCCEEEEEeCCEEEEeCCHHHHHHh
Confidence 99999999999999999999999999999998875 4 699999999999987 999999999999999999987643
|
|
| >PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-37 Score=345.89 Aligned_cols=221 Identities=28% Similarity=0.446 Sum_probs=183.8
Q ss_pred cEEEEeEEEEcCCC------CCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCH-
Q 000984 383 DIELRDVYFSYPAR------PNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQL- 455 (1198)
Q Consensus 383 ~i~~~~v~~~y~~~------~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~- 455 (1198)
.|+++|++++|+.. .++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+.
T Consensus 3 ~l~~~nl~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~sG~i~~~g~~~~~~~~~ 82 (268)
T PRK10419 3 LLNVSGLSHHYAHGGLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNRA 82 (268)
T ss_pred eEEEeceEEEecCCccccccCceeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccChh
Confidence 38899999999631 12579999999999999999999999999999999999999999999999999887765
Q ss_pred --HHHhcceEEEcCCCC--CC-cccHHHHHhcCCC---CCCHHHHHHHHHHhcHHHHHHhCCCCccc-hhcCCCCCCChH
Q 000984 456 --QWIRKKIGLVSQEPV--LF-TGSIKDNIAYGKD---DATTEEIRVATELANAAKFIDKLPQGIDT-LVGEHGTQLSGG 526 (1198)
Q Consensus 456 --~~~r~~i~~v~Q~~~--l~-~~ti~~Ni~~~~~---~~~~~~~~~~~~~~~~~~~i~~l~~g~~t-~v~~~g~~lSgG 526 (1198)
..+|+.++|++|++. ++ ..|+++|+.+... ..+..+ ....+.+.+..+ |+++ ..+.....||||
T Consensus 83 ~~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~-----~~~~~~~~l~~~--gl~~~~~~~~~~~LS~G 155 (268)
T PRK10419 83 QRKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHLLSLDKAE-----RLARASEMLRAV--DLDDSVLDKRPPQLSGG 155 (268)
T ss_pred HHHHHHhcEEEEEcChhhccCCCCCHHHHHHHHHHhhccCCHHH-----HHHHHHHHHHHc--CCChhHhhCCCccCChH
Confidence 346789999999984 43 4799999865311 111111 111233445544 6663 567778899999
Q ss_pred HHHHHhHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhC--CCeEEEEecCcchhhc-cCEEEEEeCCEEEEecC
Q 000984 527 QKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGT 603 (1198)
Q Consensus 527 qkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~ 603 (1198)
||||++||||++.+|++|||||||++||+.+.+.+.+.|+++.+ ++|+|++||+++.+.. ||+|++|++|++++.|+
T Consensus 156 e~qrl~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~~g~ 235 (268)
T PRK10419 156 QLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLRLVERFCQRVMVMDNGQIVETQP 235 (268)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHHcCcEEEEEECCHHHHHHhCCEEEEEECCEEeeeCC
Confidence 99999999999999999999999999999999999999988754 7899999999999975 99999999999999999
Q ss_pred hhhHhcC
Q 000984 604 HSKLVED 610 (1198)
Q Consensus 604 ~~~l~~~ 610 (1198)
++++...
T Consensus 236 ~~~~~~~ 242 (268)
T PRK10419 236 VGDKLTF 242 (268)
T ss_pred hhhccCC
Confidence 9998754
|
|
| >PRK11248 tauB taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-37 Score=344.02 Aligned_cols=207 Identities=28% Similarity=0.469 Sum_probs=171.9
Q ss_pred EEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcceE
Q 000984 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIG 463 (1198)
Q Consensus 384 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~ 463 (1198)
++++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++... +..++
T Consensus 2 l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~-----~~~~~ 73 (255)
T PRK11248 2 LQISHLYADYGG---KPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGP-----GAERG 73 (255)
T ss_pred EEEEEEEEEeCC---eeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCC-----CCcEE
Confidence 789999999963 4699999999999999999999999999999999999999999999999987642 24699
Q ss_pred EEcCCCCCCc-ccHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhhccC
Q 000984 464 LVSQEPVLFT-GSIKDNIAYGKDD--ATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKD 540 (1198)
Q Consensus 464 ~v~Q~~~l~~-~ti~~Ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal~~~ 540 (1198)
|++|++.+|. .|+++|+.++... ....+.. ..+.+.++.+ |++........+||||||||++||||++.+
T Consensus 74 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~-----~~~~~~l~~~--gl~~~~~~~~~~LSgGq~qrl~laral~~~ 146 (255)
T PRK11248 74 VVFQNEGLLPWRNVQDNVAFGLQLAGVEKMQRL-----EIAHQMLKKV--GLEGAEKRYIWQLSGGQRQRVGIARALAAN 146 (255)
T ss_pred EEeCCCccCCCCcHHHHHHhHHHHcCCCHHHHH-----HHHHHHHHHc--CChhHhhCChhhCCHHHHHHHHHHHHHhcC
Confidence 9999999886 6999999875211 1221111 1122334444 455455566789999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHhHHHHHHHHHHHh--CCCeEEEEecCcchhhc-cCEEEEEe--CCEEEEecChh
Q 000984 541 PRILLLDEATSALDAESEKVVQEALDRIM--VNRTTVIVAHRLSTVRN-ADMIAVIH--RGKIVEKGTHS 605 (1198)
Q Consensus 541 ~~illlDe~ts~lD~~~~~~i~~~i~~~~--~~~t~i~itH~~~~~~~-~d~i~~l~--~G~i~~~g~~~ 605 (1198)
|++|||||||++||+.+.+.+.+.|+++. .++|+|++||+++.+.. ||+|++|+ +|++++.++.+
T Consensus 147 p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~~~G~i~~~~~~~ 216 (255)
T PRK11248 147 PQLLLLDEPFGALDAFTREQMQTLLLKLWQETGKQVLLITHDIEEAVFMATELVLLSPGPGRVVERLPLN 216 (255)
T ss_pred CCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCcEEEEEecCC
Confidence 99999999999999999999999998864 37899999999998865 99999998 59999987653
|
|
| >TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-37 Score=358.41 Aligned_cols=214 Identities=33% Similarity=0.519 Sum_probs=179.1
Q ss_pred eEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcC----HHHHhcceE
Q 000984 388 DVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQ----LQWIRKKIG 463 (1198)
Q Consensus 388 ~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~----~~~~r~~i~ 463 (1198)
|++++|++ . .+ |+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.. ....|++++
T Consensus 4 ~l~~~~~~---~-~~-~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~~i~ 78 (354)
T TIGR02142 4 RFSKRLGD---F-SL-DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIG 78 (354)
T ss_pred EEEEEECC---E-EE-EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccCccccccchhhCCeE
Confidence 78999953 2 34 999999999999999999999999999999999999999999999986532 235678899
Q ss_pred EEcCCCCCCc-ccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhhccCCC
Q 000984 464 LVSQEPVLFT-GSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPR 542 (1198)
Q Consensus 464 ~v~Q~~~l~~-~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal~~~~~ 542 (1198)
|++|++.+|. .|++||+.++.......+.. ..+.+.++.+ |++........+||||||||++|||||+.+|+
T Consensus 79 ~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~-----~~~~~~l~~~--gL~~~~~~~~~~LSgGqkqRvalAraL~~~p~ 151 (354)
T TIGR02142 79 YVFQEARLFPHLSVRGNLRYGMKRARPSERR-----ISFERVIELL--GIGHLLGRLPGRLSGGEKQRVAIGRALLSSPR 151 (354)
T ss_pred EEecCCccCCCCcHHHHHHHHhhccChhHHH-----HHHHHHHHHc--CChhHhcCChhhCCHHHHHHHHHHHHHHcCCC
Confidence 9999999996 59999999864322221111 1122334444 66666677778999999999999999999999
Q ss_pred EEEEeCCCCCCCHHhHHHHHHHHHHHhC--CCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChhhHhcCCCc
Q 000984 543 ILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVEDPEG 613 (1198)
Q Consensus 543 illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~~~ 613 (1198)
+|||||||++||+.+.+.+.+.|+++.+ ++|+|++||+++.+.. ||+|++|++|++++.|+++++..++..
T Consensus 152 lllLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~~~ 225 (354)
T TIGR02142 152 LLLMDEPLAALDDPRKYEILPYLERLHAEFGIPILYVSHSLQEVLRLADRVVVLEDGRVAAAGPIAEVWASPDL 225 (354)
T ss_pred EEEEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCCEEEEECCHHHHhcCcCc
Confidence 9999999999999999999999988754 6899999999998865 999999999999999999999876443
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter. |
| >cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-37 Score=331.00 Aligned_cols=191 Identities=23% Similarity=0.381 Sum_probs=163.4
Q ss_pred cEEEEeEEEEcCCC-CCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCC---CCCCeEEECCeecCCcCHHHH
Q 000984 383 DIELRDVYFSYPAR-PNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYD---PQAGEVLIDGINLKEFQLQWI 458 (1198)
Q Consensus 383 ~i~~~~v~~~y~~~-~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~---~~~G~i~i~g~~~~~~~~~~~ 458 (1198)
.+.++|++|.|+.. .++++|+|+||++++||+++|+||||||||||+++|.|+++ |++|+|.++|.++...+ ...
T Consensus 3 ~~~~~~~~~~~~~~~~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~-~~~ 81 (202)
T cd03233 3 TLSWRNISFTTGKGRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFA-EKY 81 (202)
T ss_pred eEEEEccEEEeccCCCCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccch-hhh
Confidence 37899999999864 34679999999999999999999999999999999999999 89999999999987764 356
Q ss_pred hcceEEEcCCCCCCc-ccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhh
Q 000984 459 RKKIGLVSQEPVLFT-GSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAI 537 (1198)
Q Consensus 459 r~~i~~v~Q~~~l~~-~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal 537 (1198)
+++++|++|++.+|. .|++||+.++... . ..+....||||||||++||||+
T Consensus 82 ~~~i~~~~q~~~~~~~~tv~~~l~~~~~~------~----------------------~~~~~~~LS~Ge~qrl~laral 133 (202)
T cd03233 82 PGEIIYVSEEDVHFPTLTVRETLDFALRC------K----------------------GNEFVRGISGGERKRVSIAEAL 133 (202)
T ss_pred cceEEEEecccccCCCCcHHHHHhhhhhh------c----------------------cccchhhCCHHHHHHHHHHHHH
Confidence 778999999998886 5999999864210 0 2234467999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhC--CCeEEEEecC-cchh-hccCEEEEEeCCEEEEec
Q 000984 538 LKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHR-LSTV-RNADMIAVIHRGKIVEKG 602 (1198)
Q Consensus 538 ~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~-~~~~-~~~d~i~~l~~G~i~~~g 602 (1198)
+++|+++||||||++||+++.+.+.+.++++.+ ++|+|+++|+ .+.+ ..||++++|++|++++.|
T Consensus 134 ~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~h~~~~~~~~~d~i~~l~~G~i~~~g 202 (202)
T cd03233 134 VSRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLYQASDEIYDLFDKVLVLYEGRQIYYG 202 (202)
T ss_pred hhCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHhCCeEEEEECCEEEecC
Confidence 999999999999999999999999999998754 4676776655 5665 459999999999998764
|
PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-37 Score=321.90 Aligned_cols=171 Identities=53% Similarity=0.927 Sum_probs=160.4
Q ss_pred EEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcceE
Q 000984 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIG 463 (1198)
Q Consensus 384 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~ 463 (1198)
++++|++++|++. ..++++|+||++++||.++|+||||||||||+++|.|+++|.+|+|.++|.++...+...+|++++
T Consensus 1 l~~~~l~~~~~~~-~~~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (171)
T cd03228 1 IEFKNVSFSYPGR-PKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLDLESLRKNIA 79 (171)
T ss_pred CEEEEEEEEcCCC-CcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhhhcCHHHHHhhEE
Confidence 4689999999643 236999999999999999999999999999999999999999999999999998888888889999
Q ss_pred EEcCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhhccCCCE
Q 000984 464 LVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRI 543 (1198)
Q Consensus 464 ~v~Q~~~l~~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal~~~~~i 543 (1198)
|++|+|.+|..|+.||+ ||||||||++||||++.+|++
T Consensus 80 ~~~~~~~~~~~t~~e~l------------------------------------------LS~G~~~rl~la~al~~~p~l 117 (171)
T cd03228 80 YVPQDPFLFSGTIRENI------------------------------------------LSGGQRQRIAIARALLRDPPI 117 (171)
T ss_pred EEcCCchhccchHHHHh------------------------------------------hCHHHHHHHHHHHHHhcCCCE
Confidence 99999999999999998 999999999999999999999
Q ss_pred EEEeCCCCCCCHHhHHHHHHHHHHHhCCCeEEEEecCcchhhccCEEEEEeCCE
Q 000984 544 LLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGK 597 (1198)
Q Consensus 544 lllDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~ 597 (1198)
+||||||++||+.+.+.+.+.++++.+++|+|++||+++.+..||++++|++|+
T Consensus 118 lllDEP~~gLD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~~~~l~~g~ 171 (171)
T cd03228 118 LILDEATSALDPETEALILEALRALAKGKTVIVIAHRLSTIRDADRIIVLDDGR 171 (171)
T ss_pred EEEECCCcCCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHhCCEEEEEcCCC
Confidence 999999999999999999999988877799999999999998899999999984
|
They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-37 Score=336.49 Aligned_cols=208 Identities=30% Similarity=0.474 Sum_probs=174.3
Q ss_pred EEEEeEEEEcCCCC-CCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHH---HHh
Q 000984 384 IELRDVYFSYPARP-NEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQ---WIR 459 (1198)
Q Consensus 384 i~~~~v~~~y~~~~-~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~---~~r 459 (1198)
++++|+++.|+... .+++|+|+||++++||+++|+|+||||||||+++|.|+++|++|+|.++|.++...+.. ..+
T Consensus 2 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (220)
T TIGR02982 2 ISIRNLNHYYGHGSLRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELVQLR 81 (220)
T ss_pred EEEEEEEEEccCCCcceeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEhHhcCHhHHHHHH
Confidence 68999999996421 25699999999999999999999999999999999999999999999999998776643 467
Q ss_pred cceEEEcCCCCCCc-ccHHHHHhcCCC---CCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHH
Q 000984 460 KKIGLVSQEPVLFT-GSIKDNIAYGKD---DATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIAR 535 (1198)
Q Consensus 460 ~~i~~v~Q~~~l~~-~ti~~Ni~~~~~---~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lAR 535 (1198)
+.++|++|+|.+|. .|+.+|+.++.. ..+.++... .+.+.++.+ |++........+||||||||++|||
T Consensus 82 ~~i~~~~q~~~~~~~~t~~~n~~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~lS~G~~qrv~lar 154 (220)
T TIGR02982 82 RNIGYIFQAHNLLGFLTARQNVQMALELQPNLSYQEARE-----RARAMLEAV--GLGDHLDYYPHNLSGGQKQRVAIAR 154 (220)
T ss_pred hheEEEcCChhhcCCCCHHHHHHHHHHhccCCCHHHHHH-----HHHHHHHHc--CChhhhhcChhhCCHHHHHHHHHHH
Confidence 89999999999886 799999987532 122222221 122334444 5555566667789999999999999
Q ss_pred hhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhC--CCeEEEEecCcchhhccCEEEEEeCCEE
Q 000984 536 AILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRNADMIAVIHRGKI 598 (1198)
Q Consensus 536 al~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~~~d~i~~l~~G~i 598 (1198)
|++++|+++||||||++||+++.+.+.+.++++.+ ++|+|++||+++....||+|++|++|++
T Consensus 155 al~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~~~~~~~~d~v~~l~~g~~ 219 (220)
T TIGR02982 155 ALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTHDNRILDVADRIVHMEDGKL 219 (220)
T ss_pred HHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHhhCCEEEEEECCEE
Confidence 99999999999999999999999999999988764 7999999999997777999999999986
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. |
| >cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-37 Score=322.53 Aligned_cols=170 Identities=34% Similarity=0.640 Sum_probs=156.5
Q ss_pred EEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcceE
Q 000984 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIG 463 (1198)
Q Consensus 384 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~ 463 (1198)
++++|++++|++ .++|+|+||++++||+++|+||||||||||+++|.|+++|++|+|.++|.++.+.+ ..+|++++
T Consensus 1 l~~~~l~~~~~~---~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~-~~~~~~i~ 76 (173)
T cd03230 1 IEVRNLSKRYGK---KTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEP-EEVKRRIG 76 (173)
T ss_pred CEEEEEEEEECC---eeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccch-HhhhccEE
Confidence 468999999963 35999999999999999999999999999999999999999999999999987665 56788999
Q ss_pred EEcCCCCCCcc-cHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhhccCCC
Q 000984 464 LVSQEPVLFTG-SIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPR 542 (1198)
Q Consensus 464 ~v~Q~~~l~~~-ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal~~~~~ 542 (1198)
|++|+|.+|.+ |++||+. ||||||||++||||++++|+
T Consensus 77 ~~~q~~~~~~~~tv~~~~~-----------------------------------------LS~G~~qrv~laral~~~p~ 115 (173)
T cd03230 77 YLPEEPSLYENLTVRENLK-----------------------------------------LSGGMKQRLALAQALLHDPE 115 (173)
T ss_pred EEecCCccccCCcHHHHhh-----------------------------------------cCHHHHHHHHHHHHHHcCCC
Confidence 99999998875 9999984 99999999999999999999
Q ss_pred EEEEeCCCCCCCHHhHHHHHHHHHHHh-CCCeEEEEecCcchhh-ccCEEEEEeCCEE
Q 000984 543 ILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVR-NADMIAVIHRGKI 598 (1198)
Q Consensus 543 illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~-~~d~i~~l~~G~i 598 (1198)
++||||||++||+.+.+.+.+.++++. ++.|+|++||+.+.+. .||++++|++|++
T Consensus 116 illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~~~~~~~d~i~~l~~g~i 173 (173)
T cd03230 116 LLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILEEAERLCDRVAILNNGRI 173 (173)
T ss_pred EEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhCCEEEEEeCCCC
Confidence 999999999999999999999998875 3589999999999887 5999999999974
|
In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-37 Score=341.72 Aligned_cols=224 Identities=27% Similarity=0.440 Sum_probs=182.5
Q ss_pred cEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCee-----cCCcCHHH
Q 000984 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGIN-----LKEFQLQW 457 (1198)
Q Consensus 383 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~-----~~~~~~~~ 457 (1198)
.|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+ +...+...
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 79 (253)
T TIGR02323 3 LLQVSGLSKSYGG---GKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEAE 79 (253)
T ss_pred eEEEeeeEEEeCC---ceEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEecccccccccccCCHHH
Confidence 4899999999963 358999999999999999999999999999999999999999999999987 66665543
Q ss_pred ----HhcceEEEcCCCC--C-CcccHHHHHhcCC---CCCCHHHHHHHHHHhcHHHHHHhCCCCcc-chhcCCCCCCChH
Q 000984 458 ----IRKKIGLVSQEPV--L-FTGSIKDNIAYGK---DDATTEEIRVATELANAAKFIDKLPQGID-TLVGEHGTQLSGG 526 (1198)
Q Consensus 458 ----~r~~i~~v~Q~~~--l-~~~ti~~Ni~~~~---~~~~~~~~~~~~~~~~~~~~i~~l~~g~~-t~v~~~g~~lSgG 526 (1198)
+++.++|++|+|. + +..|+.+|+.+.. ......+. ...+.+.++.+ |++ +........||||
T Consensus 80 ~~~~~~~~i~~~~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-----~~~~~~~l~~l--~l~~~~~~~~~~~LSgG 152 (253)
T TIGR02323 80 RRRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARHYGNI-----RAAAHDWLEEV--EIDPTRIDDLPRAFSGG 152 (253)
T ss_pred HHHhhhcceEEEEeCcccccCccccHHHHHHHHHHHhcccchHHH-----HHHHHHHHHHc--CCChhhhhcCchhcCHH
Confidence 2467999999984 2 2458888885321 10111111 12234556666 454 5677788899999
Q ss_pred HHHHHhHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhC--CCeEEEEecCcchhhc-cCEEEEEeCCEEEEecC
Q 000984 527 QKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGT 603 (1198)
Q Consensus 527 qkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~ 603 (1198)
||||++||||++++|++|||||||++||+.+.+.+.+.+++..+ +.|+|++||+++.+.. ||++++|++|++++.|+
T Consensus 153 ~~qrv~laral~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH~~~~~~~~~d~~~~l~~G~i~~~~~ 232 (253)
T TIGR02323 153 MQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDLGVARLLAQRLLVMQQGRVVESGL 232 (253)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEECC
Confidence 99999999999999999999999999999999999999988643 7899999999999875 99999999999999999
Q ss_pred hhhHhcCCCchhH
Q 000984 604 HSKLVEDPEGAYS 616 (1198)
Q Consensus 604 ~~~l~~~~~~~~~ 616 (1198)
++++..++...|.
T Consensus 233 ~~~~~~~~~~~~~ 245 (253)
T TIGR02323 233 TDQVLDDPQHPYT 245 (253)
T ss_pred HHHHhcCCCCHHH
Confidence 9998765433333
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se. |
| >PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-37 Score=340.93 Aligned_cols=216 Identities=29% Similarity=0.431 Sum_probs=176.6
Q ss_pred cEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCC----CCCeEEECCeecCCcCHHHH
Q 000984 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDP----QAGEVLIDGINLKEFQLQWI 458 (1198)
Q Consensus 383 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~----~~G~i~i~g~~~~~~~~~~~ 458 (1198)
.|+++|++++| . +++|+|+||++++||+++|+|+||||||||+++|+|+++| ++|+|.++|.++... +..
T Consensus 4 ~l~~~~l~~~~-~---~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~~--~~~ 77 (254)
T PRK10418 4 QIELRNIALQA-A---QPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPC--ALR 77 (254)
T ss_pred EEEEeCeEEEe-c---cceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeecccc--ccc
Confidence 48999999999 2 3599999999999999999999999999999999999999 999999999988632 222
Q ss_pred hcceEEEcCCCC-CCc--ccHHHHHhcC----CCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHH
Q 000984 459 RKKIGLVSQEPV-LFT--GSIKDNIAYG----KDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRI 531 (1198)
Q Consensus 459 r~~i~~v~Q~~~-l~~--~ti~~Ni~~~----~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri 531 (1198)
++.++|++|+|. .|. .|+.+|+.+. .....++++++.++..++.+ .++.++.....||||||||+
T Consensus 78 ~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~--------~~~~~~~~~~~LS~Gq~qrv 149 (254)
T PRK10418 78 GRKIATIMQNPRSAFNPLHTMHTHARETCLALGKPADDATLTAALEAVGLEN--------AARVLKLYPFEMSGGMLQRM 149 (254)
T ss_pred cceEEEEecCCccccCccccHHHHHHHHHHHcCCChHHHHHHHHHHHcCCCC--------hhhhhhcCCcccCHHHHHHH
Confidence 467999999984 443 5888887531 11122234444444433221 11245777789999999999
Q ss_pred hHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhC--CCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChhhHh
Q 000984 532 AIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLV 608 (1198)
Q Consensus 532 ~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~ 608 (1198)
+||||++++|++|||||||++||+.+.+.+.+.++++.+ ++|+|++||+++.+.. ||++++|++|++++.|+++++.
T Consensus 150 ~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 229 (254)
T PRK10418 150 MIALALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDMGVVARLADDVAVMSHGRIVEQGDVETLF 229 (254)
T ss_pred HHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHh
Confidence 999999999999999999999999999999999988753 6899999999999864 9999999999999999999987
Q ss_pred cCCC
Q 000984 609 EDPE 612 (1198)
Q Consensus 609 ~~~~ 612 (1198)
+++.
T Consensus 230 ~~~~ 233 (254)
T PRK10418 230 NAPK 233 (254)
T ss_pred hCCC
Confidence 6543
|
|
| >cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-37 Score=322.22 Aligned_cols=172 Identities=42% Similarity=0.684 Sum_probs=158.3
Q ss_pred EEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcC--HHHHhcc
Q 000984 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQ--LQWIRKK 461 (1198)
Q Consensus 384 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~--~~~~r~~ 461 (1198)
|+++|++++|+. +++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.+ ...+++.
T Consensus 1 i~~~~l~~~~~~---~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 77 (178)
T cd03229 1 LELKNVSKRYGQ---KTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLEDELPPLRRR 77 (178)
T ss_pred CEEEEEEEEECC---eEEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccchhHHHHhhc
Confidence 478999999963 46999999999999999999999999999999999999999999999999998775 5667889
Q ss_pred eEEEcCCCCCCc-ccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhhccC
Q 000984 462 IGLVSQEPVLFT-GSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKD 540 (1198)
Q Consensus 462 i~~v~Q~~~l~~-~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal~~~ 540 (1198)
++|++|+|.+|. .|++||+.+. ||||||||++||||++++
T Consensus 78 i~~~~q~~~~~~~~t~~~~l~~~---------------------------------------lS~G~~qr~~la~al~~~ 118 (178)
T cd03229 78 IGMVFQDFALFPHLTVLENIALG---------------------------------------LSGGQQQRVALARALAMD 118 (178)
T ss_pred EEEEecCCccCCCCCHHHheeec---------------------------------------CCHHHHHHHHHHHHHHCC
Confidence 999999999885 5999999753 999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHhHHHHHHHHHHHhC--CCeEEEEecCcchhhc-cCEEEEEeCCE
Q 000984 541 PRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRN-ADMIAVIHRGK 597 (1198)
Q Consensus 541 ~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~~-~d~i~~l~~G~ 597 (1198)
|+++||||||++||+.+...+.+.++++.+ ++|+|++||+++.+.. ||+|++|++|+
T Consensus 119 p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~ 178 (178)
T cd03229 119 PDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLDEAARLADRVVVLRDGK 178 (178)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeCCC
Confidence 999999999999999999999999988765 5899999999999984 99999999984
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-37 Score=331.42 Aligned_cols=202 Identities=33% Similarity=0.516 Sum_probs=169.0
Q ss_pred eEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCc----CHHHHhcceE
Q 000984 388 DVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEF----QLQWIRKKIG 463 (1198)
Q Consensus 388 ~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~----~~~~~r~~i~ 463 (1198)
|++++|++ ..+ |+||++++ |+++|+||||||||||+++|+|+++|++|+|.++|.++.+. +....+++++
T Consensus 5 ~l~~~~~~---~~~--~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~ 78 (214)
T cd03297 5 DIEKRLPD---FTL--KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQRKIG 78 (214)
T ss_pred eeeEecCC---eee--CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEecccccchhhhhhHhhcEE
Confidence 89999964 234 99999999 99999999999999999999999999999999999988643 2345678899
Q ss_pred EEcCCCCCCc-ccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhhccCCC
Q 000984 464 LVSQEPVLFT-GSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPR 542 (1198)
Q Consensus 464 ~v~Q~~~l~~-~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal~~~~~ 542 (1198)
|++|++.+|. .|+++|+.++......++. ...+.+.++.+ |++.........||||||||++||||++.+|+
T Consensus 79 ~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~-----~~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~ 151 (214)
T cd03297 79 LVFQQYALFPHLNVRENLAFGLKRKRNRED-----RISVDELLDLL--GLDHLLNRYPAQLSGGEKQRVALARALAAQPE 151 (214)
T ss_pred EEecCCccCCCCCHHHHHHHHHhhCCHHHH-----HHHHHHHHHHc--CCHhHhhcCcccCCHHHHHHHHHHHHHhcCCC
Confidence 9999999985 6999999875432222111 11223445554 66666677788999999999999999999999
Q ss_pred EEEEeCCCCCCCHHhHHHHHHHHHHHhC--CCeEEEEecCcchhh-ccCEEEEEeCCEEEEec
Q 000984 543 ILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKG 602 (1198)
Q Consensus 543 illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~-~~d~i~~l~~G~i~~~g 602 (1198)
++||||||++||+.+.+.+.+.++++.+ ++|+|++||+++.+. .||++++|++|++++.|
T Consensus 152 llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g 214 (214)
T cd03297 152 LLLLDEPFSALDRALRLQLLPELKQIKKNLNIPVIFVTHDLSEAEYLADRIVVMEDGRLQYIG 214 (214)
T ss_pred EEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEecCHHHHHHhcCEEEEEECCEEEecC
Confidence 9999999999999999999999988753 689999999999886 49999999999998765
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-37 Score=316.37 Aligned_cols=163 Identities=30% Similarity=0.493 Sum_probs=150.1
Q ss_pred EEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcceE
Q 000984 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIG 463 (1198)
Q Consensus 384 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~ 463 (1198)
|+++|++++|+.. +++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|. ++++
T Consensus 1 i~~~~~~~~~~~~--~~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~-----------~~i~ 67 (166)
T cd03223 1 IELENLSLATPDG--RVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEG-----------EDLL 67 (166)
T ss_pred CEEEEEEEEcCCC--CeeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCC-----------ceEE
Confidence 4789999999632 46999999999999999999999999999999999999999999999873 5899
Q ss_pred EEcCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhhccCCCE
Q 000984 464 LVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRI 543 (1198)
Q Consensus 464 ~v~Q~~~l~~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal~~~~~i 543 (1198)
|++|+|.++++|++||+.++ ....||||||||++||||++++|++
T Consensus 68 ~~~q~~~~~~~tv~~nl~~~-----------------------------------~~~~LS~G~~~rv~laral~~~p~~ 112 (166)
T cd03223 68 FLPQRPYLPLGTLREQLIYP-----------------------------------WDDVLSGGEQQRLAFARLLLHKPKF 112 (166)
T ss_pred EECCCCccccccHHHHhhcc-----------------------------------CCCCCCHHHHHHHHHHHHHHcCCCE
Confidence 99999999999999999863 2468999999999999999999999
Q ss_pred EEEeCCCCCCCHHhHHHHHHHHHHHhCCCeEEEEecCcchhhccCEEEEEeCC
Q 000984 544 LLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRG 596 (1198)
Q Consensus 544 lllDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G 596 (1198)
+||||||++||+++.+.+.+.++++ ++|+|++||+.+....||+|++|++|
T Consensus 113 lllDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsh~~~~~~~~d~i~~l~~~ 163 (166)
T cd03223 113 VFLDEATSALDEESEDRLYQLLKEL--GITVISVGHRPSLWKFHDRVLDLDGE 163 (166)
T ss_pred EEEECCccccCHHHHHHHHHHHHHh--CCEEEEEeCChhHHhhCCEEEEEcCC
Confidence 9999999999999999999999876 58999999999988789999999876
|
The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt |
| >cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-37 Score=325.51 Aligned_cols=183 Identities=29% Similarity=0.500 Sum_probs=161.4
Q ss_pred cEEEEeEEEEcCCC---CCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccC--CCCCCeEEECCeecCCcCHHH
Q 000984 383 DIELRDVYFSYPAR---PNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFY--DPQAGEVLIDGINLKEFQLQW 457 (1198)
Q Consensus 383 ~i~~~~v~~~y~~~---~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~--~~~~G~i~i~g~~~~~~~~~~ 457 (1198)
.|+++|++++|+.. .++++|+|+||++++||+++|+||||||||||+++|+|++ +|.+|+|.+||.++.. ..
T Consensus 3 ~l~~~~ls~~~~~~~~~~~~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~~~g~~~~~---~~ 79 (194)
T cd03213 3 TLSFRNLTVTVKSSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDK---RS 79 (194)
T ss_pred EEEEEeeEEEEecCCCcccccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEeCch---Hh
Confidence 48999999999742 1256999999999999999999999999999999999999 9999999999998864 36
Q ss_pred HhcceEEEcCCCCCCc-ccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHh
Q 000984 458 IRKKIGLVSQEPVLFT-GSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARA 536 (1198)
Q Consensus 458 ~r~~i~~v~Q~~~l~~-~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARa 536 (1198)
++++++|++|++.+|. .|++||+.++.. +. .||||||||++||||
T Consensus 80 ~~~~i~~~~q~~~~~~~~t~~~~i~~~~~-------------------~~---------------~LS~G~~qrv~lara 125 (194)
T cd03213 80 FRKIIGYVPQDDILHPTLTVRETLMFAAK-------------------LR---------------GLSGGERKRVSIALE 125 (194)
T ss_pred hhheEEEccCcccCCCCCcHHHHHHHHHH-------------------hc---------------cCCHHHHHHHHHHHH
Confidence 6788999999999886 599999975310 00 799999999999999
Q ss_pred hccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh-CCCeEEEEecCcc-hhh-ccCEEEEEeCCEEEEec
Q 000984 537 ILKDPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLS-TVR-NADMIAVIHRGKIVEKG 602 (1198)
Q Consensus 537 l~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~-~~~-~~d~i~~l~~G~i~~~g 602 (1198)
++++|+++||||||++||+.+.+.+.+.++++. +++|+|++||+++ .+. .||++++|++|++++.|
T Consensus 126 l~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~v~~l~~G~i~~~~ 194 (194)
T cd03213 126 LVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQPSSEIFELFDKLLLLSQGRVIYFG 194 (194)
T ss_pred HHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchHHHHHhcCEEEEEeCCEEEecC
Confidence 999999999999999999999999999998875 4789999999996 454 59999999999998754
|
DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. |
| >COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-37 Score=353.98 Aligned_cols=227 Identities=32% Similarity=0.526 Sum_probs=187.3
Q ss_pred ccEEEEeEEEEcCCCC--------CCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCee--cC
Q 000984 382 GDIELRDVYFSYPARP--------NEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGIN--LK 451 (1198)
Q Consensus 382 g~i~~~~v~~~y~~~~--------~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~--~~ 451 (1198)
.-++++|++.+|..+. ...+++||||++++||++||||+||||||||.++|+|+.+|++|+|.++|.| ..
T Consensus 279 ~ll~V~~l~k~y~~~~~~~~~~~~~~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~P~~G~i~~~g~~~~~~ 358 (539)
T COG1123 279 PLLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLDLT 358 (539)
T ss_pred ceeEeeeeeeeeccccccccccccceeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEEeCcccccc
Confidence 3478999999997421 2468999999999999999999999999999999999999999999999977 23
Q ss_pred CcCHHHHhcceEEEcCCCCCC---cccHHHHHhcCCCC---CC-H---HHHHHHHHHhcHHHHHHhCCCCccc-hhcCCC
Q 000984 452 EFQLQWIRKKIGLVSQEPVLF---TGSIKDNIAYGKDD---AT-T---EEIRVATELANAAKFIDKLPQGIDT-LVGEHG 520 (1198)
Q Consensus 452 ~~~~~~~r~~i~~v~Q~~~l~---~~ti~~Ni~~~~~~---~~-~---~~~~~~~~~~~~~~~i~~l~~g~~t-~v~~~g 520 (1198)
.-+....|+++-+|+|||.-. ..||+++|.-.... .. . +++.+.++.+ |+.. ......
T Consensus 359 ~~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL~~~~~~~~~~~~~rv~~ll~~V-----------gL~~~~l~ryP 427 (539)
T COG1123 359 GGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGGGSGAERRARVAELLELV-----------GLPPEFLDRYP 427 (539)
T ss_pred cchhhhhhhheEEEEeCcccccCccccHHHHHHhHHhhhcccchHHHHHHHHHHHHHc-----------CCCHHHHhcCc
Confidence 233556788999999999633 46999999743211 11 1 1122223333 3333 467778
Q ss_pred CCCChHHHHHHhHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhC--CCeEEEEecCcchhhc-cCEEEEEeCCE
Q 000984 521 TQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRN-ADMIAVIHRGK 597 (1198)
Q Consensus 521 ~~lSgGqkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~~-~d~i~~l~~G~ 597 (1198)
..||||||||+||||||..+|+++|+|||||+||+-+...+.+.++++.+ +.|.|+|||++..++. ||||+||++|+
T Consensus 428 ~elSGGQrQRvaIARALa~~P~lli~DEp~SaLDvsvqa~VlnLl~~lq~e~g~t~lfISHDl~vV~~i~drv~vm~~G~ 507 (539)
T COG1123 428 HELSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEELGLTYLFISHDLAVVRYIADRVAVMYDGR 507 (539)
T ss_pred hhcCcchhHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHhhCceEEEEECCe
Confidence 89999999999999999999999999999999999999999999988754 5899999999999987 99999999999
Q ss_pred EEEecChhhHhcCCCchhHHHH
Q 000984 598 IVEKGTHSKLVEDPEGAYSQLI 619 (1198)
Q Consensus 598 i~~~g~~~~l~~~~~~~~~~~~ 619 (1198)
|+|.|+.+++.+.+...|.+..
T Consensus 508 iVE~G~~~~v~~~p~h~Ytr~L 529 (539)
T COG1123 508 IVEEGPTEKVFENPQHPYTRKL 529 (539)
T ss_pred EEEeCCHHHHhcCCCChHHHHH
Confidence 9999999999998877777654
|
|
| >TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-37 Score=333.28 Aligned_cols=205 Identities=26% Similarity=0.431 Sum_probs=172.9
Q ss_pred EEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcceE
Q 000984 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIG 463 (1198)
Q Consensus 384 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~ 463 (1198)
++++|++++|+. +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.... ++.++
T Consensus 1 l~l~~v~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~~~~~----~~~~~ 73 (223)
T TIGR03740 1 LETKNLSKRFGK---QTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTRKD----LHKIG 73 (223)
T ss_pred CEEEeEEEEECC---EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEeccccc----cccEE
Confidence 468999999963 46999999999999999999999999999999999999999999999998875322 24799
Q ss_pred EEcCCCCCCc-ccHHHHHhcCCC--CCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhhccC
Q 000984 464 LVSQEPVLFT-GSIKDNIAYGKD--DATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKD 540 (1198)
Q Consensus 464 ~v~Q~~~l~~-~ti~~Ni~~~~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal~~~ 540 (1198)
|++|++.++. .|++||+.++.. ..+++++.+.++..++ +........+||||||||++||||++.+
T Consensus 74 ~~~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~~~~l-----------~~~~~~~~~~LS~G~~~rv~laral~~~ 142 (223)
T TIGR03740 74 SLIESPPLYENLTARENLKVHTTLLGLPDSRIDEVLNIVDL-----------TNTGKKKAKQFSLGMKQRLGIAIALLNH 142 (223)
T ss_pred EEcCCCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHcCC-----------cHHHhhhHhhCCHHHHHHHHHHHHHhcC
Confidence 9999998885 699999986321 1234444444444443 3334445578999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHhHHHHHHHHHHHh-CCCeEEEEecCcchhh-ccCEEEEEeCCEEEEecChhh
Q 000984 541 PRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKGTHSK 606 (1198)
Q Consensus 541 ~~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~-~~d~i~~l~~G~i~~~g~~~~ 606 (1198)
|+++||||||++||+.+.+.+.+.++++. +++|+|++||+++.+. .||+|++|++|++++.|++++
T Consensus 143 p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~ 210 (223)
T TIGR03740 143 PKLLILDEPTNGLDPIGIQELRELIRSFPEQGITVILSSHILSEVQQLADHIGIISEGVLGYQGKINK 210 (223)
T ss_pred CCEEEECCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEeCCEEEEecChhh
Confidence 99999999999999999999999998875 4689999999999986 599999999999999998764
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. |
| >COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-37 Score=328.66 Aligned_cols=228 Identities=28% Similarity=0.490 Sum_probs=182.7
Q ss_pred EEEEeEEEEcCCCC-CCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCC-C----CCCeEEECCeecCCcCHHH
Q 000984 384 IELRDVYFSYPARP-NEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYD-P----QAGEVLIDGINLKEFQLQW 457 (1198)
Q Consensus 384 i~~~~v~~~y~~~~-~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~-~----~~G~i~i~g~~~~~~~~~~ 457 (1198)
++++|++.+|+... ...+++||||++++||.+||||.|||||||+.++|+|+++ | .+|+|.++|.|+-.++.+.
T Consensus 2 L~v~nL~v~f~~~~g~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~~ 81 (316)
T COG0444 2 LEVKNLSVSFPTDAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEKE 81 (316)
T ss_pred ceEeeeEEEEecCCccEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHHH
Confidence 57899999997543 2468999999999999999999999999999999999997 4 5799999999999998764
Q ss_pred ---Hh-cceEEEcCCCC-CCc--ccH----HHHHhcCCCCCCH----HHHHHHHHHhcHHHHHHhCCCCccchhcCCCCC
Q 000984 458 ---IR-KKIGLVSQEPV-LFT--GSI----KDNIAYGKDDATT----EEIRVATELANAAKFIDKLPQGIDTLVGEHGTQ 522 (1198)
Q Consensus 458 ---~r-~~i~~v~Q~~~-l~~--~ti----~~Ni~~~~~~~~~----~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~ 522 (1198)
+| +.|++|+|||- -+| -|| .|-+.......+. ++..+.++.+++.+ -+..+..-...
T Consensus 82 ~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~--------~~~~~~~YPhe 153 (316)
T COG0444 82 LRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPD--------PERRLKSYPHE 153 (316)
T ss_pred HHhhcCceEEEEEcCchhhcCChhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHcCCCC--------HHHHHhhCCcc
Confidence 44 57999999983 233 233 3444321111011 22333333333321 12345667789
Q ss_pred CChHHHHHHhHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhC--CCeEEEEecCcchhhc-cCEEEEEeCCEEE
Q 000984 523 LSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRN-ADMIAVIHRGKIV 599 (1198)
Q Consensus 523 lSgGqkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~~-~d~i~~l~~G~i~ 599 (1198)
||||||||+.||-|+..+|++||.||||+|||..+.++|.+.++++.+ +.++|+|||++..+.. ||||+||..|+|+
T Consensus 154 lSGGMrQRV~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e~~~aiilITHDl~vva~~aDri~VMYaG~iV 233 (316)
T COG0444 154 LSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDLGVVAEIADRVAVMYAGRIV 233 (316)
T ss_pred cCCcHHHHHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcceEEEEECcEEE
Confidence 999999999999999999999999999999999999999999988764 7899999999998865 9999999999999
Q ss_pred EecChhhHhcCCCchhHHHH
Q 000984 600 EKGTHSKLVEDPEGAYSQLI 619 (1198)
Q Consensus 600 ~~g~~~~l~~~~~~~~~~~~ 619 (1198)
|.|+.+++.+++...|.+..
T Consensus 234 E~g~~~~i~~~P~HPYT~~L 253 (316)
T COG0444 234 EEGPVEEIFKNPKHPYTRGL 253 (316)
T ss_pred EeCCHHHHhcCCCChHHHHH
Confidence 99999999998887777654
|
|
| >cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos) | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-37 Score=321.55 Aligned_cols=172 Identities=24% Similarity=0.459 Sum_probs=156.4
Q ss_pred cEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCH-HHHhcc
Q 000984 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQL-QWIRKK 461 (1198)
Q Consensus 383 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~-~~~r~~ 461 (1198)
.|+++|++++| +|+|+||++++||+++|+|+||||||||+++|.|+++|++|+|.++|.++...+. ...|++
T Consensus 4 ~l~~~~l~~~~-------~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 76 (182)
T cd03215 4 VLEVRGLSVKG-------AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDAIRAG 76 (182)
T ss_pred EEEEeccEEEe-------eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccCHHHHHhCC
Confidence 48999999988 8999999999999999999999999999999999999999999999999988764 456788
Q ss_pred eEEEcCCC----CCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhh
Q 000984 462 IGLVSQEP----VLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAI 537 (1198)
Q Consensus 462 i~~v~Q~~----~l~~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal 537 (1198)
++|++|+| .++..|++||+.++.. ||||||||++||||+
T Consensus 77 i~~~~q~~~~~~~~~~~t~~e~l~~~~~-------------------------------------LS~G~~qrl~la~al 119 (182)
T cd03215 77 IAYVPEDRKREGLVLDLSVAENIALSSL-------------------------------------LSGGNQQKVVLARWL 119 (182)
T ss_pred eEEecCCcccCcccCCCcHHHHHHHHhh-------------------------------------cCHHHHHHHHHHHHH
Confidence 99999995 3446799999986421 999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh-CCCeEEEEecCcchhhc-cCEEEEEeCCEE
Q 000984 538 LKDPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRN-ADMIAVIHRGKI 598 (1198)
Q Consensus 538 ~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i 598 (1198)
+++|+++||||||++||+++.+.+.+.++++. +++|+|++||+++.+.. ||++++|++|++
T Consensus 120 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~d~v~~l~~G~i 182 (182)
T cd03215 120 ARDPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVLLISSELDELLGLCDRILVMYEGRI 182 (182)
T ss_pred ccCCCEEEECCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEecCCcC
Confidence 99999999999999999999999999998875 47899999999998876 999999999974
|
The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. |
| >COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-37 Score=316.70 Aligned_cols=220 Identities=29% Similarity=0.517 Sum_probs=188.5
Q ss_pred EEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHH-hcce
Q 000984 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWI-RKKI 462 (1198)
Q Consensus 384 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~-r~~i 462 (1198)
++.++++.+|+. -.+++|+||++++||+++|+|||||||||++++|.|+|+|++|+|.++|.||..++++.+ |..|
T Consensus 5 L~v~~l~k~FGG---l~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~~G~v~~~G~~it~l~p~~iar~Gi 81 (250)
T COG0411 5 LEVRGLSKRFGG---LTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHRIARLGI 81 (250)
T ss_pred eeeccceeecCC---EEEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccccCCCceEEECCcccCCCCHHHHHhccc
Confidence 578999999963 469999999999999999999999999999999999999999999999999999998876 5679
Q ss_pred EEEcCCCCCCc-ccHHHHHhcCCCCC------------CHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHH
Q 000984 463 GLVSQEPVLFT-GSIKDNIAYGKDDA------------TTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQ 529 (1198)
Q Consensus 463 ~~v~Q~~~l~~-~ti~~Ni~~~~~~~------------~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkq 529 (1198)
+--+|.+.+|. .||-||+..+.... ..++ .++.+ .+.+.++.+ |++..-.+...+||+||+.
T Consensus 82 ~RTFQ~~rlF~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e-~~~~e--~A~~~Le~v--gL~~~a~~~A~~LsyG~qR 156 (250)
T COG0411 82 ARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEE-REARE--RARELLEFV--GLGELADRPAGNLSYGQQR 156 (250)
T ss_pred eeecccccccCCCcHHHHHHHHhhhhhhhhhhhccccchhhH-HHHHH--HHHHHHHHc--CCchhhcchhhcCChhHhH
Confidence 99999999995 69999999763211 0111 11111 112334443 7888888888899999999
Q ss_pred HHhHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhC--CCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChhh
Q 000984 530 RIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSK 606 (1198)
Q Consensus 530 ri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~ 606 (1198)
|+.|||||..+|++|+||||.+++.+.....+.+.|+++.+ +.|+++|.|+++.+.. ||||+||+.|+++.+|+|+|
T Consensus 157 ~LEIArALa~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~~g~tillIEHdM~~Vm~l~dri~Vl~~G~~IAeG~P~e 236 (250)
T COG0411 157 RLEIARALATQPKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILLIEHDMKLVMGLADRIVVLNYGEVIAEGTPEE 236 (250)
T ss_pred HHHHHHHHhcCCCEEEecCccCCCCHHHHHHHHHHHHHHHhcCCcEEEEEEeccHHHhhhccEEEeccCCcCcccCCHHH
Confidence 99999999999999999999999999988899999998875 3899999999999876 99999999999999999999
Q ss_pred HhcCC
Q 000984 607 LVEDP 611 (1198)
Q Consensus 607 l~~~~ 611 (1198)
..+++
T Consensus 237 V~~dp 241 (250)
T COG0411 237 VRNNP 241 (250)
T ss_pred HhcCH
Confidence 98763
|
|
| >cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-37 Score=323.91 Aligned_cols=182 Identities=26% Similarity=0.437 Sum_probs=160.1
Q ss_pred cEEEEeEEEEcCCCC-CCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccC--CCCCCeEEECCeecCCcCHHHHh
Q 000984 383 DIELRDVYFSYPARP-NEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFY--DPQAGEVLIDGINLKEFQLQWIR 459 (1198)
Q Consensus 383 ~i~~~~v~~~y~~~~-~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~--~~~~G~i~i~g~~~~~~~~~~~r 459 (1198)
.|+++|+++.|+... ++++|+|+||++++||+++|+||||||||||+++|+|++ +|++|+|.+||.++. ..++
T Consensus 3 ~l~~~~l~~~~~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~~----~~~~ 78 (192)
T cd03232 3 VLTWKNLNYTVPVKGGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLD----KNFQ 78 (192)
T ss_pred EEEEeeeEEEecCCCCceEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEehH----HHhh
Confidence 488999999997421 256999999999999999999999999999999999986 489999999999875 5667
Q ss_pred cceEEEcCCCCCCc-ccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhhc
Q 000984 460 KKIGLVSQEPVLFT-GSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAIL 538 (1198)
Q Consensus 460 ~~i~~v~Q~~~l~~-~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal~ 538 (1198)
++++|++|+|.+|. .|++||+.++.. + . +||||||||++||||++
T Consensus 79 ~~i~~~~q~~~~~~~~tv~~~l~~~~~----------~---------~---------------~LSgGe~qrv~la~al~ 124 (192)
T cd03232 79 RSTGYVEQQDVHSPNLTVREALRFSAL----------L---------R---------------GLSVEQRKRLTIGVELA 124 (192)
T ss_pred hceEEecccCccccCCcHHHHHHHHHH----------H---------h---------------cCCHHHhHHHHHHHHHh
Confidence 88999999998886 599999985310 0 0 89999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhC-CCeEEEEecCcch--hhccCEEEEEeC-CEEEEec
Q 000984 539 KDPRILLLDEATSALDAESEKVVQEALDRIMV-NRTTVIVAHRLST--VRNADMIAVIHR-GKIVEKG 602 (1198)
Q Consensus 539 ~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~-~~t~i~itH~~~~--~~~~d~i~~l~~-G~i~~~g 602 (1198)
++|+++||||||++||+.+.+.+.+.++++.+ ++|+|++||+++. ...||+|++|++ |++++.|
T Consensus 125 ~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiiivtH~~~~~~~~~~d~i~~l~~~g~i~~~g 192 (192)
T cd03232 125 AKPSILFLDEPTSGLDSQAAYNIVRFLKKLADSGQAILCTIHQPSASIFEKFDRLLLLKRGGKTVYFG 192 (192)
T ss_pred cCCcEEEEeCCCcCCCHHHHHHHHHHHHHHHHcCCEEEEEEcCChHHHHhhCCEEEEEcCCCeEEeCC
Confidence 99999999999999999999999999988753 7899999999984 456999999999 9998865
|
PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-36 Score=322.58 Aligned_cols=185 Identities=29% Similarity=0.499 Sum_probs=162.1
Q ss_pred EEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcc--CCCCCCeEEECCeecCCcCHHHH-hc
Q 000984 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERF--YDPQAGEVLIDGINLKEFQLQWI-RK 460 (1198)
Q Consensus 384 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~--~~~~~G~i~i~g~~~~~~~~~~~-r~ 460 (1198)
++++|++++|++ +++|+|+||++++||+++|+|+||||||||+++|+|+ ++|++|+|.+||.++.+.+.... |.
T Consensus 1 l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~~~~~~~~ 77 (200)
T cd03217 1 LEIKDLHVSVGG---KEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEERARL 77 (200)
T ss_pred CeEEEEEEEeCC---EEeeeccceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCCHHHHhhC
Confidence 468999999963 4699999999999999999999999999999999999 58999999999999988876554 55
Q ss_pred ceEEEcCCCCCCcc-cHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhhcc
Q 000984 461 KIGLVSQEPVLFTG-SIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILK 539 (1198)
Q Consensus 461 ~i~~v~Q~~~l~~~-ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal~~ 539 (1198)
+++|++|+|.++.+ |+++|+ .. ...+||||||||++||||+++
T Consensus 78 ~i~~v~q~~~~~~~~~~~~~l-------------------------~~-----------~~~~LS~G~~qrv~laral~~ 121 (200)
T cd03217 78 GIFLAFQYPPEIPGVKNADFL-------------------------RY-----------VNEGFSGGEKKRNEILQLLLL 121 (200)
T ss_pred cEEEeecChhhccCccHHHHH-------------------------hh-----------ccccCCHHHHHHHHHHHHHhc
Confidence 69999999998875 555554 00 114799999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHhHHHHHHHHHHHhC-CCeEEEEecCcchhh--ccCEEEEEeCCEEEEecChhhHh
Q 000984 540 DPRILLLDEATSALDAESEKVVQEALDRIMV-NRTTVIVAHRLSTVR--NADMIAVIHRGKIVEKGTHSKLV 608 (1198)
Q Consensus 540 ~~~illlDe~ts~lD~~~~~~i~~~i~~~~~-~~t~i~itH~~~~~~--~~d~i~~l~~G~i~~~g~~~~l~ 608 (1198)
+|+++||||||++||+.+.+.+.+.++++.+ ++|+|++||+++.+. .||++++|++|++.+.| +.|+.
T Consensus 122 ~p~illlDEPt~~LD~~~~~~l~~~L~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~~~-~~~~~ 192 (200)
T cd03217 122 EPDLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLIITHYQRLLDYIKPDRVHVLYDGRIVKSG-DKELA 192 (200)
T ss_pred CCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhhCCEEEEEECCEEEEEc-cHHHH
Confidence 9999999999999999999999999988754 689999999999987 59999999999999999 44453
|
Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. |
| >TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-37 Score=328.37 Aligned_cols=198 Identities=29% Similarity=0.504 Sum_probs=161.9
Q ss_pred EEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCH----HHHhcc
Q 000984 386 LRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQL----QWIRKK 461 (1198)
Q Consensus 386 ~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~----~~~r~~ 461 (1198)
++|+++.|+. +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++..+.. ...+++
T Consensus 1 i~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ 77 (206)
T TIGR03608 1 LKNISKKFGD---KIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGKETPPLNSKKASKFRREK 77 (206)
T ss_pred CcceEEEECC---EEEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccchhhHHHHHHhC
Confidence 4689999963 469999999999999999999999999999999999999999999999999765432 245678
Q ss_pred eEEEcCCCCCCc-ccHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhhc
Q 000984 462 IGLVSQEPVLFT-GSIKDNIAYGKDD--ATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAIL 538 (1198)
Q Consensus 462 i~~v~Q~~~l~~-~ti~~Ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal~ 538 (1198)
++|++|+|.+|. .|++||+.++... ...++..+ .+.+.++.+ |++........+||||||||++|||||+
T Consensus 78 i~~~~q~~~~~~~~t~~e~~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~lS~G~~qr~~laral~ 150 (206)
T TIGR03608 78 LGYLFQNFALIENETVEENLDLGLKYKKLSKKEKRE-----KKKEALEKV--GLNLKLKQKIYELSGGEQQRVALARAIL 150 (206)
T ss_pred eeEEecchhhccCCcHHHHHHHHHHhcCCCHHHHHH-----HHHHHHHHc--CchhhhcCChhhCCHHHHHHHHHHHHHH
Confidence 999999999986 7999999874321 11111111 112223333 4444455666789999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhC-CCeEEEEecCcchhhccCEEEEE
Q 000984 539 KDPRILLLDEATSALDAESEKVVQEALDRIMV-NRTTVIVAHRLSTVRNADMIAVI 593 (1198)
Q Consensus 539 ~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~-~~t~i~itH~~~~~~~~d~i~~l 593 (1198)
++|++|||||||++||+.+.+.+.+.++++.+ ++|+|++||+++.+..||+|++|
T Consensus 151 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~d~i~~l 206 (206)
T TIGR03608 151 KDPPLILADEPTGSLDPKNRDEVLDLLLELNDEGKTIIIVTHDPEVAKQADRVIEL 206 (206)
T ss_pred cCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhhcCEEEeC
Confidence 99999999999999999999999999988754 78999999999988789999875
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins. |
| >PRK15056 manganese/iron transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-36 Score=338.21 Aligned_cols=210 Identities=25% Similarity=0.410 Sum_probs=171.3
Q ss_pred cEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcce
Q 000984 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKI 462 (1198)
Q Consensus 383 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i 462 (1198)
.|+++|++++|++ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++.. ...+..+
T Consensus 6 ~l~~~~l~~~~~~--~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~---~~~~~~i 80 (272)
T PRK15056 6 GIVVNDVTVTWRN--GHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQ---ALQKNLV 80 (272)
T ss_pred eEEEEeEEEEecC--CcEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEhHH---hhccceE
Confidence 4899999999963 2469999999999999999999999999999999999999999999999988742 1123469
Q ss_pred EEEcCCCCC---CcccHHHHHhcCCCC-------CC---HHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHH
Q 000984 463 GLVSQEPVL---FTGSIKDNIAYGKDD-------AT---TEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQ 529 (1198)
Q Consensus 463 ~~v~Q~~~l---~~~ti~~Ni~~~~~~-------~~---~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkq 529 (1198)
+|+||+|.+ +..++++|+.++... .. .+++.++++..+ +.........+|||||||
T Consensus 81 ~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g-----------l~~~~~~~~~~LSgG~~q 149 (272)
T PRK15056 81 AYVPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVD-----------MVEFRHRQIGELSGGQKK 149 (272)
T ss_pred EEeccccccccCCCcchhhheecccccccccccCCCHHHHHHHHHHHHHcC-----------ChhHhcCCcccCCHHHHH
Confidence 999999865 456899998754210 01 122333333333 333344556689999999
Q ss_pred HHhHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh-CCCeEEEEecCcchhh-ccCEEEEEeCCEEEEecChhhH
Q 000984 530 RIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKGTHSKL 607 (1198)
Q Consensus 530 ri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l 607 (1198)
|++||||++++|++|||||||++||+.+.+.+.+.|+++. +++|+|++||+++.+. .||+++++ +|++++.|+++++
T Consensus 150 rv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~g~tviivsH~~~~~~~~~d~v~~~-~G~i~~~g~~~~~ 228 (272)
T PRK15056 150 RVFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTHNLGSVTEFCDYTVMV-KGTVLASGPTETT 228 (272)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEE-CCEEEeecCHHhc
Confidence 9999999999999999999999999999999999998875 4789999999999875 49999777 8999999999987
Q ss_pred hc
Q 000984 608 VE 609 (1198)
Q Consensus 608 ~~ 609 (1198)
..
T Consensus 229 ~~ 230 (272)
T PRK15056 229 FT 230 (272)
T ss_pred cC
Confidence 53
|
|
| >CHL00131 ycf16 sulfate ABC transporter protein; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-36 Score=334.48 Aligned_cols=218 Identities=24% Similarity=0.417 Sum_probs=175.4
Q ss_pred cEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcc--CCCCCCeEEECCeecCCcCHHHHhc
Q 000984 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERF--YDPQAGEVLIDGINLKEFQLQWIRK 460 (1198)
Q Consensus 383 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~--~~~~~G~i~i~g~~~~~~~~~~~r~ 460 (1198)
.++++|++++|+. +++|+|+||++++||+++|+|+||||||||+++|+|+ ++|++|+|.++|.++.+.+....++
T Consensus 7 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~ 83 (252)
T CHL00131 7 ILEIKNLHASVNE---NEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEPEERAH 83 (252)
T ss_pred eEEEEeEEEEeCC---EEeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCEEcccCChhhhhe
Confidence 4899999999963 4699999999999999999999999999999999998 6899999999999998887666554
Q ss_pred -ceEEEcCCCCCCcc-cHHHHHhcCCCCC------CHHHHHHHHHHhcHHHHHHhCCCCcc-chhcCCCC-CCChHHHHH
Q 000984 461 -KIGLVSQEPVLFTG-SIKDNIAYGKDDA------TTEEIRVATELANAAKFIDKLPQGID-TLVGEHGT-QLSGGQKQR 530 (1198)
Q Consensus 461 -~i~~v~Q~~~l~~~-ti~~Ni~~~~~~~------~~~~~~~~~~~~~~~~~i~~l~~g~~-t~v~~~g~-~lSgGqkqr 530 (1198)
.++|++|+|.++.+ |+++|+.++.... .+....+.. ..+.+.+..+ |+. +..+.... .||||||||
T Consensus 84 ~~~~~~~q~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~--~l~~~~~~~~~~~~LSgG~~qr 159 (252)
T CHL00131 84 LGIFLAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFL--EIINEKLKLV--GMDPSFLSRNVNEGFSGGEKKR 159 (252)
T ss_pred eeEEEEeccccccccccHHHHHHHhhhhhhcccccccccHHHHH--HHHHHHHHHc--CCchhhhccccccCCCHHHHHH
Confidence 58999999998864 8999987642100 000000000 1112223332 333 33444444 599999999
Q ss_pred HhHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh-CCCeEEEEecCcchhhc--cCEEEEEeCCEEEEecChhhH
Q 000984 531 IAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRN--ADMIAVIHRGKIVEKGTHSKL 607 (1198)
Q Consensus 531 i~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~~--~d~i~~l~~G~i~~~g~~~~l 607 (1198)
++||||++++|+++||||||++||+.+.+.+.+.|+++. +++|+|++||+++.+.. ||++++|++|++++.|+++++
T Consensus 160 v~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~~tH~~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 239 (252)
T CHL00131 160 NEILQMALLDSELAILDETDSGLDIDALKIIAEGINKLMTSENSIILITHYQRLLDYIKPDYVHVMQNGKIIKTGDAELA 239 (252)
T ss_pred HHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhhhCCEEEEEeCCEEEEecChhhh
Confidence 999999999999999999999999999999999998875 47899999999998875 899999999999999998743
|
|
| >PRK09580 sufC cysteine desulfurase ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-36 Score=333.60 Aligned_cols=218 Identities=25% Similarity=0.372 Sum_probs=168.5
Q ss_pred EEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccC--CCCCCeEEECCeecCCcCHHHHh-c
Q 000984 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFY--DPQAGEVLIDGINLKEFQLQWIR-K 460 (1198)
Q Consensus 384 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~--~~~~G~i~i~g~~~~~~~~~~~r-~ 460 (1198)
|+++|++++|+. +++|+|+||+|++||+++|+|+||||||||+++|+|++ +|++|+|.++|.++.+.+....+ .
T Consensus 2 i~~~nl~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 78 (248)
T PRK09580 2 LSIKDLHVSVED---KAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELSPEDRAGE 78 (248)
T ss_pred eEEEEEEEEeCC---eeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCCceEEEECCCccccCCHHHHhhc
Confidence 789999999963 45999999999999999999999999999999999994 69999999999999887766554 5
Q ss_pred ceEEEcCCCCCCcc-cHHHHHhcCCCCC---CHHH-HHHHHHHhcHHHHHH--hCCCCccchhcCCC-CCCChHHHHHHh
Q 000984 461 KIGLVSQEPVLFTG-SIKDNIAYGKDDA---TTEE-IRVATELANAAKFID--KLPQGIDTLVGEHG-TQLSGGQKQRIA 532 (1198)
Q Consensus 461 ~i~~v~Q~~~l~~~-ti~~Ni~~~~~~~---~~~~-~~~~~~~~~~~~~i~--~l~~g~~t~v~~~g-~~lSgGqkqri~ 532 (1198)
.++|++|+|.++.. |..+++.+..... ...+ .........+.+.++ .+|+++.+. .. ..||||||||++
T Consensus 79 ~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~---~~~~~LS~G~~qrv~ 155 (248)
T PRK09580 79 GIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKMPEDLLTR---SVNVGFSGGEKKRND 155 (248)
T ss_pred ceEEEecCchhccchhHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHcCCChhhccc---CCCCCCCHHHHHHHH
Confidence 79999999987753 5555543211100 0000 000000001112222 233333332 22 379999999999
Q ss_pred HHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhC-CCeEEEEecCcchhhc--cCEEEEEeCCEEEEecChhhH
Q 000984 533 IARAILKDPRILLLDEATSALDAESEKVVQEALDRIMV-NRTTVIVAHRLSTVRN--ADMIAVIHRGKIVEKGTHSKL 607 (1198)
Q Consensus 533 lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~-~~t~i~itH~~~~~~~--~d~i~~l~~G~i~~~g~~~~l 607 (1198)
||||++++|++|||||||++||+.+.+.+.+.++++.+ ++|+|++||+++.+.. +|+|++|++|++++.|+++..
T Consensus 156 laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~l~~~~~tiii~sH~~~~~~~~~~d~i~~l~~g~i~~~g~~~~~ 233 (248)
T PRK09580 156 ILQMAVLEPELCILDESDSGLDIDALKIVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSGDFTLV 233 (248)
T ss_pred HHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhhhCCEEEEEECCeEEEeCCHHHH
Confidence 99999999999999999999999999999999887754 6899999999999876 899999999999999988754
|
|
| >PRK03695 vitamin B12-transporter ATPase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-36 Score=331.10 Aligned_cols=210 Identities=25% Similarity=0.436 Sum_probs=174.5
Q ss_pred EEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcceEE
Q 000984 385 ELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGL 464 (1198)
Q Consensus 385 ~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~~ 464 (1198)
+++|+++. .+|+|+||++++||+++|+|+||||||||+++|+|+++ .+|+|.++|.++.+.+...+++.++|
T Consensus 2 ~~~~l~~~-------~~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~-~~G~i~~~g~~i~~~~~~~~~~~i~~ 73 (248)
T PRK03695 2 QLNDVAVS-------TRLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLP-GSGSIQFAGQPLEAWSAAELARHRAY 73 (248)
T ss_pred cccccchh-------ceecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC-CCeEEEECCEecCcCCHHHHhhheEE
Confidence 46777774 17999999999999999999999999999999999985 48999999999988888888888999
Q ss_pred EcCCCC-CCcccHHHHHhcCCCCC-CHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhhcc---
Q 000984 465 VSQEPV-LFTGSIKDNIAYGKDDA-TTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILK--- 539 (1198)
Q Consensus 465 v~Q~~~-l~~~ti~~Ni~~~~~~~-~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal~~--- 539 (1198)
++|++. ++..|+++|+.++.+.. +.++.. ..+.+.++.+ |++.........||||||||++||||+++
T Consensus 74 v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~la~al~~~~~ 146 (248)
T PRK03695 74 LSQQQTPPFAMPVFQYLTLHQPDKTRTEAVA-----SALNEVAEAL--GLDDKLGRSVNQLSGGEWQRVRLAAVVLQVWP 146 (248)
T ss_pred ecccCccCCCccHHHHHHhcCccCCCcHHHH-----HHHHHHHHHc--CCHhHhcCCcccCCHHHHHHHHHHHHHhcccc
Confidence 999985 45789999999864321 111111 1122334444 55555566778999999999999999997
Q ss_pred ----CCCEEEEeCCCCCCCHHhHHHHHHHHHHHh-CCCeEEEEecCcchhh-ccCEEEEEeCCEEEEecChhhHhc
Q 000984 540 ----DPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKGTHSKLVE 609 (1198)
Q Consensus 540 ----~~~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~ 609 (1198)
+|+++||||||++||+.+.+.+.+.++++. +++|+|++||+++.+. .||+|++|++|++++.|+++++..
T Consensus 147 ~~~p~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 222 (248)
T PRK03695 147 DINPAGQLLLLDEPMNSLDVAQQAALDRLLSELCQQGIAVVMSSHDLNHTLRHADRVWLLKQGKLLASGRRDEVLT 222 (248)
T ss_pred ccCCCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHhC
Confidence 679999999999999999999999998875 4789999999999775 599999999999999999988754
|
|
| >TIGR02770 nickel_nikD nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-36 Score=329.24 Aligned_cols=206 Identities=30% Similarity=0.452 Sum_probs=165.5
Q ss_pred cccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCC----CCCeEEECCeecCCcCHHHHhcceEEEcCCCC-CCc--
Q 000984 401 IFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDP----QAGEVLIDGINLKEFQLQWIRKKIGLVSQEPV-LFT-- 473 (1198)
Q Consensus 401 ~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~----~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~-l~~-- 473 (1198)
+|+|+||++++||+++|+||||||||||+++|+|+++| ++|+|.++|.++... +..+++++|++|+|. .|.
T Consensus 1 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~--~~~~~~i~~~~q~~~~~~~~~ 78 (230)
T TIGR02770 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPL--SIRGRHIATIMQNPRTAFNPL 78 (230)
T ss_pred CccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhh--hhhhheeEEEecCchhhcCcc
Confidence 57899999999999999999999999999999999999 899999999988654 223468999999995 343
Q ss_pred ccHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHHhCCCCcc---chhcCCCCCCChHHHHHHhHHHhhccCCCEEEEeC
Q 000984 474 GSIKDNIAYGKDD--ATTEEIRVATELANAAKFIDKLPQGID---TLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDE 548 (1198)
Q Consensus 474 ~ti~~Ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~---t~v~~~g~~lSgGqkqri~lARal~~~~~illlDe 548 (1198)
.|+.+|+.+.... ...++.. ..+.+.++.+ |++ +........||||||||++||||++++|++|||||
T Consensus 79 ~t~~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~vllLDE 151 (230)
T TIGR02770 79 FTMGNHAIETLRSLGKLSKQAR-----ALILEALEAV--GLPDPEEVLKKYPFQLSGGMLQRVMIALALLLEPPFLIADE 151 (230)
T ss_pred cCHHHHHHHHHHHcCccHHHHH-----HHHHHHHHHc--CCCchHHHHhCChhhcCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 5899998643211 1111110 0111223332 333 45667778999999999999999999999999999
Q ss_pred CCCCCCHHhHHHHHHHHHHHhC--CCeEEEEecCcchhh-ccCEEEEEeCCEEEEecChhhHhcCCCchh
Q 000984 549 ATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKGTHSKLVEDPEGAY 615 (1198)
Q Consensus 549 ~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~ 615 (1198)
||++||+.+.+.+.+.++++.+ ++|+|++||+++.+. .||+|++|++|++++.|+++++...+...|
T Consensus 152 Pt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~~~~ 221 (230)
T TIGR02770 152 PTTDLDVVNQARVLKLLRELRQLFGTGILLITHDLGVVARIADEVAVMDDGRIVERGTVKEIFYNPKHET 221 (230)
T ss_pred CccccCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhCcCCHH
Confidence 9999999999999999988753 689999999999986 499999999999999999999976543333
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous. |
| >COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-36 Score=291.39 Aligned_cols=210 Identities=28% Similarity=0.418 Sum_probs=174.0
Q ss_pred cEEEEeEEEEcCCCC-CCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHH---HH
Q 000984 383 DIELRDVYFSYPARP-NEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQ---WI 458 (1198)
Q Consensus 383 ~i~~~~v~~~y~~~~-~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~---~~ 458 (1198)
-|++++++.+-+... ...+|++++|.|++||.++||||||||||||+..+.|+-+|++|+|.+.|+++.+++.+ .+
T Consensus 6 ii~~~~l~ktvg~~~~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~ssGeV~l~G~~L~~ldEd~rA~~ 85 (228)
T COG4181 6 IIEVHHLSKTVGQGEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDARAAL 85 (228)
T ss_pred eeehhhhhhhhcCCCcceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCCCCCceEEEcCcchhhcCHHHHHHh
Confidence 377788887765432 24699999999999999999999999999999999999999999999999999988754 45
Q ss_pred h-cceEEEcCCCCCC-cccHHHHHhcCCCCCC---HHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhH
Q 000984 459 R-KKIGLVSQEPVLF-TGSIKDNIAYGKDDAT---TEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAI 533 (1198)
Q Consensus 459 r-~~i~~v~Q~~~l~-~~ti~~Ni~~~~~~~~---~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~l 533 (1198)
| +++|+|+|.-+|. +.|-.||+..+..-.. .+.... ..+.+..+ |+...+.....+||||++||+||
T Consensus 86 R~~~vGfVFQSF~Lip~ltAlENV~lPleL~ge~~~~~~~~------A~~lL~~v--GLg~Rl~HyP~qLSGGEQQRVAi 157 (228)
T COG4181 86 RARHVGFVFQSFHLIPNLTALENVALPLELRGESSADSRAG------AKALLEAV--GLGKRLTHYPAQLSGGEQQRVAL 157 (228)
T ss_pred hccceeEEEEeeeccccchhhhhccchhhhcCCccccHHHH------HHHHHHHh--CcccccccCccccCchHHHHHHH
Confidence 5 6899999999877 6899999987543211 111111 11223333 66777777778999999999999
Q ss_pred HHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh--CCCeEEEEecCcchhhccCEEEEEeCCEEEE
Q 000984 534 ARAILKDPRILLLDEATSALDAESEKVVQEALDRIM--VNRTTVIVAHRLSTVRNADMIAVIHRGKIVE 600 (1198)
Q Consensus 534 ARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~--~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~ 600 (1198)
|||+...|+||+-||||-+||.+|...|.+.+-.+- .+.|.|+|||+.....+|||++.|.+|++++
T Consensus 158 ARAfa~~P~vLfADEPTGNLD~~Tg~~iaDLlF~lnre~G~TlVlVTHD~~LA~Rc~R~~r~~~G~l~~ 226 (228)
T COG4181 158 ARAFAGRPDVLFADEPTGNLDRATGDKIADLLFALNRERGTTLVLVTHDPQLAARCDRQLRLRSGRLVE 226 (228)
T ss_pred HHHhcCCCCEEeccCCCCCcchhHHHHHHHHHHHHhhhcCceEEEEeCCHHHHHhhhheeeeecceecc
Confidence 999999999999999999999999999988875543 4689999999999999999999999999975
|
|
| >COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-36 Score=294.06 Aligned_cols=219 Identities=32% Similarity=0.556 Sum_probs=182.2
Q ss_pred cEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCC----------
Q 000984 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKE---------- 452 (1198)
Q Consensus 383 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~---------- 452 (1198)
.++++|+..+|+. ..+|+++||+.++|+.+.|+|.|||||||++++|.=+-.|+.|+|.++|..++-
T Consensus 6 ~l~v~dlHK~~G~---~eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~P~~G~I~v~geei~~k~~~~G~l~~ 82 (256)
T COG4598 6 ALEVEDLHKRYGE---HEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRDKDGQLKP 82 (256)
T ss_pred ceehhHHHhhccc---chhhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhcCCCCceEEECCeEEEeeeCCCCCeee
Confidence 5889999999964 359999999999999999999999999999999999999999999999987641
Q ss_pred ---cCHHHHhcceEEEcCCCCCCc-ccHHHHHhcCCCC-----CCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCC
Q 000984 453 ---FQLQWIRKKIGLVSQEPVLFT-GSIKDNIAYGKDD-----ATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQL 523 (1198)
Q Consensus 453 ---~~~~~~r~~i~~v~Q~~~l~~-~ti~~Ni~~~~~~-----~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~l 523 (1198)
-..+.+|.++++|+|+-.|.+ .||.||+.=+ |- ...+.++++. .++... |+..........|
T Consensus 83 ad~~q~~r~Rs~L~mVFQ~FNLWsHmtvLeNViEa-PvhVLg~~k~ea~e~Ae------~~L~kV--Gi~ek~~~YP~~L 153 (256)
T COG4598 83 ADKRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEA-PVHVLGVSKAEAIERAE------KYLAKV--GIAEKADAYPAHL 153 (256)
T ss_pred CCHHHHHHHHHHhhHhhhhcchhHHHHHHHHHHhc-chHhhcCCHHHHHHHHH------HHHHHh--CchhhhhcCcccc
Confidence 124567899999999998885 7999998732 21 1122232221 122222 5555555666789
Q ss_pred ChHHHHHHhHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh-CCCeEEEEecCcchhhc-cCEEEEEeCCEEEEe
Q 000984 524 SGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEK 601 (1198)
Q Consensus 524 SgGqkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~ 601 (1198)
||||+||++|||||..+|+++++|||||||||+-.-.+.+.++++. ++||.++|||.+.+.++ +.+|+.|.+|.|-|+
T Consensus 154 SGGQQQR~aIARaLameP~vmLFDEPTSALDPElVgEVLkv~~~LAeEgrTMv~VTHEM~FAR~Vss~v~fLh~G~iEE~ 233 (256)
T COG4598 154 SGGQQQRVAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEEGRTMVVVTHEMGFARDVSSHVIFLHQGKIEEE 233 (256)
T ss_pred CchHHHHHHHHHHHhcCCceEeecCCcccCCHHHHHHHHHHHHHHHHhCCeEEEEeeehhHHHhhhhheEEeecceeccc
Confidence 9999999999999999999999999999999998888888888765 58999999999999988 799999999999999
Q ss_pred cChhhHhcCCCc
Q 000984 602 GTHSKLVEDPEG 613 (1198)
Q Consensus 602 g~~~~l~~~~~~ 613 (1198)
|+|+++..++..
T Consensus 234 G~P~qvf~nP~S 245 (256)
T COG4598 234 GPPEQVFGNPQS 245 (256)
T ss_pred CChHHHhcCCCC
Confidence 999999987654
|
|
| >cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-36 Score=316.82 Aligned_cols=177 Identities=34% Similarity=0.592 Sum_probs=157.3
Q ss_pred EEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcceEE
Q 000984 385 ELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGL 464 (1198)
Q Consensus 385 ~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~~ 464 (1198)
+++|++++|+. +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.+...+++.++|
T Consensus 1 ~~~~l~~~~~~---~~~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~i~~ 77 (180)
T cd03214 1 EVENLSVGYGG---RTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLSPKELARKIAY 77 (180)
T ss_pred CeeEEEEEECC---eeeEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCcCCHHHHHHHHhH
Confidence 47899999963 469999999999999999999999999999999999999999999999999998888888889999
Q ss_pred EcCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhhccCCCEE
Q 000984 465 VSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRIL 544 (1198)
Q Consensus 465 v~Q~~~l~~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal~~~~~il 544 (1198)
++| +++..++.++ +...+..||||||||++||||++++|+++
T Consensus 78 ~~q---------------------------~l~~~gl~~~-----------~~~~~~~LS~G~~qrl~laral~~~p~ll 119 (180)
T cd03214 78 VPQ---------------------------ALELLGLAHL-----------ADRPFNELSGGERQRVLLARALAQEPPIL 119 (180)
T ss_pred HHH---------------------------HHHHcCCHhH-----------hcCCcccCCHHHHHHHHHHHHHhcCCCEE
Confidence 999 3444444433 33456789999999999999999999999
Q ss_pred EEeCCCCCCCHHhHHHHHHHHHHHhC--CCeEEEEecCcchhh-ccCEEEEEeCCEEEEec
Q 000984 545 LLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKG 602 (1198)
Q Consensus 545 llDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~-~~d~i~~l~~G~i~~~g 602 (1198)
||||||++||+++.+.+.+.++++.+ ++|+|++||+++.+. .||++++|++|++++.|
T Consensus 120 llDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~~~~l~~g~i~~~~ 180 (180)
T cd03214 120 LLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLAARYADRVILLKDGRIVAQG 180 (180)
T ss_pred EEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEecC
Confidence 99999999999999999999988755 689999999999985 59999999999998654
|
Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. |
| >PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-35 Score=327.53 Aligned_cols=208 Identities=25% Similarity=0.440 Sum_probs=175.0
Q ss_pred cEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcce
Q 000984 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKI 462 (1198)
Q Consensus 383 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i 462 (1198)
.++++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++| +..+
T Consensus 4 ~l~~~~l~~~~~~---~~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~~-----------~~~i 69 (251)
T PRK09544 4 LVSLENVSVSFGQ---RRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNG-----------KLRI 69 (251)
T ss_pred EEEEeceEEEECC---ceEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECC-----------ccCE
Confidence 4899999999963 4699999999999999999999999999999999999999999999987 3479
Q ss_pred EEEcCCCCCCc---ccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhhcc
Q 000984 463 GLVSQEPVLFT---GSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILK 539 (1198)
Q Consensus 463 ~~v~Q~~~l~~---~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal~~ 539 (1198)
+|++|+|.++. .|+++|+.+. +...++++..+++..++.+.+ ......||||||||++||||++.
T Consensus 70 ~~v~q~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~l~~~gl~~~~-----------~~~~~~LSgGq~qrv~laral~~ 137 (251)
T PRK09544 70 GYVPQKLYLDTTLPLTVNRFLRLR-PGTKKEDILPALKRVQAGHLI-----------DAPMQKLSGGETQRVLLARALLN 137 (251)
T ss_pred EEeccccccccccChhHHHHHhcc-ccccHHHHHHHHHHcCChHHH-----------hCChhhCCHHHHHHHHHHHHHhc
Confidence 99999998764 4899998753 223455666666666554433 34456899999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHhHHHHHHHHHHHhC--CCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChhhHhcCCCchhH
Q 000984 540 DPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVEDPEGAYS 616 (1198)
Q Consensus 540 ~~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~ 616 (1198)
+|+++||||||++||+.+...+.+.++++.+ ++|+|++||+++.+.. ||+|++|++ ++++.|+++++... ..+.
T Consensus 138 ~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tiiivsH~~~~i~~~~d~i~~l~~-~i~~~g~~~~~~~~--~~~~ 214 (251)
T PRK09544 138 RPQLLVLDEPTQGVDVNGQVALYDLIDQLRRELDCAVLMVSHDLHLVMAKTDEVLCLNH-HICCSGTPEVVSLH--PEFI 214 (251)
T ss_pred CCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEECC-ceEeeCCHHHHhCC--HHHH
Confidence 9999999999999999999999999988753 7899999999999865 999999965 79999999998653 3444
Q ss_pred HHH
Q 000984 617 QLI 619 (1198)
Q Consensus 617 ~~~ 619 (1198)
+++
T Consensus 215 ~~~ 217 (251)
T PRK09544 215 SMF 217 (251)
T ss_pred HHh
Confidence 443
|
|
| >COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-36 Score=298.38 Aligned_cols=213 Identities=25% Similarity=0.477 Sum_probs=182.1
Q ss_pred EEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcceE
Q 000984 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIG 463 (1198)
Q Consensus 384 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~ 463 (1198)
|+.+|++++-. ++.+|+++||+++|||.++|+||||+|||||+++|.|++.|.+|++.++|+++.++...++-++-+
T Consensus 2 i~a~nls~~~~---Gr~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~p~~G~v~~~g~~l~~~~~~~lA~~ra 78 (259)
T COG4559 2 IRAENLSYSLA---GRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEELARHRA 78 (259)
T ss_pred eeeeeeEEEee---cceeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccCCCCCeEeeCCcChhhCCHHHHHHHhh
Confidence 78899998864 456999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCCCCC-CcccHHHHHhcCCCCC----C--HHH--HHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHH
Q 000984 464 LVSQEPVL-FTGSIKDNIAYGKDDA----T--TEE--IRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIA 534 (1198)
Q Consensus 464 ~v~Q~~~l-~~~ti~~Ni~~~~~~~----~--~~~--~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lA 534 (1198)
+.||+..+ |.-|++|-+.+|.-.. . +++ ..+++..+.+. ..-++.-..||||||||+.||
T Consensus 79 VlpQ~s~laFpFtv~eVV~mGr~p~~~g~~~~e~~~i~~~ala~~d~~-----------~la~R~y~~LSGGEqQRVqlA 147 (259)
T COG4559 79 VLPQNSSLAFPFTVQEVVQMGRIPHRSGREPEEDERIAAQALAATDLS-----------GLAGRDYRTLSGGEQQRVQLA 147 (259)
T ss_pred hcccCcccccceEHHHHHHhcccccccCCCchhhHHHHHHHHHHcChh-----------hhhccchhhcCchHHHHHHHH
Confidence 99999876 8999999999986322 1 122 33444444332 223455568999999999999
Q ss_pred Hhhcc------CCCEEEEeCCCCCCCHHhHHHHHHHHHHHh-CCCeEEEEecCcchhh-ccCEEEEEeCCEEEEecChhh
Q 000984 535 RAILK------DPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKGTHSK 606 (1198)
Q Consensus 535 Ral~~------~~~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~-~~d~i~~l~~G~i~~~g~~~~ 606 (1198)
|.|.+ ++++|+||||||+||....+.+.+..+++. ++..|+.|-|+++... .||||++|.+||++..|+|++
T Consensus 148 RvLaQl~~~v~~~r~L~LDEPtsaLDi~HQ~~tl~laR~la~~g~~V~~VLHDLNLAA~YaDrivll~~Grv~a~g~p~~ 227 (259)
T COG4559 148 RVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLAREGGAVLAVLHDLNLAAQYADRIVLLHQGRVIASGSPQD 227 (259)
T ss_pred HHHHHccCCCCCCceEEecCCccccchHHHHHHHHHHHHHHhcCCcEEEEEccchHHHHhhheeeeeeCCeEeecCCHHH
Confidence 99986 356899999999999999998888888875 4689999999999864 699999999999999999999
Q ss_pred HhcC
Q 000984 607 LVED 610 (1198)
Q Consensus 607 l~~~ 610 (1198)
.+..
T Consensus 228 vlt~ 231 (259)
T COG4559 228 VLTD 231 (259)
T ss_pred hcCH
Confidence 8764
|
|
| >cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-35 Score=317.09 Aligned_cols=195 Identities=25% Similarity=0.374 Sum_probs=165.3
Q ss_pred EEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcceE
Q 000984 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIG 463 (1198)
Q Consensus 384 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~ 463 (1198)
++++|++++|+. +++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++.... ..+|++++
T Consensus 1 l~i~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~-~~~~~~i~ 76 (201)
T cd03231 1 LEADELTCERDG---RALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQR-DSIARGLL 76 (201)
T ss_pred CEEEEEEEEeCC---ceeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccc-HHhhhheE
Confidence 468999999963 46999999999999999999999999999999999999999999999999886543 46788999
Q ss_pred EEcCCCCCC-cccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhhccCCC
Q 000984 464 LVSQEPVLF-TGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPR 542 (1198)
Q Consensus 464 ~v~Q~~~l~-~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal~~~~~ 542 (1198)
|++|++.++ ..|++||+.+..+...++++.++++..++.+. ......+||||||||++||||++++|+
T Consensus 77 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~G~~qrl~laral~~~p~ 145 (201)
T cd03231 77 YLGHAPGIKTTLSVLENLRFWHADHSDEQVEEALARVGLNGF-----------EDRPVAQLSAGQQRRVALARLLLSGRP 145 (201)
T ss_pred EeccccccCCCcCHHHHHHhhcccccHHHHHHHHHHcCChhh-----------hcCchhhCCHHHHHHHHHHHHHhcCCC
Confidence 999999876 68999999876543445556666666555432 233456899999999999999999999
Q ss_pred EEEEeCCCCCCCHHhHHHHHHHHHHHh-CCCeEEEEecCcchhh-ccCEEEEE
Q 000984 543 ILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVR-NADMIAVI 593 (1198)
Q Consensus 543 illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~-~~d~i~~l 593 (1198)
++||||||++||+.+.+.+.+.++++. +++|+|++||+...+. .+++++++
T Consensus 146 llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~~~~~~~~ 198 (201)
T cd03231 146 LWILDEPTTALDKAGVARFAEAMAGHCARGGMVVLTTHQDLGLSEAGARELDL 198 (201)
T ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchhhhhccceeEec
Confidence 999999999999999999999998764 4789999999877654 58998876
|
The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. |
| >TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-36 Score=325.22 Aligned_cols=194 Identities=32% Similarity=0.478 Sum_probs=160.8
Q ss_pred ccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcceEEEcCCCCCCc-ccHHHHH
Q 000984 402 FSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFT-GSIKDNI 480 (1198)
Q Consensus 402 l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~~-~ti~~Ni 480 (1198)
|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.+. ..+|++|+|.+|. .|++||+
T Consensus 1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~-----~~~~v~q~~~l~~~~tv~e~l 75 (230)
T TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGP-----DRMVVFQNYSLLPWLTVRENI 75 (230)
T ss_pred CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCh-----hheEEecCcccCCCCCHHHHH
Confidence 579999999999999999999999999999999999999999999999876543 2489999999886 6999999
Q ss_pred hcCC----CCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhhccCCCEEEEeCCCCCCCHH
Q 000984 481 AYGK----DDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAE 556 (1198)
Q Consensus 481 ~~~~----~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal~~~~~illlDe~ts~lD~~ 556 (1198)
.++. +..++++..+ .+.+.++.+ |++.........||||||||++||||++++|+++||||||++||+.
T Consensus 76 ~~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~ 148 (230)
T TIGR01184 76 ALAVDRVLPDLSKSERRA-----IVEEHIALV--GLTEAADKRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDAL 148 (230)
T ss_pred HHHHHhcccCCCHHHHHH-----HHHHHHHHc--CCHHHHcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHH
Confidence 8742 1222222111 112233333 4554555667789999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHhC--CCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChhhH
Q 000984 557 SEKVVQEALDRIMV--NRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKL 607 (1198)
Q Consensus 557 ~~~~i~~~i~~~~~--~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l 607 (1198)
+.+.+.+.|.++.+ ++|+|++||+++.+.. ||+|++|++|++++.|+..++
T Consensus 149 ~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 202 (230)
T TIGR01184 149 TRGNLQEELMQIWEEHRVTVLMVTHDVDEALLLSDRVVMLTNGPAANIGQILEV 202 (230)
T ss_pred HHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeCCcEecccCceec
Confidence 99999999988653 6899999999998765 999999999999998876655
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase. |
| >cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos) | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-36 Score=306.12 Aligned_cols=159 Identities=33% Similarity=0.582 Sum_probs=147.2
Q ss_pred EEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCH-HHHhcce
Q 000984 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQL-QWIRKKI 462 (1198)
Q Consensus 384 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~-~~~r~~i 462 (1198)
|+++|++++|+. .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. +..++++
T Consensus 1 l~~~~l~~~~~~---~~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~~i 77 (163)
T cd03216 1 LELRGITKRFGG---VKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASPRDARRAGI 77 (163)
T ss_pred CEEEEEEEEECC---eEEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCcCCHHHHHhcCe
Confidence 478999999963 369999999999999999999999999999999999999999999999999988775 4467789
Q ss_pred EEEcCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhhccCCC
Q 000984 463 GLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPR 542 (1198)
Q Consensus 463 ~~v~Q~~~l~~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal~~~~~ 542 (1198)
+|++| ||||||||++||||++++|+
T Consensus 78 ~~~~q-------------------------------------------------------LS~G~~qrl~laral~~~p~ 102 (163)
T cd03216 78 AMVYQ-------------------------------------------------------LSVGERQMVEIARALARNAR 102 (163)
T ss_pred EEEEe-------------------------------------------------------cCHHHHHHHHHHHHHhcCCC
Confidence 99999 99999999999999999999
Q ss_pred EEEEeCCCCCCCHHhHHHHHHHHHHHh-CCCeEEEEecCcchhhc-cCEEEEEeCCEEEE
Q 000984 543 ILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVE 600 (1198)
Q Consensus 543 illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~ 600 (1198)
++||||||++||+++.+.+.+.++++. +++|+|++||+++.+.. ||++++|++|++++
T Consensus 103 illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~d~~~~l~~g~i~~ 162 (163)
T cd03216 103 LLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEVFEIADRVTVLRDGRVVG 162 (163)
T ss_pred EEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEe
Confidence 999999999999999999999998874 47899999999998765 99999999999875
|
The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. |
| >PRK10261 glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-35 Score=369.11 Aligned_cols=228 Identities=27% Similarity=0.450 Sum_probs=185.3
Q ss_pred cEEEEeEEEEcCCCC--------CCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcC
Q 000984 383 DIELRDVYFSYPARP--------NEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQ 454 (1198)
Q Consensus 383 ~i~~~~v~~~y~~~~--------~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~ 454 (1198)
.++++|+++.|+.+. ...+|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++...+
T Consensus 313 ~L~~~~l~~~y~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p~~G~I~~~g~~i~~~~ 392 (623)
T PRK10261 313 ILQVRNLVTRFPLRSGLLNRVTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTLS 392 (623)
T ss_pred eEEEeeeEEEEcCCCccccccCCceEEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCcEEEECCEECCcCC
Confidence 589999999996321 246899999999999999999999999999999999999999999999999998765
Q ss_pred HH---HHhcceEEEcCCCC--CC-cccHHHHHhcCCC--C-CCHHHHHHHHHHhcHHHHHHhCCCCcc-chhcCCCCCCC
Q 000984 455 LQ---WIRKKIGLVSQEPV--LF-TGSIKDNIAYGKD--D-ATTEEIRVATELANAAKFIDKLPQGID-TLVGEHGTQLS 524 (1198)
Q Consensus 455 ~~---~~r~~i~~v~Q~~~--l~-~~ti~~Ni~~~~~--~-~~~~~~~~~~~~~~~~~~i~~l~~g~~-t~v~~~g~~lS 524 (1198)
.. .+|++|+||+|+|. ++ ..||.+|+.++.. . ...++..+ .+.+.++.+ |++ .........||
T Consensus 393 ~~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~-----~~~~~L~~~--gL~~~~~~~~~~~LS 465 (623)
T PRK10261 393 PGKLQALRRDIQFIFQDPYASLDPRQTVGDSIMEPLRVHGLLPGKAAAA-----RVAWLLERV--GLLPEHAWRYPHEFS 465 (623)
T ss_pred HHHHHHhcCCeEEEecCchhhcCCCCCHHHHHHHHHHHcCCCCHHHHHH-----HHHHHHHHc--CCCHHHhhCCcccCC
Confidence 43 45778999999983 66 4699999976321 1 11211111 112233333 453 33456667899
Q ss_pred hHHHHHHhHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhC--CCeEEEEecCcchhhc-cCEEEEEeCCEEEEe
Q 000984 525 GGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEK 601 (1198)
Q Consensus 525 gGqkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~ 601 (1198)
||||||++|||||+.+|++|||||||++||+.+...+.+.|+++.+ +.|+|+|||+++.+.. ||+|++|++|+|++.
T Consensus 466 gGqrQRv~iAraL~~~p~llllDEPts~LD~~~~~~i~~ll~~l~~~~g~tvi~isHdl~~v~~~~dri~vl~~G~iv~~ 545 (623)
T PRK10261 466 GGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFGIAYLFISHDMAVVERISHRVAVMYLGQIVEI 545 (623)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEe
Confidence 9999999999999999999999999999999999999999988753 6899999999999875 999999999999999
Q ss_pred cChhhHhcCCCchhHH
Q 000984 602 GTHSKLVEDPEGAYSQ 617 (1198)
Q Consensus 602 g~~~~l~~~~~~~~~~ 617 (1198)
|+++++..++...|.+
T Consensus 546 g~~~~i~~~p~~~~~~ 561 (623)
T PRK10261 546 GPRRAVFENPQHPYTR 561 (623)
T ss_pred cCHHHHhcCCCCHHHH
Confidence 9999998765555544
|
|
| >cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-36 Score=327.83 Aligned_cols=196 Identities=26% Similarity=0.440 Sum_probs=158.8
Q ss_pred CccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcceEEEc-CCCCCC-cccH
Q 000984 399 EQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVS-QEPVLF-TGSI 476 (1198)
Q Consensus 399 ~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~~v~-Q~~~l~-~~ti 476 (1198)
+++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++... ...++++++|++ |++.++ ..|+
T Consensus 34 ~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~-~~~~~~~i~~~~~~~~~~~~~~tv 112 (236)
T cd03267 34 VEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWKR-RKKFLRRIGVVFGQKTQLWWDLPV 112 (236)
T ss_pred eeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccc-chhhcccEEEEcCCccccCCCCcH
Confidence 4699999999999999999999999999999999999999999999999886543 345678899997 666676 5799
Q ss_pred HHHHhcCCC--CCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhhccCCCEEEEeCCCCCCC
Q 000984 477 KDNIAYGKD--DATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALD 554 (1198)
Q Consensus 477 ~~Ni~~~~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal~~~~~illlDe~ts~lD 554 (1198)
+||+.+... ..+.++..+.+ .+.++.+ |++.........||||||||++||||++.+|+++||||||++||
T Consensus 113 ~e~l~~~~~~~~~~~~~~~~~~-----~~~l~~~--gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD 185 (236)
T cd03267 113 IDSFYLLAAIYDLPPARFKKRL-----DELSELL--DLEELLDTPVRQLSLGQRMRAEIAAALLHEPEILFLDEPTIGLD 185 (236)
T ss_pred HHHHHHHHHHcCCCHHHHHHHH-----HHHHHHc--CChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCC
Confidence 999976421 12222222211 1122222 34333444556899999999999999999999999999999999
Q ss_pred HHhHHHHHHHHHHHhC--CCeEEEEecCcchhhc-cCEEEEEeCCEEEEec
Q 000984 555 AESEKVVQEALDRIMV--NRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKG 602 (1198)
Q Consensus 555 ~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g 602 (1198)
+.+.+.+.+.|+++.+ ++|+|++||+++.+.. ||+|++|++|++++.|
T Consensus 186 ~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g 236 (236)
T cd03267 186 VVAQENIRNFLKEYNRERGTTVLLTSHYMKDIEALARRVLVIDKGRLLYDG 236 (236)
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHHhCCEEEEEeCCEEEecC
Confidence 9999999999988753 6899999999998865 9999999999998765
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein. |
| >COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-35 Score=320.17 Aligned_cols=227 Identities=30% Similarity=0.474 Sum_probs=187.1
Q ss_pred cccEEEEeEEEEcCCCCC--------CccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCC
Q 000984 381 RGDIELRDVYFSYPARPN--------EQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKE 452 (1198)
Q Consensus 381 ~g~i~~~~v~~~y~~~~~--------~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~ 452 (1198)
..-++.+|+...||-+.+ ..+.+++||++++||.+||||.||||||||-.+|+|++++. |+|.++|.++..
T Consensus 274 ~~ll~~~~v~v~f~i~~g~~~r~~~~~~AVd~isl~L~~gqTlGlVGESGSGKsTlG~allrL~~s~-G~I~F~G~~i~~ 352 (534)
T COG4172 274 PVLLEVEDLRVWFPIKGGFLRRTVDHLRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPSQ-GEIRFDGQDIDG 352 (534)
T ss_pred CceEEecceEEEEecCCccccccchheEEeccceeEecCCCeEEEEecCCCCcchHHHHHHhhcCcC-ceEEECCccccc
Confidence 345889999999975422 24789999999999999999999999999999999999776 999999999998
Q ss_pred cCHHH---HhcceEEEcCCCC-CC--cccHHHHHhcC----CCCCC----HHHHHHHHHHhcHHHHHHhCCCCccchhcC
Q 000984 453 FQLQW---IRKKIGLVSQEPV-LF--TGSIKDNIAYG----KDDAT----TEEIRVATELANAAKFIDKLPQGIDTLVGE 518 (1198)
Q Consensus 453 ~~~~~---~r~~i~~v~Q~~~-l~--~~ti~~Ni~~~----~~~~~----~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~ 518 (1198)
.+.+. +|+++-+|+|||+ -+ ..||.+-|.=| .|..+ ++++.++++.++++.. -..+
T Consensus 353 ~~~~~mrplR~~mQvVFQDPygSLsPRmtV~qII~EGL~vh~~~ls~~eR~~rv~~aL~EVGLDp~----------~r~R 422 (534)
T COG4172 353 LSRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEPKLSAAERDQRVIEALEEVGLDPA----------TRNR 422 (534)
T ss_pred cChhhhhhhhhhceEEEeCCCCCCCcccCHHHHhhhhhhhcCCCCCHHHHHHHHHHHHHHcCCChh----------Hhhc
Confidence 87655 5789999999996 22 35776666533 23333 3445555555544332 2356
Q ss_pred CCCCCChHHHHHHhHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhC--CCeEEEEecCcchhhc-cCEEEEEeC
Q 000984 519 HGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRN-ADMIAVIHR 595 (1198)
Q Consensus 519 ~g~~lSgGqkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~~-~d~i~~l~~ 595 (1198)
....+|||||||||||||+.-+|++++|||||||||.-...+|.+.++++-+ +-+-++|+|++..++. ||+|+||++
T Consensus 423 YPhEFSGGQRQRIAIARAliLkP~~i~LDEPTSALD~SVQaQvv~LLr~LQ~k~~LsYLFISHDL~VvrAl~~~viVm~~ 502 (534)
T COG4172 423 YPHEFSGGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRDLQQKHGLSYLFISHDLAVVRALCHRVIVMRD 502 (534)
T ss_pred CCcccCcchhhHHHHHHHHhcCCcEEEecCCchHhhHHHHHHHHHHHHHHHHHhCCeEEEEeccHHHHHHhhceEEEEeC
Confidence 6788999999999999999999999999999999999999999999887643 5688999999999986 999999999
Q ss_pred CEEEEecChhhHhcCCCchhHHH
Q 000984 596 GKIVEKGTHSKLVEDPEGAYSQL 618 (1198)
Q Consensus 596 G~i~~~g~~~~l~~~~~~~~~~~ 618 (1198)
|+|+|+|+.+++.+++...|.+-
T Consensus 503 GkiVE~G~~~~if~~P~~~YT~~ 525 (534)
T COG4172 503 GKIVEQGPTEAVFANPQHEYTRA 525 (534)
T ss_pred CEEeeeCCHHHHhcCCCcHHHHH
Confidence 99999999999999888777654
|
|
| >PRK13540 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-35 Score=316.19 Aligned_cols=194 Identities=22% Similarity=0.369 Sum_probs=161.5
Q ss_pred EEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcceE
Q 000984 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIG 463 (1198)
Q Consensus 384 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~ 463 (1198)
++++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.+||.++.. ....+|++++
T Consensus 2 l~~~~l~~~~~~---~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~-~~~~~~~~i~ 77 (200)
T PRK13540 2 LDVIELDFDYHD---QPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKK-DLCTYQKQLC 77 (200)
T ss_pred EEEEEEEEEeCC---eeEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeeEEECCCcccc-CHHHHHhheE
Confidence 689999999963 469999999999999999999999999999999999999999999999998865 3456788999
Q ss_pred EEcCCCCCC-cccHHHHHhcCCCC-CCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhhccCC
Q 000984 464 LVSQEPVLF-TGSIKDNIAYGKDD-ATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDP 541 (1198)
Q Consensus 464 ~v~Q~~~l~-~~ti~~Ni~~~~~~-~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal~~~~ 541 (1198)
|++|++.++ ..|+++|+.++... ..+.++. +.++.+ |+.........+||||||||++||||++++|
T Consensus 78 ~~~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~---------~~l~~~--~l~~~~~~~~~~LS~G~~~rv~laral~~~p 146 (200)
T PRK13540 78 FVGHRSGINPYLTLRENCLYDIHFSPGAVGIT---------ELCRLF--SLEHLIDYPCGLLSSGQKRQVALLRLWMSKA 146 (200)
T ss_pred EeccccccCcCCCHHHHHHHHHhcCcchHHHH---------HHHHHc--CCchhhhCChhhcCHHHHHHHHHHHHHhcCC
Confidence 999999886 57999999975311 1122222 333333 2222334445679999999999999999999
Q ss_pred CEEEEeCCCCCCCHHhHHHHHHHHHHHh-CCCeEEEEecCcchhhccCEEEE
Q 000984 542 RILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRNADMIAV 592 (1198)
Q Consensus 542 ~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~~~d~i~~ 592 (1198)
++|||||||++||+.+...+.+.|+++. +++|+|++||+.+.+..||.-++
T Consensus 147 ~~lilDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~d~~~~ 198 (200)
T PRK13540 147 KLWLLDEPLVALDELSLLTIITKIQEHRAKGGAVLLTSHQDLPLNKADYEEY 198 (200)
T ss_pred CEEEEeCCCcccCHHHHHHHHHHHHHHHHcCCEEEEEeCCchhccccchhhc
Confidence 9999999999999999999999998864 47899999999999999997543
|
|
| >COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-35 Score=291.56 Aligned_cols=210 Identities=29% Similarity=0.481 Sum_probs=169.1
Q ss_pred EEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcceE
Q 000984 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIG 463 (1198)
Q Consensus 384 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~ 463 (1198)
+..++++.+|+..+ .++|+|+|++|.+||+++++||||||||||++++.|+++|..|+|.+||..|..-+. .=|
T Consensus 4 l~~~~~sl~y~g~~-~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P~~G~i~l~~r~i~gPga-----erg 77 (259)
T COG4525 4 LNVSHLSLSYEGKP-RSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGRRIEGPGA-----ERG 77 (259)
T ss_pred eehhheEEecCCcc-hhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcCcccceEEECCEeccCCCc-----cce
Confidence 56788999998654 569999999999999999999999999999999999999999999999988765443 358
Q ss_pred EEcCCCCCCc-ccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhhccCCC
Q 000984 464 LVSQEPVLFT-GSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPR 542 (1198)
Q Consensus 464 ~v~Q~~~l~~-~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal~~~~~ 542 (1198)
+|+|++-|+. -|+.||+.||..-.. +.++.+....++.+... |++-.=......||||||||+.|||||..+|+
T Consensus 78 vVFQ~~~LlPWl~~~dNvafgL~l~G---i~k~~R~~~a~q~l~~V--gL~~~~~~~i~qLSGGmrQRvGiARALa~eP~ 152 (259)
T COG4525 78 VVFQNEALLPWLNVIDNVAFGLQLRG---IEKAQRREIAHQMLALV--GLEGAEHKYIWQLSGGMRQRVGIARALAVEPQ 152 (259)
T ss_pred eEeccCccchhhHHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHh--CcccccccceEeecchHHHHHHHHHHhhcCcc
Confidence 9999998886 699999999854221 11111111122222222 33322244567899999999999999999999
Q ss_pred EEEEeCCCCCCCHHhHHHHHHHHHHHh--CCCeEEEEecCcchhh-ccCEEEEEe--CCEEEEecCh
Q 000984 543 ILLLDEATSALDAESEKVVQEALDRIM--VNRTTVIVAHRLSTVR-NADMIAVIH--RGKIVEKGTH 604 (1198)
Q Consensus 543 illlDe~ts~lD~~~~~~i~~~i~~~~--~~~t~i~itH~~~~~~-~~d~i~~l~--~G~i~~~g~~ 604 (1198)
.|+||||++|||+-|.+.+|+.+.++. .++.+++|||+++..- -+++++||. .|+|++.=++
T Consensus 153 ~LlLDEPfgAlDa~tRe~mQelLldlw~~tgk~~lliTH~ieEAlflatrLvvlsp~pgRvv~~~~~ 219 (259)
T COG4525 153 LLLLDEPFGALDALTREQMQELLLDLWQETGKQVLLITHDIEEALFLATRLVVLSPGPGRVVERLPL 219 (259)
T ss_pred eEeecCchhhHHHHHHHHHHHHHHHHHHHhCCeEEEEeccHHHHHhhhheeEEecCCCceeeEecCC
Confidence 999999999999999999999998765 4789999999999765 499999997 5799876543
|
|
| >PRK13538 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-35 Score=316.03 Aligned_cols=195 Identities=22% Similarity=0.333 Sum_probs=164.1
Q ss_pred EEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcceE
Q 000984 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIG 463 (1198)
Q Consensus 384 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~ 463 (1198)
|+++|++++|+. +++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.++.... ...+++++
T Consensus 2 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~v~~~g~~~~~~~-~~~~~~~~ 77 (204)
T PRK13538 2 LEARNLACERDE---RILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQR-DEYHQDLL 77 (204)
T ss_pred eEEEEEEEEECC---EEEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccch-HHhhhheE
Confidence 689999999963 46999999999999999999999999999999999999999999999999987654 45677899
Q ss_pred EEcCCCCCCc-ccHHHHHhcCCCC---CCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhhcc
Q 000984 464 LVSQEPVLFT-GSIKDNIAYGKDD---ATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILK 539 (1198)
Q Consensus 464 ~v~Q~~~l~~-~ti~~Ni~~~~~~---~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal~~ 539 (1198)
|++|++.++. .|++||+.++.+. ..++++.++++..++.+ ........||||||||++||||+++
T Consensus 78 ~~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~l~~~gl~~-----------~~~~~~~~LS~G~~qrl~la~al~~ 146 (204)
T PRK13538 78 YLGHQPGIKTELTALENLRFYQRLHGPGDDEALWEALAQVGLAG-----------FEDVPVRQLSAGQQRRVALARLWLT 146 (204)
T ss_pred EeCCccccCcCCcHHHHHHHHHHhcCccHHHHHHHHHHHcCCHH-----------HhhCChhhcCHHHHHHHHHHHHHhc
Confidence 9999998875 6999999875422 22344444555544432 3344567899999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHhHHHHHHHHHHHh-CCCeEEEEecCcchhhc-cCEEEEE
Q 000984 540 DPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRN-ADMIAVI 593 (1198)
Q Consensus 540 ~~~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~~-~d~i~~l 593 (1198)
+|+++||||||++||+.+.+.+.+.|+++. +++|+|++||+++.+.. .+|++++
T Consensus 147 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~i~~~~~~~~~~ 202 (204)
T PRK13538 147 RAPLWILDEPFTAIDKQGVARLEALLAQHAEQGGMVILTTHQDLPVASDKVRKLRL 202 (204)
T ss_pred CCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecChhhhccCCceEEec
Confidence 999999999999999999999999998864 46899999999999965 5677776
|
|
| >KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-33 Score=312.23 Aligned_cols=417 Identities=16% Similarity=0.226 Sum_probs=258.8
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000984 165 GRMSGDTVLIQDAMGEKVGKFLQLMATFLGG-FLIAFIKGWLLTLVMLSSIPLLAMSGGVMAIMISKMSSRGQGAYAKAA 243 (1198)
Q Consensus 165 ~r~s~D~~~i~~~~~~~~~~~~~~~~~~i~~-~i~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (1198)
.|++.|+++.-..+.+.....+...+.++-. +.+.-..+|+-...++..+.+-.++...+.+.+.+...+.++...+..
T Consensus 186 QrltqDv~kf~~~l~sl~s~l~~a~~di~~Y~~~l~~s~g~~gp~~i~~Yf~~~~vi~~~L~~pI~~l~~~qeklEGdfR 265 (659)
T KOG0060|consen 186 QRLTQDVEKFCRQLSSLYSNLLKAPFDLVYYTFRLFESAGWLGPVSIFAYFLIGTVINKTLRGPIVKLTVEQEKLEGDFR 265 (659)
T ss_pred HHHhHHHHHHHHHHHHHHHhhhccceeeehhhhHHhhhcCcccHHHHHHHHHHHHHHHhhhccchhHHHHHHHHhhcchh
Confidence 5888999988777664444443333332222 222223344332223222222233334444444555555555555555
Q ss_pred HHHHHHHhhHHHHHHhCcHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH-HHHHHHHHHHH--HHHHHHHHHhCC
Q 000984 244 SVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYKSG---VQEGLAAGIGLGMV-MLIVFCSYALS--VWYGGKLILEEG 317 (1198)
Q Consensus 244 ~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~-~~~~~~~~~~~--~~~g~~l~~~~~ 317 (1198)
-.-++...|...|..|+.++.+........+...... +...++.++....+ .+..++.++++ -++.++ .-..
T Consensus 266 y~h~rlr~NaE~iAFY~g~~~E~~~~~~~f~~Lv~~l~~l~~~r~~l~f~~n~~~Ylg~ilsy~vi~~p~Fs~h--~y~~ 343 (659)
T KOG0060|consen 266 YKHSRLRVNAEEIAFYRGGQVEHQRTDQRFRNLVQHLRELMSFRFWLGFIDNIFDYLGGILSYVVIAIPFFSGH--VYDD 343 (659)
T ss_pred hheeeeeecchhhhhhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhheeeEEeeeeeccc--ccCC
Confidence 5555667788889999888766655444333322222 11222222221111 11111111110 001111 1123
Q ss_pred CCHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc---cCC----------CCCccC-------CC
Q 000984 318 YNGGQVVNVM----VAVLTGSMSLGEASPCLSAFGAGQAAAFKMFETIN---RKP----------EIDAYD-------TK 373 (1198)
Q Consensus 318 ~~~~~~~~~~----~~~l~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~---~~~----------~~~~~~-------~~ 373 (1198)
+++..+...+ +.++.....++.+.-....+.+-..-..|+-++.+ ... ++..+. ..
T Consensus 344 ~s~aEL~~~i~~na~~~i~Li~~f~~l~~~~~~ls~lsGyt~Ri~el~~~l~d~~~~~~~~~~~~~~~~E~~~~l~~~~G 423 (659)
T KOG0060|consen 344 LSPAELSGLISNNAFVFIYLISAFGRLVDLSRDLSRLSGYTHRIGELMEVLDDLSSGSQECTMEEEELGEAEWGLSLPPG 423 (659)
T ss_pred cCHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHHhccCCcchhhhhhhhhhhhhccCCCCC
Confidence 4444443322 11111122222222222222222223344443322 110 000000 00
Q ss_pred CcccCCCcccEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCc
Q 000984 374 GKILDDIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEF 453 (1198)
Q Consensus 374 ~~~~~~~~g~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~ 453 (1198)
.....+.+..|++++|++.-|++ +..+.+|+||+|+.|+.+.|+||||||||+|+++|.|+.+..+|++.-....-
T Consensus 424 ~~~~~~~Dn~i~~e~v~l~tPt~-g~~lie~Ls~~V~~g~~LLItG~sG~GKtSLlRvlggLWp~~~G~l~k~~~~~--- 499 (659)
T KOG0060|consen 424 SGKAEPADNAIEFEEVSLSTPTN-GDLLIENLSLEVPSGQNLLITGPSGCGKTSLLRVLGGLWPSTGGKLTKPTDGG--- 499 (659)
T ss_pred CcccccccceEEeeeeeecCCCC-CceeeeeeeeEecCCCeEEEECCCCCchhHHHHHHhcccccCCCeEEecccCC---
Confidence 01112334679999999998875 45677889999999999999999999999999999999999999997644210
Q ss_pred CHHHHhcceEEEcCCCCCCcccHHHHHhcCC-------CCCCHHHHHHHHHHhcHHHHHHhCCCCccchhc-CCCCCCCh
Q 000984 454 QLQWIRKKIGLVSQEPVLFTGSIKDNIAYGK-------DDATTEEIRVATELANAAKFIDKLPQGIDTLVG-EHGTQLSG 525 (1198)
Q Consensus 454 ~~~~~r~~i~~v~Q~~~l~~~ti~~Ni~~~~-------~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~-~~g~~lSg 525 (1198)
-+.+-|+||.|.+-.||+||-+.++. ...+++++.+.++.+++.+.++.. +|+|+++. +-...||+
T Consensus 500 -----~~~lfflPQrPYmt~GTLRdQvIYP~~~~~~~~~~~~d~~i~r~Le~v~L~hl~~r~-ggld~~~~~dW~dvLS~ 573 (659)
T KOG0060|consen 500 -----PKDLFFLPQRPYMTLGTLRDQVIYPLKAEDMDSKSASDEDILRILENVQLGHLLERE-GGLDQQVDWDWMDVLSP 573 (659)
T ss_pred -----CCceEEecCCCCccccchhheeeccCccccccccCCCHHHHHHHHHHhhhhhHHHHh-CCCCchhhccHHhhcCH
Confidence 03599999999999999999999872 235789999999999998866654 68887664 45678999
Q ss_pred HHHHHHhHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhCCCeEEEEecCcchhhccCEEEEEeC
Q 000984 526 GQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHR 595 (1198)
Q Consensus 526 Gqkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~~d~i~~l~~ 595 (1198)
||+||+|.||-+|++|++-+|||+|||||.+.|..+.+.+++. +-|.|.|.||.+..+.-|.++.|+.
T Consensus 574 GEqQRLa~ARLfy~kPk~AiLDE~TSAv~~dvE~~~Yr~~r~~--giT~iSVgHRkSL~kfHd~~L~~~g 641 (659)
T KOG0060|consen 574 GEQQRLAFARLFYHKPKFAILDECTSAVTEDVEGALYRKCREM--GITFISVGHRKSLWKFHDYVLRMDG 641 (659)
T ss_pred HHHHHHHHHHHHhcCCceEEeechhhhccHHHHHHHHHHHHHc--CCeEEEeccHHHHHhhhhEEEEecC
Confidence 9999999999999999999999999999999999999888875 7899999999999999999999986
|
|
| >PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-35 Score=359.17 Aligned_cols=221 Identities=28% Similarity=0.486 Sum_probs=180.7
Q ss_pred cEEEEeEEEEcCCC--------CCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcC
Q 000984 383 DIELRDVYFSYPAR--------PNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQ 454 (1198)
Q Consensus 383 ~i~~~~v~~~y~~~--------~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~ 454 (1198)
.|+++|+++.|+.. .+.++|+|+||+|++||+++|+||||||||||+++|+|++ |.+|+|.++|.++...+
T Consensus 275 ~l~~~~l~~~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~-~~~G~i~~~g~~i~~~~ 353 (529)
T PRK15134 275 LLDVEQLQVAFPIRKGILKRTVDHNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLI-NSQGEIWFDGQPLHNLN 353 (529)
T ss_pred cccccCcEEEeecCccccccccccceeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcC-CCCcEEEECCEEccccc
Confidence 48999999999631 1246999999999999999999999999999999999998 58999999999987765
Q ss_pred HHH---HhcceEEEcCCC--CCCc-ccHHHHHhcCCCC----CCHHHHHHHHHHhcHHHHHHhCCCCcc-chhcCCCCCC
Q 000984 455 LQW---IRKKIGLVSQEP--VLFT-GSIKDNIAYGKDD----ATTEEIRVATELANAAKFIDKLPQGID-TLVGEHGTQL 523 (1198)
Q Consensus 455 ~~~---~r~~i~~v~Q~~--~l~~-~ti~~Ni~~~~~~----~~~~~~~~~~~~~~~~~~i~~l~~g~~-t~v~~~g~~l 523 (1198)
... +|++++|++|+| .++. .|++||+.++... .+..+.. ..+.+.++.+ |+. ........+|
T Consensus 354 ~~~~~~~~~~i~~v~q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~~L 426 (529)
T PRK15134 354 RRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQPTLSAAQRE-----QQVIAVMEEV--GLDPETRHRYPAEF 426 (529)
T ss_pred hhhHHHhhhceEEEEeCchhhcCCcccHHHHHHHHHHhccccCChHHHH-----HHHHHHHHHc--CCCHHHHhcCCccC
Confidence 443 467899999998 3664 6999999874210 1111111 1122334444 554 2356667889
Q ss_pred ChHHHHHHhHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhC--CCeEEEEecCcchhhc-cCEEEEEeCCEEEE
Q 000984 524 SGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRN-ADMIAVIHRGKIVE 600 (1198)
Q Consensus 524 SgGqkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~ 600 (1198)
|||||||++||||++.+|++|||||||++||+.+.+.+.+.|+++.+ ++|+|+|||+++.+.. ||+|++|++|++++
T Consensus 427 SgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~ 506 (529)
T PRK15134 427 SGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHQLAYLFISHDLHVVRALCHQVIVLRQGEVVE 506 (529)
T ss_pred CHHHHHHHHHHHHHhCCCCEEEeeCCccccCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhcCeEEEEECCEEEE
Confidence 99999999999999999999999999999999999999999988753 6899999999998865 99999999999999
Q ss_pred ecChhhHhcCC
Q 000984 601 KGTHSKLVEDP 611 (1198)
Q Consensus 601 ~g~~~~l~~~~ 611 (1198)
.|+++++.+.+
T Consensus 507 ~~~~~~~~~~~ 517 (529)
T PRK15134 507 QGDCERVFAAP 517 (529)
T ss_pred EcCHHHHhcCC
Confidence 99999987653
|
|
| >COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-35 Score=310.00 Aligned_cols=197 Identities=32% Similarity=0.518 Sum_probs=168.1
Q ss_pred cEEEEeEEEEcCCCCC------CccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHH
Q 000984 383 DIELRDVYFSYPARPN------EQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQ 456 (1198)
Q Consensus 383 ~i~~~~v~~~y~~~~~------~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~ 456 (1198)
-++++|++..|+.... ..+++||||+|++||.++|||.|||||||+.++|+|+++|++|+|.++|.|+..++
T Consensus 4 ll~v~~l~k~f~~~~~~~~~~~v~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g~~i~~~~-- 81 (268)
T COG4608 4 LLEVKNLKKYFPVGKGFGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDITKLS-- 81 (268)
T ss_pred eEEEeccEEEEecccccCcccceEEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcCcchhhcc--
Confidence 3788999999975421 36899999999999999999999999999999999999999999999998876555
Q ss_pred HHhcceEEEcCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHh
Q 000984 457 WIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARA 536 (1198)
Q Consensus 457 ~~r~~i~~v~Q~~~l~~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARa 536 (1198)
.....+++.+.++.+++.++ ........||||||||++||||
T Consensus 82 ----------------------------~~~~~~~v~elL~~Vgl~~~----------~~~ryPhelSGGQrQRi~IARA 123 (268)
T COG4608 82 ----------------------------KEERRERVLELLEKVGLPEE----------FLYRYPHELSGGQRQRIGIARA 123 (268)
T ss_pred ----------------------------hhHHHHHHHHHHHHhCCCHH----------HhhcCCcccCchhhhhHHHHHH
Confidence 11123456666666554332 2355567899999999999999
Q ss_pred hccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh--CCCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChhhHhcCCCc
Q 000984 537 ILKDPRILLLDEATSALDAESEKVVQEALDRIM--VNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVEDPEG 613 (1198)
Q Consensus 537 l~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~--~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~~~ 613 (1198)
|.-+|+++++|||+|+||.-...++.+.+.++. .+-|.++|||+++.++. ||||.||..|+|+|.|+.+++..++..
T Consensus 124 Lal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~vv~~isdri~VMy~G~iVE~g~~~~~~~~p~H 203 (268)
T COG4608 124 LALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLSVVRYISDRIAVMYLGKIVEIGPTEEVFSNPLH 203 (268)
T ss_pred HhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHHhhhhhcccEEEEecCceeEecCHHHHhhCCCC
Confidence 999999999999999999999999999887764 36899999999999987 999999999999999999999998888
Q ss_pred hhHHHH
Q 000984 614 AYSQLI 619 (1198)
Q Consensus 614 ~~~~~~ 619 (1198)
.|.+..
T Consensus 204 pYTk~L 209 (268)
T COG4608 204 PYTKAL 209 (268)
T ss_pred HHHHHH
Confidence 887654
|
|
| >PRK13543 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-35 Score=313.37 Aligned_cols=196 Identities=20% Similarity=0.297 Sum_probs=162.5
Q ss_pred cEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcce
Q 000984 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKI 462 (1198)
Q Consensus 383 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i 462 (1198)
.++++|++++|++ +++++++||++++||+++|+|+||||||||+++|.|+++|++|+|.++|.++... ..++.+
T Consensus 11 ~l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~i~~~---~~~~~i 84 (214)
T PRK13543 11 LLAAHALAFSRNE---EPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRG---DRSRFM 84 (214)
T ss_pred eEEEeeEEEecCC---ceeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCeeEEECCEEccch---hhhhce
Confidence 4899999999963 3599999999999999999999999999999999999999999999999988652 345679
Q ss_pred EEEcCCCCCCcc-cHHHHHhcCCCC--CC-HHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhhc
Q 000984 463 GLVSQEPVLFTG-SIKDNIAYGKDD--AT-TEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAIL 538 (1198)
Q Consensus 463 ~~v~Q~~~l~~~-ti~~Ni~~~~~~--~~-~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal~ 538 (1198)
+|++|+|.++.+ |++||+.++... .. ++...+.++.. |+..........||||||||++||||++
T Consensus 85 ~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~l~~~-----------~l~~~~~~~~~~LS~G~~qrv~laral~ 153 (214)
T PRK13543 85 AYLGHLPGLKADLSTLENLHFLCGLHGRRAKQMPGSALAIV-----------GLAGYEDTLVRQLSAGQKKRLALARLWL 153 (214)
T ss_pred EEeecCcccccCCcHHHHHHHHHHhcCCcHHHHHHHHHHHc-----------CChhhccCChhhCCHHHHHHHHHHHHHh
Confidence 999999988875 999999764221 11 12222222222 3333344556789999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh-CCCeEEEEecCcchhhc-cCEEEEEeC
Q 000984 539 KDPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRN-ADMIAVIHR 595 (1198)
Q Consensus 539 ~~~~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~ 595 (1198)
++|+++||||||++||+++.+.+.+.+++.. +++|+|++||+++.+.. ||++++++.
T Consensus 154 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~~~i~~l~~ 212 (214)
T PRK13543 154 SPAPLWLLDEPYANLDLEGITLVNRMISAHLRGGGAALVTTHGAYAAPPVRTRMLTLEA 212 (214)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecChhhhhhhcceEEEEee
Confidence 9999999999999999999999999998764 46899999999998865 899999864
|
|
| >TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-35 Score=311.55 Aligned_cols=193 Identities=23% Similarity=0.324 Sum_probs=159.3
Q ss_pred EEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcceE
Q 000984 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIG 463 (1198)
Q Consensus 384 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~ 463 (1198)
++++|+++.|+. +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.... ...+++++
T Consensus 1 l~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~-~~~~~~i~ 76 (198)
T TIGR01189 1 LAARNLACSRGE---RMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQR-DEPHRNIL 76 (198)
T ss_pred CEEEEEEEEECC---EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccch-HHhhhheE
Confidence 478999999963 46999999999999999999999999999999999999999999999999987765 45678899
Q ss_pred EEcCCCCCCc-ccHHHHHhcCCCCCC--HHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhhccC
Q 000984 464 LVSQEPVLFT-GSIKDNIAYGKDDAT--TEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKD 540 (1198)
Q Consensus 464 ~v~Q~~~l~~-~ti~~Ni~~~~~~~~--~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal~~~ 540 (1198)
|++|++.++. .|+++|+.+...... ++++.++++..++.+. ......+||||||||++||||++++
T Consensus 77 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~G~~qrv~la~al~~~ 145 (198)
T TIGR01189 77 YLGHLPGLKPELSALENLHFWAAIHGGAQRTIEDALAAVGLTGF-----------EDLPAAQLSAGQQRRLALARLWLSR 145 (198)
T ss_pred EeccCcccccCCcHHHHHHHHHHHcCCcHHHHHHHHHHcCCHHH-----------hcCChhhcCHHHHHHHHHHHHHhcC
Confidence 9999998885 799999986432111 2334555555544433 3344568999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHhHHHHHHHHHHHh-CCCeEEEEecCcchhhccCEEEE
Q 000984 541 PRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRNADMIAV 592 (1198)
Q Consensus 541 ~~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~~~d~i~~ 592 (1198)
|+++||||||++||+.+.+.+.+.+.++. +++|+|++||+...+. +++++.
T Consensus 146 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~~-~~~~~~ 197 (198)
T TIGR01189 146 APLWILDEPTTALDKAGVALLAGLLRAHLARGGIVLLTTHQDLGLV-EARELR 197 (198)
T ss_pred CCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEEccccccc-ceEEee
Confidence 99999999999999999999999998863 5789999999985443 365543
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c. |
| >COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-35 Score=292.08 Aligned_cols=221 Identities=26% Similarity=0.463 Sum_probs=184.5
Q ss_pred EEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcceE
Q 000984 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIG 463 (1198)
Q Consensus 384 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~ 463 (1198)
|+++||+.+|.+ +.+++++|++|++|.+++|+||+|+|||||+..+.|++++++|+|.+||.++.+.+.++|.++++
T Consensus 2 I~i~nv~K~y~~---~~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~~d~G~i~i~g~~~~~~~s~~LAk~lS 78 (252)
T COG4604 2 ITIENVSKSYGT---KVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEITIDGLELTSTPSKELAKKLS 78 (252)
T ss_pred eeehhhhHhhCC---EEeeccceeeecCCceeEEECCCCccHHHHHHHHHHhccccCceEEEeeeecccCChHHHHHHHH
Confidence 789999999963 56999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCCCCCC-cccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhhccCCC
Q 000984 464 LVSQEPVLF-TGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPR 542 (1198)
Q Consensus 464 ~v~Q~~~l~-~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal~~~~~ 542 (1198)
+.-|+.++- .-||||=+.||+-.++..+...-++ ..+.+.++-| .+...-++.-..||||||||.-+|..++++.+
T Consensus 79 ILkQ~N~i~~rlTV~dLv~FGRfPYSqGRlt~eD~-~~I~~aieyl--~L~~l~dryLd~LSGGQrQRAfIAMVlaQdTd 155 (252)
T COG4604 79 ILKQENHINSRLTVRDLVGFGRFPYSQGRLTKEDR-RIINEAIEYL--HLEDLSDRYLDELSGGQRQRAFIAMVLAQDTD 155 (252)
T ss_pred HHHhhchhhheeEHHHHhhcCCCcccCCCCchHHH-HHHHHHHHHh--cccchHHHhHHhcccchhhhhhhheeeeccCc
Confidence 999999876 5799999999974444221111100 0111112222 23333344445799999999999999999999
Q ss_pred EEEEeCCCCCCCHHhHHHHHHHHHHHhC--CCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChhhHhcC
Q 000984 543 ILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVED 610 (1198)
Q Consensus 543 illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 610 (1198)
-++||||+.+||......+.+.++++.. +||+++|-|+.++... +|+|+-|++|+++.+|+|+|+++.
T Consensus 156 yvlLDEPLNNLDmkHsv~iMk~Lrrla~el~KtiviVlHDINfAS~YsD~IVAlK~G~vv~~G~~~eii~~ 226 (252)
T COG4604 156 YVLLDEPLNNLDMKHSVQIMKILRRLADELGKTIVVVLHDINFASCYSDHIVALKNGKVVKQGSPDEIIQP 226 (252)
T ss_pred EEEecCcccccchHHHHHHHHHHHHHHHHhCCeEEEEEecccHHHhhhhheeeecCCEEEecCCHHHhcCH
Confidence 9999999999999988888777776543 7999999999999875 899999999999999999999874
|
|
| >PRK13539 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-34 Score=311.41 Aligned_cols=195 Identities=24% Similarity=0.351 Sum_probs=162.9
Q ss_pred cEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcce
Q 000984 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKI 462 (1198)
Q Consensus 383 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i 462 (1198)
.|+++|+++.|+. ..+|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++.. .. .|+++
T Consensus 2 ~l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~--~~-~~~~~ 75 (207)
T PRK13539 2 MLEGEDLACVRGG---RVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDD--PD-VAEAC 75 (207)
T ss_pred EEEEEeEEEEECC---eEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeCcc--hh-hHhhc
Confidence 3789999999963 359999999999999999999999999999999999999999999999998752 22 78899
Q ss_pred EEEcCCCCCC-cccHHHHHhcCCC--CCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhhcc
Q 000984 463 GLVSQEPVLF-TGSIKDNIAYGKD--DATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILK 539 (1198)
Q Consensus 463 ~~v~Q~~~l~-~~ti~~Ni~~~~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal~~ 539 (1198)
+|++|++.++ ..|+++|+.+... ...++++.++++..++.+ ........||||||||++||||+++
T Consensus 76 ~~~~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LS~G~~qrl~la~al~~ 144 (207)
T PRK13539 76 HYLGHRNAMKPALTVAENLEFWAAFLGGEELDIAAALEAVGLAP-----------LAHLPFGYLSAGQKRRVALARLLVS 144 (207)
T ss_pred EEecCCCcCCCCCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHH-----------HHcCChhhcCHHHHHHHHHHHHHhc
Confidence 9999988765 6899999976422 122344555555555433 2233345799999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHhHHHHHHHHHHHh-CCCeEEEEecCcchhhccCEEEEEeC
Q 000984 540 DPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRNADMIAVIHR 595 (1198)
Q Consensus 540 ~~~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~~~d~i~~l~~ 595 (1198)
+|+++||||||++||+.+.+.+.+.|+++. +++|+|++||+++.+.. |+++.++.
T Consensus 145 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~-~~~~~~~~ 200 (207)
T PRK13539 145 NRPIWILDEPTAALDAAAVALFAELIRAHLAQGGIVIAATHIPLGLPG-ARELDLGP 200 (207)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCchhhcc-CcEEeecC
Confidence 999999999999999999999999998753 57899999999999988 99988854
|
|
| >TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-35 Score=365.36 Aligned_cols=203 Identities=24% Similarity=0.385 Sum_probs=171.8
Q ss_pred CCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCC---CCeEEECCeecCCcCHHHHhcceEEEcCCCCCCc-
Q 000984 398 NEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQ---AGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFT- 473 (1198)
Q Consensus 398 ~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~---~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~~- 473 (1198)
++++|+|+|+++++||.++|+||+|||||||+++|.|..+|. +|+|.+||.++. ...+|+.++||+|+++++.
T Consensus 37 ~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~---~~~~~~~i~yv~Q~~~~~~~ 113 (617)
T TIGR00955 37 RKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPID---AKEMRAISAYVQQDDLFIPT 113 (617)
T ss_pred ccccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECC---HHHHhhhceeeccccccCcc
Confidence 467999999999999999999999999999999999998874 799999999875 3567889999999999995
Q ss_pred ccHHHHHhcCCCC-----CCHHHHHHHHHHhcHHHHHHh--CCCCccchhcCC--CCCCChHHHHHHhHHHhhccCCCEE
Q 000984 474 GSIKDNIAYGKDD-----ATTEEIRVATELANAAKFIDK--LPQGIDTLVGEH--GTQLSGGQKQRIAIARAILKDPRIL 544 (1198)
Q Consensus 474 ~ti~~Ni~~~~~~-----~~~~~~~~~~~~~~~~~~i~~--l~~g~~t~v~~~--g~~lSgGqkqri~lARal~~~~~il 544 (1198)
.||+|||.|+... .+.++. ...+++.++. +++..||.+|+. +..||||||||++|||||+.+|+++
T Consensus 114 lTV~e~l~f~~~~~~~~~~~~~~~-----~~~v~~~l~~lgL~~~~~t~vg~~~~~~~LSgGqrkRvsia~aL~~~p~vl 188 (617)
T TIGR00955 114 LTVREHLMFQAHLRMPRRVTKKEK-----RERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAFASELLTDPPLL 188 (617)
T ss_pred CcHHHHHHHHHhcCCCCCCCHHHH-----HHHHHHHHHHcCchhcCcCccCCCCCCCCcCcchhhHHHHHHHHHcCCCEE
Confidence 6999999875321 122211 1122333443 345678999984 4789999999999999999999999
Q ss_pred EEeCCCCCCCHHhHHHHHHHHHHHh-CCCeEEEEecCcc-h-hhccCEEEEEeCCEEEEecChhhHh
Q 000984 545 LLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLS-T-VRNADMIAVIHRGKIVEKGTHSKLV 608 (1198)
Q Consensus 545 llDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~-~-~~~~d~i~~l~~G~i~~~g~~~~l~ 608 (1198)
+||||||+||+.+...+.+.++++. +++|+|+++|+++ . ...+|++++|++|+++++|+++++.
T Consensus 189 llDEPtsgLD~~~~~~l~~~L~~l~~~g~tvi~~~hq~~~~i~~~~D~i~ll~~G~~v~~G~~~~~~ 255 (617)
T TIGR00955 189 FCDEPTSGLDSFMAYSVVQVLKGLAQKGKTIICTIHQPSSELFELFDKIILMAEGRVAYLGSPDQAV 255 (617)
T ss_pred EeeCCCcchhHHHHHHHHHHHHHHHhCCCEEEEEeCCCCHHHHHHhceEEEeeCCeEEEECCHHHHH
Confidence 9999999999999999999998875 4799999999996 3 5679999999999999999999885
|
|
| >PRK13546 teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-34 Score=320.18 Aligned_cols=208 Identities=24% Similarity=0.344 Sum_probs=169.2
Q ss_pred cEEEEeEEEEcCCC-----------------CCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEE
Q 000984 383 DIELRDVYFSYPAR-----------------PNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLI 445 (1198)
Q Consensus 383 ~i~~~~v~~~y~~~-----------------~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i 445 (1198)
.|+++|++.+|... ...++|+|+||+|++||+++|+||||||||||+++|+|+++|.+|+|.+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~p~~G~I~~ 83 (264)
T PRK13546 4 SVNIKNVTKEYRIYRTNKERMKDALIPKHKNKTFFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVDR 83 (264)
T ss_pred eEEEeeeEEEEEecccchHHHHHHhhhhccCCceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEE
Confidence 46777777766431 1246899999999999999999999999999999999999999999999
Q ss_pred CCeecCCcCHHHHhcceEEEcCCCCCCc-ccHHHHHhcCC--CCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCC
Q 000984 446 DGINLKEFQLQWIRKKIGLVSQEPVLFT-GSIKDNIAYGK--DDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQ 522 (1198)
Q Consensus 446 ~g~~~~~~~~~~~r~~i~~v~Q~~~l~~-~ti~~Ni~~~~--~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~ 522 (1198)
+| .+++++|++.++. .|+++|+.++. ...+.++...... +.+..+ |++..+......
T Consensus 84 ~g-------------~~~~~~~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~-----~~l~~~--~l~~~~~~~~~~ 143 (264)
T PRK13546 84 NG-------------EVSVIAISAGLSGQLTGIENIEFKMLCMGFKRKEIKAMTP-----KIIEFS--ELGEFIYQPVKK 143 (264)
T ss_pred CC-------------EEeEEecccCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHH-----HHHHHc--CCchhhcCCccc
Confidence 98 3678889887764 69999997632 1223333322211 111111 444555667789
Q ss_pred CChHHHHHHhHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh-CCCeEEEEecCcchhhc-cCEEEEEeCCEEEE
Q 000984 523 LSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVE 600 (1198)
Q Consensus 523 lSgGqkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~ 600 (1198)
||||||||++||||++++|++|||||||++||+.+.+.+.+.+.++. .++|+|++||+++.+.. ||+|++|++|++++
T Consensus 144 LS~Gq~qrv~Laral~~~p~iLlLDEPt~gLD~~~~~~l~~~L~~~~~~g~tiIiisH~~~~i~~~~d~i~~l~~G~i~~ 223 (264)
T PRK13546 144 YSSGMRAKLGFSINITVNPDILVIDEALSVGDQTFAQKCLDKIYEFKEQNKTIFFVSHNLGQVRQFCTKIAWIEGGKLKD 223 (264)
T ss_pred CCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHcCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999988888764 47899999999998865 99999999999999
Q ss_pred ecChhhHhcC
Q 000984 601 KGTHSKLVED 610 (1198)
Q Consensus 601 ~g~~~~l~~~ 610 (1198)
.|+++++.+.
T Consensus 224 ~g~~~~~~~~ 233 (264)
T PRK13546 224 YGELDDVLPK 233 (264)
T ss_pred eCCHHHHHHH
Confidence 9999998875
|
|
| >COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-35 Score=276.67 Aligned_cols=219 Identities=28% Similarity=0.469 Sum_probs=177.2
Q ss_pred cEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCe--ecCCc----CHH
Q 000984 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGI--NLKEF----QLQ 456 (1198)
Q Consensus 383 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~--~~~~~----~~~ 456 (1198)
.|+++|++|.|+. ..+|.||+|+.+.||.+.+.||||+|||||++.|.=+--|.+|+..|.|. |.++. ...
T Consensus 2 sirv~~in~~yg~---~q~lfdi~l~~~~getlvllgpsgagkssllr~lnlle~p~sg~l~ia~~~fd~s~~~~~k~i~ 78 (242)
T COG4161 2 SIQLNGINCFYGA---HQALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIR 78 (242)
T ss_pred ceEEccccccccc---chheeeeeecCCCCCEEEEECCCCCchHHHHHHHHHHhCCCCCeEEecccccccccCccHHHHH
Confidence 4889999999974 35999999999999999999999999999999999888899999999774 34333 346
Q ss_pred HHhcceEEEcCCCCCCc-ccHHHHHhcCCCC----CCHH----HHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHH
Q 000984 457 WIRKKIGLVSQEPVLFT-GSIKDNIAYGKDD----ATTE----EIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQ 527 (1198)
Q Consensus 457 ~~r~~i~~v~Q~~~l~~-~ti~~Ni~~~~~~----~~~~----~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGq 527 (1198)
++|+.+|+|+|.-+|.. .||-||+.= .|- .+++ +..+.++..++.++-+ +-...|||||
T Consensus 79 ~lr~~vgmvfqqy~lwphltv~enlie-ap~kv~gl~~~qa~~~a~ellkrlrl~~~ad-----------r~plhlsggq 146 (242)
T COG4161 79 DLRRNVGMVFQQYNLWPHLTVQENLIE-APCRVLGLSKDQALARAEKLLKRLRLKPYAD-----------RYPLHLSGGQ 146 (242)
T ss_pred HHHHhhhhhhhhhccCchhHHHHHHHh-hhHHHhCCCHHHHHHHHHHHHHHhccccccc-----------cCceecccch
Confidence 78999999999999884 799999973 221 1122 2223333333333333 3346799999
Q ss_pred HHHHhHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhC-CCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChh
Q 000984 528 KQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMV-NRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHS 605 (1198)
Q Consensus 528 kqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~-~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~ 605 (1198)
+||+||||||..+|++|++||||++|||+-...+.+.|+++.. +-|-++|||..+..+. |.+|+.|++|+|+|.|+++
T Consensus 147 qqrvaiaralmmkpqvllfdeptaaldpeitaqvv~iikel~~tgitqvivthev~va~k~as~vvyme~g~ive~g~a~ 226 (242)
T COG4161 147 QQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIKELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDAS 226 (242)
T ss_pred hhhHHHHHHHhcCCcEEeecCcccccCHHHHHHHHHHHHHHHhcCceEEEEEeehhHHHhhhhheEeeecCeeEeecchh
Confidence 9999999999999999999999999999988888899998764 6799999999999876 9999999999999999988
Q ss_pred hHhcCCCchhH
Q 000984 606 KLVEDPEGAYS 616 (1198)
Q Consensus 606 ~l~~~~~~~~~ 616 (1198)
..-+.....|.
T Consensus 227 ~ft~p~te~f~ 237 (242)
T COG4161 227 CFTEPQTEAFK 237 (242)
T ss_pred hccCccHHHHH
Confidence 76544333333
|
|
| >PLN03211 ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-34 Score=357.80 Aligned_cols=202 Identities=28% Similarity=0.450 Sum_probs=168.2
Q ss_pred CccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCC--CCeEEECCeecCCcCHHHHhcceEEEcCCCCCCc-cc
Q 000984 399 EQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQ--AGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFT-GS 475 (1198)
Q Consensus 399 ~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~--~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~~-~t 475 (1198)
+.+|+|+|+++++||+++|+||||||||||+++|+|..+|. +|+|.+||.++.. ..+++++||+|++.++. .|
T Consensus 81 ~~iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLaG~~~~~~~sG~I~inG~~~~~----~~~~~i~yv~Q~~~l~~~lT 156 (659)
T PLN03211 81 RTILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPTK----QILKRTGFVTQDDILYPHLT 156 (659)
T ss_pred CeeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCceeEEEEECCEECch----hhccceEEECcccccCCcCC
Confidence 56999999999999999999999999999999999999885 8999999998742 34567999999999985 69
Q ss_pred HHHHHhcCC----C-CCCHHHHHHHHHHhcHHHHHHh--CCCCccchhcCC-CCCCChHHHHHHhHHHhhccCCCEEEEe
Q 000984 476 IKDNIAYGK----D-DATTEEIRVATELANAAKFIDK--LPQGIDTLVGEH-GTQLSGGQKQRIAIARAILKDPRILLLD 547 (1198)
Q Consensus 476 i~~Ni~~~~----~-~~~~~~~~~~~~~~~~~~~i~~--l~~g~~t~v~~~-g~~lSgGqkqri~lARal~~~~~illlD 547 (1198)
|+||+.+.. + ..++++..+. +++.++. +++..+|.+|+. ...||||||||++|||||+++|+||+||
T Consensus 157 V~E~l~~~a~~~~~~~~~~~~~~~~-----v~~~l~~lgL~~~~~t~vg~~~~~~LSgGerqRv~ia~aL~~~P~iLlLD 231 (659)
T PLN03211 157 VRETLVFCSLLRLPKSLTKQEKILV-----AESVISELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILD 231 (659)
T ss_pred HHHHHHHHHHhCCCCCCCHHHHHHH-----HHHHHHHcCChhhcCceeCCCCCCCcChhhhhHHHHHHHHHhCCCEEEEe
Confidence 999998742 1 1233322211 1223333 333447888754 6789999999999999999999999999
Q ss_pred CCCCCCCHHhHHHHHHHHHHHh-CCCeEEEEecCcch-h-hccCEEEEEeCCEEEEecChhhHhc
Q 000984 548 EATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLST-V-RNADMIAVIHRGKIVEKGTHSKLVE 609 (1198)
Q Consensus 548 e~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~-~-~~~d~i~~l~~G~i~~~g~~~~l~~ 609 (1198)
|||++||+.+...+.+.++++. +++|+|+++|+++. + ..+|+|++|++|++++.|+++++.+
T Consensus 232 EPtsgLD~~~~~~l~~~L~~l~~~g~TvI~~sH~~~~~i~~~~D~iilL~~G~iv~~G~~~~~~~ 296 (659)
T PLN03211 232 EPTSGLDATAAYRLVLTLGSLAQKGKTIVTSMHQPSSRVYQMFDSVLVLSEGRCLFFGKGSDAMA 296 (659)
T ss_pred CCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhceEEEecCCcEEEECCHHHHHH
Confidence 9999999999999999998875 57999999999984 4 5699999999999999999999853
|
|
| >PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-34 Score=333.01 Aligned_cols=208 Identities=25% Similarity=0.352 Sum_probs=167.7
Q ss_pred cEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcce
Q 000984 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKI 462 (1198)
Q Consensus 383 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i 462 (1198)
.++++|++|+|+....+++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.+.
T Consensus 21 mL~lknL~~~~~~~~~~~IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~P~sGeI~I~G~~~------------ 88 (549)
T PRK13545 21 FDKLKDLFFRSKDGEYHYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKGSAA------------ 88 (549)
T ss_pred eeEEEEEEEecCCCccceEEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCCCCceEEEECCEee------------
Confidence 58999999999764445799999999999999999999999999999999999999999999999641
Q ss_pred EEEcCCCCCC-cccHHHHHhcCC--CCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhhcc
Q 000984 463 GLVSQEPVLF-TGSIKDNIAYGK--DDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILK 539 (1198)
Q Consensus 463 ~~v~Q~~~l~-~~ti~~Ni~~~~--~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal~~ 539 (1198)
++.+.+.++ ..|++||+.++. ...+.++..+.+ .+.++.+ |++.........||||||||++|||||+.
T Consensus 89 -~i~~~~~l~~~lTV~EnL~l~~~~~~~~~~e~~e~i-----~elLe~l--gL~~~ld~~~~~LSGGQrQRVaLArAL~~ 160 (549)
T PRK13545 89 -LIAISSGLNGQLTGIENIELKGLMMGLTKEKIKEII-----PEIIEFA--DIGKFIYQPVKTYSSGMKSRLGFAISVHI 160 (549)
T ss_pred -eEEeccccCCCCcHHHHHHhhhhhcCCCHHHHHHHH-----HHHHHHc--CChhHhhCCcccCCHHHHHHHHHHHHHHh
Confidence 223344444 359999998632 122333322211 1112222 34444555677899999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHhHHHHHHHHHHHh-CCCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChhhHhcC
Q 000984 540 DPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVED 610 (1198)
Q Consensus 540 ~~~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 610 (1198)
+|++|||||||++||+.+.+.+.+.|+++. +++|+|++||+++.+.. ||++++|++|++++.|+++++...
T Consensus 161 ~P~LLLLDEPTsgLD~~sr~~LlelL~el~~~G~TIIIVSHdl~~i~~l~DrIivL~~GkIv~~G~~~el~~~ 233 (549)
T PRK13545 161 NPDILVIDEALSVGDQTFTKKCLDKMNEFKEQGKTIFFISHSLSQVKSFCTKALWLHYGQVKEYGDIKEVVDH 233 (549)
T ss_pred CCCEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEECCHHHHHhh
Confidence 999999999999999999999999998764 46899999999998865 999999999999999999998764
|
|
| >TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-34 Score=314.62 Aligned_cols=203 Identities=29% Similarity=0.395 Sum_probs=160.4
Q ss_pred EEEEeEEEEcCCC---C-CCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEEC--Ce--ecCCcCH
Q 000984 384 IELRDVYFSYPAR---P-NEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLID--GI--NLKEFQL 455 (1198)
Q Consensus 384 i~~~~v~~~y~~~---~-~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~--g~--~~~~~~~ 455 (1198)
|+++|++++|+.. . ..++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++ |. ++...+.
T Consensus 2 l~~~~l~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~~~g~~~~~~~~~~ 81 (224)
T TIGR02324 2 LEVEDLSKTFTLHQQGGVRLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQASP 81 (224)
T ss_pred EEEEeeEEEeecccCCCcceEEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEEecCCCccchhhcCH
Confidence 7899999999631 1 2469999999999999999999999999999999999999999999998 42 6655554
Q ss_pred HH---H-hcceEEEcCCCCCCc-ccHHHHHhcCCC--CCCHHHHHHHHHHhcHHHHHHhCCCCccch-hcCCCCCCChHH
Q 000984 456 QW---I-RKKIGLVSQEPVLFT-GSIKDNIAYGKD--DATTEEIRVATELANAAKFIDKLPQGIDTL-VGEHGTQLSGGQ 527 (1198)
Q Consensus 456 ~~---~-r~~i~~v~Q~~~l~~-~ti~~Ni~~~~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~-v~~~g~~lSgGq 527 (1198)
.. + +++++|++|+|.++. .|++||+.++.. ....++..+ .+.+.++.+ |+... ....+.+|||||
T Consensus 82 ~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~~LS~G~ 154 (224)
T TIGR02324 82 REVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLERGVPREAARA-----RARELLARL--NIPERLWHLPPATFSGGE 154 (224)
T ss_pred HHHHHHHhcceEEEecccccCCCccHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHHc--CCchhhhhCCcccCCHHH
Confidence 43 3 457999999998875 599999975321 112221111 112233333 33322 244577899999
Q ss_pred HHHHhHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh-CCCeEEEEecCcchhh-ccCEEEEE
Q 000984 528 KQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVR-NADMIAVI 593 (1198)
Q Consensus 528 kqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~-~~d~i~~l 593 (1198)
|||++||||++++|+++||||||++||+++.+.+.+.++++. +++|+|++||+++.+. .||+|+.+
T Consensus 155 ~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vsH~~~~~~~~~d~i~~~ 222 (224)
T TIGR02324 155 QQRVNIARGFIADYPILLLDEPTASLDAANRQVVVELIAEAKARGAALIGIFHDEEVRELVADRVMDV 222 (224)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcceeEec
Confidence 999999999999999999999999999999999999998875 4789999999999886 59999876
|
Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. |
| >COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-35 Score=301.05 Aligned_cols=197 Identities=29% Similarity=0.487 Sum_probs=170.0
Q ss_pred ceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecC----CcCHHHHhcceEEEcCCCCCC-cccHHH
Q 000984 404 GFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLK----EFQLQWIRKKIGLVSQEPVLF-TGSIKD 478 (1198)
Q Consensus 404 ~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~----~~~~~~~r~~i~~v~Q~~~l~-~~ti~~ 478 (1198)
+++|+.+.-..+||-|+||||||||+++|.|+..|++|.|.+||.-+. .+.+.--+++||||+||..|| .-|||.
T Consensus 16 ~a~~~~p~~GvTAlFG~SGsGKTslin~IaGL~rPdeG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARLFpH~tVrg 95 (352)
T COG4148 16 DANFTLPARGITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPHYTVRG 95 (352)
T ss_pred EEeccCCCCceEEEecCCCCChhhHHHHHhccCCccccEEEECCEEeecccCCcccChhhheeeeEeeccccccceEEec
Confidence 577888776899999999999999999999999999999999997764 344455578999999999999 589999
Q ss_pred HHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhhccCCCEEEEeCCCCCCCHHhH
Q 000984 479 NIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESE 558 (1198)
Q Consensus 479 Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal~~~~~illlDe~ts~lD~~~~ 558 (1198)
|+.||....+.++...++.+-++...+ .+....||||+|||+||+|||+.+|++|+||||+|+||....
T Consensus 96 NL~YG~~~~~~~~fd~iv~lLGI~hLL-----------~R~P~~LSGGEkQRVAIGRALLt~P~LLLmDEPLaSLD~~RK 164 (352)
T COG4148 96 NLRYGMWKSMRAQFDQLVALLGIEHLL-----------DRYPGTLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRK 164 (352)
T ss_pred chhhhhcccchHhHHHHHHHhCcHHHH-----------hhCCCccCcchhhHHHHHHHHhcCCCeeeecCchhhcccchh
Confidence 999998766666777776666555544 455578999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhC--CCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChhhHhcCC
Q 000984 559 KVVQEALDRIMV--NRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVEDP 611 (1198)
Q Consensus 559 ~~i~~~i~~~~~--~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~ 611 (1198)
+.+.-.++++.+ +--++.|||.++.+.+ ||+|++|++|++...|..++..+.+
T Consensus 165 ~EilpylERL~~e~~IPIlYVSHS~~Ev~RLAd~vV~le~GkV~A~g~~e~v~~~~ 220 (352)
T COG4148 165 REILPYLERLRDEINIPILYVSHSLDEVLRLADRVVVLENGKVKASGPLEEVWGSP 220 (352)
T ss_pred hHHHHHHHHHHHhcCCCEEEEecCHHHHHhhhheEEEecCCeEEecCcHHHHhcCc
Confidence 988888877764 4678999999998755 9999999999999999999998763
|
|
| >TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-34 Score=353.45 Aligned_cols=220 Identities=28% Similarity=0.470 Sum_probs=176.4
Q ss_pred cEEEEeEEEEcCC--CCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEEC-Cee---cCCcC--
Q 000984 383 DIELRDVYFSYPA--RPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLID-GIN---LKEFQ-- 454 (1198)
Q Consensus 383 ~i~~~~v~~~y~~--~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~-g~~---~~~~~-- 454 (1198)
.++++|++++|+. +...++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++ |.+ +...+
T Consensus 279 ~l~~~~l~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~~g~~~~~~~~~~~~ 358 (520)
T TIGR03269 279 IIKVRNVSKRYISVDRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPGPD 358 (520)
T ss_pred eEEEeccEEEeccCCCCCceEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEecCCccccccccchh
Confidence 5999999999963 122469999999999999999999999999999999999999999999996 643 33332
Q ss_pred -HHHHhcceEEEcCCCCCCc-ccHHHHHhcCCC-CCCHHHHHHHHHHhcHHHHHHhCCCCccc-----hhcCCCCCCChH
Q 000984 455 -LQWIRKKIGLVSQEPVLFT-GSIKDNIAYGKD-DATTEEIRVATELANAAKFIDKLPQGIDT-----LVGEHGTQLSGG 526 (1198)
Q Consensus 455 -~~~~r~~i~~v~Q~~~l~~-~ti~~Ni~~~~~-~~~~~~~~~~~~~~~~~~~i~~l~~g~~t-----~v~~~g~~lSgG 526 (1198)
...+|++++|++|++.+|. .|++||+.++.. ....++.. ..+.+.++.+ |+.. ........||||
T Consensus 359 ~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~~~~~~LSgG 431 (520)
T TIGR03269 359 GRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGLELPDELAR-----MKAVITLKMV--GFDEEKAEEILDKYPDELSEG 431 (520)
T ss_pred hHHHHhhhEEEEccCcccCCCCcHHHHHHHHHHcCCCHHHHH-----HHHHHHHHhC--CCCCccchhhhhCChhhCCHH
Confidence 2345678999999998876 599999986321 11111111 1112333333 3432 345667789999
Q ss_pred HHHHHhHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhC--CCeEEEEecCcchhhc-cCEEEEEeCCEEEEecC
Q 000984 527 QKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGT 603 (1198)
Q Consensus 527 qkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~ 603 (1198)
||||++|||||+.+|++|||||||++||+.+.+.+.+.|+++.+ ++|+|+|||+++.+.. ||+|++|++|++++.|+
T Consensus 432 q~qrv~laral~~~p~lLllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~g~ 511 (520)
T TIGR03269 432 ERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHDMDFVLDVCDRAALMRDGKIVKIGD 511 (520)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEECC
Confidence 99999999999999999999999999999999999999988753 6899999999999865 99999999999999999
Q ss_pred hhhHhc
Q 000984 604 HSKLVE 609 (1198)
Q Consensus 604 ~~~l~~ 609 (1198)
++++.+
T Consensus 512 ~~~~~~ 517 (520)
T TIGR03269 512 PEEIVE 517 (520)
T ss_pred HHHHHh
Confidence 988754
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. |
| >PRK13549 xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-34 Score=352.30 Aligned_cols=218 Identities=23% Similarity=0.374 Sum_probs=177.9
Q ss_pred cEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCC-CCCCeEEECCeecCCcCH-HHHhc
Q 000984 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYD-PQAGEVLIDGINLKEFQL-QWIRK 460 (1198)
Q Consensus 383 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~-~~~G~i~i~g~~~~~~~~-~~~r~ 460 (1198)
.|+++|+++.|+...+.++|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++...+. +..+.
T Consensus 259 ~l~~~~l~~~~~~~~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~~~G~i~~~g~~~~~~~~~~~~~~ 338 (506)
T PRK13549 259 ILEVRNLTAWDPVNPHIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRWEGEIFIDGKPVKIRNPQQAIAQ 338 (506)
T ss_pred eEEEecCccccccccccccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCcEEEECCEECCCCCHHHHHHC
Confidence 5899999999953223469999999999999999999999999999999999998 599999999999865443 44577
Q ss_pred ceEEEcCCC---CCC-cccHHHHHhcCCC-CC------CHHHHHHHHHHhcHHHHHHhCCCCccc-hhcCCCCCCChHHH
Q 000984 461 KIGLVSQEP---VLF-TGSIKDNIAYGKD-DA------TTEEIRVATELANAAKFIDKLPQGIDT-LVGEHGTQLSGGQK 528 (1198)
Q Consensus 461 ~i~~v~Q~~---~l~-~~ti~~Ni~~~~~-~~------~~~~~~~~~~~~~~~~~i~~l~~g~~t-~v~~~g~~lSgGqk 528 (1198)
+++|++|+| .++ ..|+.||+.++.. .. +.++. ...+.+.++.+ |++. ........||||||
T Consensus 339 ~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~~~--~l~~~~~~~~~~~LSgG~k 411 (506)
T PRK13549 339 GIAMVPEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAAE-----LKTILESIQRL--KVKTASPELAIARLSGGNQ 411 (506)
T ss_pred CCEEeCcchhhCCCcCCCCHHHHhhhhhhhhhccCcccChHHH-----HHHHHHHHHhc--CccCCCcccccccCCHHHH
Confidence 899999996 355 4699999987531 00 11111 11233445555 4532 34566778999999
Q ss_pred HHHhHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh-CCCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChhh
Q 000984 529 QRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSK 606 (1198)
Q Consensus 529 qri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~ 606 (1198)
||++||||++.+|++|||||||++||+.+.+.+.+.++++. +++|+|++||+++.+.. ||++++|++|+++..|++++
T Consensus 412 qrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~~sHd~~~~~~~~d~v~~l~~G~i~~~~~~~~ 491 (506)
T PRK13549 412 QKAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLVQQGVAIIVISSELPEVLGLSDRVLVMHEGKLKGDLINHN 491 (506)
T ss_pred HHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEecccc
Confidence 99999999999999999999999999999999999998764 47899999999998865 99999999999999998876
Q ss_pred H
Q 000984 607 L 607 (1198)
Q Consensus 607 l 607 (1198)
+
T Consensus 492 ~ 492 (506)
T PRK13549 492 L 492 (506)
T ss_pred C
Confidence 5
|
|
| >PRK10535 macrolide transporter ATP-binding /permease protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-34 Score=357.37 Aligned_cols=219 Identities=30% Similarity=0.483 Sum_probs=187.2
Q ss_pred cEEEEeEEEEcCCCC-CCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHH---
Q 000984 383 DIELRDVYFSYPARP-NEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWI--- 458 (1198)
Q Consensus 383 ~i~~~~v~~~y~~~~-~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~--- 458 (1198)
.++++|++++|+... .+++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.+||.++...+.+++
T Consensus 4 ~l~~~nl~~~y~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~ 83 (648)
T PRK10535 4 LLELKDIRRSYPSGEEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVATLDADALAQL 83 (648)
T ss_pred EEEEeeEEEEeCCCCCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEcCcCCHHHHHHH
Confidence 489999999996422 2469999999999999999999999999999999999999999999999999998876654
Q ss_pred -hcceEEEcCCCCCCc-ccHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHH
Q 000984 459 -RKKIGLVSQEPVLFT-GSIKDNIAYGKDD--ATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIA 534 (1198)
Q Consensus 459 -r~~i~~v~Q~~~l~~-~ti~~Ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lA 534 (1198)
|+.++|++|+|.+|. .|+.||+.++... ...++. .....+.++.+ |++..+.....+||||||||++||
T Consensus 84 ~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~-----~~~~~~~l~~l--gl~~~~~~~~~~LS~Gq~qrv~LA 156 (648)
T PRK10535 84 RREHFGFIFQRYHLLSHLTAAQNVEVPAVYAGLERKQR-----LLRAQELLQRL--GLEDRVEYQPSQLSGGQQQRVSIA 156 (648)
T ss_pred HhccEEEEeCCcccCCCCCHHHHHHHHHHHcCCCHHHH-----HHHHHHHHHHC--CChhhhcCCcccCCHHHHHHHHHH
Confidence 578999999999996 5999999864211 111111 11223445555 677777777889999999999999
Q ss_pred HhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh-CCCeEEEEecCcchhhccCEEEEEeCCEEEEecChhhHh
Q 000984 535 RAILKDPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLV 608 (1198)
Q Consensus 535 Ral~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~ 608 (1198)
||++++|+++||||||++||+.+.+.+.+.++++. +++|+|++||+++.+..||++++|++|++++.|+.++..
T Consensus 157 raL~~~P~lLllDEP~~gLD~~s~~~l~~ll~~l~~~g~tilivsH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 231 (648)
T PRK10535 157 RALMNGGQVILADEPTGALDSHSGEEVMAILHQLRDRGHTVIIVTHDPQVAAQAERVIEIRDGEIVRNPPAQEKV 231 (648)
T ss_pred HHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHhCCEEEEEECCEEEeecCccccc
Confidence 99999999999999999999999999999998875 478999999999998889999999999999999999875
|
|
| >TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-34 Score=312.39 Aligned_cols=186 Identities=26% Similarity=0.462 Sum_probs=155.0
Q ss_pred EEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcceEEEcCCCCC---CcccHHHHHhcC
Q 000984 407 ISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVL---FTGSIKDNIAYG 483 (1198)
Q Consensus 407 l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l---~~~ti~~Ni~~~ 483 (1198)
|++++||+++|+|+||||||||+++|.|+++|++|+|.+||.++. ..+++++|++|+|.+ ++.|+++|+.++
T Consensus 1 l~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~-----~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~ 75 (223)
T TIGR03771 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPG-----KGWRHIGYVPQRHEFAWDFPISVAHTVMSG 75 (223)
T ss_pred CccCCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCccch-----HhhCcEEEecccccccCCCCccHHHHHHhc
Confidence 578999999999999999999999999999999999999998763 346789999999976 457999999875
Q ss_pred CCC-------CC---HHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhhccCCCEEEEeCCCCCC
Q 000984 484 KDD-------AT---TEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSAL 553 (1198)
Q Consensus 484 ~~~-------~~---~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal~~~~~illlDe~ts~l 553 (1198)
... .. ++++.++++..+ ++.........||||||||++||||++++|+++||||||++|
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~l~~~~-----------l~~~~~~~~~~LS~G~~qrv~laral~~~p~llilDEP~~~L 144 (223)
T TIGR03771 76 RTGHIGWLRRPCVADFAAVRDALRRVG-----------LTELADRPVGELSGGQRQRVLVARALATRPSVLLLDEPFTGL 144 (223)
T ss_pred cccccccccCCcHHHHHHHHHHHHHhC-----------CchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccC
Confidence 210 11 122333344333 333344555679999999999999999999999999999999
Q ss_pred CHHhHHHHHHHHHHHh-CCCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChhhHhc
Q 000984 554 DAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVE 609 (1198)
Q Consensus 554 D~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~ 609 (1198)
|+.+.+.+.+.++++. +++|+|++||+++.+.. ||+|+++ +|++++.|+++++.+
T Consensus 145 D~~~~~~l~~~l~~~~~~~~tvii~sH~~~~~~~~~d~i~~l-~G~i~~~~~~~~~~~ 201 (223)
T TIGR03771 145 DMPTQELLTELFIELAGAGTAILMTTHDLAQAMATCDRVVLL-NGRVIADGTPQQLQD 201 (223)
T ss_pred CHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEE-CCEEEeecCHHHhcC
Confidence 9999999999998875 47899999999998865 9999999 799999999998865
|
This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown. |
| >cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-34 Score=312.58 Aligned_cols=197 Identities=24% Similarity=0.330 Sum_probs=154.5
Q ss_pred EEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcceE
Q 000984 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIG 463 (1198)
Q Consensus 384 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~ 463 (1198)
+.++|++.+|+. +++|+|+||+|++||+++|+||||||||||+++|.|+++|++|+|.++|.++...
T Consensus 23 l~~~~~~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~---------- 89 (224)
T cd03220 23 LGILGRKGEVGE---FWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGRVSSLL---------- 89 (224)
T ss_pred hhhhhhhhhcCC---eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEchhh----------
Confidence 567788888853 4699999999999999999999999999999999999999999999999875311
Q ss_pred EEcCCCCC-CcccHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhhccC
Q 000984 464 LVSQEPVL-FTGSIKDNIAYGKDD--ATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKD 540 (1198)
Q Consensus 464 ~v~Q~~~l-~~~ti~~Ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal~~~ 540 (1198)
.+.+.+ .+.|++||+.++... .+.++..+. ..+.++.+ |++.........||||||||++||||++++
T Consensus 90 --~~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~-----~~~~l~~~--~l~~~~~~~~~~LSgG~~qrv~laral~~~ 160 (224)
T cd03220 90 --GLGGGFNPELTGRENIYLNGRLLGLSRKEIDEK-----IDEIIEFS--ELGDFIDLPVKTYSSGMKARLAFAIATALE 160 (224)
T ss_pred --cccccCCCCCcHHHHHHHHHHHcCCCHHHHHHH-----HHHHHHHc--CChhhhhCChhhCCHHHHHHHHHHHHHhcC
Confidence 111222 357999999865321 122222111 11112222 344444455568999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHhHHHHHHHHHHHhC-CCeEEEEecCcchhhc-cCEEEEEeCCEEEEec
Q 000984 541 PRILLLDEATSALDAESEKVVQEALDRIMV-NRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKG 602 (1198)
Q Consensus 541 ~~illlDe~ts~lD~~~~~~i~~~i~~~~~-~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g 602 (1198)
|+++||||||++||+.+.+.+.+.+.++.+ ++|+|++||+++.+.. ||++++|++|++++.|
T Consensus 161 p~llllDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g 224 (224)
T cd03220 161 PDILLIDEVLAVGDAAFQEKCQRRLRELLKQGKTVILVSHDPSSIKRLCDRALVLEKGKIRFDG 224 (224)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEecC
Confidence 999999999999999999999999987654 5899999999998864 9999999999998765
|
Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2. |
| >TIGR01166 cbiO cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-34 Score=306.25 Aligned_cols=174 Identities=34% Similarity=0.539 Sum_probs=144.3
Q ss_pred CccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCC--cCHHHHhcceEEEcCCC--CCCcc
Q 000984 399 EQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKE--FQLQWIRKKIGLVSQEP--VLFTG 474 (1198)
Q Consensus 399 ~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~--~~~~~~r~~i~~v~Q~~--~l~~~ 474 (1198)
+.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. .....++++++|++|+| .+|..
T Consensus 5 ~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~ 84 (190)
T TIGR01166 5 PEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQLFAA 84 (190)
T ss_pred cceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceeEEECCEEccccccchHHHHhhEEEEecChhhccccc
Confidence 469999999999999999999999999999999999999999999999998852 23446678899999998 47888
Q ss_pred cHHHHHhcCCC--CCCHH----HHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhhccCCCEEEEeC
Q 000984 475 SIKDNIAYGKD--DATTE----EIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDE 548 (1198)
Q Consensus 475 ti~~Ni~~~~~--~~~~~----~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal~~~~~illlDe 548 (1198)
|++||+.++.. ..+.+ ++.++++.. |++.........||||||||++||||++++|+++||||
T Consensus 85 tv~~nl~~~~~~~~~~~~~~~~~~~~~l~~~-----------~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDE 153 (190)
T TIGR01166 85 DVDQDVAFGPLNLGLSEAEVERRVREALTAV-----------GASGLRERPTHCLSGGEKKRVAIAGAVAMRPDVLLLDE 153 (190)
T ss_pred cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHc-----------CchhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 99999987521 12222 223333333 34444455567899999999999999999999999999
Q ss_pred CCCCCCHHhHHHHHHHHHHHh-CCCeEEEEecCcch
Q 000984 549 ATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLST 583 (1198)
Q Consensus 549 ~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~ 583 (1198)
||++||+.+.+.+.+.|+++. +++|+|++||+++.
T Consensus 154 Pt~~LD~~~~~~~~~~l~~~~~~~~tili~sH~~~~ 189 (190)
T TIGR01166 154 PTAGLDPAGREQMLAILRRLRAEGMTVVISTHDVDL 189 (190)
T ss_pred CcccCCHHHHHHHHHHHHHHHHcCCEEEEEeecccc
Confidence 999999999999999998875 46899999999874
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux. |
| >PRK13541 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-34 Score=304.89 Aligned_cols=189 Identities=20% Similarity=0.359 Sum_probs=157.1
Q ss_pred EEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcceE
Q 000984 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIG 463 (1198)
Q Consensus 384 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~ 463 (1198)
++++|++++|+. +.++ ++||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.++.+.. ++.++
T Consensus 2 l~~~~l~~~~~~---~~l~-~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~----~~~~~ 73 (195)
T PRK13541 2 LSLHQLQFNIEQ---KNLF-DLSITFLPSAITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKNCNINNIA----KPYCT 73 (195)
T ss_pred eEEEEeeEEECC---cEEE-EEEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCcccChhh----hhhEE
Confidence 789999999953 3355 599999999999999999999999999999999999999999999886543 34699
Q ss_pred EEcCCCCC-CcccHHHHHhcCCCCC-CHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhhccCC
Q 000984 464 LVSQEPVL-FTGSIKDNIAYGKDDA-TTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDP 541 (1198)
Q Consensus 464 ~v~Q~~~l-~~~ti~~Ni~~~~~~~-~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal~~~~ 541 (1198)
|++|++.+ +..|++||+.++.... ..+++..+++..++ +......+.+||||||||++||||++++|
T Consensus 74 ~~~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~l~~~~l-----------~~~~~~~~~~LS~G~~~rl~la~al~~~p 142 (195)
T PRK13541 74 YIGHNLGLKLEMTVFENLKFWSEIYNSAETLYAAIHYFKL-----------HDLLDEKCYSLSSGMQKIVAIARLIACQS 142 (195)
T ss_pred eccCCcCCCccCCHHHHHHHHHHhcccHHHHHHHHHHcCC-----------HhhhccChhhCCHHHHHHHHHHHHHhcCC
Confidence 99999855 6789999998754322 23344444444443 33345567789999999999999999999
Q ss_pred CEEEEeCCCCCCCHHhHHHHHHHHHHH-hCCCeEEEEecCcchhhccCEEE
Q 000984 542 RILLLDEATSALDAESEKVVQEALDRI-MVNRTTVIVAHRLSTVRNADMIA 591 (1198)
Q Consensus 542 ~illlDe~ts~lD~~~~~~i~~~i~~~-~~~~t~i~itH~~~~~~~~d~i~ 591 (1198)
+++||||||++||+.+.+.+.+.++.. .+++|+|++||+++.++.+|.|.
T Consensus 143 ~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~i~~~~~~~ 193 (195)
T PRK13541 143 DLWLLDEVETNLSKENRDLLNNLIVMKANSGGIVLLSSHLESSIKSAQILQ 193 (195)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCccccchhheec
Confidence 999999999999999999999998754 35799999999999999999763
|
|
| >TIGR01257 rim_protein retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-32 Score=362.02 Aligned_cols=220 Identities=19% Similarity=0.342 Sum_probs=184.0
Q ss_pred ccEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcc
Q 000984 382 GDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKK 461 (1198)
Q Consensus 382 g~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~ 461 (1198)
..|+++|++++|++. .+.+|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.++|.++.+ +....|++
T Consensus 1936 ~~L~v~nLsK~Y~~~-~~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~ptsG~I~i~G~~i~~-~~~~~r~~ 2013 (2272)
T TIGR01257 1936 DILRLNELTKVYSGT-SSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILT-NISDVHQN 2013 (2272)
T ss_pred ceEEEEEEEEEECCC-CceEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECcc-hHHHHhhh
Confidence 459999999999642 2569999999999999999999999999999999999999999999999999865 45567889
Q ss_pred eEEEcCCCCCCc-ccHHHHHhcCCC--CCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhhc
Q 000984 462 IGLVSQEPVLFT-GSIKDNIAYGKD--DATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAIL 538 (1198)
Q Consensus 462 i~~v~Q~~~l~~-~ti~~Ni~~~~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal~ 538 (1198)
||||||++.++. .|++||+.+... ....++..+.. .+.++.+ |++.........||||||||++|||||+
T Consensus 2014 IGy~pQ~~~L~~~LTv~E~L~l~a~l~g~~~~~~~~~v-----~~lLe~l--gL~~~~dk~~~~LSGGqKqRLslA~ALi 2086 (2272)
T TIGR01257 2014 MGYCPQFDAIDDLLTGREHLYLYARLRGVPAEEIEKVA-----NWSIQSL--GLSLYADRLAGTYSGGNKRKLSTAIALI 2086 (2272)
T ss_pred EEEEeccccCCCCCCHHHHHHHHHHhcCCCHHHHHHHH-----HHHHHHc--CCHHHhcCChhhCCHHHHHHHHHHHHHh
Confidence 999999998885 699999976311 11222222111 1223333 4554556666789999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh-CCCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChhhHhcC
Q 000984 539 KDPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVED 610 (1198)
Q Consensus 539 ~~~~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 610 (1198)
.+|+|++|||||++||+.+.+.+.+.|+++. +++|+|++||+++.+.. ||||++|++|++++.|+++++.++
T Consensus 2087 ~~P~VLLLDEPTsGLDp~sr~~l~~lL~~l~~~g~TIILtTH~mee~e~lcDrV~IL~~G~i~~~Gs~q~Lk~~ 2160 (2272)
T TIGR01257 2087 GCPPLVLLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLTSHSMEECEALCTRLAIMVKGAFQCLGTIQHLKSK 2160 (2272)
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHHH
Confidence 9999999999999999999999999998864 57899999999999875 999999999999999999998654
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. |
| >TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-34 Score=345.53 Aligned_cols=217 Identities=22% Similarity=0.323 Sum_probs=174.1
Q ss_pred cEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCC-CCCeEEECCeecCCcC-HHHHhc
Q 000984 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDP-QAGEVLIDGINLKEFQ-LQWIRK 460 (1198)
Q Consensus 383 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~-~~G~i~i~g~~~~~~~-~~~~r~ 460 (1198)
.|+++|++++|+...+..+|+|+||++++||+++|+||||||||||+++|+|+++| ++|+|.++|.++...+ ...+|+
T Consensus 257 ~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~~G~i~~~g~~~~~~~~~~~~~~ 336 (500)
T TIGR02633 257 ILEARNLTCWDVINPHRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGNVFINGKPVDIRNPAQAIRA 336 (500)
T ss_pred eEEEeCCcccccccccccccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCeEEEECCEECCCCCHHHHHhC
Confidence 48999999998432224699999999999999999999999999999999999985 8999999999986543 356678
Q ss_pred ceEEEcCCC---CCCc-ccHHHHHhcCCCC-C------CHHHHHHHHHHhcHHHHHHhCCCCccc-hhcCCCCCCChHHH
Q 000984 461 KIGLVSQEP---VLFT-GSIKDNIAYGKDD-A------TTEEIRVATELANAAKFIDKLPQGIDT-LVGEHGTQLSGGQK 528 (1198)
Q Consensus 461 ~i~~v~Q~~---~l~~-~ti~~Ni~~~~~~-~------~~~~~~~~~~~~~~~~~i~~l~~g~~t-~v~~~g~~lSgGqk 528 (1198)
+++|++|++ .++. .|+++|+.++... . ...+. ...+.+.++.+ |+.. ........||||||
T Consensus 337 ~i~~v~q~~~~~~l~~~~tv~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~~~--~l~~~~~~~~~~~LSgGqk 409 (500)
T TIGR02633 337 GIAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAAE-----LQIIGSAIQRL--KVKTASPFLPIGRLSGGNQ 409 (500)
T ss_pred CCEEcCcchhhCCcCCCCCHHHHhcchhhhhhccCCcCCHHHH-----HHHHHHHHHhc--CccCCCccCccccCCHHHH
Confidence 999999996 3664 6999999875310 0 11111 11223344444 4432 24555678999999
Q ss_pred HHHhHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh-CCCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChhh
Q 000984 529 QRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSK 606 (1198)
Q Consensus 529 qri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~ 606 (1198)
||++||||++.+|++|||||||++||+.+...+.+.++++. +++|+|++||+++.+.. ||++++|++|+++..++.++
T Consensus 410 qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~~~~~~ 489 (500)
T TIGR02633 410 QKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQEGVAIIVVSSELAEVLGLSDRVLVIGEGKLKGDFVNHA 489 (500)
T ss_pred HHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEEcccc
Confidence 99999999999999999999999999999999999888764 47899999999998865 99999999999997765443
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). |
| >PRK09700 D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-33 Score=344.33 Aligned_cols=210 Identities=20% Similarity=0.336 Sum_probs=172.6
Q ss_pred cEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCH-HHHhcc
Q 000984 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQL-QWIRKK 461 (1198)
Q Consensus 383 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~-~~~r~~ 461 (1198)
.++++|+++.|. .+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. ..+|++
T Consensus 265 ~l~~~~l~~~~~-----~~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~ 339 (510)
T PRK09700 265 VFEVRNVTSRDR-----KKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPRSPLDAVKKG 339 (510)
T ss_pred EEEEeCccccCC-----CcccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCEECCCCCHHHHHHCC
Confidence 599999998762 28999999999999999999999999999999999999999999999998866543 456778
Q ss_pred eEEEcCCC---CCCc-ccHHHHHhcCCCCC-----------CHHHHHHHHHHhcHHHHHHhCCCCcc-chhcCCCCCCCh
Q 000984 462 IGLVSQEP---VLFT-GSIKDNIAYGKDDA-----------TTEEIRVATELANAAKFIDKLPQGID-TLVGEHGTQLSG 525 (1198)
Q Consensus 462 i~~v~Q~~---~l~~-~ti~~Ni~~~~~~~-----------~~~~~~~~~~~~~~~~~i~~l~~g~~-t~v~~~g~~lSg 525 (1198)
++|++|++ .++. .|+++|+.++.... ...+. ...+.+.++.+ |+. .........|||
T Consensus 340 i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~~~--~l~~~~~~~~~~~LSg 412 (510)
T PRK09700 340 MAYITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDE-----QRTAENQRELL--ALKCHSVNQNITELSG 412 (510)
T ss_pred cEEccCccccCCCcCCCcHHHHhccccccccccccccccccChHHH-----HHHHHHHHHhc--CCCCCCccCccccCCh
Confidence 99999984 4664 59999998753210 11111 11123344444 453 345666678999
Q ss_pred HHHHHHhHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh-CCCeEEEEecCcchhhc-cCEEEEEeCCEEEEecC
Q 000984 526 GQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGT 603 (1198)
Q Consensus 526 Gqkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~ 603 (1198)
|||||++||||++.+|++|||||||++||+.+.+.+.+.|+++. +++|+|+|||+++.+.. ||+|++|++|++++.++
T Consensus 413 Gq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~~ 492 (510)
T PRK09700 413 GNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLADDGKVILMVSSELPEIITVCDRIAVFCEGRLTQILT 492 (510)
T ss_pred HHHHHHHHHHHHhcCCCEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhhCCEEEEEECCEEEEEec
Confidence 99999999999999999999999999999999999999998764 47899999999998764 99999999999998876
Q ss_pred h
Q 000984 604 H 604 (1198)
Q Consensus 604 ~ 604 (1198)
.
T Consensus 493 ~ 493 (510)
T PRK09700 493 N 493 (510)
T ss_pred C
Confidence 5
|
|
| >TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-33 Score=322.36 Aligned_cols=190 Identities=33% Similarity=0.558 Sum_probs=156.6
Q ss_pred EEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcceEEEcCCCCCCc-ccHHHHHhcCCCC--CCHHHHH
Q 000984 417 LVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFT-GSIKDNIAYGKDD--ATTEEIR 493 (1198)
Q Consensus 417 ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~~-~ti~~Ni~~~~~~--~~~~~~~ 493 (1198)
|+||||||||||+++|+|+++|++|+|.++|.++.+.+. .+++++|++|++.+|. .|+++|+.|+... .+.++..
T Consensus 1 l~G~nGsGKSTLl~~iaGl~~p~~G~I~i~g~~i~~~~~--~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~ 78 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVPP--HLRHINMVFQSYALFPHMTVEENVAFGLKMRKVPRAEIK 78 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCH--HHCCEEEEecCccccCCCcHHHHHHHHHhhcCCCHHHHH
Confidence 689999999999999999999999999999999877654 3678999999999996 5999999986421 1222211
Q ss_pred HHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhC--C
Q 000984 494 VATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMV--N 571 (1198)
Q Consensus 494 ~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~ 571 (1198)
+ .+.+.++.+ |++........+||||||||++|||||+++|+++||||||++||+.+.+.+.+.|+++.+ +
T Consensus 79 ~-----~~~~~l~~~--~l~~~~~~~~~~LSgGq~qRvalaraL~~~p~lllLDEP~s~LD~~~~~~l~~~l~~l~~~~g 151 (325)
T TIGR01187 79 P-----RVLEALRLV--QLEEFADRKPHQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQLG 151 (325)
T ss_pred H-----HHHHHHHHc--CCcchhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcC
Confidence 1 112223333 455555666778999999999999999999999999999999999999999999988753 6
Q ss_pred CeEEEEecCcchhhc-cCEEEEEeCCEEEEecChhhHhcCCCchh
Q 000984 572 RTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVEDPEGAY 615 (1198)
Q Consensus 572 ~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~~~~~ 615 (1198)
+|+|+|||+++.+.. ||+|++|++|++++.|+++++..++...+
T Consensus 152 ~tiiivTHd~~e~~~~~d~i~vl~~G~i~~~g~~~~~~~~~~~~~ 196 (325)
T TIGR01187 152 ITFVFVTHDQEEAMTMSDRIAIMRKGKIAQIGTPEEIYEEPANLF 196 (325)
T ss_pred CEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCCCcHH
Confidence 899999999998765 99999999999999999999987654333
|
This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included). |
| >PRK10762 D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-33 Score=342.71 Aligned_cols=210 Identities=21% Similarity=0.349 Sum_probs=173.3
Q ss_pred cEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCH-HHHhcc
Q 000984 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQL-QWIRKK 461 (1198)
Q Consensus 383 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~-~~~r~~ 461 (1198)
.|+++|+++ ++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. +.+|++
T Consensus 257 ~l~~~~l~~--------~~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~p~~G~I~~~g~~i~~~~~~~~~~~~ 328 (501)
T PRK10762 257 RLKVDNLSG--------PGVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRSPQDGLANG 328 (501)
T ss_pred EEEEeCccc--------CCcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHHCC
Confidence 488999973 27999999999999999999999999999999999999999999999999876654 346778
Q ss_pred eEEEcCCC---CCC-cccHHHHHhcCCCC--------CCHHHHHHHHHHhcHHHHHHhCCCCcc-chhcCCCCCCChHHH
Q 000984 462 IGLVSQEP---VLF-TGSIKDNIAYGKDD--------ATTEEIRVATELANAAKFIDKLPQGID-TLVGEHGTQLSGGQK 528 (1198)
Q Consensus 462 i~~v~Q~~---~l~-~~ti~~Ni~~~~~~--------~~~~~~~~~~~~~~~~~~i~~l~~g~~-t~v~~~g~~lSgGqk 528 (1198)
++|+||+| .++ ..|+++|+.++... .+.++. ...+.+.++.+ |+. .........||||||
T Consensus 329 i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~~~--~l~~~~~~~~~~~LSgGek 401 (501)
T PRK10762 329 IVYISEDRKRDGLVLGMSVKENMSLTALRYFSRAGGSLKHADE-----QQAVSDFIRLF--NIKTPSMEQAIGLLSGGNQ 401 (501)
T ss_pred CEEecCccccCCCcCCCcHHHHhhhhhhhhhcccccccCHHHH-----HHHHHHHHHhc--CCCCCCccCchhhCCHHHH
Confidence 99999997 355 47999999874210 011111 11223444444 453 345667778999999
Q ss_pred HHHhHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh-CCCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChhh
Q 000984 529 QRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSK 606 (1198)
Q Consensus 529 qri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~ 606 (1198)
||++||||++.+|++|||||||++||+.+.+.+.+.|+++. +++|+|++||+++.+.. ||+|++|++|+++..|++++
T Consensus 402 qrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~~~~~~ 481 (501)
T PRK10762 402 QKVAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFKAEGLSIILVSSEMPEVLGMSDRILVMHEGRISGEFTREQ 481 (501)
T ss_pred HHHHHHHHHhhCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhhCCEEEEEECCEEEEEecccc
Confidence 99999999999999999999999999999999999998875 47899999999998865 99999999999999998766
Q ss_pred H
Q 000984 607 L 607 (1198)
Q Consensus 607 l 607 (1198)
+
T Consensus 482 ~ 482 (501)
T PRK10762 482 A 482 (501)
T ss_pred C
Confidence 4
|
|
| >cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-33 Score=305.57 Aligned_cols=193 Identities=24% Similarity=0.408 Sum_probs=156.1
Q ss_pred EEcCCCCCCccccceeEEEe-----CCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcceEEE
Q 000984 391 FSYPARPNEQIFSGFSISIS-----SGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLV 465 (1198)
Q Consensus 391 ~~y~~~~~~~~l~~i~l~i~-----~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~~v 465 (1198)
|+||.. .+.++|++|+++ +||+++|+||||||||||+++|+|+++|++|+|.++|. +|+|+
T Consensus 1 ~~y~~~--~~~~~~~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~p~~G~i~~~g~------------~i~~~ 66 (246)
T cd03237 1 YTYPTM--KKTLGEFTLEVEGGSISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELD------------TVSYK 66 (246)
T ss_pred CCCccc--ccccCcEEEEEecCCcCCCCEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCc------------eEEEe
Confidence 568642 458899999887 69999999999999999999999999999999999984 69999
Q ss_pred cCCCC-CCcccHHHHHhcCCCCC-C-HHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhhccCCC
Q 000984 466 SQEPV-LFTGSIKDNIAYGKDDA-T-TEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPR 542 (1198)
Q Consensus 466 ~Q~~~-l~~~ti~~Ni~~~~~~~-~-~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal~~~~~ 542 (1198)
+|++. .+..|++||+.+..... . .....+++ +.+ |++.........||||||||++|||||+++|+
T Consensus 67 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l---------~~l--~l~~~~~~~~~~LSgGe~qrv~iaraL~~~p~ 135 (246)
T cd03237 67 PQYIKADYEGTVRDLLSSITKDFYTHPYFKTEIA---------KPL--QIEQILDREVPELSGGELQRVAIAACLSKDAD 135 (246)
T ss_pred cccccCCCCCCHHHHHHHHhhhccccHHHHHHHH---------HHc--CCHHHhhCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 99997 46899999997543211 1 11122222 222 45545566677899999999999999999999
Q ss_pred EEEEeCCCCCCCHHhHHHHHHHHHHHhC--CCeEEEEecCcchhhc-cCEEEEEeCCEEE--EecChhhHh
Q 000984 543 ILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRN-ADMIAVIHRGKIV--EKGTHSKLV 608 (1198)
Q Consensus 543 illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~~-~d~i~~l~~G~i~--~~g~~~~l~ 608 (1198)
++||||||++||+.+...+.+.|+++.+ ++|+|+|||+++.+.. ||+|++|+++..+ ..++|.++.
T Consensus 136 llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiivsHd~~~~~~~~d~i~~l~~~~~~~~~~~~~~~~~ 206 (246)
T cd03237 136 IYLLDEPSAYLDVEQRLMASKVIRRFAENNEKTAFVVEHDIIMIDYLADRLIVFEGEPSVNGVANPPQSLR 206 (246)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEcCCCeeEEEeCCchHHH
Confidence 9999999999999999999999988753 7899999999999875 9999999775443 455666554
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. |
| >TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-33 Score=372.72 Aligned_cols=213 Identities=22% Similarity=0.417 Sum_probs=179.1
Q ss_pred cEEEEeEEEEcCCC-CCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCC---CCCCeEEECCeecCCcCHHHH
Q 000984 383 DIELRDVYFSYPAR-PNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYD---PQAGEVLIDGINLKEFQLQWI 458 (1198)
Q Consensus 383 ~i~~~~v~~~y~~~-~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~---~~~G~i~i~g~~~~~~~~~~~ 458 (1198)
.++++|++++|+.+ .++++|+|+|+++++||+++|+||||||||||+++|.|..+ |++|+|.+||+++. ..+
T Consensus 759 ~l~~~nl~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~----~~~ 834 (1394)
T TIGR00956 759 IFHWRNLTYEVKIKKEKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLD----SSF 834 (1394)
T ss_pred eEEEEeeEEEecCCCCCcEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECC----hhh
Confidence 47899999999632 23579999999999999999999999999999999999997 68899999999874 257
Q ss_pred hcceEEEcCCCC-CCcccHHHHHhcCC----C-CCCHHH----HHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHH
Q 000984 459 RKKIGLVSQEPV-LFTGSIKDNIAYGK----D-DATTEE----IRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQK 528 (1198)
Q Consensus 459 r~~i~~v~Q~~~-l~~~ti~~Ni~~~~----~-~~~~~~----~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqk 528 (1198)
|++++||+|++. ++..|||||+.|+. | ..++++ +.++++..++ .+-.|+.+|+.|.+||||||
T Consensus 835 ~~~i~yv~Q~~~~~~~~Tv~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L-------~~~~d~~v~~~~~~LSgGqr 907 (1394)
T TIGR00956 835 QRSIGYVQQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEM-------ESYADAVVGVPGEGLNVEQR 907 (1394)
T ss_pred hcceeeecccccCCCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCC-------hhhCCCeeCCCCCCCCHHHh
Confidence 889999999875 45789999999742 1 123322 3344444333 33468889988889999999
Q ss_pred HHHhHHHhhccCCC-EEEEeCCCCCCCHHhHHHHHHHHHHHh-CCCeEEEEecCcchh--hccCEEEEEeCC-EEEEecC
Q 000984 529 QRIAIARAILKDPR-ILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTV--RNADMIAVIHRG-KIVEKGT 603 (1198)
Q Consensus 529 qri~lARal~~~~~-illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~--~~~d~i~~l~~G-~i~~~g~ 603 (1198)
||++|||||+.+|+ ||+||||||+||+.+...+.+.++++. +++|+|+++|+++.. ..+|++++|++| ++++.|+
T Consensus 908 qRl~Ia~aL~~~P~~iLlLDEPTsgLD~~~~~~i~~~L~~la~~g~tvI~t~H~~~~~~~~~~D~vl~L~~GG~iv~~G~ 987 (1394)
T TIGR00956 908 KRLTIGVELVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLADHGQAILCTIHQPSAILFEEFDRLLLLQKGGQTVYFGD 987 (1394)
T ss_pred hHHHHHHHHHcCCCeEEEEcCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHhcCEEEEEcCCCEEEEECC
Confidence 99999999999997 999999999999999999999998874 579999999999963 579999999987 9999999
Q ss_pred hhh
Q 000984 604 HSK 606 (1198)
Q Consensus 604 ~~~ 606 (1198)
+.+
T Consensus 988 ~~~ 990 (1394)
T TIGR00956 988 LGE 990 (1394)
T ss_pred ccc
Confidence 754
|
|
| >PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-33 Score=340.40 Aligned_cols=212 Identities=24% Similarity=0.349 Sum_probs=173.3
Q ss_pred cEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcC-HHHHhcc
Q 000984 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQ-LQWIRKK 461 (1198)
Q Consensus 383 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~-~~~~r~~ 461 (1198)
.++++|+++. .+++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.... .+..|++
T Consensus 257 ~l~~~~~~~~-------~~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~ 329 (501)
T PRK11288 257 RLRLDGLKGP-------GLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPIDIRSPRDAIRAG 329 (501)
T ss_pred EEEEeccccC-------CcccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCcCCCceEEECCEECCCCCHHHHHhCC
Confidence 4889999732 3899999999999999999999999999999999999999999999999886543 3455788
Q ss_pred eEEEcCCCC---CC-cccHHHHHhcCCCCC--------CHHHHHHHHHHhcHHHHHHhCCCCcc-chhcCCCCCCChHHH
Q 000984 462 IGLVSQEPV---LF-TGSIKDNIAYGKDDA--------TTEEIRVATELANAAKFIDKLPQGID-TLVGEHGTQLSGGQK 528 (1198)
Q Consensus 462 i~~v~Q~~~---l~-~~ti~~Ni~~~~~~~--------~~~~~~~~~~~~~~~~~i~~l~~g~~-t~v~~~g~~lSgGqk 528 (1198)
++|++|+|. +| ..|+.||+.++.... ...+.. ..+.+.+..+ |++ ........+||||||
T Consensus 330 i~~~~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~~LSgGq~ 402 (501)
T PRK11288 330 IMLCPEDRKAEGIIPVHSVADNINISARRHHLRAGCLINNRWEA-----ENADRFIRSL--NIKTPSREQLIMNLSGGNQ 402 (501)
T ss_pred CEEcCcCHhhCCCcCCCCHHHHhccccchhhcccccccChHHHH-----HHHHHHHHhc--CcccCCccCccccCCHHHH
Confidence 999999973 55 579999998753211 111111 1123344444 442 334566678999999
Q ss_pred HHHhHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhC-CCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChhh
Q 000984 529 QRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMV-NRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSK 606 (1198)
Q Consensus 529 qri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~-~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~ 606 (1198)
||++||||++.+|++|||||||++||+.+.+.+.+.|+++.+ +.|+|++||+++.+.. ||++++|++|++++.|++++
T Consensus 403 qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~~~~~~d~i~~l~~g~i~~~~~~~~ 482 (501)
T PRK11288 403 QKAILGRWLSEDMKVILLDEPTRGIDVGAKHEIYNVIYELAAQGVAVLFVSSDLPEVLGVADRIVVMREGRIAGELAREQ 482 (501)
T ss_pred HHHHHHHHHccCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHhhCCEEEEEECCEEEEEEcccc
Confidence 999999999999999999999999999999999999988754 7899999999998865 99999999999999998876
Q ss_pred Hh
Q 000984 607 LV 608 (1198)
Q Consensus 607 l~ 608 (1198)
..
T Consensus 483 ~~ 484 (501)
T PRK11288 483 AT 484 (501)
T ss_pred CC
Confidence 54
|
|
| >COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-30 Score=277.21 Aligned_cols=405 Identities=21% Similarity=0.225 Sum_probs=296.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccccccCCCChhhHHHHHHhhHHHHHHHHHHHHHHHH
Q 000984 766 IYLALGAGSFLLSPAQSYFFAVAGNKLIQRIRSMCFEKVIHMEVSWFDEPEHSSGAIGARLSADAASVRALVGDALARIV 845 (1198)
Q Consensus 766 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~~l~~~ll~~p~~fFd~~~~~~G~i~~r~s~D~~~i~~~l~~~l~~~i 845 (1198)
.++++.++..+.+.+........+.+...++|.++.++++..|+.-++ +-.+++++.++++|+..|. +-...++.+.
T Consensus 53 ~f~~llllf~~ss~is~lg~t~~gq~~I~klr~~~~~kil~tplerie--r~~~~rlla~L~~Dvr~IS-f~~s~lp~~~ 129 (546)
T COG4615 53 EFLGLLLLFMVSSLISQLGLTTLGQHFIYKLRSEFIKKILDTPLERIE--RLGSARLLAGLTSDVRNIS-FAFSRLPELV 129 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH--Hhcccchhhhhccccccee-ehHhhhHHHH
Confidence 344444455556667778888999999999999999999999999999 5889999999999999998 5556778899
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhchhHHHHHhcchHHH-
Q 000984 846 QNISTAAAGLIIAFTASWQLALIILVMLPLIGVSGYTQMKFMKGFSADAKMKYEEASQVANDAVGSIRTVASFCAEEKV- 924 (1198)
Q Consensus 846 ~~~~~~i~~li~~~~~~~~l~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIraf~~e~~~- 924 (1198)
++...+++++.++++.++++.+++++++.+..+..++.+.+.-+..+..++...++.+..+..++|-+..+......+.
T Consensus 130 qa~il~l~s~aYLayLSp~mf~l~vV~ivv~~~~~~~~m~rv~k~~~aare~ed~Lq~~y~~il~G~KEL~l~r~R~~~~ 209 (546)
T COG4615 130 QAIILTLGSAAYLAYLSPKMFLLTVVWIVVTIWGGFVLMARVYKHMAAARETEDKLQNDYQTILEGRKELTLNRERAEYV 209 (546)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcchhhheechHHHHHH
Confidence 9999999999999999999999999999999999999888888888899999999999999999999998876533222
Q ss_pred -HHHHHHHhhhHHHHhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHhhhh
Q 000984 925 -MQLYKKKCEAPMKTGIRQGMVSGGGFGASFFLLFAFYAASFYAGARLVEDGKATFSDVFKVFFSLTMTAIGISQSSSFS 1003 (1198)
Q Consensus 925 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~~t~g~l~~~~~~~~~~~~~l~~~~~~~ 1003 (1198)
.+.|....+...+...+..........+.+++....+.+++|+..... .-+......+.+.+.+.-.|+.++....
T Consensus 210 h~~~~~~~a~~~r~~~~~~n~f~~la~~~~ni~l~~lIGlvf~lal~~~---w~st~~a~tivlvlLflr~pL~s~vgil 286 (546)
T COG4615 210 HNNLYIPDAQEYRHHIIRANTFHLLAVNWSNIMLLGLIGLVFWLALSLG---WASTNVAATIVLVLLFLRTPLLSAVGIL 286 (546)
T ss_pred HhhhcCcchHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhc---cchhhHHHHHHHHHHHHhhHHHHHHhhh
Confidence 122222222222211111111112223333444444444545443322 2233344445556667788999999999
Q ss_pred hHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCcccCCcccEEEeeeeEECCCCCCccccccceEEeeCCCEEEEEcCCCCC
Q 000984 1004 SDSNKAKSAAASIFAIIDRESKIDPSDESGTILEDVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSG 1083 (1198)
Q Consensus 1004 ~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~~~~~~G~I~f~nVsf~Y~~~~~~~vL~~is~~I~~GekvaIVG~SGSG 1083 (1198)
+.+..+.++.+++.++-..|+..+-.. +.+.+..+ .||++||.|+|++. ..-+.-||++|+.||.|=|+|.+|||
T Consensus 287 P~l~~AqvA~~kiakle~~~~~a~~~~--~q~~p~~~-~lelrnvrfay~~~--~FhvgPiNl~ikrGelvFliG~NGsG 361 (546)
T COG4615 287 PTLLTAQVAFNKIAKLELAPYKADFPR--PQAFPDWK-TLELRNVRFAYQDN--AFHVGPINLTIKRGELVFLIGGNGSG 361 (546)
T ss_pred hHHHHHHHHHHHHHHhhcCCccccCCC--CCcCCccc-ceeeeeeeeccCcc--cceecceeeEEecCcEEEEECCCCCc
Confidence 999999999999998765433221111 11122233 59999999999743 24588999999999999999999999
Q ss_pred HHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHhhcceeccccccccccHHHHHhcCCCCCCCHHHHHHHHHHcchHH
Q 000984 1084 KSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHK 1163 (1198)
Q Consensus 1084 KSTL~~lL~R~ydp~~G~I~IDG~dI~~i~l~~LR~~IsiV~Qdp~LF~gTIreNI~~g~~~~~tdeei~~Al~~A~l~d 1163 (1198)
|||+++||.|+|.|++|+|++||.+++.=++++.|+-+|-|+-|-+||+.++ |+...++.+.+..-++.-.+..
T Consensus 362 KST~~~LLtGL~~PqsG~I~ldg~pV~~e~ledYR~LfSavFsDyhLF~~ll------~~e~~as~q~i~~~LqrLel~~ 435 (546)
T COG4615 362 KSTLAMLLTGLYQPQSGEILLDGKPVSAEQLEDYRKLFSAVFSDYHLFDQLL------GPEGKASPQLIEKWLQRLELAH 435 (546)
T ss_pred HHHHHHHHhcccCCCCCceeECCccCCCCCHHHHHHHHHHHhhhHhhhHhhh------CCccCCChHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999999999999999865 5443377776655444333222
Q ss_pred HH---------HhccccccceeeeeeccccccCC
Q 000984 1164 FI---------CSLQQVRTSRLLLVMIPWLESED 1188 (1198)
Q Consensus 1164 fI---------~~LP~g~dt~v~~~~~~~~~~~~ 1188 (1198)
.. -+|.-|-.-++|+. +.|||..|
T Consensus 436 ktsl~d~~fs~~kLStGQkKRlAll-~AllEeR~ 468 (546)
T COG4615 436 KTSLNDGRFSNLKLSTGQKKRLALL-LALLEERD 468 (546)
T ss_pred hhcccCCcccccccccchHHHHHHH-HHHHhhCC
Confidence 22 23444555555554 44666544
|
|
| >cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-33 Score=278.76 Aligned_cols=143 Identities=38% Similarity=0.598 Sum_probs=133.7
Q ss_pred EEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcceE
Q 000984 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIG 463 (1198)
Q Consensus 384 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~ 463 (1198)
++++|++++|++ .++|+++||++++||.++|+||||||||||+++|.|+++|++|+|.+||. ..++
T Consensus 1 l~~~~l~~~~~~---~~~l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~-----------~~i~ 66 (144)
T cd03221 1 IELENLSKTYGG---KLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGST-----------VKIG 66 (144)
T ss_pred CEEEEEEEEECC---ceEEEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCe-----------EEEE
Confidence 468999999964 35999999999999999999999999999999999999999999999994 4799
Q ss_pred EEcCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhhccCCCE
Q 000984 464 LVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRI 543 (1198)
Q Consensus 464 ~v~Q~~~l~~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal~~~~~i 543 (1198)
|++| ||+||+||++||||++++|++
T Consensus 67 ~~~~-------------------------------------------------------lS~G~~~rv~laral~~~p~i 91 (144)
T cd03221 67 YFEQ-------------------------------------------------------LSGGEKMRLALAKLLLENPNL 91 (144)
T ss_pred EEcc-------------------------------------------------------CCHHHHHHHHHHHHHhcCCCE
Confidence 9999 999999999999999999999
Q ss_pred EEEeCCCCCCCHHhHHHHHHHHHHHhCCCeEEEEecCcchhhc-cCEEEEEeCCE
Q 000984 544 LLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRN-ADMIAVIHRGK 597 (1198)
Q Consensus 544 lllDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~-~d~i~~l~~G~ 597 (1198)
+||||||++||+.+...+.+.++++ ++|+|++||+++.+.. ||++++|++|+
T Consensus 92 lllDEP~~~LD~~~~~~l~~~l~~~--~~til~~th~~~~~~~~~d~v~~l~~g~ 144 (144)
T cd03221 92 LLLDEPTNHLDLESIEALEEALKEY--PGTVILVSHDRYFLDQVATKIIELEDGK 144 (144)
T ss_pred EEEeCCccCCCHHHHHHHHHHHHHc--CCEEEEEECCHHHHHHhCCEEEEEeCCC
Confidence 9999999999999999999999876 5799999999999865 89999999985
|
EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. |
| >PRK15064 ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-32 Score=337.62 Aligned_cols=201 Identities=21% Similarity=0.366 Sum_probs=168.8
Q ss_pred cEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcce
Q 000984 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKI 462 (1198)
Q Consensus 383 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i 462 (1198)
.|+++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++| +.++
T Consensus 319 ~l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~-----------~~~i 384 (530)
T PRK15064 319 ALEVENLTKGFDN---GPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTVKWSE-----------NANI 384 (530)
T ss_pred eEEEEeeEEeeCC---ceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECC-----------ceEE
Confidence 5999999999963 3599999999999999999999999999999999999999999999988 3479
Q ss_pred EEEcCCCC--CC-cccHHHHHhcCC-CCCCHHHHHHHHHHhcHHHHHHhCCCCcc-chhcCCCCCCChHHHHHHhHHHhh
Q 000984 463 GLVSQEPV--LF-TGSIKDNIAYGK-DDATTEEIRVATELANAAKFIDKLPQGID-TLVGEHGTQLSGGQKQRIAIARAI 537 (1198)
Q Consensus 463 ~~v~Q~~~--l~-~~ti~~Ni~~~~-~~~~~~~~~~~~~~~~~~~~i~~l~~g~~-t~v~~~g~~lSgGqkqri~lARal 537 (1198)
+|++|++. ++ ..|+++|+.+.. ....++++...++.. |+. ........+||||||||++||||+
T Consensus 385 ~~~~q~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~~~-----------~l~~~~~~~~~~~LSgGq~qrv~la~al 453 (530)
T PRK15064 385 GYYAQDHAYDFENDLTLFDWMSQWRQEGDDEQAVRGTLGRL-----------LFSQDDIKKSVKVLSGGEKGRMLFGKLM 453 (530)
T ss_pred EEEcccccccCCCCCcHHHHHHHhccCCccHHHHHHHHHHc-----------CCChhHhcCcccccCHHHHHHHHHHHHH
Confidence 99999984 44 369999997422 112233344444333 332 234566778999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhCCCeEEEEecCcchhhc-cCEEEEEeCCEEE-EecChhhHhcC
Q 000984 538 LKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRN-ADMIAVIHRGKIV-EKGTHSKLVED 610 (1198)
Q Consensus 538 ~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~-~~g~~~~l~~~ 610 (1198)
+.+|++|||||||++||+.+...+.+.++++ +.|+|+|||+++.+.. ||+|++|++|+++ +.|+++++++.
T Consensus 454 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~~~~~~d~i~~l~~g~i~~~~g~~~~~~~~ 526 (530)
T PRK15064 454 MQKPNVLVMDEPTNHMDMESIESLNMALEKY--EGTLIFVSHDREFVSSLATRIIEITPDGVVDFSGTYEEYLRS 526 (530)
T ss_pred hcCCCEEEEcCCCCCCCHHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHhCCEEEEEECCeEEEcCCCHHHHHHH
Confidence 9999999999999999999999999999876 4699999999999875 9999999999998 78998887654
|
|
| >cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-33 Score=304.80 Aligned_cols=201 Identities=22% Similarity=0.357 Sum_probs=158.1
Q ss_pred EeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEE-----------ECCeecCCcCH
Q 000984 387 RDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVL-----------IDGINLKEFQL 455 (1198)
Q Consensus 387 ~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~-----------i~g~~~~~~~~ 455 (1198)
.|++++|+.. ..+|+|+|+ +++||+++|+||||||||||+++|+|+++|++|+|. ++|.++.+...
T Consensus 4 ~~~~~~y~~~--~~~l~~i~~-i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~p~~G~I~~~~~~~~~~~~~~g~~~~~~~~ 80 (255)
T cd03236 4 DEPVHRYGPN--SFKLHRLPV-PREGQVLGLVGPNGIGKSTALKILAGKLKPNLGKFDDPPDWDEILDEFRGSELQNYFT 80 (255)
T ss_pred cCcceeecCc--chhhhcCCC-CCCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEeeccccchhhhhccCchhhhhhH
Confidence 4788999632 359999994 999999999999999999999999999999999996 78888876543
Q ss_pred HHHhc--ceEEEcCCCCCCcccHHHHHhcCCCCCC-HHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHh
Q 000984 456 QWIRK--KIGLVSQEPVLFTGSIKDNIAYGKDDAT-TEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIA 532 (1198)
Q Consensus 456 ~~~r~--~i~~v~Q~~~l~~~ti~~Ni~~~~~~~~-~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~ 532 (1198)
...|. .++|++|++.++..++.+|+.+...... .++.. +.++.+ |++........+||||||||++
T Consensus 81 ~~~~~~~~i~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~---------~~l~~~--gl~~~~~~~~~~LS~G~~qrv~ 149 (255)
T cd03236 81 KLLEGDVKVIVKPQYVDLIPKAVKGKVGELLKKKDERGKLD---------ELVDQL--ELRHVLDRNIDQLSGGELQRVA 149 (255)
T ss_pred HhhhcccceeeecchhccCchHHHHHHHHHhchhHHHHHHH---------HHHHHc--CCchhhcCChhhCCHHHHHHHH
Confidence 33332 4789999887776566666553211111 12222 233333 5555667777899999999999
Q ss_pred HHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhC-CCeEEEEecCcchhhc-cCEEEEEeCCEEEEec
Q 000984 533 IARAILKDPRILLLDEATSALDAESEKVVQEALDRIMV-NRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKG 602 (1198)
Q Consensus 533 lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~-~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g 602 (1198)
||||++++|+++||||||++||+.+.+.+.+.++++.+ ++|+|++||+++.+.. ||+|++|+ |++.+.|
T Consensus 150 laral~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~~~~tIIiiSHd~~~~~~~ad~i~~l~-~~~~~~~ 220 (255)
T cd03236 150 IAAALARDADFYFFDEPSSYLDIKQRLNAARLIRELAEDDNYVLVVEHDLAVLDYLSDYIHCLY-GEPGAYG 220 (255)
T ss_pred HHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEC-CCCCcce
Confidence 99999999999999999999999999999999988754 6899999999999885 99999995 5565433
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. |
| >PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-32 Score=335.52 Aligned_cols=211 Identities=18% Similarity=0.347 Sum_probs=173.0
Q ss_pred cEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHH-Hhcc
Q 000984 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQW-IRKK 461 (1198)
Q Consensus 383 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~-~r~~ 461 (1198)
.|+++|++. .+|+|+||++++||+++|+||||||||||+++|.|+++|++|+|.++|.++...+... .|.+
T Consensus 268 ~l~~~~l~~--------~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~ 339 (510)
T PRK15439 268 VLTVEDLTG--------EGFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTAQRLARG 339 (510)
T ss_pred eEEEeCCCC--------CCccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEECCCCCHHHHHhCC
Confidence 488999983 1699999999999999999999999999999999999999999999999988776554 4568
Q ss_pred eEEEcCCC---CCCc-ccHHHHHhcCC----CC-CCHHHHHHHHHHhcHHHHHHhCCCCcc-chhcCCCCCCChHHHHHH
Q 000984 462 IGLVSQEP---VLFT-GSIKDNIAYGK----DD-ATTEEIRVATELANAAKFIDKLPQGID-TLVGEHGTQLSGGQKQRI 531 (1198)
Q Consensus 462 i~~v~Q~~---~l~~-~ti~~Ni~~~~----~~-~~~~~~~~~~~~~~~~~~i~~l~~g~~-t~v~~~g~~lSgGqkqri 531 (1198)
++|+||++ .+|. .|+.+|+.... .. ....+.+ ..+.+.++.+ |+. .........||||||||+
T Consensus 340 i~~v~q~~~~~~l~~~~t~~~~l~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~~LSgG~kqrl 412 (510)
T PRK15439 340 LVYLPEDRQSSGLYLDAPLAWNVCALTHNRRGFWIKPAREN-----AVLERYRRAL--NIKFNHAEQAARTLSGGNQQKV 412 (510)
T ss_pred cEECCCChhhCCccCCCcHHHHHHhhhhhhhccccChHHHH-----HHHHHHHHHc--CCCCCCccCccccCCcHHHHHH
Confidence 99999986 3564 59999986321 10 0111111 1123445554 554 345666778999999999
Q ss_pred hHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh-CCCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChhhHh
Q 000984 532 AIARAILKDPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLV 608 (1198)
Q Consensus 532 ~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~ 608 (1198)
+||||++.+|++|||||||++||+.+.+.+.+.|+++. +++|+|+|||+++.+.. ||+|++|++|+++..|+++++.
T Consensus 413 ~la~al~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tiIivsHd~~~i~~~~d~i~~l~~G~i~~~~~~~~~~ 491 (510)
T PRK15439 413 LIAKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRSIAAQNVAVLFISSDLEEIEQMADRVLVMHQGEISGALTGAAIN 491 (510)
T ss_pred HHHHHHhhCCCEEEECCCCcCcChhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEEccccCC
Confidence 99999999999999999999999999999999998875 47899999999999875 9999999999999999887664
|
|
| >COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-32 Score=275.64 Aligned_cols=202 Identities=28% Similarity=0.476 Sum_probs=171.9
Q ss_pred CCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcceEEEcCCCC--CC-cc
Q 000984 398 NEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPV--LF-TG 474 (1198)
Q Consensus 398 ~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~--l~-~~ 474 (1198)
++++|+++||+|+.|+++-|+|.||||||||+++|.|.+.|++|+|.|||+|+..++.+.....++-|+|||- .| +-
T Consensus 18 ek~~l~~~sL~I~~g~FvtViGsNGAGKSTlln~iaG~l~~t~G~I~Idg~dVtk~~~~~RA~~larVfQdp~~gt~~~l 97 (263)
T COG1101 18 EKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKKSVAKRANLLARVFQDPLAGTAPEL 97 (263)
T ss_pred HHHHHhcCceeecCCceEEEEcCCCccHHHHHHHhhCccccCCceEEECceecccCCHHHHhhHHHHHhcchhhCCcccc
Confidence 4689999999999999999999999999999999999999999999999999999999988889999999994 34 57
Q ss_pred cHHHHHhcCCCC-----CCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhhccCCCEEEEeCC
Q 000984 475 SIKDNIAYGKDD-----ATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEA 549 (1198)
Q Consensus 475 ti~~Ni~~~~~~-----~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal~~~~~illlDe~ 549 (1198)
||.||+.+.... .+. -...-+.....+.+..+|.|++..++.+..-|||||||-++|+.|.++.|+||+|||=
T Consensus 98 TieENl~la~~Rg~~rgl~~--~ln~~~~~~f~~~l~~l~lgLenrL~~~iglLSGGQRQalsL~MAtl~~pkiLLLDEH 175 (263)
T COG1101 98 TIEENLALAESRGKKRGLSS--ALNERRRSSFRERLARLGLGLENRLSDRIGLLSGGQRQALSLLMATLHPPKILLLDEH 175 (263)
T ss_pred cHHHHHHHHHhcCcccccch--hhhHHHHHHHHHHHhhcccchhhhhcChhhhccchHHHHHHHHHHhcCCCcEEEecch
Confidence 999999875321 111 1111122333456888999999999999999999999999999999999999999999
Q ss_pred CCCCCHHhHHHHHHHHHHHh--CCCeEEEEecCcchh-hccCEEEEEeCCEEEEe
Q 000984 550 TSALDAESEKVVQEALDRIM--VNRTTVIVAHRLSTV-RNADMIAVIHRGKIVEK 601 (1198)
Q Consensus 550 ts~lD~~~~~~i~~~i~~~~--~~~t~i~itH~~~~~-~~~d~i~~l~~G~i~~~ 601 (1198)
|+||||.+...+.+.-.+.- .+-|.++|||+++.. ..-+|.++|++|+|+-+
T Consensus 176 TAALDPkta~~vm~lT~kiV~~~klTtlMVTHnm~~Al~yG~RlImLh~G~IvlD 230 (263)
T COG1101 176 TAALDPKTAEFVMELTAKIVEEHKLTTLMVTHNMEDALDYGNRLIMLHSGKIVLD 230 (263)
T ss_pred hhcCCcchHHHHHHHHHHHHHhcCCceEEEeccHHHHHhhCCeEEEEeCCeEEEE
Confidence 99999999888776655442 246999999999875 55799999999999864
|
|
| >PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-32 Score=293.40 Aligned_cols=185 Identities=17% Similarity=0.245 Sum_probs=149.5
Q ss_pred cccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEE-ECCeecCCcCHHHHhcceEEEcCCCCCCcc-cHHH
Q 000984 401 IFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVL-IDGINLKEFQLQWIRKKIGLVSQEPVLFTG-SIKD 478 (1198)
Q Consensus 401 ~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~-i~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~-ti~~ 478 (1198)
+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|. ++|..+ .+.|++.+|.. |++|
T Consensus 2 vl~~vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~sG~i~~~~~~~~-------------~~~~~~~l~~~ltv~e 68 (213)
T PRK15177 2 VLDKTDFVMGYHEHIGILAAPGSGKTTLTRLLCGLDAPDEGDFIGLRGDAL-------------PLGANSFILPGLTGEE 68 (213)
T ss_pred eeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCCCEEEecCcee-------------ccccccccCCcCcHHH
Confidence 78999999999999999999999999999999999999999997 777432 23467778864 9999
Q ss_pred HHhcCCC--CCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhhccCCCEEEEeCCCCCCCHH
Q 000984 479 NIAYGKD--DATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAE 556 (1198)
Q Consensus 479 Ni~~~~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal~~~~~illlDe~ts~lD~~ 556 (1198)
|+.+... ..+.++....+. ....+++..++ ....||||||||++||||++.+|+++||||||+++|+.
T Consensus 69 nl~~~~~~~~~~~~~~~~~~~------~~~~l~~~~~~----~~~~lS~G~~qrv~la~al~~~p~llllDEP~~~lD~~ 138 (213)
T PRK15177 69 NARMMASLYGLDGDEFSHFCY------QLTQLEQCYTD----RVSEYSVTMKTHLAFAINLLLPCRLYIADGKLYTGDNA 138 (213)
T ss_pred HHHHHHHHcCCCHHHHHHHHH------HHhChhHHhhc----hHhhcCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHH
Confidence 9986422 122333222111 11223333333 34569999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHhCCCeEEEEecCcchhh-ccCEEEEEeCCEEEEecChhhHh
Q 000984 557 SEKVVQEALDRIMVNRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKGTHSKLV 608 (1198)
Q Consensus 557 ~~~~i~~~i~~~~~~~t~i~itH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~ 608 (1198)
+.+.+.+.+.+..+++|+|++||+++.+. .||+|++|++|++++.|+-++..
T Consensus 139 ~~~~~~~~l~~~~~~~~ii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 191 (213)
T PRK15177 139 TQLRMQAALACQLQQKGLIVLTHNPRLIKEHCHAFGVLLHGKITMCEDLAQAT 191 (213)
T ss_pred HHHHHHHHHHHHhhCCcEEEEECCHHHHHHhcCeeEEEECCeEEEeCCHHHHH
Confidence 99999988866666789999999999986 59999999999999999887764
|
|
| >COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.98 E-value=3e-32 Score=263.91 Aligned_cols=218 Identities=25% Similarity=0.456 Sum_probs=171.4
Q ss_pred EEEEeEEEEcCCC------CCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHH
Q 000984 384 IELRDVYFSYPAR------PNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQW 457 (1198)
Q Consensus 384 i~~~~v~~~y~~~------~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~ 457 (1198)
++++|++.++..+ ....+.+.+||+++.|+.+||+|.+|||||||.++|.|.++|++|+|.+||+++.--+-..
T Consensus 5 LeV~nLsKtF~~~~~lf~r~~~~AV~~vSFtL~~~QTlaiIG~NGSGKSTLakMlaGmi~PTsG~il~n~~~L~~~Dy~~ 84 (267)
T COG4167 5 LEVRNLSKTFRYRTGLFRRQTVEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPLHFGDYSF 84 (267)
T ss_pred hhhhhhhhhhhhhhhhhhhhhhhcccceEEEecCCcEEEEEccCCCcHhHHHHHHhcccCCCCceEEECCccccccchHh
Confidence 4556666544322 1234789999999999999999999999999999999999999999999999887666666
Q ss_pred HhcceEEEcCCCC-CCc----------ccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChH
Q 000984 458 IRKKIGLVSQEPV-LFT----------GSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGG 526 (1198)
Q Consensus 458 ~r~~i~~v~Q~~~-l~~----------~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgG 526 (1198)
..++|-.++|||. -|| +.++-|-.+ .+....+++.+.++.+++ +|+--+. ....||.|
T Consensus 85 R~k~IRMiFQDpnts~NPRl~iGqiLd~PL~l~T~~-~~~~R~~~i~~TL~~VGL------~Pdhan~----~~~~la~~ 153 (267)
T COG4167 85 RSKRIRMIFQDPNTSLNPRLRIGQILDFPLRLNTDL-EPEQRRKQIFETLRMVGL------LPDHANY----YPHMLAPG 153 (267)
T ss_pred hhhheeeeecCCccccChhhhhhhHhcchhhhcccC-ChHHHHHHHHHHHHHhcc------Ccccccc----chhhcCch
Confidence 5678999999994 233 222222221 122344566667776665 3432222 23579999
Q ss_pred HHHHHhHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh--CCCeEEEEecCcchhhc-cCEEEEEeCCEEEEecC
Q 000984 527 QKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIM--VNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGT 603 (1198)
Q Consensus 527 qkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~--~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~ 603 (1198)
||||+||||||.-+|+|+|.||+.++||.....++.+...++. .|-.-|.|+.++..+++ +|+|+||+.|+++|.|+
T Consensus 154 QKQRVaLARALIL~P~iIIaDeAl~~LD~smrsQl~NL~LeLQek~GiSyiYV~QhlG~iKHi~D~viVM~EG~vvE~G~ 233 (267)
T COG4167 154 QKQRVALARALILRPKIIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHIGMIKHISDQVLVMHEGEVVERGS 233 (267)
T ss_pred hHHHHHHHHHHhcCCcEEEehhhhhhccHHHHHHHHHHHHHHHHHhCceEEEEechhhHhhhhcccEEEEecCceeecCC
Confidence 9999999999999999999999999999998888877765543 36788999999999998 99999999999999999
Q ss_pred hhhHhcCCC
Q 000984 604 HSKLVEDPE 612 (1198)
Q Consensus 604 ~~~l~~~~~ 612 (1198)
+.++++.+.
T Consensus 234 t~~v~a~P~ 242 (267)
T COG4167 234 TADVLASPL 242 (267)
T ss_pred hhhhhcCCc
Confidence 999998754
|
|
| >PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=7e-32 Score=327.94 Aligned_cols=211 Identities=19% Similarity=0.336 Sum_probs=169.1
Q ss_pred cEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHH-HHhcc
Q 000984 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQ-WIRKK 461 (1198)
Q Consensus 383 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~-~~r~~ 461 (1198)
.|+++|+++.| +++|+|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++|.++...+.. .+++.
T Consensus 250 ~i~~~~l~~~~-----~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~ 324 (491)
T PRK10982 250 ILEVRNLTSLR-----QPSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKINNHNANEAINHG 324 (491)
T ss_pred EEEEeCccccc-----CcccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCcCCccEEEECCEECCCCCHHHHHHCC
Confidence 58999999874 2499999999999999999999999999999999999999999999999999776543 45778
Q ss_pred eEEEcCCCC---CCc-ccHHHH-----HhcCCCC---CCHHHHHHHHHHhcHHHHHHhCCCCcc-chhcCCCCCCChHHH
Q 000984 462 IGLVSQEPV---LFT-GSIKDN-----IAYGKDD---ATTEEIRVATELANAAKFIDKLPQGID-TLVGEHGTQLSGGQK 528 (1198)
Q Consensus 462 i~~v~Q~~~---l~~-~ti~~N-----i~~~~~~---~~~~~~~~~~~~~~~~~~i~~l~~g~~-t~v~~~g~~lSgGqk 528 (1198)
++|+||++. +|. .|+.+| +.+.... .+..+.. ..+.+.++.+ |+. -.......+||||||
T Consensus 325 i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~~LSgGq~ 397 (491)
T PRK10982 325 FALVTEERRSTGIYAYLDIGFNSLISNIRNYKNKVGLLDNSRMK-----SDTQWVIDSM--RVKTPGHRTQIGSLSGGNQ 397 (491)
T ss_pred CEEcCCchhhCCcccCCcHHHheehhhhhhhcccccccCcHHHH-----HHHHHHHHhc--CccCCCcccccccCCcHHH
Confidence 999999963 554 577666 4321111 1111111 1122344444 332 134666778999999
Q ss_pred HHHhHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh-CCCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChh
Q 000984 529 QRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHS 605 (1198)
Q Consensus 529 qri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~ 605 (1198)
||++||||++.+|+||||||||++||+.+.+.+.+.++++. +++|+|++||+++.+.. ||++++|++|+++..++.+
T Consensus 398 qrv~la~al~~~p~illLDEPt~gLD~~~~~~~~~~l~~l~~~~~tvi~vsHd~~~~~~~~d~v~~l~~g~i~~~~~~~ 476 (491)
T PRK10982 398 QKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKKDKGIIIISSEMPELLGITDRILVMSNGLVAGIVDTK 476 (491)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCcccChhHHHHHHHHHHHHHHCCCEEEEECCChHHHHhhCCEEEEEECCEEEEEEccc
Confidence 99999999999999999999999999999999999998764 47899999999998865 9999999999999877664
|
|
| >PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=4.1e-32 Score=330.18 Aligned_cols=208 Identities=27% Similarity=0.362 Sum_probs=164.9
Q ss_pred cEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCC-CCCeEEECCeecCC-cCHHHHhc
Q 000984 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDP-QAGEVLIDGINLKE-FQLQWIRK 460 (1198)
Q Consensus 383 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~-~~G~i~i~g~~~~~-~~~~~~r~ 460 (1198)
.|+++|++++|++ ..+|+|+||++++||+++|+||||||||||+++|+|+.+| ++|+|.++|.++.. ......|+
T Consensus 260 ~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 336 (490)
T PRK10938 260 RIVLNNGVVSYND---RPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQGYSNDLTLFGRRRGSGETIWDIKK 336 (490)
T ss_pred eEEEeceEEEECC---eeEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCcccCCeEEEecccCCCCCCHHHHHh
Confidence 5999999999963 3599999999999999999999999999999999998876 69999999987632 23345678
Q ss_pred ceEEEcCCCCCCc---ccHHHHHhcCCCC-------CCHHHHHHHHHHhcHHHHHHhCCCCccc-hhcCCCCCCChHHHH
Q 000984 461 KIGLVSQEPVLFT---GSIKDNIAYGKDD-------ATTEEIRVATELANAAKFIDKLPQGIDT-LVGEHGTQLSGGQKQ 529 (1198)
Q Consensus 461 ~i~~v~Q~~~l~~---~ti~~Ni~~~~~~-------~~~~~~~~~~~~~~~~~~i~~l~~g~~t-~v~~~g~~lSgGqkq 529 (1198)
+++|++|++.++. .++++++.++... ...+. .+ .+.+.++.+ |+.. ........|||||||
T Consensus 337 ~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-----~~~~~l~~~--~l~~~~~~~~~~~LSgGq~q 408 (490)
T PRK10938 337 HIGYVSSSLHLDYRVSTSVRNVILSGFFDSIGIYQAVSDRQ-QK-----LAQQWLDIL--GIDKRTADAPFHSLSWGQQR 408 (490)
T ss_pred hceEECHHHHhhcccCCcHHHHHHhccccccccccCCCHHH-HH-----HHHHHHHHc--CCchhhccCchhhCCHHHHH
Confidence 8999999986542 4777777543110 11111 10 112233333 4544 445566789999999
Q ss_pred HHhHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhC-C-CeEEEEecCcchhhc--cCEEEEEeCCEEEEe
Q 000984 530 RIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMV-N-RTTVIVAHRLSTVRN--ADMIAVIHRGKIVEK 601 (1198)
Q Consensus 530 ri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~-~-~t~i~itH~~~~~~~--~d~i~~l~~G~i~~~ 601 (1198)
|++||||++.+|++|||||||++||+.+.+.+.+.|+++.+ + .|+|++||+++.+.. ||++++|++|+|++.
T Consensus 409 rv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~L~~l~~~~~~tviivsHd~~~~~~~~~d~v~~l~~G~i~~~ 484 (490)
T PRK10938 409 LALIVRALVKHPTLLILDEPLQGLDPLNRQLVRRFVDVLISEGETQLLFVSHHAEDAPACITHRLEFVPDGDIYRY 484 (490)
T ss_pred HHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCcEEEEEecchhhhhhhhheeEEEecCCceEEe
Confidence 99999999999999999999999999999999999988754 3 469999999999864 799999999998764
|
|
| >COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.2e-32 Score=276.02 Aligned_cols=214 Identities=24% Similarity=0.456 Sum_probs=182.1
Q ss_pred cEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcce
Q 000984 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKI 462 (1198)
Q Consensus 383 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i 462 (1198)
.+++++|+.+|++ ..+++|+||.+++|+..+++|+||+||||.+++|+|+++|++|+|.++|.+++.. .+.+|
T Consensus 2 ~L~ie~vtK~Fg~---k~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle~~~G~I~~~g~~~~~~----~~~rI 74 (300)
T COG4152 2 ALEIEGVTKSFGD---KKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLSQE----IKNRI 74 (300)
T ss_pred ceEEecchhccCc---eeeecceeeeecCCeEEEeecCCCCCccchHHHHhccCCccCceEEEcCcchhhh----hhhhc
Confidence 4789999999963 5699999999999999999999999999999999999999999999999887653 35589
Q ss_pred EEEcCCCCCC-cccHHHHHhcCCC--CCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhhcc
Q 000984 463 GLVSQEPVLF-TGSIKDNIAYGKD--DATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILK 539 (1198)
Q Consensus 463 ~~v~Q~~~l~-~~ti~~Ni~~~~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal~~ 539 (1198)
||.|.+--|+ ..||.|-|.|... .....++.+ .+..+++++ +.--....+...||-|.+|+|-+--|+++
T Consensus 75 GyLPEERGLy~k~tv~dql~yla~LkGm~~~e~~~-----~~~~wLer~--~i~~~~~~kIk~LSKGnqQKIQfisaviH 147 (300)
T COG4152 75 GYLPEERGLYPKMTVEDQLKYLAELKGMPKAEIQK-----KLQAWLERL--EIVGKKTKKIKELSKGNQQKIQFISAVIH 147 (300)
T ss_pred ccChhhhccCccCcHHHHHHHHHHhcCCcHHHHHH-----HHHHHHHhc--cccccccchHHHhhhhhhHHHHHHHHHhc
Confidence 9999999999 5799999997421 223344333 234456665 23333455667899999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHhHHHHHHHHHHHh-CCCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChhhHhcC
Q 000984 540 DPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVED 610 (1198)
Q Consensus 540 ~~~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 610 (1198)
+|+++|||||+|+|||-+.+.+.+.|.++. ++.|+|+.|||++.+.. ||+++.|++|+.|-.|+.++..+.
T Consensus 148 ePeLlILDEPFSGLDPVN~elLk~~I~~lk~~GatIifSsH~Me~vEeLCD~llmL~kG~~V~~G~v~~ir~~ 220 (300)
T COG4152 148 EPELLILDEPFSGLDPVNVELLKDAIFELKEEGATIIFSSHRMEHVEELCDRLLMLKKGQTVLYGTVEDIRRS 220 (300)
T ss_pred CCCEEEecCCccCCChhhHHHHHHHHHHHHhcCCEEEEecchHHHHHHHhhhhheecCCceEEeccHHHHHHh
Confidence 999999999999999999999999998875 58999999999999976 999999999999999999888653
|
|
| >PLN03073 ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.5e-31 Score=330.09 Aligned_cols=200 Identities=27% Similarity=0.403 Sum_probs=161.3
Q ss_pred ccEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcc
Q 000984 382 GDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKK 461 (1198)
Q Consensus 382 g~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~ 461 (1198)
..++++|++++|+. .+++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+++ +.+
T Consensus 507 ~~L~~~~ls~~y~~--~~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p~~G~I~~~~-----------~~~ 573 (718)
T PLN03073 507 PIISFSDASFGYPG--GPLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTVFRSA-----------KVR 573 (718)
T ss_pred ceEEEEeeEEEeCC--CCeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCceEEECC-----------cee
Confidence 35999999999963 23599999999999999999999999999999999999999999999876 347
Q ss_pred eEEEcCCCCCCcccHHHHHhcC----CCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhh
Q 000984 462 IGLVSQEPVLFTGSIKDNIAYG----KDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAI 537 (1198)
Q Consensus 462 i~~v~Q~~~l~~~ti~~Ni~~~----~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal 537 (1198)
|+|++|++. ...++.+|..+. .+...++++..+++..++.+ .........||||||||++||||+
T Consensus 574 igyv~Q~~~-~~l~~~~~~~~~~~~~~~~~~~~~i~~~L~~~gl~~----------~~~~~~~~~LSgGqkqRvaLAraL 642 (718)
T PLN03073 574 MAVFSQHHV-DGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTG----------NLALQPMYTLSGGQKSRVAFAKIT 642 (718)
T ss_pred EEEEecccc-ccCCcchhHHHHHHHhcCCCCHHHHHHHHHHCCCCh----------HHhcCCccccCHHHHHHHHHHHHH
Confidence 999999873 223455553211 12234455555555444321 123445678999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhCCCeEEEEecCcchhhc-cCEEEEEeCCEEE-EecChhhH
Q 000984 538 LKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRN-ADMIAVIHRGKIV-EKGTHSKL 607 (1198)
Q Consensus 538 ~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~-~~g~~~~l 607 (1198)
+.+|++|||||||++||+.+...+.+.+.+. +.|+|+|||+++.+.. ||+|++|++|+++ ..|++++.
T Consensus 643 ~~~p~lLLLDEPT~~LD~~s~~~l~~~L~~~--~gtvIivSHd~~~i~~~~drv~~l~~G~i~~~~g~~~~~ 712 (718)
T PLN03073 643 FKKPHILLLDEPSNHLDLDAVEALIQGLVLF--QGGVLMVSHDEHLISGSVDELWVVSEGKVTPFHGTFHDY 712 (718)
T ss_pred hcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc--CCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCCHHHH
Confidence 9999999999999999999988888888765 3599999999999875 9999999999998 67877664
|
|
| >COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.2e-31 Score=251.58 Aligned_cols=195 Identities=28% Similarity=0.444 Sum_probs=157.3
Q ss_pred cEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCC---CCeEEECCeecCCcCHHHHh
Q 000984 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQ---AGEVLIDGINLKEFQLQWIR 459 (1198)
Q Consensus 383 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~---~G~i~i~g~~~~~~~~~~~r 459 (1198)
.+.++||+.+-|. .-.|.|+|++|.+||++-|.||||||||||+.-+.|.+.+. +|++.+|++++..++.+ +
T Consensus 2 ~l~l~nvsl~l~g---~cLLa~~n~Tia~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l~~lPa~--q 76 (213)
T COG4136 2 MLCLKNVSLRLPG---SCLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAA--Q 76 (213)
T ss_pred ceeeeeeeecCCC---ceEEEeeeEEecCCcEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCeeccccchh--h
Confidence 4678999988764 45899999999999999999999999999999999999884 79999999999888766 5
Q ss_pred cceEEEcCCCCCCc-ccHHHHHhcCCCCCCH-----HHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhH
Q 000984 460 KKIGLVSQEPVLFT-GSIKDNIAYGKDDATT-----EEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAI 533 (1198)
Q Consensus 460 ~~i~~v~Q~~~l~~-~ti~~Ni~~~~~~~~~-----~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~l 533 (1198)
+++|+.+||||||. -+|-+||.|..|..-. .....+++.. |++-.-.....+||||||.|++|
T Consensus 77 Rq~GiLFQD~lLFphlsVg~Nl~fAlp~~~KG~aRr~~a~aAL~~~-----------gL~g~f~~dP~tlSGGQrARvaL 145 (213)
T COG4136 77 RQIGILFQDALLFPHLSVGQNLLFALPATLKGNARRNAANAALERS-----------GLDGAFHQDPATLSGGQRARVAL 145 (213)
T ss_pred hheeeeecccccccccccccceEEecCcccccHHHHhhHHHHHHHh-----------ccchhhhcChhhcCcchHHHHHH
Confidence 79999999999995 6999999998764322 2233344444 44444455567899999999999
Q ss_pred HHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHH-H-hCCCeEEEEecCcchhhccCEEEEE
Q 000984 534 ARAILKDPRILLLDEATSALDAESEKVVQEALDR-I-MVNRTTVIVAHRLSTVRNADMIAVI 593 (1198)
Q Consensus 534 ARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~-~-~~~~t~i~itH~~~~~~~~d~i~~l 593 (1198)
-|+|+..|+.++||||+|.||..-...+.+-+-. . ..+--+|+|||+.+.++.-.||+-|
T Consensus 146 ~R~Lla~Pk~lLLDEPFS~LD~ALR~qfR~wVFs~~r~agiPtv~VTHD~~DvpagsrVie~ 207 (213)
T COG4136 146 LRALLAQPKALLLDEPFSRLDVALRDQFRQWVFSEVRAAGIPTVQVTHDLQDVPAGSRVIEM 207 (213)
T ss_pred HHHHHhCcceeeeCCchhHHHHHHHHHHHHHHHHHHHhcCCCeEEEecccccCCCCCeeeee
Confidence 9999999999999999999999876666554422 1 2367899999999988755555443
|
|
| >cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.4e-31 Score=275.87 Aligned_cols=145 Identities=28% Similarity=0.381 Sum_probs=131.1
Q ss_pred EeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcceEEEc
Q 000984 387 RDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVS 466 (1198)
Q Consensus 387 ~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~~v~ 466 (1198)
.|++++|++ .+++++ +|++++||+++|+||||||||||+++|+|+++|++|+|.++|. .++|++
T Consensus 4 ~~l~~~~~~---~~~l~~-~~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~------------~i~~~~ 67 (177)
T cd03222 4 PDCVKRYGV---FFLLVE-LGVVKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGI------------TPVYKP 67 (177)
T ss_pred CCeEEEECC---EEEEcc-CcEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCE------------EEEEEc
Confidence 578899953 468888 4999999999999999999999999999999999999999995 489999
Q ss_pred CCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhhccCCCEEEE
Q 000984 467 QEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLL 546 (1198)
Q Consensus 467 Q~~~l~~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal~~~~~illl 546 (1198)
|++. ||||||||++||||++.+|+++||
T Consensus 68 q~~~----------------------------------------------------LSgGq~qrv~laral~~~p~lllL 95 (177)
T cd03222 68 QYID----------------------------------------------------LSGGELQRVAIAAALLRNATFYLF 95 (177)
T ss_pred ccCC----------------------------------------------------CCHHHHHHHHHHHHHhcCCCEEEE
Confidence 9763 999999999999999999999999
Q ss_pred eCCCCCCCHHhHHHHHHHHHHHhC-C-CeEEEEecCcchhhc-cCEEEEEeCCEEE
Q 000984 547 DEATSALDAESEKVVQEALDRIMV-N-RTTVIVAHRLSTVRN-ADMIAVIHRGKIV 599 (1198)
Q Consensus 547 De~ts~lD~~~~~~i~~~i~~~~~-~-~t~i~itH~~~~~~~-~d~i~~l~~G~i~ 599 (1198)
||||++||+++.+.+.+.++++.+ + +|+|++||+++.+.. ||++++|+++-.+
T Consensus 96 DEPts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~~~~~ 151 (177)
T cd03222 96 DEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDLAVLDYLSDRIHVFEGEPGV 151 (177)
T ss_pred ECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHhCCEEEEEcCCCcc
Confidence 999999999999999999988753 3 899999999999875 9999999987554
|
RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. |
| >cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.9e-31 Score=271.98 Aligned_cols=154 Identities=41% Similarity=0.689 Sum_probs=143.6
Q ss_pred EEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcceEEE
Q 000984 386 LRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLV 465 (1198)
Q Consensus 386 ~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~~v 465 (1198)
++|+++.|+. .++++++||++++|+.++|+|+||||||||+++|.|+++|.+|+|.++|.++.+.....+++.++|+
T Consensus 2 ~~~~~~~~~~---~~~l~~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~ 78 (157)
T cd00267 2 IENLSFRYGG---RTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLPLEELRRRIGYV 78 (157)
T ss_pred eEEEEEEeCC---eeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccCCHHHHHhceEEE
Confidence 6899999964 3699999999999999999999999999999999999999999999999999887777788899999
Q ss_pred cCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhhccCCCEEE
Q 000984 466 SQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILL 545 (1198)
Q Consensus 466 ~Q~~~l~~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal~~~~~ill 545 (1198)
+| ||||||||++||||++.+|+++|
T Consensus 79 ~q-------------------------------------------------------lS~G~~~r~~l~~~l~~~~~i~i 103 (157)
T cd00267 79 PQ-------------------------------------------------------LSGGQRQRVALARALLLNPDLLL 103 (157)
T ss_pred ee-------------------------------------------------------CCHHHHHHHHHHHHHhcCCCEEE
Confidence 99 99999999999999999999999
Q ss_pred EeCCCCCCCHHhHHHHHHHHHHHhC-CCeEEEEecCcchhhc-cCEEEEEeCCE
Q 000984 546 LDEATSALDAESEKVVQEALDRIMV-NRTTVIVAHRLSTVRN-ADMIAVIHRGK 597 (1198)
Q Consensus 546 lDe~ts~lD~~~~~~i~~~i~~~~~-~~t~i~itH~~~~~~~-~d~i~~l~~G~ 597 (1198)
|||||++||.++...+.+.+.+..+ ++|++++||+++.+.. ||+++++++|+
T Consensus 104 lDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~g~ 157 (157)
T cd00267 104 LDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPELAELAADRVIVLKDGK 157 (157)
T ss_pred EeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCcC
Confidence 9999999999999999999987654 4899999999999988 69999999874
|
The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK10636 putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.1e-31 Score=329.14 Aligned_cols=199 Identities=27% Similarity=0.413 Sum_probs=163.2
Q ss_pred cEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcce
Q 000984 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKI 462 (1198)
Q Consensus 383 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i 462 (1198)
.|+++|++++|++ +++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+++. .++
T Consensus 312 ~l~~~~l~~~y~~---~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-----------~~i 377 (638)
T PRK10636 312 LLKMEKVSAGYGD---RIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAKG-----------IKL 377 (638)
T ss_pred eEEEEeeEEEeCC---eeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCC-----------EEE
Confidence 5999999999963 46999999999999999999999999999999999999999999999741 269
Q ss_pred EEEcCCC--CCC-cccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCcc-chhcCCCCCCChHHHHHHhHHHhhc
Q 000984 463 GLVSQEP--VLF-TGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGID-TLVGEHGTQLSGGQKQRIAIARAIL 538 (1198)
Q Consensus 463 ~~v~Q~~--~l~-~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~-t~v~~~g~~lSgGqkqri~lARal~ 538 (1198)
+|++|++ .+. ..|+.+++....+....+++...++. + |+. .........||||||||++||||++
T Consensus 378 gy~~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~---------~--~l~~~~~~~~~~~LSgGekqRl~La~~l~ 446 (638)
T PRK10636 378 GYFAQHQLEFLRADESPLQHLARLAPQELEQKLRDYLGG---------F--GFQGDKVTEETRRFSGGEKARLVLALIVW 446 (638)
T ss_pred EEecCcchhhCCccchHHHHHHHhCchhhHHHHHHHHHH---------c--CCChhHhcCchhhCCHHHHHHHHHHHHHh
Confidence 9999985 343 34888887521222222333333333 3 332 2344556789999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhCCCeEEEEecCcchhhc-cCEEEEEeCCEEE-EecChhhHh
Q 000984 539 KDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRN-ADMIAVIHRGKIV-EKGTHSKLV 608 (1198)
Q Consensus 539 ~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~-~~g~~~~l~ 608 (1198)
++|++|||||||++||+.+...+.+.|.++ +.|+|+|||+++++.. ||+|++|++|+++ ..|++++..
T Consensus 447 ~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~--~gtvi~vSHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 516 (638)
T PRK10636 447 QRPNLLLLDEPTNHLDLDMRQALTEALIDF--EGALVVVSHDRHLLRSTTDDLYLVHDGKVEPFDGDLEDYQ 516 (638)
T ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHHHHHc--CCeEEEEeCCHHHHHHhCCEEEEEECCEEEEcCCCHHHHH
Confidence 999999999999999999999999999886 3599999999999875 9999999999997 788887763
|
|
| >PRK11819 putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.7e-31 Score=325.24 Aligned_cols=202 Identities=24% Similarity=0.381 Sum_probs=164.9
Q ss_pred ccEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcc
Q 000984 382 GDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKK 461 (1198)
Q Consensus 382 g~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~ 461 (1198)
..|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+++ + .+
T Consensus 323 ~~l~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~-~----------~~ 388 (556)
T PRK11819 323 KVIEAENLSKSFGD---RLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKIGE-T----------VK 388 (556)
T ss_pred eEEEEEeEEEEECC---eeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECC-c----------eE
Confidence 35999999999963 3599999999999999999999999999999999999999999999954 2 16
Q ss_pred eEEEcCCC-CCC-cccHHHHHhcCCCCCC----HHHHHHHHHHhcHHHHHHhCCCCccc-hhcCCCCCCChHHHHHHhHH
Q 000984 462 IGLVSQEP-VLF-TGSIKDNIAYGKDDAT----TEEIRVATELANAAKFIDKLPQGIDT-LVGEHGTQLSGGQKQRIAIA 534 (1198)
Q Consensus 462 i~~v~Q~~-~l~-~~ti~~Ni~~~~~~~~----~~~~~~~~~~~~~~~~i~~l~~g~~t-~v~~~g~~lSgGqkqri~lA 534 (1198)
|+|+||++ .++ ..|+++|+.++..... +.+... .+..+ |+.. ........||||||||++||
T Consensus 389 i~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~---------~l~~~--~l~~~~~~~~~~~LSgG~~qrv~la 457 (556)
T PRK11819 389 LAYVDQSRDALDPNKTVWEEISGGLDIIKVGNREIPSRA---------YVGRF--NFKGGDQQKKVGVLSGGERNRLHLA 457 (556)
T ss_pred EEEEeCchhhcCCCCCHHHHHHhhcccccccccHHHHHH---------HHHhC--CCChhHhcCchhhCCHHHHHHHHHH
Confidence 99999997 555 4599999987532111 111111 23333 4432 24556678999999999999
Q ss_pred HhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhCCCeEEEEecCcchhhc-cCEEEEEeC-CEEE-EecChhhHhcC
Q 000984 535 RAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRN-ADMIAVIHR-GKIV-EKGTHSKLVED 610 (1198)
Q Consensus 535 Ral~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~-~d~i~~l~~-G~i~-~~g~~~~l~~~ 610 (1198)
||++.+|++|||||||++||+.+...+.+.|.++ + .|+|+|||+++.+.. ||+|++|++ |++. ..|+++++.++
T Consensus 458 ~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~-~-~tvi~vtHd~~~~~~~~d~i~~l~~~g~~~~~~g~~~~~~~~ 534 (556)
T PRK11819 458 KTLKQGGNVLLLDEPTNDLDVETLRALEEALLEF-P-GCAVVISHDRWFLDRIATHILAFEGDSQVEWFEGNFQEYEED 534 (556)
T ss_pred HHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhC-C-CeEEEEECCHHHHHHhCCEEEEEECCCeEEEecCCHHHHHHH
Confidence 9999999999999999999999999999999886 3 489999999998875 999999986 7876 47787776543
|
|
| >TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.8e-31 Score=324.34 Aligned_cols=200 Identities=24% Similarity=0.375 Sum_probs=163.9
Q ss_pred cEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcce
Q 000984 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKI 462 (1198)
Q Consensus 383 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i 462 (1198)
.++++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+++ + .+|
T Consensus 322 ~l~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~~-~----------~~i 387 (552)
T TIGR03719 322 VIEAENLSKGFGD---KLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIKIGE-T----------VKL 387 (552)
T ss_pred EEEEeeEEEEECC---eeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEECC-c----------eEE
Confidence 5999999999963 3599999999999999999999999999999999999999999999954 2 169
Q ss_pred EEEcCCC-CCC-cccHHHHHhcCCCCC--C--HHHHHHHHHHhcHHHHHHhCCCCccc-hhcCCCCCCChHHHHHHhHHH
Q 000984 463 GLVSQEP-VLF-TGSIKDNIAYGKDDA--T--TEEIRVATELANAAKFIDKLPQGIDT-LVGEHGTQLSGGQKQRIAIAR 535 (1198)
Q Consensus 463 ~~v~Q~~-~l~-~~ti~~Ni~~~~~~~--~--~~~~~~~~~~~~~~~~i~~l~~g~~t-~v~~~g~~lSgGqkqri~lAR 535 (1198)
+|++|++ .++ ..|++||+.++.... . +.+.. +.+..+ |+.. ........||||||||++|||
T Consensus 388 ~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~---------~~l~~~--~l~~~~~~~~~~~LSgGe~qrv~la~ 456 (552)
T TIGR03719 388 AYVDQSRDALDPNKTVWEEISGGLDIIQLGKREVPSR---------AYVGRF--NFKGSDQQKKVGQLSGGERNRVHLAK 456 (552)
T ss_pred EEEeCCccccCCCCcHHHHHHhhccccccCcchHHHH---------HHHHhC--CCChhHhcCchhhCCHHHHHHHHHHH
Confidence 9999997 355 469999999764311 1 11111 233333 4432 245566789999999999999
Q ss_pred hhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhCCCeEEEEecCcchhhc-cCEEEEEeC-CEEE-EecChhhHhc
Q 000984 536 AILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRN-ADMIAVIHR-GKIV-EKGTHSKLVE 609 (1198)
Q Consensus 536 al~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~-~d~i~~l~~-G~i~-~~g~~~~l~~ 609 (1198)
|++.+|++|||||||++||+.+...+.+.|+++. .|+|+|||+++.+.. ||+|++|++ |++. ..|+++++.+
T Consensus 457 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~--~~viivsHd~~~~~~~~d~i~~l~~~~~~~~~~g~~~~~~~ 531 (552)
T TIGR03719 457 TLKSGGNVLLLDEPTNDLDVETLRALEEALLEFA--GCAVVISHDRWFLDRIATHILAFEGDSHVEWFEGNYSEYEE 531 (552)
T ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHCC--CeEEEEeCCHHHHHHhCCEEEEEECCCeEEEeCCCHHHHHH
Confidence 9999999999999999999999999999998863 589999999999875 999999987 5876 5577766543
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. |
| >KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.7e-30 Score=289.93 Aligned_cols=215 Identities=26% Similarity=0.367 Sum_probs=143.5
Q ss_pred ccEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECC--eecCCcCHHHHh
Q 000984 382 GDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDG--INLKEFQLQWIR 459 (1198)
Q Consensus 382 g~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g--~~~~~~~~~~~r 459 (1198)
..|.++|++++|+. .++++|..|++++|+++||+|++||||||+|++|.|--.|..-++.+-- .++..-....+.
T Consensus 74 ~dvk~~sls~s~~g---~~l~kd~~~El~~g~rygLiG~nG~Gkst~L~~i~~~e~P~p~~~d~y~ls~e~~ps~~~av~ 150 (614)
T KOG0927|consen 74 RDVKIESLSLSFHG---VELIKDVTLELNRGRRYGLIGPNGSGKSTFLRAIAGREVPIPEHIDFYLLSREIEPSEKQAVQ 150 (614)
T ss_pred ccceeeeeeeccCC---ceeeeeeeEEecCCceEEEEcCCCCcHhHHHHHHhcCCCCCCcccchhhhcccCCCchHHHHH
Confidence 35899999999964 4699999999999999999999999999999999997777554442210 011000000000
Q ss_pred cceEEEcCCCCCCcccHH-------HHHhcCCCCCCHH---HHHHHHHHhc-------HHHHHHhCCCCc-cchhcCCCC
Q 000984 460 KKIGLVSQEPVLFTGSIK-------DNIAYGKDDATTE---EIRVATELAN-------AAKFIDKLPQGI-DTLVGEHGT 521 (1198)
Q Consensus 460 ~~i~~v~Q~~~l~~~ti~-------~Ni~~~~~~~~~~---~~~~~~~~~~-------~~~~i~~l~~g~-~t~v~~~g~ 521 (1198)
.- ..+....+ |++.-..++...+ .+++-+...+ +...+..+ |. .......-.
T Consensus 151 ~v--------~~~~~~e~~rle~~~E~l~~~~d~~~~~~l~~~~~r~~~~d~~~~~~k~~~il~gl--gf~~~m~~k~~~ 220 (614)
T KOG0927|consen 151 AV--------VMETDHERKRLEYLAEDLAQACDDKEKDELDELYERLDEMDNDTFEAKAAKILHGL--GFLSEMQDKKVK 220 (614)
T ss_pred HH--------hhhhHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHhhCchhHHHHHHHHHHhc--CCCHhHHHHHhh
Confidence 00 00111111 1111110110111 1111111100 11111111 22 233455667
Q ss_pred CCChHHHHHHhHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhCCCeEEEEecCcchhhc-cCEEEEEeCCE-EE
Q 000984 522 QLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRN-ADMIAVIHRGK-IV 599 (1198)
Q Consensus 522 ~lSgGqkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~-~d~i~~l~~G~-i~ 599 (1198)
+||||||-|++|||||+.+|++|+|||||++||.++...+.+.+.+.... ++++++|.-+++.. |.+|+.|++++ +.
T Consensus 221 ~~SgGwrmR~aLAr~Lf~kP~LLLLDEPtnhLDleA~~wLee~L~k~d~~-~lVi~sh~QDfln~vCT~Ii~l~~kkl~~ 299 (614)
T KOG0927|consen 221 DLSGGWRMRAALARALFQKPDLLLLDEPTNHLDLEAIVWLEEYLAKYDRI-ILVIVSHSQDFLNGVCTNIIHLDNKKLIY 299 (614)
T ss_pred ccCchHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHhccCc-eEEEEecchhhhhhHhhhhheecccceee
Confidence 89999999999999999999999999999999999999999988776322 89999999999987 99999999999 66
Q ss_pred EecChhhHhcC
Q 000984 600 EKGTHSKLVED 610 (1198)
Q Consensus 600 ~~g~~~~l~~~ 610 (1198)
+.|+++.+...
T Consensus 300 y~Gnydqy~~t 310 (614)
T KOG0927|consen 300 YEGNYDQYVKT 310 (614)
T ss_pred ecCCHHHHhhH
Confidence 88888877643
|
|
| >COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.4e-31 Score=269.99 Aligned_cols=211 Identities=29% Similarity=0.449 Sum_probs=175.4
Q ss_pred ccEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCH-HHHhc
Q 000984 382 GDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQL-QWIRK 460 (1198)
Q Consensus 382 g~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~-~~~r~ 460 (1198)
.-|+++||++.|. ++++|+|||++|++||.-+|+||||||||||++++.|+++|++|.+.+-|+.....+. .++|+
T Consensus 30 ~li~l~~v~v~r~---gk~iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~pssg~~~~~G~~~G~~~~~~elrk 106 (257)
T COG1119 30 PLIELKNVSVRRN---GKKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLLGRRFGKGETIFELRK 106 (257)
T ss_pred ceEEecceEEEEC---CEeeccccceeecCCCcEEEECCCCCCHHHHHHHHhcccCCCCCceeeeeeeccCCcchHHHHH
Confidence 3599999999996 4579999999999999999999999999999999999999999999999999988877 99999
Q ss_pred ceEEEcCCCC---CCcccHHHHHhcCC------C--CCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHH
Q 000984 461 KIGLVSQEPV---LFTGSIKDNIAYGK------D--DATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQ 529 (1198)
Q Consensus 461 ~i~~v~Q~~~---l~~~ti~~Ni~~~~------~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkq 529 (1198)
+||+|+-+-. .-+.+++|-++-|. . .+++++..++... ++.+ |.....++.-..||-||||
T Consensus 107 ~IG~vS~~L~~~~~~~~~v~dvVlSg~~~siG~y~~~~~~~~~~~a~~l------le~~--g~~~la~r~~~~LS~Ge~r 178 (257)
T COG1119 107 RIGLVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWL------LELL--GAKHLADRPFGSLSQGEQR 178 (257)
T ss_pred HhCccCHHHHhhcccccccceeeeecccccccccccCCCHHHHHHHHHH------HHHc--chhhhccCchhhcCHhHHH
Confidence 9999986532 22557777776432 1 2344444333222 2222 5555666777889999999
Q ss_pred HHhHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhC---CCeEEEEecCcchhhc-cCEEEEEeCCEEEEecC
Q 000984 530 RIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMV---NRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGT 603 (1198)
Q Consensus 530 ri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~---~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~ 603 (1198)
|+-|||||..+|++||||||+++||....+.+.+.+.++.. ..++|+|||+.+.+.. .++++.+++|+++.+|.
T Consensus 179 rvLiaRALv~~P~LLiLDEP~~GLDl~~re~ll~~l~~~~~~~~~~~ll~VtHh~eEi~~~~th~lll~~g~v~~~g~ 256 (257)
T COG1119 179 RVLIARALVKDPELLILDEPAQGLDLIAREQLLNRLEELAASPGAPALLFVTHHAEEIPPCFTHRLLLKEGEVVAQGK 256 (257)
T ss_pred HHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHhcCCCCceEEEEEcchhhcccccceEEEeeCCceeeccc
Confidence 99999999999999999999999999999888888888753 4789999999998865 69999999999998774
|
|
| >PRK11147 ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.9e-31 Score=327.15 Aligned_cols=198 Identities=27% Similarity=0.444 Sum_probs=161.8
Q ss_pred cEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcce
Q 000984 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKI 462 (1198)
Q Consensus 383 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i 462 (1198)
.|+++|++++|++ +++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+ |.++ +|
T Consensus 319 ~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~-~~~~----------~i 384 (635)
T PRK11147 319 VFEMENVNYQIDG---KQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHC-GTKL----------EV 384 (635)
T ss_pred eEEEeeeEEEECC---eEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEE-CCCc----------EE
Confidence 5899999999963 46999999999999999999999999999999999999999999998 4322 69
Q ss_pred EEEcCCC-CCCc-ccHHHHHhcCCCCC--C--HHHHHHHHHHhcHHHHHHhCCCCcc-chhcCCCCCCChHHHHHHhHHH
Q 000984 463 GLVSQEP-VLFT-GSIKDNIAYGKDDA--T--TEEIRVATELANAAKFIDKLPQGID-TLVGEHGTQLSGGQKQRIAIAR 535 (1198)
Q Consensus 463 ~~v~Q~~-~l~~-~ti~~Ni~~~~~~~--~--~~~~~~~~~~~~~~~~i~~l~~g~~-t~v~~~g~~lSgGqkqri~lAR 535 (1198)
+|++|++ .++. .|+.+|+.++.+.. . ..++. +.+..+ |+. .........||||||||++|||
T Consensus 385 ~y~~q~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~---------~~l~~~--~l~~~~~~~~~~~LSgGekqRl~la~ 453 (635)
T PRK11147 385 AYFDQHRAELDPEKTVMDNLAEGKQEVMVNGRPRHVL---------GYLQDF--LFHPKRAMTPVKALSGGERNRLLLAR 453 (635)
T ss_pred EEEeCcccccCCCCCHHHHHHhhcccccccchHHHHH---------HHHHhc--CCCHHHHhChhhhCCHHHHHHHHHHH
Confidence 9999986 3554 59999998754321 1 11222 223333 332 1234455689999999999999
Q ss_pred hhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhCCCeEEEEecCcchhhc-cCEEEEEe-CCEEEE-ecChhhH
Q 000984 536 AILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRN-ADMIAVIH-RGKIVE-KGTHSKL 607 (1198)
Q Consensus 536 al~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~-~d~i~~l~-~G~i~~-~g~~~~l 607 (1198)
|++.+|++|||||||++||+.+...+.+.++++ +.|+|+|||+.+.+.. ||+|++|+ +|++.+ .|+|++.
T Consensus 454 al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vSHd~~~~~~~~d~i~~l~~~g~i~~~~g~y~~y 526 (635)
T PRK11147 454 LFLKPSNLLILDEPTNDLDVETLELLEELLDSY--QGTVLLVSHDRQFVDNTVTECWIFEGNGKIGRYVGGYHDA 526 (635)
T ss_pred HHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhC--CCeEEEEECCHHHHHHhcCEEEEEeCCCeEEEccCCHHHH
Confidence 999999999999999999999999999999875 4699999999999865 99999998 899875 5676665
|
|
| >cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.9e-31 Score=270.43 Aligned_cols=155 Identities=24% Similarity=0.419 Sum_probs=128.9
Q ss_pred CccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcceEEEcCCCCCCcccHHH
Q 000984 399 EQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKD 478 (1198)
Q Consensus 399 ~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~ 478 (1198)
.++|+|+||++++|++++|+||||||||||++++++ .+|++.++|.. ... .+.+++|++|
T Consensus 8 ~~~l~~isl~i~~G~~~~l~G~nG~GKSTLl~~il~----~~G~v~~~~~~-~~~----~~~~~~~~~q----------- 67 (176)
T cd03238 8 VHNLQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGLY----ASGKARLISFL-PKF----SRNKLIFIDQ----------- 67 (176)
T ss_pred eeeecceEEEEcCCCEEEEECCCCCCHHHHHHHHhh----cCCcEEECCcc-ccc----ccccEEEEhH-----------
Confidence 568999999999999999999999999999999963 68999998752 111 1345888877
Q ss_pred HHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccc-hhcCCCCCCChHHHHHHhHHHhhccC--CCEEEEeCCCCCCCH
Q 000984 479 NIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDT-LVGEHGTQLSGGQKQRIAIARAILKD--PRILLLDEATSALDA 555 (1198)
Q Consensus 479 Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t-~v~~~g~~lSgGqkqri~lARal~~~--~~illlDe~ts~lD~ 555 (1198)
. +.++.+ |+.. ..+....+||||||||++||||++++ |+++||||||++||+
T Consensus 68 --------------~---------~~l~~~--~L~~~~~~~~~~~LSgGq~qrl~laral~~~~~p~llLlDEPt~~LD~ 122 (176)
T cd03238 68 --------------L---------QFLIDV--GLGYLTLGQKLSTLSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQ 122 (176)
T ss_pred --------------H---------HHHHHc--CCCccccCCCcCcCCHHHHHHHHHHHHHhhCCCCCEEEEeCCcccCCH
Confidence 1 123333 3332 25667789999999999999999999 999999999999999
Q ss_pred HhHHHHHHHHHHHh-CCCeEEEEecCcchhhccCEEEEEeCCEE
Q 000984 556 ESEKVVQEALDRIM-VNRTTVIVAHRLSTVRNADMIAVIHRGKI 598 (1198)
Q Consensus 556 ~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~~~d~i~~l~~G~i 598 (1198)
++.+.+.+.++++. .++|+|++||+++.+..||++++|++|+.
T Consensus 123 ~~~~~l~~~l~~~~~~g~tvIivSH~~~~~~~~d~i~~l~~g~~ 166 (176)
T cd03238 123 QDINQLLEVIKGLIDLGNTVILIEHNLDVLSSADWIIDFGPGSG 166 (176)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhCCEEEEECCCCC
Confidence 99999999998875 47999999999999888999999976543
|
Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. |
| >PLN03140 ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.6e-30 Score=343.42 Aligned_cols=214 Identities=24% Similarity=0.403 Sum_probs=175.0
Q ss_pred cEEEEeEEEEcCCC----------CCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCC--CCCeEEECCeec
Q 000984 383 DIELRDVYFSYPAR----------PNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDP--QAGEVLIDGINL 450 (1198)
Q Consensus 383 ~i~~~~v~~~y~~~----------~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~--~~G~i~i~g~~~ 450 (1198)
.++++||++..+.. ....+|+|+|++++||++++|+||||||||||+++|+|..++ .+|+|.+||.+.
T Consensus 867 ~~~~~~v~y~v~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~~~ 946 (1470)
T PLN03140 867 AMSFDDVNYFVDMPAEMKEQGVTEDRLQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPK 946 (1470)
T ss_pred eEEEEEEEEEEccCccccccccCcCCceEeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCCCcccceEEECCccC
Confidence 68999999998532 123699999999999999999999999999999999999763 689999999876
Q ss_pred CCcCHHHHhcceEEEcCCCCCC-cccHHHHHhcCC----C-CCCHH----HHHHHHHHhcHHHHHHhCCCCccchhcCCC
Q 000984 451 KEFQLQWIRKKIGLVSQEPVLF-TGSIKDNIAYGK----D-DATTE----EIRVATELANAAKFIDKLPQGIDTLVGEHG 520 (1198)
Q Consensus 451 ~~~~~~~~r~~i~~v~Q~~~l~-~~ti~~Ni~~~~----~-~~~~~----~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g 520 (1198)
. ...+|+.+|||+|++.++ ..||+||+.|+. + ..+.+ .+.++++..++.+ -.++.+|..+
T Consensus 947 ~---~~~~~~~igyv~Q~d~~~~~lTV~E~L~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~~-------~~~~~vg~~~ 1016 (1470)
T PLN03140 947 K---QETFARISGYCEQNDIHSPQVTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDN-------LKDAIVGLPG 1016 (1470)
T ss_pred C---hHHhhhheEEEccccccCCCCcHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHCCChh-------HhCCccCCCC
Confidence 4 245677899999998776 469999998742 1 12222 2344555544433 2467777544
Q ss_pred -CCCChHHHHHHhHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh-CCCeEEEEecCcch--hhccCEEEEEeC-
Q 000984 521 -TQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLST--VRNADMIAVIHR- 595 (1198)
Q Consensus 521 -~~lSgGqkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~--~~~~d~i~~l~~- 595 (1198)
..||||||||++|||||+.+|++|+||||||+||+.+...+.+.++++. +++|+|+++|+++. ...+|++++|++
T Consensus 1017 ~~~LSgGerkRvsIa~aL~~~P~lL~LDEPTsgLD~~~a~~v~~~L~~l~~~g~tVI~t~Hq~~~~i~~~~D~vllL~~g 1096 (1470)
T PLN03140 1017 VTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRG 1096 (1470)
T ss_pred CCCcCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHhCCEEEEEcCC
Confidence 5799999999999999999999999999999999999999999998875 47899999999984 466999999996
Q ss_pred CEEEEecChhh
Q 000984 596 GKIVEKGTHSK 606 (1198)
Q Consensus 596 G~i~~~g~~~~ 606 (1198)
|++++.|+..+
T Consensus 1097 G~~v~~G~~~~ 1107 (1470)
T PLN03140 1097 GQVIYSGPLGR 1107 (1470)
T ss_pred CEEEEECCccc
Confidence 89999998753
|
|
| >PRK13409 putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-30 Score=319.15 Aligned_cols=192 Identities=27% Similarity=0.371 Sum_probs=161.1
Q ss_pred cEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcce
Q 000984 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKI 462 (1198)
Q Consensus 383 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i 462 (1198)
.++++|++++|++ ..|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++ .++
T Consensus 340 ~l~~~~ls~~~~~----~~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p~~G~I~~~-------------~~i 402 (590)
T PRK13409 340 LVEYPDLTKKLGD----FSLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPE-------------LKI 402 (590)
T ss_pred EEEEcceEEEECC----EEEEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEe-------------eeE
Confidence 5899999999953 25999999999999999999999999999999999999999999886 169
Q ss_pred EEEcCCCCC-CcccHHHHHhcCCCCCC-HHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhhccC
Q 000984 463 GLVSQEPVL-FTGSIKDNIAYGKDDAT-TEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKD 540 (1198)
Q Consensus 463 ~~v~Q~~~l-~~~ti~~Ni~~~~~~~~-~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal~~~ 540 (1198)
+|+||++.+ ++.|++||+.++..... ..... +.++.+ |++........+||||||||++|||||.++
T Consensus 403 ~y~~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~---------~~L~~l--~l~~~~~~~~~~LSGGe~QRvaiAraL~~~ 471 (590)
T PRK13409 403 SYKPQYIKPDYDGTVEDLLRSITDDLGSSYYKS---------EIIKPL--QLERLLDKNVKDLSGGELQRVAIAACLSRD 471 (590)
T ss_pred EEecccccCCCCCcHHHHHHHHhhhcChHHHHH---------HHHHHC--CCHHHHhCCcccCCHHHHHHHHHHHHHhcC
Confidence 999999865 46799999987532222 11222 233333 454445666778999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHhHHHHHHHHHHHhC--CCeEEEEecCcchhhc-cCEEEEEeCCEEEEecC
Q 000984 541 PRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGT 603 (1198)
Q Consensus 541 ~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~ 603 (1198)
|++|||||||++||+.+...+.+.|+++.+ ++|+|+|||+++.+.. ||+|++|++ ++...|+
T Consensus 472 p~llLLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivsHD~~~~~~~aDrvivl~~-~~~~~g~ 536 (590)
T PRK13409 472 ADLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREATALVVDHDIYMIDYISDRLMVFEG-EPGKHGH 536 (590)
T ss_pred CCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEcC-cceeeee
Confidence 999999999999999999999999998753 6899999999998865 999999965 8777776
|
|
| >COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.8e-31 Score=257.72 Aligned_cols=215 Identities=28% Similarity=0.481 Sum_probs=181.5
Q ss_pred cEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECC-eecCCcCHHHH-hc
Q 000984 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDG-INLKEFQLQWI-RK 460 (1198)
Q Consensus 383 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g-~~~~~~~~~~~-r~ 460 (1198)
.++++|++.+++. -.+|+|+||++.+||.-+|+||||+||||++-.|.|-.+|+.|++.++| .|+..++.+.+ |.
T Consensus 5 iL~~~~vsVsF~G---F~Aln~ls~~v~~Gelr~lIGpNGAGKTT~mD~ItGKtrp~~G~v~f~g~~dl~~~~e~~IAr~ 81 (249)
T COG4674 5 ILYLDGVSVSFGG---FKALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLPEHRIARA 81 (249)
T ss_pred eEEEeceEEEEcc---eeeeeeeEEEecCCeEEEEECCCCCCceeeeeeecccCCCCcceEEEcCchhhccCCHHHHHHh
Confidence 3788999999963 4599999999999999999999999999999999999999999999999 99999998877 56
Q ss_pred ceEEEcCCCCCC-cccHHHHHhcCCCCC--------------CHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCCh
Q 000984 461 KIGLVSQEPVLF-TGSIKDNIAYGKDDA--------------TTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSG 525 (1198)
Q Consensus 461 ~i~~v~Q~~~l~-~~ti~~Ni~~~~~~~--------------~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSg 525 (1198)
.||-=+|.|..| +-||+||+.+..... ..+++.+.+... |+..........||-
T Consensus 82 GIGRKFQ~PtVfe~ltV~eNLelA~~~~k~v~a~L~~r~~~~e~~ride~La~i-----------gL~~~~~~~A~~LSH 150 (249)
T COG4674 82 GIGRKFQKPTVFENLTVRENLELALNRDKSVFASLFARLRAEERRRIDELLATI-----------GLGDERDRLAALLSH 150 (249)
T ss_pred ccCccccCCeehhhccHHHHHHHHhcCCcchHHHhhhhcChhHHHHHHHHHHHc-----------ccchhhhhhhhhhcc
Confidence 799999999999 569999998653211 112333333333 445455556678999
Q ss_pred HHHHHHhHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhCCCeEEEEecCcchhhc-cCEEEEEeCCEEEEecCh
Q 000984 526 GQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTH 604 (1198)
Q Consensus 526 Gqkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~ 604 (1198)
||||++-|+.-+.++|++|+||||++++-.+.....-+.++.+..++++++|.|++.+++. ||+|-||..|.+...|+.
T Consensus 151 GqKQwLEIGMll~Q~P~lLLlDEPvAGMTd~Et~~taeLl~~la~~hsilVVEHDM~Fvr~~A~~VTVlh~G~VL~EGsl 230 (249)
T COG4674 151 GQKQWLEIGMLLAQDPKLLLLDEPVAGMTDAETEKTAELLKSLAGKHSILVVEHDMGFVREIADKVTVLHEGSVLAEGSL 230 (249)
T ss_pred chhhhhhhheeeccCCcEEEecCccCCCcHHHHHHHHHHHHHHhcCceEEEEeccHHHHHHhhheeEEEeccceeecccH
Confidence 9999999999999999999999999999555445566777788888999999999999986 999999999999999999
Q ss_pred hhHhcCC
Q 000984 605 SKLVEDP 611 (1198)
Q Consensus 605 ~~l~~~~ 611 (1198)
+++.+++
T Consensus 231 d~v~~dp 237 (249)
T COG4674 231 DEVQNDP 237 (249)
T ss_pred HHhhcCc
Confidence 9987653
|
|
| >KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=8e-29 Score=305.08 Aligned_cols=206 Identities=24% Similarity=0.388 Sum_probs=166.1
Q ss_pred CccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCC---CCCeEEECCeecCCcCHHHHhcceEEEcCCCCCC-cc
Q 000984 399 EQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDP---QAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLF-TG 474 (1198)
Q Consensus 399 ~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~---~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~-~~ 474 (1198)
..+|+|++.-++||+.+.+.||.|||||||+++|.|..+- ..|+|..||.+.++.-. ++.++|++|+.+-| ..
T Consensus 128 ~~il~~~sg~~~pg~m~lvLG~pgsG~ttllkal~g~~~~~~~~~~~isy~G~~~~e~~~---~~~~aY~~e~DvH~p~l 204 (1391)
T KOG0065|consen 128 IQILKDISGIIKPGEMTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLKEFVP---KKTVAYNSEQDVHFPEL 204 (1391)
T ss_pred ceeecCcceeEcCCceEEEecCCCCchHHHHHHHhCCCcccccCCCceeECCCccccccc---CceEEecccccccccee
Confidence 4689999999999999999999999999999999997754 25699999999988876 77899999998766 57
Q ss_pred cHHHHHhcCC----C-----CCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCC-CCCChHHHHHHhHHHhhccCCCEE
Q 000984 475 SIKDNIAYGK----D-----DATTEEIRVATELANAAKFIDKLPQGIDTLVGEHG-TQLSGGQKQRIAIARAILKDPRIL 544 (1198)
Q Consensus 475 ti~~Ni~~~~----~-----~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g-~~lSgGqkqri~lARal~~~~~il 544 (1198)
||||-|.|.. + +.++++... ......-.+-.|....||.||.+. ...|||||.|+++|-++..+++++
T Consensus 205 TVreTldFa~rck~~~~r~~~~~R~e~~~--~~~d~~lkilGL~~~~dT~VGnd~~RGvSGGerKRvsi~E~~v~~~~~~ 282 (1391)
T KOG0065|consen 205 TVRETLDFAARCKGPGSRYDEVSRREKLA--AMTDYLLKILGLDHCADTLVGNDMVRGVSGGERKRVSIGEMLVGPASIL 282 (1391)
T ss_pred EEeehhhHHHhccCCccccccccHHHHHH--HHHHHHHHHhCchhhccceecccccccccCcccceeeeeeeeecCccee
Confidence 9999999842 1 122222221 111111113345557889999775 459999999999999999999999
Q ss_pred EEeCCCCCCCHHhHHHHHHHHHHHhC--CCeEEEEecCcc--hhhccCEEEEEeCCEEEEecChhhHhc
Q 000984 545 LLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLS--TVRNADMIAVIHRGKIVEKGTHSKLVE 609 (1198)
Q Consensus 545 llDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~--~~~~~d~i~~l~~G~i~~~g~~~~l~~ 609 (1198)
..||+|-+||+-|.-++.++++.+.+ +.|.++.=|+.+ .....|.|++|.+|+++.+|+.++.+.
T Consensus 283 ~~De~t~GLDSsTal~iik~lr~~a~~~~~t~~vsi~Q~s~~~~~lFD~v~lL~eG~~iy~Gp~d~~~~ 351 (1391)
T KOG0065|consen 283 FWDEITRGLDSSTAFQIIKALRQLAHITGATALVSILQPSPEIYDLFDDVILLSEGYQIYQGPRDEVLP 351 (1391)
T ss_pred eeecccccccHHHHHHHHHHHHHHHhhhcceEEEEeccCChHHHHhhhheeeeeccceEEeccHHHHHH
Confidence 99999999999999999999987643 567777667764 567799999999999999999988753
|
|
| >COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.1e-30 Score=259.09 Aligned_cols=215 Identities=29% Similarity=0.477 Sum_probs=176.4
Q ss_pred cEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcc--CCCCCCeEEECCeecCCcCHHHH-h
Q 000984 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERF--YDPQAGEVLIDGINLKEFQLQWI-R 459 (1198)
Q Consensus 383 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~--~~~~~G~i~i~g~~~~~~~~~~~-r 459 (1198)
.++++|++.+-.++ +++|+++||+|++||+.+|.||||||||||.++|+|. |++++|+|.+||.||.++++++. |
T Consensus 3 ~L~I~dLhv~v~~~--keILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~I~~~GedI~~l~~~ERAr 80 (251)
T COG0396 3 MLEIKDLHVEVEGK--KEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDILELSPDERAR 80 (251)
T ss_pred eeEEeeeEEEecCc--hhhhcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCCCceEecceEEECCcccccCCHhHHHh
Confidence 47899999987432 4799999999999999999999999999999999995 68899999999999999998765 6
Q ss_pred cceEEEcCCCCCCcc-cHHHHHhcCCCC---------CCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHH
Q 000984 460 KKIGLVSQEPVLFTG-SIKDNIAYGKDD---------ATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQ 529 (1198)
Q Consensus 460 ~~i~~v~Q~~~l~~~-ti~~Ni~~~~~~---------~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkq 529 (1198)
..|...+|.|.=+.| |+.+-+..+... ...+++.++++..++++.. ++-.+++ .+|||+|.
T Consensus 81 ~GifLafQ~P~ei~GV~~~~fLr~a~n~~~~~~~~~~~~~~~~~e~~~~l~~~~~~------l~R~vN~---GFSGGEkK 151 (251)
T COG0396 81 AGIFLAFQYPVEIPGVTNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDEEF------LERYVNE---GFSGGEKK 151 (251)
T ss_pred cCCEEeecCCccCCCeeHHHHHHHHHHhhhccccccHHHHHHHHHHHHHcCCCHHH------hhcccCC---CcCcchHH
Confidence 779999999987776 776666532111 1123444444444443321 2233333 59999999
Q ss_pred HHhHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh-CCCeEEEEecCcchhhcc--CEEEEEeCCEEEEecChhh
Q 000984 530 RIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRNA--DMIAVIHRGKIVEKGTHSK 606 (1198)
Q Consensus 530 ri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~~~--d~i~~l~~G~i~~~g~~~~ 606 (1198)
|.-|+.+++.+|++.|||||-|+||..+-+.+.+.+..+. +++++++|||.-..+... |+|.||-+|+|+..|.+ +
T Consensus 152 R~EilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr~~~~~~liITHy~rll~~i~pD~vhvl~~GrIv~sG~~-e 230 (251)
T COG0396 152 RNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQRLLDYIKPDKVHVLYDGRIVKSGDP-E 230 (251)
T ss_pred HHHHHHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHhhcCCCEEEEEECCEEEecCCH-H
Confidence 9999999999999999999999999999999999998876 478999999999988764 99999999999999999 6
Q ss_pred Hhc
Q 000984 607 LVE 609 (1198)
Q Consensus 607 l~~ 609 (1198)
|..
T Consensus 231 l~~ 233 (251)
T COG0396 231 LAE 233 (251)
T ss_pred HHH
Confidence 654
|
|
| >COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.3e-29 Score=261.91 Aligned_cols=187 Identities=28% Similarity=0.423 Sum_probs=155.1
Q ss_pred CccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcceEEEcCCCCCC--cccH
Q 000984 399 EQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLF--TGSI 476 (1198)
Q Consensus 399 ~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~--~~ti 476 (1198)
..+|+||||++++||.+||+|+||||||||+++|.|.++|++|+|.++| +++..---..=| +.|-
T Consensus 40 ~~aL~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~Pt~G~v~v~G-------------~v~~li~lg~Gf~pelTG 106 (249)
T COG1134 40 FWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKVKVTG-------------KVAPLIELGAGFDPELTG 106 (249)
T ss_pred EEEecCceEEEeCCCEEEEECCCCCcHHHHHHHHhCccCCCCceEEEcc-------------eEehhhhcccCCCcccch
Confidence 4689999999999999999999999999999999999999999999999 455433333333 3589
Q ss_pred HHHHhcCC--CCCC----HHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhhccCCCEEEEeCCC
Q 000984 477 KDNIAYGK--DDAT----TEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEAT 550 (1198)
Q Consensus 477 ~~Ni~~~~--~~~~----~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal~~~~~illlDe~t 550 (1198)
||||.+-. ...+ ++.+.+..+-++|.+++ .....+.|.|++.|++.|-|.-.+|+|||+||.+
T Consensus 107 reNi~l~~~~~G~~~~ei~~~~~eIieFaELG~fi-----------~~PvktYSSGM~aRLaFsia~~~~pdILllDEvl 175 (249)
T COG1134 107 RENIYLRGLILGLTRKEIDEKVDEIIEFAELGDFI-----------DQPVKTYSSGMYARLAFSVATHVEPDILLLDEVL 175 (249)
T ss_pred HHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHh-----------hCchhhccHHHHHHHHHhhhhhcCCCEEEEehhh
Confidence 99997521 1122 34455555566666654 2334589999999999999999999999999999
Q ss_pred CCCCHHhHHHHHHHHHHH-hCCCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChhhHhc
Q 000984 551 SALDAESEKVVQEALDRI-MVNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVE 609 (1198)
Q Consensus 551 s~lD~~~~~~i~~~i~~~-~~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~ 609 (1198)
|..|+.=.+.-.+.+.++ .+++|+|+|+|+++.+++ ||++++|++|+|...|++++..+
T Consensus 176 avGD~~F~~K~~~rl~e~~~~~~tiv~VSHd~~~I~~~Cd~~i~l~~G~i~~~G~~~~vi~ 236 (249)
T COG1134 176 AVGDAAFQEKCLERLNELVEKNKTIVLVSHDLGAIKQYCDRAIWLEHGQIRMEGSPEEVIP 236 (249)
T ss_pred hcCCHHHHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhcCeeEEEeCCEEEEcCCHHHHHH
Confidence 999999877777778777 678999999999999986 99999999999999999999865
|
|
| >KOG0064 consensus Peroxisomal long-chain acyl-CoA transporter, ABC superfamily [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.8e-25 Score=244.20 Aligned_cols=437 Identities=16% Similarity=0.195 Sum_probs=261.0
Q ss_pred HHHHHHHHHHHHHHHHhCCh---hhhhccCCcchHH---HHHHhHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhH
Q 000984 132 ERQATRIRGLYLKTILRQDV---AFFDNETNTGEVV---GRMSGDTVLIQDAMGEKVGKFLQLMATFLG-GFLIAFIKGW 204 (1198)
Q Consensus 132 ~~~~~~lr~~~~~~ll~~~~---~~f~~~~~~G~i~---~r~s~D~~~i~~~~~~~~~~~~~~~~~~i~-~~i~~~~~~~ 204 (1198)
.+++-.+|..+.++++++=. .||.-.+.-|++- |.+++|+..+.+.+...+..+.-.++-++. ++-+.-...-
T Consensus 182 ~klaLafrtrL~~h~y~~Y~snqTyY~Vsn~d~~i~n~D~sLTeDI~~Fs~svahLysnLtKP~lDl~l~s~~L~~s~~s 261 (728)
T KOG0064|consen 182 SKLALAFRTRLTRHAYDMYLSNQTFYKVSNLDSVIENADNSLTEDIAKFSDSVAHLYSNLTKPVLDLILISFTLLDSATS 261 (728)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCceEEEecccchhcCccchhHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhhcc
Confidence 35556666666666655321 3332211223333 578899988888776555555444433221 1111111000
Q ss_pred HHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcHHHHHHHHHHHHHHHHHH--
Q 000984 205 LLT---LVMLSSIPLLAMSGGVMAIMISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYKS-- 279 (1198)
Q Consensus 205 ~l~---l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~-- 279 (1198)
..+ .+..+.+.+-..+.+.+++...++..+...........=+..+.+-..|..|+..+.+.++.++..+.....
T Consensus 262 ~g~~~~~~~~lvv~lTa~iLr~~sP~Fg~Lv~eeA~r~g~lr~~Hs~ii~NsEEIAfy~GhkvE~~ql~~sy~~L~~qm~ 341 (728)
T KOG0064|consen 262 VGAAGITLAGLVVYLTAFILRAVSPKFGKLVAEEAARKGYLRYLHSNIITNSEEIAFYGGHKVELTQVDESYNRLVEQMN 341 (728)
T ss_pred ccccchhhhhhHHHHHHHHHHHhCCchhhHHHHHHhhccHHHHHHHHHhccHHHHHhhcccHHHHHHHHHHHHHHHHHHH
Confidence 000 001111111112233344444444444444445555666778899999999999998888777655443322
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------hCCCCHH------------HHHHHHHH-HHHHHHHHH
Q 000984 280 -GVQEGLAAGIGLGMVMLIVFCSYALSVWYGGKLIL-------EEGYNGG------------QVVNVMVA-VLTGSMSLG 338 (1198)
Q Consensus 280 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~-------~~~~~~~------------~~~~~~~~-~l~~~~~l~ 338 (1198)
..+..++.-+. --.++=++|-|.-++. ....+.+ .-|++--. .+..+-++.
T Consensus 342 li~k~r~~YiMl--------eqF~mKYvWsg~GlvmvsiPI~~~t~~s~~~~~~~e~~~srt~~f~t~r~LL~saAdAie 413 (728)
T KOG0064|consen 342 LIFKVRLWYIML--------EQFVMKYTWSGTGLVMVSIPILTSTLASEGTLQLSEEGNSRTKEFITNRRLLLSAADAIE 413 (728)
T ss_pred HHHHHHHHHHHH--------HHHHHHHhhccCceEEEEeeeeecccCCCCcccccccchhHHHHHHHHHHHHHHHHHHHH
Confidence 11222211111 0111233444432211 0111111 11111111 112222333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH---HccC----------CCCCccC-----CCCcccCC-----CcccEEEEeEEEEcCC
Q 000984 339 EASPCLSAFGAGQAAAFKMFET---INRK----------PEIDAYD-----TKGKILDD-----IRGDIELRDVYFSYPA 395 (1198)
Q Consensus 339 ~~~~~~~~~~~~~~~~~r~~~~---~~~~----------~~~~~~~-----~~~~~~~~-----~~g~i~~~~v~~~y~~ 395 (1198)
.+....-.+.+-..-..|+++. +++. ++..+.. .++.+.+. ....|.++|+-.--|+
T Consensus 414 RlMssyKeItqLaGyt~Rv~~mf~v~~dv~~g~~~k~~v~e~~~~~~~~e~r~s~~l~~~~~i~~~~gI~lenIpvItP~ 493 (728)
T KOG0064|consen 414 RLMSSYKEITQLAGYTNRVFTMFSVLHDVHKGNYNKTAVPEILSSRTIDESRNSNPLPTTDAIRNFNGIILENIPVITPA 493 (728)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcccccccccCchhhccCccccccCCcCCccchhhcccceEEecCceeccC
Confidence 3333333333333334454432 2211 1110000 00000000 1234889998877665
Q ss_pred CCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcceEEEcCCCCCCccc
Q 000984 396 RPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGS 475 (1198)
Q Consensus 396 ~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~t 475 (1198)
. .-+...++|+|++|-.+.|+||||||||+|.+.|.|+.|...|...+.- +.+|-|+||.|.+--||
T Consensus 494 ~--~vvv~~Ltf~i~~G~hLLItGPNGCGKSSLfRILggLWPvy~g~L~~P~-----------~~~mFYIPQRPYms~gt 560 (728)
T KOG0064|consen 494 G--DVLVPKLTFQIEPGMHLLITGPNGCGKSSLFRILGGLWPVYNGLLSIPR-----------PNNIFYIPQRPYMSGGT 560 (728)
T ss_pred c--ceeecceeEEecCCceEEEECCCCccHHHHHHHHhccCcccCCeeecCC-----------CcceEeccCCCccCcCc
Confidence 3 3578999999999999999999999999999999999999999887653 33699999999988999
Q ss_pred HHHHHhcCCC-------CCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhhccCCCEEEEeC
Q 000984 476 IKDNIAYGKD-------DATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDE 548 (1198)
Q Consensus 476 i~~Ni~~~~~-------~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal~~~~~illlDe 548 (1198)
+||-|.++.. .++|.+++..++.++++.. .+-..|.|...+-+ .-||||+|||+++||-.|++|+--+|||
T Consensus 561 lRDQIIYPdS~e~~~~kg~~d~dL~~iL~~v~L~~i-~qr~~g~da~~dWk-d~LsgGekQR~~mARm~yHrPkyalLDE 638 (728)
T KOG0064|consen 561 LRDQIIYPDSSEQMKRKGYTDQDLEAILDIVHLEHI-LQREGGWDAVRDWK-DVLSGGEKQRMGMARMFYHRPKYALLDE 638 (728)
T ss_pred ccceeecCCcHHHHHhcCCCHHHHHHHHHHhhHHHH-HHhccChhhhccHH-hhccchHHHHHHHHHHHhcCcchhhhhh
Confidence 9999998642 4678889999999998764 45566777765433 4699999999999999999999999999
Q ss_pred CCCCCCHHhHHHHHHHHHHHhCCCeEEEEecCcchhhccCEEEEE
Q 000984 549 ATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVI 593 (1198)
Q Consensus 549 ~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~~d~i~~l 593 (1198)
+|||+-.+.|..+.++.++. +-+.|-||||++..+.-...+-.
T Consensus 639 cTsAvsidvE~~i~~~ak~~--gi~llsithrpslwk~h~~ll~~ 681 (728)
T KOG0064|consen 639 CTSAVSIDVEGKIFQAAKDA--GISLLSITHRPSLWKYHTHLLEF 681 (728)
T ss_pred hhcccccchHHHHHHHHHhc--CceEEEeecCccHHHHHHHHHhc
Confidence 99999999999999988875 78999999999988765444443
|
|
| >COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1e-28 Score=255.69 Aligned_cols=201 Identities=25% Similarity=0.399 Sum_probs=158.2
Q ss_pred ccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcceEEEc-CCC---CCCc--
Q 000984 400 QIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVS-QEP---VLFT-- 473 (1198)
Q Consensus 400 ~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~~v~-Q~~---~l~~-- 473 (1198)
++.+||||+|++|+.++.+|+||+||||++|+|.|.+.|++|.|.++|.+--+-..+.+| ++++|. |.. |-.+
T Consensus 38 ~AVqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGll~p~~G~v~V~G~~Pf~~~~~~~~-~~~~v~gqk~ql~Wdlp~~ 116 (325)
T COG4586 38 EAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNGKDPFRRREEYLR-SIGLVMGQKLQLWWDLPAL 116 (325)
T ss_pred hhhheeeeecCCCcEEEEEcCCCCcchhhHHHHhCccccCCCeEEecCcCcchhHHHHHH-HHHHHhhhhheeeeechhh
Confidence 588999999999999999999999999999999999999999999999876654444444 454443 322 3222
Q ss_pred ccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhhccCCCEEEEeCCCCCC
Q 000984 474 GSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSAL 553 (1198)
Q Consensus 474 ~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal~~~~~illlDe~ts~l 553 (1198)
.|.+=|=... +..+.+..+-. . ...+-| +++..+......||-|||-|.-||.||+++|+||+|||||=+|
T Consensus 117 ds~~v~~~Iy--~Ipd~~F~~r~--~---~l~eiL--dl~~~lk~~vr~LSlGqRmraeLaaaLLh~p~VLfLDEpTvgL 187 (325)
T COG4586 117 DSLEVLKLIY--EIPDDEFAERL--D---FLTEIL--DLEGFLKWPVRKLSLGQRMRAELAAALLHPPKVLFLDEPTVGL 187 (325)
T ss_pred hhHHHHHHHH--hCCHHHHHHHH--H---HHHHHh--cchhhhhhhhhhccchHHHHHHHHHHhcCCCcEEEecCCccCc
Confidence 2222221111 23444444322 2 223333 6677777888899999999999999999999999999999999
Q ss_pred CHHhHHHHHHHHHHHh--CCCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChhhHhcC
Q 000984 554 DAESEKVVQEALDRIM--VNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVED 610 (1198)
Q Consensus 554 D~~~~~~i~~~i~~~~--~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 610 (1198)
|..+...+.+.+++.. .++||++.||.++-+.. ||||++|++|+++..|+.++|.++
T Consensus 188 DV~aq~~ir~Flke~n~~~~aTVllTTH~~~di~~lc~rv~~I~~Gqlv~dg~l~~l~~~ 247 (325)
T COG4586 188 DVNAQANIREFLKEYNEERQATVLLTTHIFDDIATLCDRVLLIDQGQLVFDGTLAQLQEQ 247 (325)
T ss_pred chhHHHHHHHHHHHHHHhhCceEEEEecchhhHHHhhhheEEeeCCcEeecccHHHHHHH
Confidence 9999999999998764 47899999999998865 999999999999999999988764
|
|
| >COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.3e-28 Score=233.19 Aligned_cols=227 Identities=27% Similarity=0.446 Sum_probs=177.5
Q ss_pred cEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECC-----eecCCcCHHH
Q 000984 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDG-----INLKEFQLQW 457 (1198)
Q Consensus 383 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g-----~~~~~~~~~~ 457 (1198)
-+++++++..|... .--+|+||++.|||..+|||.||||||||+++|.+-+.|+.|+|..+- .|+-.++..+
T Consensus 6 LL~V~~lsk~Yg~~---~gc~~vsF~l~PGeVLgiVGESGSGKtTLL~~is~rl~p~~G~v~Y~~r~~~~~dl~~msEae 82 (258)
T COG4107 6 LLSVSGLSKLYGPG---KGCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAGTVTYRMRDGQPRDLYTMSEAE 82 (258)
T ss_pred ceeehhhhhhhCCC---cCccccceeecCCcEEEEEecCCCcHHhHHHHHhcccCCCCCeEEEEcCCCCchhHhhhchHH
Confidence 37788999999643 367999999999999999999999999999999999999999998865 2333344333
Q ss_pred ----HhcceEEEcCCCC--CC-----cccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChH
Q 000984 458 ----IRKKIGLVSQEPV--LF-----TGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGG 526 (1198)
Q Consensus 458 ----~r~~i~~v~Q~~~--l~-----~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgG 526 (1198)
+|..-|+|.|+|- |- .+.|-|-+. .-..-.+..++.. ..+|++... =+.+.+.+....+|||
T Consensus 83 RR~L~RTeWG~VhQnP~DGLRm~VSAG~NiGERlm-a~G~RHYG~iR~~-----a~~WL~~VE-I~~~RiDD~PrtFSGG 155 (258)
T COG4107 83 RRRLLRTEWGFVHQNPRDGLRMQVSAGGNIGERLM-AIGARHYGNIRAE-----AQDWLEEVE-IDLDRIDDLPRTFSGG 155 (258)
T ss_pred HHHHhhhccceeecCccccceeeeccCCccchhHH-hhhhhhhhhHHHH-----HHHHHHhcc-cCcccccCcccccchH
Confidence 3456899999993 11 123333332 1111111222221 234555543 2345778888999999
Q ss_pred HHHHHhHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhC--CCeEEEEecCcchhhc-cCEEEEEeCCEEEEecC
Q 000984 527 QKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGT 603 (1198)
Q Consensus 527 qkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~ 603 (1198)
++||+-|||-|...|+++++||||.+||......+.+.++.+-. +-.+++|||++...+. +||.+||++|+++|.|-
T Consensus 156 MqQRLQiARnLVt~PrLvfMDEPTGGLDVSVQARLLDllrgLv~~l~la~viVTHDl~VarLla~rlmvmk~g~vve~GL 235 (258)
T COG4107 156 MQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLADRLMVMKQGQVVESGL 235 (258)
T ss_pred HHHHHHHHHHhccCCceEEecCCCCCcchhhHHHHHHHHHHHHHhcCceEEEEechhHHHHHhhhcceeecCCCEecccc
Confidence 99999999999999999999999999999999999898887653 5689999999999876 99999999999999999
Q ss_pred hhhHhcCCCchhHHHH
Q 000984 604 HSKLVEDPEGAYSQLI 619 (1198)
Q Consensus 604 ~~~l~~~~~~~~~~~~ 619 (1198)
.+..+.++...|.++.
T Consensus 236 TDrvLDDP~hPYTQLL 251 (258)
T COG4107 236 TDRVLDDPHHPYTQLL 251 (258)
T ss_pred ccccccCCCCchHHHH
Confidence 9999998888888775
|
|
| >KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.1e-28 Score=299.29 Aligned_cols=220 Identities=31% Similarity=0.484 Sum_probs=179.1
Q ss_pred ccEEEEeEEEEcCCCC--CCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCC---CCCeEEECCeecCCcCHH
Q 000984 382 GDIELRDVYFSYPARP--NEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDP---QAGEVLIDGINLKEFQLQ 456 (1198)
Q Consensus 382 g~i~~~~v~~~y~~~~--~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~---~~G~i~i~g~~~~~~~~~ 456 (1198)
-.+.++|++..-+... .+.+|+|||.+++|||..||.||||||||||+++|.|-.+. .+|+|.+||+ ..+.+
T Consensus 24 ~~~~~~~~~~~~~~~~~~~k~iL~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG~---~~~~~ 100 (613)
T KOG0061|consen 24 VKLSFRNLTLSSKEKSKKTKTILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNGR---PRDSR 100 (613)
T ss_pred ceeEEEEEEEEecCCCCccceeeeCcEEEEecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEECCc---cCchh
Confidence 3588999998876542 47899999999999999999999999999999999999874 7899999993 45667
Q ss_pred HHhcceEEEcCCCCCC-cccHHHHHhcCC----CC-CCHHHHHHHHHHhcHHHHHHhCCC--CccchhcC-CCCCCChHH
Q 000984 457 WIRKKIGLVSQEPVLF-TGSIKDNIAYGK----DD-ATTEEIRVATELANAAKFIDKLPQ--GIDTLVGE-HGTQLSGGQ 527 (1198)
Q Consensus 457 ~~r~~i~~v~Q~~~l~-~~ti~~Ni~~~~----~~-~~~~~~~~~~~~~~~~~~i~~l~~--g~~t~v~~-~g~~lSgGq 527 (1198)
.+++..|||.||..++ +-||||++.|.. |. .+.++..+. +++.+.+|.- =-||.+|. +...+||||
T Consensus 101 ~~~~~s~yV~QdD~l~~~LTV~EtL~f~A~lrlp~~~~~~~k~~~-----V~~vi~~LgL~~~~~t~ig~~~~rgiSGGE 175 (613)
T KOG0061|consen 101 SFRKISGYVQQDDVLLPTLTVRETLRFSALLRLPSSLSKEEKRER-----VEEVISELGLEKCADTLIGNPGIRGLSGGE 175 (613)
T ss_pred hhhheeEEEcccccccccccHHHHHHHHHHhcCCCCCCHHHHHHH-----HHHHHHHcCChhhccceecCCCCCccccch
Confidence 7889999999999988 569999998742 21 122222211 1223333311 14577764 335799999
Q ss_pred HHHHhHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh-CCCeEEEEecCcch--hhccCEEEEEeCCEEEEecCh
Q 000984 528 KQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLST--VRNADMIAVIHRGKIVEKGTH 604 (1198)
Q Consensus 528 kqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~--~~~~d~i~~l~~G~i~~~g~~ 604 (1198)
|+|+++|.-++.||.||+||||||+||+.+...+.+.++++. +|||||+.=|+++. ....|++++|.+|+++..|++
T Consensus 176 rkRvsia~Ell~~P~iLflDEPTSGLDS~sA~~vv~~Lk~lA~~grtVi~tIHQPss~lf~lFD~l~lLs~G~~vy~G~~ 255 (613)
T KOG0061|consen 176 RKRVSIALELLTDPSILFLDEPTSGLDSFSALQVVQLLKRLARSGRTVICTIHQPSSELFELFDKLLLLSEGEVVYSGSP 255 (613)
T ss_pred hhHHHHHHHHHcCCCEEEecCCCCCcchhhHHHHHHHHHHHHhCCCEEEEEEeCCcHHHHHHHhHhhhhcCCcEEEecCH
Confidence 999999999999999999999999999999999999998875 58999999999974 466999999999999999999
Q ss_pred hhHhc
Q 000984 605 SKLVE 609 (1198)
Q Consensus 605 ~~l~~ 609 (1198)
+++.+
T Consensus 256 ~~~~~ 260 (613)
T KOG0061|consen 256 RELLE 260 (613)
T ss_pred HHHHH
Confidence 88753
|
|
| >PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.6e-29 Score=249.23 Aligned_cols=136 Identities=38% Similarity=0.727 Sum_probs=122.6
Q ss_pred ccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcceEEEcCCCCCCcc-cHHHHH
Q 000984 402 FSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTG-SIKDNI 480 (1198)
Q Consensus 402 l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~-ti~~Ni 480 (1198)
|+|+||++++|++++|+|++|||||||+++|+|.++|.+|+|.++|.++.+.+....|+.++|++|+++++.+ |+++|
T Consensus 1 L~~v~~~i~~g~~~~i~G~nGsGKStLl~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~tv~~~- 79 (137)
T PF00005_consen 1 LKNVSLEIKPGEIVAIVGPNGSGKSTLLKALAGLLPPDSGSILINGKDISDIDIEELRRRIGYVPQDPQLFPGLTVREN- 79 (137)
T ss_dssp EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSSHESEEEEEETTEEGTTSHHHHHHHTEEEEESSHCHHTTSBHHHH-
T ss_pred CCceEEEEcCCCEEEEEccCCCccccceeeecccccccccccccccccccccccccccccccccccccccccccccccc-
Confidence 6899999999999999999999999999999999999999999999999999999999999999999999875 59999
Q ss_pred hcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhhccCCCEEEEeCCCC
Q 000984 481 AYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATS 551 (1198)
Q Consensus 481 ~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal~~~~~illlDe~ts 551 (1198)
..+++++++++..++.+ ..++.++.+...||||||||++||||++++|++||||||||
T Consensus 80 ------~~~~~~~~~l~~l~~~~-------~~~~~~~~~~~~LS~Ge~~rl~la~al~~~~~llllDEPt~ 137 (137)
T PF00005_consen 80 ------ESDERIEEVLKKLGLED-------LLDRKIGQRASSLSGGEKQRLALARALLKNPKLLLLDEPTN 137 (137)
T ss_dssp ------HHHHHHHHHHHHTTHGG-------GTGSBGTSCGGGSCHHHHHHHHHHHHHHTTSSEEEEESTTT
T ss_pred ------ccccccccccccccccc-------ccccccccccchhhHHHHHHHHHHHHHHcCCCEEEEeCCCC
Confidence 23556777776665443 35677888889999999999999999999999999999996
|
ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D .... |
| >COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.3e-27 Score=277.73 Aligned_cols=203 Identities=29% Similarity=0.389 Sum_probs=170.6
Q ss_pred ccEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcc
Q 000984 382 GDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKK 461 (1198)
Q Consensus 382 g~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~ 461 (1198)
..++++|+++.|++. +++++++||.|.+|+++||+||||+|||||+++|.|...|.+|+|.+.-. -+
T Consensus 320 ~vl~~~~~~~~y~~~--~~l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~~-----------v~ 386 (530)
T COG0488 320 LVLEFENVSKGYDGG--RLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGET-----------VK 386 (530)
T ss_pred eeEEEeccccccCCC--ceeecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhcccCCceEEeCCc-----------eE
Confidence 458999999999643 57999999999999999999999999999999999999999999987541 27
Q ss_pred eEEEcCCC-CCC-cccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhhcc
Q 000984 462 IGLVSQEP-VLF-TGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILK 539 (1198)
Q Consensus 462 i~~v~Q~~-~l~-~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal~~ 539 (1198)
+||.+|+- .++ +.|+-|++.-..|...+.+++..+...++... .+......||||||.|+.||+.++.
T Consensus 387 igyf~Q~~~~l~~~~t~~d~l~~~~~~~~e~~~r~~L~~f~F~~~----------~~~~~v~~LSGGEk~Rl~La~ll~~ 456 (530)
T COG0488 387 IGYFDQHRDELDPDKTVLEELSEGFPDGDEQEVRAYLGRFGFTGE----------DQEKPVGVLSGGEKARLLLAKLLLQ 456 (530)
T ss_pred EEEEEehhhhcCccCcHHHHHHhhCccccHHHHHHHHHHcCCChH----------HHhCchhhcCHhHHHHHHHHHHhcc
Confidence 99999988 343 45899999866655556667766666543322 1234456799999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHhHHHHHHHHHHHhCCCeEEEEecCcchhhc-cCEEEEEeCCEEEEe-cChhhHhcC
Q 000984 540 DPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEK-GTHSKLVED 610 (1198)
Q Consensus 540 ~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~-g~~~~l~~~ 610 (1198)
+|.+|||||||++||.++...+.++|..+ ..|+|+|||+..++.. |++|+.+++ ++.+. |++++..+.
T Consensus 457 ~pNvLiLDEPTNhLDi~s~~aLe~aL~~f--~Gtvl~VSHDr~Fl~~va~~i~~~~~-~~~~~~g~y~~y~~~ 526 (530)
T COG0488 457 PPNLLLLDEPTNHLDIESLEALEEALLDF--EGTVLLVSHDRYFLDRVATRIWLVED-KVEEFEGGYEDYLEQ 526 (530)
T ss_pred CCCEEEEcCCCccCCHHHHHHHHHHHHhC--CCeEEEEeCCHHHHHhhcceEEEEcC-ceeEcCCCHHHHHHh
Confidence 99999999999999999999999999886 5799999999999987 999999998 77765 888877653
|
|
| >COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.8e-24 Score=249.11 Aligned_cols=390 Identities=12% Similarity=0.123 Sum_probs=302.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccccccCCCChh------hHHHHHHhhHHHHHHHH
Q 000984 764 ALIYLALGAGSFLLSPAQSYFFAVAGNKLIQRIRSMCFEKVIHMEVSWFDEPEHSSG------AIGARLSADAASVRALV 837 (1198)
Q Consensus 764 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~~l~~~ll~~p~~fFd~~~~~~G------~i~~r~s~D~~~i~~~l 837 (1198)
+.+|..++.+..++...+.|+......+.-.-|-+.+.++-+...-.||. ...| ..=.|+..|+...-+..
T Consensus 89 l~~f~~ia~~~v~~~v~~~~L~~~l~~~wR~wLt~~l~~~wl~~~~~y~l---~~~~~~~~~dNpDQRi~eDi~~~t~~t 165 (604)
T COG4178 89 LQVFAIIAGLLVLLNVAQTWLNQMLRLRWREWLTKDLLDRWLDPRRYYRL---AQAGGIGLIDNPDQRIQEDIRNFTETT 165 (604)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHH---HhcccccCCCChHHhHHHHHHHHHhhH
Confidence 44555666666667777888888888888888888888888888855554 2333 23479999999998888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH---------------HhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 000984 838 GDALARIVQNISTAAAGLIIAF---------------TASWQLALIILVMLPLIGVSGYTQMKFMKGFSADAKMKYEEAS 902 (1198)
Q Consensus 838 ~~~l~~~i~~~~~~i~~li~~~---------------~~~~~l~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 902 (1198)
......++.++++++...+++. .+...+.+++++.+++..++...++|.+.+.+-+.++..++..
T Consensus 166 ~~l~~g~l~s~islisF~~iLw~lsg~~~~~~~g~~~~I~g~mv~~~i~Ya~~~s~~~~~iGr~Li~LN~~~~~~EA~fR 245 (604)
T COG4178 166 LDLSFGLLQSVISLISFTGILWSLSGGLAFTIGGFSFGIPGYMVWAVIIYAISASLLTHLIGRPLIRLNFERQKLEADFR 245 (604)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccCcceEeecccccccchHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHH
Confidence 8888888888888777777665 3455666777777777777888899999999999999999998
Q ss_pred HHHHHHhchhHHHHHhcchHHHHHHHHHHhhhHHHHhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHH
Q 000984 903 QVANDAVGSIRTVASFCAEEKVMQLYKKKCEAPMKTGIRQGMVSGGGFGASFFLLFAFYAASFYAGARLVEDGKATFSDV 982 (1198)
Q Consensus 903 ~~~~E~l~gi~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~~t~g~l 982 (1198)
..+.-.-++...|-.|+.|+.+.++.++..+...+...+.......+..+......+..++-+..++-....|.+++|++
T Consensus 246 ~~Lvrv~enaE~IAly~GE~~Er~~l~~~f~~v~~n~~~l~~~~~~l~~~~~gy~~~s~v~P~li~ap~~f~g~i~~G~l 325 (604)
T COG4178 246 YSLVRVRENAEAIALYRGEKVERRRLDDRFDAVLGNWRRLVRAQIRLTWFQLGYGWLSVVLPILIAAPRYFSGQITFGGL 325 (604)
T ss_pred HHHHHHHhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhHHHHHHHHHhccHhhhcCcChHHHH
Confidence 88888888999999999999999998888877766655554444444444444444444444555666678899999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhcCC------CCCCCCCCCCCcc--cCCcccEEEeeeeEECCC
Q 000984 983 FKVFFSLTMTAIGISQSSSFSSDSNKAKSAAASIFAIIDRE------SKIDPSDESGTIL--EDVKGEIELHHVSFKYPS 1054 (1198)
Q Consensus 983 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~~~------~~~~~~~~~~~~~--~~~~G~I~f~nVsf~Y~~ 1054 (1198)
+............++......+.+..-.+...|+.++.+.- ++.+... ..... ......|+|+|++..-|+
T Consensus 326 mqa~~aF~~v~sslswfi~~~~~ia~~rA~~~Rl~~f~~ai~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~~nl~l~~p~ 404 (604)
T COG4178 326 MQAVGAFGQVHSSLSWFIDNYDAIADWRATLLRLAEFRQALEAAQMDTEKPART-GRRIDFDDNADHGITLENLSLRTPD 404 (604)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhccCcccccCcc-cccccccccccceeEEeeeeEECCC
Confidence 99999999999999999999999999999999998876422 1111110 00000 001467999999999985
Q ss_pred CCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHhhcceecccccccccc
Q 000984 1055 RPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDT 1134 (1198)
Q Consensus 1055 ~~~~~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~~i~l~~LR~~IsiV~Qdp~LF~gT 1134 (1198)
+ ...|+++||+|+|||.+-|.|+||||||||+++|.++|+..+|+|.+=. -+++-++||.|++=.||
T Consensus 405 ~--~~ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g~G~I~~P~-----------~~~~lflpQ~PY~p~Gt 471 (604)
T COG4178 405 G--QTLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWGSGRISMPA-----------DSALLFLPQRPYLPQGT 471 (604)
T ss_pred C--CeeeccceeeeCCCCEEEEECCCCCCHHHHHHHHhccCccCCCceecCC-----------CCceEEecCCCCCCCcc
Confidence 4 3689999999999999999999999999999999999999999886641 12458999999999999
Q ss_pred HHHHHhcCCCC-CCCHHHHHHHHHHcchHHHHHhccc
Q 000984 1135 IRANIAYGKGG-DATEAEIQAASEMANAHKFICSLQQ 1170 (1198)
Q Consensus 1135 IreNI~~g~~~-~~tdeei~~Al~~A~l~dfI~~LP~ 1170 (1198)
+||=|.|-+.+ +.+|+|+.+++.++++.+++++|.+
T Consensus 472 Lre~l~YP~~~~~~~d~~l~~vL~~vgL~~L~~rl~~ 508 (604)
T COG4178 472 LREALCYPNAAPDFSDAELVAVLHKVGLGDLAERLDE 508 (604)
T ss_pred HHHHHhCCCCCCCCChHHHHHHHHHcCcHHHHHHHhc
Confidence 99999985433 3899999999999999999999754
|
|
| >COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.7e-27 Score=233.10 Aligned_cols=188 Identities=22% Similarity=0.383 Sum_probs=155.6
Q ss_pred EEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcceE
Q 000984 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIG 463 (1198)
Q Consensus 384 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~ 463 (1198)
++.+|++..- .+..++.++||++.+||.+-|.||||||||||+++|.|+++|.+|+|.++|.++..... ..++.+-
T Consensus 3 L~a~~L~~~R---~e~~lf~~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~p~~G~v~~~~~~i~~~~~-~~~~~l~ 78 (209)
T COG4133 3 LEAENLSCER---GERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQNVRE-SYHQALL 78 (209)
T ss_pred chhhhhhhcc---CcceeecceeEEEcCCCEEEEECCCCCcHHHHHHHHHcccCCCCCeEEecCCCCccchh-hHHHHHH
Confidence 3456666653 34679999999999999999999999999999999999999999999999988876543 3466788
Q ss_pred EEcCCCCCC-cccHHHHHhcCCCC---CCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhhcc
Q 000984 464 LVSQEPVLF-TGSIKDNIAYGKDD---ATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILK 539 (1198)
Q Consensus 464 ~v~Q~~~l~-~~ti~~Ni~~~~~~---~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal~~ 539 (1198)
|+.-.|-+= .-|+.||+.|-... .+.+.++++++.+++... ..+| + .+||.|||.|+||||-++.
T Consensus 79 yLGH~~giK~eLTa~ENL~F~~~~~~~~~~~~i~~Al~~vgL~g~-~dlp------~----~~LSAGQqRRvAlArL~ls 147 (209)
T COG4133 79 YLGHQPGIKTELTALENLHFWQRFHGSGNAATIWEALAQVGLAGL-EDLP------V----GQLSAGQQRRVALARLWLS 147 (209)
T ss_pred HhhccccccchhhHHHHHHHHHHHhCCCchhhHHHHHHHcCcccc-cccc------h----hhcchhHHHHHHHHHHHcC
Confidence 888888765 56999999985432 356889999999887653 3333 3 4799999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHhHHHHHHHHHHHh-CCCeEEEEecCcchhhc
Q 000984 540 DPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRN 586 (1198)
Q Consensus 540 ~~~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~~ 586 (1198)
.+++.|||||+++||.+....+...+.... ++..||+.||..-.+..
T Consensus 148 ~~pLWiLDEP~taLDk~g~a~l~~l~~~H~~~GGiVllttHq~l~~~~ 195 (209)
T COG4133 148 PAPLWILDEPFTALDKEGVALLTALMAAHAAQGGIVLLTTHQPLPIAS 195 (209)
T ss_pred CCCceeecCcccccCHHHHHHHHHHHHHHhcCCCEEEEecCCccCCCc
Confidence 999999999999999999999888887654 57788899998765543
|
|
| >cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion | Back alignment and domain information |
|---|
Probab=99.94 E-value=7e-27 Score=253.46 Aligned_cols=193 Identities=24% Similarity=0.329 Sum_probs=127.7
Q ss_pred CCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEEC-C------eecC---CcCHHHHhc-ceEEEc
Q 000984 398 NEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLID-G------INLK---EFQLQWIRK-KIGLVS 466 (1198)
Q Consensus 398 ~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~-g------~~~~---~~~~~~~r~-~i~~v~ 466 (1198)
+.++|+|+||++++||+++|+|+||||||||+..+.. .+|++.+. + ..+. .-+...++. ..++..
T Consensus 7 ~~~~l~~vsl~i~~Ge~~~l~G~sGsGKSTL~~~~i~----~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (226)
T cd03270 7 REHNLKNVDVDIPRNKLVVITGVSGSGKSSLAFDTIY----AEGQRRYVESLSAYARQFLGQMDKPDVDSIEGLSPAIAI 82 (226)
T ss_pred hhhccccceeecCCCcEEEEEcCCCCCHHHHHHHHHH----HHHHHHHhhcccchhhhhhcccCccccccccCCCceEEe
Confidence 3569999999999999999999999999999632221 12332211 0 0000 000111121 234444
Q ss_pred CCCCC-Cc-----ccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccc-hhcCCCCCCChHHHHHHhHHHhhcc
Q 000984 467 QEPVL-FT-----GSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDT-LVGEHGTQLSGGQKQRIAIARAILK 539 (1198)
Q Consensus 467 Q~~~l-~~-----~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t-~v~~~g~~lSgGqkqri~lARal~~ 539 (1198)
|++.. ++ +++.+...+.......+..... .+.++.+ |+.. .......+||||||||++||||++.
T Consensus 83 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~------~~~l~~~--~l~~~~~~~~~~~LSgG~~qrv~laral~~ 154 (226)
T cd03270 83 DQKTTSRNPRSTVGTVTEIYDYLRLLFARVGIRER------LGFLVDV--GLGYLTLSRSAPTLSGGEAQRIRLATQIGS 154 (226)
T ss_pred cCCCCCCCCCccHHHHHHHHHHHHHHhhhhhHHHH------HHHHHHC--CCCcccccCccCcCCHHHHHHHHHHHHHHh
Confidence 54431 11 1222222110000011111111 1233343 4443 3567788999999999999999999
Q ss_pred CC--CEEEEeCCCCCCCHHhHHHHHHHHHHHh-CCCeEEEEecCcchhhccCEEEEE------eCCEEEEec
Q 000984 540 DP--RILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRNADMIAVI------HRGKIVEKG 602 (1198)
Q Consensus 540 ~~--~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~~~d~i~~l------~~G~i~~~g 602 (1198)
+| +++||||||++||+.+...+.+.++++. ++.|+|+|||+++.+..||+|++| ++|+|+++|
T Consensus 155 ~p~~~llllDEPt~gLD~~~~~~l~~~l~~~~~~g~tii~itH~~~~~~~~d~i~~l~~~~~~~~G~iv~~g 226 (226)
T cd03270 155 GLTGVLYVLDEPSIGLHPRDNDRLIETLKRLRDLGNTVLVVEHDEDTIRAADHVIDIGPGAGVHGGEIVAQG 226 (226)
T ss_pred CCCCCEEEEeCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEEeCHHHHHhCCEEEEeCCCccccCCEEEecC
Confidence 98 5999999999999999999999998764 478999999999998889999999 999999886
|
Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. |
| >cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.3e-26 Score=252.92 Aligned_cols=193 Identities=25% Similarity=0.409 Sum_probs=141.0
Q ss_pred cccceeEEEeCCCEEEEEcCCCCcHHHHHHHHh-----ccC-----CCCCC-----------eEEECCeecCCcC---H-
Q 000984 401 IFSGFSISISSGTTAALVGQSGSGKSTVISLIE-----RFY-----DPQAG-----------EVLIDGINLKEFQ---L- 455 (1198)
Q Consensus 401 ~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~-----g~~-----~~~~G-----------~i~i~g~~~~~~~---~- 455 (1198)
.|+|++++|+.|.+++|+|+||||||||++.++ +.+ .|..+ -|.+|..++..-. +
T Consensus 10 nl~~v~~~ip~g~~~~vtGvSGsGKStL~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~vdq~pi~~~~rs~~~ 89 (261)
T cd03271 10 NLKNIDVDIPLGVLTCVTGVSGSGKSSLINDTLYPALARRLHLKKEQPGNHDRIEGLEHIDKVIVIDQSPIGRTPRSNPA 89 (261)
T ss_pred cCCCceeeccCCcEEEEECCCCCchHHHHHHHHHHHHHHHhcccccCCCcccccccccccCceEEecCCcCCCCCCCcHH
Confidence 699999999999999999999999999998653 111 12222 2556665553221 1
Q ss_pred ------HHHhc----------------ceEEEcCCCC-CCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCc
Q 000984 456 ------QWIRK----------------KIGLVSQEPV-LFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGI 512 (1198)
Q Consensus 456 ------~~~r~----------------~i~~v~Q~~~-l~~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~ 512 (1198)
+.+|+ .+.|..++.. +.+.|+.||+.|..... .+.+ ..+.++.+ |+
T Consensus 90 ty~~~~~~ir~~fC~~C~G~r~~~~~l~~~~~g~~i~~v~~ltv~e~~~~~~~~~---~~~~------~~~~L~~v--gL 158 (261)
T cd03271 90 TYTGVFDEIRELFCEVCKGKRYNRETLEVRYKGKSIADVLDMTVEEALEFFENIP---KIAR------KLQTLCDV--GL 158 (261)
T ss_pred HHHHHHHHHHHhcCccccccccCHHHHhcCcCCCCHHHHhcCCHHHHHHHHHhhh---hHHH------HHHHHHHc--CC
Confidence 11111 1344444443 33557777776532211 1111 12233333 66
Q ss_pred cc-hhcCCCCCCChHHHHHHhHHHhhccC---CCEEEEeCCCCCCCHHhHHHHHHHHHHHh-CCCeEEEEecCcchhhcc
Q 000984 513 DT-LVGEHGTQLSGGQKQRIAIARAILKD---PRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRNA 587 (1198)
Q Consensus 513 ~t-~v~~~g~~lSgGqkqri~lARal~~~---~~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~~~ 587 (1198)
+. ..++...+||||||||++|||||.++ |+++||||||++||++....+.+.++++. ++.|+|+|+|+++.+..|
T Consensus 159 ~~l~l~~~~~~LSgGe~QRl~LAraL~~~~~~p~lllLDEPtsgLD~~~~~~l~~~L~~l~~~g~tvIiitH~~~~i~~a 238 (261)
T cd03271 159 GYIKLGQPATTLSGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRLVDKGNTVVVIEHNLDVIKCA 238 (261)
T ss_pred chhhhcCccccCCHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhC
Confidence 65 47888899999999999999999996 79999999999999999999999998875 478999999999999999
Q ss_pred CEEEEE------eCCEEEEecCh
Q 000984 588 DMIAVI------HRGKIVEKGTH 604 (1198)
Q Consensus 588 d~i~~l------~~G~i~~~g~~ 604 (1198)
|+|++| ++|+|+++|++
T Consensus 239 D~ii~Lgp~~g~~~G~iv~~Gt~ 261 (261)
T cd03271 239 DWIIDLGPEGGDGGGQVVASGTP 261 (261)
T ss_pred CEEEEecCCcCCCCCEEEEeCCC
Confidence 999999 89999999975
|
Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases. |
| >PRK00635 excinuclease ABC subunit A; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.1e-25 Score=292.91 Aligned_cols=210 Identities=27% Similarity=0.379 Sum_probs=150.1
Q ss_pred cEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHH---------HHhccCCCCCC----e----EEE
Q 000984 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVIS---------LIERFYDPQAG----E----VLI 445 (1198)
Q Consensus 383 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~---------~l~g~~~~~~G----~----i~i 445 (1198)
.++++|++. ..|+|+|++|++||+++|+|+||||||||++ .|.|...+..+ . |.|
T Consensus 600 ~L~l~~~~~--------~~Lk~isl~Ip~Geiv~VtG~nGSGKSTLl~~~L~~~l~~~l~~~~~~~~~i~g~~i~~vi~i 671 (1809)
T PRK00635 600 TLTLSKATK--------HNLKDLTISLPLGRLTVVTGVSGSGKSSLINDTLVPAVEEFIEQGFCSNLSIQWGAISRLVHI 671 (1809)
T ss_pred eEEEecccc--------CCccceEEEEcCCcEEEEEcCCCCCHHHHHHHHHHHHHHHHhcCCCcccccccccccceeEEe
Confidence 478887751 2799999999999999999999999999999 55554322111 1 344
Q ss_pred CCeecCCcC----H------HHHh---------c-----ceEEEcCC------------------C--------------
Q 000984 446 DGINLKEFQ----L------QWIR---------K-----KIGLVSQE------------------P-------------- 469 (1198)
Q Consensus 446 ~g~~~~~~~----~------~~~r---------~-----~i~~v~Q~------------------~-------------- 469 (1198)
|-.++..-. . +++| + ...+.+|. |
T Consensus 672 dQspigr~~rS~~atY~g~fd~IR~lFA~~~~ak~~g~~~~~fsfn~~gG~C~~c~g~g~i~v~m~~~~v~c~~C~GkRy 751 (1809)
T PRK00635 672 TRDLPGRSQRSIPLTYIKAFDDLRELFAEQPRSKRLGLTKSHFSFNTPLGACAECQGLGSITTTDNRTSIPCPSCLGKRF 751 (1809)
T ss_pred cCCCCCCCCCCCceeehhhhHHHHHHHhhChHHHHcCCCcceeeecCCCCCCCcceeeEEEEEecCCceEECCccCCccc
Confidence 444433210 1 1333 1 11223332 1
Q ss_pred ------CCC-cccHHHHHhcCCCCC-----CHHHHHHHHHHhcHHHHHHhCCCCccch-hcCCCCCCChHHHHHHhHHHh
Q 000984 470 ------VLF-TGSIKDNIAYGKDDA-----TTEEIRVATELANAAKFIDKLPQGIDTL-VGEHGTQLSGGQKQRIAIARA 536 (1198)
Q Consensus 470 ------~l~-~~ti~~Ni~~~~~~~-----~~~~~~~~~~~~~~~~~i~~l~~g~~t~-v~~~g~~lSgGqkqri~lARa 536 (1198)
..+ .-||.||+.++..++ +.+++.+.+ +.++.+ |++.. .++...+||||||||++||||
T Consensus 752 ~~e~L~~~~~~~tI~evL~mtv~ea~~~f~~~~~i~~~l------~~L~~v--GL~~l~l~q~~~tLSGGE~QRV~LAra 823 (1809)
T PRK00635 752 LPQVLEVRYKGKNIADILEMTAYEAEKFFLDEPSIHEKI------HALCSL--GLDYLPLGRPLSSLSGGEIQRLKLAYE 823 (1809)
T ss_pred CHHHHhhccCCCCHHHHHHcCHHHHHHcccChHHHHHHH------HHHHHc--CCcchhhcCccccCCHHHHHHHHHHHH
Confidence 022 237888888753211 112222222 123333 77665 688889999999999999999
Q ss_pred hc---cCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh-CCCeEEEEecCcchhhccCEEEEEe------CCEEEEecChhh
Q 000984 537 IL---KDPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRNADMIAVIH------RGKIVEKGTHSK 606 (1198)
Q Consensus 537 l~---~~~~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~~~d~i~~l~------~G~i~~~g~~~~ 606 (1198)
|+ ++|++|||||||++||+.+.+.+.+.|+++. ++.|+|+|+|+++.+..||+|++|+ +|++++.|++++
T Consensus 824 L~~~~~~P~LLILDEPTsGLD~~~~~~Ll~lL~~L~~~G~TVIiIsHdl~~i~~aDrVi~L~p~gg~~~G~iv~~Gtpee 903 (1809)
T PRK00635 824 LLAPSKKPTLYVLDEPTTGLHTHDIKALIYVLQSLTHQGHTVVIIEHNMHVVKVADYVLELGPEGGNLGGYLLASCSPEE 903 (1809)
T ss_pred HhhcCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEEccCCCCCCCEEEEeCCHHH
Confidence 98 6999999999999999999999999998875 4789999999999998899999996 789999999887
Q ss_pred Hh
Q 000984 607 LV 608 (1198)
Q Consensus 607 l~ 608 (1198)
+.
T Consensus 904 l~ 905 (1809)
T PRK00635 904 LI 905 (1809)
T ss_pred HH
Confidence 64
|
|
| >cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.1e-26 Score=243.56 Aligned_cols=164 Identities=23% Similarity=0.297 Sum_probs=131.0
Q ss_pred cceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCC---------CeEEECCeecCCcCHHHHhcceEEEcCCCCCCc
Q 000984 403 SGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQA---------GEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFT 473 (1198)
Q Consensus 403 ~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~---------G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~~ 473 (1198)
+++++++++| +++|+||||||||||+++|.|+..+.. |++.++|.++... ..++++++++|+|..+
T Consensus 14 ~~~~l~~~~g-~~~i~G~nGsGKStll~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~v~~vfq~~~~~- 88 (197)
T cd03278 14 DKTTIPFPPG-LTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSETRKP---ANFAEVTLTFDNSDGR- 88 (197)
T ss_pred CCeeeecCCC-cEEEECCCCCCHHHHHHHHHHHhccccchhhcccCHHHHhccCCCCCCC---CceEEEEEEEEcCCCc-
Confidence 6789999999 999999999999999999999986653 4577777766432 2357899999999887
Q ss_pred ccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhhc----cCCCEEEEeCC
Q 000984 474 GSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAIL----KDPRILLLDEA 549 (1198)
Q Consensus 474 ~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal~----~~~~illlDe~ 549 (1198)
|+.. ..+++.++++. ++- .......||||||||++||||+. ++|+++|||||
T Consensus 89 --------~~~~--~~~~~~~~l~~----------~~~----~~~~~~~LS~G~kqrl~la~~l~~~~~~~~~illlDEP 144 (197)
T cd03278 89 --------YSII--SQGDVSEIIEA----------PGK----KVQRLSLLSGGEKALTALALLFAIFRVRPSPFCVLDEV 144 (197)
T ss_pred --------eeEE--ehhhHHHHHhC----------CCc----cccchhhcCHHHHHHHHHHHHHHHhccCCCCEEEEeCC
Confidence 2211 12333333322 211 23445679999999999999985 57799999999
Q ss_pred CCCCCHHhHHHHHHHHHHHhCCCeEEEEecCcchhhccCEEEEEeC
Q 000984 550 TSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHR 595 (1198)
Q Consensus 550 ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~~d~i~~l~~ 595 (1198)
|++||+.....+.+.++++.++.|+|+|||+++.+..||+++.+..
T Consensus 145 ~~~LD~~~~~~l~~~l~~~~~~~tiIiitH~~~~~~~~d~v~~~~~ 190 (197)
T cd03278 145 DAALDDANVERFARLLKEFSKETQFIVITHRKGTMEAADRLYGVTM 190 (197)
T ss_pred cccCCHHHHHHHHHHHHHhccCCEEEEEECCHHHHhhcceEEEEEe
Confidence 9999999999999999988778999999999999888999999853
|
Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w |
| >cd03289 ABCC_CFTR2 The CFTR subfamily domain 2 | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.4e-26 Score=255.15 Aligned_cols=132 Identities=27% Similarity=0.472 Sum_probs=122.8
Q ss_pred ccEEEeeeeEECCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHhh
Q 000984 1041 GEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQ 1120 (1198)
Q Consensus 1041 G~I~f~nVsf~Y~~~~~~~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~~i~l~~LR~~ 1120 (1198)
|+|+|+||+++|++. +.++|+|+||+|++||++|||||||||||||+++|+|+++ ++|+|+|||+|+.++++.++|++
T Consensus 1 g~i~~~nls~~~~~~-~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~-~~G~I~i~g~~i~~~~~~~lr~~ 78 (275)
T cd03289 1 GQMTVKDLTAKYTEG-GNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGDIQIDGVSWNSVPLQKWRKA 78 (275)
T ss_pred CeEEEEEEEEEeCCC-CCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEhhhCCHHHHhhh
Confidence 579999999999743 3469999999999999999999999999999999999998 78999999999999999999999
Q ss_pred cceeccccccccccHHHHHhcCCCCCCCHHHHHHHHHHcchHHHHHhcccccccee
Q 000984 1121 MGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQVRTSRL 1176 (1198)
Q Consensus 1121 IsiV~Qdp~LF~gTIreNI~~g~~~~~tdeei~~Al~~A~l~dfI~~LP~g~dt~v 1176 (1198)
|++|||+|.+|++|+++||++. ...++++++++++.+++++++.++|++|||.+
T Consensus 79 i~~v~q~~~lf~~tv~~nl~~~--~~~~~~~~~~~l~~~gL~~~~~~~p~~l~~~~ 132 (275)
T cd03289 79 FGVIPQKVFIFSGTFRKNLDPY--GKWSDEEIWKVAEEVGLKSVIEQFPGQLDFVL 132 (275)
T ss_pred EEEECCCcccchhhHHHHhhhc--cCCCHHHHHHHHHHcCCHHHHHhCccccccee
Confidence 9999999999999999999743 13678999999999999999999999999987
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.93 E-value=5.7e-26 Score=253.99 Aligned_cols=197 Identities=27% Similarity=0.349 Sum_probs=135.0
Q ss_pred ccEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcc
Q 000984 382 GDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKK 461 (1198)
Q Consensus 382 g~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~ 461 (1198)
.+|...+.+.+|++ +.+|.+-++++..|-.+|+|||||+|||||+++|.. |.|.+-.++ +++|.-
T Consensus 79 ~Di~~~~fdLa~G~---k~LL~~a~L~L~~GrRYGLvGrNG~GKsTLLRaia~------~~v~~f~ve------qE~~g~ 143 (582)
T KOG0062|consen 79 KDIHIDNFDLAYGG---KILLNKANLTLSRGRRYGLVGRNGIGKSTLLRAIAN------GQVSGFHVE------QEVRGD 143 (582)
T ss_pred cceeeeeeeeeecc---hhhhcCCceeeecccccceeCCCCCcHHHHHHHHHh------cCcCccCch------hheecc
Confidence 46889999999974 469999999999999999999999999999999998 444322210 000000
Q ss_pred eEEEcCCCCCCcccHHHHHhcCCCCC----CHHHHHH-HHHHhcHHHHHHhCCCCccchhcCC-CCCCChHHHHHHhHHH
Q 000984 462 IGLVSQEPVLFTGSIKDNIAYGKDDA----TTEEIRV-ATELANAAKFIDKLPQGIDTLVGEH-GTQLSGGQKQRIAIAR 535 (1198)
Q Consensus 462 i~~v~Q~~~l~~~ti~~Ni~~~~~~~----~~~~~~~-~~~~~~~~~~i~~l~~g~~t~v~~~-g~~lSgGqkqri~lAR 535 (1198)
-....| ..+-.++-|.-+..-.+.. +.+++.. ++.-. |...+.-.+ -..||||=|=|++|||
T Consensus 144 ~t~~~~-~~l~~D~~~~dfl~~e~~l~~~~~l~ei~~~~L~gl-----------GFt~emq~~pt~slSGGWrMrlaLAR 211 (582)
T KOG0062|consen 144 DTEALQ-SVLESDTERLDFLAEEKELLAGLTLEEIYDKILAGL-----------GFTPEMQLQPTKSLSGGWRMRLALAR 211 (582)
T ss_pred chHHHh-hhhhccHHHHHHHHhhhhhhccchHHHHHHHHHHhC-----------CCCHHHHhccccccCcchhhHHHHHH
Confidence 000001 0122334444433211000 1122222 33333 333333222 3469999999999999
Q ss_pred hhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhCCCeEEEEecCcchhhc-cCEEEEEeCCEEE-EecChhhH
Q 000984 536 AILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRN-ADMIAVIHRGKIV-EKGTHSKL 607 (1198)
Q Consensus 536 al~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~-~~g~~~~l 607 (1198)
||+.+||||||||||+.||..+-.++.+.|..+ ..|+|+|+|+-+++.. |.-|+.+++-++- +.|++++.
T Consensus 212 Alf~~pDlLLLDEPTNhLDv~av~WLe~yL~t~--~~T~liVSHDr~FLn~V~tdIIH~~~~kL~~YkGN~~~F 283 (582)
T KOG0062|consen 212 ALFAKPDLLLLDEPTNHLDVVAVAWLENYLQTW--KITSLIVSHDRNFLNTVCTDIIHLENLKLDYYKGNYSQF 283 (582)
T ss_pred HHhcCCCEEeecCCcccchhHHHHHHHHHHhhC--CceEEEEeccHHHHHHHHHHHHHHhhhhhhhhcCcHHHH
Confidence 999999999999999999999999999999876 3899999999999987 8889998876653 44444444
|
|
| >COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.2e-25 Score=212.21 Aligned_cols=202 Identities=27% Similarity=0.359 Sum_probs=142.4
Q ss_pred EEEEeEEEEcCC----CCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECC----eecCCcCH
Q 000984 384 IELRDVYFSYPA----RPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDG----INLKEFQL 455 (1198)
Q Consensus 384 i~~~~v~~~y~~----~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g----~~~~~~~~ 455 (1198)
+.++|++.++-- .-.-|+++|+||+++.||++++-||||+|||||+++|.+-|.|++|+|.+.- +|+..-.+
T Consensus 5 l~v~~~~KtFtlH~q~Gi~LpV~~~vslsV~aGECvvL~G~SG~GKStllr~LYaNY~~d~G~I~v~H~g~~vdl~~a~p 84 (235)
T COG4778 5 LNVSNVSKTFTLHQQGGVRLPVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQILVRHEGEWVDLVTAEP 84 (235)
T ss_pred eeeecchhheEeeecCCEEeeeeeceeEEecCccEEEeeCCCCCcHHHHHHHHHhccCCCCceEEEEeCcchhhhhccCh
Confidence 566777655521 1124799999999999999999999999999999999999999999998843 34444443
Q ss_pred HH----HhcceEEEcCCCCCC-cc----cHHHHHh-cCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCCh
Q 000984 456 QW----IRKKIGLVSQEPVLF-TG----SIKDNIA-YGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSG 525 (1198)
Q Consensus 456 ~~----~r~~i~~v~Q~~~l~-~~----ti~~Ni~-~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSg 525 (1198)
.+ .|+.||||+|---.. .- -+.|-+. .|-+ .+....++.. +... -++|..+... ...++||
T Consensus 85 r~vl~vRr~TiGyVSQFLRviPRV~aLdVvaePll~~gv~--~~~a~~~a~~---Ll~r-LnlperLW~L---aPaTFSG 155 (235)
T COG4778 85 REVLEVRRTTIGYVSQFLRVIPRVSALDVVAEPLLARGVP--REVARAKAAD---LLTR-LNLPERLWSL---APATFSG 155 (235)
T ss_pred HHHHHHHHhhhHHHHHHHHhccCcchHHHHHhHHHHcCCC--HHHHHHHHHH---HHHH-cCCCHHHhcC---CCcccCC
Confidence 33 356799999953211 11 1223222 1221 1111111111 1111 1334333322 3468999
Q ss_pred HHHHHHhHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh-CCCeEEEEecCcchhhc-cCEEEEEe
Q 000984 526 GQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRN-ADMIAVIH 594 (1198)
Q Consensus 526 Gqkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~ 594 (1198)
|++||+.|||.+.-|-+||+|||||++||+.+.+.+.+.|.+.+ ++..+|=|=|+-+.=.. |||++-|.
T Consensus 156 GEqQRVNIaRgfivd~pILLLDEPTasLDa~Nr~vVveli~e~Ka~GaAlvGIFHDeevre~vadR~~~~~ 226 (235)
T COG4778 156 GEQQRVNIARGFIVDYPILLLDEPTASLDATNRAVVVELIREAKARGAALVGIFHDEEVREAVADRLLDVS 226 (235)
T ss_pred chheehhhhhhhhccCceEEecCCcccccccchHHHHHHHHHHHhcCceEEEeeccHHHHHHHhhheeecc
Confidence 99999999999999999999999999999999999999998765 56788889999876544 89988774
|
|
| >KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=99.92 E-value=6.9e-25 Score=280.38 Aligned_cols=216 Identities=22% Similarity=0.414 Sum_probs=183.5
Q ss_pred ccEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCc-CHHHHhc
Q 000984 382 GDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEF-QLQWIRK 460 (1198)
Q Consensus 382 g~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~-~~~~~r~ 460 (1198)
..+..+|++..|+.+.. +.+++|+.+++||+.|+.|+|||||||++++|.|+..|++|++.++|.+++.- +..+.++
T Consensus 563 ~~~~~~~L~k~y~~~~~--Av~~ls~~V~~gecfgLLG~NGAGKtT~f~mltG~~~~t~G~a~i~g~~i~~~~~~~~~~~ 640 (885)
T KOG0059|consen 563 SALVLNNLSKVYGGKDG--AVRGLSFAVPPGECFGLLGVNGAGKTTTFKMLTGETKPTSGEALIKGHDITVSTDFQQVRK 640 (885)
T ss_pred ceEEEcceeeeecchhh--hhcceEEEecCCceEEEecCCCCCchhhHHHHhCCccCCcceEEEecCccccccchhhhhh
Confidence 35889999999976532 89999999999999999999999999999999999999999999999999754 5566899
Q ss_pred ceEEEcCCCCCCc-ccHHHHHhcC-----CCCCC-HHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhH
Q 000984 461 KIGLVSQEPVLFT-GSIKDNIAYG-----KDDAT-TEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAI 533 (1198)
Q Consensus 461 ~i~~v~Q~~~l~~-~ti~~Ni~~~-----~~~~~-~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~l 533 (1198)
++|||||+..++. -|.||.+.+. .+..+ .+.+...++..++.+. .++ ...++|||+|.|+++
T Consensus 641 ~iGyCPQ~d~l~~~lT~rEhL~~~arlrG~~~~di~~~v~~ll~~~~L~~~-------~~~----~~~~ySgG~kRkLs~ 709 (885)
T KOG0059|consen 641 QLGYCPQFDALWEELTGREHLEFYARLRGLPRSDIGSAIEKLLRLVGLGPY-------ANK----QVRTYSGGNKRRLSF 709 (885)
T ss_pred hcccCCchhhhhhhccHHHHHHHHHHHcCCChhHHHHHHHHHHHHcCChhh-------hcc----chhhCCCcchhhHHH
Confidence 9999999998884 6999999763 22111 1234444444444332 223 345899999999999
Q ss_pred HHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhCCC-eEEEEecCcchhhc-cCEEEEEeCCEEEEecChhhHhcC
Q 000984 534 ARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNR-TTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVED 610 (1198)
Q Consensus 534 ARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~-t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 610 (1198)
|-|++.+|++++|||||+++||.+.+.+.+.|.+..++. .+|+.||.++..+. |||+.+|.+|++..-|++++|..+
T Consensus 710 aialig~p~vi~LDEPstGmDP~arr~lW~ii~~~~k~g~aiiLTSHsMeE~EaLCtR~aImv~G~l~ciGs~q~LKsr 788 (885)
T KOG0059|consen 710 AIALIGDPSVILLDEPSTGLDPKARRHLWDIIARLRKNGKAIILTSHSMEEAEALCTRTAIMVIGQLRCIGSPQELKSR 788 (885)
T ss_pred HHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHHhhhhheeecCeeEEecChHHHHhh
Confidence 999999999999999999999999999999999988754 99999999999986 999999999999999999999654
|
|
| >cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends | Back alignment and domain information |
|---|
Probab=99.91 E-value=6.7e-25 Score=236.27 Aligned_cols=192 Identities=19% Similarity=0.192 Sum_probs=139.9
Q ss_pred cEEEEeEEEEcCCCCCCccccceeEEEe-CCCEEEEEcCCCCcHHHHHHHHhc-cCCCCCCeEEECCeecCCcCHHHHhc
Q 000984 383 DIELRDVYFSYPARPNEQIFSGFSISIS-SGTTAALVGQSGSGKSTVISLIER-FYDPQAGEVLIDGINLKEFQLQWIRK 460 (1198)
Q Consensus 383 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~-~g~~~~ivG~~GsGKStl~~~l~g-~~~~~~G~i~i~g~~~~~~~~~~~r~ 460 (1198)
.|+++|.. +|..+ ++++|+.. +|++++|+||||||||||+++|.+ ++.+..+....+ .....+.....+.
T Consensus 5 ~i~l~nf~-~y~~~------~~i~~~~~~~~~~~~i~G~NGsGKSTll~~i~~~l~g~~~~~~~~~-~~~~~~~~~~~~~ 76 (213)
T cd03279 5 KLELKNFG-PFREE------QVIDFTGLDNNGLFLICGPTGAGKSTILDAITYALYGKTPRYGRQE-NLRSVFAPGEDTA 76 (213)
T ss_pred EEEEECCc-CcCCc------eEEeCCCCCccCEEEEECCCCCCHHHHHHHheeeEecCccccccch-hHHHHhcCCCccE
Confidence 48889988 66422 46677654 589999999999999999999995 555555555443 1222333344567
Q ss_pred ceEEEcCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCC-CccchhcCCCCCCChHHHHHHhHHHhhcc
Q 000984 461 KIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQ-GIDTLVGEHGTQLSGGQKQRIAIARAILK 539 (1198)
Q Consensus 461 ~i~~v~Q~~~l~~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~-g~~t~v~~~g~~lSgGqkqri~lARal~~ 539 (1198)
.|++++|++.-.-...| ++ ..+.++..+... ++. ++++.+...+.+||||||||++||||++.
T Consensus 77 ~v~~~f~~~~~~~~~~r----~~--gl~~~~~~~~~~----------l~~g~l~~~l~~~~~~lS~G~~~r~~la~al~~ 140 (213)
T cd03279 77 EVSFTFQLGGKKYRVER----SR--GLDYDQFTRIVL----------LPQGEFDRFLARPVSTLSGGETFLASLSLALAL 140 (213)
T ss_pred EEEEEEEECCeEEEEEE----ec--CCCHHHHHHhhh----------hhhcchHHHhcCCccccCHHHHHHHHHHHHHHh
Confidence 89999999843222222 11 233343332210 111 35566677888999999999999999974
Q ss_pred ----------CCCEEEEeCCCCCCCHHhHHHHHHHHHHHhC-CCeEEEEecCcchhhc-cCEEEEEeCCEE
Q 000984 540 ----------DPRILLLDEATSALDAESEKVVQEALDRIMV-NRTTVIVAHRLSTVRN-ADMIAVIHRGKI 598 (1198)
Q Consensus 540 ----------~~~illlDe~ts~lD~~~~~~i~~~i~~~~~-~~t~i~itH~~~~~~~-~d~i~~l~~G~i 598 (1198)
+|+++||||||++||+.+.+.+.+.+.++.+ ++|+|+|||+++.+.. +|+++++++|.+
T Consensus 141 ~p~~~~~~~~~~~~lllDEp~~~lD~~~~~~~~~~l~~~~~~~~tii~itH~~~~~~~~~~~i~~~~~~~~ 211 (213)
T cd03279 141 SEVLQNRGGARLEALFIDEGFGTLDPEALEAVATALELIRTENRMVGVISHVEELKERIPQRLEVIKTPGG 211 (213)
T ss_pred HHHhhhccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECchHHHHhhCcEEEEEecCCC
Confidence 6789999999999999999999999988765 7899999999998876 899999998853
|
They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini. |
| >PF00664 ABC_membrane: ABC transporter transmembrane region; InterPro: IPR001140 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.4e-21 Score=218.71 Aligned_cols=273 Identities=21% Similarity=0.342 Sum_probs=233.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000984 722 LAGTIAAMANGVILPIYGLLISSVIETFFKPPHELKKDSRFWALIYLALGAGSFLLSPAQSYFFAVAGNKLIQRIRSMCF 801 (1198)
Q Consensus 722 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~~l~ 801 (1198)
++++++.++.++..+..+++++.+++...............+...++++.++...+.....+...+.+.+...++|.+++
T Consensus 2 ~l~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 81 (275)
T PF00664_consen 2 FLAILLSILSGLLSLLFPLLLGQIIDSLSSGNSDNNSSLISLAFLLIAIFLLIFLFSYIYFYLSSRISQRIRKDLRKRLF 81 (275)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666777777778899999998754322111111122222233334444555555666678899999999999999
Q ss_pred HHHHhCcccccccCCCChhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 000984 802 EKVIHMEVSWFDEPEHSSGAIGARLSADAASVRALVGDALARIVQNISTAAAGLIIAFTASWQLALIILVMLPLIGVSGY 881 (1198)
Q Consensus 802 ~~ll~~p~~fFd~~~~~~G~i~~r~s~D~~~i~~~l~~~l~~~i~~~~~~i~~li~~~~~~~~l~l~~l~~~pl~~~~~~ 881 (1198)
+|+++.|.+||+ ++++|++++|+++|++.+++.+...+..++..+..+++.+++++.++|+++++++++.|+..++..
T Consensus 82 ~~~~~~~~~~~~--~~~~g~l~~~i~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~l~~l~~~~~~~~~~~ 159 (275)
T PF00664_consen 82 EKLLRLPYSYFD--KNSSGELLSRITNDIEQIENFLSSSLFQIISSIISIIFSLILLFFISWKLALILLIILPLLFLISF 159 (275)
T ss_dssp HHHHHSHHHHHH--HS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhhhhh--hhcccccccccccccccccccccccccccccccchhhhhhhcccccccccccccchhhhhhHhhhh
Confidence 999999999999 589999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHhchhHHHHHhcchHHHHHHHHHHhhhHHHHhHHHHHHHhhHHHHHHHHHHHHH
Q 000984 882 TQMKFMKGFSADAKMKYEEASQVANDAVGSIRTVASFCAEEKVMQLYKKKCEAPMKTGIRQGMVSGGGFGASFFLLFAFY 961 (1198)
Q Consensus 882 ~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 961 (1198)
...++.++..++.++..++..+.+.|.++|+++||+|+.|+++.++|++..++..+...+.........+....+..+..
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (275)
T PF00664_consen 160 IFSKKIRKLSKKYQEANSELNSFLSESLSGIRTIKAFGAEDYFLERFNKALEKYRKASFKYAKIQALLSSISQFISYLSI 239 (275)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhccccccccccccccccccccccccchhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999998999988888889
Q ss_pred HHHHHHHHHH-HhcCCcCHHHHHHHHHHHHHHHHHH
Q 000984 962 AASFYAGARL-VEDGKATFSDVFKVFFSLTMTAIGI 996 (1198)
Q Consensus 962 ~~~~~~g~~l-~~~g~~t~g~l~~~~~~~~~~~~~l 996 (1198)
++++++|+++ +.+|.+++|+++++..+......|+
T Consensus 240 ~~~~~~g~~~~~~~g~~s~g~~~~~~~~~~~~~~pl 275 (275)
T PF00664_consen 240 VLILIFGAYLSVINGQISIGTLVAFLSLSSQLINPL 275 (275)
T ss_dssp HHHHHHHHHH-HCTTSSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHhhC
Confidence 9999999999 9999999999999999988887774
|
ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). A variety of ATP-binding transport proteins have a six transmembrane helical region. They are all integral membrane proteins involved in a variety of transport systems. Members of this family include; the cystic fibrosis transmembrane conductance regulator (CFTR), bacterial leukotoxin secretion ATP-binding protein, multidrug resistance proteins, the yeast leptomycin B resistance protein, the mammalian sulphonylurea receptor and antigen peptide transporter 2. Many of these proteins have two such regions.; GO: 0005524 ATP binding, 0042626 ATPase activity, coupled to transmembrane movement of substances, 0006810 transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 3G61_B 3G5U_B 3G60_A 3B60_D 3QF4_B 2HYD_A 2ONJ_A 4A82_B 4AA3_A 2YL4_A. |
| >cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.2e-24 Score=238.18 Aligned_cols=191 Identities=25% Similarity=0.340 Sum_probs=130.5
Q ss_pred EEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcc----------------CCCCCC------
Q 000984 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERF----------------YDPQAG------ 441 (1198)
Q Consensus 384 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~----------------~~~~~G------ 441 (1198)
|+++|.. +|. +..++++++ |++++|+||||||||||+++|.+. +.+.+|
T Consensus 4 i~~~nfk-sy~---~~~~~~~~~-----~~~~~i~GpNGsGKStll~ai~~~l~~~~~~~~~~~~~~li~~~~~~~~~~~ 74 (243)
T cd03272 4 VIIQGFK-SYK---DQTVIEPFS-----PKHNVVVGRNGSGKSNFFAAIRFVLSDEYTHLREEQRQALLHEGSGPSVMSA 74 (243)
T ss_pred EEEeCcc-Ccc---cCcccccCC-----CCcEEEECCCCCCHHHHHHHHHHHHcCchhhhhhhhHHHhEeCCCCCCCceE
Confidence 5666532 353 234777776 889999999999999999999844 334444
Q ss_pred --eEEECCeecC-Cc--CHHHHhcceEEEcCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHH--HhCCCC---
Q 000984 442 --EVLIDGINLK-EF--QLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFI--DKLPQG--- 511 (1198)
Q Consensus 442 --~i~i~g~~~~-~~--~~~~~r~~i~~v~Q~~~l~~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i--~~l~~g--- 511 (1198)
+|.+++.+-. .+ ....+++++++++|++.++.. ..+.++++..++..++...- ..+|+|
T Consensus 75 ~v~i~~~~~~~~~~~~~~~~~i~r~ig~~~~~~~l~~~-----------~~t~~ei~~~l~~~gl~~~~~~~~~~qg~i~ 143 (243)
T cd03272 75 YVEIIFDNSDNRFPIDKEEVRLRRTIGLKKDEYFLDKK-----------NVTKNDVMNLLESAGFSRSNPYYIVPQGKIN 143 (243)
T ss_pred EEEEEEEcCCCccCCCCCEEEEEEEEECCCCEEEECCe-----------EcCHHHHHHHHHHcCCCCCCCcEEEEcCchH
Confidence 4444442211 00 122345667888877765431 12334444444443322100 001112
Q ss_pred ----ccchhcCCCCCCChHHHHHHhHHHhhc----cCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhCCCeEEEEecCcch
Q 000984 512 ----IDTLVGEHGTQLSGGQKQRIAIARAIL----KDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLST 583 (1198)
Q Consensus 512 ----~~t~v~~~g~~lSgGqkqri~lARal~----~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~ 583 (1198)
+....++.+.+||||||||++||||++ ++|+++||||||++||+.+.+.+.+.++++.+++|+|+++|+.+.
T Consensus 144 ~l~~l~~~~~~~~~~lS~G~~~r~~la~~l~~~~~~~~~illlDEp~~~ld~~~~~~~~~~l~~~~~~~~ii~~~h~~~~ 223 (243)
T cd03272 144 SLTNMKQDEQQEMQQLSGGQKSLVALALIFAIQKCDPAPFYLFDEIDAALDAQYRTAVANMIKELSDGAQFITTTFRPEL 223 (243)
T ss_pred HhhhccccccccccccCHHHHHHHHHHHHHHHhccCCCCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEecCHHH
Confidence 122345677899999999999999996 468999999999999999999999999988777888888999887
Q ss_pred hhccCEEEEEe
Q 000984 584 VRNADMIAVIH 594 (1198)
Q Consensus 584 ~~~~d~i~~l~ 594 (1198)
...||++++|+
T Consensus 224 ~~~~d~i~~l~ 234 (243)
T cd03272 224 LEVADKFYGVK 234 (243)
T ss_pred HhhCCEEEEEE
Confidence 77899999995
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo |
| >COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.1e-24 Score=210.24 Aligned_cols=208 Identities=25% Similarity=0.407 Sum_probs=172.7
Q ss_pred EEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcceE
Q 000984 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIG 463 (1198)
Q Consensus 384 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~ 463 (1198)
+.++||+..- -|-.+|..+..||..-+|||+|||||||+..+.|+. |-+|+|.++|.++.....+++.++=+
T Consensus 4 ~qln~v~~~t-------RL~plS~qv~aGe~~HliGPNGaGKSTLLA~lAGm~-~~sGsi~~~G~~l~~~~~~eLArhRA 75 (248)
T COG4138 4 MQLNDVAEST-------RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGSGSIQFAGQPLEAWSATELARHRA 75 (248)
T ss_pred eeeccccccc-------cccccccccccceEEEEECCCCccHHHHHHHHhCCC-CCCceEEECCcchhHHhHhHHHHHHH
Confidence 4566665431 356788999999999999999999999999999987 78899999999999999999999999
Q ss_pred EEcCCC-CCCcccHHHHHhcCCCCCC-HHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhhcc--
Q 000984 464 LVSQEP-VLFTGSIKDNIAYGKDDAT-TEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILK-- 539 (1198)
Q Consensus 464 ~v~Q~~-~l~~~ti~~Ni~~~~~~~~-~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal~~-- 539 (1198)
|..|+. ..|...|..-+.+..|+.+ .+++..+|++- +++..+++.-..||||+-||+-||-.+++
T Consensus 76 YLsQqq~p~f~mpV~~YL~L~qP~~~~a~~i~~i~~~L-----------~l~DKL~Rs~~qLSGGEWQRVRLAav~LQv~ 144 (248)
T COG4138 76 YLSQQQTPPFAMPVWHYLTLHQPDKTRTELLNDVAGAL-----------ALDDKLGRSTNQLSGGEWQRVRLAAVVLQIT 144 (248)
T ss_pred HHhhccCCcchhhhhhhhhhcCchHHHHHHHHHHHhhh-----------cccchhhhhhhhcCcccceeeEEeEEEEEec
Confidence 998865 5788888888887666421 12333333333 45556677778999999999999998886
Q ss_pred -----CCCEEEEeCCCCCCCHHhHHHHHHHHHHHh-CCCeEEEEecCcc-hhhccCEEEEEeCCEEEEecChhhHhcC
Q 000984 540 -----DPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLS-TVRNADMIAVIHRGKIVEKGTHSKLVED 610 (1198)
Q Consensus 540 -----~~~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~-~~~~~d~i~~l~~G~i~~~g~~~~l~~~ 610 (1198)
..++||+|||-++||...+..+.+.+.+++ ++.+||+..|+++ ++++||++..+..|++..+|..+|.+..
T Consensus 145 Pd~NP~~~LLllDEP~~~LDvAQ~~aLdrll~~~c~~G~~vims~HDLNhTLrhA~~~wLL~rG~l~~~G~~~eVlt~ 222 (248)
T COG4138 145 PDANPAGQLLLLDEPMNSLDVAQQSALDRLLSALCQQGLAIVMSSHDLNHTLRHAHRAWLLKRGKLLASGRREEVLTP 222 (248)
T ss_pred CCCCccceeEEecCCCcchhHHHHHHHHHHHHHHHhCCcEEEEeccchhhHHHHHHHHHHHhcCeEEeecchhhhcCh
Confidence 357999999999999998888888887776 5799999999997 6899999999999999999999998754
|
|
| >KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.3e-24 Score=242.56 Aligned_cols=198 Identities=29% Similarity=0.394 Sum_probs=165.1
Q ss_pred cEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcce
Q 000984 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKI 462 (1198)
Q Consensus 383 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i 462 (1198)
.|.++||+|.|++. +.++++++|-|.+++.+++|||||||||||++++.|.+.|..|.|.-.-+. ++
T Consensus 389 vi~~~nv~F~y~~~--~~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~p~~G~vs~~~H~-----------~~ 455 (614)
T KOG0927|consen 389 VIMVQNVSFGYSDN--PMIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQPTIGMVSRHSHN-----------KL 455 (614)
T ss_pred eEEEeccccCCCCc--chhhhhhhcccCcccceeEecCCCCchhhhHHHHhhccccccccccccccc-----------cc
Confidence 58999999999754 379999999999999999999999999999999999999999998765432 46
Q ss_pred EEEcCCC---CCCcccHHHHHhcCCCC-CCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhhc
Q 000984 463 GLVSQEP---VLFTGSIKDNIAYGKDD-ATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAIL 538 (1198)
Q Consensus 463 ~~v~Q~~---~l~~~ti~~Ni~~~~~~-~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal~ 538 (1198)
++-.|+- .-+..|.-+++.--.++ -..+++...+..+++..+.+..| -.+||+|||.||+.||.++
T Consensus 456 ~~y~Qh~~e~ldl~~s~le~~~~~~~~~~~~e~~r~ilgrfgLtgd~q~~p----------~~~LS~Gqr~rVlFa~l~~ 525 (614)
T KOG0927|consen 456 PRYNQHLAEQLDLDKSSLEFMMPKFPDEKELEEMRSILGRFGLTGDAQVVP----------MSQLSDGQRRRVLFARLAV 525 (614)
T ss_pred hhhhhhhHhhcCcchhHHHHHHHhccccchHHHHHHHHHHhCCCccccccc----------hhhcccccchhHHHHHHHh
Confidence 6666654 34567888888754453 45677888888888765543333 2489999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhCCCeEEEEecCcchhhc-cCEEEEEeCCEEE-EecChh
Q 000984 539 KDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRN-ADMIAVIHRGKIV-EKGTHS 605 (1198)
Q Consensus 539 ~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~-~~g~~~ 605 (1198)
+.|.+|+|||||++||.++...+.++|.++ ..+||+|+|+...+.+ +++|.+.++|.+. ..|.+.
T Consensus 526 kqP~lLlLDEPtnhLDi~tid~laeaiNe~--~Ggvv~vSHDfrlI~qVaeEi~~c~~~~~~~~~G~i~ 592 (614)
T KOG0927|consen 526 KQPHLLLLDEPTNHLDIETIDALAEAINEF--PGGVVLVSHDFRLISQVAEEIWVCENGTVTKWDGDIE 592 (614)
T ss_pred cCCcEEEecCCCcCCCchhHHHHHHHHhcc--CCceeeeechhhHHHHHHHHhHhhccCceeecCccHH
Confidence 999999999999999999999999999886 5689999999999987 8999999999876 345443
|
|
| >COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.2e-23 Score=238.96 Aligned_cols=213 Identities=23% Similarity=0.375 Sum_probs=169.2
Q ss_pred cEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcC-HHHHhcc
Q 000984 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQ-LQWIRKK 461 (1198)
Q Consensus 383 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~-~~~~r~~ 461 (1198)
.++++|++.. ..++|+||++++||+++|.|-.|||+|-|+++|+|.-++.+|+|.+||.++.-.+ .+.++..
T Consensus 263 ~l~v~~l~~~-------~~~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~~~~~G~i~l~G~~v~~~sp~~Ai~~G 335 (500)
T COG1129 263 VLEVRNLSGG-------GKVRDVSFTVRAGEILGIAGLVGAGRTELARALFGARPASSGEILLDGKPVRIRSPRDAIKAG 335 (500)
T ss_pred EEEEecCCCC-------CceeCceeEEeCCcEEEEeccccCCHHHHHHHHhCCCcCCCceEEECCEEccCCCHHHHHHcC
Confidence 3667776532 1578999999999999999999999999999999988899999999999988766 4578889
Q ss_pred eEEEcCCCC---C-CcccHHHHHhcCC-CCCCHH-HHHHHHHHhcHHHHHHhCCCCccch-hcCCCCCCChHHHHHHhHH
Q 000984 462 IGLVSQEPV---L-FTGSIKDNIAYGK-DDATTE-EIRVATELANAAKFIDKLPQGIDTL-VGEHGTQLSGGQKQRIAIA 534 (1198)
Q Consensus 462 i~~v~Q~~~---l-~~~ti~~Ni~~~~-~~~~~~-~~~~~~~~~~~~~~i~~l~~g~~t~-v~~~g~~lSgGqkqri~lA 534 (1198)
|+|||.|-- + ...+|++|+.+.. ...... .+....+.....+++..| +..+. ......+||||-+|++.||
T Consensus 336 i~~v~EDRk~~Gl~l~~sI~~Ni~l~~l~~~~~~~~i~~~~e~~~~~~~~~~l--~Ik~~s~~~~v~~LSGGNQQKVvla 413 (500)
T COG1129 336 IAYVPEDRKSEGLVLDMSIAENITLASLRRFSRRGLIDRRKERALAERYIRRL--RIKTPSPEQPIGTLSGGNQQKVVLA 413 (500)
T ss_pred CEeCCcccccCcCcCCCcHHHheehHhhhhhccccccChHHHHHHHHHHHHhc--CcccCCccchhhcCCchhhhhHHHH
Confidence 999999863 4 4679999998751 111100 233333333444556555 22221 2234467999999999999
Q ss_pred HhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh-CCCeEEEEecCcchhh-ccCEEEEEeCCEEEEecCh
Q 000984 535 RAILKDPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKGTH 604 (1198)
Q Consensus 535 Ral~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~-~~d~i~~l~~G~i~~~g~~ 604 (1198)
|.|+.+|++|||||||-++|.-+...|.+.|+++. +++++|+||..+..+. .||||+||.+|+|+..=+.
T Consensus 414 rwL~~~p~vLilDEPTRGIDVGAK~eIy~li~~lA~~G~ail~iSSElpEll~~~DRIlVm~~Gri~~e~~~ 485 (500)
T COG1129 414 RWLATDPKVLILDEPTRGIDVGAKAEIYRLIRELAAEGKAILMISSELPELLGLSDRILVMREGRIVGELDR 485 (500)
T ss_pred HHHhcCCCEEEECCCCcCcccchHHHHHHHHHHHHHCCCEEEEEeCChHHHHhhCCEEEEEECCEEEEEecc
Confidence 99999999999999999999999999999999875 5799999999998775 6999999999999864333
|
|
| >cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.2e-23 Score=224.13 Aligned_cols=163 Identities=24% Similarity=0.292 Sum_probs=128.0
Q ss_pred eeEEEeCCCEEEEEcCCCCcHHHHHHHHh----ccCCCCCCeEEECCeecCCcCHHHHhcceEEEcCCC-----CCCc-c
Q 000984 405 FSISISSGTTAALVGQSGSGKSTVISLIE----RFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEP-----VLFT-G 474 (1198)
Q Consensus 405 i~l~i~~g~~~~ivG~~GsGKStl~~~l~----g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~-----~l~~-~ 474 (1198)
.++++.+| +++|+||||||||||+.+|. |...|..|.+..+...+ .....+..+++++|++ .++. -
T Consensus 16 ~~l~~~~g-~~~i~G~NGsGKTTLl~ai~~~l~G~~~~~~~~~~~~~~~i---~~~~~~~~v~~~f~~~~~~~~~v~r~~ 91 (204)
T cd03240 16 SEIEFFSP-LTLIVGQNGAGKTTIIEALKYALTGELPPNSKGGAHDPKLI---REGEVRAQVKLAFENANGKKYTITRSL 91 (204)
T ss_pred eEEecCCC-eEEEECCCCCCHHHHHHHHHHHHcCCCCcccccccchHHHH---hCCCCcEEEEEEEEeCCCCEEEEEEEh
Confidence 34667777 99999999999999999994 98888887765222111 2223456899999998 3332 3
Q ss_pred cHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHH------HhHHHhhccCCCEEEEeC
Q 000984 475 SIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQR------IAIARAILKDPRILLLDE 548 (1198)
Q Consensus 475 ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqr------i~lARal~~~~~illlDe 548 (1198)
|+.+|+.++. .+++.. . +.+....||+||||| ++||||+..+|+++||||
T Consensus 92 ~~~~~~~~~~----~~~~~~---------~-----------~~~~~~~LS~G~~~~~~la~rlala~al~~~p~illlDE 147 (204)
T cd03240 92 AILENVIFCH----QGESNW---------P-----------LLDMRGRCSGGEKVLASLIIRLALAETFGSNCGILALDE 147 (204)
T ss_pred hHhhceeeec----hHHHHH---------H-----------HhcCccccCccHHHHHHHHHHHHHHHHhccCCCEEEEcC
Confidence 9999998642 222211 1 145567899999996 799999999999999999
Q ss_pred CCCCCCHHhHH-HHHHHHHHHhC--CCeEEEEecCcchhhccCEEEEEeC
Q 000984 549 ATSALDAESEK-VVQEALDRIMV--NRTTVIVAHRLSTVRNADMIAVIHR 595 (1198)
Q Consensus 549 ~ts~lD~~~~~-~i~~~i~~~~~--~~t~i~itH~~~~~~~~d~i~~l~~ 595 (1198)
||++||+++.. .+.+.++++.+ ++|+|++||+++.+..||+|++|++
T Consensus 148 P~~~LD~~~~~~~l~~~l~~~~~~~~~~iiiitH~~~~~~~~d~i~~l~~ 197 (204)
T cd03240 148 PTTNLDEENIEESLAEIIEERKSQKNFQLIVITHDEELVDAADHIYRVEK 197 (204)
T ss_pred CccccCHHHHHHHHHHHHHHHHhccCCEEEEEEecHHHHhhCCEEEEEee
Confidence 99999999988 99999988765 6899999999998888999999964
|
The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence. |
| >COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.90 E-value=6e-24 Score=209.28 Aligned_cols=128 Identities=28% Similarity=0.450 Sum_probs=112.8
Q ss_pred EEEeeeeEECCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChH---HHHh
Q 000984 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLK---WLRQ 1119 (1198)
Q Consensus 1043 I~f~nVsf~Y~~~~~~~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~~i~l~---~LR~ 1119 (1198)
|+|+||+.+|+.. +++|+||||+|++||.+=++|||||||||+++||++-..|++|+|.++|.|++.+.-. -||+
T Consensus 2 I~f~~V~k~Y~~g--~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~LRR 79 (223)
T COG2884 2 IRFENVSKAYPGG--REALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFLRR 79 (223)
T ss_pred eeehhhhhhcCCC--chhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccchhhh
Confidence 8999999999864 5699999999999999999999999999999999999999999999999999888655 5899
Q ss_pred hcceeccccccc-cccHHHHHhcC-----CCCCCCHHHHHHHHHHcchHHHHHhccccc
Q 000984 1120 QMGLVSQEPVLF-NDTIRANIAYG-----KGGDATEAEIQAASEMANAHKFICSLQQVR 1172 (1198)
Q Consensus 1120 ~IsiV~Qdp~LF-~gTIreNI~~g-----~~~~~tdeei~~Al~~A~l~dfI~~LP~g~ 1172 (1198)
+||+|+||--|. +-|+.||++|. .++..-.+.+.++++.+++.+-...||..+
T Consensus 80 ~IGvVFQD~rLL~~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~~L 138 (223)
T COG2884 80 QIGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALPSQL 138 (223)
T ss_pred eeeeEeeeccccccchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhcCcccc
Confidence 999999999765 67999999974 222223456788999999999999999755
|
|
| >PRK00349 uvrA excinuclease ABC subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.5e-22 Score=251.45 Aligned_cols=102 Identities=31% Similarity=0.537 Sum_probs=92.9
Q ss_pred Cccc-hhcCCCCCCChHHHHHHhHHHhhccCC---CEEEEeCCCCCCCHHhHHHHHHHHHHHh-CCCeEEEEecCcchhh
Q 000984 511 GIDT-LVGEHGTQLSGGQKQRIAIARAILKDP---RILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVR 585 (1198)
Q Consensus 511 g~~t-~v~~~g~~lSgGqkqri~lARal~~~~---~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~ 585 (1198)
|++. .++....+||||||||+.|||+|+++| ++|||||||++||+++.+.+.+.++++. +++|+|+|+|+++.+.
T Consensus 818 gL~~l~l~~~~~tLSgGEkQRl~LAraL~~~p~~~~llILDEPtsGLD~~~~~~L~~~L~~l~~~G~TVIiitH~~~~i~ 897 (943)
T PRK00349 818 GLGYIKLGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFEDIRKLLEVLHRLVDKGNTVVVIEHNLDVIK 897 (943)
T ss_pred CCCcccccCCcccCCHHHHHHHHHHHHHhcCCCCCeEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHH
Confidence 6654 468888999999999999999999999 9999999999999999999999998875 4789999999999998
Q ss_pred ccCEEEEE------eCCEEEEecChhhHhcCCC
Q 000984 586 NADMIAVI------HRGKIVEKGTHSKLVEDPE 612 (1198)
Q Consensus 586 ~~d~i~~l------~~G~i~~~g~~~~l~~~~~ 612 (1198)
.||+|++| ++|+|++.|+++++.+.+.
T Consensus 898 ~aD~ii~Lgp~~G~~~G~Iv~~Gt~~el~~~~~ 930 (943)
T PRK00349 898 TADWIIDLGPEGGDGGGEIVATGTPEEVAKVEA 930 (943)
T ss_pred hCCEEEEecCCcCCCCCEEEEeCCHHHHHhCcc
Confidence 99999999 7999999999999987644
|
|
| >cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.88 E-value=5.4e-23 Score=227.55 Aligned_cols=182 Identities=19% Similarity=0.233 Sum_probs=133.3
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhccCCCC-CCeEEECCe-ecCCcC-H-HHHhcceEEEcCCCCC---------C-cccHH
Q 000984 412 GTTAALVGQSGSGKSTVISLIERFYDPQ-AGEVLIDGI-NLKEFQ-L-QWIRKKIGLVSQEPVL---------F-TGSIK 477 (1198)
Q Consensus 412 g~~~~ivG~~GsGKStl~~~l~g~~~~~-~G~i~i~g~-~~~~~~-~-~~~r~~i~~v~Q~~~l---------~-~~ti~ 477 (1198)
..+++||||||||||||+.+|.+.+.+. .|++...|. ++-... . ...+.++++++|+|-. . .-||+
T Consensus 25 ~~~~~IvG~NGsGKStll~Ai~~ll~~~~~~~~r~~~~~~li~~~~~~~~~~~~v~~~fq~~~~~~~~~~~~~~~~ltV~ 104 (251)
T cd03273 25 PQFNAITGLNGSGKSNILDAICFVLGITNLSTVRASNLQDLIYKRGQAGITKASVTIVFDNSDKSQSPIGFENYPEITVT 104 (251)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhcccccccccccCHHHHhhcCCCCCCcEEEEEEEEEcCCcccCcccccCCceEEEE
Confidence 5699999999999999999999999876 568888776 432111 1 1224589999999621 1 45777
Q ss_pred HHHhcCCC--------CCCHHHHHHHHHHhcHHH----------HHHhCCCCccchhcCCCCCCChHHHHHHhHHHhhc-
Q 000984 478 DNIAYGKD--------DATTEEIRVATELANAAK----------FIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAIL- 538 (1198)
Q Consensus 478 ~Ni~~~~~--------~~~~~~~~~~~~~~~~~~----------~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal~- 538 (1198)
+|+..+.. ....+++.+.++.+++.- .|..+-+. ..........||||||||++||||+.
T Consensus 105 r~I~~~~~~~~~in~~~~~~~~v~~~L~~vgL~~~~~~~~i~Qg~v~~~~~~-~~~~~~~~~~lS~G~~qr~~la~al~~ 183 (251)
T cd03273 105 RQIVLGGTNKYLINGHRAQQQRVQDLFQSVQLNVNNPHFLIMQGRITKVLNM-GGVWKESLTELSGGQRSLVALSLILAL 183 (251)
T ss_pred EEEEcCCceEEEECCEEeeHHHHHHHHHHcCCCCCCceEEEeehHHHHHHHh-HHhhcccccccCHHHHHHHHHHHHHHH
Confidence 77765431 112345555555554420 00000000 02345567789999999999999997
Q ss_pred ---cCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhCCCeEEEEecCcchhhccCEEEEEe
Q 000984 539 ---KDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIH 594 (1198)
Q Consensus 539 ---~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~~d~i~~l~ 594 (1198)
.+|+++||||||++||+.....+.+.++++.++.|+|+|||+.+.+..||+|+-+.
T Consensus 184 ~~~~~~~illlDEPt~~ld~~~~~~~~~~l~~~~~g~~ii~iSH~~~~~~~~d~v~~~~ 242 (251)
T cd03273 184 LLFKPAPMYILDEVDAALDLSHTQNIGRMIKTHFKGSQFIVVSLKEGMFNNANVLFRTR 242 (251)
T ss_pred hhccCCCEEEEeCCCcCCCHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHhCCEEEEEE
Confidence 57899999999999999999999999998878889999999988888999998875
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo |
| >COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.88 E-value=4.5e-23 Score=206.91 Aligned_cols=122 Identities=32% Similarity=0.495 Sum_probs=109.0
Q ss_pred cEEEeeeeEECCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCC-----CeEEECCcccCC--CCh
Q 000984 1042 EIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDA-----GHITLDGVEIQK--LQL 1114 (1198)
Q Consensus 1042 ~I~f~nVsf~Y~~~~~~~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~-----G~I~IDG~dI~~--i~l 1114 (1198)
.++++|+++.|. +..+|+|||++|++++.+|++|||||||||+++.|-|+.|... |+|.+||+||.+ ++.
T Consensus 7 ~~~~~~l~~yYg---~~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d~ 83 (253)
T COG1117 7 AIEVRDLNLYYG---DKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVDV 83 (253)
T ss_pred eeEecceeEEEC---chhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCCH
Confidence 589999999996 3469999999999999999999999999999999999999976 999999999976 589
Q ss_pred HHHHhhcceeccccccccccHHHHHhcCCC-CC----CCHHHHHHHHHHcchHHHHH
Q 000984 1115 KWLRQQMGLVSQEPVLFNDTIRANIAYGKG-GD----ATEAEIQAASEMANAHKFIC 1166 (1198)
Q Consensus 1115 ~~LR~~IsiV~Qdp~LF~gTIreNI~~g~~-~~----~tdeei~~Al~~A~l~dfI~ 1166 (1198)
-.||++||+|+|.|.-|..||+||++||.. +. .-||-++++++.|.+||-+.
T Consensus 84 ~~lRr~vGMVFQkPnPFp~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVK 140 (253)
T COG1117 84 VELRRRVGMVFQKPNPFPMSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVK 140 (253)
T ss_pred HHHHHHheeeccCCCCCCchHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhH
Confidence 999999999999999999999999999943 11 22455788999999999874
|
|
| >PRK14257 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=8.4e-23 Score=232.90 Aligned_cols=124 Identities=31% Similarity=0.498 Sum_probs=105.5
Q ss_pred CCcccEEEeeeeEECCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccC-----CCCCeEEECCcccC--
Q 000984 1038 DVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYD-----PDAGHITLDGVEIQ-- 1110 (1198)
Q Consensus 1038 ~~~G~I~f~nVsf~Y~~~~~~~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~yd-----p~~G~I~IDG~dI~-- 1110 (1198)
+..+.|+|+||+|+|++. ..++|+|+||+|++||++|||||||||||||+++|+|+++ |++|+|.|||+|++
T Consensus 76 ~~~~~i~~~nls~~y~~~-~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~ 154 (329)
T PRK14257 76 NHANVFEIRNFNFWYMNR-TKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSK 154 (329)
T ss_pred CcCceEEEEeeEEEecCC-CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccc
Confidence 456789999999999642 3469999999999999999999999999999999999997 57999999999997
Q ss_pred CCChHHHHhhcceeccccccccccHHHHHhcCCC-CCCCHHHH-----HHHHHHcchH
Q 000984 1111 KLQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKG-GDATEAEI-----QAASEMANAH 1162 (1198)
Q Consensus 1111 ~i~l~~LR~~IsiV~Qdp~LF~gTIreNI~~g~~-~~~tdeei-----~~Al~~A~l~ 1162 (1198)
++++..+|+++++|||+|.+|++|++|||.|++. ...++++. .++++.++++
T Consensus 155 ~~~~~~lr~~i~~v~q~~~~~~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~~L~ 212 (329)
T PRK14257 155 KISSLELRTRIGMVFQKPTPFEMSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAALW 212 (329)
T ss_pred ccchHhhhccEEEEecCCccCCCcHHHHHHhHHHhcCCChHHHHHHHHHHHHHHcCCc
Confidence 4567889999999999999999999999998742 12455543 5567777764
|
|
| >COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.88 E-value=4e-23 Score=212.29 Aligned_cols=127 Identities=29% Similarity=0.452 Sum_probs=111.9
Q ss_pred EEEeeeeEECCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHhhcc
Q 000984 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMG 1122 (1198)
Q Consensus 1043 I~f~nVsf~Y~~~~~~~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~~i~l~~LR~~Is 1122 (1198)
|+|+|||++|. +..+++|+||+|++||.+.++|||||||||+++++.|+++|++|+|+|||.||++++...||++||
T Consensus 2 I~~~nvsk~y~---~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~~LRr~IG 78 (309)
T COG1125 2 IEFENVSKRYG---NKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRRKIG 78 (309)
T ss_pred ceeeeeehhcC---CceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCHHHHHHhhh
Confidence 79999999996 346999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeccccccc-cccHHHHHhcCCC-CCCCH----HHHHHHHHHcchH--HHHHhccccc
Q 000984 1123 LVSQEPVLF-NDTIRANIAYGKG-GDATE----AEIQAASEMANAH--KFICSLQQVR 1172 (1198)
Q Consensus 1123 iV~Qdp~LF-~gTIreNI~~g~~-~~~td----eei~~Al~~A~l~--dfI~~LP~g~ 1172 (1198)
||-|..-|| +-||.|||.+-+. ...+. +.+.+-++.++++ +|-.+.|..+
T Consensus 79 YviQqigLFPh~Tv~eNIa~VP~L~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP~eL 136 (309)
T COG1125 79 YVIQQIGLFPHLTVAENIATVPKLLGWDKERIKKRADELLDLVGLDPSEYADRYPHEL 136 (309)
T ss_pred hhhhhcccCCCccHHHHHHhhhhhcCCCHHHHHHHHHHHHHHhCCCHHHHhhcCchhc
Confidence 999999999 6799999986421 12343 4467778899986 5888887643
|
|
| >KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.88 E-value=4.3e-23 Score=254.86 Aligned_cols=199 Identities=25% Similarity=0.428 Sum_probs=166.2
Q ss_pred CCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCC--CCCCeEEECCeecCCcCHHHHhcceEEEcCCC-CCCcc
Q 000984 398 NEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYD--PQAGEVLIDGINLKEFQLQWIRKKIGLVSQEP-VLFTG 474 (1198)
Q Consensus 398 ~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~--~~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~-~l~~~ 474 (1198)
.+.+|+||+=-++||.++|++|+||||||||++.|.|-.. ..+|+|+|||.+..+ +..++.+|||.|++ ++=.-
T Consensus 803 ~~qLL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t~G~I~Gdi~i~G~p~~q---~tF~R~~GYvqQ~DiH~~~~ 879 (1391)
T KOG0065|consen 803 TRQLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTGGYIEGDILISGFPKDQ---ETFARVSGYVEQQDIHSPEL 879 (1391)
T ss_pred ceEhhhcCceEecCCceeehhcCCCCchHHHHHHHhcCcccceEEeEEEECCeeCch---hhhccccceeecccccCccc
Confidence 3579999999999999999999999999999999998542 257899999988765 67788999999987 56678
Q ss_pred cHHHHHhcCC----C-CCCH----HHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhhccCC-CEE
Q 000984 475 SIKDNIAYGK----D-DATT----EEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDP-RIL 544 (1198)
Q Consensus 475 ti~~Ni~~~~----~-~~~~----~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal~~~~-~il 544 (1198)
||||-+.|.. | +.++ +.++++.+..++.+. -|..||.-|..||.+||.|+.||=-|..+| .||
T Consensus 880 TVrESL~fSA~LRlp~~v~~~ek~~yVe~Vi~lleL~~~-------~daiVG~~G~GLs~eQRKrLTIgVELvA~P~~il 952 (1391)
T KOG0065|consen 880 TVRESLRFSAALRLPKEVSDEEKYEYVEEVIELLELKEY-------ADALVGLPGSGLSTEQRKRLTIGVELVANPSSIL 952 (1391)
T ss_pred chHHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHhCchhh-------hhhhccCCCCCCCHHHhceeeEEEEEecCCceeE
Confidence 9999998741 1 2233 334555555554432 467899999999999999999999999999 899
Q ss_pred EEeCCCCCCCHHhHHHHHHHHHHHh-CCCeEEEEecCcch--hhccCEEEEEe-CCEEEEecChhh
Q 000984 545 LLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLST--VRNADMIAVIH-RGKIVEKGTHSK 606 (1198)
Q Consensus 545 llDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~--~~~~d~i~~l~-~G~i~~~g~~~~ 606 (1198)
.||||||+||++++..|.+.++++. .|+|++..-|+++. ++..|+++.|+ +|+.+..|+..+
T Consensus 953 FLDEPTSGLDsqaA~~i~~~lrkla~tGqtIlCTIHQPS~~ife~FD~LLLLkrGGqtVY~G~lG~ 1018 (1391)
T KOG0065|consen 953 FLDEPTSGLDSQAAAIVMRFLRKLADTGQTILCTIHQPSIDIFEAFDELLLLKRGGQTVYFGPLGE 1018 (1391)
T ss_pred EecCCCCCccHHHHHHHHHHHHHHHhcCCeEEEEecCCcHHHHHHHhHHHHHhcCCeEEEecCccc
Confidence 9999999999999999999998875 58999999999984 56799999996 679999998654
|
|
| >cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.6e-22 Score=219.98 Aligned_cols=133 Identities=33% Similarity=0.573 Sum_probs=122.3
Q ss_pred ccEEEeeeeEECCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHhh
Q 000984 1041 GEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQ 1120 (1198)
Q Consensus 1041 G~I~f~nVsf~Y~~~~~~~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~~i~l~~LR~~ 1120 (1198)
|.|+++|++++|+.. +.++|+|+||+|++||.+||+|++|||||||+++|.|++.|++|+|.+||.++.+.+...+|++
T Consensus 1 ~~l~~~~l~~~~~~~-~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 79 (221)
T cd03244 1 GDIEFKNVSLRYRPN-LPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHDLRSR 79 (221)
T ss_pred CcEEEEEEEEecCCC-CcccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhHhCCHHHHhhh
Confidence 569999999999743 2469999999999999999999999999999999999999999999999999999999999999
Q ss_pred cceeccccccccccHHHHHhcCCCCCCCHHHHHHHHHHcchHHHHHhcccccccee
Q 000984 1121 MGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQVRTSRL 1176 (1198)
Q Consensus 1121 IsiV~Qdp~LF~gTIreNI~~g~~~~~tdeei~~Al~~A~l~dfI~~LP~g~dt~v 1176 (1198)
++++||+|.+|++|++|||.+.. ..+.+++.++++..++.+++.+||.|+++.+
T Consensus 80 i~~~~q~~~l~~~tv~enl~~~~--~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~ 133 (221)
T cd03244 80 ISIIPQDPVLFSGTIRSNLDPFG--EYSDEELWQALERVGLKEFVESLPGGLDTVV 133 (221)
T ss_pred EEEECCCCccccchHHHHhCcCC--CCCHHHHHHHHHHhCcHHHHHhccccccccc
Confidence 99999999999999999998753 4577889999999999999999999998864
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.2e-23 Score=221.79 Aligned_cols=184 Identities=21% Similarity=0.267 Sum_probs=133.2
Q ss_pred cEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHh-cc
Q 000984 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIR-KK 461 (1198)
Q Consensus 383 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r-~~ 461 (1198)
.|+++|.. +|. +..+++++++ ++++|+|||||||||++++|. .++|.+. ...| ++
T Consensus 5 ~l~l~nfk-~~~---~~~~l~~~~~-----~i~~ivGpNGaGKSTll~~i~----------~~~G~~~-----~~~~~~~ 60 (212)
T cd03274 5 KLVLENFK-SYA---GEQVIGPFHK-----SFSAIVGPNGSGKSNVIDSML----------FVFGFRA-----SKMRQKK 60 (212)
T ss_pred EEEEECcc-cCC---CCeeeccCCC-----CeEEEECCCCCCHHHHHHHHH----------HHhccCH-----HHhhhhh
Confidence 36777775 664 3458888887 899999999999999999997 2344332 1233 57
Q ss_pred eEEEcCCCCCCc-ccHHHHHhcCCCCCCHHHH-----HHHH-H----HhcHHHHHHhCCCCccchhcCCCCCCChHHHHH
Q 000984 462 IGLVSQEPVLFT-GSIKDNIAYGKDDATTEEI-----RVAT-E----LANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQR 530 (1198)
Q Consensus 462 i~~v~Q~~~l~~-~ti~~Ni~~~~~~~~~~~~-----~~~~-~----~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqr 530 (1198)
+++++|++.++. .|+++++.+.......+.. .... . ...+ ..+..+|++.++.+ ..||+|||||
T Consensus 61 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~v~~~~~-~~~~~L~~~~~~~~----~~lS~G~~~r 135 (212)
T cd03274 61 LSDLIHNSAGHPNLDSCSVEVHFQEIIDKPLLKSKGIDLDHNRFLILQGEV-EQIAQMPKKSWKNI----SNLSGGEKTL 135 (212)
T ss_pred HHHHhcCCCCCCCCceEEEEEEEEeCCCHHHHHHCCcCCCCCceEEcCCcE-EEeeccccccccch----hhcCHHHHHH
Confidence 999999987664 3677766653221111100 0000 0 0111 12345566665544 4799999999
Q ss_pred HhHHHhhcc----CCCEEEEeCCCCCCCHHhHHHHHHHHHHHhCCCeEEEEecCcchhhccCEEEEEeC
Q 000984 531 IAIARAILK----DPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHR 595 (1198)
Q Consensus 531 i~lARal~~----~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~~d~i~~l~~ 595 (1198)
++||||++. +|++++|||||++||+.+...+.+.++++.++.|+|++||+.+....||+|++|..
T Consensus 136 ~~la~al~~~~~~~p~ililDEPt~gLD~~~~~~l~~~l~~~~~~~~~iivs~~~~~~~~~d~v~~~~~ 204 (212)
T cd03274 136 SSLALVFALHHYKPTPLYVMDEIDAALDFRNVSIVANYIKERTKNAQFIVISLRNNMFELADRLVGIYK 204 (212)
T ss_pred HHHHHHHHhcccCCCCEEEEcCCCcCCCHHHHHHHHHHHHHHcCCCEEEEEECcHHHHHhCCEEEEEEe
Confidence 999999963 58999999999999999999999999998778899999999887788999999963
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo |
| >cd03288 ABCC_SUR2 The SUR domain 2 | Back alignment and domain information |
|---|
Probab=99.87 E-value=3.4e-22 Score=221.99 Aligned_cols=135 Identities=30% Similarity=0.513 Sum_probs=122.9
Q ss_pred CcccEEEeeeeEECCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHH
Q 000984 1039 VKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLR 1118 (1198)
Q Consensus 1039 ~~G~I~f~nVsf~Y~~~~~~~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~~i~l~~LR 1118 (1198)
..|.|+++||+++|+.. +.++|+|+||+|+|||.+||+|++|||||||+++|+|+++|++|+|++||.++.+.+...+|
T Consensus 16 ~~~~i~~~~l~~~~~~~-~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~ 94 (257)
T cd03288 16 LGGEIKIHDLCVRYENN-LKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPLHTLR 94 (257)
T ss_pred CCceEEEEEEEEEeCCC-CCcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCCCCCeEEECCEEhhhCCHHHHh
Confidence 56889999999999742 24699999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcceeccccccccccHHHHHhcCCCCCCCHHHHHHHHHHcchHHHHHhcccccccee
Q 000984 1119 QQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQVRTSRL 1176 (1198)
Q Consensus 1119 ~~IsiV~Qdp~LF~gTIreNI~~g~~~~~tdeei~~Al~~A~l~dfI~~LP~g~dt~v 1176 (1198)
++|++|+|+|.+|++|+++|+.+.. ...+++++++++.+++++++..+|.|+++.+
T Consensus 95 ~~i~~v~q~~~l~~~tv~~nl~~~~--~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~ 150 (257)
T cd03288 95 SRLSIILQDPILFSGSIRFNLDPEC--KCTDDRLWEALEIAQLKNMVKSLPGGLDAVV 150 (257)
T ss_pred hhEEEECCCCcccccHHHHhcCcCC--CCCHHHHHHHHHHhCcHHHHhhcccccCcEe
Confidence 9999999999999999999997642 2356778999999999999999999999864
|
The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. |
| >COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.87 E-value=2e-22 Score=203.63 Aligned_cols=128 Identities=28% Similarity=0.422 Sum_probs=109.5
Q ss_pred cEEEeeeeEECCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccC-CCChHHHHhh
Q 000984 1042 EIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQ-KLQLKWLRQQ 1120 (1198)
Q Consensus 1042 ~I~f~nVsf~Y~~~~~~~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~-~i~l~~LR~~ 1120 (1198)
-|+++||+.+|.+ ..||+|||++|++||+|+|+||||||||||+++|.++-+|++|+|.|||.++. ..++..+|++
T Consensus 2 mi~i~~l~K~fg~---~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~R~~ 78 (240)
T COG1126 2 MIEIKNLSKSFGD---KEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRRK 78 (240)
T ss_pred eEEEEeeeEEeCC---eEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhhHHHHHHh
Confidence 3899999999963 36999999999999999999999999999999999999999999999998773 3489999999
Q ss_pred cceeccccccc-cccHHHHHhcCCC--CCCCHHH----HHHHHHHcchHHHHHhccccc
Q 000984 1121 MGLVSQEPVLF-NDTIRANIAYGKG--GDATEAE----IQAASEMANAHKFICSLQQVR 1172 (1198)
Q Consensus 1121 IsiV~Qdp~LF-~gTIreNI~~g~~--~~~tdee----i~~Al~~A~l~dfI~~LP~g~ 1172 (1198)
+|+|+|...|| +-|+.||+.+++- ...+.+| -.+.++++++.|-..+.|..+
T Consensus 79 vGmVFQ~fnLFPHlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~qL 137 (240)
T COG1126 79 VGMVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLADKADAYPAQL 137 (240)
T ss_pred cCeecccccccccchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhhhhCcccc
Confidence 99999999999 6799999998742 1223333 355678999999998887644
|
|
| >cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules | Back alignment and domain information |
|---|
Probab=99.87 E-value=7.8e-22 Score=215.21 Aligned_cols=137 Identities=42% Similarity=0.750 Sum_probs=120.1
Q ss_pred CCcccEEEeeeeEECCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHH
Q 000984 1038 DVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWL 1117 (1198)
Q Consensus 1038 ~~~G~I~f~nVsf~Y~~~~~~~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~~i~l~~L 1117 (1198)
...|.|+++|++++|+++.+.++|+|+||+|++||.+||+||+|||||||+++|+|+++|++|+|.+||.++...+...+
T Consensus 7 ~~~~~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~ 86 (226)
T cd03248 7 HLKGIVKFQNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKYL 86 (226)
T ss_pred CcCceEEEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCCchHHcCHHHH
Confidence 34678999999999975322469999999999999999999999999999999999999999999999999988888888
Q ss_pred HhhcceeccccccccccHHHHHhcCCCCCCCHHHHHHHHHHcchHHHHHhccccccce
Q 000984 1118 RQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQVRTSR 1175 (1198)
Q Consensus 1118 R~~IsiV~Qdp~LF~gTIreNI~~g~~~~~tdeei~~Al~~A~l~dfI~~LP~g~dt~ 1175 (1198)
|+++++|||++.+|.+|++||+.++.. ..+.+++++.++...+++++..+|.|+++.
T Consensus 87 ~~~i~~~~q~~~l~~~tv~~nl~~~~~-~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~ 143 (226)
T cd03248 87 HSKVSLVGQEPVLFARSLQDNIAYGLQ-SCSFECVKEAAQKAHAHSFISELASGYDTE 143 (226)
T ss_pred HhhEEEEecccHHHhhhHHHHhccccC-CCCHHHHHHHHHHcCcHHHHHhccccccch
Confidence 999999999999999999999998743 345566777777788899999998887654
|
Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. |
| >cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.86 E-value=9e-22 Score=215.28 Aligned_cols=132 Identities=42% Similarity=0.748 Sum_probs=119.9
Q ss_pred ccEEEeeeeEECCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHhh
Q 000984 1041 GEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQ 1120 (1198)
Q Consensus 1041 G~I~f~nVsf~Y~~~~~~~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~~i~l~~LR~~ 1120 (1198)
|+|+++|++++|++ ..++|+|+||+|++||.+||+||+|||||||+++|.|++.|++|+|.+||.++.+.+...+|++
T Consensus 1 ~~l~~~~l~~~~~~--~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 78 (229)
T cd03254 1 GEIEFENVNFSYDE--KKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSLRSM 78 (229)
T ss_pred CeEEEEEEEEecCC--CCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEeHHHcCHHHHhhh
Confidence 46999999999963 2359999999999999999999999999999999999999999999999999999888899999
Q ss_pred cceeccccccccccHHHHHhcCCCCCCCHHHHHHHHHHcchHHHHHhccccccce
Q 000984 1121 MGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQVRTSR 1175 (1198)
Q Consensus 1121 IsiV~Qdp~LF~gTIreNI~~g~~~~~tdeei~~Al~~A~l~dfI~~LP~g~dt~ 1175 (1198)
++++||++.+|++|++||+.++.. ...++++.++++..++.++++.+|.|+++.
T Consensus 79 i~~~~q~~~~~~~tv~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 132 (229)
T cd03254 79 IGVVLQDTFLFSGTIMENIRLGRP-NATDEEVIEAAKEAGAHDFIMKLPNGYDTV 132 (229)
T ss_pred EEEecCCchhhhhHHHHHHhccCC-CCCHHHHHHHHHHhChHHHHHhCcccccCH
Confidence 999999999999999999998743 456778888999999999999999888764
|
In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR00630 uvra excinuclease ABC, A subunit | Back alignment and domain information |
|---|
Probab=99.86 E-value=3.8e-21 Score=241.72 Aligned_cols=97 Identities=34% Similarity=0.571 Sum_probs=88.5
Q ss_pred Cccc-hhcCCCCCCChHHHHHHhHHHhhcc---CCCEEEEeCCCCCCCHHhHHHHHHHHHHHh-CCCeEEEEecCcchhh
Q 000984 511 GIDT-LVGEHGTQLSGGQKQRIAIARAILK---DPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVR 585 (1198)
Q Consensus 511 g~~t-~v~~~g~~lSgGqkqri~lARal~~---~~~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~ 585 (1198)
|++. .+++...+||||||||++|||+|.+ +|++|||||||++||+...+.+.+.++++. ++.|+|+|+|+++.+.
T Consensus 816 gL~~l~l~~~~~tLSgGe~QRl~LA~aL~~~~~~p~llILDEPtsgLD~~~~~~L~~~L~~l~~~G~TVIvi~H~~~~i~ 895 (924)
T TIGR00630 816 GLGYIKLGQPATTLSGGEAQRIKLAKELSKRSTGRTLYILDEPTTGLHFDDIKKLLEVLQRLVDQGNTVVVIEHNLDVIK 895 (924)
T ss_pred CCCchhhcCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH
Confidence 6654 4688889999999999999999997 599999999999999999999999998875 4789999999999998
Q ss_pred ccCEEEEE------eCCEEEEecChhhH
Q 000984 586 NADMIAVI------HRGKIVEKGTHSKL 607 (1198)
Q Consensus 586 ~~d~i~~l------~~G~i~~~g~~~~l 607 (1198)
.||+|++| ++|+|++.|+++++
T Consensus 896 ~aD~ii~Lgp~~G~~gG~iv~~G~~~~l 923 (924)
T TIGR00630 896 TADYIIDLGPEGGDGGGTIVASGTPEEV 923 (924)
T ss_pred hCCEEEEecCCccCCCCEEEEeCCHHHh
Confidence 99999999 79999999999876
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E | Back alignment and domain information |
|---|
Probab=99.86 E-value=9.5e-22 Score=216.19 Aligned_cols=131 Identities=39% Similarity=0.698 Sum_probs=117.7
Q ss_pred EEEeeeeEECCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHhhcc
Q 000984 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMG 1122 (1198)
Q Consensus 1043 I~f~nVsf~Y~~~~~~~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~~i~l~~LR~~Is 1122 (1198)
|+++||+++|+.+ +.++|+|+||+|++||.+||+|++|||||||+++|.|++.|++|+|.+||.|+...+...+|++++
T Consensus 1 i~~~~l~~~~~~~-~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (237)
T cd03252 1 ITFEHVRFRYKPD-GPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRRQVG 79 (237)
T ss_pred CEEEEEEEecCCC-CccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCeehHhcCHHHHhhcEE
Confidence 5799999999642 346999999999999999999999999999999999999999999999999999888888999999
Q ss_pred eeccccccccccHHHHHhcCCCCCCCHHHHHHHHHHcchHHHHHhccccccce
Q 000984 1123 LVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQVRTSR 1175 (1198)
Q Consensus 1123 iV~Qdp~LF~gTIreNI~~g~~~~~tdeei~~Al~~A~l~dfI~~LP~g~dt~ 1175 (1198)
++||++.+|+.|++|||.++.. ..+.+++.++++..++++++..+|.|+++.
T Consensus 80 ~~~q~~~~~~~tv~~nl~~~~~-~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~ 131 (237)
T cd03252 80 VVLQENVLFNRSIRDNIALADP-GMSMERVIEAAKLAGAHDFISELPEGYDTI 131 (237)
T ss_pred EEcCCchhccchHHHHhhccCC-CCCHHHHHHHHHHcCcHHHHHhCcccccch
Confidence 9999999999999999998643 356677888888899999999998887654
|
coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. |
| >KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.86 E-value=3.5e-21 Score=209.28 Aligned_cols=189 Identities=28% Similarity=0.423 Sum_probs=132.8
Q ss_pred cEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcc---CCCCCCeEEECCeecCCcCHHHHh
Q 000984 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERF---YDPQAGEVLIDGINLKEFQLQWIR 459 (1198)
Q Consensus 383 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~---~~~~~G~i~i~g~~~~~~~~~~~r 459 (1198)
.|.++|.+.+-. ++..+.|-||.|-.|..+++|||+|-|||||++.|.-- ++|. |
T Consensus 264 DIKiEnF~ISA~---Gk~LFvnA~L~Iv~GRRYGLVGPNG~GKTTLLkHIa~RalaIPpn---I---------------- 321 (807)
T KOG0066|consen 264 DIKIENFDISAQ---GKLLFVNASLTIVYGRRYGLVGPNGMGKTTLLKHIAARALAIPPN---I---------------- 321 (807)
T ss_pred cceeeeeeeecc---cceeeeccceEEEecceecccCCCCCchHHHHHHHHhhhccCCCC---C----------------
Confidence 377788777653 35588999999999999999999999999999998742 2332 1
Q ss_pred cceEEEcCCCCCCcccHHHHHhcCC-------------------CCCC-HHHHHHH---HHH-------hcHHHHHHhCC
Q 000984 460 KKIGLVSQEPVLFTGSIKDNIAYGK-------------------DDAT-TEEIRVA---TEL-------ANAAKFIDKLP 509 (1198)
Q Consensus 460 ~~i~~v~Q~~~l~~~ti~~Ni~~~~-------------------~~~~-~~~~~~~---~~~-------~~~~~~i~~l~ 509 (1198)
.+-+|-|+..--+.|--+-++-.. .+.+ .+++.++ ++. +.+...+..|
T Consensus 322 -DvLlCEQEvvad~t~Ai~tvl~aD~kRl~lLeee~~L~~q~e~Gd~taaErl~~v~~ELraiGA~sAEarARRILAGL- 399 (807)
T KOG0066|consen 322 -DVLLCEQEVVADSTSAIDTVLKADKKRLALLEEEAKLMSQIEEGDTTAAERLKEVADELRAIGADSAEARARRILAGL- 399 (807)
T ss_pred -ceEeeeeeeeecCcHHHHHHHHhhHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHhccccchhHHHHHHhhc-
Confidence 255666665433332222222000 0000 1122111 111 1122233333
Q ss_pred CCccchhcCCCC-CCChHHHHHHhHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhCCCeEEEEecCcchhhc-c
Q 000984 510 QGIDTLVGEHGT-QLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRN-A 587 (1198)
Q Consensus 510 ~g~~t~v~~~g~-~lSgGqkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~-~ 587 (1198)
|.+-.+-++.. .+|||=|-||+|||||+..|-+|.|||||.+||-...-++-+.+..+ .+|.++|+|+-.++.. |
T Consensus 400 -GFskEMQ~rPt~kFSGGWRMRvSLARALflEPTLLMLDEPTNHLDLNAVIWLdNYLQgW--kKTLLIVSHDQgFLD~VC 476 (807)
T KOG0066|consen 400 -GFSKEMQERPTTKFSGGWRMRVSLARALFLEPTLLMLDEPTNHLDLNAVIWLDNYLQGW--KKTLLIVSHDQGFLDSVC 476 (807)
T ss_pred -CCChhHhcCCccccCCceeeehhHHHHHhcCceeeeecCCccccccceeeehhhHHhhh--hheeEEEecccchHHHHH
Confidence 66777766664 49999999999999999999999999999999999888888888776 4899999999999976 8
Q ss_pred CEEEEEeCCEE
Q 000984 588 DMIAVIHRGKI 598 (1198)
Q Consensus 588 d~i~~l~~G~i 598 (1198)
..|+.||+-++
T Consensus 477 tdIIHLD~qkL 487 (807)
T KOG0066|consen 477 TDIIHLDNQKL 487 (807)
T ss_pred HHHhhhhhhhh
Confidence 88999987665
|
|
| >PF00664 ABC_membrane: ABC transporter transmembrane region; InterPro: IPR001140 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.9e-18 Score=193.30 Aligned_cols=267 Identities=19% Similarity=0.325 Sum_probs=213.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000984 63 IGSIGAIGNGLCLPLMTLLFGDLINTFGDNQNNSETVDKVSKVAVKFVYLGIGSGIASFLQVTCWMITGERQATRIRGLY 142 (1198)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~ 142 (1198)
+++++.++.++..+..|++++.+++........ ...........++++.++...+.....+...+.+.+...++|.++
T Consensus 3 l~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 80 (275)
T PF00664_consen 3 LAILLSILSGLLSLLFPLLLGQIIDSLSSGNSD--NNSSLISLAFLLIAIFLLIFLFSYIYFYLSSRISQRIRKDLRKRL 80 (275)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCTTTTSC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcc--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555556666666777888888875433221 111111112222222333334444444445577889999999999
Q ss_pred HHHHHhCChhhhhccCCcchHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 000984 143 LKTILRQDVAFFDNETNTGEVVGRMSGDTVLIQDAMGEKVGKFLQLMATFLGGFLIAFIKGWLLTLVMLSSIPLLAMSGG 222 (1198)
Q Consensus 143 ~~~ll~~~~~~f~~~~~~G~i~~r~s~D~~~i~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~l~l~~~~~~~~~~~~~~ 222 (1198)
++++++.|..+|++. ++|++++|+++|++.+++.+...+..++..+..+++.+++++..+|.+++++++..|+..++..
T Consensus 81 ~~~~~~~~~~~~~~~-~~g~l~~~i~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~l~~l~~~~~~~~~~~ 159 (275)
T PF00664_consen 81 FEKLLRLPYSYFDKN-SSGELLSRITNDIEQIENFLSSSLFQIISSIISIIFSLILLFFISWKLALILLIILPLLFLISF 159 (275)
T ss_dssp HHHHHHSHHHHHHHS--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhhhhhh-cccccccccccccccccccccccccccccccchhhhhhhcccccccccccccchhhhhhHhhhh
Confidence 999999999999974 9999999999999999999999999999999999999999999999999999989999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000984 223 VMAIMISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYKSGVQEGLAAGIGLGMVMLIVFCSY 302 (1198)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (1198)
.+.+..++..++..+..++..+.+.|.++|+++||+|++|+.+.+++.+..++..+...+.....+........+..+..
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (275)
T PF00664_consen 160 IFSKKIRKLSKKYQEANSELNSFLSESLSGIRTIKAFGAEDYFLERFNKALEKYRKASFKYAKIQALLSSISQFISYLSI 239 (275)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhccccccccccccccccccccccccchhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999888888888887777777777777777
Q ss_pred HHHHHHHHHH-HHhCCCCHHHHHHHHHHHHH
Q 000984 303 ALSVWYGGKL-ILEEGYNGGQVVNVMVAVLT 332 (1198)
Q Consensus 303 ~~~~~~g~~l-~~~~~~~~~~~~~~~~~~l~ 332 (1198)
++.+++|..+ +..+.++.|.++.++.....
T Consensus 240 ~~~~~~g~~~~~~~g~~s~g~~~~~~~~~~~ 270 (275)
T PF00664_consen 240 VLILIFGAYLSVINGQISIGTLVAFLSLSSQ 270 (275)
T ss_dssp HHHHHHHHHH-HCTTSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcCHHHHHHHHHHHHH
Confidence 8888889988 88999999988776554443
|
ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). A variety of ATP-binding transport proteins have a six transmembrane helical region. They are all integral membrane proteins involved in a variety of transport systems. Members of this family include; the cystic fibrosis transmembrane conductance regulator (CFTR), bacterial leukotoxin secretion ATP-binding protein, multidrug resistance proteins, the yeast leptomycin B resistance protein, the mammalian sulphonylurea receptor and antigen peptide transporter 2. Many of these proteins have two such regions.; GO: 0005524 ATP binding, 0042626 ATPase activity, coupled to transmembrane movement of substances, 0006810 transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 3G61_B 3G5U_B 3G60_A 3B60_D 3QF4_B 2HYD_A 2ONJ_A 4A82_B 4AA3_A 2YL4_A. |
| >cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.86 E-value=5.5e-22 Score=218.60 Aligned_cols=183 Identities=17% Similarity=0.170 Sum_probs=129.8
Q ss_pred CEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCee--cC-----CcCHHHHhcceEEEcCCCC--CCcccHHHHHh--
Q 000984 413 TTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGIN--LK-----EFQLQWIRKKIGLVSQEPV--LFTGSIKDNIA-- 481 (1198)
Q Consensus 413 ~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~--~~-----~~~~~~~r~~i~~v~Q~~~--l~~~ti~~Ni~-- 481 (1198)
.+++|+||||||||||+.+|.+.+.+..|++..++.+ +. ..+.....-.+.+..|++. ++..+++++-.
T Consensus 23 ~~~~i~G~NGsGKStll~ai~~~l~~~~~~~r~~~~~~~i~~~~~~~~~~~~~~v~~~f~~~~~~~~~~~~~~~~~~~~~ 102 (247)
T cd03275 23 RFTCIIGPNGSGKSNLMDAISFVLGEKSSHLRSKNLKDLIYRARVGKPDSNSAYVTAVYEDDDGEEKTFRRIITGGSSSY 102 (247)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCcccccccchhhhcccCccccCCCceEEEEEEEEcCCCcEEEEEEEEECCceEE
Confidence 3999999999999999999999988877877654421 10 1111122334556556542 34444444321
Q ss_pred -cCCCCCCHHHHHHHHHHhcHHHHHHh--CCCCccchhcCC---------CCCCChHHHHHHhHHHhhcc----CCCEEE
Q 000984 482 -YGKDDATTEEIRVATELANAAKFIDK--LPQGIDTLVGEH---------GTQLSGGQKQRIAIARAILK----DPRILL 545 (1198)
Q Consensus 482 -~~~~~~~~~~~~~~~~~~~~~~~i~~--l~~g~~t~v~~~---------g~~lSgGqkqri~lARal~~----~~~ill 545 (1198)
+.....+.+++.+.++.+++..+... +++|.-+.+.+. ..+||||||||++||||++. +|+++|
T Consensus 103 ~ingk~~s~~~~~~~l~~~gi~~~~~~~~i~Qg~v~~i~~~~p~~~~~~~~~~LS~G~k~rl~la~al~~~~~~~p~~ll 182 (247)
T cd03275 103 RINGKVVSLKEYNEELEKINILVKARNFLVFQGDVESIASKNPPGKRFRDMDNLSGGEKTMAALALLFAIHSYQPAPFFV 182 (247)
T ss_pred EECCEEecHHHHHHHHHHhCCCCCCCeEEEECCchhhhhhccCcchhhhhHHHcCHHHHHHHHHHHHHHHhccCCCCEEE
Confidence 11223556777777777776432111 234443444322 26899999999999999975 489999
Q ss_pred EeCCCCCCCHHhHHHHHHHHHHHhC-CCeEEEEecCcchhhccCEEEEEeC
Q 000984 546 LDEATSALDAESEKVVQEALDRIMV-NRTTVIVAHRLSTVRNADMIAVIHR 595 (1198)
Q Consensus 546 lDe~ts~lD~~~~~~i~~~i~~~~~-~~t~i~itH~~~~~~~~d~i~~l~~ 595 (1198)
|||||++||+.....+.+.|.++.+ +.|+|+|||+.+.+..||++++|..
T Consensus 183 lDEPt~~LD~~~~~~l~~~i~~~~~~g~~vi~isH~~~~~~~~d~i~~~~~ 233 (247)
T cd03275 183 LDEVDAALDNTNVGKVASYIREQAGPNFQFIVISLKEEFFSKADALVGVYR 233 (247)
T ss_pred EecccccCCHHHHHHHHHHHHHhccCCcEEEEEECCHHHHhhCCeEEEEEe
Confidence 9999999999999999999988765 7899999999998888999999964
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for |
| >COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.6e-20 Score=211.53 Aligned_cols=214 Identities=22% Similarity=0.414 Sum_probs=173.5
Q ss_pred ccEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeec-CCcCHHHHh-
Q 000984 382 GDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINL-KEFQLQWIR- 459 (1198)
Q Consensus 382 g~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~-~~~~~~~~r- 459 (1198)
..++++|++..-. + +.+.+++|||++++||++||.|-.|-|-+-|+.+|.|+..|.+|+|.++|+|+ ...+....|
T Consensus 256 ~vL~V~~L~v~~~-~-~~~~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~~~~G~I~l~G~~v~~~~~~~~~r~ 333 (501)
T COG3845 256 VVLEVEDLSVKDR-R-GVTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPASGRILLNGKDVLGRLSPRERRR 333 (501)
T ss_pred eEEEEeeeEeecC-C-CCceeeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCCCccCCceEEECCEeccccCCHHHHHh
Confidence 4589999998743 2 24689999999999999999999999999999999999999999999999997 566776665
Q ss_pred cceEEEcCCCC----CCcccHHHHHhcCCCC---------CCHHHHHHHHHHhcHHHHHHhC---CCCccchhcCCCCCC
Q 000984 460 KKIGLVSQEPV----LFTGSIKDNIAYGKDD---------ATTEEIRVATELANAAKFIDKL---PQGIDTLVGEHGTQL 523 (1198)
Q Consensus 460 ~~i~~v~Q~~~----l~~~ti~~Ni~~~~~~---------~~~~~~~~~~~~~~~~~~i~~l---~~g~~t~v~~~g~~l 523 (1198)
..++|||.|.+ ....|+.||+.++.-. .+..++.+..+ +.++.+ +.+.++ ...+|
T Consensus 334 ~G~~~VPedR~~~Glv~~~sl~eN~vL~~~~~~~~~~~g~l~~~~i~~~a~-----~li~~fdVr~~~~~~----~a~~L 404 (501)
T COG3845 334 LGLAYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFAR-----ELIEEFDVRAPSPDA----PARSL 404 (501)
T ss_pred cCCccCChhhccCccccCccHHHHhhhhhccccccccccccCHHHHHHHHH-----HHHHHcCccCCCCCc----chhhc
Confidence 57999999984 5578999999976432 11233332222 223332 223333 34579
Q ss_pred ChHHHHHHhHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh-CCCeEEEEecCcchhh-ccCEEEEEeCCEEEEe
Q 000984 524 SGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVR-NADMIAVIHRGKIVEK 601 (1198)
Q Consensus 524 SgGqkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~-~~d~i~~l~~G~i~~~ 601 (1198)
|||+.||+-+||-+.++|++||...||-+||..+.+.|.+.|.+.. +++.|++|+-.++.+. .||||.||.+|+++..
T Consensus 405 SGGNqQK~IlaREl~~~p~lLI~~qPTrGLDvgA~~~I~~~l~e~r~~G~AVLLiS~dLDEil~lsDrIaVi~~Gri~~~ 484 (501)
T COG3845 405 SGGNQQKLILARELARRPDLLIAAQPTRGLDVGAIEFIHERLLELRDAGKAVLLISEDLDEILELSDRIAVIYEGRIVGI 484 (501)
T ss_pred CCcceehhhhhhhhccCCCEEEEcCCCccccHHHHHHHHHHHHHHHhcCCEEEEEehhHHHHHHhhheeeeeeCCceecc
Confidence 9999999999999999999999999999999999999988887765 5789999999999875 5999999999999987
Q ss_pred cChhh
Q 000984 602 GTHSK 606 (1198)
Q Consensus 602 g~~~~ 606 (1198)
.++++
T Consensus 485 ~~~~~ 489 (501)
T COG3845 485 VPPEE 489 (501)
T ss_pred ccccc
Confidence 76654
|
|
| >cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1 | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.3e-21 Score=213.23 Aligned_cols=133 Identities=61% Similarity=0.986 Sum_probs=118.6
Q ss_pred EEEeeeeEECCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHhhcc
Q 000984 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMG 1122 (1198)
Q Consensus 1043 I~f~nVsf~Y~~~~~~~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~~i~l~~LR~~Is 1122 (1198)
|+++|++++|++..+.++|+|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.+||.++.+.+...+|++++
T Consensus 1 l~i~~l~~~~~~~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 80 (238)
T cd03249 1 IEFKNVSFRYPSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWLRSQIG 80 (238)
T ss_pred CeEEEEEEecCCCCCccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCCCCEEEECCEehhhcCHHHHHhhEE
Confidence 57899999997432346999999999999999999999999999999999999999999999999999888888889999
Q ss_pred eeccccccccccHHHHHhcCCCCCCCHHHHHHHHHHcchHHHHHhcccccccee
Q 000984 1123 LVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQVRTSRL 1176 (1198)
Q Consensus 1123 iV~Qdp~LF~gTIreNI~~g~~~~~tdeei~~Al~~A~l~dfI~~LP~g~dt~v 1176 (1198)
++||++.+|+.|++||+.++.. ..+.+++.++++..++.+++..+|.|+++.+
T Consensus 81 ~~~q~~~~~~~tv~e~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 133 (238)
T cd03249 81 LVSQEPVLFDGTIAENIRYGKP-DATDEEVEEAAKKANIHDFIMSLPDGYDTLV 133 (238)
T ss_pred EECCchhhhhhhHHHHhhccCC-CCCHHHHHHHHHHcChHHHHHhhccccceee
Confidence 9999999999999999998743 4466778888888899999999998887653
|
In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. |
| >COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.7e-21 Score=216.44 Aligned_cols=126 Identities=27% Similarity=0.470 Sum_probs=112.6
Q ss_pred cEEEeeeeEECCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHhhc
Q 000984 1042 EIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQM 1121 (1198)
Q Consensus 1042 ~I~f~nVsf~Y~~~~~~~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~~i~l~~LR~~I 1121 (1198)
.|+++||+.+|++. .||+|+||+|+.||.++|||||||||||++++|.||.+|++|+|+|||.|++++++++ ++|
T Consensus 3 ~i~l~~v~K~yg~~---~~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P~~--R~i 77 (338)
T COG3839 3 ELELKNVRKSFGSF---EVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEK--RGI 77 (338)
T ss_pred EEEEeeeEEEcCCc---eeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhH--CCE
Confidence 58999999999632 2999999999999999999999999999999999999999999999999999999986 899
Q ss_pred ceeccccccccc-cHHHHHhcCCCC-----CCCHHHHHHHHHHcchHHHHHhccccc
Q 000984 1122 GLVSQEPVLFND-TIRANIAYGKGG-----DATEAEIQAASEMANAHKFICSLQQVR 1172 (1198)
Q Consensus 1122 siV~Qdp~LF~g-TIreNI~~g~~~-----~~tdeei~~Al~~A~l~dfI~~LP~g~ 1172 (1198)
++|+|+.-||.- |++|||.|+-.. +--++++.++++.-++.+..++.|..+
T Consensus 78 amVFQ~yALyPhmtV~~Niaf~Lk~~~~~k~ei~~rV~eva~~L~l~~lL~r~P~~L 134 (338)
T COG3839 78 AMVFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLNRKPLQL 134 (338)
T ss_pred EEEeCCccccCCCcHHHHhhhhhhhCCCchHHHHHHHHHHHHHcCChhHHhcCcccC
Confidence 999999999955 999999998421 123567899999999999999988654
|
|
| >cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters | Back alignment and domain information |
|---|
Probab=99.85 E-value=3.6e-21 Score=209.11 Aligned_cols=134 Identities=37% Similarity=0.659 Sum_probs=120.2
Q ss_pred ccEEEeeeeEECCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHhh
Q 000984 1041 GEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQ 1120 (1198)
Q Consensus 1041 G~I~f~nVsf~Y~~~~~~~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~~i~l~~LR~~ 1120 (1198)
|+|+++|++++|+++ ..++|+|+||+|++||.+||+||+|||||||+++|.|+++|++|+|.+||.++..++...+|++
T Consensus 1 ~~l~~~~l~~~~~~~-~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 79 (220)
T cd03245 1 GRIEFRNVSFSYPNQ-EIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADLRRN 79 (220)
T ss_pred CeEEEEEEEEEcCCC-CcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEEhHHCCHHHHHhh
Confidence 469999999999642 2469999999999999999999999999999999999999999999999999988888888999
Q ss_pred cceeccccccccccHHHHHhcCCCCCCCHHHHHHHHHHcchHHHHHhcccccccee
Q 000984 1121 MGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQVRTSRL 1176 (1198)
Q Consensus 1121 IsiV~Qdp~LF~gTIreNI~~g~~~~~tdeei~~Al~~A~l~dfI~~LP~g~dt~v 1176 (1198)
++++||++.+|..|++||+.++.. ..+.+++.++++..++.+.+.++|.|++|.+
T Consensus 80 i~~~~q~~~~~~~tv~e~l~~~~~-~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~ 134 (220)
T cd03245 80 IGYVPQDVTLFYGTLRDNITLGAP-LADDERILRAAELAGVTDFVNKHPNGLDLQI 134 (220)
T ss_pred EEEeCCCCccccchHHHHhhcCCC-CCCHHHHHHHHHHcCcHHHHHhcccccccee
Confidence 999999999999999999988632 3456778889999999999999998888763
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. |
| >cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.4e-21 Score=212.97 Aligned_cols=131 Identities=44% Similarity=0.713 Sum_probs=119.6
Q ss_pred EEEeeeeEECCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHhhcc
Q 000984 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMG 1122 (1198)
Q Consensus 1043 I~f~nVsf~Y~~~~~~~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~~i~l~~LR~~Is 1122 (1198)
|+++||+++|++ +.++|+|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.+||.++.+.+...+|+.++
T Consensus 1 l~~~~l~~~~~~--~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~~g~~~~~~~~~~~~~~i~ 78 (236)
T cd03253 1 IEFENVTFAYDP--GRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSLRRAIG 78 (236)
T ss_pred CEEEEEEEEeCC--CCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEhhhCCHHHHHhhEE
Confidence 579999999963 235999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeccccccccccHHHHHhcCCCCCCCHHHHHHHHHHcchHHHHHhcccccccee
Q 000984 1123 LVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQVRTSRL 1176 (1198)
Q Consensus 1123 iV~Qdp~LF~gTIreNI~~g~~~~~tdeei~~Al~~A~l~dfI~~LP~g~dt~v 1176 (1198)
+++|++.+|++|++||+.++.. ..+++++.++++.+++.+.+..+|.|+++.+
T Consensus 79 ~~~q~~~~~~~tv~~nl~~~~~-~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~ 131 (236)
T cd03253 79 VVPQDTVLFNDTIGYNIRYGRP-DATDEEVIEAAKAAQIHDKIMRFPDGYDTIV 131 (236)
T ss_pred EECCCChhhcchHHHHHhhcCC-CCCHHHHHHHHHHcCcHHHHHhccccccchh
Confidence 9999999999999999998743 4677888899999999999999999988753
|
Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins | Back alignment and domain information |
|---|
Probab=99.85 E-value=4.2e-21 Score=210.71 Aligned_cols=131 Identities=50% Similarity=0.819 Sum_probs=118.1
Q ss_pred EEEeeeeEECCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHhhcc
Q 000984 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMG 1122 (1198)
Q Consensus 1043 I~f~nVsf~Y~~~~~~~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~~i~l~~LR~~Is 1122 (1198)
|+++|++++|++. +.++|+|+||++++||.+||+|++|||||||+++|.|++.|++|+|.+||.++.+.+...+|++++
T Consensus 1 i~~~~l~~~~~~~-~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (234)
T cd03251 1 VEFKNVTFRYPGD-GPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASLRRQIG 79 (234)
T ss_pred CEEEEEEEEeCCC-CccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccCCCCEEEECCEEhhhCCHHHHHhhEE
Confidence 5799999999643 235999999999999999999999999999999999999999999999999999888889999999
Q ss_pred eeccccccccccHHHHHhcCCCCCCCHHHHHHHHHHcchHHHHHhccccccce
Q 000984 1123 LVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQVRTSR 1175 (1198)
Q Consensus 1123 iV~Qdp~LF~gTIreNI~~g~~~~~tdeei~~Al~~A~l~dfI~~LP~g~dt~ 1175 (1198)
++||++.+|+.|++||+.++.. ..+.+++.++++..+++++++.+|.|+++.
T Consensus 80 ~~~q~~~~~~~tv~enl~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 131 (234)
T cd03251 80 LVSQDVFLFNDTVAENIAYGRP-GATREEVEEAARAANAHEFIMELPEGYDTV 131 (234)
T ss_pred EeCCCCeeccccHHHHhhccCC-CCCHHHHHHHHHHcCcHHHHHhcccCccee
Confidence 9999999999999999998743 456677888889999999999999888764
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.85 E-value=8.2e-21 Score=206.41 Aligned_cols=190 Identities=31% Similarity=0.448 Sum_probs=148.3
Q ss_pred cEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcce
Q 000984 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKI 462 (1198)
Q Consensus 383 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i 462 (1198)
.+-+.||+|.||+ ..|.+++++|-|.--..++||||+|.|||||+++|.|.++|++|+.+-+- |-+|
T Consensus 586 vLGlH~VtFgy~g--qkpLFkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~P~~GE~RKnh-----------rL~i 652 (807)
T KOG0066|consen 586 VLGLHDVTFGYPG--QKPLFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLDPNDGELRKNH-----------RLRI 652 (807)
T ss_pred eeecccccccCCC--CCchhhcccccccccceeEEECCCCccHHHHHHHHhcCCCCCcchhhccc-----------eeee
Confidence 4678999999986 36899999999999999999999999999999999999999999886553 4579
Q ss_pred EEEcCCCC--CC-cccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhhcc
Q 000984 463 GLVSQEPV--LF-TGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILK 539 (1198)
Q Consensus 463 ~~v~Q~~~--l~-~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal~~ 539 (1198)
|+..|... |- ..|-.|-+.-++ +...++.++++...++.. .-+|. ....||||||.|++||--.++
T Consensus 653 G~FdQh~~E~L~~Eetp~EyLqr~F-Nlpyq~ARK~LG~fGL~s-------HAHTi---kikdLSGGQKaRValaeLal~ 721 (807)
T KOG0066|consen 653 GWFDQHANEALNGEETPVEYLQRKF-NLPYQEARKQLGTFGLAS-------HAHTI---KIKDLSGGQKARVALAELALG 721 (807)
T ss_pred echhhhhHHhhccccCHHHHHHHhc-CCChHHHHHHhhhhhhhh-------ccceE---eeeecCCcchHHHHHHHHhcC
Confidence 99988762 22 346666665332 345566666665554432 12232 234699999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHhHHHHHHHHHHHhCCCeEEEEecCcchhhccCE-EEEEeCCEE
Q 000984 540 DPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADM-IAVIHRGKI 598 (1198)
Q Consensus 540 ~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~~d~-i~~l~~G~i 598 (1198)
.||||||||||.+||.++-..+-++|.++ +..||+|+|+-..+...|. ..|+++-.|
T Consensus 722 ~PDvlILDEPTNNLDIESIDALaEAIney--~GgVi~VsHDeRLi~eT~C~LwVvE~Q~i 779 (807)
T KOG0066|consen 722 GPDVLILDEPTNNLDIESIDALAEAINEY--NGGVIMVSHDERLIVETDCNLWVVENQGI 779 (807)
T ss_pred CCCEEEecCCCCCcchhhHHHHHHHHHhc--cCcEEEEecccceeeecCceEEEEccCCh
Confidence 99999999999999999999999999887 4579999999988876543 344444333
|
|
| >COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.7e-21 Score=216.01 Aligned_cols=134 Identities=29% Similarity=0.517 Sum_probs=116.0
Q ss_pred cEEEeeeeEECCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHhhc
Q 000984 1042 EIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQM 1121 (1198)
Q Consensus 1042 ~I~f~nVsf~Y~~~~~~~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~~i~l~~LR~~I 1121 (1198)
.|+|+||+.+|. +..+|+||||+|++||.+++.|||||||||++++|.||..|++|+|.|||.||.+++.+ ++.|
T Consensus 5 ~l~i~~v~k~yg---~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lpp~--kR~i 79 (352)
T COG3842 5 ALEIRNVSKSFG---DFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPE--KRPI 79 (352)
T ss_pred eEEEEeeeeecC---CeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChh--hccc
Confidence 599999999996 34699999999999999999999999999999999999999999999999999998886 5899
Q ss_pred ceeccccccc-cccHHHHHhcCCC--CCCCH----HHHHHHHHHcchHHHHHhccc----cccceeeeee
Q 000984 1122 GLVSQEPVLF-NDTIRANIAYGKG--GDATE----AEIQAASEMANAHKFICSLQQ----VRTSRLLLVM 1180 (1198)
Q Consensus 1122 siV~Qdp~LF-~gTIreNI~~g~~--~~~td----eei~~Al~~A~l~dfI~~LP~----g~dt~v~~~~ 1180 (1198)
++|+|+.-|| +-||+|||.||-. ....+ +.+.++++.+++.+|-.+.|. |-.-+|||.-
T Consensus 80 g~VFQ~YALFPHltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~~~~R~p~qLSGGQqQRVALAR 149 (352)
T COG3842 80 GMVFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFADRKPHQLSGGQQQRVALAR 149 (352)
T ss_pred ceeecCcccCCCCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchhhhhhChhhhChHHHHHHHHHH
Confidence 9999999999 7799999999943 11232 368899999999998777664 5556666543
|
|
| >COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.84 E-value=3e-21 Score=205.16 Aligned_cols=129 Identities=27% Similarity=0.442 Sum_probs=108.9
Q ss_pred EEEeeeeEECCCC--CCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCC---hHHH
Q 000984 1043 IELHHVSFKYPSR--PDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQ---LKWL 1117 (1198)
Q Consensus 1043 I~f~nVsf~Y~~~--~~~~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~~i~---l~~L 1117 (1198)
|+|+|||..|+.. ....+|+||||+|++||..||||+||||||||++++-|+-+|++|+|.+||+|+..++ +..+
T Consensus 2 I~l~~vsK~~~~~~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~Lr~~ 81 (339)
T COG1135 2 IELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELRQL 81 (339)
T ss_pred eEEEeeeeeeccCCCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHHHHHH
Confidence 8999999999852 1246999999999999999999999999999999999999999999999998887775 5566
Q ss_pred Hhhcceecccccccc-ccHHHHHhcCCC-CCCCHH----HHHHHHHHcchHHHHHhcccc
Q 000984 1118 RQQMGLVSQEPVLFN-DTIRANIAYGKG-GDATEA----EIQAASEMANAHKFICSLQQV 1171 (1198)
Q Consensus 1118 R~~IsiV~Qdp~LF~-gTIreNI~~g~~-~~~tde----ei~~Al~~A~l~dfI~~LP~g 1171 (1198)
|++|++|+|++.|++ .|+.+|++|.-. ...+.+ .+.+.++.+++.|.-.+-|..
T Consensus 82 R~~IGMIFQhFnLLssrTV~~NvA~PLeiag~~k~ei~~RV~elLelVgL~dk~~~yP~q 141 (339)
T COG1135 82 RQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIKQRVAELLELVGLSDKADRYPAQ 141 (339)
T ss_pred HhhccEEeccccccccchHHhhhhhhHhhcCCCHHHHHHHHHHHHHHcCChhhhccCchh
Confidence 789999999999997 899999998311 123344 456788999999888776653
|
|
| >cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=99.84 E-value=5.5e-21 Score=204.98 Aligned_cols=119 Identities=30% Similarity=0.451 Sum_probs=107.0
Q ss_pred EEEeeeeEECCCCCC--ccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHhh
Q 000984 1043 IELHHVSFKYPSRPD--VQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQ 1120 (1198)
Q Consensus 1043 I~f~nVsf~Y~~~~~--~~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~~i~l~~LR~~ 1120 (1198)
|+++||+++|++..+ .++|+|+||+|++||.++|+|++|||||||+++|+|+++|++|+|.+|| +
T Consensus 1 l~~~~l~~~~~~~~~~~~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~~g-------------~ 67 (204)
T cd03250 1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPG-------------S 67 (204)
T ss_pred CEEeEEEEecCCCCccccceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCCCCeEEEcC-------------E
Confidence 579999999974311 3699999999999999999999999999999999999999999999999 6
Q ss_pred cceeccccccccccHHHHHhcCCCCCCCHHHHHHHHHHcchHHHHHhcccccccee
Q 000984 1121 MGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQVRTSRL 1176 (1198)
Q Consensus 1121 IsiV~Qdp~LF~gTIreNI~~g~~~~~tdeei~~Al~~A~l~dfI~~LP~g~dt~v 1176 (1198)
|++|||+|.+|++|++||+.++. ..++++++++++.+++.+++..+|.|+++.+
T Consensus 68 i~~~~q~~~l~~~t~~enl~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 121 (204)
T cd03250 68 IAYVSQEPWIQNGTIRENILFGK--PFDEERYEKVIKACALEPDLEILPDGDLTEI 121 (204)
T ss_pred EEEEecCchhccCcHHHHhccCC--CcCHHHHHHHHHHcCcHHHHHhccCccccee
Confidence 99999999999999999999863 3456778899999999999999999988765
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.84 E-value=9.3e-21 Score=212.52 Aligned_cols=194 Identities=27% Similarity=0.374 Sum_probs=160.9
Q ss_pred ccEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcc
Q 000984 382 GDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKK 461 (1198)
Q Consensus 382 g~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~ 461 (1198)
..+++.+|+|.|+.. +.+.+.+++++++.-+++++||++|+||||+++++.+...|..|.+.+.+ |.+
T Consensus 361 p~l~i~~V~f~y~p~-~y~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~~~rgi~~~~~-----------r~r 428 (582)
T KOG0062|consen 361 PNLRISYVAFEYTPS-EYQWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLTPTRGIVGRHP-----------RLR 428 (582)
T ss_pred CeeEEEeeeccCCCc-chhhhhccCCccchhhhhheeccCchhHHHHHHHHhccCCcccceeeecc-----------cce
Confidence 458999999999643 23789999999999999999999999999999999999999999998887 678
Q ss_pred eEEEcCCCCCC-cccH--HHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCC-CCCChHHHHHHhHHHhh
Q 000984 462 IGLVSQEPVLF-TGSI--KDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHG-TQLSGGQKQRIAIARAI 537 (1198)
Q Consensus 462 i~~v~Q~~~l~-~~ti--~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g-~~lSgGqkqri~lARal 537 (1198)
|+|-.|...=+ +-.+ -|-..-..|-.+++++++.|...++... +.... ..||||||-|+++|-+.
T Consensus 429 i~~f~Qhhvd~l~~~v~~vd~~~~~~pG~~~ee~r~hl~~~Gl~g~-----------la~~si~~LSGGQKsrvafA~~~ 497 (582)
T KOG0062|consen 429 IKYFAQHHVDFLDKNVNAVDFMEKSFPGKTEEEIRRHLGSFGLSGE-----------LALQSIASLSGGQKSRVAFAACT 497 (582)
T ss_pred ecchhHhhhhHHHHHhHHHHHHHHhCCCCCHHHHHHHHHhcCCCch-----------hhhccccccCCcchhHHHHHHHh
Confidence 99999976422 2222 2222212344578999988877655443 33333 56999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhCCCeEEEEecCcchhhc-cCEEEEEeCCEEEE
Q 000984 538 LKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVE 600 (1198)
Q Consensus 538 ~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~ 600 (1198)
+.+|.+|+|||||+.||.++-..+-++|+.+ +.-||+|||+.+++.. |+.+.+.++|++..
T Consensus 498 ~~~PhlLVLDEPTNhLD~dsl~AL~~Al~~F--~GGVv~VSHd~~fi~~~c~E~Wvve~g~vt~ 559 (582)
T KOG0062|consen 498 WNNPHLLVLDEPTNHLDRDSLGALAKALKNF--NGGVVLVSHDEEFISSLCKELWVVEDGKVTP 559 (582)
T ss_pred cCCCcEEEecCCCccccHHHHHHHHHHHHhc--CCcEEEEECcHHHHhhcCceeEEEcCCcEEe
Confidence 9999999999999999999988888899876 4579999999999986 99999999999975
|
|
| >cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1) | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.4e-21 Score=208.26 Aligned_cols=136 Identities=32% Similarity=0.556 Sum_probs=116.6
Q ss_pred cccEEEeeeeEECCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHh
Q 000984 1040 KGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQ 1119 (1198)
Q Consensus 1040 ~G~I~f~nVsf~Y~~~~~~~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~~i~l~~LR~ 1119 (1198)
.+.|+++|++++|+.. ..++|+|+||+|++||.+||+|++|||||||+++|+|+++|++|+|.+||.++.+.+...+|+
T Consensus 4 ~~~l~~~~l~~~~~~~-~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~ 82 (207)
T cd03369 4 HGEIEVENLSVRYAPD-LPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDLRS 82 (207)
T ss_pred CCeEEEEEEEEEeCCC-CcccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEhHHCCHHHHHh
Confidence 4679999999999742 236999999999999999999999999999999999999999999999999999999989999
Q ss_pred hcceeccccccccccHHHHHhcCCCCCCCHHHHHHHHHHcchHHHHHhccccccceeeeeec
Q 000984 1120 QMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQVRTSRLLLVMI 1181 (1198)
Q Consensus 1120 ~IsiV~Qdp~LF~gTIreNI~~g~~~~~tdeei~~Al~~A~l~dfI~~LP~g~dt~v~~~~~ 1181 (1198)
+|++|||+|.+|++|+++||.+.. ..+++++.++++ ++..+..|+.|...++++..+
T Consensus 83 ~i~~v~q~~~~~~~tv~~~l~~~~--~~~~~~~~~~l~---~~~~~~~LS~G~~qrv~lara 139 (207)
T cd03369 83 SLTIIPQDPTLFSGTIRSNLDPFD--EYSDEEIYGALR---VSEGGLNLSQGQRQLLCLARA 139 (207)
T ss_pred hEEEEecCCcccCccHHHHhcccC--CCCHHHHHHHhh---ccCCCCcCCHHHHHHHHHHHH
Confidence 999999999999999999998752 356677777776 455666777776666665543
|
NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. |
| >KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.6e-18 Score=197.26 Aligned_cols=341 Identities=13% Similarity=0.119 Sum_probs=218.2
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 000984 824 ARLSADAASVRALVGDALARIVQNISTAAAGLIIAFT-ASWQLALIILVMLPLIGVSGYTQMKFMKGFSADAKMKYEEAS 902 (1198)
Q Consensus 824 ~r~s~D~~~i~~~l~~~l~~~i~~~~~~i~~li~~~~-~~~~l~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 902 (1198)
.|+++|++..-..+......++...+.++....-++. ..|+-...++..+.+-.++...+++.+.+..-+.++..++..
T Consensus 186 QrltqDv~kf~~~l~sl~s~l~~a~~di~~Y~~~l~~s~g~~gp~~i~~Yf~~~~vi~~~L~~pI~~l~~~qeklEGdfR 265 (659)
T KOG0060|consen 186 QRLTQDVEKFCRQLSSLYSNLLKAPFDLVYYTFRLFESAGWLGPVSIFAYFLIGTVINKTLRGPIVKLTVEQEKLEGDFR 265 (659)
T ss_pred HHHhHHHHHHHHHHHHHHHhhhccceeeehhhhHHhhhcCcccHHHHHHHHHHHHHHHhhhccchhHHHHHHHHhhcchh
Confidence 4899999888777776666666655554444433333 345544444455554555556666666666666677777776
Q ss_pred HHHHHHhchhHHHHHhcchHHHHHHHHHHhhhHHHHhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH----hcCCcC
Q 000984 903 QVANDAVGSIRTVASFCAEEKVMQLYKKKCEAPMKTGIRQGMVSGGGFGASFFLLFAFYAASFYAGARLV----EDGKAT 978 (1198)
Q Consensus 903 ~~~~E~l~gi~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~----~~g~~t 978 (1198)
-.-.+...|...|.-|+.++.+...-+...++..+.......+.-...-+..++-++..++...+.+.-+ ..+.++
T Consensus 266 y~h~rlr~NaE~iAFY~g~~~E~~~~~~~f~~Lv~~l~~l~~~r~~l~f~~n~~~Ylg~ilsy~vi~~p~Fs~h~y~~~s 345 (659)
T KOG0060|consen 266 YKHSRLRVNAEEIAFYRGGQVEHQRTDQRFRNLVQHLRELMSFRFWLGFIDNIFDYLGGILSYVVIAIPFFSGHVYDDLS 345 (659)
T ss_pred hheeeeeecchhhhhhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhheeeEEeeeeecccccCCcC
Confidence 6666777888899999998888777776666655544333332222222222222222222111111111 233455
Q ss_pred HHHHHHHHHH----HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhcCCCCCC-------------CCC-------CCCC
Q 000984 979 FSDVFKVFFS----LTMTAIGISQSSSFSSDSNKAKSAAASIFAIIDRESKID-------------PSD-------ESGT 1034 (1198)
Q Consensus 979 ~g~l~~~~~~----~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~~-------------~~~-------~~~~ 1034 (1198)
..++...+.. ...+...++.+.....++.+...-..||.++.+.-.+.. .+. ++..
T Consensus 346 ~aEL~~~i~~na~~~i~Li~~f~~l~~~~~~ls~lsGyt~Ri~el~~~l~d~~~~~~~~~~~~~~~~E~~~~l~~~~G~~ 425 (659)
T KOG0060|consen 346 PAELSGLISNNAFVFIYLISAFGRLVDLSRDLSRLSGYTHRIGELMEVLDDLSSGSQECTMEEEELGEAEWGLSLPPGSG 425 (659)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHHhccCCcchhhhhhhhhhhhhccCCCCCCc
Confidence 5555544332 223344445555555566666666777776654211100 000 0000
Q ss_pred cccCCcccEEEeeeeEECCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEE--CCcccCCC
Q 000984 1035 ILEDVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITL--DGVEIQKL 1112 (1198)
Q Consensus 1035 ~~~~~~G~I~f~nVsf~Y~~~~~~~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~I--DG~dI~~i 1112 (1198)
...+..-.|+|++|++.=|++ +....+|+||+|+.|+.+-|+||||||||+|++.|.++|+..+|+|.- ||-+
T Consensus 426 ~~~~~Dn~i~~e~v~l~tPt~-g~~lie~Ls~~V~~g~~LLItG~sG~GKtSLlRvlggLWp~~~G~l~k~~~~~~---- 500 (659)
T KOG0060|consen 426 KAEPADNAIEFEEVSLSTPTN-GDLLIENLSLEVPSGQNLLITGPSGCGKTSLLRVLGGLWPSTGGKLTKPTDGGP---- 500 (659)
T ss_pred ccccccceEEeeeeeecCCCC-CceeeeeeeeEecCCCeEEEECCCCCchhHHHHHHhcccccCCCeEEecccCCC----
Confidence 111223469999999999875 444677899999999999999999999999999999999999999875 4433
Q ss_pred ChHHHHhhcceeccccccccccHHHHHhcC------CCCCCCHHHHHHHHHHcchHHHHHhcccccccee
Q 000984 1113 QLKWLRQQMGLVSQEPVLFNDTIRANIAYG------KGGDATEAEIQAASEMANAHKFICSLQQVRTSRL 1176 (1198)
Q Consensus 1113 ~l~~LR~~IsiV~Qdp~LF~gTIreNI~~g------~~~~~tdeei~~Al~~A~l~dfI~~LP~g~dt~v 1176 (1198)
+.+=+|||-|++=.||+||-+-|- ....++|++|.+-++.+++.+.++. .+|+|+++
T Consensus 501 ------~~lfflPQrPYmt~GTLRdQvIYP~~~~~~~~~~~~d~~i~r~Le~v~L~hl~~r-~ggld~~~ 563 (659)
T KOG0060|consen 501 ------KDLFFLPQRPYMTLGTLRDQVIYPLKAEDMDSKSASDEDILRILENVQLGHLLER-EGGLDQQV 563 (659)
T ss_pred ------CceEEecCCCCccccchhheeeccCccccccccCCCHHHHHHHHHHhhhhhHHHH-hCCCCchh
Confidence 447899999999999999999873 0124899999999999999887766 58998765
|
|
| >PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=6.7e-21 Score=213.85 Aligned_cols=129 Identities=24% Similarity=0.498 Sum_probs=110.7
Q ss_pred cEEEeeeeEECCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHhhc
Q 000984 1042 EIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQM 1121 (1198)
Q Consensus 1042 ~I~f~nVsf~Y~~~~~~~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~~i~l~~LR~~I 1121 (1198)
-|+++||+++|+.....++|+|+||+|++||.+||+|++|||||||+++|+|+++|++|+|.+||.++.+.+...+|+++
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i 83 (279)
T PRK13650 4 IIEVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDIRHKI 83 (279)
T ss_pred eEEEEeEEEEcCCCCcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHHhhc
Confidence 38999999999632123599999999999999999999999999999999999999999999999999988888999999
Q ss_pred ceecccc--ccccccHHHHHhcCCCC-CCC----HHHHHHHHHHcchHHHHHhccc
Q 000984 1122 GLVSQEP--VLFNDTIRANIAYGKGG-DAT----EAEIQAASEMANAHKFICSLQQ 1170 (1198)
Q Consensus 1122 siV~Qdp--~LF~gTIreNI~~g~~~-~~t----deei~~Al~~A~l~dfI~~LP~ 1170 (1198)
++|+|+| .++..|++|||.++... ..+ ++.+.++++..++.++....|.
T Consensus 84 ~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~ 139 (279)
T PRK13650 84 GMVFQNPDNQFVGATVEDDVAFGLENKGIPHEEMKERVNEALELVGMQDFKEREPA 139 (279)
T ss_pred eEEEcChHHhcccccHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCCHhHhhCCcc
Confidence 9999998 46778999999986321 123 3457889999999988876654
|
|
| >COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.84 E-value=8.2e-21 Score=194.48 Aligned_cols=135 Identities=33% Similarity=0.522 Sum_probs=114.3
Q ss_pred cEEEeeeeEECCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCC---hHHHH
Q 000984 1042 EIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQ---LKWLR 1118 (1198)
Q Consensus 1042 ~I~f~nVsf~Y~~~~~~~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~~i~---l~~LR 1118 (1198)
-|+++||+-+||+ +..+|+||||+|++||.|||+|+||||||||++.|.|+.||++|+|.++|.++..++ +..+|
T Consensus 3 ~i~~~nl~k~yp~--~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k~lr~~r 80 (258)
T COG3638 3 MIEVKNLSKTYPG--GHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKLR 80 (258)
T ss_pred eEEEeeeeeecCC--CceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchHHHHHHH
Confidence 4899999999984 457999999999999999999999999999999999999999999999999999988 77888
Q ss_pred hhcceeccccccccc-cHHHHHhcCCCC----------CCC---HHHHHHHHHHcchHHHH----Hhccccccceeee
Q 000984 1119 QQMGLVSQEPVLFND-TIRANIAYGKGG----------DAT---EAEIQAASEMANAHKFI----CSLQQVRTSRLLL 1178 (1198)
Q Consensus 1119 ~~IsiV~Qdp~LF~g-TIreNI~~g~~~----------~~t---deei~~Al~~A~l~dfI----~~LP~g~dt~v~~ 1178 (1198)
++||+|+|.+-|-.. |+.+|+..|+.+ -.+ .....+|++.+++.|+. ..|..|-.-+|++
T Consensus 81 ~~iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~qra~~LSGGQQQRVaI 158 (258)
T COG3638 81 RDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQRASTLSGGQQQRVAI 158 (258)
T ss_pred HhceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHhccCCcchhHHHHH
Confidence 999999999998755 899999877432 123 34567889999998876 4466666655554
|
|
| >COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.84 E-value=5.9e-21 Score=204.13 Aligned_cols=136 Identities=27% Similarity=0.455 Sum_probs=116.8
Q ss_pred EEEeeeeEECCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHhhcc
Q 000984 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMG 1122 (1198)
Q Consensus 1043 I~f~nVsf~Y~~~~~~~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~~i~l~~LR~~Is 1122 (1198)
++.+|++|+|++ .++|+|+||+|++||.++|+||+|||||||+++|.|+..|.+|+|++||.||.+++.+++-++++
T Consensus 3 L~~~~ls~~y~~---~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~ia 79 (258)
T COG1120 3 LEVENLSFGYGG---KPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKLA 79 (258)
T ss_pred eEEEEEEEEECC---eeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhEE
Confidence 789999999973 46999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecccc-ccccccHHHHHhcCCCC---------CCCHHHHHHHHHHcchHHHHHh----ccccccceeeeeec
Q 000984 1123 LVSQEP-VLFNDTIRANIAYGKGG---------DATEAEIQAASEMANAHKFICS----LQQVRTSRLLLVMI 1181 (1198)
Q Consensus 1123 iV~Qdp-~LF~gTIreNI~~g~~~---------~~tdeei~~Al~~A~l~dfI~~----LP~g~dt~v~~~~~ 1181 (1198)
||||++ .-|.-|++|=+.+|+.+ +.+++.+.+|++..++.++..+ |.+|-.-.|.+.|+
T Consensus 80 ~vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~~~~LSGGerQrv~iArA 152 (258)
T COG1120 80 YVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRPVDELSGGERQRVLIARA 152 (258)
T ss_pred EeccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCcccccChhHHHHHHHHHH
Confidence 999996 56788999999999653 1123358889999999988654 56665555555443
|
|
| >COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.84 E-value=9.2e-21 Score=203.21 Aligned_cols=138 Identities=33% Similarity=0.590 Sum_probs=119.2
Q ss_pred cEEEeeeeEECCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccC-CCChHHHHhh
Q 000984 1042 EIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQ-KLQLKWLRQQ 1120 (1198)
Q Consensus 1042 ~I~f~nVsf~Y~~~~~~~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~-~i~l~~LR~~ 1120 (1198)
-|+++|++|+|+++ .++|+|+||+|++||.++|+|+||||||||+++|.+++.|++|.|.+||.|++ +.+...+|++
T Consensus 3 ~i~~~~l~~~y~~~--~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~~~~~ 80 (235)
T COG1122 3 MIEAENLSFRYPGR--KAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLELRQK 80 (235)
T ss_pred eEEEEEEEEEcCCC--ceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchhhHHHhhcc
Confidence 48999999999865 47999999999999999999999999999999999999999999999999999 5999999999
Q ss_pred cceecccc--ccccccHHHHHhcCCCC-CCCHHH----HHHHHHHcchHHHHHh----ccccccceeeeeec
Q 000984 1121 MGLVSQEP--VLFNDTIRANIAYGKGG-DATEAE----IQAASEMANAHKFICS----LQQVRTSRLLLVMI 1181 (1198)
Q Consensus 1121 IsiV~Qdp--~LF~gTIreNI~~g~~~-~~tdee----i~~Al~~A~l~dfI~~----LP~g~dt~v~~~~~ 1181 (1198)
+++|+|+| .+|..||.|.++||+.+ ..+.+| +.+|++.++++++-.. |.+|-.-+|++.-+
T Consensus 81 vG~VfQnpd~q~~~~tV~~evafg~~n~g~~~~e~~~rv~~~l~~vgl~~~~~r~p~~LSGGqkqRvaIA~v 152 (235)
T COG1122 81 VGLVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIEERVAEALELVGLEELLDRPPFNLSGGQKQRVAIAGV 152 (235)
T ss_pred eEEEEECcccccccCcHHHHHhhchhhcCCCHHHHHHHHHHHHHHcCchhhccCCccccCCcceeeHHhhHH
Confidence 99999999 89999999999999542 344544 6778999999766544 55666666665543
|
|
| >TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein | Back alignment and domain information |
|---|
Probab=99.84 E-value=6.3e-21 Score=206.51 Aligned_cols=137 Identities=28% Similarity=0.465 Sum_probs=112.2
Q ss_pred EEEeeeeEECCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChH---HHHh
Q 000984 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLK---WLRQ 1119 (1198)
Q Consensus 1043 I~f~nVsf~Y~~~~~~~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~~i~l~---~LR~ 1119 (1198)
|+++||+++|++. ..++|+|+||+|++||++||+|++|||||||+++|.|+++|++|+|.+||.++.+++.. .+|+
T Consensus 2 l~~~~l~~~~~~~-~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 80 (216)
T TIGR00960 2 IRFEQVSKAYPGG-HQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRGREIPFLRR 80 (216)
T ss_pred eEEEEEEEEecCC-CeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhcChhHHHHHHH
Confidence 7899999999632 23599999999999999999999999999999999999999999999999999877643 4788
Q ss_pred hcceecccccccc-ccHHHHHhcCC-----CCCCCHHHHHHHHHHcchHHHHHh----ccccccceeeeee
Q 000984 1120 QMGLVSQEPVLFN-DTIRANIAYGK-----GGDATEAEIQAASEMANAHKFICS----LQQVRTSRLLLVM 1180 (1198)
Q Consensus 1120 ~IsiV~Qdp~LF~-gTIreNI~~g~-----~~~~tdeei~~Al~~A~l~dfI~~----LP~g~dt~v~~~~ 1180 (1198)
++++|||++.+|. .|++||+.++. ..+..++++.++++..++.++... |+.|-..+++++.
T Consensus 81 ~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~lar 151 (216)
T TIGR00960 81 HIGMVFQDHRLLSDRTVYDNVAFPLRIIGVPPRDANERVSAALEKVGLEGKAHALPMQLSGGEQQRVAIAR 151 (216)
T ss_pred hceEEecCccccccccHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHH
Confidence 9999999999986 59999998741 111234678899999999876654 5555555555544
|
|
| >COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.1e-20 Score=185.54 Aligned_cols=226 Identities=24% Similarity=0.360 Sum_probs=171.8
Q ss_pred EEEeEEEEcCCCC-CCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCC----CCCeEEECCeecCCcCHHHHh
Q 000984 385 ELRDVYFSYPARP-NEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDP----QAGEVLIDGINLKEFQLQWIR 459 (1198)
Q Consensus 385 ~~~~v~~~y~~~~-~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~----~~G~i~i~g~~~~~~~~~~~r 459 (1198)
.++|++..+.... ...+.+++|++.+.||+-++||.||||||-+.++|+|...- +.-+.++|++|+-++++.+.|
T Consensus 5 DIrnL~IE~~TsqG~vK~VD~v~ltlnEGEi~GLVGESGSGKSLiAK~Ic~v~kdnW~vTADR~Rf~~idLL~L~Pr~RR 84 (330)
T COG4170 5 DIRNLTIEFKTSQGWVKAVDRVSMTLNEGEIRGLVGESGSGKSLIAKAICGVNKDNWRVTADRMRFDDIDLLRLSPRERR 84 (330)
T ss_pred cccceEEEEecCCCceEeeeeeeeeeccceeeeeeccCCCchhHHHHHHhcccccceEEEhhhcccccchhhcCChHHhh
Confidence 4455555543322 24588999999999999999999999999999999997643 456778899999999988877
Q ss_pred c----ceEEEcCCCCCC---cccH----HHHHhcCCCC--------CCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCC
Q 000984 460 K----KIGLVSQEPVLF---TGSI----KDNIAYGKDD--------ATTEEIRVATELANAAKFIDKLPQGIDTLVGEHG 520 (1198)
Q Consensus 460 ~----~i~~v~Q~~~l~---~~ti----~~Ni~~~~~~--------~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g 520 (1198)
+ .|++++|+|.-+ +.+| -+||-+-.-. -...+..+.+..+++.|-- .......
T Consensus 85 k~ig~~isMIFQeP~sCLDPS~~iG~QlIq~IP~wTfkgrWWq~F~WrKrrAIeLLHrVGIKdHk--------DIM~SYP 156 (330)
T COG4170 85 KLVGHNVSMIFQEPQSCLDPSERVGRQLIQNIPAWTYKGRWWQRFGWRKRRAIELLHRVGIKDHK--------DIMRSYP 156 (330)
T ss_pred hhhccchhhhhcCchhhcChHHHHHHHHHhhCccccccchHhhhhchhHHHHHHHHHHhccccHH--------HHHHhCc
Confidence 4 588999999754 2333 3454321000 0123333444555543311 0112334
Q ss_pred CCCChHHHHHHhHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh--CCCeEEEEecCcchhhc-cCEEEEEeCCE
Q 000984 521 TQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIM--VNRTTVIVAHRLSTVRN-ADMIAVIHRGK 597 (1198)
Q Consensus 521 ~~lSgGqkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~--~~~t~i~itH~~~~~~~-~d~i~~l~~G~ 597 (1198)
..|--|+-|++.||-|+..+|++||-||||.++|+.|..+|++.+..+- ++.|+++++|++..+.. ||+|-||--|+
T Consensus 157 ~ElTeGE~QKVMIA~A~AnqPrLLIADEPTN~~e~~Tq~QifRLLs~mNQn~~TtILL~s~Dl~~is~W~d~i~VlYCGQ 236 (330)
T COG4170 157 YELTEGECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLSRLNQNSNTTILLISHDLQMISQWADKINVLYCGQ 236 (330)
T ss_pred chhccCcceeeeeehhhccCCceEeccCCCcccCccHHHHHHHHHHHhhccCCceEEEEcccHHHHHHHhhheEEEEecc
Confidence 5677889999999999999999999999999999999999999987765 35788999999999976 99999999999
Q ss_pred EEEecChhhHhcCCCchhHHH
Q 000984 598 IVEKGTHSKLVEDPEGAYSQL 618 (1198)
Q Consensus 598 i~~~g~~~~l~~~~~~~~~~~ 618 (1198)
-+|.+..+++++.+...|.+.
T Consensus 237 ~~ESa~~e~l~~~PhHPYTqA 257 (330)
T COG4170 237 TVESAPSEELVTMPHHPYTQA 257 (330)
T ss_pred cccccchhHHhcCCCCchHHH
Confidence 999999999999887777654
|
|
| >TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.83 E-value=8.6e-21 Score=216.57 Aligned_cols=138 Identities=20% Similarity=0.356 Sum_probs=112.2
Q ss_pred EEEeeeeEECCCCC-CccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHH---HH
Q 000984 1043 IELHHVSFKYPSRP-DVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKW---LR 1118 (1198)
Q Consensus 1043 I~f~nVsf~Y~~~~-~~~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~~i~l~~---LR 1118 (1198)
|+|+||+++|+++. ..++|+||||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.|+.+++..+ +|
T Consensus 2 I~~~~lsk~y~~~~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~~~~l~~~r 81 (343)
T TIGR02314 2 IKLSNITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKAR 81 (343)
T ss_pred EEEEEEEEEECCCCcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHh
Confidence 79999999996321 246999999999999999999999999999999999999999999999999999887655 57
Q ss_pred hhcceecccccccc-ccHHHHHhcCCC-CCCC----HHHHHHHHHHcchHHHHHhcc----ccccceeeeee
Q 000984 1119 QQMGLVSQEPVLFN-DTIRANIAYGKG-GDAT----EAEIQAASEMANAHKFICSLQ----QVRTSRLLLVM 1180 (1198)
Q Consensus 1119 ~~IsiV~Qdp~LF~-gTIreNI~~g~~-~~~t----deei~~Al~~A~l~dfI~~LP----~g~dt~v~~~~ 1180 (1198)
++|++|||++.||. .|++||+.++.. ...+ ++.+.++++.+++.++..+.| .|-.-+|++..
T Consensus 82 ~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~~~~~~~~~~LSgGqkQRV~IAR 153 (343)
T TIGR02314 82 RQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKRKVTELLALVGLGDKHDSYPSNLSGGQKQRVAIAR 153 (343)
T ss_pred cCEEEEECCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHH
Confidence 89999999999995 799999997521 1122 345778899999987766554 44444444443
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. |
| >COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.83 E-value=9.3e-21 Score=185.03 Aligned_cols=123 Identities=29% Similarity=0.485 Sum_probs=107.7
Q ss_pred EEEeeeeEECCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHhhcc
Q 000984 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMG 1122 (1198)
Q Consensus 1043 I~f~nVsf~Y~~~~~~~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~~i~l~~LR~~Is 1122 (1198)
|.+++|.|+|..-+ =.++++|++||+|||+||||||||||+||+.+|..|++|+|+|+|+|....++. ++-+|
T Consensus 2 l~L~~V~~~y~~~~-----~~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~~P~--~RPVS 74 (231)
T COG3840 2 LALDDVRFSYGHLP-----MRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPA--ERPVS 74 (231)
T ss_pred ccccceEEeeCcce-----EEEEEeecCCcEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCcCCcc--cCChh
Confidence 56789999996432 368899999999999999999999999999999999999999999999888775 57899
Q ss_pred eeccccccc-cccHHHHHhcCCCCC-----CCHHHHHHHHHHcchHHHHHhccccc
Q 000984 1123 LVSQEPVLF-NDTIRANIAYGKGGD-----ATEAEIQAASEMANAHKFICSLQQVR 1172 (1198)
Q Consensus 1123 iV~Qdp~LF-~gTIreNI~~g~~~~-----~tdeei~~Al~~A~l~dfI~~LP~g~ 1172 (1198)
+++||.-|| +=||++||.+|..|. ...+.+..|+.++++.+|...||..+
T Consensus 75 mlFQEnNLFaHLtV~qNigLGl~P~LkL~a~~r~~v~~aa~~vGl~~~~~RLP~~L 130 (231)
T COG3840 75 MLFQENNLFAHLTVAQNIGLGLSPGLKLNAEQREKVEAAAAQVGLAGFLKRLPGEL 130 (231)
T ss_pred hhhhccccchhhhhhhhhcccCCcccccCHHHHHHHHHHHHHhChhhHhhhCcccc
Confidence 999999999 559999999996442 23466899999999999999999744
|
|
| >PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.4e-20 Score=210.54 Aligned_cols=127 Identities=29% Similarity=0.540 Sum_probs=110.0
Q ss_pred cEEEeeeeEECCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHhhc
Q 000984 1042 EIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQM 1121 (1198)
Q Consensus 1042 ~I~f~nVsf~Y~~~~~~~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~~i~l~~LR~~I 1121 (1198)
-|+++||+++|+. +.++|+|+||+|++||++||+|++|||||||+++|.|+++|++|+|.+||.++.+.+...+|++|
T Consensus 4 ~l~~~~l~~~~~~--~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i 81 (274)
T PRK13647 4 IIEVEDLHFRYKD--GTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVRSKV 81 (274)
T ss_pred eEEEEEEEEEeCC--CCeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHhhE
Confidence 3899999999963 23599999999999999999999999999999999999999999999999999988888999999
Q ss_pred ceecccc--ccccccHHHHHhcCCCC-CCC----HHHHHHHHHHcchHHHHHhccc
Q 000984 1122 GLVSQEP--VLFNDTIRANIAYGKGG-DAT----EAEIQAASEMANAHKFICSLQQ 1170 (1198)
Q Consensus 1122 siV~Qdp--~LF~gTIreNI~~g~~~-~~t----deei~~Al~~A~l~dfI~~LP~ 1170 (1198)
++|||+| .+|..|+++||.++... ..+ ++++.++++..++.++..+.|.
T Consensus 82 ~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~ 137 (274)
T PRK13647 82 GLVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRVEEALKAVRMWDFRDKPPY 137 (274)
T ss_pred EEEecChhhhhccCcHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCChh
Confidence 9999998 68899999999986321 122 3567888999999887665554
|
|
| >COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.7e-20 Score=192.69 Aligned_cols=136 Identities=28% Similarity=0.430 Sum_probs=111.6
Q ss_pred cEEEeeeeEECCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChH---HHH
Q 000984 1042 EIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLK---WLR 1118 (1198)
Q Consensus 1042 ~I~f~nVsf~Y~~~~~~~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~~i~l~---~LR 1118 (1198)
-|++++|+++|.+ ..||+||||+|++||.+||+|+||||||||++++.|+..|++|+|+|+|.||.+++-+ .+|
T Consensus 8 ~I~vr~v~~~fG~---~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~~~~ir 84 (263)
T COG1127 8 LIEVRGVTKSFGD---RVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYEIR 84 (263)
T ss_pred eEEEeeeeeecCC---EEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHHHHHHH
Confidence 5999999999964 4699999999999999999999999999999999999999999999999999998764 569
Q ss_pred hhcceeccccccccc-cHHHHHhcCCC--CCCCHHHHHH----HHHHcchHHH-HHh----ccccccceeeeee
Q 000984 1119 QQMGLVSQEPVLFND-TIRANIAYGKG--GDATEAEIQA----ASEMANAHKF-ICS----LQQVRTSRLLLVM 1180 (1198)
Q Consensus 1119 ~~IsiV~Qdp~LF~g-TIreNI~~g~~--~~~tdeei~~----Al~~A~l~df-I~~----LP~g~dt~v~~~~ 1180 (1198)
+++|+++|..-||+. ||+||+.|--. .+.+++++++ -++.+++..- -+. |..|+.-+++|.=
T Consensus 85 ~r~GvlFQ~gALFssltV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~PsELSGGM~KRvaLAR 158 (263)
T COG1127 85 KRMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADLYPSELSGGMRKRVALAR 158 (263)
T ss_pred hheeEEeeccccccccchhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhhhhhCchhhcchHHHHHHHHH
Confidence 999999999999966 99999987211 1345555544 4677887766 333 4456666666543
|
|
| >COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.82 E-value=8.4e-20 Score=201.33 Aligned_cols=171 Identities=23% Similarity=0.458 Sum_probs=132.8
Q ss_pred cccceeEEE-----eCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcceEEEcCCC-CCCcc
Q 000984 401 IFSGFSISI-----SSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEP-VLFTG 474 (1198)
Q Consensus 401 ~l~~i~l~i-----~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~-~l~~~ 474 (1198)
.+.+..|++ ..||.++++||||-||||++++|.|.++|++|. ..+ -+++|=||-- .-|+|
T Consensus 351 ~~g~F~L~V~~G~i~~gEvigilGpNgiGKTTFvk~LAG~ikPdeg~----~~~----------~~vSyKPQyI~~~~~g 416 (591)
T COG1245 351 TYGDFKLEVEEGEIYDGEVIGILGPNGIGKTTFVKLLAGVIKPDEGS----EED----------LKVSYKPQYISPDYDG 416 (591)
T ss_pred ecCceEEEecCCeeecceEEEEECCCCcchHHHHHHHhccccCCCCC----Ccc----------ceEeecceeecCCCCC
Confidence 455666655 457899999999999999999999999999998 212 1799999953 24899
Q ss_pred cHHHHHhcCCCC-CCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhhccCCCEEEEeCCCCCC
Q 000984 475 SIKDNIAYGKDD-ATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSAL 553 (1198)
Q Consensus 475 ti~~Ni~~~~~~-~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal~~~~~illlDe~ts~l 553 (1198)
||++-+.-..+. .....++. +.++ |-.++..+.....+||||+.||+|+|-||.+++|+|+||||+|.|
T Consensus 417 tV~~~l~~~~~~~~~~s~~~~--------ei~~--pl~l~~i~e~~v~~LSGGELQRvaIaa~L~reADlYllDEPSA~L 486 (591)
T COG1245 417 TVEDLLRSAIRSAFGSSYFKT--------EIVK--PLNLEDLLERPVDELSGGELQRVAIAAALSREADLYLLDEPSAYL 486 (591)
T ss_pred cHHHHHHHhhhhhcccchhHH--------hhcC--ccchHHHHhcccccCCchhHHHHHHHHHhccccCEEEecCchhhc
Confidence 999887643322 22222221 1111 235555666677789999999999999999999999999999999
Q ss_pred CHHhHHHHHHHHHHHh--CCCeEEEEecCcchhhc-cCEEEEEeC
Q 000984 554 DAESEKVVQEALDRIM--VNRTTVIVAHRLSTVRN-ADMIAVIHR 595 (1198)
Q Consensus 554 D~~~~~~i~~~i~~~~--~~~t~i~itH~~~~~~~-~d~i~~l~~ 595 (1198)
|.+..-.+-+.|++.. .++|.++|-|++-.+.. +||++|.++
T Consensus 487 DvEqR~~vakvIRR~~e~~~kta~vVdHDi~~~dyvsDr~ivF~G 531 (591)
T COG1245 487 DVEQRIIVAKVIRRFIENNEKTALVVDHDIYMIDYVSDRLIVFEG 531 (591)
T ss_pred cHHHHHHHHHHHHHHHhhcCceEEEEecceehhhhhhceEEEEec
Confidence 9998877788887765 46899999999999887 899999863
|
|
| >cd03290 ABCC_SUR1_N The SUR domain 1 | Back alignment and domain information |
|---|
Probab=99.82 E-value=3.7e-20 Score=200.73 Aligned_cols=129 Identities=19% Similarity=0.317 Sum_probs=112.7
Q ss_pred EEeeeeEECCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCCh----HHHHh
Q 000984 1044 ELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQL----KWLRQ 1119 (1198)
Q Consensus 1044 ~f~nVsf~Y~~~~~~~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~~i~l----~~LR~ 1119 (1198)
.+.|+.|+|+.+ .++|+|+||+|++||.++|+|++|||||||+++|.|+++|++|+|.+||.++.+.+. ...|+
T Consensus 2 ~~~~~~~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 79 (218)
T cd03290 2 QVTNGYFSWGSG--LATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSRNRY 79 (218)
T ss_pred eeeeeEEecCCC--CcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCcccccccccccchhhcc
Confidence 567899999743 469999999999999999999999999999999999999999999999999877653 34678
Q ss_pred hcceeccccccccccHHHHHhcCCCCCCCHHHHHHHHHHcchHHHHHhcccccccee
Q 000984 1120 QMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQVRTSRL 1176 (1198)
Q Consensus 1120 ~IsiV~Qdp~LF~gTIreNI~~g~~~~~tdeei~~Al~~A~l~dfI~~LP~g~dt~v 1176 (1198)
.+++++|+|.+|+.|++|||.++. ..++++..++++..++.+++..+|.|+++.+
T Consensus 80 ~i~~~~q~~~~~~~t~~~nl~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 134 (218)
T cd03290 80 SVAYAAQKPWLLNATVEENITFGS--PFNKQRYKAVTDACSLQPDIDLLPFGDQTEI 134 (218)
T ss_pred eEEEEcCCCccccccHHHHHhhcC--cCCHHHHHHHHHHhCcHHHHHhCcCccccCc
Confidence 899999999999999999999863 3456777888999999999998888887753
|
The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. |
| >COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.4e-20 Score=195.16 Aligned_cols=130 Identities=28% Similarity=0.414 Sum_probs=110.1
Q ss_pred cEEEeeeeEECCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHhhc
Q 000984 1042 EIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQM 1121 (1198)
Q Consensus 1042 ~I~f~nVsf~Y~~~~~~~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~~i~l~~LR~~I 1121 (1198)
.+++++|+.+|++ ..||+||||+|++||.|+||||||||||||++++.||..|++|+|.+||.++..-. ..+
T Consensus 3 ~l~i~~v~~~f~~---~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~p~-----~~~ 74 (248)
T COG1116 3 LLEIEGVSKSFGG---VEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGPG-----PDI 74 (248)
T ss_pred eEEEEeeEEEeCc---eEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCCCC-----CCE
Confidence 4899999999974 46999999999999999999999999999999999999999999999999985543 578
Q ss_pred ceecccccccc-ccHHHHHhcCCCCC-----CCHHHHHHHHHHcchHHHHHhccc----cccceeeee
Q 000984 1122 GLVSQEPVLFN-DTIRANIAYGKGGD-----ATEAEIQAASEMANAHKFICSLQQ----VRTSRLLLV 1179 (1198)
Q Consensus 1122 siV~Qdp~LF~-gTIreNI~~g~~~~-----~tdeei~~Al~~A~l~dfI~~LP~----g~dt~v~~~ 1179 (1198)
+||+|++.||. -|++||+.+|.... -..+.+.++++.+++.+|-.+.|. |..-+|++.
T Consensus 75 ~~vFQ~~~LlPW~Tv~~NV~l~l~~~~~~~~e~~~~a~~~L~~VgL~~~~~~~P~qLSGGMrQRVaiA 142 (248)
T COG1116 75 GYVFQEDALLPWLTVLDNVALGLELRGKSKAEARERAKELLELVGLAGFEDKYPHQLSGGMRQRVAIA 142 (248)
T ss_pred EEEeccCcccchhhHHhhheehhhccccchHhHHHHHHHHHHHcCCcchhhcCccccChHHHHHHHHH
Confidence 99999999995 69999999874211 123468889999999999998886 445555543
|
|
| >PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.7e-20 Score=211.70 Aligned_cols=139 Identities=21% Similarity=0.352 Sum_probs=109.7
Q ss_pred cEEEeeeeEECCCCC--CccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCC-------
Q 000984 1042 EIELHHVSFKYPSRP--DVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKL------- 1112 (1198)
Q Consensus 1042 ~I~f~nVsf~Y~~~~--~~~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~~i------- 1112 (1198)
-|+++||+|+|+... +.++|+||||+|++||++||+|+||||||||+++|.|+++|++|+|++||+++.+.
T Consensus 21 ~l~~~nl~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~~~~~~~~~~~~~ 100 (320)
T PRK13631 21 ILRVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNHELI 100 (320)
T ss_pred eEEEEeEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCEEccccccccccc
Confidence 499999999997421 23699999999999999999999999999999999999999999999999999753
Q ss_pred ---------ChHHHHhhcceecccc--ccccccHHHHHhcCCC-CCCCHHH----HHHHHHHcchH-HHHH----hcccc
Q 000984 1113 ---------QLKWLRQQMGLVSQEP--VLFNDTIRANIAYGKG-GDATEAE----IQAASEMANAH-KFIC----SLQQV 1171 (1198)
Q Consensus 1113 ---------~l~~LR~~IsiV~Qdp--~LF~gTIreNI~~g~~-~~~tdee----i~~Al~~A~l~-dfI~----~LP~g 1171 (1198)
+...+|++|++|+|+| .+|++|++|||.++.. ...++++ +.++++..++. ++.. .|+.|
T Consensus 101 ~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgG 180 (320)
T PRK13631 101 TNPYSKKIKNFKELRRRVSMVFQFPEYQLFKDTIEKDIMFGPVALGVKKSEAKKLAKFYLNKMGLDDSYLERSPFGLSGG 180 (320)
T ss_pred ccccccccchHHHHHhcEEEEEECchhccccchHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCHH
Confidence 4567899999999998 7999999999998732 1233333 44566777774 3433 35555
Q ss_pred ccceeeeee
Q 000984 1172 RTSRLLLVM 1180 (1198)
Q Consensus 1172 ~dt~v~~~~ 1180 (1198)
-.-++++..
T Consensus 181 qkqRvaiAr 189 (320)
T PRK13631 181 QKRRVAIAG 189 (320)
T ss_pred HHHHHHHHH
Confidence 555555443
|
|
| >cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.82 E-value=5.3e-20 Score=194.96 Aligned_cols=172 Identities=19% Similarity=0.213 Sum_probs=117.7
Q ss_pred ccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCc-CHHHHhcceEEEcCCCCCCcccHHHHH
Q 000984 402 FSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEF-QLQWIRKKIGLVSQEPVLFTGSIKDNI 480 (1198)
Q Consensus 402 l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~-~~~~~r~~i~~v~Q~~~l~~~ti~~Ni 480 (1198)
++++++++.+| +.+|+||||||||||+.+|.-.+....+ ....|....++ ....-...|.+.+|+.-++. |
T Consensus 12 ~~~~~l~f~~g-l~~i~G~NGsGKStll~ai~~~l~~~~~-~~~r~~~~~~~i~~~~~~~~i~~~~~~~~~~~-----~- 83 (198)
T cd03276 12 HRHLQIEFGPR-VNFIVGNNGSGKSAILTALTIGLGGKAS-DTNRGSSLKDLIKDGESSAKITVTLKNQGLDA-----N- 83 (198)
T ss_pred eeeeEEecCCC-eEEEECCCCCcHHHHHHHHHHHhcCCcc-cccccccHHHHhhCCCCeEEEEEEEEcCCccC-----C-
Confidence 35677787777 7899999999999999998744322211 00112111110 00111356888888765554 2
Q ss_pred hcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhh----ccCCCEEEEeCCCCCCCHH
Q 000984 481 AYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAI----LKDPRILLLDEATSALDAE 556 (1198)
Q Consensus 481 ~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal----~~~~~illlDe~ts~lD~~ 556 (1198)
+ ..... ...+.++++. .....+...+||+|||||++||||+ +.+|+++||||||++||..
T Consensus 84 ----~-~~~~~------~~~~~~~l~~-----~~~~~~~~~~lS~G~k~r~~ia~al~~~~~~~p~illlDEP~~glD~~ 147 (198)
T cd03276 84 ----P-LCVLS------QDMARSFLTS-----NKAAVRDVKTLSGGERSFSTVCLLLSLWEVMESPFRCLDEFDVFMDMV 147 (198)
T ss_pred ----c-CCHHH------HHHHHHHhcc-----ccccCCcccccChhHHHHHHHHHHHHHhcccCCCEEEecCcccccCHH
Confidence 1 11111 1122233333 2223455678999999999999999 6999999999999999999
Q ss_pred hHHHHHHHHHHHhC----CCeEEEEecCcchhhccCEEEEEeCCE
Q 000984 557 SEKVVQEALDRIMV----NRTTVIVAHRLSTVRNADMIAVIHRGK 597 (1198)
Q Consensus 557 ~~~~i~~~i~~~~~----~~t~i~itH~~~~~~~~d~i~~l~~G~ 597 (1198)
+...+.+.|.+..+ ++|+|++||+++.+...|+|-+|..++
T Consensus 148 ~~~~~~~~l~~~~~~~~~~~~iii~th~~~~i~~~d~v~~~~~~~ 192 (198)
T cd03276 148 NRKISTDLLVKEAKKQPGRQFIFITPQDISGLASSDDVKVFRMKD 192 (198)
T ss_pred HHHHHHHHHHHHHhcCCCcEEEEEECCcccccccccceeEEEecC
Confidence 99999998887643 258899999999999999999998653
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for |
| >PRK14269 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.3e-20 Score=206.12 Aligned_cols=135 Identities=27% Similarity=0.429 Sum_probs=112.0
Q ss_pred cEEEeeeeEECCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccC---CCCCeEEECCcccCCCChHHHH
Q 000984 1042 EIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYD---PDAGHITLDGVEIQKLQLKWLR 1118 (1198)
Q Consensus 1042 ~I~f~nVsf~Y~~~~~~~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~yd---p~~G~I~IDG~dI~~i~l~~LR 1118 (1198)
.|+++||+++|++ .++|+|+||+|++||.+||+|++|||||||+++|.|+++ |++|+|.+||.|+.+.+...+|
T Consensus 2 ~~~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~ 78 (246)
T PRK14269 2 IAKTTNLNLFYGK---KQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALR 78 (246)
T ss_pred ceeeeeeEEEECC---EeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHHh
Confidence 3889999999963 359999999999999999999999999999999999985 6899999999999998888899
Q ss_pred hhcceeccccccccccHHHHHhcCCC-------CCCCHHHHHHHHHHcchHHHH--------Hhccccccceeeee
Q 000984 1119 QQMGLVSQEPVLFNDTIRANIAYGKG-------GDATEAEIQAASEMANAHKFI--------CSLQQVRTSRLLLV 1179 (1198)
Q Consensus 1119 ~~IsiV~Qdp~LF~gTIreNI~~g~~-------~~~tdeei~~Al~~A~l~dfI--------~~LP~g~dt~v~~~ 1179 (1198)
++|+++||+|.+|..|++||+.++.. ....++++.++++..++++++ .+|..|-..++++.
T Consensus 79 ~~i~~~~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la 154 (246)
T PRK14269 79 KNVGMVFQQPNVFVKSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKDKLKQNALALSGGQQQRLCIA 154 (246)
T ss_pred hhEEEEecCCccccccHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhhhHHhcCCcccCCHHHHHHHHHH
Confidence 99999999999999999999987521 011234577889999986544 33555555555544
|
|
| >cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.4e-20 Score=204.64 Aligned_cols=136 Identities=28% Similarity=0.434 Sum_probs=111.8
Q ss_pred EEEeeeeEECCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCCh---HHHHh
Q 000984 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQL---KWLRQ 1119 (1198)
Q Consensus 1043 I~f~nVsf~Y~~~~~~~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~~i~l---~~LR~ 1119 (1198)
|+++||+++|++ .++|+|+||+|++||.+||+||+|||||||+++|.|+++|++|+|.+||.++.+.+. ..+|+
T Consensus 1 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~ 77 (235)
T cd03261 1 IELRGLTKSFGG---RTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRLRR 77 (235)
T ss_pred CeEEEEEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccChhhHHHHhc
Confidence 578999999963 359999999999999999999999999999999999999999999999999988764 57889
Q ss_pred hcceeccccccccc-cHHHHHhcCCC--CCCC----HHHHHHHHHHcchHHHHHh----ccccccceeeeeec
Q 000984 1120 QMGLVSQEPVLFND-TIRANIAYGKG--GDAT----EAEIQAASEMANAHKFICS----LQQVRTSRLLLVMI 1181 (1198)
Q Consensus 1120 ~IsiV~Qdp~LF~g-TIreNI~~g~~--~~~t----deei~~Al~~A~l~dfI~~----LP~g~dt~v~~~~~ 1181 (1198)
+|++|||++.+|.+ |++||+.++.. ...+ ++++.++++..++.++..+ |..|-.-+++++.+
T Consensus 78 ~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~ia~a 150 (235)
T cd03261 78 RMGMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLRGAEDLYPAELSGGMKKRVALARA 150 (235)
T ss_pred ceEEEccCcccCCCCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHH
Confidence 99999999999986 99999987521 1123 2356778888888776544 56666666655443
|
The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.8e-20 Score=203.80 Aligned_cols=139 Identities=24% Similarity=0.356 Sum_probs=111.6
Q ss_pred cEEEeeeeEECCCCC-CccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHH---H
Q 000984 1042 EIELHHVSFKYPSRP-DVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKW---L 1117 (1198)
Q Consensus 1042 ~I~f~nVsf~Y~~~~-~~~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~~i~l~~---L 1117 (1198)
-|+++||+++|+++. ..++|+|+||+|++||.+||+|++|||||||+++|.|+++|++|+|++||.|+.+++... +
T Consensus 5 ~l~~~~l~~~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~ 84 (233)
T PRK11629 5 LLQCDNLCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAEL 84 (233)
T ss_pred eEEEEeEEEEcCCCCcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCHHHHHHH
Confidence 389999999997421 146999999999999999999999999999999999999999999999999999887654 3
Q ss_pred H-hhcceeccccccccc-cHHHHHhcCC----C-CCCCHHHHHHHHHHcchHHHHH----hccccccceeeeee
Q 000984 1118 R-QQMGLVSQEPVLFND-TIRANIAYGK----G-GDATEAEIQAASEMANAHKFIC----SLQQVRTSRLLLVM 1180 (1198)
Q Consensus 1118 R-~~IsiV~Qdp~LF~g-TIreNI~~g~----~-~~~tdeei~~Al~~A~l~dfI~----~LP~g~dt~v~~~~ 1180 (1198)
| +++++|||++.+|.+ |++||+.++. . .+..++++.++++..++.++.. +|..|-.-+++++.
T Consensus 85 ~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrl~la~ 158 (233)
T PRK11629 85 RNQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEINSRALEMLAAVGLEHRANHRPSELSGGERQRVAIAR 158 (233)
T ss_pred HhccEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHH
Confidence 3 679999999999975 9999998631 0 1112346788899998876654 45556555555544
|
|
| >PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=3e-20 Score=208.37 Aligned_cols=127 Identities=29% Similarity=0.544 Sum_probs=110.2
Q ss_pred EEEeeeeEECCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHhhcc
Q 000984 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMG 1122 (1198)
Q Consensus 1043 I~f~nVsf~Y~~~~~~~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~~i~l~~LR~~Is 1122 (1198)
|+++||+++|++. ..++|+|+||+|++||.+||+|++|||||||+++|+|+++|++|+|.+||.++.+.+...+|+.|+
T Consensus 6 l~~~~l~~~~~~~-~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~~~~~~~~~~i~ 84 (279)
T PRK13635 6 IRVEHISFRYPDA-ATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDVRRQVG 84 (279)
T ss_pred EEEEEEEEEeCCC-CccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHhhheE
Confidence 8999999999642 346999999999999999999999999999999999999999999999999999888888899999
Q ss_pred eecccc--ccccccHHHHHhcCCCC-CCC----HHHHHHHHHHcchHHHHHhccc
Q 000984 1123 LVSQEP--VLFNDTIRANIAYGKGG-DAT----EAEIQAASEMANAHKFICSLQQ 1170 (1198)
Q Consensus 1123 iV~Qdp--~LF~gTIreNI~~g~~~-~~t----deei~~Al~~A~l~dfI~~LP~ 1170 (1198)
+|||+| .+++.|++|||.++... ..+ ++++.++++..++.+++...|.
T Consensus 85 ~~~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~ 139 (279)
T PRK13635 85 MVFQNPDNQFVGATVQDDVAFGLENIGVPREEMVERVDQALRQVGMEDFLNREPH 139 (279)
T ss_pred EEEeCHHHhcccccHHHHHhhhHhhCCCCHHHHHHHHHHHHHHcCChhhhhCCcc
Confidence 999998 57788999999875211 123 3457888999999998887665
|
|
| >cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.4e-20 Score=203.65 Aligned_cols=136 Identities=34% Similarity=0.523 Sum_probs=112.5
Q ss_pred EEEeeeeEECCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhccc-----CCCCCeEEECCcccCCCC--hH
Q 000984 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFY-----DPDAGHITLDGVEIQKLQ--LK 1115 (1198)
Q Consensus 1043 I~f~nVsf~Y~~~~~~~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~y-----dp~~G~I~IDG~dI~~i~--l~ 1115 (1198)
|+++||+++|++ .++|+|+||+|++||++||+|++|||||||+++|.|++ +|++|+|.+||.++.+++ ..
T Consensus 1 i~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 77 (227)
T cd03260 1 IELRDLNVYYGD---KHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVL 77 (227)
T ss_pred CEEEEEEEEcCC---ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcchHHH
Confidence 578999999964 35999999999999999999999999999999999999 999999999999998877 67
Q ss_pred HHHhhcceeccccccccccHHHHHhcCCCC-C-C----CHHHHHHHHHHcchHHHHH------hccccccceeeeeec
Q 000984 1116 WLRQQMGLVSQEPVLFNDTIRANIAYGKGG-D-A----TEAEIQAASEMANAHKFIC------SLQQVRTSRLLLVMI 1181 (1198)
Q Consensus 1116 ~LR~~IsiV~Qdp~LF~gTIreNI~~g~~~-~-~----tdeei~~Al~~A~l~dfI~------~LP~g~dt~v~~~~~ 1181 (1198)
.+|+++++|||++.+|..|++||+.++... . . .++++.++++..++.+... .|..|-..+++++.+
T Consensus 78 ~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~la~a 155 (227)
T cd03260 78 ELRRRVGMVFQKPNPFPGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWDEVKDRLHALGLSGGQQQRLCLARA 155 (227)
T ss_pred HHHhhEEEEecCchhccccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCChHHhccCCcccCCHHHHHHHHHHHH
Confidence 789999999999999999999999875211 1 1 2456788899988877654 455555555555443
|
The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). |
| >cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake | Back alignment and domain information |
|---|
Probab=99.82 E-value=3.9e-20 Score=200.70 Aligned_cols=138 Identities=22% Similarity=0.433 Sum_probs=112.2
Q ss_pred EEEeeeeEECCCCCC-ccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHhhc
Q 000984 1043 IELHHVSFKYPSRPD-VQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQM 1121 (1198)
Q Consensus 1043 I~f~nVsf~Y~~~~~-~~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~~i~l~~LR~~I 1121 (1198)
|+++||+++|++... .++|+|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.+||.++.. ....+|+++
T Consensus 2 l~~~~v~~~~~~~~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~-~~~~~~~~i 80 (218)
T cd03266 2 ITADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVK-EPAEARRRL 80 (218)
T ss_pred eEEEEEEEecCCCCccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEccc-CHHHHHhhE
Confidence 789999999974311 169999999999999999999999999999999999999999999999999976 456788999
Q ss_pred ceeccccccccc-cHHHHHhcCCC-CC----CCHHHHHHHHHHcchHHHH----Hhccccccceeeeeec
Q 000984 1122 GLVSQEPVLFND-TIRANIAYGKG-GD----ATEAEIQAASEMANAHKFI----CSLQQVRTSRLLLVMI 1181 (1198)
Q Consensus 1122 siV~Qdp~LF~g-TIreNI~~g~~-~~----~tdeei~~Al~~A~l~dfI----~~LP~g~dt~v~~~~~ 1181 (1198)
+++||+|.+|.+ |++||+.+... .. ..++++.++++..++.++. .+|+.|-..+++++.+
T Consensus 81 ~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~lara 150 (218)
T cd03266 81 GFVSDSTGLYDRLTARENLEYFAGLYGLKGDELTARLEELADRLGMEELLDRRVGGFSTGMRQKVAIARA 150 (218)
T ss_pred EEecCCcccCcCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhhhhhhcCHHHHHHHHHHHH
Confidence 999999999985 99999976311 01 1245678889998886654 4566676666665544
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein. |
| >PRK14250 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=4.5e-20 Score=203.06 Aligned_cols=137 Identities=30% Similarity=0.572 Sum_probs=114.7
Q ss_pred cEEEeeeeEECCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHhhc
Q 000984 1042 EIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQM 1121 (1198)
Q Consensus 1042 ~I~f~nVsf~Y~~~~~~~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~~i~l~~LR~~I 1121 (1198)
.|+++||+++|++ .++|+|+||+|++||.+||+|++|||||||+++|+|+++|++|+|.+||.|+..++...+|+++
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i 79 (241)
T PRK14250 3 EIEFKEVSYSSFG---KEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDLRRKI 79 (241)
T ss_pred eEEEEeEEEEeCC---eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcChHHhhhcE
Confidence 4899999999963 3599999999999999999999999999999999999999999999999999988888899999
Q ss_pred ceeccccccccccHHHHHhcCCC-CCCCHHHHHHHHHHcchH-HHH----Hhccccccceeeeeec
Q 000984 1122 GLVSQEPVLFNDTIRANIAYGKG-GDATEAEIQAASEMANAH-KFI----CSLQQVRTSRLLLVMI 1181 (1198)
Q Consensus 1122 siV~Qdp~LF~gTIreNI~~g~~-~~~tdeei~~Al~~A~l~-dfI----~~LP~g~dt~v~~~~~ 1181 (1198)
+++||++.+|+.|++||+.++.. ....++++.++++..++. ++. ..|..|-..++++..+
T Consensus 80 ~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~la~a 145 (241)
T PRK14250 80 GMVFQQPHLFEGTVKDNIEYGPMLKGEKNVDVEYYLSIVGLNKEYATRDVKNLSGGEAQRVSIART 145 (241)
T ss_pred EEEecCchhchhhHHHHHhcchhhcCcHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHHHH
Confidence 99999999999999999987632 112345678888888884 443 4466666666655443
|
|
| >TIGR02673 FtsE cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Probab=99.82 E-value=3.6e-20 Score=200.41 Aligned_cols=137 Identities=28% Similarity=0.447 Sum_probs=113.0
Q ss_pred EEEeeeeEECCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChH---HHHh
Q 000984 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLK---WLRQ 1119 (1198)
Q Consensus 1043 I~f~nVsf~Y~~~~~~~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~~i~l~---~LR~ 1119 (1198)
|+++|++++|++ +.++|+|+||+|++||.+||+|++|||||||+++|+|+++|++|+|.+||.|+.+++.. .+|+
T Consensus 2 l~~~~l~~~~~~--~~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 79 (214)
T TIGR02673 2 IEFHNVSKAYPG--GVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLLRR 79 (214)
T ss_pred EEEEeeeEEeCC--CceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHh
Confidence 789999999952 23699999999999999999999999999999999999999999999999999887643 4788
Q ss_pred hcceecccccccc-ccHHHHHhcCC-----CCCCCHHHHHHHHHHcchHHHHH----hccccccceeeeeec
Q 000984 1120 QMGLVSQEPVLFN-DTIRANIAYGK-----GGDATEAEIQAASEMANAHKFIC----SLQQVRTSRLLLVMI 1181 (1198)
Q Consensus 1120 ~IsiV~Qdp~LF~-gTIreNI~~g~-----~~~~tdeei~~Al~~A~l~dfI~----~LP~g~dt~v~~~~~ 1181 (1198)
+++++||+|.+|. .|++||+.++. .+...+++++++++..++.++.. +|..|...+++++.+
T Consensus 80 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~a 151 (214)
T TIGR02673 80 RIGVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRRVGAALRQVGLEHKADAFPEQLSGGEQQRVAIARA 151 (214)
T ss_pred heEEEecChhhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHH
Confidence 9999999999995 69999998741 11123467889999999987765 455565666665543
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein. |
| >PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=4.7e-20 Score=206.36 Aligned_cols=137 Identities=27% Similarity=0.552 Sum_probs=112.2
Q ss_pred cEEEeeeeEECCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHhhc
Q 000984 1042 EIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQM 1121 (1198)
Q Consensus 1042 ~I~f~nVsf~Y~~~~~~~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~~i~l~~LR~~I 1121 (1198)
-|+++|++++|+++ +.++|+|+||+|++||.+||+||+|||||||+++|+|+++|++|+|.+||.++.+.+...+|+++
T Consensus 7 ~l~~~nl~~~~~~~-~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i 85 (271)
T PRK13632 7 MIKVENVSFSYPNS-ENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKEIRKKI 85 (271)
T ss_pred EEEEEeEEEEcCCC-CccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCcCCHHHHhcce
Confidence 48999999999632 34699999999999999999999999999999999999999999999999999888888899999
Q ss_pred ceecccc--ccccccHHHHHhcCCCC-CCCHH----HHHHHHHHcchHHHHHhcc----ccccceeeee
Q 000984 1122 GLVSQEP--VLFNDTIRANIAYGKGG-DATEA----EIQAASEMANAHKFICSLQ----QVRTSRLLLV 1179 (1198)
Q Consensus 1122 siV~Qdp--~LF~gTIreNI~~g~~~-~~tde----ei~~Al~~A~l~dfI~~LP----~g~dt~v~~~ 1179 (1198)
++|||+| .++..|++|||.++... ..+.+ .+.++++..++.++..+.| .|-.-+++++
T Consensus 86 ~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la 154 (271)
T PRK13632 86 GIIFQNPDNQFIGATVEDDIAFGLENKKVPPKKMKDIIDDLAKKVGMEDYLDKEPQNLSGGQKQRVAIA 154 (271)
T ss_pred EEEEeCHHHhcCcccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCCcccCCHHHHHHHHHH
Confidence 9999998 46678999999875211 12333 3667788889988776644 4444444443
|
|
| >cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=99.81 E-value=3.4e-20 Score=199.01 Aligned_cols=133 Identities=27% Similarity=0.471 Sum_probs=108.7
Q ss_pred EEeeeeEECCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHhhcce
Q 000984 1044 ELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMGL 1123 (1198)
Q Consensus 1044 ~f~nVsf~Y~~~~~~~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~~i~l~~LR~~Isi 1123 (1198)
+++||+++|++. .++|+|+||+|++||++||+||+|||||||+++|.|+++|++|+|.+||.++.. ...|++|++
T Consensus 1 ~~~~l~~~~~~~--~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~---~~~~~~i~~ 75 (205)
T cd03226 1 RIENISFSYKKG--TEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKA---KERRKSIGY 75 (205)
T ss_pred CcccEEEEeCCc--CceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhh---HHhhcceEE
Confidence 468999999631 369999999999999999999999999999999999999999999999999864 467789999
Q ss_pred ecccc--ccccccHHHHHhcCCCC-CCCHHHHHHHHHHcchHHHHHh----ccccccceeeeeec
Q 000984 1124 VSQEP--VLFNDTIRANIAYGKGG-DATEAEIQAASEMANAHKFICS----LQQVRTSRLLLVMI 1181 (1198)
Q Consensus 1124 V~Qdp--~LF~gTIreNI~~g~~~-~~tdeei~~Al~~A~l~dfI~~----LP~g~dt~v~~~~~ 1181 (1198)
+||+| .+|..|++||+.++... ...++++.++++..++.++..+ |+.|..-+++++.+
T Consensus 76 ~~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~lara 140 (205)
T cd03226 76 VMQDVDYQLFTDSVREELLLGLKELDAGNEQAETVLKDLDLYALKERHPLSLSGGQKQRLAIAAA 140 (205)
T ss_pred EecChhhhhhhccHHHHHhhhhhhcCccHHHHHHHHHHcCCchhcCCCchhCCHHHHHHHHHHHH
Confidence 99998 47889999999875321 1234578999999999877655 45555555555443
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=6.1e-20 Score=206.03 Aligned_cols=140 Identities=25% Similarity=0.458 Sum_probs=114.6
Q ss_pred cEEEeeeeEECCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHhhc
Q 000984 1042 EIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQM 1121 (1198)
Q Consensus 1042 ~I~f~nVsf~Y~~~~~~~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~~i~l~~LR~~I 1121 (1198)
-|+++||+++|++....++|+|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.+||.++.+.+...+|+++
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~i 83 (277)
T PRK13642 4 ILEVENLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLRRKI 83 (277)
T ss_pred eEEEEEEEEEcCCCCcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEECCcCCHHHHhcce
Confidence 38999999999743234599999999999999999999999999999999999999999999999999988888899999
Q ss_pred ceecccc--ccccccHHHHHhcCCC-CCCCHH----HHHHHHHHcchHHHHHh----ccccccceeeeeec
Q 000984 1122 GLVSQEP--VLFNDTIRANIAYGKG-GDATEA----EIQAASEMANAHKFICS----LQQVRTSRLLLVMI 1181 (1198)
Q Consensus 1122 siV~Qdp--~LF~gTIreNI~~g~~-~~~tde----ei~~Al~~A~l~dfI~~----LP~g~dt~v~~~~~ 1181 (1198)
++|||+| .++..|+.|||.++.. ...+++ ++.++++..++.++..+ |..|-.-++++..+
T Consensus 84 ~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~lAra 154 (277)
T PRK13642 84 GMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKRVDEALLAVNMLDFKTREPARLSGGQKQRVAVAGI 154 (277)
T ss_pred EEEEECHHHhhccCCHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHH
Confidence 9999998 4778999999987521 123333 45778888888887665 44455555555443
|
|
| >PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=4.2e-20 Score=208.12 Aligned_cols=137 Identities=26% Similarity=0.455 Sum_probs=109.3
Q ss_pred EEEeeeeEECCCCC--CccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCC----ChHH
Q 000984 1043 IELHHVSFKYPSRP--DVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKL----QLKW 1116 (1198)
Q Consensus 1043 I~f~nVsf~Y~~~~--~~~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~~i----~l~~ 1116 (1198)
|+++||+++|++.+ ..++|+||||+|++||++||+|++|||||||+++|+|+++|++|+|.+||+++... +...
T Consensus 3 l~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (286)
T PRK13646 3 IRFDNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIRP 82 (286)
T ss_pred EEEEEEEEEECCCCccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHH
Confidence 89999999996422 13699999999999999999999999999999999999999999999999999764 3467
Q ss_pred HHhhcceecccc--ccccccHHHHHhcCCCC-CCC----HHHHHHHHHHcchH-HH----HHhccccccceeeee
Q 000984 1117 LRQQMGLVSQEP--VLFNDTIRANIAYGKGG-DAT----EAEIQAASEMANAH-KF----ICSLQQVRTSRLLLV 1179 (1198)
Q Consensus 1117 LR~~IsiV~Qdp--~LF~gTIreNI~~g~~~-~~t----deei~~Al~~A~l~-df----I~~LP~g~dt~v~~~ 1179 (1198)
+|++|++|||+| .+|..|++|||.++... ..+ ++.+.++++..++. ++ +..|..|-.-+++++
T Consensus 83 ~~~~ig~v~q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~la 157 (286)
T PRK13646 83 VRKRIGMVFQFPESQLFEDTVEREIIFGPKNFKMNLDEVKNYAHRLLMDLGFSRDVMSQSPFQMSGGQMRKIAIV 157 (286)
T ss_pred HHhheEEEecChHhccchhhHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHH
Confidence 899999999998 68999999999986321 123 23456777888885 44 344555555555443
|
|
| >cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE) | Back alignment and domain information |
|---|
Probab=99.81 E-value=3.7e-20 Score=200.91 Aligned_cols=139 Identities=29% Similarity=0.405 Sum_probs=112.6
Q ss_pred EEEeeeeEECCCCC-CccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHH----H
Q 000984 1043 IELHHVSFKYPSRP-DVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKW----L 1117 (1198)
Q Consensus 1043 I~f~nVsf~Y~~~~-~~~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~~i~l~~----L 1117 (1198)
|+++||+++|++.. ..++|+|+||+|++||++||+||+|||||||+++|.|+++|++|+|.+||.++.+++... .
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~ 80 (218)
T cd03255 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAFR 80 (218)
T ss_pred CeEeeeEEEecCCCcceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcchhHHHHHH
Confidence 57899999996421 146999999999999999999999999999999999999999999999999998877433 4
Q ss_pred Hhhcceeccccccccc-cHHHHHhcCCC-CCC----CHHHHHHHHHHcchHHHH----Hhccccccceeeeeec
Q 000984 1118 RQQMGLVSQEPVLFND-TIRANIAYGKG-GDA----TEAEIQAASEMANAHKFI----CSLQQVRTSRLLLVMI 1181 (1198)
Q Consensus 1118 R~~IsiV~Qdp~LF~g-TIreNI~~g~~-~~~----tdeei~~Al~~A~l~dfI----~~LP~g~dt~v~~~~~ 1181 (1198)
|+++++|||++.+|.+ |++||+.++.. ... .++++.++++..++.++. .+|..|..-+++++.+
T Consensus 81 ~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~a 154 (218)
T cd03255 81 RRHIGFVFQSFNLLPDLTALENVELPLLLAGVPKKERRERAEELLERVGLGDRLNHYPSELSGGQQQRVAIARA 154 (218)
T ss_pred hhcEEEEeeccccCCCCcHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhcChhhcCHHHHHHHHHHHH
Confidence 6789999999999986 99999987521 111 235678889988887654 4566777667766554
|
They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. |
| >PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=3.3e-20 Score=209.02 Aligned_cols=137 Identities=26% Similarity=0.491 Sum_probs=108.9
Q ss_pred EEEeeeeEECCCCC--CccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCC----CChHH
Q 000984 1043 IELHHVSFKYPSRP--DVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQK----LQLKW 1116 (1198)
Q Consensus 1043 I~f~nVsf~Y~~~~--~~~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~~----i~l~~ 1116 (1198)
|+|+||+|+|+... ..++|+||||+|++||++||+|++|||||||+++|.|+++|++|+|++||.++.. .+...
T Consensus 2 i~~~~v~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 81 (288)
T PRK13643 2 IKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKP 81 (288)
T ss_pred EEEEEEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECccccccccHHH
Confidence 78999999997321 1259999999999999999999999999999999999999999999999999963 34667
Q ss_pred HHhhcceecccc--ccccccHHHHHhcCCCC-CCCH----HHHHHHHHHcchH-HHHH----hccccccceeeee
Q 000984 1117 LRQQMGLVSQEP--VLFNDTIRANIAYGKGG-DATE----AEIQAASEMANAH-KFIC----SLQQVRTSRLLLV 1179 (1198)
Q Consensus 1117 LR~~IsiV~Qdp--~LF~gTIreNI~~g~~~-~~td----eei~~Al~~A~l~-dfI~----~LP~g~dt~v~~~ 1179 (1198)
+|+++++|+|+| .+|..|+.|||.++... ..+. +++.++++..++. ++.. .|+.|-.-++++.
T Consensus 82 ~~~~ig~v~q~~~~~l~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGqkqrvaiA 156 (288)
T PRK13643 82 VRKKVGVVFQFPESQLFEETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLADEFWEKSPFELSGGQMRRVAIA 156 (288)
T ss_pred HHhhEEEEecCcchhcccchHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCChhhccCCcccCCHHHHHHHHHH
Confidence 899999999998 79999999999987321 1222 3467778888884 4543 3445554444443
|
|
| >PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=4.7e-20 Score=207.66 Aligned_cols=137 Identities=29% Similarity=0.539 Sum_probs=110.5
Q ss_pred EEEeeeeEECCCCC--CccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCC--hHHHH
Q 000984 1043 IELHHVSFKYPSRP--DVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQ--LKWLR 1118 (1198)
Q Consensus 1043 I~f~nVsf~Y~~~~--~~~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~~i~--l~~LR 1118 (1198)
|+++||+++|+... ..++|+||||+|++||++||+|++|||||||+++|.|+++|++|+|.+||.++.+.+ ...+|
T Consensus 3 l~~~~l~~~y~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 82 (287)
T PRK13637 3 IKIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDIR 82 (287)
T ss_pred EEEEEEEEECCCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcCccHHHHh
Confidence 79999999997421 136999999999999999999999999999999999999999999999999998754 45789
Q ss_pred hhcceecccc--ccccccHHHHHhcCCC-CCCCH----HHHHHHHHHcchH--HH----HHhccccccceeeee
Q 000984 1119 QQMGLVSQEP--VLFNDTIRANIAYGKG-GDATE----AEIQAASEMANAH--KF----ICSLQQVRTSRLLLV 1179 (1198)
Q Consensus 1119 ~~IsiV~Qdp--~LF~gTIreNI~~g~~-~~~td----eei~~Al~~A~l~--df----I~~LP~g~dt~v~~~ 1179 (1198)
++|++|||+| .+|+.|++|||.++.. ...+. +.+.++++..++. ++ +..|..|-..+++++
T Consensus 83 ~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~LSgGq~qrv~iA 156 (287)
T PRK13637 83 KKVGLVFQYPEYQLFEETIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLDYEDYKDKSPFELSGGQKRRVAIA 156 (287)
T ss_pred hceEEEecCchhccccccHHHHHHhHHHHCCCCHHHHHHHHHHHHHHcCCCchhhccCCcccCCHHHHHHHHHH
Confidence 9999999998 5889999999987631 12333 3467888888885 43 344555555555544
|
|
| >cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane | Back alignment and domain information |
|---|
Probab=99.81 E-value=4.8e-20 Score=199.48 Aligned_cols=136 Identities=28% Similarity=0.442 Sum_probs=109.8
Q ss_pred EEEeeeeEECCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCCh---HHHHh
Q 000984 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQL---KWLRQ 1119 (1198)
Q Consensus 1043 I~f~nVsf~Y~~~~~~~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~~i~l---~~LR~ 1119 (1198)
|+++||+++|+++ .++|+|+||+|++||++||+|++|||||||+++|.|+++|++|+|.+||.++.+.+. ..+|+
T Consensus 1 l~~~~l~~~~~~~--~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~ 78 (214)
T cd03292 1 IEFINVTKTYPNG--TAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYLRR 78 (214)
T ss_pred CEEEEEEEEeCCC--ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHHH
Confidence 5789999999632 359999999999999999999999999999999999999999999999999987764 35788
Q ss_pred hcceecccccccc-ccHHHHHhcCCC-CCC----CHHHHHHHHHHcchHHHHHh----ccccccceeeeee
Q 000984 1120 QMGLVSQEPVLFN-DTIRANIAYGKG-GDA----TEAEIQAASEMANAHKFICS----LQQVRTSRLLLVM 1180 (1198)
Q Consensus 1120 ~IsiV~Qdp~LF~-gTIreNI~~g~~-~~~----tdeei~~Al~~A~l~dfI~~----LP~g~dt~v~~~~ 1180 (1198)
++++|||++.+|. .|++||+.++.. ... .++++.++++..++.+...+ |..|-.-++++..
T Consensus 79 ~i~~v~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~lar 149 (214)
T cd03292 79 KIGVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRKRVPAALELVGLSHKHRALPAELSGGEQQRVAIAR 149 (214)
T ss_pred heEEEecCchhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHH
Confidence 9999999999998 499999987521 011 23467888888888776654 4445544454443
|
The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. |
| >cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Probab=99.81 E-value=5.1e-20 Score=198.66 Aligned_cols=134 Identities=23% Similarity=0.405 Sum_probs=110.4
Q ss_pred EEEeeeeEECCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHhhcc
Q 000984 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMG 1122 (1198)
Q Consensus 1043 I~f~nVsf~Y~~~~~~~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~~i~l~~LR~~Is 1122 (1198)
|+++||+|+|++ .++|+|+||+|++| .+||+||+|||||||+++|.|+++|++|+|.+||.++.+.+ ..+|++++
T Consensus 1 i~~~~~~~~~~~---~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~-~~~~~~i~ 75 (211)
T cd03264 1 LQLENLTKRYGK---KRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQP-QKLRRRIG 75 (211)
T ss_pred CEEEEEEEEECC---EEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCCccccch-HHHHhheE
Confidence 579999999963 35999999999999 99999999999999999999999999999999999998877 78899999
Q ss_pred eeccccccccc-cHHHHHhcCCC-CCC----CHHHHHHHHHHcchHHHH----Hhccccccceeeeeec
Q 000984 1123 LVSQEPVLFND-TIRANIAYGKG-GDA----TEAEIQAASEMANAHKFI----CSLQQVRTSRLLLVMI 1181 (1198)
Q Consensus 1123 iV~Qdp~LF~g-TIreNI~~g~~-~~~----tdeei~~Al~~A~l~dfI----~~LP~g~dt~v~~~~~ 1181 (1198)
+|||+|.+|.+ |++||+.+... ... .++++.++++..++.++. .+|+.|-..+++++.+
T Consensus 76 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~a 144 (211)
T cd03264 76 YLPQEFGVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVLELVNLGDRAKKKIGSLSGGMRRRVGIAQA 144 (211)
T ss_pred EecCCCcccccCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCHHHHhCchhhCCHHHHHHHHHHHH
Confidence 99999999986 99999986310 011 135678889998887654 4456666666655443
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds | Back alignment and domain information |
|---|
Probab=99.81 E-value=5.6e-20 Score=199.78 Aligned_cols=137 Identities=21% Similarity=0.349 Sum_probs=111.0
Q ss_pred EEEeeeeEECCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHhhcc
Q 000984 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMG 1122 (1198)
Q Consensus 1043 I~f~nVsf~Y~~~~~~~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~~i~l~~LR~~Is 1122 (1198)
|+++||+++|++. ..++|+|+||+|++||.+||+||+|||||||+++|.|+++|++|+|.+||.++.... ..+|++++
T Consensus 1 l~~~~l~~~~~~~-~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~-~~~~~~i~ 78 (220)
T cd03263 1 LQIRNLTKTYKKG-TKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTDR-KAARQSLG 78 (220)
T ss_pred CEEEeeEEEeCCC-CceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccch-HHHhhhEE
Confidence 5799999999642 146999999999999999999999999999999999999999999999999997653 67788999
Q ss_pred eeccccccc-cccHHHHHhcCCC-CCC----CHHHHHHHHHHcchHHHH----Hhccccccceeeeeec
Q 000984 1123 LVSQEPVLF-NDTIRANIAYGKG-GDA----TEAEIQAASEMANAHKFI----CSLQQVRTSRLLLVMI 1181 (1198)
Q Consensus 1123 iV~Qdp~LF-~gTIreNI~~g~~-~~~----tdeei~~Al~~A~l~dfI----~~LP~g~dt~v~~~~~ 1181 (1198)
+|+|++.+| +.|+++|+.++.. ... .++++.++++..++.+.. ..|+.|-..++++..+
T Consensus 79 ~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~a 147 (220)
T cd03263 79 YCPQFDALFDELTVREHLRFYARLKGLPKSEIKEEVELLLRVLGLTDKANKRARTLSGGMKRKLSLAIA 147 (220)
T ss_pred EecCcCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhChhhhCCHHHHHHHHHHHH
Confidence 999999999 6799999986411 011 134577888888886654 4466676666666544
|
Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. |
| >PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=6.7e-20 Score=204.55 Aligned_cols=136 Identities=27% Similarity=0.444 Sum_probs=114.0
Q ss_pred cEEEeeeeEECCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHhhc
Q 000984 1042 EIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQM 1121 (1198)
Q Consensus 1042 ~I~f~nVsf~Y~~~~~~~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~~i~l~~LR~~I 1121 (1198)
.|+++||+++|++ .++|+|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.+||.|+.+.+...+|+.+
T Consensus 11 ~l~i~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i 87 (265)
T PRK10575 11 TFALRNVSFRVPG---RTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFARKV 87 (265)
T ss_pred eEEEeeEEEEECC---EEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEehhhCCHHHHhhhe
Confidence 4899999999963 3599999999999999999999999999999999999999999999999999988888999999
Q ss_pred ceeccccccccc-cHHHHHhcCCC---------CCCCHHHHHHHHHHcchHHHHHh----ccccccceeeeee
Q 000984 1122 GLVSQEPVLFND-TIRANIAYGKG---------GDATEAEIQAASEMANAHKFICS----LQQVRTSRLLLVM 1180 (1198)
Q Consensus 1122 siV~Qdp~LF~g-TIreNI~~g~~---------~~~tdeei~~Al~~A~l~dfI~~----LP~g~dt~v~~~~ 1180 (1198)
++|||++.+|.+ |++||+.++.. +...++++.++++..++.+++.. |..|-.-+++++.
T Consensus 88 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~lar 160 (265)
T PRK10575 88 AYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLVDSLSGGERQRAWIAM 160 (265)
T ss_pred EEeccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCCHHHHHHHHHHH
Confidence 999999877655 99999997521 01234568889999999887665 4455555555443
|
|
| >cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance | Back alignment and domain information |
|---|
Probab=99.81 E-value=6.6e-20 Score=197.33 Aligned_cols=134 Identities=21% Similarity=0.358 Sum_probs=112.9
Q ss_pred EEEeeeeEECCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHhhcc
Q 000984 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMG 1122 (1198)
Q Consensus 1043 I~f~nVsf~Y~~~~~~~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~~i~l~~LR~~Is 1122 (1198)
|+++||+++|++ .++|+|+||+|++||.++|+|++|||||||+++|.|+.+|++|+|.+||.++.+. ..+|++++
T Consensus 1 l~~~~l~~~~~~---~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~--~~~~~~i~ 75 (208)
T cd03268 1 LKTNDLTKTYGK---KRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKN--IEALRRIG 75 (208)
T ss_pred CEEEEEEEEECC---eEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCcccch--HHHHhhEE
Confidence 578999999963 3699999999999999999999999999999999999999999999999998765 56788999
Q ss_pred eeccccccc-cccHHHHHhcCCC-CCCCHHHHHHHHHHcchHHHH----Hhccccccceeeeeec
Q 000984 1123 LVSQEPVLF-NDTIRANIAYGKG-GDATEAEIQAASEMANAHKFI----CSLQQVRTSRLLLVMI 1181 (1198)
Q Consensus 1123 iV~Qdp~LF-~gTIreNI~~g~~-~~~tdeei~~Al~~A~l~dfI----~~LP~g~dt~v~~~~~ 1181 (1198)
+|||++.+| +.|++|||.++.. ...+++++.++++..++.+.. ..|+.|-..+++++.+
T Consensus 76 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~a 140 (208)
T cd03268 76 ALIEAPGFYPNLTARENLRLLARLLGIRKKRIDEVLDVVGLKDSAKKKVKGFSLGMKQRLGIALA 140 (208)
T ss_pred EecCCCccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHHhhhHhhCCHHHHHHHHHHHH
Confidence 999999887 5799999986421 123567888999999886654 4577777777766554
|
Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. |
| >PRK10908 cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=7.6e-20 Score=198.90 Aligned_cols=136 Identities=28% Similarity=0.403 Sum_probs=109.4
Q ss_pred EEEeeeeEECCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHH---HHh
Q 000984 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKW---LRQ 1119 (1198)
Q Consensus 1043 I~f~nVsf~Y~~~~~~~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~~i~l~~---LR~ 1119 (1198)
|+++||+++|+. +.++|+|+||+|++||++||+|++|||||||+++|.|+++|++|+|.+||.++.+++... +|+
T Consensus 2 l~~~~l~~~~~~--~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~ 79 (222)
T PRK10908 2 IRFEHVSKAYLG--GRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFLRR 79 (222)
T ss_pred EEEEeeEEEecC--CCeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCChhHHHHHHh
Confidence 789999999952 236999999999999999999999999999999999999999999999999998876544 788
Q ss_pred hcceecccccc-ccccHHHHHhcCCC-CCCCH----HHHHHHHHHcchHHHHHh----ccccccceeeeee
Q 000984 1120 QMGLVSQEPVL-FNDTIRANIAYGKG-GDATE----AEIQAASEMANAHKFICS----LQQVRTSRLLLVM 1180 (1198)
Q Consensus 1120 ~IsiV~Qdp~L-F~gTIreNI~~g~~-~~~td----eei~~Al~~A~l~dfI~~----LP~g~dt~v~~~~ 1180 (1198)
++++|||+|.+ +..|++|||.++.. ...++ +++.++++..++.+...+ |+.|-..+++++.
T Consensus 80 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~lar 150 (222)
T PRK10908 80 QIGMIFQDHHLLMDRTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDKAKNFPIQLSGGEQQRVGIAR 150 (222)
T ss_pred heEEEecCccccccccHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCCchhCCHHHHHHHHHHH
Confidence 99999999987 57799999987521 11222 346678888888776544 5555555555443
|
|
| >cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport | Back alignment and domain information |
|---|
Probab=99.81 E-value=8e-20 Score=200.37 Aligned_cols=139 Identities=24% Similarity=0.379 Sum_probs=112.5
Q ss_pred EEEeeeeEECCCCC-CccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChH---HHH
Q 000984 1043 IELHHVSFKYPSRP-DVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLK---WLR 1118 (1198)
Q Consensus 1043 I~f~nVsf~Y~~~~-~~~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~~i~l~---~LR 1118 (1198)
|+++||+++|+++. ..++|+|+||+|++||.+||+||+|||||||+++|.|+++|++|+|.+||.++...+.. .+|
T Consensus 2 i~~~~l~~~~~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (233)
T cd03258 2 IELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELRKAR 81 (233)
T ss_pred eEEecceEEccCCCCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHH
Confidence 78999999996421 12699999999999999999999999999999999999999999999999999887654 358
Q ss_pred hhcceecccccccc-ccHHHHHhcCCC-CCC----CHHHHHHHHHHcchHHHHHh----ccccccceeeeeec
Q 000984 1119 QQMGLVSQEPVLFN-DTIRANIAYGKG-GDA----TEAEIQAASEMANAHKFICS----LQQVRTSRLLLVMI 1181 (1198)
Q Consensus 1119 ~~IsiV~Qdp~LF~-gTIreNI~~g~~-~~~----tdeei~~Al~~A~l~dfI~~----LP~g~dt~v~~~~~ 1181 (1198)
+++++|||++.+|. .|++|||.++.. ... .++++.++++..++.+...+ |..|-.-+++++.+
T Consensus 82 ~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~a 154 (233)
T cd03258 82 RRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIEERVLELLELVGLEDKADAYPAQLSGGQKQRVGIARA 154 (233)
T ss_pred hheEEEccCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhhcChhhCCHHHHHHHHHHHH
Confidence 89999999999997 699999986421 011 24567889999999877654 55565556655543
|
Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=99.81 E-value=6.6e-20 Score=197.88 Aligned_cols=137 Identities=33% Similarity=0.570 Sum_probs=111.5
Q ss_pred EEeeeeEECCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHhhcce
Q 000984 1044 ELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMGL 1123 (1198)
Q Consensus 1044 ~f~nVsf~Y~~~~~~~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~~i~l~~LR~~Isi 1123 (1198)
+++||+++|+++ +.++|+|+||+|++||.+||+||+|||||||+++|.|+++|++|+|.+||.++.+.+...+|++|++
T Consensus 1 ~~~~l~~~~~~~-~~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 79 (211)
T cd03225 1 ELKNLSFSYPDG-ARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRRKVGL 79 (211)
T ss_pred CceeEEEecCCC-CeeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccCCHHHHHhhceE
Confidence 478999999642 2469999999999999999999999999999999999999999999999999998888889999999
Q ss_pred ecccc--ccccccHHHHHhcCCC-CCCC----HHHHHHHHHHcchHHHHHh----ccccccceeeeeec
Q 000984 1124 VSQEP--VLFNDTIRANIAYGKG-GDAT----EAEIQAASEMANAHKFICS----LQQVRTSRLLLVMI 1181 (1198)
Q Consensus 1124 V~Qdp--~LF~gTIreNI~~g~~-~~~t----deei~~Al~~A~l~dfI~~----LP~g~dt~v~~~~~ 1181 (1198)
+||++ .+|..|++||+.++.. ...+ ++++.++++..++.+++.+ |..|-.-+++++.+
T Consensus 80 ~~q~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~lara 148 (211)
T cd03225 80 VFQNPDDQFFGPTVEEEVAFGLENLGLPEEEIEERVEEALELVGLEGLRDRSPFTLSGGQKQRVAIAGV 148 (211)
T ss_pred EecChhhhcCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHH
Confidence 99998 4678999999987421 0112 3456778888888776654 55565555555443
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.4e-19 Score=189.90 Aligned_cols=137 Identities=31% Similarity=0.442 Sum_probs=109.0
Q ss_pred EEEeeeeEECCCCC-CccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCCh---HHHH
Q 000984 1043 IELHHVSFKYPSRP-DVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQL---KWLR 1118 (1198)
Q Consensus 1043 I~f~nVsf~Y~~~~-~~~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~~i~l---~~LR 1118 (1198)
|+++||+..|.... ..++|+|+||+|++||.|||+||||||||||+++|-++-.|++|.|.|+|.|+..++- ..+|
T Consensus 2 i~~~~v~k~y~~~~~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~~R 81 (226)
T COG1136 2 IELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKLR 81 (226)
T ss_pred cEEeeeEEEeccCCcceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHHHH
Confidence 67999999996432 1369999999999999999999999999999999999999999999999999999984 4444
Q ss_pred -hhcceecccccccc-ccHHHHHhc----CCCCC-CCHHHHHHHHHHcchHHHHH-----hccccccceeeee
Q 000984 1119 -QQMGLVSQEPVLFN-DTIRANIAY----GKGGD-ATEAEIQAASEMANAHKFIC-----SLQQVRTSRLLLV 1179 (1198)
Q Consensus 1119 -~~IsiV~Qdp~LF~-gTIreNI~~----g~~~~-~tdeei~~Al~~A~l~dfI~-----~LP~g~dt~v~~~ 1179 (1198)
++||+|+|+..|+. -|++|||.+ ..... ...+.+.+.++..++.+... .|..|-.-+||+.
T Consensus 82 ~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p~eLSGGqqQRVAIA 154 (226)
T COG1136 82 RKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLLKKKPSELSGGQQQRVAIA 154 (226)
T ss_pred HHhEEEECccCCCCCCCCHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhhccCCchhcCHHHHHHHHHH
Confidence 57999999999875 599999983 21111 12455677788888885555 5556666666543
|
|
| >PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.3e-19 Score=203.69 Aligned_cols=129 Identities=28% Similarity=0.489 Sum_probs=109.9
Q ss_pred ccEEEeeeeEECCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCC---CeEEECCcccCCCChHHH
Q 000984 1041 GEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDA---GHITLDGVEIQKLQLKWL 1117 (1198)
Q Consensus 1041 G~I~f~nVsf~Y~~~~~~~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~---G~I~IDG~dI~~i~l~~L 1117 (1198)
+.|+++|++|+|++. ..++|+|+||+|++||.+||+|++|||||||+++|+|+++|++ |+|.+||.++...+...+
T Consensus 4 ~~l~i~~l~~~~~~~-~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~~ 82 (282)
T PRK13640 4 NIVEFKHVSFTYPDS-KKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWDI 82 (282)
T ss_pred ceEEEEEEEEEcCCC-CccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHHHH
Confidence 359999999999642 2359999999999999999999999999999999999999987 899999999988888888
Q ss_pred Hhhcceecccc--ccccccHHHHHhcCCC-CCCCH----HHHHHHHHHcchHHHHHhccc
Q 000984 1118 RQQMGLVSQEP--VLFNDTIRANIAYGKG-GDATE----AEIQAASEMANAHKFICSLQQ 1170 (1198)
Q Consensus 1118 R~~IsiV~Qdp--~LF~gTIreNI~~g~~-~~~td----eei~~Al~~A~l~dfI~~LP~ 1170 (1198)
|++|++|||+| .+|+.|++|||.++.. ...+. +++.++++..++.++..+.|.
T Consensus 83 ~~~ig~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~ 142 (282)
T PRK13640 83 REKVGIVFQNPDNQFVGATVGDDVAFGLENRAVPRPEMIKIVRDVLADVGMLDYIDSEPA 142 (282)
T ss_pred HhheEEEEECHHHhhccCCHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCChhHhcCCcc
Confidence 99999999998 4678999999987621 12333 347888999999888776553
|
|
| >PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=9.3e-20 Score=204.52 Aligned_cols=126 Identities=23% Similarity=0.439 Sum_probs=107.9
Q ss_pred EEEeeeeEECCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHhhcc
Q 000984 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMG 1122 (1198)
Q Consensus 1043 I~f~nVsf~Y~~~~~~~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~~i~l~~LR~~Is 1122 (1198)
++++||+++|+++ .++|+|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.+||.++...+...++++++
T Consensus 4 l~~~~l~~~~~~~--~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 81 (277)
T PRK13652 4 IETRDLCYSYSGS--KEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREVRKFVG 81 (277)
T ss_pred EEEEEEEEEeCCC--CceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhheE
Confidence 7899999999632 35999999999999999999999999999999999999999999999999998888888999999
Q ss_pred eecccc--ccccccHHHHHhcCCC-CCCC----HHHHHHHHHHcchHHHHHhccc
Q 000984 1123 LVSQEP--VLFNDTIRANIAYGKG-GDAT----EAEIQAASEMANAHKFICSLQQ 1170 (1198)
Q Consensus 1123 iV~Qdp--~LF~gTIreNI~~g~~-~~~t----deei~~Al~~A~l~dfI~~LP~ 1170 (1198)
+|||+| .+|+.|+++||.++.. ...+ ++.+.++++..++.++..+.|.
T Consensus 82 ~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 136 (277)
T PRK13652 82 LVFQNPDDQIFSPTVEQDIAFGPINLGLDEETVAHRVSSALHMLGLEELRDRVPH 136 (277)
T ss_pred EEecCcccccccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCCcc
Confidence 999998 4888999999987521 0122 3457888999999887665443
|
|
| >PRK13540 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.1e-19 Score=193.93 Aligned_cols=134 Identities=20% Similarity=0.367 Sum_probs=109.8
Q ss_pred EEEeeeeEECCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHhhcc
Q 000984 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMG 1122 (1198)
Q Consensus 1043 I~f~nVsf~Y~~~~~~~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~~i~l~~LR~~Is 1122 (1198)
|+++||+++|++ .++|+|+||+|++||++||+|++|||||||+++|.|+++|++|+|++||.++.. ....+|++++
T Consensus 2 l~~~~l~~~~~~---~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~-~~~~~~~~i~ 77 (200)
T PRK13540 2 LDVIELDFDYHD---QPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKK-DLCTYQKQLC 77 (200)
T ss_pred EEEEEEEEEeCC---eeEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeeEEECCCcccc-CHHHHHhheE
Confidence 689999999963 359999999999999999999999999999999999999999999999999975 3467889999
Q ss_pred eeccccccc-cccHHHHHhcCCCCCCCHHHHHHHHHHcchHHHH----Hhccccccceeeeee
Q 000984 1123 LVSQEPVLF-NDTIRANIAYGKGGDATEAEIQAASEMANAHKFI----CSLQQVRTSRLLLVM 1180 (1198)
Q Consensus 1123 iV~Qdp~LF-~gTIreNI~~g~~~~~tdeei~~Al~~A~l~dfI----~~LP~g~dt~v~~~~ 1180 (1198)
++||++.+| ..|+++|+.++......++.+.++++..++.+.. ..|+.|-..+++++.
T Consensus 78 ~~~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~lar 140 (200)
T PRK13540 78 FVGHRSGINPYLTLRENCLYDIHFSPGAVGITELCRLFSLEHLIDYPCGLLSSGQKRQVALLR 140 (200)
T ss_pred EeccccccCcCCCHHHHHHHHHhcCcchHHHHHHHHHcCCchhhhCChhhcCHHHHHHHHHHH
Confidence 999999986 5799999997632122345677888877775544 346666666655544
|
|
| >cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system | Back alignment and domain information |
|---|
Probab=99.80 E-value=1e-19 Score=200.79 Aligned_cols=137 Identities=30% Similarity=0.482 Sum_probs=112.7
Q ss_pred EEEeeeeEECCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCC---hHHHHh
Q 000984 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQ---LKWLRQ 1119 (1198)
Q Consensus 1043 I~f~nVsf~Y~~~~~~~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~~i~---l~~LR~ 1119 (1198)
|+++||+++|++ +.++|+|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.+||.++...+ ...+|+
T Consensus 1 l~~~~l~~~~~~--~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 78 (241)
T cd03256 1 IEVENLSKTYPN--GKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQLRR 78 (241)
T ss_pred CEEeeEEEecCC--ccEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEeccccCHhHHHHHHh
Confidence 478999999963 146999999999999999999999999999999999999999999999999998877 567889
Q ss_pred hcceecccccccc-ccHHHHHhcCCC-------------CCCCHHHHHHHHHHcchHHHHH----hccccccceeeeeec
Q 000984 1120 QMGLVSQEPVLFN-DTIRANIAYGKG-------------GDATEAEIQAASEMANAHKFIC----SLQQVRTSRLLLVMI 1181 (1198)
Q Consensus 1120 ~IsiV~Qdp~LF~-gTIreNI~~g~~-------------~~~tdeei~~Al~~A~l~dfI~----~LP~g~dt~v~~~~~ 1181 (1198)
++++|||++.+|. .|+++|+.++.. ....++++.++++..++.+... .|..|-.-+++++.+
T Consensus 79 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~a 158 (241)
T cd03256 79 QIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQRADQLSGGQQQRVAIARA 158 (241)
T ss_pred ccEEEcccCcccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhhCCCcccCCHHHHHHHHHHHH
Confidence 9999999999887 699999986421 0122456778889988877654 466666666665543
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.5e-19 Score=196.82 Aligned_cols=137 Identities=24% Similarity=0.424 Sum_probs=113.7
Q ss_pred cEEEeeeeEECCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHhhc
Q 000984 1042 EIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQM 1121 (1198)
Q Consensus 1042 ~I~f~nVsf~Y~~~~~~~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~~i~l~~LR~~I 1121 (1198)
-|+++||+++|++ .++|+|+||+|++||.+||+||+|||||||+++|.|+++|++|+|.+||.++.+++...+|+++
T Consensus 7 ~i~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 83 (225)
T PRK10247 7 LLQLQNVGYLAGD---AKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYRQQV 83 (225)
T ss_pred eEEEeccEEeeCC---ceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEcCcCCHHHHHhcc
Confidence 4899999999963 3599999999999999999999999999999999999999999999999999998888899999
Q ss_pred ceeccccccccccHHHHHhcCC---CCCCCHHHHHHHHHHcchHH-H----HHhccccccceeeeeec
Q 000984 1122 GLVSQEPVLFNDTIRANIAYGK---GGDATEAEIQAASEMANAHK-F----ICSLQQVRTSRLLLVMI 1181 (1198)
Q Consensus 1122 siV~Qdp~LF~gTIreNI~~g~---~~~~tdeei~~Al~~A~l~d-f----I~~LP~g~dt~v~~~~~ 1181 (1198)
++|||++.+|+.|++||+.++. .....++++.++++..++.+ . +..|+.|..-+++++.+
T Consensus 84 ~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~lara 151 (225)
T PRK10247 84 SYCAQTPTLFGDTVYDNLIFPWQIRNQQPDPAIFLDDLERFALPDTILTKNIAELSGGEKQRISLIRN 151 (225)
T ss_pred EEEecccccccccHHHHHHhHHhhcCCChHHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHH
Confidence 9999999999999999998631 11123455778888888743 3 34566666666655443
|
|
| >TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.2e-19 Score=200.49 Aligned_cols=138 Identities=29% Similarity=0.482 Sum_probs=112.3
Q ss_pred EEEeeeeEECCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCCh---HHHHh
Q 000984 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQL---KWLRQ 1119 (1198)
Q Consensus 1043 I~f~nVsf~Y~~~~~~~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~~i~l---~~LR~ 1119 (1198)
|+++||+++|+. +.++|+|+||+|++||.+||+||+|||||||+++|.|+++|++|+|.+||.++.+++. ..+|+
T Consensus 2 l~~~~l~~~~~~--~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 79 (243)
T TIGR02315 2 LEVENLSKVYPN--GKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKLRR 79 (243)
T ss_pred eEEEeeeeecCC--CcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhhhCCHHHHHHHHh
Confidence 689999999962 2359999999999999999999999999999999999999999999999999987754 45789
Q ss_pred hcceecccccccc-ccHHHHHhcCCCC-------------CCCHHHHHHHHHHcchHHHHHh----ccccccceeeeeec
Q 000984 1120 QMGLVSQEPVLFN-DTIRANIAYGKGG-------------DATEAEIQAASEMANAHKFICS----LQQVRTSRLLLVMI 1181 (1198)
Q Consensus 1120 ~IsiV~Qdp~LF~-gTIreNI~~g~~~-------------~~tdeei~~Al~~A~l~dfI~~----LP~g~dt~v~~~~~ 1181 (1198)
++++|||++.+|. .|++||+.++... ...++++.++++..++.++... |..|...+++++.+
T Consensus 80 ~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~a 159 (243)
T TIGR02315 80 RIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAYQRADQLSGGQQQRVAIARA 159 (243)
T ss_pred heEEEcCCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHH
Confidence 9999999999886 6999999875211 1123467788888888776544 56666666666544
Q ss_pred c
Q 000984 1182 P 1182 (1198)
Q Consensus 1182 ~ 1182 (1198)
-
T Consensus 160 l 160 (243)
T TIGR02315 160 L 160 (243)
T ss_pred H
Confidence 3
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates. |
| >cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup | Back alignment and domain information |
|---|
Probab=99.80 E-value=6.1e-20 Score=198.34 Aligned_cols=134 Identities=31% Similarity=0.489 Sum_probs=109.3
Q ss_pred EEEeeeeEECCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHhhcc
Q 000984 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMG 1122 (1198)
Q Consensus 1043 I~f~nVsf~Y~~~~~~~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~~i~l~~LR~~Is 1122 (1198)
|+++||+++|++ .++|+|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.+||.++.+.+ ..|++++
T Consensus 1 l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~--~~~~~i~ 75 (213)
T cd03259 1 LELKGLSKTYGS---VRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVP--PERRNIG 75 (213)
T ss_pred CeeeeeEEEeCC---eeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCcCc--hhhccEE
Confidence 578999999963 36999999999999999999999999999999999999999999999999998754 3578899
Q ss_pred eecccccccc-ccHHHHHhcCCCC-----CCCHHHHHHHHHHcchHHHHHh----ccccccceeeeeec
Q 000984 1123 LVSQEPVLFN-DTIRANIAYGKGG-----DATEAEIQAASEMANAHKFICS----LQQVRTSRLLLVMI 1181 (1198)
Q Consensus 1123 iV~Qdp~LF~-gTIreNI~~g~~~-----~~tdeei~~Al~~A~l~dfI~~----LP~g~dt~v~~~~~ 1181 (1198)
+|||++.+|. .|++||+.++... ...++++.++++..++.++..+ |..|-.-+++++.+
T Consensus 76 ~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~a 144 (213)
T cd03259 76 MVFQDYALFPHLTVAENIAFGLKLRGVPKAEIRARVRELLELVGLEGLLNRYPHELSGGQQQRVALARA 144 (213)
T ss_pred EEcCchhhccCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHH
Confidence 9999999886 6999999875210 1123457888999988776554 56666666655443
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.3e-19 Score=197.94 Aligned_cols=139 Identities=25% Similarity=0.387 Sum_probs=111.2
Q ss_pred cEEEeeeeEECCCCCC-ccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHH---H
Q 000984 1042 EIELHHVSFKYPSRPD-VQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKW---L 1117 (1198)
Q Consensus 1042 ~I~f~nVsf~Y~~~~~-~~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~~i~l~~---L 1117 (1198)
-|+++||+++|+++.. .++|+|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.+||.++.+++... +
T Consensus 6 ~l~~~~l~~~~~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 85 (228)
T PRK10584 6 IVEVHHLKKSVGQGEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAKL 85 (228)
T ss_pred eEEEeeeEEEccCCCcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEcccCCHHHHHHH
Confidence 4899999999974211 25999999999999999999999999999999999999999999999999998887654 3
Q ss_pred -Hhhcceeccccccccc-cHHHHHhcCC--CC---CCCHHHHHHHHHHcchHHHHHh----ccccccceeeeee
Q 000984 1118 -RQQMGLVSQEPVLFND-TIRANIAYGK--GG---DATEAEIQAASEMANAHKFICS----LQQVRTSRLLLVM 1180 (1198)
Q Consensus 1118 -R~~IsiV~Qdp~LF~g-TIreNI~~g~--~~---~~tdeei~~Al~~A~l~dfI~~----LP~g~dt~v~~~~ 1180 (1198)
++++++|||++.+|.+ |++||+.++. .. ....+++.++++..++.++..+ |+.|-..++++..
T Consensus 86 ~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrl~la~ 159 (228)
T PRK10584 86 RAKHVGFVFQSFMLIPTLNALENVELPALLRGESSRQSRNGAKALLEQLGLGKRLDHLPAQLSGGEQQRVALAR 159 (228)
T ss_pred HhheEEEEEcccccCCCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHH
Confidence 3689999999999885 9999998631 00 1124567888999999887655 4455555554443
|
|
| >cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.6e-19 Score=192.88 Aligned_cols=133 Identities=19% Similarity=0.351 Sum_probs=111.6
Q ss_pred EEEeeeeEECCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHhhcc
Q 000984 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMG 1122 (1198)
Q Consensus 1043 I~f~nVsf~Y~~~~~~~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~~i~l~~LR~~Is 1122 (1198)
|+++||+++|++ .++|+|+||+|++||++||+|++|||||||+++|.|+++|++|+|.+||.++.... ..+|++++
T Consensus 1 l~i~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~-~~~~~~i~ 76 (201)
T cd03231 1 LEADELTCERDG---RALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQR-DSIARGLL 76 (201)
T ss_pred CEEEEEEEEeCC---ceeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccc-HHhhhheE
Confidence 478999999963 35999999999999999999999999999999999999999999999999987654 57889999
Q ss_pred eeccccccc-cccHHHHHhcCCCCCCCHHHHHHHHHHcchHHHH----Hhccccccceeeeee
Q 000984 1123 LVSQEPVLF-NDTIRANIAYGKGGDATEAEIQAASEMANAHKFI----CSLQQVRTSRLLLVM 1180 (1198)
Q Consensus 1123 iV~Qdp~LF-~gTIreNI~~g~~~~~tdeei~~Al~~A~l~dfI----~~LP~g~dt~v~~~~ 1180 (1198)
++||++.++ +.|++||+.+... ..+++++.++++..++.++. ..|+.|..-+++++.
T Consensus 77 ~~~q~~~~~~~~tv~e~l~~~~~-~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~lar 138 (201)
T cd03231 77 YLGHAPGIKTTLSVLENLRFWHA-DHSDEQVEEALARVGLNGFEDRPVAQLSAGQQRRVALAR 138 (201)
T ss_pred EeccccccCCCcCHHHHHHhhcc-cccHHHHHHHHHHcCChhhhcCchhhCCHHHHHHHHHHH
Confidence 999999876 6899999987632 35677889999999987654 445666555555443
|
The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. |
| >PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=6.2e-20 Score=210.78 Aligned_cols=132 Identities=27% Similarity=0.448 Sum_probs=109.8
Q ss_pred cEEEeeeeEECCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHhhc
Q 000984 1042 EIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQM 1121 (1198)
Q Consensus 1042 ~I~f~nVsf~Y~~~~~~~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~~i~l~~LR~~I 1121 (1198)
.|+++||+++|++ .++|+|+||+|++||.+||+||||||||||+++|.|+++|++|+|.+||.++.+.+. .|++|
T Consensus 6 ~l~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~--~~r~i 80 (351)
T PRK11432 6 FVVLKNITKRFGS---NTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSI--QQRDI 80 (351)
T ss_pred EEEEEeEEEEECC---eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCH--HHCCE
Confidence 5999999999963 359999999999999999999999999999999999999999999999999988765 46899
Q ss_pred ceecccccccc-ccHHHHHhcCCC-CCCC----HHHHHHHHHHcchHHHHHhccc----cccceeee
Q 000984 1122 GLVSQEPVLFN-DTIRANIAYGKG-GDAT----EAEIQAASEMANAHKFICSLQQ----VRTSRLLL 1178 (1198)
Q Consensus 1122 siV~Qdp~LF~-gTIreNI~~g~~-~~~t----deei~~Al~~A~l~dfI~~LP~----g~dt~v~~ 1178 (1198)
++|+|++.||. .|++|||.|+.. ...+ ++++.++++..++.++..+.|. |-.-+|++
T Consensus 81 g~vfQ~~~lfp~~tv~eNi~~~l~~~~~~~~~~~~~v~~~l~~~gl~~~~~r~~~~LSgGq~QRVaL 147 (351)
T PRK11432 81 CMVFQSYALFPHMSLGENVGYGLKMLGVPKEERKQRVKEALELVDLAGFEDRYVDQISGGQQQRVAL 147 (351)
T ss_pred EEEeCCcccCCCCCHHHHHHHHHhHcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHH
Confidence 99999999996 599999998631 0112 4567889999999877665553 44444444
|
|
| >TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.2e-19 Score=197.38 Aligned_cols=139 Identities=26% Similarity=0.374 Sum_probs=110.2
Q ss_pred EEEeeeeEECCCCC-CccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHH---H
Q 000984 1043 IELHHVSFKYPSRP-DVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWL---R 1118 (1198)
Q Consensus 1043 I~f~nVsf~Y~~~~-~~~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~~i~l~~L---R 1118 (1198)
|+++||+++|++.. ..++|+|+||+|++||.+||+||+|||||||+++|.|+++|++|+|.+||.|+.+++...+ |
T Consensus 2 l~~~~v~~~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (221)
T TIGR02211 2 LKCENLGKRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAKLR 81 (221)
T ss_pred EEEEeeeEEccCCCcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcCHhHHHHHH
Confidence 78999999996421 1369999999999999999999999999999999999999999999999999988876543 4
Q ss_pred -hhcceecccccccc-ccHHHHHhcCCC-CCC----CHHHHHHHHHHcchHHHHHh----ccccccceeeeeec
Q 000984 1119 -QQMGLVSQEPVLFN-DTIRANIAYGKG-GDA----TEAEIQAASEMANAHKFICS----LQQVRTSRLLLVMI 1181 (1198)
Q Consensus 1119 -~~IsiV~Qdp~LF~-gTIreNI~~g~~-~~~----tdeei~~Al~~A~l~dfI~~----LP~g~dt~v~~~~~ 1181 (1198)
++|++|||++.+|. .|++||+.++.. ... .++++.++++..++++...+ |..|-.-+++++.+
T Consensus 82 ~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~lara 155 (221)
T TIGR02211 82 NKKLGFIYQFHHLLPDFTALENVAMPLLIGKKSVKEAKERAYEMLEKVGLEHRINHRPSELSGGERQRVAIARA 155 (221)
T ss_pred HhcEEEEecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHH
Confidence 68999999999995 699999986311 011 13457788888888766544 55555555555443
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina. |
| >PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=9.8e-20 Score=209.70 Aligned_cols=139 Identities=24% Similarity=0.408 Sum_probs=112.7
Q ss_pred EEEeeeeEECCCCC-CccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHH---HH
Q 000984 1043 IELHHVSFKYPSRP-DVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKW---LR 1118 (1198)
Q Consensus 1043 I~f~nVsf~Y~~~~-~~~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~~i~l~~---LR 1118 (1198)
|+++||+++|+.+. +.++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.|+.+++..+ +|
T Consensus 2 i~i~~l~~~y~~~~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~ 81 (343)
T PRK11153 2 IELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELRKAR 81 (343)
T ss_pred EEEEeEEEEeCCCCCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHh
Confidence 78999999997211 246999999999999999999999999999999999999999999999999999887654 47
Q ss_pred hhcceecccccccc-ccHHHHHhcCCC-CCCC----HHHHHHHHHHcchHHHHH----hccccccceeeeeec
Q 000984 1119 QQMGLVSQEPVLFN-DTIRANIAYGKG-GDAT----EAEIQAASEMANAHKFIC----SLQQVRTSRLLLVMI 1181 (1198)
Q Consensus 1119 ~~IsiV~Qdp~LF~-gTIreNI~~g~~-~~~t----deei~~Al~~A~l~dfI~----~LP~g~dt~v~~~~~ 1181 (1198)
++|++|||++.+|. .|++||+.++.. ...+ ++++.++++..++.++.. +|..|-.-+++++.+
T Consensus 82 ~~ig~v~q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAra 154 (343)
T PRK11153 82 RQIGMIFQHFNLLSSRTVFDNVALPLELAGTPKAEIKARVTELLELVGLSDKADRYPAQLSGGQKQRVAIARA 154 (343)
T ss_pred cCEEEEeCCCccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHH
Confidence 89999999999986 799999987521 1122 245778888888877654 456666666665543
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() | |
| Query | 1198 | ||||
| 3g5u_A | 1284 | Structure Of P-Glycoprotein Reveals A Molecular Bas | 0.0 | ||
| 3g60_A | 1284 | Structure Of P-Glycoprotein Reveals A Molecular Bas | 0.0 | ||
| 4f4c_A | 1321 | The Crystal Structure Of The Multi-Drug Transporter | 0.0 | ||
| 4ayt_A | 595 | Structure Of The Human Mitochondrial Abc Transporte | 6e-97 | ||
| 4ayt_A | 595 | Structure Of The Human Mitochondrial Abc Transporte | 3e-33 | ||
| 4ayw_A | 619 | Structure Of The Human Mitochondrial Abc Transporte | 3e-96 | ||
| 4ayw_A | 619 | Structure Of The Human Mitochondrial Abc Transporte | 4e-33 | ||
| 3b5y_A | 582 | Crystal Structure Of Msba From Salmonella Typhimuri | 1e-74 | ||
| 3b5y_A | 582 | Crystal Structure Of Msba From Salmonella Typhimuri | 1e-31 | ||
| 3b5w_A | 582 | Crystal Structure Of Eschericia Coli Msba Length = | 1e-74 | ||
| 3b5w_A | 582 | Crystal Structure Of Eschericia Coli Msba Length = | 2e-31 | ||
| 3qf4_B | 598 | Crystal Structure Of A Heterodimeric Abc Transporte | 2e-71 | ||
| 3qf4_B | 598 | Crystal Structure Of A Heterodimeric Abc Transporte | 3e-26 | ||
| 3b5x_A | 582 | Crystal Structure Of Msba From Vibrio Cholerae Leng | 6e-71 | ||
| 3b5x_A | 582 | Crystal Structure Of Msba From Vibrio Cholerae Leng | 5e-25 | ||
| 2hyd_A | 578 | Multidrug Abc Transporter Sav1866 Length = 578 | 7e-62 | ||
| 2hyd_A | 578 | Multidrug Abc Transporter Sav1866 Length = 578 | 7e-27 | ||
| 2ghi_A | 260 | Crystal Structure Of Plasmodium Yoelii Multidrug Re | 7e-58 | ||
| 2ghi_A | 260 | Crystal Structure Of Plasmodium Yoelii Multidrug Re | 5e-21 | ||
| 1mt0_A | 241 | Atp-Binding Domain Of Haemolysin B From Escherichia | 4e-56 | ||
| 1mt0_A | 241 | Atp-Binding Domain Of Haemolysin B From Escherichia | 1e-20 | ||
| 2ff7_A | 247 | The Abc-Atpase Of The Abc-Transporter Hlyb In The A | 4e-56 | ||
| 2ff7_A | 247 | The Abc-Atpase Of The Abc-Transporter Hlyb In The A | 1e-20 | ||
| 2pmk_A | 243 | Crystal Structures Of An Isolated Abc-Atpase In Com | 4e-56 | ||
| 2pmk_A | 243 | Crystal Structures Of An Isolated Abc-Atpase In Com | 1e-20 | ||
| 3b5j_A | 243 | Crystal Structures Of The S504a Mutant Of An Isolat | 9e-56 | ||
| 3b5j_A | 243 | Crystal Structures Of The S504a Mutant Of An Isolat | 3e-20 | ||
| 2ffb_A | 247 | The Crystal Structure Of The Hlyb-Nbd E631q Mutant | 9e-56 | ||
| 2ffb_A | 247 | The Crystal Structure Of The Hlyb-Nbd E631q Mutant | 1e-20 | ||
| 1xef_A | 241 | Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DI | 7e-55 | ||
| 1xef_A | 241 | Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DI | 8e-21 | ||
| 2ffa_A | 247 | Crystal Structure Of Abc-Atpase H662a Of The Abc-Tr | 7e-55 | ||
| 2ffa_A | 247 | Crystal Structure Of Abc-Atpase H662a Of The Abc-Tr | 8e-21 | ||
| 3qf4_A | 587 | Crystal Structure Of A Heterodimeric Abc Transporte | 3e-53 | ||
| 3qf4_A | 587 | Crystal Structure Of A Heterodimeric Abc Transporte | 4e-22 | ||
| 3nh6_A | 306 | Nucleotide Binding Domain Of Human Abcb6 (Apo Struc | 2e-52 | ||
| 3nh6_A | 306 | Nucleotide Binding Domain Of Human Abcb6 (Apo Struc | 2e-20 | ||
| 1mv5_A | 243 | Crystal Structure Of Lmra Atp-Binding Domain Length | 5e-52 | ||
| 1mv5_A | 243 | Crystal Structure Of Lmra Atp-Binding Domain Length | 4e-20 | ||
| 2ixf_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 4e-47 | ||
| 2ixf_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 6e-25 | ||
| 2ixe_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 7e-46 | ||
| 2ixe_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 6e-25 | ||
| 1jj7_A | 260 | Crystal Structure Of The C-Terminal Atpase Domain O | 2e-45 | ||
| 1jj7_A | 260 | Crystal Structure Of The C-Terminal Atpase Domain O | 7e-26 | ||
| 2ixg_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 2e-44 | ||
| 2ixg_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 6e-25 | ||
| 3dhw_C | 343 | Crystal Structure Of Methionine Importer Metni Leng | 8e-23 | ||
| 3dhw_C | 343 | Crystal Structure Of Methionine Importer Metni Leng | 7e-05 | ||
| 3tui_C | 366 | Inward Facing Conformations Of The Metni Methionine | 4e-22 | ||
| 3tui_C | 366 | Inward Facing Conformations Of The Metni Methionine | 5e-05 | ||
| 2it1_A | 362 | Structure Of Ph0203 Protein From Pyrococcus Horikos | 1e-21 | ||
| 2it1_A | 362 | Structure Of Ph0203 Protein From Pyrococcus Horikos | 2e-06 | ||
| 3tuj_C | 366 | Inward Facing Conformations Of The Metni Methionine | 3e-21 | ||
| 3tuj_C | 366 | Inward Facing Conformations Of The Metni Methionine | 9e-05 | ||
| 2yyz_A | 359 | Crystal Structure Of Sugar Abc Transporter, Atp-Bin | 5e-21 | ||
| 2yyz_A | 359 | Crystal Structure Of Sugar Abc Transporter, Atp-Bin | 9e-05 | ||
| 2cbz_A | 237 | Structure Of The Human Multidrug Resistance Protein | 4e-20 | ||
| 3gd7_A | 390 | Crystal Structure Of Human Nbd2 Complexed With N6- | 1e-19 | ||
| 3gd7_A | 390 | Crystal Structure Of Human Nbd2 Complexed With N6- | 2e-06 | ||
| 3c41_J | 242 | Abc Protein Artp In Complex With Amp-PnpMG2+ Length | 1e-19 | ||
| 3c41_J | 242 | Abc Protein Artp In Complex With Amp-PnpMG2+ Length | 2e-07 | ||
| 2olj_A | 263 | Abc Protein Artp In Complex With AdpMG2+ Length = 2 | 2e-19 | ||
| 2olj_A | 263 | Abc Protein Artp In Complex With AdpMG2+ Length = 2 | 2e-07 | ||
| 2onk_A | 240 | Abc Transporter Modbc In Complex With Its Binding P | 6e-19 | ||
| 2onk_A | 240 | Abc Transporter Modbc In Complex With Its Binding P | 5e-04 | ||
| 2pze_A | 229 | Minimal Human Cftr First Nucleotide Binding Domain | 2e-18 | ||
| 2pzg_A | 241 | Minimal Human Cftr First Nucleotide Binding Domain | 2e-18 | ||
| 3d31_A | 348 | Modbc From Methanosarcina Acetivorans Length = 348 | 2e-18 | ||
| 3d31_A | 348 | Modbc From Methanosarcina Acetivorans Length = 348 | 1e-04 | ||
| 1q3h_A | 286 | Mouse Cftr Nbd1 With Amp.Pnp Length = 286 | 3e-18 | ||
| 1r0z_A | 286 | Phosphorylated Cystic Fibrosis Transmembrane Conduc | 3e-18 | ||
| 1z47_A | 355 | Structure Of The Atpase Subunit Cysa Of The Putativ | 3e-18 | ||
| 1z47_A | 355 | Structure Of The Atpase Subunit Cysa Of The Putativ | 4e-05 | ||
| 1xfa_A | 283 | Structure Of Nbd1 From Murine Cftr- F508r Mutant Le | 9e-18 | ||
| 1xmi_A | 291 | Crystal Structure Of Human F508a Nbd1 Domain With A | 1e-17 | ||
| 1xf9_A | 283 | Structure Of Nbd1 From Murine Cftr- F508s Mutant Le | 1e-17 | ||
| 2bbt_A | 290 | Human Deltaf508 Nbd1 With Two Solublizing Mutations | 1e-17 | ||
| 2bbs_A | 290 | Human Deltaf508 Nbd1 With Three Solubilizing Mutati | 1e-17 | ||
| 2pzf_A | 228 | Minimal Human Cftr First Nucleotide Binding Domain | 2e-17 | ||
| 3si7_A | 285 | The Crystal Structure Of The Nbd1 Domain Of The Mou | 3e-17 | ||
| 2bbo_A | 291 | Human Nbd1 With Phe508 Length = 291 | 1e-16 | ||
| 4hlu_A | 268 | Structure Of The Ecfa-a' Heterodimer Bound To Adp L | 1e-16 | ||
| 2yz2_A | 266 | Crystal Structure Of The Abc Transporter In The Cob | 2e-16 | ||
| 4fwi_B | 334 | Crystal Structure Of The Nucleotide-binding Domain | 3e-16 | ||
| 1xmj_A | 290 | Crystal Structure Of Human Deltaf508 Human Nbd1 Dom | 1e-15 | ||
| 1oxs_C | 353 | Crystal Structure Of Glcv, The Abc-Atpase Of The Gl | 2e-15 | ||
| 3fvq_A | 359 | Crystal Structure Of The Nucleotide Binding Domain | 4e-15 | ||
| 3fvq_A | 359 | Crystal Structure Of The Nucleotide Binding Domain | 2e-08 | ||
| 4hlu_D | 268 | Structure Of The Ecfa-a' Heterodimer Bound To Adp L | 5e-15 | ||
| 4hlu_D | 268 | Structure Of The Ecfa-a' Heterodimer Bound To Adp L | 3e-05 | ||
| 1f3o_A | 235 | Crystal Structure Of Mj0796 Atp-Binding Cassette Le | 6e-15 | ||
| 1oxx_K | 353 | Crystal Structure Of Glcv, The Abc-Atpase Of The Gl | 1e-14 | ||
| 1vci_A | 373 | Crystal Structure Of The Atp-binding Cassette Of Mu | 1e-14 | ||
| 1v43_A | 372 | Crystal Structure Of Atpase Subunit Of Abc Sugar Tr | 1e-14 | ||
| 1l2t_A | 235 | Dimeric Structure Of Mj0796, A Bacterial Abc Transp | 3e-14 | ||
| 1l2t_A | 235 | Dimeric Structure Of Mj0796, A Bacterial Abc Transp | 4e-04 | ||
| 3tif_A | 235 | Dimeric Structure Of A Post-Hydrolysis State Of The | 6e-14 | ||
| 3tif_A | 235 | Dimeric Structure Of A Post-Hydrolysis State Of The | 7e-04 | ||
| 3gfo_A | 275 | Structure Of Cbio1 From Clostridium Perfringens: Pa | 1e-13 | ||
| 1b0u_A | 262 | Atp-Binding Subunit Of The Histidine Permease From | 1e-13 | ||
| 1g29_1 | 372 | Malk Length = 372 | 1e-13 | ||
| 1q1b_A | 381 | Crystal Structure Of E. Coli Malk In The Nucleotide | 2e-12 | ||
| 1q12_A | 381 | Crystal Structure Of The Atp-bound E. Coli Malk Len | 2e-12 | ||
| 2d62_A | 375 | Crystal Structure Of Multiple Sugar Binding Transpo | 3e-12 | ||
| 2r6g_A | 381 | The Crystal Structure Of The E. Coli Maltose Transp | 5e-12 | ||
| 1vpl_A | 256 | Crystal Structure Of Abc Transporter Atp-binding Pr | 3e-11 | ||
| 4g1u_C | 266 | X-Ray Structure Of The Bacterial Heme Transporter H | 6e-10 | ||
| 2nq2_C | 253 | An Inward-Facing Conformation Of A Putative Metal-C | 1e-08 | ||
| 2pcj_A | 224 | Crystal Structure Of Abc Transporter (Aq_297) From | 3e-08 | ||
| 2d2e_A | 250 | Crystal Structure Of Atypical Cytoplasmic Abc-Atpas | 1e-07 | ||
| 1ji0_A | 240 | Crystal Structure Analysis Of The Abc Transporter F | 1e-07 | ||
| 3bk7_A | 607 | Structure Of The Complete Abce1RNAASE-L Inhibitor P | 5e-07 | ||
| 3j15_B | 593 | Model Of Ribosome-Bound Archaeal Pelota And Abce1 L | 5e-07 | ||
| 1g9x_A | 257 | Characterization Of The Twinning Structure Of Mj126 | 2e-06 | ||
| 2d3w_A | 248 | Crystal Structure Of Escherichia Coli Sufc, An Atpa | 4e-06 | ||
| 2zu0_C | 267 | Crystal Structure Of Sufc-Sufd Complex Involved In | 4e-06 | ||
| 1g6h_A | 257 | Crystal Structure Of The Adp Conformation Of Mj1267 | 5e-06 | ||
| 1gaj_A | 257 | Crystal Structure Of A Nucleotide-Free Atp-Binding | 8e-06 | ||
| 1yqt_A | 538 | Rnase-L Inhibitor Length = 538 | 1e-05 | ||
| 3pih_A | 916 | T. Maritima Uvra In Complex With Fluorescein-Modifi | 2e-05 | ||
| 4dbl_C | 249 | Crystal Structure Of E159q Mutant Of Btucdf Length | 2e-05 | ||
| 4fi3_C | 249 | Structure Of Vitamin B12 Transporter Btucd-F In A N | 2e-05 | ||
| 2ihy_A | 279 | Structure Of The Staphylococcus Aureus Putative Atp | 4e-05 | ||
| 1sgw_A | 214 | Putative Abc Transporter (Atp-Binding Protein) From | 7e-05 | ||
| 3j16_B | 608 | Models Of Ribosome-Bound Dom34p And Rli1p And Their | 8e-05 | ||
| 1l7v_C | 249 | Bacterial Abc Transporter Involved In B12 Uptake Le | 2e-04 | ||
| 2qi9_C | 249 | Abc-Transporter Btucd In Complex With Its Periplasm | 3e-04 | ||
| 3ozx_A | 538 | Crystal Structure Of Abce1 Of Sulfolubus Solfataric | 8e-04 |
| >pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284 | Back alignment and structure |
|
| >pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284 | Back alignment and structure |
|
| >pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter Length = 1321 | Back alignment and structure |
|
| >pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 Length = 595 | Back alignment and structure |
|
| >pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 Length = 595 | Back alignment and structure |
|
| >pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 (plate Form) Length = 619 | Back alignment and structure |
|
| >pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 (plate Form) Length = 619 | Back alignment and structure |
|
| >pdb|3B5Y|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With Amppnp Length = 582 | Back alignment and structure |
|
| >pdb|3B5Y|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With Amppnp Length = 582 | Back alignment and structure |
|
| >pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba Length = 582 | Back alignment and structure |
|
| >pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba Length = 582 | Back alignment and structure |
|
| >pdb|3QF4|B Chain B, Crystal Structure Of A Heterodimeric Abc Transporter In Its Inward- Facing Conformation Length = 598 | Back alignment and structure |
|
| >pdb|3QF4|B Chain B, Crystal Structure Of A Heterodimeric Abc Transporter In Its Inward- Facing Conformation Length = 598 | Back alignment and structure |
|
| >pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae Length = 582 | Back alignment and structure |
|
| >pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae Length = 582 | Back alignment and structure |
|
| >pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866 Length = 578 | Back alignment and structure |
|
| >pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866 Length = 578 | Back alignment and structure |
|
| >pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug Resistance Protein 2 Length = 260 | Back alignment and structure |
|
| >pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug Resistance Protein 2 Length = 260 | Back alignment and structure |
|
| >pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli Length = 241 | Back alignment and structure |
|
| >pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli Length = 241 | Back alignment and structure |
|
| >pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp Bound State Length = 247 | Back alignment and structure |
|
| >pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp Bound State Length = 247 | Back alignment and structure |
|
| >pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex With Tnp-Adp Length = 243 | Back alignment and structure |
|
| >pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex With Tnp-Adp Length = 243 | Back alignment and structure |
|
| >pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated Abc-atpase In Complex With Tnp-adp Length = 243 | Back alignment and structure |
|
| >pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated Abc-atpase In Complex With Tnp-adp Length = 243 | Back alignment and structure |
|
| >pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In Complex With Adp Length = 247 | Back alignment and structure |
|
| >pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In Complex With Adp Length = 247 | Back alignment and structure |
|
| >pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF HLYB-Nbd Length = 241 | Back alignment and structure |
|
| >pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF HLYB-Nbd Length = 241 | Back alignment and structure |
|
| >pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The Abc-Transporter Hlyb In Complex With Adp Length = 247 | Back alignment and structure |
|
| >pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The Abc-Transporter Hlyb In Complex With Adp Length = 247 | Back alignment and structure |
|
| >pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In Its Inward- Facing Conformation Length = 587 | Back alignment and structure |
|
| >pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In Its Inward- Facing Conformation Length = 587 | Back alignment and structure |
|
| >pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure) Length = 306 | Back alignment and structure |
|
| >pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure) Length = 306 | Back alignment and structure |
|
| >pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain Length = 243 | Back alignment and structure |
|
| >pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain Length = 243 | Back alignment and structure |
|
| >pdb|2IXF|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (D645q, Q678h Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|2IXF|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (D645q, Q678h Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|2IXE|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (d645n Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|2IXE|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (d645n Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human Tap1 Length = 260 | Back alignment and structure |
|
| >pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human Tap1 Length = 260 | Back alignment and structure |
|
| >pdb|2IXG|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (S621a, G622v, D645n Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|2IXG|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (S621a, G622v, D645n Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|3DHW|C Chain C, Crystal Structure Of Methionine Importer Metni Length = 343 | Back alignment and structure |
|
| >pdb|3DHW|C Chain C, Crystal Structure Of Methionine Importer Metni Length = 343 | Back alignment and structure |
|
| >pdb|3TUI|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc Transporter: Cy5 Native Crystal Form Length = 366 | Back alignment and structure |
|
| >pdb|3TUI|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc Transporter: Cy5 Native Crystal Form Length = 366 | Back alignment and structure |
|
| >pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii Length = 362 | Back alignment and structure |
|
| >pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii Length = 362 | Back alignment and structure |
|
| >pdb|3TUJ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc Transporter: Dm Crystal Form Length = 366 | Back alignment and structure |
|
| >pdb|3TUJ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc Transporter: Dm Crystal Form Length = 366 | Back alignment and structure |
|
| >pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding Protein Length = 359 | Back alignment and structure |
|
| >pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding Protein Length = 359 | Back alignment and structure |
|
| >pdb|2CBZ|A Chain A, Structure Of The Human Multidrug Resistance Protein 1 Nucleotide Binding Domain 1 Length = 237 | Back alignment and structure |
|
| >pdb|3GD7|A Chain A, Crystal Structure Of Human Nbd2 Complexed With N6- Phenylethyl-Atp (P-Atp) Length = 390 | Back alignment and structure |
|
| >pdb|3GD7|A Chain A, Crystal Structure Of Human Nbd2 Complexed With N6- Phenylethyl-Atp (P-Atp) Length = 390 | Back alignment and structure |
|
| >pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+ Length = 242 | Back alignment and structure |
|
| >pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+ Length = 242 | Back alignment and structure |
|
| >pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+ Length = 263 | Back alignment and structure |
|
| >pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+ Length = 263 | Back alignment and structure |
|
| >pdb|2ONK|A Chain A, Abc Transporter Modbc In Complex With Its Binding Protein Moda Length = 240 | Back alignment and structure |
|
| >pdb|2ONK|A Chain A, Abc Transporter Modbc In Complex With Its Binding Protein Moda Length = 240 | Back alignment and structure |
|
| >pdb|2PZE|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Head-To-Tail Dimer Length = 229 | Back alignment and structure |
|
| >pdb|2PZG|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Monomer Length = 241 | Back alignment and structure |
|
| >pdb|3D31|A Chain A, Modbc From Methanosarcina Acetivorans Length = 348 | Back alignment and structure |
|
| >pdb|3D31|A Chain A, Modbc From Methanosarcina Acetivorans Length = 348 | Back alignment and structure |
|
| >pdb|1Q3H|A Chain A, Mouse Cftr Nbd1 With Amp.Pnp Length = 286 | Back alignment and structure |
|
| >pdb|1R0Z|A Chain A, Phosphorylated Cystic Fibrosis Transmembrane Conductance Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1) With Atp Length = 286 | Back alignment and structure |
|
| >pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative Sulfate Atp-Binding Cassette (Abc) Transporter From Alicyclobacillus Acidocaldarius Length = 355 | Back alignment and structure |
|
| >pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative Sulfate Atp-Binding Cassette (Abc) Transporter From Alicyclobacillus Acidocaldarius Length = 355 | Back alignment and structure |
|
| >pdb|1XFA|A Chain A, Structure Of Nbd1 From Murine Cftr- F508r Mutant Length = 283 | Back alignment and structure |
|
| >pdb|1XMI|A Chain A, Crystal Structure Of Human F508a Nbd1 Domain With Atp Length = 291 | Back alignment and structure |
|
| >pdb|1XF9|A Chain A, Structure Of Nbd1 From Murine Cftr- F508s Mutant Length = 283 | Back alignment and structure |
|
| >pdb|2BBT|A Chain A, Human Deltaf508 Nbd1 With Two Solublizing Mutations. Length = 290 | Back alignment and structure |
|
| >pdb|2BBS|A Chain A, Human Deltaf508 Nbd1 With Three Solubilizing Mutations Length = 290 | Back alignment and structure |
|
| >pdb|2PZF|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Head-To-Tail Dimer With Delta F508 Length = 228 | Back alignment and structure |
|
| >pdb|3SI7|A Chain A, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr Protein, Deltaf508 Mutant Length = 285 | Back alignment and structure |
|
| >pdb|2BBO|A Chain A, Human Nbd1 With Phe508 Length = 291 | Back alignment and structure |
|
| >pdb|4HLU|A Chain A, Structure Of The Ecfa-a' Heterodimer Bound To Adp Length = 268 | Back alignment and structure |
|
| >pdb|2YZ2|A Chain A, Crystal Structure Of The Abc Transporter In The Cobalt Transport System Length = 266 | Back alignment and structure |
|
| >pdb|4FWI|B Chain B, Crystal Structure Of The Nucleotide-binding Domain Of A Dipeptide Abc Transporter Length = 334 | Back alignment and structure |
|
| >pdb|1XMJ|A Chain A, Crystal Structure Of Human Deltaf508 Human Nbd1 Domain With Atp Length = 290 | Back alignment and structure |
|
| >pdb|1OXS|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc Transporter From Sulfolobus Solfataricus Length = 353 | Back alignment and structure |
|
| >pdb|3FVQ|A Chain A, Crystal Structure Of The Nucleotide Binding Domain Fbpc Complexed With Atp Length = 359 | Back alignment and structure |
|
| >pdb|3FVQ|A Chain A, Crystal Structure Of The Nucleotide Binding Domain Fbpc Complexed With Atp Length = 359 | Back alignment and structure |
|
| >pdb|4HLU|D Chain D, Structure Of The Ecfa-a' Heterodimer Bound To Adp Length = 268 | Back alignment and structure |
|
| >pdb|4HLU|D Chain D, Structure Of The Ecfa-a' Heterodimer Bound To Adp Length = 268 | Back alignment and structure |
|
| >pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette Length = 235 | Back alignment and structure |
|
| >pdb|1OXX|K Chain K, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc Transporter From Sulfolobus Solfataricus Length = 353 | Back alignment and structure |
|
| >pdb|1VCI|A Chain A, Crystal Structure Of The Atp-binding Cassette Of Multisugar Transporter From Pyrococcus Horikoshii Ot3 Complexed With Atp Length = 373 | Back alignment and structure |
|
| >pdb|1V43|A Chain A, Crystal Structure Of Atpase Subunit Of Abc Sugar Transporter Length = 372 | Back alignment and structure |
|
| >pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter Cassette Length = 235 | Back alignment and structure |
|
| >pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter Cassette Length = 235 | Back alignment and structure |
|
| >pdb|3TIF|A Chain A, Dimeric Structure Of A Post-Hydrolysis State Of The Atp-Binding Cassette Mj0796 Bound To Adp And Pi Length = 235 | Back alignment and structure |
|
| >pdb|3TIF|A Chain A, Dimeric Structure Of A Post-Hydrolysis State Of The Atp-Binding Cassette Mj0796 Bound To Adp And Pi Length = 235 | Back alignment and structure |
|
| >pdb|3GFO|A Chain A, Structure Of Cbio1 From Clostridium Perfringens: Part Of The Abc Transporter Complex Cbionq Length = 275 | Back alignment and structure |
|
| >pdb|1B0U|A Chain A, Atp-Binding Subunit Of The Histidine Permease From Salmonella Typhimurium Length = 262 | Back alignment and structure |
|
| >pdb|1G29|1 Chain 1, Malk Length = 372 | Back alignment and structure |
|
| >pdb|1Q1B|A Chain A, Crystal Structure Of E. Coli Malk In The Nucleotide-Free Form Length = 381 | Back alignment and structure |
|
| >pdb|1Q12|A Chain A, Crystal Structure Of The Atp-bound E. Coli Malk Length = 381 | Back alignment and structure |
|
| >pdb|2D62|A Chain A, Crystal Structure Of Multiple Sugar Binding Transport Atp- Binding Protein Length = 375 | Back alignment and structure |
|
| >pdb|2R6G|A Chain A, The Crystal Structure Of The E. Coli Maltose Transporter Length = 381 | Back alignment and structure |
|
| >pdb|1VPL|A Chain A, Crystal Structure Of Abc Transporter Atp-binding Protein (tm0544) From Thermotoga Maritima At 2.10 A Resolution Length = 256 | Back alignment and structure |
|
| >pdb|4G1U|C Chain C, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv From Yersinia Pestis Length = 266 | Back alignment and structure |
|
| >pdb|2NQ2|C Chain C, An Inward-Facing Conformation Of A Putative Metal-Chelate Type Abc Transporter. Length = 253 | Back alignment and structure |
|
| >pdb|2PCJ|A Chain A, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex Aeolicus Vf5 Length = 224 | Back alignment and structure |
|
| >pdb|2D2E|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc From Thermus Thermophilus Hb8 Length = 250 | Back alignment and structure |
|
| >pdb|1JI0|A Chain A, Crystal Structure Analysis Of The Abc Transporter From Thermotoga Maritima Length = 240 | Back alignment and structure |
|
| >pdb|3BK7|A Chain A, Structure Of The Complete Abce1RNAASE-L Inhibitor Protein From Pyrococcus Abysii Length = 607 | Back alignment and structure |
|
| >pdb|3J15|B Chain B, Model Of Ribosome-Bound Archaeal Pelota And Abce1 Length = 593 | Back alignment and structure |
|
| >pdb|1G9X|A Chain A, Characterization Of The Twinning Structure Of Mj1267, An Atp-Binding Cassette Of An Abc Transporter Length = 257 | Back alignment and structure |
|
| >pdb|2D3W|A Chain A, Crystal Structure Of Escherichia Coli Sufc, An Atpase Compenent Of The Suf Iron-Sulfur Cluster Assembly Machinery Length = 248 | Back alignment and structure |
|
| >pdb|2ZU0|C Chain C, Crystal Structure Of Sufc-Sufd Complex Involved In The Iron- Sulfur Cluster Biosynthesis Length = 267 | Back alignment and structure |
|
| >pdb|1G6H|A Chain A, Crystal Structure Of The Adp Conformation Of Mj1267, An Atp- Binding Cassette Of An Abc Transporter Length = 257 | Back alignment and structure |
|
| >pdb|1GAJ|A Chain A, Crystal Structure Of A Nucleotide-Free Atp-Binding Cassette From An Abc Transporter Length = 257 | Back alignment and structure |
|
| >pdb|1YQT|A Chain A, Rnase-L Inhibitor Length = 538 | Back alignment and structure |
|
| >pdb|3PIH|A Chain A, T. Maritima Uvra In Complex With Fluorescein-Modified Dna Length = 916 | Back alignment and structure |
|
| >pdb|4DBL|C Chain C, Crystal Structure Of E159q Mutant Of Btucdf Length = 249 | Back alignment and structure |
|
| >pdb|4FI3|C Chain C, Structure Of Vitamin B12 Transporter Btucd-F In A Nucleotide-Bound State Length = 249 | Back alignment and structure |
|
| >pdb|2IHY|A Chain A, Structure Of The Staphylococcus Aureus Putative Atpase Subunit Of An Atp-Binding Cassette (Abc) Transporter Length = 279 | Back alignment and structure |
|
| >pdb|1SGW|A Chain A, Putative Abc Transporter (Atp-Binding Protein) From Pyrococcus Furiosus Pfu-867808-001 Length = 214 | Back alignment and structure |
|
| >pdb|3J16|B Chain B, Models Of Ribosome-Bound Dom34p And Rli1p And Their Ribosomal Binding Partners Length = 608 | Back alignment and structure |
|
| >pdb|1L7V|C Chain C, Bacterial Abc Transporter Involved In B12 Uptake Length = 249 | Back alignment and structure |
|
| >pdb|2QI9|C Chain C, Abc-Transporter Btucd In Complex With Its Periplasmic Binding Protein Btuf Length = 249 | Back alignment and structure |
|
| >pdb|3OZX|A Chain A, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus (-Fes Domain) Length = 538 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 1198 | |||
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 0.0 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 0.0 | |
| 2yl4_A | 595 | ATP-binding cassette SUB-family B member 10, mitoc | 0.0 | |
| 2yl4_A | 595 | ATP-binding cassette SUB-family B member 10, mitoc | 1e-169 | |
| 3b60_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 1e-172 | |
| 3b60_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 1e-107 | |
| 3b5x_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 1e-167 | |
| 3b5x_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 1e-105 | |
| 4a82_A | 578 | Cystic fibrosis transmembrane conductance regulat; | 1e-161 | |
| 4a82_A | 578 | Cystic fibrosis transmembrane conductance regulat; | 3e-99 | |
| 2ixe_A | 271 | Antigen peptide transporter 1; ABC ATPase, hydrola | 1e-155 | |
| 2ixe_A | 271 | Antigen peptide transporter 1; ABC ATPase, hydrola | 4e-81 | |
| 2ff7_A | 247 | Alpha-hemolysin translocation ATP-binding protein | 1e-149 | |
| 2ff7_A | 247 | Alpha-hemolysin translocation ATP-binding protein | 9e-67 | |
| 1mv5_A | 243 | LMRA, multidrug resistance ABC transporter ATP-bin | 1e-137 | |
| 1mv5_A | 243 | LMRA, multidrug resistance ABC transporter ATP-bin | 4e-66 | |
| 2ghi_A | 260 | Transport protein; multidrug resistance protein, M | 1e-130 | |
| 2ghi_A | 260 | Transport protein; multidrug resistance protein, M | 3e-61 | |
| 3qf4_B | 598 | Uncharacterized ABC transporter ATP-binding prote | 1e-129 | |
| 3qf4_B | 598 | Uncharacterized ABC transporter ATP-binding prote | 1e-74 | |
| 3nh6_A | 306 | ATP-binding cassette SUB-family B member 6, mitoc; | 1e-120 | |
| 3nh6_A | 306 | ATP-binding cassette SUB-family B member 6, mitoc; | 4e-54 | |
| 3qf4_A | 587 | ABC transporter, ATP-binding protein; multidrug tr | 1e-107 | |
| 3qf4_A | 587 | ABC transporter, ATP-binding protein; multidrug tr | 2e-59 | |
| 3gd7_A | 390 | Fusion complex of cystic fibrosis transmembrane co | 1e-63 | |
| 3gd7_A | 390 | Fusion complex of cystic fibrosis transmembrane co | 9e-23 | |
| 2pze_A | 229 | Cystic fibrosis transmembrane conductance regulat; | 5e-44 | |
| 2pze_A | 229 | Cystic fibrosis transmembrane conductance regulat; | 2e-13 | |
| 2cbz_A | 237 | Multidrug resistance-associated protein 1; ABC pro | 1e-42 | |
| 2cbz_A | 237 | Multidrug resistance-associated protein 1; ABC pro | 7e-12 | |
| 2bbs_A | 290 | Cystic fibrosis transmembrane conductance regulato | 3e-42 | |
| 2bbs_A | 290 | Cystic fibrosis transmembrane conductance regulato | 5e-11 | |
| 3gfo_A | 275 | Cobalt import ATP-binding protein CBIO 1; structur | 6e-42 | |
| 3gfo_A | 275 | Cobalt import ATP-binding protein CBIO 1; structur | 2e-19 | |
| 2pjz_A | 263 | Hypothetical protein ST1066; ATP binding protein, | 3e-40 | |
| 2pjz_A | 263 | Hypothetical protein ST1066; ATP binding protein, | 3e-16 | |
| 2yz2_A | 266 | Putative ABC transporter ATP-binding protein TM_0; | 5e-40 | |
| 2yz2_A | 266 | Putative ABC transporter ATP-binding protein TM_0; | 6e-18 | |
| 3tui_C | 366 | Methionine import ATP-binding protein METN; ABC-tr | 2e-38 | |
| 3tui_C | 366 | Methionine import ATP-binding protein METN; ABC-tr | 6e-14 | |
| 2ihy_A | 279 | ABC transporter, ATP-binding protein; ATPase, ABC | 3e-38 | |
| 2ihy_A | 279 | ABC transporter, ATP-binding protein; ATPase, ABC | 2e-14 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 2e-33 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 9e-28 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 3e-13 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 1e-09 | |
| 2olj_A | 263 | Amino acid ABC transporter; ABC domain, ATPase, hy | 7e-33 | |
| 2olj_A | 263 | Amino acid ABC transporter; ABC domain, ATPase, hy | 3e-13 | |
| 3fvq_A | 359 | Fe(3+) IONS import ATP-binding protein FBPC; nucle | 3e-32 | |
| 3fvq_A | 359 | Fe(3+) IONS import ATP-binding protein FBPC; nucle | 1e-13 | |
| 1b0u_A | 262 | Histidine permease; ABC transporter, transport pro | 4e-32 | |
| 1b0u_A | 262 | Histidine permease; ABC transporter, transport pro | 2e-11 | |
| 2onk_A | 240 | Molybdate/tungstate ABC transporter, ATP-binding p | 8e-32 | |
| 2onk_A | 240 | Molybdate/tungstate ABC transporter, ATP-binding p | 2e-08 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 3e-31 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 8e-29 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 9e-09 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 2e-08 | |
| 1sgw_A | 214 | Putative ABC transporter; structural genomics, P p | 3e-31 | |
| 1sgw_A | 214 | Putative ABC transporter; structural genomics, P p | 3e-11 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 7e-31 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 2e-30 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 7e-09 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 2e-06 | |
| 1z47_A | 355 | CYSA, putative ABC-transporter ATP-binding protein | 8e-31 | |
| 1z47_A | 355 | CYSA, putative ABC-transporter ATP-binding protein | 1e-13 | |
| 2nq2_C | 253 | Hypothetical ABC transporter ATP-binding protein H | 1e-30 | |
| 2nq2_C | 253 | Hypothetical ABC transporter ATP-binding protein H | 3e-10 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 1e-29 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 1e-29 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 6e-09 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 3e-07 | |
| 3tif_A | 235 | Uncharacterized ABC transporter ATP-binding prote; | 1e-29 | |
| 3tif_A | 235 | Uncharacterized ABC transporter ATP-binding prote; | 2e-10 | |
| 1vpl_A | 256 | ABC transporter, ATP-binding protein; TM0544, stru | 2e-29 | |
| 1vpl_A | 256 | ABC transporter, ATP-binding protein; TM0544, stru | 2e-09 | |
| 2pcj_A | 224 | ABC transporter, lipoprotein-releasing system ATP- | 3e-28 | |
| 2pcj_A | 224 | ABC transporter, lipoprotein-releasing system ATP- | 2e-10 | |
| 3d31_A | 348 | Sulfate/molybdate ABC transporter, ATP-binding pro | 6e-28 | |
| 3d31_A | 348 | Sulfate/molybdate ABC transporter, ATP-binding pro | 1e-10 | |
| 2qi9_C | 249 | Vitamin B12 import ATP-binding protein BTUD; inner | 1e-27 | |
| 2qi9_C | 249 | Vitamin B12 import ATP-binding protein BTUD; inner | 5e-13 | |
| 1oxx_K | 353 | GLCV, glucose, ABC transporter, ATP binding protei | 3e-25 | |
| 1oxx_K | 353 | GLCV, glucose, ABC transporter, ATP binding protei | 8e-08 | |
| 2it1_A | 362 | 362AA long hypothetical maltose/maltodextrin trans | 3e-20 | |
| 2it1_A | 362 | 362AA long hypothetical maltose/maltodextrin trans | 2e-06 | |
| 2yyz_A | 359 | Sugar ABC transporter, ATP-binding protein; sugar | 5e-18 | |
| 2yyz_A | 359 | Sugar ABC transporter, ATP-binding protein; sugar | 6e-05 | |
| 1g29_1 | 372 | MALK, maltose transport protein MALK; ATPase, acti | 2e-17 | |
| 1g29_1 | 372 | MALK, maltose transport protein MALK; ATPase, acti | 2e-05 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 4e-17 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 3e-10 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 3e-06 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 2e-05 | |
| 1v43_A | 372 | Sugar-binding transport ATP-binding protein; ATPas | 5e-17 | |
| 1v43_A | 372 | Sugar-binding transport ATP-binding protein; ATPas | 2e-05 | |
| 1g6h_A | 257 | High-affinity branched-chain amino acid transport | 2e-16 | |
| 1g6h_A | 257 | High-affinity branched-chain amino acid transport | 6e-07 | |
| 3rlf_A | 381 | Maltose/maltodextrin import ATP-binding protein M; | 1e-14 | |
| 3rlf_A | 381 | Maltose/maltodextrin import ATP-binding protein M; | 1e-04 | |
| 1ji0_A | 240 | ABC transporter; ATP binding protein, structural g | 2e-14 | |
| 1ji0_A | 240 | ABC transporter; ATP binding protein, structural g | 4e-07 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 1e-13 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 1e-09 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 1e-08 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 4e-06 | |
| 3qkt_A | 339 | DNA double-strand break repair RAD50 ATPase; RECA- | 3e-09 | |
| 2d2e_A | 250 | SUFC protein; ABC-ATPase, SUF protein, 310-helix, | 8e-09 | |
| 2d2e_A | 250 | SUFC protein; ABC-ATPase, SUF protein, 310-helix, | 3e-04 | |
| 2zu0_C | 267 | Probable ATP-dependent transporter SUFC; iron-sulf | 3e-08 | |
| 2zu0_C | 267 | Probable ATP-dependent transporter SUFC; iron-sulf | 4e-04 | |
| 1f2t_B | 148 | RAD50 ABC-ATPase; DNA double-strand break repair, | 4e-08 | |
| 3auy_A | 371 | DNA double-strand break repair RAD50 ATPase; DNA r | 1e-04 |
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284 | Back alignment and structure |
|---|
Score = 1526 bits (3954), Expect = 0.0
Identities = 444/1175 (37%), Positives = 693/1175 (58%), Gaps = 38/1175 (3%)
Query: 15 SQEEVGKDSSMSGNEHDSEKGKQTEKTESVPFYKLFTFADSADTALMIIGSIGAIGNGLC 74
++ G+ K ++ EK +V +F +A D M++G++ AI +G+
Sbjct: 4 EEDLKGRADKNFSKMGKKSKKEKKEKKPAVSVLTMFRYAGWLDRLYMLVGTLAAIIHGVA 63
Query: 75 LPLMTLLFGDLINTFGDNQNNSET----------------VDKVSKVAVKFVYLGIGSGI 118
LPLM L+FGD+ ++F N S+ ++++ A + +G G I
Sbjct: 64 LPLMMLIFGDMTDSFASVGNVSKNSTNMSEADKRAMFAKLEEEMTTYAYYYTGIGAGVLI 123
Query: 119 ASFLQVTCWMITGERQATRIRGLYLKTILRQDVAFFDNETNTGEVVGRMSGDTVLIQDAM 178
+++QV+ W + RQ +IR + I+ Q++ +FD GE+ R++ D I + +
Sbjct: 124 VAYIQVSFWCLAAGRQIHKIRQKFFHAIMNQEIGWFDVHD-VGELNTRLTDDVSKINEGI 182
Query: 179 GEKVGKFLQLMATFLGGFLIAFIKGWLLTLVMLSSIPLLAMSGGVMAIMISKMSSRGQGA 238
G+K+G F Q MATF GGF+I F +GW LTLV+L+ P+L +S G+ A ++S + + A
Sbjct: 183 GDKIGMFFQAMATFFGGFIIGFTRGWKLTLVILAISPVLGLSAGIWAKILSSFTDKELHA 242
Query: 239 YAKAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYKSGVQEGLAAGIGLGMVMLIV 298
YAKA +V E+ + +IRTV +F G+K+ + Y L A + G+++ + A I +G L++
Sbjct: 243 YAKAGAVAEEVLAAIRTVIAFGGQKKELERYNNNLEEAKRLGIKKAITANISMGAAFLLI 302
Query: 299 FCSYALSVWYGGKLILEEGYNGGQVVNVMVAVLTGSMSLGEASPCLSAFGAGQAAAFKMF 358
+ SYAL+ WYG L++ + Y+ GQV+ V +VL G+ S+G+ASP + AF + AA+++F
Sbjct: 303 YASYALAFWYGTSLVISKEYSIGQVLTVFFSVLIGAFSVGQASPNIEAFANARGAAYEVF 362
Query: 359 ETINRKPEIDAYDTKGKILDDIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALV 418
+ I+ KP ID++ G D+I+G++E ++++FSYP+R QI G ++ + SG T ALV
Sbjct: 363 KIIDNKPSIDSFSKSGHKPDNIQGNLEFKNIHFSYPSRKEVQILKGLNLKVKSGQTVALV 422
Query: 419 GQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKD 478
G SG GKST + L++R YDP G V IDG +++ ++++R+ IG+VSQEPVLF +I +
Sbjct: 423 GNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRTINVRYLREIIGVVSQEPVLFATTIAE 482
Query: 479 NIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAIL 538
NI YG++D T +EI A + ANA FI KLP DTLVGE G QLSGGQKQRIAIARA++
Sbjct: 483 NIRYGREDVTMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALV 542
Query: 539 KDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKI 598
++P+ILLLDEATSALD ESE VVQ ALD+ RTT+++AHRLSTVRNAD+IA G I
Sbjct: 543 RNPKILLLDEATSALDTESEAVVQAALDKAREGRTTIVIAHRLSTVRNADVIAGFDGGVI 602
Query: 599 VEKGTHSKLVEDPEGAYSQLIRLQEANKESEQTIDGQRKSEISMESLRHSSHRMSLRRSI 658
VE+G H +L+ + +G Y +L+ Q A E E + + + + +
Sbjct: 603 VEQGNHDELMRE-KGIYFKLVMTQTAGNEIELGNEACKSKD--------EIDNLDMSSKD 653
Query: 659 SRGSSIGNSSRHSISVSFGLPSGQFADTALGEPAGPSQPTEEVAPEVPTRRLAYLNKPEI 718
S S I S + + + +E P R+ LN E
Sbjct: 654 SGSSLIRRRSTRKSICGPHDQDRKLSTK---------EALDEDVPPASFWRILKLNSTEW 704
Query: 719 PVILAGTIAAMANGVILPIYGLLISSVIETFFKP--PHELKKDSRFWALIYLALGAGSFL 776
P + G A+ NG + P + ++ S V+ F P +++S ++L++L LG SF+
Sbjct: 705 PYFVVGIFCAIINGGLQPAFSVIFSKVVGVFTNGGPPETQRQNSNLFSLLFLILGIISFI 764
Query: 777 LSPAQSYFFAVAGNKLIQRIRSMCFEKVIHMEVSWFDEPEHSSGAIGARLSADAASVRAL 836
Q + F AG L +R+R M F+ ++ +VSWFD+P++++GA+ RL+ DAA V+
Sbjct: 765 TFFLQGFTFGKAGEILTKRLRYMVFKSMLRQDVSWFDDPKNTTGALTTRLANDAAQVKGA 824
Query: 837 VGDALARIVQNISTAAAGLIIAFTASWQLALIILVMLPLIGVSGYTQMKFMKGFSADAKM 896
G LA I QNI+ G+II+ WQL L++L ++P+I ++G +MK + G + K
Sbjct: 825 TGSRLAVIFQNIANLGTGIIISLIYGWQLTLLLLAIVPIIAIAGVVEMKMLSGQALKDKK 884
Query: 897 KYEEASQVANDAVGSIRTVASFCAEEKVMQLYKKKCEAPMKTGIRQGMVSGGGFGASFFL 956
+ E + ++A +A+ + RTV S E+K +Y + + P + +++ V G F + +
Sbjct: 885 ELEGSGKIATEAIENFRTVVSLTREQKFETMYAQSLQIPYRNAMKKAHVFGITFSFTQAM 944
Query: 957 LFAFYAASFYAGARLVEDGKATFSDVFKVFFSLTMTAIGISQSSSFSSDSNKAKSAAASI 1016
++ YAA+F GA LV TF +V VF ++ A+ + Q SSF+ D KA +A+ I
Sbjct: 945 MYFSYAAAFRFGAYLVTQQLMTFENVLLVFSAIVFGAMAVGQVSSFAPDYAKATVSASHI 1004
Query: 1017 FAIIDRESKIDPSDESGTILEDVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVAL 1076
II++ +ID G ++G ++ V F YP+RP + V + L+L+++ G+T+AL
Sbjct: 1005 IRIIEKTPEIDSYSTQGLKPNMLEGNVQFSGVVFNYPTRPSIPVLQGLSLEVKKGQTLAL 1064
Query: 1077 VGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIR 1136
VG SG GKSTVV LL+RFYDP AG + LDG EI++L ++WLR Q+G+VSQEP+LF+ +I
Sbjct: 1065 VGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLRAQLGIVSQEPILFDCSIA 1124
Query: 1137 ANIAYGK-GGDATEAEIQAASEMANAHKFICSLQQ 1170
NIAYG + EI A++ AN H+FI SL
Sbjct: 1125 ENIAYGDNSRVVSYEEIVRAAKEANIHQFIDSLPD 1159
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284 | Back alignment and structure |
|---|
Score = 741 bits (1915), Expect = 0.0
Identities = 226/635 (35%), Positives = 355/635 (55%), Gaps = 5/635 (0%)
Query: 4 ESNSNEASASKSQEEVGKDSSMSGNEHDSEKGKQTEKTESVPFYKLFTFADSADTALMII 63
+S + + + S K E F+++ S + ++
Sbjct: 651 SKDSGSSLIRRRSTRKSICGPHDQDRKLSTKEALDEDVPPASFWRILKLN-STEWPYFVV 709
Query: 64 GSIGAIGNGLCLPLMTLLFGDLINTFGDNQNNSETVDKVSKVAVKFVYLGIGSGIASFLQ 123
G AI NG P +++F ++ F + + ++ F+ LGI S I FLQ
Sbjct: 710 GIFCAIINGGLQPAFSVIFSKVVGVFTNGGPPETQRQNSNLFSLLFLILGIISFITFFLQ 769
Query: 124 VTCWMITGERQATRIRGLYLKTILRQDVAFFDNETN-TGEVVGRMSGDTVLIQDAMGEKV 182
+ GE R+R + K++LRQDV++FD+ N TG + R++ D ++ A G ++
Sbjct: 770 GFTFGKAGEILTKRLRYMVFKSMLRQDVSWFDDPKNTTGALTTRLANDAAQVKGATGSRL 829
Query: 183 GKFLQLMATFLGGFLIAFIKGWLLTLVMLSSIPLLAMSGGVMAIMISKMSSRGQGAYAKA 242
Q +A G +I+ I GW LTL++L+ +P++A++G V M+S + + + +
Sbjct: 830 AVIFQNIANLGTGIIISLIYGWQLTLLLLAIVPIIAIAGVVEMKMLSGQALKDKKELEGS 889
Query: 243 ASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYKSGVQEGLAAGIGLGMVMLIVFCSY 302
+ + I + RTV S T E++ + Y + L Y++ +++ GI +++ SY
Sbjct: 890 GKIATEAIENFRTVVSLTREQKFETMYAQSLQIPYRNAMKKAHVFGITFSFTQAMMYFSY 949
Query: 303 ALSVWYGGKLILEEGYNGGQVVNVMVAVLTGSMSLGEASPCLSAFGAGQAAAFKMFETIN 362
A + +G L+ ++ V+ V A++ G+M++G+ S + +A + I
Sbjct: 950 AAAFRFGAYLVTQQLMTFENVLLVFSAIVFGAMAVGQVSSFAPDYAKATVSASHIIRIIE 1009
Query: 363 RKPEIDAYDTKGKILDDIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSG 422
+ PEID+Y T+G + + G+++ V F+YP RP+ + G S+ + G T ALVG SG
Sbjct: 1010 KTPEIDSYSTQGLKPNMLEGNVQFSGVVFNYPTRPSIPVLQGLSLEVKKGQTLALVGSSG 1069
Query: 423 SGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAY 482
GKSTV+ L+ERFYDP AG V +DG +K+ +QW+R ++G+VSQEP+LF SI +NIAY
Sbjct: 1070 CGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLRAQLGIVSQEPILFDCSIAENIAY 1129
Query: 483 GKDD--ATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKD 540
G + + EEI A + AN +FID LP +T VG+ GTQLSGGQKQRIAIARA+++
Sbjct: 1130 GDNSRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALVRQ 1189
Query: 541 PRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVE 600
P ILLLDEATSALD ESEKVVQEALD+ RT +++AHRLST++NAD+I VI GK+ E
Sbjct: 1190 PHILLLDEATSALDTESEKVVQEALDKAREGRTCIVIAHRLSTIQNADLIVVIQNGKVKE 1249
Query: 601 KGTHSKLVEDPEGAYSQLIRLQEANKESEQTIDGQ 635
GTH +L+ +G Y ++ +Q K S
Sbjct: 1250 HGTHQQLLA-QKGIYFSMVSVQAGAKRSYVHHHHH 1283
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A Length = 582 | Back alignment and structure |
|---|
Score = 520 bits (1341), Expect = e-172
Identities = 178/564 (31%), Positives = 300/564 (53%), Gaps = 11/564 (1%)
Query: 60 LMIIGSIGAIGNGLCLPLMTLLFGDLINTFGDNQNNSETVDKVSKVAVKFVYLGIGSGIA 119
+I+ I I N M L L++ + + + + + L I GI
Sbjct: 26 GLIVAGIALILNAASDTFMLSLLKPLLDDGFGKTDR----SVLLWMPLVVIGLMILRGIT 81
Query: 120 SFLQVTCWMITGERQATRIRGLYLKTILRQDVAFFDNETNTGEVVGRMSGDTVLIQDAMG 179
S++ C + +R ++ VAFFD +TG ++ R++ D+ + +
Sbjct: 82 SYISSYCISWVSGKVVMTMRRRLFGHMMGMPVAFFDK-QSTGTLLSRITYDSEQVASSSS 140
Query: 180 EKVGKFLQLMATFLGGFLIAFIKGWLLTLVMLSSIPLLAMSGGVMAIMISKMSSRGQGAY 239
+ ++ A+ +G F++ F W L+++++ P+++++ V++ +S Q
Sbjct: 141 GALITVVREGASIIGLFIMMFYYSWQLSIILVVLAPIVSIAIRVVSKRFRSISKNMQNTM 200
Query: 240 AKAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYKSGVQEGLAAGIGLGMVMLIVF 299
+ + EQ + + V F G++ + K G++ A+ I ++ LI
Sbjct: 201 GQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNKMRLQGMKMVSASSISDPIIQLIAS 260
Query: 300 CSYALSVWYGGKLILEEGYNGGQVVNVMVAVLTGSMSLGEASPCLSAFGAGQAAAFKMFE 359
+ A ++ + + G + V +++ L + + F G AA +F
Sbjct: 261 LALAFVLYAASFPSVMDSLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFA 320
Query: 360 TINRKPEIDAYDTKGKILDDIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVG 419
++ + E D +++D GD+E R+V F+YP R ++ I +G T ALVG
Sbjct: 321 ILDSEQEKD---EGKRVIDRATGDLEFRNVTFTYPGR-EVPALRNINLKIPAGKTVALVG 376
Query: 420 QSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDN 479
+SGSGKST+ SLI RFYD G +L+DG +L+E+ L +R ++ LVSQ LF ++ +N
Sbjct: 377 RSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANN 436
Query: 480 IAYGKDDATT-EEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAIL 538
IAY + + + E+I A +A A FI+K+ G+DT++GE+G LSGGQ+QRIAIARA+L
Sbjct: 437 IAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALL 496
Query: 539 KDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKI 598
+D IL+LDEATSALD ESE+ +Q ALD + NRT++++AHRLST+ AD I V+ G I
Sbjct: 497 RDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEQADEIVVVEDGII 556
Query: 599 VEKGTHSKLVEDPEGAYSQLIRLQ 622
VE+GTHS+L+ G Y+QL ++Q
Sbjct: 557 VERGTHSELLAQ-HGVYAQLHKMQ 579
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A Length = 582 | Back alignment and structure |
|---|
Score = 349 bits (898), Expect = e-107
Identities = 127/463 (27%), Positives = 221/463 (47%), Gaps = 12/463 (2%)
Query: 708 RRLAYLNKPEIPVILAGTIAAMANGVILPIYGLLISSVIETFF--KPPHELKKDSRFWAL 765
RRL P ++ IA + N L+ +++ F L
Sbjct: 14 RRLWPTIAPFKAGLIVAGIALILNAASDTFMLSLLKPLLDDGFGKTDRSVLLWMPLVVIG 73
Query: 766 IYLALGAGSFLLSPAQSYFFAVAGNKLIQRIRSMCFEKVIHMEVSWFDEPEHSSGAIGAR 825
+ + G S++ SY + K++ +R F ++ M V++FD+ S+G + +R
Sbjct: 74 LMILRGITSYI----SSYCISWVSGKVVMTMRRRLFGHMMGMPVAFFDK--QSTGTLLSR 127
Query: 826 LSADAASVRALVGDALARIVQNISTAAAGLIIAFTASWQLALIILVMLPLIGVSGYTQMK 885
++ D+ V + AL +V+ ++ I+ F SWQL++I++V+ P++ ++ K
Sbjct: 128 ITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQLSIILVVLAPIVSIAIRVVSK 187
Query: 886 FMKGFSADAKMKYEEASQVANDAVGSIRTVASFCAEEKVMQLYKKKCEAPMKTGIRQGMV 945
+ S + + + + A + + V F +E + + K G++
Sbjct: 188 RFRSISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNKMRLQGMKMVSA 247
Query: 946 SGGGFGASFFLLFAFYAASFYAGARLVEDGKATFSDVFKVFFSLTMTAIGISQSSSFSSD 1005
S + A YA + T + VF S+ + ++ ++
Sbjct: 248 SSISDPIIQLIASLALAFVLYAASFPSVMDSLTAGTITVVFSSMIALMRPLKSLTNVNAQ 307
Query: 1006 SNKAKSAAASIFAIIDRESKIDPSDESGTILEDVKGEIELHHVSFKYPSRPDVQVFRDLN 1065
+ +A ++FAI+D E + D E +++ G++E +V+F YP R +V R++N
Sbjct: 308 FQRGMAACQTLFAILDSEQEKD---EGKRVIDRATGDLEFRNVTFTYPGR-EVPALRNIN 363
Query: 1066 LKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMGLVS 1125
LKI AGKTVALVG SGSGKST+ SL+ RFYD D GHI +DG ++++ L LR Q+ LVS
Sbjct: 364 LKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRNQVALVS 423
Query: 1126 QEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSL 1168
Q LFNDT+ NIAY + + + +I+ A+ MA A FI +
Sbjct: 424 QNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKM 466
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} Length = 582 | Back alignment and structure |
|---|
Score = 508 bits (1310), Expect = e-167
Identities = 172/564 (30%), Positives = 294/564 (52%), Gaps = 11/564 (1%)
Query: 60 LMIIGSIGAIGNGLCLPLMTLLFGDLINTFGDNQNNSETVDKVSKVAVKFVYLGIGSGIA 119
+++ +I + N M L L++ N + + + + + L G++
Sbjct: 26 GLVVSTIALVINAAADTYMISLLKPLLDEGFGNAES----NFLRILPFMILGLMFVRGLS 81
Query: 120 SFLQVTCWMITGERQATRIRGLYLKTILRQDVAFFDNETNTGEVVGRMSGDTVLIQDAMG 179
F C ++R + V FFD E+ TG ++ R++ D+ + A
Sbjct: 82 GFASSYCLSWVSGNVVMQMRRRLFNHFMHMPVRFFDQES-TGGLLSRITYDSEQVAGATS 140
Query: 180 EKVGKFLQLMATFLGGFLIAFIKGWLLTLVMLSSIPLLAMSGGVMAIMISKMSSRGQGAY 239
+ ++ A+ +G + F W L+LV++ P++A + ++ K+S Q A
Sbjct: 141 RALVSIVREGASIIGLLTLMFWNSWQLSLVLIVVAPVVAFAISFVSKRFRKISRNMQTAM 200
Query: 240 AKAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYKSGVQEGLAAGIGLGMVMLIVF 299
S EQ + + V S+ G++ + K + + ++ A I ++ +I
Sbjct: 201 GHVTSSAEQMLKGHKVVLSYGGQEVERKRFDKVSNSMRQQTMKLVSAQSIADPVIQMIAS 260
Query: 300 CSYALSVWYGGKLILEEGYNGGQVVNVMVAVLTGSMSLGEASPCLSAFGAGQAAAFKMFE 359
+ ++ + G V A+ L + S F G AA +F
Sbjct: 261 LALFAVLFLASVDSIRAELTPGTFTVVFSAMFGLMRPLKALTSVTSEFQRGMAACQTLFG 320
Query: 360 TINRKPEIDAYDTKGKILDDIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVG 419
++ + E D + + G+++++DV F+Y + + S S SI G T ALVG
Sbjct: 321 LMDLETERD---NGKYEAERVNGEVDVKDVTFTYQGK-EKPALSHVSFSIPQGKTVALVG 376
Query: 420 QSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDN 479
+SGSGKST+ +L RFYD +G + +DG ++++++L +R+ LVSQ LF +I +N
Sbjct: 377 RSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKLTNLRRHFALVSQNVHLFNDTIANN 436
Query: 480 IAYGKD-DATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAIL 538
IAY + + T E+I A A+A +FI+ +PQG+DT++GE+GT LSGGQ+QR+AIARA+L
Sbjct: 437 IAYAAEGEYTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVAIARALL 496
Query: 539 KDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKI 598
+D +L+LDEATSALD ESE+ +Q ALD + N+T +++AHRLST+ AD I V+ G+I
Sbjct: 497 RDAPVLILDEATSALDTESERAIQAALDELQKNKTVLVIAHRLSTIEQADEILVVDEGEI 556
Query: 599 VEKGTHSKLVEDPEGAYSQLIRLQ 622
+E+G H+ L+ +GAY+QL R+Q
Sbjct: 557 IERGRHADLLAQ-DGAYAQLHRIQ 579
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} Length = 582 | Back alignment and structure |
|---|
Score = 342 bits (879), Expect = e-105
Identities = 115/465 (24%), Positives = 211/465 (45%), Gaps = 16/465 (3%)
Query: 708 RRLAYLNKPEIPVILAGTIAAMANGVILPIYGLLISSVIETFFKPPHELKKDSRFWALIY 767
+RL + ++ TIA + N L+ +++ F +S F ++
Sbjct: 14 KRLWTYIRLYKAGLVVSTIALVINAAADTYMISLLKPLLDEGF-----GNAESNFLRILP 68
Query: 768 LALGAGSFLLSPA----QSYFFAVAGNKLIQRIRSMCFEKVIHMEVSWFDEPEHSSGAIG 823
+ G + SY + ++ ++R F +HM V +FD+ S+G +
Sbjct: 69 FMI-LGLMFVRGLSGFASSYCLSWVSGNVVMQMRRRLFNHFMHMPVRFFDQ--ESTGGLL 125
Query: 824 ARLSADAASVRALVGDALARIVQNISTAAAGLIIAFTASWQLALIILVMLPLIGVSGYTQ 883
+R++ D+ V AL IV+ ++ L + F SWQL+L+++V+ P++ +
Sbjct: 126 SRITYDSEQVAGATSRALVSIVREGASIIGLLTLMFWNSWQLSLVLIVVAPVVAFAISFV 185
Query: 884 MKFMKGFSADAKMKYEEASQVANDAVGSIRTVASFCAEEKVMQLYKKKCEAPMKTGIRQG 943
K + S + + + A + + V S+ +E + + K + + ++
Sbjct: 186 SKRFRKISRNMQTAMGHVTSSAEQMLKGHKVVLSYGGQEVERKRFDKVSNSMRQQTMKLV 245
Query: 944 MVSGGGFGASFFLLFAFYAASFYAGARLVEDGKATFSDVFKVFFSLTMTAIGISQSSSFS 1003
+ A + + + T VF ++ + +S +
Sbjct: 246 SAQSIADPVIQMIASLALFAVLFLASVDSIRAELTPGTFTVVFSAMFGLMRPLKALTSVT 305
Query: 1004 SDSNKAKSAAASIFAIIDRESKIDPSDESGTILEDVKGEIELHHVSFKYPSRPDVQVFRD 1063
S+ + +A ++F ++D E++ D E V GE+++ V+F Y + +
Sbjct: 306 SEFQRGMAACQTLFGLMDLETERDNGKYE---AERVNGEVDVKDVTFTYQGK-EKPALSH 361
Query: 1064 LNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMGL 1123
++ I GKTVALVG SGSGKST+ +L RFYD D+G I LDG +++ +L LR+ L
Sbjct: 362 VSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKLTNLRRHFAL 421
Query: 1124 VSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSL 1168
VSQ LFNDTI NIAY G+ T +I+ A+ A+A +FI ++
Sbjct: 422 VSQNVHLFNDTIANNIAYAAEGEYTREQIEQAARQAHAMEFIENM 466
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A Length = 578 | Back alignment and structure |
|---|
Score = 492 bits (1268), Expect = e-161
Identities = 175/569 (30%), Positives = 264/569 (46%), Gaps = 13/569 (2%)
Query: 60 LMIIGSIGAIGNGLCLPLMTLLFGDLINTF---GDNQNNSETVDKVSKVAVKFVYLGIGS 116
+ I I L+ LL I+ + + + + I
Sbjct: 15 RIFATIIVGIIKFGIPMLIPLLIKYAIDGVINNHALTTDEKVHHLTIAIGIALFIFVIVR 74
Query: 117 GIASFLQVTCWM-ITGERQATRIRG-LYLKTILRQDVAFFDNETNTGEVVGRMSGDTVLI 174
F++ T + IR LY + F+ N G+V+ R+ D
Sbjct: 75 PPIEFIR-QYLAQWTSNKILYDIRKKLYNH-LQALSARFYAN-NQVGQVISRVINDVEQT 131
Query: 175 QDAMGEKVGKFLQLMATFLGGFLIAFIKGWLLTLVMLSSIPLLAMSGGVMAIMISKMSSR 234
+D + + T + I F LTL L P ++ V + K++
Sbjct: 132 KDFILTGLMNIWLDCITIIIALSIMFFLDVKLTLAALFIFPFYILTVYVFFGRLRKLTRE 191
Query: 235 GQGAYAKAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYKSGVQEGLAAGIGLGMV 294
A A+ + + + I V SF E N+ K ++ +
Sbjct: 192 RSQALAEVQGFLHERVQGISVVKSFAIEDNEAKNFDKKNTNFLTRALKHTRWNAYSFAAI 251
Query: 295 MLIVFCSYALSVWYGGKLILEEGYNGGQVVNVMVAVLTGSMSLGEASPCLSAFGAGQAAA 354
+ + + G L + G + + + L + A+
Sbjct: 252 NTVTDIGPIIVIGVGAYLAISGSITVGTLAAFVGYLELLFGPLRRLVASFTTLTQSFASM 311
Query: 355 FKMFETINRKPEIDAYDTKGKI-LDDIRGDIELRDVYFSYPARPNEQIFSGFSISISSGT 413
++F+ I+ +I + G ++ +G I++ V F Y I ++SI G
Sbjct: 312 DRVFQLIDEDYDIK--NGVGAQPIEIKQGRIDIDHVSFQYNDN-EAPILKDINLSIEKGE 368
Query: 414 TAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFT 473
T A VG SG GKST+I+LI RFYD +G++LIDG N+K+F +R +IGLV Q+ +LF+
Sbjct: 369 TVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFS 428
Query: 474 GSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAI 533
++K+NI G+ AT EE+ A ++ANA FI LPQG DT VGE G +LSGGQKQR++I
Sbjct: 429 DTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSI 488
Query: 534 ARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVI 593
AR L +P IL+LDEATSALD ESE ++QEALD + +RTT+IVAHRLST+ +AD I VI
Sbjct: 489 ARIFLNNPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLSTITHADKIVVI 548
Query: 594 HRGKIVEKGTHSKLVEDPEGAYSQLIRLQ 622
G IVE GTH +L+ +GAY L +Q
Sbjct: 549 ENGHIVETGTHRELIAK-QGAYEHLYSIQ 576
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A Length = 578 | Back alignment and structure |
|---|
Score = 326 bits (838), Expect = 3e-99
Identities = 115/468 (24%), Positives = 199/468 (42%), Gaps = 14/468 (2%)
Query: 708 RRLAYLNKPEIPVILAGTIAAMANGVILPIYGLLISSVIETFFKPPHELKKDSRFWALIY 767
+R KP I A I + I + LLI I+ + I
Sbjct: 3 KRYLQFVKPYKYRIFATIIVGIIKFGIPMLIPLLIKYAIDGVINNHALTTDEKVHHLTIA 62
Query: 768 LALG-AGSFLLSPA----QSYFFAVAGNKLIQRIRSMCFEKVIHMEVSWFDEPEHSSGAI 822
+ + ++ P + Y NK++ IR + + + ++ + G +
Sbjct: 63 IGIALFIFVIVRPPIEFIRQYLAQWTSNKILYDIRKKLYNHLQALSARFYAN--NQVGQV 120
Query: 823 GARLSADAASVRALVGDALARIVQNISTAAAGLIIAFTASWQLALIILVMLPLIGVSGYT 882
+R+ D + + L I + T L I F +L L L + P ++ Y
Sbjct: 121 ISRVINDVEQTKDFILTGLMNIWLDCITIIIALSIMFFLDVKLTLAALFIFPFYILTVYV 180
Query: 883 QMKFMKGFSADAKMKYEEASQVANDAVGSIRTVASFCAEEKVMQLYKKKCEAPMKTGIRQ 942
++ + + E ++ V I V SF E+ + + KK + ++
Sbjct: 181 FFGRLRKLTRERSQALAEVQGFLHERVQGISVVKSFAIEDNEAKNFDKKNTNFLTRALKH 240
Query: 943 GMVSGGGFGASFFLLFAFYAASFYAGARLVEDGKATFSDVFKVFFSLTMTAIG-ISQSSS 1001
+ F A + GA L G T + F G + + +
Sbjct: 241 TRWNAYSFAAINTVTDIGPIIVIGVGAYLAISGSITVGTLA-AFVGYLELLFGPLRRLVA 299
Query: 1002 FSSDSNKAKSAAASIFAIIDRESKIDPSDESGTI-LEDVKGEIELHHVSFKYPSRPDVQV 1060
+ ++ ++ +F +ID + I + G +E +G I++ HVSF+Y + +
Sbjct: 300 SFTTLTQSFASMDRVFQLIDEDYDIK--NGVGAQPIEIKQGRIDIDHVSFQYNDN-EAPI 356
Query: 1061 FRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQ 1120
+D+NL I G+TVA VG SG GKST+++L+ RFYD +G I +DG I+ LR Q
Sbjct: 357 LKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQ 416
Query: 1121 MGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSL 1168
+GLV Q+ +LF+DT++ NI G+ AT+ E+ A++MANAH FI +L
Sbjct: 417 IGLVQQDNILFSDTVKENILLGR-PTATDEEVVEAAKMANAHDFIMNL 463
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* Length = 271 | Back alignment and structure |
|---|
Score = 463 bits (1195), Expect = e-155
Identities = 101/268 (37%), Positives = 153/268 (57%), Gaps = 5/268 (1%)
Query: 367 IDAYDTKGKILDDIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKS 426
+ +++G ++ +DV F+YP PN Q+ G + ++ G ALVG +GSGKS
Sbjct: 1 MSPLS-GSLAPLNMKGLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKS 59
Query: 427 TVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGK-D 485
TV +L++ Y P G+VL+DG L ++ ++ ++ V QEP+LF S ++NIAYG
Sbjct: 60 TVAALLQNLYQPTGGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYGLTR 119
Query: 486 DATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILL 545
T EEI + A FI PQG DT VGE G QLSGGQ+Q +A+ARA+++ PR+L+
Sbjct: 120 TPTMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLI 179
Query: 546 LDEATSALDAESEKVVQEALDRIM--VNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGT 603
LD ATSALDA ++ VQ L +RT +++ +LS A I + G + E+GT
Sbjct: 180 LDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLSLAERAHHILFLKEGSVCEQGT 239
Query: 604 HSKLVEDPEGAYSQLIRLQEANKESEQT 631
H +L+E G Y ++ A ++
Sbjct: 240 HLQLME-RGGCYRSMVEALAAPSDAAAH 266
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* Length = 271 | Back alignment and structure |
|---|
Score = 265 bits (680), Expect = 4e-81
Identities = 58/145 (40%), Positives = 78/145 (53%), Gaps = 1/145 (0%)
Query: 1026 IDPSDESGTILEDVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKS 1085
+ P ++KG ++ VSF YP+ P+VQV + L + GK ALVG +GSGKS
Sbjct: 1 MSPLSG-SLAPLNMKGLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKS 59
Query: 1086 TVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKGG 1145
TV +LLQ Y P G + LDG + + +L Q+ V QEP+LF + R NIAYG
Sbjct: 60 TVAALLQNLYQPTGGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYGLTR 119
Query: 1146 DATEAEIQAASEMANAHKFICSLQQ 1170
T EI A + + AH FI Q
Sbjct: 120 TPTMEEITAVAMESGAHDFISGFPQ 144
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* Length = 247 | Back alignment and structure |
|---|
Score = 446 bits (1149), Expect = e-149
Identities = 116/244 (47%), Positives = 161/244 (65%), Gaps = 1/244 (0%)
Query: 379 DIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDP 438
DI R++ F Y I ++SI G +VG+SGSGKST+ LI+RFY P
Sbjct: 3 HHHHDITFRNIRFRYKPDS-PVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIP 61
Query: 439 QAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATEL 498
+ G+VLIDG +L W+R+++G+V Q+ VL SI DNI+ + E++ A +L
Sbjct: 62 ENGQVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKL 121
Query: 499 ANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESE 558
A A FI +L +G +T+VGE G LSGGQ+QRIAIARA++ +P+IL+ DEATSALD ESE
Sbjct: 122 AGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESE 181
Query: 559 KVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVEDPEGAYSQL 618
V+ + +I RT +I+AHRLSTV+NAD I V+ +GKIVE+G H +L+ +PE YS L
Sbjct: 182 HVIMRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYL 241
Query: 619 IRLQ 622
+LQ
Sbjct: 242 YQLQ 245
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* Length = 247 | Back alignment and structure |
|---|
Score = 224 bits (573), Expect = 9e-67
Identities = 46/134 (34%), Positives = 78/134 (58%), Gaps = 2/134 (1%)
Query: 1037 EDVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYD 1096
+I ++ F+Y V + ++NL I+ G+ + +VG SGSGKST+ L+QRFY
Sbjct: 2 HHHHHDITFRNIRFRYKPDSPV-ILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYI 60
Query: 1097 PDAGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAAS 1156
P+ G + +DG ++ WLR+Q+G+V Q+ VL N +I NI+ + ++ A+
Sbjct: 61 PENGQVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLAN-PGMSVEKVIYAA 119
Query: 1157 EMANAHKFICSLQQ 1170
++A AH FI L++
Sbjct: 120 KLAGAHDFISELRE 133
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 Length = 243 | Back alignment and structure |
|---|
Score = 416 bits (1071), Expect = e-137
Identities = 105/245 (42%), Positives = 156/245 (63%), Gaps = 4/245 (1%)
Query: 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 443
+ R V F+Y QI S + A G SG GKST+ SL+ERFY P AGE+
Sbjct: 2 LSARHVDFAYDDSE--QILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEI 59
Query: 444 LIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKD-DATTEEIRVATELANAA 502
IDG + L+ R +IG VSQ+ + G+I++N+ YG + D T E++ +LA A
Sbjct: 60 TIDGQPIDNISLENWRSQIGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFAR 119
Query: 503 KFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQ 562
F++ +P ++T VGE G ++SGGQ+QR+AIARA L++P+IL+LDEAT++LD+ESE +VQ
Sbjct: 120 SFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQ 179
Query: 563 EALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVEDPEGAYSQLIRLQ 622
+ALD +M RTT+++AHRLST+ +AD I I +G+I G H++LV Y++ + Q
Sbjct: 180 KALDSLMKGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVAT-HPLYAKYVSEQ 238
Query: 623 EANKE 627
+
Sbjct: 239 LTVGQ 243
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 Length = 243 | Back alignment and structure |
|---|
Score = 222 bits (568), Expect = 4e-66
Identities = 48/128 (37%), Positives = 72/128 (56%), Gaps = 2/128 (1%)
Query: 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHI 1102
+ HV F Y Q+ RD++ + + +A G SG GKST+ SLL+RFY P AG I
Sbjct: 2 LSARHVDFAYDDSE--QILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEI 59
Query: 1103 TLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAH 1162
T+DG I + L+ R Q+G VSQ+ + TIR N+ YG GD T+ ++ ++A A
Sbjct: 60 TIDGQPIDNISLENWRSQIGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFAR 119
Query: 1163 KFICSLQQ 1170
F+ ++
Sbjct: 120 SFVENMPD 127
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} Length = 260 | Back alignment and structure |
|---|
Score = 396 bits (1020), Expect = e-130
Identities = 116/261 (44%), Positives = 174/261 (66%), Gaps = 3/261 (1%)
Query: 367 IDAYDTKGKILDDIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKS 426
++++ +IE DV FSYP + N + + I SGTT ALVG +GSGKS
Sbjct: 2 LESFSLTSH-EKKFGVNIEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKS 60
Query: 427 TVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDD 486
T+ L+ RFYD + G++ I G N+ ++ IR IG+V Q+ +LF +IK NI YGK D
Sbjct: 61 TIAKLLYRFYDAE-GDIKIGGKNVNKYNRNSIRSIIGIVPQDTILFNETIKYNILYGKLD 119
Query: 487 ATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLL 546
AT EE+ AT+ A FI+ LP+ DT+VG G +LSGG++QRIAIAR +LKDP+I++
Sbjct: 120 ATDEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDPKIVIF 179
Query: 547 DEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSK 606
DEATS+LD+++E + Q+A++ + NRT +I+AHRLST+ +A+ I ++++GKIVEKGTH
Sbjct: 180 DEATSSLDSKTEYLFQKAVEDLRKNRTLIIIAHRLSTISSAESIILLNKGKIVEKGTHKD 239
Query: 607 LVEDPEGAYSQLIRLQEANKE 627
L++ G Y+++ +Q +
Sbjct: 240 LLKL-NGEYAEMWNMQSGGND 259
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} Length = 260 | Back alignment and structure |
|---|
Score = 209 bits (534), Expect = 3e-61
Identities = 53/143 (37%), Positives = 82/143 (57%), Gaps = 3/143 (2%)
Query: 1026 IDPSDESGTILEDVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKS 1085
++ + + IE V+F YP + + + + +N I +G T ALVG +GSGKS
Sbjct: 2 LESFSLTSH-EKKFGVNIEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKS 60
Query: 1086 TVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKGG 1145
T+ LL RFYD + G I + G + K +R +G+V Q+ +LFN+TI+ NI YGK
Sbjct: 61 TIAKLLYRFYDAE-GDIKIGGKNVNKYNRNSIRSIIGIVPQDTILFNETIKYNILYGK-L 118
Query: 1146 DATEAEIQAASEMANAHKFICSL 1168
DAT+ E+ A++ A + FI +L
Sbjct: 119 DATDEEVIKATKSAQLYDFIEAL 141
|
| >3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 598 | Back alignment and structure |
|---|
Score = 408 bits (1051), Expect = e-129
Identities = 165/571 (28%), Positives = 303/571 (53%), Gaps = 11/571 (1%)
Query: 60 LMIIGSIGAIGNGLCLPLMTLLFGDLINTFGDNQNNSETVDKVSKVAVKFVYLGIGSGIA 119
+I+ + + + L L G I+ + D + + + + + +
Sbjct: 38 TLIMVFVFVTVSSILGVLSPYLIGKTIDVVFVPRR----FDLLPRYMLILGTIYALTSLL 93
Query: 120 SFLQVTCWMITGERQATRIRGLYLKTILRQDVAFFDNETNTGEVVGRMSGDTVLIQDAMG 179
+LQ + + R+R + + R V FFD T G+++ R+ D I + +G
Sbjct: 94 FWLQGKIMLTLSQDVVFRLRKELFEKLQRVPVGFFDR-TPHGDIISRVINDVDNINNVLG 152
Query: 180 EKVGKFLQLMATFLGGFLIAFIKGWLLTLVMLSSIPLLAMSGGVMAIMISKMSSRGQGAY 239
+ +F + T G ++ F +L+LV LS +PL + +++ K Q
Sbjct: 153 NSIIQFFSGIVTLAGAVIMMFRVNVILSLVTLSIVPLTVLITQIVSSQTRKYFYENQRVL 212
Query: 240 AKAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYKSGVQEGLAAGIGLGMVMLIVF 299
+ ++E+ I + + FT E++ M + + + K G + + +G+ ++ ++
Sbjct: 213 GQLNGIIEEDISGLTVIKLFTREEKEMEKFDRVNESLRKVGTKAQIFSGVLPPLMNMVNN 272
Query: 300 CSYALSVWYGGKLILEEGYNGGQVVNVMVAVLTGSMSLGEASPCLSAFGAGQAAAFKMFE 359
+AL +GG L L++ G + + + L E S + A+A ++FE
Sbjct: 273 LGFALISGFGGWLALKDIITVGTIATFIGYSRQFTRPLNELSNQFNMIQMALASAERIFE 332
Query: 360 TINRKPEIDAYDTKGKILDDIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVG 419
++ + E D D L ++RG+IE ++V+FSY + + + I G ALVG
Sbjct: 333 ILDLEEEKD--DPDAVELREVRGEIEFKNVWFSY--DKKKPVLKDITFHIKPGQKVALVG 388
Query: 420 QSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDN 479
+GSGK+T+++L+ RFYD G++L+DGI++++ + +R IG+V Q+ +LF+ ++K+N
Sbjct: 389 PTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRKIKRSSLRSSIGIVLQDTILFSTTVKEN 448
Query: 480 IAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILK 539
+ YG AT EEI+ A +L ++ FI LP+G +T++ ++G LS GQ+Q +AI RA L
Sbjct: 449 LKYGNPGATDEEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLAITRAFLA 508
Query: 540 DPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIV 599
+P+IL+LDEATS +D ++EK +Q A+ ++M +T++I+AHRL+T++NAD+I V+ G+IV
Sbjct: 509 NPKILILDEATSNVDTKTEKSIQAAMWKLMEGKTSIIIAHRLNTIKNADLIIVLRDGEIV 568
Query: 600 EKGTHSKLVEDPEGAYSQLIRLQ-EANKESE 629
E G H +L++ G Y +L Q E E
Sbjct: 569 EMGKHDELIQK-RGFYYELFTSQYGLVVEKE 598
|
| >3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 598 | Back alignment and structure |
|---|
Score = 258 bits (662), Expect = 1e-74
Identities = 128/486 (26%), Positives = 224/486 (46%), Gaps = 24/486 (4%)
Query: 691 PAGPSQPTEEVAPEVPT-RRL-AYLN--KPEIPVILAGTIAAMANGVILPIYGLLISSVI 746
P GP + T RRL YL + ++ + GV+ P LI I
Sbjct: 8 PHGPILEKPALKNPTATLRRLLGYLRPHTFTLIMVFVFVTVSSILGVLSPY---LIGKTI 64
Query: 747 ETFFKPP--HELKKDSRFWALIYLALGAGSFLLSPAQSYFFAVAGNKLIQRIRSMCFEKV 804
+ F P L + IY +L Q ++ R+R FEK+
Sbjct: 65 DVVFVPRRFDLLPRYMLILGTIYALTSLLFWL----QGKIMLTLSQDVVFRLRKELFEKL 120
Query: 805 IHMEVSWFDEPEHSSGAIGARLSADAASVRALVGDALARIVQNISTAAAGLIIAFTASWQ 864
+ V +FD G I +R+ D ++ ++G+++ + I T A +I+ F +
Sbjct: 121 QRVPVGFFDR--TPHGDIISRVINDVDNINNVLGNSIIQFFSGIVTLAGAVIMMFRVNVI 178
Query: 865 LALIILVMLPL-IGVSGYTQMKFMKGFSADAKMKYEEASQVANDAVGSIRTVASFCAEEK 923
L+L+ L ++PL + ++ + K F + ++ + + + + + + F EEK
Sbjct: 179 LSLVTLSIVPLTVLITQIVSSQTRKYFYENQRVLGQLNGII-EEDISGLTVIKLFTREEK 237
Query: 924 VMQLYKKKCEAPMKTGIRQGMVSGGGFGASFFLLFAFYAASFYAGARLVEDGKATFSDVF 983
M+ + + E+ K G + + SG + +A G L T +
Sbjct: 238 EMEKFDRVNESLRKVGTKAQIFSGVLPPLMNMVNNLGFALISGFGGWLALKDIITVGTIA 297
Query: 984 KVFFSLTMTAIG-ISQSSSFSSDSNKAKSAAASIFAIIDRESKIDPSDESGTILEDVKGE 1042
F + +++ S+ + A ++A IF I+D E + D D L +V+GE
Sbjct: 298 -TFIGYSRQFTRPLNELSNQFNMIQMALASAERIFEILDLEEEKD--DPDAVELREVRGE 354
Query: 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHI 1102
IE +V F Y V +D+ I+ G+ VALVG +GSGK+T+V+LL RFYD D G I
Sbjct: 355 IEFKNVWFSY--DKKKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQI 412
Query: 1103 TLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAH 1162
+DG++I+K++ LR +G+V Q+ +LF+ T++ N+ YG AT+ EI+ A+++ ++
Sbjct: 413 LVDGIDIRKIKRSSLRSSIGIVLQDTILFSTTVKENLKYGN-PGATDEEIKEAAKLTHSD 471
Query: 1163 KFICSL 1168
FI L
Sbjct: 472 HFIKHL 477
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* Length = 306 | Back alignment and structure |
|---|
Score = 372 bits (958), Expect = e-120
Identities = 120/276 (43%), Positives = 169/276 (61%), Gaps = 6/276 (2%)
Query: 356 KMFETINRKPEIDAYDTKG-KILDDIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTT 414
MF+ + + E+ D G L +G IE +V+FSY + S ++ G T
Sbjct: 27 NMFDLLKEETEVK--DLPGAGPLRFQKGRIEFENVHFSY--ADGRETLQDVSFTVMPGQT 82
Query: 415 AALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTG 474
ALVG SG+GKST++ L+ RFYD +G + IDG ++ + +R IG+V Q+ VLF
Sbjct: 83 LALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQVTQASLRSHIGVVPQDTVLFND 142
Query: 475 SIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIA 534
+I DNI YG+ A +E+ A + A I P+G T VGE G +LSGG+KQR+AIA
Sbjct: 143 TIADNIRYGRVTAGNDEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSGGEKQRVAIA 202
Query: 535 RAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIH 594
R ILK P I+LLDEATSALD +E+ +Q +L ++ NRTT++VAHRLSTV NAD I VI
Sbjct: 203 RTILKAPGIILLDEATSALDTSNERAIQASLAKVCANRTTIVVAHRLSTVVNADQILVIK 262
Query: 595 RGKIVEKGTHSKLVEDPEGAYSQLIRLQEANKESEQ 630
G IVE+G H L+ G Y+ + +LQ+ +E+ +
Sbjct: 263 DGCIVERGRHEALLSR-GGVYADMWQLQQGQEETSE 297
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* Length = 306 | Back alignment and structure |
|---|
Score = 190 bits (485), Expect = 4e-54
Identities = 59/154 (38%), Positives = 90/154 (58%), Gaps = 6/154 (3%)
Query: 1016 IFAIIDRESKIDPSDESGTI-LEDVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTV 1074
+F ++ E+++ D G L KG IE +V F Y + +D++ + G+T+
Sbjct: 28 MFDLLKEETEV--KDLPGAGPLRFQKGRIEFENVHFSY--ADGRETLQDVSFTVMPGQTL 83
Query: 1075 ALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDT 1134
ALVG SG+GKST++ LL RFYD +G I +DG +I ++ LR +G+V Q+ VLFNDT
Sbjct: 84 ALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQVTQASLRSHIGVVPQDTVLFNDT 143
Query: 1135 IRANIAYGKGGDATEAEIQAASEMANAHKFICSL 1168
I NI YG+ A E++AA++ A H I +
Sbjct: 144 IADNIRYGR-VTAGNDEVEAAAQAAGIHDAIMAF 176
|
| >3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 587 | Back alignment and structure |
|---|
Score = 348 bits (895), Expect = e-107
Identities = 150/572 (26%), Positives = 269/572 (47%), Gaps = 26/572 (4%)
Query: 57 DTALMIIGSIGAIGNGLCLPLMTLLFGDLINTFGDNQNNSETVDKVSKVAVKFVYLGIGS 116
L + + + L P + D GD V K + + + +
Sbjct: 24 FAVLAPLFMVVEVICDLSQPTLLARIVDEGIARGD-------FSLVLKTGILMLIVALIG 76
Query: 117 GIASFLQVTCWMITGERQATRIRG-LYLKTILRQDVAFFD-NETNTGEVVGRMSGDTVLI 174
+ + +R L+ K + + N +T ++ R++ D +
Sbjct: 77 AVGGIGCTVFASYASQNFGADLRRDLFRKV---LSFSISNVNRFHTSSLITRLTNDVTQL 133
Query: 175 QDAMGEKVGKFLQLMA----TFLGGFLIAFIKGWLLTLVMLSSIPLLAMSGGVMAIMISK 230
Q+ V L+++ F+GG ++A L+ V++ IP + + + +
Sbjct: 134 QNL----VMMLLRIVVRAPLLFVGGIVMAVSINVKLSSVLIFLIPPIVLLFVWLTKKGNP 189
Query: 231 MSSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYKSGVQEGLAAGIG 290
+ + Q + + VV + + +R V +F E+ N++K + +S +
Sbjct: 190 LFRKIQESTDEVNRVVRENLLGVRVVRAFRREEYENENFRKANESLRRSIISAFSLIVFA 249
Query: 291 LGMVMLIVFCSYALSVWYGGKLILEEGYNGGQVVNVMVAVLTGSMSLGEASPCLSAFGAG 350
L + + IV +W+GG L+ G ++ ++ SL L+
Sbjct: 250 LPLFIFIVNMGMIAVLWFGGVLVRNNQMEIGSIMAYTNYLMQIMFSLMMIGNILNFIVRA 309
Query: 351 QAAAFKMFETINRKPEIDAYDTKGKILDDIRGDIELRDVYFSYPARPNEQIFSGFSISIS 410
A+A ++ E +N KP I L ++ G + +V F Y + + SG + S+
Sbjct: 310 SASAKRVLEVLNEKPAI-EEADNALALPNVEGSVSFENVEFRYFE-NTDPVLSGVNFSVK 367
Query: 411 SGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPV 470
G+ A++G++GSGKST+++LI R DP+ G V +D ++++ +L+ +R I V QE V
Sbjct: 368 PGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTVKLKDLRGHISAVPQETV 427
Query: 471 LFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQR 530
LF+G+IK+N+ +G++DAT +EI A ++A FI LP+G D+ V G SGGQKQR
Sbjct: 428 LFSGTIKENLKWGREDATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQR 487
Query: 531 IAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMI 590
++IARA++K P++L+LD+ TS++D +EK + + L R TT I+ ++ T AD I
Sbjct: 488 LSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYTKGCTTFIITQKIPTALLADKI 547
Query: 591 AVIHRGKIVEKGTHSKLVED----PEGAYSQL 618
V+H GK+ GTH +L+E E SQ
Sbjct: 548 LVLHEGKVAGFGTHKELLEHCKPYREIYESQF 579
|
| >3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 587 | Back alignment and structure |
|---|
Score = 214 bits (548), Expect = 2e-59
Identities = 95/413 (23%), Positives = 196/413 (47%), Gaps = 19/413 (4%)
Query: 763 WALIYLALGAGSFLLSPAQSYFFAVAGNKLIQRIRSMCFEKVIHMEVSWFDEPEHSSGAI 822
++ L + + + F + A +R F KV+ +S + + ++
Sbjct: 65 TGILMLIVALIGAVGGIGCTVFASYASQNFGADLRRDLFRKVLSFSISNVNR--FHTSSL 122
Query: 823 GARLSADAASVRALVGDALARIVQNISTAAAGLIIAFTASWQLALIILVMLPLIGVSGYT 882
RL+ D ++ LV L +V+ G+++A + + +L+ +++ ++P I +
Sbjct: 123 ITRLTNDVTQLQNLVMMLLRIVVRAPLLFVGGIVMAVSINVKLSSVLIFLIPPIVLLFVW 182
Query: 883 QMKFMKGFSADAKMKYEEASQVANDAVGSIRTVASFCAEEKVMQLYKKKCEAPMKTGIRQ 942
K + +E ++V + + +R V +F EE + ++K E+ ++ I
Sbjct: 183 LTKKGNPLFRKIQESTDEVNRVVRENLLGVRVVRAFRREEYENENFRKANESLRRSIISA 242
Query: 943 GMVSGGGFGASFFLLFAFYAASFYAGARLVEDGKATFSDV-------FKVFFSLTMTAIG 995
+ F++ A + G LV + + + ++ FSL M
Sbjct: 243 FSLIVFALPLFIFIVNMGMIAVLWFGGVLVRNNQMEIGSIMAYTNYLMQIMFSLMMIGNI 302
Query: 996 ISQSSSFSSDSNKAKSAAASIFAIIDRESKIDPSDESGTILEDVKGEIELHHVSFKYPSR 1055
++ +A ++A + +++ + I+ +D + L +V+G + +V F+Y
Sbjct: 303 LNFIV-------RASASAKRVLEVLNEKPAIEEADNALA-LPNVEGSVSFENVEFRYFE- 353
Query: 1056 PDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLK 1115
V +N ++ G VA++GE+GSGKST+++L+ R DP+ G + +D ++++ ++LK
Sbjct: 354 NTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTVKLK 413
Query: 1116 WLRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSL 1168
LR + V QE VLF+ TI+ N+ +G+ DAT+ EI A+++A H FI SL
Sbjct: 414 DLRGHISAVPQETVLFSGTIKENLKWGR-EDATDDEIVEAAKIAQIHDFIISL 465
|
| >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} Length = 390 | Back alignment and structure |
|---|
Score = 221 bits (564), Expect = 1e-63
Identities = 73/311 (23%), Positives = 132/311 (42%), Gaps = 6/311 (1%)
Query: 381 RGDIELRDVYFSYPARPN-EQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQ 439
G + ++D+ Y I S SIS G L+G++GSGKST++S R +
Sbjct: 17 GGQMTVKDLTAKY--TEGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNT- 73
Query: 440 AGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELA 499
GE+ IDG++ L+ RK G++ Q+ +F+G+ + N+ + +EI +
Sbjct: 74 EGEIQIDGVSWDSITLEQWRKAFGVIPQKVFIFSGTFRKNLD-PNAAHSDQEIWKVADEV 132
Query: 500 NAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEK 559
I++ P +D ++ + G LS G KQ + +AR++L +ILLLDE ++ LD + +
Sbjct: 133 GLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQ 192
Query: 560 VVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVEDPEGAYSQLI 619
+++ L + + T ++ R+ + D VI K+ + + +L P +
Sbjct: 193 IIRRTLKQAFADCTVILCEARIEAMLECDQFLVIEENKVRQYDSILELYHYPADRFVAGF 252
Query: 620 RLQEANKESEQTIDGQRKSEISMESLRHSSHRMSLRRSISRGSSIGNSSRHSISVSFGLP 679
+ L + + SR +G + I LP
Sbjct: 253 I-GSPKMNFLPVKVTATAIDQVQVELPMPNRQQVWLPVESRDVQVGANMSLGIRPEHLLP 311
Query: 680 SGQFADTALGE 690
S GE
Sbjct: 312 SDIADVILEGE 322
|
| >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} Length = 390 | Back alignment and structure |
|---|
Score = 100 bits (252), Expect = 9e-23
Identities = 32/130 (24%), Positives = 62/130 (47%), Gaps = 6/130 (4%)
Query: 1040 KGEIELHHVSFKYPSRPD-VQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPD 1098
G++ + ++ KY + +++ I G+ V L+G +GSGKST++S R + +
Sbjct: 17 GGQMTVKDLTAKY--TEGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNTE 74
Query: 1099 AGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEM 1158
G I +DGV + L+ R+ G++ Q+ +F+ T R N+ ++ EI ++
Sbjct: 75 -GEIQIDGVSWDSITLEQWRKAFGVIPQKVFIFSGTFRKNLD--PNAAHSDQEIWKVADE 131
Query: 1159 ANAHKFICSL 1168
I
Sbjct: 132 VGLRSVIEQF 141
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A Length = 229 | Back alignment and structure |
|---|
Score = 158 bits (402), Expect = 5e-44
Identities = 62/242 (25%), Positives = 117/242 (48%), Gaps = 21/242 (8%)
Query: 381 RGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQA 440
++ + +V + + + I G A+ G +G+GK++++ +I +P
Sbjct: 4 TTEVVMENVTAFW-EEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSE 62
Query: 441 GEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGK--DDATTEEIRVATEL 498
G++ G +I SQ + G+IK+NI +G D+ + A +L
Sbjct: 63 GKIKHSG-------------RISFCSQFSWIMPGTIKENIIFGVSYDEYRYRSVIKACQL 109
Query: 499 ANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESE 558
+ I K + + ++GE G LSGGQ+ RI++ARA+ KD + LLD LD +E
Sbjct: 110 E---EDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTE 166
Query: 559 K-VVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVEDPEGAYSQ 617
K + + + ++M N+T ++V ++ ++ AD I ++H G GT S+L + +S
Sbjct: 167 KEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQNL-QPDFSS 225
Query: 618 LI 619
+
Sbjct: 226 KL 227
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A Length = 229 | Back alignment and structure |
|---|
Score = 70.3 bits (173), Expect = 2e-13
Identities = 24/104 (23%), Positives = 48/104 (46%), Gaps = 14/104 (13%)
Query: 1040 KGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDA 1099
E+ + +V+ + V +D+N KI G+ +A+ G +G+GK++++ ++ +P
Sbjct: 4 TTEVVMENVTAFW-EEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSE 62
Query: 1100 GHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYGK 1143
G I G ++ SQ + TI+ NI +G
Sbjct: 63 GKIKHSG-------------RISFCSQFSWIMPGTIKENIIFGV 93
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} Length = 237 | Back alignment and structure |
|---|
Score = 154 bits (392), Expect = 1e-42
Identities = 73/254 (28%), Positives = 129/254 (50%), Gaps = 23/254 (9%)
Query: 382 GDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAG 441
I +R+ F++ AR + +G + SI G A+VGQ G GKS+++S + D G
Sbjct: 2 NSITVRNATFTW-ARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEG 60
Query: 442 EVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGK--DDATTEEIRVATELA 499
V I G + V Q+ + S+++NI +G ++ + A L
Sbjct: 61 HVAIKG-------------SVAYVPQQAWIQNDSLRENILFGCQLEEPYYRSVIQACALL 107
Query: 500 NAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAE-SE 558
++ LP G T +GE G LSGGQKQR+++ARA+ + I L D+ SA+DA +
Sbjct: 108 ---PDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGK 164
Query: 559 KVVQEALDR--IMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVEDPEGAYS 616
+ + + ++ N+T ++V H +S + D+I V+ GKI E G++ +L+ +GA++
Sbjct: 165 HIFENVIGPKGMLKNKTRILVTHSMSYLPQVDVIIVMSGGKISEMGSYQELLAR-DGAFA 223
Query: 617 QLIRLQEANKESEQ 630
+ +R ++
Sbjct: 224 EFLRTYASHHHHHH 237
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} Length = 237 | Back alignment and structure |
|---|
Score = 65.6 bits (161), Expect = 7e-12
Identities = 28/103 (27%), Positives = 47/103 (45%), Gaps = 14/103 (13%)
Query: 1041 GEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAG 1100
I + + +F + +R D + I G VA+VG+ G GKS+++S L D G
Sbjct: 2 NSITVRNATFTW-ARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEG 60
Query: 1101 HITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYGK 1143
H+ + G + V Q+ + ND++R NI +G
Sbjct: 61 HVAIKG-------------SVAYVPQQAWIQNDSLRENILFGC 90
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* Length = 290 | Back alignment and structure |
|---|
Score = 155 bits (394), Expect = 3e-42
Identities = 68/300 (22%), Positives = 128/300 (42%), Gaps = 30/300 (10%)
Query: 353 AAFKMFETINRKPEIDAYDTKGKILDDIRGDIELRDVYFSYPARPNEQIFSGFSISISSG 412
E E + + + + + + + I G
Sbjct: 10 VTAFWEEGFGELFEKAKQNNNNRKTSNGDDSLSFSNFSLLGTP-----VLKDINFKIERG 64
Query: 413 TTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLF 472
A+ G +G+GK++++ +I +P G++ G +I SQ +
Sbjct: 65 QLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG-------------RISFCSQNSWIM 111
Query: 473 TGSIKDNIAYGK--DDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQR 530
G+IK+NI G D+ + A +L + I K + + ++GE G LSGGQ+ R
Sbjct: 112 PGTIKENI-IGVSYDEYRYRSVIKACQLE---EDISKFAEKDNIVLGEGGITLSGGQRAR 167
Query: 531 IAIARAILKDPRILLLDEATSALDAESEKVV-QEALDRIMVNRTTVIVAHRLSTVRNADM 589
I++ARA+ KD + LLD LD +EK + + + ++M N+T ++V ++ ++ AD
Sbjct: 168 ISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADK 227
Query: 590 IAVIHRGKIVEKGTHSKLVEDPEGAYSQLIRLQEANKESEQTIDGQRKSEISMESLRHSS 649
I ++H G GT S+L +S + ++ + +R++ I E+L S
Sbjct: 228 ILILHEGSSYFYGTFSELQNL-RPDFSSKLMGCDSFDQFSA----ERRNSILTETLHRFS 282
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* Length = 290 | Back alignment and structure |
|---|
Score = 63.9 bits (156), Expect = 5e-11
Identities = 26/118 (22%), Positives = 50/118 (42%), Gaps = 13/118 (11%)
Query: 1022 RESKIDPSDESGTILEDVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESG 1081
E + +++ + K +SF S V +D+N KI G+ +A+ G +G
Sbjct: 15 EEGFGELFEKAKQNNNNRKTSNGDDSLSFSNFSLLGTPVLKDINFKIERGQLLAVAGSTG 74
Query: 1082 SGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANI 1139
+GK++++ ++ +P G I G ++ SQ + TI+ NI
Sbjct: 75 AGKTSLLMMIMGELEPSEGKIKHSG-------------RISFCSQNSWIMPGTIKENI 119
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} Length = 275 | Back alignment and structure |
|---|
Score = 154 bits (391), Expect = 6e-42
Identities = 57/242 (23%), Positives = 113/242 (46%), Gaps = 26/242 (10%)
Query: 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 443
+++ ++ ++Y G +++I G A++G +G GKST+ P +G +
Sbjct: 8 LKVEELNYNYS--DGTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRI 65
Query: 444 LIDG--INLKEFQLQWIRKKIGLVSQEPV--LFTGSIKDNIAYG------KDDATTEEIR 493
L D I+ + +R+ IG+V Q+P LF+ S+ ++++G +D + +
Sbjct: 66 LFDNKPIDYSRKGIMKLRESIGIVFQDPDNQLFSASVYQDVSFGAVNMKLPEDEIRKRVD 125
Query: 494 VATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSAL 553
A + DK LS GQK+R+AIA ++ +P++L+LDE T+ L
Sbjct: 126 NALKRTGIEHLKDKPTH-----------CLSFGQKKRVAIAGVLVMEPKVLILDEPTAGL 174
Query: 554 DAESEKVVQEALDRIM--VNRTTVIVAHRLSTV-RNADMIAVIHRGKIVEKGTHSKLVED 610
D + + L + + T +I H + V D + V+ G+++ +G ++ +
Sbjct: 175 DPMGVSEIMKLLVEMQKELGITIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFAE 234
Query: 611 PE 612
E
Sbjct: 235 KE 236
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} Length = 275 | Back alignment and structure |
|---|
Score = 88.8 bits (221), Expect = 2e-19
Identities = 25/104 (24%), Positives = 54/104 (51%), Gaps = 6/104 (5%)
Query: 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHI 1102
+++ +++ Y + +N+ I+ G+ A++G +G GKST+ P +G I
Sbjct: 8 LKVEELNYNYS--DGTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRI 65
Query: 1103 TLDGVEIQ--KLQLKWLRQQMGLVSQEPV--LFNDTIRANIAYG 1142
D I + + LR+ +G+V Q+P LF+ ++ ++++G
Sbjct: 66 LFDNKPIDYSRKGIMKLRESIGIVFQDPDNQLFSASVYQDVSFG 109
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} Length = 263 | Back alignment and structure |
|---|
Score = 149 bits (377), Expect = 3e-40
Identities = 45/268 (16%), Positives = 104/268 (38%), Gaps = 30/268 (11%)
Query: 384 IELRDVYFSYPARPNE-QIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGE 442
I+L++V + + E ++ ++ G ++G +GSGK+T++ I P +G
Sbjct: 2 IQLKNVGITLSGKGYERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-PYSGN 59
Query: 443 VLIDGINLKEFQLQWIRKKIGLVSQEPVLFTG--SIKDNIAYGKD--DATTEEIRVATEL 498
+ I+G+ +++ IR I + P + ++ D + ++ + +
Sbjct: 60 IFINGMEVRK-----IRNYIRYSTNLPEAYEIGVTVNDIVYLYEELKGLDRDLFLEMLKA 114
Query: 499 AN-AAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAES 557
+ + + +LS GQ + + A+ P I+ LDE +DA
Sbjct: 115 LKLGEEILRRKL-----------YKLSAGQSVLVRTSLALASQPEIVGLDEPFENVDAAR 163
Query: 558 EKVVQEALDRIMVNRTTVIVAHRLSTV-RNADMIAVIHRGKIVEK-GTHSKLVEDP--EG 613
V+ + + ++V H L + + A G ++ + S+L+E EG
Sbjct: 164 RHVISRYIKEY--GKEGILVTHELDMLNLYKEYKAYFLVGNRLQGPISVSELLESSIVEG 221
Query: 614 AYSQLIRLQEANKESEQTIDGQRKSEIS 641
+ + + + + + G +
Sbjct: 222 ERNDALLVLDIMDKKVSIVKGDLGMKFG 249
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} Length = 263 | Back alignment and structure |
|---|
Score = 78.9 bits (195), Expect = 3e-16
Identities = 22/103 (21%), Positives = 51/103 (49%), Gaps = 10/103 (9%)
Query: 1043 IELHHVSFKYPSRP-DVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGH 1101
I+L +V + + ++NL++ G+ V ++G +GSGK+T++ + P +G+
Sbjct: 2 IQLKNVGITLSGKGYERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-PYSGN 59
Query: 1102 ITLDGVEIQKLQLKWLRQQMGLVSQEPVLF--NDTIRANIAYG 1142
I ++G+E++K +R + + P + T+ +
Sbjct: 60 IFINGMEVRK-----IRNYIRYSTNLPEAYEIGVTVNDIVYLY 97
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} Length = 266 | Back alignment and structure |
|---|
Score = 148 bits (376), Expect = 5e-40
Identities = 71/276 (25%), Positives = 127/276 (46%), Gaps = 31/276 (11%)
Query: 383 DIELRDVYFSYPAR-PNE-QIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQA 440
IE+ +V + P E + S+ I+ G + G +GSGKST++ ++ +P +
Sbjct: 2 RIEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTS 61
Query: 441 GEVLIDGINLKEFQLQWIRKKIGLVSQEPV--LFTGSIKDNIAYG-KDDATTEEI--RVA 495
G+VL DG K IR+ IG+ Q P F + D +A+ K+ + V
Sbjct: 62 GDVLYDGERKK---GYEIRRNIGIAFQYPEDQFFAERVFDEVAFAVKNFYPDRDPVPLVK 118
Query: 496 TELA----NAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATS 551
+ + F D++P LSGG+K+R+AIA I+ +P IL+LDE
Sbjct: 119 KAMEFVGLDFDSFKDRVPF-----------FLSGGEKRRVAIASVIVHEPDILILDEPLV 167
Query: 552 ALDAESEKVVQEALDRI-MVNRTTVIVAHRLSTV-RNADMIAVIHRGKIVEKGTHSKLVE 609
LD E + + +++ + +T ++++H + TV + D + V+ +GK V GT + +E
Sbjct: 168 GLDREGKTDLLRIVEKWKTLGKTVILISHDIETVINHVDRVVVLEKGKKVFDGTRMEFLE 227
Query: 610 DPEGAYSQLIRLQEANKESEQTIDGQRKSEISMESL 645
+ + L + G+ +S + L
Sbjct: 228 KYDPRFFTSKMLVMR----RLVLKGEDPFSMSDDEL 259
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} Length = 266 | Back alignment and structure |
|---|
Score = 84.2 bits (209), Expect = 6e-18
Identities = 24/104 (23%), Positives = 54/104 (51%), Gaps = 7/104 (6%)
Query: 1043 IELHHVSFKYPSRP--DVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAG 1100
IE+ +VS + + + +++L I G+ + + G +GSGKST++ ++ +P +G
Sbjct: 3 IEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSG 62
Query: 1101 HITLDGVEIQKLQLKWLRQQMGLVSQEPV--LFNDTIRANIAYG 1142
+ DG ++ + +R+ +G+ Q P F + + +A+
Sbjct: 63 DVLYDG---ERKKGYEIRRNIGIAFQYPEDQFFAERVFDEVAFA 103
|
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C Length = 366 | Back alignment and structure |
|---|
Score = 147 bits (372), Expect = 2e-38
Identities = 75/250 (30%), Positives = 124/250 (49%), Gaps = 39/250 (15%)
Query: 384 IELRDVYFSYPARPNE-QIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGE 442
I+L ++ + Q + S+ + +G ++G SG+GKST+I + P G
Sbjct: 25 IKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGS 84
Query: 443 VLIDGIN---LKEFQLQWIRKKIGLVSQEPVLFTG-SIKDNIAY-----GKDDATTEEIR 493
VL+DG L E +L R++IG++ Q L + ++ N+A + R
Sbjct: 85 VLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKR-R 143
Query: 494 VATELANAAKFIDKLPQGIDTLVG------EHGTQLSGGQKQRIAIARAILKDPRILLLD 547
V L+ LVG + + LSGGQKQR+AIARA+ +P++LL D
Sbjct: 144 VTELLS---------------LVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCD 188
Query: 548 EATSALDAESEKVVQEALDRIMVNR----TTVIVAHRLSTVRN-ADMIAVIHRGKIVEKG 602
+ATSALD + + + E L I NR T +++ H + V+ D +AVI G+++E+
Sbjct: 189 QATSALDPATTRSILELLKDI--NRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQD 246
Query: 603 THSKLVEDPE 612
T S++ P+
Sbjct: 247 TVSEVFSHPK 256
|
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C Length = 366 | Back alignment and structure |
|---|
Score = 73.9 bits (182), Expect = 6e-14
Identities = 29/107 (27%), Positives = 56/107 (52%), Gaps = 11/107 (10%)
Query: 1043 IELHHVSFKYPSR-PDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGH 1101
I+L +++ + +Q +++L + AG+ ++G SG+GKST++ + P G
Sbjct: 25 IKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGS 84
Query: 1102 ITLDGVEIQKL---QLKWLRQQMGLVSQEPVLFN----DTIRANIAY 1141
+ +DG E+ L +L R+Q+G++ Q FN T+ N+A
Sbjct: 85 VLVDGQELTTLSESELTKARRQIGMIFQH---FNLLSSRTVFGNVAL 128
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} Length = 279 | Back alignment and structure |
|---|
Score = 143 bits (363), Expect = 3e-38
Identities = 53/260 (20%), Positives = 109/260 (41%), Gaps = 29/260 (11%)
Query: 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 443
I+L + + I S I+ G L G +G+GK+T+++++ + +G V
Sbjct: 22 IQLDQIGRMKQGKT---ILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTV 78
Query: 444 LIDGINL--KEFQLQWIRKKIGLVSQE---PVLFTGSIKDNIAYGKDDA-------TTEE 491
+ G + + +R+ IG VS + D + G + E
Sbjct: 79 NLFGKMPGKVGYSAETVRQHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEI 138
Query: 492 IRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATS 551
A +L + + G+ ++ LS G+KQR+ IARA++ P++L+LDE +
Sbjct: 139 RNEAHQL------LKLV--GMSAKAQQYIGYLSTGEKQRVMIARALMGQPQVLILDEPAA 190
Query: 552 ALDAESEKVVQEALDRIMVNRTT---VIVAHRLSTVRNA-DMIAVIHRGKIVEKGTHSKL 607
LD + + + LD + + T + V H + + I ++ G+ +++G +
Sbjct: 191 GLDFIARESLLSILDSLSDSYPTLAMIYVTHFIEEITANFSKILLLKDGQSIQQGAVEDI 250
Query: 608 VEDP--EGAYSQLIRLQEAN 625
+ + + + +Q N
Sbjct: 251 LTSENMSRFFQKNVAVQRWN 270
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} Length = 279 | Back alignment and structure |
|---|
Score = 74.6 bits (184), Expect = 2e-14
Identities = 24/127 (18%), Positives = 53/127 (41%), Gaps = 14/127 (11%)
Query: 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHI 1102
I+L + + + + ++ +I G L G +G+GK+T++++L + +G +
Sbjct: 22 IQLDQIGRMKQGKT---ILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTV 78
Query: 1103 TLDGVEIQKL--QLKWLRQQMGLVSQE---PVLFNDTIRANI---AYGKGG---DATEAE 1151
L G K+ + +RQ +G VS + + + A+ G D +
Sbjct: 79 NLFGKMPGKVGYSAETVRQHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEI 138
Query: 1152 IQAASEM 1158
A ++
Sbjct: 139 RNEAHQL 145
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 137 bits (346), Expect = 2e-33
Identities = 45/216 (20%), Positives = 80/216 (37%), Gaps = 28/216 (12%)
Query: 390 YFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGIN 449
Y S + + + S ++G++G+GK+T+I L+ P G+ +
Sbjct: 356 YPSLKKTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQDIPKL-- 413
Query: 450 LKEFQLQWIRKKIGLVSQEPV--LFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDK 507
+ +KI V LF I+ + ++ + + ID+
Sbjct: 414 ----NVSMKPQKIAPKFPGTVRQLFFKKIRGQF---LNPQFQTDVVKPLRIDD---IIDQ 463
Query: 508 LPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDR 567
Q LSGG+ QR+AI A+ I L+DE ++ LD+E + + + R
Sbjct: 464 EVQ-----------HLSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRR 512
Query: 568 IM--VNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVE 600
+ +T IV H AD + V
Sbjct: 513 FILHNKKTAFIVEHDFIMATYLADKVIVFEGIPSKN 548
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 119 bits (300), Expect = 9e-28
Identities = 45/234 (19%), Positives = 86/234 (36%), Gaps = 25/234 (10%)
Query: 383 DIELRDVYFSYPARPNEQIFSGF-SISISSGTTAALVGQSGSGKSTVISLI--------E 433
V Y A F + G LVG +G GKST + ++
Sbjct: 77 TNLEAHVTHRYSANS----FKLHRLPTPRPGQVLGLVGTNGIGKSTALKILAGKQKPNLG 132
Query: 434 RFYDPQAGEVLIDGINLKEFQ---LQWIRKKIGLVSQEPV--LFTGSIKDNIAYGKDDAT 488
RF DP + +I E Q + + I + + +IK + +
Sbjct: 133 RFDDPPEWQEIIKYFRGSELQNYFTKMLEDDIKAIIKPQYVDNIPRAIKGPVQKVGELLK 192
Query: 489 TEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDE 548
+ ++ K + ++ ++ +LSGG+ QR AI + +++ + + DE
Sbjct: 193 LRMEKSPEDVKRYIKILQ-----LENVLKRDIEKLSGGELQRFAIGMSCVQEADVYMFDE 247
Query: 549 ATSALDAESEKVVQEALDRIMVNRTTVIVA-HRLSTVRN-ADMIAVIHRGKIVE 600
+S LD + + + ++ VI H LS + +D + +I+ V
Sbjct: 248 PSSYLDVKQRLNAAQIIRSLLAPTKYVICVEHDLSVLDYLSDFVCIIYGVPSVY 301
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 73.1 bits (180), Expect = 3e-13
Identities = 25/122 (20%), Positives = 44/122 (36%), Gaps = 10/122 (8%)
Query: 1020 IDRESKIDPSDESGTILEDVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGE 1079
E+ ++ L++ + S K V + + + ++GE
Sbjct: 329 FRTEALQFRIADATEDLQNDSASRAFSYPSLKK--TQGDFVLNVEEGEFSDSEILVMMGE 386
Query: 1080 SGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMGLVSQEPV--LFNDTIRA 1137
+G+GK+T++ LL PD G I KL + Q++ V LF IR
Sbjct: 387 NGTGKTTLIKLLAGALKPDEGQD------IPKLNVSMKPQKIAPKFPGTVRQLFFKKIRG 440
Query: 1138 NI 1139
Sbjct: 441 QF 442
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 61.6 bits (150), Expect = 1e-09
Identities = 22/104 (21%), Positives = 36/104 (34%), Gaps = 14/104 (13%)
Query: 1042 EIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGH 1101
HV+ +Y + R G+ + LVG +G GKST + +L P+ G
Sbjct: 77 TNLEAHVTHRYSANSFK---LHRLPTPRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGR 133
Query: 1102 IT-----------LDGVEIQKLQLKWLRQQMGLVSQEPVLFNDT 1134
G E+Q K L + + + + N
Sbjct: 134 FDDPPEWQEIIKYFRGSELQNYFTKMLEDDIKAIIKPQYVDNIP 177
|
| >2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* Length = 263 | Back alignment and structure |
|---|
Score = 127 bits (322), Expect = 7e-33
Identities = 77/246 (31%), Positives = 123/246 (50%), Gaps = 36/246 (14%)
Query: 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 443
I++ + S+ + ++ G ++ I G ++G SGSGKST + + D GE+
Sbjct: 25 IDVHQLKKSFG---SLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEI 81
Query: 444 LIDGINL--KEFQLQWIRKKIGLVSQEPVLFTG-SIKDNIAYG--------KDDATTEEI 492
+IDGINL K+ L +R+++G+V Q LF ++ +NI ++ A
Sbjct: 82 IIDGINLKAKDTNLNKVREEVGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAE---- 137
Query: 493 RVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSA 552
A A + +DK+ G+ + LSGGQ QR+AIARA+ +P+I+L DE TSA
Sbjct: 138 ------AKAMELLDKV--GLKDKAHAYPDSLSGGQAQRVAIARALAMEPKIMLFDEPTSA 189
Query: 553 LDAESEKVVQEALDRIMVN-----RTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSK 606
LD E +V E L +M T V+V H + R D + + G I+E+G
Sbjct: 190 LDPE---MVGEVLS-VMKQLANEGMTMVVVTHEMGFAREVGDRVLFMDGGYIIEEGKPED 245
Query: 607 LVEDPE 612
L + P+
Sbjct: 246 LFDRPQ 251
|
| >2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* Length = 263 | Back alignment and structure |
|---|
Score = 69.9 bits (172), Expect = 3e-13
Identities = 36/119 (30%), Positives = 63/119 (52%), Gaps = 10/119 (8%)
Query: 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHI 1102
I++H + + ++V + +N+ IR G+ V ++G SGSGKST + L D D G I
Sbjct: 25 IDVHQLKKSFG---SLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEI 81
Query: 1103 TLDGVEI--QKLQLKWLRQQMGLVSQEPVLF-NDTIRANIAYG----KGGDATEAEIQA 1154
+DG+ + + L +R+++G+V Q LF + T+ NI + +AE +A
Sbjct: 82 IIDGINLKAKDTNLNKVREEVGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKA 140
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron transport, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} Length = 359 | Back alignment and structure |
|---|
Score = 128 bits (324), Expect = 3e-32
Identities = 69/237 (29%), Positives = 117/237 (49%), Gaps = 36/237 (15%)
Query: 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 443
+ + + S+ P + + S+S+ G ++G SG GK+T++ + F P +GE+
Sbjct: 5 LHIGHLSKSFQNTP---VLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEI 61
Query: 444 LIDG--INLKEFQLQWIRKKIGLVSQEPVLF---TGSIKDNIAYG--KDDATTEEI--RV 494
+ G I K L +++G + QE VLF T + NIAYG T + R+
Sbjct: 62 SLSGKTIFSKNTNLPVRERRLGYLVQEGVLFPHLT--VYRNIAYGLGNGKGRTAQERQRI 119
Query: 495 AT--ELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSA 552
EL ++ + P +LSGGQ+QR A+ARA+ DP ++LLDE SA
Sbjct: 120 EAMLELTGISELAGRYPH-----------ELSGGQQQRAALARALAPDPELILLDEPFSA 168
Query: 553 LDAESEKVVQEALDRIM--VNRTTVIVAH----RLSTVRNADMIAVIHRGKIVEKGT 603
LD + + ++E + + ++ V V+H L AD IAV+ +G+I++ +
Sbjct: 169 LDEQLRRQIREDMIAALRANGKSAVFVSHDREEALQY---ADRIAVMKQGRILQTAS 222
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron transport, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} Length = 359 | Back alignment and structure |
|---|
Score = 73.0 bits (180), Expect = 1e-13
Identities = 37/122 (30%), Positives = 63/122 (51%), Gaps = 10/122 (8%)
Query: 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHI 1102
+ + H+S + + V D++L + G+ + ++G SG GK+T++ L F PD+G I
Sbjct: 5 LHIGHLSKSFQ---NTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEI 61
Query: 1103 TLDGVEIQKLQLKWL---RQQMGLVSQEPVLF-NDTIRANIAYG-KGGDATEAEIQA-AS 1156
+L G I + L +++G + QE VLF + T+ NIAYG G A+ +
Sbjct: 62 SLSGKTIFS-KNTNLPVRERRLGYLVQEGVLFPHLTVYRNIAYGLGNGKGRTAQERQRIE 120
Query: 1157 EM 1158
M
Sbjct: 121 AM 122
|
| >1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 Length = 262 | Back alignment and structure |
|---|
Score = 125 bits (317), Expect = 4e-32
Identities = 70/261 (26%), Positives = 121/261 (46%), Gaps = 54/261 (20%)
Query: 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 443
+ + D++ Y ++ G S+ +G +++G SGSGKST + I P G +
Sbjct: 7 LHVIDLHKRYGGH---EVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAI 63
Query: 444 LIDGINL-------------KEFQLQWIRKKIGLVSQEPVLFTG-SIKDNIAYG------ 483
+++G N+ + QL+ +R ++ +V Q L++ ++ +N+
Sbjct: 64 IVNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLG 123
Query: 484 --KDDATTEEIRVATELAN----AAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAI 537
K DA A + + K P LSGGQ+QR++IARA+
Sbjct: 124 LSKHDA----RERALKYLAKVGIDERAQGKYP-----------VHLSGGQQQRVSIARAL 168
Query: 538 LKDPRILLLDEATSALDAESEKVVQEALDRIMVN-----RTTVIVAHRLSTVRN-ADMIA 591
+P +LL DE TSALD E +V E L IM +T V+V H + R+ + +
Sbjct: 169 AMEPDVLLFDEPTSALDPE---LVGEVLR-IMQQLAEEGKTMVVVTHEMGFARHVSSHVI 224
Query: 592 VIHRGKIVEKGTHSKLVEDPE 612
+H+GKI E+G ++ +P+
Sbjct: 225 FLHQGKIEEEGDPEQVFGNPQ 245
|
| >1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 Length = 262 | Back alignment and structure |
|---|
Score = 64.5 bits (158), Expect = 2e-11
Identities = 31/116 (26%), Positives = 54/116 (46%), Gaps = 18/116 (15%)
Query: 1057 DVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEI------- 1109
+V + ++L+ RAG ++++G SGSGKST + + P G I ++G I
Sbjct: 18 GHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKD 77
Query: 1110 ------QKLQLKWLRQQMGLVSQEPVLF-NDTIRANIAYG----KGGDATEAEIQA 1154
K QL+ LR ++ +V Q L+ + T+ N+ G +A +A
Sbjct: 78 GQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERA 133
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 123 bits (312), Expect = 8e-32
Identities = 68/199 (34%), Positives = 102/199 (51%), Gaps = 27/199 (13%)
Query: 416 ALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTG- 474
L+G +G+GKS + LI P GEV ++G ++ + R+ IG V Q+ LF
Sbjct: 28 VLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPE--RRGIGFVPQDYALFPHL 85
Query: 475 SIKDNIAYGKDDATTEEI--RV--ATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQR 530
S+ NIAYG + E RV E A +D+ P +LSGG++QR
Sbjct: 86 SVYRNIAYGLRNVERVERDRRVREMAEKLGIAHLLDRKPA-----------RLSGGERQR 134
Query: 531 IAIARAILKDPRILLLDEATSALDAESEKVVQEALDRI--MVNRTTVIVAH----RLSTV 584
+A+ARA++ PR+LLLDE SA+D +++ V+ E L + + + V H
Sbjct: 135 VALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAML- 193
Query: 585 RNADMIAVIHRGKIVEKGT 603
AD +AV+ G+IVEKG
Sbjct: 194 --ADEVAVMLNGRIVEKGK 210
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 55.2 bits (134), Expect = 2e-08
Identities = 25/81 (30%), Positives = 45/81 (55%), Gaps = 4/81 (4%)
Query: 1063 DLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMG 1122
+++ ++ L+G +G+GKS + L+ PD G + L+G +I L + R+ +G
Sbjct: 17 NVDFEM-GRDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPE--RRGIG 73
Query: 1123 LVSQEPVLF-NDTIRANIAYG 1142
V Q+ LF + ++ NIAYG
Sbjct: 74 FVPQDYALFPHLSVYRNIAYG 94
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 128 bits (325), Expect = 3e-31
Identities = 45/228 (19%), Positives = 88/228 (38%), Gaps = 23/228 (10%)
Query: 379 DIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDP 438
D+ D++ + + + + + G ++G +G GK+T ++
Sbjct: 261 DLSKDLKTKMKWTKIIKKLGDFQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITA 320
Query: 439 QAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATEL 498
G V + + K + G+++ + DA + E+
Sbjct: 321 DEGSVTPEKQI--------LSYKPQRIFPNY---DGTVQQYLENASKDALSTSSWFFEEV 369
Query: 499 ANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESE 558
+ L+ + LSGG+ Q++ IA + K+ + +LD+ +S LD E
Sbjct: 370 TK--------RLNLHRLLESNVNDLSGGELQKLYIAATLAKEADLYVLDQPSSYLDVEER 421
Query: 559 KVVQEALDRIMVNR--TTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGT 603
+V +A+ R+ R T I+ H LS AD I V +G+ + G
Sbjct: 422 YIVAKAIKRVTRERKAVTFIIDHDLSIHDYIADRIIVF-KGEPEKAGL 468
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 121 bits (306), Expect = 8e-29
Identities = 45/240 (18%), Positives = 99/240 (41%), Gaps = 20/240 (8%)
Query: 387 RDVYFSYPARPNEQIFSGFSISI-SSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLI 445
+V Y F F + + T ++G++G GK+TV+ ++ P G+
Sbjct: 3 GEVIHRY----KVNGFKLFGLPTPKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGD--P 56
Query: 446 DGINLKEFQLQWIR-KKIGLVSQEPVLFTGSIKDNIAYGKDDATTE----EIRVATELAN 500
+ K+ L+ R K+I +E ++ +K + ++ + +
Sbjct: 57 NSKVGKDEVLKRFRGKEIYNYFKEL--YSNELKIVHKIQYVEYASKFLKGTVNEILTKID 114
Query: 501 AAKFIDKLPQ--GIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESE 558
D++ + + L + LSGG QR+ +A ++L++ + + D+ +S LD
Sbjct: 115 ERGKKDEVKELLNMTNLWNKDANILSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRER 174
Query: 559 KVVQEALDRIMVNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKG--THSKLVEDPEGAY 615
+ +A+ ++ N+ ++V H L + D+I +I G+ G + S +
Sbjct: 175 MNMAKAIRELLKNKYVIVVDHDLIVLDYLTDLIHII-YGESSVYGRVSKSYAARVGINNF 233
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 58.5 bits (142), Expect = 9e-09
Identities = 18/92 (19%), Positives = 36/92 (39%), Gaps = 1/92 (1%)
Query: 1022 RESKIDPSDESGTILEDVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESG 1081
R +I + + L+ K + D Q+ D N + + G+ + ++G +G
Sbjct: 246 RPDEIKFMLKEVSDLDLSKDLKTKMKWTKIIKKLGDFQLVVD-NGEAKEGEIIGILGPNG 304
Query: 1082 SGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQ 1113
GK+T +L D G +T + +
Sbjct: 305 IGKTTFARILVGEITADEGSVTPEKQILSYKP 336
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 57.0 bits (138), Expect = 2e-08
Identities = 18/84 (21%), Positives = 36/84 (42%), Gaps = 8/84 (9%)
Query: 1047 HVSFKYPSRPDVQVFRDLNLKI-RAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLD 1105
V +Y V F+ L + + ++G++G GK+TV+ +L P+ G
Sbjct: 4 EVIHRY----KVNGFKLFGLPTPKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSK 59
Query: 1106 GVEIQKLQLKWLR-QQMGLVSQEP 1128
+ + LK R +++ +E
Sbjct: 60 VGKDE--VLKRFRGKEIYNYFKEL 81
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 Length = 214 | Back alignment and structure |
|---|
Score = 121 bits (305), Expect = 3e-31
Identities = 45/229 (19%), Positives = 101/229 (44%), Gaps = 37/229 (16%)
Query: 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 443
+E+RD+ Y ++ + +++I G G +G GK+T++ I + P GE+
Sbjct: 11 LEIRDLSVGY----DKPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEI 66
Query: 444 LIDGINLKEFQLQWIRKKIGLVSQEPVLFTG-SIKDNIA-----YG--KDDATTEEIRVA 495
+ +G+ + + ++ KI + +E ++ S++D + YG + + +
Sbjct: 67 IYNGVPITK-----VKGKIFFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALES 121
Query: 496 TELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDA 555
E+ + K + +L S G +R+ +A +L + I +LD+ A+D
Sbjct: 122 VEVLDLKKKLGEL---------------SQGTIRRVQLASTLLVNAEIYVLDDPVVAIDE 166
Query: 556 ESEKVVQEALDRIMVNRTTVIVA--HRLSTVRNADMIAVIHRGKIVEKG 602
+S+ V +++ I+ + VI++ LS D+ +H+
Sbjct: 167 DSKHKVLKSILEILKEKGIVIISSREELSYC---DVNENLHKYSTKIDK 212
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 Length = 214 | Back alignment and structure |
|---|
Score = 63.3 bits (155), Expect = 3e-11
Identities = 26/122 (21%), Positives = 50/122 (40%), Gaps = 13/122 (10%)
Query: 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHI 1102
+E+ +S Y D V + + I G V G +G GK+T++ + + P G I
Sbjct: 11 LEIRDLSVGY----DKPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEI 66
Query: 1103 TLDGVEIQKLQLKWLRQQMGLVSQEPVLFND-TIRANIAYG---KGGDATEAEIQAASEM 1158
+GV I K ++ ++ + +E ++ ++ + G + EI A E
Sbjct: 67 IYNGVPITK-----VKGKIFFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALES 121
Query: 1159 AN 1160
Sbjct: 122 VE 123
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 128 bits (323), Expect = 7e-31
Identities = 51/246 (20%), Positives = 94/246 (38%), Gaps = 33/246 (13%)
Query: 363 RKPEIDAYDTKGKILDDIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSG 422
R EI T ++ + + + Y + I G +VG +G
Sbjct: 267 RPYEIKFTKTGERVEIERETLVTYPRLVKDYGSF----RLEVEPGEIKKGEVIGIVGPNG 322
Query: 423 SGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPV--LFTGSIKDNI 480
GK+T + ++ +P G++ D ++ Q I + V L + +
Sbjct: 323 IGKTTFVKMLAGVEEPTEGKIEWDLTVA--YKPQ----YIKADYEGTVYELLSKIDASKL 376
Query: 481 AYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKD 540
+ E+ + + D+ +LSGG+ QR+AIA +L+D
Sbjct: 377 ---NSNFYKTELLKPLGIID---LYDREVN-----------ELSGGELQRVAIAATLLRD 419
Query: 541 PRILLLDEATSALDAESEKVVQEALDRIM--VNRTTVIVAHRLSTVRN-ADMIAVIHRGK 597
I LLDE ++ LD E V A+ +M +T ++V H + + +D + V G+
Sbjct: 420 ADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLMVF-EGE 478
Query: 598 IVEKGT 603
+ G
Sbjct: 479 PGKYGR 484
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 126 bits (319), Expect = 2e-30
Identities = 49/223 (21%), Positives = 90/223 (40%), Gaps = 22/223 (9%)
Query: 406 SISISSGTTAALVGQSGSGKSTVIS-----LIERFYD-PQAGEVLIDGINLKEFQLQWIR 459
+ G +VG +G+GKST + LI + + +I E Q + +
Sbjct: 41 LPVVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNYFEK 100
Query: 460 ---KKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLV 516
+I V + + D I E ++ A E + + L ++ ++
Sbjct: 101 LKNGEIRPVVKPQ--YV----DLIPKAVKGKVIELLKKADETGKLEEVVKAL--ELENVL 152
Query: 517 GEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVI 576
LSGG+ QR+AIA A+L++ DE +S LD A+ R+ +V+
Sbjct: 153 EREIQHLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVL 212
Query: 577 VA-HRLSTVRN-ADMIAVIHRGKIVEKG--THSKLVEDPEGAY 615
V H L+ + +D+I V++ G+ G + K + +
Sbjct: 213 VVEHDLAVLDYLSDIIHVVY-GEPGVYGIFSQPKGTRNGINEF 254
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 58.8 bits (143), Expect = 7e-09
Identities = 18/85 (21%), Positives = 34/85 (40%), Gaps = 4/85 (4%)
Query: 1022 RESKIDPSDESGTILEDVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESG 1081
R +I + + + + + + Y S +I+ G+ + +VG +G
Sbjct: 267 RPYEIKFTKTGERVEIERETLVTYPRLVKDYGSF----RLEVEPGEIKKGEVIGIVGPNG 322
Query: 1082 SGKSTVVSLLQRFYDPDAGHITLDG 1106
GK+T V +L +P G I D
Sbjct: 323 IGKTTFVKMLAGVEEPTEGKIEWDL 347
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 51.1 bits (123), Expect = 2e-06
Identities = 22/99 (22%), Positives = 35/99 (35%), Gaps = 16/99 (16%)
Query: 1047 HVSFKYPSRPDVQVFRDLNL-KIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGH---- 1101
+Y F L ++ G V +VG +G+GKST V +L P+
Sbjct: 26 DCVHRYGVNA----FVLYRLPVVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDS 81
Query: 1102 -----ITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTI 1135
G E+Q K ++ V + + D I
Sbjct: 82 WDGVIRAFRGNELQNYFEKLKNGEIRPVVKPQ--YVDLI 118
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} Length = 355 | Back alignment and structure |
|---|
Score = 124 bits (313), Expect = 8e-31
Identities = 69/241 (28%), Positives = 114/241 (47%), Gaps = 31/241 (12%)
Query: 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 443
IE V YP + G S I G L+G SGSGK+T++ LI P G+V
Sbjct: 15 IEFVGVEKIYPG--GARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDV 72
Query: 444 LIDGINLKEFQLQWIRKKIGLVSQEPVLFTG-SIKDNIAYG----KDDATTEEIRV--AT 496
I G + + Q ++ +GLV Q LF ++ DN+++G + + RV
Sbjct: 73 WIGGKRVTDLPPQ--KRNVGLVFQNYALFQHMTVYDNVSFGLREKRVPKDEMDARVRELL 130
Query: 497 ELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAE 556
+ ++ P +LSGGQ+QR+A+ARA+ P++LL DE +A+D +
Sbjct: 131 RFMRLESYANRFP-----------HELSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQ 179
Query: 557 SEKVVQEALDRI--MVNRTTVIVAH----RLSTVRNADMIAVIHRGKIVEKGTHSKLVED 610
+ ++ + ++ + T+V V H L AD + V+H G + + GT ++ E
Sbjct: 180 IRRELRTFVRQVHDEMGVTSVFVTHDQEEALEV---ADRVLVLHEGNVEQFGTPEEVYEK 236
Query: 611 P 611
P
Sbjct: 237 P 237
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} Length = 355 | Back alignment and structure |
|---|
Score = 73.0 bits (180), Expect = 1e-13
Identities = 32/101 (31%), Positives = 54/101 (53%), Gaps = 5/101 (4%)
Query: 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHI 1102
IE V YP + R ++ +IR G+ V L+G SGSGK+T++ L+ P G +
Sbjct: 15 IEFVGVEKIYPG--GARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDV 72
Query: 1103 TLDGVEIQKLQLKWLRQQMGLVSQEPVLF-NDTIRANIAYG 1142
+ G + L + ++ +GLV Q LF + T+ N+++G
Sbjct: 73 WIGGKRVTDLPPQ--KRNVGLVFQNYALFQHMTVYDNVSFG 111
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} Length = 253 | Back alignment and structure |
|---|
Score = 120 bits (304), Expect = 1e-30
Identities = 60/231 (25%), Positives = 101/231 (43%), Gaps = 44/231 (19%)
Query: 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 443
+ + ++ F Y A +F + ++ G A++GQ+G GKST++ L+ + P G++
Sbjct: 5 LSVENLGFYYQAEN--FLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKI 62
Query: 444 LIDGINLKEFQLQWIRKKIGLVSQEPVL-FTGSIKDNIAYG------------KDDATTE 490
+ + IG V Q F S+ D + G D
Sbjct: 63 EVY-------------QSIGFVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHD---- 105
Query: 491 EIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEAT 550
++A A +D L + L T LSGGQ+Q I IARAI + +++LLDE T
Sbjct: 106 -----YQVAMQA--LDYL--NLTHLAKREFTSLSGGQRQLILIARAIASECKLILLDEPT 156
Query: 551 SALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTV-RNADMIAVIHRGKI 598
SALD ++ +V L + N T V H+ + V A+ ++++
Sbjct: 157 SALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPNQVVAIANKTLLLNKQNF 207
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} Length = 253 | Back alignment and structure |
|---|
Score = 61.0 bits (149), Expect = 3e-10
Identities = 22/86 (25%), Positives = 40/86 (46%), Gaps = 15/86 (17%)
Query: 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHI 1102
+ + ++ F Y + +F+ LN + G +A++G++G GKST++ LL + P G I
Sbjct: 5 LSVENLGFYYQAEN--FLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKI 62
Query: 1103 TLDGVEIQKLQLKWLRQQMGLVSQEP 1128
+ Q +G V Q
Sbjct: 63 EVY-------------QSIGFVPQFF 75
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 125 bits (316), Expect = 1e-29
Identities = 52/244 (21%), Positives = 95/244 (38%), Gaps = 29/244 (11%)
Query: 363 RKPEIDAYDTKGKILDDIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSG 422
R EI ++ + +E + Y + I G +VG +G
Sbjct: 337 RPYEIRFTKLSERVDVERETLVEYPRLVKDYGSF----KLEVEPGEIRKGEVIGIVGPNG 392
Query: 423 SGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAY 482
GK+T + ++ +P G+V D ++ Q+I+ + E L + +
Sbjct: 393 IGKTTFVKMLAGVEEPTEGKVEWDLTVA--YKPQYIKAEYEGTVYE--LLSKIDSSKL-- 446
Query: 483 GKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPR 542
+ E+ + + D+ + LSGG+ QR+AIA +L+D
Sbjct: 447 -NSNFYKTELLKPLGIID---LYDRNVE-----------DLSGGELQRVAIAATLLRDAD 491
Query: 543 ILLLDEATSALDAESEKVVQEALDRIM--VNRTTVIVAHRLSTVRN-ADMIAVIHRGKIV 599
I LLDE ++ LD E V A+ +M +T ++V H + + +D + V G+
Sbjct: 492 IYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLIVF-EGEPG 550
Query: 600 EKGT 603
G
Sbjct: 551 RHGR 554
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 125 bits (315), Expect = 1e-29
Identities = 58/307 (18%), Positives = 105/307 (34%), Gaps = 29/307 (9%)
Query: 387 RDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVIS-----LIERFYD-PQA 440
D Y + G +VG +G+GK+T + LI + +
Sbjct: 95 EDCVHRYGVN---AFVLYRLPIVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDS 151
Query: 441 GEVLIDGINLKEFQLQWIRKKIGLVS---QEPVLFTGSIKDNIAYGKDDATTEEIRVATE 497
+ +I E Q + R K G + + + D + E ++ E
Sbjct: 152 WDNVIRAFRGNELQNYFERLKNGEIRPVVKPQ--YV----DLLPKAVKGKVRELLKKVDE 205
Query: 498 LANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAES 557
+ + + +L ++ ++ QLSGG+ QR+AIA A+L+ DE +S LD
Sbjct: 206 VGKFEEVVKEL--ELENVLDRELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQ 263
Query: 558 EKVVQEALDRIMVNRTTVIVA-HRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVEDPEGAY 615
V + R+ V+V H L+ + +D+I V++ G+ G P+G
Sbjct: 264 RLKVARVIRRLANEGKAVLVVEHDLAVLDYLSDVIHVVY-GEPGVYGI----FSKPKGTR 318
Query: 616 SQLIRLQEANKESEQTIDGQRKSEISMESLRHSSHRMSLRRSISRGSSIGNSSRHSISVS 675
+ + + + E R EI L S
Sbjct: 319 NGINEFLQGYLKDENV--RFRPYEIRFTKLSERVDVERETLVEYPRLVKDYGSFKLEVEP 376
Query: 676 FGLPSGQ 682
+ G+
Sbjct: 377 GEIRKGE 383
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 59.2 bits (144), Expect = 6e-09
Identities = 20/85 (23%), Positives = 36/85 (42%), Gaps = 4/85 (4%)
Query: 1022 RESKIDPSDESGTILEDVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESG 1081
R +I + S + + + +E + Y S +IR G+ + +VG +G
Sbjct: 337 RPYEIRFTKLSERVDVERETLVEYPRLVKDYGSF----KLEVEPGEIRKGEVIGIVGPNG 392
Query: 1082 SGKSTVVSLLQRFYDPDAGHITLDG 1106
GK+T V +L +P G + D
Sbjct: 393 IGKTTFVKMLAGVEEPTEGKVEWDL 417
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 53.9 bits (130), Expect = 3e-07
Identities = 12/63 (19%), Positives = 22/63 (34%), Gaps = 3/63 (4%)
Query: 1047 HVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDG 1106
+Y ++ G V +VG +G+GK+T V +L P+
Sbjct: 96 DCVHRYG---VNAFVLYRLPIVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSW 152
Query: 1107 VEI 1109
+
Sbjct: 153 DNV 155
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* Length = 235 | Back alignment and structure |
|---|
Score = 117 bits (296), Expect = 1e-29
Identities = 67/236 (28%), Positives = 117/236 (49%), Gaps = 31/236 (13%)
Query: 384 IELRDVYFSYPARPNE-QIFSGFSISISSGTTAALVGQSGSGKST---VISLIERFYDPQ 439
++L++V +Y +++I G +++G SGSGKST +I +++ P
Sbjct: 2 VKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDK---PT 58
Query: 440 AGEVLIDGIN---LKEFQLQWIR-KKIGLVSQE----PVLFTGSIKDNIA----YGKDDA 487
GEV ID I L + +L IR KIG V Q+ P+L + +N+ + A
Sbjct: 59 EGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLL---TALENVELPLIFKYRGA 115
Query: 488 TTEEIRVATELANAAKFIDKLPQGIDTLVGEHG-TQLSGGQKQRIAIARAILKDPRILLL 546
+ E R + A + ++ H QLSGGQ+QR+AIARA+ +P I+L
Sbjct: 116 MSGEER--RKRALEC--LKMA--ELEERFANHKPNQLSGGQQQRVAIARALANNPPIILA 169
Query: 547 DEATSALDAESEKVVQEALDRI--MVNRTTVIVAHRLSTVRNADMIAVIHRGKIVE 600
D+ T ALD+++ + + + L ++ +T V+V H ++ R + I + G++
Sbjct: 170 DQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVER 225
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* Length = 235 | Back alignment and structure |
|---|
Score = 61.0 bits (149), Expect = 2e-10
Identities = 28/98 (28%), Positives = 53/98 (54%), Gaps = 14/98 (14%)
Query: 1043 IELHHVSFKYPS-RPDVQVFRDLNLKIRAGKTVALVGESGSGKST---VVSLLQRFYDPD 1098
++L +V+ Y + +++NL I+ G+ V+++G SGSGKST ++ L + P
Sbjct: 2 VKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDK---PT 58
Query: 1099 AGHITLDGVEIQKL---QLKWLR-QQMGLVSQEPVLFN 1132
G + +D ++ L +L +R ++G V Q+ FN
Sbjct: 59 EGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQ---FN 93
|
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 Length = 256 | Back alignment and structure |
|---|
Score = 117 bits (296), Expect = 2e-29
Identities = 63/215 (29%), Positives = 102/215 (47%), Gaps = 21/215 (9%)
Query: 404 GFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIG 463
G S I G L+G +G+GK+T + +I P +G V + G N+ E + +RK I
Sbjct: 33 GISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVE-EPHEVRKLIS 91
Query: 464 LVSQEPVLFTG-SIKDNIA-----YGKDDATTEE-IRVATELANAAKFIDKLPQGIDTLV 516
+ +E + + + Y + EE + ATE+A + I
Sbjct: 92 YLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKDRVST----- 146
Query: 517 GEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVI 576
S G +++ IARA++ +PR+ +LDE TS LD + + V++ L + T++
Sbjct: 147 ------YSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTIL 200
Query: 577 V-AHRLSTV-RNADMIAVIHRGKIVEKGTHSKLVE 609
V +H + V D IA+IH G IVE GT +L E
Sbjct: 201 VSSHNMLEVEFLCDRIALIHNGTIVETGTVEELKE 235
|
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 Length = 256 | Back alignment and structure |
|---|
Score = 58.7 bits (143), Expect = 2e-09
Identities = 18/122 (14%), Positives = 54/122 (44%), Gaps = 10/122 (8%)
Query: 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHI 1102
+ + + + ++ + ++ +I G+ L+G +G+GK+T + ++ P +G +
Sbjct: 16 VVVKDLRKRIG---KKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIV 72
Query: 1103 TLDGVEIQKLQLKWLRQQMGLVSQEPVLFND-TIRANIA-----YGKGGDATEAEIQAAS 1156
T+ G + + + +R+ + + +E + + + Y E ++ A+
Sbjct: 73 TVFGKNVVE-EPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERAT 131
Query: 1157 EM 1158
E+
Sbjct: 132 EI 133
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A Length = 224 | Back alignment and structure |
|---|
Score = 112 bits (284), Expect = 3e-28
Identities = 57/230 (24%), Positives = 100/230 (43%), Gaps = 28/230 (12%)
Query: 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 443
+ ++ +I G S+S+ G +++G SGSGKST++ ++ P G+V
Sbjct: 5 LRAENIKKVIR---GYEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKV 61
Query: 444 LIDGIN---LKEFQLQWIR-KKIGLVSQE----PVLFTGSIKDNIA----YGKDDATTEE 491
++G E +L +R +K+G V Q P L + +N+ +
Sbjct: 62 FLEGKEVDYTNEKELSLLRNRKLGFVFQFHYLIPEL---TALENVIVPMLKMGKPKKEAK 118
Query: 492 IRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATS 551
R + +L G+ + +LSGG++QR+AIARA+ +P +L DE T
Sbjct: 119 ER-------GEYLLSEL--GLGDKLSRKPYELSGGEQQRVAIARALANEPILLFADEPTG 169
Query: 552 ALDAESEKVVQEALDRI-MVNRTTVIVAHRLSTVRNADMIAVIHRGKIVE 600
LD+ + K V + +I + V+V H + GK+V
Sbjct: 170 NLDSANTKRVMDIFLKINEGGTSIVMVTHERELAELTHRTLEMKDGKVVG 219
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A Length = 224 | Back alignment and structure |
|---|
Score = 61.4 bits (150), Expect = 2e-10
Identities = 23/88 (26%), Positives = 47/88 (53%), Gaps = 7/88 (7%)
Query: 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHI 1102
+ ++ ++ + ++L ++ G+ V+++G SGSGKST++ +L P G +
Sbjct: 5 LRAENIKKVIRG---YEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKV 61
Query: 1103 TLDGVEIQKL---QLKWLR-QQMGLVSQ 1126
L+G E+ +L LR +++G V Q
Sbjct: 62 FLEGKEVDYTNEKELSLLRNRKLGFVFQ 89
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 Length = 348 | Back alignment and structure |
|---|
Score = 115 bits (291), Expect = 6e-28
Identities = 64/241 (26%), Positives = 110/241 (45%), Gaps = 34/241 (14%)
Query: 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 443
IE+ + + S+ + SG ++G +G+GK+ + LI F+ P +G +
Sbjct: 2 IEIESLSRKW----KNFSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRI 57
Query: 444 LIDGINLKEFQLQWIRKKIGLVSQEPVLF---TGSIKDNIAYG---KDDATTEEIRVATE 497
L+DG ++ L + I V Q LF +K N+ +G K + +
Sbjct: 58 LLDGKDVT--DLSPEKHDIAFVYQNYSLFPHMN--VKKNLEFGMRMKKIKDPKRVLDTAR 113
Query: 498 LANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAES 557
+D+ P LSGG++QR+A+ARA++ +P+ILLLDE SALD +
Sbjct: 114 DLKIEHLLDRNP-----------LTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRT 162
Query: 558 EKVVQEALDRI--MVNRTTVIVAH----RLSTVRNADMIAVIHRGKIVEKGTHSKLVEDP 611
++ +E L + T + + H AD IAV+ GK+++ G ++ E P
Sbjct: 163 QENAREMLSVLHKKNKLTVLHITHDQTEARIM---ADRIAVVMDGKLIQVGKPEEIFEKP 219
Query: 612 E 612
Sbjct: 220 V 220
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 Length = 348 | Back alignment and structure |
|---|
Score = 63.3 bits (155), Expect = 1e-10
Identities = 28/101 (27%), Positives = 55/101 (54%), Gaps = 7/101 (6%)
Query: 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHI 1102
IE+ +S K+ +L+LK+ +G+ ++G +G+GK+ + L+ F+ PD+G I
Sbjct: 2 IEIESLSRKW----KNFSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRI 57
Query: 1103 TLDGVEIQKLQLKWLRQQMGLVSQEPVLF-NDTIRANIAYG 1142
LDG ++ L + + + V Q LF + ++ N+ +G
Sbjct: 58 LLDGKDVTDLSPE--KHDIAFVYQNYSLFPHMNVKKNLEFG 96
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C Length = 249 | Back alignment and structure |
|---|
Score = 112 bits (282), Expect = 1e-27
Identities = 54/234 (23%), Positives = 97/234 (41%), Gaps = 36/234 (15%)
Query: 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 443
++L+DV S + +G LVG +G+GKST+++ + G +
Sbjct: 5 MQLQDV-------AESTRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGKGSI 56
Query: 444 LIDGINLKEFQLQWIRKKIGLVSQEPVL-FTGSIKDNIAYGKDDATTEEIRVATELANAA 502
G L+ + + +SQ+ F + + + D T E+ +
Sbjct: 57 QFAGQPLEAWSATKLALHRAYLSQQQTPPFATPVWHYLTLHQHDKTRTEL-LNDVAGAL- 114
Query: 503 KFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAIL-------KDPRILLLDEATSALDA 555
+D +G QLSGG+ QR+ +A +L ++LLLDE ++LD
Sbjct: 115 --------ALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDV 166
Query: 556 ESEKVVQEALDRIMVN-----RTTVIVAHRLS-TVRNADMIAVIHRGKIVEKGT 603
Q ALD+I+ V+ +H L+ T+R+A ++ GK++ G
Sbjct: 167 AQ----QSALDKILSALSQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGR 216
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C Length = 249 | Back alignment and structure |
|---|
Score = 69.5 bits (171), Expect = 5e-13
Identities = 27/155 (17%), Positives = 56/155 (36%), Gaps = 18/155 (11%)
Query: 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHI 1102
++L V+ L+ ++RAG+ + LVG +G+GKST+++ + G I
Sbjct: 5 MQLQDVAES-------TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGKGSI 56
Query: 1103 TLDGVEIQKLQLKWLRQQMGLVSQEPVL-FNDTIRANIAYGKGGDATEAEIQAASEMAN- 1160
G ++ L +SQ+ F + + + + +
Sbjct: 57 QFAGQPLEAWSATKLALHRAYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALAL 116
Query: 1161 ---AHKFICSL-----QQVRTSRLLLVMIPWLESE 1187
+ L Q+VR + ++L + P
Sbjct: 117 DDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPA 151
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* Length = 353 | Back alignment and structure |
|---|
Score = 107 bits (270), Expect = 3e-25
Identities = 66/252 (26%), Positives = 114/252 (45%), Gaps = 45/252 (17%)
Query: 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGE 442
I +++V + + +I+I +G ++G SG+GK+T + +I P GE
Sbjct: 3 RIIVKNVSKVFKKGKVVAL-DNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGE 61
Query: 443 VLIDGINLKEFQLQWIRKK---IGLVSQEPVLF-TGSIKDNIAYG----KDDATTEEIRV 494
+ D + + + IG+V Q L+ + +NIA+ K RV
Sbjct: 62 LYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRV 121
Query: 495 --ATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSA 552
++ + ++ P+ +LSG Q+QR+A+ARA++KDP +LLLDE S
Sbjct: 122 EEVAKILDIHHVLNHFPR-----------ELSGAQQQRVALARALVKDPSLLLLDEPFSN 170
Query: 553 LDAE------SE-KVVQEALDRIMVNRTTVIVAH------RLSTVRNADMIAVIHRGKIV 599
LDA + K VQ L T ++V+H + AD + V+ +GK+V
Sbjct: 171 LDARMRDSARALVKEVQSRL-----GVTLLVVSHDPADIFAI-----ADRVGVLVKGKLV 220
Query: 600 EKGTHSKLVEDP 611
+ G L ++P
Sbjct: 221 QVGKPEDLYDNP 232
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* Length = 353 | Back alignment and structure |
|---|
Score = 54.6 bits (132), Expect = 8e-08
Identities = 25/105 (23%), Positives = 48/105 (45%), Gaps = 5/105 (4%)
Query: 1042 EIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGH 1101
I + +VS + V ++N+ I G+ ++G SG+GK+T + ++ P G
Sbjct: 3 RIIVKNVSKVFKK-GKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGE 61
Query: 1102 ITLDGVEIQKLQLKWL---RQQMGLVSQEPVLF-NDTIRANIAYG 1142
+ D + + +++G+V Q L+ N T NIA+
Sbjct: 62 LYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFP 106
|
| >2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} Length = 362 | Back alignment and structure |
|---|
Score = 93.4 bits (233), Expect = 3e-20
Identities = 78/250 (31%), Positives = 122/250 (48%), Gaps = 48/250 (19%)
Query: 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGE 442
+I+L ++ + N + ++ I G AL+G SGSGKST++ I Y P +G+
Sbjct: 3 EIKLENIVKKFG---NFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGK 59
Query: 443 VLIDG--INLKEFQLQWIRKKIGLVSQEPVLF-TGSIKDNIAYG----KDDATTEEIRVA 495
+ D + +L + +GLV Q L+ ++ NIA+ K + +V
Sbjct: 60 IYFDEKDVT----ELPPKDRNVGLVFQNWALYPHMTVYKNIAFPLELRKAPREEIDKKVR 115
Query: 496 TELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDA 555
AK + ID L+ + QLSGGQ+QR+AIARA++K+P +LLLDE S LDA
Sbjct: 116 ----EVAKML-----HIDKLLNRYPWQLSGGQQQRVAIARALVKEPEVLLLDEPLSNLDA 166
Query: 556 --------ESEKVVQEALDRIMVNRTTVIVAH------RLSTVRNADMIAVIHRGKIVEK 601
E +++ +E + TTV V H + AD IAVI G+I++
Sbjct: 167 LLRLEVRAELKRLQKE------LGITTVYVTHDQAEALAM-----ADRIAVIREGEILQV 215
Query: 602 GTHSKLVEDP 611
GT ++ P
Sbjct: 216 GTPDEVYYKP 225
|
| >2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} Length = 362 | Back alignment and structure |
|---|
Score = 50.7 bits (122), Expect = 2e-06
Identities = 24/65 (36%), Positives = 39/65 (60%), Gaps = 3/65 (4%)
Query: 1042 EIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGH 1101
EI+L ++ K+ + ++NLKI+ G+ +AL+G SGSGKST++ + Y P +G
Sbjct: 3 EIKLENIVKKFG---NFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGK 59
Query: 1102 ITLDG 1106
I D
Sbjct: 60 IYFDE 64
|
| >2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} Length = 359 | Back alignment and structure |
|---|
Score = 86.5 bits (215), Expect = 5e-18
Identities = 72/250 (28%), Positives = 119/250 (47%), Gaps = 48/250 (19%)
Query: 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGE 442
I + ++ + + G S + G AL+G SG GK+T + ++ Y P +GE
Sbjct: 3 SIRVVNLKKYFG---KVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGE 59
Query: 443 VLIDG--INLKEFQLQWIRKKIGLVSQEPVLF-TGSIKDNIAYG----KDDATTEEIRVA 495
+ D +N + +++G+V Q L+ ++ +NIA+ + E RV
Sbjct: 60 IYFDDVLVN----DIPPKYREVGMVFQNYALYPHMTVFENIAFPLRARRISKDEVEKRVV 115
Query: 496 TELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDA 555
A+ + ID L+ TQLSGGQ+QR+A+ARA++K P++LL DE S LDA
Sbjct: 116 ----EIARKL-----LIDNLLDRKPTQLSGGQQQRVALARALVKQPKVLLFDEPLSNLDA 166
Query: 556 --------ESEKVVQEALDRIMVNRTTVIVAH------RLSTVRNADMIAVIHRGKIVEK 601
E + + QE + T+V V H + A IAV ++GK+V+
Sbjct: 167 NLRMIMRAEIKHLQQE------LGITSVYVTHDQAEAMTM-----ASRIAVFNQGKLVQY 215
Query: 602 GTHSKLVEDP 611
GT ++ + P
Sbjct: 216 GTPDEVYDSP 225
|
| >2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} Length = 359 | Back alignment and structure |
|---|
Score = 45.7 bits (109), Expect = 6e-05
Identities = 20/65 (30%), Positives = 35/65 (53%), Gaps = 3/65 (4%)
Query: 1042 EIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGH 1101
I + ++ KY V+ ++ +++ G+ VAL+G SG GK+T + +L Y P +G
Sbjct: 3 SIRVVNLK-KYF--GKVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGE 59
Query: 1102 ITLDG 1106
I D
Sbjct: 60 IYFDD 64
|
| >1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A Length = 372 | Back alignment and structure |
|---|
Score = 85.0 bits (211), Expect = 2e-17
Identities = 65/252 (25%), Positives = 113/252 (44%), Gaps = 46/252 (18%)
Query: 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGE 442
+ L DV+ + S+ + G L+G SG GK+T + +I +P G+
Sbjct: 3 GVRLVDVWKVFG---EVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQ 59
Query: 443 VLIDG--INLKEFQLQWIRKK--IGLVSQEPVLF-TGSIKDNIAYG----KDDATTEEIR 493
+ I + E + K I +V Q L+ ++ DNIA+ K + R
Sbjct: 60 IYIGDKLVADPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQR 119
Query: 494 VATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSAL 553
V A+ + G+ L+ +LSGGQ+QR+A+ RAI++ P++ L+DE S L
Sbjct: 120 VR----EVAELL-----GLTELLNRKPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNL 170
Query: 554 DA--------ESEKVVQEALDRIMVNRTTVIVAH------RLSTVRNADMIAVIHRGKIV 599
DA E +K+ ++ + TT+ V H + D IAV++RG +
Sbjct: 171 DAKLRVRMRAELKKLQRQ------LGVTTIYVTHDQVEAMTM-----GDRIAVMNRGVLQ 219
Query: 600 EKGTHSKLVEDP 611
+ G+ ++ + P
Sbjct: 220 QVGSPDEVYDKP 231
|
| >1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A Length = 372 | Back alignment and structure |
|---|
Score = 47.2 bits (113), Expect = 2e-05
Identities = 16/65 (24%), Positives = 34/65 (52%), Gaps = 3/65 (4%)
Query: 1042 EIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGH 1101
+ L V + +V R+++L+++ G+ + L+G SG GK+T + ++ +P G
Sbjct: 3 GVRLVDVWKVFG---EVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQ 59
Query: 1102 ITLDG 1106
I +
Sbjct: 60 IYIGD 64
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 86.2 bits (213), Expect = 4e-17
Identities = 60/301 (19%), Positives = 114/301 (37%), Gaps = 36/301 (11%)
Query: 344 LSAFGAGQAAAFKMFETINRKPEIDAYDTKGKILDDIRGDIELRDVYFSYPARPNEQIFS 403
++ F + A + E R + +D D+ + +Y A+ + +
Sbjct: 396 MTIFLHEKKAKDILDEFRKRAVDNIPVGPNFDDEEDEGEDLCNCEFSLAYGAKI---LLN 452
Query: 404 GFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIG 463
+ + + G +G GKST++ I A +DG +E +
Sbjct: 453 KTQLRLKRARRYGICGPNGCGKSTLMRAI-------ANG-QVDGFPTQE------ECRTV 498
Query: 464 LVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQL 523
V + + T S + + + + + +L + + I + L
Sbjct: 499 YVEHD-IDGTHSDTSVLDFVFESGVGTKEAIKDKLIEFGFTDEMIAMPI--------SAL 549
Query: 524 SGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHR--- 580
SGG K ++A+ARA+L++ ILLLDE T+ LD + + L+ T++ ++H
Sbjct: 550 SGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNTC--GITSITISHDSVF 607
Query: 581 LSTVRNADMIAVIHRGKIVE-KGTHSKLVED-PE-GAYSQLIRLQEANKESEQTIDGQRK 637
L V + I K+ + KG ++ V+ P AY +L K E K
Sbjct: 608 LDNV--CEYIINYEGLKLRKYKGNFTEFVKKCPAAKAYEELSNTDLEFKFPEPGYLEGVK 665
Query: 638 S 638
+
Sbjct: 666 T 666
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 63.9 bits (155), Expect = 3e-10
Identities = 22/97 (22%), Positives = 42/97 (43%), Gaps = 13/97 (13%)
Query: 522 QLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRL 581
LSGGQK ++ +A + P +++LDE T+ LD +S + +AL +I+ H
Sbjct: 901 GLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEF--EGGVIIITHSA 958
Query: 582 STVRN-ADMIAVIHRGKIVEKGTHSKLVEDPEGAYSQ 617
+N + + + G++ G +
Sbjct: 959 EFTKNLTEEVWAVKDGRMTPSG----------HNWVS 985
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 50.4 bits (120), Expect = 3e-06
Identities = 16/65 (24%), Positives = 35/65 (53%), Gaps = 1/65 (1%)
Query: 1040 KGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDA 1099
K +++ ++ F+YP D+N + +A++G +G+GKST++++L P +
Sbjct: 669 KAIVKVTNMEFQYPG-TSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTS 727
Query: 1100 GHITL 1104
G +
Sbjct: 728 GEVYT 732
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 47.7 bits (113), Expect = 2e-05
Identities = 24/107 (22%), Positives = 45/107 (42%), Gaps = 18/107 (16%)
Query: 372 TKGKILDDIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISL 431
TK K + +++ ++ F YP + + + S + A++G +G+GKST+I++
Sbjct: 666 TKQKAI------VKVTNMEFQYPGTS-KPQITDINFQCSLSSRIAVIGPNGAGKSTLINV 718
Query: 432 IERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKD 478
+ P +GEV N +I + Q S D
Sbjct: 719 LTGELLPTSGEVYT-HENC----------RIAYIKQHAFAHIESHLD 754
|
| >1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* Length = 372 | Back alignment and structure |
|---|
Score = 83.4 bits (207), Expect = 5e-17
Identities = 65/250 (26%), Positives = 119/250 (47%), Gaps = 48/250 (19%)
Query: 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGE 442
+++L ++ + N + +++I G L+G SG GK+T + +I +P G
Sbjct: 11 EVKLENLTKRFG---NFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGR 67
Query: 443 VLIDG--INLKEFQLQWIRKKIGLVSQEPVLF-TGSIKDNIAYG----KDDATTEEIRVA 495
+ + L + I +V Q ++ ++ +NIA+ K + RV
Sbjct: 68 IYFGDRDVT----YLPPKDRNISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVR 123
Query: 496 TELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDA 555
AA+ + I+ L+ + QLSGGQ+QR+A+ARAI+ +P +LL+DE S LDA
Sbjct: 124 ----WAAELL-----QIEELLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDA 174
Query: 556 --------ESEKVVQEALDRIMVNRTTVIVAH------RLSTVRNADMIAVIHRGKIVEK 601
E +K+ Q+ + TT+ V H + D IAV++RG++++
Sbjct: 175 KLRVAMRAEIKKLQQK------LKVTTIYVTHDQVEAMTM-----GDRIAVMNRGQLLQI 223
Query: 602 GTHSKLVEDP 611
G+ +++ P
Sbjct: 224 GSPTEVYLRP 233
|
| >1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* Length = 372 | Back alignment and structure |
|---|
Score = 47.2 bits (113), Expect = 2e-05
Identities = 17/65 (26%), Positives = 34/65 (52%), Gaps = 3/65 (4%)
Query: 1042 EIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGH 1101
E++L +++ ++ + LNL I+ G+ + L+G SG GK+T + ++ +P G
Sbjct: 11 EVKLENLTKRFG---NFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGR 67
Query: 1102 ITLDG 1106
I
Sbjct: 68 IYFGD 72
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* Length = 257 | Back alignment and structure |
|---|
Score = 79.9 bits (198), Expect = 2e-16
Identities = 52/224 (23%), Positives = 100/224 (44%), Gaps = 34/224 (15%)
Query: 403 SGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKI 462
G SIS++ G ++G +GSGKST+I++I F G V + ++ + +
Sbjct: 24 DGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHY- 82
Query: 463 GLVS--QEPVLFTG-SIKDNIAYGKDDATT---------------EEIRVATELANAAKF 504
G+V Q P ++ +N+ G+ EE+ A K
Sbjct: 83 GIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMV-----EKAFKI 137
Query: 505 IDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEA 564
++ L + L +LSGGQ + + I RA++ +P+++++DE + + +
Sbjct: 138 LEFL--KLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPG-LA--HDI 192
Query: 565 LDRIMVNR----TTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGT 603
+ ++ + T +I+ HRL V N D + V+ G+I+ +G
Sbjct: 193 FNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGR 236
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* Length = 257 | Back alignment and structure |
|---|
Score = 51.4 bits (124), Expect = 6e-07
Identities = 12/50 (24%), Positives = 27/50 (54%)
Query: 1063 DLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKL 1112
+++ + G ++G +GSGKST+++++ F D G + + +I
Sbjct: 25 GVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNK 74
|
| >3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A Length = 381 | Back alignment and structure |
|---|
Score = 76.0 bits (188), Expect = 1e-14
Identities = 51/195 (26%), Positives = 85/195 (43%), Gaps = 51/195 (26%)
Query: 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLI---ERFYDPQ 439
++L++V ++ + ++ I G VG SG GKST++ +I E
Sbjct: 3 SVQLQNVTKAWG---EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLE---TIT 56
Query: 440 AGEVLIDG--INLKEFQLQWIRKKIGLVSQE----PVLFTGSIKDNIAYG----KDDATT 489
+G++ I +N + +G+V Q P L S+ +N+++G
Sbjct: 57 SGDLFIGEKRMN----DTPPAERGVGMVFQSYALYPHL---SVAENMSFGLKLAGAKK-- 107
Query: 490 EEI--RVATELANAAK------FIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDP 541
E I RV A+ +D+ P+ LSGGQ+QR+AI R ++ +P
Sbjct: 108 EVINQRVN----QVAEVLQLAHLLDRKPK-----------ALSGGQRQRVAIGRTLVAEP 152
Query: 542 RILLLDEATSALDAE 556
+ LLDE S LDA
Sbjct: 153 SVFLLDEPLSNLDAA 167
|
| >3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A Length = 381 | Back alignment and structure |
|---|
Score = 44.8 bits (107), Expect = 1e-04
Identities = 18/45 (40%), Positives = 27/45 (60%), Gaps = 3/45 (6%)
Query: 1042 EIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKST 1086
++L +V+ + +V V +D+NL I G+ V VG SG GKST
Sbjct: 3 SVQLQNVTKAWG---EVVVSKDINLDIHEGEFVVFVGPSGCGKST 44
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 72.9 bits (180), Expect = 2e-14
Identities = 60/243 (24%), Positives = 116/243 (47%), Gaps = 34/243 (13%)
Query: 385 ELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVL 444
E++ ++ Y A G + + G L+G +G+GK+T +S I Q G+++
Sbjct: 8 EVQSLHVYYGA---IHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKII 64
Query: 445 IDGINLKEFQLQWI-RKKIGLVSQEPVLFTG-SIKDNI---AYGKDDATTEEIRVATELA 499
+G ++ I R I LV + +F ++ +N+ AY + D + +L
Sbjct: 65 FNGQDITNKPAHVINRMGIALVPEGRRIFPELTVYENLMMGAYNRKDKE----GIKRDLE 120
Query: 500 NAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEK 559
+L + + L G LSGG++Q +AI RA++ P++L++DE + L +
Sbjct: 121 WIFSLFPRLKERLKQLGG----TLSGGEQQMLAIGRALMSRPKLLMMDEPSLGL---API 173
Query: 560 VVQEALDRI-MVNR--TTVIVAHRLSTVRNADM---IA----VIHRGKIVEKGTHSKLVE 609
+V E + I +N+ TT+++ +NA +A V+ G+IV +G S+L++
Sbjct: 174 LVSEVFEVIQKINQEGTTILLVE-----QNALGALKVAHYGYVLETGQIVLEGKASELLD 228
Query: 610 DPE 612
+
Sbjct: 229 NEM 231
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 51.3 bits (124), Expect = 4e-07
Identities = 15/56 (26%), Positives = 29/56 (51%)
Query: 1057 DVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKL 1112
+ + ++LK+ G+ V L+G +G+GK+T +S + G I +G +I
Sbjct: 18 AIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNK 73
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 74.9 bits (183), Expect = 1e-13
Identities = 93/633 (14%), Positives = 194/633 (30%), Gaps = 187/633 (29%)
Query: 353 AAFKMFETINRKPE---------IDAYDTK---GKILDDIRGDIELRDVYFSYPARP--N 398
++F T+ K E + + K I + R + +Y R +
Sbjct: 63 GTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYND 122
Query: 399 EQIFSGFSIS--------------ISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVL 444
Q+F+ +++S + + G GSGK+ V A +V
Sbjct: 123 NQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWV-----------ALDVC 171
Query: 445 ID-GINLK-EFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAA 502
+ + K +F++ W+ + + + + + Y ++ + +
Sbjct: 172 LSYKVQCKMDFKIFWL--NLKNCNSPETVLE--MLQKLLY----------QIDPNWTSRS 217
Query: 503 KFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKD---PRILL-LDEATSALDAESE 558
+ I ++ + + R +LK LL L + ++
Sbjct: 218 DHSSNIKLRIHSI------------QAEL---RRLLKSKPYENCLLVLL------NVQNA 256
Query: 559 KVVQEALD---RIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVEDPEGAY 615
K A + +I++ TT R + + TH L
Sbjct: 257 KAW-NAFNLSCKILL--TT----------RFKQVTDFL----SAATTTHISLDHHSMT-- 297
Query: 616 SQLIRLQEANKESEQ---TIDGQRKSEISMESLRHSSHRMSL-RRSISRGSSIGNSSRH- 670
L E + R ++ E L + R+S+ SI G + ++ +H
Sbjct: 298 -----LTPD--EVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHV 350
Query: 671 -------SISVSFGLPSGQFADTALGEPAGPSQPTEEVA--PE---VPTRRLAYL--NKP 716
I S L EPA + + ++ P +PT L+ + +
Sbjct: 351 NCDKLTTIIESSL---------NVL-EPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVI 400
Query: 717 --EIPVILA-----GTIAAMANGVILPIYGLLISSVIETFFKPPHELKKDSRFWALI--Y 767
++ V++ + + I + + + K +E ++ Y
Sbjct: 401 KSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKV----KLENEYALHRS---IVDHY 453
Query: 768 ---LALGAGSFLLSPAQSYFFAVAGNKL--IQRIRSMCFEKVIHMEVSWFDEP-EHSSGA 821
+ + YF++ G+ L I+ M +++ ++ + ++ H S A
Sbjct: 454 NIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTA 513
Query: 822 IGARLSADAASVRALVGDA---LARIVQNIST--AAAGLIIAFTASWQLALIILVMLPLI 876
A S+ + I N I+ F + LI
Sbjct: 514 WNAS-----GSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLIC------- 561
Query: 877 GVSGYT---QMKFMKGFSADAKMKYEEA-SQVA 905
S YT ++ M A+ + +EEA QV
Sbjct: 562 --SKYTDLLRIALM----AEDEAIFEEAHKQVQ 588
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 61.8 bits (149), Expect = 1e-09
Identities = 83/629 (13%), Positives = 189/629 (30%), Gaps = 209/629 (33%)
Query: 242 AASVVEQTIGSIRTVASFTGEKQAMSN----YKKFLVTAYK--SGVQEGL-----AAGIG 290
+ + + + ++ + N + K+ V+ + +++ L A +
Sbjct: 95 MSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVL 154
Query: 291 L-GMVMLIVFCSYALSVWYG-GKLILEEGYNGGQVVNVM--VAVLTGS------MSLGEA 340
+ G++ G GK + ++V V ++L
Sbjct: 155 IDGVL--------------GSGKTWV--------ALDVCLSYKVQCKMDFKIFWLNLKN- 191
Query: 341 SPCLSAFGAGQAAAFKMFETINRKPEIDA-YDTKGKILDDIRGDIE-------------- 385
C S +M + + + ID + ++ +I+ I
Sbjct: 192 --CNSP-----ETVLEMLQKLLYQ--IDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKP 242
Query: 386 -------LRDVYFSYPARPNEQIFSGFSIS----ISSGTT--AALVGQSGSGKSTVISLI 432
L +V N + ++ F++S + TT + + +T ISL
Sbjct: 243 YENCLLVLLNVQ-------NAKAWNAFNLSCKILL---TTRFKQVTDFLSAATTTHISLD 292
Query: 433 ER---FYDPQAGEVLIDGINLKEFQLQWIRKKIG--LVSQEPVLFTGSIKDNIAYGKDDA 487
+ +L+ ++ + L +S + SI+D +A
Sbjct: 293 HHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLS----IIAESIRDGLA------ 342
Query: 488 TTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKD----PRI 543
T + + DKL I++ + L + +++ ++ P I
Sbjct: 343 TWDNWKHVN--------CDKLTTIIESSL----NVLEPAEYRKMFDRLSVFPPSAHIPTI 390
Query: 544 LLLDEATSAL-----DAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIH---- 594
LL S + ++ VV + +V + + + I
Sbjct: 391 LL-----SLIWFDVIKSDVMVVVNKLHKYSLVEK------------QPKESTISIPSIYL 433
Query: 595 --RGKIVEKGT-HSKLVEDPEGAYSQLIRLQEANKESEQTIDGQRKSEIS--MESLRHSS 649
+ K+ + H +V+ Y + + +++ +D S I ++++ H
Sbjct: 434 ELKVKLENEYALHRSIVD----HY-NIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEH-P 487
Query: 650 HRMSLRRSISRGSS-IGNSSRHSISVSFGLPSGQFADTALGEPAGPSQPTEEVAPEVPTR 708
RM+L R + + RH TA + +
Sbjct: 488 ERMTLFRMVFLDFRFLEQKIRHD-------------STAWNASGS-------ILNTLQQL 527
Query: 709 RL--AYLNKPEIPVILAGTIAAMANGVILPIYGLLISSVIETFFKPPHELKKDSRFWALI 766
+ Y+ + P Y L++++++ K L S++ L+
Sbjct: 528 KFYKPYICDND------------------PKYERLVNAILDFLPKIEENLIC-SKYTDLL 568
Query: 767 YLALGAGSFLLSPAQSYFFAVAGNKLIQR 795
+A L F A +K +QR
Sbjct: 569 RIA-------LMAEDEAIFEEA-HKQVQR 589
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 59.1 bits (142), Expect = 1e-08
Identities = 32/191 (16%), Positives = 63/191 (32%), Gaps = 38/191 (19%)
Query: 1022 RESKIDPSDESGTILEDVKGEIELHHVSFKYP-SRPD-VQVFRDLNLKIRAGKTVALVGE 1079
+ + PS + +E + V KY SR R L++R K V + G
Sbjct: 99 KTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGV 158
Query: 1080 SGSGKSTVV-------SLLQRFYDP----DAGHITLDGVEIQKLQLKWLRQQMGLVSQEP 1128
GSGK+ V + + + + ++ LQ L Q+
Sbjct: 159 LGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQK--LLYQIDPNWTSR 216
Query: 1129 VLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQVRTSRLLLVM----IPW- 1183
+ I+ I + +AE++ + + S LLV+
Sbjct: 217 SDHSSNIKLRI------HSIQAELR---------RLLKSKPYENC---LLVLLNVQNAKA 258
Query: 1184 LESEDSNCQVV 1194
+ + +C+++
Sbjct: 259 WNAFNLSCKIL 269
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 50.2 bits (119), Expect = 4e-06
Identities = 83/616 (13%), Positives = 167/616 (27%), Gaps = 187/616 (30%)
Query: 12 ASKSQEEVGKDSSMSGNEHDSEKGK-----QTEKTESVPFYKLFTFADSADTALM----- 61
S + E + SM + ++ + Q +V + + AL+
Sbjct: 95 MSPIKTEQ-RQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYL---KLRQALLELRPA 150
Query: 62 -IIGSIGAIGNG-LCLPLMTLLFGDLINTFGD-----NQNNSETVDKVSKVAVKFVYLGI 114
+ G +G+G + L L + N N + + V ++ K +Y
Sbjct: 151 KNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQID 210
Query: 115 GSGIASFLQVTCWMITGERQATRIRGLYLKT-------ILRQDV------AFFDNE---- 157
+ + + + +R L +L +V F+
Sbjct: 211 PNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLL-NVQNAKAWNAFNLSCKIL 269
Query: 158 --TNTGEVVGRMSGDTV----LIQDAMGEKVGKFLQLMATFLGGFLIAFIKGWLLTLVML 211
T +V +S T L +M + L+ +L + L +L
Sbjct: 270 LTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLD------CRPQDLPREVL 323
Query: 212 SSIPL-LAMSGGVMAIMISKMSSRGQG----AYAKAASVVEQTIGSIRTVASFTGEKQAM 266
++ P L++ +A I + K +++E ++ + E + M
Sbjct: 324 TTNPRRLSI----IAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEP-----AEYRKM 374
Query: 267 SNYKKFLVTAYKSGVQEGLAAGIGLGMVMLIVFCSYALSVWYGGKLILEEGYNGGQVVNV 326
+ + V + + I+ W+ VVN
Sbjct: 375 --FDRLSV--FPPSAH-----------IPTILLSLI----WFDVIKSDVM-----VVVNK 410
Query: 327 MVAVLTGSMSLGEASPCLSAFG--AGQAAAFKMFETINRKPE-----IDAYD-TKGKILD 378
+ SL E P S + ++ + + +D Y+ K D
Sbjct: 411 LH-----KYSLVEKQPKESTISIPSIY---LELKVKLENEYALHRSIVDHYNIPKTFDSD 462
Query: 379 DIRGDIELRDVYF-SYPAR-----PNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLI 432
D+ D YF S+ + + + F
Sbjct: 463 DLIPPYL--DQYFYSHIGHHLKNIEHPERMTLFR-------------------------- 494
Query: 433 ERFYDPQAGEVLIDGINLKEFQLQWIRKKI---GLVSQEPVLFTGSIKDNIAYGK---DD 486
V +D +++ +KI +++ Y D+
Sbjct: 495 ---------MVFLD--------FRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDN 537
Query: 487 ATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLL 546
E V +D LP+ L + + RI L+
Sbjct: 538 DPKYERLVNA-------ILDFLPK--------IEENLICSKYTDLL---------RIALM 573
Query: 547 DEATSALDAESEKVVQ 562
E A+ E+ K VQ
Sbjct: 574 AE-DEAIFEEAHKQVQ 588
|
| >3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B Length = 339 | Back alignment and structure |
|---|
Score = 59.3 bits (143), Expect = 3e-09
Identities = 33/187 (17%), Positives = 66/187 (35%), Gaps = 22/187 (11%)
Query: 431 LIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTE 490
++ + E ++ + + I V + L + I + +E
Sbjct: 156 VVREVLNLDKFETAYKKLSELKGGSGGTEELIEKVKKYKALAREAALSKIG----ELASE 211
Query: 491 EIRVATELANAAKFIDKLPQGIDTLVGEHG-----TQLSGGQKQ------RIAIARAILK 539
TE + + + V G T LSGG++ R+A++ +
Sbjct: 212 IFAEFTEGKYSEVVVRAEENKVRLFVVWEGKERPLTFLSGGERIALGLAFRLAMSLYLAG 271
Query: 540 DPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVA-HRLSTVRNADMIAVI----- 593
+ +L+LDE T LD E + + ++R + VI+ H AD + I
Sbjct: 272 EISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEELKDAADHVIRISLENG 331
Query: 594 -HRGKIV 599
+ ++V
Sbjct: 332 SSKVEVV 338
|
| >2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A* Length = 250 | Back alignment and structure |
|---|
Score = 56.8 bits (138), Expect = 8e-09
Identities = 58/230 (25%), Positives = 99/230 (43%), Gaps = 43/230 (18%)
Query: 398 NEQIFSGFSISISSGTTAALVGQSGSGKSTVISLI---ERFYDPQAGEVLIDGINLKEFQ 454
E I G ++ + G AL+G +G+GKST+ ++ Y + GE+L+DG N+ E
Sbjct: 15 GETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPE-YTVERGEILLDGENILELS 73
Query: 455 LQWIRKKIG--LVSQEPVLFTGSIKDNIAYGKDDATTEEIRVAT-----ELANAAKFIDK 507
R + G L Q PV G +R+A A+F K
Sbjct: 74 PD-ERARKGLFLAFQYPVEVPGV-----------TIANFLRLALQAKLGREVGVAEFWTK 121
Query: 508 LPQGIDTL------------VGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDA 555
+ + ++ L G SGG+K+R I + ++ +P +LDE S LD
Sbjct: 122 VKKALELLDWDESYLSRYLNEG-----FSGGEKKRNEILQLLVLEPTYAVLDETDSGLDI 176
Query: 556 ESEKVVQEALDRIMV-NRTTVIVAH--RLSTVRNADMIAVIHRGKIVEKG 602
++ KVV ++ + N +++ H R+ D + V+ G++V G
Sbjct: 177 DALKVVARGVNAMRGPNFGALVITHYQRILNYIQPDKVHVMMDGRVVATG 226
|
| >2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A* Length = 250 | Back alignment and structure |
|---|
Score = 42.9 bits (102), Expect = 3e-04
Identities = 23/73 (31%), Positives = 35/73 (47%), Gaps = 7/73 (9%)
Query: 1042 EIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLL--QRFYDPDA 1099
EI S + + +NL + G+ AL+G +G+GKST+ +L Y +
Sbjct: 5 EIRDLWASID-----GETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVER 59
Query: 1100 GHITLDGVEIQKL 1112
G I LDG I +L
Sbjct: 60 GEILLDGENILEL 72
|
| >2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A Length = 267 | Back alignment and structure |
|---|
Score = 55.2 bits (134), Expect = 3e-08
Identities = 59/231 (25%), Positives = 103/231 (44%), Gaps = 35/231 (15%)
Query: 398 NEQIFSGFSISISSGTTAALVGQSGSGKSTVISLI---ERFYDPQAGEVLIDGINLKEFQ 454
++ I G S+ + G A++G +GSGKST+ + + E Y+ G V G +L
Sbjct: 32 DKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGRED-YEVTGGTVEFKGKDLLALS 90
Query: 455 LQWIRKKIG--LVSQEPVLFTG-SIKDNIAYGKDDATTEEIRVATELA--NAAKFIDKLP 509
+ R G + Q PV G S + + +R + F D +
Sbjct: 91 PE-DRAGEGIFMAFQYPVEIPGVSNQFFLQ-----TALNAVRSYRGQETLDRFDFQDLME 144
Query: 510 QGIDTL------------VGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAES 557
+ I L VG SGG+K+R I + + +P + +LDE+ S LD ++
Sbjct: 145 EKIALLKMPEDLLTRSVNVG-----FSGGEKKRNDILQMAVLEPELCILDESDSGLDIDA 199
Query: 558 EKVVQEALDRIMV-NRTTVIVAH--RLSTVRNADMIAVIHRGKIVEKGTHS 605
KVV + ++ + R+ +IV H R+ D + V+++G+IV+ G +
Sbjct: 200 LKVVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSGDFT 250
|
| >2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A Length = 267 | Back alignment and structure |
|---|
Score = 42.5 bits (101), Expect = 4e-04
Identities = 18/58 (31%), Positives = 32/58 (55%), Gaps = 2/58 (3%)
Query: 1057 DVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLL--QRFYDPDAGHITLDGVEIQKL 1112
D + R L+L + G+ A++G +GSGKST+ + L + Y+ G + G ++ L
Sbjct: 32 DKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLAL 89
|
| >1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B* Length = 148 | Back alignment and structure |
|---|
Score = 52.8 bits (127), Expect = 4e-08
Identities = 21/92 (22%), Positives = 40/92 (43%), Gaps = 13/92 (14%)
Query: 521 TQLSGGQKQRIAIA------RAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTT 574
T LSGG++ + +A + + +L+LDE T LD E + + ++R +
Sbjct: 56 TFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQ 115
Query: 575 VIV-AHRLSTVRNADMI------AVIHRGKIV 599
VI+ +H AD + + ++V
Sbjct: 116 VILVSHDEELKDAADHVIRISLENGSSKVEVV 147
|
| >3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B* Length = 371 | Back alignment and structure |
|---|
Score = 45.2 bits (107), Expect = 1e-04
Identities = 17/83 (20%), Positives = 33/83 (39%), Gaps = 7/83 (8%)
Query: 522 QLSGGQKQRIAIARAI-------LKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTT 574
LSGG++ +A++ + ++LDE T LD + E ++
Sbjct: 280 NLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVKSIPQM 339
Query: 575 VIVAHRLSTVRNADMIAVIHRGK 597
+I+ H AD+I + +
Sbjct: 340 IIITHHRELEDVADVIINVKKDG 362
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 1198 | |||
| 4f4c_A | 1321 | Multidrug resistance protein PGP-1; ABC transporte | 100.0 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 100.0 | |
| 4f4c_A | 1321 | Multidrug resistance protein PGP-1; ABC transporte | 100.0 | |
| 3qf4_A | 587 | ABC transporter, ATP-binding protein; multidrug tr | 100.0 | |
| 3qf4_B | 598 | Uncharacterized ABC transporter ATP-binding prote | 100.0 | |
| 4a82_A | 578 | Cystic fibrosis transmembrane conductance regulat; | 100.0 | |
| 2yl4_A | 595 | ATP-binding cassette SUB-family B member 10, mitoc | 100.0 | |
| 3b5x_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 100.0 | |
| 3b60_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 100.0 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 100.0 | |
| 3qf4_A | 587 | ABC transporter, ATP-binding protein; multidrug tr | 100.0 | |
| 3qf4_B | 598 | Uncharacterized ABC transporter ATP-binding prote | 100.0 | |
| 4a82_A | 578 | Cystic fibrosis transmembrane conductance regulat; | 100.0 | |
| 3b5x_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 100.0 | |
| 2yl4_A | 595 | ATP-binding cassette SUB-family B member 10, mitoc | 100.0 | |
| 3b60_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 100.0 | |
| 3nh6_A | 306 | ATP-binding cassette SUB-family B member 6, mitoc; | 100.0 | |
| 2ff7_A | 247 | Alpha-hemolysin translocation ATP-binding protein | 100.0 | |
| 2ghi_A | 260 | Transport protein; multidrug resistance protein, M | 100.0 | |
| 2ixe_A | 271 | Antigen peptide transporter 1; ABC ATPase, hydrola | 100.0 | |
| 1mv5_A | 243 | LMRA, multidrug resistance ABC transporter ATP-bin | 100.0 | |
| 3gd7_A | 390 | Fusion complex of cystic fibrosis transmembrane co | 100.0 | |
| 2pze_A | 229 | Cystic fibrosis transmembrane conductance regulat; | 100.0 | |
| 2cbz_A | 237 | Multidrug resistance-associated protein 1; ABC pro | 100.0 | |
| 3tui_C | 366 | Methionine import ATP-binding protein METN; ABC-tr | 100.0 | |
| 3gfo_A | 275 | Cobalt import ATP-binding protein CBIO 1; structur | 100.0 | |
| 3tif_A | 235 | Uncharacterized ABC transporter ATP-binding prote; | 100.0 | |
| 1ji0_A | 240 | ABC transporter; ATP binding protein, structural g | 100.0 | |
| 3fvq_A | 359 | Fe(3+) IONS import ATP-binding protein FBPC; nucle | 100.0 | |
| 2olj_A | 263 | Amino acid ABC transporter; ABC domain, ATPase, hy | 100.0 | |
| 4g1u_C | 266 | Hemin import ATP-binding protein HMUV; membrane tr | 100.0 | |
| 3rlf_A | 381 | Maltose/maltodextrin import ATP-binding protein M; | 100.0 | |
| 1vpl_A | 256 | ABC transporter, ATP-binding protein; TM0544, stru | 100.0 | |
| 1b0u_A | 262 | Histidine permease; ABC transporter, transport pro | 100.0 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 100.0 | |
| 1g6h_A | 257 | High-affinity branched-chain amino acid transport | 100.0 | |
| 2pcj_A | 224 | ABC transporter, lipoprotein-releasing system ATP- | 100.0 | |
| 2bbs_A | 290 | Cystic fibrosis transmembrane conductance regulato | 100.0 | |
| 2yyz_A | 359 | Sugar ABC transporter, ATP-binding protein; sugar | 100.0 | |
| 2yz2_A | 266 | Putative ABC transporter ATP-binding protein TM_0; | 100.0 | |
| 2ihy_A | 279 | ABC transporter, ATP-binding protein; ATPase, ABC | 100.0 | |
| 2onk_A | 240 | Molybdate/tungstate ABC transporter, ATP-binding p | 100.0 | |
| 2it1_A | 362 | 362AA long hypothetical maltose/maltodextrin trans | 100.0 | |
| 1v43_A | 372 | Sugar-binding transport ATP-binding protein; ATPas | 100.0 | |
| 1z47_A | 355 | CYSA, putative ABC-transporter ATP-binding protein | 100.0 | |
| 3d31_A | 348 | Sulfate/molybdate ABC transporter, ATP-binding pro | 100.0 | |
| 2qi9_C | 249 | Vitamin B12 import ATP-binding protein BTUD; inner | 100.0 | |
| 1oxx_K | 353 | GLCV, glucose, ABC transporter, ATP binding protei | 100.0 | |
| 1g29_1 | 372 | MALK, maltose transport protein MALK; ATPase, acti | 100.0 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 100.0 | |
| 2d2e_A | 250 | SUFC protein; ABC-ATPase, SUF protein, 310-helix, | 100.0 | |
| 2pjz_A | 263 | Hypothetical protein ST1066; ATP binding protein, | 100.0 | |
| 2zu0_C | 267 | Probable ATP-dependent transporter SUFC; iron-sulf | 100.0 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 100.0 | |
| 2nq2_C | 253 | Hypothetical ABC transporter ATP-binding protein H | 100.0 | |
| 1sgw_A | 214 | Putative ABC transporter; structural genomics, P p | 100.0 | |
| 3ux8_A | 670 | Excinuclease ABC, A subunit; UVRA, nucleotide exci | 100.0 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 100.0 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 100.0 | |
| 3nh6_A | 306 | ATP-binding cassette SUB-family B member 6, mitoc; | 100.0 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 99.97 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 99.97 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 99.97 | |
| 2v9p_A | 305 | Replication protein E1; AAA+ molecular motor, DNA | 99.97 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 99.97 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 99.97 | |
| 3ux8_A | 670 | Excinuclease ABC, A subunit; UVRA, nucleotide exci | 99.96 | |
| 3pih_A | 916 | Uvrabc system protein A; hydrolase, ABC ATPase, DN | 99.96 | |
| 2vf7_A | 842 | UVRA2, excinuclease ABC, subunit A.; DNA-binding p | 99.96 | |
| 2vf7_A | 842 | UVRA2, excinuclease ABC, subunit A.; DNA-binding p | 99.95 | |
| 2r6f_A | 972 | Excinuclease ABC subunit A; UVRA, nucleotide excis | 99.94 | |
| 4aby_A | 415 | DNA repair protein RECN; hydrolase, double strand | 99.94 | |
| 2ygr_A | 993 | Uvrabc system protein A; hydrolase, nucleotide exc | 99.94 | |
| 2npi_A | 460 | Protein CLP1; CLP1-PCF11 complex, ATP binding, ter | 99.94 | |
| 2ff7_A | 247 | Alpha-hemolysin translocation ATP-binding protein | 99.93 | |
| 1mv5_A | 243 | LMRA, multidrug resistance ABC transporter ATP-bin | 99.92 | |
| 2ghi_A | 260 | Transport protein; multidrug resistance protein, M | 99.92 | |
| 2ixe_A | 271 | Antigen peptide transporter 1; ABC ATPase, hydrola | 99.92 | |
| 3pih_A | 916 | Uvrabc system protein A; hydrolase, ABC ATPase, DN | 99.91 | |
| 1e69_A | 322 | Chromosome segregation SMC protein; structural mai | 99.91 | |
| 2r6f_A | 972 | Excinuclease ABC subunit A; UVRA, nucleotide excis | 99.91 | |
| 3gd7_A | 390 | Fusion complex of cystic fibrosis transmembrane co | 99.91 | |
| 3b85_A | 208 | Phosphate starvation-inducible protein; PHOH2, ATP | 99.9 | |
| 2ygr_A | 993 | Uvrabc system protein A; hydrolase, nucleotide exc | 99.89 | |
| 4gp7_A | 171 | Metallophosphoesterase; polynucleotide kinase phos | 99.87 | |
| 3qf7_A | 365 | RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1. | 99.87 | |
| 2pze_A | 229 | Cystic fibrosis transmembrane conductance regulat; | 99.87 | |
| 3tif_A | 235 | Uncharacterized ABC transporter ATP-binding prote; | 99.87 | |
| 1z6g_A | 218 | Guanylate kinase; structural genomics, SGC, struct | 99.86 | |
| 1ye8_A | 178 | Protein THEP1, hypothetical UPF0334 kinase-like pr | 99.86 | |
| 2cbz_A | 237 | Multidrug resistance-associated protein 1; ABC pro | 99.86 | |
| 3gfo_A | 275 | Cobalt import ATP-binding protein CBIO 1; structur | 99.85 | |
| 4g1u_C | 266 | Hemin import ATP-binding protein HMUV; membrane tr | 99.85 | |
| 1ji0_A | 240 | ABC transporter; ATP binding protein, structural g | 99.85 | |
| 3tui_C | 366 | Methionine import ATP-binding protein METN; ABC-tr | 99.85 | |
| 2pt7_A | 330 | CAG-ALFA; ATPase, protein-protein complex, type IV | 99.85 | |
| 2olj_A | 263 | Amino acid ABC transporter; ABC domain, ATPase, hy | 99.84 | |
| 1vpl_A | 256 | ABC transporter, ATP-binding protein; TM0544, stru | 99.84 | |
| 2yz2_A | 266 | Putative ABC transporter ATP-binding protein TM_0; | 99.84 | |
| 2pcj_A | 224 | ABC transporter, lipoprotein-releasing system ATP- | 99.84 | |
| 2qi9_C | 249 | Vitamin B12 import ATP-binding protein BTUD; inner | 99.84 | |
| 1sgw_A | 214 | Putative ABC transporter; structural genomics, P p | 99.84 | |
| 2ihy_A | 279 | ABC transporter, ATP-binding protein; ATPase, ABC | 99.84 | |
| 1g6h_A | 257 | High-affinity branched-chain amino acid transport | 99.83 | |
| 1b0u_A | 262 | Histidine permease; ABC transporter, transport pro | 99.83 | |
| 3fvq_A | 359 | Fe(3+) IONS import ATP-binding protein FBPC; nucle | 99.83 | |
| 3rlf_A | 381 | Maltose/maltodextrin import ATP-binding protein M; | 99.83 | |
| 1tq4_A | 413 | IIGP1, interferon-inducible GTPase; interferon gam | 99.82 | |
| 2yyz_A | 359 | Sugar ABC transporter, ATP-binding protein; sugar | 99.82 | |
| 2it1_A | 362 | 362AA long hypothetical maltose/maltodextrin trans | 99.82 | |
| 1z47_A | 355 | CYSA, putative ABC-transporter ATP-binding protein | 99.82 | |
| 1v43_A | 372 | Sugar-binding transport ATP-binding protein; ATPas | 99.82 | |
| 3d31_A | 348 | Sulfate/molybdate ABC transporter, ATP-binding pro | 99.81 | |
| 2dpy_A | 438 | FLII, flagellum-specific ATP synthase; beta barrel | 99.81 | |
| 2v9p_A | 305 | Replication protein E1; AAA+ molecular motor, DNA | 99.81 | |
| 2bbs_A | 290 | Cystic fibrosis transmembrane conductance regulato | 99.81 | |
| 2onk_A | 240 | Molybdate/tungstate ABC transporter, ATP-binding p | 99.81 | |
| 1oxx_K | 353 | GLCV, glucose, ABC transporter, ATP binding protei | 99.81 | |
| 2d2e_A | 250 | SUFC protein; ABC-ATPase, SUF protein, 310-helix, | 99.8 | |
| 2o5v_A | 359 | DNA replication and repair protein RECF; ABC ATPas | 99.8 | |
| 1g29_1 | 372 | MALK, maltose transport protein MALK; ATPase, acti | 99.8 | |
| 2pjz_A | 263 | Hypothetical protein ST1066; ATP binding protein, | 99.78 | |
| 3sop_A | 270 | Neuronal-specific septin-3; hydrolase; HET: GDP; 2 | 99.78 | |
| 3aez_A | 312 | Pantothenate kinase; transferase, homodimer, COA b | 99.77 | |
| 2gza_A | 361 | Type IV secretion system protein VIRB11; ATPase, h | 99.77 | |
| 3b9q_A | 302 | Chloroplast SRP receptor homolog, alpha subunit CP | 99.77 | |
| 2zu0_C | 267 | Probable ATP-dependent transporter SUFC; iron-sulf | 99.77 | |
| 2nq2_C | 253 | Hypothetical ABC transporter ATP-binding protein H | 99.77 | |
| 2f1r_A | 171 | Molybdopterin-guanine dinucleotide biosynthesis pr | 99.75 | |
| 1znw_A | 207 | Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans | 99.74 | |
| 2og2_A | 359 | Putative signal recognition particle receptor; nuc | 99.74 | |
| 2eyu_A | 261 | Twitching motility protein PILT; pilus retraction | 99.73 | |
| 2i3b_A | 189 | HCR-ntpase, human cancer-related ntpase; AAA, ross | 99.73 | |
| 2obl_A | 347 | ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O | 99.71 | |
| 2ewv_A | 372 | Twitching motility protein PILT; pilus retraction | 99.71 | |
| 4ad8_A | 517 | DNA repair protein RECN; DNA binding protein, ATPa | 99.7 | |
| 3qkt_A | 339 | DNA double-strand break repair RAD50 ATPase; RECA- | 99.69 | |
| 1cr0_A | 296 | DNA primase/helicase; RECA-type protein fold, tran | 99.68 | |
| 2o8b_B | 1022 | DNA mismatch repair protein MSH6; DNA damage respo | 99.67 | |
| 1tf7_A | 525 | KAIC; homohexamer, hexamer, circadian clock protei | 99.66 | |
| 1tf7_A | 525 | KAIC; homohexamer, hexamer, circadian clock protei | 99.65 | |
| 1lvg_A | 198 | Guanylate kinase, GMP kinase; transferase; HET: AD | 99.65 | |
| 2jeo_A | 245 | Uridine-cytidine kinase 1; UCK, transferase, ATP-b | 99.64 | |
| 1f2t_B | 148 | RAD50 ABC-ATPase; DNA double-strand break repair, | 99.63 | |
| 1lw7_A | 365 | Transcriptional regulator NADR; NMN, NMN adenylyl | 99.62 | |
| 1ewq_A | 765 | DNA mismatch repair protein MUTS; multiple domains | 99.61 | |
| 1pzn_A | 349 | RAD51, DNA repair and recombination protein RAD51, | 99.61 | |
| 3thx_A | 934 | DNA mismatch repair protein MSH2; ABC family ATPas | 99.61 | |
| 3asz_A | 211 | Uridine kinase; cytidine phosphorylation, transfer | 99.6 | |
| 1w1w_A | 430 | Structural maintenance of chromosome 1; cohesin, c | 99.59 | |
| 4a74_A | 231 | DNA repair and recombination protein RADA; hydrola | 99.59 | |
| 3szr_A | 608 | Interferon-induced GTP-binding protein MX1; interf | 99.58 | |
| 3jvv_A | 356 | Twitching mobility protein; hexameric P-loop ATPas | 99.56 | |
| 1rj9_A | 304 | FTSY, signal recognition protein; SRP-GTPase domai | 99.54 | |
| 2gza_A | 361 | Type IV secretion system protein VIRB11; ATPase, h | 99.54 | |
| 2qag_C | 418 | Septin-7; cell cycle, cell division, GTP-binding, | 99.53 | |
| 2ehv_A | 251 | Hypothetical protein PH0186; KAIC, RECA ATPase, un | 99.53 | |
| 3kta_B | 173 | Chromosome segregation protein SMC; structural mai | 99.53 | |
| 1pui_A | 210 | ENGB, probable GTP-binding protein ENGB; structura | 99.52 | |
| 2qnr_A | 301 | Septin-2, protein NEDD5; structural genomics conso | 99.51 | |
| 1odf_A | 290 | YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser | 99.51 | |
| 2w0m_A | 235 | SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus | 99.48 | |
| 3thx_B | 918 | DNA mismatch repair protein MSH3; ABC family ATPas | 99.47 | |
| 2f1r_A | 171 | Molybdopterin-guanine dinucleotide biosynthesis pr | 99.45 | |
| 1wb9_A | 800 | DNA mismatch repair protein MUTS; DNA-binding, ATP | 99.43 | |
| 1nlf_A | 279 | Regulatory protein REPA; replicative DNA helicase | 99.42 | |
| 1s96_A | 219 | Guanylate kinase, GMP kinase; E.coli, dimer, SAD, | 99.42 | |
| 1nij_A | 318 | Hypothetical protein YJIA; structural genomics, P- | 99.39 | |
| 2pt7_A | 330 | CAG-ALFA; ATPase, protein-protein complex, type IV | 99.38 | |
| 3c8u_A | 208 | Fructokinase; YP_612366.1, putative fructose trans | 99.38 | |
| 1htw_A | 158 | HI0065; nucleotide-binding fold, structural genomi | 99.38 | |
| 2qag_B | 427 | Septin-6, protein NEDD5; cell cycle, cell division | 99.37 | |
| 2cvh_A | 220 | DNA repair and recombination protein RADB; filamen | 99.37 | |
| 1z6g_A | 218 | Guanylate kinase; structural genomics, SGC, struct | 99.36 | |
| 2eyu_A | 261 | Twitching motility protein PILT; pilus retraction | 99.35 | |
| 1lvg_A | 198 | Guanylate kinase, GMP kinase; transferase; HET: AD | 99.34 | |
| 1zp6_A | 191 | Hypothetical protein ATU3015; alpha-beta protein., | 99.34 | |
| 1lw7_A | 365 | Transcriptional regulator NADR; NMN, NMN adenylyl | 99.33 | |
| 3aez_A | 312 | Pantothenate kinase; transferase, homodimer, COA b | 99.31 | |
| 2ewv_A | 372 | Twitching motility protein PILT; pilus retraction | 99.3 | |
| 1n0w_A | 243 | DNA repair protein RAD51 homolog 1; DNA repair, ho | 99.27 | |
| 2dpy_A | 438 | FLII, flagellum-specific ATP synthase; beta barrel | 99.26 | |
| 2yhs_A | 503 | FTSY, cell division protein FTSY; cell cycle, prot | 99.24 | |
| 2npi_A | 460 | Protein CLP1; CLP1-PCF11 complex, ATP binding, ter | 99.23 | |
| 2qm8_A | 337 | GTPase/ATPase; G protein, G3E, metallochaperone, c | 99.2 | |
| 1htw_A | 158 | HI0065; nucleotide-binding fold, structural genomi | 99.19 | |
| 3sop_A | 270 | Neuronal-specific septin-3; hydrolase; HET: GDP; 2 | 99.18 | |
| 1p9r_A | 418 | General secretion pathway protein E; bacterial typ | 99.17 | |
| 2bdt_A | 189 | BH3686; alpha-beta protein, structural genomics, P | 99.16 | |
| 3auy_A | 371 | DNA double-strand break repair RAD50 ATPase; DNA r | 99.16 | |
| 2oap_1 | 511 | GSPE-2, type II secretion system protein; hexameri | 99.16 | |
| 3b9q_A | 302 | Chloroplast SRP receptor homolog, alpha subunit CP | 99.14 | |
| 2rcn_A | 358 | Probable GTPase ENGC; YJEQ, circularly permuted, G | 99.14 | |
| 2qag_B | 427 | Septin-6, protein NEDD5; cell cycle, cell division | 99.14 | |
| 2bbw_A | 246 | Adenylate kinase 4, AK4; nucleotide kinase, nucleo | 99.13 | |
| 1tq4_A | 413 | IIGP1, interferon-inducible GTPase; interferon gam | 99.12 | |
| 3lda_A | 400 | DNA repair protein RAD51; DNA binding protein, ATP | 99.11 | |
| 2kjq_A | 149 | DNAA-related protein; solution structure, NESG, st | 99.09 | |
| 1sxj_E | 354 | Activator 1 40 kDa subunit; clamp loader, processi | 99.09 | |
| 3b85_A | 208 | Phosphate starvation-inducible protein; PHOH2, ATP | 99.09 | |
| 3e70_C | 328 | DPA, signal recognition particle receptor; FTSY, S | 99.09 | |
| 4e22_A | 252 | Cytidylate kinase; P-loop, CMP/ATP binding, transf | 99.08 | |
| 2qm8_A | 337 | GTPase/ATPase; G protein, G3E, metallochaperone, c | 99.08 | |
| 2og2_A | 359 | Putative signal recognition particle receptor; nuc | 99.07 | |
| 1sq5_A | 308 | Pantothenate kinase; P-loop, transferase; HET: PAU | 99.06 | |
| 2yhs_A | 503 | FTSY, cell division protein FTSY; cell cycle, prot | 99.06 | |
| 1znw_A | 207 | Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans | 99.04 | |
| 1u0l_A | 301 | Probable GTPase ENGC; permutation, OB-fold, zinc-f | 99.0 | |
| 3ec2_A | 180 | DNA replication protein DNAC; helicase loader, rep | 98.99 | |
| 2jeo_A | 245 | Uridine-cytidine kinase 1; UCK, transferase, ATP-b | 98.99 | |
| 1sq5_A | 308 | Pantothenate kinase; P-loop, transferase; HET: PAU | 98.97 | |
| 2x8a_A | 274 | Nuclear valosin-containing protein-like; nuclear p | 98.96 | |
| 2yv5_A | 302 | YJEQ protein; hydrolase, GTPase, permutation, stru | 98.95 | |
| 1rj9_A | 304 | FTSY, signal recognition protein; SRP-GTPase domai | 98.95 | |
| 3szr_A | 608 | Interferon-induced GTP-binding protein MX1; interf | 98.91 | |
| 3euj_A | 483 | Chromosome partition protein MUKB, linker; MUKB, M | 98.9 | |
| 3lnc_A | 231 | Guanylate kinase, GMP kinase; ALS collaborative cr | 98.85 | |
| 3asz_A | 211 | Uridine kinase; cytidine phosphorylation, transfer | 98.84 | |
| 3ney_A | 197 | 55 kDa erythrocyte membrane protein; structural ge | 98.84 | |
| 2yv5_A | 302 | YJEQ protein; hydrolase, GTPase, permutation, stru | 98.84 | |
| 1udx_A | 416 | The GTP-binding protein OBG; TGS domain, riken str | 98.83 | |
| 1cke_A | 227 | CK, MSSA, protein (cytidine monophosphate kinase); | 98.82 | |
| 1p9r_A | 418 | General secretion pathway protein E; bacterial typ | 98.82 | |
| 2obl_A | 347 | ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O | 98.81 | |
| 1s96_A | 219 | Guanylate kinase, GMP kinase; E.coli, dimer, SAD, | 98.81 | |
| 1kgd_A | 180 | CASK, peripheral plasma membrane CASK; maguk, guan | 98.8 | |
| 3e70_C | 328 | DPA, signal recognition particle receptor; FTSY, S | 98.77 | |
| 4aby_A | 415 | DNA repair protein RECN; hydrolase, double strand | 98.77 | |
| 2qag_C | 418 | Septin-7; cell cycle, cell division, GTP-binding, | 98.77 | |
| 1u0l_A | 301 | Probable GTPase ENGC; permutation, OB-fold, zinc-f | 98.77 | |
| 1pui_A | 210 | ENGB, probable GTP-binding protein ENGB; structura | 98.76 | |
| 1cke_A | 227 | CK, MSSA, protein (cytidine monophosphate kinase); | 98.75 | |
| 3euj_A | 483 | Chromosome partition protein MUKB, linker; MUKB, M | 98.75 | |
| 3lnc_A | 231 | Guanylate kinase, GMP kinase; ALS collaborative cr | 98.74 | |
| 3tr0_A | 205 | Guanylate kinase, GMP kinase; purines, pyrimidines | 98.74 | |
| 2rcn_A | 358 | Probable GTPase ENGC; YJEQ, circularly permuted, G | 98.74 | |
| 1ls1_A | 295 | Signal recognition particle protein; FFH, SRP54, S | 98.72 | |
| 1zp6_A | 191 | Hypothetical protein ATU3015; alpha-beta protein., | 98.72 | |
| 1odf_A | 290 | YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser | 98.71 | |
| 1vma_A | 306 | Cell division protein FTSY; TM0570, structural gen | 98.7 | |
| 1t9h_A | 307 | YLOQ, probable GTPase ENGC; N-terminal beta-barrel | 98.69 | |
| 1pzn_A | 349 | RAD51, DNA repair and recombination protein RAD51, | 98.69 | |
| 2px0_A | 296 | Flagellar biosynthesis protein FLHF; SRP GTPase, f | 98.69 | |
| 2oap_1 | 511 | GSPE-2, type II secretion system protein; hexameri | 98.68 | |
| 1t9h_A | 307 | YLOQ, probable GTPase ENGC; N-terminal beta-barrel | 98.64 | |
| 4e22_A | 252 | Cytidylate kinase; P-loop, CMP/ATP binding, transf | 98.63 | |
| 3c8u_A | 208 | Fructokinase; YP_612366.1, putative fructose trans | 98.62 | |
| 1in4_A | 334 | RUVB, holliday junction DNA helicase RUVB; AAA+-cl | 98.61 | |
| 1iy2_A | 278 | ATP-dependent metalloprotease FTSH; AAA domain fol | 98.61 | |
| 4a74_A | 231 | DNA repair and recombination protein RADA; hydrola | 98.59 | |
| 2i3b_A | 189 | HCR-ntpase, human cancer-related ntpase; AAA, ross | 98.59 | |
| 1qhl_A | 227 | Protein (cell division protein MUKB); SMC, chromos | 98.58 | |
| 1ixz_A | 254 | ATP-dependent metalloprotease FTSH; AAA domain fol | 98.57 | |
| 3a00_A | 186 | Guanylate kinase, GMP kinase; domain movement, dim | 98.56 | |
| 3jvv_A | 356 | Twitching mobility protein; hexameric P-loop ATPas | 98.55 | |
| 3tr0_A | 205 | Guanylate kinase, GMP kinase; purines, pyrimidines | 98.55 | |
| 2zr9_A | 349 | Protein RECA, recombinase A; recombination, RECA m | 98.54 | |
| 3a00_A | 186 | Guanylate kinase, GMP kinase; domain movement, dim | 98.53 | |
| 2qnr_A | 301 | Septin-2, protein NEDD5; structural genomics conso | 98.52 | |
| 1ni3_A | 392 | YCHF GTPase, YCHF GTP-binding protein; structural | 98.52 | |
| 2x8a_A | 274 | Nuclear valosin-containing protein-like; nuclear p | 98.51 | |
| 2ius_A | 512 | DNA translocase FTSK; nucleotide-binding, chromoso | 98.5 | |
| 1nij_A | 318 | Hypothetical protein YJIA; structural genomics, P- | 98.5 | |
| 1qhl_A | 227 | Protein (cell division protein MUKB); SMC, chromos | 98.48 | |
| 3k1j_A | 604 | LON protease, ATP-dependent protease LON; ATP-bind | 98.48 | |
| 1oix_A | 191 | RAS-related protein RAB-11A; small G protein, intr | 98.47 | |
| 1e69_A | 322 | Chromosome segregation SMC protein; structural mai | 98.46 | |
| 2dr3_A | 247 | UPF0273 protein PH0284; RECA superfamily ATPase, h | 98.46 | |
| 4gp7_A | 171 | Metallophosphoesterase; polynucleotide kinase phos | 98.46 | |
| 2ehv_A | 251 | Hypothetical protein PH0186; KAIC, RECA ATPase, un | 98.43 | |
| 2j41_A | 207 | Guanylate kinase; GMP, GMK, transferase, ATP-bindi | 98.42 | |
| 2qt1_A | 207 | Nicotinamide riboside kinase 1; non-protein kinase | 98.41 | |
| 3ney_A | 197 | 55 kDa erythrocyte membrane protein; structural ge | 98.39 | |
| 1cr0_A | 296 | DNA primase/helicase; RECA-type protein fold, tran | 98.38 | |
| 2r6a_A | 454 | DNAB helicase, replicative helicase; replication, | 98.38 | |
| 3nwj_A | 250 | ATSK2; P loop, shikimate, nucleoside monophosphate | 98.36 | |
| 3uie_A | 200 | Adenylyl-sulfate kinase 1, chloroplastic; rossmann | 98.34 | |
| 4eun_A | 200 | Thermoresistant glucokinase; putative sugar kinase | 98.32 | |
| 2dy1_A | 665 | Elongation factor G; translocation, GTP complex, s | 98.32 | |
| 3tau_A | 208 | Guanylate kinase, GMP kinase; structural genomics, | 98.29 | |
| 1svm_A | 377 | Large T antigen; AAA+ fold, viral protein; HET: AT | 98.26 | |
| 1ye8_A | 178 | Protein THEP1, hypothetical UPF0334 kinase-like pr | 98.26 | |
| 3ice_A | 422 | Transcription termination factor RHO; transcriptio | 98.25 | |
| 1kgd_A | 180 | CASK, peripheral plasma membrane CASK; maguk, guan | 98.25 | |
| 2o8b_B | 1022 | DNA mismatch repair protein MSH6; DNA damage respo | 98.24 | |
| 3vaa_A | 199 | Shikimate kinase, SK; structural genomics, center | 98.23 | |
| 1zu4_A | 320 | FTSY; GTPase, signal recognition particle, SRP, re | 98.2 | |
| 1ewq_A | 765 | DNA mismatch repair protein MUTS; multiple domains | 98.2 | |
| 1iy2_A | 278 | ATP-dependent metalloprotease FTSH; AAA domain fol | 98.19 | |
| 2f9l_A | 199 | RAB11B, member RAS oncogene family; RAB11B GTPase, | 98.19 | |
| 2bdt_A | 189 | BH3686; alpha-beta protein, structural genomics, P | 98.19 | |
| 2ce7_A | 476 | Cell division protein FTSH; metalloprotease; HET: | 98.18 | |
| 1ixz_A | 254 | ATP-dependent metalloprotease FTSH; AAA domain fol | 98.18 | |
| 2qt1_A | 207 | Nicotinamide riboside kinase 1; non-protein kinase | 98.17 | |
| 2vp4_A | 230 | Deoxynucleoside kinase; ATP-binding, DNA synthesis | 98.13 | |
| 1in4_A | 334 | RUVB, holliday junction DNA helicase RUVB; AAA+-cl | 98.12 | |
| 2dy1_A | 665 | Elongation factor G; translocation, GTP complex, s | 98.12 | |
| 2bbw_A | 246 | Adenylate kinase 4, AK4; nucleotide kinase, nucleo | 98.1 | |
| 1n0w_A | 243 | DNA repair protein RAD51 homolog 1; DNA repair, ho | 98.08 | |
| 3nwj_A | 250 | ATSK2; P loop, shikimate, nucleoside monophosphate | 98.07 | |
| 2dhr_A | 499 | FTSH; AAA+ protein, hexameric Zn metalloprotease, | 98.05 | |
| 2qtf_A | 364 | Protein HFLX, GTP-binding protein; beta-alpha-barr | 98.03 | |
| 3t34_A | 360 | Dynamin-related protein 1A, linker, dynamin-relat | 98.01 | |
| 3cr8_A | 552 | Sulfate adenylyltranferase, adenylylsulfate kinase | 98.01 | |
| 3kta_A | 182 | Chromosome segregation protein SMC; structural mai | 98.0 | |
| 3lda_A | 400 | DNA repair protein RAD51; DNA binding protein, ATP | 98.0 | |
| 3vaa_A | 199 | Shikimate kinase, SK; structural genomics, center | 97.99 | |
| 4eun_A | 200 | Thermoresistant glucokinase; putative sugar kinase | 97.99 | |
| 3tau_A | 208 | Guanylate kinase, GMP kinase; structural genomics, | 97.98 | |
| 1svm_A | 377 | Large T antigen; AAA+ fold, viral protein; HET: AT | 97.98 | |
| 3uie_A | 200 | Adenylyl-sulfate kinase 1, chloroplastic; rossmann | 97.96 | |
| 1zu4_A | 320 | FTSY; GTPase, signal recognition particle, SRP, re | 97.95 | |
| 2j41_A | 207 | Guanylate kinase; GMP, GMK, transferase, ATP-bindi | 97.94 | |
| 3cr8_A | 552 | Sulfate adenylyltranferase, adenylylsulfate kinase | 97.91 | |
| 2w0m_A | 235 | SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus | 97.91 | |
| 3kta_A | 182 | Chromosome segregation protein SMC; structural mai | 97.86 | |
| 1knq_A | 175 | Gluconate kinase; ALFA/beta structure, transferase | 97.84 | |
| 3hr8_A | 356 | Protein RECA; alpha and beta proteins (A/B, A+B), | 97.82 | |
| 2kjq_A | 149 | DNAA-related protein; solution structure, NESG, st | 97.81 | |
| 3tqc_A | 321 | Pantothenate kinase; biosynthesis of cofactors, pr | 97.8 | |
| 1ls1_A | 295 | Signal recognition particle protein; FFH, SRP54, S | 97.73 | |
| 2e87_A | 357 | Hypothetical protein PH1320; GTP-binding, GTPase, | 97.71 | |
| 2xau_A | 773 | PRE-mRNA-splicing factor ATP-dependent RNA helica; | 97.71 | |
| 1rz3_A | 201 | Hypothetical protein rbstp0775; MCSG, structural g | 97.69 | |
| 4a1f_A | 338 | DNAB helicase, replicative DNA helicase; hydrolase | 97.68 | |
| 3ice_A | 422 | Transcription termination factor RHO; transcriptio | 97.66 | |
| 3tqc_A | 321 | Pantothenate kinase; biosynthesis of cofactors, pr | 97.64 | |
| 1jjv_A | 206 | Dephospho-COA kinase; P-loop nucleotide-binding fo | 97.62 | |
| 2z43_A | 324 | DNA repair and recombination protein RADA; archaea | 97.6 | |
| 1udx_A | 416 | The GTP-binding protein OBG; TGS domain, riken str | 97.55 | |
| 3m6a_A | 543 | ATP-dependent protease LA 1; alpha, beta, ATP-bind | 97.53 | |
| 2pez_A | 179 | Bifunctional 3'-phosphoadenosine 5'- phosphosulfat | 97.52 | |
| 2cvh_A | 220 | DNA repair and recombination protein RADB; filamen | 97.52 | |
| 1oix_A | 191 | RAS-related protein RAB-11A; small G protein, intr | 97.5 | |
| 1vma_A | 306 | Cell division protein FTSY; TM0570, structural gen | 97.49 | |
| 2ffh_A | 425 | Protein (FFH); SRP54, signal recognition particle, | 97.48 | |
| 1sxj_E | 354 | Activator 1 40 kDa subunit; clamp loader, processi | 97.45 | |
| 3kl4_A | 433 | SRP54, signal recognition 54 kDa protein; signal r | 97.45 | |
| 1rz3_A | 201 | Hypothetical protein rbstp0775; MCSG, structural g | 97.44 | |
| 3r20_A | 233 | Cytidylate kinase; structural genomics, seattle st | 97.43 | |
| 1wb9_A | 800 | DNA mismatch repair protein MUTS; DNA-binding, ATP | 97.42 | |
| 2qor_A | 204 | Guanylate kinase; phosphotransferase, purine metab | 97.41 | |
| 2dhr_A | 499 | FTSH; AAA+ protein, hexameric Zn metalloprotease, | 97.41 | |
| 2vp4_A | 230 | Deoxynucleoside kinase; ATP-binding, DNA synthesis | 97.34 | |
| 1f6b_A | 198 | SAR1; gtpases, N-terminal helix, Mg-containing com | 97.32 | |
| 1fnn_A | 389 | CDC6P, cell division control protein 6; ORC1, AAA | 97.32 | |
| 1ni3_A | 392 | YCHF GTPase, YCHF GTP-binding protein; structural | 97.31 | |
| 2f9l_A | 199 | RAB11B, member RAS oncogene family; RAB11B GTPase, | 97.31 | |
| 3thx_A | 934 | DNA mismatch repair protein MSH2; ABC family ATPas | 97.29 | |
| 3t34_A | 360 | Dynamin-related protein 1A, linker, dynamin-relat | 97.25 | |
| 1knq_A | 175 | Gluconate kinase; ALFA/beta structure, transferase | 97.24 | |
| 2p67_A | 341 | LAO/AO transport system kinase; ARGK, structural G | 97.24 | |
| 2px0_A | 296 | Flagellar biosynthesis protein FLHF; SRP GTPase, f | 97.23 | |
| 1mky_A | 439 | Probable GTP-binding protein ENGA; GTPase, DER, KH | 97.23 | |
| 3ec2_A | 180 | DNA replication protein DNAC; helicase loader, rep | 97.22 | |
| 2jaq_A | 205 | Deoxyguanosine kinase; transferase, deoxyribonucle | 97.21 | |
| 3m6a_A | 543 | ATP-dependent protease LA 1; alpha, beta, ATP-bind | 97.16 | |
| 1sxj_C | 340 | Activator 1 40 kDa subunit; clamp loader, processi | 97.16 | |
| 1uf9_A | 203 | TT1252 protein; P-loop, nucleotide binding domain, | 97.15 | |
| 1m7g_A | 211 | Adenylylsulfate kinase; APS kinase, transferase, s | 97.14 | |
| 3k1j_A | 604 | LON protease, ATP-dependent protease LON; ATP-bind | 97.13 | |
| 4ad8_A | 517 | DNA repair protein RECN; DNA binding protein, ATPa | 97.13 | |
| 2www_A | 349 | Methylmalonic aciduria type A protein, mitochondri | 97.11 | |
| 4eaq_A | 229 | DTMP kinase, thymidylate kinase; structural genomi | 97.08 | |
| 3bh0_A | 315 | DNAB-like replicative helicase; ATPase, replicatio | 97.05 | |
| 2pez_A | 179 | Bifunctional 3'-phosphoadenosine 5'- phosphosulfat | 97.05 | |
| 1m2o_B | 190 | GTP-binding protein SAR1, GTP binding protein; zin | 97.04 | |
| 3thx_B | 918 | DNA mismatch repair protein MSH3; ABC family ATPas | 96.99 | |
| 3b9p_A | 297 | CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc | 96.97 | |
| 1ypw_A | 806 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 96.97 | |
| 2gj8_A | 172 | MNME, tRNA modification GTPase TRME; G-domain dime | 96.97 | |
| 1kag_A | 173 | SKI, shikimate kinase I; transferase, structural g | 96.96 | |
| 3lxx_A | 239 | GTPase IMAP family member 4; structural genomics c | 96.96 | |
| 1v5w_A | 343 | DMC1, meiotic recombination protein DMC1/LIM15 hom | 96.9 | |
| 2ffh_A | 425 | Protein (FFH); SRP54, signal recognition particle, | 96.89 | |
| 2p67_A | 341 | LAO/AO transport system kinase; ARGK, structural G | 96.88 | |
| 1w1w_A | 430 | Structural maintenance of chromosome 1; cohesin, c | 96.86 | |
| 2o5v_A | 359 | DNA replication and repair protein RECF; ABC ATPas | 96.85 | |
| 2z4s_A | 440 | Chromosomal replication initiator protein DNAA; AA | 96.85 | |
| 1mky_A | 439 | Probable GTP-binding protein ENGA; GTPase, DER, KH | 96.84 | |
| 1lv7_A | 257 | FTSH; alpha/beta domain, four helix bundle, hydrol | 96.83 | |
| 1ega_A | 301 | Protein (GTP-binding protein ERA); GTPase, RNA-bin | 96.81 | |
| 2dr3_A | 247 | UPF0273 protein PH0284; RECA superfamily ATPase, h | 96.81 | |
| 2qby_A | 386 | CDC6 homolog 1, cell division control protein 6 ho | 96.78 | |
| 3llm_A | 235 | ATP-dependent RNA helicase A; alpha-beta-alpha, st | 96.77 | |
| 4eaq_A | 229 | DTMP kinase, thymidylate kinase; structural genomi | 96.76 | |
| 3hr8_A | 356 | Protein RECA; alpha and beta proteins (A/B, A+B), | 96.76 | |
| 2www_A | 349 | Methylmalonic aciduria type A protein, mitochondri | 96.74 | |
| 1f6b_A | 198 | SAR1; gtpases, N-terminal helix, Mg-containing com | 96.73 | |
| 1kag_A | 173 | SKI, shikimate kinase I; transferase, structural g | 96.72 | |
| 2qag_A | 361 | Septin-2, protein NEDD5; cell cycle, cell division | 96.71 | |
| 1j8m_F | 297 | SRP54, signal recognition 54 kDa protein; signalin | 96.71 | |
| 1ex7_A | 186 | Guanylate kinase; substrate-induced FIT, domain mo | 96.7 | |
| 2w58_A | 202 | DNAI, primosome component (helicase loader); ATP-b | 96.68 | |
| 1nlf_A | 279 | Regulatory protein REPA; replicative DNA helicase | 96.68 | |
| 2qtf_A | 364 | Protein HFLX, GTP-binding protein; beta-alpha-barr | 96.67 | |
| 2qor_A | 204 | Guanylate kinase; phosphotransferase, purine metab | 96.63 | |
| 1m7g_A | 211 | Adenylylsulfate kinase; APS kinase, transferase, s | 96.62 | |
| 3qf7_A | 365 | RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1. | 96.62 | |
| 3bos_A | 242 | Putative DNA replication factor; P-loop containing | 96.59 | |
| 1sxj_C | 340 | Activator 1 40 kDa subunit; clamp loader, processi | 96.58 | |
| 2yvu_A | 186 | Probable adenylyl-sulfate kinase; transferase, str | 96.55 | |
| 1y63_A | 184 | LMAJ004144AAA protein; structural genomics, protei | 96.52 | |
| 1f2t_A | 149 | RAD50 ABC-ATPase; DNA double-strand break repair, | 96.51 | |
| 1l8q_A | 324 | Chromosomal replication initiator protein DNAA; AA | 96.5 | |
| 1u94_A | 356 | RECA protein, recombinase A; homologous recombinat | 96.48 | |
| 1m2o_B | 190 | GTP-binding protein SAR1, GTP binding protein; zin | 96.47 | |
| 2p5t_B | 253 | PEZT; postsegregational killing system, phosphoryl | 96.46 | |
| 2ius_A | 512 | DNA translocase FTSK; nucleotide-binding, chromoso | 96.44 | |
| 3h4m_A | 285 | Proteasome-activating nucleotidase; ATPase, PAN, A | 96.43 | |
| 2gj8_A | 172 | MNME, tRNA modification GTPase TRME; G-domain dime | 96.4 | |
| 4dcu_A | 456 | GTP-binding protein ENGA; GTPase, GDP, protein bin | 96.39 | |
| 2ohf_A | 396 | Protein OLA1, GTP-binding protein 9; ATPase, GTPas | 96.39 | |
| 1lv7_A | 257 | FTSH; alpha/beta domain, four helix bundle, hydrol | 96.37 | |
| 1ypw_A | 806 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 96.37 | |
| 2dby_A | 368 | GTP-binding protein; GDP, structural genomics, NPP | 96.35 | |
| 1np6_A | 174 | Molybdopterin-guanine dinucleotide biosynthesis pr | 96.31 | |
| 3t61_A | 202 | Gluconokinase; PSI-biology, structural genomics, p | 96.31 | |
| 3cf0_A | 301 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 96.29 | |
| 3r20_A | 233 | Cytidylate kinase; structural genomics, seattle st | 96.25 | |
| 2wji_A | 165 | Ferrous iron transport protein B homolog; membrane | 96.25 | |
| 1f2t_A | 149 | RAD50 ABC-ATPase; DNA double-strand break repair, | 96.24 | |
| 1sxj_D | 353 | Activator 1 41 kDa subunit; clamp loader, processi | 96.17 | |
| 4fcw_A | 311 | Chaperone protein CLPB; AAA domain; HET: ADP; 2.35 | 96.15 | |
| 1j8m_F | 297 | SRP54, signal recognition 54 kDa protein; signalin | 96.14 | |
| 1jjv_A | 206 | Dephospho-COA kinase; P-loop nucleotide-binding fo | 96.12 | |
| 3n70_A | 145 | Transport activator; sigma-54, ntpase, PSI, MCSG, | 96.12 | |
| 1y63_A | 184 | LMAJ004144AAA protein; structural genomics, protei | 96.1 | |
| 2wjg_A | 188 | FEOB, ferrous iron transport protein B homolog; me | 96.09 | |
| 2ohf_A | 396 | Protein OLA1, GTP-binding protein 9; ATPase, GTPas | 95.94 | |
| 2yvu_A | 186 | Probable adenylyl-sulfate kinase; transferase, str | 95.91 | |
| 1ko7_A | 314 | HPR kinase/phosphatase; protein kinase, phosphotra | 95.85 | |
| 1np6_A | 174 | Molybdopterin-guanine dinucleotide biosynthesis pr | 95.73 | |
| 2wji_A | 165 | Ferrous iron transport protein B homolog; membrane | 95.72 | |
| 2zej_A | 184 | Dardarin, leucine-rich repeat kinase 2; parkinson' | 95.71 | |
| 2jaq_A | 205 | Deoxyguanosine kinase; transferase, deoxyribonucle | 95.71 | |
| 2vhj_A | 331 | Ntpase P4, P4; non- hydrolysable ATP analogue, hyd | 95.68 | |
| 1njg_A | 250 | DNA polymerase III subunit gamma; rossman-like fol | 95.66 | |
| 2p5t_B | 253 | PEZT; postsegregational killing system, phosphoryl | 95.65 | |
| 3ihw_A | 184 | Centg3; RAS, centaurin, GTPase, structural genomic | 95.64 | |
| 2ga8_A | 359 | Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn | 95.6 | |
| 2qag_A | 361 | Septin-2, protein NEDD5; cell cycle, cell division | 95.58 | |
| 2if2_A | 204 | Dephospho-COA kinase; alpha-beta protein, structur | 95.57 | |
| 3t61_A | 202 | Gluconokinase; PSI-biology, structural genomics, p | 95.57 | |
| 3qks_A | 203 | DNA double-strand break repair RAD50 ATPase; RECA- | 95.55 | |
| 3lxx_A | 239 | GTPase IMAP family member 4; structural genomics c | 95.53 | |
| 3cm0_A | 186 | Adenylate kinase; ATP-binding, cytoplasm, nucleoti | 95.51 | |
| 1jal_A | 363 | YCHF protein; nucleotide-binding fold, structural | 95.51 | |
| 2wjg_A | 188 | FEOB, ferrous iron transport protein B homolog; me | 95.51 | |
| 4ag6_A | 392 | VIRB4 ATPase, type IV secretory pathway VIRB4 comp | 95.49 | |
| 2qz4_A | 262 | Paraplegin; AAA+, SPG7, protease, ADP, structural | 95.41 | |
| 3dm5_A | 443 | SRP54, signal recognition 54 kDa protein; protein- | 95.4 | |
| 2q6t_A | 444 | DNAB replication FORK helicase; hydrolase; 2.90A { | 95.35 | |
| 1ega_A | 301 | Protein (GTP-binding protein ERA); GTPase, RNA-bin | 95.35 | |
| 1v5w_A | 343 | DMC1, meiotic recombination protein DMC1/LIM15 hom | 95.3 | |
| 1qhx_A | 178 | CPT, protein (chloramphenicol phosphotransferase); | 95.3 | |
| 1fzq_A | 181 | ADP-ribosylation factor-like protein 3; protein-GD | 95.28 | |
| 2z43_A | 324 | DNA repair and recombination protein RADA; archaea | 95.27 | |
| 2zej_A | 184 | Dardarin, leucine-rich repeat kinase 2; parkinson' | 95.26 | |
| 1xjc_A | 169 | MOBB protein homolog; structural genomics, midwest | 95.25 | |
| 2b8t_A | 223 | Thymidine kinase; deoxyribonucleoside kinase, zinc | 95.24 | |
| 3d8b_A | 357 | Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s | 95.24 | |
| 2ga8_A | 359 | Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn | 95.2 | |
| 1gtv_A | 214 | TMK, thymidylate kinase; transferase, transferase | 95.19 | |
| 3trf_A | 185 | Shikimate kinase, SK; amino acid biosynthesis, tra | 95.14 | |
| 3kb2_A | 173 | SPBC2 prophage-derived uncharacterized protein YOR | 95.11 | |
| 2if2_A | 204 | Dephospho-COA kinase; alpha-beta protein, structur | 95.1 | |
| 2v1u_A | 387 | Cell division control protein 6 homolog; DNA repli | 95.04 | |
| 2zr9_A | 349 | Protein RECA, recombinase A; recombination, RECA m | 95.02 | |
| 1qhx_A | 178 | CPT, protein (chloramphenicol phosphotransferase); | 95.02 | |
| 3uk6_A | 368 | RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding | 95.0 | |
| 3qks_A | 203 | DNA double-strand break repair RAD50 ATPase; RECA- | 94.98 | |
| 3kl4_A | 433 | SRP54, signal recognition 54 kDa protein; signal r | 94.97 | |
| 3t15_A | 293 | Ribulose bisphosphate carboxylase/oxygenase activ | 94.95 | |
| 1gvn_B | 287 | Zeta; postsegregational killing system, plasmid; 1 | 94.93 | |
| 1gvn_B | 287 | Zeta; postsegregational killing system, plasmid; 1 | 94.89 | |
| 1vht_A | 218 | Dephospho-COA kinase; structural genomics, transfe | 94.89 | |
| 1kht_A | 192 | Adenylate kinase; phosphotransferase, signaling pr | 94.88 | |
| 1xwi_A | 322 | SKD1 protein; VPS4B, AAA ATPase, protein transport | 94.87 | |
| 3syl_A | 309 | Protein CBBX; photosynthesis, rubisco activase, AA | 94.84 | |
| 3ihw_A | 184 | Centg3; RAS, centaurin, GTPase, structural genomic | 94.83 | |
| 2v54_A | 204 | DTMP kinase, thymidylate kinase; nucleotide biosyn | 94.81 | |
| 3cm0_A | 186 | Adenylate kinase; ATP-binding, cytoplasm, nucleoti | 94.76 | |
| 3lw7_A | 179 | Adenylate kinase related protein (ADKA-like); AMP, | 94.73 | |
| 1q3t_A | 236 | Cytidylate kinase; nucleotide monophosphate kinase | 94.72 | |
| 2chg_A | 226 | Replication factor C small subunit; DNA-binding pr | 94.71 | |
| 1ex7_A | 186 | Guanylate kinase; substrate-induced FIT, domain mo | 94.69 | |
| 2bwj_A | 199 | Adenylate kinase 5; phosphoryl transfer reaction, | 94.66 | |
| 2rhm_A | 193 | Putative kinase; P-loop containing nucleoside trip | 94.65 | |
| 3iij_A | 180 | Coilin-interacting nuclear ATPase protein; alpha a | 94.63 | |
| 3cbq_A | 195 | GTP-binding protein REM 2; FLJ38964A, structural g | 94.62 | |
| 4ag6_A | 392 | VIRB4 ATPase, type IV secretory pathway VIRB4 comp | 94.6 | |
| 1jal_A | 363 | YCHF protein; nucleotide-binding fold, structural | 94.54 | |
| 2lkc_A | 178 | Translation initiation factor IF-2; NMR {Geobacill | 94.51 | |
| 3kb2_A | 173 | SPBC2 prophage-derived uncharacterized protein YOR | 94.51 | |
| 2c95_A | 196 | Adenylate kinase 1; transferase, AP4A, nucleotide | 94.49 | |
| 3lxw_A | 247 | GTPase IMAP family member 1; immunity, structural | 94.49 | |
| 2r6a_A | 454 | DNAB helicase, replicative helicase; replication, | 94.42 | |
| 1xp8_A | 366 | RECA protein, recombinase A; recombination, radior | 94.42 | |
| 1uf9_A | 203 | TT1252 protein; P-loop, nucleotide binding domain, | 94.39 |
| >4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-163 Score=1623.11 Aligned_cols=1130 Identities=35% Similarity=0.609 Sum_probs=959.9
Q ss_pred cccccchHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccC-----------------CCchhhHHH
Q 000984 39 EKTESVPFYKLFTFADSADTALMIIGSIGAIGNGLCLPLMTLLFGDLINTFGDN-----------------QNNSETVDK 101 (1198)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~ 101 (1198)
+...+++++++|+|++++++++++++++++++.+++.|++++++|.+++.+... .....+.+.
T Consensus 55 ~~~~~v~~~~Lfrya~~~d~~l~~~g~~~a~~~G~~~p~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (1321)
T 4f4c_A 55 EVVNKVSIPQLYRYTTTLEKLLLFIGTLVAVITGAGLPLMSILQGKVSQAFINEQIVINNNGSTFLPTGQNYTKTDFEHD 134 (1321)
T ss_dssp CCSSCCCHHHHTTTCCHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHTTSCBCSSTTCBCCHHHHHHH
T ss_pred cccCCCCHHHHhhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccccccchHHHHHH
Confidence 334478999999999999999999999999999999999999999988865311 011123344
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhccCCcchHHHHHHhHHHHHHHHHHHH
Q 000984 102 VSKVAVKFVYLGIGSGIASFLQVTCWMITGERQATRIRGLYLKTILRQDVAFFDNETNTGEVVGRMSGDTVLIQDAMGEK 181 (1198)
Q Consensus 102 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~f~~~~~~G~i~~r~s~D~~~i~~~~~~~ 181 (1198)
+..+++++++++++.+++.+++.+++.+.+.|+..++|.+++++++++|++|||+. ++|++++|+++|++.+++.+...
T Consensus 135 ~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~~r~~~~lR~~~~~~ll~~~~~~fd~~-~~G~l~sr~~~D~~~i~~~~~~~ 213 (1321)
T 4f4c_A 135 VMNVVWSYAAMTVGMWAAGQITVTCYLYVAEQMNNRLRREFVKSILRQEISWFDTN-HSGTLATKLFDNLERVKEGTGDK 213 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHT-CCTTHHHHHHHHHHHHHHTSSHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCC-ChHHHHHHHHHHHHHHHHHHHHH
Confidence 55666778888899999999999999999999999999999999999999999974 99999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCc
Q 000984 182 VGKFLQLMATFLGGFLIAFIKGWLLTLVMLSSIPLLAMSGGVMAIMISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTG 261 (1198)
Q Consensus 182 ~~~~~~~~~~~i~~~i~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~ 261 (1198)
+..++..+.+++++++++++++|.+++++++.+|+++++..++.+..++..++.++..+++.+.+.|.++|+++||+|++
T Consensus 214 l~~~~~~~~~~i~~~i~~~~~~~~l~lv~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~ 293 (1321)
T 4f4c_A 214 IGMAFQYLSQFITGFIVAFTHSWQLTLVMLAVTPIQALCGFAIAKSMSTFAIRETLRYAKAGKVVEETISSIRTVVSLNG 293 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 000984 262 EKQAMSNYKKFLVTAYKSGVQEGLAAGIGLGMVMLIVFCSYALSVWYGGKLILEEGYNGGQVVNVMVAVLTGSMSLGEAS 341 (1198)
Q Consensus 262 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~l~~~~~l~~~~ 341 (1198)
|+.+.++|.+..++..+...+.....++...+..++..+.+++++|+|..++..+.++.|.+++++.++.....++..+.
T Consensus 294 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~~~~~~~~~~~~~~~l~~~~ 373 (1321)
T 4f4c_A 294 LRYELERYSTAVEEAKKAGVLKGLFLGISFGAMQASNFISFALAFYIGVGWVHDGSLNFGDMLTTFSSVMMGSMALGLAG 373 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999888888888888888888888888888899999999999999999999998888888888999989
Q ss_pred HHHHHHHHHHHHHHHHHHHHccCCCCCccCCCCcccCCCcccEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCC
Q 000984 342 PCLSAFGAGQAAAFKMFETINRKPEIDAYDTKGKILDDIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQS 421 (1198)
Q Consensus 342 ~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~ 421 (1198)
+.+..+..+..++.|++++++.+|+.+........+.+.+|.|+|+||+|+||+++++++|+|+||+|++||++||||||
T Consensus 374 ~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~~~~~~g~I~~~nvsF~Y~~~~~~~vL~~isl~i~~G~~vaivG~s 453 (1321)
T 4f4c_A 374 PQLAVLGTAQGAASGIYEVLDRKPVIDSSSKAGRKDMKIKGDITVENVHFTYPSRPDVPILRGMNLRVNAGQTVALVGSS 453 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTSCCSSCSSSCCCCCCCCCCCEEEEEEEECCSSSTTSCSEEEEEEEECTTCEEEEEECS
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCccccccccccccCCCCCCcEEEEEeeeeCCCCCCCceeeceEEeecCCcEEEEEecC
Confidence 99999999999999999999887765543333334445578899999999999877789999999999999999999999
Q ss_pred CCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcceEEEcCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcH
Q 000984 422 GSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANA 501 (1198)
Q Consensus 422 GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~ 501 (1198)
|||||||+++|+|+|+|++|+|.+||+|+++++.+++|++||||+|+||||++||||||+||.|+++++++++||+.|++
T Consensus 454 GsGKSTll~ll~~~~~~~~G~I~idG~~i~~~~~~~lr~~i~~v~Q~~~Lf~~TI~eNI~~g~~~~~~~~v~~a~~~a~l 533 (1321)
T 4f4c_A 454 GCGKSTIISLLLRYYDVLKGKITIDGVDVRDINLEFLRKNVAVVSQEPALFNCTIEENISLGKEGITREEMVAACKMANA 533 (1321)
T ss_dssp SSCHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEEEECSSCCCCSEEHHHHHHTTCTTCCHHHHHHHHHHTTC
T ss_pred CCcHHHHHHHhccccccccCcccCCCccchhccHHHHhhcccccCCcceeeCCchhHHHhhhcccchHHHHHHHHHHccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhCCCeEEEEecCc
Q 000984 502 AKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRL 581 (1198)
Q Consensus 502 ~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~ 581 (1198)
+++|+.||+|++|.|||+|.+||||||||||||||+|++|+||||||||||||+++++.++++|+++.++||+|+||||+
T Consensus 534 ~~~i~~lp~G~~T~vGe~G~~LSGGQkQRiaiARAl~~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~~~T~iiiaHrl 613 (1321)
T 4f4c_A 534 EKFIKTLPNGYNTLVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESEGIVQQALDKAAKGRTTIIIAHRL 613 (1321)
T ss_dssp HHHHHHSTTTTSSEESSSSCCCCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCTTTHHHHHHHHHHHHTTSEEEEECSCT
T ss_pred hhHHHcCCCCCccEecCCCCCCCHHHHHHHHHHHHHccCCCEEEEecccccCCHHHHHHHHHHHHHHhCCCEEEEEcccH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhccCEEEEEeCCEEEEecChhhHhcCCCchhHHHHHHHhhccccccccccccccchhhhhhhcccccccccccccCC
Q 000984 582 STVRNADMIAVIHRGKIVEKGTHSKLVEDPEGAYSQLIRLQEANKESEQTIDGQRKSEISMESLRHSSHRMSLRRSISRG 661 (1198)
Q Consensus 582 ~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 661 (1198)
++++.||+|+||++|+|+|+|+|+||+++ ++.|+++++.|......+...+.....+.. ......+...........
T Consensus 614 s~i~~aD~Iivl~~G~ive~Gth~eL~~~-~g~y~~l~~~q~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 690 (1321)
T 4f4c_A 614 STIRNADLIISCKNGQVVEVGDHRALMAQ-QGLYYDLVTAQTFTDAVDSAAEGKFSRENS--VARQTSEHEGLSRQASEM 690 (1321)
T ss_dssp TTTTTCSEEEEEETTEEEEEECHHHHHTT-TCHHHHHHHHHHHHHHHHHHHCC---------------------------
T ss_pred HHHHhCCEEEEeeCCeeeccCCHHHHHHh-hhHHHHHHHhhhcccccccccccccccccc--cccccccccccccccccc
Confidence 99999999999999999999999999987 899999998875443221101000000000 000000000000000000
Q ss_pred CCCCCCCCcccccccCCCCCCCCcccCCCCCCC-------CCCCcccCCcchhHhhhhhcCChhHHHHHHHHHHHHHHHH
Q 000984 662 SSIGNSSRHSISVSFGLPSGQFADTALGEPAGP-------SQPTEEVAPEVPTRRLAYLNKPEIPVILAGTIAAMANGVI 734 (1198)
Q Consensus 662 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 734 (1198)
.......... .... ....+....+...... ...++.......+++++++.+++++.++++++++++.++.
T Consensus 691 ~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~ 767 (1321)
T 4f4c_A 691 DDIMNRVRSS-TIGS--ITNGPVIDEKEERIGKDALSRLKQELEENNAQKTNLFEILYHARPHALSLFIGMSTATIGGFI 767 (1321)
T ss_dssp ----------------------------CCCCCCHHHHHHHTTTTSCCCCCCHHHHHHHTGGGHHHHHHHHHHHHHGGGH
T ss_pred cchhhhhhcc-cccc--ccCCcchhHHHhhccchhHHHHHHHHHHcCCcceeHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0000000000 0000 0000000000000000 0000111122345566677788888888888888888889
Q ss_pred HHHHHHHHHHHHHhhcCCCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccccccc
Q 000984 735 LPIYGLLISSVIETFFKPPHELKKDSRFWALIYLALGAGSFLLSPAQSYFFAVAGNKLIQRIRSMCFEKVIHMEVSWFDE 814 (1198)
Q Consensus 735 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~~l~~~ll~~p~~fFd~ 814 (1198)
.+.+++++..+++.+..++........+|.++|++++++..++.+++.+++...+.++..++|.++|++++++|++|||.
T Consensus 768 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~lr~~l~~~il~~~~~ffd~ 847 (1321)
T 4f4c_A 768 YPTYSVFFTSFMNVFAGNPADFLSQGHFWALMFLVLAAAQGICSFLMTFFMGIASESLTRDLRNKLFRNVLSQHIGFFDS 847 (1321)
T ss_dssp HHHHHHHHHHHHHHTSSCSSTTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCSSSTTS
T ss_pred HHHHHHHHHHHHHHhcCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhcc
Confidence 99999999999887765443333445678888999999999999999999999999999999999999999999999997
Q ss_pred CCCChhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 000984 815 PEHSSGAIGARLSADAASVRALVGDALARIVQNISTAAAGLIIAFTASWQLALIILVMLPLIGVSGYTQMKFMKGFSADA 894 (1198)
Q Consensus 815 ~~~~~G~i~~r~s~D~~~i~~~l~~~l~~~i~~~~~~i~~li~~~~~~~~l~l~~l~~~pl~~~~~~~~~~~~~~~~~~~ 894 (1198)
+++++|+|+||+++|++.++..++..+..++..++.++++++++++++|++++++++++|+++++.+++.++.+....+.
T Consensus 848 ~~~~~G~i~~r~s~D~~~i~~~l~~~l~~~~~~~~~~i~~~~~~~~~~~~l~lv~l~~~~~~~~~~~~~~~~~~~~~~~~ 927 (1321)
T 4f4c_A 848 PQNASGKISTRLATDVPNLRTAIDFRFSTVITTLVSMVAGIGLAFFYGWQMALLIIAILPIVAFGQYLRGRRFTGKNVKS 927 (1321)
T ss_dssp GGGCHHHHHHHHHTHHHHHHTTTSHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHTSCCSSCSTTT
T ss_pred CCCChHHHHhcchhhHHHHHHHHHHHHHHHHHHhhhHHHHeeeehHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67899999999999999999999999999999999999999999999999999999999999988888877777666677
Q ss_pred HHHHHHHHHHHHHHhchhHHHHHhcchHHHHHHHHHHhhhHHHHhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 000984 895 KMKYEEASQVANDAVGSIRTVASFCAEEKVMQLYKKKCEAPMKTGIRQGMVSGGGFGASFFLLFAFYAASFYAGARLVED 974 (1198)
Q Consensus 895 ~~~~~~~~~~~~E~l~gi~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~ 974 (1198)
++..++....+.|+++|+++||+|++|+++.++|.+..+...+..++.....+...++...+..+..++++++|..++..
T Consensus 928 ~~~~~~~~~~~~e~l~gi~tIra~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~ 1007 (1321)
T 4f4c_A 928 ASEFADSGKIAIEAIENVRTVQALAREDTFYENFCEKLDIPHKEAIKEAFIQGLSYGCASSVLYLLNTCAYRMGLALIIT 1007 (1321)
T ss_dssp SSHHHHHHHHHHHHHHTHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHHHHHHHHHhhHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhc
Confidence 77788888999999999999999999999999999999999999999888888888888888888889999999999988
Q ss_pred CCcCHH--HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCcccCCcccEEEeeeeEEC
Q 000984 975 GKATFS--DVFKVFFSLTMTAIGISQSSSFSSDSNKAKSAAASIFAIIDRESKIDPSDESGTILEDVKGEIELHHVSFKY 1052 (1198)
Q Consensus 975 g~~t~g--~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~~~~~~G~I~f~nVsf~Y 1052 (1198)
+..+++ .++.++.++.....++..+..+...++.+..+++|++++++.+++.+.... ..+.++..|+|+|+||+|+|
T Consensus 1008 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~-~~~~~~~~g~I~f~nVsf~Y 1086 (1321)
T 4f4c_A 1008 DPPTMQPMRVLRVMYAITISTSTLGFATSYFPEYAKATFAGGIIFGMLRKISKIDSLSL-AGEKKKLYGKVIFKNVRFAY 1086 (1321)
T ss_dssp SSCSSCHHHHHHHHHHHHTTTSSTTGGGGHHHHHHHHHHHHHHHHHHHHCCCSSCTTCC-CSBCCCCCCCEEEEEEEECC
T ss_pred CccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcccCCCccC-CCCCCCCCCeEEEEEEEEeC
Confidence 876654 444444555555567778888889999999999999999998877654332 23345568999999999999
Q ss_pred CCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHhhcceecccccccc
Q 000984 1053 PSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFN 1132 (1198)
Q Consensus 1053 ~~~~~~~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~~i~l~~LR~~IsiV~Qdp~LF~ 1132 (1198)
|++++.+||+||||+|+|||+||||||||||||||+++|+|||||++|+|+|||+||+++++++||++|++|||||+||+
T Consensus 1087 ~~~~~~~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~iDG~di~~i~~~~lR~~i~~V~Qdp~LF~ 1166 (1321)
T 4f4c_A 1087 PERPEIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDTLGGEIFIDGSEIKTLNPEHTRSQIAIVSQEPTLFD 1166 (1321)
T ss_dssp TTSCSSCSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTSSCCSSSEEEETTEETTTBCHHHHHTTEEEECSSCCCCS
T ss_pred CCCCCCccccceeEEECCCCEEEEECCCCChHHHHHHHHhcCccCCCCEEEECCEEhhhCCHHHHHhheEEECCCCEeeC
Confidence 98777789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccHHHHHhcCC-CCCCCHHHHHHHHHHcchHHHHHhcccccccee
Q 000984 1133 DTIRANIAYGK-GGDATEAEIQAASEMANAHKFICSLQQVRTSRL 1176 (1198)
Q Consensus 1133 gTIreNI~~g~-~~~~tdeei~~Al~~A~l~dfI~~LP~g~dt~v 1176 (1198)
|||||||+||. ++++||||||+||+.|++||||++||+||||.|
T Consensus 1167 gTIreNI~~gld~~~~sd~ei~~Al~~a~l~~~I~~Lp~GldT~v 1211 (1321)
T 4f4c_A 1167 CSIAENIIYGLDPSSVTMAQVEEAARLANIHNFIAELPEGFETRV 1211 (1321)
T ss_dssp EEHHHHHSSSSCTTTSCHHHHHHHHHHTTCHHHHHTSTTTTCSEE
T ss_pred ccHHHHHhccCCCCCCCHHHHHHHHHHhCChHHHHcCcCCCCCEe
Confidence 99999999984 357999999999999999999999999999987
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-142 Score=1418.07 Aligned_cols=1118 Identities=40% Similarity=0.699 Sum_probs=942.7
Q ss_pred cccchHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCC-------C-c--------hhhHHHHHH
Q 000984 41 TESVPFYKLFTFADSADTALMIIGSIGAIGNGLCLPLMTLLFGDLINTFGDNQ-------N-N--------SETVDKVSK 104 (1198)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~-~--------~~~~~~~~~ 104 (1198)
...++++++++|.++.++.+++++++++++.+++.|+++++++.+++.+.... . . ....+....
T Consensus 30 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (1284)
T 3g5u_A 30 KPAVSVLTMFRYAGWLDRLYMLVGTLAAIIHGVALPLMMLIFGDMTDSFASVGNVSKNSTNMSEADKRAMFAKLEEEMTT 109 (1284)
T ss_dssp ---CTTHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHHHHHHHH
T ss_pred cccccHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccccccchhhhHHHHHH
Confidence 34567889999998888888888999999999999999999999888753210 0 0 001123344
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhccCCcchHHHHHHhHHHHHHHHHHHHHHH
Q 000984 105 VAVKFVYLGIGSGIASFLQVTCWMITGERQATRIRGLYLKTILRQDVAFFDNETNTGEVVGRMSGDTVLIQDAMGEKVGK 184 (1198)
Q Consensus 105 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~f~~~~~~G~i~~r~s~D~~~i~~~~~~~~~~ 184 (1198)
+.+++++++++.+++.+++.+++.+.+.+...++|.+++++++++|++|||+ +++|+++||+++|++.+++.++..+..
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~l~~~~~~~f~~-~~~G~l~sr~~~D~~~i~~~~~~~~~~ 188 (1284)
T 3g5u_A 110 YAYYYTGIGAGVLIVAYIQVSFWCLAAGRQIHKIRQKFFHAIMNQEIGWFDV-HDVGELNTRLTDDVSKINEGIGDKIGM 188 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTTHHHHS-CCSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHcc-CCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566777888888999999999999999999999999999999999999997 599999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcHHH
Q 000984 185 FLQLMATFLGGFLIAFIKGWLLTLVMLSSIPLLAMSGGVMAIMISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQ 264 (1198)
Q Consensus 185 ~~~~~~~~i~~~i~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~ 264 (1198)
++..+.++++.++++++++|.+++++++++|+++++..++.+..++..++.++..++..+.+.|+++|+++||+|++|+.
T Consensus 189 ~~~~~~~~i~~~~~~~~~~~~l~l~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~ikaf~~e~~ 268 (1284)
T 3g5u_A 189 FFQAMATFFGGFIIGFTRGWKLTLVILAISPVLGLSAGIWAKILSSFTDKELHAYAKAGAVAEEVLAAIRTVIAFGGQKK 268 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCHHHHHTTCCCCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHhcchHH
Confidence 99999999999999999999999999999999999999999999999989999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000984 265 AMSNYKKFLVTAYKSGVQEGLAAGIGLGMVMLIVFCSYALSVWYGGKLILEEGYNGGQVVNVMVAVLTGSMSLGEASPCL 344 (1198)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~ 344 (1198)
+.++|.+..++..+...+.....++..++..++..+.+++.+|+|+.++..+.++.|.+++++..++....++..+.+.+
T Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 348 (1284)
T 3g5u_A 269 ELERYNNNLEEAKRLGIKKAITANISMGAAFLLIYASYALAFWYGTSLVISKEYSIGQVLTVFFSVLIGAFSVGQASPNI 348 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCSSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999888888877777777777777888888889999999999999999988877766666677888888888
Q ss_pred HHHHHHHHHHHHHHHHHccCCCCCccCCCCcccCCCcccEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCc
Q 000984 345 SAFGAGQAAAFKMFETINRKPEIDAYDTKGKILDDIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSG 424 (1198)
Q Consensus 345 ~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsG 424 (1198)
..+..+..++.|+++.++.+++.++....+..+++..|.|+++||+|+|+++++.++|+|+||+|++||+++||||||||
T Consensus 349 ~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~~g~i~~~~v~~~y~~~~~~~vL~~isl~i~~G~~~~ivG~sGsG 428 (1284)
T 3g5u_A 349 EAFANARGAAYEVFKIIDNKPSIDSFSKSGHKPDNIQGNLEFKNIHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCG 428 (1284)
T ss_dssp HHHHHHHHHHHHHHHTTSCCCCCSSCCSSCCCCTTCCCCEEEEEEEECCSSTTSCCSEEEEEEEECTTCEEEEECCSSSS
T ss_pred HHHHHHHHHHHHHHHHHcCCCcCCcccccCCCCCCCCCeEEEEEEEEEcCCCCCCcceecceEEEcCCCEEEEECCCCCC
Confidence 89999999999999999877654432222222334568899999999998655568999999999999999999999999
Q ss_pred HHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcceEEEcCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHH
Q 000984 425 KSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKF 504 (1198)
Q Consensus 425 KStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~ 504 (1198)
||||+++|+|+++|++|+|.+||+|+++++++++|++|+||||+|++|++||+|||.+|.++.++++++++++.++++++
T Consensus 429 KSTl~~ll~g~~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~eNi~~g~~~~~~~~~~~~~~~~~~~~~ 508 (1284)
T 3g5u_A 429 KSTTVQLMQRLYDPLDGMVSIDGQDIRTINVRYLREIIGVVSQEPVLFATTIAENIRYGREDVTMDEIEKAVKEANAYDF 508 (1284)
T ss_dssp HHHHHHHTTTSSCCSEEEEEETTEEGGGSCHHHHHHHEEEECSSCCCCSSCHHHHHHHHCSSCCHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHhCCCCCCCeEEEECCEEHHhCCHHHHHhheEEEcCCCccCCccHHHHHhcCCCCCCHHHHHHHHHHhCcHHH
Confidence 99999999999999999999999999999999999999999999999999999999999888899999999999999999
Q ss_pred HHhCCCCccchhcCCCCCCChHHHHHHhHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhCCCeEEEEecCcchh
Q 000984 505 IDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTV 584 (1198)
Q Consensus 505 i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~ 584 (1198)
+..+|+|++|.+|++|.+||||||||||||||++++|+|||||||||+||+++++.+++.++...+++|+|+||||++++
T Consensus 509 i~~l~~g~~t~~~~~g~~LSgGq~QriaiARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~i 588 (1284)
T 3g5u_A 509 IMKLPHQFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKAREGRTTIVIAHRLSTV 588 (1284)
T ss_dssp HHHSTTGGGCCCSSSSCSSCHHHHHHHHHHHHHHHCCSEEEEESTTCSSCHHHHHHHHHHHHHHHTTSEEEEECSCHHHH
T ss_pred HHhccccccccccCCCCccCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999988999999999999999
Q ss_pred hccCEEEEEeCCEEEEecChhhHhcCCCchhHHHHHHHhhccccccccccccccchhhhhhhcccccccccccccCCCCC
Q 000984 585 RNADMIAVIHRGKIVEKGTHSKLVEDPEGAYSQLIRLQEANKESEQTIDGQRKSEISMESLRHSSHRMSLRRSISRGSSI 664 (1198)
Q Consensus 585 ~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 664 (1198)
..||+|+||++|+|+|.|+|+||+++ ++.|.+++..+....+.+........ ....... . ...........
T Consensus 589 ~~~d~i~vl~~G~i~~~g~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~------~~~~~~~~~~~ 659 (1284)
T 3g5u_A 589 RNADVIAGFDGGVIVEQGNHDELMRE-KGIYFKLVMTQTAGNEIELGNEACKS-KDEIDNL-D------MSSKDSGSSLI 659 (1284)
T ss_dssp TTCSEEEECSSSCCCCEECHHHHHHT-TSHHHHHHHHTC-----------------------------------------
T ss_pred HcCCEEEEEECCEEEEECCHHHHHhC-CCHHHHHHHHhhhccccccccccccc-ccccccc-c------ccccccccccc
Confidence 99999999999999999999999987 68888887665432211100000000 0000000 0 00000000000
Q ss_pred CCCCCcccccccCCCCCCCCcccCCCCCCCCCCCcccCCcchhHhhhhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000984 665 GNSSRHSISVSFGLPSGQFADTALGEPAGPSQPTEEVAPEVPTRRLAYLNKPEIPVILAGTIAAMANGVILPIYGLLISS 744 (1198)
Q Consensus 665 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 744 (1198)
. ..........+ ...... .......++......+++++.+.+++++.++++++++++.+++.+.+++++..
T Consensus 660 --~-~~~~~~~~~~~--~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 730 (1284)
T 3g5u_A 660 --R-RRSTRKSICGP--HDQDRK----LSTKEALDEDVPPASFWRILKLNSTEWPYFVVGIFCAIINGGLQPAFSVIFSK 730 (1284)
T ss_dssp ---------------------------------CCCCCSCCCTTHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --c-ccccccccccc--cccccc----cchhhhhhccccchHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 00000000000 000000 00000001111223344555555666777778888888888888888888888
Q ss_pred HHHhhcCCCc--hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccccccCCCChhhH
Q 000984 745 VIETFFKPPH--ELKKDSRFWALIYLALGAGSFLLSPAQSYFFAVAGNKLIQRIRSMCFEKVIHMEVSWFDEPEHSSGAI 822 (1198)
Q Consensus 745 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~~l~~~ll~~p~~fFd~~~~~~G~i 822 (1198)
+++.+..... .......+|.+++++++++..++.+++.+++...+.++..++|.++|++++++|++|||++++++|+|
T Consensus 731 ~i~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~ff~~~~~~~G~l 810 (1284)
T 3g5u_A 731 VVGVFTNGGPPETQRQNSNLFSLLFLILGIISFITFFLQGFTFGKAGEILTKRLRYMVFKSMLRQDVSWFDDPKNTTGAL 810 (1284)
T ss_dssp HHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSHHHHSCSCCHHHH
T ss_pred HHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHcCCCCCHHHH
Confidence 8876653321 12233456777788888888899999999999999999999999999999999999999777999999
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 000984 823 GARLSADAASVRALVGDALARIVQNISTAAAGLIIAFTASWQLALIILVMLPLIGVSGYTQMKFMKGFSADAKMKYEEAS 902 (1198)
Q Consensus 823 ~~r~s~D~~~i~~~l~~~l~~~i~~~~~~i~~li~~~~~~~~l~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 902 (1198)
++|+++|++.++..++..+..++..++.+++++++++.++|++++++++++|+++++.++..+++++...+.++..+...
T Consensus 811 ~~rl~~D~~~i~~~~~~~l~~~~~~~~~~~~~~i~~~~~~~~l~lv~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 890 (1284)
T 3g5u_A 811 TTRLANDAAQVKGATGSRLAVIFQNIANLGTGIIISLIYGWQLTLLLLAIVPIIAIAGVVEMKMLSGQALKDKKELEGSG 890 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999998888888888888889
Q ss_pred HHHHHHhchhHHHHHhcchHHHHHHHHHHhhhHHHHhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHH
Q 000984 903 QVANDAVGSIRTVASFCAEEKVMQLYKKKCEAPMKTGIRQGMVSGGGFGASFFLLFAFYAASFYAGARLVEDGKATFSDV 982 (1198)
Q Consensus 903 ~~~~E~l~gi~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~~t~g~l 982 (1198)
..+.|+++|+++||+|++|+++.++|.+..+...+...+.....+...++...+..+..++++|+|++++..|.++++++
T Consensus 891 ~~~~e~l~gi~ti~a~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~~~~ 970 (1284)
T 3g5u_A 891 KIATEAIENFRTVVSLTREQKFETMYAQSLQIPYRNAMKKAHVFGITFSFTQAMMYFSYAAAFRFGAYLVTQQLMTFENV 970 (1284)
T ss_dssp HHHHHHHTTCTTTTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSSCSCSTTH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccHHHH
Confidence 99999999999999999999999999999999999999888888888999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCcccCCcccEEEeeeeEECCCCCCccccc
Q 000984 983 FKVFFSLTMTAIGISQSSSFSSDSNKAKSAAASIFAIIDRESKIDPSDESGTILEDVKGEIELHHVSFKYPSRPDVQVFR 1062 (1198)
Q Consensus 983 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~~~~~~G~I~f~nVsf~Y~~~~~~~vL~ 1062 (1198)
+.++.++.....++..+..+...++++..+++|+.++++.+++.+........+++.+|.|+|+||+|+|+++++.++|+
T Consensus 971 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~~g~i~~~~v~~~y~~~~~~~~l~ 1050 (1284)
T 3g5u_A 971 LLVFSAIVFGAMAVGQVSSFAPDYAKATVSASHIIRIIEKTPEIDSYSTQGLKPNMLEGNVQFSGVVFNYPTRPSIPVLQ 1050 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHTSSSCCSTHHHHHHHHHHHHHHSCCSSSSCCSSCCCTTTTSCCEEEEEEEBCCSCGGGCCSBS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccccccccccCCCCcEEEEEEEEECCCCCCCeeec
Confidence 99999999999999999999999999999999999999987765432222222334578999999999998665557999
Q ss_pred cceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHhhcceeccccccccccHHHHHhcC
Q 000984 1063 DLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYG 1142 (1198)
Q Consensus 1063 ~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~~i~l~~LR~~IsiV~Qdp~LF~gTIreNI~~g 1142 (1198)
||||+|+|||++|||||||||||||+++|+|+|+|++|+|+|||+|+++++++++|++|++|||||.||++||+|||++|
T Consensus 1051 ~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~eNi~~~ 1130 (1284)
T 3g5u_A 1051 GLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLRAQLGIVSQEPILFDCSIAENIAYG 1130 (1284)
T ss_dssp SCCEEECSSSEEEEECSSSTTHHHHHHHHTTSSCCSEEEEESSSSCTTSSCHHHHTTSCEEEESSCCCCSSBHHHHHTCC
T ss_pred ceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEcccCCHHHHHhceEEECCCCccccccHHHHHhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CC-CCCCHHHHHHHHHHcchHHHHHhccccccceee
Q 000984 1143 KG-GDATEAEIQAASEMANAHKFICSLQQVRTSRLL 1177 (1198)
Q Consensus 1143 ~~-~~~tdeei~~Al~~A~l~dfI~~LP~g~dt~v~ 1177 (1198)
.+ ...+++++++|++.++++++++++|+||||.|-
T Consensus 1131 ~~~~~~~~~~i~~~~~~~~~~~~i~~l~~gldt~vg 1166 (1284)
T 3g5u_A 1131 DNSRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVG 1166 (1284)
T ss_dssp CSSCCCCHHHHHHHHHHHTCHHHHSSTTTGGGCBCS
T ss_pred CCCCCCCHHHHHHHHHHhCcHHHHHhCccccccccC
Confidence 54 247999999999999999999999999999863
|
| >4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-86 Score=884.90 Aligned_cols=576 Identities=34% Similarity=0.575 Sum_probs=482.0
Q ss_pred cchHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 000984 43 SVPFYKLFTFADSADTALMIIGSIGAIGNGLCLPLMTLLFGDLINTFGDNQNNSETVDKVSKVAVKFVYLGIGSGIASFL 122 (1198)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 122 (1198)
...+++++++..+. +..++++++++++.+.+.|.++++++.+++.+..... ........+++++++++++..++.++
T Consensus 737 ~~~~~~~~~~~~~~-~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~i~~~~ 813 (1321)
T 4f4c_A 737 KTNLFEILYHARPH-ALSLFIGMSTATIGGFIYPTYSVFFTSFMNVFAGNPA--DFLSQGHFWALMFLVLAAAQGICSFL 813 (1321)
T ss_dssp CCCHHHHHHHTGGG-HHHHHHHHHHHHHGGGHHHHHHHHHHHHHHHTSSCSS--TTTTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred ceeHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCch--hhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666655543 4455667777778888899999999998887654321 12223344566677788888889999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhc-cCCcchHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000984 123 QVTCWMITGERQATRIRGLYLKTILRQDVAFFDN-ETNTGEVVGRMSGDTVLIQDAMGEKVGKFLQLMATFLGGFLIAFI 201 (1198)
Q Consensus 123 ~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~f~~-~~~~G~i~~r~s~D~~~i~~~~~~~~~~~~~~~~~~i~~~i~~~~ 201 (1198)
+.+++.+.+.++..++|..++++++++|++|||+ ++++|+++||+++|++.+++.++..+..++..+..+++.++++++
T Consensus 814 ~~~~~~~~~~~~~~~lr~~l~~~il~~~~~ffd~~~~~~G~i~~r~s~D~~~i~~~l~~~l~~~~~~~~~~i~~~~~~~~ 893 (1321)
T 4f4c_A 814 MTFFMGIASESLTRDLRNKLFRNVLSQHIGFFDSPQNASGKISTRLATDVPNLRTAIDFRFSTVITTLVSMVAGIGLAFF 893 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTSCSSSTTSGGGCHHHHHHHHHTHHHHHHTTTSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhccCCCChHHHHhcchhhHHHHHHHHHHHHHHHHHHhhhHHHHeeeehH
Confidence 9999999999999999999999999999999985 258999999999999999999999999999999999999999999
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcHHHHHHHHHHHHHHHHHHHH
Q 000984 202 KGWLLTLVMLSSIPLLAMSGGVMAIMISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYKSGV 281 (1198)
Q Consensus 202 ~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~ 281 (1198)
++|.+++++++++|++++...++.+...+...+..+..++....+.|+++|+++||+|++|+.+.+++.+..+...+...
T Consensus 894 ~~~~l~lv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~e~~~~~~~~~~~~~~~~~~~ 973 (1321)
T 4f4c_A 894 YGWQMALLIIAILPIVAFGQYLRGRRFTGKNVKSASEFADSGKIAIEAIENVRTVQALAREDTFYENFCEKLDIPHKEAI 973 (1321)
T ss_dssp HCHHHHHHHHHHHHHHHHHHHHHTSCCSSCSTTTSSHHHHHHHHHHHHHHTHHHHHHTTTHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhccchHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999888777666655554445555667778889999999999999999999999999999988888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000984 282 QEGLAAGIGLGMVMLIVFCSYALSVWYGGKLILEEGYNGG--QVVNVMVAVLTGSMSLGEASPCLSAFGAGQAAAFKMFE 359 (1198)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~--~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~r~~~ 359 (1198)
+.....++...+...+..+..++.+++|..++..+..+.+ .++.++........++..+......+..+..+++|+++
T Consensus 974 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~ri~~ 1053 (1321)
T 4f4c_A 974 KEAFIQGLSYGCASSVLYLLNTCAYRMGLALIITDPPTMQPMRVLRVMYAITISTSTLGFATSYFPEYAKATFAGGIIFG 1053 (1321)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHTTSSSSCSSCHHHHHHHHHHHHTTTSSTTGGGGHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhcCccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777777666666666677777888877776655443 33333322222223444555667778889999999999
Q ss_pred HHccCCCCCccCCCCcccCCCcccEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCC
Q 000984 360 TINRKPEIDAYDTKGKILDDIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQ 439 (1198)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~g~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~ 439 (1198)
+++.+++.++... ....++..|.|+|+||+|+||++++.++|+|+||+|+|||++|||||||||||||+++|+|+|+|+
T Consensus 1054 ~l~~~~~~~~~~~-~~~~~~~~g~I~f~nVsf~Y~~~~~~~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~ 1132 (1321)
T 4f4c_A 1054 MLRKISKIDSLSL-AGEKKKLYGKVIFKNVRFAYPERPEIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDTL 1132 (1321)
T ss_dssp HHHCCCSSCTTCC-CSBCCCCCCCEEEEEEEECCTTSCSSCSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTSSCCS
T ss_pred HhhCcccCCCccC-CCCCCCCCCeEEEEEEEEeCCCCCCCccccceeEEECCCCEEEEECCCCChHHHHHHHHhcCccCC
Confidence 9988776543322 233455678999999999999877778999999999999999999999999999999999999999
Q ss_pred CCeEEECCeecCCcCHHHHhcceEEEcCCCCCCcccHHHHHhcCC--CCCCHHHHHHHHHHhcHHHHHHhCCCCccchhc
Q 000984 440 AGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGK--DDATTEEIRVATELANAAKFIDKLPQGIDTLVG 517 (1198)
Q Consensus 440 ~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~Ni~~~~--~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~ 517 (1198)
+|+|.|||+|+++++++++|++|+||||||+||+|||||||.||. +++++++++++|+.++++++|+++|+|+||.||
T Consensus 1133 ~G~I~iDG~di~~i~~~~lR~~i~~V~Qdp~LF~gTIreNI~~gld~~~~sd~ei~~Al~~a~l~~~I~~Lp~GldT~vg 1212 (1321)
T 4f4c_A 1133 GGEIFIDGSEIKTLNPEHTRSQIAIVSQEPTLFDCSIAENIIYGLDPSSVTMAQVEEAARLANIHNFIAELPEGFETRVG 1212 (1321)
T ss_dssp SSEEEETTEETTTBCHHHHHTTEEEECSSCCCCSEEHHHHHSSSSCTTTSCHHHHHHHHHHTTCHHHHHTSTTTTCSEET
T ss_pred CCEEEECCEEhhhCCHHHHHhheEEECCCCEeeCccHHHHHhccCCCCCCCHHHHHHHHHHhCChHHHHcCcCCCCCEec
Confidence 999999999999999999999999999999999999999999984 468899999999999999999999999999999
Q ss_pred CCCCCCChHHHHHHhHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhCCCeEEEEecCcchhhccCEEEEEeCCE
Q 000984 518 EHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGK 597 (1198)
Q Consensus 518 ~~g~~lSgGqkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~ 597 (1198)
|+|.+|||||||||||||||+++|+|||||||||+||++||+.|+++|++.+++||+|+||||++++++||+|+|||+|+
T Consensus 1213 e~G~~LSgGQrQriaiARAllr~~~ILiLDEaTSaLD~~tE~~Iq~~l~~~~~~~TvI~IAHRLsTi~~aD~I~Vld~G~ 1292 (1321)
T 4f4c_A 1213 DRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEKVVQEALDRAREGRTCIVIAHRLNTVMNADCIAVVSNGT 1292 (1321)
T ss_dssp TTSCSSCHHHHHHHHHHHHHHSCCSEEEEESCCCSTTSHHHHHHHHHHTTTSSSSEEEEECSSSSTTTTCSEEEEESSSS
T ss_pred CCCcccCHHHHHHHHHHHHHHhCCCEEEEeCccccCCHHHHHHHHHHHHHHcCCCEEEEeccCHHHHHhCCEEEEEECCE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecChhhHhcCCCchhHHHHHHHh
Q 000984 598 IVEKGTHSKLVEDPEGAYSQLIRLQE 623 (1198)
Q Consensus 598 i~~~g~~~~l~~~~~~~~~~~~~~~~ 623 (1198)
|+|+|+|+||+++ ++.|++|++.|.
T Consensus 1293 IvE~Gth~eLl~~-~g~y~~L~~~Q~ 1317 (1321)
T 4f4c_A 1293 IIEKGTHTQLMSE-KGAYYKLTQKQM 1317 (1321)
T ss_dssp EEEEECHHHHHHC-C-----------
T ss_pred EEEECCHHHHHhC-CcHHHHHHHHHH
Confidence 9999999999997 789999998764
|
| >3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-80 Score=763.98 Aligned_cols=569 Identities=25% Similarity=0.396 Sum_probs=491.2
Q ss_pred HHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000984 46 FYKLFTFADSADTALMIIGSIGAIGNGLCLPLMTLLFGDLINTFGDNQNNSETVDKVSKVAVKFVYLGIGSGIASFLQVT 125 (1198)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 125 (1198)
++.+++|.++..+ .+++++++.++..++.+..|++++.+++......+ .+....+.+.+++++++..++.++..+
T Consensus 11 ~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (587)
T 3qf4_A 11 SKTLARYLKPYWI-FAVLAPLFMVVEVICDLSQPTLLARIVDEGIARGD----FSLVLKTGILMLIVALIGAVGGIGCTV 85 (587)
T ss_dssp CCCGGGGTGGGHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTC----HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445566655443 33445555566666777778889999987543221 122233334445555666777788888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCChhhhhccCCcchHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 000984 126 CWMITGERQATRIRGLYLKTILRQDVAFFDNETNTGEVVGRMSGDTVLIQDAMGEKVGKFLQLMATFLGGFLIAFIKGWL 205 (1198)
Q Consensus 126 ~~~~~~~~~~~~lr~~~~~~ll~~~~~~f~~~~~~G~i~~r~s~D~~~i~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~ 205 (1198)
+..+.+.+...++|.++++++++.|+.+|++ +++|+++||+++|++.+++.+...+..++..++.+++.+++++.++|.
T Consensus 86 ~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~~-~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~ 164 (587)
T 3qf4_A 86 FASYASQNFGADLRRDLFRKVLSFSISNVNR-FHTSSLITRLTNDVTQLQNLVMMLLRIVVRAPLLFVGGIVMAVSINVK 164 (587)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH-SCHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCHHHHcc-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888999999999999999999999999997 499999999999999999999988888888888889999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHH
Q 000984 206 LTLVMLSSIPLLAMSGGVMAIMISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYKSGVQEGL 285 (1198)
Q Consensus 206 l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 285 (1198)
+++++++++|+++++..++.+..++..++.++..++..+.+.|.++|+++||+|++|+.+.++|.+..++..+...+...
T Consensus 165 l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 244 (587)
T 3qf4_A 165 LSSVLIFLIPPIVLLFVWLTKKGNPLFRKIQESTDEVNRVVRENLLGVRVVRAFRREEYENENFRKANESLRRSIISAFS 244 (587)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999988888888888888888888999999999999999999999999999999999988888877777766
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC
Q 000984 286 AAGIGLGMVMLIVFCSYALSVWYGGKLILEEGYNGGQVVNVMVAVLTGSMSLGEASPCLSAFGAGQAAAFKMFETINRKP 365 (1198)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 365 (1198)
..+....+..++..+..++++++|+.++..+.++.|.+++++.+......++..+...+..+..+..+++|+.++++.++
T Consensus 245 ~~~~~~~~~~~~~~~~~~~vl~~g~~~v~~g~lt~g~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~ri~~~l~~~~ 324 (587)
T 3qf4_A 245 LIVFALPLFIFIVNMGMIAVLWFGGVLVRNNQMEIGSIMAYTNYLMQIMFSLMMIGNILNFIVRASASAKRVLEVLNEKP 324 (587)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 66666666666666677778889999999999999999887777766667777777788888899999999999998765
Q ss_pred CCCccCCCCcccCCCcccEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEE
Q 000984 366 EIDAYDTKGKILDDIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLI 445 (1198)
Q Consensus 366 ~~~~~~~~~~~~~~~~g~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i 445 (1198)
+.++.. .....++..+.|+++||+|+|+.. ++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.+
T Consensus 325 ~~~~~~-~~~~~~~~~~~i~~~~v~~~y~~~-~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~i 402 (587)
T 3qf4_A 325 AIEEAD-NALALPNVEGSVSFENVEFRYFEN-TDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEV 402 (587)
T ss_dssp SCCCCT-TCBCCSCCCCCEEEEEEEECSSSS-SCCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSCCSEEEEEE
T ss_pred ccCCCC-CccccCCCCCcEEEEEEEEEcCCC-CCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCcEEEE
Confidence 533221 111223345789999999999743 467999999999999999999999999999999999999999999999
Q ss_pred CCeecCCcCHHHHhcceEEEcCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCCh
Q 000984 446 DGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSG 525 (1198)
Q Consensus 446 ~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSg 525 (1198)
||+|+++++.+++|++|+||||+|++|++||+|||.++.+..++++++++++.++++++++.+|+|++|.+|++|.+|||
T Consensus 403 ~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~~~~~~~~LSg 482 (587)
T 3qf4_A 403 DELDVRTVKLKDLRGHISAVPQETVLFSGTIKENLKWGREDATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSG 482 (587)
T ss_dssp SSSBGGGBCHHHHHHHEEEECSSCCCCSEEHHHHHTTTCSSCCHHHHHHHHHHTTCHHHHHTSSSGGGCEECSSSCSSCH
T ss_pred CCEEcccCCHHHHHhheEEECCCCcCcCccHHHHHhccCCCCCHHHHHHHHHHhCcHHHHHhcccchhhHhcCCCCCcCH
Confidence 99999999999999999999999999999999999999888899999999999999999999999999999999999999
Q ss_pred HHHHHHhHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhCCCeEEEEecCcchhhccCEEEEEeCCEEEEecChh
Q 000984 526 GQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHS 605 (1198)
Q Consensus 526 Gqkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~ 605 (1198)
|||||++||||++++|+|||||||||+||+++++.+++.++++.+++|+|+||||++++..||+|++|++|+|++.|+|+
T Consensus 483 GqrQrv~lARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~~d~i~vl~~G~i~~~g~~~ 562 (587)
T 3qf4_A 483 GQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYTKGCTTFIITQKIPTALLADKILVLHEGKVAGFGTHK 562 (587)
T ss_dssp HHHHHHHHHHHHHTCCSEEEEESCCTTSCHHHHHHHHHHHHHHSTTCEEEEEESCHHHHTTSSEEEEEETTEEEEEECHH
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHhCCCCEEEEEecChHHHHhCCEEEEEECCEEEEECCHH
Confidence 99999999999999999999999999999999999999999988899999999999999999999999999999999999
Q ss_pred hHhcCCCchhHHHHHHHh
Q 000984 606 KLVEDPEGAYSQLIRLQE 623 (1198)
Q Consensus 606 ~l~~~~~~~~~~~~~~~~ 623 (1198)
|++++ ++.|++++..+.
T Consensus 563 el~~~-~~~~~~~~~~~~ 579 (587)
T 3qf4_A 563 ELLEH-CKPYREIYESQF 579 (587)
T ss_dssp HHHHH-CHHHHHHHHHHC
T ss_pred HHHhC-CcHHHHHHHHHh
Confidence 99986 678988887653
|
| >3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.6e-80 Score=763.28 Aligned_cols=570 Identities=29% Similarity=0.490 Sum_probs=496.9
Q ss_pred cchHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 000984 43 SVPFYKLFTFADSADTALMIIGSIGAIGNGLCLPLMTLLFGDLINTFGDNQNNSETVDKVSKVAVKFVYLGIGSGIASFL 122 (1198)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 122 (1198)
...++++++|+++.++ .+++++++.++..++.+..|++++.+++......+. +....+.+.++++.++..++.++
T Consensus 22 ~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~ 96 (598)
T 3qf4_B 22 TATLRRLLGYLRPHTF-TLIMVFVFVTVSSILGVLSPYLIGKTIDVVFVPRRF----DLLPRYMLILGTIYALTSLLFWL 96 (598)
T ss_dssp HHHHHHHGGGTGGGHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTCG----GGHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCH----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456777777766543 344455556666677777788999999876532221 22333444555666677788888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhccCCcchHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000984 123 QVTCWMITGERQATRIRGLYLKTILRQDVAFFDNETNTGEVVGRMSGDTVLIQDAMGEKVGKFLQLMATFLGGFLIAFIK 202 (1198)
Q Consensus 123 ~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~f~~~~~~G~i~~r~s~D~~~i~~~~~~~~~~~~~~~~~~i~~~i~~~~~ 202 (1198)
+.++....+.++..++|..+++++++.|+++|++ +++|++++|+++|++.+++.+...+..++..+..+++.+++++.+
T Consensus 97 ~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~~-~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~ 175 (598)
T 3qf4_B 97 QGKIMLTLSQDVVFRLRKELFEKLQRVPVGFFDR-TPHGDIISRVINDVDNINNVLGNSIIQFFSGIVTLAGAVIMMFRV 175 (598)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSCTHHHHH-SCHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHcC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888889999999999999999999999999997 499999999999999999999988888999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcHHHHHHHHHHHHHHHHHHHHH
Q 000984 203 GWLLTLVMLSSIPLLAMSGGVMAIMISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYKSGVQ 282 (1198)
Q Consensus 203 ~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~ 282 (1198)
+|.+++++++++|+++++..++.+..++..++.++..++..+.+.|.++|+++||+|++|+.+.++|.+...+..+...+
T Consensus 176 ~~~l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~ 255 (598)
T 3qf4_B 176 NVILSLVTLSIVPLTVLITQIVSSQTRKYFYENQRVLGQLNGIIEEDISGLTVIKLFTREEKEMEKFDRVNESLRKVGTK 255 (598)
T ss_dssp CHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHcCChHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999998888899988888888889999999999999999999999999999999999999888888777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 000984 283 EGLAAGIGLGMVMLIVFCSYALSVWYGGKLILEEGYNGGQVVNVMVAVLTGSMSLGEASPCLSAFGAGQAAAFKMFETIN 362 (1198)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~ 362 (1198)
.....+....+..++..+.+++.+++|++++..+.++.|.+++++.+......++..+...+..+..+..+++|+.++++
T Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~ls~g~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~ri~~~l~ 335 (598)
T 3qf4_B 256 AQIFSGVLPPLMNMVNNLGFALISGFGGWLALKDIITVGTIATFIGYSRQFTRPLNELSNQFNMIQMALASAERIFEILD 335 (598)
T ss_dssp HHHHTTTHHHHHHHHHHHHHHHHHHHHHHHGGGTSSCHHHHHHHHTTTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 77776666666666666777778888999988999999998877665555566777788888899999999999999998
Q ss_pred cCCCCCccCCCCcccCCCcccEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCe
Q 000984 363 RKPEIDAYDTKGKILDDIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGE 442 (1198)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~g~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~ 442 (1198)
.+++.+.. .....++..+.|+++||+|+|+. ++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+
T Consensus 336 ~~~~~~~~--~~~~~~~~~~~i~~~~v~~~y~~--~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~ 411 (598)
T 3qf4_B 336 LEEEKDDP--DAVELREVRGEIEFKNVWFSYDK--KKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQ 411 (598)
T ss_dssp SCCCCCCS--SCCCCCSCCCCEEEEEEECCSSS--SSCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSCCSEEE
T ss_pred CCCCCCCC--CCCCCCCCCCeEEEEEEEEECCC--CCccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcCCCCeE
Confidence 76553221 11222344578999999999964 357999999999999999999999999999999999999999999
Q ss_pred EEECCeecCCcCHHHHhcceEEEcCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCC
Q 000984 443 VLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQ 522 (1198)
Q Consensus 443 i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~ 522 (1198)
|.+||+|+++++.+++|++++||||+|++|++||+|||.++.+..++++++++++.++++++++.+|+|++|.+|++|.+
T Consensus 412 i~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~ 491 (598)
T 3qf4_B 412 ILVDGIDIRKIKRSSLRSSIGIVLQDTILFSTTVKENLKYGNPGATDEEIKEAAKLTHSDHFIKHLPEGYETVLTDNGED 491 (598)
T ss_dssp EEETTEEGGGSCHHHHHHHEEEECTTCCCCSSBHHHHHHSSSTTCCTTHHHHHTTTTTCHHHHHTSTTGGGCBCHHHHTT
T ss_pred EEECCEEhhhCCHHHHHhceEEEeCCCccccccHHHHHhcCCCCCCHHHHHHHHHHhCCHHHHHhccccccchhcCCCCC
Confidence 99999999999999999999999999999999999999999888888999999999999999999999999999999999
Q ss_pred CChHHHHHHhHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhCCCeEEEEecCcchhhccCEEEEEeCCEEEEec
Q 000984 523 LSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKG 602 (1198)
Q Consensus 523 lSgGqkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g 602 (1198)
||||||||++||||++++|+|||||||||+||+++++.+++.++++.+++|+|+||||++++..||+|++|++|+|++.|
T Consensus 492 LSgGq~Qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~~l~~G~i~~~g 571 (598)
T 3qf4_B 492 LSQGQRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKLMEGKTSIIIAHRLNTIKNADLIIVLRDGEIVEMG 571 (598)
T ss_dssp SCHHHHHHHHHHHHHHTCCSEEEECCCCTTCCHHHHHHHHHHHHHHHTTSEEEEESCCTTHHHHCSEEEEECSSSEEECS
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEEEEC
Confidence 99999999999999999999999999999999999999999999988899999999999999999999999999999999
Q ss_pred ChhhHhcCCCchhHHHHHHHh
Q 000984 603 THSKLVEDPEGAYSQLIRLQE 623 (1198)
Q Consensus 603 ~~~~l~~~~~~~~~~~~~~~~ 623 (1198)
+|+|++++ ++.|++++..+.
T Consensus 572 ~~~~l~~~-~~~~~~~~~~~~ 591 (598)
T 3qf4_B 572 KHDELIQK-RGFYYELFTSQY 591 (598)
T ss_dssp CHHHHHHT-TCHHHHHHHHHH
T ss_pred CHHHHHhC-CCHHHHHHHHHh
Confidence 99999987 788999987654
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-79 Score=756.38 Aligned_cols=570 Identities=31% Similarity=0.424 Sum_probs=489.1
Q ss_pred HHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCchhhHHHH----HHHHHHHHHHHHHHHHHHHH
Q 000984 47 YKLFTFADSADTALMIIGSIGAIGNGLCLPLMTLLFGDLINTFGDNQNNSETVDKV----SKVAVKFVYLGIGSGIASFL 122 (1198)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~~~~ 122 (1198)
+++++|.++..+. +++++++.++..++.++.+++++.+++......... ..... ..+...+++++++..++.++
T Consensus 3 ~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (578)
T 4a82_A 3 KRYLQFVKPYKYR-IFATIIVGIIKFGIPMLIPLLIKYAIDGVINNHALT-TDEKVHHLTIAIGIALFIFVIVRPPIEFI 80 (578)
T ss_dssp HHHHHHHGGGHHH-HHHHHHHHHTTTHHHHHHHHHHHHHHHHHTTCSSCC-HHHHHHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCch-hhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666655443 334445555555666667778888888765332210 01111 22233334445556677888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhccCCcchHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000984 123 QVTCWMITGERQATRIRGLYLKTILRQDVAFFDNETNTGEVVGRMSGDTVLIQDAMGEKVGKFLQLMATFLGGFLIAFIK 202 (1198)
Q Consensus 123 ~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~f~~~~~~G~i~~r~s~D~~~i~~~~~~~~~~~~~~~~~~i~~~i~~~~~ 202 (1198)
+.++..+.+.++..++|.++++++++.|+++|++ +++|++++|+++|++.+++.+...+..++..+..+++.+++++.+
T Consensus 81 ~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~~-~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~ 159 (578)
T 4a82_A 81 RQYLAQWTSNKILYDIRKKLYNHLQALSARFYAN-NQVGQVISRVINDVEQTKDFILTGLMNIWLDCITIIIALSIMFFL 159 (578)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHT-SCHHHHHHHHHHHHHHTHHHHHCCCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHcC-CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888999999999999999999999999997 499999999999999999998877777778888888888999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcHHHHHHHHHHHHHHHHHHHHH
Q 000984 203 GWLLTLVMLSSIPLLAMSGGVMAIMISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYKSGVQ 282 (1198)
Q Consensus 203 ~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~ 282 (1198)
+|.+++++++.+|+++++..++.+..++..++.++..++..+.+.|.++|+++||+|++|+.+.++|.+...+..+...+
T Consensus 160 ~~~l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~ 239 (578)
T 4a82_A 160 DVKLTLAALFIFPFYILTVYVFFGRLRKLTRERSQALAEVQGFLHERVQGISVVKSFAIEDNEAKNFDKKNTNFLTRALK 239 (578)
T ss_dssp CTTTHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHH
Confidence 99999999989999988888899998888888899999999999999999999999999999999999999888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 000984 283 EGLAAGIGLGMVMLIVFCSYALSVWYGGKLILEEGYNGGQVVNVMVAVLTGSMSLGEASPCLSAFGAGQAAAFKMFETIN 362 (1198)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~ 362 (1198)
...+.+....+..++..+..++.+++|++++..+.++.|.+++++.++.....++..+...+..+..+..+++|++++++
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~ri~~~l~ 319 (578)
T 4a82_A 240 HTRWNAYSFAAINTVTDIGPIIVIGVGAYLAISGSITVGTLAAFVGYLELLFGPLRRLVASFTTLTQSFASMDRVFQLID 319 (578)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHTHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 77777777777666767777778888999999999999999887766666667888888888999999999999999998
Q ss_pred cCCCCCccCCCCcccCCCcccEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCe
Q 000984 363 RKPEIDAYDTKGKILDDIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGE 442 (1198)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~g~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~ 442 (1198)
.+++.++.. ...+.++..+.|+++||+|+|++. ++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+
T Consensus 320 ~~~~~~~~~-~~~~~~~~~~~i~~~~v~~~y~~~-~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~ 397 (578)
T 4a82_A 320 EDYDIKNGV-GAQPIEIKQGRIDIDHVSFQYNDN-EAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQ 397 (578)
T ss_dssp CCCSSCCCT-TCCCCCCCSCCEEEEEEEECSCSS-SCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEE
T ss_pred CCCcccCCC-CccccCCCCCeEEEEEEEEEcCCC-CCcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCCCCCcE
Confidence 766533211 112223345789999999999753 457999999999999999999999999999999999999999999
Q ss_pred EEECCeecCCcCHHHHhcceEEEcCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCC
Q 000984 443 VLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQ 522 (1198)
Q Consensus 443 i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~ 522 (1198)
|.+||+|+++++.+++|++++||||+|++|++||+|||.+|.+..++++++++++.++++++++.+|+|++|.+|++|.+
T Consensus 398 i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~g~~t~~~~~g~~ 477 (578)
T 4a82_A 398 ILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVK 477 (578)
T ss_dssp EEETTEEGGGSCHHHHHHTEEEECSSCCCCSSBHHHHHGGGCSSCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTT
T ss_pred EEECCEEhhhCCHHHHhhheEEEeCCCccCcccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhCcchhhhhhccCCCc
Confidence 99999999999999999999999999999999999999999888899999999999999999999999999999999999
Q ss_pred CChHHHHHHhHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhCCCeEEEEecCcchhhccCEEEEEeCCEEEEec
Q 000984 523 LSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKG 602 (1198)
Q Consensus 523 lSgGqkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g 602 (1198)
||||||||++||||++++|++||||||||+||+++++.+.+.++++.+++|+|+||||+++++.||+|++|++|+|++.|
T Consensus 478 LSgGq~Qrv~lAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~~l~~G~i~~~g 557 (578)
T 4a82_A 478 LSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLSTITHADKIVVIENGHIVETG 557 (578)
T ss_dssp SCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSSGGGTTTCSEEEEEETTEEEEEE
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEEEEC
Confidence 99999999999999999999999999999999999999999999988899999999999999999999999999999999
Q ss_pred ChhhHhcCCCchhHHHHHHH
Q 000984 603 THSKLVEDPEGAYSQLIRLQ 622 (1198)
Q Consensus 603 ~~~~l~~~~~~~~~~~~~~~ 622 (1198)
+|+|++++ ++.|+++++.|
T Consensus 558 ~~~el~~~-~~~~~~~~~~q 576 (578)
T 4a82_A 558 THRELIAK-QGAYEHLYSIQ 576 (578)
T ss_dssp CHHHHHHT-TSHHHHHHTTT
T ss_pred CHHHHHhC-CcHHHHHHHhh
Confidence 99999987 67888887543
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-76 Score=732.70 Aligned_cols=566 Identities=31% Similarity=0.499 Sum_probs=487.4
Q ss_pred HHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000984 46 FYKLFTFADSADTALMIIGSIGAIGNGLCLPLMTLLFGDLINTFGDNQNNSETVDKVSKVAVKFVYLGIGSGIASFLQVT 125 (1198)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 125 (1198)
++.+++|.++..+. +++++++.++.+++.+..+++++.+++......+. .......+.+++++++..++.++..+
T Consensus 13 ~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (582)
T 3b5x_A 13 FKRLWTYIRLYKAG-LVVSTIALVINAAADTYMISLLKPLLDEGFGNAES----NFLRILPFMILGLMFVRGLSGFASSY 87 (582)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCch----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566665544332 33444555566666777777888888875432111 11111222244455667777888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCChhhhhccCCcchHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 000984 126 CWMITGERQATRIRGLYLKTILRQDVAFFDNETNTGEVVGRMSGDTVLIQDAMGEKVGKFLQLMATFLGGFLIAFIKGWL 205 (1198)
Q Consensus 126 ~~~~~~~~~~~~lr~~~~~~ll~~~~~~f~~~~~~G~i~~r~s~D~~~i~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~ 205 (1198)
+....+.++..++|..+++++++.|+.+|++ .++|++++|+++|++.+++.+...+..++..+..+++.++++++++|.
T Consensus 88 ~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~~-~~~g~l~~rl~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~ 166 (582)
T 3b5x_A 88 CLSWVSGNVVMQMRRRLFNHFMHMPVRFFDQ-ESTGGLLSRITYDSEQVAGATSRALVSIVREGASIIGLLTLMFWNSWQ 166 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCHHHHCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 8888999999999999999999999999997 499999999999999999999888888999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHH
Q 000984 206 LTLVMLSSIPLLAMSGGVMAIMISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYKSGVQEGL 285 (1198)
Q Consensus 206 l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 285 (1198)
+++++++.+|+++++..++.+..++..++.++..++..+.+.|.++|+++||+|++|+.+.++|.+..++..+...+...
T Consensus 167 l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 246 (582)
T 3b5x_A 167 LSLVLIVVAPVVAFAISFVSKRFRKISRNMQTAMGHVTSSAEQMLKGHKVVLSYGGQEVERKRFDKVSNSMRQQTMKLVS 246 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999888888888888888888888899999999999999999999999999999999999888888887777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC
Q 000984 286 AAGIGLGMVMLIVFCSYALSVWYGGKLILEEGYNGGQVVNVMVAVLTGSMSLGEASPCLSAFGAGQAAAFKMFETINRKP 365 (1198)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 365 (1198)
..+....+..++..+..++.+++|++++..+.++.|.+++++.+......++..+...+..+..+..+++|+.++++.++
T Consensus 247 ~~~~~~~~~~~~~~~~~~~i~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~~l~~~~ 326 (582)
T 3b5x_A 247 AQSIADPVIQMIASLALFAVLFLASVDSIRAELTPGTFTVVFSAMFGLMRPLKALTSVTSEFQRGMAACQTLFGLMDLET 326 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 77777666666677777778888999999999999999888877777778888888889999999999999999998755
Q ss_pred CCCccCCCCcccCCCcccEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEE
Q 000984 366 EIDAYDTKGKILDDIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLI 445 (1198)
Q Consensus 366 ~~~~~~~~~~~~~~~~g~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i 445 (1198)
+.++. ..+.++..+.|+++||+|+|+++ ++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.+
T Consensus 327 ~~~~~---~~~~~~~~~~i~~~~v~~~y~~~-~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~ 402 (582)
T 3b5x_A 327 ERDNG---KYEAERVNGEVDVKDVTFTYQGK-EKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICL 402 (582)
T ss_pred cCCCC---CCCCCCCCCeEEEEEEEEEcCCC-CccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEE
Confidence 43211 11112234679999999999743 257999999999999999999999999999999999999999999999
Q ss_pred CCeecCCcCHHHHhcceEEEcCCCCCCcccHHHHHhcCC-CCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCC
Q 000984 446 DGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGK-DDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLS 524 (1198)
Q Consensus 446 ~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~Ni~~~~-~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lS 524 (1198)
||+|+.+++.+++|++++||||+|++|++||+|||.++. ++.++++++++++.++++++++.+|+|++|.+|++|.+||
T Consensus 403 ~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~~~~LS 482 (582)
T 3b5x_A 403 DGHDVRDYKLTNLRRHFALVSQNVHLFNDTIANNIAYAAEGEYTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLS 482 (582)
T ss_pred CCEEhhhCCHHHHhcCeEEEcCCCccccccHHHHHhccCCCCCCHHHHHHHHHHCCCHHHHHhCcccccchhcCCCCcCC
Confidence 999999999999999999999999999999999999987 6678899999999999999999999999999999999999
Q ss_pred hHHHHHHhHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhCCCeEEEEecCcchhhccCEEEEEeCCEEEEecCh
Q 000984 525 GGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTH 604 (1198)
Q Consensus 525 gGqkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~ 604 (1198)
||||||++||||++++|++||||||||+||+++++.+.+.++++.+++|+|+||||++++..||+|++|++|++++.|+|
T Consensus 483 gGq~qr~~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g~~ 562 (582)
T 3b5x_A 483 GGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQKNKTVLVIAHRLSTIEQADEILVVDEGEIIERGRH 562 (582)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHhCCEEEEEECCEEEEECCH
Confidence 99999999999999999999999999999999999999999998889999999999999999999999999999999999
Q ss_pred hhHhcCCCchhHHHHHHH
Q 000984 605 SKLVEDPEGAYSQLIRLQ 622 (1198)
Q Consensus 605 ~~l~~~~~~~~~~~~~~~ 622 (1198)
+|++++ ++.|+++++.|
T Consensus 563 ~~l~~~-~~~~~~~~~~q 579 (582)
T 3b5x_A 563 ADLLAQ-DGAYAQLHRIQ 579 (582)
T ss_pred HHHHhC-CcHHHHHHHHh
Confidence 999986 67899888765
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-76 Score=733.30 Aligned_cols=566 Identities=32% Similarity=0.525 Sum_probs=486.4
Q ss_pred HHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000984 46 FYKLFTFADSADTALMIIGSIGAIGNGLCLPLMTLLFGDLINTFGDNQNNSETVDKVSKVAVKFVYLGIGSGIASFLQVT 125 (1198)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 125 (1198)
++.+++|.++..+. +++++++.++..++.+..+++++.+++......+ ........+.+++++++..++.++..+
T Consensus 13 ~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (582)
T 3b60_A 13 FRRLWPTIAPFKAG-LIVAGIALILNAASDTFMLSLLKPLLDDGFGKTD----RSVLLWMPLVVIGLMILRGITSYISSY 87 (582)
T ss_dssp HHHHHHHHGGGHHH-HHHHHHHHHHHHHHHHHHHHHHTHHHHSSTTSTT----HHHHHHSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc----hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666554333 3344455556666667777788888886542211 111111122244455667777888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCChhhhhccCCcchHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 000984 126 CWMITGERQATRIRGLYLKTILRQDVAFFDNETNTGEVVGRMSGDTVLIQDAMGEKVGKFLQLMATFLGGFLIAFIKGWL 205 (1198)
Q Consensus 126 ~~~~~~~~~~~~lr~~~~~~ll~~~~~~f~~~~~~G~i~~r~s~D~~~i~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~ 205 (1198)
.....+.++..++|..+++++++.|+.+|++. ++|++++|+++|++.+++.+...+..++..+..+++.+++++.++|.
T Consensus 88 ~~~~~~~~~~~~lr~~l~~~l~~~~~~~~~~~-~~g~l~~r~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~ 166 (582)
T 3b60_A 88 CISWVSGKVVMTMRRRLFGHMMGMPVAFFDKQ-STGTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQ 166 (582)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCCSTHHHHS-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCHHHHCCC-ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 88888999999999999999999999999974 99999999999999999999988889999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHH
Q 000984 206 LTLVMLSSIPLLAMSGGVMAIMISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYKSGVQEGL 285 (1198)
Q Consensus 206 l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 285 (1198)
+++++++.+|+++++..++.+..++..++.++..++..+.+.|.++|+++||+|++|+.+.++|.+..++..+...+...
T Consensus 167 l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 246 (582)
T 3b60_A 167 LSIILVVLAPIVSIAIRVVSKRFRSISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNKMRLQGMKMVS 246 (582)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99998889999888888888888888888888899999999999999999999999999999999998888888877777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC
Q 000984 286 AAGIGLGMVMLIVFCSYALSVWYGGKLILEEGYNGGQVVNVMVAVLTGSMSLGEASPCLSAFGAGQAAAFKMFETINRKP 365 (1198)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 365 (1198)
..+....+..++..+..++.+++|++++..+.++.|.+++++.+......++..+...+..+..+..+.+|+.++++.++
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~~l~~~~ 326 (582)
T 3b60_A 247 ASSISDPIIQLIASLALAFVLYAASFPSVMDSLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDSEQ 326 (582)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSSSTTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 77776666666666677777888888888899999999888877777778888888889999999999999999998765
Q ss_pred CCCccCCCCcccCCCcccEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEE
Q 000984 366 EIDAYDTKGKILDDIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLI 445 (1198)
Q Consensus 366 ~~~~~~~~~~~~~~~~g~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i 445 (1198)
+.++ . ..+.++..+.|+++||+|+|+++ ++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.+
T Consensus 327 ~~~~-~--~~~~~~~~~~i~~~~v~~~y~~~-~~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~ 402 (582)
T 3b60_A 327 EKDE-G--KRVIDRATGDLEFRNVTFTYPGR-EVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILM 402 (582)
T ss_dssp SCCC-C--CBCCSCCCCCEEEEEEEECSSSS-SCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEE
T ss_pred CccC-C--CCCCCCCCCcEEEEEEEEEcCCC-CCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccCCCCCeEEE
Confidence 4321 1 11122335679999999999742 256999999999999999999999999999999999999999999999
Q ss_pred CCeecCCcCHHHHhcceEEEcCCCCCCcccHHHHHhcCC-CCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCC
Q 000984 446 DGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGK-DDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLS 524 (1198)
Q Consensus 446 ~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~Ni~~~~-~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lS 524 (1198)
||+|+++++.+++|++++||||+|++|++||+|||.++. ++.++++++++++.++++++++++|+|++|.+|++|.+||
T Consensus 403 ~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~~~~LS 482 (582)
T 3b60_A 403 DGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLS 482 (582)
T ss_dssp TTEETTTBCHHHHHHTEEEECSSCCCCSSBHHHHHHTTTTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSC
T ss_pred CCEEccccCHHHHHhhCeEEccCCcCCCCCHHHHHhccCCCCCCHHHHHHHHHHcCCHHHHHhccccccccccCCCCCCC
Confidence 999999999999999999999999999999999999987 6678899999999999999999999999999999999999
Q ss_pred hHHHHHHhHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhCCCeEEEEecCcchhhccCEEEEEeCCEEEEecCh
Q 000984 525 GGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTH 604 (1198)
Q Consensus 525 gGqkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~ 604 (1198)
||||||++||||++++|++||||||||+||+++++.+.+.++++.+++|+|+||||++.+..||+|++|++|++++.|+|
T Consensus 483 gGq~qrl~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g~~ 562 (582)
T 3b60_A 483 GGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEQADEIVVVEDGIIVERGTH 562 (582)
T ss_dssp HHHHHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHTTSEEEEECSCGGGTTTCSEEEEEETTEEEEEECH
T ss_pred HHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHhCCEEEEEECCEEEEecCH
Confidence 99999999999999999999999999999999999999999998889999999999999999999999999999999999
Q ss_pred hhHhcCCCchhHHHHHHH
Q 000984 605 SKLVEDPEGAYSQLIRLQ 622 (1198)
Q Consensus 605 ~~l~~~~~~~~~~~~~~~ 622 (1198)
+|++++ ++.|+++++.|
T Consensus 563 ~~l~~~-~~~~~~~~~~q 579 (582)
T 3b60_A 563 SELLAQ-HGVYAQLHKMQ 579 (582)
T ss_dssp HHHHHH-TSSHHHHHHHT
T ss_pred HHHHHc-CCHHHHHHHHh
Confidence 999876 67888888754
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-75 Score=772.69 Aligned_cols=581 Identities=38% Similarity=0.649 Sum_probs=497.3
Q ss_pred cchHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 000984 43 SVPFYKLFTFADSADTALMIIGSIGAIGNGLCLPLMTLLFGDLINTFGDNQNNSETVDKVSKVAVKFVYLGIGSGIASFL 122 (1198)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 122 (1198)
..++++++++.++. +..++++++++++.+.+.|..+++++.+++.+...............+.+++++++++..++.++
T Consensus 690 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~ 768 (1284)
T 3g5u_A 690 PASFWRILKLNSTE-WPYFVVGIFCAIINGGLQPAFSVIFSKVVGVFTNGGPPETQRQNSNLFSLLFLILGIISFITFFL 768 (1284)
T ss_dssp CCCTTHHHHHHHHT-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHhcch-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456666665443 33345566667777788899898998888876543221122233344555666777778888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhc-cCCcchHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000984 123 QVTCWMITGERQATRIRGLYLKTILRQDVAFFDN-ETNTGEVVGRMSGDTVLIQDAMGEKVGKFLQLMATFLGGFLIAFI 201 (1198)
Q Consensus 123 ~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~f~~-~~~~G~i~~r~s~D~~~i~~~~~~~~~~~~~~~~~~i~~~i~~~~ 201 (1198)
+.+++.+.+.++..++|..++++++++|++|||. .+++|++++|+++|++.++..++..+..++..+..+++.+++++.
T Consensus 769 ~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~ff~~~~~~~G~l~~rl~~D~~~i~~~~~~~l~~~~~~~~~~~~~~i~~~~ 848 (1284)
T 3g5u_A 769 QGFTFGKAGEILTKRLRYMVFKSMLRQDVSWFDDPKNTTGALTTRLANDAAQVKGATGSRLAVIFQNIANLGTGIIISLI 848 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCSHHHHSCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8889999999999999999999999999999994 258999999999999999999999999999999999999999999
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcHHHHHHHHHHHHHHHHHHHH
Q 000984 202 KGWLLTLVMLSSIPLLAMSGGVMAIMISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYKSGV 281 (1198)
Q Consensus 202 ~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~ 281 (1198)
++|.+++++++++|+++++..+..++.++...+..+..++....+.|++.|+++||+|++|+.+.++|.+..+...+...
T Consensus 849 ~~~~l~lv~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~ti~a~~~e~~~~~~~~~~~~~~~~~~~ 928 (1284)
T 3g5u_A 849 YGWQLTLLLLAIVPIIAIAGVVEMKMLSGQALKDKKELEGSGKIATEAIENFRTVVSLTREQKFETMYAQSLQIPYRNAM 928 (1284)
T ss_dssp SCSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTTTTCSSHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999888888888888777778888888999999999999999999999999999999888888877
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000984 282 QEGLAAGIGLGMVMLIVFCSYALSVWYGGKLILEEGYNGGQVVNVMVAVLTGSMSLGEASPCLSAFGAGQAAAFKMFETI 361 (1198)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~ 361 (1198)
+...+.+....+...+.++.+++.+|+|+.++..+.++.+.++.++..+.....++..+......+..+..++.|+++.+
T Consensus 929 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~l 1008 (1284)
T 3g5u_A 929 KKAHVFGITFSFTQAMMYFSYAAAFRFGAYLVTQQLMTFENVLLVFSAIVFGAMAVGQVSSFAPDYAKATVSASHIIRII 1008 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSSCSCSTTHHHHHHHHHHHHHHHHHHTSSSCCSTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777787777777777888888899999888888888887776655555444555555444555667888999999999
Q ss_pred ccCCCCCccCCCCcccCCCcccEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCC
Q 000984 362 NRKPEIDAYDTKGKILDDIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAG 441 (1198)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~g~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G 441 (1198)
+.+++.+........+++..|.|+++||+|+|+++++.++|+|+||+|++||++|||||||||||||+++|+|+++|++|
T Consensus 1009 ~~~~~~~~~~~~~~~~~~~~g~i~~~~v~~~y~~~~~~~~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~p~~G 1088 (1284)
T 3g5u_A 1009 EKTPEIDSYSTQGLKPNMLEGNVQFSGVVFNYPTRPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAG 1088 (1284)
T ss_dssp HSCCSSSSCCSSCCCTTTTSCCEEEEEEEBCCSCGGGCCSBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTSSCCSEE
T ss_pred cCCCcccccccccccccCCCCcEEEEEEEEECCCCCCCeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCC
Confidence 87766443222222333456789999999999865455799999999999999999999999999999999999999999
Q ss_pred eEEECCeecCCcCHHHHhcceEEEcCCCCCCcccHHHHHhcCCC--CCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCC
Q 000984 442 EVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKD--DATTEEIRVATELANAAKFIDKLPQGIDTLVGEH 519 (1198)
Q Consensus 442 ~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~Ni~~~~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~ 519 (1198)
+|.+||+|+++++.+++|++|+||||||.+|++||+|||.++.+ ..++++++++++.+++++++..+|+|+||.+||+
T Consensus 1089 ~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~eNi~~~~~~~~~~~~~i~~~~~~~~~~~~i~~l~~gldt~vge~ 1168 (1284)
T 3g5u_A 1089 SVFLDGKEIKQLNVQWLRAQLGIVSQEPILFDCSIAENIAYGDNSRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDK 1168 (1284)
T ss_dssp EEESSSSCTTSSCHHHHTTSCEEEESSCCCCSSBHHHHHTCCCSSCCCCHHHHHHHHHHHTCHHHHSSTTTGGGCBCSTT
T ss_pred EEEECCEEcccCCHHHHHhceEEECCCCccccccHHHHHhccCCCCCCCHHHHHHHHHHhCcHHHHHhCccccccccCCC
Confidence 99999999999999999999999999999999999999999875 3678999999999999999999999999999999
Q ss_pred CCCCChHHHHHHhHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhCCCeEEEEecCcchhhccCEEEEEeCCEEE
Q 000984 520 GTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIV 599 (1198)
Q Consensus 520 g~~lSgGqkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~ 599 (1198)
|.+||||||||+||||||+++|+|||||||||+||+++++.+++.+++..+++|+|+||||++++..||||+||++|+|+
T Consensus 1169 G~~LSgGq~Qrv~iARal~~~p~iLiLDEpTs~lD~~~~~~i~~~l~~~~~~~tvi~isH~l~~i~~~dri~vl~~G~i~ 1248 (1284)
T 3g5u_A 1169 GTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKAREGRTCIVIAHRLSTIQNADLIVVIQNGKVK 1248 (1284)
T ss_dssp SCSSCHHHHHHHHHHHHHHHCCSSEEEESCSSSCCHHHHHHHHHHHHHHSSSSCEEEECSCTTGGGSCSEEEEEETBEEE
T ss_pred CCccCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHhCCCCEEEEEecCHHHHHcCCEEEEEECCEEE
Confidence 99999999999999999999999999999999999999999999999988899999999999999999999999999999
Q ss_pred EecChhhHhcCCCchhHHHHHHHhhc
Q 000984 600 EKGTHSKLVEDPEGAYSQLIRLQEAN 625 (1198)
Q Consensus 600 ~~g~~~~l~~~~~~~~~~~~~~~~~~ 625 (1198)
|.|+|+||+++ ++.|+++++.|...
T Consensus 1249 ~~g~~~~l~~~-~g~y~~l~~~q~~~ 1273 (1284)
T 3g5u_A 1249 EHGTHQQLLAQ-KGIYFSMVSVQAGA 1273 (1284)
T ss_dssp EEECHHHHHHS-CSHHHHHHHHHC--
T ss_pred EECCHHHHHhC-CCHHHHHHHHHhhc
Confidence 99999999987 78999999877533
|
| >3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-59 Score=579.32 Aligned_cols=463 Identities=21% Similarity=0.307 Sum_probs=414.6
Q ss_pred hHhhhhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000984 707 TRRLAYLNKPEIPVILAGTIAAMANGVILPIYGLLISSVIETFFKPPHELKKDSRFWALIYLALGAGSFLLSPAQSYFFA 786 (1198)
Q Consensus 707 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 (1198)
+++++.+.+++++.+++++++.++.+++....+++++.+++......+ ......+.++++++.++..++.+++.++..
T Consensus 11 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (587)
T 3qf4_A 11 SKTLARYLKPYWIFAVLAPLFMVVEVICDLSQPTLLARIVDEGIARGD--FSLVLKTGILMLIVALIGAVGGIGCTVFAS 88 (587)
T ss_dssp CCCGGGGTGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666778888888888888888888889999999999997653221 122233445555666777888888999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhCcccccccCCCChhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q 000984 787 VAGNKLIQRIRSMCFEKVIHMEVSWFDEPEHSSGAIGARLSADAASVRALVGDALARIVQNISTAAAGLIIAFTASWQLA 866 (1198)
Q Consensus 787 ~~~~~~~~~Lr~~l~~~ll~~p~~fFd~~~~~~G~i~~r~s~D~~~i~~~l~~~l~~~i~~~~~~i~~li~~~~~~~~l~ 866 (1198)
+.+.++..++|.++|+|++++|+.||+ ++++|++++|+++|++.+++.+...+..++..++.++++++++++++|+++
T Consensus 89 ~~~~~~~~~lr~~l~~~ll~~~~~~~~--~~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~ 166 (587)
T 3qf4_A 89 YASQNFGADLRRDLFRKVLSFSISNVN--RFHTSSLITRLTNDVTQLQNLVMMLLRIVVRAPLLFVGGIVMAVSINVKLS 166 (587)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCHHHHH--HSCHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHCTTTT
T ss_pred HHHHHHHHHHHHHHHHHHHCCCHHHHc--cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999 589999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhchhHHHHHhcchHHHHHHHHHHhhhHHHHhHHHHHHH
Q 000984 867 LIILVMLPLIGVSGYTQMKFMKGFSADAKMKYEEASQVANDAVGSIRTVASFCAEEKVMQLYKKKCEAPMKTGIRQGMVS 946 (1198)
Q Consensus 867 l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 946 (1198)
+++++++|+++++.+++.++.++..++.++..++.++.+.|.++|+++||+|++|+.+.++|.+..++..+...+.....
T Consensus 167 l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (587)
T 3qf4_A 167 SVLIFLIPPIVLLFVWLTKKGNPLFRKIQESTDEVNRVVRENLLGVRVVRAFRREEYENENFRKANESLRRSIISAFSLI 246 (587)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999998899999999999999999999999999999999999999999999999988888888
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhcCCCCC
Q 000984 947 GGGFGASFFLLFAFYAASFYAGARLVEDGKATFSDVFKVFFSLTMTAIGISQSSSFSSDSNKAKSAAASIFAIIDRESKI 1026 (1198)
Q Consensus 947 ~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~~t~g~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~ 1026 (1198)
....++..++..+..++++++|++++..|.+++|.++++..+...+..|+..+......++++..+++|+.++++.+++.
T Consensus 247 ~~~~~~~~~~~~~~~~~vl~~g~~~v~~g~lt~g~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~ 326 (587)
T 3qf4_A 247 VFALPLFIFIVNMGMIAVLWFGGVLVRNNQMEIGSIMAYTNYLMQIMFSLMMIGNILNFIVRASASAKRVLEVLNEKPAI 326 (587)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcc
Confidence 88888888888888889999999999999999999999999999999999999999999999999999999999977654
Q ss_pred CCCCCCCCcccCCcccEEEeeeeEECCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECC
Q 000984 1027 DPSDESGTILEDVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDG 1106 (1198)
Q Consensus 1027 ~~~~~~~~~~~~~~G~I~f~nVsf~Y~~~~~~~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG 1106 (1198)
++... ....++..|.|+|+||+|+|+++ ++++|+|+||+|++||++|||||||||||||+++|+|+|+|++|+|++||
T Consensus 327 ~~~~~-~~~~~~~~~~i~~~~v~~~y~~~-~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~i~g 404 (587)
T 3qf4_A 327 EEADN-ALALPNVEGSVSFENVEFRYFEN-TDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDE 404 (587)
T ss_dssp CCCTT-CBCCSCCCCCEEEEEEEECSSSS-SCCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSCCSEEEEEESS
T ss_pred CCCCC-ccccCCCCCcEEEEEEEEEcCCC-CCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCcEEEECC
Confidence 32221 11223456889999999999743 45799999999999999999999999999999999999999999999999
Q ss_pred cccCCCChHHHHhhcceeccccccccccHHHHHhcCCCCCCCHHHHHHHHHHcchHHHHHhcccccccee
Q 000984 1107 VEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQVRTSRL 1176 (1198)
Q Consensus 1107 ~dI~~i~l~~LR~~IsiV~Qdp~LF~gTIreNI~~g~~~~~tdeei~~Al~~A~l~dfI~~LP~g~dt~v 1176 (1198)
+|+++++.+++|++|++|||||.||++||+|||++|. ++++++++++|++.++++|++++||+|+||.+
T Consensus 405 ~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~eni~~~~-~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~~ 473 (587)
T 3qf4_A 405 LDVRTVKLKDLRGHISAVPQETVLFSGTIKENLKWGR-EDATDDEIVEAAKIAQIHDFIISLPEGYDSRV 473 (587)
T ss_dssp SBGGGBCHHHHHHHEEEECSSCCCCSEEHHHHHTTTC-SSCCHHHHHHHHHHTTCHHHHHTSSSGGGCEE
T ss_pred EEcccCCHHHHHhheEEECCCCcCcCccHHHHHhccC-CCCCHHHHHHHHHHhCcHHHHHhcccchhhHh
Confidence 9999999999999999999999999999999999995 47899999999999999999999999999976
|
| >3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.2e-59 Score=575.23 Aligned_cols=463 Identities=25% Similarity=0.370 Sum_probs=419.0
Q ss_pred chhHhhhhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 000984 705 VPTRRLAYLNKPEIPVILAGTIAAMANGVILPIYGLLISSVIETFFKPPHELKKDSRFWALIYLALGAGSFLLSPAQSYF 784 (1198)
Q Consensus 705 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 784 (1198)
..+++++.+.+++++.++.++++.++.+++....+++++.+++....... ......++++++++.++..++.+++.++
T Consensus 23 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (598)
T 3qf4_B 23 ATLRRLLGYLRPHTFTLIMVFVFVTVSSILGVLSPYLIGKTIDVVFVPRR--FDLLPRYMLILGTIYALTSLLFWLQGKI 100 (598)
T ss_dssp HHHHHHGGGTGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTC--GGGHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567777788888888888888888888899999999999997754321 1223445666677778888899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCcccccccCCCChhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 000984 785 FAVAGNKLIQRIRSMCFEKVIHMEVSWFDEPEHSSGAIGARLSADAASVRALVGDALARIVQNISTAAAGLIIAFTASWQ 864 (1198)
Q Consensus 785 ~~~~~~~~~~~Lr~~l~~~ll~~p~~fFd~~~~~~G~i~~r~s~D~~~i~~~l~~~l~~~i~~~~~~i~~li~~~~~~~~ 864 (1198)
....+.++..++|.++|+|++++|++||+ ++++|++++|+++|++.+++.+...+..++..++.++++++++++++|+
T Consensus 101 ~~~~~~~~~~~lr~~l~~~ll~~~~~~~~--~~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~ 178 (598)
T 3qf4_B 101 MLTLSQDVVFRLRKELFEKLQRVPVGFFD--RTPHGDIISRVINDVDNINNVLGNSIIQFFSGIVTLAGAVIMMFRVNVI 178 (598)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSCTHHHH--HSCHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCHHHHc--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999 5899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhchhHHHHHhcchHHHHHHHHHHhhhHHHHhHHHHH
Q 000984 865 LALIILVMLPLIGVSGYTQMKFMKGFSADAKMKYEEASQVANDAVGSIRTVASFCAEEKVMQLYKKKCEAPMKTGIRQGM 944 (1198)
Q Consensus 865 l~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~ 944 (1198)
+++++++++|+++++..++.++.++..++.++..++..+.+.|.++|+++||+|++|+.+.++|.+..++..+...+...
T Consensus 179 l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 258 (598)
T 3qf4_B 179 LSLVTLSIVPLTVLITQIVSSQTRKYFYENQRVLGQLNGIIEEDISGLTVIKLFTREEKEMEKFDRVNESLRKVGTKAQI 258 (598)
T ss_dssp HHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999988999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhcCCC
Q 000984 945 VSGGGFGASFFLLFAFYAASFYAGARLVEDGKATFSDVFKVFFSLTMTAIGISQSSSFSSDSNKAKSAAASIFAIIDRES 1024 (1198)
Q Consensus 945 ~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~~t~g~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~~~~ 1024 (1198)
..+...++..++..+..++++++|++++..|.+++|.+++++.+...+..|+..+......++.+..+++|+.++++.++
T Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~ls~g~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~ri~~~l~~~~ 338 (598)
T 3qf4_B 259 FSGVLPPLMNMVNNLGFALISGFGGWLALKDIITVGTIATFIGYSRQFTRPLNELSNQFNMIQMALASAERIFEILDLEE 338 (598)
T ss_dssp HTTTHHHHHHHHHHHHHHHHHHHHHHHGGGTSSCHHHHHHHHTTTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 88888888888888888899999999999999999999999999999999999999999999999999999999999876
Q ss_pred CCCCCCCCCCcccCCcccEEEeeeeEECCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEE
Q 000984 1025 KIDPSDESGTILEDVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITL 1104 (1198)
Q Consensus 1025 ~~~~~~~~~~~~~~~~G~I~f~nVsf~Y~~~~~~~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~I 1104 (1198)
+.+.. .....++..|+|+|+||+|+|++ +.++|+|+||+|++||++|||||||||||||+++|+|+|+|++|+|.+
T Consensus 339 ~~~~~--~~~~~~~~~~~i~~~~v~~~y~~--~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~ 414 (598)
T 3qf4_B 339 EKDDP--DAVELREVRGEIEFKNVWFSYDK--KKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILV 414 (598)
T ss_dssp CCCCS--SCCCCCSCCCCEEEEEEECCSSS--SSCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSCCSEEEEEE
T ss_pred CCCCC--CCCCCCCCCCeEEEEEEEEECCC--CCccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcCCCCeEEEE
Confidence 54321 11222345688999999999963 346999999999999999999999999999999999999999999999
Q ss_pred CCcccCCCChHHHHhhcceeccccccccccHHHHHhcCCCCCCCHHHHHHHHHHcchHHHHHhcccccccee
Q 000984 1105 DGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQVRTSRL 1176 (1198)
Q Consensus 1105 DG~dI~~i~l~~LR~~IsiV~Qdp~LF~gTIreNI~~g~~~~~tdeei~~Al~~A~l~dfI~~LP~g~dt~v 1176 (1198)
||+|+++++.+++|++|++|||||.||++||+|||.+|+ ++++++++++|++.++++++++++|+|+||.+
T Consensus 415 ~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~eni~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~ 485 (598)
T 3qf4_B 415 DGIDIRKIKRSSLRSSIGIVLQDTILFSTTVKENLKYGN-PGATDEEIKEAAKLTHSDHFIKHLPEGYETVL 485 (598)
T ss_dssp TTEEGGGSCHHHHHHHEEEECTTCCCCSSBHHHHHHSSS-TTCCTTHHHHHTTTTTCHHHHHTSTTGGGCBC
T ss_pred CCEEhhhCCHHHHHhceEEEeCCCccccccHHHHHhcCC-CCCCHHHHHHHHHHhCCHHHHHhccccccchh
Confidence 999999999999999999999999999999999999995 46899999999999999999999999999975
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-58 Score=571.57 Aligned_cols=465 Identities=24% Similarity=0.335 Sum_probs=414.0
Q ss_pred HhhhhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCch-hhhhh----HHHHHHHHHHHHHHHHHHHHHH
Q 000984 708 RRLAYLNKPEIPVILAGTIAAMANGVILPIYGLLISSVIETFFKPPHE-LKKDS----RFWALIYLALGAGSFLLSPAQS 782 (1198)
Q Consensus 708 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~----~~~~~~~~~~~~~~~~~~~~~~ 782 (1198)
++++.+.+++++.++.++++.++..++.+..+++++.+++........ ..... ..+.++++++.++..++.+++.
T Consensus 3 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (578)
T 4a82_A 3 KRYLQFVKPYKYRIFATIIVGIIKFGIPMLIPLLIKYAIDGVINNHALTTDEKVHHLTIAIGIALFIFVIVRPPIEFIRQ 82 (578)
T ss_dssp HHHHHHHGGGHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456667788888888888888888888888999999999877543211 01111 2233444555667778889999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCcccccccCCCChhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 000984 783 YFFAVAGNKLIQRIRSMCFEKVIHMEVSWFDEPEHSSGAIGARLSADAASVRALVGDALARIVQNISTAAAGLIIAFTAS 862 (1198)
Q Consensus 783 ~~~~~~~~~~~~~Lr~~l~~~ll~~p~~fFd~~~~~~G~i~~r~s~D~~~i~~~l~~~l~~~i~~~~~~i~~li~~~~~~ 862 (1198)
++..+.+.++..++|.++|+|++++|++||+ ++++|++++|+++|++.+++++...+..++..++.++++++++++++
T Consensus 83 ~~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~--~~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~ 160 (578)
T 4a82_A 83 YLAQWTSNKILYDIRKKLYNHLQALSARFYA--NNQVGQVISRVINDVEQTKDFILTGLMNIWLDCITIIIALSIMFFLD 160 (578)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSCHHHHH--TSCHHHHHHHHHHHHHHTHHHHHCCCCCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHc--CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999 58999999999999999999999988889999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhchhHHHHHhcchHHHHHHHHHHhhhHHHHhHHH
Q 000984 863 WQLALIILVMLPLIGVSGYTQMKFMKGFSADAKMKYEEASQVANDAVGSIRTVASFCAEEKVMQLYKKKCEAPMKTGIRQ 942 (1198)
Q Consensus 863 ~~l~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIraf~~e~~~~~~~~~~~~~~~~~~~~~ 942 (1198)
|++++++++++|+++++.+++.++.++..++.++..++..+.+.|.++|+++||+|++|+.+.++|.+..++..+...+.
T Consensus 161 ~~l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~ 240 (578)
T 4a82_A 161 VKLTLAALFIFPFYILTVYVFFGRLRKLTRERSQALAEVQGFLHERVQGISVVKSFAIEDNEAKNFDKKNTNFLTRALKH 240 (578)
T ss_dssp TTTHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhcC
Q 000984 943 GMVSGGGFGASFFLLFAFYAASFYAGARLVEDGKATFSDVFKVFFSLTMTAIGISQSSSFSSDSNKAKSAAASIFAIIDR 1022 (1198)
Q Consensus 943 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~~t~g~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~~ 1022 (1198)
....+...++...+..+..++++++|++++..|.+++|.++++..+...+..|+..+......++++..+++|+.++++.
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~v~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~ri~~~l~~ 320 (578)
T 4a82_A 241 TRWNAYSFAAINTVTDIGPIIVIGVGAYLAISGSITVGTLAAFVGYLELLFGPLRRLVASFTTLTQSFASMDRVFQLIDE 320 (578)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHTHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 88888888888888888888999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCCCCCCCCCCcccCCcccEEEeeeeEECCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeE
Q 000984 1023 ESKIDPSDESGTILEDVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHI 1102 (1198)
Q Consensus 1023 ~~~~~~~~~~~~~~~~~~G~I~f~nVsf~Y~~~~~~~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I 1102 (1198)
+++.++... ..+.++..|.|+++||+|+|+++ +.++|+|+||+|++||++|||||||||||||+++|+|+|+|++|+|
T Consensus 321 ~~~~~~~~~-~~~~~~~~~~i~~~~v~~~y~~~-~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i 398 (578)
T 4a82_A 321 DYDIKNGVG-AQPIEIKQGRIDIDHVSFQYNDN-EAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQI 398 (578)
T ss_dssp CCSSCCCTT-CCCCCCCSCCEEEEEEEECSCSS-SCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEE
T ss_pred CCcccCCCC-ccccCCCCCeEEEEEEEEEcCCC-CCcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEE
Confidence 766432211 11223356889999999999753 4579999999999999999999999999999999999999999999
Q ss_pred EECCcccCCCChHHHHhhcceeccccccccccHHHHHhcCCCCCCCHHHHHHHHHHcchHHHHHhccccccceee
Q 000984 1103 TLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQVRTSRLL 1177 (1198)
Q Consensus 1103 ~IDG~dI~~i~l~~LR~~IsiV~Qdp~LF~gTIreNI~~g~~~~~tdeei~~Al~~A~l~dfI~~LP~g~dt~v~ 1177 (1198)
.+||+|+++++.+++|++|++|||||.||++||+|||.+|. ++.+++++++|++.++++++++++|+|+||.+-
T Consensus 399 ~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~tv~eni~~~~-~~~~~~~~~~~~~~~~~~~~~~~lp~g~~t~~~ 472 (578)
T 4a82_A 399 LIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLGR-PTATDEEVVEAAKMANAHDFIMNLPQGYDTEVG 472 (578)
T ss_dssp EETTEEGGGSCHHHHHHTEEEECSSCCCCSSBHHHHHGGGC-SSCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCC
T ss_pred EECCEEhhhCCHHHHhhheEEEeCCCccCcccHHHHHhcCC-CCCCHHHHHHHHHHhCcHHHHHhCcchhhhhhc
Confidence 99999999999999999999999999999999999999995 468999999999999999999999999999863
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-57 Score=561.99 Aligned_cols=461 Identities=25% Similarity=0.348 Sum_probs=409.2
Q ss_pred hHhhhhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhhhhHHHH-HHHHHHHHHHHHHHHHHHHHH
Q 000984 707 TRRLAYLNKPEIPVILAGTIAAMANGVILPIYGLLISSVIETFFKPPHELKKDSRFWA-LIYLALGAGSFLLSPAQSYFF 785 (1198)
Q Consensus 707 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 785 (1198)
+++++.+.+++++.+++++++.++.+++....++++..+++....... . ....+. ++++++.++..++.+++.++.
T Consensus 13 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (582)
T 3b5x_A 13 FKRLWTYIRLYKAGLVVSTIALVINAAADTYMISLLKPLLDEGFGNAE--S-NFLRILPFMILGLMFVRGLSGFASSYCL 89 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc--h-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556666777777777778888888888888999998887643211 1 112222 335556677888889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCcccccccCCCChhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 000984 786 AVAGNKLIQRIRSMCFEKVIHMEVSWFDEPEHSSGAIGARLSADAASVRALVGDALARIVQNISTAAAGLIIAFTASWQL 865 (1198)
Q Consensus 786 ~~~~~~~~~~Lr~~l~~~ll~~p~~fFd~~~~~~G~i~~r~s~D~~~i~~~l~~~l~~~i~~~~~~i~~li~~~~~~~~l 865 (1198)
...+.++..++|.++|+|++++|++||+ ++++|++++|+++|++.+++.+...+..++..++.+++.++++++++|++
T Consensus 90 ~~~~~~~~~~lr~~l~~~ll~~~~~~~~--~~~~g~l~~rl~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l 167 (582)
T 3b5x_A 90 SWVSGNVVMQMRRRLFNHFMHMPVRFFD--QESTGGLLSRITYDSEQVAGATSRALVSIVREGASIIGLLTLMFWNSWQL 167 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCHHHHC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 9999999999999999999999999999 58899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhchhHHHHHhcchHHHHHHHHHHhhhHHHHhHHHHHH
Q 000984 866 ALIILVMLPLIGVSGYTQMKFMKGFSADAKMKYEEASQVANDAVGSIRTVASFCAEEKVMQLYKKKCEAPMKTGIRQGMV 945 (1198)
Q Consensus 866 ~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~~ 945 (1198)
++++++++|+++++..++.++.++..++.++..++..+.+.|.++|+++||+|+.|+.+.++|.+..++..+...+....
T Consensus 168 ~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 247 (582)
T 3b5x_A 168 SLVLIVVAPVVAFAISFVSKRFRKISRNMQTAMGHVTSSAEQMLKGHKVVLSYGGQEVERKRFDKVSNSMRQQTMKLVSA 247 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999988888899988888899999999999999999999999999999999999999999999999999998
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhcCCCC
Q 000984 946 SGGGFGASFFLLFAFYAASFYAGARLVEDGKATFSDVFKVFFSLTMTAIGISQSSSFSSDSNKAKSAAASIFAIIDRESK 1025 (1198)
Q Consensus 946 ~~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~~t~g~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~~~~~ 1025 (1198)
.....++..++..+..++++++|++++..|.+++|.++++..+...+..|+..+......++++..+++|+.++++.+++
T Consensus 248 ~~~~~~~~~~~~~~~~~~i~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~~l~~~~~ 327 (582)
T 3b5x_A 248 QSIADPVIQMIASLALFAVLFLASVDSIRAELTPGTFTVVFSAMFGLMRPLKALTSVTSEFQRGMAACQTLFGLMDLETE 327 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCc
Confidence 88888888888888888899999999999999999999999999999999999999999999999999999999987665
Q ss_pred CCCCCCCCCcccCCcccEEEeeeeEECCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEEC
Q 000984 1026 IDPSDESGTILEDVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLD 1105 (1198)
Q Consensus 1026 ~~~~~~~~~~~~~~~G~I~f~nVsf~Y~~~~~~~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~ID 1105 (1198)
.++. ..+.++..|.|+|+||+|+|+++ +.++|+|+||+|++||++|||||||||||||+++|.|+|+|++|+|.+|
T Consensus 328 ~~~~---~~~~~~~~~~i~~~~v~~~y~~~-~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~ 403 (582)
T 3b5x_A 328 RDNG---KYEAERVNGEVDVKDVTFTYQGK-EKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLD 403 (582)
T ss_pred CCCC---CCCCCCCCCeEEEEEEEEEcCCC-CccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEEC
Confidence 3211 11122335789999999999743 2469999999999999999999999999999999999999999999999
Q ss_pred CcccCCCChHHHHhhcceeccccccccccHHHHHhcCCCCCCCHHHHHHHHHHcchHHHHHhcccccccee
Q 000984 1106 GVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQVRTSRL 1176 (1198)
Q Consensus 1106 G~dI~~i~l~~LR~~IsiV~Qdp~LF~gTIreNI~~g~~~~~tdeei~~Al~~A~l~dfI~~LP~g~dt~v 1176 (1198)
|+|+++++.+++|++|++|||||.+|++|++|||.+|..++.+++++++|++.++++++++++|+||||.+
T Consensus 404 g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~g~~t~~ 474 (582)
T 3b5x_A 404 GHDVRDYKLTNLRRHFALVSQNVHLFNDTIANNIAYAAEGEYTREQIEQAARQAHAMEFIENMPQGLDTVI 474 (582)
T ss_pred CEEhhhCCHHHHhcCeEEEcCCCccccccHHHHHhccCCCCCCHHHHHHHHHHCCCHHHHHhCcccccchh
Confidence 99999999999999999999999999999999999985236789999999999999999999999999976
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-57 Score=560.67 Aligned_cols=462 Identities=27% Similarity=0.410 Sum_probs=409.8
Q ss_pred hhHhhhhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhhhhHHH-HHHHHHHHHHHHHHHHHHHHH
Q 000984 706 PTRRLAYLNKPEIPVILAGTIAAMANGVILPIYGLLISSVIETFFKPPHELKKDSRFW-ALIYLALGAGSFLLSPAQSYF 784 (1198)
Q Consensus 706 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 784 (1198)
.+++++.+.+++++.+++++++.++.+++....+++++.+++....... . ....+ .++++++.++..++.+++.++
T Consensus 12 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (582)
T 3b60_A 12 TFRRLWPTIAPFKAGLIVAGIALILNAASDTFMLSLLKPLLDDGFGKTD--R-SVLLWMPLVVIGLMILRGITSYISSYC 88 (582)
T ss_dssp HHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHSSTTSTT--H-HHHHHSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc--h-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666667777777777888888888888888999999987643211 1 11222 233555667778888999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCcccccccCCCChhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 000984 785 FAVAGNKLIQRIRSMCFEKVIHMEVSWFDEPEHSSGAIGARLSADAASVRALVGDALARIVQNISTAAAGLIIAFTASWQ 864 (1198)
Q Consensus 785 ~~~~~~~~~~~Lr~~l~~~ll~~p~~fFd~~~~~~G~i~~r~s~D~~~i~~~l~~~l~~~i~~~~~~i~~li~~~~~~~~ 864 (1198)
....+.++..++|.++|+|++++|++||+ ++++|++++|+++|++.++..+...+..++..++.+++.++++++++|+
T Consensus 89 ~~~~~~~~~~~lr~~l~~~l~~~~~~~~~--~~~~g~l~~r~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~ 166 (582)
T 3b60_A 89 ISWVSGKVVMTMRRRLFGHMMGMPVAFFD--KQSTGTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQ 166 (582)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCCSTHHH--HSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCHHHHC--CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 99999999999999999999999999999 5889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhchhHHHHHhcchHHHHHHHHHHhhhHHHHhHHHHH
Q 000984 865 LALIILVMLPLIGVSGYTQMKFMKGFSADAKMKYEEASQVANDAVGSIRTVASFCAEEKVMQLYKKKCEAPMKTGIRQGM 944 (1198)
Q Consensus 865 l~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~ 944 (1198)
+++++++++|+++++..++.++.++..++.++..++..+.+.|+++|+++||+|+.|+.+.++|.+..++..+...+...
T Consensus 167 l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 246 (582)
T 3b60_A 167 LSIILVVLAPIVSIAIRVVSKRFRSISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNKMRLQGMKMVS 246 (582)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999888889999988999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhcCCC
Q 000984 945 VSGGGFGASFFLLFAFYAASFYAGARLVEDGKATFSDVFKVFFSLTMTAIGISQSSSFSSDSNKAKSAAASIFAIIDRES 1024 (1198)
Q Consensus 945 ~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~~t~g~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~~~~ 1024 (1198)
......++..++..+..++++++|++++..|.+++|.++++..+...+..|+..+......++++..+++|+.++++.++
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~~l~~~~ 326 (582)
T 3b60_A 247 ASSISDPIIQLIASLALAFVLYAASFPSVMDSLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDSEQ 326 (582)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSSSTTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 88888888888888888889999999999999999999999999999999999999999999999999999999998776
Q ss_pred CCCCCCCCCCcccCCcccEEEeeeeEECCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEE
Q 000984 1025 KIDPSDESGTILEDVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITL 1104 (1198)
Q Consensus 1025 ~~~~~~~~~~~~~~~~G~I~f~nVsf~Y~~~~~~~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~I 1104 (1198)
+.+.. ..+.++..|.|+|+||+|+|+++ +.++|+|+||+|++||++|||||||||||||+++|.|+|+|++|+|.+
T Consensus 327 ~~~~~---~~~~~~~~~~i~~~~v~~~y~~~-~~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~ 402 (582)
T 3b60_A 327 EKDEG---KRVIDRATGDLEFRNVTFTYPGR-EVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILM 402 (582)
T ss_dssp SCCCC---CBCCSCCCCCEEEEEEEECSSSS-SCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEE
T ss_pred CccCC---CCCCCCCCCcEEEEEEEEEcCCC-CCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccCCCCCeEEE
Confidence 53221 11122345789999999999742 246999999999999999999999999999999999999999999999
Q ss_pred CCcccCCCChHHHHhhcceeccccccccccHHHHHhcCCCCCCCHHHHHHHHHHcchHHHHHhcccccccee
Q 000984 1105 DGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQVRTSRL 1176 (1198)
Q Consensus 1105 DG~dI~~i~l~~LR~~IsiV~Qdp~LF~gTIreNI~~g~~~~~tdeei~~Al~~A~l~dfI~~LP~g~dt~v 1176 (1198)
||+|+++++.+++|++|++|||||.+|++|++|||.+|..++.+++++++|++.++++++++++|+|+||.+
T Consensus 403 ~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~g~~~~~ 474 (582)
T 3b60_A 403 DGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTII 474 (582)
T ss_dssp TTEETTTBCHHHHHHTEEEECSSCCCCSSBHHHHHHTTTTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBC
T ss_pred CCEEccccCHHHHHhhCeEEccCCcCCCCCHHHHHhccCCCCCCHHHHHHHHHHcCCHHHHHhccccccccc
Confidence 999999999999999999999999999999999999985236789999999999999999999999999986
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-59 Score=524.32 Aligned_cols=277 Identities=42% Similarity=0.654 Sum_probs=248.5
Q ss_pred HHHHHHHHHHHHHHHHHHccCCCCCccCCCCcccCCCcccEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCC
Q 000984 344 LSAFGAGQAAAFKMFETINRKPEIDAYDTKGKILDDIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGS 423 (1198)
Q Consensus 344 ~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~Gs 423 (1198)
...+..+.++++|+++.++.+++..... ...+.+...+.|+++||+|+|+. +.++|+|+||+|++||+++|||||||
T Consensus 15 ~~~~~~~~~~~~ri~~~l~~~~~~~~~~-~~~~~~~~~~~i~~~~vs~~y~~--~~~vL~~isl~i~~Ge~vaivG~sGs 91 (306)
T 3nh6_A 15 VPRGSHMFIDMENMFDLLKEETEVKDLP-GAGPLRFQKGRIEFENVHFSYAD--GRETLQDVSFTVMPGQTLALVGPSGA 91 (306)
T ss_dssp ----CCTTCCHHHHHHHHHHHHSCCCCT-TCBCCCCSSCCEEEEEEEEESST--TCEEEEEEEEEECTTCEEEEESSSCH
T ss_pred chhHHHHHHHHHHHHHHHhCCccccccc-cccccCCCCCeEEEEEEEEEcCC--CCceeeeeeEEEcCCCEEEEECCCCc
Confidence 3445556677889998887655432211 11122233578999999999964 35799999999999999999999999
Q ss_pred cHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcceEEEcCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHH
Q 000984 424 GKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAK 503 (1198)
Q Consensus 424 GKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~ 503 (1198)
|||||+++|+|+++|++|+|.+||.|+.+++.+++|++|+||||+|++|++||+|||.++.+..++++++++++.+++.+
T Consensus 92 GKSTLl~ll~gl~~p~~G~I~i~G~~i~~~~~~~~r~~i~~v~Q~~~lf~~Tv~eNi~~~~~~~~~~~~~~~~~~~~l~~ 171 (306)
T 3nh6_A 92 GKSTILRLLFRFYDISSGCIRIDGQDISQVTQASLRSHIGVVPQDTVLFNDTIADNIRYGRVTAGNDEVEAAAQAAGIHD 171 (306)
T ss_dssp HHHHHHHHHTTSSCCSEEEEEETTEETTSBCHHHHHHTEEEECSSCCCCSEEHHHHHHTTSTTCCHHHHHHHHHHHTCHH
T ss_pred hHHHHHHHHHcCCCCCCcEEEECCEEcccCCHHHHhcceEEEecCCccCcccHHHHHHhhcccCCHHHHHHHHHHhCcHH
Confidence 99999999999999999999999999999999999999999999999999999999999988888999999999999999
Q ss_pred HHHhCCCCccchhcCCCCCCChHHHHHHhHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhCCCeEEEEecCcch
Q 000984 504 FIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLST 583 (1198)
Q Consensus 504 ~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~ 583 (1198)
++..+|+|++|.+|++|.+||||||||++|||||+++|+|||||||||+||+.+++.|++.|+++.+++|+|+||||+++
T Consensus 172 ~i~~lp~gl~t~~~~~g~~LSGGqrQRvaiARAL~~~p~iLlLDEPts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~ 251 (306)
T 3nh6_A 172 AIMAFPEGYRTQVGERGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVCANRTTIVVAHRLST 251 (306)
T ss_dssp HHHHSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSSCCCHHHHHHHHHHHHHHHTTSEEEEECCSHHH
T ss_pred HHHhccchhhhHhcCCcCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEEcChHH
Confidence 99999999999999999999999999999999999999999999999999999999999999998889999999999999
Q ss_pred hhccCEEEEEeCCEEEEecChhhHhcCCCchhHHHHHHHhh
Q 000984 584 VRNADMIAVIHRGKIVEKGTHSKLVEDPEGAYSQLIRLQEA 624 (1198)
Q Consensus 584 ~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~~~ 624 (1198)
+..||+|++|++|+|++.|+|+++++. ++.|+++++.+..
T Consensus 252 ~~~aD~i~vl~~G~iv~~G~~~el~~~-~~~y~~l~~~q~~ 291 (306)
T 3nh6_A 252 VVNADQILVIKDGCIVERGRHEALLSR-GGVYADMWQLQQG 291 (306)
T ss_dssp HHTCSEEEEEETTEEEEEECHHHHHHH-TSHHHHHHHHHHC
T ss_pred HHcCCEEEEEECCEEEEECCHHHHHhc-ChHHHHHHHHHHh
Confidence 999999999999999999999999986 7899999887653
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-50 Score=441.01 Aligned_cols=239 Identities=48% Similarity=0.794 Sum_probs=222.0
Q ss_pred ccEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcc
Q 000984 382 GDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKK 461 (1198)
Q Consensus 382 g~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~ 461 (1198)
..|+++|++++|+.. ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.+...+|++
T Consensus 6 ~~~~~~~l~~~y~~~-~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~i~g~~~~~~~~~~~~~~ 84 (247)
T 2ff7_A 6 HDITFRNIRFRYKPD-SPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQ 84 (247)
T ss_dssp EEEEEEEEEEESSTT-SCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHH
T ss_pred CceeEEEEEEEeCCC-CcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhc
Confidence 469999999999421 2469999999999999999999999999999999999999999999999999998888888999
Q ss_pred eEEEcCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhhccCC
Q 000984 462 IGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDP 541 (1198)
Q Consensus 462 i~~v~Q~~~l~~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal~~~~ 541 (1198)
|+||||+|.+|.+||+||+.++.+..++++++++++.+++.+++..+|.|+++.+++++.+||||||||++|||||+++|
T Consensus 85 i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qRv~iAraL~~~p 164 (247)
T 2ff7_A 85 VGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNP 164 (247)
T ss_dssp EEEECSSCCCTTSBHHHHHTTTCTTCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCCHHHHHHHHHHHHHTTCC
T ss_pred EEEEeCCCccccccHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcchhhhhhhCCCCCCCHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999976556778889999999999999999999999999999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHhHHHHHHHHHHHhCCCeEEEEecCcchhhccCEEEEEeCCEEEEecChhhHhcCCCchhHHHHHH
Q 000984 542 RILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVEDPEGAYSQLIRL 621 (1198)
Q Consensus 542 ~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~ 621 (1198)
++||||||||+||+.+.+.+.+.|+++.+++|+|+|||+++.+..||+|++|++|++++.|+++++.+.+.+.|.+++..
T Consensus 165 ~lllLDEPts~LD~~~~~~i~~~l~~~~~g~tviivtH~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~~~~~~~~l~~~ 244 (247)
T 2ff7_A 165 KILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQL 244 (247)
T ss_dssp SEEEECCCCSCCCHHHHHHHHHHHHHHHTTSEEEEECSSGGGGTTSSEEEEEETTEEEEEECHHHHHTSTTCHHHHHHHH
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHhCCEEEEEECCEEEEECCHHHHHhCCchHHHHHHHh
Confidence 99999999999999999999999998877899999999999988899999999999999999999987656778777653
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-49 Score=438.37 Aligned_cols=239 Identities=49% Similarity=0.789 Sum_probs=219.8
Q ss_pred ccEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcc
Q 000984 382 GDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKK 461 (1198)
Q Consensus 382 g~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~ 461 (1198)
+.|+++|++|+|+....+++|+|+||+|++||+++|+||||||||||+++|+|+++| +|+|.++|.++.+.+...+|++
T Consensus 16 ~~l~i~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-~G~I~i~g~~i~~~~~~~~~~~ 94 (260)
T 2ghi_A 16 VNIEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDA-EGDIKIGGKNVNKYNRNSIRSI 94 (260)
T ss_dssp CCEEEEEEEECCTTCCSSCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC-EEEEEETTEEGGGBCHHHHHTT
T ss_pred CeEEEEEEEEEeCCCCcCceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCCC-CeEEEECCEEhhhcCHHHHhcc
Confidence 469999999999753224699999999999999999999999999999999999987 8999999999988888888999
Q ss_pred eEEEcCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhhccCC
Q 000984 462 IGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDP 541 (1198)
Q Consensus 462 i~~v~Q~~~l~~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal~~~~ 541 (1198)
|+||||+|.+|+.||+||+.++.....++++.++++.+++.+++..+|+|+++.+++.+.+||||||||++|||||+++|
T Consensus 95 i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p 174 (260)
T 2ghi_A 95 IGIVPQDTILFNETIKYNILYGKLDATDEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDP 174 (260)
T ss_dssp EEEECSSCCCCSEEHHHHHHTTCTTCCHHHHHHHHHHTTCHHHHHTSTTGGGCEESSSSBCCCHHHHHHHHHHHHHHHCC
T ss_pred EEEEcCCCcccccCHHHHHhccCCCCCHHHHHHHHHHhCCHHHHHhccccccccccCCcCcCCHHHHHHHHHHHHHHcCC
Confidence 99999999999999999999976555677888889999999999999999999999999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHhHHHHHHHHHHHhCCCeEEEEecCcchhhccCEEEEEeCCEEEEecChhhHhcCCCchhHHHHHH
Q 000984 542 RILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVEDPEGAYSQLIRL 621 (1198)
Q Consensus 542 ~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~ 621 (1198)
++||||||||+||+.+.+.+.+.|+++.+++|+|+|||+++.+..||+|++|++|++++.|+++++.+. .+.|.+++..
T Consensus 175 ~lllLDEPts~LD~~~~~~i~~~l~~l~~~~tviivtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~-~~~~~~~~~~ 253 (260)
T 2ghi_A 175 KIVIFDEATSSLDSKTEYLFQKAVEDLRKNRTLIIIAHRLSTISSAESIILLNKGKIVEKGTHKDLLKL-NGEYAEMWNM 253 (260)
T ss_dssp SEEEEECCCCTTCHHHHHHHHHHHHHHTTTSEEEEECSSGGGSTTCSEEEEEETTEEEEEECHHHHHHH-TSHHHHHHHH
T ss_pred CEEEEECccccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHhCCEEEEEECCEEEEECCHHHHHhc-ChHHHHHHHh
Confidence 999999999999999999999999988778999999999999888999999999999999999999875 5677777654
Q ss_pred H
Q 000984 622 Q 622 (1198)
Q Consensus 622 ~ 622 (1198)
+
T Consensus 254 ~ 254 (260)
T 2ghi_A 254 Q 254 (260)
T ss_dssp H
T ss_pred h
Confidence 4
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.9e-49 Score=435.61 Aligned_cols=239 Identities=42% Similarity=0.732 Sum_probs=216.9
Q ss_pred cccEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhc
Q 000984 381 RGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRK 460 (1198)
Q Consensus 381 ~g~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~ 460 (1198)
.+.|+++|++++|+...+.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.+...+|+
T Consensus 14 ~~~l~~~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~ 93 (271)
T 2ixe_A 14 KGLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHHYLHT 93 (271)
T ss_dssp CCCEEEEEEEECCTTCTTSCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHHHH
T ss_pred CceEEEEEEEEEeCCCCCceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEcccCCHHHHhc
Confidence 35699999999996422256999999999999999999999999999999999999999999999999998888888889
Q ss_pred ceEEEcCCCCCCcccHHHHHhcCCCCCCH-HHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhhcc
Q 000984 461 KIGLVSQEPVLFTGSIKDNIAYGKDDATT-EEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILK 539 (1198)
Q Consensus 461 ~i~~v~Q~~~l~~~ti~~Ni~~~~~~~~~-~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal~~ 539 (1198)
+|+||||+|.+|..||+|||.++.+.... +++.++++..++.+.++.+|+|+++.+++.+.+||||||||++|||||++
T Consensus 94 ~i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgGq~QRv~lAraL~~ 173 (271)
T 2ixe_A 94 QVAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIR 173 (271)
T ss_dssp HEEEECSSCCCCSSBHHHHHHTTCSSCCCHHHHHHHHHHHTCHHHHHHSTTGGGSBCCGGGTTSCHHHHHHHHHHHHHTT
T ss_pred cEEEEecCCccccccHHHHHhhhcccCChHHHHHHHHHHHhHHHHHHhhhcchhhhhcCCcCCCCHHHHHHHHHHHHHhc
Confidence 99999999999999999999997654443 56677777788889999999999999999999999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHhHHHHHHHHHHHhC--CCeEEEEecCcchhhccCEEEEEeCCEEEEecChhhHhcCCCchhHH
Q 000984 540 DPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVEDPEGAYSQ 617 (1198)
Q Consensus 540 ~~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~ 617 (1198)
+|++||||||||+||+.+.+.+.+.|+++.+ ++|+|+|||+++.+..||+|++|++|++++.|+++++... .+.|.+
T Consensus 174 ~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~tviivtHd~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~-~~~~~~ 252 (271)
T 2ixe_A 174 KPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLSLAERAHHILFLKEGSVCEQGTHLQLMER-GGCYRS 252 (271)
T ss_dssp CCSEEEEESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEEECSCHHHHTTCSEEEEEETTEEEEEECHHHHHHH-TSHHHH
T ss_pred CCCEEEEECCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHhCCEEEEEECCEEEEECCHHHHHhC-cHHHHH
Confidence 9999999999999999999999999998754 7899999999999888999999999999999999999875 467777
Q ss_pred HHH
Q 000984 618 LIR 620 (1198)
Q Consensus 618 ~~~ 620 (1198)
++.
T Consensus 253 ~~~ 255 (271)
T 2ixe_A 253 MVE 255 (271)
T ss_dssp HHH
T ss_pred HHH
Confidence 664
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-49 Score=433.96 Aligned_cols=234 Identities=45% Similarity=0.774 Sum_probs=215.0
Q ss_pred EEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcceE
Q 000984 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIG 463 (1198)
Q Consensus 384 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~ 463 (1198)
|+++|++|+|+. ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.+...+|++|+
T Consensus 2 l~~~~l~~~y~~--~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (243)
T 1mv5_A 2 LSARHVDFAYDD--SEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIG 79 (243)
T ss_dssp EEEEEEEECSSS--SSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCC
T ss_pred EEEEEEEEEeCC--CCceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhhEE
Confidence 789999999952 356999999999999999999999999999999999999999999999999998887777888999
Q ss_pred EEcCCCCCCcccHHHHHhcC-CCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhhccCCC
Q 000984 464 LVSQEPVLFTGSIKDNIAYG-KDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPR 542 (1198)
Q Consensus 464 ~v~Q~~~l~~~ti~~Ni~~~-~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal~~~~~ 542 (1198)
||||+|.+|.+|++|||.++ .+..++++++++++.+++.+.+..+|.|+++.+++.+.+||||||||++|||||+++|+
T Consensus 80 ~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qrv~lAral~~~p~ 159 (243)
T 1mv5_A 80 FVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPK 159 (243)
T ss_dssp EECCSSCCCCEEHHHHTTSCTTSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCS
T ss_pred EEcCCCccccccHHHHHhhhccCCCCHHHHHHHHHHhChHHHHHhCccchhchhccCcCcCCHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999987 44566788899999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHhHHHHHHHHHHHhCCCeEEEEecCcchhhccCEEEEEeCCEEEEecChhhHhcCCCchhHHHHH
Q 000984 543 ILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVEDPEGAYSQLIR 620 (1198)
Q Consensus 543 illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~ 620 (1198)
+||||||||+||+.+.+.+.+.|+++.+++|+|++||+++.+..||+|++|++|++++.|+++++.+. ...|..++.
T Consensus 160 lllLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~-~~~~~~~~~ 236 (243)
T 1mv5_A 160 ILMLDEATASLDSESESMVQKALDSLMKGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVAT-HPLYAKYVS 236 (243)
T ss_dssp EEEEECCSCSSCSSSCCHHHHHHHHHHTTSEEEEECCSHHHHHHCSEEEEEETTEECCCSCHHHHHHH-CHHHHHHHH
T ss_pred EEEEECCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCChHHHHhCCEEEEEECCEEEEeCCHHHHHhc-cHHHHHHHH
Confidence 99999999999999999999999887778999999999998888999999999999999999999764 345555543
|
| >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-47 Score=442.85 Aligned_cols=237 Identities=27% Similarity=0.483 Sum_probs=219.4
Q ss_pred CCCcccEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHH
Q 000984 378 DDIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQW 457 (1198)
Q Consensus 378 ~~~~g~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~ 457 (1198)
++..+.|+++|++++|+.. +.++|+|+||+|++||+++|+||||||||||+++|+|+++ ++|+|.+||.++.+++.+.
T Consensus 14 ~~~~~~i~~~~l~~~y~~~-~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~-~~G~I~i~G~~i~~~~~~~ 91 (390)
T 3gd7_A 14 WPSGGQMTVKDLTAKYTEG-GNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGEIQIDGVSWDSITLEQ 91 (390)
T ss_dssp SSSSCCEEEEEEEEESSSS-SCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSE-EEEEEEESSCBTTSSCHHH
T ss_pred CCCCCeEEEEEEEEEecCC-CeEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCC-CCeEEEECCEECCcCChHH
Confidence 3345679999999999632 3579999999999999999999999999999999999998 8999999999999999999
Q ss_pred HhcceEEEcCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhh
Q 000984 458 IRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAI 537 (1198)
Q Consensus 458 ~r~~i~~v~Q~~~l~~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal 537 (1198)
+|++|+||+|++.+|..||+||+.+.. ...+++++++++.+++.+.+.+.|.++++.++++|.+||||||||++|||||
T Consensus 92 ~rr~ig~v~Q~~~lf~~tv~enl~~~~-~~~~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~g~~LSGGqrQRvalARAL 170 (390)
T 3gd7_A 92 WRKAFGVIPQKVFIFSGTFRKNLDPNA-AHSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSV 170 (390)
T ss_dssp HHHTEEEESCCCCCCSEEHHHHHCTTC-CSCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTTTTSCHHHHHHHHHHHHH
T ss_pred HhCCEEEEcCCcccCccCHHHHhhhcc-ccCHHHHHHHHHHhCCHHHHhhcccccccccccccccCCHHHHHHHHHHHHH
Confidence 999999999999999999999998543 3567889999999999999999999999999999999999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhCCCeEEEEecCcchhhccCEEEEEeCCEEEEecChhhHhcCCCchhHH
Q 000984 538 LKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVEDPEGAYSQ 617 (1198)
Q Consensus 538 ~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~ 617 (1198)
+++|++||||||||+||+.+...+++.|++..+++|+|+|||+++.+..||||++|++|+|++.|+++++.+++...|..
T Consensus 171 ~~~P~lLLLDEPts~LD~~~~~~l~~~l~~~~~~~tvi~vtHd~e~~~~aDri~vl~~G~i~~~g~~~el~~~p~~~~va 250 (390)
T 3gd7_A 171 LSKAKILLLDEPSAHLDPVTYQIIRRTLKQAFADCTVILCEARIEAMLECDQFLVIEENKVRQYDSILELYHYPADRFVA 250 (390)
T ss_dssp HTTCCEEEEESHHHHSCHHHHHHHHHHHHTTTTTSCEEEECSSSGGGTTCSEEEEEETTEEEEESSHHHHHHCCSBHHHH
T ss_pred hcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhCCCEEEEEEcCHHHHHhCCEEEEEECCEEEEECCHHHHHhCCCchHHH
Confidence 99999999999999999999999999998877789999999999988889999999999999999999999876665543
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-46 Score=404.56 Aligned_cols=214 Identities=28% Similarity=0.482 Sum_probs=194.7
Q ss_pred ccEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcc
Q 000984 382 GDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKK 461 (1198)
Q Consensus 382 g~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~ 461 (1198)
+.|+++|++++|+.. ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++| +
T Consensus 5 ~~l~~~~l~~~y~~~-~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g-------------~ 70 (229)
T 2pze_A 5 TEVVMENVTAFWEEG-GTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG-------------R 70 (229)
T ss_dssp EEEEEEEEEECSSTT-SCCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEECS-------------C
T ss_pred ceEEEEEEEEEeCCC-CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCccEEEECC-------------E
Confidence 469999999999632 35799999999999999999999999999999999999999999999998 6
Q ss_pred eEEEcCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhhccCC
Q 000984 462 IGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDP 541 (1198)
Q Consensus 462 i~~v~Q~~~l~~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal~~~~ 541 (1198)
|+|+||+|++|.+|++||+.++.. ....+..++++.+++.+.+..+|.++++.+++++.+||||||||++|||||+++|
T Consensus 71 i~~v~q~~~~~~~tv~enl~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqrv~lAral~~~p 149 (229)
T 2pze_A 71 ISFCSQFSWIMPGTIKENIIFGVS-YDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDA 149 (229)
T ss_dssp EEEECSSCCCCSBCHHHHHHTTSC-CCHHHHHHHHHHTTCHHHHTTSTTGGGSCBCTTCTTSCHHHHHHHHHHHHHHSCC
T ss_pred EEEEecCCcccCCCHHHHhhccCC-cChHHHHHHHHHhCcHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHhcCC
Confidence 999999999999999999998753 3445566677778888899999999999999999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHhHHHHHHH-HHHHhCCCeEEEEecCcchhhccCEEEEEeCCEEEEecChhhHhcC
Q 000984 542 RILLLDEATSALDAESEKVVQEA-LDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVED 610 (1198)
Q Consensus 542 ~illlDe~ts~lD~~~~~~i~~~-i~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~ 610 (1198)
++||||||||+||+.+.+.+.+. +++..+++|+|++||+++.+..||+|++|++|++++.|+++++.+.
T Consensus 150 ~lllLDEPts~LD~~~~~~i~~~l~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 219 (229)
T 2pze_A 150 DLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQNL 219 (229)
T ss_dssp SEEEEESTTTTSCHHHHHHHHHHCCCCCTTTSEEEEECCCHHHHHHCSEEEEEETTEEEEEECHHHHHTC
T ss_pred CEEEEECcccCCCHHHHHHHHHHHHHHhhCCCEEEEEcCChHHHHhCCEEEEEECCEEEEECCHHHHHhc
Confidence 99999999999999999999886 4555567999999999998888999999999999999999999765
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-46 Score=407.29 Aligned_cols=223 Identities=32% Similarity=0.546 Sum_probs=199.3
Q ss_pred cEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcce
Q 000984 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKI 462 (1198)
Q Consensus 383 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i 462 (1198)
.|+++|++++|+.. ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++| ++
T Consensus 3 ~l~~~~l~~~y~~~-~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g-------------~i 68 (237)
T 2cbz_A 3 SITVRNATFTWARS-DPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKG-------------SV 68 (237)
T ss_dssp CEEEEEEEEESCTT-SCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSEEEEEEEEECS-------------CE
T ss_pred eEEEEEEEEEeCCC-CCceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECC-------------EE
Confidence 38999999999632 35699999999999999999999999999999999999999999999999 59
Q ss_pred EEEcCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhhccCCC
Q 000984 463 GLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPR 542 (1198)
Q Consensus 463 ~~v~Q~~~l~~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal~~~~~ 542 (1198)
+||||+|++++.|++|||.++.. ...++..++.+.+++.+.+..+|.|+++.+++.+.+||||||||++|||||+++|+
T Consensus 69 ~~v~Q~~~~~~~tv~enl~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~ 147 (237)
T 2cbz_A 69 AYVPQQAWIQNDSLRENILFGCQ-LEEPYYRSVIQACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNAD 147 (237)
T ss_dssp EEECSSCCCCSEEHHHHHHTTSC-CCTTHHHHHHHHTTCHHHHTTSTTGGGSEESTTSBCCCHHHHHHHHHHHHHHHCCS
T ss_pred EEEcCCCcCCCcCHHHHhhCccc-cCHHHHHHHHHHHhhHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999998754 23445566777777778888899999999999999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHhHHHHHHHHH---HHhCCCeEEEEecCcchhhccCEEEEEeCCEEEEecChhhHhcCCCchhHHHH
Q 000984 543 ILLLDEATSALDAESEKVVQEALD---RIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVEDPEGAYSQLI 619 (1198)
Q Consensus 543 illlDe~ts~lD~~~~~~i~~~i~---~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~ 619 (1198)
+||||||||+||+.+.+.+.+.+. +..+++|+|++||+++.+..||+|++|++|++++.|+++++.+. .+.|..++
T Consensus 148 lllLDEPts~LD~~~~~~i~~~l~~~~~~~~~~tviivtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~-~~~~~~~~ 226 (237)
T 2cbz_A 148 IYLFDDPLSAVDAHVGKHIFENVIGPKGMLKNKTRILVTHSMSYLPQVDVIIVMSGGKISEMGSYQELLAR-DGAFAEFL 226 (237)
T ss_dssp EEEEESTTTTSCHHHHHHHHHHTTSTTSTTTTSEEEEECSCSTTGGGSSEEEEEETTEEEEEECHHHHHHH-TSHHHHHH
T ss_pred EEEEeCcccccCHHHHHHHHHHHHHHHhhcCCCEEEEEecChHHHHhCCEEEEEeCCEEEEeCCHHHHhhc-cHHHHHHH
Confidence 999999999999999999998884 34458999999999999888999999999999999999999875 56676666
Q ss_pred HH
Q 000984 620 RL 621 (1198)
Q Consensus 620 ~~ 621 (1198)
..
T Consensus 227 ~~ 228 (237)
T 2cbz_A 227 RT 228 (237)
T ss_dssp HH
T ss_pred HH
Confidence 53
|
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C | Back alignment and structure |
|---|
Probab=100.00 E-value=7.7e-45 Score=412.88 Aligned_cols=229 Identities=30% Similarity=0.506 Sum_probs=192.2
Q ss_pred ccEEEEeEEEEcCCCC-CCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHH---
Q 000984 382 GDIELRDVYFSYPARP-NEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQW--- 457 (1198)
Q Consensus 382 g~i~~~~v~~~y~~~~-~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~--- 457 (1198)
..|+++|++++|+... ..++|+||||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+..+
T Consensus 23 ~mi~v~~ls~~y~~~~~~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~G~~i~~~~~~~~~~ 102 (366)
T 3tui_C 23 HMIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTK 102 (366)
T ss_dssp CCEEEEEEEEEEECSSSEEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECSSCCHHHHHH
T ss_pred ceEEEEeEEEEeCCCCCCeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHH
Confidence 4699999999996432 246899999999999999999999999999999999999999999999999999888655
Q ss_pred HhcceEEEcCCCCCCc-ccHHHHHhcCCC--CCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHH
Q 000984 458 IRKKIGLVSQEPVLFT-GSIKDNIAYGKD--DATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIA 534 (1198)
Q Consensus 458 ~r~~i~~v~Q~~~l~~-~ti~~Ni~~~~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lA 534 (1198)
+|++||||+|+|.+|. .||+||+.++.. ..+.++..+.. .+.++.+ |+.........+||||||||++||
T Consensus 103 ~r~~Ig~v~Q~~~l~~~~TV~env~~~~~~~~~~~~~~~~~v-----~~lL~~v--gL~~~~~~~~~~LSGGqkQRVaIA 175 (366)
T 3tui_C 103 ARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRV-----TELLSLV--GLGDKHDSYPSNLSGGQKQRVAIA 175 (366)
T ss_dssp HHTTEEEECSSCCCCTTSCHHHHHHHHHHHSCCCHHHHHHHH-----HHHHHHH--TCGGGTTCCTTTSCHHHHHHHHHH
T ss_pred HhCcEEEEeCCCccCCCCCHHHHHHHHHHhcCCCHHHHHHHH-----HHHHHHc--CCchHhcCChhhCCHHHHHHHHHH
Confidence 4788999999999886 599999998531 12232222111 1112222 555566777889999999999999
Q ss_pred HhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhC--CCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChhhHhcCC
Q 000984 535 RAILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVEDP 611 (1198)
Q Consensus 535 Ral~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~ 611 (1198)
|||+.+|++||||||||+||+.+.+.+.+.|+++.+ ++|+|+|||+++.+.. ||||++|++|+|++.|+++++..++
T Consensus 176 rAL~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~vTHdl~~~~~~aDrv~vl~~G~iv~~g~~~ev~~~p 255 (366)
T 3tui_C 176 RALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVFSHP 255 (366)
T ss_dssp HHTTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHCSEEEEEETTEEEECCBHHHHHSSC
T ss_pred HHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCC
Confidence 999999999999999999999999999999988743 7999999999999875 9999999999999999999999876
Q ss_pred CchhHH
Q 000984 612 EGAYSQ 617 (1198)
Q Consensus 612 ~~~~~~ 617 (1198)
...+.+
T Consensus 256 ~~~~~~ 261 (366)
T 3tui_C 256 KTPLAQ 261 (366)
T ss_dssp CSHHHH
T ss_pred CcHHHH
Confidence 655543
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-44 Score=401.33 Aligned_cols=219 Identities=26% Similarity=0.510 Sum_probs=186.1
Q ss_pred cEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecC--CcCHHHHhc
Q 000984 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLK--EFQLQWIRK 460 (1198)
Q Consensus 383 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~--~~~~~~~r~ 460 (1198)
.|+++|++++|+.. .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++. +.+...+|+
T Consensus 7 ~l~i~~ls~~y~~~--~~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~ 84 (275)
T 3gfo_A 7 ILKVEELNYNYSDG--THALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIMKLRE 84 (275)
T ss_dssp EEEEEEEEEECTTS--CEEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCCSHHHHHHHHH
T ss_pred EEEEEEEEEEECCC--CeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeEEEECCEECCcccccHHHHhC
Confidence 58999999999642 45999999999999999999999999999999999999999999999999984 344567889
Q ss_pred ceEEEcCCC--CCCcccHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHh
Q 000984 461 KIGLVSQEP--VLFTGSIKDNIAYGKDD--ATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARA 536 (1198)
Q Consensus 461 ~i~~v~Q~~--~l~~~ti~~Ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARa 536 (1198)
+||||||+| .+|..||+||+.|+... .+.++..+.+ .+.++.+ |++........+||||||||++||||
T Consensus 85 ~ig~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~-----~~~l~~~--~L~~~~~~~~~~LSgGqkQRv~iAra 157 (275)
T 3gfo_A 85 SIGIVFQDPDNQLFSASVYQDVSFGAVNMKLPEDEIRKRV-----DNALKRT--GIEHLKDKPTHCLSFGQKKRVAIAGV 157 (275)
T ss_dssp SEEEECSSGGGTCCSSBHHHHHHHHHHTSCCCHHHHHHHH-----HHHHHHT--TCGGGTTSBGGGSCHHHHHHHHHHHH
T ss_pred cEEEEEcCcccccccCcHHHHHHHHHHHcCCCHHHHHHHH-----HHHHHHc--CCchhhcCCcccCCHHHHHHHHHHHH
Confidence 999999998 57889999999986321 2333322221 1223333 55556667778999999999999999
Q ss_pred hccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh--CCCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChhhHhcC
Q 000984 537 ILKDPRILLLDEATSALDAESEKVVQEALDRIM--VNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVED 610 (1198)
Q Consensus 537 l~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~--~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 610 (1198)
|+.+|++||||||||+||+.+.+.+.+.++++. +++|+|+|||+++.+.. ||+|++|++|++++.|+++++..+
T Consensus 158 L~~~P~lLlLDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHdl~~~~~~~drv~~l~~G~i~~~g~~~~~~~~ 234 (275)
T 3gfo_A 158 LVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFAE 234 (275)
T ss_dssp HTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHCCEEEEEESCCSSGGGGCSEEEEEETTEEEEEECHHHHTHH
T ss_pred HHcCCCEEEEECccccCCHHHHHHHHHHHHHHHhhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHhcC
Confidence 999999999999999999999999999998875 38999999999999865 999999999999999999998764
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.9e-45 Score=395.99 Aligned_cols=217 Identities=28% Similarity=0.437 Sum_probs=179.6
Q ss_pred EEEEeEEEEcCCCC-CCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHH----
Q 000984 384 IELRDVYFSYPARP-NEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWI---- 458 (1198)
Q Consensus 384 i~~~~v~~~y~~~~-~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~---- 458 (1198)
|+++|++++|+... ..++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.+...+
T Consensus 2 l~~~~l~~~y~~~~~~~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~ 81 (235)
T 3tif_A 2 VKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIR 81 (235)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHH
T ss_pred EEEEEEEEEeCCCCcceeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHh
Confidence 78999999996432 2469999999999999999999999999999999999999999999999999999887654
Q ss_pred hcceEEEcCCCCCCcc-cHHHHHhcCC-----CCCCHHH-HHHHHHHhcHHHHHHhCCCCccch-hcCCCCCCChHHHHH
Q 000984 459 RKKIGLVSQEPVLFTG-SIKDNIAYGK-----DDATTEE-IRVATELANAAKFIDKLPQGIDTL-VGEHGTQLSGGQKQR 530 (1198)
Q Consensus 459 r~~i~~v~Q~~~l~~~-ti~~Ni~~~~-----~~~~~~~-~~~~~~~~~~~~~i~~l~~g~~t~-v~~~g~~lSgGqkqr 530 (1198)
|++|+||+|+|.+|.. ||+||+.++. .....++ ..++. +.+..+ |+... ......+||||||||
T Consensus 82 ~~~i~~v~Q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~------~~l~~~--~l~~~~~~~~~~~LSgGq~QR 153 (235)
T 3tif_A 82 RDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRAL------ECLKMA--ELEERFANHKPNQLSGGQQQR 153 (235)
T ss_dssp HHHEEEECTTCCCCTTSCHHHHHHHHHHTCSSSCCCHHHHHHHHH------HHHHHT--TCCGGGTTCCGGGSCHHHHHH
T ss_pred hccEEEEecCCccCCCCcHHHHHHHHHHhhhccCCCHHHHHHHHH------HHHHHC--CCChhhhhCChhhCCHHHHHH
Confidence 4569999999999875 9999998742 1122222 22222 122222 44433 366778899999999
Q ss_pred HhHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhC--CCeEEEEecCcchhhccCEEEEEeCCEEEEecChhhHh
Q 000984 531 IAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLV 608 (1198)
Q Consensus 531 i~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~ 608 (1198)
++|||||+++|++||||||||+||+.+...+.+.++++.+ ++|+|+|||+++....||+|++|++|++++.++.+++.
T Consensus 154 v~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 233 (235)
T 3tif_A 154 VAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVEREEKLRGFD 233 (235)
T ss_dssp HHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHHTTSSEEEEEETTEEEEEEECC---
T ss_pred HHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEcCCHHHHHhCCEEEEEECCEEEEEcChhhhc
Confidence 9999999999999999999999999999999999988753 89999999999977779999999999999999877653
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=5.6e-44 Score=389.88 Aligned_cols=219 Identities=25% Similarity=0.436 Sum_probs=186.5
Q ss_pred cEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHH-hcc
Q 000984 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWI-RKK 461 (1198)
Q Consensus 383 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~-r~~ 461 (1198)
.|+++|++++|+. .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.+...+ |++
T Consensus 6 ~l~~~~l~~~y~~---~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 82 (240)
T 1ji0_A 6 VLEVQSLHVYYGA---IHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMG 82 (240)
T ss_dssp EEEEEEEEEEETT---EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHTT
T ss_pred eEEEEeEEEEECC---eeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCHHHHHhCC
Confidence 4899999999963 469999999999999999999999999999999999999999999999999988776655 456
Q ss_pred eEEEcCCCCCCcc-cHHHHHhcCC-CCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhhcc
Q 000984 462 IGLVSQEPVLFTG-SIKDNIAYGK-DDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILK 539 (1198)
Q Consensus 462 i~~v~Q~~~l~~~-ti~~Ni~~~~-~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal~~ 539 (1198)
++|+||+|.+|.+ |++||+.++. +....++..+.+ .+.++.++ |++...++...+||||||||++|||||++
T Consensus 83 i~~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~-----~~~l~~~~-~l~~~~~~~~~~LSgGq~qrv~lAraL~~ 156 (240)
T 1ji0_A 83 IALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDL-----EWIFSLFP-RLKERLKQLGGTLSGGEQQMLAIGRALMS 156 (240)
T ss_dssp EEEECSSCCCCTTSBHHHHHHGGGTTCCCSSHHHHHH-----HHHHHHCH-HHHTTTTSBSSSSCHHHHHHHHHHHHHTT
T ss_pred EEEEecCCccCCCCcHHHHHHHhhhcCCCHHHHHHHH-----HHHHHHcc-cHhhHhcCChhhCCHHHHHHHHHHHHHHc
Confidence 9999999999876 9999999864 211222222211 23344443 45666777888999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHhHHHHHHHHHHHh-CCCeEEEEecCcchhh-ccCEEEEEeCCEEEEecChhhHhcC
Q 000984 540 DPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKGTHSKLVED 610 (1198)
Q Consensus 540 ~~~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~~ 610 (1198)
+|++||||||||+||+.+.+.+.+.|+++. +++|+|++||+++.+. .||+|++|++|++++.|+++++.+.
T Consensus 157 ~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 229 (240)
T 1ji0_A 157 RPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNALGALKVAHYGYVLETGQIVLEGKASELLDN 229 (240)
T ss_dssp CCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEEEHHHHHTC
T ss_pred CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEEcCHHHHhcC
Confidence 999999999999999999999999998875 5799999999998775 5999999999999999999998753
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-43 Score=401.87 Aligned_cols=220 Identities=31% Similarity=0.541 Sum_probs=185.4
Q ss_pred cEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCC--cCHHHHhc
Q 000984 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKE--FQLQWIRK 460 (1198)
Q Consensus 383 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~--~~~~~~r~ 460 (1198)
.|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+ ......++
T Consensus 4 ~l~i~~ls~~y~~---~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~i~~~~~~~~~~~r 80 (359)
T 3fvq_A 4 ALHIGHLSKSFQN---TPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVRER 80 (359)
T ss_dssp CEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEEETTEEEESSSCBCCGGGS
T ss_pred EEEEEeEEEEECC---EEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEECcccccccchhhC
Confidence 4899999999953 569999999999999999999999999999999999999999999999999832 22334467
Q ss_pred ceEEEcCCCCCCc-ccHHHHHhcCCCCC---CH---HHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhH
Q 000984 461 KIGLVSQEPVLFT-GSIKDNIAYGKDDA---TT---EEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAI 533 (1198)
Q Consensus 461 ~i~~v~Q~~~l~~-~ti~~Ni~~~~~~~---~~---~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~l 533 (1198)
+||||+|++.+|. .||+|||.|+.... .. +++.++++.+ |++........+||||||||++|
T Consensus 81 ~ig~vfQ~~~l~p~ltV~eni~~~l~~~~~~~~~~~~~v~~~l~~~-----------gL~~~~~r~~~~LSGGq~QRVal 149 (359)
T 3fvq_A 81 RLGYLVQEGVLFPHLTVYRNIAYGLGNGKGRTAQERQRIEAMLELT-----------GISELAGRYPHELSGGQQQRAAL 149 (359)
T ss_dssp CCEEECTTCCCCTTSCHHHHHHTTSTTSSCCSHHHHHHHHHHHHHH-----------TCGGGTTSCGGGSCHHHHHHHHH
T ss_pred CEEEEeCCCcCCCCCCHHHHHHHHHHHcCCChHHHHHHHHHHHHHc-----------CCchHhcCChhhCCHHHHHHHHH
Confidence 8999999999995 69999999975321 12 2233333332 55556677778999999999999
Q ss_pred HHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh--CCCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChhhHhcC
Q 000984 534 ARAILKDPRILLLDEATSALDAESEKVVQEALDRIM--VNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVED 610 (1198)
Q Consensus 534 ARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~--~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 610 (1198)
||||+.+|++||||||||+||+.....+.+.+.++. .++|+|+|||+++.+.. ||||++|++|+|++.|+++++..+
T Consensus 150 ArAL~~~P~lLLLDEPts~LD~~~r~~l~~~l~~~~~~~g~tvi~vTHd~~ea~~~aDri~vl~~G~i~~~g~~~el~~~ 229 (359)
T 3fvq_A 150 ARALAPDPELILLDEPFSALDEQLRRQIREDMIAALRANGKSAVFVSHDREEALQYADRIAVMKQGRILQTASPHELYRQ 229 (359)
T ss_dssp HHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHHHHCSEEEEEETTEEEEEECHHHHHHS
T ss_pred HHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHCCEEEEEECCEEEEEeCHHHHHhC
Confidence 999999999999999999999999999888776653 47899999999998765 999999999999999999999987
Q ss_pred CCchhH
Q 000984 611 PEGAYS 616 (1198)
Q Consensus 611 ~~~~~~ 616 (1198)
+...+.
T Consensus 230 p~~~~~ 235 (359)
T 3fvq_A 230 PADLDA 235 (359)
T ss_dssp CSCHHH
T ss_pred cccHHH
Confidence 655444
|
| >2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-43 Score=386.08 Aligned_cols=219 Identities=33% Similarity=0.553 Sum_probs=185.3
Q ss_pred cEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecC--CcCHHHHhc
Q 000984 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLK--EFQLQWIRK 460 (1198)
Q Consensus 383 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~--~~~~~~~r~ 460 (1198)
.|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++. ..+...+|+
T Consensus 24 ~l~i~~l~~~y~~---~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~ 100 (263)
T 2olj_A 24 MIDVHQLKKSFGS---LEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKVRE 100 (263)
T ss_dssp SEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEESSSTTCCHHHHHH
T ss_pred eEEEEeEEEEECC---EEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCEECCCccccHHHHhC
Confidence 4999999999953 46999999999999999999999999999999999999999999999999985 344566788
Q ss_pred ceEEEcCCCCCCcc-cHHHHHhcCC---CCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHh
Q 000984 461 KIGLVSQEPVLFTG-SIKDNIAYGK---DDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARA 536 (1198)
Q Consensus 461 ~i~~v~Q~~~l~~~-ti~~Ni~~~~---~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARa 536 (1198)
+|+||+|++.+|.. |++||+.++. .....++..+ .+.+.++.+ |++........+||||||||++||||
T Consensus 101 ~i~~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~L~~~~~~~~~~LSgGqkQRv~lAra 173 (263)
T 2olj_A 101 EVGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEA-----KAMELLDKV--GLKDKAHAYPDSLSGGQAQRVAIARA 173 (263)
T ss_dssp HEEEECSSCCCCTTSCHHHHHHHHHHHTSCCCHHHHHH-----HHHHHHHHT--TCGGGTTSCGGGSCHHHHHHHHHHHH
T ss_pred cEEEEeCCCcCCCCCCHHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHHC--CCchHhcCChhhCCHHHHHHHHHHHH
Confidence 99999999998865 9999998842 1122222111 112233443 55555667778999999999999999
Q ss_pred hccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh-CCCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChhhHhcCC
Q 000984 537 ILKDPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVEDP 611 (1198)
Q Consensus 537 l~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~ 611 (1198)
|+.+|++|||||||++||+.+.+.+.+.|+++. +++|+|++||+++.+.. ||+|++|++|++++.|+++++.+++
T Consensus 174 L~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~ 250 (263)
T 2olj_A 174 LAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVTHEMGFAREVGDRVLFMDGGYIIEEGKPEDLFDRP 250 (263)
T ss_dssp HTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSC
T ss_pred HHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhCc
Confidence 999999999999999999999999999998874 47899999999999874 9999999999999999999997653
|
| >4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-43 Score=389.75 Aligned_cols=213 Identities=27% Similarity=0.426 Sum_probs=185.9
Q ss_pred cEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcce
Q 000984 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKI 462 (1198)
Q Consensus 383 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i 462 (1198)
.++++|++++|+. .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.+.+.+++.+
T Consensus 11 ~l~~~~l~~~~~~---~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~i 87 (266)
T 4g1u_C 11 LLEASHLHYHVQQ---QALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPKALARTR 87 (266)
T ss_dssp EEEEEEEEEEETT---EEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSCCSSCEEEETTEETTTSCHHHHHHHE
T ss_pred eEEEEeEEEEeCC---eeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCCHHHHhheE
Confidence 5899999999963 5699999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEcCCCCC-CcccHHHHHhcCCCCCC----HHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhh
Q 000984 463 GLVSQEPVL-FTGSIKDNIAYGKDDAT----TEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAI 537 (1198)
Q Consensus 463 ~~v~Q~~~l-~~~ti~~Ni~~~~~~~~----~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal 537 (1198)
+|++|++.+ +..||+||+.++..... .+++.++++.+ |+.........+||||||||++|||||
T Consensus 88 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~-----------~l~~~~~~~~~~LSgGq~QRv~iAraL 156 (266)
T 4g1u_C 88 AVMRQYSELAFPFSVSEVIQMGRAPYGGSQDRQALQQVMAQT-----------DCLALAQRDYRVLSGGEQQRVQLARVL 156 (266)
T ss_dssp EEECSCCCCCSCCBHHHHHHGGGTTSCSTTHHHHHHHHHHHT-----------TCSTTTTSBGGGCCHHHHHHHHHHHHH
T ss_pred EEEecCCccCCCCCHHHHHHhhhhhcCcHHHHHHHHHHHHHc-----------CChhHhcCCcccCCHHHHHHHHHHHHH
Confidence 999999976 57899999998753221 23344444433 333344555668999999999999999
Q ss_pred cc------CCCEEEEeCCCCCCCHHhHHHHHHHHHHHhC--CCeEEEEecCcchhh-ccCEEEEEeCCEEEEecChhhHh
Q 000984 538 LK------DPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKGTHSKLV 608 (1198)
Q Consensus 538 ~~------~~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~ 608 (1198)
++ +|++||||||||+||+.+.+.+.+.++++.+ ++|+|+|||+++.+. .||+|++|++|++++.|+++++.
T Consensus 157 ~~~~~~~~~p~lLllDEPts~LD~~~~~~i~~~l~~l~~~~~~tvi~vtHdl~~~~~~~d~v~vl~~G~i~~~g~~~~~~ 236 (266)
T 4g1u_C 157 AQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQEPLAVCCVLHDLNLAALYADRIMLLAQGKLVACGTPEEVL 236 (266)
T ss_dssp HHTCCSSCCCEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSSEEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHC
T ss_pred hcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHHHHcCCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEEcCHHHHh
Confidence 99 9999999999999999999999999988753 469999999999986 49999999999999999999986
Q ss_pred c
Q 000984 609 E 609 (1198)
Q Consensus 609 ~ 609 (1198)
.
T Consensus 237 ~ 237 (266)
T 4g1u_C 237 N 237 (266)
T ss_dssp C
T ss_pred C
Confidence 4
|
| >3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-43 Score=402.95 Aligned_cols=223 Identities=26% Similarity=0.459 Sum_probs=189.3
Q ss_pred cEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcce
Q 000984 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKI 462 (1198)
Q Consensus 383 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i 462 (1198)
.|+++|++++|+. ..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+.. +++|
T Consensus 3 ~l~~~~l~~~yg~---~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~~~~~~~~--~r~i 77 (381)
T 3rlf_A 3 SVQLQNVTKAWGE---VVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPA--ERGV 77 (381)
T ss_dssp CEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGG--GSCE
T ss_pred EEEEEeEEEEECC---EEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCCCCCeEEEECCEECCCCCHH--HCCE
Confidence 4899999999963 4699999999999999999999999999999999999999999999999999887765 4679
Q ss_pred EEEcCCCCCCc-ccHHHHHhcCCC--CCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhhcc
Q 000984 463 GLVSQEPVLFT-GSIKDNIAYGKD--DATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILK 539 (1198)
Q Consensus 463 ~~v~Q~~~l~~-~ti~~Ni~~~~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal~~ 539 (1198)
+||+|++.+|. .||+|||.|+.. ..+.++..+.. .+.++.+ |++........+||||||||++|||||+.
T Consensus 78 g~VfQ~~~l~p~ltV~eni~~~~~~~~~~~~~~~~~v-----~~~l~~~--~L~~~~~r~p~~LSGGqrQRVaiArAL~~ 150 (381)
T 3rlf_A 78 GMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRV-----NQVAEVL--QLAHLLDRKPKALSGGQRQRVAIGRTLVA 150 (381)
T ss_dssp EEECTTCCCCTTSCHHHHHTHHHHHTTCCHHHHHHHH-----HHHHHHT--TCGGGTTCCGGGSCHHHHHHHHHHHHHHH
T ss_pred EEEecCCcCCCCCCHHHHHHHHHHHcCCCHHHHHHHH-----HHHHHHc--CCchhhcCChhHCCHHHHHHHHHHHHHHc
Confidence 99999999995 599999998632 12333222211 1223333 55556677778999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHhHHHHHHHHHHHhC--CCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChhhHhcCCCchhH
Q 000984 540 DPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVEDPEGAYS 616 (1198)
Q Consensus 540 ~~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~ 616 (1198)
+|++||||||||+||+.....+.+.|+++.+ +.|+|+|||+++.+.. ||||++|++|+|++.|+++++...+...|.
T Consensus 151 ~P~lLLLDEPts~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~ea~~~aDri~vl~~G~i~~~g~~~~l~~~p~~~~v 230 (381)
T 3rlf_A 151 EPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYPADRFV 230 (381)
T ss_dssp CCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHHCCSBHHH
T ss_pred CCCEEEEECCCcCCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEEeCHHHHHhCCccHHH
Confidence 9999999999999999999999999988753 7999999999998765 999999999999999999999987665554
Q ss_pred H
Q 000984 617 Q 617 (1198)
Q Consensus 617 ~ 617 (1198)
.
T Consensus 231 ~ 231 (381)
T 3rlf_A 231 A 231 (381)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=6.3e-43 Score=383.65 Aligned_cols=217 Identities=28% Similarity=0.454 Sum_probs=183.3
Q ss_pred ccEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcc
Q 000984 382 GDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKK 461 (1198)
Q Consensus 382 g~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~ 461 (1198)
+.|+++|++++|+. .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+ ....+|++
T Consensus 14 ~~l~i~~l~~~y~~---~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~-~~~~~~~~ 89 (256)
T 1vpl_A 14 GAVVVKDLRKRIGK---KEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVE-EPHEVRKL 89 (256)
T ss_dssp CCEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTT-CHHHHHTT
T ss_pred CeEEEEEEEEEECC---EEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCc-cHHHHhhc
Confidence 46999999999952 469999999999999999999999999999999999999999999999999876 45667889
Q ss_pred eEEEcCCCCCCcc-cHHHHHhcCCC--CCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhhc
Q 000984 462 IGLVSQEPVLFTG-SIKDNIAYGKD--DATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAIL 538 (1198)
Q Consensus 462 i~~v~Q~~~l~~~-ti~~Ni~~~~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal~ 538 (1198)
|+|+||+|.+|.. |++||+.++.. ....++..+. +.+.++.+ |++........+||||||||++|||||+
T Consensus 90 i~~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~-----~~~~l~~~--gL~~~~~~~~~~LSgGq~qRv~lAraL~ 162 (256)
T 1vpl_A 90 ISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEM-----VERATEIA--GLGEKIKDRVSTYSKGMVRKLLIARALM 162 (256)
T ss_dssp EEEECTTCCCCTTSBHHHHHHHHHHHHCCCHHHHHHH-----HHHHHHHH--CCGGGGGSBGGGCCHHHHHHHHHHHHHT
T ss_pred EEEEcCCCCCCCCCcHHHHHHHHHHHcCCChHHHHHH-----HHHHHHHC--CCchHhcCChhhCCHHHHHHHHHHHHHH
Confidence 9999999998865 99999987421 1122211111 11122222 5555556667789999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh-CCCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChhhHhc
Q 000984 539 KDPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVE 609 (1198)
Q Consensus 539 ~~~~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~ 609 (1198)
++|++||||||||+||+.+.+.+.+.|+++. +++|+|++||+++.+.. ||+|++|++|++++.|+++++.+
T Consensus 163 ~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 235 (256)
T 1vpl_A 163 VNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELKE 235 (256)
T ss_dssp TCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHTTTCSEEEEEETTEEEEEEEHHHHHH
T ss_pred cCCCEEEEeCCccccCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHCCEEEEEECCEEEEecCHHHHHH
Confidence 9999999999999999999999999998875 47899999999999876 99999999999999999999864
|
| >1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-42 Score=382.71 Aligned_cols=220 Identities=30% Similarity=0.530 Sum_probs=183.4
Q ss_pred cEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCC----------
Q 000984 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKE---------- 452 (1198)
Q Consensus 383 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~---------- 452 (1198)
.|+++|++++|+. .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++..
T Consensus 6 ~l~i~~l~~~y~~---~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 82 (262)
T 1b0u_A 6 KLHVIDLHKRYGG---HEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKV 82 (262)
T ss_dssp CEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEE
T ss_pred eEEEeeEEEEECC---EEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEccccccccccccc
Confidence 4899999999953 469999999999999999999999999999999999999999999999999862
Q ss_pred cCH---HHHhcceEEEcCCCCCCcc-cHHHHHhcCC---CCCCHHHHHHHHHHhcHHHHHHhCCCCccch-hcCCCCCCC
Q 000984 453 FQL---QWIRKKIGLVSQEPVLFTG-SIKDNIAYGK---DDATTEEIRVATELANAAKFIDKLPQGIDTL-VGEHGTQLS 524 (1198)
Q Consensus 453 ~~~---~~~r~~i~~v~Q~~~l~~~-ti~~Ni~~~~---~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~-v~~~g~~lS 524 (1198)
.+. ..+|++++||+|++.+|.. ||+||+.++. .....++..+ .+.+.++.+ |++.. ......+||
T Consensus 83 ~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~L~~~~~~~~~~~LS 155 (262)
T 1b0u_A 83 ADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARE-----RALKYLAKV--GIDERAQGKYPVHLS 155 (262)
T ss_dssp SCHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHH-----HHHHHHHHT--TCCHHHHTSCGGGSC
T ss_pred cChhhHHHHhcceEEEecCcccCCCCcHHHHHHhhHHHhcCCCHHHHHH-----HHHHHHHHc--CCCchhhcCCcccCC
Confidence 333 3467889999999998865 9999998742 1122221111 112233333 55555 566778899
Q ss_pred hHHHHHHhHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh-CCCeEEEEecCcchhh-ccCEEEEEeCCEEEEec
Q 000984 525 GGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKG 602 (1198)
Q Consensus 525 gGqkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~-~~d~i~~l~~G~i~~~g 602 (1198)
||||||++|||||+.+|++||||||||+||+.+.+.+.+.|+++. +++|+|++||+++.+. .||+|++|++|++++.|
T Consensus 156 gGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g 235 (262)
T 1b0u_A 156 GGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEG 235 (262)
T ss_dssp HHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHHHHHHHCSEEEEEETTEEEEEE
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeC
Confidence 999999999999999999999999999999999999999998875 4789999999999986 49999999999999999
Q ss_pred ChhhHhcCCC
Q 000984 603 THSKLVEDPE 612 (1198)
Q Consensus 603 ~~~~l~~~~~ 612 (1198)
+++++..++.
T Consensus 236 ~~~~~~~~~~ 245 (262)
T 1b0u_A 236 DPEQVFGNPQ 245 (262)
T ss_dssp CHHHHHHSCC
T ss_pred CHHHHHhCcc
Confidence 9999986543
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-42 Score=434.78 Aligned_cols=196 Identities=25% Similarity=0.339 Sum_probs=157.5
Q ss_pred cEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcce
Q 000984 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKI 462 (1198)
Q Consensus 383 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i 462 (1198)
.+...|++++|++ +.+|+|+||++++|++++|+||||||||||+++|+| |+| +|.+... +.++
T Consensus 435 ~L~~~~ls~~yg~---~~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~Lag------G~i--~g~~~~~------~~~~ 497 (986)
T 2iw3_A 435 DLCNCEFSLAYGA---KILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIAN------GQV--DGFPTQE------ECRT 497 (986)
T ss_dssp EEEEEEEEEEETT---EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHH------TCS--TTCCCTT------TSCE
T ss_pred eeEEeeEEEEECC---EEeEecceEEEcCCCEEEEECCCCCCHHHHHHHHhC------CCc--CCCcccc------ceeE
Confidence 5778899999963 469999999999999999999999999999999996 554 5544321 1247
Q ss_pred EEEcCCC-CCC-cccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhhccC
Q 000984 463 GLVSQEP-VLF-TGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKD 540 (1198)
Q Consensus 463 ~~v~Q~~-~l~-~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal~~~ 540 (1198)
+|++|++ .++ ..|+++|+.+..... .+++.++++..++. +........+||||||||++|||||+.+
T Consensus 498 ~~v~q~~~~~~~~ltv~e~l~~~~~~~-~~~v~~~L~~lgL~----------~~~~~~~~~~LSGGqkQRvaLArAL~~~ 566 (986)
T 2iw3_A 498 VYVEHDIDGTHSDTSVLDFVFESGVGT-KEAIKDKLIEFGFT----------DEMIAMPISALSGGWKMKLALARAVLRN 566 (986)
T ss_dssp EETTCCCCCCCTTSBHHHHHHTTCSSC-HHHHHHHHHHTTCC----------HHHHHSBGGGCCHHHHHHHHHHHHHHTT
T ss_pred EEEcccccccccCCcHHHHHHHhhcCH-HHHHHHHHHHcCCC----------hhhhcCCcccCCHHHHHHHHHHHHHhcC
Confidence 9999986 333 569999998621111 45555555555441 1123344457999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHhHHHHHHHHHHHhCCCeEEEEecCcchhhc-cCEEEEEeCCEEE-EecChhhHh
Q 000984 541 PRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRN-ADMIAVIHRGKIV-EKGTHSKLV 608 (1198)
Q Consensus 541 ~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~-~~g~~~~l~ 608 (1198)
|++|||||||++||+.+.+.+.+.|++ .++|+|+|||+++.+.. ||+|++|++|+++ ..|+++++.
T Consensus 567 P~lLLLDEPTs~LD~~~~~~l~~~L~~--~g~tvIivSHdl~~l~~~adrii~L~~G~iv~~~G~~~e~~ 634 (986)
T 2iw3_A 567 ADILLLDEPTNHLDTVNVAWLVNYLNT--CGITSITISHDSVFLDNVCEYIINYEGLKLRKYKGNFTEFV 634 (986)
T ss_dssp CSEEEEESTTTTCCHHHHHHHHHHHHH--SCSEEEEECSCHHHHHHHCSEEEEEETTEEEEEESCHHHHH
T ss_pred CCEEEEECCccCCCHHHHHHHHHHHHh--CCCEEEEEECCHHHHHHhCCEEEEEECCeeecCCCCHHHHH
Confidence 999999999999999999999999988 68999999999999875 9999999999997 578887764
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-42 Score=383.58 Aligned_cols=214 Identities=23% Similarity=0.398 Sum_probs=183.9
Q ss_pred cEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCH-HHHhcc
Q 000984 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQL-QWIRKK 461 (1198)
Q Consensus 383 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~-~~~r~~ 461 (1198)
.|+++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.+. ...|++
T Consensus 7 ~l~i~~l~~~y~~---~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 83 (257)
T 1g6h_A 7 ILRTENIVKYFGE---FKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYG 83 (257)
T ss_dssp EEEEEEEEEEETT---EEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHT
T ss_pred EEEEeeeEEEECC---EeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCC
Confidence 4899999999953 469999999999999999999999999999999999999999999999999987764 345778
Q ss_pred eEEEcCCCCCCc-ccHHHHHhcCCCC--C-------------CHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCCh
Q 000984 462 IGLVSQEPVLFT-GSIKDNIAYGKDD--A-------------TTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSG 525 (1198)
Q Consensus 462 i~~v~Q~~~l~~-~ti~~Ni~~~~~~--~-------------~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSg 525 (1198)
|+||||+|.+|. .|++||+.++... . ..++.. ..+.+.++.+ |++....+...+|||
T Consensus 84 i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~LSg 156 (257)
T 1g6h_A 84 IVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMV-----EKAFKILEFL--KLSHLYDRKAGELSG 156 (257)
T ss_dssp EEECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHH-----HHHHHHHHHT--TCGGGTTSBGGGSCH
T ss_pred EEEEccCCccCCCCcHHHHHHHHHhhhccCcccccccccccCCHHHHH-----HHHHHHHHHc--CCchhhCCCchhCCH
Confidence 999999998885 6999999986422 1 111111 1223445555 677777788889999
Q ss_pred HHHHHHhHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhC-CCeEEEEecCcchhh-ccCEEEEEeCCEEEEecC
Q 000984 526 GQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMV-NRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKGT 603 (1198)
Q Consensus 526 Gqkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~-~~t~i~itH~~~~~~-~~d~i~~l~~G~i~~~g~ 603 (1198)
|||||++|||||+++|++||||||||+||+.+.+.+.+.|+++.+ ++|+|++||+++.+. .||+|++|++|++++.|+
T Consensus 157 GqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~ 236 (257)
T 1g6h_A 157 GQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGR 236 (257)
T ss_dssp HHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCSTTGGGCSEEEEEETTEEEEEEE
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEEeC
Confidence 999999999999999999999999999999999999999988754 799999999999886 599999999999999999
Q ss_pred hhh
Q 000984 604 HSK 606 (1198)
Q Consensus 604 ~~~ 606 (1198)
+++
T Consensus 237 ~~~ 239 (257)
T 1g6h_A 237 GEE 239 (257)
T ss_dssp SHH
T ss_pred HHH
Confidence 988
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A | Back alignment and structure |
|---|
Probab=100.00 E-value=9.2e-43 Score=376.16 Aligned_cols=211 Identities=26% Similarity=0.403 Sum_probs=177.6
Q ss_pred cEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHH---Hh
Q 000984 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQW---IR 459 (1198)
Q Consensus 383 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~---~r 459 (1198)
.|+++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+... +|
T Consensus 4 ~l~~~~l~~~y~~---~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 80 (224)
T 2pcj_A 4 ILRAENIKKVIRG---YEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELSLLR 80 (224)
T ss_dssp EEEEEEEEEEETT---EEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSCCSEEEEEETTEECCSSCHHHHHHHH
T ss_pred EEEEEeEEEEECC---EeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHHHH
Confidence 4899999999963 46999999999999999999999999999999999999999999999999998876543 34
Q ss_pred -cceEEEcCCCCCCc-ccHHHHHhcCCC--CCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHH
Q 000984 460 -KKIGLVSQEPVLFT-GSIKDNIAYGKD--DATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIAR 535 (1198)
Q Consensus 460 -~~i~~v~Q~~~l~~-~ti~~Ni~~~~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lAR 535 (1198)
++|+||||+|.+|. .|++||+.++.. ....++..+ .+.+.++.+ |+.........+||||||||++|||
T Consensus 81 ~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LSgGq~qrv~lar 153 (224)
T 2pcj_A 81 NRKLGFVFQFHYLIPELTALENVIVPMLKMGKPKKEAKE-----RGEYLLSEL--GLGDKLSRKPYELSGGEQQRVAIAR 153 (224)
T ss_dssp HHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCHHHHHH-----HHHHHHHHT--TCTTCTTCCGGGSCHHHHHHHHHHH
T ss_pred hCcEEEEecCcccCCCCCHHHHHHhHHHHcCCCHHHHHH-----HHHHHHHHc--CCchhhhCChhhCCHHHHHHHHHHH
Confidence 68999999998885 699999987521 111111111 112233333 5555566677899999999999999
Q ss_pred hhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh-CCCeEEEEecCcchhhccCEEEEEeCCEEEEecC
Q 000984 536 AILKDPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGT 603 (1198)
Q Consensus 536 al~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~ 603 (1198)
||+.+|++|||||||++||+.+.+.+.+.++++. +++|+|++||+++.+..||+|++|++|++++.|+
T Consensus 154 al~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~d~v~~l~~G~i~~~g~ 222 (224)
T 2pcj_A 154 ALANEPILLFADEPTGNLDSANTKRVMDIFLKINEGGTSIVMVTHERELAELTHRTLEMKDGKVVGEIT 222 (224)
T ss_dssp HTTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHTTSSEEEEEETTEEEEEEE
T ss_pred HHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhCCEEEEEECCEEEEEee
Confidence 9999999999999999999999999999998874 4789999999999887799999999999999886
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.5e-43 Score=388.54 Aligned_cols=209 Identities=28% Similarity=0.484 Sum_probs=175.7
Q ss_pred cccEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhc
Q 000984 381 RGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRK 460 (1198)
Q Consensus 381 ~g~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~ 460 (1198)
.+.|+++|++|.+ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 38 ~~~l~~~~l~~~~-----~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g------------- 99 (290)
T 2bbs_A 38 DDSLSFSNFSLLG-----TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG------------- 99 (290)
T ss_dssp ------------C-----CCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSCEEEEEEECCS-------------
T ss_pred CceEEEEEEEEcC-----ceEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECC-------------
Confidence 3469999999864 3599999999999999999999999999999999999999999999998
Q ss_pred ceEEEcCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhhccC
Q 000984 461 KIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKD 540 (1198)
Q Consensus 461 ~i~~v~Q~~~l~~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal~~~ 540 (1198)
+|+|+||+|.+|.+|++||+. +.. ....+..++++.+++.+.+..+|.++++.+++.+.+||||||||++|||||+++
T Consensus 100 ~i~~v~Q~~~l~~~tv~enl~-~~~-~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~QRv~lAraL~~~ 177 (290)
T 2bbs_A 100 RISFCSQNSWIMPGTIKENII-GVS-YDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKD 177 (290)
T ss_dssp CEEEECSSCCCCSSBHHHHHH-TTC-CCHHHHHHHHHHTTCHHHHHTSTTGGGCBC----CCCCHHHHHHHHHHHHHHSC
T ss_pred EEEEEeCCCccCcccHHHHhh-Ccc-cchHHHHHHHHHhChHHHHHhccccccchhcCccCcCCHHHHHHHHHHHHHHCC
Confidence 699999999999999999998 543 344555667777888888999999999999999999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHhHHHHHHHH-HHHhCCCeEEEEecCcchhhccCEEEEEeCCEEEEecChhhHhc
Q 000984 541 PRILLLDEATSALDAESEKVVQEAL-DRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVE 609 (1198)
Q Consensus 541 ~~illlDe~ts~lD~~~~~~i~~~i-~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 609 (1198)
|++||||||||+||+.+.+.+.+.+ +++.+++|+|++||+++.+..||+|++|++|++++.|+++++.+
T Consensus 178 p~lllLDEPts~LD~~~~~~i~~~ll~~~~~~~tviivtHd~~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 247 (290)
T 2bbs_A 178 ADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQN 247 (290)
T ss_dssp CSEEEEESTTTTCCHHHHHHHHHHCCCCCTTTSEEEEECCCHHHHHHSSEEEEEETTEEEEEECHHHHHH
T ss_pred CCEEEEECCcccCCHHHHHHHHHHHHHHhhCCCEEEEEecCHHHHHcCCEEEEEECCeEEEeCCHHHHhh
Confidence 9999999999999999999998864 44456899999999999988899999999999999999999865
|
| >2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-42 Score=394.30 Aligned_cols=217 Identities=30% Similarity=0.527 Sum_probs=186.3
Q ss_pred cEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcce
Q 000984 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKI 462 (1198)
Q Consensus 383 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i 462 (1198)
.|+++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.+.. +++|
T Consensus 3 ~l~~~~l~~~y~~---~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~--~r~i 77 (359)
T 2yyz_A 3 SIRVVNLKKYFGK---VKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPK--YREV 77 (359)
T ss_dssp CEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGG--GTTE
T ss_pred EEEEEEEEEEECC---EEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCCCCccEEEECCEECCCCChh--hCcE
Confidence 3899999999953 4699999999999999999999999999999999999999999999999999877654 5689
Q ss_pred EEEcCCCCCCc-ccHHHHHhcCCCCCC--H----HHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHH
Q 000984 463 GLVSQEPVLFT-GSIKDNIAYGKDDAT--T----EEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIAR 535 (1198)
Q Consensus 463 ~~v~Q~~~l~~-~ti~~Ni~~~~~~~~--~----~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lAR 535 (1198)
+||+|++.+|. .||+||+.|+..... . +++.+++ +.+ |++........+||||||||++|||
T Consensus 78 g~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l---------~~~--~L~~~~~r~~~~LSgGq~QRvalAr 146 (359)
T 2yyz_A 78 GMVFQNYALYPHMTVFENIAFPLRARRISKDEVEKRVVEIA---------RKL--LIDNLLDRKPTQLSGGQQQRVALAR 146 (359)
T ss_dssp EEECSSCCCCTTSCHHHHHHGGGSSSCSHHHHTTHHHHHHH---------HHT--TCGGGTTSCGGGSCHHHHHHHHHHH
T ss_pred EEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHH---------HHc--CCchHhcCChhhCCHHHHHHHHHHH
Confidence 99999999985 599999999753221 1 2233333 333 5555566667799999999999999
Q ss_pred hhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhC--CCeEEEEecCcchhh-ccCEEEEEeCCEEEEecChhhHhcCCC
Q 000984 536 AILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKGTHSKLVEDPE 612 (1198)
Q Consensus 536 al~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~~~~ 612 (1198)
||+++|++||||||||+||+.+.+.+.+.|+++.+ +.|+|+|||+++.+. .||+|++|++|+|++.|+++++..++.
T Consensus 147 AL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~l~~~p~ 226 (359)
T 2yyz_A 147 ALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELGITSVYVTHDQAEAMTMASRIAVFNQGKLVQYGTPDEVYDSPK 226 (359)
T ss_dssp HHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSCS
T ss_pred HHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhCcc
Confidence 99999999999999999999999999999988753 789999999999875 599999999999999999999988755
Q ss_pred chh
Q 000984 613 GAY 615 (1198)
Q Consensus 613 ~~~ 615 (1198)
..|
T Consensus 227 ~~~ 229 (359)
T 2yyz_A 227 NMF 229 (359)
T ss_dssp BHH
T ss_pred cHH
Confidence 444
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-42 Score=383.58 Aligned_cols=215 Identities=30% Similarity=0.523 Sum_probs=182.4
Q ss_pred EEEEeEEEEcCCCCC--CccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcc
Q 000984 384 IELRDVYFSYPARPN--EQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKK 461 (1198)
Q Consensus 384 i~~~~v~~~y~~~~~--~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~ 461 (1198)
|+++|++++|+.... +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+. .+|++
T Consensus 3 l~~~~l~~~y~~~~~~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~---~~~~~ 79 (266)
T 2yz2_A 3 IEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGY---EIRRN 79 (266)
T ss_dssp EEEEEEEEEESTTSTTCEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECCHH---HHGGG
T ss_pred EEEEEEEEEecCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEECchH---Hhhhh
Confidence 789999999962111 4699999999999999999999999999999999999999999999999998643 67889
Q ss_pred eEEEcCCC--CCCcccHHHHHhcCCCC-----CCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHH
Q 000984 462 IGLVSQEP--VLFTGSIKDNIAYGKDD-----ATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIA 534 (1198)
Q Consensus 462 i~~v~Q~~--~l~~~ti~~Ni~~~~~~-----~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lA 534 (1198)
|+|++|+| .++..|++||+.++... ...+++.++++..++.. .........+||||||||++||
T Consensus 80 i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~gl~~---------~~~~~~~~~~LSgGq~qRv~lA 150 (266)
T 2yz2_A 80 IGIAFQYPEDQFFAERVFDEVAFAVKNFYPDRDPVPLVKKAMEFVGLDF---------DSFKDRVPFFLSGGEKRRVAIA 150 (266)
T ss_dssp EEEECSSGGGGCCCSSHHHHHHHTTTTTCTTSCSHHHHHHHHHHTTCCH---------HHHTTCCGGGSCHHHHHHHHHH
T ss_pred EEEEeccchhhcCCCcHHHHHHHHHHhcCCHHHHHHHHHHHHHHcCcCC---------cccccCChhhCCHHHHHHHHHH
Confidence 99999997 56789999999986421 12345555555554430 0333445568999999999999
Q ss_pred HhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh-CCCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChhhHhcC
Q 000984 535 RAILKDPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVED 610 (1198)
Q Consensus 535 Ral~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 610 (1198)
|||+++|++||||||||+||+.+.+.+.+.|+++. +++|+|++||+++.+.. ||+|++|++|++++.|+++++.++
T Consensus 151 raL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tii~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 228 (266)
T 2yz2_A 151 SVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHDIETVINHVDRVVVLEKGKKVFDGTRMEFLEK 228 (266)
T ss_dssp HHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCTTTGGGCSEEEEEETTEEEEEEEHHHHHHH
T ss_pred HHHHcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 99999999999999999999999999999998874 47899999999999875 999999999999999999988754
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-42 Score=386.80 Aligned_cols=217 Identities=24% Similarity=0.369 Sum_probs=183.6
Q ss_pred ccEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecC--CcCHHHHh
Q 000984 382 GDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLK--EFQLQWIR 459 (1198)
Q Consensus 382 g~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~--~~~~~~~r 459 (1198)
..|+++|++++|+. .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++. ..+...+|
T Consensus 20 ~~l~~~~l~~~y~~---~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~ 96 (279)
T 2ihy_A 20 MLIQLDQIGRMKQG---KTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKMPGKVGYSAETVR 96 (279)
T ss_dssp EEEEEEEEEEEETT---EEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTBCCC---CCHHHHH
T ss_pred ceEEEEeEEEEECC---EEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCeEEEECCEEcccccCCHHHHc
Confidence 35999999999963 46999999999999999999999999999999999999999999999999987 77777888
Q ss_pred cceEEEcCCCCC-Ccc--cHHHHHhcCCCC-------CCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHH
Q 000984 460 KKIGLVSQEPVL-FTG--SIKDNIAYGKDD-------ATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQ 529 (1198)
Q Consensus 460 ~~i~~v~Q~~~l-~~~--ti~~Ni~~~~~~-------~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkq 529 (1198)
++|+|++|+|.+ |.. |++||+.++... ..++...+ +.+.++.+ |++........+|||||||
T Consensus 97 ~~i~~v~Q~~~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~------~~~~l~~~--gl~~~~~~~~~~LSgGqkq 168 (279)
T 2ihy_A 97 QHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNE------AHQLLKLV--GMSAKAQQYIGYLSTGEKQ 168 (279)
T ss_dssp TTEEEECHHHHTTSCTTSBHHHHHHTTC---------CCHHHHHH------HHHHHHHT--TCGGGTTSBGGGSCHHHHH
T ss_pred CcEEEEEcCcccccCCCCCHHHHHHhhhhhccccccCCcHHHHHH------HHHHHHHc--CChhHhcCChhhCCHHHHH
Confidence 999999999864 544 999999986421 11211111 12233333 5665667777899999999
Q ss_pred HHhHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhC-CCeE--EEEecCcchhh-ccCEEEEEeCCEEEEecChh
Q 000984 530 RIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMV-NRTT--VIVAHRLSTVR-NADMIAVIHRGKIVEKGTHS 605 (1198)
Q Consensus 530 ri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~-~~t~--i~itH~~~~~~-~~d~i~~l~~G~i~~~g~~~ 605 (1198)
|++|||||+.+|++|||||||++||+.+.+.+.+.|+++.+ ++|+ |+|||+++.+. .||+|++|++|++++.|+++
T Consensus 169 Rv~lAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tv~~iivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~ 248 (279)
T 2ihy_A 169 RVMIARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAMIYVTHFIEEITANFSKILLLKDGQSIQQGAVE 248 (279)
T ss_dssp HHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHCTTCEEEEEESCGGGCCTTCCEEEEEETTEEEEEEEHH
T ss_pred HHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHHHCCCEEEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHH
Confidence 99999999999999999999999999999999999988753 7899 99999999885 59999999999999999999
Q ss_pred hHhc
Q 000984 606 KLVE 609 (1198)
Q Consensus 606 ~l~~ 609 (1198)
++.+
T Consensus 249 ~~~~ 252 (279)
T 2ihy_A 249 DILT 252 (279)
T ss_dssp HHCS
T ss_pred HHhc
Confidence 8864
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-42 Score=374.12 Aligned_cols=213 Identities=32% Similarity=0.481 Sum_probs=180.3
Q ss_pred EEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcceE
Q 000984 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIG 463 (1198)
Q Consensus 384 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~ 463 (1198)
|+++|++++|+. +|+|+||++++ |+++|+||||||||||+++|+|+++|++|+|.++|.++.+.. ..|++|+
T Consensus 2 l~~~~l~~~y~~-----~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~--~~~~~i~ 73 (240)
T 2onk_A 2 FLKVRAEKRLGN-----FRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLP--PERRGIG 73 (240)
T ss_dssp CEEEEEEEEETT-----EEEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSC--TTTSCCB
T ss_pred EEEEEEEEEeCC-----EEeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCc--hhhCcEE
Confidence 689999999942 59999999999 999999999999999999999999999999999999987643 3467899
Q ss_pred EEcCCCCCCcc-cHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhhccCCC
Q 000984 464 LVSQEPVLFTG-SIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPR 542 (1198)
Q Consensus 464 ~v~Q~~~l~~~-ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal~~~~~ 542 (1198)
|+||+|.+|.. |++||+.++........- ...+.+.++.+ |++........+||||||||++||||++++|+
T Consensus 74 ~v~q~~~l~~~ltv~enl~~~~~~~~~~~~-----~~~~~~~l~~~--~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~ 146 (240)
T 2onk_A 74 FVPQDYALFPHLSVYRNIAYGLRNVERVER-----DRRVREMAEKL--GIAHLLDRKPARLSGGERQRVALARALVIQPR 146 (240)
T ss_dssp CCCSSCCCCTTSCHHHHHHTTCTTSCHHHH-----HHHHHHHHHTT--TCTTTTTCCGGGSCHHHHHHHHHHHHHTTCCS
T ss_pred EEcCCCccCCCCcHHHHHHHHHHHcCCchH-----HHHHHHHHHHc--CCHHHhcCChhhCCHHHHHHHHHHHHHHcCCC
Confidence 99999999875 999999987533221111 11122334444 55555566677899999999999999999999
Q ss_pred EEEEeCCCCCCCHHhHHHHHHHHHHHhC--CCeEEEEecCcchhh-ccCEEEEEeCCEEEEecChhhHhcCC
Q 000984 543 ILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKGTHSKLVEDP 611 (1198)
Q Consensus 543 illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~~~ 611 (1198)
+|||||||++||+.+.+.+.+.++++.+ ++|+|++||+++.+. .||+|++|++|++++.|+++++.+++
T Consensus 147 lllLDEPts~LD~~~~~~~~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~ 218 (240)
T 2onk_A 147 LLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAMLADEVAVMLNGRIVEKGKLKELFSAK 218 (240)
T ss_dssp SBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSC
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhCc
Confidence 9999999999999999999999988743 799999999999875 59999999999999999999987653
|
| >2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-42 Score=394.59 Aligned_cols=221 Identities=36% Similarity=0.525 Sum_probs=185.8
Q ss_pred cEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcce
Q 000984 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKI 462 (1198)
Q Consensus 383 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i 462 (1198)
.|+++|++++|+. .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.+.. +++|
T Consensus 3 ~l~~~~l~~~y~~---~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~--~r~i 77 (362)
T 2it1_A 3 EIKLENIVKKFGN---FTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPK--DRNV 77 (362)
T ss_dssp CEEEEEEEEESSS---SEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGG--GTTE
T ss_pred EEEEEeEEEEECC---EEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHh--HCcE
Confidence 3899999999953 4699999999999999999999999999999999999999999999999999877654 4689
Q ss_pred EEEcCCCCCCc-ccHHHHHhcCCC--CCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhhcc
Q 000984 463 GLVSQEPVLFT-GSIKDNIAYGKD--DATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILK 539 (1198)
Q Consensus 463 ~~v~Q~~~l~~-~ti~~Ni~~~~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal~~ 539 (1198)
+||+|++.+|. .||+|||.|+.. ....++..+. +.+.++.+ |++........+||||||||++|||||+.
T Consensus 78 g~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~-----v~~~l~~~--~L~~~~~r~~~~LSGGq~QRvalArAL~~ 150 (362)
T 2it1_A 78 GLVFQNWALYPHMTVYKNIAFPLELRKAPREEIDKK-----VREVAKML--HIDKLLNRYPWQLSGGQQQRVAIARALVK 150 (362)
T ss_dssp EEECTTCCCCTTSCHHHHHHHHHHHTTCCHHHHHHH-----HHHHHHHT--TCTTCTTCCGGGSCHHHHHHHHHHHHHTT
T ss_pred EEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHH-----HHHHHHHc--CCchHhhCChhhCCHHHHHHHHHHHHHHc
Confidence 99999999996 599999998631 1122221111 11223333 55555566677999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHhHHHHHHHHHHHhC--CCeEEEEecCcchhh-ccCEEEEEeCCEEEEecChhhHhcCCCchh
Q 000984 540 DPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKGTHSKLVEDPEGAY 615 (1198)
Q Consensus 540 ~~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~ 615 (1198)
+|++||||||||+||+.+.+.+.+.|+++.+ +.|+|+|||+++.+. .||+|++|++|+|++.|+++++..++...|
T Consensus 151 ~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~~~~~p~~~~ 229 (362)
T 2it1_A 151 EPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGITTVYVTHDQAEALAMADRIAVIREGEILQVGTPDEVYYKPKYKF 229 (362)
T ss_dssp CCSEEEEESGGGGSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSCSBHH
T ss_pred CCCEEEEECccccCCHHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCccchH
Confidence 9999999999999999999999999988753 789999999999875 599999999999999999999988755444
|
| >1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.6e-42 Score=393.31 Aligned_cols=221 Identities=26% Similarity=0.453 Sum_probs=182.5
Q ss_pred cEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcce
Q 000984 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKI 462 (1198)
Q Consensus 383 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i 462 (1198)
.|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.+.. +++|
T Consensus 11 ~l~~~~l~~~y~~---~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~--~r~i 85 (372)
T 1v43_A 11 EVKLENLTKRFGN---FTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPK--DRNI 85 (372)
T ss_dssp CEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGG--GGTE
T ss_pred eEEEEEEEEEECC---EEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCCCChh--hCcE
Confidence 4999999999953 4699999999999999999999999999999999999999999999999999877654 5689
Q ss_pred EEEcCCCCCCc-ccHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhhcc
Q 000984 463 GLVSQEPVLFT-GSIKDNIAYGKDD--ATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILK 539 (1198)
Q Consensus 463 ~~v~Q~~~l~~-~ti~~Ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal~~ 539 (1198)
+||+|++.+|. .||+|||.|+... ...++..+. +.+.++.+ |++........+||||||||++|||||+.
T Consensus 86 g~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~-----v~~~l~~~--~L~~~~~r~~~~LSGGq~QRvalArAL~~ 158 (372)
T 1v43_A 86 SMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKR-----VRWAAELL--QIEELLNRYPAQLSGGQRQRVAVARAIVV 158 (372)
T ss_dssp EEEEC------CCCHHHHHHTTCC--CCCHHHHHHH-----HHHHHHHT--TCGGGTTSCTTTCCSSCHHHHHHHHHHTT
T ss_pred EEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHH-----HHHHHHHc--CChhHhcCChhhCCHHHHHHHHHHHHHhc
Confidence 99999999985 5999999997532 222222111 12233333 56666677788999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHhHHHHHHHHHHHhC--CCeEEEEecCcchhh-ccCEEEEEeCCEEEEecChhhHhcCCCchh
Q 000984 540 DPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKGTHSKLVEDPEGAY 615 (1198)
Q Consensus 540 ~~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~ 615 (1198)
+|++||||||||+||+.+.+.+.+.|+++.+ +.|+|+|||+++.+. .||+|++|++|+|++.|+++++..++...|
T Consensus 159 ~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~l~~~p~~~~ 237 (372)
T 1v43_A 159 EPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYLRPNSVF 237 (372)
T ss_dssp CCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHCCSBHH
T ss_pred CCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhCcccHH
Confidence 9999999999999999999999999988753 789999999999875 599999999999999999999988755444
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-42 Score=392.21 Aligned_cols=223 Identities=29% Similarity=0.519 Sum_probs=186.3
Q ss_pred ccEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcc
Q 000984 382 GDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKK 461 (1198)
Q Consensus 382 g~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~ 461 (1198)
..|+++|++++|+. +.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.+. .+++
T Consensus 13 ~~l~~~~l~~~y~g--~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~--~~r~ 88 (355)
T 1z47_A 13 MTIEFVGVEKIYPG--GARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPP--QKRN 88 (355)
T ss_dssp EEEEEEEEEECCTT--STTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCG--GGSS
T ss_pred ceEEEEEEEEEEcC--CCEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECCcCCh--hhCc
Confidence 36999999999931 2469999999999999999999999999999999999999999999999999987654 3678
Q ss_pred eEEEcCCCCCCc-ccHHHHHhcCCC--CCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhhc
Q 000984 462 IGLVSQEPVLFT-GSIKDNIAYGKD--DATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAIL 538 (1198)
Q Consensus 462 i~~v~Q~~~l~~-~ti~~Ni~~~~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal~ 538 (1198)
|+||+|++.+|. .||+|||.|+.. ..+.++..+ .+.+.++.+ |++........+||||||||++|||||+
T Consensus 89 ig~v~Q~~~l~~~ltv~eni~~~l~~~~~~~~~~~~-----~v~~~l~~~--gL~~~~~r~~~~LSGGq~QRvalArAL~ 161 (355)
T 1z47_A 89 VGLVFQNYALFQHMTVYDNVSFGLREKRVPKDEMDA-----RVRELLRFM--RLESYANRFPHELSGGQQQRVALARALA 161 (355)
T ss_dssp EEEECGGGCCCTTSCHHHHHHHHHHHTTCCHHHHHH-----HHHHHHHHT--TCGGGTTSCGGGSCHHHHHHHHHHHHHT
T ss_pred EEEEecCcccCCCCCHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHHc--CChhHhcCCcccCCHHHHHHHHHHHHHH
Confidence 999999999986 599999998632 112222111 111223333 5555566677899999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhC--CCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChhhHhcCCCchh
Q 000984 539 KDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVEDPEGAY 615 (1198)
Q Consensus 539 ~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~~~~~ 615 (1198)
.+|++||||||||+||+.+.+.+.+.|+++.+ +.|+|+|||+++.+.. ||+|++|++|+|++.|+++++..++...|
T Consensus 162 ~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~l~~~p~~~~ 241 (355)
T 1z47_A 162 PRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHDQEEALEVADRVLVLHEGNVEQFGTPEEVYEKPGTLF 241 (355)
T ss_dssp TCCSEEEEESTTCCSSHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSCSSHH
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCccchH
Confidence 99999999999999999999999999988753 7899999999998765 99999999999999999999987654443
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=5.1e-42 Score=390.67 Aligned_cols=215 Identities=30% Similarity=0.513 Sum_probs=184.3
Q ss_pred EEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcceE
Q 000984 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIG 463 (1198)
Q Consensus 384 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~ 463 (1198)
|+++|++++|+ +. +|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.+. .|++|+
T Consensus 2 l~~~~l~~~y~---~~-~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~--~~r~ig 75 (348)
T 3d31_A 2 IEIESLSRKWK---NF-SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSP--EKHDIA 75 (348)
T ss_dssp EEEEEEEEECS---SC-EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCH--HHHTCE
T ss_pred EEEEEEEEEEC---CE-EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCEECCCCch--hhCcEE
Confidence 78999999995 24 9999999999999999999999999999999999999999999999999987654 367899
Q ss_pred EEcCCCCCCcc-cHHHHHhcCCC---CCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhhcc
Q 000984 464 LVSQEPVLFTG-SIKDNIAYGKD---DATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILK 539 (1198)
Q Consensus 464 ~v~Q~~~l~~~-ti~~Ni~~~~~---~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal~~ 539 (1198)
||+|++.+|.. ||+||+.|+.. ...++++.++++.. |++........+||||||||++|||||+.
T Consensus 76 ~v~Q~~~l~~~ltv~enl~~~~~~~~~~~~~~v~~~l~~~-----------~L~~~~~~~~~~LSgGq~QRvalAraL~~ 144 (348)
T 3d31_A 76 FVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDL-----------KIEHLLDRNPLTLSGGEQQRVALARALVT 144 (348)
T ss_dssp EECTTCCCCTTSCHHHHHHHHHHHHCCCCHHHHHHHHHHT-----------TCTTTTTSCGGGSCHHHHHHHHHHHHTTS
T ss_pred EEecCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHc-----------CCchHhcCChhhCCHHHHHHHHHHHHHHc
Confidence 99999999965 99999998631 11224444444443 44444556667899999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHhHHHHHHHHHHHhC--CCeEEEEecCcchhh-ccCEEEEEeCCEEEEecChhhHhcCCCchh
Q 000984 540 DPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKGTHSKLVEDPEGAY 615 (1198)
Q Consensus 540 ~~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~ 615 (1198)
+|++||||||||+||+.+.+.+.+.|+++.+ ++|+|+|||+++.+. .||+|++|++|++++.|+++++.+++...|
T Consensus 145 ~P~lLLLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~~~~~p~~~~ 223 (348)
T 3d31_A 145 NPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEIFEKPVEGR 223 (348)
T ss_dssp CCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHHHHHHHCSEEEEESSSCEEEEECHHHHHSSCCTTH
T ss_pred CCCEEEEECccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhCcccHH
Confidence 9999999999999999999999999988753 789999999999875 599999999999999999999987655444
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C | Back alignment and structure |
|---|
Probab=100.00 E-value=8.5e-42 Score=373.06 Aligned_cols=208 Identities=23% Similarity=0.345 Sum_probs=182.7
Q ss_pred cEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcce
Q 000984 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKI 462 (1198)
Q Consensus 383 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i 462 (1198)
.++++|++++ ++|+|+||++++||+++|+||||||||||+++|+|+++|+ |+|.++|.++.+.+...+|+++
T Consensus 4 ~l~~~~l~~~-------~vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~-G~i~~~g~~~~~~~~~~~~~~i 75 (249)
T 2qi9_C 4 VMQLQDVAES-------TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGK-GSIQFAGQPLEAWSATKLALHR 75 (249)
T ss_dssp EEEEEEEEET-------TTEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCE-EEEEETTEEGGGSCHHHHHHHE
T ss_pred EEEEEceEEE-------EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC-eEEEECCEECCcCCHHHHhceE
Confidence 4889999985 4899999999999999999999999999999999999999 9999999999888888889999
Q ss_pred EEEcCCCCCCc-ccHHHHHhcCCC-CCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhhccC
Q 000984 463 GLVSQEPVLFT-GSIKDNIAYGKD-DATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKD 540 (1198)
Q Consensus 463 ~~v~Q~~~l~~-~ti~~Ni~~~~~-~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal~~~ 540 (1198)
+|++|+|.+|. .|++||+.++.. ..+.+++.++++.. |++........+||||||||++|||||+++
T Consensus 76 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~-----------~l~~~~~~~~~~LSgGq~qrv~lAraL~~~ 144 (249)
T 2qi9_C 76 AYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGAL-----------ALDDKLGRSTNQLSGGEWQRVRLAAVVLQI 144 (249)
T ss_dssp EEECSCCCCCTTCBHHHHHHTTCSSTTCHHHHHHHHHHT-----------TCGGGTTSBGGGCCHHHHHHHHHHHHHHHH
T ss_pred EEECCCCccCCCCcHHHHHHHhhccCCcHHHHHHHHHHc-----------CChhHhcCChhhCCHHHHHHHHHHHHHHcC
Confidence 99999999886 499999998642 12344445444444 444455666789999999999999999999
Q ss_pred CC-------EEEEeCCCCCCCHHhHHHHHHHHHHHh-CCCeEEEEecCcchhh-ccCEEEEEeCCEEEEecChhhHhc
Q 000984 541 PR-------ILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKGTHSKLVE 609 (1198)
Q Consensus 541 ~~-------illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~ 609 (1198)
|+ +|||||||++||+.+.+.+.+.|+++. +++|+|++||+++.+. .||+|++|++|++++.|+++++.+
T Consensus 145 p~~~~~~~~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 222 (249)
T 2qi9_C 145 TPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALSQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVLT 222 (249)
T ss_dssp CTTTCTTCCEEEESSTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEEEHHHHSC
T ss_pred CCcCCCCCeEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 99 999999999999999999999998874 4789999999999984 599999999999999999999864
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-42 Score=393.27 Aligned_cols=223 Identities=29% Similarity=0.454 Sum_probs=185.7
Q ss_pred cEEEEeEEEEcCCCCCCc--cccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcC---HHH
Q 000984 383 DIELRDVYFSYPARPNEQ--IFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQ---LQW 457 (1198)
Q Consensus 383 ~i~~~~v~~~y~~~~~~~--~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~---~~~ 457 (1198)
.|+++|++++|++ .+ +|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.+ ...
T Consensus 3 ~l~i~~l~~~y~~---~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~~~~ 79 (353)
T 1oxx_K 3 RIIVKNVSKVFKK---GKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPP 79 (353)
T ss_dssp CEEEEEEEEEEGG---GTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCG
T ss_pred EEEEEeEEEEECC---EeeeeEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECcccccccCCh
Confidence 3899999999953 45 999999999999999999999999999999999999999999999999986521 223
Q ss_pred HhcceEEEcCCCCCCc-ccHHHHHhcCCCCC--CHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHH
Q 000984 458 IRKKIGLVSQEPVLFT-GSIKDNIAYGKDDA--TTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIA 534 (1198)
Q Consensus 458 ~r~~i~~v~Q~~~l~~-~ti~~Ni~~~~~~~--~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lA 534 (1198)
.+++|+||+|++.+|. .||+||+.|+.... ..++..+. +.+.++.+ |++........+||||||||++||
T Consensus 80 ~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~-----v~~~l~~~--~L~~~~~~~~~~LSGGq~QRvalA 152 (353)
T 1oxx_K 80 EDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKR-----VEEVAKIL--DIHHVLNHFPRELSGAQQQRVALA 152 (353)
T ss_dssp GGSCEEEEETTSCCCTTSCHHHHHHGGGTTSSCCHHHHHHH-----HHHHHHHT--TCGGGTTSCGGGSCHHHHHHHHHH
T ss_pred hhCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHH-----HHHHHHHc--CCchHhcCChhhCCHHHHHHHHHH
Confidence 4678999999999996 59999999975321 22222111 11223333 555555666779999999999999
Q ss_pred HhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhC--CCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChhhHhcCC
Q 000984 535 RAILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVEDP 611 (1198)
Q Consensus 535 Ral~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~ 611 (1198)
|||+.+|++||||||||+||+.+.+.+.+.|+++.+ ++|+|+|||+++.+.. ||+|++|++|+|++.|+++++..++
T Consensus 153 raL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~l~~~p 232 (353)
T 1oxx_K 153 RALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDLYDNP 232 (353)
T ss_dssp HHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSC
T ss_pred HHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCc
Confidence 999999999999999999999999999999988753 7899999999998764 9999999999999999999998775
Q ss_pred Cchh
Q 000984 612 EGAY 615 (1198)
Q Consensus 612 ~~~~ 615 (1198)
...|
T Consensus 233 ~~~~ 236 (353)
T 1oxx_K 233 VSIQ 236 (353)
T ss_dssp SSHH
T ss_pred ccHH
Confidence 5444
|
| >1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7.6e-42 Score=393.32 Aligned_cols=221 Identities=28% Similarity=0.490 Sum_probs=184.5
Q ss_pred cEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCC------cCHH
Q 000984 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKE------FQLQ 456 (1198)
Q Consensus 383 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~------~~~~ 456 (1198)
.|+++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+ .+..
T Consensus 3 ~l~~~~l~~~y~~---~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~~~~~~ 79 (372)
T 1g29_1 3 GVRLVDVWKVFGE---VTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPK 79 (372)
T ss_dssp EEEEEEEEEEETT---EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCGG
T ss_pred EEEEEeEEEEECC---EEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCCCCccEEEECCEECccccccccCCHh
Confidence 4899999999953 469999999999999999999999999999999999999999999999999865 4433
Q ss_pred HHhcceEEEcCCCCCCc-ccHHHHHhcCCC--CCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhH
Q 000984 457 WIRKKIGLVSQEPVLFT-GSIKDNIAYGKD--DATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAI 533 (1198)
Q Consensus 457 ~~r~~i~~v~Q~~~l~~-~ti~~Ni~~~~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~l 533 (1198)
+++|+||+|++.+|. .||+||+.|+.. ....++..+. +.+.++.+ |++........+||||||||++|
T Consensus 80 --~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~-----v~~~l~~~--~L~~~~~r~~~~LSGGq~QRval 150 (372)
T 1g29_1 80 --DRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQR-----VREVAELL--GLTELLNRKPRELSGGQRQRVAL 150 (372)
T ss_dssp --GSSEEEECSCCCCCTTSCHHHHHHHHHHHTTCCHHHHHHH-----HHHHHHHH--TCGGGTTCCGGGSCHHHHHHHHH
T ss_pred --HCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHH-----HHHHHHHC--CCchHhcCCcccCCHHHHHHHHH
Confidence 578999999999985 699999998632 1222222111 11122222 55555666778999999999999
Q ss_pred HHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhC--CCeEEEEecCcchhh-ccCEEEEEeCCEEEEecChhhHhcC
Q 000984 534 ARAILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKGTHSKLVED 610 (1198)
Q Consensus 534 ARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~~ 610 (1198)
||||+.+|++||||||||+||+.+.+.+.+.|+++.+ +.|+|+|||+++.+. .||+|++|++|+|++.|+++++..+
T Consensus 151 ArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~l~~~ 230 (372)
T 1g29_1 151 GRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEVYDK 230 (372)
T ss_dssp HHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHS
T ss_pred HHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCCEEEEEeCCEEEEeCCHHHHHhC
Confidence 9999999999999999999999999999999988753 789999999999875 5999999999999999999999887
Q ss_pred CCchh
Q 000984 611 PEGAY 615 (1198)
Q Consensus 611 ~~~~~ 615 (1198)
+...|
T Consensus 231 p~~~~ 235 (372)
T 1g29_1 231 PANTF 235 (372)
T ss_dssp CSBHH
T ss_pred cccHH
Confidence 55444
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-42 Score=423.28 Aligned_cols=197 Identities=21% Similarity=0.345 Sum_probs=155.3
Q ss_pred cEEE--------EeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeE---------EE
Q 000984 383 DIEL--------RDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV---------LI 445 (1198)
Q Consensus 383 ~i~~--------~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i---------~i 445 (1198)
.|++ +|++++|+.. ..+|+|+| ++++||+++|+||||||||||+++|.|+++|++|++ .+
T Consensus 83 ~i~i~~l~~~~~~~ls~~yg~~--~~~l~~vs-~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~p~~G~~~~~~~~~~~~~ 159 (607)
T 3bk7_A 83 AISIVNLPEQLDEDCVHRYGVN--AFVLYRLP-IVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAF 159 (607)
T ss_dssp CCEEEEECTTGGGSEEEECSTT--CCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHTTSSCCCTTTTCCCHHHHHHHT
T ss_pred eEEEecCCccccCCeEEEECCC--CeeeCCCC-CCCCCCEEEEECCCCChHHHHHHHHhCCCCCCCCccccccchhhhee
Confidence 3788 8999999632 25899999 999999999999999999999999999999999996 35
Q ss_pred CCeecCCcCHHH--HhcceEEEcCCC----CCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCC
Q 000984 446 DGINLKEFQLQW--IRKKIGLVSQEP----VLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEH 519 (1198)
Q Consensus 446 ~g~~~~~~~~~~--~r~~i~~v~Q~~----~l~~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~ 519 (1198)
+|.++.+..... .+..+++++|.. .++.+|++||+..... .+++.++++.. |++......
T Consensus 160 ~G~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~~~~---~~~~~~~L~~l-----------gL~~~~~~~ 225 (607)
T 3bk7_A 160 RGNELQNYFERLKNGEIRPVVKPQYVDLLPKAVKGKVRELLKKVDE---VGKFEEVVKEL-----------ELENVLDRE 225 (607)
T ss_dssp TTSTHHHHHHHHHHTSCCCEEECSCGGGGGGTCCSBHHHHHHHTCC---SSCHHHHHHHT-----------TCTTGGGSB
T ss_pred CCEehhhhhhhhhhhhcceEEeechhhhchhhccccHHHHhhhhHH---HHHHHHHHHHc-----------CCCchhCCC
Confidence 665543321111 134688888874 3455699999975221 22333444333 444445555
Q ss_pred CCCCChHHHHHHhHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhC-CCeEEEEecCcchhhc-cCEEEEEeCC
Q 000984 520 GTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMV-NRTTVIVAHRLSTVRN-ADMIAVIHRG 596 (1198)
Q Consensus 520 g~~lSgGqkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~-~~t~i~itH~~~~~~~-~d~i~~l~~G 596 (1198)
..+||||||||++|||||+++|++||||||||+||+.+...+.+.|+++.+ ++|+|+|||+++.+.. ||+|++|+++
T Consensus 226 ~~~LSGGekQRvaIAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvIivsHdl~~~~~~adri~vl~~~ 304 (607)
T 3bk7_A 226 LHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHDLAVLDYLSDVIHVVYGE 304 (607)
T ss_dssp GGGCCHHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEESC
T ss_pred hhhCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEecChHHHHhhCCEEEEECCC
Confidence 678999999999999999999999999999999999999999999988753 7999999999998865 9999999753
|
| >2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-41 Score=373.60 Aligned_cols=214 Identities=28% Similarity=0.444 Sum_probs=171.4
Q ss_pred cEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcc--CCCCCCeEEECCeecCCcCHHHH-h
Q 000984 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERF--YDPQAGEVLIDGINLKEFQLQWI-R 459 (1198)
Q Consensus 383 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~--~~~~~G~i~i~g~~~~~~~~~~~-r 459 (1198)
.|+++|++++|+. .++|+|+||+|++||+++|+||||||||||+++|+|+ ++|++|+|.++|.++.+.+.... |
T Consensus 3 ~l~~~~l~~~y~~---~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~~~~~~~~~~~~ 79 (250)
T 2d2e_A 3 QLEIRDLWASIDG---ETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSPDERAR 79 (250)
T ss_dssp EEEEEEEEEEETT---EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEETTEECTTSCHHHHHH
T ss_pred eEEEEeEEEEECC---EEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEECCCCCHHHHHh
Confidence 3899999999953 4699999999999999999999999999999999998 88999999999999988876655 4
Q ss_pred cceEEEcCCCCCCcc-cHHHHHhcCCC---C--CCHHHHHHHHHHhcHHHHHHhCCCCcc-chhcCCCCC-CChHHHHHH
Q 000984 460 KKIGLVSQEPVLFTG-SIKDNIAYGKD---D--ATTEEIRVATELANAAKFIDKLPQGID-TLVGEHGTQ-LSGGQKQRI 531 (1198)
Q Consensus 460 ~~i~~v~Q~~~l~~~-ti~~Ni~~~~~---~--~~~~~~~~~~~~~~~~~~i~~l~~g~~-t~v~~~g~~-lSgGqkqri 531 (1198)
..++|++|+|.+|.+ |++||+.++.. . ...++..+ .+.+.++.+ |++ ........+ ||||||||+
T Consensus 80 ~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~--gl~~~~~~~~~~~~LSgGqkQrv 152 (250)
T 2d2e_A 80 KGLFLAFQYPVEVPGVTIANFLRLALQAKLGREVGVAEFWT-----KVKKALELL--DWDESYLSRYLNEGFSGGEKKRN 152 (250)
T ss_dssp TTBCCCCCCCC-CCSCBHHHHHHHHHHHHHTSCCCHHHHHH-----HHHHHHHHH--TCCGGGGGSBTTCC----HHHHH
T ss_pred CcEEEeccCCccccCCCHHHHHHHHHHhhccccCCHHHHHH-----HHHHHHHHc--CCChhHhcCCcccCCCHHHHHHH
Confidence 569999999998864 99999986421 0 11111111 111222322 453 233444456 999999999
Q ss_pred hHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh-CCCeEEEEecCcchhhc--cCEEEEEeCCEEEEecChhh
Q 000984 532 AIARAILKDPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRN--ADMIAVIHRGKIVEKGTHSK 606 (1198)
Q Consensus 532 ~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~~--~d~i~~l~~G~i~~~g~~~~ 606 (1198)
+|||||+++|++||||||||+||+.+.+.+.+.|+++. +++|+|+|||+++.+.. ||+|++|++|++++.|+++.
T Consensus 153 ~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~~~d~v~~l~~G~i~~~g~~~~ 230 (250)
T 2d2e_A 153 EILQLLVLEPTYAVLDETDSGLDIDALKVVARGVNAMRGPNFGALVITHYQRILNYIQPDKVHVMMDGRVVATGGPEL 230 (250)
T ss_dssp HHHHHHHHCCSEEEEECGGGTTCHHHHHHHHHHHHHHCSTTCEEEEECSSSGGGGTSCCSEEEEEETTEEEEEESHHH
T ss_pred HHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhcCCEEEEEECCEEEEEeCHHH
Confidence 99999999999999999999999999999999998875 47899999999999876 59999999999999999873
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-41 Score=372.33 Aligned_cols=207 Identities=17% Similarity=0.313 Sum_probs=178.2
Q ss_pred EEEEeEEEEcCCC-CCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcce
Q 000984 384 IELRDVYFSYPAR-PNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKI 462 (1198)
Q Consensus 384 i~~~~v~~~y~~~-~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i 462 (1198)
|+++|++++|+.. ..+++|+|+||+++ ||+++|+||||||||||+++|+|++ |++|+|.++|.++.+. .. |+++
T Consensus 2 l~~~~l~~~y~~~~~~~~il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~~G~I~~~g~~~~~~--~~-~~~i 76 (263)
T 2pjz_A 2 IQLKNVGITLSGKGYERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-PYSGNIFINGMEVRKI--RN-YIRY 76 (263)
T ss_dssp EEEEEEEEEEEEETTEEEEEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS-CCEEEEEETTEEGGGC--SC-CTTE
T ss_pred EEEEEEEEEeCCCCccceeEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC-CCCcEEEECCEECcch--HH-hhhe
Confidence 7899999999631 01469999999999 9999999999999999999999999 9999999999998754 23 7789
Q ss_pred E-EEcCCCCCCcccHHHHHhcCCC--CCCHHHHHHHHHHhcHHHHHHhCCCCcc-chhcCCCCCCChHHHHHHhHHHhhc
Q 000984 463 G-LVSQEPVLFTGSIKDNIAYGKD--DATTEEIRVATELANAAKFIDKLPQGID-TLVGEHGTQLSGGQKQRIAIARAIL 538 (1198)
Q Consensus 463 ~-~v~Q~~~l~~~ti~~Ni~~~~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~-t~v~~~g~~lSgGqkqri~lARal~ 538 (1198)
+ |+||+|.+ ..|++||+.++.. ...++++.+++ +.+ |++ ...+....+||||||||++|||||+
T Consensus 77 ~~~v~Q~~~l-~~tv~enl~~~~~~~~~~~~~~~~~l---------~~~--gl~~~~~~~~~~~LSgGqkqRv~lAraL~ 144 (263)
T 2pjz_A 77 STNLPEAYEI-GVTVNDIVYLYEELKGLDRDLFLEML---------KAL--KLGEEILRRKLYKLSAGQSVLVRTSLALA 144 (263)
T ss_dssp EECCGGGSCT-TSBHHHHHHHHHHHTCCCHHHHHHHH---------HHT--TCCGGGGGSBGGGSCHHHHHHHHHHHHHH
T ss_pred EEEeCCCCcc-CCcHHHHHHHhhhhcchHHHHHHHHH---------HHc--CCChhHhcCChhhCCHHHHHHHHHHHHHH
Confidence 9 99999998 9999999987532 22344444433 333 565 6667778899999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhCCCeEEEEecCcchhh-ccC-EEEEEeCCEEEEecChhhHhc
Q 000984 539 KDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVR-NAD-MIAVIHRGKIVEKGTHSKLVE 609 (1198)
Q Consensus 539 ~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~-~~d-~i~~l~~G~i~~~g~~~~l~~ 609 (1198)
++|++|||||||++||+.+.+.+.+.++++.+ |+|++||+++.+. .|| +|++|++|++++.|+++++.+
T Consensus 145 ~~p~lllLDEPts~LD~~~~~~l~~~L~~~~~--tviivtHd~~~~~~~~d~~i~~l~~G~i~~~g~~~~l~~ 215 (263)
T 2pjz_A 145 SQPEIVGLDEPFENVDAARRHVISRYIKEYGK--EGILVTHELDMLNLYKEYKAYFLVGNRLQGPISVSELLE 215 (263)
T ss_dssp TCCSEEEEECTTTTCCHHHHHHHHHHHHHSCS--EEEEEESCGGGGGGCTTSEEEEEETTEEEEEEEHHHHHT
T ss_pred hCCCEEEEECCccccCHHHHHHHHHHHHHhcC--cEEEEEcCHHHHHHhcCceEEEEECCEEEEecCHHHHHh
Confidence 99999999999999999999999999988754 9999999999875 599 999999999999999999864
|
| >2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-40 Score=367.67 Aligned_cols=216 Identities=25% Similarity=0.364 Sum_probs=178.0
Q ss_pred cEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcc--CCCCCCeEEECCeecCCcCHHHH-h
Q 000984 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERF--YDPQAGEVLIDGINLKEFQLQWI-R 459 (1198)
Q Consensus 383 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~--~~~~~G~i~i~g~~~~~~~~~~~-r 459 (1198)
.|+++|++++|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+ ++|++|+|.++|.++.+.+.... |
T Consensus 20 ~l~~~~l~~~y~---~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~ 96 (267)
T 2zu0_C 20 MLSIKDLHVSVE---DKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPEDRAG 96 (267)
T ss_dssp CEEEEEEEEEET---TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEEGGGSCHHHHHH
T ss_pred eEEEEeEEEEEC---CEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCcCCHHHHhh
Confidence 599999999995 25699999999999999999999999999999999999 57899999999999988776655 4
Q ss_pred cceEEEcCCCCCCcc-cHHHHHhcCC---------CCCCHHHHHHHHHHhcHHHHHHhCCCCccchh-cCCCC-CCChHH
Q 000984 460 KKIGLVSQEPVLFTG-SIKDNIAYGK---------DDATTEEIRVATELANAAKFIDKLPQGIDTLV-GEHGT-QLSGGQ 527 (1198)
Q Consensus 460 ~~i~~v~Q~~~l~~~-ti~~Ni~~~~---------~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v-~~~g~-~lSgGq 527 (1198)
..++|++|+|.+|.+ |+++|+.++. +..+.++..+ .+.+.++.+ |+++.. ..... +|||||
T Consensus 97 ~~i~~v~Q~~~l~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~--gl~~~~~~~~~~~~LSgGq 169 (267)
T 2zu0_C 97 EGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQD-----LMEEKIALL--KMPEDLLTRSVNVGFSGGE 169 (267)
T ss_dssp HTEEEECSSCCCCTTCBHHHHHHHHHHHHHHGGGCCCCCHHHHHH-----HHHHHHHHT--TCCTTTTTSBTTTTCCHHH
T ss_pred CCEEEEccCccccccccHHHHHHHHHHhhhhhhccccCCHHHHHH-----HHHHHHHHc--CCChhHhcCCcccCCCHHH
Confidence 569999999998865 8999987531 1112222111 122334444 565433 33333 599999
Q ss_pred HHHHhHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh-CCCeEEEEecCcchhhc--cCEEEEEeCCEEEEecCh
Q 000984 528 KQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRN--ADMIAVIHRGKIVEKGTH 604 (1198)
Q Consensus 528 kqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~~--~d~i~~l~~G~i~~~g~~ 604 (1198)
|||++|||||+++|++||||||||+||+.+.+.+.+.|+++. +++|+|++||+++.+.. ||+|++|++|++++.|++
T Consensus 170 ~QRv~iAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~~~~~~~d~v~~l~~G~i~~~g~~ 249 (267)
T 2zu0_C 170 KKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSGDF 249 (267)
T ss_dssp HHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHTTCCSSCEEEEECSSGGGGGTSCCSEEEEEETTEEEEEECT
T ss_pred HHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeeCHHHHHhhcCCEEEEEECCEEEEEcCH
Confidence 999999999999999999999999999999999999998874 47899999999998875 899999999999999998
Q ss_pred hhHh
Q 000984 605 SKLV 608 (1198)
Q Consensus 605 ~~l~ 608 (1198)
+++.
T Consensus 250 ~~~~ 253 (267)
T 2zu0_C 250 TLVK 253 (267)
T ss_dssp THHH
T ss_pred HHHh
Confidence 8763
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-41 Score=410.76 Aligned_cols=195 Identities=22% Similarity=0.354 Sum_probs=150.7
Q ss_pred EE-EeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeE---------EECCeecCCcC
Q 000984 385 EL-RDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV---------LIDGINLKEFQ 454 (1198)
Q Consensus 385 ~~-~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i---------~i~g~~~~~~~ 454 (1198)
++ +|++++|+.. ..+|+|+| +|++||+++|+||||||||||+++|.|+++|++|++ .++|.++....
T Consensus 22 ~~~~~ls~~yg~~--~~~l~~vs-~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~p~~G~~~~~~~~~~~~~~g~~~~~~~ 98 (538)
T 1yqt_A 22 QLEEDCVHRYGVN--AFVLYRLP-VVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNYF 98 (538)
T ss_dssp --CCCEEEECSTT--CCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSHHHHHHHTTTSTHHHHH
T ss_pred hHhcCcEEEECCc--cccccCcC-cCCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCccCcchhhhHHhhCCccHHHHH
Confidence 44 5899999642 25899999 999999999999999999999999999999999995 35665443221
Q ss_pred HHH--HhcceEEEcCCCCC----CcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHH
Q 000984 455 LQW--IRKKIGLVSQEPVL----FTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQK 528 (1198)
Q Consensus 455 ~~~--~r~~i~~v~Q~~~l----~~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqk 528 (1198)
... .+..+++++|+... +.+|+++|+..... .+++.++++.. |++........+||||||
T Consensus 99 ~~~~~~~~~~~~~~q~~~~~~~~~~~~v~e~~~~~~~---~~~~~~~l~~l-----------gl~~~~~~~~~~LSgGek 164 (538)
T 1yqt_A 99 EKLKNGEIRPVVKPQYVDLIPKAVKGKVIELLKKADE---TGKLEEVVKAL-----------ELENVLEREIQHLSGGEL 164 (538)
T ss_dssp HHHHTTSCCCEEECSCGGGSGGGCCSBHHHHHHHHCS---SSCHHHHHHHT-----------TCTTTTTSBGGGCCHHHH
T ss_pred HHHHHHhhhhhhhhhhhhhcchhhhccHHHHHhhhhH---HHHHHHHHHHc-----------CCChhhhCChhhCCHHHH
Confidence 111 12468899987543 34699999864211 12333344333 444444555668999999
Q ss_pred HHHhHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh-CCCeEEEEecCcchhhc-cCEEEEEeCC
Q 000984 529 QRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRN-ADMIAVIHRG 596 (1198)
Q Consensus 529 qri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G 596 (1198)
||++|||||+.+|++|||||||++||+.+...+.+.|+++. +++|+|+|||+++.+.. ||+|++|++|
T Consensus 165 QRv~iAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvi~vsHd~~~~~~~~dri~vl~~~ 234 (538)
T 1yqt_A 165 QRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVLVVEHDLAVLDYLSDIIHVVYGE 234 (538)
T ss_dssp HHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEEE
T ss_pred HHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEcCc
Confidence 99999999999999999999999999999999999998764 47899999999998875 9999999753
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-40 Score=366.16 Aligned_cols=200 Identities=29% Similarity=0.423 Sum_probs=170.9
Q ss_pred cEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcce
Q 000984 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKI 462 (1198)
Q Consensus 383 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i 462 (1198)
.|+++|++++|+. +.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+ ++++
T Consensus 4 ~l~i~~l~~~y~~--~~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~-------------~~~i 68 (253)
T 2nq2_C 4 ALSVENLGFYYQA--ENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIEV-------------YQSI 68 (253)
T ss_dssp EEEEEEEEEEETT--TTEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSCCSEEEEEE-------------CSCE
T ss_pred eEEEeeEEEEeCC--CCeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEE-------------eccE
Confidence 4899999999962 246999999999999999999999999999999999999999999982 4589
Q ss_pred EEEcCCCCCC-cccHHHHHhcCCCC-------CCH---HHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHH
Q 000984 463 GLVSQEPVLF-TGSIKDNIAYGKDD-------ATT---EEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRI 531 (1198)
Q Consensus 463 ~~v~Q~~~l~-~~ti~~Ni~~~~~~-------~~~---~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri 531 (1198)
+|+||+|.+| ..|++||+.++... ... +++.+++ +.+ |++........+||||||||+
T Consensus 69 ~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l---------~~~--~l~~~~~~~~~~LSgGq~qrv 137 (253)
T 2nq2_C 69 GFVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQAL---------DYL--NLTHLAKREFTSLSGGQRQLI 137 (253)
T ss_dssp EEECSCCCCSSCCBHHHHHHGGGGGGSCTTCCCCHHHHHHHHHHH---------HHT--TCGGGTTSBGGGSCHHHHHHH
T ss_pred EEEcCCCccCCCCCHHHHHHHhhhhhcccccCCCHHHHHHHHHHH---------HHc--CChHHhcCChhhCCHHHHHHH
Confidence 9999999887 67999999986321 122 2223333 333 555555667789999999999
Q ss_pred hHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhC--CCeEEEEecCcchhh-ccCEEEEEeCCEEEEecChhhHh
Q 000984 532 AIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKGTHSKLV 608 (1198)
Q Consensus 532 ~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~ 608 (1198)
+|||||+++|++||||||||+||+.+.+.+.+.|+++.+ ++|+|++||+++.+. .||+|++|++|+ ++.|+++++.
T Consensus 138 ~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~-~~~g~~~~~~ 216 (253)
T 2nq2_C 138 LIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPNQVVAIANKTLLLNKQN-FKFGETRNIL 216 (253)
T ss_dssp HHHHHHHTTCSEEEESSSSTTSCHHHHHHHHHHHHHHHHTSCCEEEEEESCHHHHHHHCSEEEEEETTE-EEEEEHHHHC
T ss_pred HHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCCe-EecCCHHHHh
Confidence 999999999999999999999999999999999988754 789999999999885 599999999999 9999999986
Q ss_pred c
Q 000984 609 E 609 (1198)
Q Consensus 609 ~ 609 (1198)
+
T Consensus 217 ~ 217 (253)
T 2nq2_C 217 T 217 (253)
T ss_dssp C
T ss_pred C
Confidence 4
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-40 Score=352.27 Aligned_cols=194 Identities=22% Similarity=0.395 Sum_probs=163.9
Q ss_pred cEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcce
Q 000984 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKI 462 (1198)
Q Consensus 383 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i 462 (1198)
.|+++|++++|+ + ++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++. ..|+++
T Consensus 10 ~l~~~~ls~~y~---~-~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~-----~~~~~i 80 (214)
T 1sgw_A 10 KLEIRDLSVGYD---K-PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPIT-----KVKGKI 80 (214)
T ss_dssp EEEEEEEEEESS---S-EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGG-----GGGGGE
T ss_pred eEEEEEEEEEeC---C-eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEhh-----hhcCcE
Confidence 599999999995 2 6999999999999999999999999999999999999999999999999875 257889
Q ss_pred EEEcCCCCCCcc-cHHHHHhcCCC----CCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhh
Q 000984 463 GLVSQEPVLFTG-SIKDNIAYGKD----DATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAI 537 (1198)
Q Consensus 463 ~~v~Q~~~l~~~-ti~~Ni~~~~~----~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal 537 (1198)
+|+||+|.+|.+ |++||+.++.. ....+++.++++ .+ |++.. ++.+.+||||||||++|||||
T Consensus 81 ~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~---------~~--gl~~~-~~~~~~LSgGqkqrv~laraL 148 (214)
T 1sgw_A 81 FFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALE---------SV--EVLDL-KKKLGELSQGTIRRVQLASTL 148 (214)
T ss_dssp EEECSSCCCCTTSBHHHHHHHHHHHTTCCCCHHHHHHHHH---------HT--TCCCT-TSBGGGSCHHHHHHHHHHHHT
T ss_pred EEEeCCCcCCCCCCHHHHHHHHHHhcCCchHHHHHHHHHH---------Hc--CCCcC-CCChhhCCHHHHHHHHHHHHH
Confidence 999999998875 99999987521 112334444333 33 56555 677889999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh-CCCeEEEEecCcchhhc-cCEEEEEeCCEE
Q 000984 538 LKDPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRN-ADMIAVIHRGKI 598 (1198)
Q Consensus 538 ~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i 598 (1198)
+++|++|||||||++||+.+.+.+.+.++++. +++|+|++||+++.+.. ||+|+ +.+|+|
T Consensus 149 ~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~~~d~v~-~~~~~~ 210 (214)
T 1sgw_A 149 LVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREELSYCDVNENLH-KYSTKI 210 (214)
T ss_dssp TSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESSCCTTSSEEEEGG-GGBC--
T ss_pred HhCCCEEEEECCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEE-EeCCcc
Confidence 99999999999999999999999999998875 47899999999999877 56655 556666
|
| >3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-40 Score=416.73 Aligned_cols=202 Identities=25% Similarity=0.400 Sum_probs=135.2
Q ss_pred CccccceeEEEeCCCEEEEEcCCCCcHHHHH---------------------HHHhccCCCC-------CCeEEECCeec
Q 000984 399 EQIFSGFSISISSGTTAALVGQSGSGKSTVI---------------------SLIERFYDPQ-------AGEVLIDGINL 450 (1198)
Q Consensus 399 ~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~---------------------~~l~g~~~~~-------~G~i~i~g~~~ 450 (1198)
..+|+||||+|++||+++|+||||||||||+ +.+.|+..|+ .|.|.++|.+.
T Consensus 31 ~~~L~~vsl~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~~~~i~~~~~~i~~~~~~~ 110 (670)
T 3ux8_A 31 AHNLKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPDVDAIEGLSPAISIDQKTT 110 (670)
T ss_dssp STTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC--------------CCCSEEESCCCEEEESSCC-
T ss_pred ccceeccEEEECCCCEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhcccccCCccceeccccceEecCchh
Confidence 4589999999999999999999999999998 8888888888 45566666554
Q ss_pred CCcCHHHHhcceEEEcCCCCCC--------------------cccHHHHHhcCCCC-CCH--HH-----HHHHHHHhcHH
Q 000984 451 KEFQLQWIRKKIGLVSQEPVLF--------------------TGSIKDNIAYGKDD-ATT--EE-----IRVATELANAA 502 (1198)
Q Consensus 451 ~~~~~~~~r~~i~~v~Q~~~l~--------------------~~ti~~Ni~~~~~~-~~~--~~-----~~~~~~~~~~~ 502 (1198)
.. ..+..+++++|.+.++ ..|++||+.+.... ... .+ ..++.+..
T Consensus 111 ~~----~~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 183 (670)
T 3ux8_A 111 SR----NPRSTVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELTEKEAQIARLILREIRDRL--- 183 (670)
T ss_dssp --------CCBHHHHTTCC-------------------------CC--------------------------CHHHH---
T ss_pred hc----cchhceeeeechhhhHHHHHhhhcccccccccccccCCcHHHHHHHhhccccchhhhHHHHHHHHHHHHHH---
Confidence 32 2244566776655332 45899999874211 011 11 11111111
Q ss_pred HHHHhCCCCccch-hcCCCCCCChHHHHHHhHHHhhccCCC--EEEEeCCCCCCCHHhHHHHHHHHHHHh-CCCeEEEEe
Q 000984 503 KFIDKLPQGIDTL-VGEHGTQLSGGQKQRIAIARAILKDPR--ILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVA 578 (1198)
Q Consensus 503 ~~i~~l~~g~~t~-v~~~g~~lSgGqkqri~lARal~~~~~--illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~it 578 (1198)
+.++.+ |++.. ......+||||||||++|||||+.+|+ +|||||||++||+.+...+.+.|+++. +++|+|+||
T Consensus 184 ~~l~~~--gL~~~~~~~~~~~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~g~tvi~vt 261 (670)
T 3ux8_A 184 GFLQNV--GLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVE 261 (670)
T ss_dssp HHHHHT--TCTTCCTTCBGGGSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHHTTCEEEEEC
T ss_pred HHHHHc--CCchhhhcCCcccCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHHHHHHHHHcCCEEEEEe
Confidence 123333 44432 345567899999999999999999998 999999999999999999999998764 478999999
Q ss_pred cCcchhhccCEEEEE------eCCEEEEecChhhHhc
Q 000984 579 HRLSTVRNADMIAVI------HRGKIVEKGTHSKLVE 609 (1198)
Q Consensus 579 H~~~~~~~~d~i~~l------~~G~i~~~g~~~~l~~ 609 (1198)
|+++.+..||+|++| ++|++++.|+++++.+
T Consensus 262 Hd~~~~~~~d~ii~l~~g~~~~~G~i~~~g~~~~~~~ 298 (670)
T 3ux8_A 262 HDEDTMLAADYLIDIGPGAGIHGGEVVAAGTPEEVMN 298 (670)
T ss_dssp CCHHHHHHCSEEEEECSSSGGGCCSEEEEECHHHHHT
T ss_pred CCHHHHhhCCEEEEecccccccCCEEEEecCHHHHhc
Confidence 999988889999999 8899999998877653
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-40 Score=397.47 Aligned_cols=191 Identities=21% Similarity=0.388 Sum_probs=147.0
Q ss_pred eEEEEcCCCCCCccccceeEEEe-CCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeE-----------EECCeecCCcCH
Q 000984 388 DVYFSYPARPNEQIFSGFSISIS-SGTTAALVGQSGSGKSTVISLIERFYDPQAGEV-----------LIDGINLKEFQL 455 (1198)
Q Consensus 388 ~v~~~y~~~~~~~~l~~i~l~i~-~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i-----------~i~g~~~~~~~~ 455 (1198)
+++.+|+.+ -++...|.++ +||++||+||||||||||+++|+|++.|++|+| .++|.++..+..
T Consensus 4 ~~~~~~~~~----~f~l~~l~~~~~Gei~gLiGpNGaGKSTLlkiL~Gl~~p~~G~i~~~~~~~~~~~~~~g~~i~~~~~ 79 (538)
T 3ozx_A 4 EVIHRYKVN----GFKLFGLPTPKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKDEVLKRFRGKEIYNYFK 79 (538)
T ss_dssp CEEEESSTT----SCEEECCCCCCTTEEEEEECCTTSSHHHHHHHHTTSSCCCTTCTTSCCCHHHHHHHHTTSTTHHHHH
T ss_pred CCceecCCC----ceeecCCCCCCCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCccccccchhhHHhhcCCeeHHHHHH
Confidence 567889532 3444455554 899999999999999999999999999999998 567766543221
Q ss_pred HHH------hcceEEEcCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHH
Q 000984 456 QWI------RKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQ 529 (1198)
Q Consensus 456 ~~~------r~~i~~v~Q~~~l~~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkq 529 (1198)
... ...+.+++|.|.++.+|+++++..... .++..++++.. |++........+|||||||
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~---~~~~~~~l~~l-----------~l~~~~~~~~~~LSgGe~Q 145 (538)
T 3ozx_A 80 ELYSNELKIVHKIQYVEYASKFLKGTVNEILTKIDE---RGKKDEVKELL-----------NMTNLWNKDANILSGGGLQ 145 (538)
T ss_dssp HHHTTCCCEEEECSCTTGGGTTCCSBHHHHHHHHCC---SSCHHHHHHHT-----------TCGGGTTSBGGGCCHHHHH
T ss_pred HHhhcccchhhccchhhhhhhhccCcHHHHhhcchh---HHHHHHHHHHc-----------CCchhhcCChhhCCHHHHH
Confidence 111 223556666677788899998863221 22333444443 3333344555689999999
Q ss_pred HHhHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhCCCeEEEEecCcchhhc-cCEEEEEeCC
Q 000984 530 RIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRN-ADMIAVIHRG 596 (1198)
Q Consensus 530 ri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~-~d~i~~l~~G 596 (1198)
|++|||||+++|++||||||||+||+.+...+.+.|+++.+++|+|+|||+++.+.. ||+|++|++|
T Consensus 146 rv~iA~aL~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~g~tii~vsHdl~~~~~~~d~i~vl~~~ 213 (538)
T 3ozx_A 146 RLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRELLKNKYVIVVDHDLIVLDYLTDLIHIIYGE 213 (538)
T ss_dssp HHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHCTTSEEEEECSCHHHHHHHCSEEEEEEEE
T ss_pred HHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHhCCCEEEEEEeChHHHHhhCCEEEEecCC
Confidence 999999999999999999999999999999999999998778999999999998875 9999999764
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-37 Score=379.52 Aligned_cols=194 Identities=20% Similarity=0.359 Sum_probs=144.7
Q ss_pred eEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeE-----------EECCeecCCcCHH
Q 000984 388 DVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV-----------LIDGINLKEFQLQ 456 (1198)
Q Consensus 388 ~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i-----------~i~g~~~~~~~~~ 456 (1198)
|++++|+.. ...|++++ .+++||+++|+||||||||||+++|.|+++|++|+| .++|.++..+...
T Consensus 82 ~~~~~Y~~~--~~~l~~l~-~~~~Gei~~LvGpNGaGKSTLLkiL~Gll~P~~G~i~~~~~~~~~~~~~~g~~~~~~~~~ 158 (608)
T 3j16_B 82 HVTHRYSAN--SFKLHRLP-TPRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEIIKYFRGSELQNYFTK 158 (608)
T ss_dssp TEEEECSTT--SCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSSCHHHHHHHTTTSTHHHHHHH
T ss_pred CeEEEECCC--ceeecCCC-CCCCCCEEEEECCCCChHHHHHHHHhcCCCCCCceEecccchhhhhheecChhhhhhhhH
Confidence 568899643 35778777 689999999999999999999999999999999998 2334333222222
Q ss_pred HHhcceE--EEcCCCC----CCc---ccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHH
Q 000984 457 WIRKKIG--LVSQEPV----LFT---GSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQ 527 (1198)
Q Consensus 457 ~~r~~i~--~v~Q~~~----l~~---~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGq 527 (1198)
.++..+. +.+|... .+. .++.+++.... ....+++.++++.. |++........+|||||
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~-~~~~~~~~~~l~~~-----------gl~~~~~~~~~~LSgGe 226 (608)
T 3j16_B 159 MLEDDIKAIIKPQYVDNIPRAIKGPVQKVGELLKLRM-EKSPEDVKRYIKIL-----------QLENVLKRDIEKLSGGE 226 (608)
T ss_dssp HHHTSCCCEEECCCTTTHHHHCSSSSSHHHHHHHHHC-CSCHHHHHHHHHHH-----------TCTGGGGSCTTTCCHHH
T ss_pred HHHHhhhhhhchhhhhhhhhhhcchhhHHHHHHhhhh-hhHHHHHHHHHHHc-----------CCcchhCCChHHCCHHH
Confidence 2333332 3333221 111 26677665432 22345555544443 45555667778999999
Q ss_pred HHHHhHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhC-CCeEEEEecCcchhhc-cCEEEEEeCC
Q 000984 528 KQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMV-NRTTVIVAHRLSTVRN-ADMIAVIHRG 596 (1198)
Q Consensus 528 kqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~-~~t~i~itH~~~~~~~-~d~i~~l~~G 596 (1198)
|||++|||||+++|++||||||||+||+.+...+.+.|+++.+ ++|+|+|||+++.+.. ||+|++|++|
T Consensus 227 ~Qrv~iAraL~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHdl~~~~~~~drv~vl~~~ 297 (608)
T 3j16_B 227 LQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYVICVEHDLSVLDYLSDFVCIIYGV 297 (608)
T ss_dssp HHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHGGGTTTCEEEEECSCHHHHHHHCSEEEEEESC
T ss_pred HHHHHHHHHHHhCCCEEEEECcccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCC
Confidence 9999999999999999999999999999999999999988754 7899999999999876 9999999865
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.8e-34 Score=318.96 Aligned_cols=170 Identities=34% Similarity=0.568 Sum_probs=147.4
Q ss_pred hhHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCcccCCcccEEEeeeeEECCCCCCccccccceEEeeCCCEEEEEcCCCC
Q 000984 1003 SSDSNKAKSAAASIFAIIDRESKIDPSDESGTILEDVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGS 1082 (1198)
Q Consensus 1003 ~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~~~~~~G~I~f~nVsf~Y~~~~~~~vL~~is~~I~~GekvaIVG~SGS 1082 (1198)
+..++.+.++++|++++++.+++...... ..+.+...|.|+|+||+|+|++ +.+||+||||+|++||++||||||||
T Consensus 15 ~~~~~~~~~~~~ri~~~l~~~~~~~~~~~-~~~~~~~~~~i~~~~vs~~y~~--~~~vL~~isl~i~~Ge~vaivG~sGs 91 (306)
T 3nh6_A 15 VPRGSHMFIDMENMFDLLKEETEVKDLPG-AGPLRFQKGRIEFENVHFSYAD--GRETLQDVSFTVMPGQTLALVGPSGA 91 (306)
T ss_dssp ----CCTTCCHHHHHHHHHHHHSCCCCTT-CBCCCCSSCCEEEEEEEEESST--TCEEEEEEEEEECTTCEEEEESSSCH
T ss_pred chhHHHHHHHHHHHHHHHhCCcccccccc-ccccCCCCCeEEEEEEEEEcCC--CCceeeeeeEEEcCCCEEEEECCCCc
Confidence 45677788899999999987665432211 1112234678999999999974 34699999999999999999999999
Q ss_pred CHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHhhcceeccccccccccHHHHHhcCCCCCCCHHHHHHHHHHcchH
Q 000984 1083 GKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAH 1162 (1198)
Q Consensus 1083 GKSTL~~lL~R~ydp~~G~I~IDG~dI~~i~l~~LR~~IsiV~Qdp~LF~gTIreNI~~g~~~~~tdeei~~Al~~A~l~ 1162 (1198)
|||||+++|+|+|+|++|+|+|||+|+++++.+++|++|++|||+|.||++||+|||.||.. .++++++++|++.++++
T Consensus 92 GKSTLl~ll~gl~~p~~G~I~i~G~~i~~~~~~~~r~~i~~v~Q~~~lf~~Tv~eNi~~~~~-~~~~~~~~~~~~~~~l~ 170 (306)
T 3nh6_A 92 GKSTILRLLFRFYDISSGCIRIDGQDISQVTQASLRSHIGVVPQDTVLFNDTIADNIRYGRV-TAGNDEVEAAAQAAGIH 170 (306)
T ss_dssp HHHHHHHHHTTSSCCSEEEEEETTEETTSBCHHHHHHTEEEECSSCCCCSEEHHHHHHTTST-TCCHHHHHHHHHHHTCH
T ss_pred hHHHHHHHHHcCCCCCCcEEEECCEEcccCCHHHHhcceEEEecCCccCcccHHHHHHhhcc-cCCHHHHHHHHHHhCcH
Confidence 99999999999999999999999999999999999999999999999999999999999954 68899999999999999
Q ss_pred HHHHhcccccccee
Q 000984 1163 KFICSLQQVRTSRL 1176 (1198)
Q Consensus 1163 dfI~~LP~g~dt~v 1176 (1198)
+++..+|+||+|.+
T Consensus 171 ~~i~~lp~gl~t~~ 184 (306)
T 3nh6_A 171 DAIMAFPEGYRTQV 184 (306)
T ss_dssp HHHHHSTTGGGCEE
T ss_pred HHHHhccchhhhHh
Confidence 99999999999976
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* | Back alignment and structure |
|---|
Probab=99.97 E-value=3.3e-32 Score=333.18 Aligned_cols=199 Identities=25% Similarity=0.348 Sum_probs=165.3
Q ss_pred cEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcce
Q 000984 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKI 462 (1198)
Q Consensus 383 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i 462 (1198)
.++++|++++|++ ..|+++||++++||+++|+||||||||||+++|+|+++|++|+|.++ .++
T Consensus 357 ~l~~~~l~~~~~~----~~l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~-------------~~i 419 (607)
T 3bk7_A 357 LVEYPRLVKDYGS----FKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWD-------------LTV 419 (607)
T ss_dssp EEEECCEEEECSS----CEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBSCCCCC-------------CCE
T ss_pred EEEEeceEEEecc----eEEEecccccCCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEEe-------------eEE
Confidence 5899999999952 36899999999999999999999999999999999999999999762 379
Q ss_pred EEEcCCCCC-CcccHHHHHhcC-CCCC-CHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhhcc
Q 000984 463 GLVSQEPVL-FTGSIKDNIAYG-KDDA-TTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILK 539 (1198)
Q Consensus 463 ~~v~Q~~~l-~~~ti~~Ni~~~-~~~~-~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal~~ 539 (1198)
+|+||++.. +..||++|+... .... ..+.+.+ .++.+ |+.........+||||||||++|||||++
T Consensus 420 ~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~---------~l~~~--~l~~~~~~~~~~LSGGe~QRv~iAraL~~ 488 (607)
T 3bk7_A 420 AYKPQYIKAEYEGTVYELLSKIDSSKLNSNFYKTE---------LLKPL--GIIDLYDRNVEDLSGGELQRVAIAATLLR 488 (607)
T ss_dssp EEECSSCCCCCSSBHHHHHHHHHHHHHHCHHHHHH---------THHHH--TCTTTTTSBGGGCCHHHHHHHHHHHHHTS
T ss_pred EEEecCccCCCCCcHHHHHHhhhccCCCHHHHHHH---------HHHHc--CCchHhcCChhhCCHHHHHHHHHHHHHHh
Confidence 999999865 578999998753 1100 1111222 22222 44444566667899999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHhHHHHHHHHHHHh--CCCeEEEEecCcchhhc-cCEEEEEeC--CEEEEecChhhHhc
Q 000984 540 DPRILLLDEATSALDAESEKVVQEALDRIM--VNRTTVIVAHRLSTVRN-ADMIAVIHR--GKIVEKGTHSKLVE 609 (1198)
Q Consensus 540 ~~~illlDe~ts~lD~~~~~~i~~~i~~~~--~~~t~i~itH~~~~~~~-~d~i~~l~~--G~i~~~g~~~~l~~ 609 (1198)
+|++|||||||++||+.+...+.+.|+++. .++|+|+|||+++.+.. ||||++|++ |++...|+|+++..
T Consensus 489 ~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~adrv~vl~~~~g~~~~~g~p~~~~~ 563 (607)
T 3bk7_A 489 DADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLIVFEGEPGRHGRALPPMGMRE 563 (607)
T ss_dssp CCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCEEHHH
T ss_pred CCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEcCCcceEEecCCHHHHHh
Confidence 999999999999999999999999998874 47999999999999875 999999986 88888999988764
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.7e-32 Score=331.04 Aligned_cols=199 Identities=24% Similarity=0.356 Sum_probs=165.9
Q ss_pred cEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcce
Q 000984 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKI 462 (1198)
Q Consensus 383 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i 462 (1198)
.++++|+++.|++ ..|+++||++++||+++|+||||||||||+++|+|+++|++|+|.++ .+|
T Consensus 287 ~l~~~~l~~~~~~----~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~-------------~~i 349 (538)
T 1yqt_A 287 LVTYPRLVKDYGS----FRLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEWD-------------LTV 349 (538)
T ss_dssp EEEECCEEEEETT----EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBCCCCCC-------------CCE
T ss_pred EEEEeeEEEEECC----EEEEeCccccCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEC-------------ceE
Confidence 5899999999952 36899999999999999999999999999999999999999999762 379
Q ss_pred EEEcCCCCC-CcccHHHHHhcC-CCC-CCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhhcc
Q 000984 463 GLVSQEPVL-FTGSIKDNIAYG-KDD-ATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILK 539 (1198)
Q Consensus 463 ~~v~Q~~~l-~~~ti~~Ni~~~-~~~-~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal~~ 539 (1198)
+|+||++.. +..||.+|+... .+. ...+. +.+.++.+ |+.........+||||||||++|||||++
T Consensus 350 ~~v~Q~~~~~~~~tv~~~~~~~~~~~~~~~~~---------~~~~l~~~--~l~~~~~~~~~~LSGGe~qrv~lAraL~~ 418 (538)
T 1yqt_A 350 AYKPQYIKADYEGTVYELLSKIDASKLNSNFY---------KTELLKPL--GIIDLYDREVNELSGGELQRVAIAATLLR 418 (538)
T ss_dssp EEECSSCCCCCSSBHHHHHHHHHHHHHTCHHH---------HHHTTTTT--TCGGGTTSBGGGCCHHHHHHHHHHHHHTS
T ss_pred EEEecCCcCCCCCcHHHHHHhhhccCCCHHHH---------HHHHHHHc--CChhhhcCChhhCCHHHHHHHHHHHHHHh
Confidence 999999976 577999988642 110 01111 12233333 55555667778899999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHhHHHHHHHHHHHh--CCCeEEEEecCcchhhc-cCEEEEEeC--CEEEEecChhhHhc
Q 000984 540 DPRILLLDEATSALDAESEKVVQEALDRIM--VNRTTVIVAHRLSTVRN-ADMIAVIHR--GKIVEKGTHSKLVE 609 (1198)
Q Consensus 540 ~~~illlDe~ts~lD~~~~~~i~~~i~~~~--~~~t~i~itH~~~~~~~-~d~i~~l~~--G~i~~~g~~~~l~~ 609 (1198)
+|++|||||||++||+.+...+.+.|+++. .++|+|+|||+++.+.. ||||++|++ |++...|+++++..
T Consensus 419 ~p~lLlLDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vsHd~~~~~~~~drv~vl~~~~~~~~~~g~~~~~~~ 493 (538)
T 1yqt_A 419 DADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLMVFEGEPGKYGRALPPMGMRE 493 (538)
T ss_dssp CCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCEEHHH
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCcceEeecCCHHHHHh
Confidence 999999999999999999999999998874 38999999999999875 999999986 78888999988764
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.2e-31 Score=324.20 Aligned_cols=200 Identities=21% Similarity=0.285 Sum_probs=165.0
Q ss_pred ccEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcc
Q 000984 382 GDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKK 461 (1198)
Q Consensus 382 g~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~ 461 (1198)
..++++|+++.|++ ..|++.||++++||+++|+||||||||||+++|+|+++|++|+|.++|. .
T Consensus 268 ~~l~~~~l~~~~~~----~~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~------------~ 331 (538)
T 3ozx_A 268 TKMKWTKIIKKLGD----FQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEKQ------------I 331 (538)
T ss_dssp EEEEECCEEEEETT----EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSBCCEESSCC------------C
T ss_pred ceEEEcceEEEECC----EEEEeccceECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCe------------e
Confidence 35889999999953 4688889999999999999999999999999999999999999998763 6
Q ss_pred eEEEcCCCCC-CcccHHHHHhcCCCCC---CHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhh
Q 000984 462 IGLVSQEPVL-FTGSIKDNIAYGKDDA---TTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAI 537 (1198)
Q Consensus 462 i~~v~Q~~~l-~~~ti~~Ni~~~~~~~---~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal 537 (1198)
++|+||++.. +..||++|+.+..... ....+.++ ++.+ |+.........+||||||||++|||||
T Consensus 332 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~---------l~~~--~l~~~~~~~~~~LSGGq~QRv~iAraL 400 (538)
T 3ozx_A 332 LSYKPQRIFPNYDGTVQQYLENASKDALSTSSWFFEEV---------TKRL--NLHRLLESNVNDLSGGELQKLYIAATL 400 (538)
T ss_dssp EEEECSSCCCCCSSBHHHHHHHHCSSTTCTTSHHHHHT---------TTTT--TGGGCTTSBGGGCCHHHHHHHHHHHHH
T ss_pred eEeechhcccccCCCHHHHHHHhhhhccchhHHHHHHH---------HHHc--CCHHHhcCChhhCCHHHHHHHHHHHHH
Confidence 9999999864 5789999998643221 11222222 2222 555556667788999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh--CCCeEEEEecCcchhhc-cCEEEEEeC--CEEEEecChhhHh
Q 000984 538 LKDPRILLLDEATSALDAESEKVVQEALDRIM--VNRTTVIVAHRLSTVRN-ADMIAVIHR--GKIVEKGTHSKLV 608 (1198)
Q Consensus 538 ~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~--~~~t~i~itH~~~~~~~-~d~i~~l~~--G~i~~~g~~~~l~ 608 (1198)
+++|++|||||||++||+.+...+.+.|+++. .++|+|+|||+++.+.. ||||++|++ |.+...+++.++.
T Consensus 401 ~~~p~lLlLDEPT~gLD~~~~~~i~~~l~~l~~~~g~tvi~vsHdl~~~~~~aDri~vl~~~~~~~~~~~~~~~~~ 476 (538)
T 3ozx_A 401 AKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDLSIHDYIADRIIVFKGEPEKAGLATSPVTLK 476 (538)
T ss_dssp HSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCEEHH
T ss_pred HcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCcceeccCCChHHHH
Confidence 99999999999999999999999999998875 47899999999999875 999999986 5666677776653
|
| >2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=2.3e-35 Score=328.81 Aligned_cols=218 Identities=19% Similarity=0.263 Sum_probs=174.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCccCCCCcccCCCcccEEEEeEEEEcCCCCCCccccceeEEEeCCCE
Q 000984 335 MSLGEASPCLSAFGAGQAAAFKMFETINRKPEIDAYDTKGKILDDIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTT 414 (1198)
Q Consensus 335 ~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~ 414 (1198)
.++..+...+..+..+..+..|+.+.+..+++..... .. ..+..+.|+++||+|+|+ .++|+|+||+|++|++
T Consensus 56 ~~v~~~~~~~~~~~~a~~a~~ri~~~l~~~~~~~~~~--~~-~~~~~~~i~~~~vs~~y~----~~vL~~vsl~i~~Ge~ 128 (305)
T 2v9p_A 56 KHVKDCATMVRHYLRAETQALSMPAYIKARCKLATGE--GS-WKSILTFFNYQNIELITF----INALKLWLKGIPKKNC 128 (305)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHCCSS--CC-THHHHHHHHHTTCCHHHH----HHHHHHHHHTCTTCSE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCC--Cc-ccccCCeEEEEEEEEEcC----hhhhccceEEecCCCE
Confidence 4455666667778888899999999887644321110 11 011234589999999995 4699999999999999
Q ss_pred EEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcceEEEcCCCCCCcccHHH-HHhcCCCCCCHHHHH
Q 000984 415 AALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKD-NIAYGKDDATTEEIR 493 (1198)
Q Consensus 415 ~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~-Ni~~~~~~~~~~~~~ 493 (1198)
++|+||||||||||+++|+|++ +|+| ++|++|+|++|.+|+++ ||.++ ++.++
T Consensus 129 vaIvGpsGsGKSTLl~lL~gl~---~G~I------------------~~~v~q~~~lf~~ti~~~ni~~~-~~~~~---- 182 (305)
T 2v9p_A 129 LAFIGPPNTGKSMLCNSLIHFL---GGSV------------------LSFANHKSHFWLASLADTRAALV-DDATH---- 182 (305)
T ss_dssp EEEECSSSSSHHHHHHHHHHHH---TCEE------------------ECGGGTTSGGGGGGGTTCSCEEE-EEECH----
T ss_pred EEEECCCCCcHHHHHHHHhhhc---CceE------------------EEEecCccccccccHHHHhhccC-ccccH----
Confidence 9999999999999999999999 7888 56789999999999998 99986 33332
Q ss_pred HHHHHhcHHHHHHh-CCCCccchhcCCCCCCChHHHHHHhHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhCCC
Q 000984 494 VATELANAAKFIDK-LPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNR 572 (1198)
Q Consensus 494 ~~~~~~~~~~~i~~-l~~g~~t~v~~~g~~lSgGqkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~ 572 (1198)
+++++++. +|+|++ |.+|||||||| |||++++|+||| ||+||+++++.+..
T Consensus 183 ------~~~~~i~~~L~~gld------g~~LSgGqkQR---ARAll~~p~iLl----Ts~LD~~~~~~i~~--------- 234 (305)
T 2v9p_A 183 ------ACWRYFDTYLRNALD------GYPVSIDRKHK---AAVQIKAPPLLV----TSNIDVQAEDRYLY--------- 234 (305)
T ss_dssp ------HHHHHHHHTTTGGGG------TCCEECCCSSC---CCCEECCCCEEE----EESSCSTTCGGGGG---------
T ss_pred ------HHHHHHHHHhHccCC------ccCcCHHHHHH---HHHHhCCCCEEE----ECCCCHHHHHHHHH---------
Confidence 23456777 899987 77999999999 999999999999 99999999887752
Q ss_pred eEEEEecCcchhhccCEEEEEeCCEEEEecChhhHhcCCCchhHHHHHHH
Q 000984 573 TTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVEDPEGAYSQLIRLQ 622 (1198)
Q Consensus 573 t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~ 622 (1198)
+|||++.+..||+| +|++|+|++.|+++++ ++.|++++..+
T Consensus 235 ----ltH~~~~~~~aD~i-vl~~G~iv~~g~~~el----~~~y~~l~~~~ 275 (305)
T 2v9p_A 235 ----LHSRVQTFRFEQPC-TDESGEQPFNITDADW----KSFFVRLWGRL 275 (305)
T ss_dssp ----GTTTEEEEECCCCC-CCC---CCCCCCHHHH----HHHHHHSTTTT
T ss_pred ----HhCCHHHHHhCCEE-EEeCCEEEEeCCHHHH----HHHHHHHHHHc
Confidence 29999999999999 9999999999999999 46777776543
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A | Back alignment and structure |
|---|
Probab=99.97 E-value=1.8e-31 Score=335.87 Aligned_cols=205 Identities=22% Similarity=0.380 Sum_probs=156.3
Q ss_pred cEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcce
Q 000984 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKI 462 (1198)
Q Consensus 383 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i 462 (1198)
.|+++|++|+|++. .+++|+|+||++++||+++|+||||||||||+++|.|+++|++|+|.++|. .++
T Consensus 671 mL~v~nLs~~Y~g~-~~~iL~dVSl~I~~GeivaIiGpNGSGKSTLLklLaGll~P~sG~I~~~~~-----------~~I 738 (986)
T 2iw3_A 671 IVKVTNMEFQYPGT-SKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEVYTHEN-----------CRI 738 (986)
T ss_dssp EEEEEEEEECCTTC-SSCSEEEEEEEEETTCEEEECSCCCHHHHHHHHHHTTSSCCSEEEEEECTT-----------CCE
T ss_pred eEEEEeeEEEeCCC-CceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEcCc-----------cce
Confidence 49999999999642 256999999999999999999999999999999999999999999999872 258
Q ss_pred EEEcCCCCC-----CcccHHHHHhcCCCC---------------------------------------------------
Q 000984 463 GLVSQEPVL-----FTGSIKDNIAYGKDD--------------------------------------------------- 486 (1198)
Q Consensus 463 ~~v~Q~~~l-----~~~ti~~Ni~~~~~~--------------------------------------------------- 486 (1198)
+|++|++.. ...|+++++.+....
T Consensus 739 ~yv~Q~~~~~l~~~~~~t~~e~i~~~~q~g~d~~~~~~~~~~l~~ed~~~~~~~~~~~g~~r~~~~i~~r~~~~~~~~~e 818 (986)
T 2iw3_A 739 AYIKQHAFAHIESHLDKTPSEYIQWRFQTGEDRETMDRANRQINENDAEAMNKIFKIEGTPRRIAGIHSRRKFKNTYEYE 818 (986)
T ss_dssp EEECHHHHHHGGGCTTSCHHHHHHHHTTTSSCTTTTTTTSCCCCSSCSSGGGCCEEETTEEEEEEEEEEEEEETTEEEEE
T ss_pred EeeccchhhhhhcccccCHHHHHHHHhhccchhhhhhhhhhccchhhhhhhhcccccccchhhhhhhhhhhhhcccchhh
Confidence 888887621 234666665421000
Q ss_pred ------------------CC--------HHH----HHH---------HHH--------HhcHHHHHHhCCCCccch--hc
Q 000984 487 ------------------AT--------TEE----IRV---------ATE--------LANAAKFIDKLPQGIDTL--VG 517 (1198)
Q Consensus 487 ------------------~~--------~~~----~~~---------~~~--------~~~~~~~i~~l~~g~~t~--v~ 517 (1198)
.+ .++ ..+ +.. ...+.+.++.+ |++.. ..
T Consensus 819 ~~~sv~ENi~l~~~~~~~lt~~en~~~~~~~l~~~~~~~v~~~d~~~~~~~g~~~~~~~~~i~~~Le~l--GL~~~~~~~ 896 (986)
T 2iw3_A 819 CSFLLGENIGMKSERWVPMMSVDNAWIPRGELVESHSKMVAEVDMKEALASGQFRPLTRKEIEEHCSML--GLDPEIVSH 896 (986)
T ss_dssp EEEEEEESTTSTTCEEEECCGGGCEEEEGGGTHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHHHHHHT--TCCHHHHHH
T ss_pred hhhhhhhhhhcccccccccchhhhhhhhhHHHhhhHhhhhhhhhhhhhhhhcccchhHHHHHHHHHHHc--CCCchhhcC
Confidence 00 000 000 000 01123344444 66543 35
Q ss_pred CCCCCCChHHHHHHhHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhCCCeEEEEecCcchhhc-cCEEEEEeCC
Q 000984 518 EHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRN-ADMIAVIHRG 596 (1198)
Q Consensus 518 ~~g~~lSgGqkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~-~d~i~~l~~G 596 (1198)
....+||||||||++|||||+.+|++|||||||++||+.+...+.+.|+++ ++|+|+|||+++.+.. ||+|++|++|
T Consensus 897 ~~~~~LSGGQkQRVaLArAL~~~P~LLLLDEPT~gLD~~s~~~L~~~L~~~--g~tVIiISHD~e~v~~l~DrVivL~~G 974 (986)
T 2iw3_A 897 SRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEF--EGGVIIITHSAEFTKNLTEEVWAVKDG 974 (986)
T ss_dssp SCGGGCCHHHHHHHHHHHHHTTCCSEEEEECGGGTCCHHHHHHHHHHHHSC--SSEEEEECSCHHHHTTTCCEEECCBTT
T ss_pred CCccccCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHh--CCEEEEEECCHHHHHHhCCEEEEEECC
Confidence 567789999999999999999999999999999999999999999888765 5799999999999864 9999999999
Q ss_pred EEEEecC
Q 000984 597 KIVEKGT 603 (1198)
Q Consensus 597 ~i~~~g~ 603 (1198)
++++.|+
T Consensus 975 ~Iv~~G~ 981 (986)
T 2iw3_A 975 RMTPSGH 981 (986)
T ss_dssp BCCC---
T ss_pred EEEEeCC
Confidence 9987664
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.5e-30 Score=317.69 Aligned_cols=198 Identities=23% Similarity=0.384 Sum_probs=161.9
Q ss_pred EeEEEEcCCCCCCccccceeEEEeCC-----CEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcc
Q 000984 387 RDVYFSYPARPNEQIFSGFSISISSG-----TTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKK 461 (1198)
Q Consensus 387 ~~v~~~y~~~~~~~~l~~i~l~i~~g-----~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~ 461 (1198)
++++|+|+.. ..+++|+||++++| |+++|+||||||||||+++|.|+++|++|+. +. +..
T Consensus 350 ~~~~~~y~~~--~~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p~~G~~------~~-------~~~ 414 (608)
T 3j16_B 350 ASRAFSYPSL--KKTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQD------IP-------KLN 414 (608)
T ss_dssp SSSCCEECCE--EEECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCCSBCCC------CC-------SCC
T ss_pred cceeEEecCc--ccccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCCCCCCcC------cc-------CCc
Confidence 5677888642 45899999999999 7899999999999999999999999999973 11 236
Q ss_pred eEEEcCCCC-CCcccHHHHHhcCCC--CCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhhc
Q 000984 462 IGLVSQEPV-LFTGSIKDNIAYGKD--DATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAIL 538 (1198)
Q Consensus 462 i~~v~Q~~~-l~~~ti~~Ni~~~~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal~ 538 (1198)
++|+||++. .|..|+++|+..... ....+...++++.. |+.........+||||||||++|||||.
T Consensus 415 i~~~~q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~l~~l-----------~l~~~~~~~~~~LSGGqkQRv~iAraL~ 483 (608)
T 3j16_B 415 VSMKPQKIAPKFPGTVRQLFFKKIRGQFLNPQFQTDVVKPL-----------RIDDIIDQEVQHLSGGELQRVAIVLALG 483 (608)
T ss_dssp EEEECSSCCCCCCSBHHHHHHHHCSSTTTSHHHHHHTHHHH-----------TSTTTSSSBSSSCCHHHHHHHHHHHHTT
T ss_pred EEEecccccccCCccHHHHHHHHhhcccccHHHHHHHHHHc-----------CChhhhcCChhhCCHHHHHHHHHHHHHH
Confidence 999999975 467899999864221 12233333333322 4444456667789999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh--CCCeEEEEecCcchhhc-cCEEEEEeC--CEEEEecChhhHhcC
Q 000984 539 KDPRILLLDEATSALDAESEKVVQEALDRIM--VNRTTVIVAHRLSTVRN-ADMIAVIHR--GKIVEKGTHSKLVED 610 (1198)
Q Consensus 539 ~~~~illlDe~ts~lD~~~~~~i~~~i~~~~--~~~t~i~itH~~~~~~~-~d~i~~l~~--G~i~~~g~~~~l~~~ 610 (1198)
.+|++|||||||++||+.+...+.+.|+++. .++|+|+|||+++.+.. ||||++|++ |+++..|+|++++..
T Consensus 484 ~~p~lLlLDEPT~gLD~~~~~~i~~ll~~l~~~~g~tviivtHdl~~~~~~aDrvivl~~~~g~~~~~g~p~~~~~~ 560 (608)
T 3j16_B 484 IPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAFIVEHDFIMATYLADKVIVFEGIPSKNAHARAPESLLTG 560 (608)
T ss_dssp SCCSEEEECCTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEECEEETTTEEECCCCEEHHHH
T ss_pred hCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCCCeEEecCChHHHhhh
Confidence 9999999999999999999999999998864 48999999999999875 999999996 899999999998763
|
| >3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.1e-29 Score=318.90 Aligned_cols=202 Identities=25% Similarity=0.387 Sum_probs=149.2
Q ss_pred CccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHh----------------------ccCCCCCCeEEECCeecCCcCHH
Q 000984 399 EQIFSGFSISISSGTTAALVGQSGSGKSTVISLIE----------------------RFYDPQAGEVLIDGINLKEFQLQ 456 (1198)
Q Consensus 399 ~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~----------------------g~~~~~~G~i~i~g~~~~~~~~~ 456 (1198)
..+|+|+||+|++||+++|+||||||||||+++|+ |+ .+.+|.|.++|.++...+..
T Consensus 335 ~~~L~~vsl~I~~Ge~vaIiGpnGsGKSTLl~~i~~~~~~~~~~~~~~~~g~~~~i~gl-~~~~~~i~~~~~~~~~~~~~ 413 (670)
T 3ux8_A 335 EHNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGL-EHLDKVIDIDQSPIGRTPRS 413 (670)
T ss_dssp STTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHCCCSCCCSCSEEECG-GGCSEEEECCSSCSCSSTTC
T ss_pred ccccccceeEecCCCEEEEEeeCCCCHHHHHHHHHHHHHHHHhhhcccccccccccccc-cccCceeEeccccCCCCCCc
Confidence 35899999999999999999999999999998764 22 23456888998887644321
Q ss_pred HHhc-----------------------------------------ceEEEcCCCCC------------------------
Q 000984 457 WIRK-----------------------------------------KIGLVSQEPVL------------------------ 471 (1198)
Q Consensus 457 ~~r~-----------------------------------------~i~~v~Q~~~l------------------------ 471 (1198)
..+. ..+++.|+..+
T Consensus 414 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 493 (670)
T 3ux8_A 414 NPATYTGVFDDIRDVFASTNEAKVRGYKKGRFSFNVKGGRCEACHGDGIIKIEMHFLPDVYVPCEVCHGKRYNRETLEVT 493 (670)
T ss_dssp CHHHHHTHHHHHHHHHHTSHHHHHHTCCGGGGCTTSTTTBCTTTTTCCC------------CCCTTTTTCCBCHHHHTCC
T ss_pred chhhhhhhhHHHHHHhcccchhhhcccccccccccCCCCccccccccceEeeecccccccccccccccCcccChhhhhee
Confidence 1100 11233332221
Q ss_pred ---------CcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCcc-chhcCCCCCCChHHHHHHhHHHhhccCC
Q 000984 472 ---------FTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGID-TLVGEHGTQLSGGQKQRIAIARAILKDP 541 (1198)
Q Consensus 472 ---------~~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~-t~v~~~g~~lSgGqkqri~lARal~~~~ 541 (1198)
+..|++||+.+.... . ...++. +.+..+ |+. ...++...+||||||||++|||||+++|
T Consensus 494 ~~~~~~~~~~~ltv~e~l~~~~~~--~-~~~~~~------~~l~~~--~l~~~~~~~~~~~LSgG~~qrv~iAraL~~~p 562 (670)
T 3ux8_A 494 YKGKNIAEVLDMTVEDALDFFASI--P-KIKRKL------ETLYDV--GLGYMKLGQPATTLSGGEAQRVKLAAELHRRS 562 (670)
T ss_dssp BTTBCHHHHHTSBHHHHHHHTTTC--H-HHHHHH------HHHHHT--TCTTSBTTCCGGGCCHHHHHHHHHHHHHHSCC
T ss_pred ecCCCHHHHhhCCHHHHHHHHHHh--h-hHHHHH------HHHHHc--CCchhhccCCchhCCHHHHHHHHHHHHHhhCC
Confidence 135889999875432 1 111111 223333 343 2346677899999999999999999887
Q ss_pred ---CEEEEeCCCCCCCHHhHHHHHHHHHHHh-CCCeEEEEecCcchhhccCEEEEE------eCCEEEEecChhhHhcCC
Q 000984 542 ---RILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRNADMIAVI------HRGKIVEKGTHSKLVEDP 611 (1198)
Q Consensus 542 ---~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~~~d~i~~l------~~G~i~~~g~~~~l~~~~ 611 (1198)
++|||||||++||+.+.+.+.+.|+++. +++|+|+|||+++.+..||+|++| ++|+|++.|+++++.+..
T Consensus 563 ~~p~llllDEPt~~LD~~~~~~i~~~l~~l~~~g~tvi~vtHd~~~~~~~d~i~~l~~~~g~~~G~i~~~g~~~~~~~~~ 642 (670)
T 3ux8_A 563 NGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLDVIKTADYIIDLGPEGGDRGGQIVAVGTPEEVAEVK 642 (670)
T ss_dssp CSCEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTTCSEEEEEESSSGGGCCEEEEEECHHHHHTCT
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHhCCEEEEecCCcCCCCCEEEEecCHHHHHhCC
Confidence 5999999999999999999999998875 479999999999999889999999 899999999999998754
Q ss_pred C
Q 000984 612 E 612 (1198)
Q Consensus 612 ~ 612 (1198)
.
T Consensus 643 ~ 643 (670)
T 3ux8_A 643 E 643 (670)
T ss_dssp T
T ss_pred c
Confidence 3
|
| >3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.5e-28 Score=309.85 Aligned_cols=202 Identities=27% Similarity=0.453 Sum_probs=150.7
Q ss_pred ccccceeEEEeCCCEEEEEcCCCCcHHHHH---------HHHhccCCCC------CC------eEEECCeecCCcCH---
Q 000984 400 QIFSGFSISISSGTTAALVGQSGSGKSTVI---------SLIERFYDPQ------AG------EVLIDGINLKEFQL--- 455 (1198)
Q Consensus 400 ~~l~~i~l~i~~g~~~~ivG~~GsGKStl~---------~~l~g~~~~~------~G------~i~i~g~~~~~~~~--- 455 (1198)
..|+|+||+|++|++++|+|+||||||||+ +.+.+...+. +| .+.+|+.++.....
T Consensus 598 ~~Lk~Vsl~I~~Geiv~I~G~SGSGKSTLl~~~l~~~l~~~l~~~~~~~g~~~~~~G~~~i~~~i~idq~pig~~~rs~~ 677 (916)
T 3pih_A 598 NNLKNIDVEIPLGVFVCVTGVSGSGKSSLVMETLYPALMNLLHKTKLPAGEFDSIEGHENIDKMIAIDQSPIGRTPRSNP 677 (916)
T ss_dssp TTCCSEEEEEESSSEEEEECSTTSSHHHHHHHTHHHHHHHHHHCCCCCCCCCSEEECGGGCCEEEEECSCCCCCCTTCCH
T ss_pred ccccccceEEcCCcEEEEEccCCCChhhhHHHHHHHHHHHHhccccccccccccccccccccceEeeccccccccccccc
Confidence 479999999999999999999999999997 3333333222 22 35555555432210
Q ss_pred -------HHHh-------------------------------cceEEEcCCCCCC-------------------------
Q 000984 456 -------QWIR-------------------------------KKIGLVSQEPVLF------------------------- 472 (1198)
Q Consensus 456 -------~~~r-------------------------------~~i~~v~Q~~~l~------------------------- 472 (1198)
+.+| +..|+++|+..++
T Consensus 678 at~~~~~~~ir~lfa~~~~a~~~g~~~~~fs~n~~~grc~~c~g~G~i~~e~~flp~~~v~c~~c~g~r~~~e~l~i~~~ 757 (916)
T 3pih_A 678 ATYTKVFDEIRSLFAMTPAAKARGYNKSRFSFNLKGGRCEACQGQGYVKIEMLFLPDVYVECDVCKGKRYNRETLEITYK 757 (916)
T ss_dssp HHHSSHHHHHHHHHTTSHHHHHSSCCGGGGCTTSTTTBCTTTTTSSEEEECCTTSCCEEEECTTTTTSCBCTTGGGCCBT
T ss_pred cchhhhHHHHHHHhccchHHHhcccccccccccccccccccccCcceEEEeeeccCcceeecccccccccchhhhhhhhc
Confidence 1111 2356777776544
Q ss_pred --------cccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccc-hhcCCCCCCChHHHHHHhHHHhhccCC--
Q 000984 473 --------TGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDT-LVGEHGTQLSGGQKQRIAIARAILKDP-- 541 (1198)
Q Consensus 473 --------~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t-~v~~~g~~lSgGqkqri~lARal~~~~-- 541 (1198)
..|+++++.|........+..+ .+..+ |+.. .+++.+.+|||||||||+|||||+++|
T Consensus 758 g~~i~~vl~~tv~eal~f~~~~~~~~~~~~---------~L~~v--GL~~~~lgq~~~~LSGGErQRV~LAraL~~~p~~ 826 (916)
T 3pih_A 758 GKNISDILDMTVDEALEFFKNIPSIKRTLQ---------VLHDV--GLGYVKLGQPATTLSGGEAQRIKLASELRKRDTG 826 (916)
T ss_dssp TBCHHHHHSSBHHHHHHHTTTCHHHHHHHH---------HHHHT--TGGGSBTTCCSTTCCHHHHHHHHHHHHHTSCCCS
T ss_pred cCCHHHHhhCCHHHHHHHHhcchhHHHHHH---------HHHHc--CCchhhccCCccCCCHHHHHHHHHHHHHhhCCCC
Confidence 2467777776433211122222 23333 4443 468889999999999999999999876
Q ss_pred -CEEEEeCCCCCCCHHhHHHHHHHHHHHh-CCCeEEEEecCcchhhccCEEEEE------eCCEEEEecChhhHhcCCC
Q 000984 542 -RILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRNADMIAVI------HRGKIVEKGTHSKLVEDPE 612 (1198)
Q Consensus 542 -~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~~~d~i~~l------~~G~i~~~g~~~~l~~~~~ 612 (1198)
++|||||||++||+.+.+.+.+.|+++. +++|+|+|+|+++.+..||+|++| ++|+|++.|+|+++++++.
T Consensus 827 p~LLILDEPTsGLD~~~~~~L~~lL~~L~~~G~TVIvI~HdL~~i~~ADrIivLgp~gg~~~G~Iv~~Gtpeel~~~~~ 905 (916)
T 3pih_A 827 RTLYILDEPTVGLHFEDVRKLVEVLHRLVDRGNTVIVIEHNLDVIKNADHIIDLGPEGGKEGGYIVATGTPEEIAKNPH 905 (916)
T ss_dssp SEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTTCSEEEEEESSSGGGCCEEEEEESHHHHHSCTT
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEecCCCCCCCCEEEEEcCHHHHHhCCc
Confidence 7999999999999999999999998875 489999999999999999999999 8999999999999998743
|
| >2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=1.9e-28 Score=306.42 Aligned_cols=102 Identities=25% Similarity=0.429 Sum_probs=89.2
Q ss_pred HHhCCCCccch-hcCCCCCCChHHHHHHhHHHhhccCC--CEEEEeCCCCCCCHHhHHHHHHHHHHHhC-CCeEEEEecC
Q 000984 505 IDKLPQGIDTL-VGEHGTQLSGGQKQRIAIARAILKDP--RILLLDEATSALDAESEKVVQEALDRIMV-NRTTVIVAHR 580 (1198)
Q Consensus 505 i~~l~~g~~t~-v~~~g~~lSgGqkqri~lARal~~~~--~illlDe~ts~lD~~~~~~i~~~i~~~~~-~~t~i~itH~ 580 (1198)
+..+ |++.. .+....+|||||||||+|||||.++| ++|||||||++||++..+.+.+.++.+.. +.|+|+|+|+
T Consensus 363 L~~v--GL~~l~l~r~~~tLSGGe~QRV~LA~aL~~~p~~~llILDEPT~~Ld~~~~~~L~~~l~~L~~~G~TVIvVeHd 440 (842)
T 2vf7_A 363 LLHL--GLGYLGLDRSTPTLSPGELQRLRLATQLYSNLFGVVYVLDEPSAGLHPADTEALLSALENLKRGGNSLFVVEHD 440 (842)
T ss_dssp HHHT--TCTTSBTTCBGGGSCHHHHHHHHHHHHTTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHTTTCEEEEECCC
T ss_pred HHhC--CCCcCCccCCcCcCCHHHHHHHHHHHHHhhCCCCeEEEeeCccccCCHHHHHHHHHHHHHHHHcCCEEEEEcCC
Confidence 4444 66644 67777899999999999999999999 49999999999999999999998887753 7899999999
Q ss_pred cchhhccCEEEEE------eCCEEEEecChhhHh
Q 000984 581 LSTVRNADMIAVI------HRGKIVEKGTHSKLV 608 (1198)
Q Consensus 581 ~~~~~~~d~i~~l------~~G~i~~~g~~~~l~ 608 (1198)
++.+..||+|++| ++|++++.|+++++.
T Consensus 441 l~~l~~aD~ii~lgpgaG~~~G~iv~~g~~~~~~ 474 (842)
T 2vf7_A 441 LDVIRRADWLVDVGPEAGEKGGEILYSGPPEGLK 474 (842)
T ss_dssp HHHHTTCSEEEEECSSSGGGCCSEEEEECGGGGG
T ss_pred HHHHHhCCEEEEeCCCcccCCCEEEEecCHHHHH
Confidence 9999889999999 689999999887664
|
| >2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=2.6e-27 Score=296.12 Aligned_cols=211 Identities=25% Similarity=0.394 Sum_probs=156.7
Q ss_pred ccEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHH-HhccC-------CC---------------
Q 000984 382 GDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISL-IERFY-------DP--------------- 438 (1198)
Q Consensus 382 g~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~-l~g~~-------~~--------------- 438 (1198)
..++++|+++ ..|+|+||+|++||+++|+|+||||||||++. |.|.+ .|
T Consensus 501 ~~L~v~~l~~--------~~L~~vsl~i~~Geiv~I~G~nGSGKSTLl~~~L~g~l~~~~g~~~~~~g~~~~~~~~~~~~ 572 (842)
T 2vf7_A 501 GWLELNGVTR--------NNLDNLDVRFPLGVMTSVTGVSGSGKSTLVSQALVDALAAHFGQPVNPDPEDDEDPADHTAG 572 (842)
T ss_dssp CEEEEEEEEE--------TTEEEEEEEEESSSEEEEECCTTSSHHHHCCCCCHHHHHHHTTC-----------------C
T ss_pred ceEEEEeeee--------cccccceEEEcCCCEEEEEcCCCcCHHHHHHHHHHHHHHHHhcCCCCccccccccccccccc
Confidence 4599999975 16999999999999999999999999999996 66543 22
Q ss_pred ---CCC-------eEEECCeecCCcCH----------HHHhcceEEEc---------CC---------------------
Q 000984 439 ---QAG-------EVLIDGINLKEFQL----------QWIRKKIGLVS---------QE--------------------- 468 (1198)
Q Consensus 439 ---~~G-------~i~i~g~~~~~~~~----------~~~r~~i~~v~---------Q~--------------------- 468 (1198)
.+| .|.+||.++...+. +.+|..++++| +.
T Consensus 573 ~~~~~G~~~~~~~~i~vdq~~i~~~~rs~~at~~~~~~~ir~~fa~~~~~r~~g~~~~~fs~n~~~g~c~~c~g~G~~~~ 652 (842)
T 2vf7_A 573 SARLGGDLAQITRLVRVDQKPIGRTPRSNMATYTGLFDQVRKLFAATPLAKKRGYNAGRFSFNVKGGRCEHCQGEGWVMV 652 (842)
T ss_dssp CCEEEESGGGCCEEEEECSSCSCSSTTCCHHHHSSTHHHHHHHHHTSHHHHHTTCCGGGGCSSSTTTBCTTTTTCSEEEE
T ss_pred cccccCcccccceEEEECCeeCCCCccccchhhhhHHHHHHHHHhcChHHHhcCCccccccccccccccccccCCCccch
Confidence 356 68899988754322 33443322222 11
Q ss_pred -CCCC-------------------------cccHHHHHh--------cCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccc
Q 000984 469 -PVLF-------------------------TGSIKDNIA--------YGKDDATTEEIRVATELANAAKFIDKLPQGIDT 514 (1198)
Q Consensus 469 -~~l~-------------------------~~ti~~Ni~--------~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t 514 (1198)
-.++ .-||.||+. |... . .... ...+.++.+ |+..
T Consensus 653 ~~~f~~~v~~~c~~c~G~r~~~e~l~v~~~~~si~e~l~ltv~e~l~~~~~--~-~~~~------~~~~~L~~~--gL~~ 721 (842)
T 2vf7_A 653 ELLFLPSVYAPCPVCHGTRYNAETLEVEYRGKNIADVLALTVDEAHDFFAD--E-SAIF------RALDTLREV--GLGY 721 (842)
T ss_dssp TTCSSSCEEEECTTTTTCCBCTTGGGCCBTTBCHHHHHTCBHHHHHHHTTT--S-HHHH------HHHHHHHHT--TCTT
T ss_pred hhhcCCccceecccccCcccchhhHhhhhcCCCHHHHHhccHHHHHHHhhc--c-hHHH------HHHHHHHHc--CCCc
Confidence 1111 124555543 3211 0 1111 123344555 5655
Q ss_pred -hhcCCCCCCChHHHHHHhHHHhhccC---CCEEEEeCCCCCCCHHhHHHHHHHHHHHh-CCCeEEEEecCcchhhccCE
Q 000984 515 -LVGEHGTQLSGGQKQRIAIARAILKD---PRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRNADM 589 (1198)
Q Consensus 515 -~v~~~g~~lSgGqkqri~lARal~~~---~~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~~~d~ 589 (1198)
.++....+||||||||++|||+|.++ |++|||||||++||+.+.+.+.+.|+++. +++|+|+|||+++.+..||+
T Consensus 722 ~~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~tVIvisHdl~~i~~aDr 801 (842)
T 2vf7_A 722 LRLGQPATELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDAGNTVIAVEHKMQVVAASDW 801 (842)
T ss_dssp SBTTCCGGGCCHHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTTCSE
T ss_pred ccccCCcccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHhCCE
Confidence 46788889999999999999999996 69999999999999999999999998874 57999999999999988999
Q ss_pred EEEE------eCCEEEEecChhhHhcCC
Q 000984 590 IAVI------HRGKIVEKGTHSKLVEDP 611 (1198)
Q Consensus 590 i~~l------~~G~i~~~g~~~~l~~~~ 611 (1198)
|++| ++|+|++.|+++++.+..
T Consensus 802 ii~L~p~~g~~~G~Iv~~g~~~el~~~~ 829 (842)
T 2vf7_A 802 VLDIGPGAGEDGGRLVAQGTPAEVAQAA 829 (842)
T ss_dssp EEEECSSSGGGCCSEEEEECHHHHTTCT
T ss_pred EEEECCCCCCCCCEEEEEcCHHHHHhCc
Confidence 9999 699999999999998763
|
| >2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A | Back alignment and structure |
|---|
Probab=99.94 E-value=3.7e-27 Score=293.76 Aligned_cols=212 Identities=25% Similarity=0.385 Sum_probs=158.7
Q ss_pred ccEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHh-ccC-------CCCCC------------
Q 000984 382 GDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIE-RFY-------DPQAG------------ 441 (1198)
Q Consensus 382 g~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~-g~~-------~~~~G------------ 441 (1198)
..++++|++. ..|+|+||+|++||+++|+|+||||||||++.|+ |.+ .+..|
T Consensus 628 ~~L~v~~l~~--------~~Lk~Vsl~I~~Geiv~I~G~nGSGKSTLl~~ll~g~l~~~l~~~~~~~G~~~~i~G~~~~~ 699 (972)
T 2r6f_A 628 RWLEVVGARE--------HNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGLEHLD 699 (972)
T ss_dssp CEEEEEEECS--------SSCCSEEEEEESSSEEECCBCTTSSHHHHHTTTHHHHHHHHHHCCCCCCCSCSEEECGGGCS
T ss_pred eEEEEecCcc--------cccccceEEEcCCCEEEEEcCCCCCHHHHHHHHHHHHHHHhhcCCCCCCCceeeeccccccc
Confidence 3588888741 2699999999999999999999999999999864 221 11233
Q ss_pred -eEEECCeecCCcC---HH-------HHh---------cceEEEcCCCCC---------------------C--------
Q 000984 442 -EVLIDGINLKEFQ---LQ-------WIR---------KKIGLVSQEPVL---------------------F-------- 472 (1198)
Q Consensus 442 -~i~i~g~~~~~~~---~~-------~~r---------~~i~~v~Q~~~l---------------------~-------- 472 (1198)
.|.+||.++.... +. .+| +.++|++|...+ |
T Consensus 700 ~~I~idq~pig~~~rs~paty~~v~d~ir~lfa~~~ear~~Gy~~~~fsfn~~ggrC~~C~g~G~i~~em~fl~~v~~~c 779 (972)
T 2r6f_A 700 KVIDIDQSPIGRTPRSNPATYTGVFDDIRDVFASTNEAKVRGYKKGRFSFNVKGGRCEACHGDGIIKIEMHFLPDVYVPC 779 (972)
T ss_dssp EEEEECSSCSCSSTTCCHHHHHTHHHHHHHHHHTSHHHHHTTCCTTTTCTTSTTTBCTTTTTCSEEEECCSSSCCEEEEC
T ss_pred eEEEEcCcccccCccccchhhhhHHHHHHHHhccCHHHHHhcccccccccccccccccccccccceeeehhccccccccc
Confidence 3788888874321 11 111 346888885321 0
Q ss_pred --------------------------cccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccc-hhcCCCCCCCh
Q 000984 473 --------------------------TGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDT-LVGEHGTQLSG 525 (1198)
Q Consensus 473 --------------------------~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t-~v~~~g~~lSg 525 (1198)
..|+.+|+.|... . ....++ .+.++.+ |+.. ..+....+|||
T Consensus 780 e~c~G~r~~~e~l~v~~~g~sI~dvl~ltv~e~l~~~~~-~--~~~~~~------~~~L~~~--gL~~~~l~~~~~~LSG 848 (972)
T 2r6f_A 780 EVCHGKRYNRETLEVTYKGKNIAEVLDMTVEDALDFFAS-I--PKIKRK------LETLYDV--GLGYMKLGQPATTLSG 848 (972)
T ss_dssp TTTTTCCBCTTGGGCCBTTBCHHHHHTSBHHHHHHHTCS-C--HHHHHH------HHHHHHT--TCSSSBTTCCGGGCCH
T ss_pred cccccccccchhhhhhccCCCHHHhhhcCHHHHHHHHhc-c--hhHHHH------HHHHHHc--CCCcccccCchhhCCH
Confidence 1256666665322 1 111111 2334444 6665 57888889999
Q ss_pred HHHHHHhHHHhhccCC---CEEEEeCCCCCCCHHhHHHHHHHHHHHh-CCCeEEEEecCcchhhccCEEEEE------eC
Q 000984 526 GQKQRIAIARAILKDP---RILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRNADMIAVI------HR 595 (1198)
Q Consensus 526 Gqkqri~lARal~~~~---~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~~~d~i~~l------~~ 595 (1198)
|||||++|||||+++| ++|||||||++||+.+.+.+.+.|+++. +++|+|+|||+++.+..||+|++| ++
T Consensus 849 GekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvisHdl~~i~~aDrIivL~p~gG~~~ 928 (972)
T 2r6f_A 849 GEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLDVIKTADYIIDLGPEGGDRG 928 (972)
T ss_dssp HHHHHHHHHHHHSSCCCSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTTCSEEEEECSSSTTSC
T ss_pred HHHHHHHHHHHHhcCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHhCCEEEEEcCCCCCCC
Confidence 9999999999999875 9999999999999999999999998865 579999999999998889999999 68
Q ss_pred CEEEEecChhhHhcCCC
Q 000984 596 GKIVEKGTHSKLVEDPE 612 (1198)
Q Consensus 596 G~i~~~g~~~~l~~~~~ 612 (1198)
|+|++.|+++++.+...
T Consensus 929 G~Iv~~g~~~el~~~~~ 945 (972)
T 2r6f_A 929 GQIVAVGTPEEVAEVKE 945 (972)
T ss_dssp CSEEEEESHHHHHTCTT
T ss_pred CEEEEecCHHHHHhCch
Confidence 99999999999987633
|
| >4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.2e-26 Score=276.18 Aligned_cols=200 Identities=19% Similarity=0.280 Sum_probs=151.2
Q ss_pred cccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCC--------------------------------------CCCCe
Q 000984 401 IFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYD--------------------------------------PQAGE 442 (1198)
Q Consensus 401 ~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~--------------------------------------~~~G~ 442 (1198)
.+++++|++++| +++|+||||||||||+++|.++.. +..|+
T Consensus 50 ~l~~v~l~~~~G-~~~lvG~NGaGKStLl~aI~~l~~~~~~~~~i~~g~~~~~v~~~~~~~~~~~~~~l~r~~~~~~~~~ 128 (415)
T 4aby_A 50 TITQLELELGGG-FCAFTGETGAGKSIIVDALGLLLGGRANHDLIRSGEKELLVTGFWGDGDESEADSASRRLSSAGRGA 128 (415)
T ss_dssp TEEEEEEECCSS-EEEEEESHHHHHHHHTHHHHHHTTCCCCGGGBCTTCSEEEEEEEC--------CEEEEEEETTSCEE
T ss_pred ceeeEEEecCCC-cEEEECCCCCCHHHHHHHHHHHhCCCccHHHhcCCCCeEEEEEEEEecCCCceEEEEEEEecCCceE
Confidence 789999999999 999999999999999999976654 44788
Q ss_pred EEECCeecCCcCHHHHhcc-eEEEcCCCCCCcccHHHHHhcCCCCCCH--H-------HHHHHHHH--------------
Q 000984 443 VLIDGINLKEFQLQWIRKK-IGLVSQEPVLFTGSIKDNIAYGKDDATT--E-------EIRVATEL-------------- 498 (1198)
Q Consensus 443 i~i~g~~~~~~~~~~~r~~-i~~v~Q~~~l~~~ti~~Ni~~~~~~~~~--~-------~~~~~~~~-------------- 498 (1198)
+.+||.+++..++.++.+. +++++|++.++..+..++..|-...... . ++.++.+.
T Consensus 129 i~ing~~~~~~~~~~~~~~~i~~~~q~~~l~l~~~~~~r~~ld~~~~~~~~~~~~~~~~y~~~~~~~~~l~~~~~~~~~~ 208 (415)
T 4aby_A 129 ARLSGEVVSVRELQEWAQGRLTIHWQHSAVSLLSPANQRGLLDRRVTKEAQAYAAAHAAWREAVSRLERLQASESSKHPT 208 (415)
T ss_dssp EEETTEEECHHHHHHHHTTTEEEETTTCTTTTSSHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHC----------
T ss_pred EEECCEECCHHHHHHHHhhceEEecCcccccccCHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHhhhhhhcCc
Confidence 9999999987777777766 8999999988766655444332111100 0 00000000
Q ss_pred ----------------------------------hcHHHHHHhC--CC----------------Cccc---hhcCCCCC-
Q 000984 499 ----------------------------------ANAAKFIDKL--PQ----------------GIDT---LVGEHGTQ- 522 (1198)
Q Consensus 499 ----------------------------------~~~~~~i~~l--~~----------------g~~t---~v~~~g~~- 522 (1198)
..+.+.+..+ |+ |.+. .+..++..
T Consensus 209 ~i~~~~~l~~~~~~l~~~~~~l~~~R~~~~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 288 (415)
T 4aby_A 209 SLVPRGSVDALHAELLKVGQALDAAREREAEPLVDSLLAVIRELGMPHARMEFALSALAEPAAYGLSDVLLRFSANPGEE 288 (415)
T ss_dssp -CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCTTCEEEEEEEEEEEEETTEEEEEEEEEESSSSCC
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEEEeeccCCCCCCCceEEEEEEcCCCCc
Confidence 0011122222 11 2221 23444433
Q ss_pred -------CChHHHHHHhHHHhhccCC--CEEEEeCCCCCCCHHhHHHHHHHHHHHhCCCeEEEEecCcchhhccCEEEEE
Q 000984 523 -------LSGGQKQRIAIARAILKDP--RILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVI 593 (1198)
Q Consensus 523 -------lSgGqkqri~lARal~~~~--~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~~d~i~~l 593 (1198)
||||||||++|||+|+.+| ++|||||||++||+.+...+.+.|+++.+++|+|+|||+++.+..||++++|
T Consensus 289 ~~~~~~~lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~~~~~vi~itH~~~~~~~~d~i~~l 368 (415)
T 4aby_A 289 LGPLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLADTRQVLVVTHLAQIAARAHHHYKV 368 (415)
T ss_dssp CCBGGGCSCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSCHHHHTTCSEEEEE
T ss_pred ccchhhhcCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHhhcCeEEEE
Confidence 8999999999999999999 9999999999999999999999999987789999999999998889999999
Q ss_pred ----eCCEEEEe
Q 000984 594 ----HRGKIVEK 601 (1198)
Q Consensus 594 ----~~G~i~~~ 601 (1198)
++|+++..
T Consensus 369 ~k~~~~G~~~~~ 380 (415)
T 4aby_A 369 EKQVEDGRTVSH 380 (415)
T ss_dssp EEEEETTEEEEE
T ss_pred EEeccCCceEEE
Confidence 99998754
|
| >2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.94 E-value=4e-30 Score=304.50 Aligned_cols=180 Identities=13% Similarity=0.141 Sum_probs=144.1
Q ss_pred cceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCC-e-EEECCeecCCcCHHHHhcceEEEcCCCCCC----cccH
Q 000984 403 SGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAG-E-VLIDGINLKEFQLQWIRKKIGLVSQEPVLF----TGSI 476 (1198)
Q Consensus 403 ~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G-~-i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~----~~ti 476 (1198)
.++||++++|++++|+||||||||||+++|+|++.|++| + |.+|| + .|+.++|+||++.+| ..|+
T Consensus 129 ~~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~~G~~pI~vdg-~--------~~~~i~~vpq~~~l~~~~~~~tv 199 (460)
T 2npi_A 129 EKIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYALKFNAYQPLYINL-D--------PQQPIFTVPGCISATPISDILDA 199 (460)
T ss_dssp HHHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTHHHHCCCCEEEEC-C--------TTSCSSSCSSCCEEEECCSCCCT
T ss_pred hcCceEeCCCCEEEEECCCCCCHHHHHHHHhCcccccCCceeEEEcC-C--------ccCCeeeeccchhhcccccccch
Confidence 378999999999999999999999999999999999999 9 99998 1 367899999998544 2589
Q ss_pred HHHHhcCCCCC----CHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHh--hccCCCE----EEE
Q 000984 477 KDNIAYGKDDA----TTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARA--ILKDPRI----LLL 546 (1198)
Q Consensus 477 ~~Ni~~~~~~~----~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARa--l~~~~~i----lll 546 (1198)
+||+ |+.... ..+++.. .+..+ |++.... ..+||||||||++|||| |+.+|++ |||
T Consensus 200 ~eni-~~~~~~~~~~~~~~~~~---------ll~~~--gl~~~~~--~~~LSgGq~qrlalAra~rL~~~p~i~~sGLlL 265 (460)
T 2npi_A 200 QLPT-WGQSLTSGATLLHNKQP---------MVKNF--GLERINE--NKDLYLECISQLGQVVGQRLHLDPQVRRSGCIV 265 (460)
T ss_dssp TCTT-CSCBCBSSCCSSCCBCC---------EECCC--CSSSGGG--CHHHHHHHHHHHHHHHHHHHHHCHHHHHSCEEE
T ss_pred hhhh-cccccccCcchHHHHHH---------HHHHh--CCCcccc--hhhhhHHHHHHHHHHHHHHhccCcccCcceEEE
Confidence 9999 754310 1111111 11222 4544433 67899999999999999 9999999 999
Q ss_pred eC-CCCCCCHHhHHHHHHHHHHHhCCCeEEEEecCcc------hhh-ccCE-----EEEEe-CCEEEEecChhhHhc
Q 000984 547 DE-ATSALDAESEKVVQEALDRIMVNRTTVIVAHRLS------TVR-NADM-----IAVIH-RGKIVEKGTHSKLVE 609 (1198)
Q Consensus 547 De-~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~------~~~-~~d~-----i~~l~-~G~i~~~g~~~~l~~ 609 (1198)
|| ||++||+. .+.+.+.+++. ++|+|+|+|+.+ .+. .||+ |++|+ +|+++ .|+++++.+
T Consensus 266 DEpPts~LD~~-~~~l~~l~~~~--~~tviiVth~~~~~l~~~~~~~~~dr~~~~~vi~l~k~G~iv-~g~~~~~~~ 338 (460)
T 2npi_A 266 DTPSISQLDEN-LAELHHIIEKL--NVNIMLVLCSETDPLWEKVKKTFGPELGNNNIFFIPKLDGVS-AVDDVYKRS 338 (460)
T ss_dssp ECCCGGGSCSS-CHHHHHHHHHT--TCCEEEEECCSSCTHHHHHHHHHHHHHCGGGEEEECCCTTCC-CCCHHHHHH
T ss_pred eCCcccccChh-HHHHHHHHHHh--CCCEEEEEccCchhhhHHHHHHhcccccCCEEEEEeCCCcEE-ECCHHHHhh
Confidence 99 99999999 66666666653 689999999987 443 4899 99999 99999 999988743
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=2.6e-26 Score=251.03 Aligned_cols=134 Identities=34% Similarity=0.650 Sum_probs=123.3
Q ss_pred ccEEEeeeeEECCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHhh
Q 000984 1041 GEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQ 1120 (1198)
Q Consensus 1041 G~I~f~nVsf~Y~~~~~~~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~~i~l~~LR~~ 1120 (1198)
.+|+++||+|+|+++ +.++|+||||+|++||++||+||||||||||+++|.|+++|++|+|.+||.|+.+++...+|++
T Consensus 6 ~~~~~~~l~~~y~~~-~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~i~g~~~~~~~~~~~~~~ 84 (247)
T 2ff7_A 6 HDITFRNIRFRYKPD-SPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQ 84 (247)
T ss_dssp EEEEEEEEEEESSTT-SCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHH
T ss_pred CceeEEEEEEEeCCC-CcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhc
Confidence 479999999999421 2469999999999999999999999999999999999999999999999999999999999999
Q ss_pred cceeccccccccccHHHHHhcCCCCCCCHHHHHHHHHHcchHHHHHhcccccccee
Q 000984 1121 MGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQVRTSRL 1176 (1198)
Q Consensus 1121 IsiV~Qdp~LF~gTIreNI~~g~~~~~tdeei~~Al~~A~l~dfI~~LP~g~dt~v 1176 (1198)
|++|||+|.+|++|++|||.++. ...++++++++++.+++.+++..+|+|+++.+
T Consensus 85 i~~v~Q~~~l~~~tv~enl~~~~-~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~ 139 (247)
T 2ff7_A 85 VGVVLQDNVLLNRSIIDNISLAN-PGMSVEKVIYAAKLAGAHDFISELREGYNTIV 139 (247)
T ss_dssp EEEECSSCCCTTSBHHHHHTTTC-TTCCHHHHHHHHHHHTCHHHHHTSTTGGGCBC
T ss_pred EEEEeCCCccccccHHHHHhccC-CCCCHHHHHHHHHHhChHHHHHhCcchhhhhh
Confidence 99999999999999999999974 35678889999999999999999999998753
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.92 E-value=7.4e-26 Score=247.35 Aligned_cols=132 Identities=36% Similarity=0.675 Sum_probs=121.3
Q ss_pred EEEeeeeEECCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHhhcc
Q 000984 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMG 1122 (1198)
Q Consensus 1043 I~f~nVsf~Y~~~~~~~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~~i~l~~LR~~Is 1122 (1198)
|+++||+|+|++ +.++|+||||+|++||++||+||||||||||+++|.|+++|++|+|.+||.|+.+.+...+|++|+
T Consensus 2 l~~~~l~~~y~~--~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (243)
T 1mv5_A 2 LSARHVDFAYDD--SEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIG 79 (243)
T ss_dssp EEEEEEEECSSS--SSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCC
T ss_pred EEEEEEEEEeCC--CCceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhhEE
Confidence 789999999952 346999999999999999999999999999999999999999999999999999988888999999
Q ss_pred eeccccccccccHHHHHhcCCCCCCCHHHHHHHHHHcchHHHHHhcccccccee
Q 000984 1123 LVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQVRTSRL 1176 (1198)
Q Consensus 1123 iV~Qdp~LF~gTIreNI~~g~~~~~tdeei~~Al~~A~l~dfI~~LP~g~dt~v 1176 (1198)
+|||+|.+|.+|++|||.++.....++++++++++.+++++++..+|+|+++.+
T Consensus 80 ~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~ 133 (243)
T 1mv5_A 80 FVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEV 133 (243)
T ss_dssp EECCSSCCCCEEHHHHTTSCTTSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEE
T ss_pred EEcCCCccccccHHHHHhhhccCCCCHHHHHHHHHHhChHHHHHhCccchhchh
Confidence 999999999999999999972235678889999999999999999999998864
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} | Back alignment and structure |
|---|
Probab=99.92 E-value=1.9e-25 Score=246.05 Aligned_cols=134 Identities=40% Similarity=0.664 Sum_probs=122.3
Q ss_pred ccEEEeeeeEECCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHhh
Q 000984 1041 GEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQ 1120 (1198)
Q Consensus 1041 G~I~f~nVsf~Y~~~~~~~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~~i~l~~LR~~ 1120 (1198)
+.|+++||+|+|++.+..++|+||||+|++||.+||+||||||||||+++|.|+++| +|+|.+||.|+.+++...+|++
T Consensus 16 ~~l~i~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-~G~I~i~g~~i~~~~~~~~~~~ 94 (260)
T 2ghi_A 16 VNIEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDA-EGDIKIGGKNVNKYNRNSIRSI 94 (260)
T ss_dssp CCEEEEEEEECCTTCCSSCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC-EEEEEETTEEGGGBCHHHHHTT
T ss_pred CeEEEEEEEEEeCCCCcCceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCCC-CeEEEECCEEhhhcCHHHHhcc
Confidence 469999999999743224699999999999999999999999999999999999987 8999999999999998999999
Q ss_pred cceeccccccccccHHHHHhcCCCCCCCHHHHHHHHHHcchHHHHHhcccccccee
Q 000984 1121 MGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQVRTSRL 1176 (1198)
Q Consensus 1121 IsiV~Qdp~LF~gTIreNI~~g~~~~~tdeei~~Al~~A~l~dfI~~LP~g~dt~v 1176 (1198)
|++|||+|.+|++|++|||.++.. ..+++++.++++.+++.+++..+|+|+||.+
T Consensus 95 i~~v~Q~~~l~~~tv~enl~~~~~-~~~~~~~~~~l~~~~l~~~~~~l~~~~~~~~ 149 (260)
T 2ghi_A 95 IGIVPQDTILFNETIKYNILYGKL-DATDEEVIKATKSAQLYDFIEALPKKWDTIV 149 (260)
T ss_dssp EEEECSSCCCCSEEHHHHHHTTCT-TCCHHHHHHHHHHTTCHHHHHTSTTGGGCEE
T ss_pred EEEEcCCCcccccCHHHHHhccCC-CCCHHHHHHHHHHhCCHHHHHhccccccccc
Confidence 999999999999999999999743 4578889999999999999999999998854
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=3.3e-25 Score=245.54 Aligned_cols=135 Identities=41% Similarity=0.705 Sum_probs=121.4
Q ss_pred cccEEEeeeeEECCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHh
Q 000984 1040 KGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQ 1119 (1198)
Q Consensus 1040 ~G~I~f~nVsf~Y~~~~~~~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~~i~l~~LR~ 1119 (1198)
.+.|+++||+|+|+++++.++|+||||+|++||.+||+||||||||||+++|.|+++|++|+|.+||.|+.+++...+|+
T Consensus 14 ~~~l~~~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~ 93 (271)
T 2ixe_A 14 KGLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHHYLHT 93 (271)
T ss_dssp CCCEEEEEEEECCTTCTTSCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHHHH
T ss_pred CceEEEEEEEEEeCCCCCceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEcccCCHHHHhc
Confidence 45699999999996421246999999999999999999999999999999999999999999999999999988889999
Q ss_pred hcceeccccccccccHHHHHhcCCCCCCCH-HHHHHHHHHcchHHHHHhccccccce
Q 000984 1120 QMGLVSQEPVLFNDTIRANIAYGKGGDATE-AEIQAASEMANAHKFICSLQQVRTSR 1175 (1198)
Q Consensus 1120 ~IsiV~Qdp~LF~gTIreNI~~g~~~~~td-eei~~Al~~A~l~dfI~~LP~g~dt~ 1175 (1198)
+|++|||+|.+|++|++|||.++.. ..++ +++.++++.++++++++.+|+|+++.
T Consensus 94 ~i~~v~Q~~~l~~~tv~enl~~~~~-~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~ 149 (271)
T 2ixe_A 94 QVAAVGQEPLLFGRSFRENIAYGLT-RTPTMEEITAVAMESGAHDFISGFPQGYDTE 149 (271)
T ss_dssp HEEEECSSCCCCSSBHHHHHHTTCS-SCCCHHHHHHHHHHHTCHHHHHHSTTGGGSB
T ss_pred cEEEEecCCccccccHHHHHhhhcc-cCChHHHHHHHHHHHhHHHHHHhhhcchhhh
Confidence 9999999999999999999999743 3444 77888999999999999999998764
|
| >3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=99.91 E-value=3.8e-25 Score=278.90 Aligned_cols=166 Identities=27% Similarity=0.408 Sum_probs=118.5
Q ss_pred HHHHHhccCCCCCCeEEECCeecCCcCHHHHhcceEEEcCCCCCCcccHHHHHhcCCCC-CCHHHHHHHHHHhcHHHHHH
Q 000984 428 VISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDD-ATTEEIRVATELANAAKFID 506 (1198)
Q Consensus 428 l~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~Ni~~~~~~-~~~~~~~~~~~~~~~~~~i~ 506 (1198)
+..+.-+.+.|..|+|.++|.++.++....+...++++.+- .+...+ .......+..+ ...+.+.
T Consensus 384 C~~C~g~rl~~~~~~V~i~G~~i~~~~~~~v~~~l~~~~~~------------~l~~~~~~~~~~~~~~~~--~~~~~L~ 449 (916)
T 3pih_A 384 CSVCGGRRLNREALSVKINGLNIHEFTELSISEELEFLKNL------------NLTEREREIVGELLKEIE--KRLEFLV 449 (916)
T ss_dssp CTTTCSCCBCTTGGGEEETTEEHHHHHHSBHHHHHHHHHSC------------CCCTTTTTTHHHHHHHHH--HHHHHHH
T ss_pred chhcccccCChHhcCcEECCccHHHhhhCCHHHHHHHHHhc------------cCcHHHHHHHHhhHHHHH--HHHHHHH
Confidence 34445566788999999999987554333333333332211 011000 01111111111 1123444
Q ss_pred hCCCCccch-hcCCCCCCChHHHHHHhHHHhhccCCC--EEEEeCCCCCCCHHhHHHHHHHHHHHh-CCCeEEEEecCcc
Q 000984 507 KLPQGIDTL-VGEHGTQLSGGQKQRIAIARAILKDPR--ILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLS 582 (1198)
Q Consensus 507 ~l~~g~~t~-v~~~g~~lSgGqkqri~lARal~~~~~--illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~ 582 (1198)
.+ |++.. .+....+||||||||++|||||.++|+ +|||||||++||+...+.+.+.|+++. +++|+|+|+|+++
T Consensus 450 ~v--gL~~l~l~r~~~~LSGGe~QRv~LAraL~~~p~~~lllLDEPT~gLD~~~~~~l~~~L~~L~~~G~TvivVtHd~~ 527 (916)
T 3pih_A 450 DV--GLEYLTLSRSATTLSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIKTLKKLRDLGNTVIVVEHDEE 527 (916)
T ss_dssp TT--TCTTCBTTSBGGGCCHHHHHHHHHHHHHHTTCCSCEEEEECTTTTCCGGGHHHHHHHHHHTTTTTCEEEEECCCHH
T ss_pred Hc--CCccccccCCcccCCHHHHHHHHHHHHHhhCCCCcEEEEECCccCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 44 66543 567778899999999999999999887 999999999999999999999998875 3789999999999
Q ss_pred hhhccCEEEEE------eCCEEEEecChhhHhc
Q 000984 583 TVRNADMIAVI------HRGKIVEKGTHSKLVE 609 (1198)
Q Consensus 583 ~~~~~d~i~~l------~~G~i~~~g~~~~l~~ 609 (1198)
.+..||+|++| ++|++++.|+++++++
T Consensus 528 ~~~~aD~ii~lgpgag~~~G~iv~~G~~~e~~~ 560 (916)
T 3pih_A 528 VIRNADHIIDIGPGGGTNGGRVVFQGTVDELLK 560 (916)
T ss_dssp HHHTCSEEEEEESSSGGGCSEEEEEECHHHHHH
T ss_pred HHHhCCEEEEEcCCcccCCCEEEEeechhhhhc
Confidence 99899999999 8999999999988764
|
| >1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.91 E-value=2e-24 Score=246.90 Aligned_cols=194 Identities=20% Similarity=0.265 Sum_probs=140.2
Q ss_pred cceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccC----------------------------------------------
Q 000984 403 SGFSISISSGTTAALVGQSGSGKSTVISLIERFY---------------------------------------------- 436 (1198)
Q Consensus 403 ~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~---------------------------------------------- 436 (1198)
+++++++.+| +++|+||||||||||+.+|..++
T Consensus 16 ~~~~l~~~~g-~~~i~G~NGsGKS~ll~ai~~llg~~~~~s~r~~~~~~li~~g~~~~~~~~~~~v~~~f~~~~~~~~i~ 94 (322)
T 1e69_A 16 RPSLIGFSDR-VTAIVGPNGSGKSNIIDAIKWVFGEQSKKELRASEKFDMIFAGSENLPPAGSAYVELVFEENGEEITVA 94 (322)
T ss_dssp SCEEEECCSS-EEEEECCTTTCSTHHHHHHHHTSCC----------CCTTBCCCBTTBCCCSEEEEEEEEESSSCEEEEE
T ss_pred CCeEEecCCC-cEEEECCCCCcHHHHHHHHHHHhCCCchhhcccccHHHhhccCccCCCCCceEEEEEEEEeCCeEEEEE
Confidence 3578899999 99999999999999999998432
Q ss_pred ----CCCCCeEEECCeecCCcCHHHHhcceEEEcCCCCCC-cccHHHHHhcCCCCCCH----------------HHHHHH
Q 000984 437 ----DPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLF-TGSIKDNIAYGKDDATT----------------EEIRVA 495 (1198)
Q Consensus 437 ----~~~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~-~~ti~~Ni~~~~~~~~~----------------~~~~~~ 495 (1198)
.+.+|.+.+||.+++..+...+...+++.||+..++ .|++.+|+.. .|.... +++.+.
T Consensus 95 r~~~~~~~~~~~ing~~~~~~~~~~~~~~~g~~~~~~~lv~qg~i~~~~~~-~p~~rr~~ld~~~~~~~~~~~y~rv~e~ 173 (322)
T 1e69_A 95 RELKRTGENTYYLNGSPVRLKDIRDRFAGTGLGVDFYSIVGQGQIDRIVNA-SPEELRLESSKHPTSLVPRGSYQRVNES 173 (322)
T ss_dssp EEEETTSCEEEEETTEEECHHHHHHHTTTSSTTTTCCSEEEHHHHHHHHTC----------------------CHHHHHH
T ss_pred EEEEcCCceEEEECCcCccHHHHHHHHHHcCCChhheeeEehhhHHHHHhc-cHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 233578899999886556667777899999988766 8999999874 232110 111111
Q ss_pred HHHh------------cH-HHHHHhCCCCccchhc------CCCCCCChHHHHHHhHHHhhc----cCCCEEEEeCCCCC
Q 000984 496 TELA------------NA-AKFIDKLPQGIDTLVG------EHGTQLSGGQKQRIAIARAIL----KDPRILLLDEATSA 552 (1198)
Q Consensus 496 ~~~~------------~~-~~~i~~l~~g~~t~v~------~~g~~lSgGqkqri~lARal~----~~~~illlDe~ts~ 552 (1198)
.... .+ .+....++.|+++.++ .....||||||||++||||+. ++|++|||||||++
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~ 253 (322)
T 1e69_A 174 FNRFISLLFFGGEGRLNIVSEAKSILDAGFEISIRKPGRRDQKLSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSP 253 (322)
T ss_dssp HHHHHHHHHTSCEEEC--------------CCEEECTTSCCCBGGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSS
T ss_pred HHHHHHHhcCCceEEEEeeccccccccCCeEEEEecCccccCchhhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCC
Confidence 1100 00 0011234446555432 234689999999999999996 78999999999999
Q ss_pred CCHHhHHHHHHHHHHHhCCCeEEEEecCcchhhccCEE--EEEeCCEE
Q 000984 553 LDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMI--AVIHRGKI 598 (1198)
Q Consensus 553 lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~~d~i--~~l~~G~i 598 (1198)
||+...+.+.+.++++.+++|+|++||+.+.+..||++ ++|++|+.
T Consensus 254 LD~~~~~~l~~~l~~~~~~~~vi~~tH~~~~~~~~d~~~~v~~~~g~s 301 (322)
T 1e69_A 254 LDDYNAERFKRLLKENSKHTQFIVITHNKIVMEAADLLHGVTMVNGVS 301 (322)
T ss_dssp CCHHHHHHHHHHHHHHTTTSEEEEECCCTTGGGGCSEEEEEEESSSCE
T ss_pred CCHHHHHHHHHHHHHhcCCCeEEEEECCHHHHhhCceEEEEEEeCCEE
Confidence 99999999999998886778999999998878889987 88888854
|
| >2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A | Back alignment and structure |
|---|
Probab=99.91 E-value=4.6e-24 Score=266.10 Aligned_cols=149 Identities=26% Similarity=0.403 Sum_probs=111.9
Q ss_pred CCCCCeEEECCeecCCcCHHHHhcceEEEcCCCCCCcccHHHHHhcCCCC-CCHHH-------HHHHHHHhcHHHHHHhC
Q 000984 437 DPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDD-ATTEE-------IRVATELANAAKFIDKL 508 (1198)
Q Consensus 437 ~~~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~Ni~~~~~~-~~~~~-------~~~~~~~~~~~~~i~~l 508 (1198)
.|....|.++|.+|. .+...||.|++.|...- .+.++ +.+..+.. +.+..+
T Consensus 433 ~~~~l~v~~~g~~i~------------------q~~~ltV~e~~~f~e~l~l~~~~~~i~~~~~~ei~~Rl---~~L~~v 491 (972)
T 2r6f_A 433 KKESLAVLVGGKHIG------------------EVTAMSVTEALAFFDGLELTEKEAQIARLILREIRDRL---GFLQNV 491 (972)
T ss_dssp CTTTTTEESSSCBHH------------------HHHTSBHHHHHHHHHHCCCCHHHHHHSHHHHHHHHHHH---HHHHHH
T ss_pred CHHHheeEECCCcHH------------------HHhhCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH---HHhhhC
Confidence 455667888886643 23456888888873211 12211 11222222 223333
Q ss_pred CCCccch-hcCCCCCCChHHHHHHhHHHhhccCC--CEEEEeCCCCCCCHHhHHHHHHHHHHHh-CCCeEEEEecCcchh
Q 000984 509 PQGIDTL-VGEHGTQLSGGQKQRIAIARAILKDP--RILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTV 584 (1198)
Q Consensus 509 ~~g~~t~-v~~~g~~lSgGqkqri~lARal~~~~--~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~ 584 (1198)
|++.. .+....+|||||||||+||+||..+| ++|||||||++||++..+.+.+.|+++. .+.|||+|+|+++.+
T Consensus 492 --GL~~l~ldR~~~tLSGGEkQRV~LA~aL~~~~~~~llILDEPTagLdp~~~~~L~~~L~~Lr~~G~TVIvVeHdl~~i 569 (972)
T 2r6f_A 492 --GLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHDEDTM 569 (972)
T ss_dssp --TCTTSBSSSBGGGCCHHHHHHHHHHHHHTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHTTTCEEEEECCCHHHH
T ss_pred --CCCccccCCccccCCHHHHHHHHHHHHHhhCCCCCEEEEeCcccCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHH
Confidence 66653 57777899999999999999999985 9999999999999999999999998875 478999999999999
Q ss_pred hccCEEEEE------eCCEEEEecChhhHh
Q 000984 585 RNADMIAVI------HRGKIVEKGTHSKLV 608 (1198)
Q Consensus 585 ~~~d~i~~l------~~G~i~~~g~~~~l~ 608 (1198)
..||+|++| ++|++++.|+++++.
T Consensus 570 ~~ADrIi~LgpgaG~~gG~iv~~G~~~e~~ 599 (972)
T 2r6f_A 570 LAADYLIDIGPGAGIHGGEVVAAGTPEEVM 599 (972)
T ss_dssp HSCSEEEEECSSSGGGCCSEEEEECTTTTT
T ss_pred HhCCEEEEeCCCccCCCCEEEEecCHHHHH
Confidence 999999999 789999999887654
|
| >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.91 E-value=2.2e-24 Score=249.06 Aligned_cols=134 Identities=25% Similarity=0.459 Sum_probs=123.6
Q ss_pred CcccEEEeeeeEECCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHH
Q 000984 1039 VKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLR 1118 (1198)
Q Consensus 1039 ~~G~I~f~nVsf~Y~~~~~~~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~~i~l~~LR 1118 (1198)
..+.|+++||+++|+.+ +.++|+||||+|++||.+||+||||||||||+++|.|+++ ++|+|.|||+|+.+++.+.+|
T Consensus 16 ~~~~i~~~~l~~~y~~~-~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~-~~G~I~i~G~~i~~~~~~~~r 93 (390)
T 3gd7_A 16 SGGQMTVKDLTAKYTEG-GNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGEIQIDGVSWDSITLEQWR 93 (390)
T ss_dssp SSCCEEEEEEEEESSSS-SCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSE-EEEEEEESSCBTTSSCHHHHH
T ss_pred CCCeEEEEEEEEEecCC-CeEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCC-CCeEEEECCEECCcCChHHHh
Confidence 45789999999999633 3469999999999999999999999999999999999998 899999999999999999999
Q ss_pred hhcceeccccccccccHHHHHhcCCCCCCCHHHHHHHHHHcchHHHHHhcccccccee
Q 000984 1119 QQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQVRTSRL 1176 (1198)
Q Consensus 1119 ~~IsiV~Qdp~LF~gTIreNI~~g~~~~~tdeei~~Al~~A~l~dfI~~LP~g~dt~v 1176 (1198)
++|++|||++.||++|++|||.+.. ...+++++++++.+++.+++.++|.+++|.+
T Consensus 94 r~ig~v~Q~~~lf~~tv~enl~~~~--~~~~~~v~~~l~~~~L~~~~~~~p~~l~~~i 149 (390)
T 3gd7_A 94 KAFGVIPQKVFIFSGTFRKNLDPNA--AHSDQEIWKVADEVGLRSVIEQFPGKLDFVL 149 (390)
T ss_dssp HTEEEESCCCCCCSEEHHHHHCTTC--CSCHHHHHHHHHHTTCHHHHTTSTTGGGCEE
T ss_pred CCEEEEcCCcccCccCHHHHhhhcc--ccCHHHHHHHHHHhCCHHHHhhccccccccc
Confidence 9999999999999999999998642 4678999999999999999999999988854
|
| >3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.90 E-value=6.8e-26 Score=240.53 Aligned_cols=157 Identities=19% Similarity=0.211 Sum_probs=100.1
Q ss_pred CccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcceEEEcCCCCCCcccHHH
Q 000984 399 EQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKD 478 (1198)
Q Consensus 399 ~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~ 478 (1198)
..+|+|+ ++||+++|+||||||||||+++|+|+ +|++|+|. +.++. .+....|++++|+||+| +|
T Consensus 13 ~~~l~~i----~~Ge~~~liG~nGsGKSTLl~~l~Gl-~p~~G~I~--~~~~~-~~~~~~~~~ig~v~q~~-------~e 77 (208)
T 3b85_A 13 KHYVDAI----DTNTIVFGLGPAGSGKTYLAMAKAVQ-ALQSKQVS--RIILT-RPAVEAGEKLGFLPGTL-------NE 77 (208)
T ss_dssp HHHHHHH----HHCSEEEEECCTTSSTTHHHHHHHHH-HHHTTSCS--EEEEE-ECSCCTTCCCCSSCC-----------
T ss_pred HHHHHhc----cCCCEEEEECCCCCCHHHHHHHHhcC-CCcCCeee--eEEec-CCchhhhcceEEecCCH-------HH
Confidence 4588985 89999999999999999999999999 99999994 33332 12234577899999998 66
Q ss_pred HH-hcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhhccCCCEEEEeCCCCCCCHHh
Q 000984 479 NI-AYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAES 557 (1198)
Q Consensus 479 Ni-~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal~~~~~illlDe~ts~lD~~~ 557 (1198)
|+ .++.+. .+.+........+.+.+ .. | | |||||++|||||+.+|++|||||||++ +
T Consensus 78 nl~~~~~~~--~~~~~~~~~~~~~~~~l-----------~~-g--l--Gq~qrv~lAraL~~~p~lllLDEPts~----~ 135 (208)
T 3b85_A 78 KIDPYLRPL--HDALRDMVEPEVIPKLM-----------EA-G--I--VEVAPLAYMRGRTLNDAFVILDEAQNT----T 135 (208)
T ss_dssp --CTTTHHH--HHHHTTTSCTTHHHHHH-----------HT-T--S--EEEEEGGGGTTCCBCSEEEEECSGGGC----C
T ss_pred HHHHHHHHH--HHHHHHhccHHHHHHHH-----------Hh-C--C--chHHHHHHHHHHhcCCCEEEEeCCccc----c
Confidence 76 332100 00000000001111222 11 1 1 999999999999999999999999999 7
Q ss_pred HHHHHHHHHHHhCCCeEEEEecCcchhhccCEEEEEeCC
Q 000984 558 EKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRG 596 (1198)
Q Consensus 558 ~~~i~~~i~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G 596 (1198)
.+.+.+.|+++.+++|+| +||+++.+.. +...++|
T Consensus 136 ~~~l~~~l~~l~~g~tii-vtHd~~~~~~---~~~~~~G 170 (208)
T 3b85_A 136 PAQMKMFLTRLGFGSKMV-VTGDITQVDL---PGGQKSG 170 (208)
T ss_dssp HHHHHHHHTTBCTTCEEE-EEEC---------------C
T ss_pred HHHHHHHHHHhcCCCEEE-EECCHHHHhC---cCCCCCc
Confidence 778888888764468888 9999886543 3334455
|
| >4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=8.1e-24 Score=218.73 Aligned_cols=149 Identities=19% Similarity=0.263 Sum_probs=107.9
Q ss_pred ceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcceEEEcCCCC--CCcccHHHHHh
Q 000984 404 GFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPV--LFTGSIKDNIA 481 (1198)
Q Consensus 404 ~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~--l~~~ti~~Ni~ 481 (1198)
|+||++++||+++|+||||||||||++++.+ |...+ +.+.+| ++++|++. .+.+++.+++.
T Consensus 1 ~vsl~i~~gei~~l~G~nGsGKSTl~~~~~~------~~~~~--------~~d~~~---g~~~~~~~~~~~~~~~~~~~~ 63 (171)
T 4gp7_A 1 SMKLTIPELSLVVLIGSSGSGKSTFAKKHFK------PTEVI--------SSDFCR---GLMSDDENDQTVTGAAFDVLH 63 (171)
T ss_dssp CEEEEEESSEEEEEECCTTSCHHHHHHHHSC------GGGEE--------EHHHHH---HHHCSSTTCGGGHHHHHHHHH
T ss_pred CccccCCCCEEEEEECCCCCCHHHHHHHHcc------CCeEE--------ccHHHH---HHhcCcccchhhHHHHHHHHH
Confidence 6899999999999999999999999999653 22222 223333 67788763 33344443332
Q ss_pred cCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhhccCCCEEEEeCCCCCCCHHhH---
Q 000984 482 YGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESE--- 558 (1198)
Q Consensus 482 ~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal~~~~~illlDe~ts~lD~~~~--- 558 (1198)
. .. ...+..|+.+.+... ...|||||||++||||+..+|++++|||||++||+.++
T Consensus 64 ~---------------~~-----~~~~~~g~~~~~~~~-~~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~R~ 122 (171)
T 4gp7_A 64 Y---------------IV-----SKRLQLGKLTVVDAT-NVQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKNRT 122 (171)
T ss_dssp H---------------HH-----HHHHHTTCCEEEESC-CCSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHTCS
T ss_pred H---------------HH-----HHHHhCCCeEEEECC-CCCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhccc
Confidence 1 00 011123565555543 34699999999999999999999999999999999944
Q ss_pred -------------HHHHHHHHHHh-CCCeEEEEecCcchhhccCEE
Q 000984 559 -------------KVVQEALDRIM-VNRTTVIVAHRLSTVRNADMI 590 (1198)
Q Consensus 559 -------------~~i~~~i~~~~-~~~t~i~itH~~~~~~~~d~i 590 (1198)
+.+.+.++++. ++.|+|+|||+++.+..++++
T Consensus 123 ~~~~~~~vi~~~~~~l~~~l~~l~~~g~tvi~vtH~~~~~~~~~~~ 168 (171)
T 4gp7_A 123 DRQVEEYVIRKHTQQMKKSIKGLQREGFRYVYILNSPEEVEEVVFE 168 (171)
T ss_dssp SCCCCHHHHHHHHHHHHHHSTTHHHHTCSEEEEECSHHHHHHEEEE
T ss_pred CCCCCHHHHHHHHHHhhhhhhhHHhcCCcEEEEeCCHHHhhhhhhc
Confidence 66777765543 489999999999998877664
|
| >3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=4.6e-22 Score=230.44 Aligned_cols=83 Identities=25% Similarity=0.374 Sum_probs=75.5
Q ss_pred CCCCCCChHHHHHHhHHHhhc------cCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh-CCCeEEEEecCcchhhccCEE
Q 000984 518 EHGTQLSGGQKQRIAIARAIL------KDPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRNADMI 590 (1198)
Q Consensus 518 ~~g~~lSgGqkqri~lARal~------~~~~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~~~d~i 590 (1198)
....+||||||||++|||||. .+|++|||||||++||+.+...+.+.++++. +++|+|+|||+++....||+|
T Consensus 275 ~~~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~~g~tvi~itH~~~~~~~~d~~ 354 (365)
T 3qf7_A 275 RPARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKVIVFITHDREFSEAFDRK 354 (365)
T ss_dssp EEGGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGGSSSEEEEEESCHHHHTTCSCE
T ss_pred CCchhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEE
Confidence 455679999999999999999 7999999999999999999999999998874 478999999999998889999
Q ss_pred EEEeCCEEEE
Q 000984 591 AVIHRGKIVE 600 (1198)
Q Consensus 591 ~~l~~G~i~~ 600 (1198)
++|++|++++
T Consensus 355 ~~l~~G~i~~ 364 (365)
T 3qf7_A 355 LRITGGVVVN 364 (365)
T ss_dssp EEEETTEEC-
T ss_pred EEEECCEEEe
Confidence 9999999975
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A | Back alignment and structure |
|---|
Probab=99.87 E-value=4e-22 Score=215.58 Aligned_cols=119 Identities=22% Similarity=0.406 Sum_probs=106.1
Q ss_pred ccEEEeeeeEECCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHhh
Q 000984 1041 GEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQ 1120 (1198)
Q Consensus 1041 G~I~f~nVsf~Y~~~~~~~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~~i~l~~LR~~ 1120 (1198)
+.|+++||+|+|+.+ +.++|+|+||+|++||.+||+||+|||||||+++|.|+++|++|+|.+|| +
T Consensus 5 ~~l~~~~l~~~y~~~-~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g-------------~ 70 (229)
T 2pze_A 5 TEVVMENVTAFWEEG-GTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG-------------R 70 (229)
T ss_dssp EEEEEEEEEECSSTT-SCCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEECS-------------C
T ss_pred ceEEEEEEEEEeCCC-CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCccEEEECC-------------E
Confidence 469999999999632 34699999999999999999999999999999999999999999999999 4
Q ss_pred cceeccccccccccHHHHHhcCCCCCCCHHHHHHHHHHcchHHHHHhccccccce
Q 000984 1121 MGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQVRTSR 1175 (1198)
Q Consensus 1121 IsiV~Qdp~LF~gTIreNI~~g~~~~~tdeei~~Al~~A~l~dfI~~LP~g~dt~ 1175 (1198)
|++|||+|.+|++|++|||.++. ...+....++++..++.+++..+|.+++|.
T Consensus 71 i~~v~q~~~~~~~tv~enl~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 123 (229)
T 2pze_A 71 ISFCSQFSWIMPGTIKENIIFGV--SYDEYRYRSVIKACQLEEDISKFAEKDNIV 123 (229)
T ss_dssp EEEECSSCCCCSBCHHHHHHTTS--CCCHHHHHHHHHHTTCHHHHTTSTTGGGSC
T ss_pred EEEEecCCcccCCCHHHHhhccC--CcChHHHHHHHHHhCcHHHHHhCccccccc
Confidence 99999999999999999999974 234556777888889999999999888764
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=1e-22 Score=220.93 Aligned_cols=140 Identities=24% Similarity=0.357 Sum_probs=114.6
Q ss_pred EEEeeeeEECCCCC-CccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHH----
Q 000984 1043 IELHHVSFKYPSRP-DVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWL---- 1117 (1198)
Q Consensus 1043 I~f~nVsf~Y~~~~-~~~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~~i~l~~L---- 1117 (1198)
|+++||+|+|+.++ +.++|+||||+|++||.+||+||||||||||+++|.|+++|++|+|.+||.|+.+++...+
T Consensus 2 l~~~~l~~~y~~~~~~~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~ 81 (235)
T 3tif_A 2 VKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIR 81 (235)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHH
T ss_pred EEEEEEEEEeCCCCcceeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHh
Confidence 78999999996432 2369999999999999999999999999999999999999999999999999999988765
Q ss_pred Hhhcceeccccccccc-cHHHHHhcCC----CCCCC----HHHHHHHHHHcchHHH-----HHhccccccceeeeeecc
Q 000984 1118 RQQMGLVSQEPVLFND-TIRANIAYGK----GGDAT----EAEIQAASEMANAHKF-----ICSLQQVRTSRLLLVMIP 1182 (1198)
Q Consensus 1118 R~~IsiV~Qdp~LF~g-TIreNI~~g~----~~~~t----deei~~Al~~A~l~df-----I~~LP~g~dt~v~~~~~~ 1182 (1198)
|++|++|||+|.+|.+ |++||+.++. ....+ .+++.++++..++.+. +.+|..|-.-+|+++.+-
T Consensus 82 ~~~i~~v~Q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~QRv~iAral 160 (235)
T 3tif_A 82 RDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARAL 160 (235)
T ss_dssp HHHEEEECTTCCCCTTSCHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGSCHHHHHHHHHHHHH
T ss_pred hccEEEEecCCccCCCCcHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChhhhhCChhhCCHHHHHHHHHHHHH
Confidence 4579999999999987 9999998631 01122 3457778888887553 566777777777766553
|
| >1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.86 E-value=6.1e-25 Score=236.49 Aligned_cols=166 Identities=15% Similarity=0.172 Sum_probs=118.9
Q ss_pred ccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCH-HHHhcceEEEcCCCCCCc-----
Q 000984 400 QIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQL-QWIRKKIGLVSQEPVLFT----- 473 (1198)
Q Consensus 400 ~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~-~~~r~~i~~v~Q~~~l~~----- 473 (1198)
.-|+|+||++++|++++|+||||||||||+++|+|++ | |+|.+ |+++..... ...+..++|++|++.+|.
T Consensus 11 ~~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~-p--G~i~~-g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 86 (218)
T 1z6g_A 11 SSGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF-P--NYFYF-SVSCTTRKKREKEKEGVDYYFIDKTIFEDKLKN 86 (218)
T ss_dssp -----------CCCCEEEECSTTSSHHHHHHHHHHHS-T--TTEEE-CCCEECSCCCSSCCBTTTBEECCHHHHHHHHHT
T ss_pred ccccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC-C--CcEEE-eecccCCCCCcccccCCeEEECCHHHHHHhhhc
Confidence 4799999999999999999999999999999999999 6 99999 877654322 234678999999986553
Q ss_pred ------ccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhH-----HHhhccCCC
Q 000984 474 ------GSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAI-----ARAILKDPR 542 (1198)
Q Consensus 474 ------~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~l-----ARal~~~~~ 542 (1198)
+++++| .+|.+ .+++.++++. +....++ .+||||||||++| ||+++.+|+
T Consensus 87 ~~~l~~~~~~~~-~~g~~---~~~i~~~l~~------------~~~~il~---~~lsggq~qR~~i~~~~~~~~ll~~~~ 147 (218)
T 1z6g_A 87 EDFLEYDNYANN-FYGTL---KSEYDKAKEQ------------NKICLFE---MNINGVKQLKKSTHIKNALYIFIKPPS 147 (218)
T ss_dssp TCEEEEEEETTE-EEEEE---HHHHHHHHHT------------TCEEEEE---ECHHHHHHHTTCSSCCSCEEEEEECSC
T ss_pred cchhhhhhcccc-cCCCc---HHHHHHHHhC------------CCcEEEE---ecHHHHHHHHHHhcCCCcEEEEEeCcC
Confidence 333344 22322 3333333322 2222232 5799999999999 999999999
Q ss_pred EEEEeCCCCCCCHHhHHHHHHHHHHHhCCCeEEEEecCcchhhccCEEEEEeC
Q 000984 543 ILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHR 595 (1198)
Q Consensus 543 illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~~d~i~~l~~ 595 (1198)
+++|||||+++|.+++..+++.+....+++| ++| +..+|.|+++++
T Consensus 148 ~~~Lde~~~~~d~~~~~~i~~~l~~~~~~~~---~~h----~~~~d~iiv~~~ 193 (218)
T 1z6g_A 148 TDVLLSRLLTRNTENQEQIQKRMEQLNIELH---EAN----LLNFNLSIINDD 193 (218)
T ss_dssp HHHHHHHHHHTCCCCHHHHHHHHHHHHHHHH---HHT----TSCCSEEEECSS
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH---hhc----ccCCCEEEECCC
Confidence 9999999999999999999999988776767 677 577999988764
|
| >1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=99.86 E-value=3.4e-23 Score=214.58 Aligned_cols=147 Identities=17% Similarity=0.211 Sum_probs=108.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcceEEEcCCCCCCcccHHHHHhcCCCCCCHHHHH
Q 000984 414 TAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIR 493 (1198)
Q Consensus 414 ~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~Ni~~~~~~~~~~~~~ 493 (1198)
+++|+||||||||||+++|+|++. |.++|.+..+......+++++|++|++ +..+|+. +.-.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~-----i~~~g~~~~~~~~~~~~~~ig~~~~~~-----~~~~~~~-~~~~------- 63 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG-----KRAIGFWTEEVRDPETKKRTGFRIITT-----EGKKKIF-SSKF------- 63 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG-----GGEEEEEEEEEC------CCEEEEEET-----TCCEEEE-EETT-------
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC-----CcCCCEEhhhhccccccceeEEEeecC-----cHHHHHH-Hhhc-------
Confidence 689999999999999999999984 667777654443224567899999987 2223331 1100
Q ss_pred HHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHh-----hccCCCEEEEeC--CCCCCCHHhHHHHHHHHH
Q 000984 494 VATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARA-----ILKDPRILLLDE--ATSALDAESEKVVQEALD 566 (1198)
Q Consensus 494 ~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARa-----l~~~~~illlDe--~ts~lD~~~~~~i~~~i~ 566 (1198)
.+ .+..+++.+.+||||||||++|||| ++.+|+++|||| ||+++|+...+.+.+.++
T Consensus 64 --------------~~--~~~~~~~~~~~lSgG~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~~~~l~~~l~ 127 (178)
T 1ye8_A 64 --------------FT--SKKLVGSYGVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMH 127 (178)
T ss_dssp --------------CC--CSSEETTEEECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHHHT
T ss_pred --------------CC--ccccccccccCcCHHHHHHHHHHhhccccccccCCCEEEEeCCCCcccCCHHHHHHHHHHHh
Confidence 00 0134667778899999999999996 999999999999 999999999988888886
Q ss_pred HHhCCCeEEEEec---Ccchhhc-cCEEEEEeCCEEEE
Q 000984 567 RIMVNRTTVIVAH---RLSTVRN-ADMIAVIHRGKIVE 600 (1198)
Q Consensus 567 ~~~~~~t~i~itH---~~~~~~~-~d~i~~l~~G~i~~ 600 (1198)
+ .+.|+|+++| +.+.+.. +|+ .+|++.+
T Consensus 128 ~--~~~~~i~~~H~~h~~~~~~~i~~r----~~~~i~~ 159 (178)
T 1ye8_A 128 D--PNVNVVATIPIRDVHPLVKEIRRL----PGAVLIE 159 (178)
T ss_dssp C--TTSEEEEECCSSCCSHHHHHHHTC----TTCEEEE
T ss_pred c--CCCeEEEEEccCCCchHHHHHHhc----CCcEEEE
Confidence 6 4667999996 5566654 676 5677776
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.86 E-value=6.3e-22 Score=214.99 Aligned_cols=117 Identities=25% Similarity=0.407 Sum_probs=103.4
Q ss_pred EEEeeeeEECCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHhhcc
Q 000984 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMG 1122 (1198)
Q Consensus 1043 I~f~nVsf~Y~~~~~~~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~~i~l~~LR~~Is 1122 (1198)
|+++||+|+|+.+ +.++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+|| +|+
T Consensus 4 l~~~~l~~~y~~~-~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g-------------~i~ 69 (237)
T 2cbz_A 4 ITVRNATFTWARS-DPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKG-------------SVA 69 (237)
T ss_dssp EEEEEEEEESCTT-SCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSEEEEEEEEECS-------------CEE
T ss_pred EEEEEEEEEeCCC-CCceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECC-------------EEE
Confidence 8999999999632 34699999999999999999999999999999999999999999999999 499
Q ss_pred eeccccccccccHHHHHhcCCCCCCCHHHHHHHHHHcchHHHHHhccccccce
Q 000984 1123 LVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQVRTSR 1175 (1198)
Q Consensus 1123 iV~Qdp~LF~gTIreNI~~g~~~~~tdeei~~Al~~A~l~dfI~~LP~g~dt~ 1175 (1198)
+|||+|.+|+.|++|||.++. ...+++..++++.+++.+.+..+|.|++|.
T Consensus 70 ~v~Q~~~~~~~tv~enl~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 120 (237)
T 2cbz_A 70 YVPQQAWIQNDSLRENILFGC--QLEEPYYRSVIQACALLPDLEILPSGDRTE 120 (237)
T ss_dssp EECSSCCCCSEEHHHHHHTTS--CCCTTHHHHHHHHTTCHHHHTTSTTGGGSE
T ss_pred EEcCCCcCCCcCHHHHhhCcc--ccCHHHHHHHHHHHhhHHHHHhcccccccc
Confidence 999999999999999999974 234456677888888888888888887754
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} | Back alignment and structure |
|---|
Probab=99.85 E-value=3.2e-22 Score=221.16 Aligned_cols=138 Identities=21% Similarity=0.448 Sum_probs=112.6
Q ss_pred cEEEeeeeEECCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccC--CCChHHHHh
Q 000984 1042 EIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQ--KLQLKWLRQ 1119 (1198)
Q Consensus 1042 ~I~f~nVsf~Y~~~~~~~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~--~i~l~~LR~ 1119 (1198)
-|+++||+++|++. .++|+||||+|++||.+||+||||||||||+++|.|+++|++|+|++||.|+. +.+...+|+
T Consensus 7 ~l~i~~ls~~y~~~--~~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~ 84 (275)
T 3gfo_A 7 ILKVEELNYNYSDG--THALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIMKLRE 84 (275)
T ss_dssp EEEEEEEEEECTTS--CEEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCCSHHHHHHHHH
T ss_pred EEEEEEEEEEECCC--CeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeEEEECCEECCcccccHHHHhC
Confidence 48999999999642 35999999999999999999999999999999999999999999999999994 445667899
Q ss_pred hcceecccc--ccccccHHHHHhcCCC-CCCCH----HHHHHHHHHcchHHHHH----hccccccceeeeeec
Q 000984 1120 QMGLVSQEP--VLFNDTIRANIAYGKG-GDATE----AEIQAASEMANAHKFIC----SLQQVRTSRLLLVMI 1181 (1198)
Q Consensus 1120 ~IsiV~Qdp--~LF~gTIreNI~~g~~-~~~td----eei~~Al~~A~l~dfI~----~LP~g~dt~v~~~~~ 1181 (1198)
+|++|||+| .+|..|++|||.++.. ...+. +.+.++++..++.++.. +|..|-.-+|+++.+
T Consensus 85 ~ig~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~iAra 157 (275)
T 3gfo_A 85 SIGIVFQDPDNQLFSASVYQDVSFGAVNMKLPEDEIRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGV 157 (275)
T ss_dssp SEEEECSSGGGTCCSSBHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHH
T ss_pred cEEEEEcCcccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHHHHHHH
Confidence 999999998 5889999999987621 11233 45778888888876654 455566666665544
|
| >4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=99.85 E-value=1.2e-21 Score=216.24 Aligned_cols=137 Identities=23% Similarity=0.382 Sum_probs=116.9
Q ss_pred cEEEeeeeEECCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHhhc
Q 000984 1042 EIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQM 1121 (1198)
Q Consensus 1042 ~I~f~nVsf~Y~~~~~~~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~~i~l~~LR~~I 1121 (1198)
-|+++||+++|++ .++|+||||+|++||.+||+||||||||||+++|.|+++|++|+|.+||.|+.+.+.+.+|+.+
T Consensus 11 ~l~~~~l~~~~~~---~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~i 87 (266)
T 4g1u_C 11 LLEASHLHYHVQQ---QALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPKALARTR 87 (266)
T ss_dssp EEEEEEEEEEETT---EEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSCCSSCEEEETTEETTTSCHHHHHHHE
T ss_pred eEEEEeEEEEeCC---eeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCCHHHHhheE
Confidence 4899999999963 4699999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceecccccc-ccccHHHHHhcCCCC---CCCHHHHHHHHHHcchHHHH----Hhccccccceeeeeec
Q 000984 1122 GLVSQEPVL-FNDTIRANIAYGKGG---DATEAEIQAASEMANAHKFI----CSLQQVRTSRLLLVMI 1181 (1198)
Q Consensus 1122 siV~Qdp~L-F~gTIreNI~~g~~~---~~tdeei~~Al~~A~l~dfI----~~LP~g~dt~v~~~~~ 1181 (1198)
++|+|++.+ |..|++|||.++... ...++++.++++..++.++. .+|..|-.-+|+++.+
T Consensus 88 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~QRv~iAra 155 (266)
T 4g1u_C 88 AVMRQYSELAFPFSVSEVIQMGRAPYGGSQDRQALQQVMAQTDCLALAQRDYRVLSGGEQQRVQLARV 155 (266)
T ss_dssp EEECSCCCCCSCCBHHHHHHGGGTTSCSTTHHHHHHHHHHHTTCSTTTTSBGGGCCHHHHHHHHHHHH
T ss_pred EEEecCCccCCCCCHHHHHHhhhhhcCcHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHH
Confidence 999999976 788999999986321 22356788899998876654 4455666666666544
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.85 E-value=8e-22 Score=214.76 Aligned_cols=137 Identities=18% Similarity=0.352 Sum_probs=108.1
Q ss_pred cEEEeeeeEECCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHH-hh
Q 000984 1042 EIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLR-QQ 1120 (1198)
Q Consensus 1042 ~I~f~nVsf~Y~~~~~~~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~~i~l~~LR-~~ 1120 (1198)
-|+++||+++|++ .++|+||||+|++||.+||+||||||||||+++|.|+++|++|+|.+||.|+.+.+...++ ++
T Consensus 6 ~l~~~~l~~~y~~---~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 82 (240)
T 1ji0_A 6 VLEVQSLHVYYGA---IHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMG 82 (240)
T ss_dssp EEEEEEEEEEETT---EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHTT
T ss_pred eEEEEeEEEEECC---eeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCHHHHHhCC
Confidence 3899999999963 3699999999999999999999999999999999999999999999999999988877664 45
Q ss_pred cceeccccccccc-cHHHHHhcCCCCCCC----HHHHHHHHHHc-chHHHH----Hhccccccceeeeeec
Q 000984 1121 MGLVSQEPVLFND-TIRANIAYGKGGDAT----EAEIQAASEMA-NAHKFI----CSLQQVRTSRLLLVMI 1181 (1198)
Q Consensus 1121 IsiV~Qdp~LF~g-TIreNI~~g~~~~~t----deei~~Al~~A-~l~dfI----~~LP~g~dt~v~~~~~ 1181 (1198)
|++|||+|.+|.+ |++||+.++.....+ ++.+.++++.. ++.++. .+|..|-.-+++++.+
T Consensus 83 i~~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LSgGq~qrv~lAra 153 (240)
T 1ji0_A 83 IALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWIFSLFPRLKERLKQLGGTLSGGEQQMLAIGRA 153 (240)
T ss_dssp EEEECSSCCCCTTSBHHHHHHGGGTTCCCSSHHHHHHHHHHHHCHHHHTTTTSBSSSSCHHHHHHHHHHHH
T ss_pred EEEEecCCccCCCCcHHHHHHHhhhcCCCHHHHHHHHHHHHHHcccHhhHhcCChhhCCHHHHHHHHHHHH
Confidence 9999999999987 999999986311112 23345555555 355443 3455555555555443
|
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C | Back alignment and structure |
|---|
Probab=99.85 E-value=6.5e-22 Score=224.80 Aligned_cols=142 Identities=22% Similarity=0.352 Sum_probs=115.5
Q ss_pred ccEEEeeeeEECCCCC-CccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHH--
Q 000984 1041 GEIELHHVSFKYPSRP-DVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWL-- 1117 (1198)
Q Consensus 1041 G~I~f~nVsf~Y~~~~-~~~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~~i~l~~L-- 1117 (1198)
.-|+++||+++|+.+. +.++|+||||+|++||.+||+||||||||||+++|.|++.|++|+|.+||.|+..++...+
T Consensus 23 ~mi~v~~ls~~y~~~~~~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~G~~i~~~~~~~~~~ 102 (366)
T 3tui_C 23 HMIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTK 102 (366)
T ss_dssp CCEEEEEEEEEEECSSSEEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECSSCCHHHHHH
T ss_pred ceEEEEeEEEEeCCCCCCeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHH
Confidence 3599999999996432 2469999999999999999999999999999999999999999999999999999987654
Q ss_pred -Hhhcceeccccccccc-cHHHHHhcCCC-CCCC----HHHHHHHHHHcchHHHHHh----ccccccceeeeeecc
Q 000984 1118 -RQQMGLVSQEPVLFND-TIRANIAYGKG-GDAT----EAEIQAASEMANAHKFICS----LQQVRTSRLLLVMIP 1182 (1198)
Q Consensus 1118 -R~~IsiV~Qdp~LF~g-TIreNI~~g~~-~~~t----deei~~Al~~A~l~dfI~~----LP~g~dt~v~~~~~~ 1182 (1198)
|++|++|||++.||.. |++|||.++.. ...+ ++.+.++++..++.++..+ |..|-.-+|+++.+-
T Consensus 103 ~r~~Ig~v~Q~~~l~~~~TV~env~~~~~~~~~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqkQRVaIArAL 178 (366)
T 3tui_C 103 ARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARAL 178 (366)
T ss_dssp HHTTEEEECSSCCCCTTSCHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCCTTTSCHHHHHHHHHHHHT
T ss_pred HhCcEEEEeCCCccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHH
Confidence 7899999999999865 99999987521 1122 3457788999998776554 445666666655543
|
| >2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A | Back alignment and structure |
|---|
Probab=99.85 E-value=1.5e-23 Score=239.02 Aligned_cols=131 Identities=19% Similarity=0.237 Sum_probs=110.3
Q ss_pred cccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcceEEEcCCCCCCcccHHHHH
Q 000984 401 IFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNI 480 (1198)
Q Consensus 401 ~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~Ni 480 (1198)
+++++|+.+++|+.++|+||||||||||+++|+|+++|++|.|.++|.+ ++.....++.+++++
T Consensus 160 ~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~--e~~~~~~~~~i~~~~-------------- 223 (330)
T 2pt7_A 160 AISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTE--EIVFKHHKNYTQLFF-------------- 223 (330)
T ss_dssp HHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSC--CCCCSSCSSEEEEEC--------------
T ss_pred HHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCee--ccccccchhEEEEEe--------------
Confidence 7899999999999999999999999999999999999999999999865 233223445565553
Q ss_pred hcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhhccCCCEEEEeCCCCCCCHHhHHH
Q 000984 481 AYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKV 560 (1198)
Q Consensus 481 ~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal~~~~~illlDe~ts~lD~~~~~~ 560 (1198)
| |||+||++|||||.++|+++||||||+. .
T Consensus 224 ------------------------------g-------------gg~~~r~~la~aL~~~p~ilildE~~~~-------e 253 (330)
T 2pt7_A 224 ------------------------------G-------------GNITSADCLKSCLRMRPDRIILGELRSS-------E 253 (330)
T ss_dssp ------------------------------B-------------TTBCHHHHHHHHTTSCCSEEEECCCCST-------H
T ss_pred ------------------------------C-------------CChhHHHHHHHHhhhCCCEEEEcCCChH-------H
Confidence 0 8999999999999999999999999982 2
Q ss_pred HHHHHHHHhCCC-eEEEEecCcchhhccCEEEEEeCCE
Q 000984 561 VQEALDRIMVNR-TTVIVAHRLSTVRNADMIAVIHRGK 597 (1198)
Q Consensus 561 i~~~i~~~~~~~-t~i~itH~~~~~~~~d~i~~l~~G~ 597 (1198)
+.+.++.+..++ |+|+++|+.+....+||+++|++|+
T Consensus 254 ~~~~l~~~~~g~~tvi~t~H~~~~~~~~dri~~l~~g~ 291 (330)
T 2pt7_A 254 AYDFYNVLCSGHKGTLTTLHAGSSEEAFIRLANMSSSN 291 (330)
T ss_dssp HHHHHHHHHTTCCCEEEEEECSSHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHhcCCCEEEEEEcccHHHHHhhhheehhcCC
Confidence 445666655554 7999999999878899999998875
|
| >2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* | Back alignment and structure |
|---|
Probab=99.84 E-value=1.1e-21 Score=215.62 Aligned_cols=137 Identities=28% Similarity=0.436 Sum_probs=113.1
Q ss_pred cEEEeeeeEECCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccC--CCChHHHHh
Q 000984 1042 EIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQ--KLQLKWLRQ 1119 (1198)
Q Consensus 1042 ~I~f~nVsf~Y~~~~~~~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~--~i~l~~LR~ 1119 (1198)
-|+++||+++|++ .++|+||||+|++||.+||+||||||||||+++|.|+++|++|+|.+||.|+. ..+...+|+
T Consensus 24 ~l~i~~l~~~y~~---~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~ 100 (263)
T 2olj_A 24 MIDVHQLKKSFGS---LEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKVRE 100 (263)
T ss_dssp SEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEESSSTTCCHHHHHH
T ss_pred eEEEEeEEEEECC---EEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCEECCCccccHHHHhC
Confidence 4999999999953 36999999999999999999999999999999999999999999999999985 345667899
Q ss_pred hcceeccccccccc-cHHHHHhcCC--CCCCC----HHHHHHHHHHcchHHHHH----hccccccceeeeeec
Q 000984 1120 QMGLVSQEPVLFND-TIRANIAYGK--GGDAT----EAEIQAASEMANAHKFIC----SLQQVRTSRLLLVMI 1181 (1198)
Q Consensus 1120 ~IsiV~Qdp~LF~g-TIreNI~~g~--~~~~t----deei~~Al~~A~l~dfI~----~LP~g~dt~v~~~~~ 1181 (1198)
+|++|||++.+|.. |++|||.++. ....+ ++++.++++..++.++.. +|..|-.-+++++.+
T Consensus 101 ~i~~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~lAra 173 (263)
T 2olj_A 101 EVGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKDKAHAYPDSLSGGQAQRVAIARA 173 (263)
T ss_dssp HEEEECSSCCCCTTSCHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHH
T ss_pred cEEEEeCCCcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHH
Confidence 99999999999987 9999998752 11122 345788899999877644 566666666665543
|
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.84 E-value=1.3e-21 Score=214.40 Aligned_cols=137 Identities=17% Similarity=0.358 Sum_probs=114.1
Q ss_pred ccEEEeeeeEECCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHhh
Q 000984 1041 GEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQ 1120 (1198)
Q Consensus 1041 G~I~f~nVsf~Y~~~~~~~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~~i~l~~LR~~ 1120 (1198)
+.|+++||+++|++ .++|+||||+|++||.+||+||+|||||||+++|.|+++|++|+|.+||.++.+ ....+|++
T Consensus 14 ~~l~i~~l~~~y~~---~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~-~~~~~~~~ 89 (256)
T 1vpl_A 14 GAVVVKDLRKRIGK---KEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVE-EPHEVRKL 89 (256)
T ss_dssp CCEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTT-CHHHHHTT
T ss_pred CeEEEEEEEEEECC---EEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCc-cHHHHhhc
Confidence 56999999999953 469999999999999999999999999999999999999999999999999977 56678999
Q ss_pred cceeccccccccc-cHHHHHhcCCC-CCCC----HHHHHHHHHHcchHHHHH----hccccccceeeeeec
Q 000984 1121 MGLVSQEPVLFND-TIRANIAYGKG-GDAT----EAEIQAASEMANAHKFIC----SLQQVRTSRLLLVMI 1181 (1198)
Q Consensus 1121 IsiV~Qdp~LF~g-TIreNI~~g~~-~~~t----deei~~Al~~A~l~dfI~----~LP~g~dt~v~~~~~ 1181 (1198)
|++|||+|.+|.+ |++||+.++.. ...+ ++++.++++..++.++.. +|..|..-+++++.+
T Consensus 90 i~~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAra 160 (256)
T 1vpl_A 90 ISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKDRVSTYSKGMVRKLLIARA 160 (256)
T ss_dssp EEEECTTCCCCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCGGGGGSBGGGCCHHHHHHHHHHHH
T ss_pred EEEEcCCCCCCCCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHH
Confidence 9999999999887 99999987410 0122 246788899999877644 566676666666544
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=99.84 E-value=2.3e-21 Score=214.38 Aligned_cols=135 Identities=21% Similarity=0.400 Sum_probs=111.3
Q ss_pred EEEeeeeEECCCCCC--ccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHhh
Q 000984 1043 IELHHVSFKYPSRPD--VQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQ 1120 (1198)
Q Consensus 1043 I~f~nVsf~Y~~~~~--~~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~~i~l~~LR~~ 1120 (1198)
|+++||+++|+.+.. .++|+|+||+|++||.+||+||||||||||+++|.|+++|++|+|.+||.++.+. .+|++
T Consensus 3 l~~~~l~~~y~~~~~~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~---~~~~~ 79 (266)
T 2yz2_A 3 IEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGY---EIRRN 79 (266)
T ss_dssp EEEEEEEEEESTTSTTCEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECCHH---HHGGG
T ss_pred EEEEEEEEEecCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEECchH---Hhhhh
Confidence 799999999962111 4699999999999999999999999999999999999999999999999998753 78899
Q ss_pred cceecccc--ccccccHHHHHhcCCC----CCCCHHHHHHHHHHcchH--HHHHh----ccccccceeeeee
Q 000984 1121 MGLVSQEP--VLFNDTIRANIAYGKG----GDATEAEIQAASEMANAH--KFICS----LQQVRTSRLLLVM 1180 (1198)
Q Consensus 1121 IsiV~Qdp--~LF~gTIreNI~~g~~----~~~tdeei~~Al~~A~l~--dfI~~----LP~g~dt~v~~~~ 1180 (1198)
|++|||+| .+|..|++|||.++.. ....++++.++++..++. ++..+ |..|-.-+++++.
T Consensus 80 i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~qRv~lAr 151 (266)
T 2yz2_A 80 IGIAFQYPEDQFFAERVFDEVAFAVKNFYPDRDPVPLVKKAMEFVGLDFDSFKDRVPFFLSGGEKRRVAIAS 151 (266)
T ss_dssp EEEECSSGGGGCCCSSHHHHHHHTTTTTCTTSCSHHHHHHHHHHTTCCHHHHTTCCGGGSCHHHHHHHHHHH
T ss_pred EEEEeccchhhcCCCcHHHHHHHHHHhcCCHHHHHHHHHHHHHHcCcCCcccccCChhhCCHHHHHHHHHHH
Confidence 99999997 5788999999998631 122356789999999998 87655 4455555555543
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A | Back alignment and structure |
|---|
Probab=99.84 E-value=1.3e-21 Score=210.83 Aligned_cols=138 Identities=20% Similarity=0.245 Sum_probs=113.0
Q ss_pred cEEEeeeeEECCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHH---HH
Q 000984 1042 EIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKW---LR 1118 (1198)
Q Consensus 1042 ~I~f~nVsf~Y~~~~~~~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~~i~l~~---LR 1118 (1198)
-|+++||+++|++ .++|+|+||+|++||.+||+||||||||||+++|.|+++|++|+|.+||.|+.+.+... +|
T Consensus 4 ~l~~~~l~~~y~~---~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 80 (224)
T 2pcj_A 4 ILRAENIKKVIRG---YEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELSLLR 80 (224)
T ss_dssp EEEEEEEEEEETT---EEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSCCSEEEEEETTEECCSSCHHHHHHHH
T ss_pred EEEEEeEEEEECC---EeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHHHH
Confidence 3899999999963 46999999999999999999999999999999999999999999999999998887653 44
Q ss_pred -hhcceecccccccc-ccHHHHHhcCCC-CCC----CHHHHHHHHHHcchHHH----HHhccccccceeeeeecc
Q 000984 1119 -QQMGLVSQEPVLFN-DTIRANIAYGKG-GDA----TEAEIQAASEMANAHKF----ICSLQQVRTSRLLLVMIP 1182 (1198)
Q Consensus 1119 -~~IsiV~Qdp~LF~-gTIreNI~~g~~-~~~----tdeei~~Al~~A~l~df----I~~LP~g~dt~v~~~~~~ 1182 (1198)
++|++|||+|.+|. -|++||+.++.. ... .++++.++++..++.++ +.+|..|..-+++++.+-
T Consensus 81 ~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral 155 (224)
T 2pcj_A 81 NRKLGFVFQFHYLIPELTALENVIVPMLKMGKPKKEAKERGEYLLSELGLGDKLSRKPYELSGGEQQRVAIARAL 155 (224)
T ss_dssp HHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHT
T ss_pred hCcEEEEecCcccCCCCCHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHH
Confidence 78999999999886 499999987421 011 23567888998888665 445666777777665543
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C | Back alignment and structure |
|---|
Probab=99.84 E-value=3.7e-21 Score=209.82 Aligned_cols=133 Identities=17% Similarity=0.224 Sum_probs=115.0
Q ss_pred EEEeeeeEECCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHhhcc
Q 000984 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMG 1122 (1198)
Q Consensus 1043 I~f~nVsf~Y~~~~~~~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~~i~l~~LR~~Is 1122 (1198)
|+++||+++ ++|+|+||+|++||.+||+||+|||||||+++|.|+++|+ |+|.+||.++.+++...+|++|+
T Consensus 5 l~~~~l~~~-------~vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~-G~i~~~g~~~~~~~~~~~~~~i~ 76 (249)
T 2qi9_C 5 MQLQDVAES-------TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGK-GSIQFAGQPLEAWSATKLALHRA 76 (249)
T ss_dssp EEEEEEEET-------TTEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCE-EEEEETTEEGGGSCHHHHHHHEE
T ss_pred EEEEceEEE-------EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC-eEEEECCEECCcCCHHHHhceEE
Confidence 899999986 3899999999999999999999999999999999999999 99999999999999999999999
Q ss_pred eeccccccccc-cHHHHHhcCCCCCCCHHHHHHHHHHcchHHHHH----hccccccceeeeeeccc
Q 000984 1123 LVSQEPVLFND-TIRANIAYGKGGDATEAEIQAASEMANAHKFIC----SLQQVRTSRLLLVMIPW 1183 (1198)
Q Consensus 1123 iV~Qdp~LF~g-TIreNI~~g~~~~~tdeei~~Al~~A~l~dfI~----~LP~g~dt~v~~~~~~~ 1183 (1198)
+|||++.+|.+ |++|||.++.....+++++.++++..++.++.. +|..|-.-+++++.+--
T Consensus 77 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~ 142 (249)
T 2qi9_C 77 YLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVL 142 (249)
T ss_dssp EECSCCCCCTTCBHHHHHHTTCSSTTCHHHHHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHHHHHH
T ss_pred EECCCCccCCCCcHHHHHHHhhccCCcHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHH
Confidence 99999998875 999999987422224788999999999877654 56667666666655433
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.84 E-value=1.7e-21 Score=207.35 Aligned_cols=132 Identities=21% Similarity=0.377 Sum_probs=112.0
Q ss_pred cEEEeeeeEECCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHhhc
Q 000984 1042 EIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQM 1121 (1198)
Q Consensus 1042 ~I~f~nVsf~Y~~~~~~~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~~i~l~~LR~~I 1121 (1198)
.|+++||+++|+ + ++|+|+||+|++||.+||+||+|||||||+++|.|+++|++|+|.+||.++. .+|++|
T Consensus 10 ~l~~~~ls~~y~---~-~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~-----~~~~~i 80 (214)
T 1sgw_A 10 KLEIRDLSVGYD---K-PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPIT-----KVKGKI 80 (214)
T ss_dssp EEEEEEEEEESS---S-EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGG-----GGGGGE
T ss_pred eEEEEEEEEEeC---C-eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEhh-----hhcCcE
Confidence 599999999995 3 5999999999999999999999999999999999999999999999999986 368899
Q ss_pred ceeccccccccc-cHHHHHhcCCC--C-CCCHHHHHHHHHHcchHHH---HHhccccccceeeeeecc
Q 000984 1122 GLVSQEPVLFND-TIRANIAYGKG--G-DATEAEIQAASEMANAHKF---ICSLQQVRTSRLLLVMIP 1182 (1198)
Q Consensus 1122 siV~Qdp~LF~g-TIreNI~~g~~--~-~~tdeei~~Al~~A~l~df---I~~LP~g~dt~v~~~~~~ 1182 (1198)
++|||+|.+|.+ |++|||.++.. . ...++++.++++..++.++ +.+|..|..-+++++.+-
T Consensus 81 ~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~LSgGqkqrv~laraL 148 (214)
T 1sgw_A 81 FFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALESVEVLDLKKKLGELSQGTIRRVQLASTL 148 (214)
T ss_dssp EEECSSCCCCTTSBHHHHHHHHHHHTTCCCCHHHHHHHHHHTTCCCTTSBGGGSCHHHHHHHHHHHHT
T ss_pred EEEeCCCcCCCCCCHHHHHHHHHHhcCCchHHHHHHHHHHHcCCCcCCCChhhCCHHHHHHHHHHHHH
Confidence 999999999987 99999987511 1 2236788999999988654 445777777777666543
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.84 E-value=2.2e-21 Score=215.33 Aligned_cols=137 Identities=18% Similarity=0.284 Sum_probs=112.7
Q ss_pred cEEEeeeeEECCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccC--CCChHHHHh
Q 000984 1042 EIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQ--KLQLKWLRQ 1119 (1198)
Q Consensus 1042 ~I~f~nVsf~Y~~~~~~~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~--~i~l~~LR~ 1119 (1198)
-|+++||+++|++ .++|+||||+|++||++||+||||||||||+++|.|+++|++|+|.+||.|+. +.+...+|+
T Consensus 21 ~l~~~~l~~~y~~---~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~ 97 (279)
T 2ihy_A 21 LIQLDQIGRMKQG---KTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKMPGKVGYSAETVRQ 97 (279)
T ss_dssp EEEEEEEEEEETT---EEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTBCCC---CCHHHHHT
T ss_pred eEEEEeEEEEECC---EEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCeEEEECCEEcccccCCHHHHcC
Confidence 4999999999963 36999999999999999999999999999999999999999999999999998 788888999
Q ss_pred hcceecccccc-ccc--cHHHHHhcCCCC------CCC---HHHHHHHHHHcchHHHH----Hhccccccceeeeeec
Q 000984 1120 QMGLVSQEPVL-FND--TIRANIAYGKGG------DAT---EAEIQAASEMANAHKFI----CSLQQVRTSRLLLVMI 1181 (1198)
Q Consensus 1120 ~IsiV~Qdp~L-F~g--TIreNI~~g~~~------~~t---deei~~Al~~A~l~dfI----~~LP~g~dt~v~~~~~ 1181 (1198)
+|++|||++.+ |.. |++|||.++... ... ++++.++++..++.++. .+|..|-.-+|+++.+
T Consensus 98 ~i~~v~Q~~~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqRv~lAra 175 (279)
T 2ihy_A 98 HIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAKAQQYIGYLSTGEKQRVMIARA 175 (279)
T ss_dssp TEEEECHHHHTTSCTTSBHHHHHHTTC---------CCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHH
T ss_pred cEEEEEcCcccccCCCCCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHH
Confidence 99999999975 555 999999986311 112 24577888988887654 4566666666666544
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=7.2e-21 Score=209.47 Aligned_cols=137 Identities=14% Similarity=0.230 Sum_probs=112.3
Q ss_pred cEEEeeeeEECCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCCh-HHHHhh
Q 000984 1042 EIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQL-KWLRQQ 1120 (1198)
Q Consensus 1042 ~I~f~nVsf~Y~~~~~~~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~~i~l-~~LR~~ 1120 (1198)
-|+++||+++|++ .++|+||||+|++||.+||+||||||||||+++|.|+++|++|+|.+||.|+.+.+. +.+|++
T Consensus 7 ~l~i~~l~~~y~~---~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 83 (257)
T 1g6h_A 7 ILRTENIVKYFGE---FKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYG 83 (257)
T ss_dssp EEEEEEEEEEETT---EEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHT
T ss_pred EEEEeeeEEEECC---EeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCC
Confidence 3899999999963 369999999999999999999999999999999999999999999999999988765 346789
Q ss_pred cceecccccccc-ccHHHHHhcCCCC---C-----------CC----HHHHHHHHHHcchHHHH----Hhccccccceee
Q 000984 1121 MGLVSQEPVLFN-DTIRANIAYGKGG---D-----------AT----EAEIQAASEMANAHKFI----CSLQQVRTSRLL 1177 (1198)
Q Consensus 1121 IsiV~Qdp~LF~-gTIreNI~~g~~~---~-----------~t----deei~~Al~~A~l~dfI----~~LP~g~dt~v~ 1177 (1198)
|++|||++.+|. .|++|||.++... . .+ .+++.++++..++.++. .+|..|-.-+|+
T Consensus 84 i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkQrv~ 163 (257)
T 1g6h_A 84 IVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGELSGGQMKLVE 163 (257)
T ss_dssp EEECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHH
T ss_pred EEEEccCCccCCCCcHHHHHHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHcCCchhhCCCchhCCHHHHHHHH
Confidence 999999999886 5999999986321 1 11 24577888888886654 456666666666
Q ss_pred eeec
Q 000984 1178 LVMI 1181 (1198)
Q Consensus 1178 ~~~~ 1181 (1198)
++.+
T Consensus 164 iAra 167 (257)
T 1g6h_A 164 IGRA 167 (257)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6544
|
| >1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.83 E-value=5.1e-21 Score=210.97 Aligned_cols=136 Identities=21% Similarity=0.310 Sum_probs=112.0
Q ss_pred EEEeeeeEECCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCC----------C
Q 000984 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQK----------L 1112 (1198)
Q Consensus 1043 I~f~nVsf~Y~~~~~~~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~~----------i 1112 (1198)
|+++||+++|++ .++|+||||+|++||.+||+||||||||||+++|.|+++|++|+|.+||.|+.. +
T Consensus 7 l~i~~l~~~y~~---~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~ 83 (262)
T 1b0u_A 7 LHVIDLHKRYGG---HEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKVA 83 (262)
T ss_dssp EEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEES
T ss_pred EEEeeEEEEECC---EEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccccccccccccc
Confidence 899999999953 369999999999999999999999999999999999999999999999999962 4
Q ss_pred Ch---HHHHhhcceeccccccccc-cHHHHHhcCC--CCCCC----HHHHHHHHHHcchHHH-HH----hccccccceee
Q 000984 1113 QL---KWLRQQMGLVSQEPVLFND-TIRANIAYGK--GGDAT----EAEIQAASEMANAHKF-IC----SLQQVRTSRLL 1177 (1198)
Q Consensus 1113 ~l---~~LR~~IsiV~Qdp~LF~g-TIreNI~~g~--~~~~t----deei~~Al~~A~l~df-I~----~LP~g~dt~v~ 1177 (1198)
+. ..+|++|++|||++.+|.. |++|||.++. ....+ ++++.++++..++.++ .. +|..|-.-+|+
T Consensus 84 ~~~~~~~~~~~i~~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGq~qRv~ 163 (262)
T 1b0u_A 84 DKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYPVHLSGGQQQRVS 163 (262)
T ss_dssp CHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSCGGGSCHHHHHHHH
T ss_pred ChhhHHHHhcceEEEecCcccCCCCcHHHHHHhhHHHhcCCCHHHHHHHHHHHHHHcCCCchhhcCCcccCCHHHHHHHH
Confidence 43 4568899999999999977 9999998742 11122 3467889999999887 44 56666666666
Q ss_pred eeec
Q 000984 1178 LVMI 1181 (1198)
Q Consensus 1178 ~~~~ 1181 (1198)
++.+
T Consensus 164 lAra 167 (262)
T 1b0u_A 164 IARA 167 (262)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5543
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=99.83 E-value=3.2e-21 Score=219.17 Aligned_cols=137 Identities=30% Similarity=0.509 Sum_probs=112.2
Q ss_pred cEEEeeeeEECCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCC--CChHHHHh
Q 000984 1042 EIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQK--LQLKWLRQ 1119 (1198)
Q Consensus 1042 ~I~f~nVsf~Y~~~~~~~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~~--i~l~~LR~ 1119 (1198)
.|+++||+++|++ .++|+||||+|++||.+||+||||||||||+++|.|+++|++|+|.+||.|+.+ ......|+
T Consensus 4 ~l~i~~ls~~y~~---~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~i~~~~~~~~~~~r 80 (359)
T 3fvq_A 4 ALHIGHLSKSFQN---TPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVRER 80 (359)
T ss_dssp CEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEEETTEEEESSSCBCCGGGS
T ss_pred EEEEEeEEEEECC---EEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEECcccccccchhhC
Confidence 3899999999963 469999999999999999999999999999999999999999999999999933 23345678
Q ss_pred hcceeccccccccc-cHHHHHhcCCCC-CC----CHHHHHHHHHHcchHHHHH----hccccccceeeeeec
Q 000984 1120 QMGLVSQEPVLFND-TIRANIAYGKGG-DA----TEAEIQAASEMANAHKFIC----SLQQVRTSRLLLVMI 1181 (1198)
Q Consensus 1120 ~IsiV~Qdp~LF~g-TIreNI~~g~~~-~~----tdeei~~Al~~A~l~dfI~----~LP~g~dt~v~~~~~ 1181 (1198)
+|++|||++.||.. |++|||.|+... .. .++++.++++..++.++.. .|..|-.-+|++..+
T Consensus 81 ~ig~vfQ~~~l~p~ltV~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRValArA 152 (359)
T 3fvq_A 81 RLGYLVQEGVLFPHLTVYRNIAYGLGNGKGRTAQERQRIEAMLELTGISELAGRYPHELSGGQQQRAALARA 152 (359)
T ss_dssp CCEEECTTCCCCTTSCHHHHHHTTSTTSSCCSHHHHHHHHHHHHHHTCGGGTTSCGGGSCHHHHHHHHHHHH
T ss_pred CEEEEeCCCcCCCCCCHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHH
Confidence 99999999999964 999999997421 11 2356888999999887655 455566666666544
|
| >3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A | Back alignment and structure |
|---|
Probab=99.83 E-value=4e-21 Score=219.87 Aligned_cols=135 Identities=21% Similarity=0.380 Sum_probs=111.7
Q ss_pred cEEEeeeeEECCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHhhc
Q 000984 1042 EIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQM 1121 (1198)
Q Consensus 1042 ~I~f~nVsf~Y~~~~~~~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~~i~l~~LR~~I 1121 (1198)
.|+++||+++|+ +.++|+||||+|++||.+||+||||||||||+++|.|+++|++|+|.+||.|+.+.+.. +++|
T Consensus 3 ~l~~~~l~~~yg---~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~~~~~~~~--~r~i 77 (381)
T 3rlf_A 3 SVQLQNVTKAWG---EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPA--ERGV 77 (381)
T ss_dssp CEEEEEEEEEET---TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGG--GSCE
T ss_pred EEEEEeEEEEEC---CEEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCCCCCeEEEECCEECCCCCHH--HCCE
Confidence 389999999996 34699999999999999999999999999999999999999999999999999988776 4789
Q ss_pred ceeccccccccc-cHHHHHhcCCC-CCCC----HHHHHHHHHHcchHHHHHhc----cccccceeeeeec
Q 000984 1122 GLVSQEPVLFND-TIRANIAYGKG-GDAT----EAEIQAASEMANAHKFICSL----QQVRTSRLLLVMI 1181 (1198)
Q Consensus 1122 siV~Qdp~LF~g-TIreNI~~g~~-~~~t----deei~~Al~~A~l~dfI~~L----P~g~dt~v~~~~~ 1181 (1198)
++|+|++.||.. |++|||.|+.. ...+ ++.+.++++..++.++..+. ..|-.-+|++..+
T Consensus 78 g~VfQ~~~l~p~ltV~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~p~~LSGGqrQRVaiArA 147 (381)
T 3rlf_A 78 GMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRT 147 (381)
T ss_dssp EEECTTCCCCTTSCHHHHHTHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTCCGGGSCHHHHHHHHHHHH
T ss_pred EEEecCCcCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhHCCHHHHHHHHHHHH
Confidence 999999999965 99999998621 1123 34578889999988765544 4455555555443
|
| >1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=8.2e-23 Score=237.32 Aligned_cols=167 Identities=16% Similarity=0.177 Sum_probs=127.5
Q ss_pred CccccceeEEEeCCC--------------------EEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHH
Q 000984 399 EQIFSGFSISISSGT--------------------TAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWI 458 (1198)
Q Consensus 399 ~~~l~~i~l~i~~g~--------------------~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~ 458 (1198)
+.+|++|||++++|+ .++|+||||||||||+++|+|+++|++|+|.++|.++.
T Consensus 36 ~~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t------- 108 (413)
T 1tq4_A 36 QEILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVT------- 108 (413)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC-----------
T ss_pred HHHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecc-------
Confidence 458999999999999 99999999999999999999999999999999997653
Q ss_pred hcceEEEcCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChH--HHHHHhHHHh
Q 000984 459 RKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGG--QKQRIAIARA 536 (1198)
Q Consensus 459 r~~i~~v~Q~~~l~~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgG--qkqri~lARa 536 (1198)
| .++++|++...+.|++||+.++.+.. ++.+.++..++.+ .+..+ . |||| ||||++||||
T Consensus 109 ~--~~~v~q~~~~~~ltv~D~~g~~~~~~---~~~~~L~~~~L~~--------~~~~~----~-lS~G~~~kqrv~la~a 170 (413)
T 1tq4_A 109 M--ERHPYKHPNIPNVVFWDLPGIGSTNF---PPDTYLEKMKFYE--------YDFFI----I-ISATRFKKNDIDIAKA 170 (413)
T ss_dssp C--CCEEEECSSCTTEEEEECCCGGGSSC---CHHHHHHHTTGGG--------CSEEE----E-EESSCCCHHHHHHHHH
T ss_pred e--eEEeccccccCCeeehHhhcccchHH---HHHHHHHHcCCCc--------cCCeE----E-eCCCCccHHHHHHHHH
Confidence 1 27899998655789999987764322 2333344433211 12111 2 8999 9999999999
Q ss_pred hcc----------CCCEEEEeCCCCCCCHHhHHHHHHHHHHHh------C----CCeEEEEecCcch--hhc-cCEE
Q 000984 537 ILK----------DPRILLLDEATSALDAESEKVVQEALDRIM------V----NRTTVIVAHRLST--VRN-ADMI 590 (1198)
Q Consensus 537 l~~----------~~~illlDe~ts~lD~~~~~~i~~~i~~~~------~----~~t~i~itH~~~~--~~~-~d~i 590 (1198)
+.+ +|++++|||||++||+.+.+.+.+.++++. . .+++++.||.++. +.. +|+|
T Consensus 171 L~~~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I 247 (413)
T 1tq4_A 171 ISMMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKL 247 (413)
T ss_dssp HHHTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHH
T ss_pred HHhcCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCcCCccCHHHHHHHH
Confidence 999 999999999999999999888888777652 1 2456677898775 443 5554
|
| >2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=99.82 E-value=1.4e-20 Score=214.88 Aligned_cols=134 Identities=24% Similarity=0.404 Sum_probs=112.1
Q ss_pred EEEeeeeEECCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHhhcc
Q 000984 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMG 1122 (1198)
Q Consensus 1043 I~f~nVsf~Y~~~~~~~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~~i~l~~LR~~Is 1122 (1198)
|+++||+++|++ .++|+|+||+|++||.+||+||||||||||+++|.|+++|++|+|.+||.|+.+++.. |++|+
T Consensus 4 l~~~~l~~~y~~---~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~--~r~ig 78 (359)
T 2yyz_A 4 IRVVNLKKYFGK---VKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPK--YREVG 78 (359)
T ss_dssp EEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGG--GTTEE
T ss_pred EEEEEEEEEECC---EEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCCCCccEEEECCEECCCCChh--hCcEE
Confidence 899999999953 3699999999999999999999999999999999999999999999999999887754 67899
Q ss_pred eeccccccccc-cHHHHHhcCCCC-CCC----HHHHHHHHHHcchHHHHHh----ccccccceeeeeec
Q 000984 1123 LVSQEPVLFND-TIRANIAYGKGG-DAT----EAEIQAASEMANAHKFICS----LQQVRTSRLLLVMI 1181 (1198)
Q Consensus 1123 iV~Qdp~LF~g-TIreNI~~g~~~-~~t----deei~~Al~~A~l~dfI~~----LP~g~dt~v~~~~~ 1181 (1198)
+|||++.||.. |++|||.|+... ..+ ++++.++++..++.++..+ |..|-.-+|++..+
T Consensus 79 ~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSgGq~QRvalArA 147 (359)
T 2yyz_A 79 MVFQNYALYPHMTVFENIAFPLRARRISKDEVEKRVVEIARKLLIDNLLDRKPTQLSGGQQQRVALARA 147 (359)
T ss_dssp EECSSCCCCTTSCHHHHHHGGGSSSCSHHHHTTHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHH
T ss_pred EEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHH
Confidence 99999999965 999999987321 112 3468889999999877654 55565566665443
|
| >2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.82 E-value=8e-21 Score=217.12 Aligned_cols=135 Identities=30% Similarity=0.505 Sum_probs=111.9
Q ss_pred cEEEeeeeEECCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHhhc
Q 000984 1042 EIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQM 1121 (1198)
Q Consensus 1042 ~I~f~nVsf~Y~~~~~~~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~~i~l~~LR~~I 1121 (1198)
.|+++||+++|++ .++|+||||+|++||.+||+||||||||||+++|.|+++|++|+|.+||.|+.+++.. +++|
T Consensus 3 ~l~~~~l~~~y~~---~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~--~r~i 77 (362)
T 2it1_A 3 EIKLENIVKKFGN---FTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPK--DRNV 77 (362)
T ss_dssp CEEEEEEEEESSS---SEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGG--GTTE
T ss_pred EEEEEeEEEEECC---EEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHh--HCcE
Confidence 3899999999953 3699999999999999999999999999999999999999999999999999887764 5789
Q ss_pred ceeccccccccc-cHHHHHhcCCC-CCCC----HHHHHHHHHHcchHHHHH----hccccccceeeeeec
Q 000984 1122 GLVSQEPVLFND-TIRANIAYGKG-GDAT----EAEIQAASEMANAHKFIC----SLQQVRTSRLLLVMI 1181 (1198)
Q Consensus 1122 siV~Qdp~LF~g-TIreNI~~g~~-~~~t----deei~~Al~~A~l~dfI~----~LP~g~dt~v~~~~~ 1181 (1198)
++|||++.||.. |++|||.|+.. ...+ ++++.++++..++.++.. +|..|-.-+|++..+
T Consensus 78 g~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArA 147 (362)
T 2it1_A 78 GLVFQNWALYPHMTVYKNIAFPLELRKAPREEIDKKVREVAKMLHIDKLLNRYPWQLSGGQQQRVAIARA 147 (362)
T ss_dssp EEECTTCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHH
T ss_pred EEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhhCChhhCCHHHHHHHHHHHH
Confidence 999999999975 99999998621 0122 346788999999877655 455566666665543
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} | Back alignment and structure |
|---|
Probab=99.82 E-value=1e-20 Score=215.27 Aligned_cols=137 Identities=26% Similarity=0.457 Sum_probs=112.8
Q ss_pred ccEEEeeeeEECCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHhh
Q 000984 1041 GEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQ 1120 (1198)
Q Consensus 1041 G~I~f~nVsf~Y~~~~~~~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~~i~l~~LR~~ 1120 (1198)
..|+++||+++|++ +.++|+||||+|++||.+||+||||||||||+++|.|+++|++|+|.+||.|+.+.+. .|++
T Consensus 13 ~~l~~~~l~~~y~g--~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~--~~r~ 88 (355)
T 1z47_A 13 MTIEFVGVEKIYPG--GARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPP--QKRN 88 (355)
T ss_dssp EEEEEEEEEECCTT--STTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCG--GGSS
T ss_pred ceEEEEEEEEEEcC--CCEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECCcCCh--hhCc
Confidence 46999999999941 2359999999999999999999999999999999999999999999999999987654 4789
Q ss_pred cceeccccccccc-cHHHHHhcCCC-CCCC----HHHHHHHHHHcchHHHHHh----ccccccceeeeeec
Q 000984 1121 MGLVSQEPVLFND-TIRANIAYGKG-GDAT----EAEIQAASEMANAHKFICS----LQQVRTSRLLLVMI 1181 (1198)
Q Consensus 1121 IsiV~Qdp~LF~g-TIreNI~~g~~-~~~t----deei~~Al~~A~l~dfI~~----LP~g~dt~v~~~~~ 1181 (1198)
|++|||++.||.. |++|||.|+.. ...+ ++++.++++..++.++..+ |..|-.-+|+++.+
T Consensus 89 ig~v~Q~~~l~~~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRvalArA 159 (355)
T 1z47_A 89 VGLVFQNYALFQHMTVYDNVSFGLREKRVPKDEMDARVRELLRFMRLESYANRFPHELSGGQQQRVALARA 159 (355)
T ss_dssp EEEECGGGCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHH
T ss_pred EEEEecCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHH
Confidence 9999999999975 99999998521 0112 3568889999999877654 55566666665543
|
| >1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=1.7e-20 Score=215.12 Aligned_cols=135 Identities=21% Similarity=0.396 Sum_probs=107.6
Q ss_pred cEEEeeeeEECCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHhhc
Q 000984 1042 EIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQM 1121 (1198)
Q Consensus 1042 ~I~f~nVsf~Y~~~~~~~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~~i~l~~LR~~I 1121 (1198)
.|+++||+++|++ .++|+|+||+|++||.+||+||||||||||+++|.|+++|++|+|.+||.|+.+++.. |++|
T Consensus 11 ~l~~~~l~~~y~~---~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~--~r~i 85 (372)
T 1v43_A 11 EVKLENLTKRFGN---FTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPK--DRNI 85 (372)
T ss_dssp CEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGG--GGTE
T ss_pred eEEEEEEEEEECC---EEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCCCChh--hCcE
Confidence 4999999999953 4699999999999999999999999999999999999999999999999999887754 6789
Q ss_pred ceeccccccccc-cHHHHHhcCCCC-CCC----HHHHHHHHHHcchHHHHH----hccccccceeeeeec
Q 000984 1122 GLVSQEPVLFND-TIRANIAYGKGG-DAT----EAEIQAASEMANAHKFIC----SLQQVRTSRLLLVMI 1181 (1198)
Q Consensus 1122 siV~Qdp~LF~g-TIreNI~~g~~~-~~t----deei~~Al~~A~l~dfI~----~LP~g~dt~v~~~~~ 1181 (1198)
++|||++.||.. |++|||.|+... ..+ ++++.++++..++.++.. +|..|-.-+|++..+
T Consensus 86 g~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArA 155 (372)
T 1v43_A 86 SMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRVAVARA 155 (372)
T ss_dssp EEEEC------CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCGGGTTSCTTTCCSSCHHHHHHHHH
T ss_pred EEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHH
Confidence 999999999965 999999997421 123 245788999999987755 455666666666543
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 | Back alignment and structure |
|---|
Probab=99.81 E-value=1.2e-20 Score=214.84 Aligned_cols=133 Identities=23% Similarity=0.437 Sum_probs=111.2
Q ss_pred EEEeeeeEECCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHhhcc
Q 000984 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMG 1122 (1198)
Q Consensus 1043 I~f~nVsf~Y~~~~~~~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~~i~l~~LR~~Is 1122 (1198)
|+++||+++|+ +. +|+|+||+|++||.+||+||||||||||+++|.|+++|++|+|.+||.|+.+++. .|++|+
T Consensus 2 l~~~~l~~~y~---~~-~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~--~~r~ig 75 (348)
T 3d31_A 2 IEIESLSRKWK---NF-SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSP--EKHDIA 75 (348)
T ss_dssp EEEEEEEEECS---SC-EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCH--HHHTCE
T ss_pred EEEEEEEEEEC---CE-EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCEECCCCch--hhCcEE
Confidence 78999999995 34 9999999999999999999999999999999999999999999999999987554 578999
Q ss_pred eeccccccccc-cHHHHHhcCCC--CCCCHHHHHHHHHHcchHHHHHh----ccccccceeeeeec
Q 000984 1123 LVSQEPVLFND-TIRANIAYGKG--GDATEAEIQAASEMANAHKFICS----LQQVRTSRLLLVMI 1181 (1198)
Q Consensus 1123 iV~Qdp~LF~g-TIreNI~~g~~--~~~tdeei~~Al~~A~l~dfI~~----LP~g~dt~v~~~~~ 1181 (1198)
+|||++.||.. |++|||.|+.. ....++++.++++..++.++..+ |..|-.-+|++..+
T Consensus 76 ~v~Q~~~l~~~ltv~enl~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSgGq~QRvalAra 141 (348)
T 3d31_A 76 FVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEHLLDRNPLTLSGGEQQRVALARA 141 (348)
T ss_dssp EECTTCCCCTTSCHHHHHHHHHHHHCCCCHHHHHHHHHHTTCTTTTTSCGGGSCHHHHHHHHHHHH
T ss_pred EEecCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHH
Confidence 99999999976 99999998621 01123788999999998776554 55565566665543
|
| >2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.81 E-value=2.5e-22 Score=236.58 Aligned_cols=194 Identities=16% Similarity=0.158 Sum_probs=155.9
Q ss_pred ccEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCe---ecCCcC----
Q 000984 382 GDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGI---NLKEFQ---- 454 (1198)
Q Consensus 382 g~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~---~~~~~~---- 454 (1198)
..++++|+++.|+. +..+|+++ |++.+||+++|+||||||||||+++|.|+.+|+.|.|.++|. ++.++.
T Consensus 130 ~~l~~~~v~~~~~t--g~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~~G~i~~~G~r~~ev~~~~~~~~ 206 (438)
T 2dpy_A 130 NPLQRTPIEHVLDT--GVRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTRADVIVVGLIGERGREVKDFIENIL 206 (438)
T ss_dssp CTTTSCCCCSBCCC--SCHHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHHTTT
T ss_pred CceEEeccceecCC--CceEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEeceecHHHHHHHHhhc
Confidence 45889999999963 35699999 999999999999999999999999999999999999999998 554432
Q ss_pred -HHHHhcceEEEcCC-C-CCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccc-hhcCCCCCCChHHHHH
Q 000984 455 -LQWIRKKIGLVSQE-P-VLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDT-LVGEHGTQLSGGQKQR 530 (1198)
Q Consensus 455 -~~~~r~~i~~v~Q~-~-~l~~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t-~v~~~g~~lSgGqkqr 530 (1198)
...+++.++|++|+ . ....-|+.+|+.+.. ++... .+.+. .+-+...+||+|| ||
T Consensus 207 ~~~~l~r~i~~v~q~~~~~~~~~~v~~~~~~~a------e~~~~--------------~~~~v~~~ld~l~~lS~g~-qr 265 (438)
T 2dpy_A 207 GPDGRARSVVIAAPADVSPLLRMQGAAYATRIA------EDFRD--------------RGQHVLLIMDSLTRYAMAQ-RE 265 (438)
T ss_dssp HHHHHHTEEEEEECTTSCHHHHHHHHHHHHHHH------HHHHT--------------TTCEEEEEEECHHHHHHHH-HH
T ss_pred cccccCceEEEEECCCCCHHHHHHHHHHHHHHH------HHHHh--------------CCCCHHHHHHhHHHHHHHH-HH
Confidence 35678899999995 3 334679999988631 11110 01110 1113356799999 99
Q ss_pred HhHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhC-----CC-----eEEEEecCcchhhccCEEEEEeCCEEEE
Q 000984 531 IAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMV-----NR-----TTVIVAHRLSTVRNADMIAVIHRGKIVE 600 (1198)
Q Consensus 531 i~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~-----~~-----t~i~itH~~~~~~~~d~i~~l~~G~i~~ 600 (1198)
++|| +.+|++ |+++|+.+...+.+.++++.+ ++ |++++||+++ ...||++++|.+|+|+.
T Consensus 266 vslA---l~~p~~------t~glD~~~~~~l~~ll~r~~~~~~~~GsiT~~~tVlv~tHdl~-~~iad~v~~l~dG~Ivl 335 (438)
T 2dpy_A 266 IALA---IGEPPA------TKGYPPSVFAKLPALVERAGNGIHGGGSITAFYTVLTEGDDQQ-DPIADSARAILDGHIVL 335 (438)
T ss_dssp HHHH---TTCCCC------SSSCCTTHHHHHHHHHTTCSCCSTTSCEEEEEEEEECSSSCSC-CHHHHHHHHHSSEEEEE
T ss_pred HHHH---hCCCcc------cccCCHHHHHHHHHHHHHHHhccCCCCcccceeEEEEeCCCcc-chhhceEEEEeCcEEEE
Confidence 9999 889988 999999999999999988754 43 8999999999 67799999999999999
Q ss_pred ecChhhHhc
Q 000984 601 KGTHSKLVE 609 (1198)
Q Consensus 601 ~g~~~~l~~ 609 (1198)
.|++.++..
T Consensus 336 ~~~~~~~~~ 344 (438)
T 2dpy_A 336 SRRLAEAGH 344 (438)
T ss_dssp CHHHHHTTC
T ss_pred eCCHHHccC
Confidence 999988754
|
| >2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=2.8e-22 Score=223.35 Aligned_cols=157 Identities=15% Similarity=0.231 Sum_probs=127.1
Q ss_pred CcCHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCcccCCcccEEEeeeeEECCCC
Q 000984 976 KATFSDVFKVFFSLTMTAIGISQSSSFSSDSNKAKSAAASIFAIIDRESKIDPSDESGTILEDVKGEIELHHVSFKYPSR 1055 (1198)
Q Consensus 976 ~~t~g~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~~~~~~G~I~f~nVsf~Y~~~ 1055 (1198)
..+.+...+|+.+... ..++..+..+...++++..+.+|+.++++.+++..... . ..++..+.|+|+||+|+|+
T Consensus 39 ~~~~~n~~afl~~~~q-~~~v~~~~~~~~~~~~a~~a~~ri~~~l~~~~~~~~~~--~-~~~~~~~~i~~~~vs~~y~-- 112 (305)
T 2v9p_A 39 AGSDSNARAFLATNSQ-AKHVKDCATMVRHYLRAETQALSMPAYIKARCKLATGE--G-SWKSILTFFNYQNIELITF-- 112 (305)
T ss_dssp TTTCHHHHHHTTCTTH-HHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHCCSS--C-CTHHHHHHHHHTTCCHHHH--
T ss_pred cCccHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCC--C-cccccCCeEEEEEEEEEcC--
Confidence 4455677777766555 57889999999999999999999999998654422111 1 1112235699999999995
Q ss_pred CCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHhhcceeccccccccccH
Q 000984 1056 PDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTI 1135 (1198)
Q Consensus 1056 ~~~~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~~i~l~~LR~~IsiV~Qdp~LF~gTI 1135 (1198)
.++|+|+||+|++|+++|||||||||||||+++|+|+| +|+| +++|+|+|.||++|+
T Consensus 113 --~~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~---~G~I------------------~~~v~q~~~lf~~ti 169 (305)
T 2v9p_A 113 --INALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL---GGSV------------------LSFANHKSHFWLASL 169 (305)
T ss_dssp --HHHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH---TCEE------------------ECGGGTTSGGGGGGG
T ss_pred --hhhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc---CceE------------------EEEecCccccccccH
Confidence 36999999999999999999999999999999999999 7999 467899999999999
Q ss_pred HH-HHhcCCCCCCCHHHHHHHHHHcchHHHHHh-cccccc
Q 000984 1136 RA-NIAYGKGGDATEAEIQAASEMANAHKFICS-LQQVRT 1173 (1198)
Q Consensus 1136 re-NI~~g~~~~~tdeei~~Al~~A~l~dfI~~-LP~g~d 1173 (1198)
++ ||.|++ ++++ +++++|+. ||+|+|
T Consensus 170 ~~~ni~~~~--~~~~----------~~~~~i~~~L~~gld 197 (305)
T 2v9p_A 170 ADTRAALVD--DATH----------ACWRYFDTYLRNALD 197 (305)
T ss_dssp TTCSCEEEE--EECH----------HHHHHHHHTTTGGGG
T ss_pred HHHhhccCc--cccH----------HHHHHHHHHhHccCC
Confidence 98 999973 4554 45778888 999987
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=3.3e-20 Score=206.72 Aligned_cols=115 Identities=22% Similarity=0.404 Sum_probs=91.9
Q ss_pred cccEEEeeeeEECCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHh
Q 000984 1040 KGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQ 1119 (1198)
Q Consensus 1040 ~G~I~f~nVsf~Y~~~~~~~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~~i~l~~LR~ 1119 (1198)
.+.|+++||+|+| .++|+|+||+|++||++||+||+|||||||+++|.|+++|++|+|.+||
T Consensus 38 ~~~l~~~~l~~~~-----~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g------------- 99 (290)
T 2bbs_A 38 DDSLSFSNFSLLG-----TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG------------- 99 (290)
T ss_dssp ------------C-----CCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSCEEEEEEECCS-------------
T ss_pred CceEEEEEEEEcC-----ceEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECC-------------
Confidence 3569999999965 2499999999999999999999999999999999999999999999998
Q ss_pred hcceeccccccccccHHHHHhcCCCCCCCHHHHHHHHHHcchHHHHHhccccccce
Q 000984 1120 QMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQVRTSR 1175 (1198)
Q Consensus 1120 ~IsiV~Qdp~LF~gTIreNI~~g~~~~~tdeei~~Al~~A~l~dfI~~LP~g~dt~ 1175 (1198)
+|++|||+|.+|++|++|||. +. ...+..+.++++..++.+++..+|++++|.
T Consensus 100 ~i~~v~Q~~~l~~~tv~enl~-~~--~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~ 152 (290)
T 2bbs_A 100 RISFCSQNSWIMPGTIKENII-GV--SYDEYRYRSVIKACQLEEDISKFAEKDNIV 152 (290)
T ss_dssp CEEEECSSCCCCSSBHHHHHH-TT--CCCHHHHHHHHHHTTCHHHHHTSTTGGGCB
T ss_pred EEEEEeCCCccCcccHHHHhh-Cc--ccchHHHHHHHHHhChHHHHHhccccccch
Confidence 499999999999999999998 63 234556677888889999999999888764
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.81 E-value=1.4e-20 Score=204.26 Aligned_cols=131 Identities=22% Similarity=0.385 Sum_probs=108.5
Q ss_pred EEEeeeeEECCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHhhcc
Q 000984 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMG 1122 (1198)
Q Consensus 1043 I~f~nVsf~Y~~~~~~~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~~i~l~~LR~~Is 1122 (1198)
|+++||+++|+ + +|+||||+|++ |.+||+||||||||||+++|.|+++|++|+|.+||.|+.+.+ ..|++|+
T Consensus 2 l~~~~l~~~y~---~--~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~--~~~~~i~ 73 (240)
T 2onk_A 2 FLKVRAEKRLG---N--FRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLP--PERRGIG 73 (240)
T ss_dssp CEEEEEEEEET---T--EEEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSC--TTTSCCB
T ss_pred EEEEEEEEEeC---C--EEeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCc--hhhCcEE
Confidence 68999999994 2 59999999999 999999999999999999999999999999999999997643 4578999
Q ss_pred eeccccccccc-cHHHHHhcCCCCC---CCHHHHHHHHHHcchHHHH----Hhccccccceeeeeec
Q 000984 1123 LVSQEPVLFND-TIRANIAYGKGGD---ATEAEIQAASEMANAHKFI----CSLQQVRTSRLLLVMI 1181 (1198)
Q Consensus 1123 iV~Qdp~LF~g-TIreNI~~g~~~~---~tdeei~~Al~~A~l~dfI----~~LP~g~dt~v~~~~~ 1181 (1198)
+|||++.+|.. |++||+.++.... ..++++.++++..++.++. .+|..|..-+++++.+
T Consensus 74 ~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAra 140 (240)
T 2onk_A 74 FVPQDYALFPHLSVYRNIAYGLRNVERVERDRRVREMAEKLGIAHLLDRKPARLSGGERQRVALARA 140 (240)
T ss_dssp CCCSSCCCCTTSCHHHHHHTTCTTSCHHHHHHHHHHHHHTTTCTTTTTCCGGGSCHHHHHHHHHHHH
T ss_pred EEcCCCccCCCCcHHHHHHHHHHHcCCchHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHH
Confidence 99999999987 9999999873210 1245688899999887664 4566666666665544
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=1.3e-20 Score=215.53 Aligned_cols=136 Identities=20% Similarity=0.358 Sum_probs=112.1
Q ss_pred EEEeeeeEECCCCCCcc--ccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCC---hHHH
Q 000984 1043 IELHHVSFKYPSRPDVQ--VFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQ---LKWL 1117 (1198)
Q Consensus 1043 I~f~nVsf~Y~~~~~~~--vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~~i~---l~~L 1117 (1198)
|+++||+++|+ +.+ +|+||||+|++||.+||+||||||||||+++|.|+++|++|+|.+||.|+.+.+ +...
T Consensus 4 l~i~~l~~~y~---~~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~~~~~ 80 (353)
T 1oxx_K 4 IIVKNVSKVFK---KGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPE 80 (353)
T ss_dssp EEEEEEEEEEG---GGTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGG
T ss_pred EEEEeEEEEEC---CEeeeeEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECcccccccCChh
Confidence 89999999995 245 999999999999999999999999999999999999999999999999997622 3345
Q ss_pred Hhhcceeccccccccc-cHHHHHhcCCCC-CCC----HHHHHHHHHHcchHHHHHh----ccccccceeeeeec
Q 000984 1118 RQQMGLVSQEPVLFND-TIRANIAYGKGG-DAT----EAEIQAASEMANAHKFICS----LQQVRTSRLLLVMI 1181 (1198)
Q Consensus 1118 R~~IsiV~Qdp~LF~g-TIreNI~~g~~~-~~t----deei~~Al~~A~l~dfI~~----LP~g~dt~v~~~~~ 1181 (1198)
|++|++|||++.||.. |++|||.|+... ..+ ++++.++++..++.++..+ |..|-.-+|++..+
T Consensus 81 ~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSGGq~QRvalAra 154 (353)
T 1oxx_K 81 DRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGAQQQRVALARA 154 (353)
T ss_dssp GSCEEEEETTSCCCTTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHH
T ss_pred hCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHH
Confidence 7899999999999976 999999987321 122 3467889999999877554 55566666666543
|
| >2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=1.5e-20 Score=206.14 Aligned_cols=136 Identities=24% Similarity=0.334 Sum_probs=106.0
Q ss_pred EEEeeeeEECCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcc--cCCCCCeEEECCcccCCCChHHH-Hh
Q 000984 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRF--YDPDAGHITLDGVEIQKLQLKWL-RQ 1119 (1198)
Q Consensus 1043 I~f~nVsf~Y~~~~~~~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~--ydp~~G~I~IDG~dI~~i~l~~L-R~ 1119 (1198)
|+++||+|+|++ .++|+||||+|++||.+||+||||||||||+++|.|+ ++|++|+|.+||.|+.+.+.... |+
T Consensus 4 l~~~~l~~~y~~---~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~~~~~~~~~~~~~ 80 (250)
T 2d2e_A 4 LEIRDLWASIDG---ETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSPDERARK 80 (250)
T ss_dssp EEEEEEEEEETT---EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEETTEECTTSCHHHHHHT
T ss_pred EEEEeEEEEECC---EEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEECCCCCHHHHHhC
Confidence 899999999963 4699999999999999999999999999999999999 89999999999999998887766 45
Q ss_pred hcceeccccccccc-cHHHHHhcCCC---C-CCC----HHHHHHHHHHcch-HHHHH----h-ccccccceeeeeec
Q 000984 1120 QMGLVSQEPVLFND-TIRANIAYGKG---G-DAT----EAEIQAASEMANA-HKFIC----S-LQQVRTSRLLLVMI 1181 (1198)
Q Consensus 1120 ~IsiV~Qdp~LF~g-TIreNI~~g~~---~-~~t----deei~~Al~~A~l-~dfI~----~-LP~g~dt~v~~~~~ 1181 (1198)
.+++|||+|.+|.+ |++||+.++.. . ... ++++.++++..++ .++.. + |..|-.-+++++.+
T Consensus 81 ~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGqkQrv~iAra 157 (250)
T 2d2e_A 81 GLFLAFQYPVEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYLSRYLNEGFSGGEKKRNEILQL 157 (250)
T ss_dssp TBCCCCCCCC-CCSCBHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGGGSBTTCC----HHHHHHHHHH
T ss_pred cEEEeccCCccccCCCHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHHHHHH
Confidence 69999999999986 99999986420 0 111 3457778888887 34443 3 66666666655443
|
| >2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.80 E-value=2.4e-19 Score=205.12 Aligned_cols=81 Identities=19% Similarity=0.250 Sum_probs=74.9
Q ss_pred CCChHHHHHHhHHHhhc---------cCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhCCCeEEEEecCcchhhccCEEEE
Q 000984 522 QLSGGQKQRIAIARAIL---------KDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAV 592 (1198)
Q Consensus 522 ~lSgGqkqri~lARal~---------~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~~d~i~~ 592 (1198)
.||||||||++|||+|. .+|+|||||||||+||+...+.+.+.+.++. .|+|++|| .+. .+|++++
T Consensus 265 ~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~~--qt~i~~th-~~~--~~~~i~~ 339 (359)
T 2o5v_A 265 YASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASVP--QAIVTGTE-LAP--GAALTLR 339 (359)
T ss_dssp HCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHSS--EEEEEESS-CCT--TCSEEEE
T ss_pred hCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhcC--cEEEEEEe-ccc--cCCEEEE
Confidence 59999999999999999 8999999999999999999999999998763 79999999 454 8999999
Q ss_pred EeCCEEEEecChhhH
Q 000984 593 IHRGKIVEKGTHSKL 607 (1198)
Q Consensus 593 l~~G~i~~~g~~~~l 607 (1198)
|++|++++.|+++++
T Consensus 340 l~~G~i~~~g~~~~~ 354 (359)
T 2o5v_A 340 AQAGRFTPVADEEMQ 354 (359)
T ss_dssp EETTEEEECCCTTTS
T ss_pred EECCEEEecCCHHHH
Confidence 999999999999887
|
| >1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A | Back alignment and structure |
|---|
Probab=99.80 E-value=3.1e-20 Score=213.58 Aligned_cols=135 Identities=21% Similarity=0.370 Sum_probs=110.6
Q ss_pred cEEEeeeeEECCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCC------CChH
Q 000984 1042 EIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQK------LQLK 1115 (1198)
Q Consensus 1042 ~I~f~nVsf~Y~~~~~~~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~~------i~l~ 1115 (1198)
.|+++||+++|++ .++|+||||+|++||.+||+||||||||||+++|.|+++|++|+|.+||.|+.+ ++..
T Consensus 3 ~l~~~~l~~~y~~---~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~~~~~~ 79 (372)
T 1g29_1 3 GVRLVDVWKVFGE---VTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPK 79 (372)
T ss_dssp EEEEEEEEEEETT---EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCGG
T ss_pred EEEEEeEEEEECC---EEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCCCCccEEEECCEECccccccccCCHh
Confidence 3899999999953 469999999999999999999999999999999999999999999999999976 5543
Q ss_pred HHHhhcceecccccccc-ccHHHHHhcCCC-CCCC----HHHHHHHHHHcchHHHHH----hccccccceeeeeec
Q 000984 1116 WLRQQMGLVSQEPVLFN-DTIRANIAYGKG-GDAT----EAEIQAASEMANAHKFIC----SLQQVRTSRLLLVMI 1181 (1198)
Q Consensus 1116 ~LR~~IsiV~Qdp~LF~-gTIreNI~~g~~-~~~t----deei~~Al~~A~l~dfI~----~LP~g~dt~v~~~~~ 1181 (1198)
|++|++|||++.||. -|++|||.|+.. ...+ ++++.++++..++.++.. +|..|-.-+|++..+
T Consensus 80 --~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArA 153 (372)
T 1g29_1 80 --DRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKPRELSGGQRQRVALGRA 153 (372)
T ss_dssp --GSSEEEECSCCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTTCCGGGSCHHHHHHHHHHHH
T ss_pred --HCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCCcccCCHHHHHHHHHHHH
Confidence 678999999999995 599999998621 1122 345788999999877654 455566666665543
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=99.78 E-value=5e-20 Score=202.40 Aligned_cols=133 Identities=16% Similarity=0.289 Sum_probs=110.1
Q ss_pred EEEeeeeEECCCC-CCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHhhc
Q 000984 1043 IELHHVSFKYPSR-PDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQM 1121 (1198)
Q Consensus 1043 I~f~nVsf~Y~~~-~~~~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~~i~l~~LR~~I 1121 (1198)
|+++||+++|++. ...++|+|+||+|+ ||++||+||||||||||+++|.|++ |++|+|.+||.|+.+. .. |++|
T Consensus 2 l~~~~l~~~y~~~~~~~~il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~~G~I~~~g~~~~~~--~~-~~~i 76 (263)
T 2pjz_A 2 IQLKNVGITLSGKGYERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-PYSGNIFINGMEVRKI--RN-YIRY 76 (263)
T ss_dssp EEEEEEEEEEEEETTEEEEEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS-CCEEEEEETTEEGGGC--SC-CTTE
T ss_pred EEEEEEEEEeCCCCccceeEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC-CCCcEEEECCEECcch--HH-hhhe
Confidence 7899999999631 01469999999999 9999999999999999999999999 9999999999999765 33 8899
Q ss_pred c-eeccccccccccHHHHHhcCCC-CCCCHHHHHHHHHHcchH-HHH----Hhccccccceeeeeec
Q 000984 1122 G-LVSQEPVLFNDTIRANIAYGKG-GDATEAEIQAASEMANAH-KFI----CSLQQVRTSRLLLVMI 1181 (1198)
Q Consensus 1122 s-iV~Qdp~LF~gTIreNI~~g~~-~~~tdeei~~Al~~A~l~-dfI----~~LP~g~dt~v~~~~~ 1181 (1198)
+ +|||+|.+ +.|++|||.++.. .+..++++.++++..++. ++. .+|..|-.-+++++.+
T Consensus 77 ~~~v~Q~~~l-~~tv~enl~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqRv~lAra 142 (263)
T 2pjz_A 77 STNLPEAYEI-GVTVNDIVYLYEELKGLDRDLFLEMLKALKLGEEILRRKLYKLSAGQSVLVRTSLA 142 (263)
T ss_dssp EECCGGGSCT-TSBHHHHHHHHHHHTCCCHHHHHHHHHHTTCCGGGGGSBGGGSCHHHHHHHHHHHH
T ss_pred EEEeCCCCcc-CCcHHHHHHHhhhhcchHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHH
Confidence 9 99999999 9999999987521 134578899999999887 554 4566666666666544
|
| >3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.78 E-value=7.7e-21 Score=210.34 Aligned_cols=147 Identities=18% Similarity=0.171 Sum_probs=94.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcceEEEcCCCCCCc-ccHHHHHhcCCCCCC---H
Q 000984 414 TAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFT-GSIKDNIAYGKDDAT---T 489 (1198)
Q Consensus 414 ~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~~-~ti~~Ni~~~~~~~~---~ 489 (1198)
.++|+||||||||||+++|+|+..|++|+|.++|.++.. ...++.++|++|++.++. -||.||+.||..... .
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~---~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~ 80 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPK---TVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCW 80 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC------------CCC---CCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCc---ceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHH
Confidence 589999999999999999999999999999999988743 234578999999998875 599999998764322 1
Q ss_pred HHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh
Q 000984 490 EEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIM 569 (1198)
Q Consensus 490 ~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~ 569 (1198)
+.+.+... .++.. ... ..||||||||+++|||+.. +|+||||+++||+...+ .++.+.
T Consensus 81 ~~i~~~~~----~~~~~-------~~~----~~LS~G~~qrv~iaRal~~---lllldep~~gL~~lD~~----~l~~L~ 138 (270)
T 3sop_A 81 EPIEKYIN----EQYEK-------FLK----EEVNIARKKRIPDTRVHCC---LYFISPTGHSLRPLDLE----FMKHLS 138 (270)
T ss_dssp HHHHHHHH----HHHHH-------HHH----HHSCTTCCSSCCCCSCCEE---EEEECCCSSSCCHHHHH----HHHHHH
T ss_pred HHHHHHHH----HHHHh-------hhH----HhcCcccchhhhhheeeee---eEEEecCCCcCCHHHHH----HHHHHH
Confidence 22322222 12211 112 2599999999999999875 99999999999997632 333333
Q ss_pred CCCeEEEEecCcchhh
Q 000984 570 VNRTTVIVAHRLSTVR 585 (1198)
Q Consensus 570 ~~~t~i~itH~~~~~~ 585 (1198)
+..++|+|.|+.+.+.
T Consensus 139 ~~~~vI~Vi~K~D~lt 154 (270)
T 3sop_A 139 KVVNIIPVIAKADTMT 154 (270)
T ss_dssp TTSEEEEEETTGGGSC
T ss_pred hcCcEEEEEeccccCC
Confidence 3489999999987663
|
| >3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=2.8e-21 Score=218.11 Aligned_cols=175 Identities=14% Similarity=0.212 Sum_probs=125.7
Q ss_pred CcccEEEEeEEEEcCCCCCCccccceeEE-----------------------EeCCCEEEEEcCCCCcHHHHHHHHhccC
Q 000984 380 IRGDIELRDVYFSYPARPNEQIFSGFSIS-----------------------ISSGTTAALVGQSGSGKSTVISLIERFY 436 (1198)
Q Consensus 380 ~~g~i~~~~v~~~y~~~~~~~~l~~i~l~-----------------------i~~g~~~~ivG~~GsGKStl~~~l~g~~ 436 (1198)
..+.|+++||++.|. |+++++++. +++|+++||+||||||||||+++|.|++
T Consensus 40 ~~~~i~~~~v~~~y~-----p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~ivgI~G~sGsGKSTL~~~L~gll 114 (312)
T 3aez_A 40 LGEQIDLLEVEEVYL-----PLARLIHLQVAARQRLFAATAEFLGEPQQNPDRPVPFIIGVAGSVAVGKSTTARVLQALL 114 (312)
T ss_dssp TTCCCCHHHHHHTHH-----HHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSSSCCCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCeEEeeehhhhhh-----hHHHHHHHHHhhhhHHHHHHHHhhcccccccCCCCCEEEEEECCCCchHHHHHHHHHhhc
Confidence 345699999999993 577777765 8999999999999999999999999999
Q ss_pred CCCCCeEEECCeecCCcCHHHHhcceEEEcCCCCCCcccHHHHHhcCC----CC-CCHHHHHHHHHHhcHHHHHHhCCCC
Q 000984 437 DPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGK----DD-ATTEEIRVATELANAAKFIDKLPQG 511 (1198)
Q Consensus 437 ~~~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~Ni~~~~----~~-~~~~~~~~~~~~~~~~~~i~~l~~g 511 (1198)
+|..|. .++++|+|++.++..|+++|+.+.. +. .+.+.+. +.++.+..|
T Consensus 115 ~~~~G~-----------------~~v~~v~qd~~~~~~t~~e~~~~~~~~g~~~~~d~~~~~---------~~L~~l~~~ 168 (312)
T 3aez_A 115 ARWDHH-----------------PRVDLVTTDGFLYPNAELQRRNLMHRKGFPESYNRRALM---------RFVTSVKSG 168 (312)
T ss_dssp HTSTTC-----------------CCEEEEEGGGGBCCHHHHHHTTCTTCTTSGGGBCHHHHH---------HHHHHHHTT
T ss_pred cccCCC-----------------CeEEEEecCccCCcccHHHHHHHHHhcCCChHHHHHHHH---------HHHHHhCCC
Confidence 998664 3799999999999889999997532 11 1122222 233333334
Q ss_pred cc-chhcCCCCCCChHHHHHHhHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhCCCeEEEEecCcchhh--ccC
Q 000984 512 ID-TLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVR--NAD 588 (1198)
Q Consensus 512 ~~-t~v~~~g~~lSgGqkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~--~~d 588 (1198)
.. ..+ ..|||||+||+++|||++.+|+|+|||||++.+|+... .+.+.+ ..+|+|+|..+... ..+
T Consensus 169 ~~~~~~----~~lS~G~~qRv~~a~al~~~p~ilIlDep~~~~d~~~~-----~l~~~~--D~~I~V~a~~~~~~~R~i~ 237 (312)
T 3aez_A 169 SDYACA----PVYSHLHYDIIPGAEQVVRHPDILILEGLNVLQTGPTL-----MVSDLF--DFSLYVDARIEDIEQWYVS 237 (312)
T ss_dssp CSCEEE----EEEETTTTEEEEEEEEEECSCSEEEEECTTTTCCCSSC-----CGGGGC--SEEEEEEECHHHHHHHHHH
T ss_pred cccCCc----ccCChhhhhhhhhHHHhccCCCEEEECCccccCCcchH-----HHHHhc--CcEEEEECCHHHHHHHHHH
Confidence 32 332 47999999999999999999999999999999986321 122222 24466666665432 245
Q ss_pred EEEEEeCC
Q 000984 589 MIAVIHRG 596 (1198)
Q Consensus 589 ~i~~l~~G 596 (1198)
|.+.+.+|
T Consensus 238 R~~~~rd~ 245 (312)
T 3aez_A 238 RFLAMRTT 245 (312)
T ss_dssp HHHHHTTT
T ss_pred HHHHHHhc
Confidence 54444443
|
| >2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis} | Back alignment and structure |
|---|
Probab=99.77 E-value=1.2e-22 Score=234.82 Aligned_cols=206 Identities=15% Similarity=0.041 Sum_probs=144.0
Q ss_pred HHHHHHHhc-CCcCHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCcccCCcccE-
Q 000984 966 YAGARLVED-GKATFSDVFKVFFSLTMTAIGISQSSSFSSDSNKAKSAAASIFAIIDRESKIDPSDESGTILEDVKGEI- 1043 (1198)
Q Consensus 966 ~~g~~l~~~-g~~t~g~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~~~~~~G~I- 1043 (1198)
+.|.++... +.++.+.+..+..++.....+ .+....+.++....+.+|+..++ +|................+.+
T Consensus 53 ~~G~~~~~~~~~lt~~~l~~~~~~~~~~~~~--~l~~~~~~~~~~l~~~~Ri~~vl--~p~~~~~~~~~~ir~~~~~~it 128 (361)
T 2gza_A 53 RASAWEYYAVPNLDYEHLISLGTATARFVDQ--DISDSRPVLSAILPMGERIQIVR--PPACEHGTISVTIRKPSFTRRT 128 (361)
T ss_dssp ETTEEEEEECTTCCHHHHHHHHHHHHHHTTC--CCSSSSCEEEEECTTSCEEEEEC--TTTBCTTCCEEEEECCCCCCCC
T ss_pred ECCeEEEeCCCCCCHHHHHHHHHHHHHHcCC--ccCCCCCeEEEEcCCCcEEEEEe--cCccCCCCeEEEEEecCCCCCC
Confidence 445555555 789999999988877765544 23333333333444556777766 222211100000001113445
Q ss_pred --------EEeeeeEE---CCCCCCcccc---------ccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEE
Q 000984 1044 --------ELHHVSFK---YPSRPDVQVF---------RDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHIT 1103 (1198)
Q Consensus 1044 --------~f~nVsf~---Y~~~~~~~vL---------~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~ 1103 (1198)
+|+||+|+ |++. +.++| +++||.|++|+.++||||||||||||+++|.|+++|++|.|.
T Consensus 129 l~~l~~~g~f~~v~f~~~~Y~~~-~~~vL~~~~~~~~~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~~~g~I~ 207 (361)
T 2gza_A 129 LEDYAQQGFFKHVRPMSKSLTPF-EQELLALKEAGDYMSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIPFDQRLIT 207 (361)
T ss_dssp HHHHHHTTTTSCCCCSCSCCCHH-HHHHHHHHHHTCHHHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSCTTSCEEE
T ss_pred HHHHHhcCCcCccccccccccch-hHHHHhhhhhHHHHHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCCCCceEEE
Confidence 99999999 9632 23466 999999999999999999999999999999999999999999
Q ss_pred ECCcccCCCChHHHHhhcceec-ccccc---ccccHHHHHhcCCCCCCCHHHHHHHHHHcchHHHHHhccccccceeeee
Q 000984 1104 LDGVEIQKLQLKWLRQQMGLVS-QEPVL---FNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQVRTSRLLLV 1179 (1198)
Q Consensus 1104 IDG~dI~~i~l~~LR~~IsiV~-Qdp~L---F~gTIreNI~~g~~~~~tdeei~~Al~~A~l~dfI~~LP~g~dt~v~~~ 1179 (1198)
|+|. .++.+..+|+++++|+ |++.+ +..|+++||+++.. ..+|..+..+++.+.+++++..+|.|++|.+...
T Consensus 208 ie~~--~e~~~~~~~~~v~~v~~q~~~~~~~~~~t~~~~i~~~l~-~~pd~~l~~e~r~~~~~~~l~~l~~g~~~~l~t~ 284 (361)
T 2gza_A 208 IEDV--PELFLPDHPNHVHLFYPSEAKEEENAPVTAATLLRSCLR-MKPTRILLAELRGGEAYDFINVAASGHGGSITSC 284 (361)
T ss_dssp EESS--SCCCCTTCSSEEEEECC----------CCHHHHHHHHTT-SCCSEEEESCCCSTHHHHHHHHHHTTCCSCEEEE
T ss_pred ECCc--cccCccccCCEEEEeecCccccccccccCHHHHHHHHHh-cCCCEEEEcCchHHHHHHHHHHHhcCCCeEEEEE
Confidence 9985 5677777889999999 99987 89999999998743 4556556666777889999999999999876543
|
| >3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.77 E-value=2.2e-20 Score=209.76 Aligned_cols=174 Identities=17% Similarity=0.225 Sum_probs=123.9
Q ss_pred cceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcC----HHHH--hcceEEEcCCCC-CC-cc
Q 000984 403 SGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQ----LQWI--RKKIGLVSQEPV-LF-TG 474 (1198)
Q Consensus 403 ~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~----~~~~--r~~i~~v~Q~~~-l~-~~ 474 (1198)
+++||++++|++++|+|||||||||+++.|+|++.|.+|+|.++|.|+.... +..+ |..++|++|++. ++ ..
T Consensus 91 ~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~~~~~ 170 (302)
T 3b9q_A 91 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAAT 170 (302)
T ss_dssp CSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CCCHHH
T ss_pred cccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCccCHHH
Confidence 4578889999999999999999999999999999999999999999886653 2233 457999999997 66 46
Q ss_pred cHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhhccCCC--EEEEeCCCCC
Q 000984 475 SIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPR--ILLLDEATSA 552 (1198)
Q Consensus 475 ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal~~~~~--illlDe~ts~ 552 (1198)
|+++|+.++.....+ .. .++.. |...........|| |||++||||+..+|+ +|+|| ||++
T Consensus 171 ~v~e~l~~~~~~~~d---------~~---lldt~--gl~~~~~~~~~eLS---kqr~~iaral~~~P~e~lLvLD-ptsg 232 (302)
T 3b9q_A 171 VLSKAVKRGKEEGYD---------VV---LCDTS--GRLHTNYSLMEELI---ACKKAVGKIVSGAPNEILLVLD-GNTG 232 (302)
T ss_dssp HHHHHHHHHHHTTCS---------EE---EECCC--CCSSCCHHHHHHHH---HHHHHHHTTSTTCCSEEEEEEE-GGGG
T ss_pred HHHHHHHHHHHcCCc---------ch---HHhcC--CCCcchhHHHHHHH---HHHHHHHHhhccCCCeeEEEEe-CCCC
Confidence 999999864210000 00 01111 22111111122478 999999999999999 99999 9999
Q ss_pred CCHHhHHHHHHHHHHHhCCCeEEEEec---------Ccchhh-ccCEEEEEeCCEE
Q 000984 553 LDAESEKVVQEALDRIMVNRTTVIVAH---------RLSTVR-NADMIAVIHRGKI 598 (1198)
Q Consensus 553 lD~~~~~~i~~~i~~~~~~~t~i~itH---------~~~~~~-~~d~i~~l~~G~i 598 (1198)
+|+.... +.+.+ ..+.|+|++|| .++... ..+.|.++..|+.
T Consensus 233 lD~~~~~---~~~~~-~~g~t~iiiThlD~~~~~g~~l~~~~~~~~pi~~i~~Ge~ 284 (302)
T 3b9q_A 233 LNMLPQA---REFNE-VVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEA 284 (302)
T ss_dssp GGGHHHH---HHHHH-HTCCCEEEEECCSSCSCTHHHHHHHHHHCCCEEEEECSSS
T ss_pred cCHHHHH---HHHHH-hcCCCEEEEeCCCCCCccChheehHHHHCCCEEEEeCCCC
Confidence 9997542 12222 23789999999 333333 3678999998864
|
| >2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A | Back alignment and structure |
|---|
Probab=99.77 E-value=1.2e-19 Score=200.50 Aligned_cols=137 Identities=16% Similarity=0.249 Sum_probs=108.8
Q ss_pred cEEEeeeeEECCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcc--cCCCCCeEEECCcccCCCChHHH-H
Q 000984 1042 EIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRF--YDPDAGHITLDGVEIQKLQLKWL-R 1118 (1198)
Q Consensus 1042 ~I~f~nVsf~Y~~~~~~~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~--ydp~~G~I~IDG~dI~~i~l~~L-R 1118 (1198)
-|+++||+++|+ +.++|+||||+|++||.+||+||||||||||+++|.|+ ++|++|+|.+||.|+.+++.... |
T Consensus 20 ~l~~~~l~~~y~---~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~ 96 (267)
T 2zu0_C 20 MLSIKDLHVSVE---DKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPEDRAG 96 (267)
T ss_dssp CEEEEEEEEEET---TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEEGGGSCHHHHHH
T ss_pred eEEEEeEEEEEC---CEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCcCCHHHHhh
Confidence 499999999995 24699999999999999999999999999999999999 67899999999999998887766 4
Q ss_pred hhcceeccccccccc-cHHHHHhcCC--------CCCCCH----HHHHHHHHHcchH-HHH----H-hccccccceeeee
Q 000984 1119 QQMGLVSQEPVLFND-TIRANIAYGK--------GGDATE----AEIQAASEMANAH-KFI----C-SLQQVRTSRLLLV 1179 (1198)
Q Consensus 1119 ~~IsiV~Qdp~LF~g-TIreNI~~g~--------~~~~td----eei~~Al~~A~l~-dfI----~-~LP~g~dt~v~~~ 1179 (1198)
+.|++|||+|.+|.+ |+++|+.++. .+..+. +++.++++..++. ++. . +|..|..-+|+++
T Consensus 97 ~~i~~v~Q~~~l~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~QRv~iA 176 (267)
T 2zu0_C 97 EGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDIL 176 (267)
T ss_dssp HTEEEECSSCCCCTTCBHHHHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHHHHTTCCTTTTTSBTTTTCCHHHHHHHHHH
T ss_pred CCEEEEccCccccccccHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHHHH
Confidence 569999999999876 8999986531 111232 4577888888874 332 2 3666666666655
Q ss_pred ec
Q 000984 1180 MI 1181 (1198)
Q Consensus 1180 ~~ 1181 (1198)
.+
T Consensus 177 ra 178 (267)
T 2zu0_C 177 QM 178 (267)
T ss_dssp HH
T ss_pred HH
Confidence 43
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=99.77 E-value=2.3e-19 Score=196.53 Aligned_cols=125 Identities=22% Similarity=0.344 Sum_probs=102.2
Q ss_pred cEEEeeeeEECCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHhhc
Q 000984 1042 EIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQM 1121 (1198)
Q Consensus 1042 ~I~f~nVsf~Y~~~~~~~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~~i~l~~LR~~I 1121 (1198)
-|+++||+++|+. +.++|+|+||+|++||.+||+||||||||||+++|.|+++|++|+|. +|++|
T Consensus 4 ~l~i~~l~~~y~~--~~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~-------------~~~~i 68 (253)
T 2nq2_C 4 ALSVENLGFYYQA--ENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIE-------------VYQSI 68 (253)
T ss_dssp EEEEEEEEEEETT--TTEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSCCSEEEEE-------------ECSCE
T ss_pred eEEEeeEEEEeCC--CCeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEE-------------EeccE
Confidence 3899999999962 23699999999999999999999999999999999999999999998 46789
Q ss_pred ceeccccccc-cccHHHHHhcCCCC--------C-CCHHHHHHHHHHcchHHHHH----hccccccceeeeeec
Q 000984 1122 GLVSQEPVLF-NDTIRANIAYGKGG--------D-ATEAEIQAASEMANAHKFIC----SLQQVRTSRLLLVMI 1181 (1198)
Q Consensus 1122 siV~Qdp~LF-~gTIreNI~~g~~~--------~-~tdeei~~Al~~A~l~dfI~----~LP~g~dt~v~~~~~ 1181 (1198)
++|||+|.+| ..|++|||.++... . ..++++.++++..++.++.. +|..|-.-+++++.+
T Consensus 69 ~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAra 142 (253)
T 2nq2_C 69 GFVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLTHLAKREFTSLSGGQRQLILIARA 142 (253)
T ss_dssp EEECSCCCCSSCCBHHHHHHGGGGGGSCTTCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHH
T ss_pred EEEcCCCccCCCCCHHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHcCChHHhcCChhhCCHHHHHHHHHHHH
Confidence 9999999887 67999999986310 1 11356888999999887654 456666666665543
|
| >2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.75 E-value=9e-21 Score=194.24 Aligned_cols=111 Identities=20% Similarity=0.212 Sum_probs=87.9
Q ss_pred CEEEEEcCCCCcHHHHHHHHhccCCCC---CCeEEECCeecCCcC---HHHHh-cceE----EEcCCCCCCcccHHHHHh
Q 000984 413 TTAALVGQSGSGKSTVISLIERFYDPQ---AGEVLIDGINLKEFQ---LQWIR-KKIG----LVSQEPVLFTGSIKDNIA 481 (1198)
Q Consensus 413 ~~~~ivG~~GsGKStl~~~l~g~~~~~---~G~i~i~g~~~~~~~---~~~~r-~~i~----~v~Q~~~l~~~ti~~Ni~ 481 (1198)
++++|+|+||||||||+++|+|+++|. .|.|.+||.++.+++ .+.+| ++++ +++|++++| +++
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~i~~~~~~~~d~~r~~~ig~~~~~~~~~~~~~---i~~--- 76 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHGDFEIDKEGKDSWKIYNSGADVVIASPVKLAF---IRR--- 76 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC------------CHHHHHHHHTCEEEEECSSEEEE---EEE---
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCcccccCCccchhHHHHHhcCCceEEECCCcEEE---Eec---
Confidence 689999999999999999999999998 899999999988876 67888 4788 899999987 111
Q ss_pred cCCCCCCHHHHHHHHHHhcHHHHHHh-CCCCccchhcCCCCCCChHHHHHHhHHHhhccCCCEE
Q 000984 482 YGKDDATTEEIRVATELANAAKFIDK-LPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRIL 544 (1198)
Q Consensus 482 ~~~~~~~~~~~~~~~~~~~~~~~i~~-l~~g~~t~v~~~g~~lSgGqkqri~lARal~~~~~il 544 (1198)
+ +++ . .+++++++.. +| |+||.++|+ |||||||||+||||++++|+++
T Consensus 77 -~----~~~-~-----~a~l~~~i~~~l~-g~dt~i~Eg---lSgGq~qri~lARall~~p~i~ 125 (171)
T 2f1r_A 77 -V----SEE-E-----GNDLDWIYERYLS-DYDLVITEG---FSKAGKDRIVVVKKPEEVEHFR 125 (171)
T ss_dssp -C----CHH-H-----HTCHHHHHHHHTT-TCSEEEEES---CGGGCCCEEEECSSGGGGGGGC
T ss_pred -C----Chh-h-----hhCHHHHHHhhCC-CCCEEEECC---cCCCCCcEEEEEecccCCCccC
Confidence 1 111 1 6788999999 99 999999995 9999999999999999999874
|
| >1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A | Back alignment and structure |
|---|
Probab=99.74 E-value=1.6e-20 Score=200.51 Aligned_cols=168 Identities=16% Similarity=0.134 Sum_probs=105.7
Q ss_pred CccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcceEEEcCCCCCCc-ccHH
Q 000984 399 EQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFT-GSIK 477 (1198)
Q Consensus 399 ~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~~-~ti~ 477 (1198)
.++++| .++++||+++|+||||||||||+++|+|+++ .|.+++.....-.....++.++|++|++.+|. .|++
T Consensus 9 ~~~~~~--~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~----~i~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~ 82 (207)
T 1znw_A 9 KPTARG--QPAAVGRVVVLSGPSAVGKSTVVRCLRERIP----NLHFSVSATTRAPRPGEVDGVDYHFIDPTRFQQLIDQ 82 (207)
T ss_dssp ------------CCCEEEEECSTTSSHHHHHHHHHHHST----TCEECCCEESSCCCTTCCBTTTBEECCHHHHHHHHHT
T ss_pred CcCCCC--CCCCCCCEEEEECCCCCCHHHHHHHHHhhCC----ceEEcccccccCCcccccCCCeeEecCHHHHHHHHhc
Confidence 468888 7999999999999999999999999999985 34554422111111223568999999998774 4666
Q ss_pred HHHhcCC---C-----CCCHHHHHHHH----------HHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhhcc
Q 000984 478 DNIAYGK---D-----DATTEEIRVAT----------ELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILK 539 (1198)
Q Consensus 478 ~Ni~~~~---~-----~~~~~~~~~~~----------~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal~~ 539 (1198)
+|+.... . ....++..+.. +..++.+.....| ..|| |++.
T Consensus 83 ~~l~~~~~~~~n~~~~g~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----------~~lS-----------~l~~ 140 (207)
T 1znw_A 83 GELLEWAEIHGGLHRSGTLAQPVRAAAATGVPVLIEVDLAGARAIKKTMP-----------EAVT-----------VFLA 140 (207)
T ss_dssp TCEEEEEEEGGGTEEEEEEHHHHHHHHHHTCCEEEECCHHHHHHHHHHCT-----------TSEE-----------EEEE
T ss_pred CCceeehhhcCchhhcCCcHHHHHHHHHcCCeEEEEeCHHHHHHHHHhcC-----------CcEE-----------EEEE
Confidence 6663210 0 01122222221 1222222222222 2333 8999
Q ss_pred CCCEEEEeCCCCCC----CHHhHHHHHHHHHHHh--CCCeEEEEecCcchhhc-cCEEEEEe
Q 000984 540 DPRILLLDEATSAL----DAESEKVVQEALDRIM--VNRTTVIVAHRLSTVRN-ADMIAVIH 594 (1198)
Q Consensus 540 ~~~illlDe~ts~l----D~~~~~~i~~~i~~~~--~~~t~i~itH~~~~~~~-~d~i~~l~ 594 (1198)
+|++++|||||+++ |+...+.+.+.++++. .+.|+|+|||+++.+.. ||+|++|.
T Consensus 141 ~p~~~~LDep~~~l~~~~d~~~~~~l~~~l~~l~~~~g~tvi~vtHdl~~~~~~~d~i~~l~ 202 (207)
T 1znw_A 141 PPSWQDLQARLIGRGTETADVIQRRLDTARIELAAQGDFDKVVVNRRLESACAELVSLLVGT 202 (207)
T ss_dssp CSCHHHHHHHHHTTSCSCHHHHHHHHHHHHHHHHGGGGSSEEEECSSHHHHHHHHHHHHC--
T ss_pred CCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhccCcEEEECCCHHHHHHHHHHHHHhc
Confidence 99999999999998 5667778888887764 36899999999998865 99999984
|
| >2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.74 E-value=1.1e-19 Score=207.50 Aligned_cols=172 Identities=17% Similarity=0.226 Sum_probs=124.4
Q ss_pred ceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcC----HHHH--hcceEEEcCCCC-CC-ccc
Q 000984 404 GFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQ----LQWI--RKKIGLVSQEPV-LF-TGS 475 (1198)
Q Consensus 404 ~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~----~~~~--r~~i~~v~Q~~~-l~-~~t 475 (1198)
.+||++++|++++|+|||||||||+++.|+|++.|.+|+|.++|.|+.... +..+ |..++|++|++. ++ ..|
T Consensus 149 ~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~p~~t 228 (359)
T 2og2_A 149 ELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAATV 228 (359)
T ss_dssp SCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCCHHHH
T ss_pred CcceecCCCeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccChhhh
Confidence 578889999999999999999999999999999999999999999986543 2223 467999999997 65 569
Q ss_pred HHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhhccCCC--EEEEeCCCCCC
Q 000984 476 IKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPR--ILLLDEATSAL 553 (1198)
Q Consensus 476 i~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal~~~~~--illlDe~ts~l 553 (1198)
+++|+.++.....+ .. .++.. |...........|| |||++||||+..+|+ +|+|| ||+++
T Consensus 229 v~e~l~~~~~~~~d---------~~---lldt~--Gl~~~~~~~~~eLS---kqr~~iaral~~~P~e~lLvLD-pttgl 290 (359)
T 2og2_A 229 LSKAVKRGKEEGYD---------VV---LCDTS--GRLHTNYSLMEELI---ACKKAVGKIVSGAPNEILLVLD-GNTGL 290 (359)
T ss_dssp HHHHHHHHHHTTCS---------EE---EEECC--CCSSCCHHHHHHHH---HHHHHHHHHSTTCCSEEEEEEE-GGGGG
T ss_pred HHHHHHHHHhCCCH---------HH---HHHhc--CCChhhhhHHHHHH---HHHHHHHHHHhcCCCceEEEEc-CCCCC
Confidence 99999864210000 00 01111 22111111122477 999999999999999 99999 99999
Q ss_pred CHHhHHHHHHHHHHHhCCCeEEEEecC---------cchhh-ccCEEEEEeCCE
Q 000984 554 DAESEKVVQEALDRIMVNRTTVIVAHR---------LSTVR-NADMIAVIHRGK 597 (1198)
Q Consensus 554 D~~~~~~i~~~i~~~~~~~t~i~itH~---------~~~~~-~~d~i~~l~~G~ 597 (1198)
|+.... +.+.+ ..+.|+|++||- ++... ..+.|..+..|+
T Consensus 291 D~~~~~---~~~~~-~~g~t~iiiThlD~~~~gG~~lsi~~~~~~pI~~ig~Ge 340 (359)
T 2og2_A 291 NMLPQA---REFNE-VVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGE 340 (359)
T ss_dssp GGHHHH---HHHHH-HTCCCEEEEESCTTCSCTHHHHHHHHHHCCCEEEEECSS
T ss_pred CHHHHH---HHHHH-hcCCeEEEEecCcccccccHHHHHHHHhCCCEEEEeCCC
Confidence 998542 12222 237899999992 33333 367899998886
|
| >2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.73 E-value=8.4e-21 Score=208.94 Aligned_cols=174 Identities=15% Similarity=0.163 Sum_probs=141.2
Q ss_pred ccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCC-CCeEEECCeecCCcCHHHHhcceEEEcC-----CCCCCc
Q 000984 400 QIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQ-AGEVLIDGINLKEFQLQWIRKKIGLVSQ-----EPVLFT 473 (1198)
Q Consensus 400 ~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~-~G~i~i~g~~~~~~~~~~~r~~i~~v~Q-----~~~l~~ 473 (1198)
++|+++| +++|++++|+||||||||||+++|+|+++|+ +|+|.++|.++..+. +..+++++| ++..|.
T Consensus 15 ~vl~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i~~~~----~~~~~~v~q~~~gl~~~~l~ 88 (261)
T 2eyu_A 15 DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVF----KHKKSIVNQREVGEDTKSFA 88 (261)
T ss_dssp THHHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESSCCSCC----CCSSSEEEEEEBTTTBSCHH
T ss_pred HHHHHHh--hCCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCcceeec----CCcceeeeHHHhCCCHHHHH
Confidence 4899999 8999999999999999999999999999998 999999998876543 345677888 666678
Q ss_pred ccHHHHHhcCCCCC-------CHHHHHHHHHHhc-----------------HHHHH------------HhCCCCccchhc
Q 000984 474 GSIKDNIAYGKDDA-------TTEEIRVATELAN-----------------AAKFI------------DKLPQGIDTLVG 517 (1198)
Q Consensus 474 ~ti~~Ni~~~~~~~-------~~~~~~~~~~~~~-----------------~~~~i------------~~l~~g~~t~v~ 517 (1198)
.+++.++.. .|+. +.+..+.+++.+. .+..+ ..+++++++.++
T Consensus 89 ~~la~aL~~-~p~illlDEp~D~~~~~~~l~~~~~g~~vl~t~H~~~~~~~~dri~~l~~~~~~~~~~~~l~~~l~~vi~ 167 (261)
T 2eyu_A 89 DALRAALRE-DPDVIFVGEMRDLETVETALRAAETGHLVFGTLHTNTAIDTIHRIVDIFPLNQQEQVRIVLSFILQGIIS 167 (261)
T ss_dssp HHHHHHHHH-CCSEEEESCCCSHHHHHHHHHHHHTTCEEEEEECCSSHHHHHHHHHHTSCGGGHHHHHHHHHHHEEEEEE
T ss_pred HHHHHHHhh-CCCEEEeCCCCCHHHHHHHHHHHccCCEEEEEeCcchHHHHHHHHhhhcCccccchHHHHHHHHhhEEEE
Confidence 889999886 4443 5665555544321 11111 134568899999
Q ss_pred CCCCCCChHHHHHHhHHHhhccCCCE--EEEeCCCCCCCHHh---------HHHHHHHHHHHhCCCeEEEEecCcc
Q 000984 518 EHGTQLSGGQKQRIAIARAILKDPRI--LLLDEATSALDAES---------EKVVQEALDRIMVNRTTVIVAHRLS 582 (1198)
Q Consensus 518 ~~g~~lSgGqkqri~lARal~~~~~i--lllDe~ts~lD~~~---------~~~i~~~i~~~~~~~t~i~itH~~~ 582 (1198)
+++..+|+| ||++++|+++.+|++ +|+||+|+++|... +..+++.++...+++|.+.++||++
T Consensus 168 qrl~~~~~G--~R~~i~e~l~~~~~i~~li~d~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~g~t~~~~a~r~~ 241 (261)
T 2eyu_A 168 QRLLPKIGG--GRVLAYGLLIPNTAIRNLIRENKLQQVYSLMQSGQAETGMQTMNQTLYKLYKQGLITLEDAMEAS 241 (261)
T ss_dssp EEEECCSSS--SSEEEEEEECCCHHHHHHHHHTCHHHHHHHHHHSCSCTTEECHHHHHHHHHHTTSSCHHHHHHHC
T ss_pred EEeEecCCC--CEEEEEEEecCCHHHHHHHHcCCHHHHHHHHHHhHHhcCCccHHHHHHHHHHcCCCCHHHHHHHh
Confidence 999999999 899999999999999 99999999999863 3467888888889999999999986
|
| >2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=99.73 E-value=7.2e-20 Score=191.10 Aligned_cols=159 Identities=17% Similarity=0.238 Sum_probs=118.7
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcceEEEcCCCCCCcccHHHHHhcCCCCCCHHH
Q 000984 412 GTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEE 491 (1198)
Q Consensus 412 g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~Ni~~~~~~~~~~~ 491 (1198)
|++++|+||||||||||+++|+|+++ ++| |.++|.++.++. .++++++|++|+. .++ ++|+.......+
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~-~~G-i~~~g~~~~~~~--~~~~~ig~~~~~~---~g~-~~~l~~~~~~~~--- 69 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLK-SSG-VPVDGFYTEEVR--QGGRRIGFDVVTL---SGT-RGPLSRVGLEPP--- 69 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHH-HTT-CCCEEEECCEEE--TTSSEEEEEEEET---TSC-EEEEEECCCCCC---
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcc-cCC-EEEcCEecchhH--hhhceEEEEEEec---ccc-eehhhcccccCC---
Confidence 78999999999999999999999998 999 999999886554 4688999999986 332 223221000000
Q ss_pred HHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHH-hHHH---hhccCCCEEEEeC--CCCCCCHHhHHHHHHHH
Q 000984 492 IRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRI-AIAR---AILKDPRILLLDE--ATSALDAESEKVVQEAL 565 (1198)
Q Consensus 492 ~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri-~lAR---al~~~~~illlDe--~ts~lD~~~~~~i~~~i 565 (1198)
+...+..+|+.+..+|+|||+++ +|+| |+.++|++||||| |+...|....+.+.+.+
T Consensus 70 -----------------~~~~~~~v~~~~~~ls~~er~~~~~l~~~a~A~~~~~dvlilDE~g~~~~~~~~~~~~l~~~l 132 (189)
T 2i3b_A 70 -----------------PGKRECRVGQYVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQLFIQAVRQTL 132 (189)
T ss_dssp -----------------SSSCCEESSSSEECHHHHHTTTTTTTCCCCCCCSSCCCCEEECCCSTTTTTCSHHHHHHHHHH
T ss_pred -----------------ccccccccceEEEcchHHHHHHHHHHhhhhHhhccCCCEEEEeCCCccccccHHHHHHHHHHH
Confidence 01123478888999999999998 5566 7899999999999 88888887666666655
Q ss_pred HHHhCCCeEEE--Ee--cCcchhhccCEEEEEeCCEEEEec
Q 000984 566 DRIMVNRTTVI--VA--HRLSTVRNADMIAVIHRGKIVEKG 602 (1198)
Q Consensus 566 ~~~~~~~t~i~--it--H~~~~~~~~d~i~~l~~G~i~~~g 602 (1198)
.. .+++|+ ++ |+.+ ....|+|..+++|+|.+..
T Consensus 133 ~~---~~~~ilgti~vsh~~~-~~~vd~i~~~~~~~i~~~~ 169 (189)
T 2i3b_A 133 ST---PGTIILGTIPVPKGKP-LALVEEIRNRKDVKVFNVT 169 (189)
T ss_dssp HC---SSCCEEEECCCCCSSC-CTTHHHHHTTCCSEEEECC
T ss_pred hC---CCcEEEEEeecCCCCc-hHHHHHHeecCCcEEEEeC
Confidence 43 345554 34 9876 5567888888999998753
|
| >2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=2.7e-19 Score=204.56 Aligned_cols=195 Identities=15% Similarity=0.195 Sum_probs=146.7
Q ss_pred cEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCc-------CH
Q 000984 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEF-------QL 455 (1198)
Q Consensus 383 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~-------~~ 455 (1198)
.++.+++++.|+. +..+|+++ |+|.+||+++|+||||||||||+++|.|+.+|+.|.|.+.|.+.+++ ..
T Consensus 45 ~i~~~~l~~~~~t--g~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~~g~i~~~G~~~~ev~~~i~~~~~ 121 (347)
T 2obl_A 45 PLLRQVIDQPFIL--GVRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGASADIIVLALIGERGREVNEFLALLPQ 121 (347)
T ss_dssp STTCCCCCSEECC--SCHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHTTSCH
T ss_pred CeeecccceecCC--CCEEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCCCCEEEEEEecccHHHHHHHHHhhhh
Confidence 4788899999963 35699999 99999999999999999999999999999999999999988653221 22
Q ss_pred HHHhcceEEEcCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccch-hcCCCCCCChHHHHHHhHH
Q 000984 456 QWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTL-VGEHGTQLSGGQKQRIAIA 534 (1198)
Q Consensus 456 ~~~r~~i~~v~Q~~~l~~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~-v~~~g~~lSgGqkqri~lA 534 (1198)
..+++.+.+++|.+. ...+++..+...+.+.+.... .|.+.. +-+...+||+|| ||+++|
T Consensus 122 ~~~~~~v~~~~~~~~----------------~~~~r~~~~~~~~~~ae~~~~--~~~~vl~~ld~~~~lS~g~-r~v~la 182 (347)
T 2obl_A 122 STLSKCVLVVTTSDR----------------PALERMKAAFTATTIAEYFRD--QGKNVLLMMDSVTRYARAA-RDVGLA 182 (347)
T ss_dssp HHHTTEEEEEECTTS----------------CHHHHHHHHHHHHHHHHHHHT--TTCEEEEEEETHHHHHHHH-HHHHHH
T ss_pred hhhhceEEEEECCCC----------------CHHHHHHHHHHHHHHHHHHHh--ccccHHHHHhhHHHHHHHH-HHHHHH
Confidence 234555677766421 112344444444444444332 233321 123456899999 899999
Q ss_pred HhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhC---CC-----eEEEEecCcchhhccCEEEEEeCCEEEEecChhh
Q 000984 535 RAILKDPRILLLDEATSALDAESEKVVQEALDRIMV---NR-----TTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSK 606 (1198)
Q Consensus 535 Ral~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~---~~-----t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~ 606 (1198)
+.+|++ |+++|+.....+.+.+++..+ +. |++++||+++ -.-||++++|.+|+|+..|++++
T Consensus 183 ---l~~p~~------t~Gldp~~~~~l~~ller~~~~~~GsiT~~~tVl~~thdl~-~~i~d~v~~i~dG~Ivl~~~l~~ 252 (347)
T 2obl_A 183 ---SGEPDV------RGGFPPSVFSSLPKLLERAGPAPKGSITAIYTVLLESDNVN-DPIGDEVRSILDGHIVLTRELAE 252 (347)
T ss_dssp ---TTCCCC------BTTBCHHHHHHHHHHHTTCEECSSSEEEEEEEEECCSSCCC-CHHHHHHHHHCSEEEEBCHHHHT
T ss_pred ---cCCCCc------ccCCCHHHHHHHHHHHHHHhCCCCCCeeeEEEEEEeCCCCC-ChhhhheEEeeCcEEEEeCCHHH
Confidence 588887 999999999999998887752 55 8999999998 55699999999999999998887
Q ss_pred Hhc
Q 000984 607 LVE 609 (1198)
Q Consensus 607 l~~ 609 (1198)
+..
T Consensus 253 ~~~ 255 (347)
T 2obl_A 253 ENH 255 (347)
T ss_dssp TTC
T ss_pred cCC
Confidence 643
|
| >2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=2.4e-20 Score=216.26 Aligned_cols=175 Identities=15% Similarity=0.187 Sum_probs=142.7
Q ss_pred ccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCC-CCeEEECCeecCCcCHHHHhcceEEEcC-----CCCCCc
Q 000984 400 QIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQ-AGEVLIDGINLKEFQLQWIRKKIGLVSQ-----EPVLFT 473 (1198)
Q Consensus 400 ~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~-~G~i~i~g~~~~~~~~~~~r~~i~~v~Q-----~~~l~~ 473 (1198)
++|++++ +++|+.++|+||||||||||+++|+|+++|. +|+|.+.|.++. + .++..+++++| ++..|+
T Consensus 126 ~~l~~l~--~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e-~---~~~~~~~~v~Q~~~g~~~~~~~ 199 (372)
T 2ewv_A 126 DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIE-Y---VFKHKKSIVNQREVGEDTKSFA 199 (372)
T ss_dssp SSHHHHT--TSSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCC-S---CCCCSSSEEEEEEBTTTBSCSH
T ss_pred HHHHHHh--hcCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHh-h---hhccCceEEEeeecCCCHHHHH
Confidence 4567665 7899999999999999999999999999998 899987775553 2 35678999999 889999
Q ss_pred ccHHHHHhcCCCCC-------CHHHHHHHHHHhcH-----------------HHHH------------HhCCCCccchhc
Q 000984 474 GSIKDNIAYGKDDA-------TTEEIRVATELANA-----------------AKFI------------DKLPQGIDTLVG 517 (1198)
Q Consensus 474 ~ti~~Ni~~~~~~~-------~~~~~~~~~~~~~~-----------------~~~i------------~~l~~g~~t~v~ 517 (1198)
+++++|+.. .|+. +.+.++.+++.++. +..+ ..+++++++.|+
T Consensus 200 ~~l~~~L~~-~pd~illdE~~d~e~~~~~l~~~~~g~~vi~t~H~~~~~~~~~rl~~l~~~~~~~~~~~~l~~~l~~vv~ 278 (372)
T 2ewv_A 200 DALRAALRE-DPDVIFVGEMRDLETVETALRAAETGHLVFGTLHTNTAIDTIHRIVDIFPLNQQEQVRIVLSFILQGIIS 278 (372)
T ss_dssp HHHHHHTTS-CCSEEEESCCCSHHHHHHHHHHHTTTCEEEECCCCCSHHHHHHHHHHTSCTTSHHHHHHHHHHSCCEEEE
T ss_pred HHHHHHhhh-CcCEEEECCCCCHHHHHHHHHHHhcCCEEEEEECcchHHHHHHHHHHhcCcccchhHHHHHHHhhhEEEE
Confidence 999999996 4554 66777766665432 1111 124668899999
Q ss_pred CCCCCCChHHHHHHhHHHhhccCCCE--EEEeCCCCCCCHH----h-----HHHHHHHHHHHhCCCeEEEEecCcch
Q 000984 518 EHGTQLSGGQKQRIAIARAILKDPRI--LLLDEATSALDAE----S-----EKVVQEALDRIMVNRTTVIVAHRLST 583 (1198)
Q Consensus 518 ~~g~~lSgGqkqri~lARal~~~~~i--lllDe~ts~lD~~----~-----~~~i~~~i~~~~~~~t~i~itH~~~~ 583 (1198)
+++..+|+| ||+++||+++.+|+| +|+||+|+++|.. + +...++.+....+++|.+.++||++.
T Consensus 279 qrl~~~~~G--~R~~i~e~l~~~~~i~~li~d~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~g~t~~~~a~r~~~ 353 (372)
T 2ewv_A 279 QRLLPKIGG--GRVLAYELLIPNTAIRNLIRENKLQQVYSLMQSGQAETGMQTMNQTLYKLYKQGLITLEDAMEASP 353 (372)
T ss_dssp EEEEECSSS--SEEEEEEECCCCSHHHHHHHHTCHHHHHHHCC-------CBCSHHHHHHTTTTSSSCTTTTTSSCS
T ss_pred EEeEecCCC--CEEEEEEEeeCCHHHHHHHHcCCHHHHHHHHHHhHHhcCCccHHHHHHHHHHCCCCCHHHHHHHcC
Confidence 999999999 899999999999999 9999999999965 2 33578888888889999999999874
|
| >4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.70 E-value=2.8e-17 Score=199.92 Aligned_cols=77 Identities=19% Similarity=0.329 Sum_probs=71.4
Q ss_pred CCC-ChHHHHHHhHHHhhccCC--CEEEEeCCCCCCCHHhHHHHHHHHHHHhCCCeEEEEecCcchhhccCEEEEEeCCE
Q 000984 521 TQL-SGGQKQRIAIARAILKDP--RILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGK 597 (1198)
Q Consensus 521 ~~l-SgGqkqri~lARal~~~~--~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~ 597 (1198)
..| |||||||++||||++.+| ++|||||||++||+.+...+.+.|+++.+++|+|+|||+++.+..||++++|++|.
T Consensus 395 ~~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~~~~vi~itH~~~~~~~~d~~~~~~~~~ 474 (517)
T 4ad8_A 395 SDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLADTRQVLVVTHLAQIAARAHHHYKVEKQV 474 (517)
T ss_dssp SSSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHHHSEEEEECCCHHHHHHSSEEEEEECCE
T ss_pred HhcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhCCEEEEEeccc
Confidence 456 999999999999999999 99999999999999999999999988877899999999999888899999996653
|
| >3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B | Back alignment and structure |
|---|
Probab=99.69 E-value=1.6e-16 Score=182.76 Aligned_cols=76 Identities=28% Similarity=0.387 Sum_probs=67.6
Q ss_pred CCCCCChHHHH------HHhHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh-CCCeEEEEecCcchhhccCEEE
Q 000984 519 HGTQLSGGQKQ------RIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRNADMIA 591 (1198)
Q Consensus 519 ~g~~lSgGqkq------ri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~~~d~i~ 591 (1198)
....||||||| |+++|||+..+|++|||||||++||+.....+.+.++++. +++|+|+|||+.+....||+|+
T Consensus 245 ~~~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~vi~~sH~~~~~~~~d~~~ 324 (339)
T 3qkt_A 245 PLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEELKDAADHVI 324 (339)
T ss_dssp CGGGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGGGSSEEEEEESCGGGGGGCSEEE
T ss_pred ChHHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEEChHHHHHhCCEEE
Confidence 34679999999 6788899999999999999999999999999999988764 4679999999988777899999
Q ss_pred EEe
Q 000984 592 VIH 594 (1198)
Q Consensus 592 ~l~ 594 (1198)
+|+
T Consensus 325 ~l~ 327 (339)
T 3qkt_A 325 RIS 327 (339)
T ss_dssp EEE
T ss_pred EEE
Confidence 985
|
| >1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=2.7e-17 Score=185.96 Aligned_cols=181 Identities=13% Similarity=0.106 Sum_probs=119.4
Q ss_pred ccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCC-eEEECCeecCCcCHHHHhcceEEEcCCCCCCcccHHH
Q 000984 400 QIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAG-EVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKD 478 (1198)
Q Consensus 400 ~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G-~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~ 478 (1198)
++|+++++.+++|++++|+||+|||||||++.|+|.+.|.+| .|.+.+.+ .+...++.++..+.|+..+ +..+
T Consensus 23 ~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~e---~~~~~~~~r~~~~~~~~~~---~~~~ 96 (296)
T 1cr0_A 23 TGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLE---ESVEETAEDLIGLHNRVRL---RQSD 96 (296)
T ss_dssp TTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEESS---SCHHHHHHHHHHHHTTCCG---GGCH
T ss_pred HHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeCc---CCHHHHHHHHHHHHcCCCh---hhcc
Confidence 589999999999999999999999999999999999999877 77654433 3455666666555554422 2223
Q ss_pred HHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHH-HHHHhHHHhhccCCCEEEEeCCCC---C--
Q 000984 479 NIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQ-KQRIAIARAILKDPRILLLDEATS---A-- 552 (1198)
Q Consensus 479 Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGq-kqri~lARal~~~~~illlDe~ts---~-- 552 (1198)
|+..+. .+.++..+.. .+.+... ++ .+.+...++|.+| +||+. |+|+..+|+++|+||||+ +
T Consensus 97 ~l~~~~--~~~~~~~~~~-----~~~l~~~--~l--~i~~~~~~~~~~~l~~~~~-a~~~~~~p~llilDept~~~~~~~ 164 (296)
T 1cr0_A 97 SLKREI--IENGKFDQWF-----DELFGND--TF--HLYDSFAEAETDRLLAKLA-YMRSGLGCDVIILDHISIVVSASG 164 (296)
T ss_dssp HHHHHH--HHHTHHHHHH-----HHHHSSS--CE--EEECCCCSCCHHHHHHHHH-HHHHTTCCSEEEEEEEC-------
T ss_pred ccccCC--CCHHHHHHHH-----HHHhccC--CE--EEECCCCCCCHHHHHHHHH-HHHHhcCCCEEEEcCccccCCCCC
Confidence 333211 1112222111 1112211 11 2333335689999 77777 999999999999999999 4
Q ss_pred -CCH-HhHHHHHHHHHHHhC--CCeEEEEecCc--c--------------------hhh-ccCEEEEEeCCEE
Q 000984 553 -LDA-ESEKVVQEALDRIMV--NRTTVIVAHRL--S--------------------TVR-NADMIAVIHRGKI 598 (1198)
Q Consensus 553 -lD~-~~~~~i~~~i~~~~~--~~t~i~itH~~--~--------------------~~~-~~d~i~~l~~G~i 598 (1198)
+|. .....+.+.|+++.+ ++|+|+++|.. + .+. .||+|++|++|+.
T Consensus 165 ~~d~~~~~~~i~~~L~~la~~~~~~vi~vsh~~r~~~~~~~~~~~~p~l~dl~~s~~i~~~aD~vi~L~~~~~ 237 (296)
T 1cr0_A 165 ESDERKMIDNLMTKLKGFAKSTGVVLVVICHLKNPDKGKAHEEGRPVSITDLRGSGALRQLSDTIIALERNQQ 237 (296)
T ss_dssp ----CHHHHHHHHHHHHHHHHHCCEEEEEEECC-----------------CCC---CHHHHCSEEEEEEEC--
T ss_pred CCCHHHHHHHHHHHHHHHHHHhCCeEEEEEecCccccccccccCCCCCHHHhcccHHhHhhCcEEEEEecCcc
Confidence 344 344567777776643 78999999995 4 454 5999999999875
|
| >2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B* | Back alignment and structure |
|---|
Probab=99.67 E-value=1.5e-17 Score=214.01 Aligned_cols=172 Identities=15% Similarity=0.153 Sum_probs=121.7
Q ss_pred ccEEEEe-----EEEEcCCCCCCccccceeEEEeC-------CCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCee
Q 000984 382 GDIELRD-----VYFSYPARPNEQIFSGFSISISS-------GTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGIN 449 (1198)
Q Consensus 382 g~i~~~~-----v~~~y~~~~~~~~l~~i~l~i~~-------g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~ 449 (1198)
+.|+++| +++.|+. +..+++|++|++++ |++++|+||||||||||++.+ |++.+
T Consensus 749 ~~l~i~~~rHP~l~~~~~~--~~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~~----------- 814 (1022)
T 2o8b_B 749 PFLELKGSRHPCITKTFFG--DDFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLAV----------- 814 (1022)
T ss_dssp CCEEEEEECCCC------C--CCCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHHH-----------
T ss_pred ceEEEEeccccEEEEEecC--CceEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHHH-----------
Confidence 4699999 9999842 35799999999987 999999999999999999999 98753
Q ss_pred cCCcCHHHHhcceE-EEcCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHH
Q 000984 450 LKEFQLQWIRKKIG-LVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQK 528 (1198)
Q Consensus 450 ~~~~~~~~~r~~i~-~v~Q~~~l~~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqk 528 (1198)
..++| ||||++. ..|+.|||.. . .++.+.+. .+-.++|++++
T Consensus 815 ---------~aqiG~~Vpq~~~--~l~v~d~I~~-r--------------ig~~d~~~-----------~~~stf~~em~ 857 (1022)
T 2o8b_B 815 ---------MAQMGCYVPAEVC--RLTPIDRVFT-R--------------LGASDRIM-----------SGESTFFVELS 857 (1022)
T ss_dssp ---------HHTTTCCEESSEE--EECCCSBEEE-E--------------CC--------------------CHHHHHHH
T ss_pred ---------HhheeEEeccCcC--CCCHHHHHHH-H--------------cCCHHHHh-----------hchhhhHHHHH
Confidence 23666 9999973 5567777642 1 11112111 12235677777
Q ss_pred HHHhHHHhhccCCCEEEEeCCCCCCCHHhH-HHHHHHHHHHh-C-CCeEEEEecCcchhhc-cCEEEEEeCCEEE--Eec
Q 000984 529 QRIAIARAILKDPRILLLDEATSALDAESE-KVVQEALDRIM-V-NRTTVIVAHRLSTVRN-ADMIAVIHRGKIV--EKG 602 (1198)
Q Consensus 529 qri~lARal~~~~~illlDe~ts~lD~~~~-~~i~~~i~~~~-~-~~t~i~itH~~~~~~~-~d~i~~l~~G~i~--~~g 602 (1198)
+ +++||++..+|+++|||||++++|+... ..+.+.++.+. + ++|+|++||.++.+.. +|++.++ +|++. +.|
T Consensus 858 ~-~a~al~la~~~sLlLLDEp~~Gtd~~dg~~~~~~il~~L~~~~g~~vl~~TH~~el~~~~~d~~~v~-~g~~~~~~~~ 935 (1022)
T 2o8b_B 858 E-TASILMHATAHSLVLVDELGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYHSLVEDYSQNVAVR-LGHMACMVEN 935 (1022)
T ss_dssp H-HHHHHHHCCTTCEEEEECTTTTSCHHHHHHHHHHHHHHHHHTSCCEEEEECCCHHHHHHTSSCSSEE-EEEEEEC---
T ss_pred H-HHHHHHhCCCCcEEEEECCCCCCChHHHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHhCCcceee-cCeEEEEEec
Confidence 5 9999999999999999999999999874 55667777664 3 7899999999998865 8998886 58887 556
Q ss_pred Chhh
Q 000984 603 THSK 606 (1198)
Q Consensus 603 ~~~~ 606 (1198)
++++
T Consensus 936 ~~~~ 939 (1022)
T 2o8b_B 936 ECED 939 (1022)
T ss_dssp ----
T ss_pred Cccc
Confidence 5443
|
| >1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=1.7e-18 Score=210.96 Aligned_cols=169 Identities=14% Similarity=0.124 Sum_probs=117.7
Q ss_pred CCccccceeE-EEeCCCEEEEEcCCCCcHHHHHHH--HhccCCCCCCeEEECCeecCCcCHHHHhcceEEEcCCCCCCcc
Q 000984 398 NEQIFSGFSI-SISSGTTAALVGQSGSGKSTVISL--IERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTG 474 (1198)
Q Consensus 398 ~~~~l~~i~l-~i~~g~~~~ivG~~GsGKStl~~~--l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ 474 (1198)
+.++|+++++ .+++|++++|+||||||||||++. +.|+++|.+|.|.++|.+. .......+++++|++|++...
T Consensus 24 g~~~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g~~~-~~~~~~~~~~~g~~~q~~~~~-- 100 (525)
T 1tf7_A 24 MIEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEET-PQDIIKNARSFGWDLAKLVDE-- 100 (525)
T ss_dssp CCTTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSC-HHHHHHHHGGGTCCHHHHHHT--
T ss_pred CchhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEeCC-HHHHHHHHHHcCCChHHhhcc--
Confidence 3579999999 999999999999999999999999 6799999999999999873 223444567899999987521
Q ss_pred cHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhhccCCCEEEEeCCCCC--
Q 000984 475 SIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSA-- 552 (1198)
Q Consensus 475 ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal~~~~~illlDe~ts~-- 552 (1198)
+|+.+...... ++.+++++..++.+.... ....|||| +|++++|||||+.
T Consensus 101 ---~~l~~~~~~~~-~~~~~~l~~~~l~~~~~~-----------~~~~LS~g-------------~~~~lilDe~t~~~~ 152 (525)
T 1tf7_A 101 ---GKLFILDASPD-PEGQEVVGGFDLSALIER-----------INYAIQKY-------------RARRVSIDSVTSVFQ 152 (525)
T ss_dssp ---TSEEEEECCCC-SSCCSCCSSHHHHHHHHH-----------HHHHHHHH-------------TCSEEEEECSTTTST
T ss_pred ---CcEEEEecCcc-cchhhhhcccCHHHHHHH-----------HHHHHHHc-------------CCCEEEECCHHHHHH
Confidence 12211100000 000011111111111111 11234555 4779999999985
Q ss_pred ---CCHHhHHHHHHHHHHHh-CCCeEEEEecCcchh---------hc-cCEEEEEeCCE
Q 000984 553 ---LDAESEKVVQEALDRIM-VNRTTVIVAHRLSTV---------RN-ADMIAVIHRGK 597 (1198)
Q Consensus 553 ---lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~---------~~-~d~i~~l~~G~ 597 (1198)
+|+...+.+.+.++.+. .++|+|++||+++.+ .. ||+|++|++|+
T Consensus 153 ~~~lD~~~~~~l~~ll~~l~~~g~tvl~itH~~~~~~~~~~~~i~~~laD~vi~L~~~~ 211 (525)
T 1tf7_A 153 QYDASSVVRRELFRLVARLKQIGATTVMTTERIEEYGPIARYGVEEFVSDNVVILRNVL 211 (525)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHHTCEEEEEEECSSSSSCSSTTSCHHHHCSEEEEEEEEC
T ss_pred hcCCHHHHHHHHHHHHHHHHHCCCEEEEEecCCCCccccccccceeeeeeEEEEEEEEc
Confidence 58888888888887764 479999999999874 44 99999999865
|
| >1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=1.9e-16 Score=192.95 Aligned_cols=152 Identities=16% Similarity=0.130 Sum_probs=116.8
Q ss_pred eEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcceEEEcCCCCCCcccHHHHHh-cCC
Q 000984 406 SISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIA-YGK 484 (1198)
Q Consensus 406 ~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~Ni~-~~~ 484 (1198)
+..+++|+.++|+|++|||||||++.++|...|. |. +.+.+++|++. .+++.|.. ++
T Consensus 275 ~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~-G~-----------------~vi~~~~ee~~---~~l~~~~~~~g- 332 (525)
T 1tf7_A 275 GGGFFKDSIILATGATGTGKTLLVSRFVENACAN-KE-----------------RAILFAYEESR---AQLLRNAYSWG- 332 (525)
T ss_dssp TSSEESSCEEEEEECTTSSHHHHHHHHHHHHHTT-TC-----------------CEEEEESSSCH---HHHHHHHHTTS-
T ss_pred CCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHhC-CC-----------------CEEEEEEeCCH---HHHHHHHHHcC-
Confidence 3489999999999999999999999999998774 43 12567778762 35666653 22
Q ss_pred CCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhhccCCCEEEEeCCCCCCCHH-----hHH
Q 000984 485 DDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAE-----SEK 559 (1198)
Q Consensus 485 ~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal~~~~~illlDe~ts~lD~~-----~~~ 559 (1198)
.+.++ .. . .|+..........|||||+||+++||++..+|+++|+| ||++||.. ..+
T Consensus 333 --~~~~~------------~~-~--~g~~~~~~~~p~~LS~g~~q~~~~a~~l~~~p~llilD-p~~~Ld~~~~~~~~~~ 394 (525)
T 1tf7_A 333 --MDFEE------------ME-R--QNLLKIVCAYPESAGLEDHLQIIKSEINDFKPARIAID-SLSALARGVSNNAFRQ 394 (525)
T ss_dssp --CCHHH------------HH-H--TTSEEECCCCGGGSCHHHHHHHHHHHHHTTCCSEEEEE-CHHHHTSSSCHHHHHH
T ss_pred --CCHHH------------HH-h--CCCEEEEEeccccCCHHHHHHHHHHHHHhhCCCEEEEc-ChHHHHhhCChHHHHH
Confidence 12111 11 1 13444445556789999999999999999999999999 99999998 777
Q ss_pred HHHHHHHHHh-CCCeEEEEecCc----------chhhc-cCEEEEEeCCE
Q 000984 560 VVQEALDRIM-VNRTTVIVAHRL----------STVRN-ADMIAVIHRGK 597 (1198)
Q Consensus 560 ~i~~~i~~~~-~~~t~i~itH~~----------~~~~~-~d~i~~l~~G~ 597 (1198)
.+.+.++.+. .+.|+|+++|.. ..+.. ||+|++|++|+
T Consensus 395 ~i~~ll~~l~~~g~tvilvsh~~~~~~~~~~~~~~l~~~~D~vi~L~~ge 444 (525)
T 1tf7_A 395 FVIGVTGYAKQEEITGLFTNTSDQFMGAHSITDSHISTITDTIILLQYVE 444 (525)
T ss_dssp HHHHHHHHHHHTTCEEEEEEECSSSSCCCSSCSSCCTTTCSEEEEEEEEE
T ss_pred HHHHHHHHHHhCCCEEEEEECcccccCcccccCcccceeeeEEEEEEEEE
Confidence 7777776654 478999999998 66654 89999999987
|
| >1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=99.65 E-value=1.6e-19 Score=191.23 Aligned_cols=158 Identities=18% Similarity=0.311 Sum_probs=120.9
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHhccCC-------------CCCCeEEECCeecCCcCHHHHhcceEEEcCCCCCCcccH
Q 000984 410 SSGTTAALVGQSGSGKSTVISLIERFYD-------------PQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSI 476 (1198)
Q Consensus 410 ~~g~~~~ivG~~GsGKStl~~~l~g~~~-------------~~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti 476 (1198)
++|++++|+||||||||||+++|+|+++ |..|+ ++|.++..++.+.+++.+ +|+++++.+++
T Consensus 2 ~~g~~i~lvGpsGaGKSTLl~~L~~~~~~~~~~~v~~ttr~~~~g~--~~g~~~~~~~~~~~~~~i---~~~~~l~~~~~ 76 (198)
T 1lvg_A 2 AGPRPVVLSGPSGAGKSTLLKKLFQEHSSIFGFSVSHTTRNPRPGE--EDGKDYYFVTREMMQRDI---AAGDFIEHAEF 76 (198)
T ss_dssp ---CCEEEECCTTSSHHHHHHHHHHHHTTTEEECCCEECSCCCTTC--CBTTTBEECCHHHHHHHH---HHTCEEEEEEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCchhceeeeeeeccCCCCcc--cCCceEEEccHHHHHHHH---HcCCCEeeeee
Confidence 5899999999999999999999999986 78887 599999889999998876 79999999999
Q ss_pred HHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHH-hhccCCCEEEEeCCCCCCCH
Q 000984 477 KDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIAR-AILKDPRILLLDEATSALDA 555 (1198)
Q Consensus 477 ~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lAR-al~~~~~illlDe~ts~lD~ 555 (1198)
++|+ +|. +.++++++++..... .....|+|+++.... ++ .|| +++.+|++++|||+|+++|.
T Consensus 77 ~~n~-~g~---~~~~i~~~~~~~~~~-~~~~~~~g~~~~~~~-----------~~-~~~~~~l~~p~~~ilde~~~~~d~ 139 (198)
T 1lvg_A 77 SGNL-YGT---SKEAVRAVQAMNRIC-VLDVDLQGVRSIKKT-----------DL-CPIYIFVQPPSLDVLEQRLRLRNT 139 (198)
T ss_dssp TTEE-EEE---EHHHHHHHHHTTCEE-EEECCHHHHHHHTTS-----------SC-CCEEEEEECSCHHHHHHHHHHHTC
T ss_pred cCcc-CCC---CHHHHHHHHHcCCcE-EEECCHHHHHHHHhc-----------CC-CcEEEEEeCCCHHHHHHHHHhcCC
Confidence 9998 664 567777777642110 011234466555321 12 567 89999999999999999999
Q ss_pred HhHHHHHHHHHHHhCCCeEEEEecCcchhhccCEEEEEeC
Q 000984 556 ESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHR 595 (1198)
Q Consensus 556 ~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~~d~i~~l~~ 595 (1198)
++++.|++.+....++ +.++| +. ..+|+|+++++
T Consensus 140 ~~e~~i~~~l~~~~~~---~~~a~--~~-~~~D~iivnd~ 173 (198)
T 1lvg_A 140 ETEESLAKRLAAARTD---MESSK--EP-GLFDLVIINDD 173 (198)
T ss_dssp SCHHHHHHHHHHHHHH---TTGGG--ST-TTCSEEEECSS
T ss_pred CCHHHHHHHHHHHHHH---HHHhh--cc-CCceEEEECCC
Confidence 9999999998776544 34567 33 77999998864
|
| >2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=1.3e-17 Score=183.01 Aligned_cols=166 Identities=13% Similarity=0.150 Sum_probs=104.3
Q ss_pred CCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcceEEEcCCCCCCcccHH
Q 000984 398 NEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIK 477 (1198)
Q Consensus 398 ~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~ 477 (1198)
+.++|+|+||++++|+++||+||+|||||||+++|.|++ |.+.++ ..++.++|++|++....-|++
T Consensus 11 ~~~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~l----G~~~~~----------~~~~~i~~v~~d~~~~~l~~~ 76 (245)
T 2jeo_A 11 VDLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELL----GQNEVE----------QRQRKVVILSQDRFYKVLTAE 76 (245)
T ss_dssp ------------CCSEEEEEECSTTSSHHHHHHHHHHHH----TGGGSC----------GGGCSEEEEEGGGGBCCCCHH
T ss_pred CceeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHh----chhccc----------ccCCceEEEeCCcCccccCHh
Confidence 457999999999999999999999999999999999976 665554 356789999999743356899
Q ss_pred HHHhcCCCCC--------CHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhhccCCCEEEEeCC
Q 000984 478 DNIAYGKDDA--------TTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEA 549 (1198)
Q Consensus 478 ~Ni~~~~~~~--------~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal~~~~~illlDe~ 549 (1198)
+|+.+..... +.+++.+ .++.+.++.+..+ ..||+||+||+++ +++..+|+++|||||
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~---------~L~~l~~~~~~~~----~~ls~g~~~r~~~-~~~~~~~~~lilDg~ 142 (245)
T 2jeo_A 77 QKAKALKGQYNFDHPDAFDNDLMHR---------TLKNIVEGKTVEV----PTYDFVTHSRLPE-TTVVYPADVVLFEGI 142 (245)
T ss_dssp HHHHHHTTCCCTTSGGGBCHHHHHH---------HHHHHHTTCCEEE----CCEETTTTEECSS-CEEECCCSEEEEECT
T ss_pred HhhhhhccCCCCCCcccccHHHHHH---------HHHHHHCCCCeec----ccccccccCccCc-eEEecCCCEEEEeCc
Confidence 9886532211 1122222 2222222333333 4799999999988 688999999999998
Q ss_pred CCCCCHHhHHHHHHHHHHHhCCCeEEEEecCcchh-hc-cCEEEEEeCCEEEEecChhhHh
Q 000984 550 TSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTV-RN-ADMIAVIHRGKIVEKGTHSKLV 608 (1198)
Q Consensus 550 ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~-~~-~d~i~~l~~G~i~~~g~~~~l~ 608 (1198)
....|.. +.++ .+.|++++||....+ +. ++++ ++|+ +++++.
T Consensus 143 ~~~~~~~--------l~~~-~~~~i~v~th~~~~~~r~~~r~~---~~G~-----~~e~~~ 186 (245)
T 2jeo_A 143 LVFYSQE--------IRDM-FHLRLFVDTDSDVRLSRRVLRDV---RRGR-----DLEQIL 186 (245)
T ss_dssp TTTTSHH--------HHTT-CSEEEEEECCHHHHHHHHHHHHT---C--------CHHHHH
T ss_pred cccccHH--------HHHh-cCeEEEEECCHHHHHHHHHHHHH---HcCC-----CHHHHH
Confidence 8777754 2222 378999999974333 33 3333 5664 455554
|
| >1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B* | Back alignment and structure |
|---|
Probab=99.63 E-value=6e-16 Score=154.13 Aligned_cols=88 Identities=25% Similarity=0.356 Sum_probs=74.6
Q ss_pred Cccchh-----cCCCCCCChHHHHHHhHH------HhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh-CCCeEEEEe
Q 000984 511 GIDTLV-----GEHGTQLSGGQKQRIAIA------RAILKDPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVA 578 (1198)
Q Consensus 511 g~~t~v-----~~~g~~lSgGqkqri~lA------Ral~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~it 578 (1198)
+++..+ .....+||||||||++|| ||++.+|+++||||||++||+.+.+.+.+.+.++. +++|+|++|
T Consensus 41 ~~~l~~~~~~~~~~~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivs 120 (148)
T 1f2t_B 41 KVRLFVVWEGKERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVS 120 (148)
T ss_dssp SEEEEEEETTEEECGGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGGGSSEEEEEE
T ss_pred ceEEEeccccccCChhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHccCCEEEEEE
Confidence 455544 345678999999999876 99999999999999999999999999999998864 478999999
Q ss_pred cCcchhhccCEEEEE--eCCEE
Q 000984 579 HRLSTVRNADMIAVI--HRGKI 598 (1198)
Q Consensus 579 H~~~~~~~~d~i~~l--~~G~i 598 (1198)
|+.+....||++++| ++|..
T Consensus 121 H~~~~~~~~d~ii~l~~~~g~s 142 (148)
T 1f2t_B 121 HDEELKDAADHVIRISLENGSS 142 (148)
T ss_dssp SCGGGGGGCSEEEEEEEETTEE
T ss_pred ChHHHHHhCCEEEEEEcCCCeE
Confidence 999766679999999 46643
|
| >1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1 | Back alignment and structure |
|---|
Probab=99.62 E-value=3.2e-18 Score=199.12 Aligned_cols=175 Identities=16% Similarity=0.174 Sum_probs=118.4
Q ss_pred cccceeEEEeC--CCEEEEEcCCCCcHHHHHHHHhccCCCCC----CeEEE----CCeecCCcCHHHHhcceEEEcCCCC
Q 000984 401 IFSGFSISISS--GTTAALVGQSGSGKSTVISLIERFYDPQA----GEVLI----DGINLKEFQLQWIRKKIGLVSQEPV 470 (1198)
Q Consensus 401 ~l~~i~l~i~~--g~~~~ivG~~GsGKStl~~~l~g~~~~~~----G~i~i----~g~~~~~~~~~~~r~~i~~v~Q~~~ 470 (1198)
+.+.|++++++ |++++|+||||||||||+++|+|+++|++ |+|.+ +|.++ .++..++ .+|++++|++.
T Consensus 157 ~~~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~~~~~e~G~i~i~~~~~~~~~-~~~~~~~-~~I~~~~q~~~ 234 (365)
T 1lw7_A 157 YWKFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFNTTSAWEYGREFVFEKLGGDEQ-AMQYSDY-PQMALGHQRYI 234 (365)
T ss_dssp GGGGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTTCEEECCTTHHHHHHSSSSCTT-SSCTTTH-HHHHHHHHHHH
T ss_pred ChhhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhCCCcchhhHHHHHHhhcCCCcc-cCChhHH-HHHHHHHHHHH
Confidence 45689999999 99999999999999999999999999999 99887 35555 4555555 56999999999
Q ss_pred CCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhhc-cCCCEEEEeC-
Q 000984 471 LFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAIL-KDPRILLLDE- 548 (1198)
Q Consensus 471 l~~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal~-~~~~illlDe- 548 (1198)
+|.+|+++||.++.....+...+ .+|+|++||..+++++. .+|++++|||
T Consensus 235 ~~~~t~~~nl~~~~~~~~~~~~~----------------------------~~~~~~~~~~~i~~~~~~~~~~lllLdE~ 286 (365)
T 1lw7_A 235 DYAVRHSHKIAFIDTDFITTQAF----------------------------CIQYEGKAHPFLDSMIKEYPFDVTILLKN 286 (365)
T ss_dssp HHHHHHCSSEEEESSCHHHHHHH----------------------------HHHHHSCCCHHHHHHHHHSCCSEEEEEEC
T ss_pred HHHHhccCCEEEEeCCchHHHHH----------------------------HHHHcCCCCHHHHHHHhhcCCCEEEECCC
Confidence 99999999999865322111111 12344556666666654 4777777777
Q ss_pred --CC------CCCCHHhHHHHHHHHHHHhC--CCeEEEEecCcchhhccCEEEEEeCCEEEEecChhhH
Q 000984 549 --AT------SALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKL 607 (1198)
Q Consensus 549 --~t------s~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l 607 (1198)
|+ +++|+.....+.+.+.++.+ +.++++++|.-..-+.+|++.++++ +.+.|+++||
T Consensus 287 ~~p~~~~g~~~sld~~~r~~l~~~l~~l~~~~~~~ililde~~~~~r~~~~i~~i~~--~l~~~~~~~~ 353 (365)
T 1lw7_A 287 NTEWVDDGLRSLGSQKQRQQFQQLLKKLLDKYKVPYIEIESPSYLDRYNQVKAVIEK--VLNEEEISEL 353 (365)
T ss_dssp CCC-----------CCSHHHHHHHHHHHHHGGGCCCEEEECSSHHHHHHHHHHHHHH--HTSCCCCSSC
T ss_pred CCCcccCCCcCCccHHHHHHHHHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH--HhcccchhHh
Confidence 44 46777777777777765543 6677777765333333555555543 3344455554
|
| >1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=2.3e-16 Score=196.93 Aligned_cols=158 Identities=19% Similarity=0.214 Sum_probs=117.5
Q ss_pred cccEEEEeEEEEcCCC--CCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCC-CCCCeEEECCeecCCcCHHH
Q 000984 381 RGDIELRDVYFSYPAR--PNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYD-PQAGEVLIDGINLKEFQLQW 457 (1198)
Q Consensus 381 ~g~i~~~~v~~~y~~~--~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~-~~~G~i~i~g~~~~~~~~~~ 457 (1198)
.+.|++++. ++|-- .+..+++|+||+ |++++|+||||||||||++++.|+.. ++.|.+. . .
T Consensus 548 ~~~i~i~~~--rHP~le~~~~~vl~disl~---g~i~~I~GpNGsGKSTlLr~iagl~~~~~~G~~v-p----------a 611 (765)
T 1ewq_A 548 GDRLQIRAG--RHPVVERRTEFVPNDLEMA---HELVLITGPNMAGKSTFLRQTALIALLAQVGSFV-P----------A 611 (765)
T ss_dssp SSSEEEEEE--CCTTGGGTSCCCCEEEEES---SCEEEEESCSSSSHHHHHHHHHHHHHHHTTTCCB-S----------S
T ss_pred CCcEEEEEe--ECceEccCCceEeeeccCC---CcEEEEECCCCCChHHHHHHHHhhhhhcccCcee-e----------h
Confidence 346888887 44431 235799999999 99999999999999999999999874 6777652 1 1
Q ss_pred HhcceEEEcCCCCCCc-ccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHh
Q 000984 458 IRKKIGLVSQEPVLFT-GSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARA 536 (1198)
Q Consensus 458 ~r~~i~~v~Q~~~l~~-~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARa 536 (1198)
.+.++++++| +|. -++.||+.. .+|+|++|++.+|++
T Consensus 612 ~~~~i~~v~~---i~~~~~~~d~l~~---------------------------------------g~S~~~~e~~~la~i 649 (765)
T 1ewq_A 612 EEAHLPLFDG---IYTRIGASDDLAG---------------------------------------GKSTFMVEMEEVALI 649 (765)
T ss_dssp SEEEECCCSE---EEEECCC---------------------------------------------CCSHHHHHHHHHHHH
T ss_pred hccceeeHHH---hhccCCHHHHHHh---------------------------------------cccHHHHHHHHHHHH
Confidence 1456888877 454 366666542 258899999999999
Q ss_pred h--ccCCCEEEEeCC---CCCCCHHhH-HHHHHHHHHHhCCCeEEEEecCcchhhccCEEEEEeCCEEEE
Q 000984 537 I--LKDPRILLLDEA---TSALDAESE-KVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVE 600 (1198)
Q Consensus 537 l--~~~~~illlDe~---ts~lD~~~~-~~i~~~i~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~ 600 (1198)
+ +.+|+++||||| |+++|..+. ..+.+.+.+ .++|+|++||+.+....+ .-.+.++++..
T Consensus 650 l~~a~~p~LlLLDEpgrGTs~lD~~~~~~~i~~~L~~--~g~~vl~~TH~~~l~~~~--~~~v~n~~~~~ 715 (765)
T 1ewq_A 650 LKEATENSLVLLDEVGRGTSSLDGVAIATAVAEALHE--RRAYTLFATHYFELTALG--LPRLKNLHVAA 715 (765)
T ss_dssp HHHCCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHH--HTCEEEEECCCHHHHTCC--CTTEEEEEEEE
T ss_pred HHhccCCCEEEEECCCCCCCCcCHHHHHHHHHHHHHh--CCCEEEEEeCCHHHHHhh--hhcceEEEEEE
Confidence 9 999999999999 999999875 467777766 589999999998876655 22345555543
|
| >1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11 | Back alignment and structure |
|---|
Probab=99.61 E-value=5.9e-17 Score=186.20 Aligned_cols=166 Identities=17% Similarity=0.202 Sum_probs=115.5
Q ss_pred ccccce-eEEEeCCCEEEEEcCCCCcHHHHHHHHhccC--CCCC----Ce-EEECCeecCCcCHHHHhcceEEEcCCCCC
Q 000984 400 QIFSGF-SISISSGTTAALVGQSGSGKSTVISLIERFY--DPQA----GE-VLIDGINLKEFQLQWIRKKIGLVSQEPVL 471 (1198)
Q Consensus 400 ~~l~~i-~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~--~~~~----G~-i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l 471 (1198)
+.|+.+ ++.+++|++++|+||+|||||||++.+++.+ +|.. |+ |++++.+.. .++++++++|++.+
T Consensus 118 ~~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~------~~~~i~~i~q~~~~ 191 (349)
T 1pzn_A 118 KSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTF------RPERIREIAQNRGL 191 (349)
T ss_dssp HHHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCC------CHHHHHHHHHTTTC
T ss_pred HHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCC------CHHHHHHHHHHcCC
Confidence 356665 6899999999999999999999999999998 5655 67 899987641 24578999999988
Q ss_pred CcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhhc-------cCCCEE
Q 000984 472 FTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAIL-------KDPRIL 544 (1198)
Q Consensus 472 ~~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal~-------~~~~il 544 (1198)
+..++.+||.+.... + |.+|+|++.++++++ .+|+++
T Consensus 192 ~~~~v~~ni~~~~~~-~-----------------------------------~~~~~~~l~~~~~~~~~lS~G~~~~~ll 235 (349)
T 1pzn_A 192 DPDEVLKHIYVARAF-N-----------------------------------SNHQMLLVQQAEDKIKELLNTDRPVKLL 235 (349)
T ss_dssp CHHHHGGGEEEEECC-S-----------------------------------HHHHHHHHHHHHHHHHHSSSSSSCEEEE
T ss_pred CHHHHhhCEEEEecC-C-----------------------------------hHHHHHHHHHHHHHHHHhccccCCCCEE
Confidence 888999999875431 1 234566666666666 689999
Q ss_pred EEeCCCCCCCHHh-------H-----HHHHHHHHHHh--CCCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChhhH
Q 000984 545 LLDEATSALDAES-------E-----KVVQEALDRIM--VNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKL 607 (1198)
Q Consensus 545 llDe~ts~lD~~~-------~-----~~i~~~i~~~~--~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l 607 (1198)
|+||||+.+|++. + +.+.+.+..+. .++|+|+++|....... ++.+.+...|++.+++.+..|
T Consensus 236 IlDs~ta~ld~~~~~~~~~~~r~~~~~~~l~~L~~la~~~~~tvii~~h~~~~~~~~~~~~~~~~~G~~l~~~~~~rL 313 (349)
T 1pzn_A 236 IVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQARPDAFFGDPTRPIGGHILAHSATLRV 313 (349)
T ss_dssp EEETSSTTHHHHCCSTTTHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECC---------------CCCCCTTCSEEE
T ss_pred EEeCchHhhhhhhcccccHHHHHHHHHHHHHHHHHHHHHcCcEEEEEcccccccccccCCccccCCcceEeecCcEEE
Confidence 9999999999863 1 23333444433 37899999998765432 344567778888877765555
|
| >3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=7.6e-16 Score=195.55 Aligned_cols=167 Identities=14% Similarity=0.118 Sum_probs=118.8
Q ss_pred ccEEEEeEEEEcCCC--CCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHH--------hccCCCCCCeEEECCeecC
Q 000984 382 GDIELRDVYFSYPAR--PNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLI--------ERFYDPQAGEVLIDGINLK 451 (1198)
Q Consensus 382 g~i~~~~v~~~y~~~--~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l--------~g~~~~~~G~i~i~g~~~~ 451 (1198)
+.|.+++....+-.. .++.+++|++|++++|++++|+|||||||||+++.+ .|.+-|.++..
T Consensus 630 ~~i~i~~~rHP~le~~~~~~~v~ndisl~~~~g~i~~ItGpNGsGKSTlLr~ial~~~~aq~G~~vpa~~~~-------- 701 (934)
T 3thx_A 630 GRIILKASRHACVEVQDEIAFIPNDVYFEKDKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCESAE-------- 701 (934)
T ss_dssp CEEEEEEECCTTTTTC--CCCCCEEEEEETTTBCEEEEECCTTSSHHHHHHHHHHHHHHHHHTCCBSEEEEE--------
T ss_pred cceEeecCccchhhhcCCceeecccceeecCCCeEEEEECCCCCCHHHHHHHHHHHHHHHhcCCcccccccc--------
Confidence 458888776544221 135789999999999999999999999999999999 55544443221
Q ss_pred CcCHHHHhcceEEEcCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHH
Q 000984 452 EFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRI 531 (1198)
Q Consensus 452 ~~~~~~~r~~i~~v~Q~~~l~~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri 531 (1198)
++.+. .+|. .+| +.+.+ ...+|+|++++.
T Consensus 702 ----------~~~~d---~i~~-------~ig-----------------~~d~l--------------~~~lStf~~e~~ 730 (934)
T 3thx_A 702 ----------VSIVD---CILA-------RVG-----------------AGDSQ--------------LKGVSTFMAEML 730 (934)
T ss_dssp ----------EECCS---EEEE-------ECC----------------------------------------CHHHHHHH
T ss_pred ----------chHHH---HHHH-------hcC-----------------chhhH--------------HHhHhhhHHHHH
Confidence 11110 0110 001 00111 124788888888
Q ss_pred hHHHhh--ccCCCEEEEeCCCCCCCHHhHHHH-HHHHHHHh--CCCeEEEEecCcchhhccCEEEEEeCCEEEEecChhh
Q 000984 532 AIARAI--LKDPRILLLDEATSALDAESEKVV-QEALDRIM--VNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSK 606 (1198)
Q Consensus 532 ~lARal--~~~~~illlDe~ts~lD~~~~~~i-~~~i~~~~--~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~ 606 (1198)
.+|+++ ..+|+++||||||+++|+.....+ ...++.+. .++|+|++||..+....||++..+++|++...+++++
T Consensus 731 ~~a~il~~a~~~sLlLLDEp~~GlD~~~~~~i~~~il~~l~~~~g~~vl~aTH~~el~~lad~~~~v~ng~v~~~~~~~~ 810 (934)
T 3thx_A 731 ETASILRSATKDSLIIIDELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHFHELTALANQIPTVNNLHVTALTTEET 810 (934)
T ss_dssp HHHHHHHHCCTTCEEEEESCSCSSCHHHHHHHHHHHHHHHHHTTCCEEEEEESCGGGGGGGGTCTTEEEEEEEEEEETTE
T ss_pred HHHHHHHhccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEcCcHHHHHHhcccceeEeeEEEEEecCCc
Confidence 888888 899999999999999999877666 44555544 3789999999988888899999999999998888776
Q ss_pred H
Q 000984 607 L 607 (1198)
Q Consensus 607 l 607 (1198)
+
T Consensus 811 l 811 (934)
T 3thx_A 811 L 811 (934)
T ss_dssp E
T ss_pred E
Confidence 5
|
| >3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=5.6e-18 Score=181.49 Aligned_cols=140 Identities=11% Similarity=0.111 Sum_probs=105.7
Q ss_pred EeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcceEEEcCCCCCCc---ccHHHHHhcCC-
Q 000984 409 ISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFT---GSIKDNIAYGK- 484 (1198)
Q Consensus 409 i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~~---~ti~~Ni~~~~- 484 (1198)
.++|++++|+||+|||||||+++|.|++.| +++|++|++.++. -|+++|+.+..
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~~----------------------~i~~v~~d~~~~~~~~~~~~~~~~~~~~ 60 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTLAQALARTLGE----------------------RVALLPMDHYYKDLGHLPLEERLRVNYD 60 (211)
T ss_dssp --CCEEEEEEESTTSSHHHHHHHHHHHHGG----------------------GEEEEEGGGCBCCCTTSCHHHHHHSCTT
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHhCC----------------------CeEEEecCccccCcccccHHHhcCCCCC
Confidence 478999999999999999999999998864 5899999998874 36777766532
Q ss_pred -C-CCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHH----HHHHhHHHhhccCCCEEEEeCCCCC------
Q 000984 485 -D-DATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQ----KQRIAIARAILKDPRILLLDEATSA------ 552 (1198)
Q Consensus 485 -~-~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGq----kqri~lARal~~~~~illlDe~ts~------ 552 (1198)
+ ..+.+++.+.++..++. ..+...+..+|+|| +||+++||+++.+|+++++||||++
T Consensus 61 ~~~~~~~~~~~~~l~~~~~~-----------~~~~~~~~~~s~g~~~~~~~~~~~~~~li~~~~ll~~de~~~~~~d~~i 129 (211)
T 3asz_A 61 HPDAFDLALYLEHAQALLRG-----------LPVEMPVYDFRAYTRSPRRTPVRPAPVVILEGILVLYPKELRDLMDLKV 129 (211)
T ss_dssp SGGGBCHHHHHHHHHHHHTT-----------CCEEECCEETTTTEECSSCEEECCCSEEEEESTTTTSSHHHHTTCSEEE
T ss_pred ChhhhhHHHHHHHHHHHHcC-----------CCcCCCcccCcccCCCCCeEEeCCCcEEEEeehhhccCHHHHHhcCEEE
Confidence 2 12334555554433221 12223355678885 5799999999999999999999999
Q ss_pred -CCHHhHHHHHHHHHHHh--CCCeEEEEecCc
Q 000984 553 -LDAESEKVVQEALDRIM--VNRTTVIVAHRL 581 (1198)
Q Consensus 553 -lD~~~~~~i~~~i~~~~--~~~t~i~itH~~ 581 (1198)
||+..+..+.+.+.+.. +++|++.++|+.
T Consensus 130 ~ld~~~~~~~~r~l~r~~~~~g~t~~~~~~~~ 161 (211)
T 3asz_A 130 FVDADADERFIRRLKRDVLERGRSLEGVVAQY 161 (211)
T ss_dssp EEECCHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred EEeCCHHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 99999988888887642 578999999984
|
| >1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.59 E-value=1.6e-15 Score=180.36 Aligned_cols=73 Identities=21% Similarity=0.306 Sum_probs=67.0
Q ss_pred CCChHHHHHHhHHHhhc----cCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhC-CCeEEEEecCcchhhccCEEEEEe
Q 000984 522 QLSGGQKQRIAIARAIL----KDPRILLLDEATSALDAESEKVVQEALDRIMV-NRTTVIVAHRLSTVRNADMIAVIH 594 (1198)
Q Consensus 522 ~lSgGqkqri~lARal~----~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~-~~t~i~itH~~~~~~~~d~i~~l~ 594 (1198)
.||||||||++|||++. ++|+++||||||++||+.....+.+.|.+..+ +.++|++||+...+..||+++++.
T Consensus 333 ~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~~ii~th~~~~~~~~d~~~~~~ 410 (430)
T 1w1w_A 333 YLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKNTMFEKSDALVGVY 410 (430)
T ss_dssp GSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCHHHHTTCSEEEEEE
T ss_pred cCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHHHHhcCCCEEEEEECCHHHHHhCCEEEEEE
Confidence 49999999999999998 68999999999999999999999999988753 679999999988888899999985
|
| >4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=3.8e-16 Score=169.56 Aligned_cols=152 Identities=17% Similarity=0.257 Sum_probs=100.1
Q ss_pred EEeCCCEEEEEcCCCCcHHHHHHHHhccCCC-------CCCeEEECCeecCCcCHHHHhcceEEEcCCCCCCcccHHHHH
Q 000984 408 SISSGTTAALVGQSGSGKSTVISLIERFYDP-------QAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNI 480 (1198)
Q Consensus 408 ~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~-------~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~Ni 480 (1198)
-+++|++++|+||||||||||++.|+|.+.+ ..|.+.+++.+. .. ++++++++|+..++..|+.+|+
T Consensus 21 gi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~--~~----~~~i~~~~~~~~~~~~~~~~~~ 94 (231)
T 4a74_A 21 GIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENT--FR----PERIREIAQNRGLDPDEVLKHI 94 (231)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSC--CC----HHHHHHHHHHTTSCHHHHHHTE
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCC--CC----HHHHHHHHHHcCCCHHHHhhcE
Confidence 6899999999999999999999999997655 445778877542 11 2357778888888877999998
Q ss_pred hcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhh--ccCCCEEEEeCCCCCCCHHh-
Q 000984 481 AYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAI--LKDPRILLLDEATSALDAES- 557 (1198)
Q Consensus 481 ~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal--~~~~~illlDe~ts~lD~~~- 557 (1198)
.+.......+.. ...+. +.+.+. +++ ..+|++++|||||+.+|++.
T Consensus 95 ~~~~~~~~~~~~-~~~~~--~~~~~~----------------------------~~~~~~~~~~llilDe~~~~l~~~~~ 143 (231)
T 4a74_A 95 YVARAFNSNHQM-LLVQQ--AEDKIK----------------------------ELLNTDRPVKLLIVDSLTSHFRSEYI 143 (231)
T ss_dssp EEEECCSHHHHH-HHHHH--HHHHHH----------------------------HHTTSSSCEEEEEEETSSHHHHHHSC
T ss_pred EEEecCChHHHH-HHHHH--HHHHHH----------------------------HhcccCCceeEEEECChHHHhccccC
Confidence 875432221111 11100 111111 111 35899999999999999842
Q ss_pred ------H-----HHHHHHHHHHh--CCCeEEEEecC----cchhhc-cCEEEEEeCC
Q 000984 558 ------E-----KVVQEALDRIM--VNRTTVIVAHR----LSTVRN-ADMIAVIHRG 596 (1198)
Q Consensus 558 ------~-----~~i~~~i~~~~--~~~t~i~itH~----~~~~~~-~d~i~~l~~G 596 (1198)
+ ..+.+.+.++. .++|+|++||. ...+.. ||++++|++|
T Consensus 144 ~~~~~~~r~~~~~~~~~~l~~~~~~~g~tvi~vtH~~~~~g~~~~~~~d~~l~l~~~ 200 (231)
T 4a74_A 144 GRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQANGGHILAHSATLRVYLRKG 200 (231)
T ss_dssp STTHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC---------CCSEEEEEEEC
T ss_pred CCcchhHHHHHHHHHHHHHHHHHHHCCCeEEEEeecccCcchhhHhhceEEEEEEec
Confidence 1 13444554443 37999999994 444665 8999999875
|
| >3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B | Back alignment and structure |
|---|
Probab=99.58 E-value=5.8e-17 Score=199.74 Aligned_cols=190 Identities=18% Similarity=0.286 Sum_probs=121.8
Q ss_pred cEEEEeEEEEcCCCCCCccccce----------eEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCC-CCCeEEECCeecC
Q 000984 383 DIELRDVYFSYPARPNEQIFSGF----------SISISSGTTAALVGQSGSGKSTVISLIERFYDP-QAGEVLIDGINLK 451 (1198)
Q Consensus 383 ~i~~~~v~~~y~~~~~~~~l~~i----------~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~-~~G~i~i~g~~~~ 451 (1198)
.++++|+++.|+.. .+++|+.+ +++++. ++|+||+|||||||+++|.|++.| .+|.|.++|.++.
T Consensus 10 ~i~~~~l~~~~~~~-~r~ll~~id~l~~~gv~~~l~lp~---iaIvG~nGsGKSTLL~~I~Gl~~P~~sG~vt~~g~~i~ 85 (608)
T 3szr_A 10 SVAENNLCSQYEEK-VRPCIDLIDSLRALGVEQDLALPA---IAVIGDQSSGKSSVLEALSGVALPRGSGIVTRCPLVLK 85 (608)
T ss_dssp ----------CHHH-HHHHHHHHHHHHHHSCCSSCCCCC---EECCCCTTSCHHHHHHHHHSCC-------CCCSCEEEE
T ss_pred hhhhhhhhHHHHHH-HHHHHHHHHHHHhCCCCCcccCCe---EEEECCCCChHHHHHHHHhCCCCCCCCCeEEEcCEEEE
Confidence 47899999999632 23455444 366654 999999999999999999999988 7999999999863
Q ss_pred Cc---CHHHHhcceEEEcCCCCCCc-ccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHH
Q 000984 452 EF---QLQWIRKKIGLVSQEPVLFT-GSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQ 527 (1198)
Q Consensus 452 ~~---~~~~~r~~i~~v~Q~~~l~~-~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGq 527 (1198)
.. ....+|++++|++|++.++. .||++||.++. +.+. + .+..+|
T Consensus 86 ~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~i~~~~------------------~~~~----~-------~~~~~s--- 133 (608)
T 3szr_A 86 LKKLVNEDKWRGKVSYQDYEIEISDASEVEKEINKAQ------------------NAIA----G-------EGMGIS--- 133 (608)
T ss_dssp EEECSSSSCCEEEESCC---CCCCCHHHHHTTHHHHH------------------HHHH----C-------SSSCCC---
T ss_pred EecCCccccceeEEeeecccccCCCHHHHHHHHHHHH------------------HHhc----C-------Cccccc---
Confidence 21 23467889999999998874 68999986420 0010 0 111122
Q ss_pred HHHHhHHHhhccCCCEEEEeCC------CCCCCHHhHHHHHHHHHHHhC---CCeEEEEecCcchh--------hc----
Q 000984 528 KQRIAIARAILKDPRILLLDEA------TSALDAESEKVVQEALDRIMV---NRTTVIVAHRLSTV--------RN---- 586 (1198)
Q Consensus 528 kqri~lARal~~~~~illlDe~------ts~lD~~~~~~i~~~i~~~~~---~~t~i~itH~~~~~--------~~---- 586 (1198)
++++.++.+...+|+++|+||| |+++|+...+.+.+.++++.+ +-++++++|.++.. ..
T Consensus 134 ~~~i~l~i~~~~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a~~~~l~la~~v~~~ 213 (608)
T 3szr_A 134 HELITLEISSRDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIATTEALSMAQEVDPE 213 (608)
T ss_dssp SCCEEEEEEESSSCCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTTTCHHHHHHHHHCSS
T ss_pred hHHHHHHhcCCCCCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhccHHHHHHHHHHhhc
Confidence 3556667777789999999999 999999999999999988643 34667789987632 11
Q ss_pred -cCEEEEEeCCEEEEecChhhHh
Q 000984 587 -ADMIAVIHRGKIVEKGTHSKLV 608 (1198)
Q Consensus 587 -~d~i~~l~~G~i~~~g~~~~l~ 608 (1198)
...|+|+.++.+++.|+.+++.
T Consensus 214 g~rtI~VlTK~Dlv~~g~~~~~~ 236 (608)
T 3szr_A 214 GDRTIGILTKPDLVDKGTEDKVV 236 (608)
T ss_dssp CCSEEEEEECGGGSSSSSTTCCC
T ss_pred CCceEEEecchhhcCcccHHHHH
Confidence 3568899988888888765544
|
| >3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=7.9e-16 Score=176.28 Aligned_cols=147 Identities=20% Similarity=0.233 Sum_probs=105.1
Q ss_pred EeEEEEcCCCCCCccccceeE-------EEeCCCEEEEEcCCCCcHHHHHHHHhccCCCC-CCeEEECCeecCCcCHHHH
Q 000984 387 RDVYFSYPARPNEQIFSGFSI-------SISSGTTAALVGQSGSGKSTVISLIERFYDPQ-AGEVLIDGINLKEFQLQWI 458 (1198)
Q Consensus 387 ~~v~~~y~~~~~~~~l~~i~l-------~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~-~G~i~i~g~~~~~~~~~~~ 458 (1198)
.+++++|... ..+.|+++.+ ...+|+.++|+||||||||||+++|+|+++|. +|.|...+ |..++. +
T Consensus 92 ~~~~iR~~~~-~~~~l~~lg~~~~l~~l~~~~~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~e-d~~e~~---~ 166 (356)
T 3jvv_A 92 AGAVFRTIPS-KVLTMEELGMGEVFKRVSDVPRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIE-DPIEFV---H 166 (356)
T ss_dssp EEEEEEEECC-SCCCTTTTTCCHHHHHHHHCSSEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEE-SSCCSC---C
T ss_pred cEEEEEECCC-CCCCHHHcCChHHHHHHHhCCCCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEcc-CcHHhh---h
Confidence 5677787543 3567777776 77899999999999999999999999999987 56664433 222221 1
Q ss_pred hcceEEEcCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhhc
Q 000984 459 RKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAIL 538 (1198)
Q Consensus 459 r~~i~~v~Q~~~l~~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal~ 538 (1198)
+...++++|.+.-.. ..+.. + +|||||.
T Consensus 167 ~~~~~~v~q~~~~~~------------~~~~~------------------------------------~----~La~aL~ 194 (356)
T 3jvv_A 167 ESKKCLVNQREVHRD------------TLGFS------------------------------------E----ALRSALR 194 (356)
T ss_dssp CCSSSEEEEEEBTTT------------BSCHH------------------------------------H----HHHHHTT
T ss_pred hccccceeeeeeccc------------cCCHH------------------------------------H----HHHHHhh
Confidence 223455555432110 00110 0 9999999
Q ss_pred cCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhCCCeEEEEecCcchhhccCEEEEEeCC
Q 000984 539 KDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRG 596 (1198)
Q Consensus 539 ~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G 596 (1198)
++|+++++|||| |.++.+.+.++ ...++|+++++|..+.+..+||+++|..|
T Consensus 195 ~~PdvillDEp~---d~e~~~~~~~~---~~~G~~vl~t~H~~~~~~~~dRli~l~~~ 246 (356)
T 3jvv_A 195 EDPDIILVGEMR---DLETIRLALTA---AETGHLVFGTLHTTSAAKTIDRVVDVFPA 246 (356)
T ss_dssp SCCSEEEESCCC---SHHHHHHHHHH---HHTTCEEEEEESCSSHHHHHHHHHHTSCH
T ss_pred hCcCEEecCCCC---CHHHHHHHHHH---HhcCCEEEEEEccChHHHHHHHHhhhcCc
Confidence 999999999999 77775554443 34589999999999999889999888544
|
| >1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D* | Back alignment and structure |
|---|
Probab=99.54 E-value=2.1e-15 Score=169.30 Aligned_cols=151 Identities=23% Similarity=0.209 Sum_probs=102.1
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcC----HHHH--hcceEEEcCCCCCCc-ccHHHHHhcC
Q 000984 411 SGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQ----LQWI--RKKIGLVSQEPVLFT-GSIKDNIAYG 483 (1198)
Q Consensus 411 ~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~----~~~~--r~~i~~v~Q~~~l~~-~ti~~Ni~~~ 483 (1198)
+|++++|+||||||||||++.|.|++.|++|+|.++|.|+.... +..+ |..+++++|++.++. .|+++|+.++
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v~~~ 180 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAVQAM 180 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHHH
Confidence 68999999999999999999999999999999999999986543 2222 457999999998774 5888888642
Q ss_pred CCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhhccCCCEEEEeCCCCCCCHHhHHHHHH
Q 000984 484 KDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQE 563 (1198)
Q Consensus 484 ~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~ 563 (1198)
.. +... ..+-..++..+. ....++..+|||.+||||+..+|+.++| .||+.+...+.+
T Consensus 181 ~~-----------~~~d--~~llDt~G~~~~----~~~~~~eLs~~r~~iaRal~~~P~~~lL-----vLDa~t~~~~~~ 238 (304)
T 1rj9_A 181 KA-----------RGYD--LLFVDTAGRLHT----KHNLMEELKKVKRAIAKADPEEPKEVWL-----VLDAVTGQNGLE 238 (304)
T ss_dssp HH-----------HTCS--EEEECCCCCCTT----CHHHHHHHHHHHHHHHHHCTTCCSEEEE-----EEETTBCTHHHH
T ss_pred Hh-----------CCCC--EEEecCCCCCCc----hHHHHHHHHHHHHHHHHhhcCCCCeEEE-----EEcHHHHHHHHH
Confidence 10 0000 000011111111 1112466779999999999999994444 344444333444
Q ss_pred HHHHHh--CCCeEEEEecCcch
Q 000984 564 ALDRIM--VNRTTVIVAHRLST 583 (1198)
Q Consensus 564 ~i~~~~--~~~t~i~itH~~~~ 583 (1198)
.++.+. .+.|+|++||.-..
T Consensus 239 ~~~~~~~~~~~t~iivTh~d~~ 260 (304)
T 1rj9_A 239 QAKKFHEAVGLTGVIVTKLDGT 260 (304)
T ss_dssp HHHHHHHHHCCSEEEEECTTSS
T ss_pred HHHHHHHHcCCcEEEEECCccc
Confidence 444332 27899999998543
|
| >2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis} | Back alignment and structure |
|---|
Probab=99.54 E-value=5.4e-17 Score=187.57 Aligned_cols=149 Identities=13% Similarity=0.083 Sum_probs=113.2
Q ss_pred EEEeEEEE---cCCCCCCccc---------cceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCC
Q 000984 385 ELRDVYFS---YPARPNEQIF---------SGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKE 452 (1198)
Q Consensus 385 ~~~~v~~~---y~~~~~~~~l---------~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~ 452 (1198)
+|+|++|+ |+.. ++++| +++||.+++|+.++|+||||||||||+++|+|+++|.+|.|.++|. .+
T Consensus 137 ~f~~v~f~~~~Y~~~-~~~vL~~~~~~~~~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~~~g~I~ie~~--~e 213 (361)
T 2gza_A 137 FFKHVRPMSKSLTPF-EQELLALKEAGDYMSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIPFDQRLITIEDV--PE 213 (361)
T ss_dssp TTSCCCCSCSCCCHH-HHHHHHHHHHTCHHHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSCTTSCEEEEESS--SC
T ss_pred CcCccccccccccch-hHHHHhhhhhHHHHHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCCCCceEEEECCc--cc
Confidence 78899998 8532 23455 9999999999999999999999999999999999999999999985 45
Q ss_pred cCHHHHhcceEEEc-CCCCC---CcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHH
Q 000984 453 FQLQWIRKKIGLVS-QEPVL---FTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQK 528 (1198)
Q Consensus 453 ~~~~~~r~~i~~v~-Q~~~l---~~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqk 528 (1198)
+.....+..+++++ |++.+ +..|+++||..+.....+..+...++..++.++++.+|.|.+|.+++-+.+-..+..
T Consensus 214 ~~~~~~~~~v~~v~~q~~~~~~~~~~t~~~~i~~~l~~~pd~~l~~e~r~~~~~~~l~~l~~g~~~~l~t~H~~~~~~~~ 293 (361)
T 2gza_A 214 LFLPDHPNHVHLFYPSEAKEEENAPVTAATLLRSCLRMKPTRILLAELRGGEAYDFINVAASGHGGSITSCHAGSCELTF 293 (361)
T ss_dssp CCCTTCSSEEEEECC----------CCHHHHHHHHTTSCCSEEEESCCCSTHHHHHHHHHHTTCCSCEEEEECSSHHHHH
T ss_pred cCccccCCEEEEeecCccccccccccCHHHHHHHHHhcCCCEEEEcCchHHHHHHHHHHHhcCCCeEEEEECCCCHHHHH
Confidence 55555678899999 98876 788999999976543333222222233445678888999999989888777788899
Q ss_pred HHHhHHHh
Q 000984 529 QRIAIARA 536 (1198)
Q Consensus 529 qri~lARa 536 (1198)
+|+.....
T Consensus 294 ~Rl~~l~~ 301 (361)
T 2gza_A 294 ERLALMVL 301 (361)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHh
Confidence 99987753
|
| >2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.53 E-value=6.2e-16 Score=180.37 Aligned_cols=166 Identities=16% Similarity=0.182 Sum_probs=99.5
Q ss_pred ccEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcc
Q 000984 382 GDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKK 461 (1198)
Q Consensus 382 g~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~ 461 (1198)
+.|.++|++++|+. ..+++|++|+| +|+|+||||||||++.|+|...+..| .+|.++.... ...+..
T Consensus 10 ~~l~~~~l~~~y~~---~~vl~~vsf~I------~lvG~sGaGKSTLln~L~g~~~~~~~---~~~~~~~~~~-t~~~~~ 76 (418)
T 2qag_C 10 GYVGFANLPNQVYR---KSVKRGFEFTL------MVVGESGLGKSTLINSLFLTDLYSPE---YPGPSHRIKK-TVQVEQ 76 (418)
T ss_dssp -----CCCCCCTTT---TTCC-CCCEEE------EEECCTTSSHHHHHHHHTTCCCCCCC---CCSCC------CCEEEE
T ss_pred CcEEEEecceeECC---EEEecCCCEEE------EEECCCCCcHHHHHHHHhCCCCCCCC---CCCcccCCcc-ceeeee
Confidence 45899999999963 46999999997 99999999999999999999876555 1333222111 111356
Q ss_pred eEEEcCCCCCC-cccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhhccC
Q 000984 462 IGLVSQEPVLF-TGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKD 540 (1198)
Q Consensus 462 i~~v~Q~~~l~-~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal~~~ 540 (1198)
+++++|++.++ ..||.||+.++... ..++.+.. +.+++.. .++.+++||++||||++++
T Consensus 77 i~~v~q~~~~~~~Ltv~Dt~g~~~~~-~~~~~~~~-----i~~~i~~--------------~~~~~l~qr~~IaRal~~d 136 (418)
T 2qag_C 77 SKVLIKEGGVQLLLTIVDTPGFGDAV-DNSNCWQP-----VIDYIDS--------------KFEDYLNAESRVNRRQMPD 136 (418)
T ss_dssp EECC------CEEEEEEECC------------CHH-----HHHHHHH--------------HHHHHTTTSCC-CCCCCCC
T ss_pred EEEEEecCCcccceeeeechhhhhhc-cchhhHHH-----HHHHHHH--------------HHHHHHHHHHHHHHHhccC
Confidence 89999998776 67999999876532 11111111 1122221 2345667899999999999
Q ss_pred CC---EEEEeCCC-CCCCHHhHHHHHHHHHHHhCCCeEEEEecCcchh
Q 000984 541 PR---ILLLDEAT-SALDAESEKVVQEALDRIMVNRTTVIVAHRLSTV 584 (1198)
Q Consensus 541 ~~---illlDe~t-s~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~ 584 (1198)
|+ ++++|||| +++|+..... ++.+..+.++|+|.|+.+.+
T Consensus 137 ~~~~vlL~ldePt~~~L~~~d~~~----lk~L~~~v~iIlVinK~Dll 180 (418)
T 2qag_C 137 NRVQCCLYFIAPSGHGLKPLDIEF----MKRLHEKVNIIPLIAKADTL 180 (418)
T ss_dssp C-CCEEEEECCC-CCSCCHHHHHH----HHHHTTTSEEEEEEESTTSS
T ss_pred CCeeEEEEEecCcccCCCHHHHHH----HHHHhccCcEEEEEEcccCc
Confidence 99 99999999 6999876433 33334578899999987654
|
| >3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B* | Back alignment and structure |
|---|
Probab=99.53 E-value=1.8e-14 Score=147.23 Aligned_cols=79 Identities=25% Similarity=0.301 Sum_probs=70.8
Q ss_pred CCCCChHHHHHHhHHHhhc----cCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhCCCeEEEEecCcchhhccCEEEEE--
Q 000984 520 GTQLSGGQKQRIAIARAIL----KDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVI-- 593 (1198)
Q Consensus 520 g~~lSgGqkqri~lARal~----~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~~d~i~~l-- 593 (1198)
...||||||||++|||++. ++|+++||||||++||+.+.+.+.+.|+++.++.++|+|||+...+..||+++.+
T Consensus 62 ~~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~~~~~ivith~~~~~~~ad~i~~v~~ 141 (173)
T 3kta_B 62 IEAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSKESQFIVITLRDVMMANADKIIGVSM 141 (173)
T ss_dssp GGGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSCHHHHTTCSEEEEEEE
T ss_pred cccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHhccCCEEEEEEecHHHHHhCCEEEEEEe
Confidence 3679999999999999995 5679999999999999999999999999988888999999999988899999865
Q ss_pred eCCEE
Q 000984 594 HRGKI 598 (1198)
Q Consensus 594 ~~G~i 598 (1198)
++|..
T Consensus 142 ~~g~s 146 (173)
T 3kta_B 142 RDGVS 146 (173)
T ss_dssp ETTEE
T ss_pred cCCEE
Confidence 56643
|
| >1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.52 E-value=4.2e-16 Score=166.54 Aligned_cols=169 Identities=14% Similarity=0.215 Sum_probs=99.9
Q ss_pred EEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccC-----CCCCCeEEE-------CCeecC
Q 000984 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFY-----DPQAGEVLI-------DGINLK 451 (1198)
Q Consensus 384 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~-----~~~~G~i~i-------~g~~~~ 451 (1198)
|+++|++|.|+ .+++++ |++++|.+++|+|++|||||||++.|.|.. .|+.|.+.. ++..+-
T Consensus 4 l~~~~~~~~~~----~~~l~~--~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~~~~l~ 77 (210)
T 1pui_A 4 LNYQQTHFVMS----APDIRH--LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLV 77 (210)
T ss_dssp -------CEEE----ESSGGG--SSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEETTEEEE
T ss_pred hhhhhhhheee----cCCHhH--CCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecCCEEEE
Confidence 78999999995 257888 899999999999999999999999999988 788887654 222221
Q ss_pred ---CcC--------HHHHhcceEEEcCCCCCCcc-cHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccc-hhcC
Q 000984 452 ---EFQ--------LQWIRKKIGLVSQEPVLFTG-SIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDT-LVGE 518 (1198)
Q Consensus 452 ---~~~--------~~~~r~~i~~v~Q~~~l~~~-ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t-~v~~ 518 (1198)
... .+.+++.++++.|++..+.+ .+..++..+.. ..++++.+ .+... +... .++.
T Consensus 78 Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~-~~~~~~~~---------~~~~~--~~~~~~v~n 145 (210)
T 1pui_A 78 DLPGYGYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLK-DLDQQMIE---------WAVDS--NIAVLVLLT 145 (210)
T ss_dssp ECCCCC------CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCC-HHHHHHHH---------HHHHT--TCCEEEEEE
T ss_pred ECcCCcccccCHHHHHHHHHHHHHHHHhhhcccEEEEEEECCCCCc-hhHHHHHH---------HHHHc--CCCeEEEEe
Confidence 110 12234444445443322221 22222222111 01112221 12111 2322 2466
Q ss_pred CCCCCChHHHHH-HhHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhC
Q 000984 519 HGTQLSGGQKQR-IAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMV 570 (1198)
Q Consensus 519 ~g~~lSgGqkqr-i~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~ 570 (1198)
+...+|+||||| +..+|+++.+|+.+++|||||++|......+.+.|.+..+
T Consensus 146 K~D~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~~~ 198 (210)
T 1pui_A 146 KADKLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTWFS 198 (210)
T ss_dssp CGGGSCHHHHHHHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHHHHHC
T ss_pred cccCCCchhHHHHHHHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHHHHHh
Confidence 666799999999 8999999999999999999999999998888888877643
|
| >2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=7.1e-16 Score=173.72 Aligned_cols=162 Identities=17% Similarity=0.178 Sum_probs=78.2
Q ss_pred EeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcc-CCCCCCeEEECCeecCCcCHHHHhcceEEE
Q 000984 387 RDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERF-YDPQAGEVLIDGINLKEFQLQWIRKKIGLV 465 (1198)
Q Consensus 387 ~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~-~~~~~G~i~i~g~~~~~~~~~~~r~~i~~v 465 (1198)
+|+++.|+. +.++++++|+| +|+|++|||||||++.|+|. ..|.+| |.++|.++.. .. . +..++++
T Consensus 2 ~~l~~~~~~---~~~l~~~~~~I------~lvG~nG~GKSTLl~~L~g~~~~~~~g-i~~~g~~~~~-t~-~-~~~~~~~ 68 (301)
T 2qnr_A 2 SNLPNQVHR---KSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPERV-ISGAAEKIER-TV-Q-IEASTVE 68 (301)
T ss_dssp -------------------CEEE------EEEEETTSSHHHHHHHHHC----------------------------CEEE
T ss_pred CCCcceECC---EEEEcCCCEEE------EEECCCCCCHHHHHHHHhCCCccCCCC-cccCCcccCC-cc-e-EeeEEEE
Confidence 477888853 46999999988 99999999999999999997 889999 8888877643 11 1 3568999
Q ss_pred cCCCCCC-cccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhhccCCCEE
Q 000984 466 SQEPVLF-TGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRIL 544 (1198)
Q Consensus 466 ~Q~~~l~-~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal~~~~~il 544 (1198)
+|++.++ .-|+.|+..++......++.... .+.+.. -.+..+ .++|||||||+++|||+. ++
T Consensus 69 ~q~~~~~~~ltv~Dt~g~~~~~~~~e~~~~l------~~~l~~---~~~~~~----~~~sgg~rqrv~~ara~~----ll 131 (301)
T 2qnr_A 69 IEERGVKLRLTVVDTPGYGDAINCRDCFKTI------ISYIDE---QFERYL----HDESGLNRRHIIDNRVHC----CF 131 (301)
T ss_dssp EC---CCEEEEEEEEC-----------CTTH------HHHHHH---HHHHHH----HHHTSSCCTTCCCCCCCE----EE
T ss_pred ecCCCcccCcchhhhhhhhhhcCcHHHHHHH------HHHHHH---HHHHHH----HHhCHHhhhhhhhhhhhh----ee
Confidence 9987654 56888887765321111111111 111111 011222 358999999999999985 99
Q ss_pred EEeCCCCC-CCHHhHHHHHHHHHHHhC--CCeEEEEecCcc
Q 000984 545 LLDEATSA-LDAESEKVVQEALDRIMV--NRTTVIVAHRLS 582 (1198)
Q Consensus 545 llDe~ts~-lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~ 582 (1198)
++||||++ ||+... +.++.+.+ +.++|+..|++.
T Consensus 132 ~ldePt~~~Ld~~~~----~~l~~l~~~~~iilV~~K~Dl~ 168 (301)
T 2qnr_A 132 YFISPFGHGLKPLDV----AFMKAIHNKVNIVPVIAKADTL 168 (301)
T ss_dssp EEECSSSSSCCHHHH----HHHHHHTTTSCEEEEECCGGGS
T ss_pred eeecCcccCCCHHHH----HHHHHHHhcCCEEEEEEeCCCC
Confidence 99999985 999863 33444333 345666667764
|
| >1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=99.51 E-value=2e-16 Score=176.59 Aligned_cols=129 Identities=12% Similarity=0.066 Sum_probs=93.7
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcceEEEcCCCCCCcccHHHHHhcCCCCC---
Q 000984 411 SGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDA--- 487 (1198)
Q Consensus 411 ~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~Ni~~~~~~~--- 487 (1198)
++.+++|+|++|||||||++.|.+++.+. | . . ++.+.+|+||+++++.++++|+.++.++.
T Consensus 30 ~~~ii~I~G~sGsGKSTla~~L~~~l~~~-g------~--------~-~~~~~iv~~D~f~~~~~~~~~l~~~~~~~~l~ 93 (290)
T 1odf_A 30 CPLFIFFSGPQGSGKSFTSIQIYNHLMEK-Y------G--------G-EKSIGYASIDDFYLTHEDQLKLNEQFKNNKLL 93 (290)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHH-H------G--------G-GSCEEEEEGGGGBCCHHHHHHHHHHTTTCGGG
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhhhc-C------C--------C-CceEEEeccccccCChHHHHHHhccccccchh
Confidence 46799999999999999999999998763 2 0 0 34566679999999999999997653210
Q ss_pred CHHHHHHHHHHhcHHHHHHhCCCCccch------hcCCCCCCChHHHHHHhHH--HhhccCCCEEEEeCCCCCCCHHh
Q 000984 488 TTEEIRVATELANAAKFIDKLPQGIDTL------VGEHGTQLSGGQKQRIAIA--RAILKDPRILLLDEATSALDAES 557 (1198)
Q Consensus 488 ~~~~~~~~~~~~~~~~~i~~l~~g~~t~------v~~~g~~lSgGqkqri~lA--Ral~~~~~illlDe~ts~lD~~~ 557 (1198)
.....-.+.+...+.+++..++.|++|. +...+.++||||+||+++| |++ +|+|+|+||+++++|++.
T Consensus 94 ~~~g~p~a~d~~~l~~~l~~l~~g~~t~~~~~v~~p~y~~~~sgGq~~R~~~a~~~~~--~~~IlIlEG~~~~ld~~~ 169 (290)
T 1odf_A 94 QGRGLPGTHDMKLLQEVLNTIFNNNEHPDQDTVVLPKYDKSQFKGEGDRCPTGQKIKL--PVDIFILEGWFLGFNPIL 169 (290)
T ss_dssp SSSCSTTSBCHHHHHHHHHHHTC------CCEEEECCEETTHHHHTCEECSSCEEEES--SCSEEEEEESSTTCCCCC
T ss_pred hhccCcchhHHHHHHHHHHHhhccCccccCcceeeccCccccCCccccccccccceEc--CCCEEEEeCccccCCccc
Confidence 0000011112334567788899997653 4566789999999999998 666 999999999999999875
|
| >2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2} | Back alignment and structure |
|---|
Probab=99.48 E-value=2.1e-14 Score=155.97 Aligned_cols=166 Identities=15% Similarity=0.055 Sum_probs=110.6
Q ss_pred CccccceeE-EEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhc---ceEEEcCCCCCCcc
Q 000984 399 EQIFSGFSI-SISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRK---KIGLVSQEPVLFTG 474 (1198)
Q Consensus 399 ~~~l~~i~l-~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~---~i~~v~Q~~~l~~~ 474 (1198)
-+.|+++.. .+++|+.++|+||+|||||||++.|++...+.+|.+.+.+.+. +.+.++. .+++.+|+..-
T Consensus 9 ~~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~~~---~~~~~~~~~~~~~~~~~~~~~--- 82 (235)
T 2w0m_A 9 ILDFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTEE---SRDSIIRQAKQFNWDFEEYIE--- 82 (235)
T ss_dssp CHHHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEESSS---CHHHHHHHHHHTTCCCGGGBT---
T ss_pred chHHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEccc---CHHHHHHHHHHhcchHHHHhh---
Confidence 457888887 8999999999999999999999999998888888887765433 2222222 23333332110
Q ss_pred cHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhhccCCC--EEEEeCCCCC
Q 000984 475 SIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPR--ILLLDEATSA 552 (1198)
Q Consensus 475 ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal~~~~~--illlDe~ts~ 552 (1198)
+++.+-.. ... .. + ...+. ...|.+|.++...+.+...+|+ ++++||||+.
T Consensus 83 ---~~~~~~~~-~~~--------------~~-----~-~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~ 135 (235)
T 2w0m_A 83 ---KKLIIIDA-LMK--------------EK-----E-DQWSL---VNLTPEELVNKVIEAKQKLGYGKARLVIDSVSAL 135 (235)
T ss_dssp ---TTEEEEEC-CC------------------------CTTBC---SSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGG
T ss_pred ---CCEEEEec-ccc--------------cc-----C-ceeee---cCCCHHHHHHHHHHHHHhhCCCceEEEEECchHh
Confidence 01110000 000 00 0 00011 1348999988888877778999 9999999988
Q ss_pred C--CHHhHHHHHHHHHHHh--CCCeEEEEecCc--------chhhc-cCEEEEEeCCE
Q 000984 553 L--DAESEKVVQEALDRIM--VNRTTVIVAHRL--------STVRN-ADMIAVIHRGK 597 (1198)
Q Consensus 553 l--D~~~~~~i~~~i~~~~--~~~t~i~itH~~--------~~~~~-~d~i~~l~~G~ 597 (1198)
+ |+...+.+.+.++++. .+.|+|+++|.. ..+.. ||+|++|++.+
T Consensus 136 ~~~d~~~~~~~~~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~d~vi~l~~~~ 193 (235)
T 2w0m_A 136 FLDKPAMARKISYYLKRVLNKWNFTIYATSQYAITTSQAFGFGVEHVADGIIRFRRMI 193 (235)
T ss_dssp SSSCGGGHHHHHHHHHHHHHHTTEEEEEEEC-----------CHHHHCSEEEEEEEEE
T ss_pred hcCCHHHHHHHHHHHHHHHHhCCCeEEEEeccCcccccccccchheeeeEEEEEEEEe
Confidence 8 9887777777777664 378999999998 34554 99999998653
|
| >3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B* | Back alignment and structure |
|---|
Probab=99.47 E-value=1.2e-14 Score=183.98 Aligned_cols=169 Identities=15% Similarity=0.135 Sum_probs=107.8
Q ss_pred ccEEEEeEEEEcC----CCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHH
Q 000984 382 GDIELRDVYFSYP----ARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQW 457 (1198)
Q Consensus 382 g~i~~~~v~~~y~----~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~ 457 (1198)
+.|.+++...-.= ...++.+++|++|++++|++++|+||||||||||++.+.+..-..
T Consensus 639 ~~i~i~~~rHP~le~~~~~~~~~V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i~~~a------------------ 700 (918)
T 3thx_B 639 RKIVIKNGRHPVIDVLLGEQDQYVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVALITIMA------------------ 700 (918)
T ss_dssp CEEEEEEECCHHHHHHTCSCSSSCCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHHHHHHH------------------
T ss_pred CcEEEEeccchhhhhhhccCCceecccccccCCCCeEEEEECCCCCchHHHHHHHHHHHHHh------------------
Confidence 3577777543220 112467999999999999999999999999999999987532110
Q ss_pred HhcceEEEcCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhh
Q 000984 458 IRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAI 537 (1198)
Q Consensus 458 ~r~~i~~v~Q~~~l~~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal 537 (1198)
..-.++|++..-+ .+.+++. . ..++.+ .+..+-..+|+|++|+..++|+
T Consensus 701 --q~g~~vpa~~~~i--~~~d~i~-~--------------~ig~~d-----------~l~~~~stfs~em~~~~~il~~- 749 (918)
T 3thx_B 701 --QIGSYVPAEEATI--GIVDGIF-T--------------RMGAAD-----------NIYKGRSTFMEELTDTAEIIRK- 749 (918)
T ss_dssp --HHTCCBSSSEEEE--ECCSEEE-E--------------EC---------------------CCHHHHHHHHHHHHHH-
T ss_pred --hcCccccchhhhh--hHHHHHH-H--------------hCChHH-----------HHHHhHHHhhHHHHHHHHHHHh-
Confidence 0011222221000 0000000 0 001111 1122235689999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHhHHHHH-HHHHHHh--CCCeEEEEecCcchhhccCEEEE-EeCCEEE
Q 000984 538 LKDPRILLLDEATSALDAESEKVVQ-EALDRIM--VNRTTVIVAHRLSTVRNADMIAV-IHRGKIV 599 (1198)
Q Consensus 538 ~~~~~illlDe~ts~lD~~~~~~i~-~~i~~~~--~~~t~i~itH~~~~~~~~d~i~~-l~~G~i~ 599 (1198)
..+|+++||||||+++|+.....+. ..++.+. .++|+|++||..+....+|+.-- +.++++.
T Consensus 750 a~~p~LlLLDEP~~GlD~~~~~~i~~~il~~L~~~~g~tvl~vTH~~el~~l~~~~~~~v~n~~~~ 815 (918)
T 3thx_B 750 ATSQSLVILDELGRGTSTHDGIAIAYATLEYFIRDVKSLTLFVTHYPPVCELEKNYSHQVGNYHMG 815 (918)
T ss_dssp CCTTCEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCCEEEEECSCGGGGGHHHHTTTTEEEEEEE
T ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHhcCCeEEEEeCcHHHHHHHhhcccceEEEEEE
Confidence 7899999999999999999877665 5555543 47999999999988776765431 4455543
|
| >2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.45 E-value=1.1e-14 Score=149.07 Aligned_cols=87 Identities=16% Similarity=0.151 Sum_probs=67.7
Q ss_pred CEEEEEcCCCCCHHHHHHHHhcccCCC---CCeEEECCcccCCCC---hHHHH-hhcc----eeccccccccccHHHHHh
Q 000984 1072 KTVALVGESGSGKSTVVSLLQRFYDPD---AGHITLDGVEIQKLQ---LKWLR-QQMG----LVSQEPVLFNDTIRANIA 1140 (1198)
Q Consensus 1072 ekvaIVG~SGSGKSTL~~lL~R~ydp~---~G~I~IDG~dI~~i~---l~~LR-~~Is----iV~Qdp~LF~gTIreNI~ 1140 (1198)
+++||||+||||||||+++|.|+|+|+ .|.|++||.|+.+++ .+++| ++++ +++|++++| +++
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~i~~~~~~~~d~~r~~~ig~~~~~~~~~~~~~---i~~--- 76 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHGDFEIDKEGKDSWKIYNSGADVVIASPVKLAF---IRR--- 76 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC------------CHHHHHHHHTCEEEEECSSEEEE---EEE---
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCcccccCCccchhHHHHHhcCCceEEECCCcEEE---Eec---
Confidence 689999999999999999999999998 899999999999887 88999 5899 899999998 222
Q ss_pred cCCCCCCCHHHHHHHHHHcchHHHHHh-ccccccceee
Q 000984 1141 YGKGGDATEAEIQAASEMANAHKFICS-LQQVRTSRLL 1177 (1198)
Q Consensus 1141 ~g~~~~~tdeei~~Al~~A~l~dfI~~-LP~g~dt~v~ 1177 (1198)
+ . +++ .|+++++|.. || ||||.|.
T Consensus 77 -~-----~-~~~-----~a~l~~~i~~~l~-g~dt~i~ 101 (171)
T 2f1r_A 77 -V-----S-EEE-----GNDLDWIYERYLS-DYDLVIT 101 (171)
T ss_dssp -C-----C-HHH-----HTCHHHHHHHHTT-TCSEEEE
T ss_pred -C-----C-hhh-----hhCHHHHHHhhCC-CCCEEEE
Confidence 1 1 222 7899999999 99 9999876
|
| >1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A* | Back alignment and structure |
|---|
Probab=99.43 E-value=3.7e-14 Score=178.22 Aligned_cols=166 Identities=14% Similarity=0.154 Sum_probs=109.9
Q ss_pred ccEEEEeEEEEcCCC----CCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCC-CCCeEEECCeecCCcCHH
Q 000984 382 GDIELRDVYFSYPAR----PNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDP-QAGEVLIDGINLKEFQLQ 456 (1198)
Q Consensus 382 g~i~~~~v~~~y~~~----~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~-~~G~i~i~g~~~~~~~~~ 456 (1198)
+.|.+++.. +|-- .++.+++|++|+ ++|++++|+||||||||||++++.|...+ ..|. .+..
T Consensus 576 ~~i~i~~~r--HP~le~~~~~~~vlndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl~~~~q~G~------~vpa---- 642 (800)
T 1wb9_A 576 PGIRITEGR--HPVVEQVLNEPFIANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIALMAYIGS------YVPA---- 642 (800)
T ss_dssp SCEEEEEEC--CTTHHHHCSSCCCCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHHHHHTTTC------CBSS----
T ss_pred CCEEEEecc--ccEEEccCCCceeeeccccc-CCCcEEEEECCCCCChHHHHHHHHHHHHHHhcCc------ccch----
Confidence 347777653 3310 235689999999 99999999999999999999999997432 2231 1111
Q ss_pred HHhcceEEEcCCCCCCc-ccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHH
Q 000984 457 WIRKKIGLVSQEPVLFT-GSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIAR 535 (1198)
Q Consensus 457 ~~r~~i~~v~Q~~~l~~-~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lAR 535 (1198)
-+.++++++| +|. -++.||+..+ . ..+|+|+++. +.+.
T Consensus 643 -~~~~i~~~~~---i~~~~~~~d~l~~~----------------------------~--------stf~~e~~~~-~~il 681 (800)
T 1wb9_A 643 -QKVEIGPIDR---IFTRVGAADDLASG----------------------------R--------STFMVEMTET-ANIL 681 (800)
T ss_dssp -SEEEECCCCE---EEEEEC-----------------------------------------------CHHHHHHH-HHHH
T ss_pred -hcccceeHHH---HHhhCCHHHHHHhh----------------------------h--------hhhhHHHHHH-HHHH
Confidence 1235666665 342 3455554321 1 2356676654 4444
Q ss_pred hhccCCCEEEEeCCCCCCCHHhHHHH-HHHHHHHh--CCCeEEEEecCcchhhccCEEEEEeCCEEEEe
Q 000984 536 AILKDPRILLLDEATSALDAESEKVV-QEALDRIM--VNRTTVIVAHRLSTVRNADMIAVIHRGKIVEK 601 (1198)
Q Consensus 536 al~~~~~illlDe~ts~lD~~~~~~i-~~~i~~~~--~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~ 601 (1198)
....+|+++|||||++++|+.....+ .+.++.+. .++|+|++||..+....||++..+++|++...
T Consensus 682 ~~a~~psLlLLDEp~~Gtd~~d~~~i~~~ll~~l~~~~g~~vl~~TH~~el~~l~d~~~~v~n~~~~~~ 750 (800)
T 1wb9_A 682 HNATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELTQLPEKMEGVANVHLDAL 750 (800)
T ss_dssp HHCCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCGGGGGHHHHSTTEEEEEEEEE
T ss_pred HhccCCCEEEEECCCCCCChhHHHHHHHHHHHHHHhccCCeEEEEeCCHHHHHHhhhhhceEEEEEEEE
Confidence 45789999999999999998765443 55565554 37899999999988877898888888887643
|
| >1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A | Back alignment and structure |
|---|
Probab=99.42 E-value=4.3e-13 Score=149.93 Aligned_cols=151 Identities=17% Similarity=0.216 Sum_probs=98.1
Q ss_pred EEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcceEEEcCCCCCCcccHHHHHh-cCCCC
Q 000984 408 SISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIA-YGKDD 486 (1198)
Q Consensus 408 ~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~Ni~-~~~~~ 486 (1198)
.+++|++++|+||+|||||||++.+++.+. .|.+ +.|.+..+ +..+.|++.+... ..++.++. ++. .
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~~--~g~~-~~g~~~~~------~~~v~~~~~e~~~--~~~~~r~~~~g~-~ 93 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQIA--GGPD-LLEVGELP------TGPVIYLPAEDPP--TAIHHRLHALGA-H 93 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHHH--TCCC-TTCCCCCC------CCCEEEEESSSCH--HHHHHHHHHHHT-T
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHHh--cCCC-cCCCccCC------CccEEEEECCCCH--HHHHHHHHHHHh-h
Confidence 378999999999999999999999998664 4665 33443211 2467787765432 22333322 121 1
Q ss_pred CCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhhccCCCEEEEeCCCC--CCCHHhH---HHH
Q 000984 487 ATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATS--ALDAESE---KVV 561 (1198)
Q Consensus 487 ~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal~~~~~illlDe~ts--~lD~~~~---~~i 561 (1198)
....+....++.. ++....+.....||+||+|++ |+++++|+++|+||||+ ++|.... ..+
T Consensus 94 ~~~~~~~~~~~~l-----------~l~~~~~~~~~~ls~g~~~~i---~~l~~~~~livlDe~~~~~~~d~~~~~~~~~~ 159 (279)
T 1nlf_A 94 LSAEERQAVADGL-----------LIQPLIGSLPNIMAPEWFDGL---KRAAEGRRLMVLDTLRRFHIEEENASGPMAQV 159 (279)
T ss_dssp SCHHHHHHHHHHE-----------EECCCTTSCCCTTSHHHHHHH---HHHHTTCSEEEEECGGGGCCSCTTCHHHHHHH
T ss_pred cChhhhhhccCce-----------EEeecCCCCcccCCHHHHHHH---HHhcCCCCEEEECCHHHhcCCCcCchHHHHHH
Confidence 2232222222221 233334556778999998875 68889999999999999 9998654 566
Q ss_pred HHHHHHHh--CCCeEEEEecCcchh
Q 000984 562 QEALDRIM--VNRTTVIVAHRLSTV 584 (1198)
Q Consensus 562 ~~~i~~~~--~~~t~i~itH~~~~~ 584 (1198)
.+.+..+. .++|+|+++|.....
T Consensus 160 ~~~L~~l~~~~g~tvi~i~H~~~~~ 184 (279)
T 1nlf_A 160 IGRMEAIAADTGCSIVFLHHASKGA 184 (279)
T ss_dssp HHHHHHHHHHHCCEEEEEEEC----
T ss_pred HHHHHHHHHHcCCEEEEEecCCCcc
Confidence 66776663 379999999987654
|
| >1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A* | Back alignment and structure |
|---|
Probab=99.42 E-value=1.2e-14 Score=155.33 Aligned_cols=142 Identities=13% Similarity=0.124 Sum_probs=100.5
Q ss_pred EEeCCCEEEEEcCCCCcHHHHHHHHhccCCC--CCCeEEECCeecCCcCHHHHhcceEEEcCCCCCCcc-cH----HHHH
Q 000984 408 SISSGTTAALVGQSGSGKSTVISLIERFYDP--QAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTG-SI----KDNI 480 (1198)
Q Consensus 408 ~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~--~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~-ti----~~Ni 480 (1198)
..++|++++|+||||||||||+++|+|+++| ..|.|.+.+.+.+. ..+..++|++|++.+|.. ++ .||+
T Consensus 12 ~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~~~~----~e~~gi~y~fq~~~~f~~~~~~~~f~E~~ 87 (219)
T 1s96_A 12 HMAQGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRP----GEVHGEHYFFVNHDEFKEMISRDAFLEHA 87 (219)
T ss_dssp ---CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCT----TCCBTTTBEECCHHHHHHHHHTTCEEEEE
T ss_pred cCCCCcEEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCCCCCc----ccccCceEEECCHHHHHHHHhcCHHHHHH
Confidence 5689999999999999999999999999986 68999888866543 235679999999877754 44 3444
Q ss_pred hcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhhccCCCEEEEeCCCCCCCHHhHHH
Q 000984 481 AYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKV 560 (1198)
Q Consensus 481 ~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal~~~~~illlDe~ts~lD~~~~~~ 560 (1198)
.+....+ |-.+++ ++.++..++++||| ||+.+.+.
T Consensus 88 ~~~~~~y-------------------------------------g~~~~~---v~~~l~~G~illLD-----LD~~~~~~ 122 (219)
T 1s96_A 88 EVFGNYY-------------------------------------GTSREA---IEQVLATGVDVFLD-----IDWQGAQQ 122 (219)
T ss_dssp EETTEEE-------------------------------------EEEHHH---HHHHHTTTCEEEEE-----CCHHHHHH
T ss_pred HHHhccC-------------------------------------CCCHHH---HHHHHhcCCeEEEE-----ECHHHHHH
Confidence 4321100 000111 23334456999999 99999998
Q ss_pred HHHHHHHHhCCCeEEEEecCcchhhccCEEEEEeCCEEEEecChhhHhc
Q 000984 561 VQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVE 609 (1198)
Q Consensus 561 i~~~i~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 609 (1198)
+.+.+. +++|+++++|+++.+.. |+ +.+| .++++++.+
T Consensus 123 i~~~l~---~~~tI~i~th~~~~l~~--Rl--~~rG----~~~~e~i~~ 160 (219)
T 1s96_A 123 IRQKMP---HARSIFILPPSKIELDR--RL--RGRG----QDSEEVIAK 160 (219)
T ss_dssp HHHHCT---TCEEEEEECSSHHHHHH--HH--HTTS----CSCHHHHHH
T ss_pred HHHHcc---CCEEEEEECCCHHHHHH--HH--HHcC----CCCHHHHHH
Confidence 888765 57899999999998765 32 5666 567776643
|
| >1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1 | Back alignment and structure |
|---|
Probab=99.39 E-value=2e-15 Score=171.59 Aligned_cols=153 Identities=20% Similarity=0.174 Sum_probs=108.1
Q ss_pred CEEEEEcCCCCcHHHHHHHHhccC--------CCCCCeEEECCeecCCcC---------------HHHHhcceEEE---c
Q 000984 413 TTAALVGQSGSGKSTVISLIERFY--------DPQAGEVLIDGINLKEFQ---------------LQWIRKKIGLV---S 466 (1198)
Q Consensus 413 ~~~~ivG~~GsGKStl~~~l~g~~--------~~~~G~i~i~g~~~~~~~---------------~~~~r~~i~~v---~ 466 (1198)
++++|+|++|||||||++.|+|.. .|+.|+|.+||.++...+ ..++++.++++ +
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d~G~i~idg~~l~~~~~~~~el~~gCicc~~~~~~~~~l~~l~~~~ 84 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLIGDRATQIKTLTNGCICCSRSNELEDALLDLLDNL 84 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSSCCSCCEEEEEECTTSCEEEEETTSCEEECTTSCHHHHHHHHHHHH
T ss_pred cEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEecCcccCccHHHHhCCCCCEEEECCCceEEcccHHHHHHHHHHHhHH
Confidence 589999999999999999999997 789999999999987653 34677789988 7
Q ss_pred CCCCC-CcccHHHHHhcCCCCCCHHHHHHHH-HHhcHHHHHHhCCCCccchhcC-----CCCCCChHHHHHHhHHHhhcc
Q 000984 467 QEPVL-FTGSIKDNIAYGKDDATTEEIRVAT-ELANAAKFIDKLPQGIDTLVGE-----HGTQLSGGQKQRIAIARAILK 539 (1198)
Q Consensus 467 Q~~~l-~~~ti~~Ni~~~~~~~~~~~~~~~~-~~~~~~~~i~~l~~g~~t~v~~-----~g~~lSgGqkqri~lARal~~ 539 (1198)
|++.+ +..++.||..++.| ..+.... ......+ -..+ ++.-+.++- .-.++|+|||||...+++++.
T Consensus 85 q~~~~~~~~~v~E~~~l~~p----~~~~~~~~~~~~~~~-~~~l-~~~l~~vd~~~~~~~~~~ls~g~~Q~~~ad~ill~ 158 (318)
T 1nij_A 85 DKGNIQFDRLVIECTGMADP----GPIIQTFFSHEVLCQ-RYLL-DGVIALVDAVHADEQMNQFTIAQSQVGYADRILLT 158 (318)
T ss_dssp HHTSCCCSEEEEEEETTCCH----HHHHHHHHHSHHHHH-HEEE-EEEEEEEETTTHHHHHHHCHHHHHHHHTCSEEEEE
T ss_pred hcCCCCCCEEEEeCCCCCCH----HHHHHHHhcCccccC-eEEE-CCEEEEEEHHHHHHHHhhchHHHHHHHhCCEEEEE
Confidence 88764 68899999987643 2221111 0000000 0001 011122211 012589999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHhHHHHHHHHHHHhCCCeEEEEecCcc
Q 000984 540 DPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLS 582 (1198)
Q Consensus 540 ~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~ 582 (1198)
+|+++ ||| +.+.+.++++..+.|+++++|+..
T Consensus 159 k~dl~--de~---------~~l~~~l~~l~~~~~ii~~sh~~~ 190 (318)
T 1nij_A 159 KTDVA--GEA---------EKLHERLARINARAPVYTVTHGDI 190 (318)
T ss_dssp CTTTC--SCT---------HHHHHHHHHHCSSSCEEECCSSCC
T ss_pred CcccC--CHH---------HHHHHHHHHhCCCCeEEEecccCC
Confidence 99987 888 566677777667889999999743
|
| >2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A | Back alignment and structure |
|---|
Probab=99.38 E-value=2.4e-15 Score=171.36 Aligned_cols=149 Identities=14% Similarity=0.122 Sum_probs=102.3
Q ss_pred CcCHHHHHHHHHHHHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHhcCCCCCCCCCCCCC-cccCCcccEE---------
Q 000984 976 KATFSDVFKVFFSLTMTAIGISQSSS-FSSDSNKAKSAAASIFAIIDRESKIDPSDESGT-ILEDVKGEIE--------- 1044 (1198)
Q Consensus 976 ~~t~g~l~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~-~~~~~~G~I~--------- 1044 (1198)
.++.+.+..+..++.....+ .+.. ..+.++....+.+|+..+++.|... ...... ......+.++
T Consensus 75 ~lt~~~l~~~~~~~~~~~~~--~l~~~~~~~~~~~~~~~~Ri~~~l~~p~~~--~~~~~~~ir~~~~~~i~l~~l~~~g~ 150 (330)
T 2pt7_A 75 AFSLSRLMHFARCCASFKKK--TIDNYENPILSSNLANGERVQIVLSPVTVN--DETISISIRIPSKTTYPHSFFEEQGF 150 (330)
T ss_dssp GGSHHHHHHHHHHHHHHTTC--CCCSSSCCEEEEECTTSCEEEEECTTTSSS--TTCCEEEEECCCCCCCCHHHHHHTTT
T ss_pred CCCHHHHHHHHHHHHHHhCC--CCCCCCCeeEEEEcCCCcEEEEEEcCCccC--CCCceEEEeCCCCCCCCHHHHHhCCC
Confidence 57888888887776654443 2222 2233333334456777766533211 110000 0011234567
Q ss_pred EeeeeEECCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHhhccee
Q 000984 1045 LHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMGLV 1124 (1198)
Q Consensus 1045 f~nVsf~Y~~~~~~~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~~i~l~~LR~~IsiV 1124 (1198)
|+||+| | .++++++||.|++|+.++|+||||||||||+++|.|+++|++|.|.|+|.+ ++.+..+|++++++
T Consensus 151 ~~~v~f-y-----~~~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~--e~~~~~~~~~i~~~ 222 (330)
T 2pt7_A 151 YNLLDN-K-----EQAISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTE--EIVFKHHKNYTQLF 222 (330)
T ss_dssp TTTSTT-H-----HHHHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSC--CCCCSSCSSEEEEE
T ss_pred cCchhh-H-----HHHHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCee--ccccccchhEEEEE
Confidence 889999 8 259999999999999999999999999999999999999999999999986 45555578889988
Q ss_pred ccccccccccHHHHHh
Q 000984 1125 SQEPVLFNDTIRANIA 1140 (1198)
Q Consensus 1125 ~Qdp~LF~gTIreNI~ 1140 (1198)
+|. .-+.|.+|+
T Consensus 223 ~gg----g~~~r~~la 234 (330)
T 2pt7_A 223 FGG----NITSADCLK 234 (330)
T ss_dssp CBT----TBCHHHHHH
T ss_pred eCC----ChhHHHHHH
Confidence 761 126666765
|
| >3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP} | Back alignment and structure |
|---|
Probab=99.38 E-value=2e-15 Score=161.09 Aligned_cols=118 Identities=15% Similarity=0.186 Sum_probs=87.1
Q ss_pred EeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcceEEEcCCCCCCcccHHHHHhcC-CCCC
Q 000984 409 ISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYG-KDDA 487 (1198)
Q Consensus 409 i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~Ni~~~-~~~~ 487 (1198)
.++|++++|+||||||||||+++|.|+++|. | ..+++|+|+...++.+.++|+... ....
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~-g------------------~~~g~v~~d~~~~~~~~~~~~~~~~~~~~ 79 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQ-G------------------LPAEVVPMDGFHLDNRLLEPRGLLPRKGA 79 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHHHT-T------------------CCEEEEESGGGBCCHHHHGGGTCGGGTTS
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhhc-C------------------CceEEEecCCCcCCHHHHHHhcccccCCC
Confidence 4689999999999999999999999999876 4 157888888888888877776311 0000
Q ss_pred CHHHHHHHHHHhcHHHHHHhCCCC--ccchhcCCCCCCChHHHHHHhHH-HhhccCCCEEEEeCCC
Q 000984 488 TTEEIRVATELANAAKFIDKLPQG--IDTLVGEHGTQLSGGQKQRIAIA-RAILKDPRILLLDEAT 550 (1198)
Q Consensus 488 ~~~~~~~~~~~~~~~~~i~~l~~g--~~t~v~~~g~~lSgGqkqri~lA-Ral~~~~~illlDe~t 550 (1198)
..+.+...+.+.+..++.| +++.+.+++..+|+||+||+++| |+++.++.++++|||.
T Consensus 80 -----~~~~~~~~~~~~l~~l~~~~~i~~p~~d~~~~~~~g~~~~v~~~~~~~i~eg~~~l~de~~ 140 (208)
T 3c8u_A 80 -----PETFDFEGFQRLCHALKHQERVIYPLFDRARDIAIAGAAEVGPECRVAIIEGNYLLFDAPG 140 (208)
T ss_dssp -----GGGBCHHHHHHHHHHHHHCSCEEEEEEETTTTEEEEEEEEECTTCCEEEEEESSTTBCSTT
T ss_pred -----CchhhHHHHHHHHHHHhcCCceecccCCccccCCCCCceEEcCCCcEEEECCceeccCCch
Confidence 0001111222334444444 67788999999999999999998 9999999888899984
|
| >1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A | Back alignment and structure |
|---|
Probab=99.38 E-value=8.7e-15 Score=147.79 Aligned_cols=90 Identities=14% Similarity=0.107 Sum_probs=75.3
Q ss_pred EEeeeeEECCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHhhcce
Q 000984 1044 ELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMGL 1123 (1198)
Q Consensus 1044 ~f~nVsf~Y~~~~~~~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~~i~l~~LR~~Isi 1123 (1198)
+-+|++++|. +..+++++||+|++|+.+||+||+|||||||+++|.|+. |++|+|.++|.++.+. ...+ .+
T Consensus 9 ~~~~~~~~~g---~~~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~~~G~V~~~g~~i~~~--~~~~---~~ 79 (158)
T 1htw_A 9 PDEFSMLRFG---KKFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI-GHQGNVKSPTYTLVEE--YNIA---GK 79 (158)
T ss_dssp CSHHHHHHHH---HHHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT-TCCSCCCCCTTTCEEE--EEET---TE
T ss_pred CCHHHHHHHH---HHHHHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC-CCCCeEEECCEeeeee--ccCC---Cc
Confidence 3456677774 236999999999999999999999999999999999999 9999999999998531 1122 28
Q ss_pred eccccccccccHHHHHh-cC
Q 000984 1124 VSQEPVLFNDTIRANIA-YG 1142 (1198)
Q Consensus 1124 V~Qdp~LF~gTIreNI~-~g 1142 (1198)
|+|++.+|.-|+.||+. +|
T Consensus 80 ~~q~~~l~~ltv~e~l~~~g 99 (158)
T 1htw_A 80 MIYHFDLYRLADPEELEFMG 99 (158)
T ss_dssp EEEEEECTTCSCTTHHHHST
T ss_pred ceeccccccCCcHHHHHHcC
Confidence 99999999889999995 45
|
| >2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.37 E-value=4.4e-14 Score=163.64 Aligned_cols=177 Identities=14% Similarity=0.132 Sum_probs=110.5
Q ss_pred EEEEeEEEEcCCCCCCccccceeEEEeCCCE--EEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcc
Q 000984 384 IELRDVYFSYPARPNEQIFSGFSISISSGTT--AALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKK 461 (1198)
Q Consensus 384 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~--~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~ 461 (1198)
+++++ ++.|++ .+ |+++||++++|+. ++|+||||||||||+++|+|+. ++|.++........+..
T Consensus 17 l~~~~-~~~y~~---~~-L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~--------l~g~~~~~~~~~~~~~~ 83 (427)
T 2qag_B 17 VPLAG-HVGFDS---LP-DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTK--------FEGEPATHTQPGVQLQS 83 (427)
T ss_dssp CCCCC-CC-CC-----C-HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSC--------C-------CCSSCEEEE
T ss_pred EEEee-EEEECC---ee-cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCcc--------ccCCcCCCCCccceEee
Confidence 55566 778853 34 9999999999999 9999999999999999999983 34444443333334568
Q ss_pred eEEEcCCCCCC-cccHHHHHhcCCCCCCHHHHHHH----HHHhcHHHHHHhC-------CCCccch-------hcCCCCC
Q 000984 462 IGLVSQEPVLF-TGSIKDNIAYGKDDATTEEIRVA----TELANAAKFIDKL-------PQGIDTL-------VGEHGTQ 522 (1198)
Q Consensus 462 i~~v~Q~~~l~-~~ti~~Ni~~~~~~~~~~~~~~~----~~~~~~~~~i~~l-------~~g~~t~-------v~~~g~~ 522 (1198)
++|++|++.++ ..|+.||+.+|.. .+.+..|.. .+ ....+.+... +..-++. +-+.+..
T Consensus 84 i~~v~Q~~~l~~~ltv~D~~~~g~~-~~~~~~~~~i~~~i~-~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~ 161 (427)
T 2qag_B 84 NTYDLQESNVRLKLTIVSTVGFGDQ-INKEDSYKPIVEFID-AQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHS 161 (427)
T ss_dssp EEEEEEC--CEEEEEEEEEECCCC--CCHHHHSHHHHHHHH-HHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC--
T ss_pred EEEEeecCccccccchhhhhhhhhc-cccchhhhHHHHHHH-HHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCC
Confidence 99999999887 5799999998764 332221111 11 1112222222 1112222 2334456
Q ss_pred CChHHHHHHhHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHH-Hh-CCCeEEEEe
Q 000984 523 LSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDR-IM-VNRTTVIVA 578 (1198)
Q Consensus 523 lSgGqkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~-~~-~~~t~i~it 578 (1198)
|+-.+ +.++++|..+++|+++|+|+..|.+.....+.+.|++ +. .+..++.++
T Consensus 162 l~~~D---ieilk~L~~~~~vI~Vi~KtD~Lt~~E~~~l~~~I~~~L~~~gi~I~~is 216 (427)
T 2qag_B 162 LKSLD---LVTMKKLDSKVNIIPIIAKADAISKSELTKFKIKITSELVSNGVQIYQFP 216 (427)
T ss_dssp -CHHH---HHHHHHTCSCSEEEEEESCGGGSCHHHHHHHHHHHHHHHBTTBCCCCCCC
T ss_pred CCHHH---HHHHHHHhhCCCEEEEEcchhccchHHHHHHHHHHHHHHHHcCCcEEecC
Confidence 77666 7899999999999999999999988766667777775 32 345665555
|
| >2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A* | Back alignment and structure |
|---|
Probab=99.37 E-value=1.2e-12 Score=140.53 Aligned_cols=151 Identities=15% Similarity=0.128 Sum_probs=95.1
Q ss_pred ccccceeE-EEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcceEEEcCCCCCCcccHHH
Q 000984 400 QIFSGFSI-SISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKD 478 (1198)
Q Consensus 400 ~~l~~i~l-~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~ 478 (1198)
+.|+.+.. -+++|++++|+||+|||||||++.+++ .+..+ +.|+..+..+-...+++
T Consensus 7 ~~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~--~~~~~--------------------v~~i~~~~~~~~~~~~~ 64 (220)
T 2cvh_A 7 KSLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL--LSGKK--------------------VAYVDTEGGFSPERLVQ 64 (220)
T ss_dssp HHHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH--HHCSE--------------------EEEEESSCCCCHHHHHH
T ss_pred HHHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH--HcCCc--------------------EEEEECCCCCCHHHHHH
Confidence 45666655 689999999999999999999999999 32222 33333333211122222
Q ss_pred HHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChH--HHHHHhHHHhhccC-CCEEEEeCCCCCCCH
Q 000984 479 NIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGG--QKQRIAIARAILKD-PRILLLDEATSALDA 555 (1198)
Q Consensus 479 Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgG--qkqri~lARal~~~-~~illlDe~ts~lD~ 555 (1198)
.... ...+.++ ....+ .+. ..+++ |+|+++.+|+++++ |+++++||||+.+|+
T Consensus 65 ~~~~--~~~~~~~------------~~~~~------~~~----~~~~~~~~~~~~~~~~~l~~~~~~lliiD~~~~~l~~ 120 (220)
T 2cvh_A 65 MAET--RGLNPEE------------ALSRF------ILF----TPSDFKEQRRVIGSLKKTVDSNFALVVVDSITAHYRA 120 (220)
T ss_dssp HHHT--TTCCHHH------------HHHHE------EEE----CCTTTSHHHHHHHHHHHHCCTTEEEEEEECCCCCTTG
T ss_pred HHHh--cCCChHH------------HhhcE------EEE----ecCCHHHHHHHHHHHHHHhhcCCCEEEEcCcHHHhhh
Confidence 2211 0111111 11111 111 23344 47899999999986 999999999999997
Q ss_pred HhH-----H---HHHHHHHHHhC--CCeEEEEecCcc-------------hhh-ccCEEEEEeCC
Q 000984 556 ESE-----K---VVQEALDRIMV--NRTTVIVAHRLS-------------TVR-NADMIAVIHRG 596 (1198)
Q Consensus 556 ~~~-----~---~i~~~i~~~~~--~~t~i~itH~~~-------------~~~-~~d~i~~l~~G 596 (1198)
... + .+.+.++++.+ ++|+|+++|... .+. .||+|++|++.
T Consensus 121 ~~~~~~~~~~~~~~~~~L~~l~~~~~~~vi~~~h~~~~~~~~~~~p~~~~~~~~~~d~vi~l~~~ 185 (220)
T 2cvh_A 121 EENRSGLIAELSRQLQVLLWIARKHNIPVIVINQVHFDSRTEMTKPVAEQTLGYRCKDILRLDKL 185 (220)
T ss_dssp GGGSSTTHHHHHHHHHHHHHHHHHHTCCEEEEECSSSSCTTSSCCSCCCHHHHHTSSEEEEEEEC
T ss_pred cCchHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeEEEcCCCCccccCCCcceeecCcEEEEEEEe
Confidence 532 2 34444555543 789999999865 333 59999999754
|
| >1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.36 E-value=8.1e-14 Score=149.52 Aligned_cols=93 Identities=18% Similarity=0.218 Sum_probs=63.3
Q ss_pred cccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCCh-HHHHhhcceecccccccc-----
Q 000984 1059 QVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQL-KWLRQQMGLVSQEPVLFN----- 1132 (1198)
Q Consensus 1059 ~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~~i~l-~~LR~~IsiV~Qdp~LF~----- 1132 (1198)
..|+||||+|++|+.+|||||||||||||+++|.|++ | |+|.+ |+++.+.+. ...|+.+++++|++.+|.
T Consensus 11 ~~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~-p--G~i~~-g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 86 (218)
T 1z6g_A 11 SSGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF-P--NYFYF-SVSCTTRKKREKEKEGVDYYFIDKTIFEDKLKN 86 (218)
T ss_dssp -----------CCCCEEEECSTTSSHHHHHHHHHHHS-T--TTEEE-CCCEECSCCCSSCCBTTTBEECCHHHHHHHHHT
T ss_pred ccccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC-C--CcEEE-eecccCCCCCcccccCCeEEECCHHHHHHhhhc
Confidence 3699999999999999999999999999999999999 6 99999 988865432 346789999999986653
Q ss_pred ------ccHHHHHhcCCCCCCCHHHHHHHHHHcc
Q 000984 1133 ------DTIRANIAYGKGGDATEAEIQAASEMAN 1160 (1198)
Q Consensus 1133 ------gTIreNI~~g~~~~~tdeei~~Al~~A~ 1160 (1198)
+++++| .||. .++++.++++...
T Consensus 87 ~~~l~~~~~~~~-~~g~----~~~~i~~~l~~~~ 115 (218)
T 1z6g_A 87 EDFLEYDNYANN-FYGT----LKSEYDKAKEQNK 115 (218)
T ss_dssp TCEEEEEEETTE-EEEE----EHHHHHHHHHTTC
T ss_pred cchhhhhhcccc-cCCC----cHHHHHHHHhCCC
Confidence 455566 4542 3456666666543
|
| >2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.35 E-value=7.7e-14 Score=153.39 Aligned_cols=104 Identities=21% Similarity=0.313 Sum_probs=84.7
Q ss_pred EEEeeeeEECCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCC-CCeEEECCcccCCCChHHHHhhc
Q 000984 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPD-AGHITLDGVEIQKLQLKWLRQQM 1121 (1198)
Q Consensus 1043 I~f~nVsf~Y~~~~~~~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~-~G~I~IDG~dI~~i~l~~LR~~I 1121 (1198)
++++|++|. ++|+|+| +++|+.++|+|||||||||++++|.|+++|+ +|+|.++|.|+..+. ++.+
T Consensus 6 ~~l~~l~~~-------~vl~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i~~~~----~~~~ 72 (261)
T 2eyu_A 6 PEFKKLGLP-------DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVF----KHKK 72 (261)
T ss_dssp CCGGGSSCC-------THHHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESSCCSCC----CCSS
T ss_pred CChHHCCCH-------HHHHHHh--hCCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCcceeec----CCcc
Confidence 467787752 3899999 9999999999999999999999999999998 999999999987653 4567
Q ss_pred ceecc-----ccccccccHHHHHhcCCC----CCC-CHHHHHHHHHHc
Q 000984 1122 GLVSQ-----EPVLFNDTIRANIAYGKG----GDA-TEAEIQAASEMA 1159 (1198)
Q Consensus 1122 siV~Q-----dp~LF~gTIreNI~~g~~----~~~-tdeei~~Al~~A 1159 (1198)
++|+| ++..|..+|+.+|+.++. ++. +.+.++++++.+
T Consensus 73 ~~v~q~~~gl~~~~l~~~la~aL~~~p~illlDEp~D~~~~~~~l~~~ 120 (261)
T 2eyu_A 73 SIVNQREVGEDTKSFADALRAALREDPDVIFVGEMRDLETVETALRAA 120 (261)
T ss_dssp SEEEEEEBTTTBSCHHHHHHHHHHHCCSEEEESCCCSHHHHHHHHHHH
T ss_pred eeeeHHHhCCCHHHHHHHHHHHHhhCCCEEEeCCCCCHHHHHHHHHHH
Confidence 88999 777889999999998631 122 566666666654
|
| >1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=99.34 E-value=5.5e-14 Score=148.50 Aligned_cols=82 Identities=23% Similarity=0.420 Sum_probs=71.6
Q ss_pred eeCCCEEEEEcCCCCCHHHHHHHHhcccC-------------CCCCeEEECCcccCCCChHHHHhhcceecccccccccc
Q 000984 1068 IRAGKTVALVGESGSGKSTVVSLLQRFYD-------------PDAGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDT 1134 (1198)
Q Consensus 1068 I~~GekvaIVG~SGSGKSTL~~lL~R~yd-------------p~~G~I~IDG~dI~~i~l~~LR~~IsiV~Qdp~LF~gT 1134 (1198)
+++|++++||||||||||||+++|.|+|+ |..|. +||+|+..++.+.+|+.+ +|++++|.+|
T Consensus 1 m~~g~~i~lvGpsGaGKSTLl~~L~~~~~~~~~~~v~~ttr~~~~g~--~~g~~~~~~~~~~~~~~i---~~~~~l~~~~ 75 (198)
T 1lvg_A 1 MAGPRPVVLSGPSGAGKSTLLKKLFQEHSSIFGFSVSHTTRNPRPGE--EDGKDYYFVTREMMQRDI---AAGDFIEHAE 75 (198)
T ss_dssp ----CCEEEECCTTSSHHHHHHHHHHHHTTTEEECCCEECSCCCTTC--CBTTTBEECCHHHHHHHH---HHTCEEEEEE
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHhhCchhceeeeeeeccCCCCcc--cCCceEEEccHHHHHHHH---HcCCCEeeee
Confidence 46899999999999999999999999997 78897 699999999999999986 7999999999
Q ss_pred HHHHHhcCCCCCCCHHHHHHHHHHc
Q 000984 1135 IRANIAYGKGGDATEAEIQAASEMA 1159 (1198)
Q Consensus 1135 IreNI~~g~~~~~tdeei~~Al~~A 1159 (1198)
+++|+ || .++++++++++.+
T Consensus 76 ~~~n~-~g----~~~~~i~~~~~~~ 95 (198)
T 1lvg_A 76 FSGNL-YG----TSKEAVRAVQAMN 95 (198)
T ss_dssp ETTEE-EE----EEHHHHHHHHHTT
T ss_pred ecCcc-CC----CCHHHHHHHHHcC
Confidence 99998 76 3688999999864
|
| >1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=99.34 E-value=2.2e-14 Score=150.77 Aligned_cols=136 Identities=15% Similarity=0.092 Sum_probs=86.5
Q ss_pred EEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcceEEEcCCCCCCcccHHHHHhcCCCCC
Q 000984 408 SISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDA 487 (1198)
Q Consensus 408 ~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~Ni~~~~~~~ 487 (1198)
.+++|++++|+||+|||||||++.|.|. |..|.|.++|.++..... .++.++|++|++. .+.|+.+|+.+..
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~--~~~g~i~i~~d~~~~~~~--~~~~~~~~~~~~~-~~~~v~~~l~~~~--- 76 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIAEALANL--PGVPKVHFHSDDLWGYIK--HGRIDPWLPQSHQ-QNRMIMQIAADVA--- 76 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHHHHHHTC--SSSCEEEECTTHHHHTCC--SSCCCTTSSSHHH-HHHHHHHHHHHHH---
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHhc--cCCCeEEEcccchhhhhh--cccccCCccchhh-hhHHHHHHHHHHH---
Confidence 4779999999999999999999999998 678999999876532211 1234678888664 4568888886421
Q ss_pred CHHHHHHHHHHhcHHHHHHhCC--CCccchh--cCCCCCCChHHHHHHhHHHhhccCCCEEEEeCCCCCCCHHhHHHHHH
Q 000984 488 TTEEIRVATELANAAKFIDKLP--QGIDTLV--GEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQE 563 (1198)
Q Consensus 488 ~~~~~~~~~~~~~~~~~i~~l~--~g~~t~v--~~~g~~lSgGqkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~ 563 (1198)
..+ .. .+....++.+. .+++... +.....+|+||+||+++||++.++|+++ +|++..+.+.+
T Consensus 77 --~~~---~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~ls~~~~~~v~~~R~~~r~~~~l--------ld~~~~~~~~~ 142 (191)
T 1zp6_A 77 --GRY---AK-EGYFVILDGVVRPDWLPAFTALARPLHYIVLRTTAAEAIERCLDRGGDSL--------SDPLVVADLHS 142 (191)
T ss_dssp --HHH---HH-TSCEEEECSCCCTTTTHHHHTTCSCEEEEEEECCHHHHHHHHHTTCTTSC--------CCHHHHHHHHH
T ss_pred --HHH---hc-cCCeEEEeccCcHHHHHHHHhcCCCeEEEEecCCHHHHHHHHHhcCCCcc--------CCHHHHHHHHH
Confidence 000 00 00000000000 0111111 3334579999999999999999999876 57765555544
Q ss_pred HH
Q 000984 564 AL 565 (1198)
Q Consensus 564 ~i 565 (1198)
.+
T Consensus 143 ~~ 144 (191)
T 1zp6_A 143 QF 144 (191)
T ss_dssp HT
T ss_pred HH
Confidence 44
|
| >1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1 | Back alignment and structure |
|---|
Probab=99.33 E-value=5.6e-14 Score=163.29 Aligned_cols=122 Identities=23% Similarity=0.311 Sum_probs=102.0
Q ss_pred ccccceEEeeC--CCEEEEEcCCCCCHHHHHHHHhcccCCCC----CeEEE----CCcccCCCChHHHHhhcceeccccc
Q 000984 1060 VFRDLNLKIRA--GKTVALVGESGSGKSTVVSLLQRFYDPDA----GHITL----DGVEIQKLQLKWLRQQMGLVSQEPV 1129 (1198)
Q Consensus 1060 vL~~is~~I~~--GekvaIVG~SGSGKSTL~~lL~R~ydp~~----G~I~I----DG~dI~~i~l~~LR~~IsiV~Qdp~ 1129 (1198)
+.+.|+++|++ |+++||||+||||||||+++|.|+|+|++ |+|++ +|.++ .++..++ ++|++++|++.
T Consensus 157 ~~~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~~~~~e~G~i~i~~~~~~~~~-~~~~~~~-~~I~~~~q~~~ 234 (365)
T 1lw7_A 157 YWKFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFNTTSAWEYGREFVFEKLGGDEQ-AMQYSDY-PQMALGHQRYI 234 (365)
T ss_dssp GGGGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTTCEEECCTTHHHHHHSSSSCTT-SSCTTTH-HHHHHHHHHHH
T ss_pred ChhhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhCCCcchhhHHHHHHhhcCCCcc-cCChhHH-HHHHHHHHHHH
Confidence 46789999999 99999999999999999999999999999 99997 47777 6677777 66999999999
Q ss_pred cccccHHHHHhcCCCCCCCHHHHHHHHHHcchHHHHHhccccccceeeeee---cccc
Q 000984 1130 LFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQVRTSRLLLVM---IPWL 1184 (1198)
Q Consensus 1130 LF~gTIreNI~~g~~~~~tdeei~~Al~~A~l~dfI~~LP~g~dt~v~~~~---~~~~ 1184 (1198)
+|++|+++||.++.. +..+..++......+...++..++.+++..+.+.- .||.
T Consensus 235 ~~~~t~~~nl~~~~~-~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~lllLdE~~~p~~ 291 (365)
T 1lw7_A 235 DYAVRHSHKIAFIDT-DFITTQAFCIQYEGKAHPFLDSMIKEYPFDVTILLKNNTEWV 291 (365)
T ss_dssp HHHHHHCSSEEEESS-CHHHHHHHHHHHHSCCCHHHHHHHHHSCCSEEEEEECCCC--
T ss_pred HHHHhccCCEEEEeC-CchHHHHHHHHHcCCCCHHHHHHHhhcCCCEEEECCCCCCcc
Confidence 999999999998743 45567777777777889999999988777764433 3885
|
| >3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A* | Back alignment and structure |
|---|
Probab=99.31 E-value=5.8e-14 Score=158.30 Aligned_cols=81 Identities=21% Similarity=0.268 Sum_probs=72.3
Q ss_pred CcccEEEeeeeEECCCCCCccccccceEE-----------------------eeCCCEEEEEcCCCCCHHHHHHHHhccc
Q 000984 1039 VKGEIELHHVSFKYPSRPDVQVFRDLNLK-----------------------IRAGKTVALVGESGSGKSTVVSLLQRFY 1095 (1198)
Q Consensus 1039 ~~G~I~f~nVsf~Y~~~~~~~vL~~is~~-----------------------I~~GekvaIVG~SGSGKSTL~~lL~R~y 1095 (1198)
.++.|+++||++.|. |+++++++. +++|+.+||+|+||||||||+++|.+++
T Consensus 40 ~~~~i~~~~v~~~y~-----p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~ivgI~G~sGsGKSTL~~~L~gll 114 (312)
T 3aez_A 40 LGEQIDLLEVEEVYL-----PLARLIHLQVAARQRLFAATAEFLGEPQQNPDRPVPFIIGVAGSVAVGKSTTARVLQALL 114 (312)
T ss_dssp TTCCCCHHHHHHTHH-----HHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSSSCCCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCeEEeeehhhhhh-----hHHHHHHHHHhhhhHHHHHHHHhhcccccccCCCCCEEEEEECCCCchHHHHHHHHHhhc
Confidence 456799999999993 478887775 8999999999999999999999999999
Q ss_pred CCCCCeEEECCcccCCCChHHHHhhcceeccccccccccHHHHHhc
Q 000984 1096 DPDAGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIAY 1141 (1198)
Q Consensus 1096 dp~~G~I~IDG~dI~~i~l~~LR~~IsiV~Qdp~LF~gTIreNI~~ 1141 (1198)
+|..|. +++++|+||+++|..|+++|+.+
T Consensus 115 ~~~~G~-----------------~~v~~v~qd~~~~~~t~~e~~~~ 143 (312)
T 3aez_A 115 ARWDHH-----------------PRVDLVTTDGFLYPNAELQRRNL 143 (312)
T ss_dssp HTSTTC-----------------CCEEEEEGGGGBCCHHHHHHTTC
T ss_pred cccCCC-----------------CeEEEEecCccCCcccHHHHHHH
Confidence 998663 57899999999999999999975
|
| >2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A* | Back alignment and structure |
|---|
Probab=99.30 E-value=3.4e-13 Score=156.13 Aligned_cols=95 Identities=22% Similarity=0.314 Sum_probs=81.5
Q ss_pred cccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCC-CCeEEECCcccCCCChHHHHhhcceecc-----cccccc
Q 000984 1059 QVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPD-AGHITLDGVEIQKLQLKWLRQQMGLVSQ-----EPVLFN 1132 (1198)
Q Consensus 1059 ~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~-~G~I~IDG~dI~~i~l~~LR~~IsiV~Q-----dp~LF~ 1132 (1198)
++|++++ +++|+.++|||||||||||++++|.|+++|+ +|+|.++|.++. + .+|+++++|+| ++..|+
T Consensus 126 ~~l~~l~--~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e-~---~~~~~~~~v~Q~~~g~~~~~~~ 199 (372)
T 2ewv_A 126 DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIE-Y---VFKHKKSIVNQREVGEDTKSFA 199 (372)
T ss_dssp SSHHHHT--TSSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCC-S---CCCCSSSEEEEEEBTTTBSCSH
T ss_pred HHHHHHh--hcCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHh-h---hhccCceEEEeeecCCCHHHHH
Confidence 3678776 8999999999999999999999999999998 899988877764 2 36789999999 999999
Q ss_pred ccHHHHHhcCCCCCC-------CHHHHHHHHHHcch
Q 000984 1133 DTIRANIAYGKGGDA-------TEAEIQAASEMANA 1161 (1198)
Q Consensus 1133 gTIreNI~~g~~~~~-------tdeei~~Al~~A~l 1161 (1198)
++|++||++++ +. ++++++.|++.++.
T Consensus 200 ~~l~~~L~~~p--d~illdE~~d~e~~~~~l~~~~~ 233 (372)
T 2ewv_A 200 DALRAALREDP--DVIFVGEMRDLETVETALRAAET 233 (372)
T ss_dssp HHHHHHTTSCC--SEEEESCCCSHHHHHHHHHHHTT
T ss_pred HHHHHHhhhCc--CEEEECCCCCHHHHHHHHHHHhc
Confidence 99999999863 44 67778888887764
|
| >1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=99.27 E-value=3.9e-12 Score=138.95 Aligned_cols=146 Identities=19% Similarity=0.297 Sum_probs=87.5
Q ss_pred EEeCCCEEEEEcCCCCcHHHHHHHHhc--cCCC-----CCCeEEECCeecCC-cCHHHHhcceEEEcCCCCCCcccHHHH
Q 000984 408 SISSGTTAALVGQSGSGKSTVISLIER--FYDP-----QAGEVLIDGINLKE-FQLQWIRKKIGLVSQEPVLFTGSIKDN 479 (1198)
Q Consensus 408 ~i~~g~~~~ivG~~GsGKStl~~~l~g--~~~~-----~~G~i~i~g~~~~~-~~~~~~r~~i~~v~Q~~~l~~~ti~~N 479 (1198)
-+++|++++|+||+|||||||++.|++ ..+| ..|.+++++.+... -....+++++++.+|+ +.+|
T Consensus 20 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~-------~~~~ 92 (243)
T 1n0w_A 20 GIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGSD-------VLDN 92 (243)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHH-------HHHT
T ss_pred CCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHHHHHHHcCCCHHH-------HhhC
Confidence 488999999999999999999999999 4554 56788888765211 1123334455655543 4555
Q ss_pred HhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhhc--cCCCEEEEeCCCCCCCHH-
Q 000984 480 IAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAIL--KDPRILLLDEATSALDAE- 556 (1198)
Q Consensus 480 i~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal~--~~~~illlDe~ts~lD~~- 556 (1198)
+.+..+ .+.++.... +.-+++++ .+|+++++|||++.+|+.
T Consensus 93 ~~~~~~-~~~~~~~~~-----------------------------------~~~~~~~~~~~~~~lliiD~~~~~~~~~~ 136 (243)
T 1n0w_A 93 VAYARA-FNTDHQTQL-----------------------------------LYQASAMMVESRYALLIVDSATALYRTDY 136 (243)
T ss_dssp EEEEEC-CSHHHHHHH-----------------------------------HHHHHHHHHHSCEEEEEEETSSGGGC---
T ss_pred eEEEec-CCHHHHHHH-----------------------------------HHHHHHHHhcCCceEEEEeCchHHHHHHh
Confidence 544322 222222211 11111111 689999999999999985
Q ss_pred ------hHH-----HHHHHHHHHh--CCCeEEEEecCcchh-------------------h-ccCEEEEEeCC
Q 000984 557 ------SEK-----VVQEALDRIM--VNRTTVIVAHRLSTV-------------------R-NADMIAVIHRG 596 (1198)
Q Consensus 557 ------~~~-----~i~~~i~~~~--~~~t~i~itH~~~~~-------------------~-~~d~i~~l~~G 596 (1198)
.++ .+.+.+..+. .++|+|+++|..... . .||.+++|++|
T Consensus 137 ~~~~~~~~r~~~~~~~~~~l~~~~~~~~~tvi~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~d~vi~l~~~ 209 (243)
T 1n0w_A 137 SGRGELSARQMHLARFLRMLLRLADEFGVAVVITNQVVAQVDGAAMFAADPKKPIGGNIIAHASTTRLYLRKG 209 (243)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHHCCEEEEEC-------------------------CCTTCEEEEEEEC
T ss_pred cCCccHHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeeeecCCCccccCCCcccCCccChhhhcCcEEEEEEEc
Confidence 322 2333344332 378999999965432 2 48999999865
|
| >2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.26 E-value=3.7e-13 Score=158.54 Aligned_cols=98 Identities=17% Similarity=0.256 Sum_probs=84.6
Q ss_pred ccEEEeeeeEECCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCc---ccCCCC----
Q 000984 1041 GEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGV---EIQKLQ---- 1113 (1198)
Q Consensus 1041 G~I~f~nVsf~Y~~~~~~~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~---dI~~i~---- 1113 (1198)
+.++++||++.|+. +..||+++ |+|++||++||+|+||||||||+++|.|+++|++|.|.++|. +++++.
T Consensus 130 ~~l~~~~v~~~~~t--g~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~~G~i~~~G~r~~ev~~~~~~~~ 206 (438)
T 2dpy_A 130 NPLQRTPIEHVLDT--GVRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTRADVIVVGLIGERGREVKDFIENIL 206 (438)
T ss_dssp CTTTSCCCCSBCCC--SCHHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHHTTT
T ss_pred CceEEeccceecCC--CceEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEeceecHHHHHHHHhhc
Confidence 45899999999963 34699999 999999999999999999999999999999999999999999 665532
Q ss_pred -hHHHHhhcceeccc--cccccccHHHHHhc
Q 000984 1114 -LKWLRQQMGLVSQE--PVLFNDTIRANIAY 1141 (1198)
Q Consensus 1114 -l~~LR~~IsiV~Qd--p~LF~gTIreNI~~ 1141 (1198)
...+++.+++|+|+ |.+..-|+.+|+.+
T Consensus 207 ~~~~l~r~i~~v~q~~~~~~~~~~v~~~~~~ 237 (438)
T 2dpy_A 207 GPDGRARSVVIAAPADVSPLLRMQGAAYATR 237 (438)
T ss_dssp HHHHHHTEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred cccccCceEEEEECCCCCHHHHHHHHHHHHH
Confidence 45688999999994 45567799999865
|
| >2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A | Back alignment and structure |
|---|
Probab=99.24 E-value=4.8e-12 Score=148.16 Aligned_cols=150 Identities=21% Similarity=0.286 Sum_probs=102.7
Q ss_pred ccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcC----HHH--HhcceEEEcCCCCCC-cc
Q 000984 402 FSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQ----LQW--IRKKIGLVSQEPVLF-TG 474 (1198)
Q Consensus 402 l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~----~~~--~r~~i~~v~Q~~~l~-~~ 474 (1198)
-+++||++++|++++|+|+||||||||++.|.|++.+.+|+|.++|.|+.... +.. .|.+|+|++|++.++ ..
T Consensus 283 ~~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~p~~ 362 (503)
T 2yhs_A 283 DEPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSAS 362 (503)
T ss_dssp BCCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCCHHH
T ss_pred CCCceeeccCCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcCHHH
Confidence 35789999999999999999999999999999999999999999888775432 122 467899999998765 57
Q ss_pred cHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchh-cCCC-----CCCChHHHHHHhHHHhhcc-CC-CEEEE
Q 000984 475 SIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLV-GEHG-----TQLSGGQKQRIAIARAILK-DP-RILLL 546 (1198)
Q Consensus 475 ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v-~~~g-----~~lSgGqkqri~lARal~~-~~-~illl 546 (1198)
|+++|+.++... |.|..+ ..-| .++-.--+|++.++|++.. .| .++|.
T Consensus 363 tV~e~l~~a~~~------------------------~~DvVLIDTaGrl~~~~~lm~EL~kiv~iar~l~~~~P~evLLv 418 (503)
T 2yhs_A 363 VIFDAIQAAKAR------------------------NIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLT 418 (503)
T ss_dssp HHHHHHHHHHHT------------------------TCSEEEECCCCSCCCHHHHHHHHHHHHHHHHTTCTTCSSEEEEE
T ss_pred HHHHHHHHHHhc------------------------CCCEEEEeCCCccchhhhHHHHHHHHHHHHHHhccCCCCeeEEE
Confidence 899999864210 111111 1111 1121223578889998754 45 36666
Q ss_pred eCCCCCCCHHhHHHHHHHHHHHhCCCeEEEEec
Q 000984 547 DEATSALDAESEKVVQEALDRIMVNRTTVIVAH 579 (1198)
Q Consensus 547 De~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH 579 (1198)
.||+.+.|.... .+.+.+. -+.|.+++||
T Consensus 419 LDattGq~al~~---ak~f~~~-~~itgvIlTK 447 (503)
T 2yhs_A 419 IDASTGQNAVSQ---AKLFHEA-VGLTGITLTK 447 (503)
T ss_dssp EEGGGTHHHHHH---HHHHHHH-TCCSEEEEEC
T ss_pred ecCcccHHHHHH---HHHHHhh-cCCCEEEEEc
Confidence 668877554321 1122221 3679999999
|
| >2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.23 E-value=1.4e-13 Score=162.98 Aligned_cols=122 Identities=14% Similarity=0.053 Sum_probs=91.2
Q ss_pred ccEEEeeeeEECCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCC-e-EEECCcccCCCChHHHH
Q 000984 1041 GEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAG-H-ITLDGVEIQKLQLKWLR 1118 (1198)
Q Consensus 1041 G~I~f~nVsf~Y~~~~~~~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G-~-I~IDG~dI~~i~l~~LR 1118 (1198)
+-|+++||+|+|+ ++||+|++|++++|+||+|||||||+++|++++.|++| + |++|| | .|
T Consensus 117 ~mi~~~nl~~~y~---------~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~~G~~pI~vdg-~--------~~ 178 (460)
T 2npi_A 117 TMKYIYNLHFMLE---------KIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYALKFNAYQPLYINL-D--------PQ 178 (460)
T ss_dssp THHHHHHHHHHHH---------HHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTHHHHCCCCEEEEC-C--------TT
T ss_pred chhhhhhhhehhh---------cCceEeCCCCEEEEECCCCCCHHHHHHHHhCcccccCCceeEEEcC-C--------cc
Confidence 4588999998883 79999999999999999999999999999999999999 9 99999 2 47
Q ss_pred hhcceecccccccc----ccHHHHHhcCCCC---CCCHHHHHHHHHHcchHHH--HHhccccccceeeeeec
Q 000984 1119 QQMGLVSQEPVLFN----DTIRANIAYGKGG---DATEAEIQAASEMANAHKF--ICSLQQVRTSRLLLVMI 1181 (1198)
Q Consensus 1119 ~~IsiV~Qdp~LF~----gTIreNI~~g~~~---~~tdeei~~Al~~A~l~df--I~~LP~g~dt~v~~~~~ 1181 (1198)
+++++|||++.+|. .|++||+ ++... ...++.+.++++..++.++ ..+|..|...++++..+
T Consensus 179 ~~i~~vpq~~~l~~~~~~~tv~eni-~~~~~~~~~~~~~~~~~ll~~~gl~~~~~~~~LSgGq~qrlalAra 249 (460)
T 2npi_A 179 QPIFTVPGCISATPISDILDAQLPT-WGQSLTSGATLLHNKQPMVKNFGLERINENKDLYLECISQLGQVVG 249 (460)
T ss_dssp SCSSSCSSCCEEEECCSCCCTTCTT-CSCBCBSSCCSSCCBCCEECCCCSSSGGGCHHHHHHHHHHHHHHHH
T ss_pred CCeeeeccchhhcccccccchhhhh-cccccccCcchHHHHHHHHHHhCCCcccchhhhhHHHHHHHHHHHH
Confidence 89999999997664 4899999 75321 1112334444555554333 34555565555555444
|
| >2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A* | Back alignment and structure |
|---|
Probab=99.20 E-value=3.3e-13 Score=154.20 Aligned_cols=177 Identities=14% Similarity=0.195 Sum_probs=115.1
Q ss_pred EEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcC----HHHHhcc
Q 000984 386 LRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQ----LQWIRKK 461 (1198)
Q Consensus 386 ~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~----~~~~r~~ 461 (1198)
++|+++.|. ...+|+++|+++++|++++|+|++|||||||++.|.|++.|.+|+|.+.|.|+.... ....|.+
T Consensus 32 ~~~~~~~~~---~~~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~~~~~~~~~~~~~~ 108 (337)
T 2qm8_A 32 SRRADHRAA---VRDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDKTR 108 (337)
T ss_dssp CSSHHHHHH---HHHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCGGG
T ss_pred eCCcccccC---hHHHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCcccccccchHHHhhh
Confidence 344555563 235899999999999999999999999999999999999999999999998875432 1234678
Q ss_pred eEEEcCCCCCCc----------cc---HHHHHh-c---CCC---------CCCHHHHHHHHHH-------------hcHH
Q 000984 462 IGLVSQEPVLFT----------GS---IKDNIA-Y---GKD---------DATTEEIRVATEL-------------ANAA 502 (1198)
Q Consensus 462 i~~v~Q~~~l~~----------~t---i~~Ni~-~---~~~---------~~~~~~~~~~~~~-------------~~~~ 502 (1198)
+++++|+|.+|. || ++|.+. + +.+ ..++..+.+.++. ..+.
T Consensus 109 i~~v~q~~~~~~~~~~~~~~l~G~tr~~~e~~~~~~~~~~~~iliDT~Gi~~~~~~v~~~~d~vl~v~d~~~~~~~~~i~ 188 (337)
T 2qm8_A 109 MARLAIDRNAFIRPSPSSGTLGGVAAKTRETMLLCEAAGFDVILVETVGVGQSETAVADLTDFFLVLMLPGAGDELQGIK 188 (337)
T ss_dssp STTGGGCTTEEEECCCCCSSHHHHHHHHHHHHHHHHHTTCCEEEEEECSSSSCHHHHHTTSSEEEEEECSCC------CC
T ss_pred heeeccCcccccccCcccccccchHHHHHHHHHHHhcCCCCEEEEECCCCCcchhhHHhhCCEEEEEEcCCCcccHHHHH
Confidence 999999998874 22 333321 0 000 0011111100000 0000
Q ss_pred HHHHhCCCCcc-chhcC-CCCCCChHHHHHHhHHHhhcc------CCCEEEEeCCCCCCCHHhHHHHHHHHHHHh
Q 000984 503 KFIDKLPQGID-TLVGE-HGTQLSGGQKQRIAIARAILK------DPRILLLDEATSALDAESEKVVQEALDRIM 569 (1198)
Q Consensus 503 ~~i~~l~~g~~-t~v~~-~g~~lSgGqkqri~lARal~~------~~~illlDe~ts~lD~~~~~~i~~~i~~~~ 569 (1198)
+.+...|+-+- +.+.. ....+|+|++|++..|++++. +|+++. +||+|.+.-..+.+.|.+..
T Consensus 189 ~~i~~~~~ivvlNK~Dl~~~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~----~Sal~g~gi~~L~~~I~~~~ 259 (337)
T 2qm8_A 189 KGIFELADMIAVNKADDGDGERRASAAASEYRAALHILTPPSATWTPPVVT----ISGLHGKGLDSLWSRIEDHR 259 (337)
T ss_dssp TTHHHHCSEEEEECCSTTCCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEE----EBTTTTBSHHHHHHHHHHHH
T ss_pred HHHhccccEEEEEchhccCchhHHHHHHHHHHHHHHhccccccCCCCCEEE----EeCCCCCCHHHHHHHHHHHH
Confidence 00111121000 11111 113478999999999999987 688876 99999999888888887653
|
| >1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A | Back alignment and structure |
|---|
Probab=99.19 E-value=8e-13 Score=133.38 Aligned_cols=86 Identities=15% Similarity=0.094 Sum_probs=70.6
Q ss_pred eEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcceEEEcC
Q 000984 388 DVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQ 467 (1198)
Q Consensus 388 ~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q 467 (1198)
|++++|+ +..+++++||++++|++++|+||+|||||||+++|+|++ |.+|+|.++|.++.+. ...+ .+++|
T Consensus 12 ~~~~~~g---~~~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~~~G~V~~~g~~i~~~--~~~~---~~~~q 82 (158)
T 1htw_A 12 FSMLRFG---KKFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI-GHQGNVKSPTYTLVEE--YNIA---GKMIY 82 (158)
T ss_dssp HHHHHHH---HHHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT-TCCSCCCCCTTTCEEE--EEET---TEEEE
T ss_pred HHHHHHH---HHHHHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC-CCCCeEEECCEeeeee--ccCC---Cccee
Confidence 4455563 246899999999999999999999999999999999999 9999999999887421 1111 27999
Q ss_pred CCCCCcccHHHHHhc
Q 000984 468 EPVLFTGSIKDNIAY 482 (1198)
Q Consensus 468 ~~~l~~~ti~~Ni~~ 482 (1198)
++.+|.-|+.||+.+
T Consensus 83 ~~~l~~ltv~e~l~~ 97 (158)
T 1htw_A 83 HFDLYRLADPEELEF 97 (158)
T ss_dssp EEECTTCSCTTHHHH
T ss_pred ccccccCCcHHHHHH
Confidence 998888899999853
|
| >3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.18 E-value=4.3e-12 Score=140.18 Aligned_cols=101 Identities=20% Similarity=0.157 Sum_probs=61.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHhhcceeccccccccc-cHHHHHhcCCCC--CCCH
Q 000984 1073 TVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFND-TIRANIAYGKGG--DATE 1149 (1198)
Q Consensus 1073 kvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~~i~l~~LR~~IsiV~Qdp~LF~g-TIreNI~~g~~~--~~td 1149 (1198)
++|||||||||||||+++|+++..|++|+|.++|.++.. ...|+.+++++|++.++.. |+.||+.||... ....
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~---~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~ 80 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPK---TVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCW 80 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC------------CCC---CCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCc---ceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHH
Confidence 589999999999999999999999999999999998843 3457889999999988865 999999988431 1223
Q ss_pred HHHHHHHHHcchHHHHHhcccccccee
Q 000984 1150 AEIQAASEMANAHKFICSLQQVRTSRL 1176 (1198)
Q Consensus 1150 eei~~Al~~A~l~dfI~~LP~g~dt~v 1176 (1198)
+.+.+.++....+.....|..|..-++
T Consensus 81 ~~i~~~~~~~~~~~~~~~LS~G~~qrv 107 (270)
T 3sop_A 81 EPIEKYINEQYEKFLKEEVNIARKKRI 107 (270)
T ss_dssp HHHHHHHHHHHHHHHHHHSCTTCCSSC
T ss_pred HHHHHHHHHHHHhhhHHhcCcccchhh
Confidence 455555554444555667777776554
|
| >1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A* | Back alignment and structure |
|---|
Probab=99.17 E-value=8.5e-14 Score=162.57 Aligned_cols=129 Identities=16% Similarity=0.161 Sum_probs=87.3
Q ss_pred cccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCC----cCHHHHhcceEEEc---------C
Q 000984 401 IFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKE----FQLQWIRKKIGLVS---------Q 467 (1198)
Q Consensus 401 ~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~----~~~~~~r~~i~~v~---------Q 467 (1198)
+|+++ + .++|+.++|+||||||||||+++|+|+++|.+|+|.++|.++.. ++...++.++++.+ |
T Consensus 158 ~L~~l-~-~~~ggii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ed~ie~~~~~~~q~~v~~~~g~~f~~~lr~~Lrq 235 (418)
T 1p9r_A 158 NFRRL-I-KRPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPIEFDIDGIGQTQVNPRVDMTFARGLRAILRQ 235 (418)
T ss_dssp HHHHH-H-TSSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSCCSCCSSSEEEECBGGGTBCHHHHHHHHGGG
T ss_pred HHHHH-H-HhcCCeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEecccchhccCCcceEEEccccCcCHHHHHHHHhcc
Confidence 45555 3 37899999999999999999999999999999999999877632 11122344565544 9
Q ss_pred CCCCC--c-----ccHHHHHhcCCC---------CCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHH
Q 000984 468 EPVLF--T-----GSIKDNIAYGKD---------DATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRI 531 (1198)
Q Consensus 468 ~~~l~--~-----~ti~~Ni~~~~~---------~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri 531 (1198)
+|.++ . .|+++|+.++.. ..+..+....+... |++... ...+|||||+||
T Consensus 236 ~pd~i~vgEiRd~et~~~~l~a~~tGhlv~~tlh~~~~~~~i~rL~~l-----------gl~~~~--~~~~LSgg~~QR- 301 (418)
T 1p9r_A 236 DPDVVMVGEIRDLETAQIAVQASLTGHLVMSTLHTNTAVGAVTRLRDM-----------GIEPFL--ISSSLLGVLAQR- 301 (418)
T ss_dssp CCSEEEESCCCSHHHHHHHHHHHHTTCEEEEEECCSSSHHHHHHHHHH-----------TCCHHH--HHHHEEEEEEEE-
T ss_pred CCCeEEEcCcCCHHHHHHHHHHHHhCCCcccccchhhHHHHHHHHHHc-----------CCcHHH--HHHHHHHHHHHH-
Confidence 99753 2 489999875311 01112222222221 222211 234799999999
Q ss_pred hHHHhhccCCCEEEE
Q 000984 532 AIARAILKDPRILLL 546 (1198)
Q Consensus 532 ~lARal~~~~~illl 546 (1198)
|||+++.+|++..-
T Consensus 302 -LaraL~~~p~~~~~ 315 (418)
T 1p9r_A 302 -LVRTLCPDCKEPYE 315 (418)
T ss_dssp -EEEEECTTTCEEEE
T ss_pred -hhhhhcCCCCccCC
Confidence 99999999998763
|
| >2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=99.16 E-value=1.1e-13 Score=145.31 Aligned_cols=162 Identities=13% Similarity=0.055 Sum_probs=103.7
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcceEEEcCCCCCC-cccHHHHHhcCCCCCCHH
Q 000984 412 GTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLF-TGSIKDNIAYGKDDATTE 490 (1198)
Q Consensus 412 g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~-~~ti~~Ni~~~~~~~~~~ 490 (1198)
|++++|+||+|||||||++.|.+ +.+|.+.++|.++.+. ...++++|.+... ..++++|+.+..
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~---~~~g~~~i~~d~~~~~------~~~~~~~~~~~~~~~~~~~~~l~~~~------ 66 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAA---QLDNSAYIEGDIINHM------VVGGYRPPWESDELLALTWKNITDLT------ 66 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH---HSSSEEEEEHHHHHTT------CCTTCCCGGGCHHHHHHHHHHHHHHH------
T ss_pred CeEEEEECCCCCcHHHHHHHHhc---ccCCeEEEcccchhhh------hccccccCccchhHHHHHHHHHHHHH------
Confidence 67899999999999999999997 6679999988554321 2456777765322 347777765310
Q ss_pred HHHHHHHHhcHHHHHHhCCCCccchhcC--------CCCCC--ChHHHHHHhHHH------hhccCCCEEEEeCCCCCCC
Q 000984 491 EIRVATELANAAKFIDKLPQGIDTLVGE--------HGTQL--SGGQKQRIAIAR------AILKDPRILLLDEATSALD 554 (1198)
Q Consensus 491 ~~~~~~~~~~~~~~i~~l~~g~~t~v~~--------~g~~l--SgGqkqri~lAR------al~~~~~illlDe~ts~lD 554 (1198)
... .. .|.+..+.. .-..+ |+||+|++.++. +++++++...+|+ ++|
T Consensus 67 --~~~---------~~---~~~~~ild~~~~~~~~~~~~~~~~s~g~~~~~~~i~L~~~~e~l~~R~~~r~~d~---~ld 129 (189)
T 2bdt_A 67 --VNF---------LL---AQNDVVLDYIAFPDEAEALAQTVQAKVDDVEIRFIILWTNREELLRRDALRKKDE---QMG 129 (189)
T ss_dssp --HHH---------HH---TTCEEEEESCCCHHHHHHHHHHHHHHCSSEEEEEEEEECCHHHHHHHTTTSCC-------C
T ss_pred --HHH---------Hh---cCCcEEEeeccCHHHHHHHHHHHHhcccCCCeEEEEEeCCHHHHHHHHHhccccc---cCC
Confidence 000 00 011111110 00123 888888888888 8888888877884 789
Q ss_pred HHhHHHHHHHHHHHhC-CCeEEEEecC-cchhhc-cCEEEEEeCCEEEEecChhhHh
Q 000984 555 AESEKVVQEALDRIMV-NRTTVIVAHR-LSTVRN-ADMIAVIHRGKIVEKGTHSKLV 608 (1198)
Q Consensus 555 ~~~~~~i~~~i~~~~~-~~t~i~itH~-~~~~~~-~d~i~~l~~G~i~~~g~~~~l~ 608 (1198)
+...+. .+.+....+ +.++|..+|. ++.+.. ||+|+ ++|+++..|+++-|.
T Consensus 130 ~~~~~~-~~~~~~~~~~~~~ii~tsh~~~~~~e~~~~~i~--~~g~~~~~~~~~~~~ 183 (189)
T 2bdt_A 130 ERCLEL-VEEFESKGIDERYFYNTSHLQPTNLNDIVKNLK--TNPRFIFCMAGDPLE 183 (189)
T ss_dssp GGGGHH-HHHHHHTTCCTTSEEECSSSCGGGHHHHHHHHH--HCGGGSCC-------
T ss_pred HHHHHH-HHHHhhcCCCccEEEeCCCCChhhHHHHHHHHh--hCCcEEEeecCCchh
Confidence 887666 666666543 5788889999 888876 99998 999999999887663
|
| >3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B* | Back alignment and structure |
|---|
Probab=99.16 E-value=5.1e-11 Score=138.49 Aligned_cols=74 Identities=27% Similarity=0.420 Sum_probs=67.0
Q ss_pred CCCChHHHHHH------hHHHhhccC-CCEEEEeCCCCCCCHHhHHHHHHHHHHHhCCCeEEEEecCcchhhccCEEEEE
Q 000984 521 TQLSGGQKQRI------AIARAILKD-PRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVI 593 (1198)
Q Consensus 521 ~~lSgGqkqri------~lARal~~~-~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~~d~i~~l 593 (1198)
..||||||||+ ++|||+..+ |++|||||||++||+.+...+.+.+.++.+++++|++||+++....||++++|
T Consensus 279 ~~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~vi~~th~~~~~~~~d~~~~l 358 (371)
T 3auy_A 279 DNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVKSIPQMIIITHHRELEDVADVIINV 358 (371)
T ss_dssp GGSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHHHHHHHHHHHCCSCSEEEEEESCGGGGGGCSEEEEE
T ss_pred HhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHHHHHHHHHHHhccCCeEEEEEChHHHHhhCCEEEEE
Confidence 57999999988 668999999 99999999999999999999999998865567999999999866679999999
Q ss_pred e
Q 000984 594 H 594 (1198)
Q Consensus 594 ~ 594 (1198)
+
T Consensus 359 ~ 359 (371)
T 3auy_A 359 K 359 (371)
T ss_dssp E
T ss_pred E
Confidence 7
|
| >2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1 | Back alignment and structure |
|---|
Probab=99.16 E-value=2.4e-13 Score=163.06 Aligned_cols=172 Identities=14% Similarity=0.179 Sum_probs=112.8
Q ss_pred CccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcceEEEcCCCCCCc--ccH
Q 000984 399 EQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFT--GSI 476 (1198)
Q Consensus 399 ~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~~--~ti 476 (1198)
+.+++++++.+++|+.++|+||||||||||+++|+|+++|.+|.|.++|.+--..+. +..++++.|.+. .. .|.
T Consensus 247 ~~~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~~~~giitied~~E~~~~~---~~~v~~~~r~~~-~~~~~~~ 322 (511)
T 2oap_1 247 SGVLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIEDTREIKLYH---ENWIAEVTRTGM-GEGEIDM 322 (511)
T ss_dssp HHHHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESSCCCCCCC---SSEEEEECBCCS-SSCCBCH
T ss_pred HHHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcCcccccCCC---CCeEEEEeeccc-ccCCcCH
Confidence 346889999999999999999999999999999999999999999999865222221 345777877765 32 367
Q ss_pred HHHHhcC---CC------CCCHHHHHHHHHHhc-------------HHHHHHh---CCCCccchhc-------CCCCCCC
Q 000984 477 KDNIAYG---KD------DATTEEIRVATELAN-------------AAKFIDK---LPQGIDTLVG-------EHGTQLS 524 (1198)
Q Consensus 477 ~~Ni~~~---~~------~~~~~~~~~~~~~~~-------------~~~~i~~---l~~g~~t~v~-------~~g~~lS 524 (1198)
++++... .| +.++.+...+++... ..+.+.. .|.|....+. .....+|
T Consensus 323 ~~~l~~~LR~~PD~iivgEir~~E~~~~l~a~~tGh~~~sT~Ha~~~~~~l~Rl~~~~~~v~~~l~~~l~~vi~~~~~~s 402 (511)
T 2oap_1 323 YDLLRAALRQRPDYIIVGEVRGREAQTLFQAMSTGHASYSTLHAGDINQMVYRLESEPLKVPRSMLQFLDIALVQTMWVR 402 (511)
T ss_dssp HHHHHTTGGGCCSEEEESCCCSTHHHHHHHHHHTTCEEEEEEECSSHHHHHHHHHSTTTCCCGGGGGGCCEEEEEEEEES
T ss_pred HHHHHHhhccCCCeEEeCCcCHHHHHHHHHhhcCCCCcccccccCCHHHHHHHHHhcccccHHHHHhhccEEEEEEEEEe
Confidence 7766422 12 344444444443321 1222222 2223332221 1233579
Q ss_pred hHHHHHHhHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh-CCCeEEE--EecCcchhhc
Q 000984 525 GGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVI--VAHRLSTVRN 586 (1198)
Q Consensus 525 gGqkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~--itH~~~~~~~ 586 (1198)
+|||||.++|.+ | ++++|++..+.+.+.+.++. .++|+++ +||.++.+..
T Consensus 403 ~G~~~R~~~ai~-----------E-~~GlDp~~~~~~~~~l~~~~~~~~tii~~~~sH~l~ei~~ 455 (511)
T 2oap_1 403 GNTRLRRTKEVN-----------E-ILGIDPVDKNLLVNQFVKWDPKEDKHIEVSMPKKLEKMAD 455 (511)
T ss_dssp SSCEEEEEEEEE-----------E-EEECCSSSSCCEEEEEEEEETTTTEEEECSCCTHHHHHHH
T ss_pred CCCceEEEEEEE-----------E-EcCcccCCCeEEEEEeEEEcccCCEEEEcccHHHHHHHHH
Confidence 999999887622 6 99999987665555554443 3678775 7999987753
|
| >3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.14 E-value=1.2e-11 Score=138.78 Aligned_cols=82 Identities=18% Similarity=0.259 Sum_probs=69.2
Q ss_pred cccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCC----hHHH--Hhhcceeccccc-cc-c
Q 000984 1061 FRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQ----LKWL--RQQMGLVSQEPV-LF-N 1132 (1198)
Q Consensus 1061 L~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~~i~----l~~L--R~~IsiV~Qdp~-LF-~ 1132 (1198)
++++||++++|+.++||||+||||||+++.|.+++.|++|+|.++|.|+.... +..+ |.+|++|+|++. ++ .
T Consensus 90 ~~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~~~~ 169 (302)
T 3b9q_A 90 KTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAA 169 (302)
T ss_dssp CCSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CCCHH
T ss_pred ccccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCccCHH
Confidence 46789999999999999999999999999999999999999999999987653 3344 457999999997 65 5
Q ss_pred ccHHHHHhcC
Q 000984 1133 DTIRANIAYG 1142 (1198)
Q Consensus 1133 gTIreNI~~g 1142 (1198)
.|+++|+.++
T Consensus 170 ~~v~e~l~~~ 179 (302)
T 3b9q_A 170 TVLSKAVKRG 179 (302)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5899999753
|
| >2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V | Back alignment and structure |
|---|
Probab=99.14 E-value=2.9e-11 Score=137.39 Aligned_cols=121 Identities=16% Similarity=0.141 Sum_probs=81.5
Q ss_pred cccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCC-CCCCeEEEC-CeecCCcCHHHHhcceEEEcCCCCCCc-ccHH
Q 000984 401 IFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYD-PQAGEVLID-GINLKEFQLQWIRKKIGLVSQEPVLFT-GSIK 477 (1198)
Q Consensus 401 ~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~-~~~G~i~i~-g~~~~~~~~~~~r~~i~~v~Q~~~l~~-~ti~ 477 (1198)
-++++++. .+|++++|+||||||||||+++|+|+.. |..|+|.++ |.+.. ...+..+++++|+++++. .+++
T Consensus 205 gl~~L~~~-~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~~G~I~~~~G~g~~----tt~~~~i~~v~q~~~l~dtpgv~ 279 (358)
T 2rcn_A 205 GLKPLEEA-LTGRISIFAGQSGVGKSSLLNALLGLQNEILTNDVSNVSGLGQH----TTTAARLYHFPHGGDVIDSPGVR 279 (358)
T ss_dssp THHHHHHH-HTTSEEEEECCTTSSHHHHHHHHHCCSSCCCCC-----------------CCCEEEECTTSCEEEECHHHH
T ss_pred CHHHHHHh-cCCCEEEEECCCCccHHHHHHHHhccccccccCCccccCCCCcc----ceEEEEEEEECCCCEecCcccHH
Confidence 56777775 4899999999999999999999999999 999999987 75432 134568999999998875 5899
Q ss_pred HHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhh
Q 000984 478 DNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAI 537 (1198)
Q Consensus 478 ~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal 537 (1198)
++-. ...+.+++... ..+.++.+ |+....+....++| ||+||++||+++
T Consensus 280 e~~l---~~l~~~e~~~~-----~~e~l~~~--gl~~f~~~~~~~lS-G~~~r~ala~gl 328 (358)
T 2rcn_A 280 EFGL---WHLEPEQITQG-----FVEFHDYL--GHCKYRDCKHDADP-GCAIREAVENGA 328 (358)
T ss_dssp TCCC---CCCCHHHHHHT-----SGGGGGGT--TCSSSTTCCSSSCT-TCHHHHHHHHTS
T ss_pred Hhhh---cCCCHHHHHHH-----HHHHHHHc--CCchhcCCCcccCC-HHHHHHHHHhcC
Confidence 8632 23344443321 12223333 44444566667899 999999999986
|
| >2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.14 E-value=4.5e-12 Score=146.85 Aligned_cols=95 Identities=22% Similarity=0.244 Sum_probs=67.5
Q ss_pred cEEEeeeeEECCCCCCccccccceEEeeCCCE--EEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHh
Q 000984 1042 EIELHHVSFKYPSRPDVQVFRDLNLKIRAGKT--VALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQ 1119 (1198)
Q Consensus 1042 ~I~f~nVsf~Y~~~~~~~vL~~is~~I~~Gek--vaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~~i~l~~LR~ 1119 (1198)
.+++++ +++|++ .+ |+|+||+|++|+. +|||||||||||||+++|+|+. ++|.++........|+
T Consensus 16 ~l~~~~-~~~y~~---~~-L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~--------l~g~~~~~~~~~~~~~ 82 (427)
T 2qag_B 16 TVPLAG-HVGFDS---LP-DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTK--------FEGEPATHTQPGVQLQ 82 (427)
T ss_dssp -CCCCC-CC-CC-----C-HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSC--------C-------CCSSCEEE
T ss_pred eEEEee-EEEECC---ee-cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCcc--------ccCCcCCCCCccceEe
Confidence 466777 788853 35 9999999999999 9999999999999999999983 6677776655555677
Q ss_pred hcceeccccccc-cccHHHHHhcCCCCCCCHHH
Q 000984 1120 QMGLVSQEPVLF-NDTIRANIAYGKGGDATEAE 1151 (1198)
Q Consensus 1120 ~IsiV~Qdp~LF-~gTIreNI~~g~~~~~tdee 1151 (1198)
.+++|+|++.++ .-|+.||+.||. ..+.+.
T Consensus 83 ~i~~v~Q~~~l~~~ltv~D~~~~g~--~~~~~~ 113 (427)
T 2qag_B 83 SNTYDLQESNVRLKLTIVSTVGFGD--QINKED 113 (427)
T ss_dssp EEEEEEEC--CEEEEEEEEEECCCC---CCHHH
T ss_pred eEEEEeecCccccccchhhhhhhhh--ccccch
Confidence 899999999887 569999999884 344443
|
| >2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A | Back alignment and structure |
|---|
Probab=99.13 E-value=2e-12 Score=141.57 Aligned_cols=157 Identities=17% Similarity=0.198 Sum_probs=104.4
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHh---ccCCCCCCeEEECCeecCCcCHHHHhcceEEEcCCCCCC-cccHHHHHhcC---
Q 000984 411 SGTTAALVGQSGSGKSTVISLIE---RFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLF-TGSIKDNIAYG--- 483 (1198)
Q Consensus 411 ~g~~~~ivG~~GsGKStl~~~l~---g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~-~~ti~~Ni~~~--- 483 (1198)
++++++|+||+|||||||+++|. |+..|+.|+|.++|.+.. ..+...+.+++|++.++ ..++.+|+...
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~~G~i~~~~~~~~----~~~~~~i~~~~~~~~~~~~~~v~~~l~~~l~~ 101 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRENIKAS----TEVGEMAKQYIEKSLLVPDHVITRLMMSELEN 101 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCCEEHHHHHHHHHHTT----CHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHHHHhcC----ChHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh
Confidence 47999999999999999999999 999999999988775432 12344567778887665 45888888641
Q ss_pred ----------CCCCCHHHHHHHHHHhcHHHHHHhCC-CC------------ccchhcCCCCCCChHHHHHHhHHHhh-cc
Q 000984 484 ----------KDDATTEEIRVATELANAAKFIDKLP-QG------------IDTLVGEHGTQLSGGQKQRIAIARAI-LK 539 (1198)
Q Consensus 484 ----------~~~~~~~~~~~~~~~~~~~~~i~~l~-~g------------~~t~v~~~g~~lSgGqkqri~lARal-~~ 539 (1198)
.+ .+.++... +..+. -+ ++-........||| |+ ||+ +.
T Consensus 102 ~~~~~~il~g~~-~~~~~~~~----------l~~~~~~~~vi~L~~~~~~~l~r~~~r~~~~lSg----rv---~al~~~ 163 (246)
T 2bbw_A 102 RRGQHWLLDGFP-RTLGQAEA----------LDKICEVDLVISLNIPFETLKDRLSRRWIHPPSG----RV---YNLDFN 163 (246)
T ss_dssp CTTSCEEEESCC-CSHHHHHH----------HHTTCCCCEEEEEECCHHHHHHHHHTEEEETTTT----EE---EETTTS
T ss_pred cCCCeEEEECCC-CCHHHHHH----------HHhhcCCCEEEEEECCHHHHHHHHHcCCCcCCCC----Cc---cccccC
Confidence 11 11211111 11111 01 11112344457898 55 888 99
Q ss_pred CCCEEEEe----CCCCCCCHHhHHHHHHHHHHHhCCC-eEEEEecCcchhhccCEEEEEeC
Q 000984 540 DPRILLLD----EATSALDAESEKVVQEALDRIMVNR-TTVIVAHRLSTVRNADMIAVIHR 595 (1198)
Q Consensus 540 ~~~illlD----e~ts~lD~~~~~~i~~~i~~~~~~~-t~i~itH~~~~~~~~d~i~~l~~ 595 (1198)
+|++++|| |||+++|..+...+.+.++.+.+.. ++ .......+++++++.
T Consensus 164 ~P~~lllD~~~~EP~~~ld~~~~~~i~~~l~~~~~~~~~v------~~~~~~~~~~~~id~ 218 (246)
T 2bbw_A 164 PPHVHGIDDVTGEPLVQQEDDKPEAVAARLRQYKDVAKPV------IELYKSRGVLHQFSG 218 (246)
T ss_dssp CCSSTTBCTTTCCBCBCCGGGSHHHHHHHHHHHHHHHHHH------HHHHHHTTCEEEEEC
T ss_pred CCcccccccccccccccCCCCcHHHHHHHHHHHHHhHHHH------HHHHhhcCcEEEECC
Confidence 99999999 9999999999988888887754321 11 122333456777664
|
| >1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A* | Back alignment and structure |
|---|
Probab=99.12 E-value=2.9e-12 Score=148.87 Aligned_cols=92 Identities=23% Similarity=0.290 Sum_probs=74.3
Q ss_pred cccccceEEeeCCC--------------------EEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHH
Q 000984 1059 QVFRDLNLKIRAGK--------------------TVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLR 1118 (1198)
Q Consensus 1059 ~vL~~is~~I~~Ge--------------------kvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~~i~l~~LR 1118 (1198)
.+|+||||+|++|+ .+||+||||||||||+++|.|+++|++|+|.++|.++. |
T Consensus 37 ~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t-------~ 109 (413)
T 1tq4_A 37 EILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVT-------M 109 (413)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC-----------C
T ss_pred HHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecc-------e
Confidence 58999999999999 99999999999999999999999999999999998864 1
Q ss_pred hhcceeccccccccccHHHHHhcCCCCCCCHHHHHHHHHHcchHH
Q 000984 1119 QQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHK 1163 (1198)
Q Consensus 1119 ~~IsiV~Qdp~LF~gTIreNI~~g~~~~~tdeei~~Al~~A~l~d 1163 (1198)
.++|+|++...+-|++||+.++.. ++.+.++++..++.+
T Consensus 110 --~~~v~q~~~~~~ltv~D~~g~~~~----~~~~~~~L~~~~L~~ 148 (413)
T 1tq4_A 110 --ERHPYKHPNIPNVVFWDLPGIGST----NFPPDTYLEKMKFYE 148 (413)
T ss_dssp --CCEEEECSSCTTEEEEECCCGGGS----SCCHHHHHHHTTGGG
T ss_pred --eEEeccccccCCeeehHhhcccch----HHHHHHHHHHcCCCc
Confidence 288999986567899999987632 234566666666543
|
| >3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A* | Back alignment and structure |
|---|
Probab=99.11 E-value=6e-11 Score=137.73 Aligned_cols=146 Identities=16% Similarity=0.246 Sum_probs=91.1
Q ss_pred EEeCCCEEEEEcCCCCcHHHHHHH--HhccCCCCCC-----eEEECCeec-CCcCHHHHhcceEEEcCCCCCCcccHHHH
Q 000984 408 SISSGTTAALVGQSGSGKSTVISL--IERFYDPQAG-----EVLIDGINL-KEFQLQWIRKKIGLVSQEPVLFTGSIKDN 479 (1198)
Q Consensus 408 ~i~~g~~~~ivG~~GsGKStl~~~--l~g~~~~~~G-----~i~i~g~~~-~~~~~~~~r~~i~~v~Q~~~l~~~ti~~N 479 (1198)
-|++|++++|+||+|||||||++. +.+..++..| .+++++.+. .......+++++++.+| ++.+|
T Consensus 174 GI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~~~a~~~gl~~~-------~vlen 246 (400)
T 3lda_A 174 GVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVSIAQRFGLDPD-------DALNN 246 (400)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHH-------HHHHT
T ss_pred CcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHHHHHHHcCCChH-------hHhhc
Confidence 588999999999999999999994 4566665433 788888653 12223334455666554 56777
Q ss_pred HhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhh--ccCCCEEEEeCCCCCCCHHh
Q 000984 480 IAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAI--LKDPRILLLDEATSALDAES 557 (1198)
Q Consensus 480 i~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal--~~~~~illlDe~ts~lD~~~ 557 (1198)
+.+..+. +.+.... ++.-++++ -.+|+++++|||++.+|++.
T Consensus 247 i~~~~~~-~~~~~~~-----------------------------------~l~~~~~~l~~~~~~llVIDs~t~~~~~~~ 290 (400)
T 3lda_A 247 VAYARAY-NADHQLR-----------------------------------LLDAAAQMMSESRFSLIVVDSVMALYRTDF 290 (400)
T ss_dssp EEEEECC-SHHHHHH-----------------------------------HHHHHHHHHHHSCEEEEEEETGGGGCC---
T ss_pred EEEeccC-ChHHHHH-----------------------------------HHHHHHHHHHhcCCceEEecchhhhCchhh
Confidence 7665432 2222211 11111111 14799999999999999753
Q ss_pred H------------HHHHHHHHHHh--CCCeEEEEecCcc-------------------hhhc-cCEEEEEeCC
Q 000984 558 E------------KVVQEALDRIM--VNRTTVIVAHRLS-------------------TVRN-ADMIAVIHRG 596 (1198)
Q Consensus 558 ~------------~~i~~~i~~~~--~~~t~i~itH~~~-------------------~~~~-~d~i~~l~~G 596 (1198)
. ..+.+.|+++. .+.|+|+|+|-.. .+.+ +|.++.|++|
T Consensus 291 sg~g~l~~Rq~~l~~il~~L~~lake~gitVIlv~Hv~~~~~g~~~~~g~~~~p~gg~~l~~~ad~vl~L~~~ 363 (400)
T 3lda_A 291 SGRGELSARQMHLAKFMRALQRLADQFGVAVVVTNQVVAQVDGGMAFNPDPKKPIGGNIMAYSSTTRLGFKKG 363 (400)
T ss_dssp ---CCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEC--------------------CHHHHHCSEEEEEEEC
T ss_pred cCccchHHHHHHHHHHHHHHHHHHHHcCCEEEEEEeecccCCccccccCCCccCCchhHHHHhcceEEEEEec
Confidence 2 33455555543 3789999999832 2333 7888888765
|
| >2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B} | Back alignment and structure |
|---|
Probab=99.09 E-value=9.8e-11 Score=117.16 Aligned_cols=91 Identities=18% Similarity=0.241 Sum_probs=66.9
Q ss_pred cccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCC--eEEECCeecCCcCHHHHhcceEEEcCCCCCCcccHHH
Q 000984 401 IFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAG--EVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKD 478 (1198)
Q Consensus 401 ~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G--~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~ 478 (1198)
+|+++ +|+.++|+||+|||||||++++.+++.+ +| .+.+++.++.. .
T Consensus 30 ~l~~~-----~g~~~~l~G~~G~GKTtL~~~i~~~~~~-~g~~~~~~~~~~~~~--------------------~----- 78 (149)
T 2kjq_A 30 VLRHK-----HGQFIYVWGEEGAGKSHLLQAWVAQALE-AGKNAAYIDAASMPL--------------------T----- 78 (149)
T ss_dssp HCCCC-----CCSEEEEESSSTTTTCHHHHHHHHHHHT-TTCCEEEEETTTSCC--------------------C-----
T ss_pred HHHhc-----CCCEEEEECCCCCCHHHHHHHHHHHHHh-cCCcEEEEcHHHhhH--------------------H-----
Confidence 45666 8999999999999999999999999876 46 44444422111 0
Q ss_pred HHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhhccCCCEEEEeCCCCCCCHHhH
Q 000984 479 NIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESE 558 (1198)
Q Consensus 479 Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal~~~~~illlDe~ts~lD~~~~ 558 (1198)
+++.+|++|+||||++ +|....
T Consensus 79 ---------------------------------------------------------~~~~~~~lLilDE~~~-~~~~~~ 100 (149)
T 2kjq_A 79 ---------------------------------------------------------DAAFEAEYLAVDQVEK-LGNEEQ 100 (149)
T ss_dssp ---------------------------------------------------------GGGGGCSEEEEESTTC-CCSHHH
T ss_pred ---------------------------------------------------------HHHhCCCEEEEeCccc-cChHHH
Confidence 2356899999999998 655557
Q ss_pred HHHHHHHHHHh-CCCe-EEEEecC
Q 000984 559 KVVQEALDRIM-VNRT-TVIVAHR 580 (1198)
Q Consensus 559 ~~i~~~i~~~~-~~~t-~i~itH~ 580 (1198)
+.+.+.+.... ++++ +|++||+
T Consensus 101 ~~l~~li~~~~~~g~~~iiits~~ 124 (149)
T 2kjq_A 101 ALLFSIFNRFRNSGKGFLLLGSEY 124 (149)
T ss_dssp HHHHHHHHHHHHHTCCEEEEEESS
T ss_pred HHHHHHHHHHHHcCCcEEEEECCC
Confidence 77777777654 3577 6777774
|
| >1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=99.09 E-value=5.8e-11 Score=137.49 Aligned_cols=138 Identities=18% Similarity=0.223 Sum_probs=78.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhc-cCCCCCCeEEECCeecCCcCHHHHhcceEEEcCCCCCC-cccHHHHHhcCCCCCCHHH
Q 000984 414 TAALVGQSGSGKSTVISLIER-FYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLF-TGSIKDNIAYGKDDATTEE 491 (1198)
Q Consensus 414 ~~~ivG~~GsGKStl~~~l~g-~~~~~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~-~~ti~~Ni~~~~~~~~~~~ 491 (1198)
.+.|+||+|+||||+++++.| ++.|..|.+.++|.+...... .+..+++++|.+++. +.+- .+. .....
T Consensus 38 ~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~-----~~~--~~~~~ 108 (354)
T 1sxj_E 38 HLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASN--RKLELNVVSSPYHLEITPSD-----MGN--NDRIV 108 (354)
T ss_dssp CEEEECSTTSSHHHHHHTHHHHHSCTTCCC--------------------CCEECSSEEEECCC-----------CCHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeeccccc--ccceeeeecccceEEecHhh-----cCC--cchHH
Confidence 499999999999999999999 789999999999987654322 267899999988653 2110 010 11112
Q ss_pred HHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhCC
Q 000984 492 IRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVN 571 (1198)
Q Consensus 492 ~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~ 571 (1198)
+.+..+. ..... +++..+ .||| +..+|+++|+|||++ ||+.+...+.+.+++..++
T Consensus 109 ~~~~i~~-----~~~~~--~~~~~~-----~ls~-----------l~~~~~vlilDE~~~-L~~~~~~~L~~~le~~~~~ 164 (354)
T 1sxj_E 109 IQELLKE-----VAQME--QVDFQD-----SKDG-----------LAHRYKCVIINEANS-LTKDAQAALRRTMEKYSKN 164 (354)
T ss_dssp HHHHHHH-----HTTTT--C----------------------------CCEEEEEECTTS-SCHHHHHHHHHHHHHSTTT
T ss_pred HHHHHHH-----HHHhc--cccccc-----cccc-----------cCCCCeEEEEeCccc-cCHHHHHHHHHHHHhhcCC
Confidence 2222211 11111 122111 4566 778999999999999 9999999999999887677
Q ss_pred CeEEEEecCcchh
Q 000984 572 RTTVIVAHRLSTV 584 (1198)
Q Consensus 572 ~t~i~itH~~~~~ 584 (1198)
+++|++||+++.+
T Consensus 165 ~~~Il~t~~~~~l 177 (354)
T 1sxj_E 165 IRLIMVCDSMSPI 177 (354)
T ss_dssp EEEEEEESCSCSS
T ss_pred CEEEEEeCCHHHH
Confidence 8999999998754
|
| >3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.09 E-value=4.5e-12 Score=134.20 Aligned_cols=63 Identities=11% Similarity=0.161 Sum_probs=51.4
Q ss_pred ccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHhhcceecccc
Q 000984 1058 VQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMGLVSQEP 1128 (1198)
Q Consensus 1058 ~~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~~i~l~~LR~~IsiV~Qdp 1128 (1198)
..+|+|| ++||.+||+||+|||||||+++|.++ .|++|+|. +.++.. +...+|++|++|||++
T Consensus 13 ~~~l~~i----~~Ge~~~liG~nGsGKSTLl~~l~Gl-~p~~G~I~--~~~~~~-~~~~~~~~ig~v~q~~ 75 (208)
T 3b85_A 13 KHYVDAI----DTNTIVFGLGPAGSGKTYLAMAKAVQ-ALQSKQVS--RIILTR-PAVEAGEKLGFLPGTL 75 (208)
T ss_dssp HHHHHHH----HHCSEEEEECCTTSSTTHHHHHHHHH-HHHTTSCS--EEEEEE-CSCCTTCCCCSSCC--
T ss_pred HHHHHhc----cCCCEEEEECCCCCCHHHHHHHHhcC-CCcCCeee--eEEecC-CchhhhcceEEecCCH
Confidence 3589996 89999999999999999999999999 99999994 344432 3335688999999998
|
| >3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B* | Back alignment and structure |
|---|
Probab=99.09 E-value=1.6e-10 Score=130.69 Aligned_cols=141 Identities=19% Similarity=0.166 Sum_probs=95.6
Q ss_pred EeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHH----HHhc--ceEEEcCCCCCCc-ccHHHHHh
Q 000984 409 ISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQ----WIRK--KIGLVSQEPVLFT-GSIKDNIA 481 (1198)
Q Consensus 409 i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~----~~r~--~i~~v~Q~~~l~~-~ti~~Ni~ 481 (1198)
.++|++++|+|||||||||+++.|.|++.|.+|+|.++|.|+...... .+++ .+.+++|++.++. .++++|+.
T Consensus 126 ~~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l~ 205 (328)
T 3e70_C 126 AEKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAIQ 205 (328)
T ss_dssp SCSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHHH
Confidence 468999999999999999999999999999999999999998766532 2333 4559999988774 68999997
Q ss_pred cCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccc-hhcCCCC--CCChHHHHHHhHHHhhccCCCEEEEeCCCCCCCHHhH
Q 000984 482 YGKDDATTEEIRVATELANAAKFIDKLPQGIDT-LVGEHGT--QLSGGQKQRIAIARAILKDPRILLLDEATSALDAESE 558 (1198)
Q Consensus 482 ~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t-~v~~~g~--~lSgGqkqri~lARal~~~~~illlDe~ts~lD~~~~ 558 (1198)
++.. . +.+. .+...|. .-..=.++.-.++|++..++++++||.++. .|.
T Consensus 206 ~~~~-----------------~-------~~d~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~-~~~--- 257 (328)
T 3e70_C 206 HAKA-----------------R-------GIDVVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAG-NAI--- 257 (328)
T ss_dssp HHHH-----------------H-------TCSEEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGT-THH---
T ss_pred HHHh-----------------c-------cchhhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHH-HHH---
Confidence 5310 0 1111 1111111 011123445568999998888888885554 222
Q ss_pred HHHHHHHHHHh--CCCeEEEEecC
Q 000984 559 KVVQEALDRIM--VNRTTVIVAHR 580 (1198)
Q Consensus 559 ~~i~~~i~~~~--~~~t~i~itH~ 580 (1198)
.+.++.+. .+.|.|++||-
T Consensus 258 ---~~~~~~~~~~~~it~iilTKl 278 (328)
T 3e70_C 258 ---VEQARQFNEAVKIDGIILTKL 278 (328)
T ss_dssp ---HHHHHHHHHHSCCCEEEEECG
T ss_pred ---HHHHHHHHHhcCCCEEEEeCc
Confidence 22222222 37899999994
|
| >4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis} | Back alignment and structure |
|---|
Probab=99.08 E-value=1.5e-11 Score=134.90 Aligned_cols=107 Identities=18% Similarity=0.192 Sum_probs=85.3
Q ss_pred cccccceEEeeCCCEEEEEcCCCCCHHHHHHHHh---cccCCCCCeEE--------ECCccc-CCCChHHHHhhcceecc
Q 000984 1059 QVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQ---RFYDPDAGHIT--------LDGVEI-QKLQLKWLRQQMGLVSQ 1126 (1198)
Q Consensus 1059 ~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~---R~ydp~~G~I~--------IDG~dI-~~i~l~~LR~~IsiV~Q 1126 (1198)
+++++.+ ++|++|||+|++||||||++++|. |++.|++|.|. .+|.++ ....+..+++++++++|
T Consensus 18 ~~~~~m~---~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d~g~i~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 94 (252)
T 4e22_A 18 LERPHMT---AIAPVITVDGPSGAGKGTLCKALAESLNWRLLDSGAIYRVLALAALHHQVDISTEEALVPLAAHLDVRFV 94 (252)
T ss_dssp -----CT---TTSCEEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHHHHHHHHHHHTTCCSSSSTTHHHHHHTCCEEEE
T ss_pred hhhhhcC---CCCcEEEEECCCCCCHHHHHHHHHHhcCCCcCCCCceehHhHHHHHHcCCCcccHHHHHHHHHcCCEEEe
Confidence 4555554 889999999999999999999999 99999999999 999999 56778999999999995
Q ss_pred c------cccccccHHHHHhcCCCCCCCHHHHHHHHHHcchHHHHHhcccccccee
Q 000984 1127 E------PVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQVRTSRL 1176 (1198)
Q Consensus 1127 d------p~LF~gTIreNI~~g~~~~~tdeei~~Al~~A~l~dfI~~LP~g~dt~v 1176 (1198)
+ .+++..++.+||+ .+++..++..+..++.|......+...+
T Consensus 95 ~~~~~~~~~l~~~~v~~~i~--------~~~v~~~~s~~~~~~~vr~~l~~~~~~~ 142 (252)
T 4e22_A 95 SQNGQLQVILEGEDVSNEIR--------TETVGNTASQAAAFPRVREALLRRQRAF 142 (252)
T ss_dssp EETTEEEEEETTEECTTGGG--------SHHHHHHHHHHTTSHHHHHHHHHHHHTT
T ss_pred cCCCCceEEECCeehhHHHH--------HHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 4 5688888888874 2467777888888888877666544433
|
| >2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A* | Back alignment and structure |
|---|
Probab=99.08 E-value=2.8e-12 Score=146.48 Aligned_cols=87 Identities=14% Similarity=0.168 Sum_probs=76.3
Q ss_pred EEEeeeeEECCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCC----hHHHH
Q 000984 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQ----LKWLR 1118 (1198)
Q Consensus 1043 I~f~nVsf~Y~~~~~~~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~~i~----l~~LR 1118 (1198)
|+.+|++++|. ...+|+++||++++|+.+||+|++|||||||++.|.+++.|++|+|.|.|.|+.... ....|
T Consensus 30 ie~~~~~~~~~---~~~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~~~~~~~~~~~~ 106 (337)
T 2qm8_A 30 AESRRADHRAA---VRDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDK 106 (337)
T ss_dssp HTCSSHHHHHH---HHHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCG
T ss_pred HeeCCcccccC---hHHHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCcccccccchHHHh
Confidence 56678888884 235999999999999999999999999999999999999999999999999986543 23468
Q ss_pred hhcceecccccccc
Q 000984 1119 QQMGLVSQEPVLFN 1132 (1198)
Q Consensus 1119 ~~IsiV~Qdp~LF~ 1132 (1198)
+++++++|++.+|.
T Consensus 107 ~~i~~v~q~~~~~~ 120 (337)
T 2qm8_A 107 TRMARLAIDRNAFI 120 (337)
T ss_dssp GGSTTGGGCTTEEE
T ss_pred hhheeeccCccccc
Confidence 89999999999985
|
| >2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.07 E-value=2.9e-11 Score=137.98 Aligned_cols=81 Identities=19% Similarity=0.276 Sum_probs=69.5
Q ss_pred ccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCC----hHHH--Hhhcceeccccc-cc-cc
Q 000984 1062 RDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQ----LKWL--RQQMGLVSQEPV-LF-ND 1133 (1198)
Q Consensus 1062 ~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~~i~----l~~L--R~~IsiV~Qdp~-LF-~g 1133 (1198)
+.+||++++|+.++|||++||||||+++.|.+++.|++|+|.++|.|+.... +..+ |.+|++|+|++. ++ ..
T Consensus 148 ~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~p~~ 227 (359)
T 2og2_A 148 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAAT 227 (359)
T ss_dssp CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCCHHH
T ss_pred CCcceecCCCeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccChhh
Confidence 4578899999999999999999999999999999999999999999987642 3334 568999999987 54 56
Q ss_pred cHHHHHhcC
Q 000984 1134 TIRANIAYG 1142 (1198)
Q Consensus 1134 TIreNI~~g 1142 (1198)
|+++||.++
T Consensus 228 tv~e~l~~~ 236 (359)
T 2og2_A 228 VLSKAVKRG 236 (359)
T ss_dssp HHHHHHHHH
T ss_pred hHHHHHHHH
Confidence 899999764
|
| >1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A* | Back alignment and structure |
|---|
Probab=99.06 E-value=1.1e-11 Score=140.12 Aligned_cols=93 Identities=23% Similarity=0.366 Sum_probs=79.2
Q ss_pred CcccEEEeeeeEECCCCCCccccccceEEe-------------------eCCCEEEEEcCCCCCHHHHHHHHhcccC--C
Q 000984 1039 VKGEIELHHVSFKYPSRPDVQVFRDLNLKI-------------------RAGKTVALVGESGSGKSTVVSLLQRFYD--P 1097 (1198)
Q Consensus 1039 ~~G~I~f~nVsf~Y~~~~~~~vL~~is~~I-------------------~~GekvaIVG~SGSGKSTL~~lL~R~yd--p 1097 (1198)
.++.|+++||++.|. +++++|++.+ ++|+.+||+|++|||||||+++|.+++. |
T Consensus 34 ~~~~i~~~~v~~~y~-----~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~ 108 (308)
T 1sq5_A 34 INEDLSLEEVAEIYL-----PLSRLLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQALLSRWP 108 (308)
T ss_dssp HCTTCCHHHHHHTHH-----HHHHHHHHHHHHHHHHHHHHHHHHTCC-CCCCEEEEEEECTTSSHHHHHHHHHHHHTTST
T ss_pred CccccchHhHHHHHH-----HHHHHHHHHHhhhhhHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHHhhCC
Confidence 356799999999993 5999999998 8999999999999999999999999999 9
Q ss_pred CCCeEEE---CCcccCCCChHHHHhhcceeccccccc-cccHHHHHhc
Q 000984 1098 DAGHITL---DGVEIQKLQLKWLRQQMGLVSQEPVLF-NDTIRANIAY 1141 (1198)
Q Consensus 1098 ~~G~I~I---DG~dI~~i~l~~LR~~IsiV~Qdp~LF-~gTIreNI~~ 1141 (1198)
++|+|.+ ||.+.. ...|+.+++| |+.-++ .-|+.+|+.+
T Consensus 109 ~~G~i~vi~~d~~~~~----~~~~~~~~~v-q~~~~~~~~~~~~~~~~ 151 (308)
T 1sq5_A 109 EHRRVELITTDGFLHP----NQVLKERGLM-KKKGFPESYDMHRLVKF 151 (308)
T ss_dssp TCCCEEEEEGGGGBCC----HHHHHHHTCT-TCTTSGGGBCHHHHHHH
T ss_pred CCCeEEEEecCCccCc----HHHHHhCCEe-ecCCCCCCccHHHHHHH
Confidence 9999999 998853 3467889999 766553 4478888764
|
| >2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A | Back alignment and structure |
|---|
Probab=99.06 E-value=3.8e-11 Score=140.54 Aligned_cols=81 Identities=21% Similarity=0.288 Sum_probs=69.9
Q ss_pred ccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCC----hHH--HHhhcceeccccccc-ccc
Q 000984 1062 RDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQ----LKW--LRQQMGLVSQEPVLF-NDT 1134 (1198)
Q Consensus 1062 ~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~~i~----l~~--LR~~IsiV~Qdp~LF-~gT 1134 (1198)
+++||++++|+.++|||++||||||+++.|.+++.+++|+|.++|.|+.... +.. .|++|++|+|++.++ ..|
T Consensus 284 ~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~p~~t 363 (503)
T 2yhs_A 284 EPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASV 363 (503)
T ss_dssp CCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCCHHHH
T ss_pred CCceeeccCCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcCHHHH
Confidence 5788999999999999999999999999999999999999999998875431 223 478899999998754 679
Q ss_pred HHHHHhcC
Q 000984 1135 IRANIAYG 1142 (1198)
Q Consensus 1135 IreNI~~g 1142 (1198)
+++||.++
T Consensus 364 V~e~l~~a 371 (503)
T 2yhs_A 364 IFDAIQAA 371 (503)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99999864
|
| >1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A | Back alignment and structure |
|---|
Probab=99.04 E-value=1.7e-11 Score=130.50 Aligned_cols=116 Identities=19% Similarity=0.228 Sum_probs=67.7
Q ss_pred ccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHhhcceeccccccccc-cHH
Q 000984 1058 VQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFND-TIR 1136 (1198)
Q Consensus 1058 ~~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~~i~l~~LR~~IsiV~Qdp~LF~g-TIr 1136 (1198)
.+||+| .+|++||.+||+||||||||||+++|.++++ .|.+++.....-+....|+.+++++|++.+|.. |++
T Consensus 9 ~~~~~~--~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~----~i~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~ 82 (207)
T 1znw_A 9 KPTARG--QPAAVGRVVVLSGPSAVGKSTVVRCLRERIP----NLHFSVSATTRAPRPGEVDGVDYHFIDPTRFQQLIDQ 82 (207)
T ss_dssp ------------CCCEEEEECSTTSSHHHHHHHHHHHST----TCEECCCEESSCCCTTCCBTTTBEECCHHHHHHHHHT
T ss_pred CcCCCC--CCCCCCCEEEEECCCCCCHHHHHHHHHhhCC----ceEEcccccccCCcccccCCCeeEecCHHHHHHHHhc
Confidence 368999 7999999999999999999999999999985 455654222111112346789999999988753 455
Q ss_pred HHHhc-----C--CCCCCCHHHHHHH----------HHHcchHHHHHhccccccceeeeeecc
Q 000984 1137 ANIAY-----G--KGGDATEAEIQAA----------SEMANAHKFICSLQQVRTSRLLLVMIP 1182 (1198)
Q Consensus 1137 eNI~~-----g--~~~~~tdeei~~A----------l~~A~l~dfI~~LP~g~dt~v~~~~~~ 1182 (1198)
+|+.. + .....+.+++.+. ++..++.++-...|..+- ++++-|
T Consensus 83 ~~l~~~~~~~~n~~~~g~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~lS---~l~~~p 142 (207)
T 1znw_A 83 GELLEWAEIHGGLHRSGTLAQPVRAAAATGVPVLIEVDLAGARAIKKTMPEAVT---VFLAPP 142 (207)
T ss_dssp TCEEEEEEEGGGTEEEEEEHHHHHHHHHHTCCEEEECCHHHHHHHHHHCTTSEE---EEEECS
T ss_pred CCceeehhhcCchhhcCCcHHHHHHHHHcCCeEEEEeCHHHHHHHHHhcCCcEE---EEEECC
Confidence 55421 1 0001233444443 345577777777776553 555544
|
| >1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=99.00 E-value=7.9e-11 Score=132.60 Aligned_cols=106 Identities=16% Similarity=0.142 Sum_probs=73.0
Q ss_pred EEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEE---CCcccCCCChHHHHhhcceeccccc-------------
Q 000984 1066 LKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITL---DGVEIQKLQLKWLRQQMGLVSQEPV------------- 1129 (1198)
Q Consensus 1066 ~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~I---DG~dI~~i~l~~LR~~IsiV~Qdp~------------- 1129 (1198)
|++.+|+.++|+||||||||||+++|.++..|++|+|.+ +|.++........++++++|+|+|-
T Consensus 164 f~~l~geiv~l~G~sG~GKSTll~~l~g~~~~~~G~i~~~~~~g~~~t~~~~~~~~~~~g~v~q~p~~~~~~~~~~~~~~ 243 (301)
T 1u0l_A 164 KEYLKGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGFANLEINDIEPEE 243 (301)
T ss_dssp HHHHSSSEEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCCEEECTTSCEEESSCSSTTCCCCSSCHHH
T ss_pred HHHhcCCeEEEECCCCCcHHHHHHHhcccccccccceecccCCCCCceeeeEEEEcCCCCEEEECcCCCccCCCcCCHHH
Confidence 456789999999999999999999999999999999999 9999876542221247999999985
Q ss_pred ---cc-cccHHHHHhcCCCC--CCCHHHHHHHHHHcch-HHHHHhccccc
Q 000984 1130 ---LF-NDTIRANIAYGKGG--DATEAEIQAASEMANA-HKFICSLQQVR 1172 (1198)
Q Consensus 1130 ---LF-~gTIreNI~~g~~~--~~tdeei~~Al~~A~l-~dfI~~LP~g~ 1172 (1198)
|| +-|+ +|++|+... ...++.+.++++..++ .+...+.|..+
T Consensus 244 ~~~l~~~~~~-~n~~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~~~~~l 292 (301)
T 1u0l_A 244 LKHYFKEFGD-KQCFFSDCNHVDEPECGVKEAVENGEIAESRYENYVKMF 292 (301)
T ss_dssp HGGGSTTSSS-CCCSSTTCCSSSCSSCHHHHHHHHTSSCHHHHHHHHHHH
T ss_pred HHHHHHhccc-ccCcCCCCcCCCCCCcHHHHHHHcCCCCHHHHHHHHHHH
Confidence 34 3377 999885221 1234579999999999 47777777654
|
| >3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A* | Back alignment and structure |
|---|
Probab=98.99 E-value=2.2e-10 Score=118.83 Aligned_cols=111 Identities=17% Similarity=0.197 Sum_probs=74.1
Q ss_pred eEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcceEEEcCCCCCCcccHHHHHhcCCC
Q 000984 406 SISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKD 485 (1198)
Q Consensus 406 ~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~Ni~~~~~ 485 (1198)
++.+++|+.++|+||+|||||||++++.+.+.|..|.. +.|+ +..+.+
T Consensus 32 ~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~------------------~~~~---------~~~~~~----- 79 (180)
T 3ec2_A 32 NFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIR------------------GYFF---------DTKDLI----- 79 (180)
T ss_dssp SCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCC------------------CCEE---------EHHHHH-----
T ss_pred hccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCe------------------EEEE---------EHHHHH-----
Confidence 46678899999999999999999999999987666631 1111 111111
Q ss_pred CCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhhccCCCEEEEeCCCC-CCCHHhHHHHHHH
Q 000984 486 DATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATS-ALDAESEKVVQEA 564 (1198)
Q Consensus 486 ~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal~~~~~illlDe~ts-~lD~~~~~~i~~~ 564 (1198)
.... ..... + . .. -....+.+|++|+||||++ ++|+.....+.+.
T Consensus 80 --------~~~~-----~~~~~---~--------~--~~--------~~~~~~~~~~llilDE~~~~~~~~~~~~~l~~l 125 (180)
T 3ec2_A 80 --------FRLK-----HLMDE---G--------K--DT--------KFLKTVLNSPVLVLDDLGSERLSDWQRELISYI 125 (180)
T ss_dssp --------HHHH-----HHHHH---T--------C--CS--------HHHHHHHTCSEEEEETCSSSCCCHHHHHHHHHH
T ss_pred --------HHHH-----HHhcC---c--------h--HH--------HHHHHhcCCCEEEEeCCCCCcCCHHHHHHHHHH
Confidence 1000 00000 0 0 00 0112245899999999996 8999988888888
Q ss_pred HHHHh-CCCeEEEEecCcc
Q 000984 565 LDRIM-VNRTTVIVAHRLS 582 (1198)
Q Consensus 565 i~~~~-~~~t~i~itH~~~ 582 (1198)
+.... +++++|++||...
T Consensus 126 l~~~~~~~~~ii~tsn~~~ 144 (180)
T 3ec2_A 126 ITYRYNNLKSTIITTNYSL 144 (180)
T ss_dssp HHHHHHTTCEEEEECCCCS
T ss_pred HHHHHHcCCCEEEEcCCCh
Confidence 87665 6789999999864
|
| >2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A* | Back alignment and structure |
|---|
Probab=98.99 E-value=1e-10 Score=127.79 Aligned_cols=71 Identities=17% Similarity=0.136 Sum_probs=51.0
Q ss_pred CccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHhhcceeccccccccccHH
Q 000984 1057 DVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIR 1136 (1198)
Q Consensus 1057 ~~~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~~i~l~~LR~~IsiV~Qdp~LF~gTIr 1136 (1198)
+.++|+|+||++++|+.+||+||+||||||++++|.+++ |.+.+| ..++++++|+||++...-|.+
T Consensus 11 ~~~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~l----G~~~~~----------~~~~~i~~v~~d~~~~~l~~~ 76 (245)
T 2jeo_A 11 VDLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELL----GQNEVE----------QRQRKVVILSQDRFYKVLTAE 76 (245)
T ss_dssp ------------CCSEEEEEECSTTSSHHHHHHHHHHHH----TGGGSC----------GGGCSEEEEEGGGGBCCCCHH
T ss_pred CceeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHh----chhccc----------ccCCceEEEeCCcCccccCHh
Confidence 446999999999999999999999999999999999977 777665 367889999999855456899
Q ss_pred HHHhc
Q 000984 1137 ANIAY 1141 (1198)
Q Consensus 1137 eNI~~ 1141 (1198)
+|+++
T Consensus 77 ~~~~~ 81 (245)
T 2jeo_A 77 QKAKA 81 (245)
T ss_dssp HHHHH
T ss_pred Hhhhh
Confidence 99864
|
| >1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A* | Back alignment and structure |
|---|
Probab=98.97 E-value=1.1e-11 Score=140.13 Aligned_cols=140 Identities=18% Similarity=0.204 Sum_probs=96.9
Q ss_pred cccEEEEeEEEEcCCCCCCccccceeEEE-------------------eCCCEEEEEcCCCCcHHHHHHHHhccCC--CC
Q 000984 381 RGDIELRDVYFSYPARPNEQIFSGFSISI-------------------SSGTTAALVGQSGSGKSTVISLIERFYD--PQ 439 (1198)
Q Consensus 381 ~g~i~~~~v~~~y~~~~~~~~l~~i~l~i-------------------~~g~~~~ivG~~GsGKStl~~~l~g~~~--~~ 439 (1198)
.+.|+++||++.|. ++++++++.+ ++|+++||+|++|||||||+++|.|++. |+
T Consensus 35 ~~~i~~~~v~~~y~-----~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~ 109 (308)
T 1sq5_A 35 NEDLSLEEVAEIYL-----PLSRLLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQALLSRWPE 109 (308)
T ss_dssp CTTCCHHHHHHTHH-----HHHHHHHHHHHHHHHHHHHHHHHHTCC-CCCCEEEEEEECTTSSHHHHHHHHHHHHTTSTT
T ss_pred ccccchHhHHHHHH-----HHHHHHHHHHhhhhhHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHHhhCCC
Confidence 35689999999992 5899999988 8999999999999999999999999998 99
Q ss_pred CCeEEE---CCeecCCcCHHHHhcceEEEcCCCCCC-cccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccch
Q 000984 440 AGEVLI---DGINLKEFQLQWIRKKIGLVSQEPVLF-TGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTL 515 (1198)
Q Consensus 440 ~G~i~i---~g~~~~~~~~~~~r~~i~~v~Q~~~l~-~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~ 515 (1198)
+|+|.+ ||.+.. ...++.++++ |+..++ .-|+.+|+.+.. .+..|.. .
T Consensus 110 ~G~i~vi~~d~~~~~----~~~~~~~~~v-q~~~~~~~~~~~~~~~~~~----------------------~l~~~~~-~ 161 (308)
T 1sq5_A 110 HRRVELITTDGFLHP----NQVLKERGLM-KKKGFPESYDMHRLVKFVS----------------------DLKSGVP-N 161 (308)
T ss_dssp CCCEEEEEGGGGBCC----HHHHHHHTCT-TCTTSGGGBCHHHHHHHHH----------------------HHTTTCS-C
T ss_pred CCeEEEEecCCccCc----HHHHHhCCEe-ecCCCCCCccHHHHHHHHH----------------------HHhCCCC-c
Confidence 999999 987642 2345678888 766543 346766665321 0111111 0
Q ss_pred hcCCCCCCChHHHHHHhHHHhhccCCCEEEEeCCCCCCCH
Q 000984 516 VGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDA 555 (1198)
Q Consensus 516 v~~~g~~lSgGqkqri~lARal~~~~~illlDe~ts~lD~ 555 (1198)
+.-.-.+.+.+ +|+..+.+...+++++|+|.|....|.
T Consensus 162 i~~P~~~~~~~--~~~~~~~~~~~~~~ivIlEG~~l~~~~ 199 (308)
T 1sq5_A 162 VTAPVYSHLIY--DVIPDGDKTVVQPDILILEGLNVLQSG 199 (308)
T ss_dssp EEECCEETTTT--EECTTCCEEEC-CCEEEEECTTTTCCG
T ss_pred eeccccccccc--CcccccceecCCCCEEEECchhhCCCc
Confidence 10001112222 344444456678999999999987774
|
| >2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.96 E-value=1.5e-12 Score=144.61 Aligned_cols=130 Identities=16% Similarity=0.162 Sum_probs=94.8
Q ss_pred CccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcceEEEcCCC-CCC-cccH
Q 000984 399 EQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEP-VLF-TGSI 476 (1198)
Q Consensus 399 ~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~-~l~-~~ti 476 (1198)
+.+++++++++++| ++|+||+|||||||+++|.|++.+ |.|.++|.++.+......++++++++|++ ..+ .-++
T Consensus 33 ~~~l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~~~--~~i~i~g~~l~~~~~~~~~~~i~~vf~~a~~~~p~i~~ 108 (274)
T 2x8a_A 33 PDQFKALGLVTPAG--VLLAGPPGCGKTLLAKAVANESGL--NFISVKGPELLNMYVGESERAVRQVFQRAKNSAPCVIF 108 (274)
T ss_dssp HHHHHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHHTTC--EEEEEETTTTCSSTTHHHHHHHHHHHHHHHHTCSEEEE
T ss_pred HHHHHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHHcCC--CEEEEEcHHHHhhhhhHHHHHHHHHHHHHHhcCCCeEe
Confidence 34789999999999 999999999999999999999877 79999998887666666677899999986 333 3466
Q ss_pred HHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhhccCCCEEEEeCCCC
Q 000984 477 KDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATS 551 (1198)
Q Consensus 477 ~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal~~~~~illlDe~ts 551 (1198)
.||+....+.....+.. . ....+.+....|||||+||..+++|+..+|++| |||+.
T Consensus 109 ~Deid~~~~~r~~~~~~-------------~----~~~~~~~~l~~Lsgg~~~~~~i~ia~tn~p~~L--D~al~ 164 (274)
T 2x8a_A 109 FDEVDALCPRRSDRETG-------------A----SVRVVNQLLTEMDGLEARQQVFIMAATNRPDII--DPAIL 164 (274)
T ss_dssp EETCTTTCC--------------------------CTTHHHHHHHHHHTCCSTTCEEEEEEESCGGGS--CHHHH
T ss_pred eehhhhhhcccCCCcch-------------H----HHHHHHHHHHhhhcccccCCEEEEeecCChhhC--CHhhc
Confidence 77877543321111000 0 001111122358999999999999999999975 99875
|
| >2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=98.95 E-value=4.6e-11 Score=134.43 Aligned_cols=115 Identities=17% Similarity=0.077 Sum_probs=74.2
Q ss_pred EEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEE---CCeecCCcCHHHHh-cceEEEcCCCCCC------cccHH
Q 000984 408 SISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLI---DGINLKEFQLQWIR-KKIGLVSQEPVLF------TGSIK 477 (1198)
Q Consensus 408 ~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i---~g~~~~~~~~~~~r-~~i~~v~Q~~~l~------~~ti~ 477 (1198)
.+.+|++++++||||||||||+++|. +.+|..|+|.+ +|.++..... ..+ ..++|++|+|.+. .-|+
T Consensus 161 ~~l~G~i~~l~G~sG~GKSTLln~l~-~~~~~~G~i~~~~~~G~~~t~~~~-~~~~~~~g~v~d~pg~~~~~l~~~lt~- 237 (302)
T 2yv5_A 161 DYLEGFICILAGPSGVGKSSILSRLT-GEELRTQEVSEKTERGRHTTTGVR-LIPFGKGSFVGDTPGFSKVEATMFVKP- 237 (302)
T ss_dssp HHTTTCEEEEECSTTSSHHHHHHHHH-SCCCCCSCC---------CCCCEE-EEEETTTEEEESSCCCSSCCGGGTSCG-
T ss_pred hhccCcEEEEECCCCCCHHHHHHHHH-HhhCcccccccccCCCCCceeeEE-EEEcCCCcEEEECcCcCcCcccccCCH-
Confidence 45579999999999999999999999 99999999999 9988765432 222 3699999999653 4578
Q ss_pred HHH--hcC--------CCC-----CCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHH
Q 000984 478 DNI--AYG--------KDD-----ATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIAR 535 (1198)
Q Consensus 478 ~Ni--~~~--------~~~-----~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lAR 535 (1198)
+|+ .|+ ... .....+.++++..++.+. ........|||.+++++.|||
T Consensus 238 e~l~~~f~~~~~~~c~~~~~~~~~e~~~~v~~~l~~~~L~~~----------~~~~~~~~ls~~~~R~~~~~~ 300 (302)
T 2yv5_A 238 REVRNYFREFLRYQCKYPDCTHTNEPGCAVKEAVKNGEISCE----------RYKSYLKIIKVYLEEIKELCR 300 (302)
T ss_dssp GGGGGGCGGGHHHHHHSTTCCSSSCTTCHHHHHHHTTSSCHH----------HHHHHHHHTTCCCTTHHHHSS
T ss_pred HHHHHHHHHHHHccCCCCCCCCCCCCCCHHHHHHHcCCCCHH----------HHHHHHHHHHHHHHHHHHHhc
Confidence 888 443 000 112334444444443221 222223468998888999998
|
| >1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D* | Back alignment and structure |
|---|
Probab=98.95 E-value=4.8e-10 Score=125.69 Aligned_cols=72 Identities=18% Similarity=0.249 Sum_probs=62.2
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCC----hHHH--Hhhcceecccccccc-ccHHHHHhc
Q 000984 1070 AGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQ----LKWL--RQQMGLVSQEPVLFN-DTIRANIAY 1141 (1198)
Q Consensus 1070 ~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~~i~----l~~L--R~~IsiV~Qdp~LF~-gTIreNI~~ 1141 (1198)
+|+.++|||||||||||+++.|.+++.|++|+|.++|.|+.... +..+ |.++++|+|++.++. .|+++|+.+
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v~~ 179 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAVQA 179 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHH
Confidence 68999999999999999999999999999999999999997654 2333 467999999998775 478899864
|
| >3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B | Back alignment and structure |
|---|
Probab=98.91 E-value=5.4e-11 Score=146.57 Aligned_cols=96 Identities=18% Similarity=0.248 Sum_probs=60.1
Q ss_pred cEEEeeeeEECCCCCCccccccc----------eEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCC-CCCeEEECCcccC
Q 000984 1042 EIELHHVSFKYPSRPDVQVFRDL----------NLKIRAGKTVALVGESGSGKSTVVSLLQRFYDP-DAGHITLDGVEIQ 1110 (1198)
Q Consensus 1042 ~I~f~nVsf~Y~~~~~~~vL~~i----------s~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp-~~G~I~IDG~dI~ 1110 (1198)
.|+++|+++.|+.. ..++|+.+ +++++. +||||++|||||||+++|.|++.| ++|.|.++|.++.
T Consensus 10 ~i~~~~l~~~~~~~-~r~ll~~id~l~~~gv~~~l~lp~---iaIvG~nGsGKSTLL~~I~Gl~~P~~sG~vt~~g~~i~ 85 (608)
T 3szr_A 10 SVAENNLCSQYEEK-VRPCIDLIDSLRALGVEQDLALPA---IAVIGDQSSGKSSVLEALSGVALPRGSGIVTRCPLVLK 85 (608)
T ss_dssp ----------CHHH-HHHHHHHHHHHHHHSCCSSCCCCC---EECCCCTTSCHHHHHHHHHSCC-------CCCSCEEEE
T ss_pred hhhhhhhhHHHHHH-HHHHHHHHHHHHhCCCCCcccCCe---EEEECCCCChHHHHHHHHhCCCCCCCCCeEEEcCEEEE
Confidence 48999999999632 22455544 377765 999999999999999999999989 7999999999963
Q ss_pred CC---ChHHHHhhcceeccccccc-cccHHHHHhc
Q 000984 1111 KL---QLKWLRQQMGLVSQEPVLF-NDTIRANIAY 1141 (1198)
Q Consensus 1111 ~i---~l~~LR~~IsiV~Qdp~LF-~gTIreNI~~ 1141 (1198)
.. ....+|++|++|+|++.+| ..|+++||.+
T Consensus 86 ~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~i~~ 120 (608)
T 3szr_A 86 LKKLVNEDKWRGKVSYQDYEIEISDASEVEKEINK 120 (608)
T ss_dssp EEECSSSSCCEEEESCC---CCCCCHHHHHTTHHH
T ss_pred EecCCccccceeEEeeecccccCCCHHHHHHHHHH
Confidence 22 2457889999999999876 4589999864
|
| >3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A* | Back alignment and structure |
|---|
Probab=98.90 E-value=4.7e-10 Score=132.23 Aligned_cols=80 Identities=16% Similarity=0.168 Sum_probs=64.7
Q ss_pred EEeeeeEECCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHH-------
Q 000984 1044 ELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKW------- 1116 (1198)
Q Consensus 1044 ~f~nVsf~Y~~~~~~~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~~i~l~~------- 1116 (1198)
.+.++++.+ ..+|+|+||+|++ |.+||+||||||||||+++|.|+++|++|+|.++|.++...+...
T Consensus 8 ~l~~l~~~~-----~~~l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~r~~~~~~ 81 (483)
T 3euj_A 8 KFRSLTLIN-----WNGFFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALIPDLTLLNFRNTTEAGSTSSSRDKGLYG 81 (483)
T ss_dssp EEEEEEEEE-----ETTEEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHHCCCTTTCCCCCTTSCSCCCCSSCCSCGG
T ss_pred ceeEEEEec-----cccccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEEcccCchhHHhHHHHH
Confidence 455665533 1389999999999 999999999999999999999999999999999999998765432
Q ss_pred -HHhhcceeccccc
Q 000984 1117 -LRQQMGLVSQEPV 1129 (1198)
Q Consensus 1117 -LR~~IsiV~Qdp~ 1129 (1198)
++..+.++.+++.
T Consensus 82 ~~~~~~~~~~~~~~ 95 (483)
T 3euj_A 82 KLKAGVCYAVLETV 95 (483)
T ss_dssp GSCSSEEEEEEEEE
T ss_pred hcCCCceEEEEehh
Confidence 2334567777754
|
| >3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum} | Back alignment and structure |
|---|
Probab=98.85 E-value=6.9e-12 Score=135.96 Aligned_cols=37 Identities=30% Similarity=0.227 Sum_probs=22.9
Q ss_pred ccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHh-ccC
Q 000984 400 QIFSGFSISISSGTTAALVGQSGSGKSTVISLIE-RFY 436 (1198)
Q Consensus 400 ~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~-g~~ 436 (1198)
...+++||++++|++++|+||||||||||+++|. |++
T Consensus 15 ~~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 15 QTQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp -------CCEECCCEEEEECSCC----CHHHHHHC---
T ss_pred cccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 4678999999999999999999999999999999 998
|
| >3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A* | Back alignment and structure |
|---|
Probab=98.84 E-value=5.9e-10 Score=118.77 Aligned_cols=79 Identities=11% Similarity=0.079 Sum_probs=60.2
Q ss_pred EeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHhhcceeccccccccc---cHHHHHhc--
Q 000984 1067 KIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFND---TIRANIAY-- 1141 (1198)
Q Consensus 1067 ~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~~i~l~~LR~~IsiV~Qdp~LF~g---TIreNI~~-- 1141 (1198)
..++|+.+||+|++|||||||+++|.+++.| ++++|+||+++|+. |+++|+.+
T Consensus 2 ~~~~~~~i~i~G~~GsGKSTl~~~l~~~~~~----------------------~i~~v~~d~~~~~~~~~~~~~~~~~~~ 59 (211)
T 3asz_A 2 SAPKPFVIGIAGGTASGKTTLAQALARTLGE----------------------RVALLPMDHYYKDLGHLPLEERLRVNY 59 (211)
T ss_dssp ---CCEEEEEEESTTSSHHHHHHHHHHHHGG----------------------GEEEEEGGGCBCCCTTSCHHHHHHSCT
T ss_pred CCCCcEEEEEECCCCCCHHHHHHHHHHHhCC----------------------CeEEEecCccccCcccccHHHhcCCCC
Confidence 3579999999999999999999999999875 68999999999854 56666554
Q ss_pred CCCCCCCHHHHHHHHHHcchHHHHHh
Q 000984 1142 GKGGDATEAEIQAASEMANAHKFICS 1167 (1198)
Q Consensus 1142 g~~~~~tdeei~~Al~~A~l~dfI~~ 1167 (1198)
+.+.....+.+.++++..++.+++..
T Consensus 60 ~~~~~~~~~~~~~~l~~~~~~~~~~~ 85 (211)
T 3asz_A 60 DHPDAFDLALYLEHAQALLRGLPVEM 85 (211)
T ss_dssp TSGGGBCHHHHHHHHHHHHTTCCEEE
T ss_pred CChhhhhHHHHHHHHHHHHcCCCcCC
Confidence 32223456778888888877766544
|
| >3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0 | Back alignment and structure |
|---|
Probab=98.84 E-value=9.2e-10 Score=114.46 Aligned_cols=81 Identities=21% Similarity=0.334 Sum_probs=68.1
Q ss_pred EeeCCCEEEEEcCCCCCHHHHHHHHhcccC-------------CCCCeEEECCcccCCCChHHHHhhcceeccccccccc
Q 000984 1067 KIRAGKTVALVGESGSGKSTVVSLLQRFYD-------------PDAGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFND 1133 (1198)
Q Consensus 1067 ~I~~GekvaIVG~SGSGKSTL~~lL~R~yd-------------p~~G~I~IDG~dI~~i~l~~LR~~IsiV~Qdp~LF~g 1133 (1198)
...+|+.++|+||||||||||+++|.+.++ |..|+ +||+|..-++.+.+++.+ .|+.+|+.+
T Consensus 15 ~~~~g~~ivl~GPSGaGKsTL~~~L~~~~~~~~~~~vs~TTR~p~~gE--~~G~~y~fvs~~~f~~~i---~~~~fle~~ 89 (197)
T 3ney_A 15 YFQGRKTLVLIGASGVGRSHIKNALLSQNPEKFVYPVPYTTRPPRKSE--EDGKEYHFISTEEMTRNI---SANEFLEFG 89 (197)
T ss_dssp -CCSCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCCCTTC--CTTSSCEECCHHHHHHHH---HTTCEEEEE
T ss_pred CCCCCCEEEEECcCCCCHHHHHHHHHhhCCccEEeeecccccCCcCCe--eccccceeccHHHhhhhh---hhhhhhhhh
Confidence 345899999999999999999999999986 67887 899999999999999876 699999999
Q ss_pred cHHHHHhcCCCCCCCHHHHHHHHH
Q 000984 1134 TIRANIAYGKGGDATEAEIQAASE 1157 (1198)
Q Consensus 1134 TIreNI~~g~~~~~tdeei~~Al~ 1157 (1198)
++.+|. ||. +.+.+.++++
T Consensus 90 ~~~~n~-YGt----~~~~v~~~l~ 108 (197)
T 3ney_A 90 SYQGNM-FGT----KFETVHQIHK 108 (197)
T ss_dssp EETTEE-EEE----EHHHHHHHHH
T ss_pred hhhcee-ccc----chhhHHHHHh
Confidence 999995 883 3444555444
|
| >2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=98.84 E-value=8.5e-10 Score=124.09 Aligned_cols=102 Identities=15% Similarity=0.136 Sum_probs=70.7
Q ss_pred EeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEE---CCcccCCCChHHHH-hhcceecccccc------ccccHH
Q 000984 1067 KIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITL---DGVEIQKLQLKWLR-QQMGLVSQEPVL------FNDTIR 1136 (1198)
Q Consensus 1067 ~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~I---DG~dI~~i~l~~LR-~~IsiV~Qdp~L------F~gTIr 1136 (1198)
++.+|++++|+|+||||||||+++|. +..|.+|+|.+ +|.++..... ..+ +++++|+|+|-+ .+-|+
T Consensus 161 ~~l~G~i~~l~G~sG~GKSTLln~l~-~~~~~~G~i~~~~~~G~~~t~~~~-~~~~~~~g~v~d~pg~~~~~l~~~lt~- 237 (302)
T 2yv5_A 161 DYLEGFICILAGPSGVGKSSILSRLT-GEELRTQEVSEKTERGRHTTTGVR-LIPFGKGSFVGDTPGFSKVEATMFVKP- 237 (302)
T ss_dssp HHTTTCEEEEECSTTSSHHHHHHHHH-SCCCCCSCC---------CCCCEE-EEEETTTEEEESSCCCSSCCGGGTSCG-
T ss_pred hhccCcEEEEECCCCCCHHHHHHHHH-HhhCcccccccccCCCCCceeeEE-EEEcCCCcEEEECcCcCcCcccccCCH-
Confidence 45579999999999999999999999 99999999999 9999876542 223 479999999954 24578
Q ss_pred HHH--hcC----------C--CCCCCHHHHHHHHHHcchHH-HHHhcccc
Q 000984 1137 ANI--AYG----------K--GGDATEAEIQAASEMANAHK-FICSLQQV 1171 (1198)
Q Consensus 1137 eNI--~~g----------~--~~~~tdeei~~Al~~A~l~d-fI~~LP~g 1171 (1198)
+|+ .++ . ......+.+.+|++..++.+ ...+.|.-
T Consensus 238 e~l~~~f~~~~~~~c~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~~~~~ 287 (302)
T 2yv5_A 238 REVRNYFREFLRYQCKYPDCTHTNEPGCAVKEAVKNGEISCERYKSYLKI 287 (302)
T ss_dssp GGGGGGCGGGHHHHHHSTTCCSSSCTTCHHHHHHHTTSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCCCCCCCCCCCCCCHHHHHHHcCCCCHHHHHHHHHH
Confidence 888 443 0 11122456899999998875 55554443
|
| >1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1 | Back alignment and structure |
|---|
Probab=98.83 E-value=6.9e-10 Score=129.33 Aligned_cols=153 Identities=18% Similarity=0.176 Sum_probs=90.0
Q ss_pred ccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcceEEEcCCCCCCcccHHHHHh
Q 000984 402 FSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIA 481 (1198)
Q Consensus 402 l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~Ni~ 481 (1198)
-++++|+++.|+.++|+|++|||||||+++|.+..+ .+.+.+...+ ...++++.|+.. ..-++.|+.-
T Consensus 147 ~~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~~------~i~~~~ftTl-----~p~~G~V~~~~~-~~~~l~DtpG 214 (416)
T 1udx_A 147 KRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAHP------KIAPYPFTTL-----SPNLGVVEVSEE-ERFTLADIPG 214 (416)
T ss_dssp EEEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSCC------EECCCTTCSS-----CCEEEEEECSSS-CEEEEEECCC
T ss_pred EeeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCCc------cccCccccee-----cceeeEEEecCc-ceEEEEeccc
Confidence 478999999999999999999999999999999743 3344333322 335677776541 1112222211
Q ss_pred cCC-----CCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhhccCCCEEEEeCCCCCCCHH
Q 000984 482 YGK-----DDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAE 556 (1198)
Q Consensus 482 ~~~-----~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal~~~~~illlDe~ts~lD~~ 556 (1198)
+.. ........ +..+.+. ..+..+ +.. .+...+||+||+||.++||++..+|.++++ +.+|..
T Consensus 215 li~~a~~~~~L~~~fl-~~~era~--~lL~vv----Dls-~~~~~~ls~g~~el~~la~aL~~~P~ILVl----NKlDl~ 282 (416)
T 1udx_A 215 IIEGASEGKGLGLEFL-RHIARTR--VLLYVL----DAA-DEPLKTLETLRKEVGAYDPALLRRPSLVAL----NKVDLL 282 (416)
T ss_dssp CCCCGGGSCCSCHHHH-HHHTSSS--EEEEEE----ETT-SCHHHHHHHHHHHHHHHCHHHHHSCEEEEE----ECCTTS
T ss_pred cccchhhhhhhhHHHH-HHHHHHH--hhhEEe----CCc-cCCHHHHHHHHHHHHHHhHHhhcCCEEEEE----ECCChh
Confidence 100 00111111 1111110 001000 100 122246999999999999999999999999 999987
Q ss_pred hHHHHHHHHHHHh--CCCeEEEEec
Q 000984 557 SEKVVQEALDRIM--VNRTTVIVAH 579 (1198)
Q Consensus 557 ~~~~i~~~i~~~~--~~~t~i~itH 579 (1198)
....+ +.+.+.. .+.+++.+|.
T Consensus 283 ~~~~~-~~l~~~l~~~g~~vi~iSA 306 (416)
T 1udx_A 283 EEEAV-KALADALAREGLAVLPVSA 306 (416)
T ss_dssp CHHHH-HHHHHHHHTTTSCEEECCT
T ss_pred hHHHH-HHHHHHHHhcCCeEEEEEC
Confidence 65333 3333332 2457776664
|
| >1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A* | Back alignment and structure |
|---|
Probab=98.82 E-value=3.4e-10 Score=122.14 Aligned_cols=97 Identities=19% Similarity=0.223 Sum_probs=82.2
Q ss_pred CCEEEEEcCCCCCHHHHHHHHhccc---CCCCCeEEE--------CCcccC-CCChHHHHhhcceecccc------cccc
Q 000984 1071 GKTVALVGESGSGKSTVVSLLQRFY---DPDAGHITL--------DGVEIQ-KLQLKWLRQQMGLVSQEP------VLFN 1132 (1198)
Q Consensus 1071 GekvaIVG~SGSGKSTL~~lL~R~y---dp~~G~I~I--------DG~dI~-~i~l~~LR~~IsiV~Qdp------~LF~ 1132 (1198)
+.++||+|++||||||++++|.+.| .++.|.|.. +|.|+. +..+.++++++++++|++ .++.
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 84 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYRVLALAALHHHVDVASEDALVPLASHLDVRFVSTNGNLEVILEG 84 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHTCCEEEEEETTEEEEEETT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcceeehhhHHHHHcCCCccCHHHHHHHHHhCceeeeccCCCceEEECC
Confidence 5789999999999999999999887 778999988 788876 367788999999999987 6677
Q ss_pred ccHHHHHhcCCCCCCCHHHHHHHHHHcchHHHHHhccccccce
Q 000984 1133 DTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQVRTSR 1175 (1198)
Q Consensus 1133 gTIreNI~~g~~~~~tdeei~~Al~~A~l~dfI~~LP~g~dt~ 1175 (1198)
.++.+|+ .++++..++..+.+|++|...+.++.+.
T Consensus 85 ~~v~~~~--------~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 119 (227)
T 1cke_A 85 EDVSGEI--------RTQEVANAASQVAAFPRVREALLRRQRA 119 (227)
T ss_dssp EECHHHH--------TSHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred eeCchhh--------CCHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 7788876 2568999999999999999887766443
|
| >1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A* | Back alignment and structure |
|---|
Probab=98.82 E-value=3.1e-10 Score=132.45 Aligned_cols=134 Identities=19% Similarity=0.219 Sum_probs=92.7
Q ss_pred EEEeeeeEECCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCC----CChHHHH
Q 000984 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQK----LQLKWLR 1118 (1198)
Q Consensus 1043 I~f~nVsf~Y~~~~~~~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~~----i~l~~LR 1118 (1198)
++++|++|.|. ...+|+++ +. ++|+.++|+|||||||||++++|++++.|++|+|.++|.++.. ++...++
T Consensus 144 ~~l~~Lg~~~~---~~~~L~~l-~~-~~ggii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ed~ie~~~~~~~q~~v~ 218 (418)
T 1p9r_A 144 LDLHSLGMTAH---NHDNFRRL-IK-RPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPIEFDIDGIGQTQVN 218 (418)
T ss_dssp CCGGGSCCCHH---HHHHHHHH-HT-SSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSCCSCCSSSEEEECB
T ss_pred CCHHHcCCCHH---HHHHHHHH-HH-hcCCeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEecccchhccCCcceEEEc
Confidence 45666666663 23478888 53 8999999999999999999999999999999999999988732 1123455
Q ss_pred hhcceec---------cccccc--c-----ccHHHHHhcCCC--------CCCCHHHHHHHHHHcchHH--HHHhccccc
Q 000984 1119 QQMGLVS---------QEPVLF--N-----DTIRANIAYGKG--------GDATEAEIQAASEMANAHK--FICSLQQVR 1172 (1198)
Q Consensus 1119 ~~IsiV~---------Qdp~LF--~-----gTIreNI~~g~~--------~~~tdeei~~Al~~A~l~d--fI~~LP~g~ 1172 (1198)
+++++++ |||.++ . -|+++|+.++.. +..+..+..+.++..++.+ ....|..|.
T Consensus 219 ~~~g~~f~~~lr~~Lrq~pd~i~vgEiRd~et~~~~l~a~~tGhlv~~tlh~~~~~~~i~rL~~lgl~~~~~~~~LSgg~ 298 (418)
T 1p9r_A 219 PRVDMTFARGLRAILRQDPDVVMVGEIRDLETAQIAVQASLTGHLVMSTLHTNTAVGAVTRLRDMGIEPFLISSSLLGVL 298 (418)
T ss_dssp GGGTBCHHHHHHHHGGGCCSEEEESCCCSHHHHHHHHHHHHTTCEEEEEECCSSSHHHHHHHHHHTCCHHHHHHHEEEEE
T ss_pred cccCcCHHHHHHHHhccCCCeEEEcCcCCHHHHHHHHHHHHhCCCcccccchhhHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 6676655 999763 2 389999876311 1112234555566666554 345677777
Q ss_pred cceeeeeec
Q 000984 1173 TSRLLLVMI 1181 (1198)
Q Consensus 1173 dt~v~~~~~ 1181 (1198)
.-+++-.+.
T Consensus 299 ~QRLaraL~ 307 (418)
T 1p9r_A 299 AQRLVRTLC 307 (418)
T ss_dssp EEEEEEEEC
T ss_pred HHHhhhhhc
Confidence 777666554
|
| >2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A* | Back alignment and structure |
|---|
Probab=98.81 E-value=8.1e-10 Score=126.10 Aligned_cols=65 Identities=20% Similarity=0.244 Sum_probs=59.6
Q ss_pred cEEEeeeeEECCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCccc
Q 000984 1042 EIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEI 1109 (1198)
Q Consensus 1042 ~I~f~nVsf~Y~~~~~~~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI 1109 (1198)
-++.+||++.|.. +..||+++ |+|.+||++||+|++|||||||+++|.|+.+|+.|.|.++|.+.
T Consensus 45 ~i~~~~l~~~~~t--g~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~~g~i~~~G~~~ 109 (347)
T 2obl_A 45 PLLRQVIDQPFIL--GVRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGASADIIVLALIGERG 109 (347)
T ss_dssp STTCCCCCSEECC--SCHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCH
T ss_pred CeeecccceecCC--CCEEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCCCCEEEEEEecccH
Confidence 4889999999963 34699999 99999999999999999999999999999999999999999763
|
| >1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A* | Back alignment and structure |
|---|
Probab=98.81 E-value=3.8e-10 Score=120.46 Aligned_cols=89 Identities=10% Similarity=0.020 Sum_probs=67.0
Q ss_pred EEeeCCCEEEEEcCCCCCHHHHHHHHhcccCC--CCCeEEECCcccCCCChHHHHhhcceecccccccccc-H----HHH
Q 000984 1066 LKIRAGKTVALVGESGSGKSTVVSLLQRFYDP--DAGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDT-I----RAN 1138 (1198)
Q Consensus 1066 ~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp--~~G~I~IDG~dI~~i~l~~LR~~IsiV~Qdp~LF~gT-I----reN 1138 (1198)
-+.++|+.++|+||||||||||+++|.++++| ..|+|.++|.+.+. ..++.++|+||++.+|... . .||
T Consensus 11 ~~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~~~~----~e~~gi~y~fq~~~~f~~~~~~~~f~E~ 86 (219)
T 1s96_A 11 HHMAQGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRP----GEVHGEHYFFVNHDEFKEMISRDAFLEH 86 (219)
T ss_dssp ----CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCT----TCCBTTTBEECCHHHHHHHHHTTCEEEE
T ss_pred ccCCCCcEEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCCCCCc----ccccCceEEECCHHHHHHHHhcCHHHHH
Confidence 46799999999999999999999999999986 68999999987653 2467899999999999764 4 588
Q ss_pred HhcCCC-CCCCHHHHHHHHHH
Q 000984 1139 IAYGKG-GDATEAEIQAASEM 1158 (1198)
Q Consensus 1139 I~~g~~-~~~tdeei~~Al~~ 1158 (1198)
+.+... -..+.+++.++++.
T Consensus 87 ~~~~~~~yg~~~~~v~~~l~~ 107 (219)
T 1s96_A 87 AEVFGNYYGTSREAIEQVLAT 107 (219)
T ss_dssp EEETTEEEEEEHHHHHHHHTT
T ss_pred HHHHhccCCCCHHHHHHHHhc
Confidence 875311 01245667777653
|
| >1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=98.80 E-value=1.4e-09 Score=112.70 Aligned_cols=81 Identities=21% Similarity=0.208 Sum_probs=65.6
Q ss_pred eCCCEEEEEcCCCCCHHHHHHHHhcccCC-CCCeEE----------ECCcccCCCChHHHHhhcceeccccccccccHHH
Q 000984 1069 RAGKTVALVGESGSGKSTVVSLLQRFYDP-DAGHIT----------LDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRA 1137 (1198)
Q Consensus 1069 ~~GekvaIVG~SGSGKSTL~~lL~R~ydp-~~G~I~----------IDG~dI~~i~l~~LR~~IsiV~Qdp~LF~gTIre 1137 (1198)
.+|+.++|+||||||||||+++|.+++++ ..|.|. +||+|+..++.+.+++. +.|+.+++.+++.+
T Consensus 3 ~~g~~i~i~GpsGsGKSTL~~~L~~~~~~~~~~~i~~ttr~~~~ge~~g~~~~~~~~~~~~~~---~~~~~~l~~~~~~~ 79 (180)
T 1kgd_A 3 HMRKTLVLLGAHGVGRRHIKNTLITKHPDRFAYPIPHTTRPPKKDEENGKNYYFVSHDQMMQD---ISNNEYLEYGSHED 79 (180)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCC---CCBTTTBEECCHHHHHHH---HHTTCEEEEEEETT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCCccEEEeeeccCCCCCccccCCCeeEEeCHHHHHHH---HHcCCceEEEEEcC
Confidence 36999999999999999999999999863 345553 58999988999999875 67999999999999
Q ss_pred HHhcCCCCCCCHHHHHHHHH
Q 000984 1138 NIAYGKGGDATEAEIQAASE 1157 (1198)
Q Consensus 1138 NI~~g~~~~~tdeei~~Al~ 1157 (1198)
| .||. +.+++.++++
T Consensus 80 n-~yg~----~~~~i~~~l~ 94 (180)
T 1kgd_A 80 A-MYGT----KLETIRKIHE 94 (180)
T ss_dssp E-EEEE----EHHHHHHHHH
T ss_pred c-cccc----cHHHHHHHHH
Confidence 9 5763 3555666665
|
| >3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B* | Back alignment and structure |
|---|
Probab=98.77 E-value=2.4e-09 Score=121.04 Aligned_cols=76 Identities=14% Similarity=0.180 Sum_probs=65.0
Q ss_pred EeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCCh----HHHHhhcc--eeccccccc-cccHHHHH
Q 000984 1067 KIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQL----KWLRQQMG--LVSQEPVLF-NDTIRANI 1139 (1198)
Q Consensus 1067 ~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~~i~l----~~LR~~Is--iV~Qdp~LF-~gTIreNI 1139 (1198)
..++|+.++||||+||||||+++.|.+++.|++|+|.++|.|+..... ..++++++ +++|++.++ ..|+++|+
T Consensus 125 ~~~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l 204 (328)
T 3e70_C 125 KAEKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAI 204 (328)
T ss_dssp SSCSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHH
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHH
Confidence 457899999999999999999999999999999999999999987663 34566666 899998877 45899999
Q ss_pred hcC
Q 000984 1140 AYG 1142 (1198)
Q Consensus 1140 ~~g 1142 (1198)
.++
T Consensus 205 ~~~ 207 (328)
T 3e70_C 205 QHA 207 (328)
T ss_dssp HHH
T ss_pred HHH
Confidence 653
|
| >4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=98.77 E-value=1.8e-09 Score=127.74 Aligned_cols=81 Identities=22% Similarity=0.284 Sum_probs=69.6
Q ss_pred ccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccC--------------------------------------CCCCe
Q 000984 1060 VFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYD--------------------------------------PDAGH 1101 (1198)
Q Consensus 1060 vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~yd--------------------------------------p~~G~ 1101 (1198)
+|+++||++++| .++|||+||||||||+++|..+.. +.+|+
T Consensus 50 ~l~~v~l~~~~G-~~~lvG~NGaGKStLl~aI~~l~~~~~~~~~i~~g~~~~~v~~~~~~~~~~~~~~l~r~~~~~~~~~ 128 (415)
T 4aby_A 50 TITQLELELGGG-FCAFTGETGAGKSIIVDALGLLLGGRANHDLIRSGEKELLVTGFWGDGDESEADSASRRLSSAGRGA 128 (415)
T ss_dssp TEEEEEEECCSS-EEEEEESHHHHHHHHTHHHHHHTTCCCCGGGBCTTCSEEEEEEEC--------CEEEEEEETTSCEE
T ss_pred ceeeEEEecCCC-cEEEECCCCCCHHHHHHHHHHHhCCCccHHHhcCCCCeEEEEEEEEecCCCceEEEEEEEecCCceE
Confidence 799999999999 999999999999999999965543 45789
Q ss_pred EEECCcccCCCChHHHHhh-cceeccccccccccHHHHHhc
Q 000984 1102 ITLDGVEIQKLQLKWLRQQ-MGLVSQEPVLFNDTIRANIAY 1141 (1198)
Q Consensus 1102 I~IDG~dI~~i~l~~LR~~-IsiV~Qdp~LF~gTIreNI~~ 1141 (1198)
|++||.+++..++.++++. +++++|++.++-++-.++..+
T Consensus 129 i~ing~~~~~~~~~~~~~~~i~~~~q~~~l~l~~~~~~r~~ 169 (415)
T 4aby_A 129 ARLSGEVVSVRELQEWAQGRLTIHWQHSAVSLLSPANQRGL 169 (415)
T ss_dssp EEETTEEECHHHHHHHHTTTEEEETTTCTTTTSSHHHHHHH
T ss_pred EEECCEECCHHHHHHHHhhceEEecCcccccccCHHHHHHH
Confidence 9999999988788888887 799999998887776655543
|
| >2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.77 E-value=1e-09 Score=128.00 Aligned_cols=90 Identities=21% Similarity=0.181 Sum_probs=56.8
Q ss_pred ccEEEeeeeEECCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHhh
Q 000984 1041 GEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQ 1120 (1198)
Q Consensus 1041 G~I~f~nVsf~Y~~~~~~~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~~i~l~~LR~~ 1120 (1198)
+.|+|+||+++|+. .++|+|+||+| +|||+||||||||++.|++...+..| .+|.++...+ ...++.
T Consensus 10 ~~l~~~~l~~~y~~---~~vl~~vsf~I------~lvG~sGaGKSTLln~L~g~~~~~~~---~~~~~~~~~~-t~~~~~ 76 (418)
T 2qag_C 10 GYVGFANLPNQVYR---KSVKRGFEFTL------MVVGESGLGKSTLINSLFLTDLYSPE---YPGPSHRIKK-TVQVEQ 76 (418)
T ss_dssp -----CCCCCCTTT---TTCC-CCCEEE------EEECCTTSSHHHHHHHHTTCCCCCCC---CCSCC------CCEEEE
T ss_pred CcEEEEecceeECC---EEEecCCCEEE------EEECCCCCcHHHHHHHHhCCCCCCCC---CCCcccCCcc-ceeeee
Confidence 56999999999963 36999999998 99999999999999999999876555 2454443211 112467
Q ss_pred cceeccccccc-cccHHHHHhcCC
Q 000984 1121 MGLVSQEPVLF-NDTIRANIAYGK 1143 (1198)
Q Consensus 1121 IsiV~Qdp~LF-~gTIreNI~~g~ 1143 (1198)
+++++|++.++ .-||.||+.++.
T Consensus 77 i~~v~q~~~~~~~Ltv~Dt~g~~~ 100 (418)
T 2qag_C 77 SKVLIKEGGVQLLLTIVDTPGFGD 100 (418)
T ss_dssp EECC------CEEEEEEECC----
T ss_pred EEEEEecCCcccceeeeechhhhh
Confidence 89999998876 679999998874
|
| >1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=98.77 E-value=1e-09 Score=123.58 Aligned_cols=102 Identities=18% Similarity=0.146 Sum_probs=65.9
Q ss_pred EEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEE---CCeecCCcCHHHHhcceEEEcCCCCC------------
Q 000984 407 ISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLI---DGINLKEFQLQWIRKKIGLVSQEPVL------------ 471 (1198)
Q Consensus 407 l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i---~g~~~~~~~~~~~r~~i~~v~Q~~~l------------ 471 (1198)
|++.+|++++|+||||||||||+++|.|+..|+.|+|.+ +|.++.........+.+++++|+|.+
T Consensus 164 f~~l~geiv~l~G~sG~GKSTll~~l~g~~~~~~G~i~~~~~~g~~~t~~~~~~~~~~~g~v~q~p~~~~~~~~~~~~~~ 243 (301)
T 1u0l_A 164 KEYLKGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGFANLEINDIEPEE 243 (301)
T ss_dssp HHHHSSSEEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCCEEECTTSCEEESSCSSTTCCCCSSCHHH
T ss_pred HHHhcCCeEEEECCCCCcHHHHHHHhcccccccccceecccCCCCCceeeeEEEEcCCCCEEEECcCCCccCCCcCCHHH
Confidence 456689999999999999999999999999999999999 89887654421112369999999953
Q ss_pred ----C-cccHHHHHhcCCC---CCCHHHHHHHHHHhcH-HHHHHhCC
Q 000984 472 ----F-TGSIKDNIAYGKD---DATTEEIRVATELANA-AKFIDKLP 509 (1198)
Q Consensus 472 ----~-~~ti~~Ni~~~~~---~~~~~~~~~~~~~~~~-~~~i~~l~ 509 (1198)
| .-|+ +|+.|+.. .....++.++++..++ .+...+.|
T Consensus 244 ~~~l~~~~~~-~n~~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~~~ 289 (301)
T 1u0l_A 244 LKHYFKEFGD-KQCFFSDCNHVDEPECGVKEAVENGEIAESRYENYV 289 (301)
T ss_dssp HGGGSTTSSS-CCCSSTTCCSSSCSSCHHHHHHHHTSSCHHHHHHHH
T ss_pred HHHHHHhccc-ccCcCCCCcCCCCCCcHHHHHHHcCCCCHHHHHHHH
Confidence 4 3477 88887531 1223567778887777 34444444
|
| >1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=98.76 E-value=6.6e-10 Score=118.17 Aligned_cols=91 Identities=21% Similarity=0.333 Sum_probs=54.3
Q ss_pred EEEeeeeEECCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhccc-----CCCCCeEEE-------CCcccC
Q 000984 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFY-----DPDAGHITL-------DGVEIQ 1110 (1198)
Q Consensus 1043 I~f~nVsf~Y~~~~~~~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~y-----dp~~G~I~I-------DG~dI~ 1110 (1198)
|+++|++|+|+ .++|++ |.+++|++++|||++|||||||++.|.+.. .|+.|.+.+ ++..+-
T Consensus 4 l~~~~~~~~~~----~~~l~~--~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~~~~l~ 77 (210)
T 1pui_A 4 LNYQQTHFVMS----APDIRH--LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLV 77 (210)
T ss_dssp -------CEEE----ESSGGG--SSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEETTEEEE
T ss_pred hhhhhhhheee----cCCHhH--CCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecCCEEEE
Confidence 78999999995 258988 999999999999999999999999999988 788888765 333332
Q ss_pred CCC-----------hHHHHhhcceeccccccccc-cHHHHH
Q 000984 1111 KLQ-----------LKWLRQQMGLVSQEPVLFND-TIRANI 1139 (1198)
Q Consensus 1111 ~i~-----------l~~LR~~IsiV~Qdp~LF~g-TIreNI 1139 (1198)
+.+ .+.+|+.++.+.|+...+++ ++..|+
T Consensus 78 Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~ 118 (210)
T 1pui_A 78 DLPGYGYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDI 118 (210)
T ss_dssp ECCCCC------CCHHHHHHHHHHHHHHCTTEEEEEEEEET
T ss_pred ECcCCcccccCHHHHHHHHHHHHHHHHhhhcccEEEEEEEC
Confidence 221 24567777777776544433 333444
|
| >1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A* | Back alignment and structure |
|---|
Probab=98.75 E-value=2e-10 Score=123.90 Aligned_cols=127 Identities=15% Similarity=0.185 Sum_probs=97.5
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhccC---CCCCCeEEE--------CCeecC-CcCHHHHhcceEEEcCCC------CCCc
Q 000984 412 GTTAALVGQSGSGKSTVISLIERFY---DPQAGEVLI--------DGINLK-EFQLQWIRKKIGLVSQEP------VLFT 473 (1198)
Q Consensus 412 g~~~~ivG~~GsGKStl~~~l~g~~---~~~~G~i~i--------~g~~~~-~~~~~~~r~~i~~v~Q~~------~l~~ 473 (1198)
+.+++|+|++||||||+++.|.+.+ .++.|.+.. +|.++. +....++++++++++|++ .+..
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 84 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYRVLALAALHHHVDVASEDALVPLASHLDVRFVSTNGNLEVILEG 84 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHTCCEEEEEETTEEEEEETT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcceeehhhHHHHHcCCCccCHHHHHHHHHhCceeeeccCCCceEEECC
Confidence 5689999999999999999999876 677888877 677765 355677889999999987 4456
Q ss_pred ccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchh-cCCCCCCChHHHHHHhHHHhhccCCCEEEEeCCC
Q 000984 474 GSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLV-GEHGTQLSGGQKQRIAIARAILKDPRILLLDEAT 550 (1198)
Q Consensus 474 ~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v-~~~g~~lSgGqkqri~lARal~~~~~illlDe~t 550 (1198)
.++.+++. ++++..++..+..++.+.....+..+.+ .++|.-++|+ .++++++.+++++|+.++.
T Consensus 85 ~~v~~~~~-------~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~vldg~-----~~~~~~~~~~d~~i~l~~~ 150 (227)
T 1cke_A 85 EDVSGEIR-------TQEVANAASQVAAFPRVREALLRRQRAFRELPGLIADGR-----DMGTVVFPDAPVKIFLDAS 150 (227)
T ss_dssp EECHHHHT-------SHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCEEEEES-----SCCCCCCTTCSEEEEEECC
T ss_pred eeCchhhC-------CHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCCEEEECC-----CccceEecCCCEEEEEeCC
Confidence 67777763 4567777777777777776655555554 3456677887 5677888999999998874
|
| >3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A* | Back alignment and structure |
|---|
Probab=98.75 E-value=3.2e-09 Score=125.16 Aligned_cols=64 Identities=16% Similarity=0.133 Sum_probs=55.2
Q ss_pred EEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcC
Q 000984 385 ELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQ 454 (1198)
Q Consensus 385 ~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~ 454 (1198)
.+.++++.. ..+|+|+||++++ ++++|+||||||||||+++|+|+++|++|+|.++|.++...+
T Consensus 8 ~l~~l~~~~-----~~~l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~ 71 (483)
T 3euj_A 8 KFRSLTLIN-----WNGFFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALIPDLTLLNFRNTTEAGST 71 (483)
T ss_dssp EEEEEEEEE-----ETTEEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHHCCCTTTCCCCCTTSCSCC
T ss_pred ceeEEEEec-----cccccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEEcccCc
Confidence 345555432 2379999999999 999999999999999999999999999999999999887554
|
| >3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum} | Back alignment and structure |
|---|
Probab=98.74 E-value=2.2e-09 Score=116.19 Aligned_cols=78 Identities=21% Similarity=0.249 Sum_probs=49.8
Q ss_pred cccccceEEeeCCCEEEEEcCCCCCHHHHHHHHh-ccc------------CCCCCeEEECCcccCCCChHHHHhhcceec
Q 000984 1059 QVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQ-RFY------------DPDAGHITLDGVEIQKLQLKWLRQQMGLVS 1125 (1198)
Q Consensus 1059 ~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~-R~y------------dp~~G~I~IDG~dI~~i~l~~LR~~IsiV~ 1125 (1198)
.-.+++||++++|+.+||+||||||||||+++|. +++ +|..|.+ +|+++...+...++.. +.
T Consensus 15 ~~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~~~~~~~~~~~~~~~~g~~--~g~~~~~~~~~~~~~~---~~ 89 (231)
T 3lnc_A 15 QTQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQKNNIVKSVSVTTRAARKGEK--EGKDYYFVDREEFLRL---CS 89 (231)
T ss_dssp -------CCEECCCEEEEECSCC----CHHHHHHC----CEEECCCEESSCCCTTCC--BTTTBEECCHHHHHHH---HH
T ss_pred cccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCCCCcccccccCCCCCCcccc--CCCeEEEecHHHhhhh---hh
Confidence 3689999999999999999999999999999999 999 7777765 7777766666666543 34
Q ss_pred cccccccccHHHHHhcC
Q 000984 1126 QEPVLFNDTIRANIAYG 1142 (1198)
Q Consensus 1126 Qdp~LF~gTIreNI~~g 1142 (1198)
++.+++.+++..|+ ||
T Consensus 90 ~~~~~~~~~~~~~~-~~ 105 (231)
T 3lnc_A 90 NGEIIEHAEVFGNF-YG 105 (231)
T ss_dssp TTCEEEEEEETTEE-EE
T ss_pred cCceehhhhhcccc-CC
Confidence 66677666776665 55
|
| >3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=98.74 E-value=2.9e-09 Score=112.70 Aligned_cols=71 Identities=11% Similarity=0.143 Sum_probs=57.9
Q ss_pred eEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHhhcceeccccccccc-cHHHHH
Q 000984 1065 NLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFND-TIRANI 1139 (1198)
Q Consensus 1065 s~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~~i~l~~LR~~IsiV~Qdp~LF~g-TIreNI 1139 (1198)
|+++++|+.+||+||||||||||+++|.+++ | .+.++|.++...+....+..+++++|++.+|.. +..+|+
T Consensus 1 s~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (205)
T 3tr0_A 1 SNAMNKANLFIISAPSGAGKTSLVRALVKAL-A---EIKISISHTTRPKRPGDQEGVDYFFIDETRFQAMVKEGAF 72 (205)
T ss_dssp ----CCCCEEEEECCTTSCHHHHHHHHHHHS-S---SEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHHTCE
T ss_pred CCcCCCCcEEEEECcCCCCHHHHHHHHHhhC-C---CeEEeceeccCCCchhHhcCceEEeccHHHHHHHHhcCcE
Confidence 6788999999999999999999999999997 3 699999999887777778899999999988865 344444
|
| >2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V | Back alignment and structure |
|---|
Probab=98.74 E-value=3.4e-10 Score=128.63 Aligned_cols=96 Identities=14% Similarity=0.188 Sum_probs=64.3
Q ss_pred ccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccC-CCCCeEEEC-CcccCCCChHHHHhhcceeccccccccc-cHH
Q 000984 1060 VFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYD-PDAGHITLD-GVEIQKLQLKWLRQQMGLVSQEPVLFND-TIR 1136 (1198)
Q Consensus 1060 vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~yd-p~~G~I~ID-G~dI~~i~l~~LR~~IsiV~Qdp~LF~g-TIr 1136 (1198)
.++++++. .+|+++||+|+||||||||+++|.++.. |..|.|.++ |.+.. ...++.++++||++.|++. |++
T Consensus 205 gl~~L~~~-~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~~G~I~~~~G~g~~----tt~~~~i~~v~q~~~l~dtpgv~ 279 (358)
T 2rcn_A 205 GLKPLEEA-LTGRISIFAGQSGVGKSSLLNALLGLQNEILTNDVSNVSGLGQH----TTTAARLYHFPHGGDVIDSPGVR 279 (358)
T ss_dssp THHHHHHH-HTTSEEEEECCTTSSHHHHHHHHHCCSSCCCCC-----------------CCCEEEECTTSCEEEECHHHH
T ss_pred CHHHHHHh-cCCCEEEEECCCCccHHHHHHHHhccccccccCCccccCCCCcc----ceEEEEEEEECCCCEecCcccHH
Confidence 47777775 4899999999999999999999999999 999999997 87653 2456789999999998865 798
Q ss_pred HHHhcCCCCCCCHHHHH----HHHHHcchHHH
Q 000984 1137 ANIAYGKGGDATEAEIQ----AASEMANAHKF 1164 (1198)
Q Consensus 1137 eNI~~g~~~~~tdeei~----~Al~~A~l~df 1164 (1198)
++-.. ..+.+++. ++++.+++.+|
T Consensus 280 e~~l~----~l~~~e~~~~~~e~l~~~gl~~f 307 (358)
T 2rcn_A 280 EFGLW----HLEPEQITQGFVEFHDYLGHCKY 307 (358)
T ss_dssp TCCCC----CCCHHHHHHTSGGGGGGTTCSSS
T ss_pred Hhhhc----CCCHHHHHHHHHHHHHHcCCchh
Confidence 86322 34555543 33444444443
|
| >1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A* | Back alignment and structure |
|---|
Probab=98.72 E-value=2.1e-08 Score=112.10 Aligned_cols=132 Identities=17% Similarity=0.159 Sum_probs=88.4
Q ss_pred EEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcceE
Q 000984 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIG 463 (1198)
Q Consensus 384 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~ 463 (1198)
+.++++++.|+.. . ++++|+ +|+.++++|++||||||++..|.+.+.+..|+|.+.+.|+..-...
T Consensus 77 ~~~~~l~~~~~~~---~--~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~~~~~~------- 142 (295)
T 1ls1_A 77 TVYEALKEALGGE---A--RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAR------- 142 (295)
T ss_dssp HHHHHHHHHTTSS---C--CCCCCC--SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSCHHHH-------
T ss_pred HHHHHHHHHHCCC---C--ceeecC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcccHhHH-------
Confidence 3445566666421 1 677887 8999999999999999999999999999899998877665321111
Q ss_pred EEcCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhhccCCCE
Q 000984 464 LVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRI 543 (1198)
Q Consensus 464 ~v~Q~~~l~~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal~~~~~i 543 (1198)
+ +.....+. . |++-... +..-...+-+|.+|+++...++|+
T Consensus 143 --------------~------------ql~~~~~~-------~----~l~~~~~--~~~~~p~~l~~~~l~~~~~~~~D~ 183 (295)
T 1ls1_A 143 --------------E------------QLRLLGEK-------V----GVPVLEV--MDGESPESIRRRVEEKARLEARDL 183 (295)
T ss_dssp --------------H------------HHHHHHHH-------H----TCCEEEC--CTTCCHHHHHHHHHHHHHHHTCCE
T ss_pred --------------H------------HHHHhccc-------C----CeEEEEc--CCCCCHHHHHHHHHHHHHhCCCCE
Confidence 0 00000010 0 2221111 112344556789999998899999
Q ss_pred EEEeCC-CCCCCHHhHHHHHHHHHHH
Q 000984 544 LLLDEA-TSALDAESEKVVQEALDRI 568 (1198)
Q Consensus 544 lllDe~-ts~lD~~~~~~i~~~i~~~ 568 (1198)
+|+|+| ++++|......+.+..+..
T Consensus 184 viiDtpp~~~~d~~~~~~l~~~~~~~ 209 (295)
T 1ls1_A 184 ILVDTAGRLQIDEPLMGELARLKEVL 209 (295)
T ss_dssp EEEECCCCSSCCHHHHHHHHHHHHHH
T ss_pred EEEeCCCCccccHHHHHHHHHHhhhc
Confidence 999999 9999987766666555443
|
| >1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=98.72 E-value=2.8e-09 Score=111.55 Aligned_cols=70 Identities=21% Similarity=0.211 Sum_probs=56.5
Q ss_pred EeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHhhcceeccccccccccHHHHHhc
Q 000984 1067 KIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIAY 1141 (1198)
Q Consensus 1067 ~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~~i~l~~LR~~IsiV~Qdp~LF~gTIreNI~~ 1141 (1198)
.+++|+.++|+|++||||||++++|.+. |..|.|.+||.++..... -++.+++++|++. .+.|+++|+.+
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~--~~~g~i~i~~d~~~~~~~--~~~~~~~~~~~~~-~~~~v~~~l~~ 74 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIAEALANL--PGVPKVHFHSDDLWGYIK--HGRIDPWLPQSHQ-QNRMIMQIAAD 74 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHHHHHHTC--SSSCEEEECTTHHHHTCC--SSCCCTTSSSHHH-HHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHhc--cCCCeEEEcccchhhhhh--cccccCCccchhh-hhHHHHHHHHH
Confidence 4789999999999999999999999998 678999999988754321 1345789999876 56688888754
|
| >1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=98.71 E-value=6.6e-10 Score=123.76 Aligned_cols=91 Identities=10% Similarity=0.085 Sum_probs=61.9
Q ss_pred eCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHhhcceeccccccccccHHHHHhcCCCCC--
Q 000984 1069 RAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGD-- 1146 (1198)
Q Consensus 1069 ~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~~i~l~~LR~~IsiV~Qdp~LF~gTIreNI~~g~~~~-- 1146 (1198)
+++..|||+|+||||||||+++|.+++.+. | . . |+.+.+|+||+++|++++++|+.++.+..
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~~-g------~--------~-~~~~~iv~~D~f~~~~~~~~~l~~~~~~~~l 92 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLMEK-Y------G--------G-EKSIGYASIDDFYLTHEDQLKLNEQFKNNKL 92 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHH-H------G--------G-GSCEEEEEGGGGBCCHHHHHHHHHHTTTCGG
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhhhc-C------C--------C-CceEEEeccccccCChHHHHHHhccccccch
Confidence 356899999999999999999999999874 2 1 1 45666779999999999999998752100
Q ss_pred CCHHHHHHHHHHcchHHHHHhccccccce
Q 000984 1147 ATEAEIQAASEMANAHKFICSLQQVRTSR 1175 (1198)
Q Consensus 1147 ~tdeei~~Al~~A~l~dfI~~LP~g~dt~ 1175 (1198)
.+....-++.+.+.+.+++..|++|++|.
T Consensus 93 ~~~~g~p~a~d~~~l~~~l~~l~~g~~t~ 121 (290)
T 1odf_A 93 LQGRGLPGTHDMKLLQEVLNTIFNNNEHP 121 (290)
T ss_dssp GSSSCSTTSBCHHHHHHHHHHHTC-----
T ss_pred hhhccCcchhHHHHHHHHHHHhhccCccc
Confidence 00000112233445778999999998764
|
| >1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10 | Back alignment and structure |
|---|
Probab=98.70 E-value=8e-09 Score=115.64 Aligned_cols=97 Identities=15% Similarity=0.372 Sum_probs=70.1
Q ss_pred eEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcceEEEcCCCCCCcccHHHHHhcCCC
Q 000984 406 SISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKD 485 (1198)
Q Consensus 406 ~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~Ni~~~~~ 485 (1198)
++..++|+.++|+|++||||||++..|.+.+.+.+|+|.+.+.|... ....++
T Consensus 98 ~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r---------------------~~a~eq------ 150 (306)
T 1vma_A 98 NVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFR---------------------AAAIEQ------ 150 (306)
T ss_dssp CCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTC---------------------HHHHHH------
T ss_pred cccCCCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEcccccc---------------------HHHHHH------
Confidence 44567899999999999999999999999999888888887655321 011111
Q ss_pred CCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHH---hHHHhhccCCCEEEEeCCCC
Q 000984 486 DATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRI---AIARAILKDPRILLLDEATS 551 (1198)
Q Consensus 486 ~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri---~lARal~~~~~illlDe~ts 551 (1198)
+...++ .+ |++. + ...|||+.|++ +|+||+.++++++|+|+|..
T Consensus 151 ------L~~~~~---------~~--gl~~-~----~~~s~~~~~~v~~~al~~a~~~~~dvvIiDtpg~ 197 (306)
T 1vma_A 151 ------LKIWGE---------RV--GATV-I----SHSEGADPAAVAFDAVAHALARNKDVVIIDTAGR 197 (306)
T ss_dssp ------HHHHHH---------HH--TCEE-E----CCSTTCCHHHHHHHHHHHHHHTTCSEEEEEECCC
T ss_pred ------HHHHHH---------Hc--CCcE-E----ecCCccCHHHHHHHHHHHHHhcCCCEEEEECCCc
Confidence 111111 11 2222 1 24589999999 99999999999999999974
|
| >1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=98.69 E-value=2.3e-09 Score=119.61 Aligned_cols=97 Identities=16% Similarity=0.244 Sum_probs=57.9
Q ss_pred EEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEE---CCcccCCCChHHHHhhcceecccccccc-----ccHHH
Q 000984 1066 LKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITL---DGVEIQKLQLKWLRQQMGLVSQEPVLFN-----DTIRA 1137 (1198)
Q Consensus 1066 ~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~I---DG~dI~~i~l~~LR~~IsiV~Qdp~LF~-----gTIre 1137 (1198)
+++.+|++++|+|+||+|||||+++|.++..|..|+|.+ +|.++.... +..+..+++|+|.|-++. -|+ |
T Consensus 168 ~~~~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~G~I~~~~~~G~~tt~~~-~~~~~~~g~v~dtpg~~~~~l~~lt~-e 245 (307)
T 1t9h_A 168 IPHFQDKTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHV-ELIHTSGGLVADTPGFSSLEFTDIEE-E 245 (307)
T ss_dssp GGGGTTSEEEEEESHHHHHHHHHHHHCC-------------------CCCC-CEEEETTEEEESSCSCSSCCCTTCCH-H
T ss_pred HhhcCCCEEEEECCCCCCHHHHHHHhcccccccccceeeecCCCcccccHH-HHhhcCCEEEecCCCccccccccCCH-H
Confidence 345689999999999999999999999999999999999 898886532 222223899999997654 477 8
Q ss_pred HHh--cC-------------C-CCCCCHHHHHHHHHHcchHHH
Q 000984 1138 NIA--YG-------------K-GGDATEAEIQAASEMANAHKF 1164 (1198)
Q Consensus 1138 NI~--~g-------------~-~~~~tdeei~~Al~~A~l~df 1164 (1198)
||. |. . .....+..+.+|++..++.+.
T Consensus 246 ~l~~~f~~~~~~~~~C~f~~c~h~~e~~~~v~~aLe~~~L~~~ 288 (307)
T 1t9h_A 246 ELGYTFPDIREKSSSCKFRGCLHLKEPKCAVKQAVEDGELKQY 288 (307)
T ss_dssp HHGGGSHHHHHHGGGCSSTTCCSSSCSSCHHHHHHHHTSSCHH
T ss_pred HHHHHHHHHHHHhhhccccCCCCccCHHHHHHHHHHhCCChHH
Confidence 983 21 0 011223568889988888653
|
| >1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11 | Back alignment and structure |
|---|
Probab=98.69 E-value=4.5e-09 Score=120.56 Aligned_cols=102 Identities=20% Similarity=0.205 Sum_probs=79.3
Q ss_pred ccccc-eEEeeCCCEEEEEcCCCCCHHHHHHHHhccc--CCCC----Ce-EEECCcccCCCChHHHHhhcceeccccccc
Q 000984 1060 VFRDL-NLKIRAGKTVALVGESGSGKSTVVSLLQRFY--DPDA----GH-ITLDGVEIQKLQLKWLRQQMGLVSQEPVLF 1131 (1198)
Q Consensus 1060 vL~~i-s~~I~~GekvaIVG~SGSGKSTL~~lL~R~y--dp~~----G~-I~IDG~dI~~i~l~~LR~~IsiV~Qdp~LF 1131 (1198)
.|+++ ++.|++|+.++|+||+|||||||++.|++.+ +|++ |+ |+|||.+.- .++++++++|++.++
T Consensus 119 ~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~------~~~~i~~i~q~~~~~ 192 (349)
T 1pzn_A 119 SLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTF------RPERIREIAQNRGLD 192 (349)
T ss_dssp HHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCC------CHHHHHHHHHTTTCC
T ss_pred HHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCC------CHHHHHHHHHHcCCC
Confidence 46655 5899999999999999999999999999998 6665 68 999998762 367899999999999
Q ss_pred cccHHHHHhcCCCCCCCHHHHHHHHHHcchHHHHHhcccc
Q 000984 1132 NDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQV 1171 (1198)
Q Consensus 1132 ~gTIreNI~~g~~~~~tdeei~~Al~~A~l~dfI~~LP~g 1171 (1198)
..++.+||.+.. ..+.++..+.++. +..++.++..|
T Consensus 193 ~~~v~~ni~~~~--~~~~~~~~~~l~~--~~~~~~~lS~G 228 (349)
T 1pzn_A 193 PDEVLKHIYVAR--AFNSNHQMLLVQQ--AEDKIKELLNT 228 (349)
T ss_dssp HHHHGGGEEEEE--CCSHHHHHHHHHH--HHHHHHHSSSS
T ss_pred HHHHhhCEEEEe--cCChHHHHHHHHH--HHHHHHHhccc
Confidence 999999999863 2333444454443 35566665444
|
| >2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A* | Back alignment and structure |
|---|
Probab=98.69 E-value=1.9e-08 Score=112.41 Aligned_cols=138 Identities=12% Similarity=0.160 Sum_probs=89.5
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcceEEEcCCCCCCcccHHHHHhcCCCCCCH
Q 000984 410 SSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATT 489 (1198)
Q Consensus 410 ~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~Ni~~~~~~~~~ 489 (1198)
++|+.++++|++||||||++..|.+.+.+.+|. ++.++.+|++ ..+..+++..
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~------------------~V~lv~~D~~--r~~a~eqL~~------- 155 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISMLEKHK------------------KIAFITTDTY--RIAAVEQLKT------- 155 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHHHTTCC------------------CEEEEECCCS--STTHHHHHHH-------
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCC------------------EEEEEecCcc--cchHHHHHHH-------
Confidence 478999999999999999999999999887772 5777888873 3333333321
Q ss_pred HHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh
Q 000984 490 EEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIM 569 (1198)
Q Consensus 490 ~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~ 569 (1198)
..+.. |...... ..++..+.+|+++ ++++++|+| |+++|+.....+.+..+-..
T Consensus 156 -----~~~~~-----------gl~~~~~------~~~~~l~~al~~~--~~~dlvIiD--T~G~~~~~~~~~~el~~~l~ 209 (296)
T 2px0_A 156 -----YAELL-----------QAPLEVC------YTKEEFQQAKELF--SEYDHVFVD--TAGRNFKDPQYIDELKETIP 209 (296)
T ss_dssp -----HHTTT-----------TCCCCBC------SSHHHHHHHHHHG--GGSSEEEEE--CCCCCTTSHHHHHHHHHHSC
T ss_pred -----HHHhc-----------CCCeEec------CCHHHHHHHHHHh--cCCCEEEEe--CCCCChhhHHHHHHHHHHHh
Confidence 11100 1111111 1234567788875 899999999 99999877666654433221
Q ss_pred ---CCCeEEEE--ecCcchhhc-cCEEEEEeCCEEEE
Q 000984 570 ---VNRTTVIV--AHRLSTVRN-ADMIAVIHRGKIVE 600 (1198)
Q Consensus 570 ---~~~t~i~i--tH~~~~~~~-~d~i~~l~~G~i~~ 600 (1198)
.+.+++++ +|..+.+.. +|++..++.+.++-
T Consensus 210 ~~~~~~~~lVl~at~~~~~~~~~~~~~~~l~~~giVl 246 (296)
T 2px0_A 210 FESSIQSFLVLSATAKYEDMKHIVKRFSSVPVNQYIF 246 (296)
T ss_dssp CCTTEEEEEEEETTBCHHHHHHHTTTTSSSCCCEEEE
T ss_pred hcCCCeEEEEEECCCCHHHHHHHHHHHhcCCCCEEEE
Confidence 22345555 788776654 66665566666664
|
| >2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1 | Back alignment and structure |
|---|
Probab=98.68 E-value=5.8e-09 Score=125.13 Aligned_cols=98 Identities=21% Similarity=0.249 Sum_probs=74.1
Q ss_pred cccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHhhcceeccccccccc--cHH
Q 000984 1059 QVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFND--TIR 1136 (1198)
Q Consensus 1059 ~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~~i~l~~LR~~IsiV~Qdp~LF~g--TIr 1136 (1198)
.+++++++.+++|+.++|+|||||||||++++|+++++|++|.|.|+|.+--.++. ++.++++.|+++ ..+ |++
T Consensus 248 ~~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~~~~giitied~~E~~~~~---~~~v~~~~r~~~-~~~~~~~~ 323 (511)
T 2oap_1 248 GVLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIEDTREIKLYH---ENWIAEVTRTGM-GEGEIDMY 323 (511)
T ss_dssp HHHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESSCCCCCCC---SSEEEEECBCCS-SSCCBCHH
T ss_pred HHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcCcccccCCC---CCeEEEEeeccc-ccCCcCHH
Confidence 47899999999999999999999999999999999999999999999876323221 456777888766 332 666
Q ss_pred HHHhcCC---C-----CCCCHHHHHHHHHHcc
Q 000984 1137 ANIAYGK---G-----GDATEAEIQAASEMAN 1160 (1198)
Q Consensus 1137 eNI~~g~---~-----~~~tdeei~~Al~~A~ 1160 (1198)
++++... | ++.+++|...+++.++
T Consensus 324 ~~l~~~LR~~PD~iivgEir~~E~~~~l~a~~ 355 (511)
T 2oap_1 324 DLLRAALRQRPDYIIVGEVRGREAQTLFQAMS 355 (511)
T ss_dssp HHHHTTGGGCCSEEEESCCCSTHHHHHHHHHH
T ss_pred HHHHHhhccCCCeEEeCCcCHHHHHHHHHhhc
Confidence 6654221 1 2566777777666553
|
| >1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=98.64 E-value=1.5e-09 Score=121.20 Aligned_cols=73 Identities=23% Similarity=0.306 Sum_probs=44.6
Q ss_pred EEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEE---CCeecCCcCHHHHhcceEEEcCCCCCCc-----ccHHH
Q 000984 407 ISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLI---DGINLKEFQLQWIRKKIGLVSQEPVLFT-----GSIKD 478 (1198)
Q Consensus 407 l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i---~g~~~~~~~~~~~r~~i~~v~Q~~~l~~-----~ti~~ 478 (1198)
+++.+|++++|+||||||||||+++|.|+..|..|+|.+ +|.++.... ...+..++|++|+|-+.. -|+ |
T Consensus 168 ~~~~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~G~I~~~~~~G~~tt~~~-~~~~~~~g~v~dtpg~~~~~l~~lt~-e 245 (307)
T 1t9h_A 168 IPHFQDKTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHV-ELIHTSGGLVADTPGFSSLEFTDIEE-E 245 (307)
T ss_dssp GGGGTTSEEEEEESHHHHHHHHHHHHCC-------------------CCCC-CEEEETTEEEESSCSCSSCCCTTCCH-H
T ss_pred HhhcCCCEEEEECCCCCCHHHHHHHhcccccccccceeeecCCCcccccHH-HHhhcCCEEEecCCCccccccccCCH-H
Confidence 456789999999999999999999999999999999998 887765432 122223899999997653 478 9
Q ss_pred HHh
Q 000984 479 NIA 481 (1198)
Q Consensus 479 Ni~ 481 (1198)
|+.
T Consensus 246 ~l~ 248 (307)
T 1t9h_A 246 ELG 248 (307)
T ss_dssp HHG
T ss_pred HHH
Confidence 984
|
| >4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis} | Back alignment and structure |
|---|
Probab=98.63 E-value=2e-09 Score=118.05 Aligned_cols=78 Identities=14% Similarity=0.209 Sum_probs=63.7
Q ss_pred cccceeEEEeCCCEEEEEcCCCCcHHHHHHHHh---ccCCCCCCeEE--------ECCeecC-CcCHHHHhcceEEEcCC
Q 000984 401 IFSGFSISISSGTTAALVGQSGSGKSTVISLIE---RFYDPQAGEVL--------IDGINLK-EFQLQWIRKKIGLVSQE 468 (1198)
Q Consensus 401 ~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~---g~~~~~~G~i~--------i~g~~~~-~~~~~~~r~~i~~v~Q~ 468 (1198)
++++.+ ++|++++|+||+||||||++++|. |+..++.|.+. .+|.++. ......+++++++++|+
T Consensus 19 ~~~~m~---~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d~g~i~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 95 (252)
T 4e22_A 19 ERPHMT---AIAPVITVDGPSGAGKGTLCKALAESLNWRLLDSGAIYRVLALAALHHQVDISTEEALVPLAAHLDVRFVS 95 (252)
T ss_dssp ----CT---TTSCEEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHHHHHHHHHHHTTCCSSSSTTHHHHHHTCCEEEEE
T ss_pred hhhhcC---CCCcEEEEECCCCCCHHHHHHHHHHhcCCCcCCCCceehHhHHHHHHcCCCcccHHHHHHHHHcCCEEEec
Confidence 444443 789999999999999999999999 99999999998 9999884 55688899999999965
Q ss_pred C------CCCcccHHHHHh
Q 000984 469 P------VLFTGSIKDNIA 481 (1198)
Q Consensus 469 ~------~l~~~ti~~Ni~ 481 (1198)
+ +++..++.+||.
T Consensus 96 ~~~~~~~~l~~~~v~~~i~ 114 (252)
T 4e22_A 96 QNGQLQVILEGEDVSNEIR 114 (252)
T ss_dssp ETTEEEEEETTEECTTGGG
T ss_pred CCCCceEEECCeehhHHHH
Confidence 3 566778888865
|
| >3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP} | Back alignment and structure |
|---|
Probab=98.62 E-value=3.2e-09 Score=112.84 Aligned_cols=54 Identities=24% Similarity=0.305 Sum_probs=46.7
Q ss_pred eeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHhhcceeccccccccccHHHHHh
Q 000984 1068 IRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIA 1140 (1198)
Q Consensus 1068 I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~~i~l~~LR~~IsiV~Qdp~LF~gTIreNI~ 1140 (1198)
.++|+++||+||||||||||+++|.++++|. | ..+++|+||.+.|+++.++|+.
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~-g------------------~~~g~v~~d~~~~~~~~~~~~~ 72 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQ-G------------------LPAEVVPMDGFHLDNRLLEPRG 72 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHHHT-T------------------CCEEEEESGGGBCCHHHHGGGT
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhhc-C------------------CceEEEecCCCcCCHHHHHHhc
Confidence 5789999999999999999999999999976 5 3568888888888888887763
|
| >1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A* | Back alignment and structure |
|---|
Probab=98.61 E-value=3.3e-10 Score=129.78 Aligned_cols=146 Identities=17% Similarity=0.197 Sum_probs=92.8
Q ss_pred CccccceeEEEeCC-------CEEEEEcCCCCcHHHHHHHHhccC----CCCCCeEEECCeecCCcCHHHHhcceEEEcC
Q 000984 399 EQIFSGFSISISSG-------TTAALVGQSGSGKSTVISLIERFY----DPQAGEVLIDGINLKEFQLQWIRKKIGLVSQ 467 (1198)
Q Consensus 399 ~~~l~~i~l~i~~g-------~~~~ivG~~GsGKStl~~~l~g~~----~~~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q 467 (1198)
..+++++++.+++| +.++|+||+|||||||+++|.|++ .+.+|.+..++.++..+-....+..|.+++|
T Consensus 31 ~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~~~l~~~~~~~~~~~v~~iDE 110 (334)
T 1in4_A 31 ENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAAILTSLERGDVLFIDE 110 (334)
T ss_dssp HHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSHHHHHHHHHHCCTTCEEEEET
T ss_pred HHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCHHHHHHHHHHccCCCEEEEcc
Confidence 35899999999877 899999999999999999999998 6677877766655433211111457999999
Q ss_pred CCCCCcccHHHHHhcCCCCCC------HHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhhccCC
Q 000984 468 EPVLFTGSIKDNIAYGKDDAT------TEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDP 541 (1198)
Q Consensus 468 ~~~l~~~ti~~Ni~~~~~~~~------~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal~~~~ 541 (1198)
.+.+.. ++.|++........ ..... +. +...+.. -++.. .......||+|+|||++++
T Consensus 111 ~~~l~~-~~~e~L~~~~~~~~~~i~~~~~~~~---~~--i~~~l~~--~~li~-at~~~~~Ls~~l~sR~~l~------- 174 (334)
T 1in4_A 111 IHRLNK-AVEELLYSAIEDFQIDIMIGKGPSA---KS--IRIDIQP--FTLVG-ATTRSGLLSSPLRSRFGII------- 174 (334)
T ss_dssp GGGCCH-HHHHHHHHHHHTSCCCC--------------------CC--CEEEE-EESCGGGSCHHHHTTCSEE-------
T ss_pred hhhcCH-HHHHHHHHHHHhcccceeeccCccc---cc--ccccCCC--eEEEE-ecCCcccCCHHHHHhcCce-------
Confidence 887765 78887742111110 00000 00 0111111 12211 2233457999999998755
Q ss_pred CEEEEeCCCCCCCHHhHHHHHHHHHHHh
Q 000984 542 RILLLDEATSALDAESEKVVQEALDRIM 569 (1198)
Q Consensus 542 ~illlDe~ts~lD~~~~~~i~~~i~~~~ 569 (1198)
.+||+.+...+.+.+++..
T Consensus 175 ---------~~Ld~~~~~~l~~iL~~~~ 193 (334)
T 1in4_A 175 ---------LELDFYTVKELKEIIKRAA 193 (334)
T ss_dssp ---------EECCCCCHHHHHHHHHHHH
T ss_pred ---------eeCCCCCHHHHHHHHHHHH
Confidence 6788877777777776543
|
| >1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=98.61 E-value=1.8e-10 Score=128.53 Aligned_cols=131 Identities=18% Similarity=0.238 Sum_probs=89.6
Q ss_pred EEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcceEEE
Q 000984 386 LRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLV 465 (1198)
Q Consensus 386 ~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~~v 465 (1198)
++++...|. .+.+++++++++++| ++|+||+|||||||+++|.++.. .|.|.++|.++.+......+++++++
T Consensus 52 l~~l~~~~~---~~~~l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~~--~~~i~~~~~~~~~~~~~~~~~~i~~~ 124 (278)
T 1iy2_A 52 LKEIVEFLK---NPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVGAARVRDL 124 (278)
T ss_dssp HHHHHHHHH---CHHHHHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHHTT--CCEEEEEHHHHHHSTTTHHHHHHHHH
T ss_pred HHHHHHHHH---CHHHHHHcCCCCCCe--EEEECCCcChHHHHHHHHHHHcC--CCEEEecHHHHHHHHhhHHHHHHHHH
Confidence 445555553 245899999999999 99999999999999999999885 79999998776554444455668888
Q ss_pred cCCCC-CC-cccHHHHHh-cCCCCCC-----HHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhh
Q 000984 466 SQEPV-LF-TGSIKDNIA-YGKDDAT-----TEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAI 537 (1198)
Q Consensus 466 ~Q~~~-l~-~~ti~~Ni~-~~~~~~~-----~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal 537 (1198)
+|++. .+ .-++.||+. ++..... .++..+ .+..+ + ..|||||+||..+++|+
T Consensus 125 ~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~---------~~~~l-------l----~~lsgg~~~~~~i~~a~ 184 (278)
T 1iy2_A 125 FETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQ---------TLNQL-------L----VEMDGFEKDTAIVVMAA 184 (278)
T ss_dssp HHHHHTSCSEEEEEETHHHHHCC--------CHHHHH---------HHHHH-------H----HHHTTCCTTCCEEEEEE
T ss_pred HHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHH---------HHHHH-------H----HHHhCCCCCCCEEEEEe
Confidence 88763 33 345667773 3221110 011111 11111 1 13789999999999999
Q ss_pred ccCCCE
Q 000984 538 LKDPRI 543 (1198)
Q Consensus 538 ~~~~~i 543 (1198)
..+|++
T Consensus 185 t~~p~~ 190 (278)
T 1iy2_A 185 TNRPDI 190 (278)
T ss_dssp ESCTTS
T ss_pred cCCchh
Confidence 999876
|
| >4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A* | Back alignment and structure |
|---|
Probab=98.59 E-value=1.7e-08 Score=108.93 Aligned_cols=88 Identities=19% Similarity=0.254 Sum_probs=66.9
Q ss_pred EeeeeEECCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCC-------CCCeEEECCcccCCCChHHH
Q 000984 1045 LHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDP-------DAGHITLDGVEIQKLQLKWL 1117 (1198)
Q Consensus 1045 f~nVsf~Y~~~~~~~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp-------~~G~I~IDG~dI~~i~l~~L 1117 (1198)
++++++.++.- + .+|.+ -|++||.++|+||||||||||++.|.+.+.+ ..|.|++++.+. ..
T Consensus 4 ~~~i~tG~~~L-D-~~l~g---gi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~--~~---- 72 (231)
T 4a74_A 4 IGRISTGSKSL-D-KLLGG---GIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENT--FR---- 72 (231)
T ss_dssp CCEECCSCHHH-H-HHTTS---SEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSC--CC----
T ss_pred CCccCCCChhH-H-hHhcC---CCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCC--CC----
Confidence 45566666421 1 24544 6999999999999999999999999997666 455888988763 11
Q ss_pred HhhcceeccccccccccHHHHHhcCC
Q 000984 1118 RQQMGLVSQEPVLFNDTIRANIAYGK 1143 (1198)
Q Consensus 1118 R~~IsiV~Qdp~LF~gTIreNI~~g~ 1143 (1198)
+++++.++|+..++..|+.+|+.+..
T Consensus 73 ~~~i~~~~~~~~~~~~~~~~~~~~~~ 98 (231)
T 4a74_A 73 PERIREIAQNRGLDPDEVLKHIYVAR 98 (231)
T ss_dssp HHHHHHHHHHTTSCHHHHHHTEEEEE
T ss_pred HHHHHHHHHHcCCCHHHHhhcEEEEe
Confidence 35678888988888889999998863
|
| >2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=98.59 E-value=4.4e-09 Score=109.39 Aligned_cols=54 Identities=20% Similarity=0.393 Sum_probs=49.5
Q ss_pred CCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHhhcceecccc
Q 000984 1071 GKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMGLVSQEP 1128 (1198)
Q Consensus 1071 GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~~i~l~~LR~~IsiV~Qdp 1128 (1198)
|++++|+||+|||||||+++|.++++ ++| |.+||.++.++ ..+|+++++++|+.
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~-~~G-i~~~g~~~~~~--~~~~~~ig~~~~~~ 54 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLK-SSG-VPVDGFYTEEV--RQGGRRIGFDVVTL 54 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHH-HTT-CCCEEEECCEE--ETTSSEEEEEEEET
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcc-cCC-EEEcCEecchh--HhhhceEEEEEEec
Confidence 78999999999999999999999999 999 99999998654 45799999999984
|
| >1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=98.58 E-value=1.6e-09 Score=115.63 Aligned_cols=75 Identities=15% Similarity=0.159 Sum_probs=53.0
Q ss_pred cEEEeeeeEECCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCC--------
Q 000984 1042 EIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQ-------- 1113 (1198)
Q Consensus 1042 ~I~f~nVsf~Y~~~~~~~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~~i~-------- 1113 (1198)
.|+++|+...|. . +|++++ +.++|+||||||||||+++|.+++.|++|.|.++|.++...+
T Consensus 9 ~l~l~~~~~~~~----~------~~~~~~-~~~~i~GpnGsGKSTll~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 77 (227)
T 1qhl_A 9 SLTLINWNGFFA----R------TFDLDE-LVTTLSGGNGAGKSTTMAAFVTALIPDLTLLHFRNTTEAGATSGSRDKGL 77 (227)
T ss_dssp EEEEEEETTEEE----E------EECHHH-HHHHHHSCCSHHHHHHHHHHHHHHSCCTTTC------------------C
T ss_pred EEEEEeeecccC----C------EEEEcC-cEEEEECCCCCCHHHHHHHHhcccccCCCeEEECCEEcccCCccccccch
Confidence 488999876552 1 466666 899999999999999999999999999999999999984433
Q ss_pred hHHHHhhcceeccc
Q 000984 1114 LKWLRQQMGLVSQE 1127 (1198)
Q Consensus 1114 l~~LR~~IsiV~Qd 1127 (1198)
...+|.++++|+|+
T Consensus 78 ~~~~~~~i~~v~~~ 91 (227)
T 1qhl_A 78 HGKLKAGVCYSMLD 91 (227)
T ss_dssp GGGBCSSEEEEEEE
T ss_pred hhHhhcCcEEEEEe
Confidence 23357789999986
|
| >1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A* | Back alignment and structure |
|---|
Probab=98.57 E-value=1.9e-10 Score=126.56 Aligned_cols=137 Identities=19% Similarity=0.247 Sum_probs=91.7
Q ss_pred EEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcceEE
Q 000984 385 ELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGL 464 (1198)
Q Consensus 385 ~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~~ 464 (1198)
+++++...|. .+.+++++++++++| ++|+||+|||||||+++|.++.. .|.+.++|.++.+......++.+++
T Consensus 27 ~l~~l~~~~~---~~~~~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~~--~~~i~~~~~~~~~~~~~~~~~~i~~ 99 (254)
T 1ixz_A 27 ELKEIVEFLK---NPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVGAARVRD 99 (254)
T ss_dssp HHHHHHHHHH---CHHHHHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHHTT--CCEEEEEHHHHHHSCTTHHHHHHHH
T ss_pred HHHHHHHHHH---CHHHHHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHHhC--CCEEEeeHHHHHHHHhhHHHHHHHH
Confidence 4456655563 245899999999999 99999999999999999999875 7899999877654444444566778
Q ss_pred EcCCCC-CC-cccHHHHHh-cCCCCCC-----HHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHh
Q 000984 465 VSQEPV-LF-TGSIKDNIA-YGKDDAT-----TEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARA 536 (1198)
Q Consensus 465 v~Q~~~-l~-~~ti~~Ni~-~~~~~~~-----~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARa 536 (1198)
++|++. .+ .-++.||+. ++..... .++..+.. .+.+ ..|||||+||..+++|
T Consensus 100 ~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~-----~~ll---------------~~l~g~~~~~~~i~~a 159 (254)
T 1ixz_A 100 LFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTL-----NQLL---------------VEMDGFEKDTAIVVMA 159 (254)
T ss_dssp HHHHHTTSSSEEEEEETHHHHHC---------CHHHHHHH-----HHHH---------------HHHHTCCTTCCEEEEE
T ss_pred HHHHHHhcCCeEEEehhhhhhhcccCccccccchHHHHHH-----HHHH---------------HHHhCCCCCCCEEEEE
Confidence 888753 22 345666663 2211110 01111111 1111 1367999999999999
Q ss_pred hccCCCEEEEeCCC
Q 000984 537 ILKDPRILLLDEAT 550 (1198)
Q Consensus 537 l~~~~~illlDe~t 550 (1198)
+..+|++ ||+++
T Consensus 160 ~t~~p~~--ld~~l 171 (254)
T 1ixz_A 160 ATNRPDI--LDPAL 171 (254)
T ss_dssp EESCGGG--SCGGG
T ss_pred ccCCchh--CCHHH
Confidence 9999986 56554
|
| >3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A* | Back alignment and structure |
|---|
Probab=98.55 E-value=2.5e-08 Score=114.12 Aligned_cols=106 Identities=20% Similarity=0.256 Sum_probs=74.7
Q ss_pred eeeeEECCCCCCccccccceE-------EeeCCCEEEEEcCCCCCHHHHHHHHhcccCCC-CCeEEECCcccCCCChHHH
Q 000984 1046 HHVSFKYPSRPDVQVFRDLNL-------KIRAGKTVALVGESGSGKSTVVSLLQRFYDPD-AGHITLDGVEIQKLQLKWL 1117 (1198)
Q Consensus 1046 ~nVsf~Y~~~~~~~vL~~is~-------~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~-~G~I~IDG~dI~~i~l~~L 1117 (1198)
.+++|+|... ..+.|+++.+ .+.+|+.++|+|||||||||++++|+++++|+ +|.|...+.++ ++. +
T Consensus 92 ~~~~iR~~~~-~~~~l~~lg~~~~l~~l~~~~~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~-e~~---~ 166 (356)
T 3jvv_A 92 AGAVFRTIPS-KVLTMEELGMGEVFKRVSDVPRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPI-EFV---H 166 (356)
T ss_dssp EEEEEEEECC-SCCCTTTTTCCHHHHHHHHCSSEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSC-CSC---C
T ss_pred cEEEEEECCC-CCCCHHHcCChHHHHHHHhCCCCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcH-Hhh---h
Confidence 5788898543 4467888887 78899999999999999999999999999997 56666554444 333 3
Q ss_pred Hhhcceeccccccc-----cccHHHHHhcCCC----CCCCHHHHHHHH
Q 000984 1118 RQQMGLVSQEPVLF-----NDTIRANIAYGKG----GDATEAEIQAAS 1156 (1198)
Q Consensus 1118 R~~IsiV~Qdp~LF-----~gTIreNI~~g~~----~~~tdeei~~Al 1156 (1198)
+...++|+|.+.-. ...|+.-|+..+. ++.+|.|..+.+
T Consensus 167 ~~~~~~v~q~~~~~~~~~~~~~La~aL~~~PdvillDEp~d~e~~~~~ 214 (356)
T 3jvv_A 167 ESKKCLVNQREVHRDTLGFSEALRSALREDPDIILVGEMRDLETIRLA 214 (356)
T ss_dssp CCSSSEEEEEEBTTTBSCHHHHHHHHTTSCCSEEEESCCCSHHHHHHH
T ss_pred hccccceeeeeeccccCCHHHHHHHHhhhCcCEEecCCCCCHHHHHHH
Confidence 45677888876533 3345555554421 256777766553
|
| >3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=98.55 E-value=1.4e-08 Score=107.42 Aligned_cols=72 Identities=11% Similarity=0.104 Sum_probs=55.6
Q ss_pred eEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcceEEEcCCCCCCc-ccHHHHHh
Q 000984 406 SISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFT-GSIKDNIA 481 (1198)
Q Consensus 406 ~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~~-~ti~~Ni~ 481 (1198)
|+++++|++++|+||||||||||+++|.|+++ .+.+++.++........+..++|++|++..|. .++.+|+.
T Consensus 1 s~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (205)
T 3tr0_A 1 SNAMNKANLFIISAPSGAGKTSLVRALVKALA----EIKISISHTTRPKRPGDQEGVDYFFIDETRFQAMVKEGAFL 73 (205)
T ss_dssp ----CCCCEEEEECCTTSCHHHHHHHHHHHSS----SEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHHTCEE
T ss_pred CCcCCCCcEEEEECcCCCCHHHHHHHHHhhCC----CeEEeceeccCCCchhHhcCceEEeccHHHHHHHHhcCcEE
Confidence 56788999999999999999999999999973 68888877766655555778999999998775 35555554
|
| >2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ... | Back alignment and structure |
|---|
Probab=98.54 E-value=1.9e-07 Score=106.80 Aligned_cols=35 Identities=23% Similarity=0.279 Sum_probs=28.7
Q ss_pred EEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCe
Q 000984 408 SISSGTTAALVGQSGSGKSTVISLIERFYDPQAGE 442 (1198)
Q Consensus 408 ~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~ 442 (1198)
-+++|+.+.|.||+|||||||+..++.......|.
T Consensus 57 Gl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~ 91 (349)
T 2zr9_A 57 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGI 91 (349)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCC
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCe
Confidence 47899999999999999999988888665444443
|
| >2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A* | Back alignment and structure |
|---|
Probab=98.52 E-value=1.5e-08 Score=113.85 Aligned_cols=84 Identities=21% Similarity=0.253 Sum_probs=35.6
Q ss_pred eeeeEECCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcc-cCCCCCeEEECCcccCCCChHHHHhhccee
Q 000984 1046 HHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRF-YDPDAGHITLDGVEIQKLQLKWLRQQMGLV 1124 (1198)
Q Consensus 1046 ~nVsf~Y~~~~~~~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~-ydp~~G~I~IDG~dI~~i~l~~LR~~IsiV 1124 (1198)
+|++..|.. ..+++|++|+| +|||++|+|||||++.|++. ..|++| |.++|.++.. +. . ++.++++
T Consensus 2 ~~l~~~~~~---~~~l~~~~~~I------~lvG~nG~GKSTLl~~L~g~~~~~~~g-i~~~g~~~~~-t~-~-~~~~~~~ 68 (301)
T 2qnr_A 2 SNLPNQVHR---KSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPERV-ISGAAEKIER-TV-Q-IEASTVE 68 (301)
T ss_dssp -------------------CEEE------EEEEETTSSHHHHHHHHHC----------------------------CEEE
T ss_pred CCCcceECC---EEEEcCCCEEE------EEECCCCCCHHHHHHHHhCCCccCCCC-cccCCcccCC-cc-e-EeeEEEE
Confidence 478888963 35999999998 99999999999999999997 788899 9999988754 22 1 4678999
Q ss_pred ccccccc-cccHHHHHhcC
Q 000984 1125 SQEPVLF-NDTIRANIAYG 1142 (1198)
Q Consensus 1125 ~Qdp~LF-~gTIreNI~~g 1142 (1198)
+|++-++ .-||.||..+|
T Consensus 69 ~q~~~~~~~ltv~Dt~g~~ 87 (301)
T 2qnr_A 69 IEERGVKLRLTVVDTPGYG 87 (301)
T ss_dssp EC---CCEEEEEEEEC---
T ss_pred ecCCCcccCcchhhhhhhh
Confidence 9987654 55899988775
|
| >1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=98.52 E-value=7e-11 Score=136.27 Aligned_cols=166 Identities=17% Similarity=0.174 Sum_probs=104.6
Q ss_pred EEeCCCEEEEEcCCCCcHHHHHHHHhc------------cCCCCCCeEEECCeecCCcCH-HHHhcce---EEEcCCCCC
Q 000984 408 SISSGTTAALVGQSGSGKSTVISLIER------------FYDPQAGEVLIDGINLKEFQL-QWIRKKI---GLVSQEPVL 471 (1198)
Q Consensus 408 ~i~~g~~~~ivG~~GsGKStl~~~l~g------------~~~~~~G~i~i~g~~~~~~~~-~~~r~~i---~~v~Q~~~l 471 (1198)
.+++|.+++|+|++|+|||||+++|.| ..+|+.|.+.++|..+..+.. ..-++.+ .++.+.|-+
T Consensus 16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl 95 (392)
T 1ni3_A 16 RPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGL 95 (392)
T ss_dssp SSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGG
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEecccc
Confidence 457899999999999999999999999 567899999998743211100 0001122 366677765
Q ss_pred Ccc-cHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchh----cCCCCCCChHHHHHHhHHHhhccCC--CEE
Q 000984 472 FTG-SIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLV----GEHGTQLSGGQKQRIAIARAILKDP--RIL 544 (1198)
Q Consensus 472 ~~~-ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v----~~~g~~lSgGqkqri~lARal~~~~--~il 544 (1198)
..+ |..+++ . ......++.+ +..-..+ ......++|+. +| +++
T Consensus 96 ~~~~s~~e~L-------~-~~fl~~ir~~----------d~il~Vvd~~~d~~i~~v~~~~------------dP~~di~ 145 (392)
T 1ni3_A 96 TKGASTGVGL-------G-NAFLSHVRAV----------DAIYQVVRAFDDAEIIHVEGDV------------DPIRDLS 145 (392)
T ss_dssp CCCCCSSSSS-------C-HHHHHHHTTC----------SEEEEEEECCCTTCSSCCSSSS------------CHHHHHH
T ss_pred ccCCcHHHHH-------H-HHHHHHHHHH----------HHHHHHHhccccceeeeecccc------------Ccchhhh
Confidence 532 222211 1 1111111111 1111111 12223345442 88 999
Q ss_pred EEeCCCCCCCHHhHHHHHHHHHHH-hC-CCeEEEEecCcchhhc-cCEEE-EEeCC-EEEEecChh
Q 000984 545 LLDEATSALDAESEKVVQEALDRI-MV-NRTTVIVAHRLSTVRN-ADMIA-VIHRG-KIVEKGTHS 605 (1198)
Q Consensus 545 llDe~ts~lD~~~~~~i~~~i~~~-~~-~~t~i~itH~~~~~~~-~d~i~-~l~~G-~i~~~g~~~ 605 (1198)
++|||++.+|++..+...+.+... .+ ++|+ ++|.+..+.. ||++. +|++| +++..|+.+
T Consensus 146 ildeel~~~D~~~~~k~~~~l~~~~~~~g~ti--~sh~~~~~~~l~~~i~~~L~~G~~~~~~~~~~ 209 (392)
T 1ni3_A 146 IIVDELLIKDAEFVEKHLEGLRKITSRGANTL--EMKAKKEEQAIIEKVYQYLTETKQPIRKGDWS 209 (392)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCCSSCSS--SHHHHHHHHHHHHHHHHHHHTTCSCGGGSCCC
T ss_pred hchhhhHHHHHHHHHHHHHHHHHHHHhcCCcc--ccccHHHHHHHHHHHHHHhccCCceeecCCCC
Confidence 999999999999887777777765 43 4554 3999887765 89999 99999 887666543
|
| >2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.51 E-value=1.6e-08 Score=112.10 Aligned_cols=115 Identities=17% Similarity=0.226 Sum_probs=82.3
Q ss_pred cccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHhhcceecccc-ccc-cccHH
Q 000984 1059 QVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMGLVSQEP-VLF-NDTIR 1136 (1198)
Q Consensus 1059 ~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~~i~l~~LR~~IsiV~Qdp-~LF-~gTIr 1136 (1198)
.+++++++++++| ++|+||+|||||||+++|.+...+ |.|.++|.++.+......+++++.++|++ .++ .-++.
T Consensus 34 ~~l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~~~--~~i~i~g~~l~~~~~~~~~~~i~~vf~~a~~~~p~i~~~ 109 (274)
T 2x8a_A 34 DQFKALGLVTPAG--VLLAGPPGCGKTLLAKAVANESGL--NFISVKGPELLNMYVGESERAVRQVFQRAKNSAPCVIFF 109 (274)
T ss_dssp HHHHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHHTTC--EEEEEETTTTCSSTTHHHHHHHHHHHHHHHHTCSEEEEE
T ss_pred HHHHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHHcCC--CEEEEEcHHHHhhhhhHHHHHHHHHHHHHHhcCCCeEee
Confidence 4899999999999 999999999999999999999887 79999999998877788889999999996 333 33677
Q ss_pred HHHhcCCCCCCCHHHHHHHHHHcchHHHHHhccccccceeeeee
Q 000984 1137 ANIAYGKGGDATEAEIQAASEMANAHKFICSLQQVRTSRLLLVM 1180 (1198)
Q Consensus 1137 eNI~~g~~~~~tdeei~~Al~~A~l~dfI~~LP~g~dt~v~~~~ 1180 (1198)
|||+.... ...+++. .+. .--.+.++..|..|-...+.+++
T Consensus 110 Deid~~~~-~r~~~~~-~~~-~~~~~~~l~~Lsgg~~~~~~i~i 150 (274)
T 2x8a_A 110 DEVDALCP-RRSDRET-GAS-VRVVNQLLTEMDGLEARQQVFIM 150 (274)
T ss_dssp ETCTTTCC-----------C-TTHHHHHHHHHHTCCSTTCEEEE
T ss_pred ehhhhhhc-ccCCCcc-hHH-HHHHHHHHHhhhcccccCCEEEE
Confidence 88875321 1111111 111 11135566677666555555444
|
| >2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A* | Back alignment and structure |
|---|
Probab=98.50 E-value=1e-08 Score=121.74 Aligned_cols=159 Identities=21% Similarity=0.254 Sum_probs=93.4
Q ss_pred ceeEEEeCCCEEEEEcCCCCcHHHHHHHHhc--cCCCCCCeEEECCeecCCcCHHHHhcceEEEcCCCCCCcccHHHHHh
Q 000984 404 GFSISISSGTTAALVGQSGSGKSTVISLIER--FYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIA 481 (1198)
Q Consensus 404 ~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g--~~~~~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~Ni~ 481 (1198)
.+++++.++..++|.|+|||||||+++.|.. ++.+..|++.+.+.|.+......+. .-|+++. +|.+|
T Consensus 159 pv~ldL~~~pHlLIaG~TGSGKSt~L~~li~sLl~~~~p~~v~l~liDpK~~el~~~~-------~lPhl~~-~Vvtd-- 228 (512)
T 2ius_A 159 PVVADLAKMPHLLVAGTTGSGASVGVNAMILSMLYKAQPEDVRFIMIDPKMLELSVYE-------GIPHLLT-EVVTD-- 228 (512)
T ss_dssp EEEEEGGGSCSEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECCSSSGGGGGT-------TCTTBSS-SCBCS--
T ss_pred EEEEEcccCceEEEECCCCCCHHHHHHHHHHHHHHhCCCceEEEEEECCchhhhhhhc-------cCCcccc-eeecC--
Confidence 4788899999999999999999999999886 5666778888888887765444332 1233321 11011
Q ss_pred cCCCCCCHHHHHHHHHH-----hcHHHHHHhCCCCccchhcCC---CCCCChHHHHHH----------hHHHhhccCCC-
Q 000984 482 YGKDDATTEEIRVATEL-----ANAAKFIDKLPQGIDTLVGEH---GTQLSGGQKQRI----------AIARAILKDPR- 542 (1198)
Q Consensus 482 ~~~~~~~~~~~~~~~~~-----~~~~~~i~~l~~g~~t~v~~~---g~~lSgGqkqri----------~lARal~~~~~- 542 (1198)
.++..++++. ..-.+.+... |....-+-+ ...+|+||+|+. ++|+++...|.
T Consensus 229 -------~~~a~~~L~~~~~EmerR~~ll~~~--Gv~~i~~yn~~~~~~~s~G~~~~~~~~~pg~~~~~~a~~l~~lP~i 299 (512)
T 2ius_A 229 -------MKDAANALRWCVNEMERRYKLMSAL--GVRNLAGYNEKIAEADRMMRPIPDPYWKPGDSMDAQHPVLKKEPYI 299 (512)
T ss_dssp -------HHHHHHHHHHHHHHHHHHHHHHHHT--TCSSHHHHHHHHHHHHHTTCCCBCTTC---------CCBCCCCCEE
T ss_pred -------HHHHHHHHHHHHHHHHHHHHHHHHc--CCccHHHHHHHHHHHhhcCCcccccccccccchhccccccccCCcE
Confidence 1111111110 0001122221 222111100 113678887752 46788888998
Q ss_pred EEEEeCCCCCCCHHhHHHHHHHHHHH---h--CCCeEEEEecCcc
Q 000984 543 ILLLDEATSALDAESEKVVQEALDRI---M--VNRTTVIVAHRLS 582 (1198)
Q Consensus 543 illlDe~ts~lD~~~~~~i~~~i~~~---~--~~~t~i~itH~~~ 582 (1198)
++++||+++.+|... +.+.+.+..+ . .+.++|++|||++
T Consensus 300 vlvIDE~~~ll~~~~-~~~~~~l~~Lar~gRa~GI~LIlaTQrp~ 343 (512)
T 2ius_A 300 VVLVDEFADLMMTVG-KKVEELIARLAQKARAAGIHLVLATQRPS 343 (512)
T ss_dssp EEEEETHHHHHHHHH-HHHHHHHHHHHHHCGGGTEEEEEEESCCC
T ss_pred EEEEeCHHHHHhhhh-HHHHHHHHHHHHHhhhCCcEEEEEecCCc
Confidence 889999999888432 3344444332 1 2669999999987
|
| >1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1 | Back alignment and structure |
|---|
Probab=98.50 E-value=1e-08 Score=116.24 Aligned_cols=71 Identities=15% Similarity=0.171 Sum_probs=63.3
Q ss_pred CEEEEEcCCCCCHHHHHHHHhccc--------CCCCCeEEECCcccCCCC---------------hHHHHhhccee---c
Q 000984 1072 KTVALVGESGSGKSTVVSLLQRFY--------DPDAGHITLDGVEIQKLQ---------------LKWLRQQMGLV---S 1125 (1198)
Q Consensus 1072 ekvaIVG~SGSGKSTL~~lL~R~y--------dp~~G~I~IDG~dI~~i~---------------l~~LR~~IsiV---~ 1125 (1198)
+.++|+|++||||||+++.|++++ .|+.|+|.|||.++...+ ..++++.++.+ +
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d~G~i~idg~~l~~~~~~~~el~~gCicc~~~~~~~~~l~~l~~~~ 84 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLIGDRATQIKTLTNGCICCSRSNELEDALLDLLDNL 84 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSSCCSCCEEEEEECTTSCEEEEETTSCEEECTTSCHHHHHHHHHHHH
T ss_pred cEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEecCcccCccHHHHhCCCCCEEEECCCceEEcccHHHHHHHHHHHhHH
Confidence 589999999999999999999998 789999999999998774 46788999988 7
Q ss_pred cccc-cccccHHHHHhcC
Q 000984 1126 QEPV-LFNDTIRANIAYG 1142 (1198)
Q Consensus 1126 Qdp~-LF~gTIreNI~~g 1142 (1198)
|++. .|+.++.||+.++
T Consensus 85 q~~~~~~~~~v~E~~~l~ 102 (318)
T 1nij_A 85 DKGNIQFDRLVIECTGMA 102 (318)
T ss_dssp HHTSCCCSEEEEEEETTC
T ss_pred hcCCCCCCEEEEeCCCCC
Confidence 9886 4799999999776
|
| >1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=98.48 E-value=3.9e-09 Score=112.63 Aligned_cols=75 Identities=12% Similarity=0.132 Sum_probs=50.8
Q ss_pred cEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCH-------
Q 000984 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQL------- 455 (1198)
Q Consensus 383 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~------- 455 (1198)
.++++|++..|. . ++++.+ ++++|+||||||||||+++|.|++.|++|.|.++|.++...+.
T Consensus 9 ~l~l~~~~~~~~----~------~~~~~~-~~~~i~GpnGsGKSTll~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 77 (227)
T 1qhl_A 9 SLTLINWNGFFA----R------TFDLDE-LVTTLSGGNGAGKSTTMAAFVTALIPDLTLLHFRNTTEAGATSGSRDKGL 77 (227)
T ss_dssp EEEEEEETTEEE----E------EECHHH-HHHHHHSCCSHHHHHHHHHHHHHHSCCTTTC------------------C
T ss_pred EEEEEeeecccC----C------EEEEcC-cEEEEECCCCCCHHHHHHHHhcccccCCCeEEECCEEcccCCccccccch
Confidence 477888765542 1 466666 8999999999999999999999999999999999988743322
Q ss_pred -HHHhcceEEEcCC
Q 000984 456 -QWIRKKIGLVSQE 468 (1198)
Q Consensus 456 -~~~r~~i~~v~Q~ 468 (1198)
...+..++|++|+
T Consensus 78 ~~~~~~~i~~v~~~ 91 (227)
T 1qhl_A 78 HGKLKAGVCYSMLD 91 (227)
T ss_dssp GGGBCSSEEEEEEE
T ss_pred hhHhhcCcEEEEEe
Confidence 2235678999883
|
| >3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus} | Back alignment and structure |
|---|
Probab=98.48 E-value=6.9e-09 Score=128.37 Aligned_cols=157 Identities=14% Similarity=0.161 Sum_probs=97.5
Q ss_pred CccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCC-CeEEECCeecCCcCHHHHhcceEEEcCCC--------
Q 000984 399 EQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQA-GEVLIDGINLKEFQLQWIRKKIGLVSQEP-------- 469 (1198)
Q Consensus 399 ~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~-G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~-------- 469 (1198)
..+++++++.+++|+.++|+||+|||||||+++|.+++++.. |.+.+++.+.... ...++++||..
T Consensus 47 ~~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~~~~~~~-----~p~i~~~p~g~~~~~~e~~ 121 (604)
T 3k1j_A 47 EHAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPNPEDEN-----MPRIKTVPACQGRRIVEKY 121 (604)
T ss_dssp HHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEECCTTCTT-----SCEEEEEETTHHHHHHHHH
T ss_pred hhhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeCCccccc-----CCcEEEEecchHHHHHHHH
Confidence 458899999999999999999999999999999999998887 7888877655433 34688887754
Q ss_pred --------------CCC-cccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHH
Q 000984 470 --------------VLF-TGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIA 534 (1198)
Q Consensus 470 --------------~l~-~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lA 534 (1198)
|.+ ..++.+|+..+........+... ......+.+.. ++.. ......+|+|++|++..+
T Consensus 122 ~~~~~~~~~~r~~~~~~~~~~~~~nl~v~~~~~~~~~~v~~-~~~~~~~L~G~----~~~~-~~~~g~~~~g~~~~i~~g 195 (604)
T 3k1j_A 122 REKAKSQESVKSSNMRLKSTVLVPKLLVDNCGRTKAPFIDA-TGAHAGALLGD----VRHD-PFQSGGLGTPAHERVEPG 195 (604)
T ss_dssp HHHHHHHTCC-----------CCCEEEECCTTCSSCCEEEC-TTCCHHHHHCE----ECCC-CC----CCCCGGGGEECC
T ss_pred HHhhccchhhhhhcccccccccccceeeccccCCCCCEEEc-CCCCHHhcCce----EEec-hhhcCCccccccccccCc
Confidence 112 12233333221100000000000 00001111111 1110 112235999999999999
Q ss_pred HhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHH
Q 000984 535 RAILKDPRILLLDEATSALDAESEKVVQEALDR 567 (1198)
Q Consensus 535 Ral~~~~~illlDe~ts~lD~~~~~~i~~~i~~ 567 (1198)
+....++.+|+|||.-. |++.....+.+.+.+
T Consensus 196 ~~~~a~~gvL~LDEi~~-l~~~~q~~Ll~~Le~ 227 (604)
T 3k1j_A 196 MIHRAHKGVLFIDEIAT-LSLKMQQSLLTAMQE 227 (604)
T ss_dssp HHHHTTTSEEEETTGGG-SCHHHHHHHHHHHHH
T ss_pred eeeecCCCEEEEechhh-CCHHHHHHHHHHHHc
Confidence 99999999999999987 787766666666543
|
| >1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B* | Back alignment and structure |
|---|
Probab=98.47 E-value=2e-08 Score=104.97 Aligned_cols=141 Identities=21% Similarity=0.222 Sum_probs=74.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhccCCC-----------CCCeEEECCeecCC--cCHHHHhcceEEEcCCCCCCcc--cHHH
Q 000984 414 TAALVGQSGSGKSTVISLIERFYDP-----------QAGEVLIDGINLKE--FQLQWIRKKIGLVSQEPVLFTG--SIKD 478 (1198)
Q Consensus 414 ~~~ivG~~GsGKStl~~~l~g~~~~-----------~~G~i~i~g~~~~~--~~~~~~r~~i~~v~Q~~~l~~~--ti~~ 478 (1198)
+++|+|++|||||||++.+.|...+ ..|+|.++|.++.- ++....++..++++|...-..+ ++.|
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d 110 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGALLVYD 110 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTCCEEEEEEE
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcCCEEEEEEE
Confidence 7899999999999999999998754 46889999976431 1111111122233221100000 0111
Q ss_pred HHhcCCCCCCHHHHHHHHHHhcHHHHHHh-CCCCcc-chhcCCCCCCChHHHHHHhHHHhhccCCCEEEEeCCCCCCCHH
Q 000984 479 NIAYGKDDATTEEIRVATELANAAKFIDK-LPQGID-TLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAE 556 (1198)
Q Consensus 479 Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~-l~~g~~-t~v~~~g~~lSgGqkqri~lARal~~~~~illlDe~ts~lD~~ 556 (1198)
+ .+.......... .+.+.. -+...- ..++.+ ..|..-..+....||++..+|+++++| ||++|..
T Consensus 111 ~-------~~~~s~~~~~~~---~~~~~~~~~~~~~i~~v~nK-~Dl~~~~~~~~~~a~~l~~~~~~~~ld--~Sald~~ 177 (191)
T 1oix_A 111 I-------AKHLTYENVERW---LKELRDHADSNIVIMLVGNK-SDLRHLRAVPTDEARAFAEKNGLSFIE--TSALDST 177 (191)
T ss_dssp T-------TCHHHHHTHHHH---HHHHHHHSCTTCEEEEEEEC-GGGGGGCCSCHHHHHHHHHHTTCEEEE--CCTTTCT
T ss_pred C-------cCHHHHHHHHHH---HHHHHHhcCCCCcEEEEEEC-cccccccccCHHHHHHHHHHcCCEEEE--EeCCCCC
Confidence 0 111111110000 001111 011110 112221 122222233477899999999999999 9999999
Q ss_pred hHHHHHHHHHH
Q 000984 557 SEKVVQEALDR 567 (1198)
Q Consensus 557 ~~~~i~~~i~~ 567 (1198)
....+.+.+.+
T Consensus 178 ~v~~l~~~l~~ 188 (191)
T 1oix_A 178 NVEAAFQTILT 188 (191)
T ss_dssp THHHHHHHHHH
T ss_pred CHHHHHHHHHH
Confidence 88877777654
|
| >1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=98.46 E-value=6e-08 Score=110.28 Aligned_cols=91 Identities=16% Similarity=0.205 Sum_probs=72.4
Q ss_pred cEEEeeeeEECCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcc---------------------------
Q 000984 1042 EIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRF--------------------------- 1094 (1198)
Q Consensus 1042 ~I~f~nVsf~Y~~~~~~~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~--------------------------- 1094 (1198)
.|+++|. .+|. ++++|++.+| .++|||++|||||||+.+|..+
T Consensus 5 ~L~i~nf-r~~~--------~~~~l~~~~g-~~~i~G~NGsGKS~ll~ai~~llg~~~~~s~r~~~~~~li~~g~~~~~~ 74 (322)
T 1e69_A 5 KLYLKGF-KSFG--------RPSLIGFSDR-VTAIVGPNGSGKSNIIDAIKWVFGEQSKKELRASEKFDMIFAGSENLPP 74 (322)
T ss_dssp EEEEESB-TTBC--------SCEEEECCSS-EEEEECCTTTCSTHHHHHHHHTSCC----------CCTTBCCCBTTBCC
T ss_pred EEEEeCc-eeec--------CCeEEecCCC-cEEEECCCCCcHHHHHHHHHHHhCCCchhhcccccHHHhhccCccCCCC
Confidence 4777772 2342 3578888999 9999999999999999999833
Q ss_pred -----------------------cCCCCCeEEECCcccCCCChHHHHhhcceeccccccc-cccHHHHHhcC
Q 000984 1095 -----------------------YDPDAGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLF-NDTIRANIAYG 1142 (1198)
Q Consensus 1095 -----------------------ydp~~G~I~IDG~dI~~i~l~~LR~~IsiV~Qdp~LF-~gTIreNI~~g 1142 (1198)
+.+.+|.+++||.+++.-++..++..+++.||+..++ .|+|.+|+..+
T Consensus 75 ~~~~~v~~~f~~~~~~~~i~r~~~~~~~~~~~ing~~~~~~~~~~~~~~~g~~~~~~~lv~qg~i~~~~~~~ 146 (322)
T 1e69_A 75 AGSAYVELVFEENGEEITVARELKRTGENTYYLNGSPVRLKDIRDRFAGTGLGVDFYSIVGQGQIDRIVNAS 146 (322)
T ss_dssp CSEEEEEEEEESSSCEEEEEEEEETTSCEEEEETTEEECHHHHHHHTTTSSTTTTCCSEEEHHHHHHHHTC-
T ss_pred CceEEEEEEEEeCCeEEEEEEEEEcCCceEEEECCcCccHHHHHHHHHHcCCChhheeeEehhhHHHHHhcc
Confidence 3445679999999986666777777899999998765 99999999765
|
| >2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=98.46 E-value=7.8e-08 Score=104.78 Aligned_cols=167 Identities=14% Similarity=0.127 Sum_probs=84.4
Q ss_pred ccccce-eEEEeCCCEEEEEcCCCCcHHHHHHHHh-ccCCCCCCeEEECCeecCCcCHHHHh---cceEEEcCCCCCCcc
Q 000984 400 QIFSGF-SISISSGTTAALVGQSGSGKSTVISLIE-RFYDPQAGEVLIDGINLKEFQLQWIR---KKIGLVSQEPVLFTG 474 (1198)
Q Consensus 400 ~~l~~i-~l~i~~g~~~~ivG~~GsGKStl~~~l~-g~~~~~~G~i~i~g~~~~~~~~~~~r---~~i~~v~Q~~~l~~~ 474 (1198)
+.|+.+ .--+++|+.++|+||+|||||||+..++ +..+...+.+.+++.. +...++ .++++.+|+...
T Consensus 10 ~~LD~~l~gGl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e~----~~~~~~~~~~~~g~~~~~~~~--- 82 (247)
T 2dr3_A 10 PGVDEILHGGIPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALEE----HPVQVRQNMAQFGWDVKPYEE--- 82 (247)
T ss_dssp TTHHHHTTTSEETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESSS----CHHHHHHHHHTTTCCCHHHHH---
T ss_pred hhHHHHcCCCCCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccC----CHHHHHHHHHHcCCCHHHHhh---
Confidence 356655 5578999999999999999999965554 4443333444444321 222222 223333332100
Q ss_pred cHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhhc--cCCCEEEEeCCCCC
Q 000984 475 SIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAIL--KDPRILLLDEATSA 552 (1198)
Q Consensus 475 ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal~--~~~~illlDe~ts~ 552 (1198)
.+|+.+... .. . .+..++. .+..+.+. +....+....++.++ .+|+++++|++++-
T Consensus 83 --~~~l~~~~~-~~-~-------------~~~~~~~-~~~~~~~~----~~~~~~~~~~i~~~~~~~~~~~vviD~~~~l 140 (247)
T 2dr3_A 83 --KGMFAMVDA-FT-A-------------GIGKSKE-YEKYIVHD----LTDIREFIEVLRQAIRDINAKRVVVDSVTTL 140 (247)
T ss_dssp --HTSEEEEEC-ST-T-------------TTCC--C-CCSCBCSC----CSSHHHHHHHHHHHHHHHTCCEEEEETSGGG
T ss_pred --CCcEEEEec-ch-h-------------hcccccc-cccccccC----ccCHHHHHHHHHHHHHHhCCCEEEECCchHh
Confidence 001110000 00 0 0000000 00000011 122333344444444 47999999999998
Q ss_pred C--CHHhHHHHHHHHHHHh--CCCeEEEEecCcch--------h-hccCEEEEEeC
Q 000984 553 L--DAESEKVVQEALDRIM--VNRTTVIVAHRLST--------V-RNADMIAVIHR 595 (1198)
Q Consensus 553 l--D~~~~~~i~~~i~~~~--~~~t~i~itH~~~~--------~-~~~d~i~~l~~ 595 (1198)
+ |+...+.+...+.+.. .++|+|+++|.... + ..||.|+.|+.
T Consensus 141 ~~~~~~~~~~~l~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~D~vi~L~~ 196 (247)
T 2dr3_A 141 YINKPAMARSIILQLKRVLAGTGCTSIFVSQVSVGERGFGGPGVEHGVDGIIRLDL 196 (247)
T ss_dssp TTTCGGGHHHHHHHHHHHHHHTTCEEEEEEECC----CCC-CCHHHHSSEEEEEEE
T ss_pred hcCCHHHHHHHHHHHHHHHHHCCCeEEEEecCCCCcccccccccceeEEEEEEEEE
Confidence 7 5433333333343332 47899999998754 2 45899999965
|
| >4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A* | Back alignment and structure |
|---|
Probab=98.46 E-value=2.4e-08 Score=102.45 Aligned_cols=29 Identities=41% Similarity=0.517 Sum_probs=27.4
Q ss_pred cceEEeeCCCEEEEEcCCCCCHHHHHHHH
Q 000984 1063 DLNLKIRAGKTVALVGESGSGKSTVVSLL 1091 (1198)
Q Consensus 1063 ~is~~I~~GekvaIVG~SGSGKSTL~~lL 1091 (1198)
||||++++||.++|+||||||||||++++
T Consensus 1 ~vsl~i~~gei~~l~G~nGsGKSTl~~~~ 29 (171)
T 4gp7_A 1 SMKLTIPELSLVVLIGSSGSGKSTFAKKH 29 (171)
T ss_dssp CEEEEEESSEEEEEECCTTSCHHHHHHHH
T ss_pred CccccCCCCEEEEEECCCCCCHHHHHHHH
Confidence 68999999999999999999999999953
|
| >2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=98.42 E-value=5.6e-08 Score=102.88 Aligned_cols=85 Identities=14% Similarity=0.171 Sum_probs=53.7
Q ss_pred EEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHhhcceecccc-----------cccccc
Q 000984 1066 LKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMGLVSQEP-----------VLFNDT 1134 (1198)
Q Consensus 1066 ~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~~i~l~~LR~~IsiV~Qdp-----------~LF~gT 1134 (1198)
++|++|+.++|+|++||||||++++|.+++.|+.| +.+ +...+... ...+..+++++|++ .++..+
T Consensus 1 m~i~~g~~i~l~G~~GsGKSTl~~~L~~~~~~~~~-~~i-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (207)
T 2j41_A 1 MDNEKGLLIVLSGPSGVGKGTVRKRIFEDPSTSYK-YSI-SMTTRQMR-EGEVDGVDYFFKTRDAFEALIKDDQFIEYAE 77 (207)
T ss_dssp ---CCCCEEEEECSTTSCHHHHHHHHHHCTTCCEE-CCC-CEECSCCC-TTCCBTTTBEECCHHHHHHHHHTTCEEEEEE
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHhhCCCeE-Eec-ccccCCCC-CCccCCCceEEcCHHHHHHHHHcCCeEEEEe
Confidence 46899999999999999999999999999977655 222 22222211 11223467777765 445566
Q ss_pred HHHHHhcCCCCCCCHHHHHHHHHH
Q 000984 1135 IRANIAYGKGGDATEAEIQAASEM 1158 (1198)
Q Consensus 1135 IreNI~~g~~~~~tdeei~~Al~~ 1158 (1198)
+++|+ || ...+++.++++.
T Consensus 78 ~~~~~-~g----~~~~~i~~~l~~ 96 (207)
T 2j41_A 78 YVGNY-YG----TPVQYVKDTMDE 96 (207)
T ss_dssp ETTEE-EE----EEHHHHHHHHHT
T ss_pred ECCee-cC----CCHHHHHHHHHc
Confidence 66663 54 235667776653
|
| >2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A* | Back alignment and structure |
|---|
Probab=98.41 E-value=3.3e-08 Score=104.82 Aligned_cols=79 Identities=19% Similarity=0.230 Sum_probs=56.4
Q ss_pred cceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHhhcceeccccccccccHHHHHhcC
Q 000984 1063 DLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYG 1142 (1198)
Q Consensus 1063 ~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~~i~l~~LR~~IsiV~Qdp~LF~gTIreNI~~g 1142 (1198)
++-=++++|+.++|+|++||||||++++|.+.++ .+.+|+||+++|++ +|+.++
T Consensus 13 ~~~~~~~~~~~i~i~G~~GsGKSTl~~~L~~~~~-----------------------~~~~i~~D~~~~~~---~~~~~~ 66 (207)
T 2qt1_A 13 GLVPRGSKTFIIGISGVTNSGKTTLAKNLQKHLP-----------------------NCSVISQDDFFKPE---SEIETD 66 (207)
T ss_dssp -CCCCSCCCEEEEEEESTTSSHHHHHHHHHTTST-----------------------TEEEEEGGGGBCCG---GGSCBC
T ss_pred cccccCCCCeEEEEECCCCCCHHHHHHHHHHhcC-----------------------CcEEEeCCccccCH---hHhhcc
Confidence 3344688999999999999999999999999875 47899999999987 677664
Q ss_pred CCCCCCHHHHHHHHHHcchHHHHHhc
Q 000984 1143 KGGDATEAEIQAASEMANAHKFICSL 1168 (1198)
Q Consensus 1143 ~~~~~tdeei~~Al~~A~l~dfI~~L 1168 (1198)
.. ...+.++.++++.+.+.++|..+
T Consensus 67 ~~-~~~~~~~~~~~~~~~l~~~i~~~ 91 (207)
T 2qt1_A 67 KN-GFLQYDVLEALNMEKMMSAISCW 91 (207)
T ss_dssp TT-SCBCCSSGGGBCHHHHHHHHHHH
T ss_pred cc-CCChhHHHHHhHHHHHHHHHHHH
Confidence 32 22222333444444555555544
|
| >3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0 | Back alignment and structure |
|---|
Probab=98.39 E-value=2.6e-08 Score=103.48 Aligned_cols=74 Identities=24% Similarity=0.383 Sum_probs=61.9
Q ss_pred eEEEeCCCEEEEEcCCCCcHHHHHHHHhccCC-------------CCCCeEEECCeecCCcCHHHHhcceEEEcCCCCCC
Q 000984 406 SISISSGTTAALVGQSGSGKSTVISLIERFYD-------------PQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLF 472 (1198)
Q Consensus 406 ~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~-------------~~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~ 472 (1198)
|+...+|++++|+||||||||||++.|++.++ |..|+ +||++..-++.+.+++.+ .|+..++
T Consensus 13 ~~~~~~g~~ivl~GPSGaGKsTL~~~L~~~~~~~~~~~vs~TTR~p~~gE--~~G~~y~fvs~~~f~~~i---~~~~fle 87 (197)
T 3ney_A 13 NLYFQGRKTLVLIGASGVGRSHIKNALLSQNPEKFVYPVPYTTRPPRKSE--EDGKEYHFISTEEMTRNI---SANEFLE 87 (197)
T ss_dssp ---CCSCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCCCTTC--CTTSSCEECCHHHHHHHH---HTTCEEE
T ss_pred cCCCCCCCEEEEECcCCCCHHHHHHHHHhhCCccEEeeecccccCCcCCe--eccccceeccHHHhhhhh---hhhhhhh
Confidence 34455899999999999999999999999886 67787 799998888999888875 6889999
Q ss_pred cccHHHHHhcCCC
Q 000984 473 TGSIKDNIAYGKD 485 (1198)
Q Consensus 473 ~~ti~~Ni~~~~~ 485 (1198)
.+++.+|. +|.+
T Consensus 88 ~~~~~~n~-YGt~ 99 (197)
T 3ney_A 88 FGSYQGNM-FGTK 99 (197)
T ss_dssp EEEETTEE-EEEE
T ss_pred hhhhhcee-cccc
Confidence 99999994 7754
|
| >1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A* | Back alignment and structure |
|---|
Probab=98.38 E-value=4.8e-08 Score=109.85 Aligned_cols=67 Identities=21% Similarity=0.234 Sum_probs=55.7
Q ss_pred cccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCC-eEEECCcccCCCChHHHHhhcceecccc
Q 000984 1059 QVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAG-HITLDGVEIQKLQLKWLRQQMGLVSQEP 1128 (1198)
Q Consensus 1059 ~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G-~I~IDG~dI~~i~l~~LR~~IsiV~Qdp 1128 (1198)
++|+++++.+++|+.++|+||+|||||||++.|.+...|++| .|.+.+.+ .+.+.+++++..+.|+.
T Consensus 23 ~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~e---~~~~~~~~r~~~~~~~~ 90 (296)
T 1cr0_A 23 TGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLE---ESVEETAEDLIGLHNRV 90 (296)
T ss_dssp TTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEESS---SCHHHHHHHHHHHHTTC
T ss_pred HHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeCc---CCHHHHHHHHHHHHcCC
Confidence 479999999999999999999999999999999999999878 78665444 35667777766666554
|
| >2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A | Back alignment and structure |
|---|
Probab=98.38 E-value=2.4e-07 Score=110.41 Aligned_cols=177 Identities=11% Similarity=0.160 Sum_probs=106.8
Q ss_pred ccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCC-eEEECCeecCCcCHHHHhcce-EEEcCCCCCCcccHH
Q 000984 400 QIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAG-EVLIDGINLKEFQLQWIRKKI-GLVSQEPVLFTGSIK 477 (1198)
Q Consensus 400 ~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G-~i~i~g~~~~~~~~~~~r~~i-~~v~Q~~~l~~~ti~ 477 (1198)
+.|+++..-+++|+++.|.|++|+|||||+..+++...+..| .|.+-+. +.+...++.++ +....-+ .
T Consensus 191 ~~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~---E~s~~~l~~r~~~~~~~~~-------~ 260 (454)
T 2r6a_A 191 TELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSL---EMSAQQLVMRMLCAEGNIN-------A 260 (454)
T ss_dssp HHHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEES---SSCHHHHHHHHHHHHHTCC-------H
T ss_pred HHHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEEC---CCCHHHHHHHHHHHHcCCC-------H
Confidence 468888878999999999999999999999999987766445 5555432 23444444332 1111100 0
Q ss_pred HHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhhc--cCCCEEEEeCCCCCCCH
Q 000984 478 DNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAIL--KDPRILLLDEATSALDA 555 (1198)
Q Consensus 478 ~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal~--~~~~illlDe~ts~lD~ 555 (1198)
+.+.-| ..++++.....+.. +.+...| -.+.+ ...+|++|.+ +.+|++. .+|+++++|+++.-.+.
T Consensus 261 ~~l~~g--~l~~~~~~~~~~a~---~~l~~~~----l~i~d-~~~~s~~~i~--~~~~~l~~~~~~~livID~l~~~~~~ 328 (454)
T 2r6a_A 261 QNLRTG--KLTPEDWGKLTMAM---GSLSNAG----IYIDD-TPSIRVSDIR--AKCRRLKQESGLGMIVIDYLQLIQGS 328 (454)
T ss_dssp HHHHTS--CCCHHHHHHHHHHH---HHHHSSC----EEEEC-CTTCCHHHHH--HHHHHHHTTTCCCEEEEECGGGSCCS
T ss_pred HHHhcC--CCCHHHHHHHHHHH---HHHhcCC----EEEEC-CCCCCHHHHH--HHHHHHHHHcCCCEEEEccHHHhccC
Confidence 122222 23444433332221 2232222 22222 2478999876 5667665 57999999999998753
Q ss_pred H-----hH---HHHHHHHHHHh--CCCeEEEEec---------C--cc--------hhh-ccCEEEEEeCCEE
Q 000984 556 E-----SE---KVVQEALDRIM--VNRTTVIVAH---------R--LS--------TVR-NADMIAVIHRGKI 598 (1198)
Q Consensus 556 ~-----~~---~~i~~~i~~~~--~~~t~i~itH---------~--~~--------~~~-~~d~i~~l~~G~i 598 (1198)
. .. ..+.+.++.+. .+.++|+++| . +. .+. .||.|+.|..++.
T Consensus 329 ~~~~~~~~~~i~~i~~~Lk~lAke~~i~vi~~sql~r~~e~~~~~~p~lsdlr~Sg~ie~~aD~vi~l~r~~~ 401 (454)
T 2r6a_A 329 GRSKENRQQEVSEISRSLKALARELEVPVIALSQLSRSVEQRQDKRPMMSDIRESGSIEQDADIVAFLYRDDY 401 (454)
T ss_dssp CC----CHHHHHHHHHHHHHHHHHHTCCEEEEECCCTTSTTC---CCCTHHHHTTCSHHHHCSEEEEEEETTC
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEecCCcccccCCCCCCcHHHhhccchhHhhCCEEEEEecccc
Confidence 2 11 23444555443 3789999999 1 32 333 4999999987654
|
| >3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.36 E-value=4.1e-08 Score=106.62 Aligned_cols=52 Identities=25% Similarity=0.441 Sum_probs=35.6
Q ss_pred cEEEeee-eEECCCCCCccccccceEEeeC---CCEEEEEcCCCCCHHHHHHHHhccc
Q 000984 1042 EIELHHV-SFKYPSRPDVQVFRDLNLKIRA---GKTVALVGESGSGKSTVVSLLQRFY 1095 (1198)
Q Consensus 1042 ~I~f~nV-sf~Y~~~~~~~vL~~is~~I~~---GekvaIVG~SGSGKSTL~~lL~R~y 1095 (1198)
-++++|| +|+|.+ +.++|+|+||+|++ |++++|+|++||||||+.++|.+.+
T Consensus 17 ~l~~~~~~~~~~~~--~~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 17 LLETGSLLHSPFDE--EQQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp -----------------CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred ceEEcceeeEEecC--cchhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 5899999 999932 34699999999999 9999999999999999999999843
|
| >3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A* | Back alignment and structure |
|---|
Probab=98.34 E-value=3.5e-08 Score=104.05 Aligned_cols=52 Identities=29% Similarity=0.424 Sum_probs=47.6
Q ss_pred cccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeE--EECCcccCC
Q 000984 1059 QVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHI--TLDGVEIQK 1111 (1198)
Q Consensus 1059 ~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I--~IDG~dI~~ 1111 (1198)
.+.+..++..++|+.++|+|+|||||||++++|.+.+. ..|.+ ++||.+++.
T Consensus 13 ~~~~~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~-~~G~~~~~~d~d~~~~ 66 (200)
T 3uie_A 13 EKVDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQMLY-QKGKLCYILDGDNVRH 66 (200)
T ss_dssp CHHHHHHHHTSCCEEEEEECSTTSSHHHHHHHHHHHHH-HTTCCEEEEEHHHHTT
T ss_pred CHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHH-hcCceEEEecCchhhh
Confidence 46788999999999999999999999999999999987 78998 999998864
|
| >4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP} | Back alignment and structure |
|---|
Probab=98.32 E-value=2.3e-07 Score=97.74 Aligned_cols=73 Identities=16% Similarity=0.084 Sum_probs=52.2
Q ss_pred cceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHhhcceeccccccccc-cHHHHHh
Q 000984 1063 DLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFND-TIRANIA 1140 (1198)
Q Consensus 1063 ~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~~i~l~~LR~~IsiV~Qdp~LF~g-TIreNI~ 1140 (1198)
+-.++.++|+.++|+|++||||||++++|.+.+ |.+.+||.++..- ....+..+++++|++.++.. ++.+|+.
T Consensus 21 ~~~m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~----g~~~i~~d~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 94 (200)
T 4eun_A 21 QSMMTGEPTRHVVVMGVSGSGKTTIAHGVADET----GLEFAEADAFHSP-ENIATMQRGIPLTDEDRWPWLRSLAEWM 94 (200)
T ss_dssp -------CCCEEEEECCTTSCHHHHHHHHHHHH----CCEEEEGGGGSCH-HHHHHHHTTCCCCHHHHHHHHHHHHHHH
T ss_pred HhhhcCCCCcEEEEECCCCCCHHHHHHHHHHhh----CCeEEcccccccH-HHHHHHhcCCCCCCcccccHHHHHHHHH
Confidence 334677899999999999999999999999987 9999999988531 11233468999999876643 5556653
|
| >2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A* | Back alignment and structure |
|---|
Probab=98.32 E-value=1.3e-07 Score=117.59 Aligned_cols=133 Identities=17% Similarity=0.170 Sum_probs=95.9
Q ss_pred eEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCC--CCCeEEECCeecCCcCHHHHhcceEEEcCCCCCCcccHHHHHhcC
Q 000984 406 SISISSGTTAALVGQSGSGKSTVISLIERFYDP--QAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYG 483 (1198)
Q Consensus 406 ~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~--~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~Ni~~~ 483 (1198)
++++++|.+++|+|++|+|||||++.|++...+ ..|+| .+|.++.+....+.++.+++.+|.+.++..+++.||.-.
T Consensus 3 s~~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V-~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDT 81 (665)
T 2dy1_A 3 TEGGAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRV-EEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDA 81 (665)
T ss_dssp ---CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCG-GGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEEC
T ss_pred CCccCCCcEEEEECCCCChHHHHHHHHHHhcCCCCcccee-cCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeC
Confidence 456788999999999999999999999987654 67988 789899999999989999999999988877777776521
Q ss_pred CCCCCH--HHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhhccCCCEEEEeCCCCCCCHHhHHHH
Q 000984 484 KDDATT--EEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVV 561 (1198)
Q Consensus 484 ~~~~~~--~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal~~~~~illlDe~ts~lD~~~~~~i 561 (1198)
|...+ .+... - .-..+..++++| |+.++|+.+.+.+
T Consensus 82 -pG~~~f~~~~~~--------------------------------------~--l~~ad~~ilVvD-~~~g~~~qt~~~~ 119 (665)
T 2dy1_A 82 -PGYGDFVGEIRG--------------------------------------A--LEAADAALVAVS-AEAGVQVGTERAW 119 (665)
T ss_dssp -CCSGGGHHHHHH--------------------------------------H--HHHCSEEEEEEE-TTTCSCHHHHHHH
T ss_pred -CCccchHHHHHH--------------------------------------H--HhhcCcEEEEEc-CCcccchhHHHHH
Confidence 11110 01110 0 112455688888 9999999887655
Q ss_pred HHHHHHHhCCCeEEEEecCcchh
Q 000984 562 QEALDRIMVNRTTVIVAHRLSTV 584 (1198)
Q Consensus 562 ~~~i~~~~~~~t~i~itH~~~~~ 584 (1198)
..+.. .+.++|++.|+++..
T Consensus 120 ~~~~~---~~ip~ilv~NKiD~~ 139 (665)
T 2dy1_A 120 TVAER---LGLPRMVVVTKLDKG 139 (665)
T ss_dssp HHHHH---TTCCEEEEEECGGGC
T ss_pred HHHHH---ccCCEEEEecCCchh
Confidence 44332 367888888888754
|
| >3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=98.29 E-value=8.1e-08 Score=101.89 Aligned_cols=81 Identities=22% Similarity=0.216 Sum_probs=63.1
Q ss_pred eCCCEEEEEcCCCCCHHHHHHHHhcccCC-CCCeEE----------ECCcccCCCChHHHHhhcceeccccccccccHHH
Q 000984 1069 RAGKTVALVGESGSGKSTVVSLLQRFYDP-DAGHIT----------LDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRA 1137 (1198)
Q Consensus 1069 ~~GekvaIVG~SGSGKSTL~~lL~R~ydp-~~G~I~----------IDG~dI~~i~l~~LR~~IsiV~Qdp~LF~gTIre 1137 (1198)
++|+.++|+||||||||||+++|.+.+++ ..+.+. .+|++..-++.+.+++.+ .|+.+++.+++.+
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~~~~~~~~~~~tr~~~~~e~~g~~y~~~~~~~f~~~~---~~~~~le~~~~~~ 82 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPETSFDYSISMTTRLPREGEQDGVDYYFRSREVFEQAI---KDGKMLEYAEYVG 82 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTTCCCEECCCEESSCCCTTCCBTTTBEECCHHHHHHHH---HTTCEEEEEEETT
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCCCcEEEEEecccccCcCcccCCceeEEecHHHHHHHH---hcCcEEEEEEEcc
Confidence 68999999999999999999999999976 333332 578888888999988876 6899999999888
Q ss_pred HHhcCCCCCCCHHHHHHHHH
Q 000984 1138 NIAYGKGGDATEAEIQAASE 1157 (1198)
Q Consensus 1138 NI~~g~~~~~tdeei~~Al~ 1157 (1198)
| .||. +.+.+.++++
T Consensus 83 ~-~yg~----~~~~i~~~l~ 97 (208)
T 3tau_A 83 N-YYGT----PLEYVEEKLA 97 (208)
T ss_dssp E-EEEE----EHHHHHHHHH
T ss_pred c-cCCC----cHHHHHHHHH
Confidence 8 4763 3444444443
|
| >1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A | Back alignment and structure |
|---|
Probab=98.26 E-value=1.3e-08 Score=117.10 Aligned_cols=137 Identities=14% Similarity=0.165 Sum_probs=86.6
Q ss_pred ccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcceEEEcCCCCCCcccHHHH
Q 000984 400 QIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDN 479 (1198)
Q Consensus 400 ~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~N 479 (1198)
.+++++++.+++|+.++|+||+|||||||+++|.|.+ +|.+..- +..+ +.++..+++++|.+.++ .|+
T Consensus 157 ~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~---~g~~~~~--~~~~---~~~~~~lg~~~q~~~~l----~dd 224 (377)
T 1svm_A 157 DFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLELC---GGKALNV--NLPL---DRLNFELGVAIDQFLVV----FED 224 (377)
T ss_dssp HHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHHH---CCEEECC--SSCT---TTHHHHHGGGTTCSCEE----ETT
T ss_pred HHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhhc---CCcEEEE--eccc---hhHHHHHHHhcchhHHH----HHH
Confidence 5899999999999999999999999999999999964 6776541 1111 22233578889887542 233
Q ss_pred HhcCCC---CC-CHHHHHHHHHHhcHHHHHHh---------CCCCcc-----chhcCCCCCCChHHHHHHhHHHhhccCC
Q 000984 480 IAYGKD---DA-TTEEIRVATELANAAKFIDK---------LPQGID-----TLVGEHGTQLSGGQKQRIAIARAILKDP 541 (1198)
Q Consensus 480 i~~~~~---~~-~~~~~~~~~~~~~~~~~i~~---------l~~g~~-----t~v~~~g~~lSgGqkqri~lARal~~~~ 541 (1198)
+.+... .. ....+. ....+.+.+.. -|+.++ -.+..+...+++|.+||++.+.+++.+|
T Consensus 225 ~~~~~~~~r~l~~~~~~~---~~~~l~~~ldG~v~v~~~tn~~~~l~alf~pg~ld~~~~~l~~~~~~rl~~~~~l~~~p 301 (377)
T 1svm_A 225 VKGTGGESRDLPSGQGIN---NLDNLRDYLDGSVKVNLEKKHLNKRTQIFPPGIVTMNEYSVPKTLQARFVKQIDFRPKD 301 (377)
T ss_dssp CCCSTTTTTTCCCCSHHH---HHHTTHHHHHCSSCEEECCSSSCCEEECCCCEEEEECSCCCCHHHHTTEEEEEECCCCH
T ss_pred HHHHHHHHhhccccCcch---HHHHHHHHhcCCCeEeeccCchhhHHHhhcCcccChhHHhhcHHHHHHHhhhhccCCCC
Confidence 332211 00 000000 11122222210 000001 1234455678999999999999999999
Q ss_pred CEEE-EeCCCC
Q 000984 542 RILL-LDEATS 551 (1198)
Q Consensus 542 ~ill-lDe~ts 551 (1198)
++++ ||+|+.
T Consensus 302 DLliyLd~~~~ 312 (377)
T 1svm_A 302 YLKHCLERSEF 312 (377)
T ss_dssp HHHHHHHTCTH
T ss_pred CeEEEEeCCHH
Confidence 9988 999987
|
| >1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=98.26 E-value=1.5e-07 Score=96.90 Aligned_cols=51 Identities=18% Similarity=0.234 Sum_probs=39.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHhhcceecccc
Q 000984 1073 TVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMGLVSQEP 1128 (1198)
Q Consensus 1073 kvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~~i~l~~LR~~IsiV~Qdp 1128 (1198)
+++|+||+|||||||+++|.+++. |.++|.+..+......++++++++|++
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~-----i~~~g~~~~~~~~~~~~~~ig~~~~~~ 52 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG-----KRAIGFWTEEVRDPETKKRTGFRIITT 52 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG-----GGEEEEEEEEEC------CCEEEEEET
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC-----CcCCCEEhhhhccccccceeEEEeecC
Confidence 689999999999999999999995 778898775543225688999999987
|
| >3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A | Back alignment and structure |
|---|
Probab=98.25 E-value=2.2e-07 Score=104.42 Aligned_cols=56 Identities=14% Similarity=0.191 Sum_probs=51.1
Q ss_pred CcccEEEeeeeEECCCCCCccccc--------------cceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccC
Q 000984 1039 VKGEIELHHVSFKYPSRPDVQVFR--------------DLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYD 1096 (1198)
Q Consensus 1039 ~~G~I~f~nVsf~Y~~~~~~~vL~--------------~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~yd 1096 (1198)
.+|.|+|+||+|.||.+ ..+|+ |+++.|.+||+++|||++|+|||||+++|.|+..
T Consensus 130 ~~~ri~Fe~ltp~yP~e--r~~Le~~~~~~~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i~ 199 (422)
T 3ice_A 130 ARNKILFENLTPLHANS--RLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIA 199 (422)
T ss_dssp HTTSCCTTTSCEESCCS--BCCCCCTTCCTTHHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHHH
T ss_pred hcCCceeccccccCCCC--ccccccCCCCcccccceeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHHh
Confidence 46899999999999853 46899 9999999999999999999999999999999863
|
| >1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=98.25 E-value=9.4e-08 Score=98.87 Aligned_cols=70 Identities=21% Similarity=0.220 Sum_probs=52.6
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhccCCC-CCCeEE----------ECCeecCCcCHHHHhcceEEEcCCCCCCcccHHHH
Q 000984 411 SGTTAALVGQSGSGKSTVISLIERFYDP-QAGEVL----------IDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDN 479 (1198)
Q Consensus 411 ~g~~~~ivG~~GsGKStl~~~l~g~~~~-~~G~i~----------i~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~N 479 (1198)
+|++++|+||||||||||++.|.+.+++ ..|.|. ++|++...++.+.++.. +.|+..++.+++.+|
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~~L~~~~~~~~~~~i~~ttr~~~~ge~~g~~~~~~~~~~~~~~---~~~~~~l~~~~~~~n 80 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKNTLITKHPDRFAYPIPHTTRPPKKDEENGKNYYFVSHDQMMQD---ISNNEYLEYGSHEDA 80 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCC---CCBTTTBEECCHHHHHHH---HHTTCEEEEEEETTE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCCccEEEeeeccCCCCCccccCCCeeEEeCHHHHHHH---HHcCCceEEEEEcCc
Confidence 6999999999999999999999998863 344443 35666666666666653 567778888888888
Q ss_pred HhcCC
Q 000984 480 IAYGK 484 (1198)
Q Consensus 480 i~~~~ 484 (1198)
.+|.
T Consensus 81 -~yg~ 84 (180)
T 1kgd_A 81 -MYGT 84 (180)
T ss_dssp -EEEE
T ss_pred -cccc
Confidence 4453
|
| >2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B* | Back alignment and structure |
|---|
Probab=98.24 E-value=5.1e-07 Score=116.55 Aligned_cols=74 Identities=22% Similarity=0.205 Sum_probs=56.3
Q ss_pred ccEEEee-----eeEECCCCCCccccccceEEeeC-------CCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcc
Q 000984 1041 GEIELHH-----VSFKYPSRPDVQVFRDLNLKIRA-------GKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVE 1108 (1198)
Q Consensus 1041 G~I~f~n-----Vsf~Y~~~~~~~vL~~is~~I~~-------GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~d 1108 (1198)
+.|+++| |++.|++ +.+|++|++|++++ |+.++|+||+||||||+++.+ ++..+
T Consensus 749 ~~l~i~~~rHP~l~~~~~~--~~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~~----------- 814 (1022)
T 2o8b_B 749 PFLELKGSRHPCITKTFFG--DDFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLAV----------- 814 (1022)
T ss_dssp CCEEEEEECCCC------C--CCCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHHH-----------
T ss_pred ceEEEEeccccEEEEEecC--CceEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHHH-----------
Confidence 4599999 9999953 34699999999988 999999999999999999999 98863
Q ss_pred cCCCChHHHHhhcc-eeccccccccccHHHHH
Q 000984 1109 IQKLQLKWLRQQMG-LVSQEPVLFNDTIRANI 1139 (1198)
Q Consensus 1109 I~~i~l~~LR~~Is-iV~Qdp~LF~gTIreNI 1139 (1198)
+.+++ +|||++. .-|+.|||
T Consensus 815 ---------~aqiG~~Vpq~~~--~l~v~d~I 835 (1022)
T 2o8b_B 815 ---------MAQMGCYVPAEVC--RLTPIDRV 835 (1022)
T ss_dssp ---------HHTTTCCEESSEE--EECCCSBE
T ss_pred ---------HhheeEEeccCcC--CCCHHHHH
Confidence 45676 9999973 44666665
|
| >3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.23 E-value=3.8e-07 Score=95.94 Aligned_cols=45 Identities=22% Similarity=0.138 Sum_probs=25.0
Q ss_pred ECCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhccc
Q 000984 1051 KYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFY 1095 (1198)
Q Consensus 1051 ~Y~~~~~~~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~y 1095 (1198)
+|++++..++++||||++++|+.++|+|++||||||+.+.|.+.+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 5 HHHSSGVDLGTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp -------------------CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cCCCCCCCCCCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 576666668999999999999999999999999999999999866
|
| >1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A | Back alignment and structure |
|---|
Probab=98.20 E-value=3.8e-07 Score=102.90 Aligned_cols=81 Identities=16% Similarity=0.205 Sum_probs=65.0
Q ss_pred ccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCC----hHHH-----Hhhccee-ccccc
Q 000984 1060 VFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQ----LKWL-----RQQMGLV-SQEPV 1129 (1198)
Q Consensus 1060 vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~~i~----l~~L-----R~~IsiV-~Qdp~ 1129 (1198)
++++++|++++|+.++|+|++|+||||++..|.+.+.+.+|+|.+.+.|+.... +..+ |.++.++ +|++.
T Consensus 94 ~~~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D~~r~~a~~ql~~~~~~~~~~~l~vip~~~~~ 173 (320)
T 1zu4_A 94 KKYRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADTFRAGATQQLEEWIKTRLNNKVDLVKANKLN 173 (320)
T ss_dssp --CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCSCHHHHHHHHHHHTTTSCTTEEEECCSSTT
T ss_pred cccCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHhccccCCceEEeCCCCC
Confidence 457899999999999999999999999999999999999999999999986543 2344 6679999 77755
Q ss_pred cccc-cHHHHHh
Q 000984 1130 LFND-TIRANIA 1140 (1198)
Q Consensus 1130 LF~g-TIreNI~ 1140 (1198)
+... ++++|+.
T Consensus 174 ~~p~~~~~~~l~ 185 (320)
T 1zu4_A 174 ADPASVVFDAIK 185 (320)
T ss_dssp CCHHHHHHHHHH
T ss_pred CCHHHHHHHHHH
Confidence 4433 5677765
|
| >1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A* | Back alignment and structure |
|---|
Probab=98.20 E-value=4.2e-07 Score=113.69 Aligned_cols=84 Identities=17% Similarity=0.209 Sum_probs=61.2
Q ss_pred cccEEEeeeeEECCCC--CCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccC-CCCCeEEECCcccCCCChHH
Q 000984 1040 KGEIELHHVSFKYPSR--PDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYD-PDAGHITLDGVEIQKLQLKW 1116 (1198)
Q Consensus 1040 ~G~I~f~nVsf~Y~~~--~~~~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~yd-p~~G~I~IDG~dI~~i~l~~ 1116 (1198)
.+.|++++. +||-- .+.+|++|+||+ |+.++|+||+||||||+++++.++.. ++.|.+. + .
T Consensus 548 ~~~i~i~~~--rHP~le~~~~~vl~disl~---g~i~~I~GpNGsGKSTlLr~iagl~~~~~~G~~v----p-------a 611 (765)
T 1ewq_A 548 GDRLQIRAG--RHPVVERRTEFVPNDLEMA---HELVLITGPNMAGKSTFLRQTALIALLAQVGSFV----P-------A 611 (765)
T ss_dssp SSSEEEEEE--CCTTGGGTSCCCCEEEEES---SCEEEEESCSSSSHHHHHHHHHHHHHHHTTTCCB----S-------S
T ss_pred CCcEEEEEe--ECceEccCCceEeeeccCC---CcEEEEECCCCCChHHHHHHHHhhhhhcccCcee----e-------h
Confidence 457999987 66631 235799999999 99999999999999999999999874 6788753 1 1
Q ss_pred HHhhcceeccccccccc-cHHHHHhcC
Q 000984 1117 LRQQMGLVSQEPVLFND-TIRANIAYG 1142 (1198)
Q Consensus 1117 LR~~IsiV~Qdp~LF~g-TIreNI~~g 1142 (1198)
.+.++++|+| +|.. |++|||..|
T Consensus 612 ~~~~i~~v~~---i~~~~~~~d~l~~g 635 (765)
T 1ewq_A 612 EEAHLPLFDG---IYTRIGASDDLAGG 635 (765)
T ss_dssp SEEEECCCSE---EEEECCC------C
T ss_pred hccceeeHHH---hhccCCHHHHHHhc
Confidence 2467899988 5654 899999876
|
| >1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=98.19 E-value=1.6e-07 Score=104.52 Aligned_cols=90 Identities=18% Similarity=0.187 Sum_probs=74.4
Q ss_pred EEeeeeEECCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHhhcce
Q 000984 1044 ELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMGL 1123 (1198)
Q Consensus 1044 ~f~nVsf~Y~~~~~~~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~~i~l~~LR~~Isi 1123 (1198)
+++++...|. ...+++++++++++| ++|+||+|+|||||+++|.+... .|.|.++|.++.+......++++..
T Consensus 51 ~l~~l~~~~~---~~~~l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~~--~~~i~~~~~~~~~~~~~~~~~~i~~ 123 (278)
T 1iy2_A 51 ELKEIVEFLK---NPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVGAARVRD 123 (278)
T ss_dssp HHHHHHHHHH---CHHHHHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHHTT--CCEEEEEHHHHHHSTTTHHHHHHHH
T ss_pred HHHHHHHHHH---CHHHHHHcCCCCCCe--EEEECCCcChHHHHHHHHHHHcC--CCEEEecHHHHHHHHhhHHHHHHHH
Confidence 4567777774 235899999999999 99999999999999999999885 7999999999877777777888999
Q ss_pred eccccc-cc-cccHHHHHh
Q 000984 1124 VSQEPV-LF-NDTIRANIA 1140 (1198)
Q Consensus 1124 V~Qdp~-LF-~gTIreNI~ 1140 (1198)
++|++. .+ .-++.||+.
T Consensus 124 ~~~~~~~~~~~i~~iDeid 142 (278)
T 1iy2_A 124 LFETAKRHAPCIVFIDEID 142 (278)
T ss_dssp HHHHHHTSCSEEEEEETHH
T ss_pred HHHHHHhcCCcEEehhhhH
Confidence 999875 33 346778884
|
| >2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A* | Back alignment and structure |
|---|
Probab=98.19 E-value=5.1e-07 Score=94.85 Aligned_cols=137 Identities=21% Similarity=0.238 Sum_probs=71.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhccCC-----CC------CCeEEECCeecC----CcC-HHHHhcceEEEcCCCC--C--Cc
Q 000984 414 TAALVGQSGSGKSTVISLIERFYD-----PQ------AGEVLIDGINLK----EFQ-LQWIRKKIGLVSQEPV--L--FT 473 (1198)
Q Consensus 414 ~~~ivG~~GsGKStl~~~l~g~~~-----~~------~G~i~i~g~~~~----~~~-~~~~r~~i~~v~Q~~~--l--~~ 473 (1198)
+++|+|++|||||||++.|.|... |+ .|+|.++|.++. +.+ .+..+.......|++. + |+
T Consensus 7 kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d 86 (199)
T 2f9l_A 7 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGALLVYD 86 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEEEEEE
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHHhcCCEEEEEEE
Confidence 689999999999999999999742 33 578999997542 221 2222222222223221 1 11
Q ss_pred ccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHh-CCCCcc-chhcCCCCCCChHHHHHHhHHHhhccCCCEEEEeCCCC
Q 000984 474 GSIKDNIAYGKDDATTEEIRVATELANAAKFIDK-LPQGID-TLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATS 551 (1198)
Q Consensus 474 ~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~-l~~g~~-t~v~~~g~~lSgGqkqri~lARal~~~~~illlDe~ts 551 (1198)
.+ +.......... .+.+.. .+.+.. -.++.+- .|..-.......||++..+|++.++| ||
T Consensus 87 ~~------------~~~s~~~~~~~---~~~~~~~~~~~~~i~~v~nK~-Dl~~~~~~~~~~a~~l~~~~~~~~~d--~S 148 (199)
T 2f9l_A 87 IA------------KHLTYENVERW---LKELRDHADSNIVIMLVGNKS-DLRHLRAVPTDEARAFAEKNNLSFIE--TS 148 (199)
T ss_dssp TT------------CHHHHHTHHHH---HHHHHHHSCTTCEEEEEEECT-TCGGGCCSCHHHHHHHHHHTTCEEEE--CC
T ss_pred Cc------------CHHHHHHHHHH---HHHHHHhcCCCCeEEEEEECc-ccccccCcCHHHHHHHHHHcCCeEEE--Ee
Confidence 11 11111111000 001111 011111 1122221 12111112245689999999999999 99
Q ss_pred CCCHHhHHHHHHHHHHH
Q 000984 552 ALDAESEKVVQEALDRI 568 (1198)
Q Consensus 552 ~lD~~~~~~i~~~i~~~ 568 (1198)
++|......+.+.+.+.
T Consensus 149 al~~~~i~~l~~~l~~~ 165 (199)
T 2f9l_A 149 ALDSTNVEEAFKNILTE 165 (199)
T ss_dssp TTTCTTHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHH
Confidence 99999877777666543
|
| >2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=98.19 E-value=3.8e-07 Score=95.06 Aligned_cols=62 Identities=21% Similarity=0.114 Sum_probs=49.6
Q ss_pred CCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHhhcceeccccccc-cccHHHHHhc
Q 000984 1071 GKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLF-NDTIRANIAY 1141 (1198)
Q Consensus 1071 GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~~i~l~~LR~~IsiV~Qdp~LF-~gTIreNI~~ 1141 (1198)
|+.++|+|++||||||+++.|.+ +.+|.|.+||.++... ..+++++|+...+ ..|+++|+.+
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~---~~~g~~~i~~d~~~~~------~~~~~~~~~~~~~~~~~~~~~l~~ 64 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAA---QLDNSAYIEGDIINHM------VVGGYRPPWESDELLALTWKNITD 64 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH---HSSSEEEEEHHHHHTT------CCTTCCCGGGCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHhc---ccCCeEEEcccchhhh------hccccccCccchhHHHHHHHHHHH
Confidence 68899999999999999999987 6689999999877542 2467888877443 4588888753
|
| >2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E* | Back alignment and structure |
|---|
Probab=98.18 E-value=2.5e-06 Score=101.02 Aligned_cols=114 Identities=22% Similarity=0.316 Sum_probs=73.7
Q ss_pred ccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcceEEEcCCCCCCcccHHHH
Q 000984 400 QIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDN 479 (1198)
Q Consensus 400 ~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~N 479 (1198)
..++++++.+++| +.|+||+|+|||||++++.+..... -+.+++. +.
T Consensus 39 ~~~~~~g~~~p~g--vLL~GppGtGKT~Laraia~~~~~~--f~~is~~-----------------------------~~ 85 (476)
T 2ce7_A 39 SKFNRIGARMPKG--ILLVGPPGTGKTLLARAVAGEANVP--FFHISGS-----------------------------DF 85 (476)
T ss_dssp HHHHTTTCCCCSE--EEEECCTTSSHHHHHHHHHHHHTCC--EEEEEGG-----------------------------GT
T ss_pred HHHhhcCCCCCCe--EEEECCCCCCHHHHHHHHHHHcCCC--eeeCCHH-----------------------------HH
Confidence 3567778888877 8999999999999999999854210 0111110 00
Q ss_pred HhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhhccCCCEEEEeCCCC--------
Q 000984 480 IAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATS-------- 551 (1198)
Q Consensus 480 i~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal~~~~~illlDe~ts-------- 551 (1198)
+. . .+| .|++++|-.+++|....|.|+++||+-+
T Consensus 86 ~~-------------------------~-------~~g------~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~ 127 (476)
T 2ce7_A 86 VE-------------------------L-------FVG------VGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAG 127 (476)
T ss_dssp TT-------------------------C-------CTT------HHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC----
T ss_pred HH-------------------------H-------Hhc------ccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccc
Confidence 00 0 011 2678899999999999999999999944
Q ss_pred --CCCHHhHHHHHHHHHHH-----hCCCeEEEEecCcchh
Q 000984 552 --ALDAESEKVVQEALDRI-----MVNRTTVIVAHRLSTV 584 (1198)
Q Consensus 552 --~lD~~~~~~i~~~i~~~-----~~~~t~i~itH~~~~~ 584 (1198)
+.|.+..+.+.+.+..+ ..+..+|..||+++.+
T Consensus 128 ~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~~L 167 (476)
T 2ce7_A 128 LGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPDIL 167 (476)
T ss_dssp -----CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGGGS
T ss_pred cCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCChhhh
Confidence 55555555554444433 1345777889998654
|
| >1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A* | Back alignment and structure |
|---|
Probab=98.18 E-value=1.6e-07 Score=102.87 Aligned_cols=91 Identities=18% Similarity=0.175 Sum_probs=75.0
Q ss_pred EEEeeeeEECCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHhhcc
Q 000984 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMG 1122 (1198)
Q Consensus 1043 I~f~nVsf~Y~~~~~~~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~~i~l~~LR~~Is 1122 (1198)
.+++++...|. .+.+++++++++++| ++|+||+|+|||||+++|.+... .|.|.++|.++.+......++++.
T Consensus 26 ~~l~~l~~~~~---~~~~~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~~--~~~i~~~~~~~~~~~~~~~~~~i~ 98 (254)
T 1ixz_A 26 EELKEIVEFLK---NPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVGAARVR 98 (254)
T ss_dssp HHHHHHHHHHH---CHHHHHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHHTT--CCEEEEEHHHHHHSCTTHHHHHHH
T ss_pred HHHHHHHHHHH---CHHHHHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHHhC--CCEEEeeHHHHHHHHhhHHHHHHH
Confidence 46678877774 235899999999999 99999999999999999999886 799999999987776677788899
Q ss_pred eeccccc-cc-cccHHHHHh
Q 000984 1123 LVSQEPV-LF-NDTIRANIA 1140 (1198)
Q Consensus 1123 iV~Qdp~-LF-~gTIreNI~ 1140 (1198)
.++|++. .+ .-++.||+.
T Consensus 99 ~~~~~~~~~~~~i~~~Deid 118 (254)
T 1ixz_A 99 DLFETAKRHAPCIVFIDEID 118 (254)
T ss_dssp HHHHHHTTSSSEEEEEETHH
T ss_pred HHHHHHHhcCCeEEEehhhh
Confidence 9999874 33 346677873
|
| >2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A* | Back alignment and structure |
|---|
Probab=98.17 E-value=2.8e-07 Score=97.54 Aligned_cols=52 Identities=17% Similarity=0.211 Sum_probs=43.2
Q ss_pred eEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcceEEEcCCCCCCcccHHHHHhcC
Q 000984 406 SISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYG 483 (1198)
Q Consensus 406 ~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~Ni~~~ 483 (1198)
--++++|++++|+|++||||||+++.|.+.++ .+.+++||+.++.+ +|+.++
T Consensus 15 ~~~~~~~~~i~i~G~~GsGKSTl~~~L~~~~~-----------------------~~~~i~~D~~~~~~---~~~~~~ 66 (207)
T 2qt1_A 15 VPRGSKTFIIGISGVTNSGKTTLAKNLQKHLP-----------------------NCSVISQDDFFKPE---SEIETD 66 (207)
T ss_dssp CCCSCCCEEEEEEESTTSSHHHHHHHHHTTST-----------------------TEEEEEGGGGBCCG---GGSCBC
T ss_pred cccCCCCeEEEEECCCCCCHHHHHHHHHHhcC-----------------------CcEEEeCCccccCH---hHhhcc
Confidence 34677899999999999999999999999874 38899999988876 566543
|
| >2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A* | Back alignment and structure |
|---|
Probab=98.13 E-value=2.6e-07 Score=99.66 Aligned_cols=65 Identities=22% Similarity=0.197 Sum_probs=52.1
Q ss_pred ceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCC------ChHH----HHhhcceecccccccc
Q 000984 1064 LNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKL------QLKW----LRQQMGLVSQEPVLFN 1132 (1198)
Q Consensus 1064 is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~~i------~l~~----LR~~IsiV~Qdp~LF~ 1132 (1198)
-+.+.++|+.++|+|++||||||++++|.++ +|+|.++|.|+... .+.. .++++++++|++.+|.
T Consensus 13 ~~~~~~~g~~i~i~G~~GsGKSTl~~~L~~~----~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~l~~ 87 (230)
T 2vp4_A 13 KYAEGTQPFTVLIEGNIGSGKTTYLNHFEKY----KNDICLLTEPVEKWRNVNGVNLLELMYKDPKKWAMPFQSYVTLT 87 (230)
T ss_dssp CBTTTCCCEEEEEECSTTSCHHHHHHTTGGG----TTTEEEECCTHHHHTCBTTBCHHHHHHHSHHHHHHHHHHHHHHH
T ss_pred ccCCCCCceEEEEECCCCCCHHHHHHHHHhc----cCCeEEEecCHHHhhcccCCChHHHHHhChHhhhhhhHHHHHHH
Confidence 3445689999999999999999999999998 79999999987532 1211 2567899999987764
|
| >1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A* | Back alignment and structure |
|---|
Probab=98.12 E-value=2.9e-08 Score=113.49 Aligned_cols=94 Identities=15% Similarity=0.208 Sum_probs=73.9
Q ss_pred EEEeeeeEECCCCCCccccccceEEeeCC-------CEEEEEcCCCCCHHHHHHHHhccc----CCCCCeEEECCcccCC
Q 000984 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAG-------KTVALVGESGSGKSTVVSLLQRFY----DPDAGHITLDGVEIQK 1111 (1198)
Q Consensus 1043 I~f~nVsf~Y~~~~~~~vL~~is~~I~~G-------ekvaIVG~SGSGKSTL~~lL~R~y----dp~~G~I~IDG~dI~~ 1111 (1198)
++.++++..|.+ ..+++++++.|++| +.++|+||+|+|||||++++.+.. .+.+|.+..+|.|+..
T Consensus 19 lr~~~l~~~~g~---~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~~~l~~ 95 (334)
T 1in4_A 19 LRPKSLDEFIGQ---ENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAA 95 (334)
T ss_dssp TSCSSGGGCCSC---HHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSHHHHHH
T ss_pred cCCccHHHccCc---HHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCHHHHHH
Confidence 455667767753 25899999999987 889999999999999999999998 6778998888887754
Q ss_pred CChHHHHhhcceeccccccccccHHHHHh
Q 000984 1112 LQLKWLRQQMGLVSQEPVLFNDTIRANIA 1140 (1198)
Q Consensus 1112 i~l~~LR~~IsiV~Qdp~LF~gTIreNI~ 1140 (1198)
+.....+..|.+|+|...|+. ++.|++.
T Consensus 96 ~~~~~~~~~v~~iDE~~~l~~-~~~e~L~ 123 (334)
T 1in4_A 96 ILTSLERGDVLFIDEIHRLNK-AVEELLY 123 (334)
T ss_dssp HHHHCCTTCEEEEETGGGCCH-HHHHHHH
T ss_pred HHHHccCCCEEEEcchhhcCH-HHHHHHH
Confidence 311112457999999988876 8888874
|
| >2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A* | Back alignment and structure |
|---|
Probab=98.12 E-value=3.2e-07 Score=114.17 Aligned_cols=105 Identities=25% Similarity=0.197 Sum_probs=82.4
Q ss_pred eEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCC--CCCeEEECCcccCCCChHHHHhhcceeccccccccccHHHHHh--
Q 000984 1065 NLKIRAGKTVALVGESGSGKSTVVSLLQRFYDP--DAGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIA-- 1140 (1198)
Q Consensus 1065 s~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp--~~G~I~IDG~dI~~i~l~~LR~~IsiV~Qdp~LF~gTIreNI~-- 1140 (1198)
|+++++|.+++|+|++|+|||||++.|.+...+ ..|+| .+|.++.++.....++.+++.+|.+.++.++++.||.
T Consensus 3 s~~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V-~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDT 81 (665)
T 2dy1_A 3 TEGGAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRV-EEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDA 81 (665)
T ss_dssp ---CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCG-GGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEEC
T ss_pred CCccCCCcEEEEECCCCChHHHHHHHHHHhcCCCCcccee-cCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeC
Confidence 467889999999999999999999999987765 78999 8999999999999999999999999999999999985
Q ss_pred cCCCCCCCHHHHHHHHHHcchHHHHHhccccc
Q 000984 1141 YGKGGDATEAEIQAASEMANAHKFICSLQQVR 1172 (1198)
Q Consensus 1141 ~g~~~~~tdeei~~Al~~A~l~dfI~~LP~g~ 1172 (1198)
.|. .+. ..++..+++.++..-++-...+|+
T Consensus 82 pG~-~~f-~~~~~~~l~~ad~~ilVvD~~~g~ 111 (665)
T 2dy1_A 82 PGY-GDF-VGEIRGALEAADAALVAVSAEAGV 111 (665)
T ss_dssp CCS-GGG-HHHHHHHHHHCSEEEEEEETTTCS
T ss_pred CCc-cch-HHHHHHHHhhcCcEEEEEcCCccc
Confidence 331 122 267778888776544443333333
|
| >2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A | Back alignment and structure |
|---|
Probab=98.10 E-value=3.2e-07 Score=100.01 Aligned_cols=68 Identities=16% Similarity=0.224 Sum_probs=56.3
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHh---cccCCCCCeEEECCcccCCCChHHHHhhcceecccccccc-ccHHHHHhc
Q 000984 1070 AGKTVALVGESGSGKSTVVSLLQ---RFYDPDAGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFN-DTIRANIAY 1141 (1198)
Q Consensus 1070 ~GekvaIVG~SGSGKSTL~~lL~---R~ydp~~G~I~IDG~dI~~i~l~~LR~~IsiV~Qdp~LF~-gTIreNI~~ 1141 (1198)
+++.++|+|++||||||++++|. ++..|+.|+|.++|.+.. ..++..+..++|++.++. .|+.+|+..
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~~G~i~~~~~~~~----~~~~~~i~~~~~~~~~~~~~~v~~~l~~ 97 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRENIKAS----TEVGEMAKQYIEKSLLVPDHVITRLMMS 97 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCCEEHHHHHHHHHHTT----CHHHHHHHHHHHTTCCCCHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHHHHhcC----ChHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 47999999999999999999999 999999999999987642 245667788888876654 588888853
|
| >1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=98.08 E-value=1.6e-06 Score=93.94 Aligned_cols=69 Identities=20% Similarity=0.329 Sum_probs=53.6
Q ss_pred EeeCCCEEEEEcCCCCCHHHHHHHHhc--ccCC-----CCCeEEECCccc-CCCChHHHHhhcceeccccccccccHHHH
Q 000984 1067 KIRAGKTVALVGESGSGKSTVVSLLQR--FYDP-----DAGHITLDGVEI-QKLQLKWLRQQMGLVSQEPVLFNDTIRAN 1138 (1198)
Q Consensus 1067 ~I~~GekvaIVG~SGSGKSTL~~lL~R--~ydp-----~~G~I~IDG~dI-~~i~l~~LR~~IsiV~Qdp~LF~gTIreN 1138 (1198)
-|++|+.++|+||+|||||||+..|.+ ...| ..|.+++++.+. ..-.+..+++++++.+|+ +.+|
T Consensus 20 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~-------~~~~ 92 (243)
T 1n0w_A 20 GIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGSD-------VLDN 92 (243)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHH-------HHHT
T ss_pred CCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHHHHHHHcCCCHHH-------HhhC
Confidence 589999999999999999999999999 4544 678999999873 112244566788988875 4567
Q ss_pred HhcC
Q 000984 1139 IAYG 1142 (1198)
Q Consensus 1139 I~~g 1142 (1198)
+.+.
T Consensus 93 ~~~~ 96 (243)
T 1n0w_A 93 VAYA 96 (243)
T ss_dssp EEEE
T ss_pred eEEE
Confidence 6653
|
| >3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.07 E-value=4.1e-07 Score=98.69 Aligned_cols=52 Identities=27% Similarity=0.365 Sum_probs=36.1
Q ss_pred cEEEEeE-EEEcCCCCCCccccceeEEEeC---CCEEEEEcCCCCcHHHHHHHHhccC
Q 000984 383 DIELRDV-YFSYPARPNEQIFSGFSISISS---GTTAALVGQSGSGKSTVISLIERFY 436 (1198)
Q Consensus 383 ~i~~~~v-~~~y~~~~~~~~l~~i~l~i~~---g~~~~ivG~~GsGKStl~~~l~g~~ 436 (1198)
.++++|+ +|+|.. +.++|+|+||+|++ |+.++|+|++||||||+.+.|.+.+
T Consensus 17 ~l~~~~~~~~~~~~--~~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 17 LLETGSLLHSPFDE--EQQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp -----------------CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred ceEEcceeeEEecC--cchhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 5899999 999932 35799999999999 9999999999999999999999865
|
| >2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.05 E-value=2.1e-07 Score=110.91 Aligned_cols=128 Identities=18% Similarity=0.213 Sum_probs=90.4
Q ss_pred CccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcceEEEcCCCC-CC-cccH
Q 000984 399 EQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPV-LF-TGSI 476 (1198)
Q Consensus 399 ~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~-l~-~~ti 476 (1198)
+..++++++++++| +.|+||+|||||||+++|.++.. .|.+.++|.++.+......++++..++|++. .. .-.+
T Consensus 53 ~~~~~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~~~--~~~i~i~g~~~~~~~~g~~~~~v~~lfq~a~~~~p~il~ 128 (499)
T 2dhr_A 53 PSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVF 128 (499)
T ss_dssp GGGTTTTSCCCCSE--EEEECSSSSSHHHHHHHHHHHTT--CCEEEEEGGGGTSSCTTHHHHHHHHHTTTSSSSSSCEEE
T ss_pred hhhhhhccCCCCce--EEEECCCCCCHHHHHHHHHHHhC--CCEEEEehhHHHHhhhhhHHHHHHHHHHHHHhcCCCEEE
Confidence 35789999999999 99999999999999999999875 6899999988766544445566778888764 22 2345
Q ss_pred HHHHh-cCCCCC-----CHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhhccCCCEEEEeCCC
Q 000984 477 KDNIA-YGKDDA-----TTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEAT 550 (1198)
Q Consensus 477 ~~Ni~-~~~~~~-----~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal~~~~~illlDe~t 550 (1198)
-|+|. ++.... ..++..+.+ ...+. .|||||+|+..+++|...+|++ |||++
T Consensus 129 IDEId~l~~~r~~~~~~~~~e~~~~l-----~~LL~---------------~Ldg~~~~~~viviAatn~p~~--LD~aL 186 (499)
T 2dhr_A 129 IDEIDAVGRKRGSGVGGGNDEREQTL-----NQLLV---------------EMDGFEKDTAIVVMAATNRPDI--LDPAL 186 (499)
T ss_dssp EECGGGTCCCSSSSTTTSSHHHHHHH-----HHHHH---------------HGGGCCSSCCCEEEECCSCGGG--SCTTT
T ss_pred EehHHHHHHhhccCcCCCcHHHHHHH-----HHHHH---------------HhcccccCccEEEEEecCChhh--cCccc
Confidence 66774 222111 112221111 11121 2678899999999999999988 89988
Q ss_pred CC
Q 000984 551 SA 552 (1198)
Q Consensus 551 s~ 552 (1198)
-.
T Consensus 187 lr 188 (499)
T 2dhr_A 187 LR 188 (499)
T ss_dssp SS
T ss_pred cc
Confidence 64
|
| >2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A | Back alignment and structure |
|---|
Probab=98.03 E-value=1.9e-06 Score=99.02 Aligned_cols=143 Identities=10% Similarity=0.188 Sum_probs=81.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhccCC-----------CCCCeEEECCeecCCcCHHHHhcceEEEcCCCCC----CcccHHH
Q 000984 414 TAALVGQSGSGKSTVISLIERFYD-----------PQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVL----FTGSIKD 478 (1198)
Q Consensus 414 ~~~ivG~~GsGKStl~~~l~g~~~-----------~~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l----~~~ti~~ 478 (1198)
.++|+|++|||||||++.|.|... +..|.|.++|.++.- ....|++.|.|.- |..|. +
T Consensus 181 ~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~v~l------~DT~G~i~~lp~~lve~f~~tl-~ 253 (364)
T 2qtf_A 181 SIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKIML------VDTVGFIRGIPPQIVDAFFVTL-S 253 (364)
T ss_dssp EEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEEEEE------EECCCBCSSCCGGGHHHHHHHH-H
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEEEEE------EeCCCchhcCCHHHHHHHHHHH-H
Confidence 499999999999999999999765 567899999865422 2246666665532 22222 2
Q ss_pred HHh------cCCC-CCCHHHHHHHHHHhcHHHHHHhC--CCCccchhcCCCCCCChHHHHHHhHH----Hhh-ccCCCEE
Q 000984 479 NIA------YGKD-DATTEEIRVATELANAAKFIDKL--PQGIDTLVGEHGTQLSGGQKQRIAIA----RAI-LKDPRIL 544 (1198)
Q Consensus 479 Ni~------~~~~-~~~~~~~~~~~~~~~~~~~i~~l--~~g~~t~v~~~g~~lSgGqkqri~lA----Ral-~~~~~il 544 (1198)
.+. +..+ ...........+. ..+.+..+ ++----.|+.+...+|+|++||+.++ +++ ..++++
T Consensus 254 ~~~~aD~il~VvD~s~~~~~~~~~~~~--~~~~L~~l~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~- 330 (364)
T 2qtf_A 254 EAKYSDALILVIDSTFSENLLIETLQS--SFEILREIGVSGKPILVTLNKIDKINGDLYKKLDLVEKLSKELYSPIFDV- 330 (364)
T ss_dssp GGGGSSEEEEEEETTSCHHHHHHHHHH--HHHHHHHHTCCSCCEEEEEECGGGCCSCHHHHHHHHHHHHHHHCSCEEEE-
T ss_pred HHHhCCEEEEEEECCCCcchHHHHHHH--HHHHHHHhCcCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHhcCCCCcE-
Confidence 221 1111 0111111111111 11222222 11111223555556788899988877 666 444454
Q ss_pred EEeCCCCCCCHHhHHHHHHHHHHHh
Q 000984 545 LLDEATSALDAESEKVVQEALDRIM 569 (1198)
Q Consensus 545 llDe~ts~lD~~~~~~i~~~i~~~~ 569 (1198)
+|+|++|.+.-..+.+.|.+..
T Consensus 331 ---~~~SA~~g~gi~~L~~~I~~~l 352 (364)
T 2qtf_A 331 ---IPISALKRTNLELLRDKIYQLA 352 (364)
T ss_dssp ---EECBTTTTBSHHHHHHHHHHHH
T ss_pred ---EEEECCCCcCHHHHHHHHHHHh
Confidence 7999999998887777776543
|
| >3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A* | Back alignment and structure |
|---|
Probab=98.01 E-value=2.7e-06 Score=98.23 Aligned_cols=45 Identities=29% Similarity=0.319 Sum_probs=34.7
Q ss_pred ccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhc--cCCCCCCeEEECC
Q 000984 400 QIFSGFSISISSGTTAALVGQSGSGKSTVISLIER--FYDPQAGEVLIDG 447 (1198)
Q Consensus 400 ~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g--~~~~~~G~i~i~g 447 (1198)
.+|++++++++ .++|||++|||||||++.|.| ++++..|.+.-..
T Consensus 25 ~~l~~i~~~lp---~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p 71 (360)
T 3t34_A 25 SALPTLWDSLP---AIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRP 71 (360)
T ss_dssp CCC----CCCC---EEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSC
T ss_pred cccccccccCC---EEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcc
Confidence 47899999998 999999999999999999999 6677777665433
|
| >3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans} | Back alignment and structure |
|---|
Probab=98.01 E-value=3e-07 Score=110.90 Aligned_cols=90 Identities=29% Similarity=0.317 Sum_probs=64.2
Q ss_pred EEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCC-eEE-ECCcccCC-------CCh---HHHHhhcceeccccccccc
Q 000984 1066 LKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAG-HIT-LDGVEIQK-------LQL---KWLRQQMGLVSQEPVLFND 1133 (1198)
Q Consensus 1066 ~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G-~I~-IDG~dI~~-------i~l---~~LR~~IsiV~Qdp~LF~g 1133 (1198)
..+++|+.++|+|+||||||||+++|.+.+.|++| +|. +||.++.+ ++. ...++++++|+|+.
T Consensus 364 ~~~~~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~~~~~l~~~l~f~~~~r~~~~r~i~~v~q~l----- 438 (552)
T 3cr8_A 364 PRERQGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDIVRRHLSSELGFSKAHRDVNVRRIGFVASEI----- 438 (552)
T ss_dssp CGGGSCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHHHHHHTTSSCCCSHHHHHHHHHHHHHHHHHH-----
T ss_pred cccccceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCcHHHHhhccccCCCHHHHHHHHHHHHHHHHHH-----
Confidence 36889999999999999999999999999999887 785 99988743 222 23557789999983
Q ss_pred cHHHHHhcCCC---CCCCHHHHHHHHHHcc
Q 000984 1134 TIRANIAYGKG---GDATEAEIQAASEMAN 1160 (1198)
Q Consensus 1134 TIreNI~~g~~---~~~tdeei~~Al~~A~ 1160 (1198)
+..+|+.+... .....++++++++..+
T Consensus 439 ~~~~~ivi~~~~~~~~~~r~~~r~lL~~~g 468 (552)
T 3cr8_A 439 TKNRGIAICAPIAPYRQTRRDVRAMIEAVG 468 (552)
T ss_dssp HHTTCEEEECCCCCCHHHHHHHHHHHHTTS
T ss_pred HhcCCEEEEecCCccHHHHHHHHHHHHHcC
Confidence 34555544311 0123455666666554
|
| >3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X* | Back alignment and structure |
|---|
Probab=98.00 E-value=8.5e-07 Score=91.70 Aligned_cols=99 Identities=16% Similarity=0.143 Sum_probs=64.9
Q ss_pred ccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCc--ccCCCChH----HHHhhcceecccc-------
Q 000984 1062 RDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGV--EIQKLQLK----WLRQQMGLVSQEP------- 1128 (1198)
Q Consensus 1062 ~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~--dI~~i~l~----~LR~~IsiV~Qdp------- 1128 (1198)
+++++++.+| .++|||+||||||||+.+|..+..+..|...-.+. ++-.-+.. ..+..|.+++|+|
T Consensus 18 ~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~v~~~f~~~~~~~~~~ 96 (182)
T 3kta_A 18 KKVVIPFSKG-FTAIVGANGSGKSNIGDAILFVLGGLSAKAMRASRISDLIFAGSKNEPPAKYAEVAIYFNNEDRGFPID 96 (182)
T ss_dssp SCEEEECCSS-EEEEEECTTSSHHHHHHHHHHHTTCCCTGGGTCSSGGGGBCCCC----CCSCEEEEEEEECTTCCSSSS
T ss_pred ccEEEecCCC-cEEEECCCCCCHHHHHHHHHHHHcCCcccccccccchheeecccccCCCCceEEEEEEEeCCCcccccC
Confidence 6889999999 99999999999999999999988887776544332 11111110 2356799999986
Q ss_pred ---ccccccHHHH----HhcCCCCCCCHHHHHHHHHHcchH
Q 000984 1129 ---VLFNDTIRAN----IAYGKGGDATEAEIQAASEMANAH 1162 (1198)
Q Consensus 1129 ---~LF~gTIreN----I~~g~~~~~tdeei~~Al~~A~l~ 1162 (1198)
+.+..++..+ +.... ...+.+++.+.++..++.
T Consensus 97 ~~~~~i~r~~~~~~~~~~~i~g-~~~~~~~~~~~l~~~~l~ 136 (182)
T 3kta_A 97 EDEVVIRRRVYPDGRSSYWLNG-RRATRSEILDILTAAMIS 136 (182)
T ss_dssp SSEEEEEEEECTTSCEEEEETT-EEECHHHHHHHHHHTTCC
T ss_pred CcEEEEEEEEEeCCcEEEEECC-eEcCHHHHHHHHHHcCCC
Confidence 2233333221 11111 135678888888877654
|
| >3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A* | Back alignment and structure |
|---|
Probab=98.00 E-value=2.5e-06 Score=98.90 Aligned_cols=70 Identities=24% Similarity=0.342 Sum_probs=53.2
Q ss_pred EeeCCCEEEEEcCCCCCHHHHHHHH--hcccCCCC-----CeEEECCccc-CCCChHHHHhhcceeccccccccccHHHH
Q 000984 1067 KIRAGKTVALVGESGSGKSTVVSLL--QRFYDPDA-----GHITLDGVEI-QKLQLKWLRQQMGLVSQEPVLFNDTIRAN 1138 (1198)
Q Consensus 1067 ~I~~GekvaIVG~SGSGKSTL~~lL--~R~ydp~~-----G~I~IDG~dI-~~i~l~~LR~~IsiV~Qdp~LF~gTIreN 1138 (1198)
-|++|+.++|+||+|||||||+..| ....+++. +.|+||+.+. +...+..+++++++.+| ++.+|
T Consensus 174 GI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~~~a~~~gl~~~-------~vlen 246 (400)
T 3lda_A 174 GVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVSIAQRFGLDPD-------DALNN 246 (400)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHH-------HHHHT
T ss_pred CcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHHHHHHHcCCChH-------hHhhc
Confidence 5899999999999999999999944 45555543 4899999873 33334556678898877 57788
Q ss_pred HhcCC
Q 000984 1139 IAYGK 1143 (1198)
Q Consensus 1139 I~~g~ 1143 (1198)
+.+..
T Consensus 247 i~~~~ 251 (400)
T 3lda_A 247 VAYAR 251 (400)
T ss_dssp EEEEE
T ss_pred EEEec
Confidence 87753
|
| >3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=97.99 E-value=2e-06 Score=90.42 Aligned_cols=45 Identities=16% Similarity=0.083 Sum_probs=25.1
Q ss_pred EcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccC
Q 000984 392 SYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFY 436 (1198)
Q Consensus 392 ~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~ 436 (1198)
+|+..+..+.++|+||++++|+.++|+|++||||||+.+.|.+.+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 5 HHHSSGVDLGTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp -------------------CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cCCCCCCCCCCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 455556678999999999999999999999999999999999876
|
| >4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP} | Back alignment and structure |
|---|
Probab=97.99 E-value=1.1e-06 Score=92.52 Aligned_cols=58 Identities=16% Similarity=0.191 Sum_probs=41.7
Q ss_pred EEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcceEEEcCCC
Q 000984 407 ISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEP 469 (1198)
Q Consensus 407 l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~ 469 (1198)
++.++|++++|+|++|||||||+++|.+.+ |.+.++|.++.... ...+..+++++|++
T Consensus 24 m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~----g~~~i~~d~~~~~~-~~~~~~~g~~~~~~ 81 (200)
T 4eun_A 24 MTGEPTRHVVVMGVSGSGKTTIAHGVADET----GLEFAEADAFHSPE-NIATMQRGIPLTDE 81 (200)
T ss_dssp ----CCCEEEEECCTTSCHHHHHHHHHHHH----CCEEEEGGGGSCHH-HHHHHHTTCCCCHH
T ss_pred hcCCCCcEEEEECCCCCCHHHHHHHHHHhh----CCeEEcccccccHH-HHHHHhcCCCCCCc
Confidence 566789999999999999999999999987 89999987764211 11123467777754
|
| >3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=97.98 E-value=2.3e-06 Score=90.59 Aligned_cols=67 Identities=21% Similarity=0.178 Sum_probs=43.8
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHhccCCC-CCCeEE----------ECCeecCCcCHHHHhcceEEEcCCCCCCcccHHH
Q 000984 410 SSGTTAALVGQSGSGKSTVISLIERFYDP-QAGEVL----------IDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKD 478 (1198)
Q Consensus 410 ~~g~~~~ivG~~GsGKStl~~~l~g~~~~-~~G~i~----------i~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~ 478 (1198)
++|++++|+||||||||||++.|.+.+++ ..+.+. .+|++...++...+++.+ .|+..+..+++.+
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~~~~~~~~~~~tr~~~~~e~~g~~y~~~~~~~f~~~~---~~~~~le~~~~~~ 82 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPETSFDYSISMTTRLPREGEQDGVDYYFRSREVFEQAI---KDGKMLEYAEYVG 82 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTTCCCEECCCEESSCCCTTCCBTTTBEECCHHHHHHHH---HTTCEEEEEEETT
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCCCcEEEEEecccccCcCcccCCceeEEecHHHHHHHH---hcCcEEEEEEEcc
Confidence 57999999999999999999999999876 323222 234444444444444432 3444555555555
Q ss_pred H
Q 000984 479 N 479 (1198)
Q Consensus 479 N 479 (1198)
|
T Consensus 83 ~ 83 (208)
T 3tau_A 83 N 83 (208)
T ss_dssp E
T ss_pred c
Confidence 5
|
| >1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A | Back alignment and structure |
|---|
Probab=97.98 E-value=1.7e-06 Score=99.43 Aligned_cols=65 Identities=17% Similarity=0.262 Sum_probs=52.0
Q ss_pred cccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHhhcceeccccccc
Q 000984 1059 QVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLF 1131 (1198)
Q Consensus 1059 ~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~~i~l~~LR~~IsiV~Qdp~LF 1131 (1198)
.+|+++|+.+++|+.++|+||+|||||||+++|.+.+ +|.+..- +. +.+.++..++.+||...+|
T Consensus 157 ~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~---~g~~~~~--~~---~~~~~~~~lg~~~q~~~~l 221 (377)
T 1svm_A 157 DFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLELC---GGKALNV--NL---PLDRLNFELGVAIDQFLVV 221 (377)
T ss_dssp HHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHHH---CCEEECC--SS---CTTTHHHHHGGGTTCSCEE
T ss_pred HHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhhc---CCcEEEE--ec---cchhHHHHHHHhcchhHHH
Confidence 5899999999999999999999999999999999965 5777651 11 1233455689999998753
|
| >3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A* | Back alignment and structure |
|---|
Probab=97.96 E-value=3.4e-07 Score=96.41 Aligned_cols=51 Identities=27% Similarity=0.395 Sum_probs=44.5
Q ss_pred CccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeE--EECCeec
Q 000984 399 EQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV--LIDGINL 450 (1198)
Q Consensus 399 ~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i--~i~g~~~ 450 (1198)
....+..++..++|++++|+|++||||||++++|.+.+. ..|.+ .+||.++
T Consensus 12 ~~~~~~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~-~~G~~~~~~d~d~~ 64 (200)
T 3uie_A 12 VEKVDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQMLY-QKGKLCYILDGDNV 64 (200)
T ss_dssp CCHHHHHHHHTSCCEEEEEECSTTSSHHHHHHHHHHHHH-HTTCCEEEEEHHHH
T ss_pred cCHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHH-hcCceEEEecCchh
Confidence 346778888889999999999999999999999999987 77988 8887554
|
| >1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A | Back alignment and structure |
|---|
Probab=97.95 E-value=2.9e-06 Score=95.63 Aligned_cols=68 Identities=21% Similarity=0.244 Sum_probs=55.5
Q ss_pred ccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCH----HHH-----hcceEEE-cCCC
Q 000984 402 FSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQL----QWI-----RKKIGLV-SQEP 469 (1198)
Q Consensus 402 l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~----~~~-----r~~i~~v-~Q~~ 469 (1198)
+++++|++++|+.++|+|++||||||++..|.+.+.+.+|+|.+.+.|+..... ..+ +..+.++ +|.+
T Consensus 95 ~~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D~~r~~a~~ql~~~~~~~~~~~l~vip~~~~ 172 (320)
T 1zu4_A 95 KYRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADTFRAGATQQLEEWIKTRLNNKVDLVKANKL 172 (320)
T ss_dssp -CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCSCHHHHHHHHHHHTTTSCTTEEEECCSST
T ss_pred ccCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHhccccCCceEEeCCCC
Confidence 467888888999999999999999999999999999999999998888765431 233 5678888 6653
|
| >2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=97.94 E-value=2.8e-06 Score=89.68 Aligned_cols=35 Identities=29% Similarity=0.221 Sum_probs=29.5
Q ss_pred EEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCC
Q 000984 407 ISISSGTTAALVGQSGSGKSTVISLIERFYDPQAG 441 (1198)
Q Consensus 407 l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G 441 (1198)
+++++|++++|+||+||||||+++.|.+.+.|..|
T Consensus 1 m~i~~g~~i~l~G~~GsGKSTl~~~L~~~~~~~~~ 35 (207)
T 2j41_A 1 MDNEKGLLIVLSGPSGVGKGTVRKRIFEDPSTSYK 35 (207)
T ss_dssp ---CCCCEEEEECSTTSCHHHHHHHHHHCTTCCEE
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHhhCCCeE
Confidence 46889999999999999999999999999877544
|
| >3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans} | Back alignment and structure |
|---|
Probab=97.91 E-value=8.2e-07 Score=107.15 Aligned_cols=71 Identities=28% Similarity=0.338 Sum_probs=53.0
Q ss_pred EEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCC-eEE-ECCeecCC-------cCH---HHHhcceEEEcCCCCCCcc
Q 000984 407 ISISSGTTAALVGQSGSGKSTVISLIERFYDPQAG-EVL-IDGINLKE-------FQL---QWIRKKIGLVSQEPVLFTG 474 (1198)
Q Consensus 407 l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G-~i~-i~g~~~~~-------~~~---~~~r~~i~~v~Q~~~l~~~ 474 (1198)
..+++|+.++|+|+||||||||+++|.|.+.|.+| ++. +||.++.+ ++. ...++++++++|+.
T Consensus 364 ~~~~~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~~~~~l~~~l~f~~~~r~~~~r~i~~v~q~l----- 438 (552)
T 3cr8_A 364 PRERQGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDIVRRHLSSELGFSKAHRDVNVRRIGFVASEI----- 438 (552)
T ss_dssp CGGGSCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHHHHHHTTSSCCCSHHHHHHHHHHHHHHHHHH-----
T ss_pred cccccceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCcHHHHhhccccCCCHHHHHHHHHHHHHHHHHH-----
Confidence 35789999999999999999999999999999887 785 89976532 122 22345678888862
Q ss_pred cHHHHHhc
Q 000984 475 SIKDNIAY 482 (1198)
Q Consensus 475 ti~~Ni~~ 482 (1198)
+..+|+.+
T Consensus 439 ~~~~~ivi 446 (552)
T 3cr8_A 439 TKNRGIAI 446 (552)
T ss_dssp HHTTCEEE
T ss_pred HhcCCEEE
Confidence 44455544
|
| >2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2} | Back alignment and structure |
|---|
Probab=97.91 E-value=1.7e-06 Score=93.04 Aligned_cols=68 Identities=22% Similarity=0.132 Sum_probs=54.7
Q ss_pred ccccccceE-EeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHH---hhcceecccc
Q 000984 1058 VQVFRDLNL-KIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLR---QQMGLVSQEP 1128 (1198)
Q Consensus 1058 ~~vL~~is~-~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~~i~l~~LR---~~IsiV~Qdp 1128 (1198)
.+.|+++.. .+++|+.++|+||+|||||||++.|++...+.+|.+.+.+.+.. .+.++ ..+++.+|+.
T Consensus 9 ~~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~~~~---~~~~~~~~~~~~~~~~~~ 80 (235)
T 2w0m_A 9 ILDFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTEES---RDSIIRQAKQFNWDFEEY 80 (235)
T ss_dssp CHHHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEESSSC---HHHHHHHHHHTTCCCGGG
T ss_pred chHHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEcccC---HHHHHHHHHHhcchHHHH
Confidence 357999998 89999999999999999999999999888888899988776553 33333 3567766654
|
| >3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X* | Back alignment and structure |
|---|
Probab=97.86 E-value=3.8e-06 Score=86.72 Aligned_cols=66 Identities=20% Similarity=0.171 Sum_probs=47.2
Q ss_pred cceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCe--ecCCcCH----HHHhcceEEEcCCC
Q 000984 403 SGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGI--NLKEFQL----QWIRKKIGLVSQEP 469 (1198)
Q Consensus 403 ~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~--~~~~~~~----~~~r~~i~~v~Q~~ 469 (1198)
+++++++.+| +++|+||||||||||+.+|.+.+.+..|...-.+. ++-..+. ...+..|.+++|+|
T Consensus 18 ~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~v~~~f~~~ 89 (182)
T 3kta_A 18 KKVVIPFSKG-FTAIVGANGSGKSNIGDAILFVLGGLSAKAMRASRISDLIFAGSKNEPPAKYAEVAIYFNNE 89 (182)
T ss_dssp SCEEEECCSS-EEEEEECTTSSHHHHHHHHHHHTTCCCTGGGTCSSGGGGBCCCC----CCSCEEEEEEEECT
T ss_pred ccEEEecCCC-cEEEECCCCCCHHHHHHHHHHHHcCCcccccccccchheeecccccCCCCceEEEEEEEeCC
Confidence 6889999999 99999999999999999999988887765422221 1100000 01245788898886
|
| >1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A* | Back alignment and structure |
|---|
Probab=97.84 E-value=6.9e-06 Score=84.17 Aligned_cols=55 Identities=25% Similarity=0.248 Sum_probs=43.4
Q ss_pred eCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHh-hcceeccccc
Q 000984 1069 RAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQ-QMGLVSQEPV 1129 (1198)
Q Consensus 1069 ~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~~i~l~~LR~-~IsiV~Qdp~ 1129 (1198)
.+|+.++|+|++||||||+++.|.+.+ |.+.+||.++.. ...+++ .++.++|++.
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~----g~~~i~~d~~~~--~~~~~~~~~g~~~~~~~ 61 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQL----HAAFLDGDFLHP--RRNIEKMASGEPLNDDD 61 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH----TCEEEEGGGGCC--HHHHHHHHTTCCCCHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhh----CcEEEeCccccc--hHHHHHhhcCcCCCccc
Confidence 468999999999999999999999876 899999988763 223333 4677777643
|
| >3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=97.82 E-value=5.5e-05 Score=86.00 Aligned_cols=58 Identities=21% Similarity=0.248 Sum_probs=42.2
Q ss_pred EEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeE-EECCeecCCcCHHHHhcceEEEcCC
Q 000984 408 SISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV-LIDGINLKEFQLQWIRKKIGLVSQE 468 (1198)
Q Consensus 408 ~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i-~i~g~~~~~~~~~~~r~~i~~v~Q~ 468 (1198)
-+++|+++.|.||+|||||||+..+++...+..|.+ ++++.+..+ ....+++++.+|+
T Consensus 57 Gi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~~---~~ra~rlgv~~~~ 115 (356)
T 3hr8_A 57 GYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHALD---PVYAKNLGVDLKS 115 (356)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCC---HHHHHHHTCCGGG
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecccccc---hHHHHHcCCchhh
Confidence 378999999999999999999999999887777765 556543221 1133456665554
|
| >2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B} | Back alignment and structure |
|---|
Probab=97.81 E-value=1.5e-05 Score=79.30 Aligned_cols=47 Identities=26% Similarity=0.332 Sum_probs=42.1
Q ss_pred ccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCC--eEEECCcccCCC
Q 000984 1060 VFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAG--HITLDGVEIQKL 1112 (1198)
Q Consensus 1060 vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G--~I~IDG~dI~~i 1112 (1198)
+|+++ +|+.++|+|++|+|||||++++.+.+.+ +| .+++++.++..-
T Consensus 30 ~l~~~-----~g~~~~l~G~~G~GKTtL~~~i~~~~~~-~g~~~~~~~~~~~~~~ 78 (149)
T 2kjq_A 30 VLRHK-----HGQFIYVWGEEGAGKSHLLQAWVAQALE-AGKNAAYIDAASMPLT 78 (149)
T ss_dssp HCCCC-----CCSEEEEESSSTTTTCHHHHHHHHHHHT-TTCCEEEEETTTSCCC
T ss_pred HHHhc-----CCCEEEEECCCCCCHHHHHHHHHHHHHh-cCCcEEEEcHHHhhHH
Confidence 67777 9999999999999999999999999987 68 899999887654
|
| >3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=97.80 E-value=6.8e-07 Score=100.32 Aligned_cols=124 Identities=11% Similarity=0.190 Sum_probs=71.1
Q ss_pred ccccceeEEEeCCC------EEEEEcCCCCcHHHHHHHHhccCCC--CCCeEEECCeecCCcCHHHHhcceEEEcCCCCC
Q 000984 400 QIFSGFSISISSGT------TAALVGQSGSGKSTVISLIERFYDP--QAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVL 471 (1198)
Q Consensus 400 ~~l~~i~l~i~~g~------~~~ivG~~GsGKStl~~~l~g~~~~--~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l 471 (1198)
..|++++..+..++ ++||+||||||||||+++|.+++.+ .+|. ++++++|.+.
T Consensus 74 ~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~-------------------v~~i~~D~f~ 134 (321)
T 3tqc_A 74 QTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPN-------------------VEVITTDGFL 134 (321)
T ss_dssp HHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHTTSTTCCC-------------------EEEEEGGGGB
T ss_pred HHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhcccCCCCe-------------------EEEEeecccc
Confidence 45666777776665 8999999999999999999999873 4444 4555666554
Q ss_pred CcccHHHHH----hcCCCC-CCHHHHHHHHHHhcHHHHHHhCCCCc-cchhcCCCCCCChHHHHHHhHHHhhccCCCEEE
Q 000984 472 FTGSIKDNI----AYGKDD-ATTEEIRVATELANAAKFIDKLPQGI-DTLVGEHGTQLSGGQKQRIAIARAILKDPRILL 545 (1198)
Q Consensus 472 ~~~ti~~Ni----~~~~~~-~~~~~~~~~~~~~~~~~~i~~l~~g~-~t~v~~~g~~lSgGqkqri~lARal~~~~~ill 545 (1198)
.....++.. .+|.|. .+.+...+ .+..+..|. ...+- .+|-+..+|+.-+......|+|+|
T Consensus 135 ~~~~~l~~~~~~~~~g~P~~~D~~~l~~---------~L~~L~~g~~~v~~P----~yd~~~~~r~~~~~~~v~~~dIVI 201 (321)
T 3tqc_A 135 YSNAKLEKQGLMKRKGFPESYDMPSLLR---------VLNAIKSGQRNVRIP----VYSHHYYDIVRGQYEIVDQPDIVI 201 (321)
T ss_dssp CCHHHHHHTTCGGGTTSGGGBCHHHHHH---------HHHHHHTTCSSEEEE----EEETTTTEEEEEEEEEECSCSEEE
T ss_pred cchhhhhhHHHHhhccCcccccHHHHHH---------HHHhhhccccccccc----hhhhhccccccCceeeccCCCEEE
Confidence 443333321 123332 22233322 233333343 11110 122222334433445667899999
Q ss_pred EeCCCCCCCH
Q 000984 546 LDEATSALDA 555 (1198)
Q Consensus 546 lDe~ts~lD~ 555 (1198)
++-+..-.|.
T Consensus 202 vEGi~lL~~~ 211 (321)
T 3tqc_A 202 LEGLNILQTG 211 (321)
T ss_dssp EECTTTTCCC
T ss_pred EEcccccccc
Confidence 9999876554
|
| >1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A* | Back alignment and structure |
|---|
Probab=97.73 E-value=6.1e-06 Score=92.12 Aligned_cols=63 Identities=24% Similarity=0.216 Sum_probs=55.6
Q ss_pred EEEeeeeEECCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCC
Q 000984 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKL 1112 (1198)
Q Consensus 1043 I~f~nVsf~Y~~~~~~~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~~i 1112 (1198)
+.++++++.|+.. . ++++|+ +|+.++++|++|+||||++..|.+++.+..|+|.+.|.|+..-
T Consensus 77 ~~~~~l~~~~~~~---~--~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~~~ 139 (295)
T 1ls1_A 77 TVYEALKEALGGE---A--RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRP 139 (295)
T ss_dssp HHHHHHHHHTTSS---C--CCCCCC--SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSCH
T ss_pred HHHHHHHHHHCCC---C--ceeecC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcccH
Confidence 6778899999532 1 789998 9999999999999999999999999999999999999998653
|
| >2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=97.71 E-value=9.2e-05 Score=85.14 Aligned_cols=61 Identities=16% Similarity=0.193 Sum_probs=47.1
Q ss_pred CCCChHHHHHHhHHHhhccCCCEEEEe-CCCCCCCHHhHHHHHHHHHHHhCCCeEEEEecCcc
Q 000984 521 TQLSGGQKQRIAIARAILKDPRILLLD-EATSALDAESEKVVQEALDRIMVNRTTVIVAHRLS 582 (1198)
Q Consensus 521 ~~lSgGqkqri~lARal~~~~~illlD-e~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~ 582 (1198)
..+|+|++|++. +.+...++-++++| ++.+++|.+....+.+.+.....++.+|+|.+..+
T Consensus 230 ~~~~~~~~~~~~-~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~~~piilV~NK~D 291 (357)
T 2e87_A 230 SERNEIEKQAIL-ALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFKDLPFLVVINKID 291 (357)
T ss_dssp TTSCHHHHHHHH-GGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTTTSCEEEEECCTT
T ss_pred hhhhHHHHHHHH-HHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcCCCCEEEEEECcc
Confidence 457999999887 66666777889999 99999999887777666766555788888884443
|
| >2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B* | Back alignment and structure |
|---|
Probab=97.71 E-value=2.7e-05 Score=98.52 Aligned_cols=65 Identities=14% Similarity=0.156 Sum_probs=49.8
Q ss_pred CCCChHHHHHHhHHHhhccCCCEEEEeCCCC-CCCHHhHHHHHHHHHHHhCC-CeEEE-EecCcchhh
Q 000984 521 TQLSGGQKQRIAIARAILKDPRILLLDEATS-ALDAESEKVVQEALDRIMVN-RTTVI-VAHRLSTVR 585 (1198)
Q Consensus 521 ~~lSgGqkqri~lARal~~~~~illlDe~ts-~lD~~~~~~i~~~i~~~~~~-~t~i~-itH~~~~~~ 585 (1198)
.-+|+|+.+|..++++++.+++++|+|||.. ++|.+....+.+.+.....+ +++++ .||..+.+.
T Consensus 189 ~v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~~~~~iIl~SAT~~~~~l~ 256 (773)
T 2xau_A 189 KYMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRRPDLKIIIMSATLDAEKFQ 256 (773)
T ss_dssp EEEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHCTTCEEEEEESCSCCHHHH
T ss_pred EEECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHHHHHhCCCceEEEEeccccHHHHH
Confidence 3468999999999999999999999999997 89987655555555555444 45555 478876554
|
| >1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=97.69 E-value=1.3e-05 Score=84.22 Aligned_cols=49 Identities=16% Similarity=0.153 Sum_probs=42.8
Q ss_pred EeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChH
Q 000984 1067 KIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLK 1115 (1198)
Q Consensus 1067 ~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~~i~l~ 1115 (1198)
..++|+.+||+|++||||||+++.|.+++.+.+|.|.+.|.|....+..
T Consensus 18 ~~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d~~~~~~~ 66 (201)
T 1rz3_A 18 KTAGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDDHIVERA 66 (201)
T ss_dssp CCSSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGCCCHH
T ss_pred ccCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccCcccCCHH
Confidence 4678999999999999999999999999998899999988887655543
|
| >4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=97.68 E-value=5.9e-05 Score=85.10 Aligned_cols=108 Identities=10% Similarity=0.203 Sum_probs=68.7
Q ss_pred ccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcceEEEcCCCCCCcccHHHH
Q 000984 400 QIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDN 479 (1198)
Q Consensus 400 ~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~N 479 (1198)
+-|+.+.--+++|+++.|.|++|+|||||+.-++.......+ .+.|++=
T Consensus 34 ~~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~-------------------~Vl~fSl------------ 82 (338)
T 4a1f_A 34 VQLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSALNDDR-------------------GVAVFSL------------ 82 (338)
T ss_dssp HHHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTC-------------------EEEEEES------------
T ss_pred hHHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCC-------------------eEEEEeC------------
Confidence 356665556899999999999999999999888765433222 3444331
Q ss_pred HhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhhccCCCEEEEeCCCCCCC
Q 000984 480 IAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALD 554 (1198)
Q Consensus 480 i~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal~~~~~illlDe~ts~lD 554 (1198)
+.+.+++..-+-.. ...++ ++.... ..||.+++||++.|...+.+++++|.|+|..++|
T Consensus 83 ------Ems~~ql~~Rlls~-----~~~v~--~~~l~~---g~Ls~~e~~~l~~a~~~l~~~~l~I~d~~~~si~ 141 (338)
T 4a1f_A 83 ------EMSAEQLALRALSD-----LTSIN--MHDLES---GRLDDDQWENLAKCFDHLSQKKLFFYDKSYVRIE 141 (338)
T ss_dssp ------SSCHHHHHHHHHHH-----HHCCC--HHHHHH---TCCCHHHHHHHHHHHHHHHHSCEEEECCTTCCHH
T ss_pred ------CCCHHHHHHHHHHH-----hhCCC--HHHHhc---CCCCHHHHHHHHHHHHHHhcCCeEEeCCCCCcHH
Confidence 12334332211110 01110 111111 2699999999999999999999999999876543
|
| >3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A | Back alignment and structure |
|---|
Probab=97.66 E-value=7.3e-06 Score=92.25 Aligned_cols=54 Identities=15% Similarity=0.220 Sum_probs=49.3
Q ss_pred cccEEEEeEEEEcCCCCCCcccc--------------ceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccC
Q 000984 381 RGDIELRDVYFSYPARPNEQIFS--------------GFSISISSGTTAALVGQSGSGKSTVISLIERFY 436 (1198)
Q Consensus 381 ~g~i~~~~v~~~y~~~~~~~~l~--------------~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~ 436 (1198)
.+.+.|+|++|.||. ++..|+ |+++.+.+|++++|+|++|||||||++.|.+..
T Consensus 131 ~~ri~Fe~ltp~yP~--er~~Le~~~~~~~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i 198 (422)
T 3ice_A 131 RNKILFENLTPLHAN--SRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSI 198 (422)
T ss_dssp TTSCCTTTSCEESCC--SBCCCCCTTCCTTHHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHH
T ss_pred cCCceeccccccCCC--CccccccCCCCcccccceeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHH
Confidence 567999999999985 356888 899999999999999999999999999999976
|
| >3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=97.64 E-value=1.4e-05 Score=89.67 Aligned_cols=51 Identities=18% Similarity=0.318 Sum_probs=41.7
Q ss_pred cccccceEEeeCCC------EEEEEcCCCCCHHHHHHHHhcccC--CCCCeEEECCccc
Q 000984 1059 QVFRDLNLKIRAGK------TVALVGESGSGKSTVVSLLQRFYD--PDAGHITLDGVEI 1109 (1198)
Q Consensus 1059 ~vL~~is~~I~~Ge------kvaIVG~SGSGKSTL~~lL~R~yd--p~~G~I~IDG~dI 1109 (1198)
..|++++..+.+++ .+||+|+|||||||+++.|.++++ |++|.+.+-+.|-
T Consensus 74 ~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v~~i~~D~ 132 (321)
T 3tqc_A 74 QTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPNVEVITTDG 132 (321)
T ss_dssp HHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGG
T ss_pred HHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhcccCCCCeEEEEeecc
Confidence 57889999988887 899999999999999999999998 4566654444443
|
| >1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.62 E-value=2.6e-05 Score=82.17 Aligned_cols=70 Identities=17% Similarity=0.163 Sum_probs=40.3
Q ss_pred CChHHHHHHhHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhCCCeEEEEecCcch---hhccCEEEEEeC
Q 000984 523 LSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLST---VRNADMIAVIHR 595 (1198)
Q Consensus 523 lSgGqkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~---~~~~d~i~~l~~ 595 (1198)
.+.|+.+|..+++.++.+|+.+-.+ .+.+++...+.+.+.+... .+.++|+-+|.+.. ...||.+++++-
T Consensus 60 ~~~g~~~r~~l~~~~f~~~~~~~~l--~~~~~p~v~~~~~~~~~~~-~~~~vv~~~~~l~e~~~~~~~d~vi~l~~ 132 (206)
T 1jjv_A 60 TEQGELNRAALRERVFNHDEDKLWL--NNLLHPAIRERMKQKLAEQ-TAPYTLFVVPLLIENKLTALCDRILVVDV 132 (206)
T ss_dssp ------CHHHHHHHHHTCHHHHHHH--HHHHHHHHHHHHHHHHHTC-CSSEEEEECTTTTTTTCGGGCSEEEEEEC
T ss_pred ccCccccHHHHHHHHhCCHHHHHHH--HhccCHHHHHHHHHHHHhc-CCCEEEEEechhhhcCcHhhCCEEEEEEC
Confidence 3678999999999988887643322 2234454444444444332 35577777887654 356899998863
|
| >2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A* | Back alignment and structure |
|---|
Probab=97.60 E-value=3.9e-05 Score=86.98 Aligned_cols=29 Identities=24% Similarity=0.358 Sum_probs=26.2
Q ss_pred EEeCCCEEEEEcCCCCcHHHHHHHHhccC
Q 000984 408 SISSGTTAALVGQSGSGKSTVISLIERFY 436 (1198)
Q Consensus 408 ~i~~g~~~~ivG~~GsGKStl~~~l~g~~ 436 (1198)
-+++|+.+.|.||+|||||||+..++...
T Consensus 103 Gl~~G~i~~i~G~~GsGKT~la~~la~~~ 131 (324)
T 2z43_A 103 GIETRTMTEFFGEFGSGKTQLCHQLSVNV 131 (324)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCCCcEEEEECCCCCCHhHHHHHHHHHH
Confidence 57899999999999999999998888754
|
| >1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1 | Back alignment and structure |
|---|
Probab=97.55 E-value=2e-05 Score=91.72 Aligned_cols=34 Identities=32% Similarity=0.441 Sum_probs=32.7
Q ss_pred cccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcc
Q 000984 1061 FRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRF 1094 (1198)
Q Consensus 1061 L~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ 1094 (1198)
-++|+|++++|+.|||||++|||||||++.|.+.
T Consensus 147 ~~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~ 180 (416)
T 1udx_A 147 KRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRA 180 (416)
T ss_dssp EEEEEEEECCSCSEEEECCGGGCHHHHHHHHCSS
T ss_pred EeeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcC
Confidence 4799999999999999999999999999999997
|
| >3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A | Back alignment and structure |
|---|
Probab=97.53 E-value=2.1e-05 Score=95.55 Aligned_cols=47 Identities=19% Similarity=0.334 Sum_probs=40.7
Q ss_pred ccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECC
Q 000984 400 QIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDG 447 (1198)
Q Consensus 400 ~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g 447 (1198)
.+++++++++ +|+.++|+||+|||||||+++|.+.+.+..|+|.++|
T Consensus 97 ~~l~~~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~ 143 (543)
T 3m6a_A 97 LAVQKLTKSL-KGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGG 143 (543)
T ss_dssp HHHHHHSSSC-CSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC
T ss_pred HHHHHhcccC-CCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEecc
Confidence 4677888888 8999999999999999999999999988777776554
|
| >2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A* | Back alignment and structure |
|---|
Probab=97.52 E-value=1.7e-05 Score=81.59 Aligned_cols=42 Identities=43% Similarity=0.532 Sum_probs=36.2
Q ss_pred eCCCEEEEEcCCCCCHHHHHHHHhcccCCCCC--eEEECCcccCC
Q 000984 1069 RAGKTVALVGESGSGKSTVVSLLQRFYDPDAG--HITLDGVEIQK 1111 (1198)
Q Consensus 1069 ~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G--~I~IDG~dI~~ 1111 (1198)
++|+.++|+|++||||||++++|.+.+.+ .| .|.+||.+++.
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~-~g~~~i~~d~~~~~~ 46 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLVC-HGIPCYTLDGDNIRQ 46 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHH-TTCCEEEEEHHHHTT
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhh-CCCcEEEECChHHHH
Confidence 47999999999999999999999998876 57 78889877754
|
| >2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A* | Back alignment and structure |
|---|
Probab=97.52 E-value=2.8e-05 Score=82.72 Aligned_cols=57 Identities=18% Similarity=0.081 Sum_probs=44.2
Q ss_pred cccccceE-EeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHh
Q 000984 1059 QVFRDLNL-KIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQ 1119 (1198)
Q Consensus 1059 ~vL~~is~-~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~~i~l~~LR~ 1119 (1198)
+.|+++.. -+++|+.++|+|++||||||+++.|.+ .+..+.+++++.+ ..+.+.+++
T Consensus 7 ~~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~--~~~~~v~~i~~~~--~~~~~~~~~ 64 (220)
T 2cvh_A 7 KSLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL--LSGKKVAYVDTEG--GFSPERLVQ 64 (220)
T ss_dssp HHHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH--HHCSEEEEEESSC--CCCHHHHHH
T ss_pred HHHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH--HcCCcEEEEECCC--CCCHHHHHH
Confidence 46777776 799999999999999999999999999 4555677887654 234444443
|
| >1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B* | Back alignment and structure |
|---|
Probab=97.50 E-value=1.6e-05 Score=82.79 Aligned_cols=38 Identities=37% Similarity=0.521 Sum_probs=33.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcccCC-----------CCCeEEECCcccC
Q 000984 1073 TVALVGESGSGKSTVVSLLQRFYDP-----------DAGHITLDGVEIQ 1110 (1198)
Q Consensus 1073 kvaIVG~SGSGKSTL~~lL~R~ydp-----------~~G~I~IDG~dI~ 1110 (1198)
+++|||++|||||||++.|.+...+ .+|+|.+||.++.
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~ 79 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIK 79 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEE
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEE
Confidence 7999999999999999999997765 5789999997653
|
| >1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10 | Back alignment and structure |
|---|
Probab=97.49 E-value=3e-05 Score=86.58 Aligned_cols=64 Identities=20% Similarity=0.328 Sum_probs=50.4
Q ss_pred ceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCCh----HHH--Hhhcceeccc
Q 000984 1064 LNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQL----KWL--RQQMGLVSQE 1127 (1198)
Q Consensus 1064 is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~~i~l----~~L--R~~IsiV~Qd 1127 (1198)
++++.++|+.++|||++||||||++..|.+++.+++|+|.+.+.|+..... ..+ +..+.+++|.
T Consensus 97 ~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~ 166 (306)
T 1vma_A 97 LNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRAAAIEQLKIWGERVGATVISHS 166 (306)
T ss_dssp CCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHHHHHHTCEEECCS
T ss_pred CcccCCCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccccccHHHHHHHHHHHHHcCCcEEecC
Confidence 455678899999999999999999999999999999999999988754321 122 2356677764
|
| >2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A | Back alignment and structure |
|---|
Probab=97.48 E-value=0.00026 Score=82.39 Aligned_cols=149 Identities=21% Similarity=0.226 Sum_probs=85.1
Q ss_pred cceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHH-HhcceEEEcCCCCCCcccHHHHHh
Q 000984 403 SGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQW-IRKKIGLVSQEPVLFTGSIKDNIA 481 (1198)
Q Consensus 403 ~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~-~r~~i~~v~Q~~~l~~~ti~~Ni~ 481 (1198)
++++|+ +|+.++++|++||||||++..|.+.+.+..|+|.+.+.|+......+ ++.. .-+.|+.
T Consensus 91 ~~i~l~--~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~r~aa~~qL~~~-------------~~~~gv~ 155 (425)
T 2ffh_A 91 RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLL-------------GEKVGVP 155 (425)
T ss_dssp CCCCCC--SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSSCHHHHHHHHHH-------------HHHHTCC
T ss_pred ccccCC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeeccccCchhHHHHHHh-------------cccCCcc
Confidence 567777 89999999999999999999999999999999999887765543322 2110 0011221
Q ss_pred c--CCCCCCHHHHHHHHHHhcHHHHHHhC-CCCccchhcCCCCCCC---hHHHHHHhHHHhhccCCCEEEEeCCCCCCCH
Q 000984 482 Y--GKDDATTEEIRVATELANAAKFIDKL-PQGIDTLVGEHGTQLS---GGQKQRIAIARAILKDPRILLLDEATSALDA 555 (1198)
Q Consensus 482 ~--~~~~~~~~~~~~~~~~~~~~~~i~~l-~~g~~t~v~~~g~~lS---gGqkqri~lARal~~~~~illlDe~ts~lD~ 555 (1198)
+ ..+..+..++.. +.+..+ .+++|..+=+.+..+. .-..+...+++++..++-+|++| ++++.|.
T Consensus 156 v~~~~~~~~p~~i~~--------~~l~~~~~~~~DvVIIDTaG~l~~d~~l~~el~~i~~~~~pd~vlLVvD-a~tgq~a 226 (425)
T 2ffh_A 156 VLEVMDGESPESIRR--------RVEEKARLEARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLD-AMTGQEA 226 (425)
T ss_dssp EEECCTTCCHHHHHH--------HHHHHHHHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEE-GGGTTHH
T ss_pred EEecCCCCCHHHHHH--------HHHHHHHHCCCCEEEEcCCCcccccHHHHHHHHHhhhccCCceEEEEEe-ccchHHH
Confidence 1 011123333311 122222 2466655433222332 34667778888886666677777 5555444
Q ss_pred HhHHHHHHHHHHHhCCCeEEEEec
Q 000984 556 ESEKVVQEALDRIMVNRTTVIVAH 579 (1198)
Q Consensus 556 ~~~~~i~~~i~~~~~~~t~i~itH 579 (1198)
.. .+ +.+.+. -+.+-|++|+
T Consensus 227 v~--~a-~~f~~~-l~i~GVIlTK 246 (425)
T 2ffh_A 227 LS--VA-RAFDEK-VGVTGLVLTK 246 (425)
T ss_dssp HH--HH-HHHHHH-TCCCEEEEES
T ss_pred HH--HH-HHHHhc-CCceEEEEeC
Confidence 32 11 222222 2346667774
|
| >1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=97.45 E-value=4.7e-05 Score=87.53 Aligned_cols=57 Identities=21% Similarity=0.281 Sum_probs=36.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhc-ccCCCCCeEEECCcccCCCChHHHHhhcceeccccccc
Q 000984 1073 TVALVGESGSGKSTVVSLLQR-FYDPDAGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLF 1131 (1198)
Q Consensus 1073 kvaIVG~SGSGKSTL~~lL~R-~ydp~~G~I~IDG~dI~~i~l~~LR~~IsiV~Qdp~LF 1131 (1198)
.+.|+||+|+||||++++|.+ ++.|+.|.|.++|.++..... -+..+++++|++++.
T Consensus 38 ~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 95 (354)
T 1sxj_E 38 HLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASN--RKLELNVVSSPYHLE 95 (354)
T ss_dssp CEEEECSTTSSHHHHHHTHHHHHSCTTCCC--------------------CCEECSSEEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeeccccc--ccceeeeecccceEE
Confidence 499999999999999999999 899999999999998765433 278899999998763
|
| >3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A | Back alignment and structure |
|---|
Probab=97.45 E-value=0.00014 Score=84.68 Aligned_cols=39 Identities=28% Similarity=0.347 Sum_probs=33.6
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCee
Q 000984 411 SGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGIN 449 (1198)
Q Consensus 411 ~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~ 449 (1198)
++..++++|++||||||++..|.+.+.+..++|.+-+.|
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D 134 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAAD 134 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecC
Confidence 468999999999999999999999998887877765544
|
| >1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=97.44 E-value=3.4e-05 Score=80.99 Aligned_cols=44 Identities=18% Similarity=0.141 Sum_probs=38.2
Q ss_pred EeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCC
Q 000984 409 ISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKE 452 (1198)
Q Consensus 409 i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~ 452 (1198)
.++|++++|+|++||||||+++.|.+.+++.+|.|.+.+.|...
T Consensus 19 ~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d~~~ 62 (201)
T 1rz3_A 19 TAGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDDHI 62 (201)
T ss_dssp CSSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGC
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccCccc
Confidence 56789999999999999999999999998888988877655433
|
| >3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A* | Back alignment and structure |
|---|
Probab=97.43 E-value=1.4e-05 Score=85.20 Aligned_cols=70 Identities=21% Similarity=0.286 Sum_probs=52.4
Q ss_pred CCEEEEEcCCCCCHHHHHHHHhc---ccCCCCCeE--------EECCcccCCCC-hHHHHhhcceec------ccccccc
Q 000984 1071 GKTVALVGESGSGKSTVVSLLQR---FYDPDAGHI--------TLDGVEIQKLQ-LKWLRQQMGLVS------QEPVLFN 1132 (1198)
Q Consensus 1071 GekvaIVG~SGSGKSTL~~lL~R---~ydp~~G~I--------~IDG~dI~~i~-l~~LR~~IsiV~------Qdp~LF~ 1132 (1198)
.-.++|+|++||||||+++.|.+ +.-.+.|.+ .-.|+|+.+.. +..+.+++.+.+ |+.+|+.
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~lg~~~~d~g~~~r~~~~~~~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~v~l~g 88 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARALGARYLDTGAMYRIATLAVLRAGADLTDPAAIEKAAADAEIGVGSDPDVDAAFLAG 88 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHTCCEEECCCTTSCCEEETT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCCcHHHHHHHHHHHcCCCchhhHHHHHHHHhCCEEEeecCCCcEEEECC
Confidence 34899999999999999999984 444556666 34577776653 667777887777 6677887
Q ss_pred ccHHHHHh
Q 000984 1133 DTIRANIA 1140 (1198)
Q Consensus 1133 gTIreNI~ 1140 (1198)
..|.+||+
T Consensus 89 ~~v~~~ir 96 (233)
T 3r20_A 89 EDVSSEIR 96 (233)
T ss_dssp EECTTGGG
T ss_pred eehhhhhc
Confidence 78877775
|
| >1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A* | Back alignment and structure |
|---|
Probab=97.42 E-value=3.7e-05 Score=96.78 Aligned_cols=85 Identities=18% Similarity=0.228 Sum_probs=53.8
Q ss_pred ccEEEeeeeEECCCC----CCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCC-CCCeEEECCcccCCCChH
Q 000984 1041 GEIELHHVSFKYPSR----PDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDP-DAGHITLDGVEIQKLQLK 1115 (1198)
Q Consensus 1041 G~I~f~nVsf~Y~~~----~~~~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp-~~G~I~IDG~dI~~i~l~ 1115 (1198)
+.|++++. ++|=- .+..|++|+||+ ++|+.++|+||+||||||+++++.++.-+ +.| ..+..
T Consensus 576 ~~i~i~~~--rHP~le~~~~~~~vlndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl~~~~q~G------~~vpa---- 642 (800)
T 1wb9_A 576 PGIRITEG--RHPVVEQVLNEPFIANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIALMAYIG------SYVPA---- 642 (800)
T ss_dssp SCEEEEEE--CCTTHHHHCSSCCCCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHHHHHTTT------CCBSS----
T ss_pred CCEEEEec--cccEEEccCCCceeeeccccc-CCCcEEEEECCCCCChHHHHHHHHHHHHHHhcC------cccch----
Confidence 35777764 55520 134699999999 99999999999999999999999997532 233 12211
Q ss_pred HHHhhcceecccccccc-ccHHHHHhcC
Q 000984 1116 WLRQQMGLVSQEPVLFN-DTIRANIAYG 1142 (1198)
Q Consensus 1116 ~LR~~IsiV~Qdp~LF~-gTIreNI~~g 1142 (1198)
-+.++++++| +|. -++.+|+..+
T Consensus 643 -~~~~i~~~~~---i~~~~~~~d~l~~~ 666 (800)
T 1wb9_A 643 -QKVEIGPIDR---IFTRVGAADDLASG 666 (800)
T ss_dssp -SEEEECCCCE---EEEEEC--------
T ss_pred -hcccceeHHH---HHhhCCHHHHHHhh
Confidence 1356788877 454 3788898765
|
| >2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax} | Back alignment and structure |
|---|
Probab=97.41 E-value=2.6e-05 Score=82.08 Aligned_cols=69 Identities=17% Similarity=0.201 Sum_probs=47.9
Q ss_pred EeeCCCEEEEEcCCCCCHHHHHHHHhcccCC-CCCeE----------EECCcccCCCChHHHHhhcceeccccccccccH
Q 000984 1067 KIRAGKTVALVGESGSGKSTVVSLLQRFYDP-DAGHI----------TLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTI 1135 (1198)
Q Consensus 1067 ~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp-~~G~I----------~IDG~dI~~i~l~~LR~~IsiV~Qdp~LF~gTI 1135 (1198)
+..+|..++|+|+|||||||+++.|.+.++. ..+.| .+||.|..-++.+.+++.+ .|+.+++.+..
T Consensus 8 ~~~~~~~i~l~G~sGsGKsTl~~~L~~~~~~~~~~~~~~ttR~~~~~e~~g~~~~~~~~~~~~~~~---~~~~~~~~~~~ 84 (204)
T 2qor_A 8 HMARIPPLVVCGPSGVGKGTLIKKVLSEFPSRFRFSISCTTRNKREKETNGVDYYFVDKDDFERKL---KEGQFLEFDKY 84 (204)
T ss_dssp -CCCCCCEEEECCTTSCHHHHHHHHHHHCTTTEEECCEEECSCCCTTCCBTTTEEECCHHHHHHHH---HTTCEEEEEEE
T ss_pred ccccCCEEEEECCCCCCHHHHHHHHHHhCccceeeeeeecCCCCCCCCCCCcceeeCCHHHHHHHH---HcCCCEEeHHh
Confidence 4678999999999999999999999987742 11222 3578888778888877653 35555554443
Q ss_pred HHH
Q 000984 1136 RAN 1138 (1198)
Q Consensus 1136 reN 1138 (1198)
..|
T Consensus 85 ~~~ 87 (204)
T 2qor_A 85 ANN 87 (204)
T ss_dssp TTE
T ss_pred CCC
Confidence 333
|
| >2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.41 E-value=7.1e-05 Score=89.15 Aligned_cols=91 Identities=18% Similarity=0.178 Sum_probs=72.3
Q ss_pred EEEeeeeEECCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHhhcc
Q 000984 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMG 1122 (1198)
Q Consensus 1043 I~f~nVsf~Y~~~~~~~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~~i~l~~LR~~Is 1122 (1198)
.+++++...|. ++.+++++++++++| +.|+||+|+|||||+++|.+... .|.|.++|.++.+......++++.
T Consensus 41 ~~l~~lv~~l~---~~~~~~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~~~--~~~i~i~g~~~~~~~~g~~~~~v~ 113 (499)
T 2dhr_A 41 EELKEIVEFLK---NPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVGAARVR 113 (499)
T ss_dssp HHHHHHHHHHH---CGGGTTTTSCCCCSE--EEEECSSSSSHHHHHHHHHHHTT--CCEEEEEGGGGTSSCTTHHHHHHH
T ss_pred HHHHHHHHHhh---chhhhhhccCCCCce--EEEECCCCCCHHHHHHHHHHHhC--CCEEEEehhHHHHhhhhhHHHHHH
Confidence 34556655563 234899999999999 99999999999999999999875 789999999998877777788888
Q ss_pred eeccccc-ccc-ccHHHHHh
Q 000984 1123 LVSQEPV-LFN-DTIRANIA 1140 (1198)
Q Consensus 1123 iV~Qdp~-LF~-gTIreNI~ 1140 (1198)
.++|++. .+. -.+-|||+
T Consensus 114 ~lfq~a~~~~p~il~IDEId 133 (499)
T 2dhr_A 114 DLFETAKRHAPCIVFIDEID 133 (499)
T ss_dssp HHTTTSSSSSSCEEEEECGG
T ss_pred HHHHHHHhcCCCEEEEehHH
Confidence 8999874 232 34567774
|
| >2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A* | Back alignment and structure |
|---|
Probab=97.34 E-value=7e-05 Score=80.43 Aligned_cols=42 Identities=19% Similarity=0.286 Sum_probs=36.3
Q ss_pred eEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecC
Q 000984 406 SISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLK 451 (1198)
Q Consensus 406 ~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~ 451 (1198)
+.+.++|++++|+|++||||||++++|.|. .|+|.+.+.+..
T Consensus 14 ~~~~~~g~~i~i~G~~GsGKSTl~~~L~~~----~g~v~~~~~~~~ 55 (230)
T 2vp4_A 14 YAEGTQPFTVLIEGNIGSGKTTYLNHFEKY----KNDICLLTEPVE 55 (230)
T ss_dssp BTTTCCCEEEEEECSTTSCHHHHHHTTGGG----TTTEEEECCTHH
T ss_pred cCCCCCceEEEEECCCCCCHHHHHHHHHhc----cCCeEEEecCHH
Confidence 335578999999999999999999999998 788999887653
|
| >1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A* | Back alignment and structure |
|---|
Probab=97.32 E-value=5.1e-05 Score=79.40 Aligned_cols=58 Identities=22% Similarity=0.465 Sum_probs=40.8
Q ss_pred eEECCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhc----cc----CCCCCeEEECCccc
Q 000984 1049 SFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQR----FY----DPDAGHITLDGVEI 1109 (1198)
Q Consensus 1049 sf~Y~~~~~~~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R----~y----dp~~G~I~IDG~dI 1109 (1198)
+|+|++- .++|+++|++.+++ +|++||++|+|||||++.|.+ -| .++.+.+.+||.++
T Consensus 6 ~~~~~~~--~~~l~~~~~~~~~~-ki~lvG~~~vGKSsLi~~l~~~~~~~~~~t~~~~~~~~~~~~~~l 71 (198)
T 1f6b_A 6 DWIYSGF--SSVLQFLGLYKKTG-KLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMTF 71 (198)
T ss_dssp ---------CHHHHHHTCTTCCE-EEEEEEETTSSHHHHHHHHSCC------CCCCCSCEEEEETTEEE
T ss_pred HHHHHHH--HHHHHHhhccCCCc-EEEEECCCCCCHHHHHHHHhcCCCCccCCCCCceeEEEEECCEEE
Confidence 4677642 35899999998887 799999999999999999986 22 33567788888544
|
| >1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20 | Back alignment and structure |
|---|
Probab=97.32 E-value=0.00083 Score=77.94 Aligned_cols=29 Identities=24% Similarity=0.526 Sum_probs=25.8
Q ss_pred CCC--EEEEEcCCCCcHHHHHHHHhccCCCC
Q 000984 411 SGT--TAALVGQSGSGKSTVISLIERFYDPQ 439 (1198)
Q Consensus 411 ~g~--~~~ivG~~GsGKStl~~~l~g~~~~~ 439 (1198)
++. .+.|+||+|+|||||++.+.+.+.+.
T Consensus 41 ~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~ 71 (389)
T 1fnn_A 41 GHHYPRATLLGRPGTGKTVTLRKLWELYKDK 71 (389)
T ss_dssp TSSCCEEEEECCTTSSHHHHHHHHHHHHTTS
T ss_pred CCCCCeEEEECCCCCCHHHHHHHHHHHHhhh
Confidence 456 89999999999999999999988765
|
| >1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=97.31 E-value=0.0001 Score=84.99 Aligned_cols=42 Identities=19% Similarity=0.348 Sum_probs=38.3
Q ss_pred EeeCCCEEEEEcCCCCCHHHHHHHHhc------------ccCCCCCeEEECCcc
Q 000984 1067 KIRAGKTVALVGESGSGKSTVVSLLQR------------FYDPDAGHITLDGVE 1108 (1198)
Q Consensus 1067 ~I~~GekvaIVG~SGSGKSTL~~lL~R------------~ydp~~G~I~IDG~d 1108 (1198)
++++|.++||||++|+|||||+++|.+ ..+|+.|.|.++|..
T Consensus 16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r 69 (392)
T 1ni3_A 16 RPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDER 69 (392)
T ss_dssp SSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHH
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcc
Confidence 567899999999999999999999999 678999999998843
|
| >2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A* | Back alignment and structure |
|---|
Probab=97.31 E-value=6e-05 Score=78.81 Aligned_cols=37 Identities=38% Similarity=0.578 Sum_probs=31.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhccc-----CC------CCCeEEECCccc
Q 000984 1073 TVALVGESGSGKSTVVSLLQRFY-----DP------DAGHITLDGVEI 1109 (1198)
Q Consensus 1073 kvaIVG~SGSGKSTL~~lL~R~y-----dp------~~G~I~IDG~dI 1109 (1198)
+++|||++|||||||++.|.+.. .| ..|.|.+||.++
T Consensus 7 kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~ 54 (199)
T 2f9l_A 7 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTI 54 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEE
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEE
Confidence 79999999999999999999873 23 357899999765
|
| >3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A* | Back alignment and structure |
|---|
Probab=97.29 E-value=0.00013 Score=92.94 Aligned_cols=61 Identities=16% Similarity=0.110 Sum_probs=47.8
Q ss_pred ccEEEeeeeEECCCC--CCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHH--------hcccCCCCCe
Q 000984 1041 GEIELHHVSFKYPSR--PDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLL--------QRFYDPDAGH 1101 (1198)
Q Consensus 1041 G~I~f~nVsf~Y~~~--~~~~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL--------~R~ydp~~G~ 1101 (1198)
+.|++++...-+-.. .+..|++|++|++++|+.++|+||+||||||+++.+ .+.+-|.++.
T Consensus 630 ~~i~i~~~rHP~le~~~~~~~v~ndisl~~~~g~i~~ItGpNGsGKSTlLr~ial~~~~aq~G~~vpa~~~ 700 (934)
T 3thx_A 630 GRIILKASRHACVEVQDEIAFIPNDVYFEKDKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCESA 700 (934)
T ss_dssp CEEEEEEECCTTTTTC--CCCCCEEEEEETTTBCEEEEECCTTSSHHHHHHHHHHHHHHHHHTCCBSEEEE
T ss_pred cceEeecCccchhhhcCCceeecccceeecCCCeEEEEECCCCCCHHHHHHHHHHHHHHHhcCCccccccc
Confidence 468888764333221 134699999999999999999999999999999999 7777776543
|
| >3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A* | Back alignment and structure |
|---|
Probab=97.25 E-value=6.8e-05 Score=86.40 Aligned_cols=43 Identities=28% Similarity=0.398 Sum_probs=34.5
Q ss_pred cccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhc--ccCCCCCeEEE
Q 000984 1059 QVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQR--FYDPDAGHITL 1104 (1198)
Q Consensus 1059 ~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R--~ydp~~G~I~I 1104 (1198)
.+|++++++++ .|++||++|||||||++.|.+ |.++.+|.+.-
T Consensus 25 ~~l~~i~~~lp---~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~ 69 (360)
T 3t34_A 25 SALPTLWDSLP---AIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTR 69 (360)
T ss_dssp CCC----CCCC---EEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCC
T ss_pred cccccccccCC---EEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccC
Confidence 48999999999 999999999999999999999 77777776643
|
| >1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A* | Back alignment and structure |
|---|
Probab=97.24 E-value=0.0001 Score=75.31 Aligned_cols=38 Identities=34% Similarity=0.403 Sum_probs=33.1
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecC
Q 000984 410 SSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLK 451 (1198)
Q Consensus 410 ~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~ 451 (1198)
.+|++++|+|++||||||+++.|.+.+ |.+.+|+.++.
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~----g~~~i~~d~~~ 43 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQL----HAAFLDGDFLH 43 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH----TCEEEEGGGGC
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhh----CcEEEeCcccc
Confidence 468999999999999999999999875 88889886553
|
| >2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10 | Back alignment and structure |
|---|
Probab=97.24 E-value=5.6e-05 Score=86.31 Aligned_cols=53 Identities=15% Similarity=0.206 Sum_probs=46.9
Q ss_pred cccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCC
Q 000984 1059 QVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQK 1111 (1198)
Q Consensus 1059 ~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~~ 1111 (1198)
.+++++++++++|.+++|+|++|+||||+++.|.+.+.+.+|++.+-+.|...
T Consensus 44 ~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d~~~ 96 (341)
T 2p67_A 44 QLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSS 96 (341)
T ss_dssp HHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC-
T ss_pred HHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecCCc
Confidence 48999999999999999999999999999999999998888888877666643
|
| >2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A* | Back alignment and structure |
|---|
Probab=97.23 E-value=0.00012 Score=81.41 Aligned_cols=44 Identities=20% Similarity=0.323 Sum_probs=38.1
Q ss_pred eCCCEEEEEcCCCCCHHHHHHHHhcccCCCCC-eEEECCcccCCC
Q 000984 1069 RAGKTVALVGESGSGKSTVVSLLQRFYDPDAG-HITLDGVEIQKL 1112 (1198)
Q Consensus 1069 ~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G-~I~IDG~dI~~i 1112 (1198)
++|+.+++||++||||||++..|.+.+.+++| +|.+-+.|....
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~~r~ 147 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDTYRI 147 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCCSST
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCcccc
Confidence 47999999999999999999999999998788 777777776543
|
| >1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1 | Back alignment and structure |
|---|
Probab=97.23 E-value=0.00011 Score=86.86 Aligned_cols=69 Identities=22% Similarity=0.304 Sum_probs=43.7
Q ss_pred CEEEEEcCCCCCHHHHHHHHhccc------------CCCCCeEEECCcccCCCChHHHHhhcceeccccccccc-cHHHH
Q 000984 1072 KTVALVGESGSGKSTVVSLLQRFY------------DPDAGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFND-TIRAN 1138 (1198)
Q Consensus 1072 ekvaIVG~SGSGKSTL~~lL~R~y------------dp~~G~I~IDG~dI~~i~l~~LR~~IsiV~Qdp~LF~g-TIreN 1138 (1198)
-++||||++|+|||||++.|.+.. ++.+|.+.+||.++.-++..-+|+..++.+|+...|.. +..++
T Consensus 181 ~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~~~l~Dt~G~~~~~~~~~~~~e~~~~~~~~~~ 260 (439)
T 1mky_A 181 IKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYSNYRVVDS 260 (439)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEEEESSCSCC-----------CCSCCHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEEEEEEECCCCccccccchhhHHHHHHHHHHHH
Confidence 479999999999999999999874 37789999999987666666667777777777666642 23345
Q ss_pred Hh
Q 000984 1139 IA 1140 (1198)
Q Consensus 1139 I~ 1140 (1198)
++
T Consensus 261 i~ 262 (439)
T 1mky_A 261 IE 262 (439)
T ss_dssp HH
T ss_pred Hh
Confidence 44
|
| >3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A* | Back alignment and structure |
|---|
Probab=97.22 E-value=5.8e-05 Score=77.59 Aligned_cols=37 Identities=24% Similarity=0.383 Sum_probs=33.5
Q ss_pred eEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCe
Q 000984 1065 NLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGH 1101 (1198)
Q Consensus 1065 s~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~ 1101 (1198)
+|++++|+.++|+||+|+|||||++++.+.+.|.+|.
T Consensus 32 ~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~ 68 (180)
T 3ec2_A 32 NFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGI 68 (180)
T ss_dssp SCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCC
T ss_pred hccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCC
Confidence 5678899999999999999999999999999877773
|
| >2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A* | Back alignment and structure |
|---|
Probab=97.21 E-value=3.7e-05 Score=80.66 Aligned_cols=69 Identities=20% Similarity=0.391 Sum_probs=41.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhc------ccCCCCCeEEECCc--ccCCCCh--------HHHHhhcceeccccccccccHH
Q 000984 1073 TVALVGESGSGKSTVVSLLQR------FYDPDAGHITLDGV--EIQKLQL--------KWLRQQMGLVSQEPVLFNDTIR 1136 (1198)
Q Consensus 1073 kvaIVG~SGSGKSTL~~lL~R------~ydp~~G~I~IDG~--dI~~i~l--------~~LR~~IsiV~Qdp~LF~gTIr 1136 (1198)
.|+|+|++||||||++++|.+ +.+|..|...++.. |-...+. ..+++....+.|+.+++++++.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~vi~d~~~~ 81 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLGYEIFKEPVEENPYFEQYYKDLKKTVFKMQIYMLTARSKQLKQAKNLENIIFDRTLL 81 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHCCEEECCCGGGCTTHHHHTTCHHHHHHHHHHHHHHHHHHHHC------CEEEESCTT
T ss_pred EEEEECCCccCHHHHHHHHHHhcCCcEEcccccccHHHHHHHhCccccchhHHHHHHHHHHHHHHHhhccCCEEEEeccc
Confidence 689999999999999999998 45555454333321 1111110 1133444567788899999988
Q ss_pred HHHhc
Q 000984 1137 ANIAY 1141 (1198)
Q Consensus 1137 eNI~~ 1141 (1198)
+|+.|
T Consensus 82 ~~~~~ 86 (205)
T 2jaq_A 82 EDPIF 86 (205)
T ss_dssp THHHH
T ss_pred hhHHH
Confidence 87765
|
| >3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A | Back alignment and structure |
|---|
Probab=97.16 E-value=8.7e-05 Score=90.15 Aligned_cols=82 Identities=18% Similarity=0.238 Sum_probs=52.6
Q ss_pred EEEeeeeEECCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHhhcc
Q 000984 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMG 1122 (1198)
Q Consensus 1043 I~f~nVsf~Y~~~~~~~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~~i~l~~LR~~Is 1122 (1198)
+-.++|..+|. +..+++++++++ +|+.+.|+||+|+|||||+++|.+...+..|.|.++|..-..--....|+.++
T Consensus 84 ~G~~~vk~~i~---~~~~l~~~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~~~~~~~~~g~~~~~ig 159 (543)
T 3m6a_A 84 HGLEKVKERIL---EYLAVQKLTKSL-KGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGVRDESEIRGHRRTYVG 159 (543)
T ss_dssp SSCHHHHHHHH---HHHHHHHHSSSC-CSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC----------------
T ss_pred ccHHHHHHHHH---HHHHHHHhcccC-CCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEecccchhhhhhhHHHHHhc
Confidence 33566776673 235789999999 89999999999999999999999999999999999885432222233445667
Q ss_pred eecccc
Q 000984 1123 LVSQEP 1128 (1198)
Q Consensus 1123 iV~Qdp 1128 (1198)
.++|..
T Consensus 160 ~~~~~~ 165 (543)
T 3m6a_A 160 AMPGRI 165 (543)
T ss_dssp ----CH
T ss_pred cCchHH
Confidence 666654
|
| >1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=97.16 E-value=8.7e-05 Score=84.82 Aligned_cols=44 Identities=16% Similarity=0.268 Sum_probs=38.3
Q ss_pred CccccceeEEEeCCCE--EEEEcCCCCcHHHHHHHHhccCCCCCCe
Q 000984 399 EQIFSGFSISISSGTT--AALVGQSGSGKSTVISLIERFYDPQAGE 442 (1198)
Q Consensus 399 ~~~l~~i~l~i~~g~~--~~ivG~~GsGKStl~~~l~g~~~~~~G~ 442 (1198)
..+++.++..++.|+. +.+.||+|+||||+++++.+.+.+..+.
T Consensus 31 ~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~ 76 (340)
T 1sxj_C 31 NEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGKNYS 76 (340)
T ss_dssp HHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHTTSHH
T ss_pred HHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCCcc
Confidence 3588889999999998 9999999999999999999988665543
|
| >1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.15 E-value=7.2e-05 Score=78.37 Aligned_cols=81 Identities=27% Similarity=0.327 Sum_probs=50.3
Q ss_pred CEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccC-CCC-h--HHHHhhcceeccccccccccHHHHHhcCCCCCC
Q 000984 1072 KTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQ-KLQ-L--KWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDA 1147 (1198)
Q Consensus 1072 ekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~-~i~-l--~~LR~~IsiV~Qdp~LF~gTIreNI~~g~~~~~ 1147 (1198)
..|+|+|++||||||+.++|.+. |-..||.-++. +.. - ..+++.. |+.+. +|++ +|..++.. ..
T Consensus 9 ~~I~i~G~~GsGKST~~~~La~~-----g~~~id~d~~~~~~~~~~~~~i~~~~----~~~~~-~g~i-~~~~l~~~-~~ 76 (203)
T 1uf9_A 9 IIIGITGNIGSGKSTVAALLRSW-----GYPVLDLDALAARARENKEEELKRLF----PEAVV-GGRL-DRRALARL-VF 76 (203)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHT-----TCCEEEHHHHHHHHHHHTHHHHHHHC----GGGEE-TTEE-CHHHHHHH-HT
T ss_pred eEEEEECCCCCCHHHHHHHHHHC-----CCEEEcccHHHHHhcCChHHHHHHHH----HHHHh-CCCc-CHHHHHHH-Hh
Confidence 47999999999999999999985 77788765542 110 0 2333332 56555 7777 55544321 24
Q ss_pred CHHHHHHHHHHcchHHHH
Q 000984 1148 TEAEIQAASEMANAHKFI 1165 (1198)
Q Consensus 1148 tdeei~~Al~~A~l~dfI 1165 (1198)
++++.+..++ ...|.+|
T Consensus 77 ~~~~~~~~l~-~~~~~~i 93 (203)
T 1uf9_A 77 SDPERLKALE-AVVHPEV 93 (203)
T ss_dssp TSHHHHHHHH-HHHHHHH
T ss_pred CCHHHHHHHH-HHhChHH
Confidence 4556666665 2344444
|
| >1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A* | Back alignment and structure |
|---|
Probab=97.14 E-value=8.1e-05 Score=78.73 Aligned_cols=45 Identities=38% Similarity=0.421 Sum_probs=40.3
Q ss_pred EEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCC--eEEECCcccC
Q 000984 1066 LKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAG--HITLDGVEIQ 1110 (1198)
Q Consensus 1066 ~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G--~I~IDG~dI~ 1110 (1198)
+.+++|..+.|+|++||||||+++.|.+.+.|..| .+.+||-+++
T Consensus 20 ~~~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d~~r 66 (211)
T 1m7g_A 20 LRNQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNIR 66 (211)
T ss_dssp HHTSSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHHT
T ss_pred ccCCCCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECChHHh
Confidence 45788999999999999999999999999988889 8999986664
|
| >3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus} | Back alignment and structure |
|---|
Probab=97.13 E-value=0.00011 Score=90.72 Aligned_cols=65 Identities=15% Similarity=0.199 Sum_probs=56.1
Q ss_pred cccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCC-CeEEECCcccCCCChHHHHhhcceecccc
Q 000984 1059 QVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDA-GHITLDGVEIQKLQLKWLRQQMGLVSQEP 1128 (1198)
Q Consensus 1059 ~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~-G~I~IDG~dI~~i~l~~LR~~IsiV~Qdp 1128 (1198)
.+++++++.+++|+.+.|+||+|+|||||+++|.++..+.. |.+.+++.+..... ..++++||..
T Consensus 48 ~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~~~~~~~~-----p~i~~~p~g~ 113 (604)
T 3k1j_A 48 HAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPNPEDENM-----PRIKTVPACQ 113 (604)
T ss_dssp HHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEECCTTCTTS-----CEEEEEETTH
T ss_pred hhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeCCcccccC-----CcEEEEecch
Confidence 58999999999999999999999999999999999999887 88999988776543 3467776654
|
| >4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=97.13 E-value=0.00012 Score=88.72 Aligned_cols=72 Identities=26% Similarity=0.392 Sum_probs=55.7
Q ss_pred ccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcc----------------------c-C---------------CCCCe
Q 000984 1060 VFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRF----------------------Y-D---------------PDAGH 1101 (1198)
Q Consensus 1060 vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~----------------------y-d---------------p~~G~ 1101 (1198)
.+++++|++.+| ..+|+|++|||||||+.+|.-+ + + ..++.
T Consensus 50 ~~~~~~l~f~~g-~n~i~G~NGaGKS~lleAl~~llg~r~~~~~i~~g~~~a~v~~~f~~~~~~~~~~i~r~~~~~g~~~ 128 (517)
T 4ad8_A 50 TITQLELELGGG-FCAFTGETGAGKSIIVDALGLLLGGRANHDLIRSGEKELLVTGFWGDGDESEADSASRRLSSAGRGA 128 (517)
T ss_dssp TBSCEEEECCCS-EEEEEESHHHHHHHHTHHHHHHTCSCCCGGGBCTTCSEEEEEEEC--------CEEEEEEETTSCCE
T ss_pred ceeeEEEecCCC-eEEEEcCCCCCHHHHHHHHHHHhcCCcHHHHhcCCCCcEEEEEEEEecCCCCeEEEEEEEecCCCcE
Confidence 578899999999 9999999999999999999444 4 2 23678
Q ss_pred EEECCcccCCCChHHHHhh-cceecccccccc
Q 000984 1102 ITLDGVEIQKLQLKWLRQQ-MGLVSQEPVLFN 1132 (1198)
Q Consensus 1102 I~IDG~dI~~i~l~~LR~~-IsiV~Qdp~LF~ 1132 (1198)
++|||.+++.-.+.++-.. +.+++|+-.++.
T Consensus 129 ~~ing~~v~~~~l~~~~~~li~i~~q~~~~~l 160 (517)
T 4ad8_A 129 ARLSGEVVSVRELQEWAQGRLTIHWQHSAVSL 160 (517)
T ss_dssp EESSSSBCCHHHHHHHHTTTEEEESGGGGGTT
T ss_pred EEECCEECCHHHHHHHhhhheEEeCCchHHhc
Confidence 9999998865445555444 688899875543
|
| >2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.11 E-value=0.00015 Score=82.96 Aligned_cols=44 Identities=20% Similarity=0.327 Sum_probs=37.6
Q ss_pred eCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCC
Q 000984 1069 RAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKL 1112 (1198)
Q Consensus 1069 ~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~~i 1112 (1198)
+++.+|||+|++|||||||++.|.+...+.+|+|.|.+.|....
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~~dp~~~ 115 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAVDPSSC 115 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC---
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEeecCCCC
Confidence 45789999999999999999999999999999999988876543
|
| >4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A | Back alignment and structure |
|---|
Probab=97.08 E-value=0.00027 Score=75.61 Aligned_cols=44 Identities=20% Similarity=0.276 Sum_probs=32.5
Q ss_pred cccceEEee---CCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEEC
Q 000984 1061 FRDLNLKIR---AGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLD 1105 (1198)
Q Consensus 1061 L~~is~~I~---~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~ID 1105 (1198)
|.++|++++ +|..++|.|++||||||+++.|...+.+ .+.+...
T Consensus 13 ~~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~~-~~~~~~~ 59 (229)
T 4eaq_A 13 LGTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRLVK-DYDVIMT 59 (229)
T ss_dssp -------CCCCCCCEEEEEECCTTSCHHHHHHHHHHHHTT-TSCEEEE
T ss_pred ccCCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHHHhc-CCCceee
Confidence 555566555 8999999999999999999999999987 6777543
|
| >3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1} | Back alignment and structure |
|---|
Probab=97.05 E-value=0.00042 Score=78.07 Aligned_cols=107 Identities=10% Similarity=0.125 Sum_probs=65.2
Q ss_pred ccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcceEEEcCCCCCCcccHHHH
Q 000984 400 QIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDN 479 (1198)
Q Consensus 400 ~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~N 479 (1198)
+.|+++.--+++|+++.|.|++|+|||||+.-++...-. .| ..+.|++=+
T Consensus 56 ~~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~~a~-~g------------------~~vl~~slE----------- 105 (315)
T 3bh0_A 56 TELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSD-ND------------------DVVNLHSLE----------- 105 (315)
T ss_dssp HHHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHHHHT-TT------------------CEEEEEESS-----------
T ss_pred HHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH-cC------------------CeEEEEECC-----------
Confidence 457776656899999999999999999999887753211 11 134444322
Q ss_pred HhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccc-hhcCCCCCCChHHHHHHhHHHhhccCCCEEEEeCCCCC
Q 000984 480 IAYGKDDATTEEIRVATELANAAKFIDKLPQGIDT-LVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSA 552 (1198)
Q Consensus 480 i~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t-~v~~~g~~lSgGqkqri~lARal~~~~~illlDe~ts~ 552 (1198)
.+.+++..-+... .. |.+. .+-.+-..||++++||+.-|...+.++++++.|+|...
T Consensus 106 -------~s~~~l~~R~~~~-----~~----~i~~~~l~~~~~~l~~~~~~~l~~a~~~l~~~~i~i~d~~~~~ 163 (315)
T 3bh0_A 106 -------MGKKENIKRLIVT-----AG----SINAQKIKAARRDFASEDWGKLSMAIGEISNSNINIFDKAGQS 163 (315)
T ss_dssp -------SCHHHHHHHHHHH-----HT----TCCHHHHHSCHHHHCSSCHHHHHHHHHHHHTSCEEEECCSCCB
T ss_pred -------CCHHHHHHHHHHH-----Hc----CCCHHHHhcCCCCCCHHHHHHHHHHHHHHhCCCEEEECCCCCC
Confidence 2233332211110 00 1110 01010012889999999999988889999999988644
|
| >2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A* | Back alignment and structure |
|---|
Probab=97.05 E-value=6.9e-05 Score=76.94 Aligned_cols=39 Identities=38% Similarity=0.476 Sum_probs=32.1
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHhccCCCCCC--eEEECCee
Q 000984 410 SSGTTAALVGQSGSGKSTVISLIERFYDPQAG--EVLIDGIN 449 (1198)
Q Consensus 410 ~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G--~i~i~g~~ 449 (1198)
++|++++|+|++||||||+++.|.+.+.+ .| .+.+||..
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~-~g~~~i~~d~~~ 43 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLVC-HGIPCYTLDGDN 43 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHH-TTCCEEEEEHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhh-CCCcEEEECChH
Confidence 47899999999999999999999998766 56 56666643
|
| >1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B* | Back alignment and structure |
|---|
Probab=97.04 E-value=0.00027 Score=73.16 Aligned_cols=49 Identities=20% Similarity=0.484 Sum_probs=29.9
Q ss_pred ccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhc----ccC----CCCCeEEECCccc
Q 000984 1060 VFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQR----FYD----PDAGHITLDGVEI 1109 (1198)
Q Consensus 1060 vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R----~yd----p~~G~I~IDG~dI 1109 (1198)
+|+++++..++. +|++||++|+|||||++.|.+ -|. +..+.+.++|..+
T Consensus 13 ~l~~~~~~~~~~-ki~~vG~~~vGKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~ 69 (190)
T 1m2o_B 13 VLASLGLWNKHG-KLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSEELAIGNIKF 69 (190)
T ss_dssp -----------C-EEEEEESTTSSHHHHHHHHHHSCCCCCCCCCSCEEEEEEETTEEE
T ss_pred HHHHhhccCCcc-EEEEECCCCCCHHHHHHHHhcCCCCccccCCCCCeEEEEECCEEE
Confidence 789999998887 899999999999999999987 233 3456777887544
|
| >3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B* | Back alignment and structure |
|---|
Probab=96.99 E-value=0.00019 Score=91.15 Aligned_cols=51 Identities=18% Similarity=0.275 Sum_probs=41.3
Q ss_pred ccEEEeeeeEECC------CCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhc
Q 000984 1041 GEIELHHVSFKYP------SRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQR 1093 (1198)
Q Consensus 1041 G~I~f~nVsf~Y~------~~~~~~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R 1093 (1198)
+.|++++. ++| ...+..|++|+||++++|+.++|+||+||||||+++.+..
T Consensus 639 ~~i~i~~~--rHP~le~~~~~~~~~V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~ 695 (918)
T 3thx_B 639 RKIVIKNG--RHPVIDVLLGEQDQYVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVAL 695 (918)
T ss_dssp CEEEEEEE--CCHHHHHHTCSCSSSCCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHH
T ss_pred CcEEEEec--cchhhhhhhccCCceecccccccCCCCeEEEEECCCCCchHHHHHHHHH
Confidence 35777763 454 1123579999999999999999999999999999998864
|
| >3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=96.97 E-value=0.0021 Score=71.57 Aligned_cols=31 Identities=32% Similarity=0.413 Sum_probs=25.8
Q ss_pred hHHHHHHhHHHhhccCCCEEEEeCCCCCCCH
Q 000984 525 GGQKQRIAIARAILKDPRILLLDEATSALDA 555 (1198)
Q Consensus 525 gGqkqri~lARal~~~~~illlDe~ts~lD~ 555 (1198)
++++.|-.+++|...+|.++++||+.+-.+.
T Consensus 98 ~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~ 128 (297)
T 3b9p_A 98 GEKLVRALFAVARHMQPSIIFIDEVDSLLSE 128 (297)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEEETGGGTSBC
T ss_pred HHHHHHHHHHHHHHcCCcEEEeccHHHhccc
Confidence 5777777888888889999999999887664
|
| >2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A | Back alignment and structure |
|---|
Probab=96.97 E-value=0.00034 Score=71.14 Aligned_cols=41 Identities=27% Similarity=0.453 Sum_probs=31.2
Q ss_pred eCCCEEEEEcCCCCCHHHHHHHHhcccCC------------CCCeEEECCccc
Q 000984 1069 RAGKTVALVGESGSGKSTVVSLLQRFYDP------------DAGHITLDGVEI 1109 (1198)
Q Consensus 1069 ~~GekvaIVG~SGSGKSTL~~lL~R~ydp------------~~G~I~IDG~dI 1109 (1198)
++|.+|+|||++|+|||||++.|.+...+ ..+.+.+||.++
T Consensus 2 ~~~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~ 54 (172)
T 2gj8_A 2 SHGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPL 54 (172)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETTEEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEECCeEE
Confidence 47899999999999999999999985321 236778888543
|
| >1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2 | Back alignment and structure |
|---|
Probab=96.96 E-value=0.00031 Score=71.45 Aligned_cols=35 Identities=29% Similarity=0.351 Sum_probs=29.5
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcc
Q 000984 1070 AGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVE 1108 (1198)
Q Consensus 1070 ~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~d 1108 (1198)
.|+.++|+|++||||||++++|.+.+.+ +.+|+-+
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l~~----~~id~d~ 37 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQLNM----EFYDSDQ 37 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHTTC----EEEEHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhCC----CEEeccH
Confidence 4788999999999999999999998754 6777543
|
| >3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.96 E-value=0.0039 Score=66.98 Aligned_cols=28 Identities=32% Similarity=0.332 Sum_probs=24.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhccCCCCCC
Q 000984 414 TAALVGQSGSGKSTVISLIERFYDPQAG 441 (1198)
Q Consensus 414 ~~~ivG~~GsGKStl~~~l~g~~~~~~G 441 (1198)
+++|+|++|+|||||++.|+|...+.+|
T Consensus 31 ~i~lvG~~g~GKStlin~l~g~~~~~~~ 58 (239)
T 3lxx_A 31 RIVLVGKTGAGKSATGNSILGRKVFHSG 58 (239)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSCCSCC-
T ss_pred EEEEECCCCCCHHHHHHHHcCCCcCccC
Confidence 6899999999999999999997665554
|
| >1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A | Back alignment and structure |
|---|
Probab=96.90 E-value=0.0018 Score=73.73 Aligned_cols=28 Identities=18% Similarity=0.171 Sum_probs=25.8
Q ss_pred EEeCCCEEEEEcCCCCcHHHHHHHHhcc
Q 000984 408 SISSGTTAALVGQSGSGKSTVISLIERF 435 (1198)
Q Consensus 408 ~i~~g~~~~ivG~~GsGKStl~~~l~g~ 435 (1198)
-+++|+++.|.||+|||||||+..++..
T Consensus 118 Gl~~G~i~~I~G~~GsGKTtla~~la~~ 145 (343)
T 1v5w_A 118 GIESMAITEAFGEFRTGKTQLSHTLCVT 145 (343)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999999988875
|
| >2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A | Back alignment and structure |
|---|
Probab=96.89 E-value=0.00038 Score=80.93 Aligned_cols=64 Identities=23% Similarity=0.212 Sum_probs=54.2
Q ss_pred EEEeeeeEECCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCC
Q 000984 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQ 1113 (1198)
Q Consensus 1043 I~f~nVsf~Y~~~~~~~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~~i~ 1113 (1198)
+..++++..|... . ++++|+ +|+.++++|++||||||++..|.+.+.+..|+|.+.+.|+..-.
T Consensus 77 ~v~~~L~~~~~~~---~--~~i~l~--~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~r~a 140 (425)
T 2ffh_A 77 TVYEALKEALGGE---A--RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPA 140 (425)
T ss_dssp HHHHHHHHHTTSS---C--CCCCCC--SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSSCHH
T ss_pred HHHHHHHHHhCCC---c--ccccCC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeeccccCch
Confidence 5566778888532 1 678888 89999999999999999999999999999999999998886643
|
| >2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10 | Back alignment and structure |
|---|
Probab=96.88 E-value=0.00016 Score=82.58 Aligned_cols=48 Identities=17% Similarity=0.212 Sum_probs=42.4
Q ss_pred ccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECC
Q 000984 400 QIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDG 447 (1198)
Q Consensus 400 ~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g 447 (1198)
.+++++++.+++|..++|+|++|+|||||++.|++.+.+.+|++.+-+
T Consensus 44 ~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~ 91 (341)
T 2p67_A 44 QLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIA 91 (341)
T ss_dssp HHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred HHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEe
Confidence 478899999999999999999999999999999999888777766543
|
| >1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=96.86 E-value=0.00052 Score=80.99 Aligned_cols=50 Identities=20% Similarity=0.373 Sum_probs=39.1
Q ss_pred cEEEeeeeEECCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCC
Q 000984 1042 EIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAG 1100 (1198)
Q Consensus 1042 ~I~f~nVsf~Y~~~~~~~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G 1100 (1198)
.|+++|+ .+|.+ . . .+++.+|+.++|+||+|||||||+.+|.++..+.++
T Consensus 6 ~l~~~~~-~~~~~---~---~--~~~~~~~~~~~i~G~nG~GKstll~ai~~~~~~~~~ 55 (430)
T 1w1w_A 6 GLELSNF-KSYRG---V---T--KVGFGESNFTSIIGPNGSGKSNMMDAISFVLGVRSN 55 (430)
T ss_dssp EEEEESC-SSCCS---E---E--EEECTTCSEEEEECSTTSSHHHHHHHHHHHTTC---
T ss_pred EEEEeCE-EEECC---c---e--eEEecCCCEEEEECCCCCCHHHHHHHHHhhhccccc
Confidence 4889999 68842 1 1 255778999999999999999999999999888653
|
| >2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=96.85 E-value=0.00067 Score=77.33 Aligned_cols=33 Identities=21% Similarity=0.369 Sum_probs=31.2
Q ss_pred ccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhc
Q 000984 1060 VFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQR 1093 (1198)
Q Consensus 1060 vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R 1093 (1198)
.+++++|++++| .++|+||+|||||||+.+|..
T Consensus 16 ~~~~~~~~~~~g-~~~i~G~nG~GKttll~ai~~ 48 (359)
T 2o5v_A 16 NLAPGTLNFPEG-VTGIYGENGAGKTNLLEAAYL 48 (359)
T ss_dssp TCCSEEEECCSE-EEEEECCTTSSHHHHHHHHHH
T ss_pred ceeeeEEEEcCC-eEEEECCCCCChhHHHHHHHH
Confidence 579999999999 999999999999999999985
|
| >2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A* | Back alignment and structure |
|---|
Probab=96.85 E-value=0.0013 Score=77.54 Aligned_cols=42 Identities=17% Similarity=0.287 Sum_probs=31.8
Q ss_pred CCCEEEEeCCCCCCCH-HhHHHHHHHHHHHh-CCCeEEEEecCc
Q 000984 540 DPRILLLDEATSALDA-ESEKVVQEALDRIM-VNRTTVIVAHRL 581 (1198)
Q Consensus 540 ~~~illlDe~ts~lD~-~~~~~i~~~i~~~~-~~~t~i~itH~~ 581 (1198)
++++|++||+..-.+. .+...+...+.... .++.+|++||+.
T Consensus 194 ~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~ 237 (440)
T 2z4s_A 194 KVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDRE 237 (440)
T ss_dssp TCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSC
T ss_pred CCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCC
Confidence 8999999999887764 45666777776654 457888888874
|
| >1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1 | Back alignment and structure |
|---|
Probab=96.84 E-value=0.00048 Score=81.47 Aligned_cols=57 Identities=28% Similarity=0.329 Sum_probs=36.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhccCC------------CCCCeEEECCeecCCcCHHHHhcceEEEcCCCC
Q 000984 414 TAALVGQSGSGKSTVISLIERFYD------------PQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPV 470 (1198)
Q Consensus 414 ~~~ivG~~GsGKStl~~~l~g~~~------------~~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~ 470 (1198)
+++|+|++|+|||||++.|+|... +..|.+.++|.++.-++...+++..++.+|...
T Consensus 182 kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~~~l~Dt~G~~~~~~~~~~~~e 250 (439)
T 1mky_A 182 KVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVE 250 (439)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEEEESSCSCC-----------C
T ss_pred eEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEEEEEEECCCCccccccchhhHH
Confidence 799999999999999999999853 677899999986654454444444444445443
|
| >1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=96.83 E-value=0.0038 Score=67.90 Aligned_cols=42 Identities=26% Similarity=0.370 Sum_probs=27.9
Q ss_pred ccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECC
Q 000984 402 FSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDG 447 (1198)
Q Consensus 402 l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g 447 (1198)
++++++.+++| +.|+||+|+|||||+++|.+.+... -+.+++
T Consensus 37 ~~~~~~~~~~~--vll~G~~GtGKT~la~~la~~~~~~--~~~i~~ 78 (257)
T 1lv7_A 37 FQKLGGKIPKG--VLMVGPPGTGKTLLAKAIAGEAKVP--FFTISG 78 (257)
T ss_dssp C-----CCCCE--EEEECCTTSCHHHHHHHHHHHHTCC--EEEECS
T ss_pred HHHcCCCCCCe--EEEECcCCCCHHHHHHHHHHHcCCC--EEEEeH
Confidence 44444444544 8999999999999999999986421 355554
|
| >1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X | Back alignment and structure |
|---|
Probab=96.81 E-value=0.00048 Score=77.01 Aligned_cols=25 Identities=28% Similarity=0.306 Sum_probs=22.5
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhcc
Q 000984 411 SGTTAALVGQSGSGKSTVISLIERF 435 (1198)
Q Consensus 411 ~g~~~~ivG~~GsGKStl~~~l~g~ 435 (1198)
++.+++|+|++|+|||||++.|+|.
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~ 31 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQ 31 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCC
Confidence 3448999999999999999999986
|
| >2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=96.81 E-value=0.00021 Score=77.26 Aligned_cols=68 Identities=19% Similarity=0.136 Sum_probs=45.4
Q ss_pred ccccc-eEEeeCCCEEEEEcCCCCCHHHHHH-HHhcccCCCCCeEEECCcccCCCChHHHHhhcceecccc
Q 000984 1060 VFRDL-NLKIRAGKTVALVGESGSGKSTVVS-LLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMGLVSQEP 1128 (1198)
Q Consensus 1060 vL~~i-s~~I~~GekvaIVG~SGSGKSTL~~-lL~R~ydp~~G~I~IDG~dI~~i~l~~LR~~IsiV~Qdp 1128 (1198)
.|+++ .--+++|+.++|+|++||||||++. ++....+...+.+++++.+- .-.+....+++++.+|+.
T Consensus 11 ~LD~~l~gGl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e~~-~~~~~~~~~~~g~~~~~~ 80 (247)
T 2dr3_A 11 GVDEILHGGIPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALEEH-PVQVRQNMAQFGWDVKPY 80 (247)
T ss_dssp THHHHTTTSEETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESSSC-HHHHHHHHHTTTCCCHHH
T ss_pred hHHHHcCCCCCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccCC-HHHHHHHHHHcCCCHHHH
Confidence 56666 5679999999999999999999954 55555555555666665432 112222234577877754
|
| >2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=96.78 E-value=0.00044 Score=80.03 Aligned_cols=31 Identities=16% Similarity=0.315 Sum_probs=26.8
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHhccCCCCC
Q 000984 410 SSGTTAALVGQSGSGKSTVISLIERFYDPQA 440 (1198)
Q Consensus 410 ~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~ 440 (1198)
.++..+.|+||+|+|||||++.+.+.+.+..
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~ 73 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSKLHKKF 73 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHHHHHHT
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHHHh
Confidence 4578999999999999999999999876543
|
| >3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.77 E-value=0.0012 Score=70.82 Aligned_cols=128 Identities=16% Similarity=0.173 Sum_probs=68.0
Q ss_pred EeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcceEEEcCCCCCC-cccHHHHHhcCCCCC
Q 000984 409 ISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLF-TGSIKDNIAYGKDDA 487 (1198)
Q Consensus 409 i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~-~~ti~~Ni~~~~~~~ 487 (1198)
+..|+.++++|||||||||++..++.......|. ...+.++.|.|... ..++.+|+.......
T Consensus 73 i~~g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~----------------~~~~~~l~~~p~~~la~q~~~~~~~~~~~~ 136 (235)
T 3llm_A 73 ISQNSVVIIRGATGCGKTTQVPQFILDDFIQNDR----------------AAECNIVVTQPRRISAVSVAERVAFERGEE 136 (235)
T ss_dssp HHHCSEEEEECCTTSSHHHHHHHHHHHHHHHTTC----------------GGGCEEEEEESSHHHHHHHHHHHHHTTTCC
T ss_pred HhcCCEEEEEeCCCCCcHHhHHHHHhcchhhcCC----------------CCceEEEEeccchHHHHHHHHHHHHHhccc
Confidence 3568999999999999999887665332111121 12466777777543 345666664221100
Q ss_pred CHHHHHHHHHHhcHHHHHHhCCCCccchhcC----CCCC---CChHHHHHHhHHHhhccCCCEEEEeCCCC-CCCHHhHH
Q 000984 488 TTEEIRVATELANAAKFIDKLPQGIDTLVGE----HGTQ---LSGGQKQRIAIARAILKDPRILLLDEATS-ALDAESEK 559 (1198)
Q Consensus 488 ~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~----~g~~---lSgGqkqri~lARal~~~~~illlDe~ts-~lD~~~~~ 559 (1198)
- + ...|+...... .... -+.|+-.+.. +.-+++-+++|+||+-. ++|.....
T Consensus 137 ~-----------~-------~~~g~~~~~~~~~~~~~~~Ivv~Tpg~l~~~l--~~~l~~~~~lVlDEah~~~~~~~~~~ 196 (235)
T 3llm_A 137 P-----------G-------KSCGYSVRFESILPRPHASIMFCTVGVLLRKL--EAGIRGISHVIVDEIHERDINTDFLL 196 (235)
T ss_dssp T-----------T-------SSEEEEETTEEECCCSSSEEEEEEHHHHHHHH--HHCCTTCCEEEECCTTSCCHHHHHHH
T ss_pred c-----------C-------ceEEEeechhhccCCCCCeEEEECHHHHHHHH--HhhhcCCcEEEEECCccCCcchHHHH
Confidence 0 0 00021111111 1111 2456655553 34689999999999976 46665443
Q ss_pred HHHHHHHHHhCCC
Q 000984 560 VVQEALDRIMVNR 572 (1198)
Q Consensus 560 ~i~~~i~~~~~~~ 572 (1198)
...+.+.....+.
T Consensus 197 ~~l~~i~~~~~~~ 209 (235)
T 3llm_A 197 VVLRDVVQAYPEV 209 (235)
T ss_dssp HHHHHHHHHCTTS
T ss_pred HHHHHHHhhCCCC
Confidence 3333343333343
|
| >4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A | Back alignment and structure |
|---|
Probab=96.76 E-value=0.00048 Score=73.71 Aligned_cols=43 Identities=21% Similarity=0.264 Sum_probs=31.3
Q ss_pred ccceeEEEe---CCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEE
Q 000984 402 FSGFSISIS---SGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLI 445 (1198)
Q Consensus 402 l~~i~l~i~---~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i 445 (1198)
|.++|+++. +|.+++|.|++||||||+++.|...+.+ .+.+..
T Consensus 13 ~~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~~-~~~~~~ 58 (229)
T 4eaq_A 13 LGTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRLVK-DYDVIM 58 (229)
T ss_dssp -------CCCCCCCEEEEEECCTTSCHHHHHHHHHHHHTT-TSCEEE
T ss_pred ccCCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHHHhc-CCCcee
Confidence 556666665 8999999999999999999999999887 666543
|
| >3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=96.76 E-value=0.0005 Score=78.11 Aligned_cols=69 Identities=16% Similarity=0.171 Sum_probs=53.2
Q ss_pred EeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeE-EECCcccCCCChHHHHhhcceecccccccc-ccHHHH
Q 000984 1067 KIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHI-TLDGVEIQKLQLKWLRQQMGLVSQEPVLFN-DTIRAN 1138 (1198)
Q Consensus 1067 ~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I-~IDG~dI~~i~l~~LR~~IsiV~Qdp~LF~-gTIreN 1138 (1198)
=+++|+.+.|.||+|||||||+..+.+...+..|.+ +||+.+..+ ....+++++.+|+..+.. .++.+.
T Consensus 57 Gi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~~---~~ra~rlgv~~~~l~i~~~~~~e~~ 127 (356)
T 3hr8_A 57 GYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHALD---PVYAKNLGVDLKSLLISQPDHGEQA 127 (356)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCC---HHHHHHHTCCGGGCEEECCSSHHHH
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecccccc---hHHHHHcCCchhhhhhhhccCHHHH
Confidence 489999999999999999999999999888777764 788765432 235678899988876543 344444
|
| >2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.74 E-value=0.0004 Score=79.39 Aligned_cols=40 Identities=20% Similarity=0.343 Sum_probs=34.8
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeec
Q 000984 411 SGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINL 450 (1198)
Q Consensus 411 ~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~ 450 (1198)
++..++|+|++|||||||++.|.|.+.+.+|+|.+.+.|.
T Consensus 73 ~~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~~dp 112 (349)
T 2www_A 73 LAFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAVDP 112 (349)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEeecC
Confidence 5779999999999999999999999988888887766544
|
| >1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A* | Back alignment and structure |
|---|
Probab=96.73 E-value=0.00039 Score=72.52 Aligned_cols=42 Identities=14% Similarity=0.390 Sum_probs=31.5
Q ss_pred EEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhc
Q 000984 390 YFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIER 434 (1198)
Q Consensus 390 ~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g 434 (1198)
+++|++ ..++++++|+..+++ +++++|++|+|||||++.+.+
T Consensus 6 ~~~~~~--~~~~l~~~~~~~~~~-ki~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 6 DWIYSG--FSSVLQFLGLYKKTG-KLVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp ---------CHHHHHHTCTTCCE-EEEEEEETTSSHHHHHHHHSC
T ss_pred HHHHHH--HHHHHHHhhccCCCc-EEEEECCCCCCHHHHHHHHhc
Confidence 455654 246899999988877 689999999999999999986
|
| >1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2 | Back alignment and structure |
|---|
Probab=96.72 E-value=0.00064 Score=69.06 Aligned_cols=33 Identities=27% Similarity=0.342 Sum_probs=27.7
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECC
Q 000984 411 SGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDG 447 (1198)
Q Consensus 411 ~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g 447 (1198)
.|+.++|+|++||||||+++.|.+.+.+ +.+|+
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l~~----~~id~ 35 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQLNM----EFYDS 35 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHTTC----EEEEH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhCC----CEEec
Confidence 4789999999999999999999998743 55554
|
| >2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.71 E-value=0.00022 Score=81.91 Aligned_cols=55 Identities=24% Similarity=0.259 Sum_probs=36.7
Q ss_pred CcccEEEeeeeEECCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeE
Q 000984 1039 VKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHI 1102 (1198)
Q Consensus 1039 ~~G~I~f~nVsf~Y~~~~~~~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I 1102 (1198)
..|.|.|+|++..|.. ..++++++|+| +|||++|+|||||++.|++.-.+..|.+
T Consensus 14 ~~~~v~~~~l~~~~~~---k~~~~~~~~~I------~vvG~~g~GKSTLln~L~~~~~~~~~~~ 68 (361)
T 2qag_A 14 TPGYVGFANLPNQVHR---KSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPERVI 68 (361)
T ss_dssp -------CCHHHHHHT---HHHHHCCEECE------EECCCTTSCHHHHHHHHTTCCC------
T ss_pred CCceEEeccchHHhCC---eeecCCCCEEE------EEEcCCCCCHHHHHHHHhCCCCCCCCcc
Confidence 3578999999998852 35899999987 9999999999999999988655444443
|
| >1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F | Back alignment and structure |
|---|
Probab=96.71 E-value=0.00041 Score=77.21 Aligned_cols=64 Identities=22% Similarity=0.278 Sum_probs=52.5
Q ss_pred EEEeeeeEECCCCCCcccccc-ceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCC
Q 000984 1043 IELHHVSFKYPSRPDVQVFRD-LNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKL 1112 (1198)
Q Consensus 1043 I~f~nVsf~Y~~~~~~~vL~~-is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~~i 1112 (1198)
+..+++...|... -++ ++|+.+ |+.++++|++|+||||++..|.+.+.+..|++.+.+.|+..-
T Consensus 75 ~~~~~l~~~~~~~-----~~~~i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r~ 139 (297)
T 1j8m_F 75 IVYDELSNLFGGD-----KEPKVIPDKI-PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYRP 139 (297)
T ss_dssp HHHHHHHHHTTCS-----CCCCCSCSSS-SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSSS
T ss_pred HHHHHHHHHhccc-----cccccccCCC-CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCH
Confidence 4456677777532 156 888877 999999999999999999999999998889999988887654
|
| >1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A | Back alignment and structure |
|---|
Probab=96.70 E-value=0.00062 Score=69.94 Aligned_cols=74 Identities=26% Similarity=0.447 Sum_probs=54.5
Q ss_pred EEEEcCCCCCHHHHHHHHhcccC-------------CCCCeEEECCcccCCCChHHHHhhcceeccccccccccHHHHHh
Q 000984 1074 VALVGESGSGKSTVVSLLQRFYD-------------PDAGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIA 1140 (1198)
Q Consensus 1074 vaIVG~SGSGKSTL~~lL~R~yd-------------p~~G~I~IDG~dI~~i~l~~LR~~IsiV~Qdp~LF~gTIreNI~ 1140 (1198)
|.|+||||||||||++.|+.-++ |-.|+ +||+|--=++.+...+.+. ++-+|-.+.+..|.
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~~~~~~~~svs~TTR~pR~gE--~~G~dY~Fvs~~eF~~~i~---~g~flE~~~~~g~~- 77 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGE--VNGKDYNFVSVDEFKSMIK---NNEFIEWAQFSGNY- 77 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHCTTTEEECCCEECSCCCTTC--CBTTTBEECCHHHHHHHHH---TTCEEEEEEETTEE-
T ss_pred EEEECCCCCCHHHHHHHHHHhCCCCeEEEEEEeccCCCCCC--cCCceeEeecHHHHHHHHH---cCCEEEEEEEcCce-
Confidence 68999999999999998875432 34554 6999999999999887654 77788777776663
Q ss_pred cCCCCCCCHHHHHHHHH
Q 000984 1141 YGKGGDATEAEIQAASE 1157 (1198)
Q Consensus 1141 ~g~~~~~tdeei~~Al~ 1157 (1198)
|| .+.+++.++++
T Consensus 78 YG----t~~~~v~~~l~ 90 (186)
T 1ex7_A 78 YG----STVASVKQVSK 90 (186)
T ss_dssp EE----EEHHHHHHHHH
T ss_pred ee----eecceeeehhh
Confidence 65 24455655554
|
| >2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426} | Back alignment and structure |
|---|
Probab=96.68 E-value=0.002 Score=67.24 Aligned_cols=27 Identities=22% Similarity=0.274 Sum_probs=23.9
Q ss_pred CEEEEEcCCCCcHHHHHHHHhccCCCC
Q 000984 413 TTAALVGQSGSGKSTVISLIERFYDPQ 439 (1198)
Q Consensus 413 ~~~~ivG~~GsGKStl~~~l~g~~~~~ 439 (1198)
.-+.|.||+|+|||||++++.......
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~~ 81 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAKR 81 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHTT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 689999999999999999999877544
|
| >1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A | Back alignment and structure |
|---|
Probab=96.68 E-value=0.00062 Score=75.28 Aligned_cols=30 Identities=33% Similarity=0.380 Sum_probs=27.5
Q ss_pred EeeCCCEEEEEcCCCCCHHHHHHHHhcccC
Q 000984 1067 KIRAGKTVALVGESGSGKSTVVSLLQRFYD 1096 (1198)
Q Consensus 1067 ~I~~GekvaIVG~SGSGKSTL~~lL~R~yd 1096 (1198)
.+++|+.++|+||+|||||||+..+.+...
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~~ 55 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQIA 55 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 478999999999999999999999998665
|
| >2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A | Back alignment and structure |
|---|
Probab=96.67 E-value=0.00054 Score=78.56 Aligned_cols=50 Identities=24% Similarity=0.475 Sum_probs=37.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcccC-----------CCCCeEEECCcccCCCChHHHHhhcceecccc
Q 000984 1073 TVALVGESGSGKSTVVSLLQRFYD-----------PDAGHITLDGVEIQKLQLKWLRQQMGLVSQEP 1128 (1198)
Q Consensus 1073 kvaIVG~SGSGKSTL~~lL~R~yd-----------p~~G~I~IDG~dI~~i~l~~LR~~IsiV~Qdp 1128 (1198)
+|+|||++|||||||++.|.+... |..|.|.++|.++. +....|++.|.|
T Consensus 181 ~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~v~------l~DT~G~i~~lp 241 (364)
T 2qtf_A 181 SIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKIM------LVDTVGFIRGIP 241 (364)
T ss_dssp EEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEEEE------EEECCCBCSSCC
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEEEE------EEeCCCchhcCC
Confidence 399999999999999999998764 67799999997652 223456666644
|
| >2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax} | Back alignment and structure |
|---|
Probab=96.63 E-value=0.00036 Score=73.25 Aligned_cols=29 Identities=24% Similarity=0.359 Sum_probs=26.3
Q ss_pred EeCCCEEEEEcCCCCcHHHHHHHHhccCC
Q 000984 409 ISSGTTAALVGQSGSGKSTVISLIERFYD 437 (1198)
Q Consensus 409 i~~g~~~~ivG~~GsGKStl~~~l~g~~~ 437 (1198)
..+|..++|+||+||||||+.+.|...++
T Consensus 9 ~~~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 46899999999999999999999998774
|
| >1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A* | Back alignment and structure |
|---|
Probab=96.62 E-value=0.00029 Score=74.36 Aligned_cols=41 Identities=32% Similarity=0.323 Sum_probs=36.1
Q ss_pred EEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCC--eEEECC
Q 000984 407 ISISSGTTAALVGQSGSGKSTVISLIERFYDPQAG--EVLIDG 447 (1198)
Q Consensus 407 l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G--~i~i~g 447 (1198)
+.+++|.+++|+|++||||||+.+.|.+.+.|..| .+.+||
T Consensus 20 ~~~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~ 62 (211)
T 1m7g_A 20 LRNQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDG 62 (211)
T ss_dssp HHTSSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECH
T ss_pred ccCCCCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECC
Confidence 44678999999999999999999999999887778 777775
|
| >3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A* | Back alignment and structure |
|---|
Probab=96.62 E-value=0.0008 Score=77.35 Aligned_cols=32 Identities=19% Similarity=0.556 Sum_probs=29.0
Q ss_pred ccccceEEeeCCCEEEEEcCCCCCHHHHHHHHh
Q 000984 1060 VFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQ 1092 (1198)
Q Consensus 1060 vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~ 1092 (1198)
.++++++++++| .++|+||||||||||+.+|.
T Consensus 13 ~~~~~~i~~~~g-~~~i~G~NGaGKTTll~ai~ 44 (365)
T 3qf7_A 13 GLKNVDIEFQSG-ITVVEGPNGAGKSSLFEAIS 44 (365)
T ss_dssp TEEEEEEECCSE-EEEEECCTTSSHHHHHHHHH
T ss_pred CccceEEecCCC-eEEEECCCCCCHHHHHHHHH
Confidence 367889999999 78899999999999999987
|
| >3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A | Back alignment and structure |
|---|
Probab=96.59 E-value=0.0014 Score=70.19 Aligned_cols=28 Identities=18% Similarity=0.114 Sum_probs=25.1
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhccCCC
Q 000984 411 SGTTAALVGQSGSGKSTVISLIERFYDP 438 (1198)
Q Consensus 411 ~g~~~~ivG~~GsGKStl~~~l~g~~~~ 438 (1198)
++..+.|+||+|+|||||++.+...+..
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~~~ 78 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARANE 78 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 6889999999999999999999987643
|
| >1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=96.58 E-value=0.0002 Score=81.85 Aligned_cols=73 Identities=16% Similarity=0.225 Sum_probs=57.7
Q ss_pred cccccceEEeeCCCE--EEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCC-CChHHHHhhcceeccccccc
Q 000984 1059 QVFRDLNLKIRAGKT--VALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQK-LQLKWLRQQMGLVSQEPVLF 1131 (1198)
Q Consensus 1059 ~vL~~is~~I~~Gek--vaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~~-i~l~~LR~~IsiV~Qdp~LF 1131 (1198)
.+++.++..|+.|+. +.++||+|+||||+++++.+...+..+.+.+.+.+..+ .+.+.+|+.+..++|....|
T Consensus 32 ~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~ir~~i~~~~~~~~~~ 107 (340)
T 1sxj_C 32 EVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELNASDDRGIDVVRNQIKDFASTRQIF 107 (340)
T ss_dssp HHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEECTTSCCSHHHHHTHHHHHHHBCCSS
T ss_pred HHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCCccceEEEEcCcccccHHHHHHHHHHHHhhcccC
Confidence 489999999999998 99999999999999999999987777766555555543 45678888777666654333
|
| >2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=96.55 E-value=0.00049 Score=70.99 Aligned_cols=45 Identities=31% Similarity=0.403 Sum_probs=36.8
Q ss_pred EEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeE-EECCcccC
Q 000984 1066 LKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHI-TLDGVEIQ 1110 (1198)
Q Consensus 1066 ~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I-~IDG~dI~ 1110 (1198)
+..++|..+.|+|++||||||+++.|.+.+.+..|.+ .+||-+++
T Consensus 8 ~~~~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~d~~~ 53 (186)
T 2yvu_A 8 KCIEKGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDGDWAR 53 (186)
T ss_dssp CCCSCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHH
T ss_pred cccCCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEeeHHHHH
Confidence 3456789999999999999999999999988777765 57765543
|
| >1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.52 E-value=0.0011 Score=68.26 Aligned_cols=32 Identities=16% Similarity=0.386 Sum_probs=26.7
Q ss_pred cceEEeeCCCEEEEEcCCCCCHHHHHHHHhcc
Q 000984 1063 DLNLKIRAGKTVALVGESGSGKSTVVSLLQRF 1094 (1198)
Q Consensus 1063 ~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ 1094 (1198)
++|++.++|..++|+|++||||||+.+.|...
T Consensus 2 ~~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 2 PGSMEQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp ----CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcCcCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 57889999999999999999999999999876
|
| >1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A* | Back alignment and structure |
|---|
Probab=96.51 E-value=0.0014 Score=64.92 Aligned_cols=31 Identities=32% Similarity=0.535 Sum_probs=25.2
Q ss_pred cceeEEEeCCCEEEEEcCCCCcHHHHHHHHhc
Q 000984 403 SGFSISISSGTTAALVGQSGSGKSTVISLIER 434 (1198)
Q Consensus 403 ~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g 434 (1198)
++..+++.+| +.+|+|||||||||++.+|.-
T Consensus 15 ~~~~i~f~~g-~~~I~G~NGsGKStil~Ai~~ 45 (149)
T 1f2t_A 15 SDTVVEFKEG-INLIIGQNGSGKSSLLDAILV 45 (149)
T ss_dssp SSEEEECCSE-EEEEECCTTSSHHHHHHHHHH
T ss_pred cceEEEcCCC-eEEEECCCCCCHHHHHHHHHH
Confidence 4455666655 899999999999999999873
|
| >1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A* | Back alignment and structure |
|---|
Probab=96.50 E-value=0.0034 Score=70.96 Aligned_cols=29 Identities=14% Similarity=0.181 Sum_probs=24.8
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhccCCCC
Q 000984 411 SGTTAALVGQSGSGKSTVISLIERFYDPQ 439 (1198)
Q Consensus 411 ~g~~~~ivG~~GsGKStl~~~l~g~~~~~ 439 (1198)
.+..+.|.||+|+|||||++++.+.+...
T Consensus 36 ~~~~lll~G~~GtGKT~la~~i~~~~~~~ 64 (324)
T 1l8q_A 36 LYNPIFIYGSVGTGKTHLLQAAGNEAKKR 64 (324)
T ss_dssp SCSSEEEECSSSSSHHHHHHHHHHHHHHT
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHHHC
Confidence 35689999999999999999999877543
|
| >1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A | Back alignment and structure |
|---|
Probab=96.48 E-value=0.0094 Score=67.86 Aligned_cols=37 Identities=16% Similarity=0.197 Sum_probs=29.5
Q ss_pred ccccceeEE---EeCCCEEEEEcCCCCcHHHHHHHHhccCC
Q 000984 400 QIFSGFSIS---ISSGTTAALVGQSGSGKSTVISLIERFYD 437 (1198)
Q Consensus 400 ~~l~~i~l~---i~~g~~~~ivG~~GsGKStl~~~l~g~~~ 437 (1198)
+.|+.+ +. +++|+.+.|.|++|||||||+..++....
T Consensus 49 ~~LD~~-Lg~GGl~~G~ii~I~G~pGsGKTtLal~la~~~~ 88 (356)
T 1u94_A 49 LSLDIA-LGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQ 88 (356)
T ss_dssp HHHHHH-TSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred HHHHHH-hccCCccCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 345554 33 78999999999999999999988876543
|
| >1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B* | Back alignment and structure |
|---|
Probab=96.47 E-value=0.0014 Score=67.62 Aligned_cols=33 Identities=15% Similarity=0.466 Sum_probs=20.9
Q ss_pred cccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhc
Q 000984 401 IFSGFSISISSGTTAALVGQSGSGKSTVISLIER 434 (1198)
Q Consensus 401 ~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g 434 (1198)
+++++++..++. +++++|++|+|||||++.+.+
T Consensus 13 ~l~~~~~~~~~~-ki~~vG~~~vGKSsli~~l~~ 45 (190)
T 1m2o_B 13 VLASLGLWNKHG-KLLFLGLDNAGKTTLLHMLKN 45 (190)
T ss_dssp -----------C-EEEEEESTTSSHHHHHHHHHH
T ss_pred HHHHhhccCCcc-EEEEECCCCCCHHHHHHHHhc
Confidence 788999988776 899999999999999999997
|
| >2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
Probab=96.46 E-value=0.0011 Score=72.03 Aligned_cols=48 Identities=23% Similarity=0.403 Sum_probs=38.8
Q ss_pred cccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCC
Q 000984 1061 FRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQK 1111 (1198)
Q Consensus 1061 L~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~~ 1111 (1198)
+++.+ ..+++..+.|+|++||||||+++.|.+.+. .|.+.+||-+++.
T Consensus 23 ~~~~~-~~~~~~~i~l~G~~GsGKSTla~~L~~~l~--~~~~~~~~D~~r~ 70 (253)
T 2p5t_B 23 TRGKK-SSKQPIAILLGGQSGAGKTTIHRIKQKEFQ--GNIVIIDGDSFRS 70 (253)
T ss_dssp HTTCC-CCSSCEEEEEESCGGGTTHHHHHHHHHHTT--TCCEEECGGGGGT
T ss_pred HccCC-cccCCeEEEEECCCCCCHHHHHHHHHHhcC--CCcEEEecHHHHH
Confidence 44444 566788999999999999999999999875 3678999987754
|
| >2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A* | Back alignment and structure |
|---|
Probab=96.44 E-value=0.0013 Score=77.99 Aligned_cols=56 Identities=16% Similarity=0.250 Sum_probs=47.8
Q ss_pred cceEEeeCCCEEEEEcCCCCCHHHHHHHHhc--ccCCCCCeEEECCcccCCCChHHHH
Q 000984 1063 DLNLKIRAGKTVALVGESGSGKSTVVSLLQR--FYDPDAGHITLDGVEIQKLQLKWLR 1118 (1198)
Q Consensus 1063 ~is~~I~~GekvaIVG~SGSGKSTL~~lL~R--~ydp~~G~I~IDG~dI~~i~l~~LR 1118 (1198)
-+++++.+|..+.|+|.|||||||+++.|.. ++.+..|++.+.++|.+...+..+.
T Consensus 159 pv~ldL~~~pHlLIaG~TGSGKSt~L~~li~sLl~~~~p~~v~l~liDpK~~el~~~~ 216 (512)
T 2ius_A 159 PVVADLAKMPHLLVAGTTGSGASVGVNAMILSMLYKAQPEDVRFIMIDPKMLELSVYE 216 (512)
T ss_dssp EEEEEGGGSCSEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECCSSSGGGGGT
T ss_pred EEEEEcccCceEEEECCCCCCHHHHHHHHHHHHHHhCCCceEEEEEECCchhhhhhhc
Confidence 4778888999999999999999999998876 6777779999999998877666554
|
| >3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=96.43 E-value=0.0062 Score=67.23 Aligned_cols=28 Identities=21% Similarity=0.297 Sum_probs=24.8
Q ss_pred EeCCCEEEEEcCCCCcHHHHHHHHhccC
Q 000984 409 ISSGTTAALVGQSGSGKSTVISLIERFY 436 (1198)
Q Consensus 409 i~~g~~~~ivG~~GsGKStl~~~l~g~~ 436 (1198)
+.++.-+.|.||+|+|||||++++.+.+
T Consensus 48 ~~~~~~~ll~G~~GtGKT~la~~la~~~ 75 (285)
T 3h4m_A 48 IEPPKGILLYGPPGTGKTLLAKAVATET 75 (285)
T ss_dssp CCCCSEEEEESSSSSSHHHHHHHHHHHT
T ss_pred CCCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 3567789999999999999999999875
|
| >2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A | Back alignment and structure |
|---|
Probab=96.40 E-value=0.0017 Score=65.99 Aligned_cols=27 Identities=22% Similarity=0.432 Sum_probs=23.5
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHhccC
Q 000984 410 SSGTTAALVGQSGSGKSTVISLIERFY 436 (1198)
Q Consensus 410 ~~g~~~~ivG~~GsGKStl~~~l~g~~ 436 (1198)
++|.+++|+|++|+|||||++.|.|..
T Consensus 2 ~~~~ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 2 SHGMKVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 468899999999999999999999864
|
| >4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A* | Back alignment and structure |
|---|
Probab=96.39 E-value=0.0045 Score=73.47 Aligned_cols=56 Identities=14% Similarity=0.213 Sum_probs=36.5
Q ss_pred HHHHHHhHHHhhccCCCEEEEeCCC-CCCCHHhHHHHHHHHHHHhCCCeEEEEecCcchh
Q 000984 526 GQKQRIAIARAILKDPRILLLDEAT-SALDAESEKVVQEALDRIMVNRTTVIVAHRLSTV 584 (1198)
Q Consensus 526 Gqkqri~lARal~~~~~illlDe~t-s~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~ 584 (1198)
.|++....++..+++++++|+.-.. ..+... ...+.+.+++ .++.+|++.++.+..
T Consensus 88 ~~~~~~~~~~~~~~~ad~il~VvD~~~~~~~~-d~~l~~~l~~--~~~pvilV~NK~D~~ 144 (456)
T 4dcu_A 88 FLAQIRQQAEIAMDEADVIIFMVNGREGVTAA-DEEVAKILYR--TKKPVVLAVNKLDNT 144 (456)
T ss_dssp CHHHHHHHHHHHHHHCSEEEEEEESSSCSCHH-HHHHHHHHTT--CCSCEEEEEECC---
T ss_pred HHHHHHHHHHhhHhhCCEEEEEEeCCCCCChH-HHHHHHHHHH--cCCCEEEEEECccch
Confidence 4888888899999999977765443 334433 3445555543 478899999888754
|
| >2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.39 E-value=0.0013 Score=75.41 Aligned_cols=41 Identities=22% Similarity=0.418 Sum_probs=35.0
Q ss_pred EeeCCCEEEEEcCCCCCHHHHHHHHhcc-----------cCCCCCeEEECCc
Q 000984 1067 KIRAGKTVALVGESGSGKSTVVSLLQRF-----------YDPDAGHITLDGV 1107 (1198)
Q Consensus 1067 ~I~~GekvaIVG~SGSGKSTL~~lL~R~-----------ydp~~G~I~IDG~ 1107 (1198)
.+..|.++||||++|+|||||++.|.+- .+|..|.+.++|.
T Consensus 18 ~i~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~ 69 (396)
T 2ohf_A 18 RFGTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDE 69 (396)
T ss_dssp CSSSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCH
T ss_pred hccCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCc
Confidence 5678899999999999999999999998 7788899888774
|
| >1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=96.37 E-value=0.0011 Score=72.33 Aligned_cols=64 Identities=20% Similarity=0.295 Sum_probs=42.0
Q ss_pred ccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHhhcceeccc
Q 000984 1060 VFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMGLVSQE 1127 (1198)
Q Consensus 1060 vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~~i~l~~LR~~IsiV~Qd 1127 (1198)
.++++++.+++| +.|+||+|+||||++++|.+..... -+.+++.++.+.-.....+++.-++|+
T Consensus 36 ~~~~~~~~~~~~--vll~G~~GtGKT~la~~la~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~ 99 (257)
T 1lv7_A 36 RFQKLGGKIPKG--VLMVGPPGTGKTLLAKAIAGEAKVP--FFTISGSDFVEMFVGVGASRVRDMFEQ 99 (257)
T ss_dssp GC-----CCCCE--EEEECCTTSCHHHHHHHHHHHHTCC--EEEECSCSSTTSCCCCCHHHHHHHHHH
T ss_pred HHHHcCCCCCCe--EEEECcCCCCHHHHHHHHHHHcCCC--EEEEeHHHHHHHhhhhhHHHHHHHHHH
Confidence 456666666665 9999999999999999999987643 588999888665433333344444443
|
| >2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A | Back alignment and structure |
|---|
Probab=96.35 E-value=0.001 Score=76.10 Aligned_cols=59 Identities=22% Similarity=0.245 Sum_probs=42.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHhhcceeccccccccccHHHHHhcCCCCCCCHHHH
Q 000984 1073 TVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEI 1152 (1198)
Q Consensus 1073 kvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~~i~l~~LR~~IsiV~Qdp~LF~gTIreNI~~g~~~~~tdeei 1152 (1198)
++||||++|+|||||+++|.+.. + ++.+++.. |+..|+.+. .++++++
T Consensus 3 ~v~IVG~pnvGKSTL~n~L~~~~-~----------~v~~~p~~------------------Ti~pn~g~~---~v~~~~l 50 (368)
T 2dby_A 3 AVGIVGLPNVGKSTLFNALTRAN-A----------LAANYPFA------------------TIDKNVGVV---PLEDERL 50 (368)
T ss_dssp SEEEECCSSSSHHHHHHHHHHHH-T----------TCSSCCGG------------------GGSTTEEEE---ECCCHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCC-C----------cccCCCCc------------------eeccceeeE---ecChHHH
Confidence 58999999999999999999974 3 23333322 677777553 3567778
Q ss_pred HHHHHHcchHH
Q 000984 1153 QAASEMANAHK 1163 (1198)
Q Consensus 1153 ~~Al~~A~l~d 1163 (1198)
..+++.++.++
T Consensus 51 ~~~~~~~~~~~ 61 (368)
T 2dby_A 51 YALQRTFAKGE 61 (368)
T ss_dssp HHHHHHHCBTT
T ss_pred HHHHHHhcccc
Confidence 88887777654
|
| >1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A | Back alignment and structure |
|---|
Probab=96.31 E-value=0.0017 Score=66.08 Aligned_cols=38 Identities=24% Similarity=0.274 Sum_probs=30.1
Q ss_pred CEEEEEcCCCCCHHHHHHHHhcccCCC---CCeEEECCccc
Q 000984 1072 KTVALVGESGSGKSTVVSLLQRFYDPD---AGHITLDGVEI 1109 (1198)
Q Consensus 1072 ekvaIVG~SGSGKSTL~~lL~R~ydp~---~G~I~IDG~dI 1109 (1198)
..++|+|+||||||||++.|.+.+.+. -|.|..++.+.
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~~~~~~ 47 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHHDM 47 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC--
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEeeCCCcc
Confidence 579999999999999999999876543 37788887553
|
| >3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=96.31 E-value=0.0015 Score=68.36 Aligned_cols=36 Identities=28% Similarity=0.433 Sum_probs=30.2
Q ss_pred CCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccC
Q 000984 1071 GKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQ 1110 (1198)
Q Consensus 1071 GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~ 1110 (1198)
...|+|+|++||||||+++.|.+.+ |...+|+-++.
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l----g~~~i~~d~~~ 53 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC----GYPFIEGDALH 53 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH----TCCEEEGGGGC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh----CCEEEeCCcCc
Confidence 4689999999999999999998876 66778766653
|
| >3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=96.29 E-value=0.0055 Score=68.39 Aligned_cols=113 Identities=18% Similarity=0.229 Sum_probs=0.0
Q ss_pred eEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcceEEEcCCCCCCcccHHHHHhcCCC
Q 000984 406 SISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKD 485 (1198)
Q Consensus 406 ~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~Ni~~~~~ 485 (1198)
++.++++..+.|.||+|||||||++++.+... .+-+.+++.
T Consensus 43 ~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~--~~~i~v~~~------------------------------------- 83 (301)
T 3cf0_A 43 KFGMTPSKGVLFYGPPGCGKTLLAKAIANECQ--ANFISIKGP------------------------------------- 83 (301)
T ss_dssp HHCCCCCSEEEEECSSSSSHHHHHHHHHHHTT--CEEEEECHH-------------------------------------
T ss_pred HcCCCCCceEEEECCCCcCHHHHHHHHHHHhC--CCEEEEEhH-------------------------------------
Q ss_pred CCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhhccCCCEEEEeCCC-------------CC
Q 000984 486 DATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEAT-------------SA 552 (1198)
Q Consensus 486 ~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal~~~~~illlDe~t-------------s~ 552 (1198)
+=....+|+. .++.+-.+.+|--..|.++++||.- +.
T Consensus 84 ------------------------~l~~~~~g~~------~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~ 133 (301)
T 3cf0_A 84 ------------------------ELLTMWFGES------EANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGG 133 (301)
T ss_dssp ------------------------HHHHHHHTTC------TTHHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSC
T ss_pred ------------------------HHHhhhcCch------HHHHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcch
Q ss_pred CCHHhHHHHHHHHH--HHhCCCeEEEEecCcchhhcc
Q 000984 553 LDAESEKVVQEALD--RIMVNRTTVIVAHRLSTVRNA 587 (1198)
Q Consensus 553 lD~~~~~~i~~~i~--~~~~~~t~i~itH~~~~~~~~ 587 (1198)
........+.+.+. ....+..+|..||+.+.+..+
T Consensus 134 ~~~~~~~~lL~~l~~~~~~~~v~vi~atn~~~~ld~a 170 (301)
T 3cf0_A 134 AADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPA 170 (301)
T ss_dssp SCCHHHHHHHHHHHSSCTTSSEEEEEEESCGGGSCGG
T ss_pred HHHHHHHHHHHHhhcccCCCCEEEEEecCCccccChH
|
| >3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A* | Back alignment and structure |
|---|
Probab=96.25 E-value=0.0003 Score=74.96 Aligned_cols=25 Identities=32% Similarity=0.425 Sum_probs=21.8
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhccC
Q 000984 412 GTTAALVGQSGSGKSTVISLIERFY 436 (1198)
Q Consensus 412 g~~~~ivG~~GsGKStl~~~l~g~~ 436 (1198)
.-.++|+||+||||||+.+.|.+.+
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~l 33 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARAL 33 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3489999999999999999998543
|
| >2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A* | Back alignment and structure |
|---|
Probab=96.25 E-value=0.0026 Score=63.90 Aligned_cols=23 Identities=35% Similarity=0.497 Sum_probs=21.1
Q ss_pred CEEEEEcCCCCCHHHHHHHHhcc
Q 000984 1072 KTVALVGESGSGKSTVVSLLQRF 1094 (1198)
Q Consensus 1072 ekvaIVG~SGSGKSTL~~lL~R~ 1094 (1198)
-+++|||++|+|||||++.|.+.
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 37999999999999999999884
|
| >1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A* | Back alignment and structure |
|---|
Probab=96.24 E-value=0.0024 Score=63.21 Aligned_cols=33 Identities=27% Similarity=0.562 Sum_probs=25.0
Q ss_pred cceEEeeCCCEEEEEcCCCCCHHHHHHHHh-cccC
Q 000984 1063 DLNLKIRAGKTVALVGESGSGKSTVVSLLQ-RFYD 1096 (1198)
Q Consensus 1063 ~is~~I~~GekvaIVG~SGSGKSTL~~lL~-R~yd 1096 (1198)
+.+++..+| ..+|+||+|||||||+.+|. -+|.
T Consensus 16 ~~~i~f~~g-~~~I~G~NGsGKStil~Ai~~~l~g 49 (149)
T 1f2t_A 16 DTVVEFKEG-INLIIGQNGSGKSSLLDAILVGLYW 49 (149)
T ss_dssp SEEEECCSE-EEEEECCTTSSHHHHHHHHHHHHHC
T ss_pred ceEEEcCCC-eEEEECCCCCCHHHHHHHHHHHHcC
Confidence 344555555 88999999999999999886 3443
|
| >1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=96.17 E-value=0.001 Score=76.11 Aligned_cols=43 Identities=12% Similarity=0.329 Sum_probs=31.6
Q ss_pred CCCEEEEeCCCCCCCHHhHHHHHHHHHHHhCCCeEEEEecCcch
Q 000984 540 DPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLST 583 (1198)
Q Consensus 540 ~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~ 583 (1198)
+++++++|| ...++......+.+.+.+...+..+|+++++...
T Consensus 133 ~~~vliiDE-~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~ 175 (353)
T 1sxj_D 133 PYKIIILDE-ADSMTADAQSALRRTMETYSGVTRFCLICNYVTR 175 (353)
T ss_dssp SCEEEEETT-GGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGG
T ss_pred CceEEEEEC-CCccCHHHHHHHHHHHHhcCCCceEEEEeCchhh
Confidence 667999999 6778888777777777765545556677776653
|
| >4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A* | Back alignment and structure |
|---|
Probab=96.15 E-value=0.011 Score=66.23 Aligned_cols=32 Identities=13% Similarity=0.172 Sum_probs=27.2
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhccCCCCCCeE
Q 000984 412 GTTAALVGQSGSGKSTVISLIERFYDPQAGEV 443 (1198)
Q Consensus 412 g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i 443 (1198)
...+.++||+|+||||++++|.+.+.+.+|.+
T Consensus 47 ~~~~ll~G~~GtGKt~la~~la~~~~~~~~~~ 78 (311)
T 4fcw_A 47 IGSFLFLGPTGVGKTELAKTLAATLFDTEEAM 78 (311)
T ss_dssp SEEEEEESCSSSSHHHHHHHHHHHHHSCGGGE
T ss_pred ceEEEEECCCCcCHHHHHHHHHHHHcCCCcce
Confidence 35789999999999999999999887766643
|
| >1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F | Back alignment and structure |
|---|
Probab=96.14 E-value=0.0011 Score=73.82 Aligned_cols=45 Identities=24% Similarity=0.311 Sum_probs=39.0
Q ss_pred eeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeec
Q 000984 405 FSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINL 450 (1198)
Q Consensus 405 i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~ 450 (1198)
++++.+ |+.++++|++|+||||++..|.+.+.+..|+|.+.+.|.
T Consensus 92 i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~ 136 (297)
T 1j8m_F 92 VIPDKI-PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADV 136 (297)
T ss_dssp CSCSSS-SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred cccCCC-CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCC
Confidence 677766 999999999999999999999999988888887766554
|
| >1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.12 E-value=0.0018 Score=67.83 Aligned_cols=32 Identities=34% Similarity=0.539 Sum_probs=26.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCccc
Q 000984 1073 TVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEI 1109 (1198)
Q Consensus 1073 kvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI 1109 (1198)
.+||+|++||||||+.+.|.++ |...||+-++
T Consensus 4 ~i~l~G~~GsGKST~~~~La~l-----g~~~id~d~~ 35 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTDL-----GVPLVDADVV 35 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHTT-----TCCEEEHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHC-----CCcccchHHH
Confidence 5899999999999999999983 7777776443
|
| >3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=96.12 E-value=0.014 Score=57.32 Aligned_cols=32 Identities=22% Similarity=0.365 Sum_probs=25.9
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHhccCCCCCC
Q 000984 410 SSGTTAALVGQSGSGKSTVISLIERFYDPQAG 441 (1198)
Q Consensus 410 ~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G 441 (1198)
+.+.-+.|.||+|+|||+++++|........+
T Consensus 22 ~~~~~vll~G~~GtGKt~lA~~i~~~~~~~~~ 53 (145)
T 3n70_A 22 ETDIAVWLYGAPGTGRMTGARYLHQFGRNAQG 53 (145)
T ss_dssp TCCSCEEEESSTTSSHHHHHHHHHHSSTTTTS
T ss_pred CCCCCEEEECCCCCCHHHHHHHHHHhCCccCC
Confidence 34567999999999999999999987654433
|
| >1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.10 E-value=0.0025 Score=65.53 Aligned_cols=32 Identities=22% Similarity=0.368 Sum_probs=26.6
Q ss_pred ceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcc
Q 000984 404 GFSISISSGTTAALVGQSGSGKSTVISLIERF 435 (1198)
Q Consensus 404 ~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~ 435 (1198)
++|++.++|..++|+|++||||||+.+.|...
T Consensus 2 ~~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 2 PGSMEQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp ----CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcCcCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 47888889999999999999999999999876
|
| >2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=96.09 E-value=0.0023 Score=65.69 Aligned_cols=37 Identities=27% Similarity=0.467 Sum_probs=28.5
Q ss_pred CEEEEEcCCCCCHHHHHHHHhcc-----------cCCCCCeEEECCcc
Q 000984 1072 KTVALVGESGSGKSTVVSLLQRF-----------YDPDAGHITLDGVE 1108 (1198)
Q Consensus 1072 ekvaIVG~SGSGKSTL~~lL~R~-----------ydp~~G~I~IDG~d 1108 (1198)
-+|+|||++|+|||||++.|.+- .++..|.+.++|..
T Consensus 8 ~~i~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~ 55 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNGEK 55 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETTEE
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCccccCCCCeeccceEEEEEeCCcE
Confidence 37999999999999999999873 23345667776643
|
| >2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.94 E-value=0.0031 Score=72.37 Aligned_cols=28 Identities=21% Similarity=0.372 Sum_probs=24.8
Q ss_pred EEeCCCEEEEEcCCCCcHHHHHHHHhcc
Q 000984 408 SISSGTTAALVGQSGSGKSTVISLIERF 435 (1198)
Q Consensus 408 ~i~~g~~~~ivG~~GsGKStl~~~l~g~ 435 (1198)
.+..|.+++|||++|+|||||+++|.|.
T Consensus 18 ~i~~~~kvgIVG~pnvGKSTL~n~Ltg~ 45 (396)
T 2ohf_A 18 RFGTSLKIGIVGLPNVGKSTFFNVLTNS 45 (396)
T ss_dssp CSSSCCCEEEECCSSSSHHHHHHHHHC-
T ss_pred hccCCCEEEEECCCCCCHHHHHHHHHCC
Confidence 4567889999999999999999999987
|
| >2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=95.91 E-value=0.0027 Score=65.34 Aligned_cols=35 Identities=29% Similarity=0.451 Sum_probs=30.8
Q ss_pred EeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeE
Q 000984 409 ISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 443 (1198)
Q Consensus 409 i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i 443 (1198)
.++|.++.|+|++||||||+.+.|.+.+.+..|.+
T Consensus 10 ~~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~ 44 (186)
T 2yvu_A 10 IEKGIVVWLTGLPGSGKTTIATRLADLLQKEGYRV 44 (186)
T ss_dssp CSCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred cCCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeE
Confidence 45789999999999999999999999887776665
|
| >1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2 | Back alignment and structure |
|---|
Probab=95.85 E-value=0.0035 Score=69.47 Aligned_cols=58 Identities=22% Similarity=0.245 Sum_probs=40.4
Q ss_pred ccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhc----ccCCCCCeEEECCc-ccCCCChHHHH
Q 000984 1060 VFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQR----FYDPDAGHITLDGV-EIQKLQLKWLR 1118 (1198)
Q Consensus 1060 vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R----~ydp~~G~I~IDG~-dI~~i~l~~LR 1118 (1198)
++++..+.+ .|.-++|+|+||+||||++..|.+ |...+...|...|- ++-..+.+.+|
T Consensus 134 ~~H~~~v~~-~g~~vl~~G~sG~GKSt~a~~l~~~g~~lv~dD~~~i~~~~~~~l~g~~~~~l~ 196 (314)
T 1ko7_A 134 SLHGVLVDV-YGVGVLITGDSGIGKSETALELIKRGHRLVADDNVEIREISKDELIGRAPKLIE 196 (314)
T ss_dssp EEESEEEEE-TTEEEEEEESTTSSHHHHHHHHHHTTCEEEESSEEEEEESSSSCEEEECCGGGT
T ss_pred eeeEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHhcCCceecCCeEEEEEcCCCeEEEcCchhhh
Confidence 577777777 788999999999999999999987 55445555554443 34333334443
|
| >1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A | Back alignment and structure |
|---|
Probab=95.73 E-value=0.0038 Score=63.37 Aligned_cols=28 Identities=21% Similarity=0.211 Sum_probs=24.2
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhccCCCC
Q 000984 412 GTTAALVGQSGSGKSTVISLIERFYDPQ 439 (1198)
Q Consensus 412 g~~~~ivG~~GsGKStl~~~l~g~~~~~ 439 (1198)
-..++|+|++|||||||++.|++.+.+.
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l~~~ 33 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPALCAR 33 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhcccc
Confidence 3589999999999999999999976543
|
| >2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A* | Back alignment and structure |
|---|
Probab=95.72 E-value=0.0071 Score=60.64 Aligned_cols=23 Identities=30% Similarity=0.442 Sum_probs=21.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhccC
Q 000984 414 TAALVGQSGSGKSTVISLIERFY 436 (1198)
Q Consensus 414 ~~~ivG~~GsGKStl~~~l~g~~ 436 (1198)
+++|+|++|+|||||++.+.|..
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~~ 27 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGEN 27 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999864
|
| >2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B* | Back alignment and structure |
|---|
Probab=95.71 E-value=0.0047 Score=63.28 Aligned_cols=23 Identities=35% Similarity=0.618 Sum_probs=21.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhccc
Q 000984 1073 TVALVGESGSGKSTVVSLLQRFY 1095 (1198)
Q Consensus 1073 kvaIVG~SGSGKSTL~~lL~R~y 1095 (1198)
||+|||++|+|||||++.|.+..
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~~ 26 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKTK 26 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC-
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 79999999999999999999864
|
| >2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A* | Back alignment and structure |
|---|
Probab=95.71 E-value=0.00066 Score=70.96 Aligned_cols=23 Identities=35% Similarity=0.517 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhccC
Q 000984 414 TAALVGQSGSGKSTVISLIERFY 436 (1198)
Q Consensus 414 ~~~ivG~~GsGKStl~~~l~g~~ 436 (1198)
+++|+|++||||||+.+.|...+
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l 24 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKL 24 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHhc
Confidence 68999999999999999999844
|
| >2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A* | Back alignment and structure |
|---|
Probab=95.68 E-value=0.017 Score=63.96 Aligned_cols=28 Identities=14% Similarity=0.269 Sum_probs=25.1
Q ss_pred EEeCCCEEEEEcCCCCcHHHHHHHHhcc
Q 000984 408 SISSGTTAALVGQSGSGKSTVISLIERF 435 (1198)
Q Consensus 408 ~i~~g~~~~ivG~~GsGKStl~~~l~g~ 435 (1198)
-+++|..+.|.||+|||||||+..+...
T Consensus 119 Gi~~gsviLI~GpPGsGKTtLAlqlA~~ 146 (331)
T 2vhj_A 119 HRYASGMVIVTGKGNSGKTPLVHALGEA 146 (331)
T ss_dssp EEEESEEEEEECSCSSSHHHHHHHHHHH
T ss_pred CCCCCcEEEEEcCCCCCHHHHHHHHHHh
Confidence 5788999999999999999999998754
|
| >1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A* | Back alignment and structure |
|---|
Probab=95.66 E-value=0.014 Score=62.19 Aligned_cols=45 Identities=13% Similarity=0.160 Sum_probs=30.3
Q ss_pred cCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhCCCeEEEEecCcchh
Q 000984 539 KDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTV 584 (1198)
Q Consensus 539 ~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~ 584 (1198)
.++.++++||+-. +|......+.+.+.+...+..+|++|++...+
T Consensus 125 ~~~~vlviDe~~~-l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~~~ 169 (250)
T 1njg_A 125 GRFKVYLIDEVHM-LSRHSFNALLKTLEEPPEHVKFLLATTDPQKL 169 (250)
T ss_dssp SSSEEEEEETGGG-SCHHHHHHHHHHHHSCCTTEEEEEEESCGGGS
T ss_pred CCceEEEEECccc-ccHHHHHHHHHHHhcCCCceEEEEEeCChHhC
Confidence 4578999999765 67766666666665433445677778776543
|
| >2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
Probab=95.65 E-value=0.0036 Score=67.98 Aligned_cols=41 Identities=32% Similarity=0.468 Sum_probs=33.0
Q ss_pred EEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeec
Q 000984 408 SISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINL 450 (1198)
Q Consensus 408 ~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~ 450 (1198)
..+++..+.|+|++||||||+.+.|.+.+. .|.+.+||-.+
T Consensus 28 ~~~~~~~i~l~G~~GsGKSTla~~L~~~l~--~~~~~~~~D~~ 68 (253)
T 2p5t_B 28 SSKQPIAILLGGQSGAGKTTIHRIKQKEFQ--GNIVIIDGDSF 68 (253)
T ss_dssp CCSSCEEEEEESCGGGTTHHHHHHHHHHTT--TCCEEECGGGG
T ss_pred cccCCeEEEEECCCCCCHHHHHHHHHHhcC--CCcEEEecHHH
Confidence 345678999999999999999999998774 35677887443
|
| >3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0 | Back alignment and structure |
|---|
Probab=95.64 E-value=0.0076 Score=61.74 Aligned_cols=36 Identities=36% Similarity=0.565 Sum_probs=28.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhc-c----cCCCCC----eEEECCcc
Q 000984 1073 TVALVGESGSGKSTVVSLLQR-F----YDPDAG----HITLDGVE 1108 (1198)
Q Consensus 1073 kvaIVG~SGSGKSTL~~lL~R-~----ydp~~G----~I~IDG~d 1108 (1198)
||+|||++|+|||||++.+.+ - +.|+.| .+.++|..
T Consensus 22 ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~ 66 (184)
T 3ihw_A 22 KVGIVGNLSSGKSALVHRYLTGTYVQEESPEGGRFKKEIVVDGQS 66 (184)
T ss_dssp EEEEECCTTSCHHHHHHHHHHSSCCCCCCTTCEEEEEEEEETTEE
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCcCCCcceEEEEEEECCEE
Confidence 799999999999999975544 3 667767 67888854
|
| >2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A* | Back alignment and structure |
|---|
Probab=95.60 E-value=0.0022 Score=72.14 Aligned_cols=37 Identities=38% Similarity=0.509 Sum_probs=33.8
Q ss_pred cccccceEEeeCCCE--EEEEcCCCCCHHHHHHHHhccc
Q 000984 1059 QVFRDLNLKIRAGKT--VALVGESGSGKSTVVSLLQRFY 1095 (1198)
Q Consensus 1059 ~vL~~is~~I~~Gek--vaIVG~SGSGKSTL~~lL~R~y 1095 (1198)
.+|+++++.+++|+. ++|+|++||||||+.++|.+.+
T Consensus 10 ~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l 48 (359)
T 2ga8_A 10 DVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQII 48 (359)
T ss_dssp HHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHh
Confidence 478999999999999 9999999999999999988754
|
| >2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.58 E-value=0.0012 Score=75.74 Aligned_cols=56 Identities=21% Similarity=0.231 Sum_probs=35.7
Q ss_pred cccEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEE
Q 000984 381 RGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLI 445 (1198)
Q Consensus 381 ~g~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i 445 (1198)
.+.|.++|++..|.. +.++++++|+| +|+|++|+|||||++.|++.-.+..|.+..
T Consensus 15 ~~~v~~~~l~~~~~~---k~~~~~~~~~I------~vvG~~g~GKSTLln~L~~~~~~~~~~~~~ 70 (361)
T 2qag_A 15 PGYVGFANLPNQVHR---KSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPERVIPG 70 (361)
T ss_dssp ------CCHHHHHHT---HHHHHCCEECE------EECCCTTSCHHHHHHHHTTCCC--------
T ss_pred CceEEeccchHHhCC---eeecCCCCEEE------EEEcCCCCCHHHHHHHHhCCCCCCCCcccC
Confidence 456888888887742 45789999876 999999999999999999876555554433
|
| >2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=95.57 E-value=0.0061 Score=63.61 Aligned_cols=21 Identities=38% Similarity=0.710 Sum_probs=20.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 000984 1073 TVALVGESGSGKSTVVSLLQR 1093 (1198)
Q Consensus 1073 kvaIVG~SGSGKSTL~~lL~R 1093 (1198)
+++|+|++||||||+++.|.+
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 699999999999999999998
|
| >3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=95.57 E-value=0.004 Score=65.00 Aligned_cols=32 Identities=38% Similarity=0.501 Sum_probs=26.8
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECC
Q 000984 412 GTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDG 447 (1198)
Q Consensus 412 g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g 447 (1198)
..+++|+|++||||||+.+.|.+.+ |...+++
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l----g~~~i~~ 49 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC----GYPFIEG 49 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH----TCCEEEG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh----CCEEEeC
Confidence 4689999999999999999998876 5555654
|
| >3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A* | Back alignment and structure |
|---|
Probab=95.55 E-value=0.0069 Score=63.31 Aligned_cols=30 Identities=33% Similarity=0.575 Sum_probs=24.4
Q ss_pred cceeEEEeCCCEEEEEcCCCCcHHHHHHHHh
Q 000984 403 SGFSISISSGTTAALVGQSGSGKSTVISLIE 433 (1198)
Q Consensus 403 ~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~ 433 (1198)
++.++++.+| +.+|+|||||||||++.+|.
T Consensus 15 ~~~~i~f~~~-~~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 15 SDTVVEFKEG-INLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp SSEEEECCSE-EEEEECCTTSSHHHHHHHHH
T ss_pred cceEEEeCCC-eEEEEcCCCCCHHHHHHHHH
Confidence 3455666654 99999999999999999886
|
| >3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.53 E-value=0.0091 Score=64.07 Aligned_cols=28 Identities=29% Similarity=0.380 Sum_probs=23.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcccCCCCC
Q 000984 1073 TVALVGESGSGKSTVVSLLQRFYDPDAG 1100 (1198)
Q Consensus 1073 kvaIVG~SGSGKSTL~~lL~R~ydp~~G 1100 (1198)
+|+|||++|+|||||++.|++-..+.+|
T Consensus 31 ~i~lvG~~g~GKStlin~l~g~~~~~~~ 58 (239)
T 3lxx_A 31 RIVLVGKTGAGKSATGNSILGRKVFHSG 58 (239)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSCCSCC-
T ss_pred EEEEECCCCCCHHHHHHHHcCCCcCccC
Confidence 6899999999999999999986655444
|
| >3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=95.51 E-value=0.0063 Score=62.35 Aligned_cols=27 Identities=33% Similarity=0.517 Sum_probs=23.4
Q ss_pred eCCCEEEEEcCCCCCHHHHHHHHhccc
Q 000984 1069 RAGKTVALVGESGSGKSTVVSLLQRFY 1095 (1198)
Q Consensus 1069 ~~GekvaIVG~SGSGKSTL~~lL~R~y 1095 (1198)
.+|..++|+|++||||||+.+.|.+-+
T Consensus 2 ~~g~~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 2 DVGQAVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 468899999999999999999998644
|
| >1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=95.51 E-value=0.0092 Score=67.77 Aligned_cols=36 Identities=28% Similarity=0.526 Sum_probs=31.4
Q ss_pred CCEEEEEcCCCCCHHHHHHHHhc-----------ccCCCCCeEEECC
Q 000984 1071 GKTVALVGESGSGKSTVVSLLQR-----------FYDPDAGHITLDG 1106 (1198)
Q Consensus 1071 GekvaIVG~SGSGKSTL~~lL~R-----------~ydp~~G~I~IDG 1106 (1198)
|-++||||++|+|||||++.|.+ -.+|..|.+.++|
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~ 48 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPD 48 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCC
Confidence 56899999999999999999998 3468888888776
|
| >2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=95.51 E-value=0.006 Score=62.42 Aligned_cols=22 Identities=32% Similarity=0.483 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcc
Q 000984 414 TAALVGQSGSGKSTVISLIERF 435 (1198)
Q Consensus 414 ~~~ivG~~GsGKStl~~~l~g~ 435 (1198)
+++++|++|+|||||++.|.+.
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 7899999999999999999984
|
| >4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A | Back alignment and structure |
|---|
Probab=95.49 E-value=0.0065 Score=70.59 Aligned_cols=61 Identities=18% Similarity=0.241 Sum_probs=41.8
Q ss_pred ccccccceEEe---eCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHhhcc
Q 000984 1058 VQVFRDLNLKI---RAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMG 1122 (1198)
Q Consensus 1058 ~~vL~~is~~I---~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~~i~l~~LR~~Is 1122 (1198)
.||+-|+ +.. ..+..++|+|+|||||||+++.|...+.+..+.|.+- |.. -+...+.+.++
T Consensus 20 ~~v~~d~-~~~~~~~~~~~~~i~G~~G~GKs~~~~~~~~~~~~~~~~~~~~--D~~-~~~~~~~~~~g 83 (392)
T 4ag6_A 20 GLVLVDI-WKRGGDRTNSNWTILAKPGAGKSFTAKMLLLREYMQGSRVIII--DPE-REYKEMCRKLG 83 (392)
T ss_dssp CEEEECT-TCCBTTBCCCCEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEE--ESS-CCSHHHHHHTT
T ss_pred CeEEEec-ccCcCccccCceEEEcCCCCCHHHHHHHHHHHHHHCCCEEEEE--eCC-cCHHHHHHHcC
Confidence 3566555 332 2677899999999999999999988777777888773 322 23444444443
|
| >2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.41 E-value=0.059 Score=58.29 Aligned_cols=26 Identities=23% Similarity=0.304 Sum_probs=22.5
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhccC
Q 000984 411 SGTTAALVGQSGSGKSTVISLIERFY 436 (1198)
Q Consensus 411 ~g~~~~ivG~~GsGKStl~~~l~g~~ 436 (1198)
+..-+.|.||+|+||||+++++.+.+
T Consensus 38 ~~~~vll~G~~GtGKT~la~~la~~~ 63 (262)
T 2qz4_A 38 VPKGALLLGPPGCGKTLLAKAVATEA 63 (262)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHh
Confidence 34568899999999999999999865
|
| >3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=95.40 E-value=0.065 Score=62.28 Aligned_cols=29 Identities=31% Similarity=0.613 Sum_probs=24.9
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhccCCCC
Q 000984 411 SGTTAALVGQSGSGKSTVISLIERFYDPQ 439 (1198)
Q Consensus 411 ~g~~~~ivG~~GsGKStl~~~l~g~~~~~ 439 (1198)
++..++++|++|+||||++..|...+...
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~ 127 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKR 127 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTT
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHC
Confidence 35689999999999999999999877543
|
| >2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus} | Back alignment and structure |
|---|
Probab=95.35 E-value=0.023 Score=66.99 Aligned_cols=107 Identities=15% Similarity=0.153 Sum_probs=64.5
Q ss_pred ccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcceEEEcCCCCCCcccHHHH
Q 000984 400 QIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDN 479 (1198)
Q Consensus 400 ~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~N 479 (1198)
+.|+.+.--+++|+++.|.|++|+|||||+.-++.......|. .+.|++=+
T Consensus 188 ~~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~------------------~vl~~slE----------- 238 (444)
T 2q6t_A 188 KELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNAALKEGV------------------GVGIYSLE----------- 238 (444)
T ss_dssp HHHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCC------------------CEEEEESS-----------
T ss_pred HhhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCC------------------eEEEEECC-----------
Confidence 3566665458999999999999999999998887754322221 23333221
Q ss_pred HhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhhccCCCEEEEeCCCCC
Q 000984 480 IAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSA 552 (1198)
Q Consensus 480 i~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal~~~~~illlDe~ts~ 552 (1198)
.+.+++..-... ... |.+..--.. ..|+..+.+|+.-|-..+.+.++++.|+|...
T Consensus 239 -------~~~~~l~~R~~~-----~~~----~i~~~~l~~-g~l~~~~~~~~~~a~~~l~~~~l~i~d~~~~s 294 (444)
T 2q6t_A 239 -------MPAAQLTLRMMC-----SEA----RIDMNRVRL-GQLTDRDFSRLVDVASRLSEAPIYIDDTPDLT 294 (444)
T ss_dssp -------SCHHHHHHHHHH-----HHT----TCCTTTCCG-GGCCHHHHHHHHHHHHHHHTSCEEEECCTTCB
T ss_pred -------CCHHHHHHHHHH-----HHc----CCCHHHHhC-CCCCHHHHHHHHHHHHHHhcCCEEEECCCCCC
Confidence 223333221110 001 111110011 25899999999888777888889998876443
|
| >1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X | Back alignment and structure |
|---|
Probab=95.35 E-value=0.0052 Score=68.55 Aligned_cols=25 Identities=32% Similarity=0.357 Sum_probs=22.2
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHhcc
Q 000984 1070 AGKTVALVGESGSGKSTVVSLLQRF 1094 (1198)
Q Consensus 1070 ~GekvaIVG~SGSGKSTL~~lL~R~ 1094 (1198)
++.+|||||++|+|||||++.|.+.
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~ 31 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQ 31 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCC
Confidence 3448999999999999999999975
|
| >1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A | Back alignment and structure |
|---|
Probab=95.30 E-value=0.0086 Score=68.11 Aligned_cols=67 Identities=19% Similarity=0.241 Sum_probs=45.1
Q ss_pred EeeCCCEEEEEcCCCCCHHHHHHHHhccc-CC------CCCeEEECCcccCCCChHHHH---hhcceeccccccccccHH
Q 000984 1067 KIRAGKTVALVGESGSGKSTVVSLLQRFY-DP------DAGHITLDGVEIQKLQLKWLR---QQMGLVSQEPVLFNDTIR 1136 (1198)
Q Consensus 1067 ~I~~GekvaIVG~SGSGKSTL~~lL~R~y-dp------~~G~I~IDG~dI~~i~l~~LR---~~IsiV~Qdp~LF~gTIr 1136 (1198)
-+++|+.+.|+||+||||||++..+..-. .| ..+.++||+... ++.+.++ +++++-++ .+.
T Consensus 118 Gl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~--~~~~~l~~~~~~~g~~~~-------~~l 188 (343)
T 1v5w_A 118 GIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENT--FRPDRLRDIADRFNVDHD-------AVL 188 (343)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSC--CCHHHHHHHHHHTTCCHH-------HHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCC--CCHHHHHHHHHHcCCCHH-------HHH
Confidence 58999999999999999999998887642 22 345678887652 3444443 34444322 245
Q ss_pred HHHhcC
Q 000984 1137 ANIAYG 1142 (1198)
Q Consensus 1137 eNI~~g 1142 (1198)
+|+.+.
T Consensus 189 ~~l~~~ 194 (343)
T 1v5w_A 189 DNVLYA 194 (343)
T ss_dssp HTEEEE
T ss_pred hceeEe
Confidence 677654
|
| >1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A* | Back alignment and structure |
|---|
Probab=95.30 E-value=0.0087 Score=60.80 Aligned_cols=26 Identities=35% Similarity=0.465 Sum_probs=23.0
Q ss_pred CCEEEEEcCCCCCHHHHHHHHhcccC
Q 000984 1071 GKTVALVGESGSGKSTVVSLLQRFYD 1096 (1198)
Q Consensus 1071 GekvaIVG~SGSGKSTL~~lL~R~yd 1096 (1198)
|..+.|+|++||||||+.+.|..-+.
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 56899999999999999999987553
|
| >1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A* | Back alignment and structure |
|---|
Probab=95.28 E-value=0.0076 Score=61.52 Aligned_cols=37 Identities=24% Similarity=0.452 Sum_probs=29.4
Q ss_pred CEEEEEcCCCCCHHHHHHHHhcc----cCCCCC----eEEECCcc
Q 000984 1072 KTVALVGESGSGKSTVVSLLQRF----YDPDAG----HITLDGVE 1108 (1198)
Q Consensus 1072 ekvaIVG~SGSGKSTL~~lL~R~----ydp~~G----~I~IDG~d 1108 (1198)
=+|+|||++|+|||||++.|.+- +.|+.| .+.+++..
T Consensus 17 ~ki~ivG~~~vGKSsL~~~l~~~~~~~~~~t~g~~~~~~~~~~~~ 61 (181)
T 1fzq_A 17 VRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSVQSQGFK 61 (181)
T ss_dssp EEEEEEESTTSSHHHHHHHHCCSCCEEEEEETTEEEEEEEETTEE
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCcccCcCCeEEEEEEECCEE
Confidence 47999999999999999999865 456667 56666543
|
| >2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A* | Back alignment and structure |
|---|
Probab=95.27 E-value=0.01 Score=67.00 Aligned_cols=42 Identities=24% Similarity=0.300 Sum_probs=33.7
Q ss_pred EeeCCCEEEEEcCCCCCHHHHHHHHhccc-CC------CCCeEEECCcc
Q 000984 1067 KIRAGKTVALVGESGSGKSTVVSLLQRFY-DP------DAGHITLDGVE 1108 (1198)
Q Consensus 1067 ~I~~GekvaIVG~SGSGKSTL~~lL~R~y-dp------~~G~I~IDG~d 1108 (1198)
-+++|+.+.|.|++|+||||++..+..-. .+ ..+.++||...
T Consensus 103 Gl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~ 151 (324)
T 2z43_A 103 GIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEG 151 (324)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSS
T ss_pred CCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCC
Confidence 58999999999999999999998877643 33 34568887765
|
| >2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B* | Back alignment and structure |
|---|
Probab=95.26 E-value=0.0085 Score=61.29 Aligned_cols=25 Identities=28% Similarity=0.522 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhccCCC
Q 000984 414 TAALVGQSGSGKSTVISLIERFYDP 438 (1198)
Q Consensus 414 ~~~ivG~~GsGKStl~~~l~g~~~~ 438 (1198)
+++|+|++|+|||||++.+.+...+
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~~~~ 28 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKTKKS 28 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC---
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCc
Confidence 6899999999999999999996533
|
| >1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10 | Back alignment and structure |
|---|
Probab=95.25 E-value=0.0069 Score=60.94 Aligned_cols=36 Identities=22% Similarity=0.261 Sum_probs=27.4
Q ss_pred CEEEEEcCCCCCHHHHHHHHhcccCCCC---CeEEECCc
Q 000984 1072 KTVALVGESGSGKSTVVSLLQRFYDPDA---GHITLDGV 1107 (1198)
Q Consensus 1072 ekvaIVG~SGSGKSTL~~lL~R~ydp~~---G~I~IDG~ 1107 (1198)
..++|+|++||||||++..|.+.+.... |.|..|..
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~~~g~~v~~ik~~~~ 43 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVKHHGH 43 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC-
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhHhcCCeeeEEEeCCC
Confidence 4799999999999999999998765432 45665543
|
| >2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A* | Back alignment and structure |
|---|
Probab=95.24 E-value=0.016 Score=61.14 Aligned_cols=51 Identities=18% Similarity=0.211 Sum_probs=33.3
Q ss_pred CCCEEEEeCCCCCCCHHhHHHHHHHHHHHhCCCeEEEEecCc-----------chhhccCEEEEEe
Q 000984 540 DPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRL-----------STVRNADMIAVIH 594 (1198)
Q Consensus 540 ~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~-----------~~~~~~d~i~~l~ 594 (1198)
+++++++||.-- ++.+.-+.+ ..+.. .+.+||++-|+. ..+..||+|.-|.
T Consensus 89 ~~dvViIDEaQ~-l~~~~ve~l-~~L~~--~gi~Vil~Gl~~df~~~~F~~~~~Ll~lAD~V~el~ 150 (223)
T 2b8t_A 89 ETKVIGIDEVQF-FDDRICEVA-NILAE--NGFVVIISGLDKNFKGEPFGPIAKLFTYADKITKLT 150 (223)
T ss_dssp TCCEEEECSGGG-SCTHHHHHH-HHHHH--TTCEEEEECCSBCTTSSBCTTHHHHHHHCSEEEECC
T ss_pred CCCEEEEecCcc-CcHHHHHHH-HHHHh--CCCeEEEEeccccccCCcCCCcHHHHHHhheEeecc
Confidence 589999999964 665432223 22333 378999999932 2345689988875
|
| >3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.24 E-value=0.05 Score=62.11 Aligned_cols=27 Identities=22% Similarity=0.270 Sum_probs=24.0
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHhccC
Q 000984 410 SSGTTAALVGQSGSGKSTVISLIERFY 436 (1198)
Q Consensus 410 ~~g~~~~ivG~~GsGKStl~~~l~g~~ 436 (1198)
.+..-+.|.||+|+|||||++++....
T Consensus 115 ~~~~~vLl~GppGtGKT~la~aia~~~ 141 (357)
T 3d8b_A 115 GPPKGILLFGPPGTGKTLIGKCIASQS 141 (357)
T ss_dssp SCCSEEEEESSTTSSHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHc
Confidence 456789999999999999999999875
|
| >2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A* | Back alignment and structure |
|---|
Probab=95.20 E-value=0.0028 Score=71.26 Aligned_cols=37 Identities=27% Similarity=0.387 Sum_probs=33.8
Q ss_pred ccccceeEEEeCCCE--EEEEcCCCCcHHHHHHHHhccC
Q 000984 400 QIFSGFSISISSGTT--AALVGQSGSGKSTVISLIERFY 436 (1198)
Q Consensus 400 ~~l~~i~l~i~~g~~--~~ivG~~GsGKStl~~~l~g~~ 436 (1198)
.+++.+++.+++|+. ++|+|++||||||+.++|.+.+
T Consensus 10 ~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l 48 (359)
T 2ga8_A 10 DVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQII 48 (359)
T ss_dssp HHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHh
Confidence 477888999999999 9999999999999999999865
|
| >1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A* | Back alignment and structure |
|---|
Probab=95.19 E-value=0.0028 Score=66.72 Aligned_cols=26 Identities=31% Similarity=0.502 Sum_probs=23.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcccCCC
Q 000984 1073 TVALVGESGSGKSTVVSLLQRFYDPD 1098 (1198)
Q Consensus 1073 kvaIVG~SGSGKSTL~~lL~R~ydp~ 1098 (1198)
.|+|+|++||||||+++.|.+.+.+.
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~~ 27 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRAA 27 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhc
Confidence 68999999999999999999988754
|
| >3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=95.14 E-value=0.0098 Score=60.89 Aligned_cols=26 Identities=31% Similarity=0.438 Sum_probs=22.7
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHhccc
Q 000984 1070 AGKTVALVGESGSGKSTVVSLLQRFY 1095 (1198)
Q Consensus 1070 ~GekvaIVG~SGSGKSTL~~lL~R~y 1095 (1198)
++..+.|+|++||||||+.+.|.+-+
T Consensus 4 ~~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 4 NLTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp -CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 46789999999999999999998755
|
| >3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A* | Back alignment and structure |
|---|
Probab=95.11 E-value=0.0091 Score=60.17 Aligned_cols=24 Identities=29% Similarity=0.231 Sum_probs=21.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcccC
Q 000984 1073 TVALVGESGSGKSTVVSLLQRFYD 1096 (1198)
Q Consensus 1073 kvaIVG~SGSGKSTL~~lL~R~yd 1096 (1198)
.++|+|++||||||+++.|...+.
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l~ 26 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKELK 26 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 689999999999999999987653
|
| >2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=95.10 E-value=0.0088 Score=62.38 Aligned_cols=21 Identities=38% Similarity=0.597 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 000984 414 TAALVGQSGSGKSTVISLIER 434 (1198)
Q Consensus 414 ~~~ivG~~GsGKStl~~~l~g 434 (1198)
+++|+|++||||||+++.|.+
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 689999999999999999999
|
| >2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=95.04 E-value=0.03 Score=64.43 Aligned_cols=28 Identities=32% Similarity=0.503 Sum_probs=24.7
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHhccCC
Q 000984 410 SSGTTAALVGQSGSGKSTVISLIERFYD 437 (1198)
Q Consensus 410 ~~g~~~~ivG~~GsGKStl~~~l~g~~~ 437 (1198)
..+..+.|.||+|+|||||++.+.+...
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~~~ 69 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRRLE 69 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHHH
Confidence 4577899999999999999999998763
|
| >2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ... | Back alignment and structure |
|---|
Probab=95.02 E-value=0.016 Score=65.89 Aligned_cols=62 Identities=18% Similarity=0.259 Sum_probs=42.4
Q ss_pred EeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCC-eEEECCcccCCCChHHHHhhcceeccccccc
Q 000984 1067 KIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAG-HITLDGVEIQKLQLKWLRQQMGLVSQEPVLF 1131 (1198)
Q Consensus 1067 ~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G-~I~IDG~dI~~i~l~~LR~~IsiV~Qdp~LF 1131 (1198)
-+++|+.+.|.||+|||||||+..+..-.....| -++||...- .+. ...+++++.+|+..++
T Consensus 57 Gl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~~--~~~-~~a~~lG~~~~~l~i~ 119 (349)
T 2zr9_A 57 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHA--LDP-EYAKKLGVDTDSLLVS 119 (349)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCC--CCH-HHHHHTTCCGGGCEEE
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCC--cCH-HHHHHcCCCHHHeEEe
Confidence 5889999999999999999998777654433344 456665431 222 2356678777765544
|
| >1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A* | Back alignment and structure |
|---|
Probab=95.02 E-value=0.012 Score=59.82 Aligned_cols=26 Identities=23% Similarity=0.344 Sum_probs=23.6
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhccCC
Q 000984 412 GTTAALVGQSGSGKSTVISLIERFYD 437 (1198)
Q Consensus 412 g~~~~ivG~~GsGKStl~~~l~g~~~ 437 (1198)
|..+.|+|++||||||+.+.|...+.
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 57899999999999999999998764
|
| >3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D* | Back alignment and structure |
|---|
Probab=95.00 E-value=0.045 Score=62.72 Aligned_cols=38 Identities=24% Similarity=0.429 Sum_probs=29.9
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECC
Q 000984 410 SSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDG 447 (1198)
Q Consensus 410 ~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g 447 (1198)
.+|..+.|.||+|+|||++++.+...+......+.+++
T Consensus 68 ~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~~~~~~ 105 (368)
T 3uk6_A 68 IAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAG 105 (368)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHHHHCSSCCEEEEEG
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHhcccCCcccccc
Confidence 45678999999999999999999998764434455544
|
| >3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A* | Back alignment and structure |
|---|
Probab=94.98 E-value=0.013 Score=61.20 Aligned_cols=29 Identities=28% Similarity=0.598 Sum_probs=22.9
Q ss_pred cceEEeeCCCEEEEEcCCCCCHHHHHHHHh
Q 000984 1063 DLNLKIRAGKTVALVGESGSGKSTVVSLLQ 1092 (1198)
Q Consensus 1063 ~is~~I~~GekvaIVG~SGSGKSTL~~lL~ 1092 (1198)
+.++.+.+| ..+|+||+|||||||+.+|.
T Consensus 16 ~~~i~f~~~-~~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 16 DTVVEFKEG-INLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp SEEEECCSE-EEEEECCTTSSHHHHHHHHH
T ss_pred ceEEEeCCC-eEEEEcCCCCCHHHHHHHHH
Confidence 344555554 88999999999999998874
|
| >3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A | Back alignment and structure |
|---|
Probab=94.97 E-value=0.0074 Score=70.21 Aligned_cols=42 Identities=29% Similarity=0.422 Sum_probs=37.3
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCC
Q 000984 1070 AGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQK 1111 (1198)
Q Consensus 1070 ~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~~ 1111 (1198)
++..+++||++||||||++..|.+.+.+..++|.+-+.|+..
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r 137 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYR 137 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccc
Confidence 578999999999999999999999999999999987777643
|
| >3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A | Back alignment and structure |
|---|
Probab=94.95 E-value=0.043 Score=60.80 Aligned_cols=24 Identities=29% Similarity=0.306 Sum_probs=21.7
Q ss_pred CEEEEEcCCCCcHHHHHHHHhccC
Q 000984 413 TTAALVGQSGSGKSTVISLIERFY 436 (1198)
Q Consensus 413 ~~~~ivG~~GsGKStl~~~l~g~~ 436 (1198)
..+.+.||+|+|||+|++++...+
T Consensus 37 ~~lLl~GppGtGKT~la~aiA~~l 60 (293)
T 3t15_A 37 LILGIWGGKGQGKSFQCELVFRKM 60 (293)
T ss_dssp SEEEEEECTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 467888999999999999999876
|
| >1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B* | Back alignment and structure |
|---|
Probab=94.93 E-value=0.015 Score=64.27 Aligned_cols=36 Identities=25% Similarity=0.321 Sum_probs=29.4
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCc
Q 000984 1070 AGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGV 1107 (1198)
Q Consensus 1070 ~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~ 1107 (1198)
.|..+.|+|++||||||+++.|..-++ .|.+.||+-
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~~~~--~~~~~Is~D 67 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFEETQ--GNVIVIDND 67 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHTT--TCCEEECTH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC--CCeEEEech
Confidence 456799999999999999999987553 467888863
|
| >1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B* | Back alignment and structure |
|---|
Probab=94.89 E-value=0.015 Score=64.37 Aligned_cols=35 Identities=37% Similarity=0.394 Sum_probs=28.6
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECC
Q 000984 411 SGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDG 447 (1198)
Q Consensus 411 ~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g 447 (1198)
.|..+.|+||+||||||+.+.|...++ .|.+.|++
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~~~~--~~~~~Is~ 66 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFEETQ--GNVIVIDN 66 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHTT--TCCEEECT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC--CCeEEEec
Confidence 456899999999999999999987653 36677765
|
| >1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A | Back alignment and structure |
|---|
Probab=94.89 E-value=0.014 Score=61.48 Aligned_cols=32 Identities=41% Similarity=0.506 Sum_probs=26.3
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECC
Q 000984 1070 AGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDG 1106 (1198)
Q Consensus 1070 ~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG 1106 (1198)
.+-.|+|+|++||||||+++.|.++ |...||.
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~l-----g~~~id~ 34 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFADL-----GINVIDA 34 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHT-----TCEEEEH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHc-----CCEEEEc
Confidence 3457999999999999999999872 6666664
|
| >1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A | Back alignment and structure |
|---|
Probab=94.88 E-value=0.013 Score=60.12 Aligned_cols=26 Identities=27% Similarity=0.342 Sum_probs=23.2
Q ss_pred CCEEEEEcCCCCCHHHHHHHHhcccC
Q 000984 1071 GKTVALVGESGSGKSTVVSLLQRFYD 1096 (1198)
Q Consensus 1071 GekvaIVG~SGSGKSTL~~lL~R~yd 1096 (1198)
|..+.|+|++||||||+++.|..-+.
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 67899999999999999999988553
|
| >1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.87 E-value=0.12 Score=57.98 Aligned_cols=27 Identities=22% Similarity=0.254 Sum_probs=24.0
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHhccC
Q 000984 410 SSGTTAALVGQSGSGKSTVISLIERFY 436 (1198)
Q Consensus 410 ~~g~~~~ivG~~GsGKStl~~~l~g~~ 436 (1198)
.+..-+.|.||+|+|||+|++++.+..
T Consensus 43 ~~~~~iLL~GppGtGKT~la~ala~~~ 69 (322)
T 1xwi_A 43 TPWRGILLFGPPGTGKSYLAKAVATEA 69 (322)
T ss_dssp CCCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCccHHHHHHHHHHHc
Confidence 355679999999999999999999876
|
| >3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A* | Back alignment and structure |
|---|
Probab=94.84 E-value=0.11 Score=57.80 Aligned_cols=26 Identities=23% Similarity=0.406 Sum_probs=22.6
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhccC
Q 000984 411 SGTTAALVGQSGSGKSTVISLIERFY 436 (1198)
Q Consensus 411 ~g~~~~ivG~~GsGKStl~~~l~g~~ 436 (1198)
++..+.|+||+|+|||++++++...+
T Consensus 66 ~~~~vll~G~~GtGKT~la~~la~~l 91 (309)
T 3syl_A 66 PTLHMSFTGNPGTGKTTVALKMAGLL 91 (309)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHH
Confidence 35578999999999999999888766
|
| >3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0 | Back alignment and structure |
|---|
Probab=94.83 E-value=0.022 Score=58.28 Aligned_cols=34 Identities=32% Similarity=0.599 Sum_probs=25.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhc-c----CCCCCC----eEEECC
Q 000984 414 TAALVGQSGSGKSTVISLIER-F----YDPQAG----EVLIDG 447 (1198)
Q Consensus 414 ~~~ivG~~GsGKStl~~~l~g-~----~~~~~G----~i~i~g 447 (1198)
+++|+|++|+|||||++.+.+ . +.|+.| .+.++|
T Consensus 22 ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~~~~~~~~~~~~ 64 (184)
T 3ihw_A 22 KVGIVGNLSSGKSALVHRYLTGTYVQEESPEGGRFKKEIVVDG 64 (184)
T ss_dssp EEEEECCTTSCHHHHHHHHHHSSCCCCCCTTCEEEEEEEEETT
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCcCCCcceEEEEEEECC
Confidence 789999999999999976664 3 456655 444444
|
| >2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A* | Back alignment and structure |
|---|
Probab=94.81 E-value=0.014 Score=60.59 Aligned_cols=27 Identities=22% Similarity=0.241 Sum_probs=24.6
Q ss_pred eCCCEEEEEcCCCCCHHHHHHHHhccc
Q 000984 1069 RAGKTVALVGESGSGKSTVVSLLQRFY 1095 (1198)
Q Consensus 1069 ~~GekvaIVG~SGSGKSTL~~lL~R~y 1095 (1198)
.+|..|+|+|++||||||+++.|...+
T Consensus 2 ~~~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 2 SRGALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 368899999999999999999999876
|
| >3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=94.76 E-value=0.012 Score=60.29 Aligned_cols=27 Identities=26% Similarity=0.434 Sum_probs=23.4
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHhccC
Q 000984 410 SSGTTAALVGQSGSGKSTVISLIERFY 436 (1198)
Q Consensus 410 ~~g~~~~ivG~~GsGKStl~~~l~g~~ 436 (1198)
.+|.+++|+|++||||||+.+.|...+
T Consensus 2 ~~g~~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 2 DVGQAVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 357899999999999999999998654
|
| >3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A | Back alignment and structure |
|---|
Probab=94.73 E-value=0.014 Score=58.74 Aligned_cols=19 Identities=42% Similarity=0.679 Sum_probs=18.2
Q ss_pred EEEEEcCCCCCHHHHHHHH
Q 000984 1073 TVALVGESGSGKSTVVSLL 1091 (1198)
Q Consensus 1073 kvaIVG~SGSGKSTL~~lL 1091 (1198)
.++|+|++||||||+++.|
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 6899999999999999999
|
| >1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=94.72 E-value=0.015 Score=62.29 Aligned_cols=26 Identities=31% Similarity=0.437 Sum_probs=23.4
Q ss_pred eeCCCEEEEEcCCCCCHHHHHHHHhc
Q 000984 1068 IRAGKTVALVGESGSGKSTVVSLLQR 1093 (1198)
Q Consensus 1068 I~~GekvaIVG~SGSGKSTL~~lL~R 1093 (1198)
-++|.+++|+|++||||||+.+.|.+
T Consensus 13 ~~~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 13 KMKTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp -CCCCEEEEECSSCSSHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHH
Confidence 35788999999999999999999986
|
| >2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=94.71 E-value=0.037 Score=57.87 Aligned_cols=23 Identities=22% Similarity=0.354 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhccC
Q 000984 414 TAALVGQSGSGKSTVISLIERFY 436 (1198)
Q Consensus 414 ~~~ivG~~GsGKStl~~~l~g~~ 436 (1198)
.+.|.||+|+||||+++.+...+
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~~~ 62 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALARDL 62 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 49999999999999999998765
|
| >1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A | Back alignment and structure |
|---|
Probab=94.69 E-value=0.013 Score=59.97 Aligned_cols=23 Identities=35% Similarity=0.540 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhccC
Q 000984 414 TAALVGQSGSGKSTVISLIERFY 436 (1198)
Q Consensus 414 ~~~ivG~~GsGKStl~~~l~g~~ 436 (1198)
.+.|+|||||||+||++.|+...
T Consensus 3 pIVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 3 PIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHhC
Confidence 37899999999999999998765
|
| >2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.66 E-value=0.0069 Score=62.77 Aligned_cols=30 Identities=33% Similarity=0.488 Sum_probs=25.9
Q ss_pred EEeeCCCEEEEEcCCCCCHHHHHHHHhccc
Q 000984 1066 LKIRAGKTVALVGESGSGKSTVVSLLQRFY 1095 (1198)
Q Consensus 1066 ~~I~~GekvaIVG~SGSGKSTL~~lL~R~y 1095 (1198)
.+++++..|+|+|++||||||+.+.|.+.+
T Consensus 7 ~~~~~~~~I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 7 EDLRKCKIIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp HHHHHSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred cccCCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 345677899999999999999999998765
|
| >2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus} | Back alignment and structure |
|---|
Probab=94.65 E-value=0.014 Score=60.13 Aligned_cols=27 Identities=19% Similarity=0.301 Sum_probs=24.0
Q ss_pred eCCCEEEEEcCCCCCHHHHHHHHhccc
Q 000984 1069 RAGKTVALVGESGSGKSTVVSLLQRFY 1095 (1198)
Q Consensus 1069 ~~GekvaIVG~SGSGKSTL~~lL~R~y 1095 (1198)
++|..+.|+|++||||||+++.|..-+
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHc
Confidence 467889999999999999999998755
|
| >3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A | Back alignment and structure |
|---|
Probab=94.63 E-value=0.011 Score=60.24 Aligned_cols=27 Identities=26% Similarity=0.236 Sum_probs=23.8
Q ss_pred eCCCEEEEEcCCCCCHHHHHHHHhccc
Q 000984 1069 RAGKTVALVGESGSGKSTVVSLLQRFY 1095 (1198)
Q Consensus 1069 ~~GekvaIVG~SGSGKSTL~~lL~R~y 1095 (1198)
..+..|.|+|++||||||+++.|..-+
T Consensus 9 ~~~~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred ccCCeEEEEeCCCCCHHHHHHHHHHHh
Confidence 467889999999999999999998654
|
| >3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.62 E-value=0.014 Score=60.46 Aligned_cols=22 Identities=50% Similarity=0.693 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhcc
Q 000984 1073 TVALVGESGSGKSTVVSLLQRF 1094 (1198)
Q Consensus 1073 kvaIVG~SGSGKSTL~~lL~R~ 1094 (1198)
+|+|||++|+|||||++.|.+.
T Consensus 25 ki~vvG~~~vGKSsLi~~l~~~ 46 (195)
T 3cbq_A 25 KVMLVGESGVGKSTLAGTFGGL 46 (195)
T ss_dssp EEEEECSTTSSHHHHHHHTCCE
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 7999999999999999999643
|
| >4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A | Back alignment and structure |
|---|
Probab=94.60 E-value=0.015 Score=67.39 Aligned_cols=36 Identities=19% Similarity=0.230 Sum_probs=31.5
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEEC
Q 000984 411 SGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLID 446 (1198)
Q Consensus 411 ~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~ 446 (1198)
.+..++|+|++||||||+++.|++.+.+..+.|.+-
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~~~~~~~~~~~~ 69 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLREYMQGSRVIII 69 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHHHHHCCCEEEEE
Confidence 567899999999999999999998887888888763
|
| >1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=94.54 E-value=0.024 Score=64.31 Aligned_cols=36 Identities=28% Similarity=0.513 Sum_probs=29.7
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhc-----------cCCCCCCeEEECC
Q 000984 412 GTTAALVGQSGSGKSTVISLIER-----------FYDPQAGEVLIDG 447 (1198)
Q Consensus 412 g~~~~ivG~~GsGKStl~~~l~g-----------~~~~~~G~i~i~g 447 (1198)
|-+++|||.+|+|||||++.|.+ -.+|..|.+.+++
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~ 48 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPD 48 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCC
Confidence 45799999999999999999998 3356677777665
|
| >2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A* | Back alignment and structure |
|---|
Probab=94.51 E-value=0.034 Score=55.98 Aligned_cols=25 Identities=20% Similarity=0.448 Sum_probs=22.0
Q ss_pred eCCCEEEEEcCCCCCHHHHHHHHhc
Q 000984 1069 RAGKTVALVGESGSGKSTVVSLLQR 1093 (1198)
Q Consensus 1069 ~~GekvaIVG~SGSGKSTL~~lL~R 1093 (1198)
++.-+|+++|++|+|||||++.|.+
T Consensus 6 ~~~~~i~v~G~~~~GKssl~~~l~~ 30 (178)
T 2lkc_A 6 ERPPVVTIMGHVDHGKTTLLDAIRH 30 (178)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhC
Confidence 3456899999999999999999975
|
| >3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A* | Back alignment and structure |
|---|
Probab=94.51 E-value=0.017 Score=58.18 Aligned_cols=23 Identities=26% Similarity=0.151 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhccC
Q 000984 414 TAALVGQSGSGKSTVISLIERFY 436 (1198)
Q Consensus 414 ~~~ivG~~GsGKStl~~~l~g~~ 436 (1198)
+++|+|++||||||+.+.|...+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999998765
|
| >2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A | Back alignment and structure |
|---|
Probab=94.49 E-value=0.016 Score=59.82 Aligned_cols=27 Identities=30% Similarity=0.482 Sum_probs=24.1
Q ss_pred eCCCEEEEEcCCCCCHHHHHHHHhccc
Q 000984 1069 RAGKTVALVGESGSGKSTVVSLLQRFY 1095 (1198)
Q Consensus 1069 ~~GekvaIVG~SGSGKSTL~~lL~R~y 1095 (1198)
.++..++|+|++||||||+.+.|.+-+
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 7 KKTNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp TTSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 467899999999999999999998755
|
| >2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A | Back alignment and structure |
|---|
Probab=94.42 E-value=0.0098 Score=70.46 Aligned_cols=59 Identities=7% Similarity=0.151 Sum_probs=45.6
Q ss_pred cccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCC-eEEECCcccCCCChHHHHhh
Q 000984 1059 QVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAG-HITLDGVEIQKLQLKWLRQQ 1120 (1198)
Q Consensus 1059 ~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G-~I~IDG~dI~~i~l~~LR~~ 1120 (1198)
+.|+++..-+++|+.+.|.||+|+||||++..+.+-.-+..| .+.+-+.+ .+.+.++++
T Consensus 191 ~~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~E---~s~~~l~~r 250 (454)
T 2r6a_A 191 TELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSLE---MSAQQLVMR 250 (454)
T ss_dssp HHHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEESS---SCHHHHHHH
T ss_pred HHHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEECC---CCHHHHHHH
Confidence 368888888999999999999999999999999887766445 66665443 344555544
|
| >1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1 | Back alignment and structure |
|---|
Probab=94.42 E-value=0.19 Score=57.29 Aligned_cols=29 Identities=24% Similarity=0.327 Sum_probs=25.3
Q ss_pred EEeCCCEEEEEcCCCCcHHHHHHHHhccC
Q 000984 408 SISSGTTAALVGQSGSGKSTVISLIERFY 436 (1198)
Q Consensus 408 ~i~~g~~~~ivG~~GsGKStl~~~l~g~~ 436 (1198)
-+++|+.+.|.||+|||||||+..++...
T Consensus 70 Gl~~G~li~I~G~pGsGKTtlal~la~~~ 98 (366)
T 1xp8_A 70 GIPRGRITEIYGPESGGKTTLALAIVAQA 98 (366)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CccCCcEEEEEcCCCCChHHHHHHHHHHH
Confidence 37899999999999999999998777544
|
| >1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=94.39 E-value=0.018 Score=59.83 Aligned_cols=31 Identities=35% Similarity=0.536 Sum_probs=26.1
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECC
Q 000984 412 GTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDG 447 (1198)
Q Consensus 412 g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g 447 (1198)
..+++|+|++||||||+.+.|... |-..+|.
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~~-----g~~~id~ 38 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRSW-----GYPVLDL 38 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHT-----TCCEEEH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHC-----CCEEEcc
Confidence 357999999999999999999985 6666654
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| 1198 | ||||
| d2hyda1 | 255 | c.37.1.12 (A:324-578) Putative multidrug export AT | 2e-95 | |
| d2hyda1 | 255 | c.37.1.12 (A:324-578) Putative multidrug export AT | 2e-41 | |
| d3b60a1 | 253 | c.37.1.12 (A:329-581) Multidrug resistance ABC tra | 8e-92 | |
| d3b60a1 | 253 | c.37.1.12 (A:329-581) Multidrug resistance ABC tra | 3e-41 | |
| d2pmka1 | 241 | c.37.1.12 (A:467-707) Haemolysin B ATP-binding pro | 4e-86 | |
| d2pmka1 | 241 | c.37.1.12 (A:467-707) Haemolysin B ATP-binding pro | 8e-36 | |
| d1jj7a_ | 251 | c.37.1.12 (A:) Peptide transporter Tap1, C-termina | 2e-85 | |
| d1jj7a_ | 251 | c.37.1.12 (A:) Peptide transporter Tap1, C-termina | 3e-44 | |
| d1mv5a_ | 242 | c.37.1.12 (A:) Multidrug resistance ABC transporte | 5e-82 | |
| d1mv5a_ | 242 | c.37.1.12 (A:) Multidrug resistance ABC transporte | 6e-36 | |
| d1r0wa_ | 281 | c.37.1.12 (A:) Cystic fibrosis transmembrane condu | 3e-75 | |
| d1r0wa_ | 281 | c.37.1.12 (A:) Cystic fibrosis transmembrane condu | 1e-28 | |
| d1l2ta_ | 230 | c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jann | 7e-50 | |
| d1l2ta_ | 230 | c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jann | 5e-22 | |
| d1l7vc_ | 231 | c.37.1.12 (C:) ABC transporter involved in vitamin | 4e-44 | |
| d1l7vc_ | 231 | c.37.1.12 (C:) ABC transporter involved in vitamin | 2e-18 | |
| d1v43a3 | 239 | c.37.1.12 (A:7-245) Hypothetical protein PH0022, N | 4e-44 | |
| d1v43a3 | 239 | c.37.1.12 (A:7-245) Hypothetical protein PH0022, N | 8e-21 | |
| d1b0ua_ | 258 | c.37.1.12 (A:) ATP-binding subunit of the histidin | 3e-43 | |
| d1b0ua_ | 258 | c.37.1.12 (A:) ATP-binding subunit of the histidin | 3e-21 | |
| d3dhwc1 | 240 | c.37.1.12 (C:1-240) Methionine import ATP-binding | 9e-43 | |
| d3dhwc1 | 240 | c.37.1.12 (C:1-240) Methionine import ATP-binding | 1e-20 | |
| d1sgwa_ | 200 | c.37.1.12 (A:) Putative ABC transporter PF0895 {Py | 1e-38 | |
| d1sgwa_ | 200 | c.37.1.12 (A:) Putative ABC transporter PF0895 {Py | 7e-20 | |
| d1g2912 | 240 | c.37.1.12 (1:1-240) Maltose transport protein MalK | 1e-37 | |
| d1g2912 | 240 | c.37.1.12 (1:1-240) Maltose transport protein MalK | 8e-15 | |
| d1vpla_ | 238 | c.37.1.12 (A:) Putative ABC transporter TM0544 {Th | 2e-36 | |
| d1vpla_ | 238 | c.37.1.12 (A:) Putative ABC transporter TM0544 {Th | 6e-16 | |
| d2awna2 | 232 | c.37.1.12 (A:4-235) Maltose transport protein MalK | 2e-36 | |
| d2awna2 | 232 | c.37.1.12 (A:4-235) Maltose transport protein MalK | 5e-16 | |
| d1ji0a_ | 240 | c.37.1.12 (A:) Branched chain aminoacid ABC transp | 3e-36 | |
| d1ji0a_ | 240 | c.37.1.12 (A:) Branched chain aminoacid ABC transp | 3e-13 | |
| d1g6ha_ | 254 | c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jann | 9e-36 | |
| d1g6ha_ | 254 | c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jann | 1e-16 | |
| d2onka1 | 240 | c.37.1.12 (A:1-240) Molybdate/tungstate import ATP | 7e-33 | |
| d2onka1 | 240 | c.37.1.12 (A:1-240) Molybdate/tungstate import ATP | 3e-13 | |
| d3d31a2 | 229 | c.37.1.12 (A:1-229) Sulfate/molybdate ABC transpor | 2e-31 | |
| d3d31a2 | 229 | c.37.1.12 (A:1-229) Sulfate/molybdate ABC transpor | 1e-15 | |
| d1oxxk2 | 242 | c.37.1.12 (K:1-242) Glucose transport protein GlcV | 3e-31 | |
| d1oxxk2 | 242 | c.37.1.12 (K:1-242) Glucose transport protein GlcV | 4e-17 | |
| d1ye8a1 | 178 | c.37.1.11 (A:1-178) Hypothetical kinase-like prote | 4e-24 | |
| d1ye8a1 | 178 | c.37.1.11 (A:1-178) Hypothetical kinase-like prote | 9e-12 | |
| d2hyda2 | 323 | f.37.1.1 (A:1-323) Putative multidrug export ATP-b | 2e-16 | |
| d2hyda2 | 323 | f.37.1.1 (A:1-323) Putative multidrug export ATP-b | 4e-10 | |
| d3b60a2 | 319 | f.37.1.1 (A:10-328) Multidrug resistance ABC trans | 1e-15 | |
| d3b60a2 | 319 | f.37.1.1 (A:10-328) Multidrug resistance ABC trans | 3e-11 | |
| g1f2t.1 | 292 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 2e-10 | |
| g1f2t.1 | 292 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 8e-04 | |
| g1f2t.1 | 292 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 0.004 | |
| g1ii8.1 | 369 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 3e-10 | |
| d2i3ba1 | 189 | c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 | 2e-07 | |
| d2i3ba1 | 189 | c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 | 4e-04 | |
| d1w1wa_ | 427 | c.37.1.12 (A:) Smc head domain {Baker's yeast (Sac | 8e-04 | |
| d1zp6a1 | 176 | c.37.1.25 (A:6-181) Hypothetical protein Atu3015 { | 0.002 |
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 255 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Score = 302 bits (776), Expect = 2e-95
Identities = 127/246 (51%), Positives = 169/246 (68%), Gaps = 2/246 (0%)
Query: 377 LDDIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFY 436
++ +G I++ V F Y I ++SI G T A VG SG GKST+I+LI RFY
Sbjct: 10 IEIKQGRIDIDHVSFQYNDN-EAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFY 68
Query: 437 DPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVAT 496
D +G++LIDG N+K+F +R +IGLV Q+ +LF+ ++K+NI G+ AT EE+ A
Sbjct: 69 DVTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLGRPTATDEEVVEAA 128
Query: 497 ELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAE 556
++ANA FI LPQG DT VGE G +LSGGQKQR++IAR L +P IL+LDEATSALD E
Sbjct: 129 KMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLE 188
Query: 557 SEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVEDPEGAYS 616
SE ++QEALD + +RTT+IVAHRLST+ +AD I VI G IVE GTH +L+ +GAY
Sbjct: 189 SESIIQEALDVLSKDRTTLIVAHRLSTITHADKIVVIENGHIVETGTHRELIAK-QGAYE 247
Query: 617 QLIRLQ 622
L +Q
Sbjct: 248 HLYSIQ 253
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 255 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Score = 151 bits (382), Expect = 2e-41
Identities = 61/135 (45%), Positives = 90/135 (66%), Gaps = 2/135 (1%)
Query: 1036 LEDVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFY 1095
+E +G I++ HVSF+Y + + +D+NL I G+TVA VG SG GKST+++L+ RFY
Sbjct: 10 IEIKQGRIDIDHVSFQYNDN-EAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFY 68
Query: 1096 DPDAGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAA 1155
D +G I +DG I+ LR Q+GLV Q+ +LF+DT++ NI G+ AT+ E+ A
Sbjct: 69 DVTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLGR-PTATDEEVVEA 127
Query: 1156 SEMANAHKFICSLQQ 1170
++MANAH FI +L Q
Sbjct: 128 AKMANAHDFIMNLPQ 142
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 253 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Score = 293 bits (751), Expect = 8e-92
Identities = 124/253 (49%), Positives = 176/253 (69%), Gaps = 3/253 (1%)
Query: 371 DTKGKILDDIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVIS 430
D +++D GD+E R+V F+YP R ++ I +G T ALVG+SGSGKST+ S
Sbjct: 1 DEGKRVIDRATGDLEFRNVTFTYPGR-EVPALRNINLKIPAGKTVALVGRSGSGKSTIAS 59
Query: 431 LIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATT- 489
LI RFYD G +L+DG +L+E+ L +R ++ LVSQ LF ++ +NIAY + + +
Sbjct: 60 LITRFYDIDEGHILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEEYSR 119
Query: 490 EEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEA 549
E+I A +A A FI+K+ G+DT++GE+G LSGGQ+QRIAIARA+L+D IL+LDEA
Sbjct: 120 EQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEA 179
Query: 550 TSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVE 609
TSALD ESE+ +Q ALD + NRT++++AHRLST+ AD I V+ G IVE+GTHS+L+
Sbjct: 180 TSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEQADEIVVVEDGIIVERGTHSELLA 239
Query: 610 DPEGAYSQLIRLQ 622
G Y+QL ++Q
Sbjct: 240 QH-GVYAQLHKMQ 251
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 253 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Score = 150 bits (380), Expect = 3e-41
Identities = 67/141 (47%), Positives = 93/141 (65%), Gaps = 1/141 (0%)
Query: 1030 DESGTILEDVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVS 1089
DE +++ G++E +V+F YP R +V R++NLKI AGKTVALVG SGSGKST+ S
Sbjct: 1 DEGKRVIDRATGDLEFRNVTFTYPGR-EVPALRNINLKIPAGKTVALVGRSGSGKSTIAS 59
Query: 1090 LLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDATE 1149
L+ RFYD D GHI +DG ++++ L LR Q+ LVSQ LFNDT+ NIAY + + +
Sbjct: 60 LITRFYDIDEGHILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEEYSR 119
Query: 1150 AEIQAASEMANAHKFICSLQQ 1170
+I+ A+ MA A FI +
Sbjct: 120 EQIEEAARMAYAMDFINKMDN 140
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} Length = 241 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Score = 277 bits (709), Expect = 4e-86
Identities = 116/240 (48%), Positives = 162/240 (67%), Gaps = 1/240 (0%)
Query: 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGE 442
DI R++ F Y + I ++SI G +VG+SGSGKST+ LI+RFY P+ G+
Sbjct: 1 DITFRNIRFRYKPD-SPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQ 59
Query: 443 VLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAA 502
VLIDG +L W+R+++G+V Q+ VL SI DNI+ + E++ A +LA A
Sbjct: 60 VLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAH 119
Query: 503 KFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQ 562
FI +L +G +T+VGE G LSGGQ+QRIAIARA++ +P+IL+ DEATSALD ESE V+
Sbjct: 120 DFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIM 179
Query: 563 EALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVEDPEGAYSQLIRLQ 622
+ +I RT +I+AHRLSTV+NAD I V+ +GKIVE+G H +L+ +PE YS L +LQ
Sbjct: 180 RNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQLQ 239
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} Length = 241 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Score = 134 bits (338), Expect = 8e-36
Identities = 45/129 (34%), Positives = 77/129 (59%), Gaps = 2/129 (1%)
Query: 1042 EIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGH 1101
+I ++ F+Y + ++NL I+ G+ + +VG SGSGKST+ L+QRFY P+ G
Sbjct: 1 DITFRNIRFRYKPD-SPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQ 59
Query: 1102 ITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANA 1161
+ +DG ++ WLR+Q+G+V Q+ VL N +I NI+ + ++ A+++A A
Sbjct: 60 VLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLAN-PGMSVEKVIYAAKLAGA 118
Query: 1162 HKFICSLQQ 1170
H FI L++
Sbjct: 119 HDFISELRE 127
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 275 bits (705), Expect = 2e-85
Identities = 99/244 (40%), Positives = 154/244 (63%), Gaps = 4/244 (1%)
Query: 380 IRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQ 439
+ G ++ +DV F+YP RP+ + G + ++ G ALVG +GSGKSTV +L++ Y P
Sbjct: 8 LEGLVQFQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPT 67
Query: 440 AGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYG-KDDATTEEIRVATEL 498
G++L+DG L +++ +++ +++ V QEP +F S+++NIAYG T EEI A
Sbjct: 68 GGQLLLDGKPLPQYEHRYLHRQVAAVGQEPQVFGRSLQENIAYGLTQKPTMEEITAAAVK 127
Query: 499 ANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESE 558
+ A FI LPQG DT V E G+QLSGGQ+Q +A+ARA+++ P +L+LD+ATSALDA S+
Sbjct: 128 SGAHSFISGLPQGYDTEVDEAGSQLSGGQRQAVALARALIRKPCVLILDDATSALDANSQ 187
Query: 559 KVVQEALDRIM--VNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVEDPEGAYS 616
V++ L +R+ +++ LS V AD I + G I E GTH +L+E G Y
Sbjct: 188 LQVEQLLYESPERYSRSVLLITQHLSLVEQADHILFLEGGAIREGGTHQQLMEKK-GCYW 246
Query: 617 QLIR 620
+++
Sbjct: 247 AMVQ 250
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 158 bits (401), Expect = 3e-44
Identities = 57/140 (40%), Positives = 83/140 (59%)
Query: 1037 EDVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYD 1096
++G ++ VSF YP+RPDV V + L +R G+ ALVG +GSGKSTV +LLQ Y
Sbjct: 6 LHLEGLVQFQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQ 65
Query: 1097 PDAGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAAS 1156
P G + LDG + + + ++L +Q+ V QEP +F +++ NIAYG T EI AA+
Sbjct: 66 PTGGQLLLDGKPLPQYEHRYLHRQVAAVGQEPQVFGRSLQENIAYGLTQKPTMEEITAAA 125
Query: 1157 EMANAHKFICSLQQVRTSRL 1176
+ AH FI L Q + +
Sbjct: 126 VKSGAHSFISGLPQGYDTEV 145
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Score = 265 bits (680), Expect = 5e-82
Identities = 106/240 (44%), Positives = 157/240 (65%), Gaps = 4/240 (1%)
Query: 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 443
+ R V F+Y +EQI S + A G SG GKST+ SL+ERFY P AGE+
Sbjct: 2 LSARHVDFAYD--DSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEI 59
Query: 444 LIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYG-KDDATTEEIRVATELANAA 502
IDG + L+ R +IG VSQ+ + G+I++N+ YG + D T E++ +LA A
Sbjct: 60 TIDGQPIDNISLENWRSQIGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFAR 119
Query: 503 KFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQ 562
F++ +P ++T VGE G ++SGGQ+QR+AIARA L++P+IL+LDEAT++LD+ESE +VQ
Sbjct: 120 SFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQ 179
Query: 563 EALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVEDPEGAYSQLIRLQ 622
+ALD +M RTT+++AHRLST+ +AD I I +G+I G H++LV Y++ + Q
Sbjct: 180 KALDSLMKGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVAT-HPLYAKYVSEQ 238
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Score = 134 bits (339), Expect = 6e-36
Identities = 48/124 (38%), Positives = 70/124 (56%), Gaps = 2/124 (1%)
Query: 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHI 1102
+ HV F Y Q+ RD++ + + +A G SG GKST+ SLL+RFY P AG I
Sbjct: 2 LSARHVDFAYDDSE--QILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEI 59
Query: 1103 TLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAH 1162
T+DG I + L+ R Q+G VSQ+ + TIR N+ YG GD T+ ++ ++A A
Sbjct: 60 TIDGQPIDNISLENWRSQIGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFAR 119
Query: 1163 KFIC 1166
F+
Sbjct: 120 SFVE 123
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 248 bits (635), Expect = 3e-75
Identities = 77/300 (25%), Positives = 138/300 (46%), Gaps = 28/300 (9%)
Query: 351 QAAAFKMFETINRKPEIDAYDTKGKILDDIRGDIELRDVYFSYPARPNEQIFSGFSISIS 410
A + F + K + D K ++ +V FS+ + +++I
Sbjct: 9 TAFWEEGFGELLEKVQQSNGDRKHSSDEN--------NVSFSHLCLVGNPVLKNINLNIE 60
Query: 411 SGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPV 470
G A+ G +GSGK++++ LI + G + G ++ SQ
Sbjct: 61 KGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSG-------------RVSFCSQFSW 107
Query: 471 LFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQR 530
+ G+IK+NI +G + + + I K + +T++GE G LSGGQ+ R
Sbjct: 108 IMPGTIKENIIFG-VSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRAR 166
Query: 531 IAIARAILKDPRILLLDEATSALDAES-EKVVQEALDRIMVNRTTVIVAHRLSTVRNADM 589
I++ARA+ KD + LLD LD + E+V + + ++M N+T ++V ++ +R AD
Sbjct: 167 ISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTSKMEHLRKADK 226
Query: 590 IAVIHRGKIVEKGTHSKLVEDPEGAYSQLIRLQEANKESEQTIDGQRKSEISMESLRHSS 649
I ++H+G GT S+L S+L+ ++ +E +R+S I E+LR S
Sbjct: 227 ILILHQGSSYFYGTFSELQSLRPDFSSKLMGYDTFDQFTE-----ERRSSILTETLRRFS 281
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 114 bits (287), Expect = 1e-28
Identities = 33/179 (18%), Positives = 67/179 (37%), Gaps = 33/179 (18%)
Query: 992 TAIGISQSSSFSSDSNKAKSAAASIFAIIDRESKIDPSDESGTILEDVKGEIELHHVSFK 1051
T I + ++F + F + + + D + E+ +VSF
Sbjct: 1 TGIIMENVTAFWEE----------GFGELLEKVQQSNGDRKHSSDEN--------NVSFS 42
Query: 1052 YPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQK 1111
+ V +++NL I G+ +A+ G +GSGK++++ L+ + G I G
Sbjct: 43 HLCLVGNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSG----- 97
Query: 1112 LQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQ 1170
++ SQ + TI+ NI + G E ++ + + I +
Sbjct: 98 --------RVSFCSQFSWIMPGTIKENIIF--GVSYDEYRYKSVVKACQLQQDITKFAE 146
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 174 bits (442), Expect = 7e-50
Identities = 62/228 (27%), Positives = 109/228 (47%), Gaps = 9/228 (3%)
Query: 384 IELRDVYFSYPARPNE-QIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGE 442
I+L++V +Y +++I G +++G SGSGKST++++I P GE
Sbjct: 2 IKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGE 61
Query: 443 VLIDGINL----KEFQLQWIRKKIGLVSQEPVLFTG-SIKDNIAYGKDDATTEEIRVATE 497
V ID I + + R KIG V Q+ L + +N+ + E
Sbjct: 62 VYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGE-E 120
Query: 498 LANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAES 557
A K+ + + QLSGGQ+QR+AIARA+ +P I+L D+ T ALD+++
Sbjct: 121 RRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTGALDSKT 180
Query: 558 EKVVQEALDRI--MVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGT 603
+ + + L ++ +T V+V H ++ R + I + G++ +
Sbjct: 181 GEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVEREEK 228
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 93.7 bits (233), Expect = 5e-22
Identities = 29/106 (27%), Positives = 54/106 (50%), Gaps = 6/106 (5%)
Query: 1043 IELHHVSFKYPSR-PDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGH 1101
I+L +V+ Y + +++NL I+ G+ V+++G SGSGKST+++++ P G
Sbjct: 2 IKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGE 61
Query: 1102 ITLDGVEIQKL----QLKWLRQQMGLVSQEPVLFND-TIRANIAYG 1142
+ +D ++ L K R ++G V Q+ L T N+
Sbjct: 62 VYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELP 107
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} Length = 231 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Score = 157 bits (399), Expect = 4e-44
Identities = 53/239 (22%), Positives = 102/239 (42%), Gaps = 28/239 (11%)
Query: 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 443
++L+DV S S + +G LVG +G+GKST+++ + G +
Sbjct: 4 MQLQDVAEST-------RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGKGSI 55
Query: 444 LIDGINLKEFQLQWIRKKIGLVSQEP-VLFTGSIKDNIAYGKDDATTEEIRVATELANAA 502
G L+ + + +SQ+ F + + + D T E+ ++A A
Sbjct: 56 QFAGQPLEAWSATKLALHRAYLSQQQTPPFATPVWHYLTLHQHDKTRTELL--NDVAGAL 113
Query: 503 KFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILK-------DPRILLLDEATSALDA 555
+D +G QLSGG+ QR+ +A +L+ ++LLLDE ++LD
Sbjct: 114 --------ALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDV 165
Query: 556 ESEKVVQEALDRIMV-NRTTVIVAHRLSTV-RNADMIAVIHRGKIVEKGTHSKLVEDPE 612
+ + + L + V+ +H L+ R+A ++ GK++ G +++ P
Sbjct: 166 AQQSALDKILSALCQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVLTPPN 224
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} Length = 231 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Score = 83.4 bits (206), Expect = 2e-18
Identities = 27/155 (17%), Positives = 56/155 (36%), Gaps = 18/155 (11%)
Query: 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHI 1102
++L V+ L+ ++RAG+ + LVG +G+GKST+++ + G I
Sbjct: 4 MQLQDVAEST-------RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGKGSI 55
Query: 1103 TLDGVEIQKLQLKWLRQQMGLVSQEP-VLFNDTIRANIAYGKGGDATEAEIQAASEMAN- 1160
G ++ L +SQ+ F + + + + +
Sbjct: 56 QFAGQPLEAWSATKLALHRAYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALAL 115
Query: 1161 ---AHKFICSL-----QQVRTSRLLLVMIPWLESE 1187
+ L Q+VR + ++L + P
Sbjct: 116 DDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPA 150
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Length = 239 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Score = 158 bits (400), Expect = 4e-44
Identities = 61/245 (24%), Positives = 118/245 (48%), Gaps = 26/245 (10%)
Query: 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGE 442
+++L ++ + N + +++I G L+G SG GK+T + +I +P G
Sbjct: 6 EVKLENLTKRFG---NFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGR 62
Query: 443 VLIDGINLKEFQLQWIRKKIGLVSQEPVLFTG-SIKDNIAYG------KDDATTEEIRVA 495
+ + L + I +V Q ++ ++ +NIA+ D + +R A
Sbjct: 63 IYFGDRD--VTYLPPKDRNISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWA 120
Query: 496 TELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDA 555
EL + +++ P QLSGGQ+QR+A+ARAI+ +P +LL+DE S LDA
Sbjct: 121 AELLQIEELLNRYP-----------AQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDA 169
Query: 556 ESEKVVQEALDRI--MVNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVEDPE 612
+ ++ + ++ + TT+ V H D IAV++RG++++ G+ +++ P
Sbjct: 170 KLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYLRPN 229
Query: 613 GAYSQ 617
+
Sbjct: 230 SVFVA 234
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Length = 239 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Score = 90.6 bits (225), Expect = 8e-21
Identities = 26/117 (22%), Positives = 54/117 (46%), Gaps = 9/117 (7%)
Query: 1042 EIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGH 1101
E++L +++ ++ + LNL I+ G+ + L+G SG GK+T + ++ +P G
Sbjct: 6 EVKLENLTKRFG---NFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGR 62
Query: 1102 ITLDGVEIQKLQLKWLRQQMGLVSQEPVLFND-TIRANIAYG---KGGDATEAEIQA 1154
I ++ L + + +V Q ++ T+ NIA+ K E + +
Sbjct: 63 IYFGDRDVT--YLPPKDRNISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRV 117
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Score = 156 bits (396), Expect = 3e-43
Identities = 65/258 (25%), Positives = 121/258 (46%), Gaps = 38/258 (14%)
Query: 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 443
+ + D++ Y ++ G S+ +G +++G SGSGKST + I P G +
Sbjct: 3 LHVIDLHKRYGGH---EVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAI 59
Query: 444 LIDGINL-------------KEFQLQWIRKKIGLVSQEPVLFTG-SIKDNIAYG------ 483
+++G N+ + QL+ +R ++ +V Q L++ ++ +N+
Sbjct: 60 IVNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLG 119
Query: 484 --KDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDP 541
K DA ++ ++ + K P LSGGQ+QR++IARA+ +P
Sbjct: 120 LSKHDARERALKYLAKVGIDERAQGKYP-----------VHLSGGQQQRVSIARALAMEP 168
Query: 542 RILLLDEATSALDA-ESEKVVQEALDRIMVNRTTVIVAHRLSTVRN-ADMIAVIHRGKIV 599
+LL DE TSALD +V++ +T V+V H + R+ + + +H+GKI
Sbjct: 169 DVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIE 228
Query: 600 EKGTHSKLVEDPEGAYSQ 617
E+G ++ +P+ Q
Sbjct: 229 EEGDPEQVFGNPQSPRLQ 246
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Score = 92.6 bits (230), Expect = 3e-21
Identities = 32/136 (23%), Positives = 62/136 (45%), Gaps = 21/136 (15%)
Query: 1042 EIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGH 1101
++ + + +Y +V + ++L+ RAG ++++G SGSGKST + + P G
Sbjct: 2 KLHVIDLHKRYG---GHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGA 58
Query: 1102 ITLDGVEIQKL-------------QLKWLRQQMGLVSQEPVLFND-TIRANIAYG----K 1143
I ++G I + QL+ LR ++ +V Q L++ T+ N+
Sbjct: 59 IIVNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVL 118
Query: 1144 GGDATEAEIQAASEMA 1159
G +A +A +A
Sbjct: 119 GLSKHDARERALKYLA 134
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Score = 154 bits (390), Expect = 9e-43
Identities = 73/248 (29%), Positives = 120/248 (48%), Gaps = 25/248 (10%)
Query: 384 IELRDVYFSYPARPNE-QIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGE 442
I+L ++ + Q + S+ + +G ++G SG+GKST+I + P G
Sbjct: 2 IKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGS 61
Query: 443 VLIDGIN---LKEFQLQWIRKKIGLVSQEPVLF-TGSIKDNIAYG------KDDATTEEI 492
VL+DG L E +L R++IG++ Q L + ++ N+A D +
Sbjct: 62 VLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRV 121
Query: 493 RVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSA 552
L D P LSGGQKQR+AIARA+ +P++LL DEATSA
Sbjct: 122 TELLSLVGLGDKHDSYPS-----------NLSGGQKQRVAIARALASNPKVLLCDEATSA 170
Query: 553 LDAESEKVVQEALDRI--MVNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVE 609
LD + + + E L I + T +++ H + V+ D +AVI G+++E+ T S++
Sbjct: 171 LDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVFS 230
Query: 610 DPEGAYSQ 617
P+ +Q
Sbjct: 231 HPKTPLAQ 238
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Score = 90.3 bits (224), Expect = 1e-20
Identities = 29/121 (23%), Positives = 59/121 (48%), Gaps = 8/121 (6%)
Query: 1043 IELHHVSFKYPSRP-DVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGH 1101
I+L +++ + +Q +++L + AG+ ++G SG+GKST++ + P G
Sbjct: 2 IKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGS 61
Query: 1102 ITLDGVEIQKL---QLKWLRQQMGLVSQEPVLFND-TIRANIAYG---KGGDATEAEIQA 1154
+ +DG E+ L +L R+Q+G++ Q L + T+ N+A E + +
Sbjct: 62 VLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRV 121
Query: 1155 A 1155
Sbjct: 122 T 122
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} Length = 200 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Score = 140 bits (355), Expect = 1e-38
Identities = 46/217 (21%), Positives = 96/217 (44%), Gaps = 27/217 (12%)
Query: 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 443
+E+RD+ Y ++ + +++I G G +G GK+T++ I + P GE+
Sbjct: 3 LEIRDLSVGY----DKPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEI 58
Query: 444 LIDGINLKEFQLQWIRKKIGLVSQEPVLFTG-SIKDNIAYG----KDDATTEEIRVATEL 498
+ +G+ + ++ KI + +E ++ S++D + EI A E
Sbjct: 59 IYNGVPI-----TKVKGKIFFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALES 113
Query: 499 ANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESE 558
KL + LS G +R+ +A +L + I +LD+ A+D +S+
Sbjct: 114 VEVLDLKKKLGE------------LSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSK 161
Query: 559 KVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHR 595
V +++ I+ + VI++ R + D+ +H+
Sbjct: 162 HKVLKSILEILKEKGIVIISSR-EELSYCDVNENLHK 197
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} Length = 200 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Score = 86.9 bits (215), Expect = 7e-20
Identities = 26/124 (20%), Positives = 50/124 (40%), Gaps = 13/124 (10%)
Query: 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHI 1102
+E+ +S Y D V + + I G V G +G GK+T++ + + P G I
Sbjct: 3 LEIRDLSVGY----DKPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEI 58
Query: 1103 TLDGVEIQKLQLKWLRQQMGLVSQEPVLFND-TIRANIAYG---KGGDATEAEIQAASEM 1158
+GV I K ++ ++ + +E ++ ++ + G + EI A E
Sbjct: 59 IYNGVPITK-----VKGKIFFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALES 113
Query: 1159 ANAH 1162
Sbjct: 114 VEVL 117
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Score = 139 bits (352), Expect = 1e-37
Identities = 56/239 (23%), Positives = 104/239 (43%), Gaps = 14/239 (5%)
Query: 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 443
+ L DV+ + S+ + G L+G SG GK+T + +I +P G++
Sbjct: 4 VRLVDVWKVFGEV---TAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQI 60
Query: 444 LIDGINL----KEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELA 499
I + K + + I +V Q L+ + + +
Sbjct: 61 YIGDKLVADPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRV 120
Query: 500 NAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEK 559
+ L G+ L+ +LSGGQ+QR+A+ RAI++ P++ L+DE S LDA+
Sbjct: 121 REV--AELL--GLTELLNRKPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRV 176
Query: 560 VVQEALDRI--MVNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVEDPEGAY 615
++ L ++ + TT+ V H D IAV++RG + + G+ ++ + P +
Sbjct: 177 RMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEVYDKPANTF 235
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Score = 73.0 bits (179), Expect = 8e-15
Identities = 19/93 (20%), Positives = 44/93 (47%), Gaps = 7/93 (7%)
Query: 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHI 1102
+ L V + +V R+++L+++ G+ + L+G SG GK+T + ++ +P G I
Sbjct: 4 VRLVDVWKVFG---EVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQI 60
Query: 1103 TLDGVEIQKLQ----LKWLRQQMGLVSQEPVLF 1131
+ + + + + + +V Q L+
Sbjct: 61 YIGDKLVADPEKGIFVPPKDRDIAMVFQSYALY 93
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} Length = 238 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Score = 136 bits (343), Expect = 2e-36
Identities = 62/249 (24%), Positives = 113/249 (45%), Gaps = 21/249 (8%)
Query: 382 GDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAG 441
G + ++D+ + +I G S I G L+G +G+GK+T + +I P +G
Sbjct: 1 GAVVVKDLRKRIGKK---EILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSG 57
Query: 442 EVLIDGINLKEFQLQWIRKKIGLVSQEPVL---FTGSIKDNIAYGKDDATTEEIRVATEL 498
V + G N + +RK I + +E G G +++ EI
Sbjct: 58 IVTVFGKN-VVEEPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIE----- 111
Query: 499 ANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESE 558
+ + G+ + + + S G +++ IARA++ +PR+ +LDE TS LD +
Sbjct: 112 EMVERATEIA--GLGEKIKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNA 169
Query: 559 KVVQEALDRIMVNRTTVI-VAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVEDP----- 611
+ V++ L + T++ +H + V D IA+IH G IVE GT +L E
Sbjct: 170 REVRKILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELKERYKAQNI 229
Query: 612 EGAYSQLIR 620
E + ++++
Sbjct: 230 EEVFEEVVK 238
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} Length = 238 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Score = 76.6 bits (188), Expect = 6e-16
Identities = 16/105 (15%), Positives = 49/105 (46%), Gaps = 5/105 (4%)
Query: 1041 GEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAG 1100
G + + + + ++ + ++ +I G+ L+G +G+GK+T + ++ P +G
Sbjct: 1 GAVVVKDLRKRIG---KKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSG 57
Query: 1101 HITLDGVEIQKLQLKWLRQQMGLVSQEPVLFND-TIRANIAYGKG 1144
+T+ G + + + +R+ + + +E + + + + G
Sbjct: 58 IVTVFGKNVVE-EPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAG 101
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 232 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Score = 135 bits (342), Expect = 2e-36
Identities = 59/244 (24%), Positives = 110/244 (45%), Gaps = 26/244 (10%)
Query: 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 443
++L++V ++ + ++ I G VG SG GKST++ +I +G++
Sbjct: 1 VQLQNVTKAWGEV---VVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDL 57
Query: 444 LIDGINLKEFQLQWIRKKIGLVSQEPVLFTG-SIKDNIAYG------KDDATTEEIRVAT 496
I + + + +G+V Q L+ S+ +N+++G K + + +
Sbjct: 58 FIGEKRMND--TPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVA 115
Query: 497 ELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAE 556
E+ A +D+ P+ LSGGQ+QR+AI R ++ +P + LLDE S LDA
Sbjct: 116 EVLQLAHLLDRKPK-----------ALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAA 164
Query: 557 SEKVVQEALDRI--MVNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVEDPEG 613
++ + R+ + RT + V H AD I V+ G++ + G +L P
Sbjct: 165 LRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYPAD 224
Query: 614 AYSQ 617
+
Sbjct: 225 RFVA 228
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 232 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Score = 76.5 bits (188), Expect = 5e-16
Identities = 25/101 (24%), Positives = 51/101 (50%), Gaps = 6/101 (5%)
Query: 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHI 1102
++L +V+ + +V V +D+NL I G+ V VG SG GKST++ ++ +G +
Sbjct: 1 VQLQNVTKAWG---EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDL 57
Query: 1103 TLDGVEIQKLQLKWLRQQMGLVSQEPVLFND-TIRANIAYG 1142
+ + + +G+V Q L+ ++ N+++G
Sbjct: 58 FIGEKRMND--TPPAERGVGMVFQSYALYPHLSVAENMSFG 96
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Score = 135 bits (341), Expect = 3e-36
Identities = 55/233 (23%), Positives = 108/233 (46%), Gaps = 12/233 (5%)
Query: 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 443
+E++ ++ Y A G + + G L+G +G+GK+T +S I Q G++
Sbjct: 7 LEVQSLHVYYGAI---HAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKI 63
Query: 444 LIDGINL-KEFQLQWIRKKIGLVSQEPVLF-TGSIKDNIAYGKDDATTEEIRVATELANA 501
+ +G ++ + R I LV + +F ++ +N+ G + +E + +L
Sbjct: 64 IFNGQDITNKPAHVINRMGIALVPEGRRIFPELTVYENLMMGAYNRKDKE-GIKRDLEWI 122
Query: 502 AKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVV 561
+L + + L G LSGG++Q +AI RA++ P++L++DE + L V
Sbjct: 123 FSLFPRLKERLKQLGG----TLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEV 178
Query: 562 QEALDRIM-VNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVEDPE 612
E + +I T ++V A V+ G+IV +G S+L+++
Sbjct: 179 FEVIQKINQEGTTILLVEQNALGALKVAHYGYVLETGQIVLEGKASELLDNEM 231
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Score = 68.4 bits (167), Expect = 3e-13
Identities = 26/119 (21%), Positives = 51/119 (42%), Gaps = 5/119 (4%)
Query: 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHI 1102
+E+ + Y + + ++LK+ G+ V L+G +G+GK+T +S + G I
Sbjct: 7 LEVQSLHVYYG---AIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKI 63
Query: 1103 TLDGVEIQKL-QLKWLRQQMGLVSQEPVLFND-TIRANIAYGKGGDATEAEIQAASEMA 1159
+G +I R + LV + +F + T+ N+ G + I+ E
Sbjct: 64 IFNGQDITNKPAHVINRMGIALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWI 122
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 254 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 134 bits (339), Expect = 9e-36
Identities = 47/240 (19%), Positives = 105/240 (43%), Gaps = 15/240 (6%)
Query: 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 443
+ ++ + + G SIS++ G ++G +GSGKST+I++I F G V
Sbjct: 5 LRTENIVKYFGEF---KALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRV 61
Query: 444 LIDGINL-KEFQLQWIRKKIGLVSQEPVLFTG-SIKDNIAYG---KDDATTEEIRVATEL 498
+ ++ + + I Q P ++ +N+ G ++ + +
Sbjct: 62 YFENKDITNKEPAELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWI 121
Query: 499 ANAAKFIDKLPQ-----GIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSAL 553
+ ++K + + L +LSGGQ + + I RA++ +P+++++DE + +
Sbjct: 122 PKEEEMVEKAFKILEFLKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGV 181
Query: 554 DAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVEDP 611
+ + + T +I+ HRL V N D + V+ G+I+ +G + +++
Sbjct: 182 APGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRGEEEIKNV 241
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 254 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 78.9 bits (194), Expect = 1e-16
Identities = 18/102 (17%), Positives = 44/102 (43%), Gaps = 5/102 (4%)
Query: 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHI 1102
+ ++ + + + +++ + G ++G +GSGKST+++++ F D G +
Sbjct: 5 LRTENIVKYFG---EFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRV 61
Query: 1103 TLDGVEIQKLQLKWL-RQQMGLVSQEPVLFND-TIRANIAYG 1142
+ +I + L + Q P + T+ N+ G
Sbjct: 62 YFENKDITNKEPAELYHYGIVRTFQTPQPLKEMTVLENLLIG 103
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 125 bits (315), Expect = 7e-33
Identities = 74/242 (30%), Positives = 120/242 (49%), Gaps = 16/242 (6%)
Query: 399 EQIFSGFSISIS---SGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQL 455
E+ F +++ L+G +G+GKS + LI P GEV ++G ++ L
Sbjct: 8 EKRLGNFRLNVDFEMGRDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADIT--PL 65
Query: 456 QWIRKKIGLVSQEPVLFTG-SIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDT 514
R+ IG V Q+ LF S+ NIAYG + E + +KL GI
Sbjct: 66 PPERRGIGFVPQDYALFPHLSVYRNIAYGLRNVERVERDRR-----VREMAEKL--GIAH 118
Query: 515 LVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRI--MVNR 572
L+ +LSGG++QR+A+ARA++ PR+LLLDE SA+D +++ V+ E L + +
Sbjct: 119 LLDRKPARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDV 178
Query: 573 TTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVEDPEGAYSQLIRLQEANKESEQT 631
+ V H L AD +AV+ G+IVEKG +L G ++ + + + +
Sbjct: 179 PILHVTHDLIEAAMLADEVAVMLNGRIVEKGKLKELFSAKNGEVAEFLSARNLLLKVSKI 238
Query: 632 ID 633
+D
Sbjct: 239 LD 240
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 68.5 bits (167), Expect = 3e-13
Identities = 31/104 (29%), Positives = 47/104 (45%), Gaps = 4/104 (3%)
Query: 1063 DLNLKIRAGK-TVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQM 1121
LN+ G+ L+G +G+GKS + L+ PD G + L+G +I L R+ +
Sbjct: 15 RLNVDFEMGRDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADIT--PLPPERRGI 72
Query: 1122 GLVSQEPVLFND-TIRANIAYGKGGDATEAEIQAASEMANAHKF 1164
G V Q+ LF ++ NIAYG + EMA
Sbjct: 73 GFVPQDYALFPHLSVYRNIAYGLRNVERVERDRRVREMAEKLGI 116
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} Length = 229 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Score = 121 bits (304), Expect = 2e-31
Identities = 65/238 (27%), Positives = 115/238 (48%), Gaps = 18/238 (7%)
Query: 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 443
IE+ + + S+ + SG ++G +G+GK+ + LI F+ P +G +
Sbjct: 2 IEIESLSRKWK----NFSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRI 57
Query: 444 LIDGINLKEFQLQWIRKKIGLVSQEPVLFTG-SIKDNIAYGKDDATTEEIRVATELANAA 502
L+DG ++ + L + I V Q LF ++K N+ +G ++ + + A
Sbjct: 58 LLDGKDVTD--LSPEKHDIAFVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDL 115
Query: 503 KFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQ 562
K L + LSGG++QR+A+ARA++ +P+ILLLDE SALD +++ +
Sbjct: 116 KIEHLL--------DRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAR 167
Query: 563 EALDRI--MVNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVEDPEGAYSQ 617
E L + T + + H + R AD IAV+ GK+++ G ++ E P
Sbjct: 168 EMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEIFEKPVEGRVA 225
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} Length = 229 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Score = 75.1 bits (184), Expect = 1e-15
Identities = 33/145 (22%), Positives = 66/145 (45%), Gaps = 13/145 (8%)
Query: 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHI 1102
IE+ +S K+ + +L+LK+ +G+ ++G +G+GK+ + L+ F+ PD+G I
Sbjct: 2 IEIESLSRKWKNF----SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRI 57
Query: 1103 TLDGVEIQKLQLKWLRQQMGLVSQEPVLFND-TIRANIAYG---KGGDATEAEIQAASEM 1158
LDG ++ L + + V Q LF ++ N+ +G K + + A ++
Sbjct: 58 LLDGKDVTDLS--PEKHDIAFVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDL 115
Query: 1159 A---NAHKFICSLQQVRTSRLLLVM 1180
+ +L R+ L
Sbjct: 116 KIEHLLDRNPLTLSGGEQQRVALAR 140
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Score = 120 bits (303), Expect = 3e-31
Identities = 63/239 (26%), Positives = 116/239 (48%), Gaps = 13/239 (5%)
Query: 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 443
I +++V + + +I+I +G ++G SG+GK+T + +I P GE+
Sbjct: 4 IIVKNVSKVFK-KGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGEL 62
Query: 444 LIDGINLKEFQLQWIR---KKIGLVSQEPVLFTG-SIKDNIAYGKDDATTEEIRVATELA 499
D + + +KIG+V Q L+ + +NIA+ + + + +
Sbjct: 63 YFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVE 122
Query: 500 NAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEK 559
AK +D I ++ +LSG Q+QR+A+ARA++KDP +LLLDE S LDA
Sbjct: 123 EVAKILD-----IHHVLNHFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRD 177
Query: 560 VVQEALDRI--MVNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVEDPEGAY 615
+ + + + T ++V+H + + AD + V+ +GK+V+ G L ++P
Sbjct: 178 SARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDLYDNPVSIQ 236
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Score = 80.1 bits (197), Expect = 4e-17
Identities = 24/105 (22%), Positives = 49/105 (46%), Gaps = 5/105 (4%)
Query: 1042 EIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGH 1101
I + +VS + + V ++N+ I G+ ++G SG+GK+T + ++ P G
Sbjct: 3 RIIVKNVSKVFK-KGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGE 61
Query: 1102 ITLDGVEIQKLQLKWLR---QQMGLVSQEPVLFND-TIRANIAYG 1142
+ D + + +++G+V Q L+ + T NIA+
Sbjct: 62 LYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFP 106
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} Length = 178 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Score = 98.5 bits (244), Expect = 4e-24
Identities = 19/191 (9%), Positives = 46/191 (24%), Gaps = 29/191 (15%)
Query: 416 ALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGS 475
+ G+ G GK+T++ I +A + + E + + + I ++ + +
Sbjct: 4 IITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKRTGFRIITTEGKKKIFSSKF 63
Query: 476 IKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIAR 535
G V + A
Sbjct: 64 FTSKKLVGSYG-----------------------------VNVQYFEELAIPILERAYRE 94
Query: 536 AILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHR 595
A +++++DE + N V I +
Sbjct: 95 AKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHDPNVNVVATIPIRDVHPLVKEIRRLPG 154
Query: 596 GKIVEKGTHSK 606
++E ++
Sbjct: 155 AVLIELTPENR 165
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} Length = 178 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Score = 62.7 bits (151), Expect = 9e-12
Identities = 10/69 (14%), Positives = 26/69 (37%)
Query: 1074 VALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFND 1133
+ + GE G GK+T+V + A + V + + + + + ++ + +
Sbjct: 3 IIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKRTGFRIITTEGKKKIFSSK 62
Query: 1134 TIRANIAYG 1142
+ G
Sbjct: 63 FFTSKKLVG 71
|
| >d2hyda2 f.37.1.1 (A:1-323) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 323 | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: ABC transporter transmembrane region superfamily: ABC transporter transmembrane region family: ABC transporter transmembrane region domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Score = 79.6 bits (194), Expect = 2e-16
Identities = 49/322 (15%), Positives = 101/322 (31%), Gaps = 7/322 (2%)
Query: 708 RRLAYLNKPEIPVILAGTIAAMANGVILPIYGLLISSVIETFFKPPHELKKDSRFWALIY 767
+R KP I A I + I + LLI I+ + I
Sbjct: 3 KRYLQFVKPYKYRIFATIIVGIIKFGIPMLIPLLIKYAIDGVINNHALTTDEKVHHLTIA 62
Query: 768 LALGAGSFLL-----SPAQSYFFAVAGNKLIQRIRSMCFEKVIHMEVSWFDEPEHSSGAI 822
+ + F++ + Y NK++ IR + + + ++ +
Sbjct: 63 IGIALFIFVIVRPPIEFIRQYLAQWTSNKILYDIRKKLYNHLQALSARFYANNQVGQVIS 122
Query: 823 GARLSADAASVRALVGDALARIVQNISTAAAGLIIAFTASWQLALIILVMLPLIGVSGYT 882
+ + L I + T L I F +L L L + P ++ Y
Sbjct: 123 RVINDVEQTKDF--ILTGLMNIWLDCITIIIALSIMFFLDVKLTLAALFIFPFYILTVYV 180
Query: 883 QMKFMKGFSADAKMKYEEASQVANDAVGSIRTVASFCAEEKVMQLYKKKCEAPMKTGIRQ 942
++ + + E ++ V I V SF E+ + + KK + ++
Sbjct: 181 FFGRLRKLTRERSQALAEVQGFLHERVQGISVVKSFAIEDNEAKNFDKKNTNFLTRALKH 240
Query: 943 GMVSGGGFGASFFLLFAFYAASFYAGARLVEDGKATFSDVFKVFFSLTMTAIGISQSSSF 1002
+ F A + GA L G T + L + + + +
Sbjct: 241 TRWNAYSFAAINTVTDIGPIIVIGVGAYLAISGSITVGTLAAFVGYLELLFGPLRRLVAS 300
Query: 1003 SSDSNKAKSAAASIFAIIDRES 1024
+ ++ ++ +F +ID +
Sbjct: 301 FTTLTQSFASMDRVFQLIDEDY 322
|
| >d2hyda2 f.37.1.1 (A:1-323) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 323 | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: ABC transporter transmembrane region superfamily: ABC transporter transmembrane region family: ABC transporter transmembrane region domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Score = 60.7 bits (145), Expect = 4e-10
Identities = 43/310 (13%), Positives = 88/310 (28%), Gaps = 4/310 (1%)
Query: 60 LMIIGSIGAIGNGLCLPLMTLLFGDLINTFGDNQNNSETVDKVS---KVAVKFVYLGIGS 116
+ I I L+ LL I+ +N + + + I
Sbjct: 15 RIFATIIVGIIKFGIPMLIPLLIKYAIDGVINNHALTTDEKVHHLTIAIGIALFIFVIVR 74
Query: 117 GIASFLQVTCWMITGERQATRIRGLYLKTILRQDVAFFDNETNTGEVVGRMSGDTVLIQD 176
F++ T + IR + F+ N + R+ D +D
Sbjct: 75 PPIEFIRQYLAQWTSNKILYDIRKKLYNHLQALSARFYANNQVGQVIS-RVINDVEQTKD 133
Query: 177 AMGEKVGKFLQLMATFLGGFLIAFIKGWLLTLVMLSSIPLLAMSGGVMAIMISKMSSRGQ 236
+ + T + I F LTL L P ++ V + K++
Sbjct: 134 FILTGLMNIWLDCITIIIALSIMFFLDVKLTLAALFIFPFYILTVYVFFGRLRKLTRERS 193
Query: 237 GAYAKAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYKSGVQEGLAAGIGLGMVML 296
A A+ + + + I V SF E N+ K ++ +
Sbjct: 194 QALAEVQGFLHERVQGISVVKSFAIEDNEAKNFDKKNTNFLTRALKHTRWNAYSFAAINT 253
Query: 297 IVFCSYALSVWYGGKLILEEGYNGGQVVNVMVAVLTGSMSLGEASPCLSAFGAGQAAAFK 356
+ + + G L + G + + + L + A+ +
Sbjct: 254 VTDIGPIIVIGVGAYLAISGSITVGTLAAFVGYLELLFGPLRRLVASFTTLTQSFASMDR 313
Query: 357 MFETINRKPE 366
+F+ I+ +
Sbjct: 314 VFQLIDEDYD 323
|
| >d3b60a2 f.37.1.1 (A:10-328) Multidrug resistance ABC transporter MsbA, N-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 319 | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: ABC transporter transmembrane region superfamily: ABC transporter transmembrane region family: ABC transporter transmembrane region domain: Multidrug resistance ABC transporter MsbA, N-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Score = 77.3 bits (188), Expect = 1e-15
Identities = 57/316 (18%), Positives = 121/316 (38%), Gaps = 4/316 (1%)
Query: 708 RRLAYLNKPEIPVILAGTIAAMANGVILPIYGLLISSVIETFFKPPHELKKDSRFWALIY 767
RRL P ++ IA + N L+ +++ F + + L+
Sbjct: 5 RRLWPTIAPFKAGLIVAGIALILNAASDTFMLSLLKPLLDDGF--GKTDRSVLLWMPLVV 62
Query: 768 LALGAGSFLLSPAQSYFFAVAGNKLIQRIRSMCFEKVIHMEVSWFDEPEHSSGAIGARLS 827
+ L + S SY + K++ +R F ++ M V++FD+ +
Sbjct: 63 IGLMILRGITSYISSYCISWVSGKVVMTMRRRLFGHMMGMPVAFFDKQSTGTLLSRIT-- 120
Query: 828 ADAASVRALVGDALARIVQNISTAAAGLIIAFTASWQLALIILVMLPLIGVSGYTQMKFM 887
D+ V + AL +V+ ++ I+ F SWQL++I++V+ P++ ++ K
Sbjct: 121 YDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQLSIILVVLAPIVSIAIRVVSKRF 180
Query: 888 KGFSADAKMKYEEASQVANDAVGSIRTVASFCAEEKVMQLYKKKCEAPMKTGIRQGMVSG 947
+ S + + + + A + + V F +E + + K G++ S
Sbjct: 181 RSISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNKMRLQGMKMVSASS 240
Query: 948 GGFGASFFLLFAFYAASFYAGARLVEDGKATFSDVFKVFFSLTMTAIGISQSSSFSSDSN 1007
+ A YA + T + VF S+ + ++ ++
Sbjct: 241 ISDPIIQLIASLALAFVLYAASFPSVMDSLTAGTITVVFSSMIALMRPLKSLTNVNAQFQ 300
Query: 1008 KAKSAAASIFAIIDRE 1023
+ +A ++FAI+D E
Sbjct: 301 RGMAACQTLFAILDSE 316
|
| >d3b60a2 f.37.1.1 (A:10-328) Multidrug resistance ABC transporter MsbA, N-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 319 | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: ABC transporter transmembrane region superfamily: ABC transporter transmembrane region family: ABC transporter transmembrane region domain: Multidrug resistance ABC transporter MsbA, N-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Score = 63.8 bits (153), Expect = 3e-11
Identities = 48/307 (15%), Positives = 114/307 (37%), Gaps = 5/307 (1%)
Query: 60 LMIIGSIGAIGNGLCLPLMTLLFGDLINTFGDNQNNSETVDKVSKVAVKFVYLGIGSGIA 119
+I+ I I N M L L++ + S + + + + L I GI
Sbjct: 17 GLIVAGIALILNAASDTFMLSLLKPLLDDGFGKTDRS----VLLWMPLVVIGLMILRGIT 72
Query: 120 SFLQVTCWMITGERQATRIRGLYLKTILRQDVAFFDNETNTGEVVGRMSGDTVLIQDAMG 179
S++ C + +R ++ VAFFD ++ + + + G
Sbjct: 73 SYISSYCISWVSGKVVMTMRRRLFGHMMGMPVAFFDKQSTGTLLSRITYDSEQVASSSSG 132
Query: 180 EKVGKFLQLMATFLGGFLIAFIKGWLLTLVMLSSIPLLAMSGGVMAIMISKMSSRGQGAY 239
+ + + ++ + W L+++++ P+++++ V++ +S Q
Sbjct: 133 ALITVVREGASIIGLFIMMFYYS-WQLSIILVVLAPIVSIAIRVVSKRFRSISKNMQNTM 191
Query: 240 AKAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYKSGVQEGLAAGIGLGMVMLIVF 299
+ + EQ + + V F G++ + K G++ A+ I ++ LI
Sbjct: 192 GQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNKMRLQGMKMVSASSISDPIIQLIAS 251
Query: 300 CSYALSVWYGGKLILEEGYNGGQVVNVMVAVLTGSMSLGEASPCLSAFGAGQAAAFKMFE 359
+ A ++ + + G + V +++ L + + F G AA +F
Sbjct: 252 LALAFVLYAASFPSVMDSLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFA 311
Query: 360 TINRKPE 366
++ + E
Sbjct: 312 ILDSEQE 318
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} Length = 189 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Score = 50.4 bits (119), Expect = 2e-07
Identities = 26/186 (13%), Positives = 54/186 (29%), Gaps = 8/186 (4%)
Query: 417 LVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSI 476
L G G GK+T+I V + I + +S +
Sbjct: 6 LTGPPGVGKTTLIHKASEVLKSSGVPVDGFYTEEVRQGGRRIGFDVVTLSGTRGPLSRVG 65
Query: 477 KDNIAYGKDDATTEEIRVATELANAAKFIDK-----LPQGIDTLVGEHGTQLSGGQKQRI 531
+ ++ + + T A + + G V + ++ + I
Sbjct: 66 LEPPPGKRECRVGQYVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQLFI 125
Query: 532 AIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIA 591
R L P ++L +V+E +R V V +R + D++
Sbjct: 126 QAVRQTLSTPGTIILGTIPVPKGKPLA-LVEEIRNRKDVKVFNVTKENRNHLLP--DIVT 182
Query: 592 VIHRGK 597
+ +
Sbjct: 183 CVQSSR 188
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} Length = 189 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.4 bits (93), Expect = 4e-04
Identities = 9/70 (12%), Positives = 20/70 (28%)
Query: 1072 KTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLF 1131
+ V L G G GK+T++ + E + + + + +S
Sbjct: 2 RHVFLTGPPGVGKTTLIHKASEVLKSSGVPVDGFYTEEVRQGGRRIGFDVVTLSGTRGPL 61
Query: 1132 NDTIRANIAY 1141
+
Sbjct: 62 SRVGLEPPPG 71
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 427 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 40.9 bits (94), Expect = 8e-04
Identities = 20/93 (21%), Positives = 39/93 (41%), Gaps = 8/93 (8%)
Query: 521 TQLSGGQKQRIAI----ARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVI 576
LSGG+K A+ A + +LDE +ALD + + + + R I
Sbjct: 331 EYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFI 390
Query: 577 VA-HRLSTVRNADMIAVIHRGKIVEKGTHSKLV 608
V + + +D + ++R ++ SK++
Sbjct: 391 VISLKNTMFEKSDALVGVYR---QQQENSSKII 420
|
| >d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} Length = 176 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein Atu3015 species: Agrobacterium tumefaciens [TaxId: 358]
Score = 38.4 bits (88), Expect = 0.002
Identities = 12/36 (33%), Positives = 14/36 (38%)
Query: 1070 AGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLD 1105
G + L G GSGKST+ L H D
Sbjct: 3 GGNILLLSGHPGSGKSTIAEALANLPGVPKVHFHSD 38
|
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 1198 | |||
| d2pmka1 | 241 | Haemolysin B ATP-binding protein {Escherichia coli | 100.0 | |
| d2hyda1 | 255 | Putative multidrug export ATP-binding/permease pro | 100.0 | |
| d3b60a1 | 253 | Multidrug resistance ABC transporter MsbA, C-termi | 100.0 | |
| d1jj7a_ | 251 | Peptide transporter Tap1, C-terminal ABC domain {H | 100.0 | |
| d1mv5a_ | 242 | Multidrug resistance ABC transporter LmrA, C-termi | 100.0 | |
| d1r0wa_ | 281 | Cystic fibrosis transmembrane conductance regulato | 100.0 | |
| d1v43a3 | 239 | Hypothetical protein PH0022, N-terminal domain {Py | 100.0 | |
| d3d31a2 | 229 | Sulfate/molybdate ABC transporter, ATP-binding pro | 100.0 | |
| d1oxxk2 | 242 | Glucose transport protein GlcV, N-terminal domain | 100.0 | |
| d2awna2 | 232 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d3dhwc1 | 240 | Methionine import ATP-binding protein MetN {Escher | 100.0 | |
| d1g2912 | 240 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d1l2ta_ | 230 | MJ0796 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d1b0ua_ | 258 | ATP-binding subunit of the histidine permease {Sal | 100.0 | |
| d1ji0a_ | 240 | Branched chain aminoacid ABC transporter {Thermoto | 100.0 | |
| d1vpla_ | 238 | Putative ABC transporter TM0544 {Thermotoga mariti | 100.0 | |
| d2onka1 | 240 | Molybdate/tungstate import ATP-binding protein Wtp | 100.0 | |
| d1g6ha_ | 254 | MJ1267 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d1l7vc_ | 231 | ABC transporter involved in vitamin B12 uptake, Bt | 100.0 | |
| d1sgwa_ | 200 | Putative ABC transporter PF0895 {Pyrococcus furios | 100.0 | |
| d2hyda1 | 255 | Putative multidrug export ATP-binding/permease pro | 100.0 | |
| d2pmka1 | 241 | Haemolysin B ATP-binding protein {Escherichia coli | 100.0 | |
| d3b60a1 | 253 | Multidrug resistance ABC transporter MsbA, C-termi | 100.0 | |
| d1jj7a_ | 251 | Peptide transporter Tap1, C-terminal ABC domain {H | 100.0 | |
| d1mv5a_ | 242 | Multidrug resistance ABC transporter LmrA, C-termi | 99.98 | |
| d3b60a2 | 319 | Multidrug resistance ABC transporter MsbA, N-termi | 99.96 | |
| d2hyda2 | 323 | Putative multidrug export ATP-binding/permease pro | 99.96 | |
| d3b60a2 | 319 | Multidrug resistance ABC transporter MsbA, N-termi | 99.92 | |
| d2hyda2 | 323 | Putative multidrug export ATP-binding/permease pro | 99.92 | |
| d3d31a2 | 229 | Sulfate/molybdate ABC transporter, ATP-binding pro | 99.9 | |
| d1r0wa_ | 281 | Cystic fibrosis transmembrane conductance regulato | 99.9 | |
| d2awna2 | 232 | Maltose transport protein MalK, N-terminal domain | 99.9 | |
| d1oxxk2 | 242 | Glucose transport protein GlcV, N-terminal domain | 99.9 | |
| d3dhwc1 | 240 | Methionine import ATP-binding protein MetN {Escher | 99.89 | |
| d1v43a3 | 239 | Hypothetical protein PH0022, N-terminal domain {Py | 99.89 | |
| d1l2ta_ | 230 | MJ0796 {Archaeon Methanococcus jannaschii [TaxId: | 99.89 | |
| d1g2912 | 240 | Maltose transport protein MalK, N-terminal domain | 99.88 | |
| d1b0ua_ | 258 | ATP-binding subunit of the histidine permease {Sal | 99.85 | |
| d1ji0a_ | 240 | Branched chain aminoacid ABC transporter {Thermoto | 99.84 | |
| d1vpla_ | 238 | Putative ABC transporter TM0544 {Thermotoga mariti | 99.84 | |
| d1g6ha_ | 254 | MJ1267 {Archaeon Methanococcus jannaschii [TaxId: | 99.84 | |
| d1sgwa_ | 200 | Putative ABC transporter PF0895 {Pyrococcus furios | 99.82 | |
| d2onka1 | 240 | Molybdate/tungstate import ATP-binding protein Wtp | 99.79 | |
| d1l7vc_ | 231 | ABC transporter involved in vitamin B12 uptake, Bt | 99.74 | |
| g1f2t.1 | 292 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.7 | |
| d1ye8a1 | 178 | Hypothetical kinase-like protein Aq_1292 {Aquifex | 99.62 | |
| d1w1wa_ | 427 | Smc head domain {Baker's yeast (Saccharomyces cere | 99.13 | |
| d1e69a_ | 308 | Smc head domain {Thermotoga maritima [TaxId: 2336] | 99.01 | |
| g1ii8.1 | 369 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 98.78 | |
| g1xew.1 | 329 | Smc head domain {Pyrococcus furiosus [TaxId: 2261] | 98.72 | |
| d1ye8a1 | 178 | Hypothetical kinase-like protein Aq_1292 {Aquifex | 98.45 | |
| d1g6oa_ | 323 | Hexameric traffic ATPase, HP0525 {Helicobacter pyl | 97.09 | |
| d2i3ba1 | 189 | Cancer-related NTPase, C1orf57 {Human (Homo sapien | 96.95 | |
| d1s96a_ | 205 | Guanylate kinase {Escherichia coli [TaxId: 562]} | 96.94 | |
| d1znwa1 | 182 | Guanylate kinase {Mycobacterium tuberculosis [TaxI | 96.93 | |
| d1zp6a1 | 176 | Hypothetical protein Atu3015 {Agrobacterium tumefa | 96.87 | |
| d1ewqa2 | 224 | DNA repair protein MutS, the C-terminal domain {Th | 96.75 | |
| d1wb9a2 | 234 | DNA repair protein MutS, the C-terminal domain {Es | 96.6 | |
| d1u0la2 | 225 | Probable GTPase EngC (YjeQ), C-terminal domain {Th | 96.6 | |
| d1ly1a_ | 152 | Polynucleotide kinase, kinase domain {Bacteriophag | 96.56 | |
| d1g6oa_ | 323 | Hexameric traffic ATPase, HP0525 {Helicobacter pyl | 96.5 | |
| d1np6a_ | 170 | Molybdopterin-guanine dinucleotide biosynthesis pr | 96.48 | |
| d1cr2a_ | 277 | Gene 4 protein (g4p, DNA primase), helicase domain | 96.47 | |
| d1u0la2 | 225 | Probable GTPase EngC (YjeQ), C-terminal domain {Th | 96.45 | |
| d1zp6a1 | 176 | Hypothetical protein Atu3015 {Agrobacterium tumefa | 96.34 | |
| d1znwa1 | 182 | Guanylate kinase {Mycobacterium tuberculosis [TaxI | 96.32 | |
| d1tf7a2 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 96.31 | |
| d1np6a_ | 170 | Molybdopterin-guanine dinucleotide biosynthesis pr | 96.29 | |
| d1m8pa3 | 183 | ATP sulfurylase C-terminal domain {Fungus (Penicil | 96.27 | |
| g1f2t.1 | 292 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 96.24 | |
| d1mkya2 | 186 | Probable GTPase Der, N-terminal and middle domains | 96.16 | |
| d2i3ba1 | 189 | Cancer-related NTPase, C1orf57 {Human (Homo sapien | 96.06 | |
| d1nlfa_ | 274 | Hexameric replicative helicase repA {Escherichia c | 96.03 | |
| d1t9ha2 | 231 | Probable GTPase EngC (YjeQ), C-terminal domain {Ba | 95.93 | |
| d1t9ha2 | 231 | Probable GTPase EngC (YjeQ), C-terminal domain {Ba | 95.93 | |
| d1xjca_ | 165 | Molybdopterin-guanine dinucleotide biosynthesis pr | 95.93 | |
| d1gkya_ | 186 | Guanylate kinase {Baker's yeast (Saccharomyces cer | 95.92 | |
| d2bdta1 | 176 | Hypothetical protein BH3686 {Bacillus halodurans [ | 95.89 | |
| d1rz3a_ | 198 | Hypothetical protein rbstp0775 {Bacillus stearothe | 95.88 | |
| d1y63a_ | 174 | Probable kinase LmjF30.1890 {Leishmania major [Tax | 95.86 | |
| g1ii8.1 | 369 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 95.84 | |
| d1svia_ | 195 | Probable GTPase EngB {Bacillus subtilis [TaxId: 14 | 95.82 | |
| d1lw7a2 | 192 | Transcriptional regulator NadR, ribosylnicotinamid | 95.82 | |
| d1qhxa_ | 178 | Chloramphenicol phosphotransferase {Streptomyces v | 95.75 | |
| d1xjca_ | 165 | Molybdopterin-guanine dinucleotide biosynthesis pr | 95.69 | |
| d1ly1a_ | 152 | Polynucleotide kinase, kinase domain {Bacteriophag | 95.68 | |
| d1lv7a_ | 256 | AAA domain of cell division protein FtsH {Escheric | 95.68 | |
| d1sq5a_ | 308 | Pantothenate kinase PanK {Escherichia coli [TaxId: | 95.67 | |
| d1khta_ | 190 | Adenylate kinase {Archaeon Methanococcus voltae [T | 95.64 | |
| d1m8pa3 | 183 | ATP sulfurylase C-terminal domain {Fungus (Penicil | 95.64 | |
| d1mkya2 | 186 | Probable GTPase Der, N-terminal and middle domains | 95.59 | |
| d1yj5a2 | 172 | 5' polynucleotide kinase-3' phosphatase, C-termina | 95.59 | |
| d2cxxa1 | 184 | GTP-binding protein engB {Pyrococcus horikoshii [T | 95.56 | |
| d1s96a_ | 205 | Guanylate kinase {Escherichia coli [TaxId: 562]} | 95.54 | |
| d1knqa_ | 171 | Gluconate kinase {Escherichia coli [TaxId: 562]} | 95.51 | |
| d1rkba_ | 173 | Adenylate kinase {Human (Homo sapiens), isoenzyme | 95.51 | |
| d1r7ra3 | 265 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 95.44 | |
| d1x6va3 | 195 | Adenosine-5'phosphosulfate kinase (APS kinase) {Hu | 95.44 | |
| d1lnza2 | 185 | Obg GTP-binding protein middle domain {Bacillus su | 95.43 | |
| d1qhxa_ | 178 | Chloramphenicol phosphotransferase {Streptomyces v | 95.43 | |
| d1knqa_ | 171 | Gluconate kinase {Escherichia coli [TaxId: 562]} | 95.4 | |
| d1y63a_ | 174 | Probable kinase LmjF30.1890 {Leishmania major [Tax | 95.38 | |
| d1uj2a_ | 213 | Uridine-cytidine kinase 2 {Human (Homo sapiens) [T | 95.36 | |
| d1kaga_ | 169 | Shikimate kinase (AroK) {Escherichia coli [TaxId: | 95.34 | |
| d1rz3a_ | 198 | Hypothetical protein rbstp0775 {Bacillus stearothe | 95.33 | |
| d1mkya1 | 171 | Probable GTPase Der, N-terminal and middle domains | 95.3 | |
| d1bifa1 | 213 | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphata | 95.29 | |
| d1lw7a2 | 192 | Transcriptional regulator NadR, ribosylnicotinamid | 95.28 | |
| d2gj8a1 | 161 | Probable tRNA modification GTPase TrmE (MnmE), G d | 95.26 | |
| d1m7ga_ | 208 | Adenosine-5'phosphosulfate kinase (APS kinase) {Fu | 95.22 | |
| d1wf3a1 | 178 | GTPase Era, N-terminal domain {Thermus thermophilu | 95.21 | |
| d2bdta1 | 176 | Hypothetical protein BH3686 {Bacillus halodurans [ | 95.18 | |
| d1udxa2 | 180 | Obg GTP-binding protein middle domain {Thermus the | 95.18 | |
| d1kgda_ | 178 | Guanylate kinase-like domain of Cask {Human (Homo | 95.18 | |
| d1qhla_ | 222 | Cell division protein MukB {Escherichia coli [TaxI | 95.16 | |
| d1egaa1 | 179 | GTPase Era, N-terminal domain {Escherichia coli [T | 95.14 | |
| d1puia_ | 188 | Probable GTPase EngB {Escherichia coli [TaxId: 562 | 95.11 | |
| d1ak2a1 | 190 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 95.1 | |
| d1h65a_ | 257 | Chloroplast protein translocon GTPase Toc34 {Garde | 95.09 | |
| d1ixza_ | 247 | AAA domain of cell division protein FtsH {Thermus | 95.08 | |
| d1svia_ | 195 | Probable GTPase EngB {Bacillus subtilis [TaxId: 14 | 95.03 | |
| d1rkba_ | 173 | Adenylate kinase {Human (Homo sapiens), isoenzyme | 94.99 | |
| d1sq5a_ | 308 | Pantothenate kinase PanK {Escherichia coli [TaxId: | 94.87 | |
| d1khta_ | 190 | Adenylate kinase {Archaeon Methanococcus voltae [T | 94.87 | |
| d1qf9a_ | 194 | UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4 | 94.84 | |
| d1kgda_ | 178 | Guanylate kinase-like domain of Cask {Human (Homo | 94.82 | |
| d1upta_ | 169 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 94.82 | |
| d1f6ba_ | 186 | SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: | 94.81 | |
| d1kaga_ | 169 | Shikimate kinase (AroK) {Escherichia coli [TaxId: | 94.78 | |
| d1r8sa_ | 160 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 94.78 | |
| d1xzpa2 | 160 | TrmE GTPase domain {Thermotoga maritima [TaxId: 23 | 94.71 | |
| d1sxje2 | 252 | Replication factor C5 {Baker's yeast (Saccharomyce | 94.7 | |
| d1ukza_ | 196 | Uridylate kinase {Baker's yeast (Saccharomyces cer | 94.68 | |
| d1lvga_ | 190 | Guanylate kinase {Mouse (Mus musculus) [TaxId: 100 | 94.67 | |
| d1nrjb_ | 209 | Signal recognition particle receptor beta-subunit | 94.65 | |
| d1mkya1 | 171 | Probable GTPase Der, N-terminal and middle domains | 94.64 | |
| d1uj2a_ | 213 | Uridine-cytidine kinase 2 {Human (Homo sapiens) [T | 94.63 | |
| d2erxa1 | 171 | di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 94.56 | |
| d1x6va3 | 195 | Adenosine-5'phosphosulfate kinase (APS kinase) {Hu | 94.56 | |
| d2qtvb1 | 166 | SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 94.54 | |
| d1gkya_ | 186 | Guanylate kinase {Baker's yeast (Saccharomyces cer | 94.48 | |
| d2cxxa1 | 184 | GTP-binding protein engB {Pyrococcus horikoshii [T | 94.47 | |
| d2gj8a1 | 161 | Probable tRNA modification GTPase TrmE (MnmE), G d | 94.46 | |
| d1j8yf2 | 211 | GTPase domain of the signal sequence recognition p | 94.46 | |
| d1r8sa_ | 160 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 94.43 | |
| d1lnza2 | 185 | Obg GTP-binding protein middle domain {Bacillus su | 94.39 | |
| d1wb1a4 | 179 | Elongation factor SelB, N-terminal domain {Methano | 94.36 | |
| d1viaa_ | 161 | Shikimate kinase (AroK) {Campylobacter jejuni [Tax | 94.36 | |
| d1tq4a_ | 400 | Interferon-inducible GTPase {Mouse (Mus musculus) | 94.33 | |
| g1xew.1 | 329 | Smc head domain {Pyrococcus furiosus [TaxId: 2261] | 94.31 | |
| d1ak2a1 | 190 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 94.3 | |
| d1wf3a1 | 178 | GTPase Era, N-terminal domain {Thermus thermophilu | 94.29 | |
| d1upta_ | 169 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 94.24 | |
| d1xtqa1 | 167 | GTP-binding protein RheB {Human (Homo sapiens) [Ta | 94.23 | |
| d1qhla_ | 222 | Cell division protein MukB {Escherichia coli [TaxI | 94.11 | |
| d1e6ca_ | 170 | Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax | 94.1 | |
| d1yrba1 | 244 | ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss | 94.05 | |
| d1uf9a_ | 191 | Dephospho-CoA kinase {Thermus thermophilus [TaxId: | 94.04 | |
| d1egaa1 | 179 | GTPase Era, N-terminal domain {Escherichia coli [T | 94.02 | |
| d1n0wa_ | 242 | DNA repair protein Rad51, catalytic domain {Human | 94.0 | |
| d1f6ba_ | 186 | SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: | 93.97 | |
| d1qf9a_ | 194 | UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4 | 93.96 | |
| d2qtvb1 | 166 | SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 93.94 | |
| d1h65a_ | 257 | Chloroplast protein translocon GTPase Toc34 {Garde | 93.88 | |
| d1udxa2 | 180 | Obg GTP-binding protein middle domain {Thermus the | 93.83 | |
| d1lvga_ | 190 | Guanylate kinase {Mouse (Mus musculus) [TaxId: 100 | 93.78 | |
| d1yrba1 | 244 | ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss | 93.77 | |
| d1n0wa_ | 242 | DNA repair protein Rad51, catalytic domain {Human | 93.76 | |
| d1zina1 | 182 | Adenylate kinase {Bacillus stearothermophilus [Tax | 93.74 | |
| d1s3ga1 | 182 | Adenylate kinase {Bacillus globisporus [TaxId: 145 | 93.72 | |
| d1wb1a4 | 179 | Elongation factor SelB, N-terminal domain {Methano | 93.71 | |
| d1puia_ | 188 | Probable GTPase EngB {Escherichia coli [TaxId: 562 | 93.7 | |
| d3adka_ | 194 | Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | 93.7 | |
| d1ksha_ | 165 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 93.69 | |
| d1nrjb_ | 209 | Signal recognition particle receptor beta-subunit | 93.67 | |
| d1teva_ | 194 | UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606] | 93.65 | |
| d2erxa1 | 171 | di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 93.64 | |
| d2vp4a1 | 197 | Deoxyribonucleoside kinase {Fruit fly (Drosophila | 93.55 | |
| d1okkd2 | 207 | GTPase domain of the signal recognition particle r | 93.51 | |
| d1nksa_ | 194 | Adenylate kinase {Archaeon Sulfolobus acidocaldari | 93.5 | |
| d2iyva1 | 165 | Shikimate kinase (AroK) {Mycobacterium tuberculosi | 93.5 | |
| d1p5zb_ | 241 | Deoxycytidine kinase {Human (Homo sapiens) [TaxId: | 93.45 | |
| d1xzpa2 | 160 | TrmE GTPase domain {Thermotoga maritima [TaxId: 23 | 93.45 | |
| d1zaka1 | 189 | Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | 93.41 | |
| d3adka_ | 194 | Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | 93.39 | |
| d1ukza_ | 196 | Uridylate kinase {Baker's yeast (Saccharomyces cer | 93.37 | |
| d1e6ca_ | 170 | Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax | 93.34 | |
| d1viaa_ | 161 | Shikimate kinase (AroK) {Campylobacter jejuni [Tax | 93.32 | |
| d1vmaa2 | 213 | GTPase domain of the signal recognition particle r | 93.32 | |
| d2p67a1 | 327 | LAO/AO transport system kinase ArgK {Escherichia c | 93.32 | |
| d1jjva_ | 205 | Dephospho-CoA kinase {Haemophilus influenzae [TaxI | 93.27 | |
| d1ksha_ | 165 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 93.25 | |
| d1yj5a2 | 172 | 5' polynucleotide kinase-3' phosphatase, C-termina | 93.23 | |
| d1e4va1 | 179 | Adenylate kinase {Escherichia coli [TaxId: 562]} | 93.19 | |
| d1u8za_ | 168 | Ras-related protein RalA {Cotton-top tamarin (Sagu | 93.15 | |
| d2atva1 | 168 | Ras-like estrogen-regulated growth inhibitor, RERG | 93.13 | |
| d2fh5b1 | 207 | Signal recognition particle receptor beta-subunit | 93.1 | |
| d1q3ta_ | 223 | CMP kinase {Streptococcus pneumoniae [TaxId: 1313] | 93.08 | |
| d1bifa1 | 213 | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphata | 93.05 | |
| d1zaka1 | 189 | Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | 93.02 | |
| d1zina1 | 182 | Adenylate kinase {Bacillus stearothermophilus [Tax | 93.01 | |
| d1mo6a1 | 269 | RecA protein, ATPase-domain {Mycobacterium tubercu | 92.97 | |
| d3raba_ | 169 | Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | 92.96 | |
| d2dy1a2 | 267 | Elongation factor G (EF-G), N-terminal (G) domain | 92.95 | |
| d1knxa2 | 177 | HPr kinase HprK C-terminal domain {Mycoplasma pneu | 92.87 | |
| d1xtqa1 | 167 | GTP-binding protein RheB {Human (Homo sapiens) [Ta | 92.86 | |
| d1ckea_ | 225 | CMP kinase {Escherichia coli [TaxId: 562]} | 92.83 | |
| d2erya1 | 171 | r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 92.8 | |
| d1zj6a1 | 177 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 92.79 | |
| d1s3ga1 | 182 | Adenylate kinase {Bacillus globisporus [TaxId: 145 | 92.77 | |
| d1uf9a_ | 191 | Dephospho-CoA kinase {Thermus thermophilus [TaxId: | 92.76 | |
| d2vp4a1 | 197 | Deoxyribonucleoside kinase {Fruit fly (Drosophila | 92.76 | |
| d1ky3a_ | 175 | Rab-related protein ypt7p {Baker's yeast (Saccharo | 92.73 | |
| d1ky3a_ | 175 | Rab-related protein ypt7p {Baker's yeast (Saccharo | 92.73 | |
| d1zj6a1 | 177 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 92.72 | |
| d1a7ja_ | 288 | Phosphoribulokinase {Rhodobacter sphaeroides [TaxI | 92.69 | |
| d1p9ra_ | 401 | Extracellular secretion NTPase EpsE {Vibrio choler | 92.68 | |
| d1tq4a_ | 400 | Interferon-inducible GTPase {Mouse (Mus musculus) | 92.66 | |
| d1gvnb_ | 273 | Plasmid maintenance system epsilon/zeta, toxin zet | 92.66 | |
| d1yzqa1 | 164 | Rab6 {Human (Homo sapiens) [TaxId: 9606]} | 92.65 | |
| d2iyva1 | 165 | Shikimate kinase (AroK) {Mycobacterium tuberculosi | 92.65 | |
| d1teva_ | 194 | UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606] | 92.6 | |
| d1z2aa1 | 164 | Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | 92.59 | |
| d2p67a1 | 327 | LAO/AO transport system kinase ArgK {Escherichia c | 92.58 | |
| d1g8fa3 | 122 | ATP sulfurylase C-terminal domain {Baker's yeast ( | 92.55 | |
| d1fzqa_ | 176 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 92.48 | |
| d1odfa_ | 286 | Hypothetical protein Ygr205W {Baker's yeast (Sacch | 92.35 | |
| d2qy9a2 | 211 | GTPase domain of the signal recognition particle r | 92.32 | |
| d2atva1 | 168 | Ras-like estrogen-regulated growth inhibitor, RERG | 92.32 | |
| d1m7ga_ | 208 | Adenosine-5'phosphosulfate kinase (APS kinase) {Fu | 92.32 | |
| d1z08a1 | 167 | Rab21 {Human (Homo sapiens) [TaxId: 9606]} | 92.31 | |
| d2cdna1 | 181 | Adenylate kinase {Mycobacterium tuberculosis [TaxI | 92.28 | |
| d1w1wa_ | 427 | Smc head domain {Baker's yeast (Saccharomyces cere | 92.26 | |
| d1e69a_ | 308 | Smc head domain {Thermotoga maritima [TaxId: 2336] | 92.19 | |
| d1kkma_ | 176 | HPr kinase HprK C-terminal domain {Lactobacillus c | 92.18 | |
| d1ek0a_ | 170 | Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T | 92.17 | |
| d1nksa_ | 194 | Adenylate kinase {Archaeon Sulfolobus acidocaldari | 92.16 | |
| d1htwa_ | 158 | Hypothetical protein HI0065 {Haemophilus influenza | 92.15 | |
| d3raba_ | 169 | Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | 92.15 | |
| d1jjva_ | 205 | Dephospho-CoA kinase {Haemophilus influenzae [TaxI | 92.14 | |
| d1vg8a_ | 184 | Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | 92.13 | |
| d1okkd2 | 207 | GTPase domain of the signal recognition particle r | 92.04 | |
| d1e4va1 | 179 | Adenylate kinase {Escherichia coli [TaxId: 562]} | 92.04 | |
| d1ofha_ | 309 | HslU {Haemophilus influenzae [TaxId: 727]} | 92.0 | |
| d1vhta_ | 208 | Dephospho-CoA kinase {Escherichia coli [TaxId: 562 | 91.98 | |
| d2erya1 | 171 | r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 91.95 | |
| d1p5zb_ | 241 | Deoxycytidine kinase {Human (Homo sapiens) [TaxId: | 91.95 | |
| d1szpa2 | 251 | DNA repair protein Rad51, catalytic domain {Baker' | 91.92 | |
| d2f7sa1 | 186 | Rab27b {Human (Homo sapiens) [TaxId: 9606]} | 91.91 | |
| d1q3ta_ | 223 | CMP kinase {Streptococcus pneumoniae [TaxId: 1313] | 91.87 | |
| d1nn5a_ | 209 | Thymidylate kinase {Human (Homo sapiens) [TaxId: 9 | 91.85 | |
| d1kaoa_ | 167 | Rap2a {Human (Homo sapiens) [TaxId: 9606]} | 91.85 | |
| d1ctqa_ | 166 | cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9 | 91.84 | |
| d2f9la1 | 175 | Rab11b {Human (Homo sapiens) [TaxId: 9606]} | 91.81 | |
| d1p9ra_ | 401 | Extracellular secretion NTPase EpsE {Vibrio choler | 91.79 | |
| d2fh5b1 | 207 | Signal recognition particle receptor beta-subunit | 91.78 | |
| d1in4a2 | 238 | Holliday junction helicase RuvB {Thermotoga mariti | 91.77 | |
| d1vmaa2 | 213 | GTPase domain of the signal recognition particle r | 91.75 | |
| d1z2aa1 | 164 | Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | 91.72 | |
| d2gjsa1 | 168 | Rad {Human (Homo sapiens) [TaxId: 9606]} | 91.71 | |
| d1zd9a1 | 164 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 91.7 | |
| d2cdna1 | 181 | Adenylate kinase {Mycobacterium tuberculosis [TaxI | 91.67 | |
| d1knxa2 | 177 | HPr kinase HprK C-terminal domain {Mycoplasma pneu | 91.62 | |
| d1a7ja_ | 288 | Phosphoribulokinase {Rhodobacter sphaeroides [TaxI | 91.6 | |
| d1fzqa_ | 176 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 91.58 | |
| d2ak3a1 | 189 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 91.57 | |
| d1g16a_ | 166 | Rab-related protein Sec4 {Baker's yeast (Saccharom | 91.54 | |
| d1vg8a_ | 184 | Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | 91.44 | |
| d2g3ya1 | 172 | GTP-binding protein GEM {Human (Homo sapiens) [Tax | 91.43 | |
| d1ctqa_ | 166 | cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9 | 91.42 | |
| d2bmja1 | 175 | Centaurin gamma 1, G domain {Human (Homo sapiens) | 91.42 | |
| d2bv3a2 | 276 | Elongation factor G (EF-G), N-terminal (G) domain | 91.4 | |
| d1kkma_ | 176 | HPr kinase HprK C-terminal domain {Lactobacillus c | 91.4 | |
| d1nn5a_ | 209 | Thymidylate kinase {Human (Homo sapiens) [TaxId: 9 | 91.36 | |
| d2f9la1 | 175 | Rab11b {Human (Homo sapiens) [TaxId: 9606]} | 91.35 | |
| d1wmsa_ | 174 | Rab9a {Human (Homo sapiens) [TaxId: 9606]} | 91.35 | |
| d1gvnb_ | 273 | Plasmid maintenance system epsilon/zeta, toxin zet | 91.32 | |
| d1j8yf2 | 211 | GTPase domain of the signal sequence recognition p | 91.28 | |
| d2a5ja1 | 173 | Rab2b {Human (Homo sapiens) [TaxId: 9606]} | 91.27 | |
| d1ko7a2 | 169 | HPr kinase HprK C-terminal domain {Staphylococcus | 91.27 | |
| d1szpa2 | 251 | DNA repair protein Rad51, catalytic domain {Baker' | 91.26 | |
| d1kaoa_ | 167 | Rap2a {Human (Homo sapiens) [TaxId: 9606]} | 91.25 | |
| d1zd9a1 | 164 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 91.19 | |
| d1yzqa1 | 164 | Rab6 {Human (Homo sapiens) [TaxId: 9606]} | 91.18 | |
| d2a5ja1 | 173 | Rab2b {Human (Homo sapiens) [TaxId: 9606]} | 91.16 | |
| d1g7sa4 | 227 | Initiation factor IF2/eIF5b, N-terminal (G) domain | 91.16 | |
| d1ofha_ | 309 | HslU {Haemophilus influenzae [TaxId: 727]} | 91.16 | |
| d1z06a1 | 165 | Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | 91.15 | |
| d4tmka_ | 210 | Thymidylate kinase {Escherichia coli [TaxId: 562]} | 91.12 | |
| d2ew1a1 | 171 | Rab30 {Human (Homo sapiens) [TaxId: 9606]} | 91.07 | |
| d1ckea_ | 225 | CMP kinase {Escherichia coli [TaxId: 562]} | 91.01 | |
| d1moza_ | 182 | ADP-ribosylation factor {Baker's yeast (Saccharomy | 91.0 | |
| d1z0ja1 | 167 | Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | 90.99 | |
| d4tmka_ | 210 | Thymidylate kinase {Escherichia coli [TaxId: 562]} | 90.99 | |
| d2ak3a1 | 189 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 90.98 | |
| d1akya1 | 180 | Adenylate kinase {Baker's yeast (Saccharomyces cer | 90.98 | |
| d2c78a3 | 204 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 90.96 | |
| d1ls1a2 | 207 | GTPase domain of the signal sequence recognition p | 90.94 | |
| d1mh1a_ | 183 | Rac {Human (Homo sapiens) [TaxId: 9606]} | 90.93 | |
| d1sxja2 | 253 | Replication factor C1 {Baker's yeast (Saccharomyce | 90.93 | |
| d1akya1 | 180 | Adenylate kinase {Baker's yeast (Saccharomyces cer | 90.85 | |
| d1tf7a1 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 90.81 | |
| d2gjsa1 | 168 | Rad {Human (Homo sapiens) [TaxId: 9606]} | 90.79 | |
| d2f7sa1 | 186 | Rab27b {Human (Homo sapiens) [TaxId: 9606]} | 90.77 | |
| d1g16a_ | 166 | Rab-related protein Sec4 {Baker's yeast (Saccharom | 90.72 | |
| d1pzna2 | 254 | DNA repair protein Rad51, catalytic domain {Archae | 90.7 | |
| d1v5wa_ | 258 | Meiotic recombination protein DMC1/LIM15 homolog { | 90.7 | |
| d1in4a2 | 238 | Holliday junction helicase RuvB {Thermotoga mariti | 90.65 | |
| d1u8za_ | 168 | Ras-related protein RalA {Cotton-top tamarin (Sagu | 90.63 | |
| d1z0fa1 | 166 | Rab14 {Human (Homo sapiens) [TaxId: 9606]} | 90.62 | |
| d1g7sa4 | 227 | Initiation factor IF2/eIF5b, N-terminal (G) domain | 90.59 | |
| d1lv7a_ | 256 | AAA domain of cell division protein FtsH {Escheric | 90.58 | |
| d1xpua3 | 289 | Transcription termination factor Rho, ATPase domai | 90.57 | |
| d2a5yb3 | 277 | CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI | 90.55 | |
| d2ew1a1 | 171 | Rab30 {Human (Homo sapiens) [TaxId: 9606]} | 90.51 | |
| d2fu5c1 | 173 | Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | 90.48 | |
| d1vhta_ | 208 | Dephospho-CoA kinase {Escherichia coli [TaxId: 562 | 90.46 | |
| d1i2ma_ | 170 | Ran {Human (Homo sapiens) [TaxId: 9606]} | 90.44 | |
| d2fn4a1 | 173 | r-Ras {Human (Homo sapiens) [TaxId: 9606]} | 90.42 | |
| d1tmka_ | 214 | Thymidylate kinase {Baker's yeast (Saccharomyces c | 90.34 | |
| d1ls1a2 | 207 | GTPase domain of the signal sequence recognition p | 90.34 | |
| d2i1qa2 | 258 | DNA repair protein Rad51, catalytic domain {Archae | 90.33 | |
| d2g3ya1 | 172 | GTP-binding protein GEM {Human (Homo sapiens) [Tax | 90.3 | |
| d1jala1 | 278 | YchF GTP-binding protein N-terminal domain {Haemop | 90.23 | |
| d1htwa_ | 158 | Hypothetical protein HI0065 {Haemophilus influenza | 90.17 | |
| d1u94a1 | 263 | RecA protein, ATPase-domain {Escherichia coli [Tax | 90.17 | |
| d2bmea1 | 174 | Rab4a {Human (Homo sapiens) [TaxId: 9606]} | 90.16 | |
| d1z06a1 | 165 | Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | 90.16 | |
| d1v5wa_ | 258 | Meiotic recombination protein DMC1/LIM15 homolog { | 90.16 | |
| d1kmqa_ | 177 | RhoA {Human (Homo sapiens) [TaxId: 9606]} | 90.1 | |
| d1tf7a1 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 90.09 | |
| d2bmja1 | 175 | Centaurin gamma 1, G domain {Human (Homo sapiens) | 90.05 | |
| d2qm8a1 | 323 | Metallochaperone MeaB {Methylobacterium extorquens | 90.04 | |
| d1iqpa2 | 231 | Replication factor C {Archaeon Pyrococcus furiosus | 90.02 | |
| d1x1ra1 | 169 | Ras-related protein M-Ras (XRas) {Mouse (Mus muscu | 90.01 | |
| d1z0fa1 | 166 | Rab14 {Human (Homo sapiens) [TaxId: 9606]} | 90.01 | |
| d1odfa_ | 286 | Hypothetical protein Ygr205W {Baker's yeast (Sacch | 90.01 | |
| d1wmsa_ | 174 | Rab9a {Human (Homo sapiens) [TaxId: 9606]} | 89.98 | |
| d1x1ra1 | 169 | Ras-related protein M-Ras (XRas) {Mouse (Mus muscu | 89.96 | |
| d1tmka_ | 214 | Thymidylate kinase {Baker's yeast (Saccharomyces c | 89.95 | |
| d1mh1a_ | 183 | Rac {Human (Homo sapiens) [TaxId: 9606]} | 89.93 | |
| d2g6ba1 | 170 | Rab26 {Human (Homo sapiens) [TaxId: 9606]} | 89.91 | |
| d1z08a1 | 167 | Rab21 {Human (Homo sapiens) [TaxId: 9606]} | 89.89 | |
| d1z0ja1 | 167 | Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | 89.88 | |
| d1kmqa_ | 177 | RhoA {Human (Homo sapiens) [TaxId: 9606]} | 89.88 | |
| d1r2qa_ | 170 | Rab5a {Human (Homo sapiens) [TaxId: 9606]} | 89.86 | |
| d1ixsb2 | 239 | Holliday junction helicase RuvB {Thermus thermophi | 89.83 | |
| d2qy9a2 | 211 | GTPase domain of the signal recognition particle r | 89.79 | |
| d1zcba2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 89.77 | |
| d2i1qa2 | 258 | DNA repair protein Rad51, catalytic domain {Archae | 89.66 | |
| d1fnna2 | 276 | CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T | 89.63 | |
| d1pzna2 | 254 | DNA repair protein Rad51, catalytic domain {Archae | 89.56 | |
| d2qm8a1 | 323 | Metallochaperone MeaB {Methylobacterium extorquens | 89.54 | |
| d1sxjd2 | 237 | Replication factor C2 {Baker's yeast (Saccharomyce | 89.53 | |
| d1x3sa1 | 177 | Rab18 {Human (Homo sapiens) [TaxId: 9606]} | 89.51 | |
| d2fn4a1 | 173 | r-Ras {Human (Homo sapiens) [TaxId: 9606]} | 89.48 | |
| d2fnaa2 | 283 | Archaeal ATPase SSO1545 {Sulfolobus solfataricus [ | 89.43 | |
| d1i2ma_ | 170 | Ran {Human (Homo sapiens) [TaxId: 9606]} | 89.35 | |
| d1moza_ | 182 | ADP-ribosylation factor {Baker's yeast (Saccharomy | 89.33 | |
| d1x3sa1 | 177 | Rab18 {Human (Homo sapiens) [TaxId: 9606]} | 89.33 | |
| d1ek0a_ | 170 | Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T | 89.33 | |
| d2bcgy1 | 194 | GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi | 89.33 | |
| d2fu5c1 | 173 | Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | 89.19 | |
| d1fnna2 | 276 | CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T | 89.18 | |
| d2bmea1 | 174 | Rab4a {Human (Homo sapiens) [TaxId: 9606]} | 89.15 | |
| d1tf7a2 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 89.15 | |
| d1r2qa_ | 170 | Rab5a {Human (Homo sapiens) [TaxId: 9606]} | 89.1 | |
| d2dy1a2 | 267 | Elongation factor G (EF-G), N-terminal (G) domain | 89.06 | |
| d1xpua3 | 289 | Transcription termination factor Rho, ATPase domai | 88.98 | |
| d2akab1 | 299 | Dynamin G domain {Rat (Rattus norvegicus) [TaxId: | 88.93 | |
| d1deka_ | 241 | Deoxynucleoside monophosphate kinase {Bacteriophag | 88.83 | |
| d1sxja2 | 253 | Replication factor C1 {Baker's yeast (Saccharomyce | 88.79 | |
| d2fnaa2 | 283 | Archaeal ATPase SSO1545 {Sulfolobus solfataricus [ | 88.76 | |
| d1d2na_ | 246 | Hexamerization domain of N-ethylmalemide-sensitive | 88.75 | |
| d2atxa1 | 185 | RhoQ {Human (Homo sapiens) [TaxId: 9606]} | 88.74 | |
| d1kk1a3 | 195 | Initiation factor eIF2 gamma subunit, N-terminal ( | 88.74 | |
| d1m7ba_ | 179 | RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | 88.71 | |
| d1wxqa1 | 319 | GTP-binding protein PH0525 {Pyrococcus horikoshii | 88.63 | |
| d1u94a1 | 263 | RecA protein, ATPase-domain {Escherichia coli [Tax | 88.62 | |
| d1ko7a2 | 169 | HPr kinase HprK C-terminal domain {Staphylococcus | 88.61 | |
| d1c1ya_ | 167 | Rap1A {Human (Homo sapiens) [TaxId: 9606]} | 88.58 | |
| d1cr2a_ | 277 | Gene 4 protein (g4p, DNA primase), helicase domain | 88.58 | |
| d1gsia_ | 208 | Thymidylate kinase {Mycobacterium tuberculosis [Ta | 88.52 | |
| d2g6ba1 | 170 | Rab26 {Human (Homo sapiens) [TaxId: 9606]} | 88.52 | |
| d2bcgy1 | 194 | GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi | 88.49 | |
| d1svsa1 | 195 | Transducin (alpha subunit) {Rat (Rattus norvegicus | 88.26 | |
| d1e0sa_ | 173 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 88.25 | |
| d1iqpa2 | 231 | Replication factor C {Archaeon Pyrococcus furiosus | 88.21 | |
| d1c1ya_ | 167 | Rap1A {Human (Homo sapiens) [TaxId: 9606]} | 88.21 | |
| d1gsia_ | 208 | Thymidylate kinase {Mycobacterium tuberculosis [Ta | 88.13 | |
| d1jwyb_ | 306 | Dynamin G domain {Dictyostelium discoideum [TaxId: | 88.03 | |
| d1m7ba_ | 179 | RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | 88.0 | |
| d1f5na2 | 277 | Interferon-induced guanylate-binding protein 1 (GB | 87.81 | |
| d1sxjd2 | 237 | Replication factor C2 {Baker's yeast (Saccharomyce | 87.72 | |
| d1ni3a1 | 296 | YchF GTP-binding protein N-terminal domain {Fissio | 87.65 | |
| d1e0sa_ | 173 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 87.65 | |
| d1jwyb_ | 306 | Dynamin G domain {Dictyostelium discoideum [TaxId: | 87.6 | |
| d1ixsb2 | 239 | Holliday junction helicase RuvB {Thermus thermophi | 87.55 | |
| d2ngra_ | 191 | CDC42 {Human (Homo sapiens) [TaxId: 9606]} | 87.53 | |
| d1kk1a3 | 195 | Initiation factor eIF2 gamma subunit, N-terminal ( | 87.49 | |
| d2atxa1 | 185 | RhoQ {Human (Homo sapiens) [TaxId: 9606]} | 87.46 | |
| d2bv3a2 | 276 | Elongation factor G (EF-G), N-terminal (G) domain | 87.4 | |
| d2akab1 | 299 | Dynamin G domain {Rat (Rattus norvegicus) [TaxId: | 87.31 | |
| d2c78a3 | 204 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 87.27 | |
| d1r6bx3 | 315 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 87.11 | |
| d1e32a2 | 258 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 87.1 | |
| d1sxjb2 | 224 | Replication factor C4 {Baker's yeast (Saccharomyce | 87.07 | |
| d1yksa1 | 140 | YFV helicase domain {Yellow fever virus [TaxId: 11 | 86.88 | |
| d1g41a_ | 443 | HslU {Haemophilus influenzae [TaxId: 727]} | 86.81 | |
| d2jdid3 | 276 | Central domain of beta subunit of F1 ATP synthase | 86.69 | |
| d2ngra_ | 191 | CDC42 {Human (Homo sapiens) [TaxId: 9606]} | 86.65 | |
| d1deka_ | 241 | Deoxynucleoside monophosphate kinase {Bacteriophag | 86.47 | |
| d1azta2 | 221 | Transducin (alpha subunit) {Cow (Bos taurus) [TaxI | 86.41 | |
| d1sxjc2 | 227 | Replication factor C3 {Baker's yeast (Saccharomyce | 86.3 | |
| d1g41a_ | 443 | HslU {Haemophilus influenzae [TaxId: 727]} | 86.26 | |
| d1f5na2 | 277 | Interferon-induced guanylate-binding protein 1 (GB | 86.15 | |
| d2qn6a3 | 205 | Initiation factor eIF2 gamma subunit, N-terminal ( | 86.05 | |
| d1nlfa_ | 274 | Hexameric replicative helicase repA {Escherichia c | 86.02 | |
| d2jdid3 | 276 | Central domain of beta subunit of F1 ATP synthase | 86.01 | |
| d1svma_ | 362 | Papillomavirus large T antigen helicase domain {Si | 85.99 | |
| d1sxjb2 | 224 | Replication factor C4 {Baker's yeast (Saccharomyce | 85.47 | |
| d1svsa1 | 195 | Transducin (alpha subunit) {Rat (Rattus norvegicus | 85.46 | |
| d1zcba2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 85.36 | |
| d1d2na_ | 246 | Hexamerization domain of N-ethylmalemide-sensitive | 85.3 | |
| d1fx0a3 | 276 | Central domain of alpha subunit of F1 ATP synthase | 85.02 | |
| d1sxjc2 | 227 | Replication factor C3 {Baker's yeast (Saccharomyce | 84.78 | |
| d1r7ra3 | 265 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 84.57 | |
| d1e9ra_ | 433 | Bacterial conjugative coupling protein TrwB {Esche | 84.48 | |
| d1azta2 | 221 | Transducin (alpha subunit) {Cow (Bos taurus) [TaxI | 84.22 | |
| d1svma_ | 362 | Papillomavirus large T antigen helicase domain {Si | 83.99 | |
| d1g8pa_ | 333 | ATPase subunit of magnesium chelatase, BchI {Rhodo | 83.85 | |
| d1w44a_ | 321 | NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | 83.76 | |
| d1mo6a1 | 269 | RecA protein, ATPase-domain {Mycobacterium tubercu | 83.69 | |
| d1a1va1 | 136 | HCV helicase domain {Human hepatitis C virus (HCV) | 83.67 | |
| d1ni3a1 | 296 | YchF GTP-binding protein N-terminal domain {Fissio | 83.49 | |
| d1xp8a1 | 268 | RecA protein, ATPase-domain {Deinococcus radiodura | 83.41 | |
| d1wxqa1 | 319 | GTP-binding protein PH0525 {Pyrococcus horikoshii | 83.29 | |
| d2ocpa1 | 241 | Deoxyguanosine kinase {Human (Homo sapiens) [TaxId | 83.24 | |
| d1d2ea3 | 196 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 83.09 | |
| d1w5sa2 | 287 | CDC6-like protein APE0152, N-terminal domain {Aero | 83.03 | |
| d2ocpa1 | 241 | Deoxyguanosine kinase {Human (Homo sapiens) [TaxId | 82.86 | |
| d1qvra3 | 315 | ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 | 82.77 | |
| d2a5yb3 | 277 | CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI | 82.45 | |
| d1ixza_ | 247 | AAA domain of cell division protein FtsH {Thermus | 82.13 | |
| d1gkub1 | 237 | Helicase-like "domain" of reverse gyrase {Archaeon | 82.08 | |
| d1e32a2 | 258 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 82.0 | |
| d1sxje2 | 252 | Replication factor C5 {Baker's yeast (Saccharomyce | 81.98 | |
| d1yksa1 | 140 | YFV helicase domain {Yellow fever virus [TaxId: 11 | 81.45 | |
| d1jala1 | 278 | YchF GTP-binding protein N-terminal domain {Haemop | 81.09 | |
| d1l8qa2 | 213 | Chromosomal replication initiation factor DnaA {Aq | 80.92 | |
| d1w5sa2 | 287 | CDC6-like protein APE0152, N-terminal domain {Aero | 80.76 | |
| d1r6bx3 | 315 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 80.45 | |
| d2bcjq2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 80.1 |
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.9e-64 Score=541.25 Aligned_cols=240 Identities=48% Similarity=0.796 Sum_probs=232.1
Q ss_pred cEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcce
Q 000984 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKI 462 (1198)
Q Consensus 383 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i 462 (1198)
+|+|+||+|+|+.. .+++|+||||+|++||++|||||||||||||+++|+|+++|++|+|.+||+|+++++.+++|++|
T Consensus 1 eI~~~nvsf~Y~~~-~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~lr~~i 79 (241)
T d2pmka1 1 DITFRNIRFRYKPD-SPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQV 79 (241)
T ss_dssp EEEEEEEEEESSTT-SCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHE
T ss_pred CeEEEEEEEEeCCC-CcceEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCCCCEEEECCEEecccchhhhhceE
Confidence 48999999999754 46799999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEcCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhhccCCC
Q 000984 463 GLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPR 542 (1198)
Q Consensus 463 ~~v~Q~~~l~~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal~~~~~ 542 (1198)
+||||+|++|++||+|||.++.+..++++++.+++.+++.+++..+|+|++|.+|++|.+|||||||||||||||+++|+
T Consensus 80 ~~v~Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~t~i~~~g~~LSGGq~QRvalARal~~~p~ 159 (241)
T d2pmka1 80 GVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPK 159 (241)
T ss_dssp EEECSSCCCTTSBHHHHHCTTSTTCCHHHHHHHHHHHTCHHHHTTSTTGGGSBCSTTTTCCCHHHHHHHHHHHHHTTCCS
T ss_pred EEEecccccCCccccccccccCccccHHHHHHHHHHHhhHHHHHhhhcchhhhcCCCCCccCHHHHHHHhhhhhhhcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHhHHHHHHHHHHHhCCCeEEEEecCcchhhccCEEEEEeCCEEEEecChhhHhcCCCchhHHHHHHH
Q 000984 543 ILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVEDPEGAYSQLIRLQ 622 (1198)
Q Consensus 543 illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~ 622 (1198)
|||||||||+||+.+++.|.+.++++.+++|+|+||||++.++.||||+||++|+|+++|+|+||++++++.|+++++.|
T Consensus 160 ililDEpts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~~~D~i~vl~~G~Iv~~G~~~ell~~~~~~y~~l~~~Q 239 (241)
T d2pmka1 160 ILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQLQ 239 (241)
T ss_dssp EEEECCCCSCCCHHHHHHHHHHHHHHHTTSEEEEECSSGGGGTTSSEEEEEETTEEEEEECHHHHHHSTTCHHHHHHHHH
T ss_pred hhhhhCCccccCHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHhCCEEEEEECCEEEEECCHHHHHhCCCCHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999998788999999866
Q ss_pred h
Q 000984 623 E 623 (1198)
Q Consensus 623 ~ 623 (1198)
.
T Consensus 240 ~ 240 (241)
T d2pmka1 240 S 240 (241)
T ss_dssp C
T ss_pred c
Confidence 3
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=100.00 E-value=2.6e-64 Score=544.15 Aligned_cols=242 Identities=52% Similarity=0.818 Sum_probs=233.2
Q ss_pred CCcccEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHH
Q 000984 379 DIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWI 458 (1198)
Q Consensus 379 ~~~g~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~ 458 (1198)
..+|.|+|+||+|+|+++ .+++|+||||+|++||++||+||||||||||+++|+|+++|++|+|.+||.|+++++.+++
T Consensus 12 ~~~g~I~~~nvsf~Y~~~-~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~l 90 (255)
T d2hyda1 12 IKQGRIDIDHVSFQYNDN-EAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSL 90 (255)
T ss_dssp CCSCCEEEEEEEECSCSS-SCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSCHHHH
T ss_pred CCCCEEEEEEEEEEeCCC-CCcceeceEEEEcCCCEEEEECCCCCcHHHHHHHHHhcCCccccccccCCEEcccCCHHHh
Confidence 346889999999999864 4689999999999999999999999999999999999999999999999999999999999
Q ss_pred hcceEEEcCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhhc
Q 000984 459 RKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAIL 538 (1198)
Q Consensus 459 r~~i~~v~Q~~~l~~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal~ 538 (1198)
|++|+||+|+|++|++||+|||.||.+..++++++++++.+++++++..+|+|++|.+|++|.+|||||||||||||||+
T Consensus 91 r~~i~~v~Q~~~lf~~Ti~eNi~~g~~~~~~~~~~~al~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~QRi~iARal~ 170 (255)
T d2hyda1 91 RNQIGLVQQDNILFSDTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFL 170 (255)
T ss_dssp HHTEEEECSSCCCCSSBHHHHHGGGCSSCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHHHH
T ss_pred hheeeeeeccccCCCCCHHHHHhccCcCCCHHHHHHHHHHhCCHHHHHhccccccchhcCCCCCcCHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhCCCeEEEEecCcchhhccCEEEEEeCCEEEEecChhhHhcCCCchhHHH
Q 000984 539 KDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVEDPEGAYSQL 618 (1198)
Q Consensus 539 ~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~ 618 (1198)
++|+|||||||||+||+++++.|.+.|+++.+++|+|+||||++.+..||+|++|++|+|++.|+|+||+++ ++.|+++
T Consensus 171 ~~p~ililDEpts~LD~~t~~~i~~~l~~l~~~~TvI~itH~~~~~~~~D~ii~l~~G~iv~~G~~~eLl~~-~~~y~~l 249 (255)
T d2hyda1 171 NNPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLSTITHADKIVVIENGHIVETGTHRELIAK-QGAYEHL 249 (255)
T ss_dssp HCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSSGGGTTTCSEEEEEETTEEEEEECHHHHHHT-TSHHHHH
T ss_pred cCCCEEEEeCccccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEEECCEEEEECCHHHHHhC-CcHHHHH
Confidence 999999999999999999999999999999899999999999999999999999999999999999999997 7889999
Q ss_pred HHHH
Q 000984 619 IRLQ 622 (1198)
Q Consensus 619 ~~~~ 622 (1198)
++.|
T Consensus 250 ~~~Q 253 (255)
T d2hyda1 250 YSIQ 253 (255)
T ss_dssp HTTT
T ss_pred HHHc
Confidence 8654
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=1.5e-62 Score=532.01 Aligned_cols=242 Identities=50% Similarity=0.838 Sum_probs=231.7
Q ss_pred CCcccEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHH
Q 000984 379 DIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWI 458 (1198)
Q Consensus 379 ~~~g~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~ 458 (1198)
...|.|+|+||+|+|+.+ +.++|+||||+|++||++|||||||||||||+++|+|+++|++|+|.+||+|+++++.+++
T Consensus 9 ~~~g~I~~~nvsf~Y~~~-~~~~L~~isl~i~~Ge~iaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~ 87 (253)
T d3b60a1 9 RATGDLEFRNVTFTYPGR-EVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASL 87 (253)
T ss_dssp CCCCCEEEEEEEECSSSS-SCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBCHHHH
T ss_pred CCceEEEEEEEEEEeCCC-CCceeeceEEEEcCCCEEEEECCCCChHHHHHHHHhcccCCCccEEEECCcccchhhhhhh
Confidence 345789999999999864 4679999999999999999999999999999999999999999999999999999999999
Q ss_pred hcceEEEcCCCCCCcccHHHHHhcCCC-CCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhh
Q 000984 459 RKKIGLVSQEPVLFTGSIKDNIAYGKD-DATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAI 537 (1198)
Q Consensus 459 r~~i~~v~Q~~~l~~~ti~~Ni~~~~~-~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal 537 (1198)
|++|+||||+|++|++|+++|+.++.+ ..++++++++++.+++.++++.+|+|++|.++++|.+|||||||||||||||
T Consensus 88 r~~i~~v~Q~~~l~~~ti~~n~~~~~~~~~~~~~i~~a~~~~~l~~~i~~l~~gl~t~~~~~~~~LSGGqkQRvaiARal 167 (253)
T d3b60a1 88 RNQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARAL 167 (253)
T ss_dssp HHTEEEECSSCCCCSSBHHHHHHTTTTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHHH
T ss_pred hheEEEEeeccccCCcchhhhhhhcCcccCCHHHHHHHHHHHhHHHHHHhccccchhhhcCCCCCcCHHHHHHHHHHHHH
Confidence 999999999999999999999999864 5688999999999999999999999999999999999999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhCCCeEEEEecCcchhhccCEEEEEeCCEEEEecChhhHhcCCCchhHH
Q 000984 538 LKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVEDPEGAYSQ 617 (1198)
Q Consensus 538 ~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~ 617 (1198)
+++|+|||||||||+||+++++.|.+.|+++.+++|+|+||||++.+..||+|+||++|+|++.|+|+||+++ ++.|++
T Consensus 168 ~~~p~ililDEpts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~~~D~v~vl~~G~Iv~~G~~~eLl~~-~~~y~~ 246 (253)
T d3b60a1 168 LRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEQADEIVVVEDGIIVERGTHSELLAQ-HGVYAQ 246 (253)
T ss_dssp HHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHTTSEEEEECSCGGGTTTCSEEEEEETTEEEEEECHHHHHHH-TSSHHH
T ss_pred hcCCCEEEeccccccCCHHHHHHHHHHHHHhccCCEEEEEECCHHHHHhCCEEEEEECCEEEEECCHHHHHhC-CcHHHH
Confidence 9999999999999999999999999999999899999999999999999999999999999999999999987 788999
Q ss_pred HHHHH
Q 000984 618 LIRLQ 622 (1198)
Q Consensus 618 ~~~~~ 622 (1198)
+++.|
T Consensus 247 l~~~Q 251 (253)
T d3b60a1 247 LHKMQ 251 (253)
T ss_dssp HHHHT
T ss_pred HHHHc
Confidence 99865
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=5.3e-62 Score=527.01 Aligned_cols=241 Identities=41% Similarity=0.729 Sum_probs=227.9
Q ss_pred CCcccEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHH
Q 000984 379 DIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWI 458 (1198)
Q Consensus 379 ~~~g~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~ 458 (1198)
..+|.|+|+||+|+||++++.++|+||||+|++||+++||||||||||||+++|+|+++|++|+|.+||+|+++++..++
T Consensus 7 ~~~g~I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~li~gl~~p~~G~I~i~g~~i~~~~~~~~ 86 (251)
T d1jj7a_ 7 HLEGLVQFQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTGGQLLLDGKPLPQYEHRYL 86 (251)
T ss_dssp CCCCCEEEEEEEECCTTSTTCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHH
T ss_pred cccceEEEEEEEEECCCCCCCEeEeceEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCcCEEEECCEecchhhhHHH
Confidence 34678999999999987666789999999999999999999999999999999999999999999999999999999999
Q ss_pred hcceEEEcCCCCCCcccHHHHHhcCC-CCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhh
Q 000984 459 RKKIGLVSQEPVLFTGSIKDNIAYGK-DDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAI 537 (1198)
Q Consensus 459 r~~i~~v~Q~~~l~~~ti~~Ni~~~~-~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal 537 (1198)
|++|+||+|+|++|++||+||+.++. +..+.+++..+++.+++.+++..+|+|++|.++++|.+|||||||||||||||
T Consensus 87 r~~i~~v~Q~~~lf~~tv~eni~~g~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~i~~~~~~LSGGqkQRvaiARal 166 (251)
T d1jj7a_ 87 HRQVAAVGQEPQVFGRSLQENIAYGLTQKPTMEEITAAAVKSGAHSFISGLPQGYDTEVDEAGSQLSGGQRQAVALARAL 166 (251)
T ss_dssp HHHEEEECSSCCCCSSBHHHHHHCSCSSCCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCCSSCSSSCHHHHHHHHHHHHH
T ss_pred HHHhhhccccccccCcchhhhhhhhhcccchHHHHHHHHHHHHHHHHHHhccccchhhHhccCccCChhHceEEEEeecc
Confidence 99999999999999999999999984 45677888999999999999999999999999999999999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhC--CCeEEEEecCcchhhccCEEEEEeCCEEEEecChhhHhcCCCchh
Q 000984 538 LKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVEDPEGAY 615 (1198)
Q Consensus 538 ~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~ 615 (1198)
+++|+|+|||||||+||+.++..+.+.|.++.+ ++|+|+||||++.++.||||++|++|+|+++|+|+||+++ ++.|
T Consensus 167 ~~~p~ililDEpTs~LD~~~~~~i~~~l~~l~~~~~~Tvi~itH~l~~~~~aDrI~vl~~G~iv~~Gt~~eLl~~-~~~y 245 (251)
T d1jj7a_ 167 IRKPCVLILDDATSALDANSQLQVEQLLYESPERYSRSVLLITQHLSLVEQADHILFLEGGAIREGGTHQQLMEK-KGCY 245 (251)
T ss_dssp TTCCSEEEEESTTTTCCHHHHHHHHHHHHTCGGGGGCEEEEECSCHHHHHTCSEEEEEETTEEEEEECHHHHHHH-TSHH
T ss_pred ccCCcEEEecCcCcccChhhHHHHHHHHHHHhhhcCCEEEEEeCCHHHHHhCCEEEEEECCEEEEECCHHHHHhC-CcHH
Confidence 999999999999999999999999999988654 7999999999999999999999999999999999999987 6889
Q ss_pred HHHHH
Q 000984 616 SQLIR 620 (1198)
Q Consensus 616 ~~~~~ 620 (1198)
++|++
T Consensus 246 ~~l~~ 250 (251)
T d1jj7a_ 246 WAMVQ 250 (251)
T ss_dssp HHHHC
T ss_pred HHHhc
Confidence 88874
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Probab=100.00 E-value=7.3e-62 Score=522.97 Aligned_cols=236 Identities=45% Similarity=0.763 Sum_probs=225.2
Q ss_pred EEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcceE
Q 000984 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIG 463 (1198)
Q Consensus 384 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~ 463 (1198)
|+++||+|+|++ .+++|+||||+|++||++||+||||||||||+++|+|+++|++|+|.+||.|+++++.+++|++|+
T Consensus 2 le~knvsf~Y~~--~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 79 (242)
T d1mv5a_ 2 LSARHVDFAYDD--SEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIG 79 (242)
T ss_dssp EEEEEEEECSSS--SSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCC
T ss_pred EEEEEEEEECCC--CCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHHhhCCCCCEEEECCEEeccccHHHHHhheE
Confidence 799999999974 357999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCCCCCCcccHHHHHhcCC-CCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhhccCCC
Q 000984 464 LVSQEPVLFTGSIKDNIAYGK-DDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPR 542 (1198)
Q Consensus 464 ~v~Q~~~l~~~ti~~Ni~~~~-~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal~~~~~ 542 (1198)
||||+|++|++||+||+.++. +..++++++++++.+++.+++..+|+|++|.+|++|.+|||||||||||||||+++|+
T Consensus 80 ~v~Q~~~lf~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~LSGGqkQRv~iARal~~~p~ 159 (242)
T d1mv5a_ 80 FVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPK 159 (242)
T ss_dssp EECCSSCCCCEEHHHHTTSCTTSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCS
T ss_pred EEccccccCCcchhhheecccccccchhhHHHHHHHHHhhhhhccCcccccccccCCCCCCCHHHHHHHHHHHHHhcCCC
Confidence 999999999999999999874 4578899999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHhHHHHHHHHHHHhCCCeEEEEecCcchhhccCEEEEEeCCEEEEecChhhHhcCCCchhHHHHHHH
Q 000984 543 ILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVEDPEGAYSQLIRLQ 622 (1198)
Q Consensus 543 illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~ 622 (1198)
|||||||||+||+.+++.+.+.|+++.+++|+|+||||++.+..||||++|++|+|++.|+|+||+++ ++.|+++++.|
T Consensus 160 ililDEpts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~~~D~i~vl~~G~iv~~G~~~eLl~~-~~~y~~l~~~Q 238 (242)
T d1mv5a_ 160 ILMLDEATASLDSESESMVQKALDSLMKGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVAT-HPLYAKYVSEQ 238 (242)
T ss_dssp EEEEECCSCSSCSSSCCHHHHHHHHHHTTSEEEEECCSHHHHHHCSEEEEEETTEECCCSCHHHHHHH-CHHHHHHHHCC
T ss_pred EEEecCCccccCHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHhCCEEEEEECCEEEEECCHHHHHhC-ChHHHHHHHHH
Confidence 99999999999999999999999999899999999999999999999999999999999999999987 78899888643
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=7.3e-52 Score=454.98 Aligned_cols=218 Identities=28% Similarity=0.484 Sum_probs=195.9
Q ss_pred ccEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcc
Q 000984 382 GDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKK 461 (1198)
Q Consensus 382 g~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~ 461 (1198)
+.|.|+|++|. ++|+|+||||+|++||++||+||||||||||+++|+|+++|++|+|.++| +
T Consensus 37 ~~i~~~~~~~~-----g~pvL~~isl~i~~Ge~vaivG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g-------------~ 98 (281)
T d1r0wa_ 37 NNVSFSHLCLV-----GNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSG-------------R 98 (281)
T ss_dssp ---CHHHHHHT-----TCEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEECCS-------------C
T ss_pred CcEEEEEcCCC-----CCeEEeCeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCcCCCcEEEECC-------------E
Confidence 34555555432 35799999999999999999999999999999999999999999999998 7
Q ss_pred eEEEcCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhhccCC
Q 000984 462 IGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDP 541 (1198)
Q Consensus 462 i~~v~Q~~~l~~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal~~~~ 541 (1198)
|+|+||+||+|++||+|||.|+.. .++.+++.+++.+++.+++..+|+|+++.++++|.+|||||||||+|||||+++|
T Consensus 99 i~~v~Q~~~l~~~tv~eni~~~~~-~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~LSgGqkQRv~lARaL~~~p 177 (281)
T d1r0wa_ 99 VSFCSQFSWIMPGTIKENIIFGVS-YDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDA 177 (281)
T ss_dssp EEEECSSCCCCSEEHHHHHTTTSC-CCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTCTTSCHHHHHHHHHHHHHHSCC
T ss_pred EEEEeccccccCceeecccccccc-ccchHHHHHHHHHHhHHHHHhchhhhhhhhhhhccCCCHHHHHHHHHHHHHHhCc
Confidence 999999999999999999998854 6788899999999999999999999999999999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHhHHHHHHH-HHHHhCCCeEEEEecCcchhhccCEEEEEeCCEEEEecChhhHhcCCCchhHHHH
Q 000984 542 RILLLDEATSALDAESEKVVQEA-LDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVEDPEGAYSQLI 619 (1198)
Q Consensus 542 ~illlDe~ts~lD~~~~~~i~~~-i~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~ 619 (1198)
+|||||||||+||+.+++.+.+. +....+++|+|+||||++.++.||||++|++|+|++.|+|+||++. .+.|...+
T Consensus 178 ~illLDEPts~LD~~~~~~i~~~~~~~~~~~~tvi~itH~~~~l~~aDrI~vl~~G~i~~~Gt~~eL~~~-~~~~~~~~ 255 (281)
T d1r0wa_ 178 DLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTSKMEHLRKADKILILHQGSSYFYGTFSELQSL-RPDFSSKL 255 (281)
T ss_dssp SEEEEESCCCSSCHHHHHHHHHHCCCCCTTTSEEEEECSCHHHHHTCSEEEEEETTEEEEEECHHHHHHH-CHHHHHHH
T ss_pred cchhhcCccccCCHHHHHHHHHHHHHHhhCCCEEEEEechHHHHHhCCEEEEEECCEEEEECCHHHHhcc-CcHHHHHH
Confidence 99999999999999998887765 5555678999999999999999999999999999999999999875 45565443
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=100.00 E-value=1.1e-48 Score=414.35 Aligned_cols=222 Identities=27% Similarity=0.459 Sum_probs=187.9
Q ss_pred cEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcce
Q 000984 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKI 462 (1198)
Q Consensus 383 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i 462 (1198)
.|+++|++++|+ +..+|+||||+|++||+++|+||||||||||+++|.|+++|++|+|.++|+|+.+.+.. |++|
T Consensus 6 ~I~v~nlsk~yg---~~~al~~vsl~v~~Ge~~~liGpsGaGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~~~~~--~r~i 80 (239)
T d1v43a3 6 EVKLENLTKRFG---NFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPK--DRNI 80 (239)
T ss_dssp CEEEEEEEEEET---TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGG--GGTE
T ss_pred eEEEEEEEEEEC---CEEEEcceeEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEEcceecccCCcc--cceE
Confidence 499999999996 35799999999999999999999999999999999999999999999999999988764 5689
Q ss_pred EEEcCCCCCC-cccHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhhcc
Q 000984 463 GLVSQEPVLF-TGSIKDNIAYGKDD--ATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILK 539 (1198)
Q Consensus 463 ~~v~Q~~~l~-~~ti~~Ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal~~ 539 (1198)
|||||+|.+| +.||+||+.|+... .+.++..+. +.+.++.+ |++.........||||||||++|||||..
T Consensus 81 g~v~Q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~-----~~~~l~~~--~l~~~~~~~~~~LSGGq~QRvaiAraL~~ 153 (239)
T d1v43a3 81 SMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKR-----VRWAAELL--QIEELLNRYPAQLSGGQRQRVAVARAIVV 153 (239)
T ss_dssp EEEEC------CCCHHHHHHTTCC--CCCHHHHHHH-----HHHHHHHT--TCGGGTTSCTTTCCSSCHHHHHHHHHHTT
T ss_pred EEEeechhhcccchHHHHHHHHHHHcCCCHHHHHHH-----HHHHHHHc--CChhhhcCChhhCCHHHHHHHHHHhhhcc
Confidence 9999999999 47999999987532 233333322 12334444 66667788889999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHhHHHHHHHHHHHhC--CCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChhhHhcCCCchhH
Q 000984 540 DPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVEDPEGAYS 616 (1198)
Q Consensus 540 ~~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~ 616 (1198)
+|+|||||||||+||+.+...+.+.++++.+ ++|+|+|||+++.+.. ||||++|++|+|++.|+++|+.+++...|.
T Consensus 154 ~P~iLllDEPts~LD~~~~~~i~~ll~~l~~~~g~tii~vTHd~~~a~~~~dri~vm~~G~iv~~G~~~el~~~P~~~~~ 233 (239)
T d1v43a3 154 EPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYLRPNSVFV 233 (239)
T ss_dssp CCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHCCSBHHH
T ss_pred CCCceeecCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCCCCHHH
Confidence 9999999999999999999999999988743 7999999999999866 999999999999999999999988655443
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Probab=100.00 E-value=1.9e-48 Score=409.71 Aligned_cols=214 Identities=29% Similarity=0.516 Sum_probs=187.2
Q ss_pred EEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcceE
Q 000984 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIG 463 (1198)
Q Consensus 384 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~ 463 (1198)
|+++|++++|++ .+|+||||+|++||+++|+||||||||||+++|.|+++|++|+|.+||+|+.+.+.. |++||
T Consensus 2 i~v~nlsk~y~~----~aL~~vs~~i~~Ge~~~liGpsGaGKSTll~~l~Gl~~p~sG~I~~~G~~i~~~~~~--~r~ig 75 (229)
T d3d31a2 2 IEIESLSRKWKN----FSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPE--KHDIA 75 (229)
T ss_dssp EEEEEEEEECSS----CEEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCHH--HHTCE
T ss_pred EEEEEEEEEeCC----EEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCcCCCCCEEEEccEeccccchh--Hhcce
Confidence 789999999952 389999999999999999999999999999999999999999999999999988765 67899
Q ss_pred EEcCCCCCCc-ccHHHHHhcCCC---CCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhhcc
Q 000984 464 LVSQEPVLFT-GSIKDNIAYGKD---DATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILK 539 (1198)
Q Consensus 464 ~v~Q~~~l~~-~ti~~Ni~~~~~---~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal~~ 539 (1198)
||+|+|.+|. .||+||+.|+.. ....+++.++++.. |+.........+||||||||++|||||+.
T Consensus 76 ~v~Q~~~l~~~~tV~enl~~~~~~~~~~~~~~~~~~l~~~-----------~l~~~~~~~~~~LSGG~~QRvaiAraL~~ 144 (229)
T d3d31a2 76 FVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDL-----------KIEHLLDRNPLTLSGGEQQRVALARALVT 144 (229)
T ss_dssp EECTTCCCCTTSCHHHHHHHHHHHHCCCCHHHHHHHHHHT-----------TCTTTTTSCGGGSCHHHHHHHHHHHHTTS
T ss_pred eeccccccCccccHHHHHHHHHhhccccHHHHHHHHHHHh-----------cchhhHhCChhhCCHHHhcchhhhhhhhc
Confidence 9999999995 699999987531 12345555555444 44444566677899999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHhHHHHHHHHHHHh--CCCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChhhHhcCCCch
Q 000984 540 DPRILLLDEATSALDAESEKVVQEALDRIM--VNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVEDPEGA 614 (1198)
Q Consensus 540 ~~~illlDe~ts~lD~~~~~~i~~~i~~~~--~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~~~~ 614 (1198)
+|++||||||||+||+.+.+.+.+.|+++. .+.|+|+|||+++.+.. ||||++|++|+|++.|+++|+++++...
T Consensus 145 ~P~iLllDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~vtHd~~~~~~~~drv~vm~~G~iv~~g~~~el~~~P~~~ 222 (229)
T d3d31a2 145 NPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEIFEKPVEG 222 (229)
T ss_dssp CCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHHHHHHHCSEEEEESSSCEEEEECHHHHHSSCCTT
T ss_pred cCCceeecCCCcCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCCCCH
Confidence 999999999999999999999999998864 37899999999998876 9999999999999999999999875543
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=100.00 E-value=7.6e-49 Score=415.60 Aligned_cols=225 Identities=29% Similarity=0.444 Sum_probs=190.7
Q ss_pred cEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcC---HHHHh
Q 000984 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQ---LQWIR 459 (1198)
Q Consensus 383 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~---~~~~r 459 (1198)
.|+++|++++|+.. +..+|+||||+|++||+++|+||||||||||+++|.|+++|++|+|.+||+++...+ ....|
T Consensus 3 ~i~v~nlsk~y~~g-~~~aL~~vsl~i~~Ge~~~iiG~sGsGKSTll~~i~gl~~p~~G~I~~~g~~i~~~~~~~~~~~r 81 (242)
T d1oxxk2 3 RIIVKNVSKVFKKG-KVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPED 81 (242)
T ss_dssp CEEEEEEEEEEGGG-TEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGGG
T ss_pred EEEEEeEEEEECCC-CEEEEeceEEEECCCCEEEEECCCCCcHHHHHHHHHcCcCCCCceEEECCEEeecCchhhcchhh
Confidence 48999999999643 357899999999999999999999999999999999999999999999999997654 44557
Q ss_pred cceEEEcCCCCCCc-ccHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHh
Q 000984 460 KKIGLVSQEPVLFT-GSIKDNIAYGKDD--ATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARA 536 (1198)
Q Consensus 460 ~~i~~v~Q~~~l~~-~ti~~Ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARa 536 (1198)
++||||+|+|.||. -||+|||.|+... .+.++..+.+ .+.++.+ |++........+||||||||++||||
T Consensus 82 r~ig~vfQ~~~L~p~ltv~eni~~~l~~~~~~~~~~~~~v-----~~~l~~~--gL~~~~~~~p~~LSGGqkQRvaiARa 154 (242)
T d1oxxk2 82 RKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRV-----EEVAKIL--DIHHVLNHFPRELSGAQQQRVALARA 154 (242)
T ss_dssp SCEEEEETTSCCCTTSCHHHHHHGGGTTSSCCHHHHHHHH-----HHHHHHT--TCGGGTTSCGGGSCHHHHHHHHHHHH
T ss_pred ccceEEeccccccccccHHHHhhhhhHhhcCCHHHHHHHH-----HHHHhhc--ChHhhhhCChhhCCHHHHhHHHHHhH
Confidence 88999999999995 5999999987542 2333322211 1223333 56556677778899999999999999
Q ss_pred hccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhC--CCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChhhHhcCCCc
Q 000984 537 ILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVEDPEG 613 (1198)
Q Consensus 537 l~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~~~ 613 (1198)
|..+|++||||||||+||+.+...+.+.|+++.+ +.|+|+|||+++.+.. ||||++|++|+|++.|+|+|+..++..
T Consensus 155 L~~~P~llllDEPt~~LD~~~~~~i~~~i~~l~~~~g~tvi~vTHd~~~~~~~~dri~vm~~G~iv~~g~~~el~~~P~~ 234 (242)
T d1oxxk2 155 LVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDLYDNPVS 234 (242)
T ss_dssp HTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSCSS
T ss_pred HhhcccceeecCCccCCCHHHHHHHHHHHHHHHhccCCEEEEEECCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCCCC
Confidence 9999999999999999999999999999988743 7899999999998855 999999999999999999999987654
Q ss_pred hh
Q 000984 614 AY 615 (1198)
Q Consensus 614 ~~ 615 (1198)
.|
T Consensus 235 ~~ 236 (242)
T d1oxxk2 235 IQ 236 (242)
T ss_dssp HH
T ss_pred HH
Confidence 44
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1e-48 Score=413.35 Aligned_cols=216 Identities=27% Similarity=0.476 Sum_probs=159.8
Q ss_pred EEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcceE
Q 000984 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIG 463 (1198)
Q Consensus 384 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~ 463 (1198)
|+++||+++|+ +..+|+||||+|++||+++|+||||||||||+++|.|+++|++|+|.++|+++.+.+.. |++||
T Consensus 1 Iev~nv~k~yg---~~~~l~~isl~i~~Gei~~liGpsGsGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~~~~~--~r~ig 75 (232)
T d2awna2 1 VQLQNVTKAWG---EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPA--ERGVG 75 (232)
T ss_dssp EEEEEEEEEET---TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEESSSCCTTSCGG--GTCEE
T ss_pred CEEEEEEEEEC---CEEEEeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCCEEEECCEECCCCchh--hceee
Confidence 78999999996 35699999999999999999999999999999999999999999999999999887754 57899
Q ss_pred EEcCCCCCCc-ccHHHHHhcCCCCC--C----HHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHh
Q 000984 464 LVSQEPVLFT-GSIKDNIAYGKDDA--T----TEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARA 536 (1198)
Q Consensus 464 ~v~Q~~~l~~-~ti~~Ni~~~~~~~--~----~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARa 536 (1198)
||||+|.+|. .||+||+.|+.... + ++++.++++..++. ........+||||||||++||||
T Consensus 76 ~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~l~-----------~~~~~~~~~LSGGqkQRvaiAra 144 (232)
T d2awna2 76 MVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLA-----------HLLDRKPKALSGGQRQRVAIGRT 144 (232)
T ss_dssp EECSSCCC---------------------CHHHHHHHHHHHHC--------------------------------CHHHH
T ss_pred eeccccccccchhHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCh-----------hhhhCChhhCCHHHHHHHHHHHH
Confidence 9999999994 69999999874321 1 13344444444443 33445567899999999999999
Q ss_pred hccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh--CCCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChhhHhcCCCc
Q 000984 537 ILKDPRILLLDEATSALDAESEKVVQEALDRIM--VNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVEDPEG 613 (1198)
Q Consensus 537 l~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~--~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~~~ 613 (1198)
|+.+|++|||||||++||+.+.+.+++.++++. .++|+|+|||+++.+.. ||||++|++|+|++.|+++|+++++..
T Consensus 145 L~~~P~illlDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~~~a~~~~dri~vm~~G~iv~~G~~~el~~~P~~ 224 (232)
T d2awna2 145 LVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYPAD 224 (232)
T ss_dssp HHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSCSB
T ss_pred HhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEeCHHHHHhCCCC
Confidence 999999999999999999999999999998864 47999999999998876 999999999999999999999987655
Q ss_pred hh
Q 000984 614 AY 615 (1198)
Q Consensus 614 ~~ 615 (1198)
.|
T Consensus 225 ~~ 226 (232)
T d2awna2 225 RF 226 (232)
T ss_dssp HH
T ss_pred HH
Confidence 44
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.6e-48 Score=413.94 Aligned_cols=220 Identities=31% Similarity=0.511 Sum_probs=187.9
Q ss_pred EEEEeEEEEcCCCCC-CccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHH---Hh
Q 000984 384 IELRDVYFSYPARPN-EQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQW---IR 459 (1198)
Q Consensus 384 i~~~~v~~~y~~~~~-~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~---~r 459 (1198)
|+++|++++|+.+.. ..+|+||||+|++||+++|+||||||||||+++|.|+.+|++|+|.++|+|+.+.+.++ +|
T Consensus 2 i~v~nlsk~y~~~~~~~~al~~vsl~i~~Ge~~~iiG~sGsGKSTLl~~i~Gl~~p~sG~I~~~g~~i~~~~~~~~~~~r 81 (240)
T d3dhwc1 2 IKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKAR 81 (240)
T ss_dssp EEEEEEEEEEECSSCEEEEEEEEEEEECSSCEEEEEESTTSSHHHHHHHHTTSSCCSEEEEEETTEEECTTCHHHHHHHH
T ss_pred EEEEeEEEEeCCCCeeEEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHcCCccccCCceEEcCeEeeeCChhhhhhhh
Confidence 789999999975432 25799999999999999999999999999999999999999999999999999887654 56
Q ss_pred cceEEEcCCCCCCc-ccHHHHHhcCCC--CCCH----HHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHh
Q 000984 460 KKIGLVSQEPVLFT-GSIKDNIAYGKD--DATT----EEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIA 532 (1198)
Q Consensus 460 ~~i~~v~Q~~~l~~-~ti~~Ni~~~~~--~~~~----~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~ 532 (1198)
++||||||+|.+|. -||+|||.++.. ..+. +++.+.++.+ |+..........||||||||++
T Consensus 82 r~ig~VfQ~~~l~~~~tv~eni~~~l~~~~~~~~~~~~~v~~~L~~v-----------gL~~~~~~~~~~LSGG~~QRva 150 (240)
T d3dhwc1 82 RQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLV-----------GLGDKHDSYPSNLSGGQKQRVA 150 (240)
T ss_dssp HHEEECCSSCCCCTTSBHHHHHHHHHHTTTCCTTHHHHHHHHHHHHH-----------STTTTTSSCBSCCCHHHHHHHH
T ss_pred ccccccccccccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHc-----------CCchhhhCChhhCCHHHHHHHH
Confidence 78999999999986 599999987421 1222 3344444444 4444456667789999999999
Q ss_pred HHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhC--CCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChhhHhc
Q 000984 533 IARAILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVE 609 (1198)
Q Consensus 533 lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~ 609 (1198)
|||||..+|++|||||||++||+.+...+.+.|+++.+ +.|+|+|||+++.+.. ||||++|++|+|++.|+++|+++
T Consensus 151 iAraL~~~P~lLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHdl~~~~~~~dri~vl~~G~iv~~G~~~ei~~ 230 (240)
T d3dhwc1 151 IARALASNPKVLLCDEATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVFS 230 (240)
T ss_dssp HHHHHHTCCSEEEEESGGGSSCHHHHHHHHHHHHHHHHHHCCEEEEEBSCHHHHHHHCSEEEEEETTEEEEEEETTTTTC
T ss_pred HhhhhccCCCeEEeccccccCCHHHhhHHHHHHHHHHhccCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 99999999999999999999999999999999988643 7999999999999876 99999999999999999999988
Q ss_pred CCCch
Q 000984 610 DPEGA 614 (1198)
Q Consensus 610 ~~~~~ 614 (1198)
++...
T Consensus 231 ~P~~~ 235 (240)
T d3dhwc1 231 HPKTP 235 (240)
T ss_dssp SSCCT
T ss_pred CCCCh
Confidence 75433
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Probab=100.00 E-value=2.2e-48 Score=412.88 Aligned_cols=220 Identities=28% Similarity=0.493 Sum_probs=188.1
Q ss_pred cEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHH----H
Q 000984 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQW----I 458 (1198)
Q Consensus 383 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~----~ 458 (1198)
.|+++||+++|++ ..+|+||||+|++||+++|+||||||||||+++|.|+++|++|+|.++|.++.+.+... .
T Consensus 3 ~i~v~nl~k~yg~---~~al~~vsl~i~~Ge~~~liG~sGaGKSTll~~i~gl~~p~sG~I~~~g~~i~~~~~~~~~~~~ 79 (240)
T d1g2912 3 GVRLVDVWKVFGE---VTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPK 79 (240)
T ss_dssp EEEEEEEEEEETT---EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCGG
T ss_pred cEEEEeEEEEECC---EEEEcceeeEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCCEEEECCEEecccchhhhcccc
Confidence 4899999999963 56999999999999999999999999999999999999999999999999997765443 3
Q ss_pred hcceEEEcCCCCCCc-ccHHHHHhcCCC--CCCHHH----HHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHH
Q 000984 459 RKKIGLVSQEPVLFT-GSIKDNIAYGKD--DATTEE----IRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRI 531 (1198)
Q Consensus 459 r~~i~~v~Q~~~l~~-~ti~~Ni~~~~~--~~~~~~----~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri 531 (1198)
|++||||+|+|.+|. .||+||+.++.. ..+.++ +.+.++.+ |+.........+||||||||+
T Consensus 80 ~r~ig~v~Q~~~L~~~ltV~eni~~~~~~~~~~~~e~~~~v~~~l~~~-----------~l~~~~~~~p~~LSGGqkQRv 148 (240)
T d1g2912 80 DRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELL-----------GLTELLNRKPRELSGGQRQRV 148 (240)
T ss_dssp GSSEEEECSCCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH-----------TCGGGTTCCGGGSCHHHHHHH
T ss_pred cccceecccchhhcchhhhhHhhhhhHHHcCCCHHHHHHHHHHHHHHc-----------CChhHhcCChhhCCHHHHHHH
Confidence 678999999999995 599999998632 123333 33333333 344445666778999999999
Q ss_pred hHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhC--CCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChhhHh
Q 000984 532 AIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLV 608 (1198)
Q Consensus 532 ~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~ 608 (1198)
+|||||..+|++|||||||++||+.+...+.+.++++.+ +.|+|+|||+++.+.. ||||++|++|+|++.|+++|++
T Consensus 149 ~IAraL~~~P~iLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHd~~~~~~~~drv~vm~~G~iv~~G~~~el~ 228 (240)
T d1g2912 149 ALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEVY 228 (240)
T ss_dssp HHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred HHHHHHhcCCCEEEecCCCcccCHHHHHHHHHHHHHHHhccCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 999999999999999999999999999999999988743 8999999999999876 9999999999999999999999
Q ss_pred cCCCchhH
Q 000984 609 EDPEGAYS 616 (1198)
Q Consensus 609 ~~~~~~~~ 616 (1198)
.++...|-
T Consensus 229 ~~P~~~~~ 236 (240)
T d1g2912 229 DKPANTFV 236 (240)
T ss_dssp HSCSBHHH
T ss_pred hCCCCHHH
Confidence 87655543
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=2.2e-48 Score=410.92 Aligned_cols=213 Identities=30% Similarity=0.471 Sum_probs=178.7
Q ss_pred EEEEeEEEEcCCCCC-CccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHH----
Q 000984 384 IELRDVYFSYPARPN-EQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWI---- 458 (1198)
Q Consensus 384 i~~~~v~~~y~~~~~-~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~---- 458 (1198)
|+++||+++|+.... ..+|+|+||+|++||+++|+||||||||||+++|.|+++|++|+|.+||+++...+.+++
T Consensus 2 I~i~nlsk~y~~~~~~~~al~~isl~i~~Ge~~~iiG~sGsGKSTLl~~i~gl~~p~sG~I~~~g~~i~~~~~~~~~~~r 81 (230)
T d1l2ta_ 2 IKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIR 81 (230)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHH
T ss_pred EEEEeEEEEeCCCCeeEEEEeceEEEEcCCCEEEEECCCCCCcchhhHhccCCCCCCcceeEECCEEcCcCChhhcchhh
Confidence 789999999975321 247999999999999999999999999999999999999999999999999999987765
Q ss_pred hcceEEEcCCCCCCc-ccHHHHHhcCC-----CCCCHHHH-HHHHHHhcHHHHHHhCCCCccc-hhcCCCCCCChHHHHH
Q 000984 459 RKKIGLVSQEPVLFT-GSIKDNIAYGK-----DDATTEEI-RVATELANAAKFIDKLPQGIDT-LVGEHGTQLSGGQKQR 530 (1198)
Q Consensus 459 r~~i~~v~Q~~~l~~-~ti~~Ni~~~~-----~~~~~~~~-~~~~~~~~~~~~i~~l~~g~~t-~v~~~g~~lSgGqkqr 530 (1198)
|++||||+|+|.+|. -||+||+.++. +..+.++. .++.+. ++.+ |+.. .......+||||||||
T Consensus 82 ~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~------l~~~--~L~~~~~~~~p~~LSGGqkQR 153 (230)
T d1l2ta_ 82 RDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALEC------LKMA--ELEERFANHKPNQLSGGQQQR 153 (230)
T ss_dssp HHHEEEECTTCCCCTTSCHHHHHHHHHHTCCSSCCCHHHHHHHHHHH------HHHT--TCCGGGTTCCGGGSCHHHHHH
T ss_pred cceEEEEecchhhCcCccHHHHHhHHHHHhccCCCCHHHHHHHHHHH------HHhh--chhhhhhcCChhhCCHHHHHH
Confidence 357999999999884 69999999742 22333332 222222 2222 3332 2345567899999999
Q ss_pred HhHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhC--CCeEEEEecCcchhhccCEEEEEeCCEEEEecCh
Q 000984 531 IAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTH 604 (1198)
Q Consensus 531 i~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~ 604 (1198)
++|||||..+|++||||||||+||+.+...+.+.++++.+ ++|+|+|||+++.++.||||++|++|+|+++|++
T Consensus 154 vaIAraL~~~P~lLllDEPTs~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~~~a~~~drv~~m~~G~Iv~~g~~ 229 (230)
T d1l2ta_ 154 VAIARALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVEREEKL 229 (230)
T ss_dssp HHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEEECSCHHHHTTSSEEEEEETTEEEEEEEC
T ss_pred HHHHhhhhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHhhCCEEEEECCCHHHHHhCCEEEEEECCEEEEeccC
Confidence 9999999999999999999999999999999999998743 6899999999998888999999999999999875
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=8.9e-46 Score=400.12 Aligned_cols=221 Identities=29% Similarity=0.501 Sum_probs=185.9
Q ss_pred cEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcC--------
Q 000984 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQ-------- 454 (1198)
Q Consensus 383 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~-------- 454 (1198)
.|+++|++++|+ +.++|+||||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++...+
T Consensus 2 ~Lev~nl~k~yg---~~~al~~vs~~i~~GEi~~iiG~sGsGKSTLl~~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~ 78 (258)
T d1b0ua_ 2 KLHVIDLHKRYG---GHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKV 78 (258)
T ss_dssp CEEEEEEEEEET---TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEE
T ss_pred eEEEEEEEEEEC---CEEEEcceeeEEcCCCEEEEECCCCCcHHHHHHHHHcCccCCCCCEEECCEEeccCCccchhccc
Confidence 489999999995 356999999999999999999999999999999999999999999999999986543
Q ss_pred -----HHHHhcceEEEcCCCCCCc-ccHHHHHhcCC---CCCCHHH----HHHHHHHhcHHHHHHhCCCCccchh-cCCC
Q 000984 455 -----LQWIRKKIGLVSQEPVLFT-GSIKDNIAYGK---DDATTEE----IRVATELANAAKFIDKLPQGIDTLV-GEHG 520 (1198)
Q Consensus 455 -----~~~~r~~i~~v~Q~~~l~~-~ti~~Ni~~~~---~~~~~~~----~~~~~~~~~~~~~i~~l~~g~~t~v-~~~g 520 (1198)
...+|++||||+|+|.+|. .||+||+.++. ...+.++ +.++++.+ |+.... ....
T Consensus 79 ~~~~~~~~~r~~ig~vfQ~~~l~~~~tv~env~~~~~~~~~~~~~~~~~~~~~~l~~~-----------~l~~~~~~~~p 147 (258)
T d1b0ua_ 79 ADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKV-----------GIDERAQGKYP 147 (258)
T ss_dssp SCHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHT-----------TCCHHHHTSCG
T ss_pred ccHhHHHHHhcceEEEEechhhccchhcchhhhhhHHHhcCCCHHHHHHHHHHHHHHc-----------CCchhhhccCc
Confidence 2356789999999999985 69999998751 2233332 33333333 333322 3335
Q ss_pred CCCChHHHHHHhHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh-CCCeEEEEecCcchhhc-cCEEEEEeCCEE
Q 000984 521 TQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRN-ADMIAVIHRGKI 598 (1198)
Q Consensus 521 ~~lSgGqkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i 598 (1198)
.+||||||||++|||||..+|++|||||||++||+.+.+.+.+.|+++. +++|+|+|||+++.+.. ||||+||++|+|
T Consensus 148 ~~LSGG~~QRv~iAraL~~~P~llilDEPT~gLD~~~~~~i~~ll~~l~~~g~til~vtHdl~~~~~~adri~vm~~G~i 227 (258)
T d1b0ua_ 148 VHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKI 227 (258)
T ss_dssp GGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHHHHHHHCSEEEEEETTEE
T ss_pred ccccHHHHHHHHHHHHHhcCCCEEEeccccccCCHHHHHHHHHhhhhhcccCCceEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 6899999999999999999999999999999999999999999998765 46899999999999876 999999999999
Q ss_pred EEecChhhHhcCCCchhHH
Q 000984 599 VEKGTHSKLVEDPEGAYSQ 617 (1198)
Q Consensus 599 ~~~g~~~~l~~~~~~~~~~ 617 (1198)
++.|+++|+++++...|.+
T Consensus 228 v~~g~~~ev~~~P~~~~~~ 246 (258)
T d1b0ua_ 228 EEEGDPEQVFGNPQSPRLQ 246 (258)
T ss_dssp EEEECHHHHHHSCCSHHHH
T ss_pred EEEcCHHHHHhCCCCHHHH
Confidence 9999999999886655543
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Probab=100.00 E-value=2.6e-45 Score=393.17 Aligned_cols=219 Identities=24% Similarity=0.416 Sum_probs=184.4
Q ss_pred cEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHh-cc
Q 000984 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIR-KK 461 (1198)
Q Consensus 383 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r-~~ 461 (1198)
.|+++|++++|+ +..+|+||||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.|+.+.+.+..+ ..
T Consensus 6 ~Lev~~l~k~yg---~~~al~~vs~~i~~Gei~~liGpnGaGKSTl~~~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~r~g 82 (240)
T d1ji0a_ 6 VLEVQSLHVYYG---AIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMG 82 (240)
T ss_dssp EEEEEEEEEEET---TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHTT
T ss_pred EEEEeeEEEEEC---CEEEEeeeeEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEecccccccccHHHHHHhc
Confidence 589999999996 35699999999999999999999999999999999999999999999999999998877764 45
Q ss_pred eEEEcCCCCCCc-ccHHHHHhcCCCCC-CHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhhcc
Q 000984 462 IGLVSQEPVLFT-GSIKDNIAYGKDDA-TTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILK 539 (1198)
Q Consensus 462 i~~v~Q~~~l~~-~ti~~Ni~~~~~~~-~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal~~ 539 (1198)
++|+||++.+|. -|++||+.++.... ..+...+..+.. +..+ .++.........+||||||||++|||||+.
T Consensus 83 i~~~~q~~~l~~~ltv~en~~~~~~~~~~~~~~~~~~~~~-----~~~~-~~l~~~~~~~~~~LSGG~~Qrv~iAraL~~ 156 (240)
T d1ji0a_ 83 IALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWI-----FSLF-PRLKERLKQLGGTLSGGEQQMLAIGRALMS 156 (240)
T ss_dssp EEEECSSCCCCTTSBHHHHHHGGGTTCCCSSHHHHHHHHH-----HHHC-HHHHTTTTSBSSSSCHHHHHHHHHHHHHTT
T ss_pred ccccCcccccCCcccHHHHHHHHHHhcCCHHHHHHHHHHH-----HHHh-hChHHHHhCchhhCCHHHHHHHHHHHHHHh
Confidence 999999999996 59999998754221 222222222111 1111 133444556667899999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHhHHHHHHHHHHHh-CCCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChhhHhcC
Q 000984 540 DPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVED 610 (1198)
Q Consensus 540 ~~~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 610 (1198)
+|++|||||||++||+.+.+.+.+.|+++. +++|+|++||+++.+.. ||||++|++|+|++.|+++|+.++
T Consensus 157 ~P~lLllDEPt~gLD~~~~~~i~~~i~~l~~~g~til~~tH~l~~~~~~~drv~vl~~G~iv~~g~~~el~~~ 229 (240)
T d1ji0a_ 157 RPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNALGALKVAHYGYVLETGQIVLEGKASELLDN 229 (240)
T ss_dssp CCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEEEHHHHHTC
T ss_pred CCCEeeecCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHhcC
Confidence 999999999999999999999999998874 46899999999998765 999999999999999999999865
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=4.9e-45 Score=390.00 Aligned_cols=218 Identities=28% Similarity=0.450 Sum_probs=188.0
Q ss_pred ccEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcc
Q 000984 382 GDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKK 461 (1198)
Q Consensus 382 g~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~ 461 (1198)
|.|+++|++++|+. +++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.|+.+ ..+.+|+.
T Consensus 1 gaI~v~nl~k~yg~---~~vl~~vs~~v~~Gei~glvG~nGaGKSTLl~~l~G~~~p~~G~i~i~G~~i~~-~~~~~~~~ 76 (238)
T d1vpla_ 1 GAVVVKDLRKRIGK---KEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVE-EPHEVRKL 76 (238)
T ss_dssp CCEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTT-CHHHHHTT
T ss_pred CCEEEEeEEEEECC---EEEEccceeEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECcEeccc-ChHHHHhh
Confidence 57999999999963 569999999999999999999999999999999999999999999999999987 45678999
Q ss_pred eEEEcCCCCCCc-ccHHHHHhcCCC--CCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhhc
Q 000984 462 IGLVSQEPVLFT-GSIKDNIAYGKD--DATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAIL 538 (1198)
Q Consensus 462 i~~v~Q~~~l~~-~ti~~Ni~~~~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal~ 538 (1198)
++||||++.+|. .|++||+.|... ..+.+++++..+.. ++.+ |++....+...+||||||||++|||||+
T Consensus 77 i~~vpq~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~-----l~~~--~l~~~~~~~~~~lSgG~~qrv~iA~al~ 149 (238)
T d1vpla_ 77 ISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERA-----TEIA--GLGEKIKDRVSTYSKGMVRKLLIARALM 149 (238)
T ss_dssp EEEECTTCCCCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHH-----HHHH--CCGGGGGSBGGGCCHHHHHHHHHHHHHT
T ss_pred EeEeeeccccCCCccHHHHHHHHHHhcCCCHHHHHHHHHHH-----HHhC--CCHHHHhhhhhhCCHHHHHHHHHHHHHh
Confidence 999999998884 699999976321 12344444433321 2222 5666667777889999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh-CCCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChhhHhcC
Q 000984 539 KDPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVED 610 (1198)
Q Consensus 539 ~~~~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 610 (1198)
.+|+||||||||++||+.+.+.+.+.++++. +++|+|++||+++.+.. ||||++|++|+|++.|+++++.++
T Consensus 150 ~~p~illLDEPt~gLD~~~~~~i~~~i~~~~~~g~tii~~tH~l~~~~~~~drv~vl~~G~iv~~g~~~el~~~ 223 (238)
T d1vpla_ 150 VNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELKER 223 (238)
T ss_dssp TCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHTTTCSEEEEEETTEEEEEEEHHHHHHH
T ss_pred cCCCEEEecCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhc
Confidence 9999999999999999999999999998864 57999999999999875 999999999999999999999754
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=100.00 E-value=8.7e-45 Score=383.24 Aligned_cols=220 Identities=32% Similarity=0.515 Sum_probs=185.8
Q ss_pred EEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcceE
Q 000984 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIG 463 (1198)
Q Consensus 384 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~ 463 (1198)
+++ ++..+|++ ..+ |+||+++ ||+++|+||||||||||+++|.|+++|++|+|.++|+|+.+++.. |++||
T Consensus 3 l~v-~~~k~~g~----~~~-~vs~~~~-~e~~~liGpnGaGKSTll~~i~Gl~~p~~G~I~~~G~~i~~~~~~--~r~ig 73 (240)
T d2onka1 3 LKV-RAEKRLGN----FRL-NVDFEMG-RDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPE--RRGIG 73 (240)
T ss_dssp EEE-EEEEEETT----EEE-EEEEEEC-SSEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCTT--TSCCB
T ss_pred EEE-EEEEEECC----EEE-EEEEEeC-CEEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCcCCHH--HcCce
Confidence 455 45677742 123 7999995 689999999999999999999999999999999999999988765 67899
Q ss_pred EEcCCCCCCc-ccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhhccCCC
Q 000984 464 LVSQEPVLFT-GSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPR 542 (1198)
Q Consensus 464 ~v~Q~~~l~~-~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal~~~~~ 542 (1198)
||||+|.+|. -||+|||.|+....+..+.++. +.+.++.+ |+..........||||||||++|||||+.+|+
T Consensus 74 ~v~Q~~~l~~~ltV~enl~~~l~~~~~~~~~~~-----v~~~l~~~--gl~~~~~~~~~~LSGG~kQRvaiAral~~~P~ 146 (240)
T d2onka1 74 FVPQDYALFPHLSVYRNIAYGLRNVERVERDRR-----VREMAEKL--GIAHLLDRKPARLSGGERQRVALARALVIQPR 146 (240)
T ss_dssp CCCSSCCCCTTSCHHHHHHTTCTTSCHHHHHHH-----HHHHHHTT--TCTTTTTCCGGGSCHHHHHHHHHHHHHTTCCS
T ss_pred eeccchhhcccchhhHhhhhhhcccCHHHHHHH-----HHHHHHhc--CcHhhhhCChhhCCHHHHHHHHHHHHHhccCC
Confidence 9999999995 6999999998655555444321 22344444 67667788888999999999999999999999
Q ss_pred EEEEeCCCCCCCHHhHHHHHHHHHHHhC--CCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChhhHhcCCCchhHHHH
Q 000984 543 ILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVEDPEGAYSQLI 619 (1198)
Q Consensus 543 illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~ 619 (1198)
+||||||||+||+.+...+.+.|+++.+ +.|+|+|||+++.+.. ||||++|++|+|++.|+++|+.+.++...++++
T Consensus 147 illlDEPts~LD~~~~~~i~~~i~~l~~~~g~tvi~vtHd~~~~~~~adri~vm~~G~ii~~G~~~el~~~~~~~v~~fl 226 (240)
T d2onka1 147 LLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAMLADEVAVMLNGRIVEKGKLKELFSAKNGEVAEFL 226 (240)
T ss_dssp SBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSCCSSHHHHG
T ss_pred ceEecCccccCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEEecHHHHhcCCCHHHHHHh
Confidence 9999999999999999999999988743 7899999999998876 999999999999999999999987665544444
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=1.6e-44 Score=391.33 Aligned_cols=216 Identities=23% Similarity=0.390 Sum_probs=184.0
Q ss_pred cEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhc-c
Q 000984 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRK-K 461 (1198)
Q Consensus 383 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~-~ 461 (1198)
-++++|++++|+. .++|+||||++++||+++|+||||||||||+++|+|+++|++|+|.++|.|+...++++.++ .
T Consensus 4 iL~v~nlsk~yg~---~~aL~~vs~~v~~Gei~~liG~nGaGKSTLl~~i~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~g 80 (254)
T d1g6ha_ 4 ILRTENIVKYFGE---FKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYG 80 (254)
T ss_dssp EEEEEEEEEEETT---EEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHT
T ss_pred eEEEEEEEEEECC---eEEEcceEEEECCCCEEEEECCCCCcHHHHHHHHHCCCcCCCcEEEECCEeccchhHHHHHHhc
Confidence 4899999999963 56999999999999999999999999999999999999999999999999999999888754 5
Q ss_pred eEEEcCCCCCC-cccHHHHHhcCCCC----------------CCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCC
Q 000984 462 IGLVSQEPVLF-TGSIKDNIAYGKDD----------------ATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLS 524 (1198)
Q Consensus 462 i~~v~Q~~~l~-~~ti~~Ni~~~~~~----------------~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lS 524 (1198)
|+|+||+|.+| +.||+||+.++... ...+...++. +.++.+ |++........+||
T Consensus 81 i~~v~Q~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~l~~~--~l~~~~~~~~~~LS 152 (254)
T d1g6ha_ 81 IVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAF------KILEFL--KLSHLYDRKAGELS 152 (254)
T ss_dssp EEECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHH------HHHHHT--TCGGGTTSBGGGSC
T ss_pred CCccCCccccCCCCeeeeeeeehhhhccccchhhhhhhcccccHHHHHHHHH------HHHHhc--CcchhccCchhhCC
Confidence 99999999888 56999999886321 1111122221 222222 55555566677899
Q ss_pred hHHHHHHhHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh-CCCeEEEEecCcchhhc-cCEEEEEeCCEEEEec
Q 000984 525 GGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKG 602 (1198)
Q Consensus 525 gGqkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g 602 (1198)
||||||++|||||..+|++|||||||++||+.+.+.+.+.|+++. +++|+|+|||+++.+.. ||||+||++|+|++.|
T Consensus 153 gG~~Qrv~iAraL~~~P~llilDEPt~gLD~~~~~~i~~~i~~l~~~g~til~vsHdl~~~~~~~Drv~vm~~G~iv~~g 232 (254)
T d1g6ha_ 153 GGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEG 232 (254)
T ss_dssp HHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCSTTGGGCSEEEEEETTEEEEEE
T ss_pred cHHHHHHHHHHHHHhCcCchhhcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHHhCCEEEEEeCCEEEEEe
Confidence 999999999999999999999999999999999999999998874 57999999999999865 9999999999999999
Q ss_pred ChhhHhc
Q 000984 603 THSKLVE 609 (1198)
Q Consensus 603 ~~~~l~~ 609 (1198)
+++|+.+
T Consensus 233 ~~~e~~~ 239 (254)
T d1g6ha_ 233 RGEEEIK 239 (254)
T ss_dssp ESHHHHH
T ss_pred cHHHHhh
Confidence 9998754
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=2.7e-40 Score=353.31 Aligned_cols=208 Identities=24% Similarity=0.382 Sum_probs=180.1
Q ss_pred EEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcceE
Q 000984 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIG 463 (1198)
Q Consensus 384 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~ 463 (1198)
++++||+++| .|+||||+|++||++||+||||||||||+++|.|+. |.+|+|.++|.++...+.+.++...+
T Consensus 4 l~~~dv~~~~-------~l~~isl~I~~Gei~~iiG~nGaGKSTLl~~l~Gl~-~~~G~I~~~g~~i~~~~~~~~~~~~~ 75 (231)
T d1l7vc_ 4 MQLQDVAEST-------RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGKGSIQFAGQPLEAWSATKLALHRA 75 (231)
T ss_dssp EEEEEECCTT-------TSCSEEEEEETTCEEECBCCTTSSHHHHHHHHHTSC-CCSSEEEESSSBGGGSCHHHHHHHEE
T ss_pred EEEECcccCc-------eecCEEEEEcCCCEEEEECCCCCcHHHHHHHHhCCC-CCceEEEECCEECCcCCHHHHHhhce
Confidence 7899997543 699999999999999999999999999999999976 68999999999999999999999999
Q ss_pred EEcCCCC-CCcccHHHHHhcCCCCCC-HHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhhcc--
Q 000984 464 LVSQEPV-LFTGSIKDNIAYGKDDAT-TEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILK-- 539 (1198)
Q Consensus 464 ~v~Q~~~-l~~~ti~~Ni~~~~~~~~-~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal~~-- 539 (1198)
|++|+.. .|..++.+|+.++..... .+.+.++++.. |++..++....+||||||||++||||+++
T Consensus 76 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~-----------~l~~~~~~~~~~LSgG~~Qrv~iA~al~~~~ 144 (231)
T d1l7vc_ 76 YLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGAL-----------ALDDKLGRSTNQLSGGEWQRVRLAAVVLQIT 144 (231)
T ss_dssp EECSCCCCCSSCBHHHHHHHHCSCTTCHHHHHHHHHHT-----------TCTTTTTSBGGGCCHHHHHHHHHHHHHHHHC
T ss_pred eeeccccCCccccHHHHhhhccchhhHHHHHHHHHHhc-----------CCHhHhCcChhhcCHHHHHHHHHHHHHHhhC
Confidence 9999886 467899999987655433 34444444433 45556677778899999999999999997
Q ss_pred -----CCCEEEEeCCCCCCCHHhHHHHHHHHHHHh-CCCeEEEEecCcchhh-ccCEEEEEeCCEEEEecChhhHhcC
Q 000984 540 -----DPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKGTHSKLVED 610 (1198)
Q Consensus 540 -----~~~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~~ 610 (1198)
+|+|+||||||++||+.+.+.+.+.++++. +++|+|++||+++.+. .||||++|++|+|++.|+++|++.+
T Consensus 145 p~~~p~p~llllDEPt~gLD~~~~~~i~~~i~~l~~~g~tii~vtHdl~~~~~~~dri~vl~~G~iv~~G~~~ev~~~ 222 (231)
T d1l7vc_ 145 PQANPAGQLLLLDEPMNSLDVAQQSALDKILSALCQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVLTP 222 (231)
T ss_dssp TTTCTTCCEEEESSCSTTCCHHHHHHHHHHHHHHHHTTCEEEECCCCHHHHHHHCSBCCBEETTEECCCSBHHHHSCH
T ss_pred cccCCCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHCCEEEEEECCEEEEECCHHHHhCC
Confidence 779999999999999999999999998864 5789999999999865 4999999999999999999999764
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Probab=100.00 E-value=3.6e-38 Score=329.33 Aligned_cols=191 Identities=23% Similarity=0.430 Sum_probs=156.1
Q ss_pred cEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcce
Q 000984 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKI 462 (1198)
Q Consensus 383 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i 462 (1198)
.|+++|++++|+ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||+++.+ +|.++
T Consensus 2 ~lev~~ls~~y~----~~vl~~is~~i~~Gei~~l~G~NGsGKSTLl~~i~gl~~p~~G~I~~~g~~i~~-----~~~~i 72 (200)
T d1sgwa_ 2 KLEIRDLSVGYD----KPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITK-----VKGKI 72 (200)
T ss_dssp EEEEEEEEEESS----SEEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGG-----GGGGE
T ss_pred eEEEEEEEEEeC----CeEEeceEEEEcCCCEEEEECCCCChHHHHHHHHhcccccCCCEEEECCEehhH-----hcCcE
Confidence 489999999993 369999999999999999999999999999999999999999999999998754 57789
Q ss_pred EEEcCCCCCCc-ccHHHHHhcC----CCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhh
Q 000984 463 GLVSQEPVLFT-GSIKDNIAYG----KDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAI 537 (1198)
Q Consensus 463 ~~v~Q~~~l~~-~ti~~Ni~~~----~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal 537 (1198)
+|+||++.++. -|+++|+.+. ....+++++.++++..++. ++ .++..+||||||||++||||+
T Consensus 73 ~~~~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~--------~~----~~~~~~LSgG~~qrv~ia~al 140 (200)
T d1sgwa_ 73 FFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALESVEVL--------DL----KKKLGELSQGTIRRVQLASTL 140 (200)
T ss_dssp EEECSSCCCCTTSBHHHHHHHHHHHTTCCCCHHHHHHHHHHTTCC--------CT----TSBGGGSCHHHHHHHHHHHHT
T ss_pred EEEeecccCCCCcCHHHHHHHHHHhcCCccCHHHHHHHHHHcCCc--------cc----ccccCcCCCcHHHHHHHHHHH
Confidence 99999998874 5999998642 2334566666655543221 12 233447999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhCCCeEEEEecCcchhhccCEEEEEeC
Q 000984 538 LKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHR 595 (1198)
Q Consensus 538 ~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~~d~i~~l~~ 595 (1198)
+++|+++||||||++||+++.+.+.+.+.+..+++++++++|+- .+..||++.+|.+
T Consensus 141 ~~~~~llllDEPt~gLD~~~~~~i~~~l~~~~~~~~~~ii~~~~-~l~~~D~~~~l~~ 197 (200)
T d1sgwa_ 141 LVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSRE-ELSYCDVNENLHK 197 (200)
T ss_dssp TSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESS-CCTTSSEEEEGGG
T ss_pred hcCCCEEEEcCcccccCHHHHHHHHHHHHHHHhCCCEEEEEEec-hhhhcchhhheee
Confidence 99999999999999999999999999998876655444444442 3467999988753
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=100.00 E-value=2e-36 Score=325.61 Aligned_cols=139 Identities=44% Similarity=0.739 Sum_probs=131.6
Q ss_pred cCCcccEEEeeeeEECCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHH
Q 000984 1037 EDVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKW 1116 (1198)
Q Consensus 1037 ~~~~G~I~f~nVsf~Y~~~~~~~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~~i~l~~ 1116 (1198)
+..+|+|+|+||+|+|+++ +.+||+||||+|++||++|||||||||||||+++|.|+|+|++|+|.|||+|+++++.++
T Consensus 11 ~~~~g~I~~~nvsf~Y~~~-~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~ 89 (255)
T d2hyda1 11 EIKQGRIDIDHVSFQYNDN-EAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGS 89 (255)
T ss_dssp CCCSCCEEEEEEEECSCSS-SCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSCHHH
T ss_pred CCCCCEEEEEEEEEEeCCC-CCcceeceEEEEcCCCEEEEECCCCCcHHHHHHHHHhcCCccccccccCCEEcccCCHHH
Confidence 3457899999999999854 457999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcceeccccccccccHHHHHhcCCCCCCCHHHHHHHHHHcchHHHHHhccccccceee
Q 000984 1117 LRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQVRTSRLL 1177 (1198)
Q Consensus 1117 LR~~IsiV~Qdp~LF~gTIreNI~~g~~~~~tdeei~~Al~~A~l~dfI~~LP~g~dt~v~ 1177 (1198)
||++|++|||+|.||++||||||.+|+ ++++++++++|++.+++++||.+||+||||.+-
T Consensus 90 lr~~i~~v~Q~~~lf~~Ti~eNi~~g~-~~~~~~~~~~al~~~~l~~~i~~lp~gl~t~i~ 149 (255)
T d2hyda1 90 LRNQIGLVQQDNILFSDTVKENILLGR-PTATDEEVVEAAKMANAHDFIMNLPQGYDTEVG 149 (255)
T ss_dssp HHHTEEEECSSCCCCSSBHHHHHGGGC-SSCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCC
T ss_pred hhheeeeeeccccCCCCCHHHHHhccC-cCCCHHHHHHHHHHhCCHHHHHhccccccchhc
Confidence 999999999999999999999999995 478999999999999999999999999999863
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=2e-35 Score=315.38 Aligned_cols=133 Identities=34% Similarity=0.658 Sum_probs=127.3
Q ss_pred cEEEeeeeEECCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHhhc
Q 000984 1042 EIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQM 1121 (1198)
Q Consensus 1042 ~I~f~nVsf~Y~~~~~~~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~~i~l~~LR~~I 1121 (1198)
+|+|+||+|+|+++ +++||+||||+|++||++|||||||||||||+++|+|+|+|++|+|+|||+|+++++.+++|++|
T Consensus 1 eI~~~nvsf~Y~~~-~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~lr~~i 79 (241)
T d2pmka1 1 DITFRNIRFRYKPD-SPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQV 79 (241)
T ss_dssp EEEEEEEEEESSTT-SCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHE
T ss_pred CeEEEEEEEEeCCC-CcceEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCCCCEEEECCEEecccchhhhhceE
Confidence 59999999999754 45799999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeccccccccccHHHHHhcCCCCCCCHHHHHHHHHHcchHHHHHhcccccccee
Q 000984 1122 GLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQVRTSRL 1176 (1198)
Q Consensus 1122 siV~Qdp~LF~gTIreNI~~g~~~~~tdeei~~Al~~A~l~dfI~~LP~g~dt~v 1176 (1198)
++|||||+||++||+|||++++ +++++++++++++.++++++|..+|+|++|.+
T Consensus 80 ~~v~Q~~~lf~~Ti~eNi~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~~~~t~i 133 (241)
T d2pmka1 80 GVVLQDNVLLNRSIIDNISLAN-PGMSVEKVIYAAKLAGAHDFISELREGYNTIV 133 (241)
T ss_dssp EEECSSCCCTTSBHHHHHCTTS-TTCCHHHHHHHHHHHTCHHHHTTSTTGGGSBC
T ss_pred EEEecccccCCccccccccccC-ccccHHHHHHHHHHHhhHHHHHhhhcchhhhc
Confidence 9999999999999999999995 47899999999999999999999999999976
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=8e-35 Score=313.90 Aligned_cols=140 Identities=46% Similarity=0.749 Sum_probs=132.1
Q ss_pred cCCcccEEEeeeeEECCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHH
Q 000984 1037 EDVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKW 1116 (1198)
Q Consensus 1037 ~~~~G~I~f~nVsf~Y~~~~~~~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~~i~l~~ 1116 (1198)
+...|+|+|+||+|+|+++ +.++|+||||+|++||++|||||||||||||+++|+|+|+|++|+|+|||+|++++++++
T Consensus 8 ~~~~g~I~~~nvsf~Y~~~-~~~~L~~isl~i~~Ge~iaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~ 86 (253)
T d3b60a1 8 DRATGDLEFRNVTFTYPGR-EVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLAS 86 (253)
T ss_dssp SCCCCCEEEEEEEECSSSS-SCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBCHHH
T ss_pred CCCceEEEEEEEEEEeCCC-CCceeeceEEEEcCCCEEEEECCCCChHHHHHHHHhcccCCCccEEEECCcccchhhhhh
Confidence 3456899999999999854 457999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcceeccccccccccHHHHHhcCCCCCCCHHHHHHHHHHcchHHHHHhccccccceee
Q 000984 1117 LRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQVRTSRLL 1177 (1198)
Q Consensus 1117 LR~~IsiV~Qdp~LF~gTIreNI~~g~~~~~tdeei~~Al~~A~l~dfI~~LP~g~dt~v~ 1177 (1198)
+|++|++|||||.||++|+++|+.+|+....+++++++|++.+++++||+.||+|+||.+-
T Consensus 87 ~r~~i~~v~Q~~~l~~~ti~~n~~~~~~~~~~~~~i~~a~~~~~l~~~i~~l~~gl~t~~~ 147 (253)
T d3b60a1 87 LRNQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIG 147 (253)
T ss_dssp HHHTEEEECSSCCCCSSBHHHHHHTTTTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCC
T ss_pred hhheEEEEeeccccCCcchhhhhhhcCcccCCHHHHHHHHHHHhHHHHHHhccccchhhhc
Confidence 9999999999999999999999999976678999999999999999999999999999763
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=8e-35 Score=313.50 Aligned_cols=139 Identities=41% Similarity=0.717 Sum_probs=132.3
Q ss_pred CCcccEEEeeeeEECCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHH
Q 000984 1038 DVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWL 1117 (1198)
Q Consensus 1038 ~~~G~I~f~nVsf~Y~~~~~~~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~~i~l~~L 1117 (1198)
..+|.|+|+||+|+||++++.+||+||||+|++||++|||||||||||||+++|+|+|+|++|+|+|||+|+++++.+++
T Consensus 7 ~~~g~I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~li~gl~~p~~G~I~i~g~~i~~~~~~~~ 86 (251)
T d1jj7a_ 7 HLEGLVQFQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTGGQLLLDGKPLPQYEHRYL 86 (251)
T ss_dssp CCCCCEEEEEEEECCTTSTTCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHH
T ss_pred cccceEEEEEEEEECCCCCCCEeEeceEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCcCEEEECCEecchhhhHHH
Confidence 35789999999999987666679999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcceeccccccccccHHHHHhcCCCCCCCHHHHHHHHHHcchHHHHHhcccccccee
Q 000984 1118 RQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQVRTSRL 1176 (1198)
Q Consensus 1118 R~~IsiV~Qdp~LF~gTIreNI~~g~~~~~tdeei~~Al~~A~l~dfI~~LP~g~dt~v 1176 (1198)
|++|++|||+|+||++||+|||.+|..+..++++++++++.+++++++..||+|++|.+
T Consensus 87 r~~i~~v~Q~~~lf~~tv~eni~~g~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~i 145 (251)
T d1jj7a_ 87 HRQVAAVGQEPQVFGRSLQENIAYGLTQKPTMEEITAAAVKSGAHSFISGLPQGYDTEV 145 (251)
T ss_dssp HHHEEEECSSCCCCSSBHHHHHHCSCSSCCCHHHHHHHHHHHTCHHHHHTSTTGGGCBC
T ss_pred HHHhhhccccccccCcchhhhhhhhhcccchHHHHHHHHHHHHHHHHHHhccccchhhH
Confidence 99999999999999999999999996557899999999999999999999999999976
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Probab=99.98 E-value=1.1e-33 Score=302.74 Aligned_cols=133 Identities=36% Similarity=0.657 Sum_probs=126.6
Q ss_pred EEEeeeeEECCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHhhcc
Q 000984 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMG 1122 (1198)
Q Consensus 1043 I~f~nVsf~Y~~~~~~~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~~i~l~~LR~~Is 1122 (1198)
|+++||||+|++. ++||+||||+|+|||++|||||||||||||+++|+|+|+|++|+|+|||+|+++++.+++|++|+
T Consensus 2 le~knvsf~Y~~~--~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 79 (242)
T d1mv5a_ 2 LSARHVDFAYDDS--EQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIG 79 (242)
T ss_dssp EEEEEEEECSSSS--SCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCC
T ss_pred EEEEEEEEECCCC--CceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHHhhCCCCCEEEECCEEeccccHHHHHhheE
Confidence 7999999999743 46999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeccccccccccHHHHHhcCCCCCCCHHHHHHHHHHcchHHHHHhccccccceee
Q 000984 1123 LVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQVRTSRLL 1177 (1198)
Q Consensus 1123 iV~Qdp~LF~gTIreNI~~g~~~~~tdeei~~Al~~A~l~dfI~~LP~g~dt~v~ 1177 (1198)
+|||||.||++||+|||.++..+..++++++++++.+++++++..+|+|++|.+-
T Consensus 80 ~v~Q~~~lf~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 134 (242)
T d1mv5a_ 80 FVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVG 134 (242)
T ss_dssp EECCSSCCCCEEHHHHTTSCTTSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEES
T ss_pred EEccccccCCcchhhheecccccccchhhHHHHHHHHHhhhhhccCccccccccc
Confidence 9999999999999999999865678999999999999999999999999999863
|
| >d3b60a2 f.37.1.1 (A:10-328) Multidrug resistance ABC transporter MsbA, N-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: ABC transporter transmembrane region superfamily: ABC transporter transmembrane region family: ABC transporter transmembrane region domain: Multidrug resistance ABC transporter MsbA, N-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=99.96 E-value=3.1e-27 Score=266.78 Aligned_cols=316 Identities=19% Similarity=0.236 Sum_probs=289.9
Q ss_pred hhHhhhhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000984 706 PTRRLAYLNKPEIPVILAGTIAAMANGVILPIYGLLISSVIETFFKPPHELKKDSRFWALIYLALGAGSFLLSPAQSYFF 785 (1198)
Q Consensus 706 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 (1198)
.+++++.+.+++++.++.++++.++.+++.+..+++++.++|......+ .....++.++++++.++..++.+++.++.
T Consensus 3 ~~krl~~~~~~~k~~l~~~~i~~~~~~~~~~~~~~~~~~~id~~~~~~~--~~~l~~~~~~~~~~~~~~~i~~~~~~~~~ 80 (319)
T d3b60a2 3 TFRRLWPTIAPFKAGLIVAGIALILNAASDTFMLSLLKPLLDDGFGKTD--RSVLLWMPLVVIGLMILRGITSYISSYCI 80 (319)
T ss_dssp HHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHSSTTSTT--HHHHHHSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC--HHHHHHHHHHHHHHHHHhhhhhhhhhhhh
Confidence 4567788888999999999998888888889999999999987654322 12233345566677778889999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCcccccccCCCChhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 000984 786 AVAGNKLIQRIRSMCFEKVIHMEVSWFDEPEHSSGAIGARLSADAASVRALVGDALARIVQNISTAAAGLIIAFTASWQL 865 (1198)
Q Consensus 786 ~~~~~~~~~~Lr~~l~~~ll~~p~~fFd~~~~~~G~i~~r~s~D~~~i~~~l~~~l~~~i~~~~~~i~~li~~~~~~~~l 865 (1198)
...+.++..++|+++++|++++|++||+ ++++|++++|+++|++.+...+...+..++..++.+++.+++++..+|++
T Consensus 81 ~~~~~~~~~~l~~~~~~~ll~~~~~~~~--~~~~g~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l 158 (319)
T d3b60a2 81 SWVSGKVVMTMRRRLFGHMMGMPVAFFD--KQSTGTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQL 158 (319)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCCSTHHH--HSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTT
T ss_pred hhhhhccccchhhHHHHhhcccchhhcc--ccccccccccccccccccccccccccchhhhhhhhhhhHHHHHHhhhccc
Confidence 9999999999999999999999999999 58999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhchhHHHHHhcchHHHHHHHHHHhhhHHHHhHHHHHH
Q 000984 866 ALIILVMLPLIGVSGYTQMKFMKGFSADAKMKYEEASQVANDAVGSIRTVASFCAEEKVMQLYKKKCEAPMKTGIRQGMV 945 (1198)
Q Consensus 866 ~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~~ 945 (1198)
++++++++|+..++.....++.++..++.++..++.++.+.|.++|+++||+|+.|+.+.+++++..++..+...+....
T Consensus 159 ~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 238 (319)
T d3b60a2 159 SIILVVLAPIVSIAIRVVSKRFRSISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNKMRLQGMKMVSA 238 (319)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHhhcCCceeeehhccchhhhhhhhhhhhhhHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhcCCCC
Q 000984 946 SGGGFGASFFLLFAFYAASFYAGARLVEDGKATFSDVFKVFFSLTMTAIGISQSSSFSSDSNKAKSAAASIFAIIDRESK 1025 (1198)
Q Consensus 946 ~~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~~t~g~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~~~~~ 1025 (1198)
.....+...++..+..++++++|++++.+|.+|+|+++++..+...+..|+..+......++++.++.+|+.+++|.|||
T Consensus 239 ~~~~~~~~~~~~~~~~~~~l~~g~~~~~~g~it~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~s~~Ri~elld~~~E 318 (319)
T d3b60a2 239 SSISDPIIQLIASLALAFVLYAASFPSVMDSLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDSEQE 318 (319)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSSSTTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCS
T ss_pred HHhcccchhhhhhhhhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 99999998888888899999999999999999999999999999999999999999999999999999999999998765
|
| >d2hyda2 f.37.1.1 (A:1-323) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: ABC transporter transmembrane region superfamily: ABC transporter transmembrane region family: ABC transporter transmembrane region domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=99.96 E-value=4.5e-27 Score=266.12 Aligned_cols=317 Identities=16% Similarity=0.168 Sum_probs=283.6
Q ss_pred hHhhhhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhhhh-----HHHHHHHHHHHHHHHHHHHHH
Q 000984 707 TRRLAYLNKPEIPVILAGTIAAMANGVILPIYGLLISSVIETFFKPPHELKKDS-----RFWALIYLALGAGSFLLSPAQ 781 (1198)
Q Consensus 707 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~ 781 (1198)
.|+++.+.+++++.++.++++.++.+++....+++++.++|............. ......++++.++..++.+++
T Consensus 2 lKrl~~~~k~~k~~~~~~~~~~~~~~~~~~~~p~l~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 81 (323)
T d2hyda2 2 IKRYLQFVKPYKYRIFATIIVGIIKFGIPMLIPLLIKYAIDGVINNHALTTDEKVHHLTIAIGIALFIFVIVRPPIEFIR 81 (323)
T ss_dssp HHHHHHHHGGGHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHHHHHHTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356777788999999988888888888888889999999998765422111111 111223344556677788889
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCcccccccCCCChhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000984 782 SYFFAVAGNKLIQRIRSMCFEKVIHMEVSWFDEPEHSSGAIGARLSADAASVRALVGDALARIVQNISTAAAGLIIAFTA 861 (1198)
Q Consensus 782 ~~~~~~~~~~~~~~Lr~~l~~~ll~~p~~fFd~~~~~~G~i~~r~s~D~~~i~~~l~~~l~~~i~~~~~~i~~li~~~~~ 861 (1198)
.++..+.+.+...++|+++++|++++|++||+ ++++|++++|+++|++.+++.+...+..++..++.+++.+++++++
T Consensus 82 ~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~--~~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~ 159 (323)
T d2hyda2 82 QYLAQWTSNKILYDIRKKLYNHLQALSARFYA--NNQVGQVISRVINDVEQTKDFILTGLMNIWLDCITIIIALSIMFFL 159 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHH--TSCHHHHHHHHHHHHHHTHHHHHCCCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHhhhhhcccccccc--cccccccccccchhhhhhccchhhhhhhcchhhhhhhhhhhhhhhh
Confidence 99999999999999999999999999999999 5889999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhchhHHHHHhcchHHHHHHHHHHhhhHHHHhHH
Q 000984 862 SWQLALIILVMLPLIGVSGYTQMKFMKGFSADAKMKYEEASQVANDAVGSIRTVASFCAEEKVMQLYKKKCEAPMKTGIR 941 (1198)
Q Consensus 862 ~~~l~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIraf~~e~~~~~~~~~~~~~~~~~~~~ 941 (1198)
+|+++++.++++|+..+......++.++..++.++..++.++.+.|.++|+++||+|+.|+.+.++|++..++..+...+
T Consensus 160 ~~~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~k 239 (323)
T d2hyda2 160 DVKLTLAALFIFPFYILTVYVFFGRLRKLTRERSQALAEVQGFLHERVQGISVVKSFAIEDNEAKNFDKKNTNFLTRALK 239 (323)
T ss_dssp CTTTHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHhhhcccccchhHHHHHHHHHHHHHHHHHhcCCchhhhHhhhccchhhhhcccccccchhhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhc
Q 000984 942 QGMVSGGGFGASFFLLFAFYAASFYAGARLVEDGKATFSDVFKVFFSLTMTAIGISQSSSFSSDSNKAKSAAASIFAIID 1021 (1198)
Q Consensus 942 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~~t~g~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~ 1021 (1198)
..............+..+..++++++|++++.+|.+|+|+++++..+......|+..+......++++.++++|+.+++|
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~s~g~l~~~~~~~~~l~~~l~~l~~~~~~~~~~~~s~~Ri~elLd 319 (323)
T d2hyda2 240 HTRWNAYSFAAINTVTDIGPIIVIGVGAYLAISGSITVGTLAAFVGYLELLFGPLRRLVASFTTLTQSFASMDRVFQLID 319 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHTHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HhhhhhhccccccccchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCC
Q 000984 1022 RESK 1025 (1198)
Q Consensus 1022 ~~~~ 1025 (1198)
++||
T Consensus 320 ~e~e 323 (323)
T d2hyda2 320 EDYD 323 (323)
T ss_dssp CCCS
T ss_pred CCCC
Confidence 7754
|
| >d3b60a2 f.37.1.1 (A:10-328) Multidrug resistance ABC transporter MsbA, N-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: ABC transporter transmembrane region superfamily: ABC transporter transmembrane region family: ABC transporter transmembrane region domain: Multidrug resistance ABC transporter MsbA, N-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=99.92 E-value=1.8e-22 Score=227.30 Aligned_cols=316 Identities=18% Similarity=0.283 Sum_probs=268.0
Q ss_pred hHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000984 45 PFYKLFTFADSADTALMIIGSIGAIGNGLCLPLMTLLFGDLINTFGDNQNNSETVDKVSKVAVKFVYLGIGSGIASFLQV 124 (1198)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 124 (1198)
.++++++|.++.++. +++++++.++.+++.+..|++++.++|......+. +......+.++++.++..++.+++.
T Consensus 3 ~~krl~~~~~~~k~~-l~~~~i~~~~~~~~~~~~~~~~~~~id~~~~~~~~----~~l~~~~~~~~~~~~~~~i~~~~~~ 77 (319)
T d3b60a2 3 TFRRLWPTIAPFKAG-LIVAGIALILNAASDTFMLSLLKPLLDDGFGKTDR----SVLLWMPLVVIGLMILRGITSYISS 77 (319)
T ss_dssp HHHHHHHHHGGGHHH-HHHHHHHHHHHHHHHHHHHHHHTHHHHSSTTSTTH----HHHHHSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCH----HHHHHHHHHHHHHHHHhhhhhhhhh
Confidence 466788888766543 34455556666677777888888888865433221 2222333445556667778888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCChhhhhccCCcchHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 000984 125 TCWMITGERQATRIRGLYLKTILRQDVAFFDNETNTGEVVGRMSGDTVLIQDAMGEKVGKFLQLMATFLGGFLIAFIKGW 204 (1198)
Q Consensus 125 ~~~~~~~~~~~~~lr~~~~~~ll~~~~~~f~~~~~~G~i~~r~s~D~~~i~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~ 204 (1198)
++....+.+...++|.+++++++++|+.+|++. ++|++++|+++|++.+.+.+...+..++..+..+++.+++++..+|
T Consensus 78 ~~~~~~~~~~~~~l~~~~~~~ll~~~~~~~~~~-~~g~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 156 (319)
T d3b60a2 78 YCISWVSGKVVMTMRRRLFGHMMGMPVAFFDKQ-STGTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSW 156 (319)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTCCSTHHHHS-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred hhhhhhhhccccchhhHHHHhhcccchhhcccc-ccccccccccccccccccccccccchhhhhhhhhhhHHHHHHhhhc
Confidence 999999999999999999999999999999974 9999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHH
Q 000984 205 LLTLVMLSSIPLLAMSGGVMAIMISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYKSGVQEG 284 (1198)
Q Consensus 205 ~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~ 284 (1198)
.+++++++.+|+..++.....+...+..++..+..++..+.+.|.++|+++||.|++|+.+.+++.+..++..+...+..
T Consensus 157 ~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~ 236 (319)
T d3b60a2 157 QLSIILVVLAPIVSIAIRVVSKRFRSISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNKMRLQGMKMV 236 (319)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhhhhhHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHhhcCCceeeehhccchhhhhhhhhhhhhhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999988888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC
Q 000984 285 LAAGIGLGMVMLIVFCSYALSVWYGGKLILEEGYNGGQVVNVMVAVLTGSMSLGEASPCLSAFGAGQAAAFKMFETINRK 364 (1198)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~ 364 (1198)
...+.......++.....++.+++|+.++..+.++.|.+++++.+......++..+......+.++.++.+|+++.++.+
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~g~it~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~s~~Ri~elld~~ 316 (319)
T d3b60a2 237 SASSISDPIIQLIASLALAFVLYAASFPSVMDSLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDSE 316 (319)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSSSTTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHhcccchhhhhhhhhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 88777777777777777777888888888899999999988877777777888888888999999999999999999877
Q ss_pred CC
Q 000984 365 PE 366 (1198)
Q Consensus 365 ~~ 366 (1198)
||
T Consensus 317 ~E 318 (319)
T d3b60a2 317 QE 318 (319)
T ss_dssp CS
T ss_pred CC
Confidence 65
|
| >d2hyda2 f.37.1.1 (A:1-323) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: ABC transporter transmembrane region superfamily: ABC transporter transmembrane region family: ABC transporter transmembrane region domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=99.92 E-value=2.5e-22 Score=226.59 Aligned_cols=319 Identities=14% Similarity=0.124 Sum_probs=259.7
Q ss_pred HHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCchhhH---HHHHHHHHHHHHHHHHHHHHHHH
Q 000984 46 FYKLFTFADSADTALMIIGSIGAIGNGLCLPLMTLLFGDLINTFGDNQNNSETV---DKVSKVAVKFVYLGIGSGIASFL 122 (1198)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~ 122 (1198)
++++++|.+++++. +++++++.++...+....|++++.++|....+....... .........++++.++..++.++
T Consensus 2 lKrl~~~~k~~k~~-~~~~~~~~~~~~~~~~~~p~l~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 80 (323)
T d2hyda2 2 IKRYLQFVKPYKYR-IFATIIVGIIKFGIPMLIPLLIKYAIDGVINNHALTTDEKVHHLTIAIGIALFIFVIVRPPIEFI 80 (323)
T ss_dssp HHHHHHHHGGGHHH-HHHHHHHHHTTTHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677887765443 334444555555556667778899998765432211111 11111122233444556677778
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhccCCcchHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000984 123 QVTCWMITGERQATRIRGLYLKTILRQDVAFFDNETNTGEVVGRMSGDTVLIQDAMGEKVGKFLQLMATFLGGFLIAFIK 202 (1198)
Q Consensus 123 ~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~f~~~~~~G~i~~r~s~D~~~i~~~~~~~~~~~~~~~~~~i~~~i~~~~~ 202 (1198)
+.++..+.+.+...++|.+++++++++|+++|++. ++|++++|+++|++.+.+.+...+...+..+..+++.++++++.
T Consensus 81 ~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~~~-~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~ 159 (323)
T d2hyda2 81 RQYLAQWTSNKILYDIRKKLYNHLQALSARFYANN-QVGQVISRVINDVEQTKDFILTGLMNIWLDCITIIIALSIMFFL 159 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHTS-CHHHHHHHHHHHHHHTHHHHHCCCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHhhhhhcccccccccc-cccccccccchhhhhhccchhhhhhhcchhhhhhhhhhhhhhhh
Confidence 88888888999999999999999999999999974 99999999999999999998888888888888899999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcHHHHHHHHHHHHHHHHHHHHH
Q 000984 203 GWLLTLVMLSSIPLLAMSGGVMAIMISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYKSGVQ 282 (1198)
Q Consensus 203 ~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~ 282 (1198)
+|.++++.++.+|+..+....+.+..++..++..+..++..+.+.|.++|+++||+|++|+.+.+++.+..++..+...+
T Consensus 160 ~~~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~k 239 (323)
T d2hyda2 160 DVKLTLAALFIFPFYILTVYVFFGRLRKLTRERSQALAEVQGFLHERVQGISVVKSFAIEDNEAKNFDKKNTNFLTRALK 239 (323)
T ss_dssp CTTTHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHhhhcccccchhHHHHHHHHHHHHHHHHHhcCCchhhhHhhhccchhhhhcccccccchhhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 000984 283 EGLAAGIGLGMVMLIVFCSYALSVWYGGKLILEEGYNGGQVVNVMVAVLTGSMSLGEASPCLSAFGAGQAAAFKMFETIN 362 (1198)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~ 362 (1198)
.....+........+..+..++.+++|.+++..+.++.|.+++++.+......++..+......+..+..+.+|+++.++
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~s~g~l~~~~~~~~~l~~~l~~l~~~~~~~~~~~~s~~Ri~elLd 319 (323)
T d2hyda2 240 HTRWNAYSFAAINTVTDIGPIIVIGVGAYLAISGSITVGTLAAFVGYLELLFGPLRRLVASFTTLTQSFASMDRVFQLID 319 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHTHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HhhhhhhccccccccchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 88877777777777777777788888999999999999998887766666667888888889999999999999999998
Q ss_pred cCCC
Q 000984 363 RKPE 366 (1198)
Q Consensus 363 ~~~~ 366 (1198)
++||
T Consensus 320 ~e~e 323 (323)
T d2hyda2 320 EDYD 323 (323)
T ss_dssp CCCS
T ss_pred CCCC
Confidence 7653
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Probab=99.90 E-value=8e-25 Score=229.12 Aligned_cols=131 Identities=23% Similarity=0.430 Sum_probs=112.3
Q ss_pred EEEeeeeEECCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHhhcc
Q 000984 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMG 1122 (1198)
Q Consensus 1043 I~f~nVsf~Y~~~~~~~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~~i~l~~LR~~Is 1122 (1198)
|+++||+++|++ .+|+||||+|++||.+||+||||||||||+++|.|+.+|++|+|++||+|+++++.. |++||
T Consensus 2 i~v~nlsk~y~~----~aL~~vs~~i~~Ge~~~liGpsGaGKSTll~~l~Gl~~p~sG~I~~~G~~i~~~~~~--~r~ig 75 (229)
T d3d31a2 2 IEIESLSRKWKN----FSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPE--KHDIA 75 (229)
T ss_dssp EEEEEEEEECSS----CEEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCHH--HHTCE
T ss_pred EEEEEEEEEeCC----EEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCcCCCCCEEEEccEeccccchh--Hhcce
Confidence 799999999952 489999999999999999999999999999999999999999999999999987765 78999
Q ss_pred eeccccccccc-cHHHHHhcCCC--CCCCHHHHHHHHHHcchHHHHHhccc----cccceeeee
Q 000984 1123 LVSQEPVLFND-TIRANIAYGKG--GDATEAEIQAASEMANAHKFICSLQQ----VRTSRLLLV 1179 (1198)
Q Consensus 1123 iV~Qdp~LF~g-TIreNI~~g~~--~~~tdeei~~Al~~A~l~dfI~~LP~----g~dt~v~~~ 1179 (1198)
+|||++.||.. |++|||.|+.. ....++++.++++..++.++..+.|. |-.-+|++.
T Consensus 76 ~v~Q~~~l~~~~tV~enl~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGG~~QRvaiA 139 (229)
T d3d31a2 76 FVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEHLLDRNPLTLSGGEQQRVALA 139 (229)
T ss_dssp EECTTCCCCTTSCHHHHHHHHHHHHCCCCHHHHHHHHHHTTCTTTTTSCGGGSCHHHHHHHHHH
T ss_pred eeccccccCccccHHHHHHHHHhhccccHHHHHHHHHHHhcchhhHhCChhhCCHHHhcchhhh
Confidence 99999999965 99999987521 13467889999999999888766654 444444443
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.90 E-value=5.7e-25 Score=240.18 Aligned_cols=117 Identities=22% Similarity=0.406 Sum_probs=105.5
Q ss_pred cccEEEeeeeEECCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHh
Q 000984 1040 KGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQ 1119 (1198)
Q Consensus 1040 ~G~I~f~nVsf~Y~~~~~~~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~~i~l~~LR~ 1119 (1198)
.+.|+|+|++|.| .|||+||||+|++||++|||||||||||||+++|+|+++|++|+|.+||
T Consensus 36 ~~~i~~~~~~~~g-----~pvL~~isl~i~~Ge~vaivG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g------------- 97 (281)
T d1r0wa_ 36 ENNVSFSHLCLVG-----NPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSG------------- 97 (281)
T ss_dssp ----CHHHHHHTT-----CEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEECCS-------------
T ss_pred CCcEEEEEcCCCC-----CeEEeCeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCcCCCcEEEECC-------------
Confidence 3568888887744 3699999999999999999999999999999999999999999999999
Q ss_pred hcceeccccccccccHHHHHhcCCCCCCCHHHHHHHHHHcchHHHHHhcccccccee
Q 000984 1120 QMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQVRTSRL 1176 (1198)
Q Consensus 1120 ~IsiV~Qdp~LF~gTIreNI~~g~~~~~tdeei~~Al~~A~l~dfI~~LP~g~dt~v 1176 (1198)
+|++|||+|.||++||+|||.||. ..++.+++++++.+++++++.++|+|++|.+
T Consensus 98 ~i~~v~Q~~~l~~~tv~eni~~~~--~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~ 152 (281)
T d1r0wa_ 98 RVSFCSQFSWIMPGTIKENIIFGV--SYDEYRYKSVVKACQLQQDITKFAEQDNTVL 152 (281)
T ss_dssp CEEEECSSCCCCSEEHHHHHTTTS--CCCHHHHHHHHHHTTCHHHHTTSTTGGGCEE
T ss_pred EEEEEeccccccCceeeccccccc--cccchHHHHHHHHHHhHHHHHhchhhhhhhh
Confidence 489999999999999999999984 5788999999999999999999999999865
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.90 E-value=1.5e-24 Score=227.90 Aligned_cols=135 Identities=21% Similarity=0.378 Sum_probs=90.9
Q ss_pred EEEeeeeEECCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHhhcc
Q 000984 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMG 1122 (1198)
Q Consensus 1043 I~f~nVsf~Y~~~~~~~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~~i~l~~LR~~Is 1122 (1198)
|+++||+++|+ +..||+||||+|++||.+||+||||||||||+++|.|+++|++|+|++||+|+.+.+. .|++||
T Consensus 1 Iev~nv~k~yg---~~~~l~~isl~i~~Gei~~liGpsGsGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~~~~--~~r~ig 75 (232)
T d2awna2 1 VQLQNVTKAWG---EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPP--AERGVG 75 (232)
T ss_dssp EEEEEEEEEET---TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEESSSCCTTSCG--GGTCEE
T ss_pred CEEEEEEEEEC---CEEEEeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCCEEEECCEECCCCch--hhceee
Confidence 79999999996 3469999999999999999999999999999999999999999999999999998775 468899
Q ss_pred eeccccccccc-cHHHHHhcCCCC-----CCCHHHHHHHHHHcchHHHH----Hhccccccceeeeeecc
Q 000984 1123 LVSQEPVLFND-TIRANIAYGKGG-----DATEAEIQAASEMANAHKFI----CSLQQVRTSRLLLVMIP 1182 (1198)
Q Consensus 1123 iV~Qdp~LF~g-TIreNI~~g~~~-----~~tdeei~~Al~~A~l~dfI----~~LP~g~dt~v~~~~~~ 1182 (1198)
+|||+|.||.. |++|||.++... +..++.+.++++..++.++. ..|+.|-.-+|++..+-
T Consensus 76 ~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~LSGGqkQRvaiAraL 145 (232)
T d2awna2 76 MVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTL 145 (232)
T ss_dssp EECSSCCC---------------------CHHHHHHHHHHHHC---------------------CHHHHH
T ss_pred eeccccccccchhHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCChhhhhCChhhCCHHHHHHHHHHHHH
Confidence 99999999955 999999986321 11235588899999887755 45667877888776553
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=99.90 E-value=1e-24 Score=229.95 Aligned_cols=137 Identities=20% Similarity=0.362 Sum_probs=114.2
Q ss_pred cEEEeeeeEECCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCC---hHHHH
Q 000984 1042 EIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQ---LKWLR 1118 (1198)
Q Consensus 1042 ~I~f~nVsf~Y~~~~~~~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~~i~---l~~LR 1118 (1198)
.|+++||+++|+.+ +..||+||||+|++||.+||+||||||||||+++|.|+++|++|+|++||+|+...+ ...+|
T Consensus 3 ~i~v~nlsk~y~~g-~~~aL~~vsl~i~~Ge~~~iiG~sGsGKSTll~~i~gl~~p~~G~I~~~g~~i~~~~~~~~~~~r 81 (242)
T d1oxxk2 3 RIIVKNVSKVFKKG-KVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPED 81 (242)
T ss_dssp CEEEEEEEEEEGGG-TEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGGG
T ss_pred EEEEEeEEEEECCC-CEEEEeceEEEECCCCEEEEECCCCCcHHHHHHHHHcCcCCCCceEEECCEEeecCchhhcchhh
Confidence 48999999999643 356999999999999999999999999999999999999999999999999998766 45568
Q ss_pred hhcceeccccccccc-cHHHHHhcCCC-CCCCH----HHHHHHHHHcchHHHHHhccc----cccceeeee
Q 000984 1119 QQMGLVSQEPVLFND-TIRANIAYGKG-GDATE----AEIQAASEMANAHKFICSLQQ----VRTSRLLLV 1179 (1198)
Q Consensus 1119 ~~IsiV~Qdp~LF~g-TIreNI~~g~~-~~~td----eei~~Al~~A~l~dfI~~LP~----g~dt~v~~~ 1179 (1198)
++||+|||+|.||.. |++|||.++.. ...+. +.+.++++..++.++..+.|. |..-+|++.
T Consensus 82 r~ig~vfQ~~~L~p~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~p~~LSGGqkQRvaiA 152 (242)
T d1oxxk2 82 RKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGAQQQRVALA 152 (242)
T ss_dssp SCEEEEETTSCCCTTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHH
T ss_pred ccceEEeccccccccccHHHHhhhhhHhhcCCHHHHHHHHHHHHhhcChHhhhhCChhhCCHHHHhHHHHH
Confidence 899999999999975 99999998632 12343 447889999999887766554 555555544
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Probab=99.89 E-value=2.2e-24 Score=227.77 Aligned_cols=138 Identities=22% Similarity=0.362 Sum_probs=113.4
Q ss_pred EEEeeeeEECCCCCC-ccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHH---HH
Q 000984 1043 IELHHVSFKYPSRPD-VQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKW---LR 1118 (1198)
Q Consensus 1043 I~f~nVsf~Y~~~~~-~~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~~i~l~~---LR 1118 (1198)
|+++||+++|+.+.. ..||+||||+|++||.+||+||||||||||+++|.|+.+|++|+|.+||+|+.+++.+. +|
T Consensus 2 i~v~nlsk~y~~~~~~~~al~~vsl~i~~Ge~~~iiG~sGsGKSTLl~~i~Gl~~p~sG~I~~~g~~i~~~~~~~~~~~r 81 (240)
T d3dhwc1 2 IKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKAR 81 (240)
T ss_dssp EEEEEEEEEEECSSCEEEEEEEEEEEECSSCEEEEEESTTSSHHHHHHHHTTSSCCSEEEEEETTEEECTTCHHHHHHHH
T ss_pred EEEEeEEEEeCCCCeeEEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHcCCccccCCceEEcCeEeeeCChhhhhhhh
Confidence 799999999975422 25899999999999999999999999999999999999999999999999999988665 66
Q ss_pred hhcceeccccccccc-cHHHHHhcC-----CCCCCCHHHHHHHHHHcchHHHHHhccc----cccceeeeee
Q 000984 1119 QQMGLVSQEPVLFND-TIRANIAYG-----KGGDATEAEIQAASEMANAHKFICSLQQ----VRTSRLLLVM 1180 (1198)
Q Consensus 1119 ~~IsiV~Qdp~LF~g-TIreNI~~g-----~~~~~tdeei~~Al~~A~l~dfI~~LP~----g~dt~v~~~~ 1180 (1198)
++||+|||||.||.. |++|||.++ .+.+.-++.+.++++.+++.++..+.|. |..-+|++..
T Consensus 82 r~ig~VfQ~~~l~~~~tv~eni~~~l~~~~~~~~~~~~~v~~~L~~vgL~~~~~~~~~~LSGG~~QRvaiAr 153 (240)
T d3dhwc1 82 RQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIAR 153 (240)
T ss_dssp HHEEECCSSCCCCTTSBHHHHHHHHHHTTTCCTTHHHHHHHHHHHHHSTTTTTSSCBSCCCHHHHHHHHHHH
T ss_pred ccccccccccccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHhh
Confidence 889999999999965 999999864 1111124568899999999887766554 4445555443
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=99.89 E-value=4.2e-24 Score=225.10 Aligned_cols=136 Identities=21% Similarity=0.387 Sum_probs=109.1
Q ss_pred cEEEeeeeEECCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHhhc
Q 000984 1042 EIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQM 1121 (1198)
Q Consensus 1042 ~I~f~nVsf~Y~~~~~~~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~~i~l~~LR~~I 1121 (1198)
.|+++||+++|+ +..||+||||+|++||.+||+||||||||||+++|.|+++|++|+|.+||+|+++++.. |++|
T Consensus 6 ~I~v~nlsk~yg---~~~al~~vsl~v~~Ge~~~liGpsGaGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~~~~~--~r~i 80 (239)
T d1v43a3 6 EVKLENLTKRFG---NFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPK--DRNI 80 (239)
T ss_dssp CEEEEEEEEEET---TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGG--GGTE
T ss_pred eEEEEEEEEEEC---CEEEEcceeEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEEcceecccCCcc--cceE
Confidence 499999999996 34699999999999999999999999999999999999999999999999999988864 6789
Q ss_pred ceecccccccc-ccHHHHHhcCCC-CCCCHH----HHHHHHHHcchHHHHH----hccccccceeeeeecc
Q 000984 1122 GLVSQEPVLFN-DTIRANIAYGKG-GDATEA----EIQAASEMANAHKFIC----SLQQVRTSRLLLVMIP 1182 (1198)
Q Consensus 1122 siV~Qdp~LF~-gTIreNI~~g~~-~~~tde----ei~~Al~~A~l~dfI~----~LP~g~dt~v~~~~~~ 1182 (1198)
|+|||+|.||. -|++||+.|+.. ...+.+ .+.++++..++.++.. .|+.|-.-+|+++++-
T Consensus 81 g~v~Q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGq~QRvaiAraL 151 (239)
T d1v43a3 81 SMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRVAVARAI 151 (239)
T ss_dssp EEEEC------CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCGGGTTSCTTTCCSSCHHHHHHHHHH
T ss_pred EEEeechhhcccchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHhhh
Confidence 99999999995 699999998642 134544 4567889999888754 4556666777666543
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.89 E-value=3.8e-24 Score=224.72 Aligned_cols=140 Identities=25% Similarity=0.397 Sum_probs=112.6
Q ss_pred EEEeeeeEECCCCCC-ccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHH----
Q 000984 1043 IELHHVSFKYPSRPD-VQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWL---- 1117 (1198)
Q Consensus 1043 I~f~nVsf~Y~~~~~-~~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~~i~l~~L---- 1117 (1198)
|+++||+++|+.+.. ..||+||||+|++||.+||+||||||||||+++|.|+++|++|+|++||.|+.+++.+.+
T Consensus 2 I~i~nlsk~y~~~~~~~~al~~isl~i~~Ge~~~iiG~sGsGKSTLl~~i~gl~~p~sG~I~~~g~~i~~~~~~~~~~~r 81 (230)
T d1l2ta_ 2 IKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIR 81 (230)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHH
T ss_pred EEEEeEEEEeCCCCeeEEEEeceEEEEcCCCEEEEECCCCCCcchhhHhccCCCCCCcceeEECCEEcCcCChhhcchhh
Confidence 799999999974322 247999999999999999999999999999999999999999999999999999998776
Q ss_pred Hhhcceeccccccccc-cHHHHHhcCC----CCCCCHH----HHHHHHHHcchHH-H----HHhccccccceeeeeecc
Q 000984 1118 RQQMGLVSQEPVLFND-TIRANIAYGK----GGDATEA----EIQAASEMANAHK-F----ICSLQQVRTSRLLLVMIP 1182 (1198)
Q Consensus 1118 R~~IsiV~Qdp~LF~g-TIreNI~~g~----~~~~tde----ei~~Al~~A~l~d-f----I~~LP~g~dt~v~~~~~~ 1182 (1198)
|++||+|||+|.||.. |++||+.++. .+..+.+ ++.+.++..++.+ + ..+|..|-.-+|+++.+-
T Consensus 82 ~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~p~~LSGGqkQRvaIAraL 160 (230)
T d1l2ta_ 82 RDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARAL 160 (230)
T ss_dssp HHHEEEECTTCCCCTTSCHHHHHHHHHHTCCSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGSCHHHHHHHHHHHHH
T ss_pred cceEEEEecchhhCcCccHHHHHhHHHHHhccCCCCHHHHHHHHHHHHHhhchhhhhhcCChhhCCHHHHHHHHHHhhh
Confidence 4679999999999854 9999998641 1233433 4566778888754 3 445666766777666543
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Probab=99.88 E-value=6.9e-24 Score=223.94 Aligned_cols=135 Identities=19% Similarity=0.343 Sum_probs=111.4
Q ss_pred cEEEeeeeEECCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHH----H
Q 000984 1042 EIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKW----L 1117 (1198)
Q Consensus 1042 ~I~f~nVsf~Y~~~~~~~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~~i~l~~----L 1117 (1198)
.|+++||+++|+ +.+||+||||+|++||.+||+||||||||||+++|.|+++|++|+|.+||.|+.+.+... .
T Consensus 3 ~i~v~nl~k~yg---~~~al~~vsl~i~~Ge~~~liG~sGaGKSTll~~i~gl~~p~sG~I~~~g~~i~~~~~~~~~~~~ 79 (240)
T d1g2912 3 GVRLVDVWKVFG---EVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPK 79 (240)
T ss_dssp EEEEEEEEEEET---TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCGG
T ss_pred cEEEEeEEEEEC---CEEEEcceeeEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCCEEEECCEEecccchhhhcccc
Confidence 489999999996 346999999999999999999999999999999999999999999999999998876554 3
Q ss_pred Hhhcceeccccccccc-cHHHHHhcCCC-CCCCH----HHHHHHHHHcchHHHHHhcc----ccccceeeee
Q 000984 1118 RQQMGLVSQEPVLFND-TIRANIAYGKG-GDATE----AEIQAASEMANAHKFICSLQ----QVRTSRLLLV 1179 (1198)
Q Consensus 1118 R~~IsiV~Qdp~LF~g-TIreNI~~g~~-~~~td----eei~~Al~~A~l~dfI~~LP----~g~dt~v~~~ 1179 (1198)
|++|++|||+|.||.. |++||+.++.. ...+. +.+.++++..++.++..+.| .|..-+|+++
T Consensus 80 ~r~ig~v~Q~~~L~~~ltV~eni~~~~~~~~~~~~e~~~~v~~~l~~~~l~~~~~~~p~~LSGGqkQRv~IA 151 (240)
T d1g2912 80 DRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKPRELSGGQRQRVALG 151 (240)
T ss_dssp GSSEEEECSCCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTTCCGGGSCHHHHHHHHHH
T ss_pred cccceecccchhhcchhhhhHhhhhhHHHcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHH
Confidence 7889999999999965 99999997521 12333 34788899999888765544 4555555443
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Probab=99.85 E-value=3.1e-22 Score=215.01 Aligned_cols=137 Identities=20% Similarity=0.316 Sum_probs=111.1
Q ss_pred cEEEeeeeEECCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCCh-------
Q 000984 1042 EIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQL------- 1114 (1198)
Q Consensus 1042 ~I~f~nVsf~Y~~~~~~~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~~i~l------- 1114 (1198)
.|+++||+++|. +.+||+||||+|++||.+||+||||||||||+++|.|+++|++|+|++||.|+...+.
T Consensus 2 ~Lev~nl~k~yg---~~~al~~vs~~i~~GEi~~iiG~sGsGKSTLl~~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~ 78 (258)
T d1b0ua_ 2 KLHVIDLHKRYG---GHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKV 78 (258)
T ss_dssp CEEEEEEEEEET---TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEE
T ss_pred eEEEEEEEEEEC---CEEEEcceeeEEcCCCEEEEECCCCCcHHHHHHHHHcCccCCCCCEEECCEEeccCCccchhccc
Confidence 489999999996 3469999999999999999999999999999999999999999999999999976543
Q ss_pred ------HHHHhhcceecccccccc-ccHHHHHhcCC--CCCCCH----HHHHHHHHHcchHHHH-----Hhcccccccee
Q 000984 1115 ------KWLRQQMGLVSQEPVLFN-DTIRANIAYGK--GGDATE----AEIQAASEMANAHKFI-----CSLQQVRTSRL 1176 (1198)
Q Consensus 1115 ------~~LR~~IsiV~Qdp~LF~-gTIreNI~~g~--~~~~td----eei~~Al~~A~l~dfI-----~~LP~g~dt~v 1176 (1198)
..+|++|++|||+|.||. -|++||+.+++ ....+. +.+.++++.+++.+.. .+|..|-.-+|
T Consensus 79 ~~~~~~~~~r~~ig~vfQ~~~l~~~~tv~env~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~p~~LSGG~~QRv 158 (258)
T d1b0ua_ 79 ADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYPVHLSGGQQQRV 158 (258)
T ss_dssp SCHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSCGGGSCHHHHHHH
T ss_pred ccHhHHHHHhcceEEEEechhhccchhcchhhhhhHHHhcCCCHHHHHHHHHHHHHHcCCchhhhccCcccccHHHHHHH
Confidence 458899999999999996 49999998652 112333 4577788888886643 33555666666
Q ss_pred eeeec
Q 000984 1177 LLVMI 1181 (1198)
Q Consensus 1177 ~~~~~ 1181 (1198)
++..+
T Consensus 159 ~iAra 163 (258)
T d1b0ua_ 159 SIARA 163 (258)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55543
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Probab=99.84 E-value=6.3e-22 Score=210.77 Aligned_cols=137 Identities=18% Similarity=0.355 Sum_probs=107.5
Q ss_pred cEEEeeeeEECCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHh-h
Q 000984 1042 EIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQ-Q 1120 (1198)
Q Consensus 1042 ~I~f~nVsf~Y~~~~~~~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~~i~l~~LR~-~ 1120 (1198)
-|+++||+++|+ +..||+||||+|++||.+||+||+|||||||+++|+|+++|++|+|++||.|+.+.+.+..++ .
T Consensus 6 ~Lev~~l~k~yg---~~~al~~vs~~i~~Gei~~liGpnGaGKSTl~~~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~r~g 82 (240)
T d1ji0a_ 6 VLEVQSLHVYYG---AIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMG 82 (240)
T ss_dssp EEEEEEEEEEET---TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHTT
T ss_pred EEEEeeEEEEEC---CEEEEeeeeEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEecccccccccHHHHHHhc
Confidence 389999999996 346999999999999999999999999999999999999999999999999999999887654 4
Q ss_pred cceeccccccccc-cHHHHHhcCCCCCCC----HHHHHHHHHHc-chHHHH----Hhccccccceeeeeec
Q 000984 1121 MGLVSQEPVLFND-TIRANIAYGKGGDAT----EAEIQAASEMA-NAHKFI----CSLQQVRTSRLLLVMI 1181 (1198)
Q Consensus 1121 IsiV~Qdp~LF~g-TIreNI~~g~~~~~t----deei~~Al~~A-~l~dfI----~~LP~g~dt~v~~~~~ 1181 (1198)
|+++||++.||.. |++||+.++...... ++++.++++.. ++.++. .+|..|..-+|++.++
T Consensus 83 i~~~~q~~~l~~~ltv~en~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~LSGG~~Qrv~iAra 153 (240)
T d1ji0a_ 83 IALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWIFSLFPRLKERLKQLGGTLSGGEQQMLAIGRA 153 (240)
T ss_dssp EEEECSSCCCCTTSBHHHHHHGGGTTCCCSSHHHHHHHHHHHHCHHHHTTTTSBSSSSCHHHHHHHHHHHH
T ss_pred ccccCcccccCCcccHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhChHHHHhCchhhCCHHHHHHHHHHHH
Confidence 8999999999976 999999876322222 22334444433 343333 3466666666665544
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Probab=99.84 E-value=6.1e-22 Score=210.31 Aligned_cols=137 Identities=15% Similarity=0.346 Sum_probs=111.5
Q ss_pred ccEEEeeeeEECCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHhh
Q 000984 1041 GEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQ 1120 (1198)
Q Consensus 1041 G~I~f~nVsf~Y~~~~~~~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~~i~l~~LR~~ 1120 (1198)
|.|+++|++.+|.+ .+||+||||+|++||.+||+||+|||||||+++|.|++.|++|+|.++|.|+.+. .+.+|++
T Consensus 1 gaI~v~nl~k~yg~---~~vl~~vs~~v~~Gei~glvG~nGaGKSTLl~~l~G~~~p~~G~i~i~G~~i~~~-~~~~~~~ 76 (238)
T d1vpla_ 1 GAVVVKDLRKRIGK---KEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEE-PHEVRKL 76 (238)
T ss_dssp CCEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTC-HHHHHTT
T ss_pred CCEEEEeEEEEECC---EEEEccceeEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECcEecccC-hHHHHhh
Confidence 67999999999963 4699999999999999999999999999999999999999999999999999884 5788999
Q ss_pred cceeccccccccc-cHHHHHhcCCC-CCCCHH----HHHHHHHHcchHHH----HHhccccccceeeeeec
Q 000984 1121 MGLVSQEPVLFND-TIRANIAYGKG-GDATEA----EIQAASEMANAHKF----ICSLQQVRTSRLLLVMI 1181 (1198)
Q Consensus 1121 IsiV~Qdp~LF~g-TIreNI~~g~~-~~~tde----ei~~Al~~A~l~df----I~~LP~g~dt~v~~~~~ 1181 (1198)
+++|||++.+|.. |++||+.|... ...+++ .+.++++..++.++ +.+|..|..-+++++++
T Consensus 77 i~~vpq~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lSgG~~qrv~iA~a 147 (238)
T d1vpla_ 77 ISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKDRVSTYSKGMVRKLLIARA 147 (238)
T ss_dssp EEEECTTCCCCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCGGGGGSBGGGCCHHHHHHHHHHHH
T ss_pred EeEeeeccccCCCccHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCHHHHhhhhhhCCHHHHHHHHHHHH
Confidence 9999999988865 99999975310 012344 35556666676555 56666676666665544
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.84 E-value=9.7e-22 Score=211.62 Aligned_cols=135 Identities=16% Similarity=0.234 Sum_probs=110.3
Q ss_pred EEEeeeeEECCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHhh-c
Q 000984 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQ-M 1121 (1198)
Q Consensus 1043 I~f~nVsf~Y~~~~~~~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~~i~l~~LR~~-I 1121 (1198)
|+++||+.+|+ +.+||+||||+|++||.+||+||+|||||||+++|.|+++|++|+|++||.|+...+.+++++. |
T Consensus 5 L~v~nlsk~yg---~~~aL~~vs~~v~~Gei~~liG~nGaGKSTLl~~i~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~gi 81 (254)
T d1g6ha_ 5 LRTENIVKYFG---EFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYGI 81 (254)
T ss_dssp EEEEEEEEEET---TEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHTE
T ss_pred EEEEEEEEEEC---CeEEEcceEEEECCCCEEEEECCCCCcHHHHHHHHHCCCcCCCcEEEECCEeccchhHHHHHHhcC
Confidence 89999999996 3469999999999999999999999999999999999999999999999999999999987765 9
Q ss_pred ceecccccccc-ccHHHHHhcCCCC--------------CCCH----HHHHHHHHHcchHH----HHHhccccccceeee
Q 000984 1122 GLVSQEPVLFN-DTIRANIAYGKGG--------------DATE----AEIQAASEMANAHK----FICSLQQVRTSRLLL 1178 (1198)
Q Consensus 1122 siV~Qdp~LF~-gTIreNI~~g~~~--------------~~td----eei~~Al~~A~l~d----fI~~LP~g~dt~v~~ 1178 (1198)
++|||+|.+|. -|++|||.+|... ...+ +++.++++..++.+ .+..|+.|-.-+|++
T Consensus 82 ~~v~Q~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~Qrv~i 161 (254)
T d1g6ha_ 82 VRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGELSGGQMKLVEI 161 (254)
T ss_dssp EECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHH
T ss_pred CccCCccccCCCCeeeeeeeehhhhccccchhhhhhhcccccHHHHHHHHHHHHHhcCcchhccCchhhCCcHHHHHHHH
Confidence 99999998884 5999999876210 1122 23445566666544 456777777777766
Q ss_pred ee
Q 000984 1179 VM 1180 (1198)
Q Consensus 1179 ~~ 1180 (1198)
..
T Consensus 162 Ar 163 (254)
T d1g6ha_ 162 GR 163 (254)
T ss_dssp HH
T ss_pred HH
Confidence 54
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Probab=99.82 E-value=4.6e-21 Score=198.98 Aligned_cols=131 Identities=23% Similarity=0.388 Sum_probs=109.1
Q ss_pred cEEEeeeeEECCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHhhc
Q 000984 1042 EIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQM 1121 (1198)
Q Consensus 1042 ~I~f~nVsf~Y~~~~~~~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~~i~l~~LR~~I 1121 (1198)
.|+++||+|+|+ .+||+||||+|++||.+||+||+|||||||+++|+|+++|++|+|.+||+|+.+ +|.++
T Consensus 2 ~lev~~ls~~y~----~~vl~~is~~i~~Gei~~l~G~NGsGKSTLl~~i~gl~~p~~G~I~~~g~~i~~-----~~~~i 72 (200)
T d1sgwa_ 2 KLEIRDLSVGYD----KPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITK-----VKGKI 72 (200)
T ss_dssp EEEEEEEEEESS----SEEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGG-----GGGGE
T ss_pred eEEEEEEEEEeC----CeEEeceEEEEcCCCEEEEECCCCChHHHHHHHHhcccccCCCEEEECCEehhH-----hcCcE
Confidence 489999999994 259999999999999999999999999999999999999999999999999864 68899
Q ss_pred ceeccccccccc-cHHHHHhcCC---CCCCCHHHHHHHHHHcch---HHHHHhccccccceeeeeec
Q 000984 1122 GLVSQEPVLFND-TIRANIAYGK---GGDATEAEIQAASEMANA---HKFICSLQQVRTSRLLLVMI 1181 (1198)
Q Consensus 1122 siV~Qdp~LF~g-TIreNI~~g~---~~~~tdeei~~Al~~A~l---~dfI~~LP~g~dt~v~~~~~ 1181 (1198)
+++||++.++.. |+++|+.+.. ....++++++++++..++ ++.+.+|..|-.-++.++.+
T Consensus 73 ~~~~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LSgG~~qrv~ia~a 139 (200)
T d1sgwa_ 73 FFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALESVEVLDLKKKLGELSQGTIRRVQLAST 139 (200)
T ss_dssp EEECSSCCCCTTSBHHHHHHHHHHHTTCCCCHHHHHHHHHHTTCCCTTSBGGGSCHHHHHHHHHHHH
T ss_pred EEEeecccCCCCcCHHHHHHHHHHhcCCccCHHHHHHHHHHcCCcccccccCcCCCcHHHHHHHHHH
Confidence 999999998855 8999987320 125678999999988765 34566677776666655543
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.79 E-value=6.4e-20 Score=192.41 Aligned_cols=128 Identities=22% Similarity=0.428 Sum_probs=102.1
Q ss_pred EEEeeeeEECCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHhhcc
Q 000984 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMG 1122 (1198)
Q Consensus 1043 I~f~nVsf~Y~~~~~~~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~~i~l~~LR~~Is 1122 (1198)
++. ++.-+|.+ ..+ ||||+++ ||.+||+||||||||||+++|.|+++|++|+|.+||+|+.+++.. |++||
T Consensus 3 l~v-~~~k~~g~----~~~-~vs~~~~-~e~~~liGpnGaGKSTll~~i~Gl~~p~~G~I~~~G~~i~~~~~~--~r~ig 73 (240)
T d2onka1 3 LKV-RAEKRLGN----FRL-NVDFEMG-RDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPE--RRGIG 73 (240)
T ss_dssp EEE-EEEEEETT----EEE-EEEEEEC-SSEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCTT--TSCCB
T ss_pred EEE-EEEEEECC----EEE-EEEEEeC-CEEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCcCCHH--HcCce
Confidence 344 45566642 124 8999995 789999999999999999999999999999999999999998865 78999
Q ss_pred eeccccccccc-cHHHHHhcCCCCCCCH----HHHHHHHHHcchHHHHHhccc----cccceeeeee
Q 000984 1123 LVSQEPVLFND-TIRANIAYGKGGDATE----AEIQAASEMANAHKFICSLQQ----VRTSRLLLVM 1180 (1198)
Q Consensus 1123 iV~Qdp~LF~g-TIreNI~~g~~~~~td----eei~~Al~~A~l~dfI~~LP~----g~dt~v~~~~ 1180 (1198)
+|||++.||.. ||+|||.|+.. ..+. +.+.++++..++.++..+.|. |..-+|+++.
T Consensus 74 ~v~Q~~~l~~~ltV~enl~~~l~-~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~LSGG~kQRvaiAr 139 (240)
T d2onka1 74 FVPQDYALFPHLSVYRNIAYGLR-NVERVERDRRVREMAEKLGIAHLLDRKPARLSGGERQRVALAR 139 (240)
T ss_dssp CCCSSCCCCTTSCHHHHHHTTCT-TSCHHHHHHHHHHHHHTTTCTTTTTCCGGGSCHHHHHHHHHHH
T ss_pred eeccchhhcccchhhHhhhhhhc-ccCHHHHHHHHHHHHHhcCcHhhhhCChhhCCHHHHHHHHHHH
Confidence 99999999964 99999999843 3443 457888999998887766554 5555555443
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Probab=99.74 E-value=1.6e-18 Score=183.67 Aligned_cols=129 Identities=19% Similarity=0.263 Sum_probs=109.9
Q ss_pred EEEeeeeEECCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHhhcc
Q 000984 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMG 1122 (1198)
Q Consensus 1043 I~f~nVsf~Y~~~~~~~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~~i~l~~LR~~Is 1122 (1198)
++++||+.+| +|+||||+|++||.+||+||+|||||||+++|.|++ |++|+|.++|.|+...+.+.++.+.+
T Consensus 4 l~~~dv~~~~-------~l~~isl~I~~Gei~~iiG~nGaGKSTLl~~l~Gl~-~~~G~I~~~g~~i~~~~~~~~~~~~~ 75 (231)
T d1l7vc_ 4 MQLQDVAEST-------RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGKGSIQFAGQPLEAWSATKLALHRA 75 (231)
T ss_dssp EEEEEECCTT-------TSCSEEEEEETTCEEECBCCTTSSHHHHHHHHHTSC-CCSSEEEESSSBGGGSCHHHHHHHEE
T ss_pred EEEECcccCc-------eecCEEEEEcCCCEEEEECCCCCcHHHHHHHHhCCC-CCceEEEECCEECCcCCHHHHHhhce
Confidence 7999998765 699999999999999999999999999999999986 68999999999999999999999999
Q ss_pred eeccccc-cccccHHHHHhcCCCCCCCHHHHHHHHHHcchHHHHHh----ccccccceeeee
Q 000984 1123 LVSQEPV-LFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICS----LQQVRTSRLLLV 1179 (1198)
Q Consensus 1123 iV~Qdp~-LF~gTIreNI~~g~~~~~tdeei~~Al~~A~l~dfI~~----LP~g~dt~v~~~ 1179 (1198)
+++|+.. .|..++.+|+.++..+....+.+.++++..++.+++.. |..|-.-+|+++
T Consensus 76 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~LSgG~~Qrv~iA 137 (231)
T d1l7vc_ 76 YLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLA 137 (231)
T ss_dssp EECSCCCCCSSCBHHHHHHHHCSCTTCHHHHHHHHHHTTCTTTTTSBGGGCCHHHHHHHHHH
T ss_pred eeeccccCCccccHHHHhhhccchhhHHHHHHHHHHhcCCHhHhCcChhhcCHHHHHHHHHH
Confidence 9999986 57889999999875544456668889999888877654 555555555444
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Probab=99.62 E-value=1.4e-17 Score=170.64 Aligned_cols=159 Identities=14% Similarity=0.083 Sum_probs=106.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcceEEEcCCCCCCcccHHHHHhcCCCCCCHHHHH
Q 000984 414 TAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIR 493 (1198)
Q Consensus 414 ~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~Ni~~~~~~~~~~~~~ 493 (1198)
+++|+||+|||||||++.|+|++++..|.+.+++.+....+...........++.+.++..+...+..++..
T Consensus 2 ki~I~G~~G~GKSTLl~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------- 73 (178)
T d1ye8a1 2 KIIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKRTGFRIITTEGKKKIFSSKFFTSKKLVGSY-------- 73 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGGGEEEEEEEEEC------CCEEEEEETTCCEEEEEETTCCCSSEETTE--------
T ss_pred EEEEECCCCcHHHHHHHHHHhcCCCCcceEEECCcchHHHHHhhhhhhhhhhHHHHHHhhhhhhhhhhhhhh--------
Confidence 589999999999999999999999999999998876544332211111222233333333333222222111
Q ss_pred HHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhC--C
Q 000984 494 VATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMV--N 571 (1198)
Q Consensus 494 ~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~ 571 (1198)
|.+.. ...+|+|+++|.++++++.++|+++++|||....+ ....+.+.+.+..+ +
T Consensus 74 -----------------~~~~~----~~~~~~~~~~~~~l~~~~~~~~~vlllDE~~~~~~--~~~~~~~~l~~~l~~~~ 130 (178)
T d1ye8a1 74 -----------------GVNVQ----YFEELAIPILERAYREAKKDRRKVIIIDEIGKMEL--FSKKFRDLVRQIMHDPN 130 (178)
T ss_dssp -----------------EECHH----HHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGG--GCHHHHHHHHHHHTCTT
T ss_pred -----------------hcCcc----hhhhhhhhhHHHHHHHHHhcCCCceeecCCCccch--hhHHHHHHHHHHhccCC
Confidence 11111 12378999999999999999999999999855433 22344455555443 5
Q ss_pred CeEEEEecCcchhhccCEEEEEeCCEEEEecC
Q 000984 572 RTTVIVAHRLSTVRNADMIAVIHRGKIVEKGT 603 (1198)
Q Consensus 572 ~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~ 603 (1198)
+|+|+++|+.+....+|++..+++|++++-+.
T Consensus 131 ~~il~~~h~~~~~~~~~~i~~~~~~~i~~v~~ 162 (178)
T d1ye8a1 131 VNVVATIPIRDVHPLVKEIRRLPGAVLIELTP 162 (178)
T ss_dssp SEEEEECCSSCCSHHHHHHHTCTTCEEEECCT
T ss_pred CEEEEEEccHHHHHhhceEEEEeCCEEEEECC
Confidence 79999999988878899999999999987653
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.13 E-value=1.2e-10 Score=135.41 Aligned_cols=73 Identities=21% Similarity=0.308 Sum_probs=61.5
Q ss_pred CCCChHHHHHHhHHHh----hccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhC-CCeEEEEecCcchhhccCEEEEE
Q 000984 521 TQLSGGQKQRIAIARA----ILKDPRILLLDEATSALDAESEKVVQEALDRIMV-NRTTVIVAHRLSTVRNADMIAVI 593 (1198)
Q Consensus 521 ~~lSgGqkqri~lARa----l~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~-~~t~i~itH~~~~~~~~d~i~~l 593 (1198)
..||||||.+++||-. .+.++++++||||+++||+.....+.+.|++... +.-+|+|||+++.+..||+++.+
T Consensus 331 ~~lSgGEk~~~~lal~lal~~~~~~pililDE~d~~Ld~~~~~~~~~~l~~~~~~~~Q~I~iTH~~~~~~~ad~~~~V 408 (427)
T d1w1wa_ 331 EYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKNTMFEKSDALVGV 408 (427)
T ss_dssp GGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCHHHHTTCSEEEEE
T ss_pred hhhccchHHHHHHHHHHHHhcCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHhcccEEEE
Confidence 4579999999877642 2467889999999999999999999999987753 44599999999999999998765
|
| >d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Thermotoga maritima [TaxId: 2336]
Probab=99.01 E-value=9.5e-10 Score=121.82 Aligned_cols=76 Identities=24% Similarity=0.358 Sum_probs=65.8
Q ss_pred CCCChHHHHHHhHHHh----hccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhCCCeEEEEecCcchhhccCEEEE--Ee
Q 000984 521 TQLSGGQKQRIAIARA----ILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAV--IH 594 (1198)
Q Consensus 521 ~~lSgGqkqri~lARa----l~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~~d~i~~--l~ 594 (1198)
..+|+|||+...++.. ...+++++++|||-++|++...+.+.+.+++..++.-+|++||++..+..+|+++. ++
T Consensus 218 ~~~~~g~~~l~~~~~~~~~~~~~~~~~~~iDEpe~~Lhp~~~~~l~~~l~~~~~~~QviitTHsp~~~~~~d~~~~v~~~ 297 (308)
T d1e69a_ 218 SLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENSKHTQFIVITHNKIVMEAADLLHGVTMV 297 (308)
T ss_dssp GGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHTTTSEEEEECCCTTGGGGCSEEEEEEES
T ss_pred hhhhHHHhhHHHHHhhhhhhhhccCchhhhhhccccCCHHHHHHHHHHHHHhccCCEEEEEECCHHHHHhcccEEEEEEe
Confidence 3589999999877664 34567899999999999999999999999998888899999999999999999866 55
Q ss_pred CC
Q 000984 595 RG 596 (1198)
Q Consensus 595 ~G 596 (1198)
+|
T Consensus 298 ~g 299 (308)
T d1e69a_ 298 NG 299 (308)
T ss_dssp SS
T ss_pred CC
Confidence 66
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Probab=98.45 E-value=1e-08 Score=103.29 Aligned_cols=70 Identities=14% Similarity=0.136 Sum_probs=54.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHhhcceeccccccccccHHHHHhcC
Q 000984 1073 TVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYG 1142 (1198)
Q Consensus 1073 kvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~~i~l~~LR~~IsiV~Qdp~LF~gTIreNI~~g 1142 (1198)
||+|+||+|||||||++.|+++++|+.|.+.++|++....+.........+.++.+.++..+..++.+.+
T Consensus 2 ki~I~G~~G~GKSTLl~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (178)
T d1ye8a1 2 KIIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKRTGFRIITTEGKKKIFSSKFFTSKKLVG 71 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGGGEEEEEEEEEC------CCEEEEEETTCCEEEEEETTCCCSSEET
T ss_pred EEEEECCCCcHHHHHHHHHHhcCCCCcceEEECCcchHHHHHhhhhhhhhhhHHHHHHhhhhhhhhhhhh
Confidence 7999999999999999999999999999999999988777666555566677788888877777666554
|
| >d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric traffic ATPase, HP0525 species: Helicobacter pylori [TaxId: 210]
Probab=97.09 E-value=0.00013 Score=79.25 Aligned_cols=91 Identities=19% Similarity=0.292 Sum_probs=55.1
Q ss_pred EEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHhhcceeccccccccccHHHHHhcCCC-
Q 000984 1066 LKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKG- 1144 (1198)
Q Consensus 1066 ~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~~i~l~~LR~~IsiV~Qdp~LF~gTIreNI~~g~~- 1144 (1198)
.-++.|..+.|+|+|||||||++++|+++.+|+.=-|.| .|-.++.+..-++.+.+-.+..+=+..=++.-++..+.
T Consensus 161 ~~v~~~~nili~G~tgSGKTT~l~al~~~i~~~~rivti--Ed~~El~l~~~~~~~~~~~~~~~~~~~ll~~~lR~~pd~ 238 (323)
T d1g6oa_ 161 DGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISI--EDTEEIVFKHHKNYTQLFFGGNITSADCLKSCLRMRPDR 238 (323)
T ss_dssp HHHHHTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEE--ESSCCCCCSSCSSEEEEECBTTBCHHHHHHHHTTSCCSE
T ss_pred HHHHhCCCEEEEeeccccchHHHHHHhhhcccccceeec--cchhhhhcccccccceeccccchhHHHHHHHHhccCCCc
Confidence 345667789999999999999999999999987666777 45566655433333333333222122223444444321
Q ss_pred ---CCCCHHHHHHHHHH
Q 000984 1145 ---GDATEAEIQAASEM 1158 (1198)
Q Consensus 1145 ---~~~tdeei~~Al~~ 1158 (1198)
++.-+.|.+++++.
T Consensus 239 iivgEiR~~ea~~~l~a 255 (323)
T d1g6oa_ 239 IILGELRSSEAYDFYNV 255 (323)
T ss_dssp EEESCCCSTHHHHHHHH
T ss_pred ccCCccCchhHHHHHHH
Confidence 13444556666553
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.95 E-value=6.1e-06 Score=82.50 Aligned_cols=36 Identities=22% Similarity=0.136 Sum_probs=29.6
Q ss_pred CEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCe
Q 000984 413 TTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGI 448 (1198)
Q Consensus 413 ~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~ 448 (1198)
..|.|+||+|||||||++.+.+.+....+.+.+.+.
T Consensus 2 k~v~ItG~~GtGKTtl~~~i~~~l~~~~~~v~~~~~ 37 (189)
T d2i3ba1 2 RHVFLTGPPGVGKTTLIHKASEVLKSSGVPVDGFYT 37 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHHHHHTTCCCEEEEC
T ss_pred cEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEe
Confidence 358999999999999999999999877666655443
|
| >d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Escherichia coli [TaxId: 562]
Probab=96.94 E-value=0.00013 Score=74.17 Aligned_cols=80 Identities=16% Similarity=0.265 Sum_probs=57.8
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHhcccCCCCCe--E----------EECCcccCCCChHHHHhhcceeccccccccccHHH
Q 000984 1070 AGKTVALVGESGSGKSTVVSLLQRFYDPDAGH--I----------TLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRA 1137 (1198)
Q Consensus 1070 ~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~--I----------~IDG~dI~~i~l~~LR~~IsiV~Qdp~LF~gTIre 1137 (1198)
+|..+.|+||||||||||.+.|+.-++-..-. | .+||+|..=++.+...+.+. ++-++..+++..
T Consensus 1 ~G~livi~GPSG~GK~tl~~~L~~~~p~~~~~~~is~TTR~~R~~E~~G~dY~Fvs~~~F~~~i~---~g~flE~~~~~g 77 (205)
T d1s96a_ 1 QGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRPGEVHGEHYFFVNHDEFKEMIS---RDAFLEHAEVFG 77 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHH---TTCEEEEEEETT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhhCCccCceEEEEEeccCCCccccccccceeecHHHHHHHhh---hhhheeEEEECC
Confidence 58899999999999999999887654311111 1 26899999999999887765 777777777776
Q ss_pred HHhcCCCCCCCHHHHHHHHH
Q 000984 1138 NIAYGKGGDATEAEIQAASE 1157 (1198)
Q Consensus 1138 NI~~g~~~~~tdeei~~Al~ 1157 (1198)
| .|| .+-+++.++++
T Consensus 78 ~-~YG----t~~~~v~~~~~ 92 (205)
T d1s96a_ 78 N-YYG----TSREAIEQVLA 92 (205)
T ss_dssp E-EEE----EEHHHHHHHHT
T ss_pred c-eec----cccchHHHHHh
Confidence 6 366 23455555543
|
| >d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.93 E-value=0.00017 Score=71.81 Aligned_cols=66 Identities=29% Similarity=0.344 Sum_probs=45.0
Q ss_pred CCEEEEEcCCCCCHHHHHHHHhcccCCCCCeE----------EECCcccCCCChHHHHhhcceeccccccccccHHHHH
Q 000984 1071 GKTVALVGESGSGKSTVVSLLQRFYDPDAGHI----------TLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANI 1139 (1198)
Q Consensus 1071 GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I----------~IDG~dI~~i~l~~LR~~IsiV~Qdp~LF~gTIreNI 1139 (1198)
|+.+.|+||||||||||++.|..-++.-...+ ..||+|-.-++.+...+.+ .++-++-.+....|.
T Consensus 2 G~iivl~GpsG~GK~tl~~~L~~~~~~~~~~~~~tTR~~r~~e~~G~dy~fvs~~~f~~~~---~~~~f~e~~~~~~~~ 77 (182)
T d1znwa1 2 GRVVVLSGPSAVGKSTVVRCLRERIPNLHFSVSATTRAPRPGEVDGVDYHFIDPTRFQQLI---DQGELLEWAEIHGGL 77 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHSTTCEECCCEESSCCCTTCCBTTTBEECCHHHHHHHH---HTTCEEEEEEEGGGT
T ss_pred CeEEEEECCCCCCHHHHHHHHHhhCCCCeEEEEeeccCCCccccCCcceeeccchhhhhhh---cccccchhhhcccCc
Confidence 88999999999999999999987664322222 3578888777777776553 244444444444443
|
| >d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein Atu3015 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=96.87 E-value=0.00023 Score=69.95 Aligned_cols=35 Identities=29% Similarity=0.474 Sum_probs=28.1
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECC
Q 000984 1070 AGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDG 1106 (1198)
Q Consensus 1070 ~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG 1106 (1198)
.|+.|.|+|++||||||++++|.+-+.. --+.+||
T Consensus 3 ~g~iI~l~G~~GsGKSTia~~La~~lg~--~~~~~~~ 37 (176)
T d1zp6a1 3 GGNILLLSGHPGSGKSTIAEALANLPGV--PKVHFHS 37 (176)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTCSSS--CEEEECT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCC--CEEEecH
Confidence 5889999999999999999999876532 2455665
|
| >d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=96.75 E-value=0.0027 Score=64.65 Aligned_cols=46 Identities=15% Similarity=0.250 Sum_probs=32.4
Q ss_pred CCCEEEEeCCCCCCCHHhHHHHHHHH-HHHh-CCCeEEEEecCcchhh
Q 000984 540 DPRILLLDEATSALDAESEKVVQEAL-DRIM-VNRTTVIVAHRLSTVR 585 (1198)
Q Consensus 540 ~~~illlDe~ts~lD~~~~~~i~~~i-~~~~-~~~t~i~itH~~~~~~ 585 (1198)
+..++|+||...+=|++....+..++ +.+. .+.+++++||..+...
T Consensus 114 ~~sLvliDE~~~gT~~~eg~ala~aile~L~~~~~~~i~tTH~~eL~~ 161 (224)
T d1ewqa2 114 ENSLVLLDEVGRGTSSLDGVAIATAVAEALHERRAYTLFATHYFELTA 161 (224)
T ss_dssp TTEEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEECCCHHHHT
T ss_pred CCcEEeecccccCcchhhhcchHHHHHHHHhhcCcceEEeeechhhhh
Confidence 44589999999999998655444333 3322 3678899999876544
|
| >d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=96.60 E-value=0.0069 Score=62.05 Aligned_cols=43 Identities=14% Similarity=0.160 Sum_probs=29.2
Q ss_pred CCEEEEeCCCCCCCHHhHHHHHHH-HHHHh-C-CCeEEEEecCcch
Q 000984 541 PRILLLDEATSALDAESEKVVQEA-LDRIM-V-NRTTVIVAHRLST 583 (1198)
Q Consensus 541 ~~illlDe~ts~lD~~~~~~i~~~-i~~~~-~-~~t~i~itH~~~~ 583 (1198)
..++|+||+..+=|+.....+..+ ++.+. + +..+++.||..+.
T Consensus 121 ~sLvliDE~~~gT~~~eg~~l~~a~l~~l~~~~~~~~i~tTH~~~l 166 (234)
T d1wb9a2 121 YSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFEL 166 (234)
T ss_dssp TEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCGGG
T ss_pred ccEEeecccccCCChhhhhHHHHHhhhhhhccccceEEEecchHHH
Confidence 459999999999999876655444 44443 3 3466777776543
|
| >d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=96.60 E-value=0.00052 Score=69.62 Aligned_cols=27 Identities=30% Similarity=0.465 Sum_probs=24.0
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHhcccC
Q 000984 1070 AGKTVALVGESGSGKSTVVSLLQRFYD 1096 (1198)
Q Consensus 1070 ~GekvaIVG~SGSGKSTL~~lL~R~yd 1096 (1198)
+|++++++|+||.|||||+|.|.+=.+
T Consensus 94 ~~kt~~~~G~SGVGKSTLiN~L~~~~~ 120 (225)
T d1u0la2 94 KGKISTMAGLSGVGKSSLLNAINPGLK 120 (225)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHSTTCC
T ss_pred cCCeEEEECCCCCCHHHHHHhhcchhh
Confidence 589999999999999999999976444
|
| >d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Polynucleotide kinase, kinase domain species: Bacteriophage T4 [TaxId: 10665]
Probab=96.56 E-value=0.0016 Score=61.93 Aligned_cols=31 Identities=29% Similarity=0.205 Sum_probs=23.8
Q ss_pred CEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEEC
Q 000984 413 TTAALVGQSGSGKSTVISLIERFYDPQAGEVLID 446 (1198)
Q Consensus 413 ~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~ 446 (1198)
+++.|+|++||||||+++.|.... .|...++
T Consensus 3 klIii~G~pGsGKTTla~~L~~~~---~~~~~~~ 33 (152)
T d1ly1a_ 3 KIILTIGCPGSGKSTWAREFIAKN---PGFYNIN 33 (152)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHS---TTEEEEC
T ss_pred EEEEEECCCCCCHHHHHHHHHHhC---CCCEEec
Confidence 478899999999999999886543 2555554
|
| >d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric traffic ATPase, HP0525 species: Helicobacter pylori [TaxId: 210]
Probab=96.50 E-value=0.0038 Score=67.36 Aligned_cols=37 Identities=32% Similarity=0.475 Sum_probs=30.0
Q ss_pred EeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEE
Q 000984 409 ISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLI 445 (1198)
Q Consensus 409 i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i 445 (1198)
++.|.-+.|+|++||||||++++|+++++|..=-|.|
T Consensus 163 v~~~~nili~G~tgSGKTT~l~al~~~i~~~~rivti 199 (323)
T d1g6oa_ 163 IAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISI 199 (323)
T ss_dssp HHHTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEE
T ss_pred HHhCCCEEEEeeccccchHHHHHHhhhcccccceeec
Confidence 4556679999999999999999999999876533333
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Probab=96.48 E-value=0.00045 Score=67.26 Aligned_cols=31 Identities=23% Similarity=0.169 Sum_probs=24.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcccCCCCCeEE
Q 000984 1073 TVALVGESGSGKSTVVSLLQRFYDPDAGHIT 1103 (1198)
Q Consensus 1073 kvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~ 1103 (1198)
.++|+|++|||||||++-|.+-+....-++-
T Consensus 4 vi~itG~~GSGKTTL~~~L~~~l~~~g~~v~ 34 (170)
T d1np6a_ 4 LLAFAAWSGTGKTTLLKKLIPALCARGIRPG 34 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHTTCCEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHCCCeEE
Confidence 5899999999999999999887664433333
|
| >d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Gene 4 protein (g4p, DNA primase), helicase domain species: Bacteriophage T7 [TaxId: 10760]
Probab=96.47 E-value=0.0057 Score=64.59 Aligned_cols=34 Identities=21% Similarity=0.234 Sum_probs=27.1
Q ss_pred cccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhc
Q 000984 401 IFSGFSISISSGTTAALVGQSGSGKSTVISLIER 434 (1198)
Q Consensus 401 ~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g 434 (1198)
-|+++.-=+.+|+++.|.|++|+|||||+.-++-
T Consensus 24 ~lD~~~~G~~~G~l~vi~G~~G~GKT~~~~~la~ 57 (277)
T d1cr2a_ 24 GINDKTLGARGGEVIMVTSGSGMGKSTFVRQQAL 57 (277)
T ss_dssp THHHHHCSBCTTCEEEEECSTTSSHHHHHHHHHH
T ss_pred hHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHH
Confidence 4555443478999999999999999999877663
|
| >d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=96.45 E-value=0.00075 Score=68.41 Aligned_cols=34 Identities=29% Similarity=0.445 Sum_probs=26.5
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEE
Q 000984 411 SGTTAALVGQSGSGKSTVISLIERFYDPQAGEVL 444 (1198)
Q Consensus 411 ~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~ 444 (1198)
+|+.++++|+||+|||||++.|.+.....-|.|.
T Consensus 94 ~~kt~~~~G~SGVGKSTLiN~L~~~~~~~T~~vs 127 (225)
T d1u0la2 94 KGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVS 127 (225)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHSTTCCCC-----
T ss_pred cCCeEEEECCCCCCHHHHHHhhcchhhhhccCcc
Confidence 5899999999999999999999987766556653
|
| >d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein Atu3015 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=96.34 E-value=0.00064 Score=66.55 Aligned_cols=26 Identities=35% Similarity=0.543 Sum_probs=24.1
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhccC
Q 000984 411 SGTTAALVGQSGSGKSTVISLIERFY 436 (1198)
Q Consensus 411 ~g~~~~ivG~~GsGKStl~~~l~g~~ 436 (1198)
.|+++.|+|++||||||+.+.|...+
T Consensus 3 ~g~iI~l~G~~GsGKSTia~~La~~l 28 (176)
T d1zp6a1 3 GGNILLLSGHPGSGKSTIAEALANLP 28 (176)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999999999865
|
| >d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.32 E-value=0.0008 Score=66.67 Aligned_cols=26 Identities=35% Similarity=0.463 Sum_probs=24.2
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhccCC
Q 000984 412 GTTAALVGQSGSGKSTVISLIERFYD 437 (1198)
Q Consensus 412 g~~~~ivG~~GsGKStl~~~l~g~~~ 437 (1198)
|.++.|+||||||||||++.|...++
T Consensus 2 G~iivl~GpsG~GK~tl~~~L~~~~~ 27 (182)
T d1znwa1 2 GRVVVLSGPSAVGKSTVVRCLRERIP 27 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CeEEEEECCCCCCHHHHHHHHHhhCC
Confidence 89999999999999999999988775
|
| >d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=96.31 E-value=0.0071 Score=62.32 Aligned_cols=27 Identities=19% Similarity=0.290 Sum_probs=24.4
Q ss_pred EeCCCEEEEEcCCCCcHHHHHHHHhcc
Q 000984 409 ISSGTTAALVGQSGSGKSTVISLIERF 435 (1198)
Q Consensus 409 i~~g~~~~ivG~~GsGKStl~~~l~g~ 435 (1198)
+++|+.+.|.|++|||||+|+.-++-.
T Consensus 23 i~~gsl~li~G~pGsGKT~l~~qia~~ 49 (242)
T d1tf7a2 23 FFKDSIILATGATGTGKTLLVSRFVEN 49 (242)
T ss_dssp EESSCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CcCCeEEEEEeCCCCCHHHHHHHHHHH
Confidence 889999999999999999999777654
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Probab=96.29 E-value=0.00062 Score=66.24 Aligned_cols=26 Identities=23% Similarity=0.284 Sum_probs=22.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhccCCCC
Q 000984 414 TAALVGQSGSGKSTVISLIERFYDPQ 439 (1198)
Q Consensus 414 ~~~ivG~~GsGKStl~~~l~g~~~~~ 439 (1198)
.++|+|++|||||||++.|.+.+...
T Consensus 4 vi~itG~~GSGKTTL~~~L~~~l~~~ 29 (170)
T d1np6a_ 4 LLAFAAWSGTGKTTLLKKLIPALCAR 29 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHC
Confidence 68999999999999999999876543
|
| >d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=96.27 E-value=0.00082 Score=65.94 Aligned_cols=28 Identities=32% Similarity=0.391 Sum_probs=24.8
Q ss_pred eCCCEEEEEcCCCCCHHHHHHHHhcccC
Q 000984 1069 RAGKTVALVGESGSGKSTVVSLLQRFYD 1096 (1198)
Q Consensus 1069 ~~GekvaIVG~SGSGKSTL~~lL~R~yd 1096 (1198)
++|-.|.|+|.+||||||++++|.+-+.
T Consensus 4 ~~g~~I~l~G~~GsGKTTia~~La~~L~ 31 (183)
T d1m8pa3 4 TQGFTIFLTGYMNSGKDAIARALQVTLN 31 (183)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4689999999999999999999997653
|
| >d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=96.16 E-value=0.0013 Score=65.23 Aligned_cols=43 Identities=28% Similarity=0.374 Sum_probs=31.8
Q ss_pred CEEEEEcCCCCCHHHHHHHHhccc------------CCCCCeEEECCcccCCCCh
Q 000984 1072 KTVALVGESGSGKSTVVSLLQRFY------------DPDAGHITLDGVEIQKLQL 1114 (1198)
Q Consensus 1072 ekvaIVG~SGSGKSTL~~lL~R~y------------dp~~G~I~IDG~dI~~i~l 1114 (1198)
=+|||+|++|+|||||++.|++-- .+..|.+.++|.++..++.
T Consensus 9 ~kV~iiG~~~~GKSTLin~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~d~ 63 (186)
T d1mkya2 9 IKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDT 63 (186)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEEEESSC
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCcceeecccccccccceeeeccCCceeeeecc
Confidence 379999999999999999998632 2235677888876655544
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.06 E-value=0.00023 Score=70.37 Aligned_cols=58 Identities=16% Similarity=0.061 Sum_probs=40.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHhhcceecccccc
Q 000984 1073 TVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMGLVSQEPVL 1130 (1198)
Q Consensus 1073 kvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~~i~l~~LR~~IsiV~Qdp~L 1130 (1198)
.|.|+||.|+|||||++.+.+.+....+.+.+.+.+........+...+.-+.|+...
T Consensus 3 ~v~ItG~~GtGKTtl~~~i~~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 60 (189)
T d2i3ba1 3 HVFLTGPPGVGKTTLIHKASEVLKSSGVPVDGFYTEEVRQGGRRIGFDVVTLSGTRGP 60 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHHHHTTCCCEEEECCEEETTSSEEEEEEEETTSCEEE
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeccccccccccccccccccchhhh
Confidence 4899999999999999999999988777776666554433333333334444455433
|
| >d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric replicative helicase repA species: Escherichia coli [TaxId: 562]
Probab=96.03 E-value=0.023 Score=59.46 Aligned_cols=24 Identities=38% Similarity=0.547 Sum_probs=21.4
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHh
Q 000984 410 SSGTTAALVGQSGSGKSTVISLIE 433 (1198)
Q Consensus 410 ~~g~~~~ivG~~GsGKStl~~~l~ 433 (1198)
.||+++.|+|++|+|||||+..|+
T Consensus 27 ~pg~~~~i~G~~G~GKS~l~l~la 50 (274)
T d1nlfa_ 27 VAGTVGALVSPGGAGKSMLALQLA 50 (274)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHH
T ss_pred cCCcEEEEEeCCCCCHHHHHHHHH
Confidence 469999999999999999997665
|
| >d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=95.93 E-value=0.00075 Score=68.63 Aligned_cols=34 Identities=29% Similarity=0.441 Sum_probs=22.9
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEE
Q 000984 411 SGTTAALVGQSGSGKSTVISLIERFYDPQAGEVL 444 (1198)
Q Consensus 411 ~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~ 444 (1198)
+|+.++++|+||+|||||+++|.+.....-|.|.
T Consensus 96 ~~~~~vl~G~SGVGKSSLiN~L~~~~~~~t~~vs 129 (231)
T d1t9ha2 96 QDKTTVFAGQSGVGKSSLLNAISPELGLRTNEIS 129 (231)
T ss_dssp TTSEEEEEESHHHHHHHHHHHHCC----------
T ss_pred ccceEEEECCCCccHHHHHHhhccHhHhhhcccc
Confidence 5889999999999999999999998766666664
|
| >d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=95.93 E-value=0.00067 Score=69.00 Aligned_cols=34 Identities=26% Similarity=0.426 Sum_probs=22.6
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEE
Q 000984 1070 AGKTVALVGESGSGKSTVVSLLQRFYDPDAGHIT 1103 (1198)
Q Consensus 1070 ~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~ 1103 (1198)
+|+++.++|+||.|||||+|.|.+=.....|.|.
T Consensus 96 ~~~~~vl~G~SGVGKSSLiN~L~~~~~~~t~~vs 129 (231)
T d1t9ha2 96 QDKTTVFAGQSGVGKSSLLNAISPELGLRTNEIS 129 (231)
T ss_dssp TTSEEEEEESHHHHHHHHHHHHCC----------
T ss_pred ccceEEEECCCCccHHHHHHhhccHhHhhhcccc
Confidence 5889999999999999999999976554455544
|
| >d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Bacillus stearothermophilus [TaxId: 1422]
Probab=95.93 E-value=0.0015 Score=63.47 Aligned_cols=37 Identities=22% Similarity=0.247 Sum_probs=26.7
Q ss_pred CEEEEEcCCCCCHHHHHHHHhcccCCCC---CeEEECCcc
Q 000984 1072 KTVALVGESGSGKSTVVSLLQRFYDPDA---GHITLDGVE 1108 (1198)
Q Consensus 1072 ekvaIVG~SGSGKSTL~~lL~R~ydp~~---G~I~IDG~d 1108 (1198)
+.++|+|++|||||||+.-|.+.+.... |.|.-|+.+
T Consensus 2 kii~I~G~~gSGKTTli~~l~~~L~~~g~~v~vik~d~~~ 41 (165)
T d1xjca_ 2 NVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVKHHGHG 41 (165)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC--
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHhCCCeEEEEEeccCc
Confidence 3679999999999999998887776543 344445543
|
| >d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.92 E-value=0.0019 Score=64.08 Aligned_cols=60 Identities=23% Similarity=0.407 Sum_probs=41.2
Q ss_pred EEEEcCCCCCHHHHHHHHhcccC-------------CCCCeEEECCcccCCCChHHHHhhcceeccccccccccHHHH
Q 000984 1074 VALVGESGSGKSTVVSLLQRFYD-------------PDAGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRAN 1138 (1198)
Q Consensus 1074 vaIVG~SGSGKSTL~~lL~R~yd-------------p~~G~I~IDG~dI~~i~l~~LR~~IsiV~Qdp~LF~gTIreN 1138 (1198)
|.|+|||||||+||++.|+.-++ |..|+ +||+|..-++.+...+.+. +.-++..+.+..|
T Consensus 4 Ivl~GpsG~GK~tl~~~L~~~~~~~~~~~~~~TTR~~r~~E--~~g~dy~fvs~~~f~~~~~---~g~f~e~~~~~g~ 76 (186)
T d1gkya_ 4 IVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGE--VNGKDYNFVSVDEFKSMIK---NNEFIEWAQFSGN 76 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHCTTTEEECCEEECSCCCTTC--CBTTTEEECCHHHHHHHHH---TTCEEEEEEETTE
T ss_pred EEEECCCCCCHHHHHHHHHHhCCcceeEEEeeccCCCCCCC--cCCccceeccHHHHHHHHh---cccceeeeEEccc
Confidence 78999999999999998865432 23443 4888888888887766544 4444444444333
|
| >d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein BH3686 species: Bacillus halodurans [TaxId: 86665]
Probab=95.89 E-value=0.0013 Score=63.86 Aligned_cols=34 Identities=29% Similarity=0.375 Sum_probs=27.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCccc
Q 000984 1073 TVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEI 1109 (1198)
Q Consensus 1073 kvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI 1109 (1198)
.+.|+|++||||||+++.|.+-+. +...++|-++
T Consensus 4 lI~i~G~~GsGKTTva~~L~~~~~---~~~~~~~d~~ 37 (176)
T d2bdta1 4 LYIITGPAGVGKSTTCKRLAAQLD---NSAYIEGDII 37 (176)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSS---SEEEEEHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC---CCEEEehHHH
Confidence 589999999999999999998774 4566665444
|
| >d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein rbstp0775 species: Bacillus stearothermophilus [TaxId: 1422]
Probab=95.88 E-value=0.0014 Score=65.36 Aligned_cols=25 Identities=28% Similarity=0.363 Sum_probs=22.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhcccCC
Q 000984 1073 TVALVGESGSGKSTVVSLLQRFYDP 1097 (1198)
Q Consensus 1073 kvaIVG~SGSGKSTL~~lL~R~ydp 1097 (1198)
.|||.|++|||||||++.|...+..
T Consensus 24 iIgI~G~~GSGKSTla~~L~~~l~~ 48 (198)
T d1rz3a_ 24 VLGIDGLSRSGKTTLANQLSQTLRE 48 (198)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcc
Confidence 5999999999999999999877653
|
| >d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Probable kinase LmjF30.1890 species: Leishmania major [TaxId: 5664]
Probab=95.86 E-value=0.0019 Score=62.82 Aligned_cols=28 Identities=21% Similarity=0.521 Sum_probs=24.9
Q ss_pred eCCCEEEEEcCCCCCHHHHHHHHhcccC
Q 000984 1069 RAGKTVALVGESGSGKSTVVSLLQRFYD 1096 (1198)
Q Consensus 1069 ~~GekvaIVG~SGSGKSTL~~lL~R~yd 1096 (1198)
|+|-+|.|.|++||||||+++.|..-+.
T Consensus 3 pk~~~I~i~G~~GsGKTT~~~~La~~l~ 30 (174)
T d1y63a_ 3 PKGINILITGTPGTGKTSMAEMIAAELD 30 (174)
T ss_dssp CSSCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHhC
Confidence 5788999999999999999999977654
|
| >d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Bacillus subtilis [TaxId: 1423]
Probab=95.82 E-value=0.0016 Score=65.11 Aligned_cols=22 Identities=36% Similarity=0.498 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcc
Q 000984 1073 TVALVGESGSGKSTVVSLLQRF 1094 (1198)
Q Consensus 1073 kvaIVG~SGSGKSTL~~lL~R~ 1094 (1198)
+|||||++|+|||||++.|.+.
T Consensus 25 ~I~lvG~~n~GKSTLin~L~g~ 46 (195)
T d1svia_ 25 EIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHhcCC
Confidence 6999999999999999999863
|
| >d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain species: Haemophilus influenzae [TaxId: 727]
Probab=95.82 E-value=0.0014 Score=64.47 Aligned_cols=25 Identities=44% Similarity=0.684 Sum_probs=22.5
Q ss_pred CEEEEEcCCCCCHHHHHHHHhcccC
Q 000984 1072 KTVALVGESGSGKSTVVSLLQRFYD 1096 (1198)
Q Consensus 1072 ekvaIVG~SGSGKSTL~~lL~R~yd 1096 (1198)
++|+|+|++|||||||++.|..-+.
T Consensus 8 K~I~i~G~~GsGKTTla~~La~~~~ 32 (192)
T d1lw7a2 8 KTVAILGGESSGKSVLVNKLAAVFN 32 (192)
T ss_dssp EEEEEECCTTSHHHHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4799999999999999999988663
|
| >d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Chloramphenicol phosphotransferase domain: Chloramphenicol phosphotransferase species: Streptomyces venezuelae [TaxId: 54571]
Probab=95.75 E-value=0.0023 Score=62.36 Aligned_cols=26 Identities=35% Similarity=0.465 Sum_probs=23.5
Q ss_pred CCEEEEEcCCCCCHHHHHHHHhcccC
Q 000984 1071 GKTVALVGESGSGKSTVVSLLQRFYD 1096 (1198)
Q Consensus 1071 GekvaIVG~SGSGKSTL~~lL~R~yd 1096 (1198)
.+.|.|.|++||||||+++.|.+.+.
T Consensus 3 ~kiI~l~G~~GsGKsTva~~L~~~l~ 28 (178)
T d1qhxa_ 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHcC
Confidence 46789999999999999999999875
|
| >d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Bacillus stearothermophilus [TaxId: 1422]
Probab=95.69 E-value=0.0018 Score=62.76 Aligned_cols=27 Identities=22% Similarity=0.162 Sum_probs=23.6
Q ss_pred CEEEEEcCCCCcHHHHHHHHhccCCCC
Q 000984 413 TTAALVGQSGSGKSTVISLIERFYDPQ 439 (1198)
Q Consensus 413 ~~~~ivG~~GsGKStl~~~l~g~~~~~ 439 (1198)
..++|+|++|||||||+..|.+.+...
T Consensus 2 kii~I~G~~gSGKTTli~~l~~~L~~~ 28 (165)
T d1xjca_ 2 NVWQVVGYKHSGKTTLMEKWVAAAVRE 28 (165)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHhC
Confidence 368999999999999999999887654
|
| >d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Polynucleotide kinase, kinase domain species: Bacteriophage T4 [TaxId: 10665]
Probab=95.68 E-value=0.0022 Score=61.00 Aligned_cols=34 Identities=26% Similarity=0.328 Sum_probs=25.0
Q ss_pred CEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcc
Q 000984 1072 KTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVE 1108 (1198)
Q Consensus 1072 ekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~d 1108 (1198)
+.|.|+|++||||||+++.|.+-. .|...++.-|
T Consensus 3 klIii~G~pGsGKTTla~~L~~~~---~~~~~~~~d~ 36 (152)
T d1ly1a_ 3 KIILTIGCPGSGKSTWAREFIAKN---PGFYNINRDD 36 (152)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHS---TTEEEECHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHhC---CCCEEechHH
Confidence 458899999999999999876522 3556655444
|
| >d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Escherichia coli [TaxId: 562]
Probab=95.68 E-value=0.019 Score=59.50 Aligned_cols=27 Identities=22% Similarity=0.284 Sum_probs=23.4
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhccCC
Q 000984 411 SGTTAALVGQSGSGKSTVISLIERFYD 437 (1198)
Q Consensus 411 ~g~~~~ivG~~GsGKStl~~~l~g~~~ 437 (1198)
+..-+.+.||+|||||+++++|..++.
T Consensus 44 ~~~~iLL~GppGtGKT~la~~iA~~~~ 70 (256)
T d1lv7a_ 44 IPKGVLMVGPPGTGKTLLAKAIAGEAK 70 (256)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCCeEEeeCCCCCCccHHHHHHHHHcC
Confidence 345688999999999999999999874
|
| >d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Pantothenate kinase PanK species: Escherichia coli [TaxId: 562]
Probab=95.67 E-value=0.0035 Score=66.78 Aligned_cols=48 Identities=21% Similarity=0.385 Sum_probs=34.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHhhcceeccccccccccHHH
Q 000984 1073 TVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRA 1137 (1198)
Q Consensus 1073 kvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~~i~l~~LR~~IsiV~Qdp~LF~gTIre 1137 (1198)
.|||.|++||||||+++.|..+..-..+. .++.+|++|.++.+...++
T Consensus 82 iIGIaG~sgSGKSTla~~L~~lL~~~~~~-----------------~~v~~Is~D~F~~~~~~l~ 129 (308)
T d1sq5a_ 82 IISIAGSVAVGKSTTARVLQALLSRWPEH-----------------RRVELITTDGFLHPNQVLK 129 (308)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHTTSTTC-----------------CCEEEEEGGGGBCCHHHHH
T ss_pred EEEEeCCCCCCCcHHHHHHHHHHhhhcCC-----------------CceEEEeeeeeECCchHHH
Confidence 57999999999999999998876421110 2356778888877655543
|
| >d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=95.64 E-value=0.0025 Score=62.61 Aligned_cols=31 Identities=23% Similarity=0.281 Sum_probs=25.7
Q ss_pred CEEEEEcCCCCCHHHHHHHHhcccCCCCCeE
Q 000984 1072 KTVALVGESGSGKSTVVSLLQRFYDPDAGHI 1102 (1198)
Q Consensus 1072 ekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I 1102 (1198)
+.|+|.|++||||||+++.|...+......+
T Consensus 2 kiI~i~G~~GsGKsT~~~~L~~~l~~~~~~~ 32 (190)
T d1khta_ 2 KVVVVTGVPGVGSTTSSQLAMDNLRKEGVNY 32 (190)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHTTTCCC
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHcCCCe
Confidence 5799999999999999999988776554443
|
| >d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=95.64 E-value=0.0023 Score=62.52 Aligned_cols=27 Identities=26% Similarity=0.343 Sum_probs=24.3
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHhccC
Q 000984 410 SSGTTAALVGQSGSGKSTVISLIERFY 436 (1198)
Q Consensus 410 ~~g~~~~ivG~~GsGKStl~~~l~g~~ 436 (1198)
++|-+|.|+|++||||||+.+.|..-+
T Consensus 4 ~~g~~I~l~G~~GsGKTTia~~La~~L 30 (183)
T d1m8pa3 4 TQGFTIFLTGYMNSGKDAIARALQVTL 30 (183)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 368899999999999999999998755
|
| >d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=95.59 E-value=0.0037 Score=61.63 Aligned_cols=22 Identities=36% Similarity=0.484 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcc
Q 000984 414 TAALVGQSGSGKSTVISLIERF 435 (1198)
Q Consensus 414 ~~~ivG~~GsGKStl~~~l~g~ 435 (1198)
+|+|+|++|+|||||+++|+|.
T Consensus 10 kV~iiG~~~~GKSTLin~l~~~ 31 (186)
T d1mkya2 10 KVAIVGRPNVGKSTLFNAILNK 31 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 6899999999999999999974
|
| >d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.59 E-value=0.017 Score=56.02 Aligned_cols=25 Identities=32% Similarity=0.310 Sum_probs=21.8
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHhc
Q 000984 410 SSGTTAALVGQSGSGKSTVISLIER 434 (1198)
Q Consensus 410 ~~g~~~~ivG~~GsGKStl~~~l~g 434 (1198)
++-+++.++|++||||||+.+.++.
T Consensus 12 ~~p~liil~G~pGsGKST~a~~l~~ 36 (172)
T d1yj5a2 12 PNPEVVVAVGFPGAGKSTFIQEHLV 36 (172)
T ss_dssp SSCCEEEEECCTTSSHHHHHHHHTG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4567999999999999999998864
|
| >d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein engB species: Pyrococcus horikoshii [TaxId: 53953]
Probab=95.56 E-value=0.0023 Score=63.03 Aligned_cols=21 Identities=38% Similarity=0.537 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 000984 1073 TVALVGESGSGKSTVVSLLQR 1093 (1198)
Q Consensus 1073 kvaIVG~SGSGKSTL~~lL~R 1093 (1198)
+|+|||++|+|||||++.|.+
T Consensus 2 ~I~lvG~~nvGKSsLin~l~~ 22 (184)
T d2cxxa1 2 TIIFAGRSNVGKSTLIYRLTG 22 (184)
T ss_dssp EEEEEEBTTSSHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 689999999999999999986
|
| >d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Escherichia coli [TaxId: 562]
Probab=95.54 E-value=0.0029 Score=63.65 Aligned_cols=27 Identities=30% Similarity=0.401 Sum_probs=24.3
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhccCC
Q 000984 411 SGTTAALVGQSGSGKSTVISLIERFYD 437 (1198)
Q Consensus 411 ~g~~~~ivG~~GsGKStl~~~l~g~~~ 437 (1198)
.|.++.|+||||||||||.+.|+...+
T Consensus 1 ~G~livi~GPSG~GK~tl~~~L~~~~p 27 (205)
T d1s96a_ 1 QGTLYIVSAPSGAGKSSLIQALLKTQP 27 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhhCC
Confidence 489999999999999999999987754
|
| >d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Gluconate kinase domain: Gluconate kinase species: Escherichia coli [TaxId: 562]
Probab=95.51 E-value=0.0028 Score=61.52 Aligned_cols=27 Identities=37% Similarity=0.425 Sum_probs=24.0
Q ss_pred eCCCEEEEEcCCCCCHHHHHHHHhccc
Q 000984 1069 RAGKTVALVGESGSGKSTVVSLLQRFY 1095 (1198)
Q Consensus 1069 ~~GekvaIVG~SGSGKSTL~~lL~R~y 1095 (1198)
+.+..+.|+|++||||||+++.|.+-+
T Consensus 4 ~~~~iivl~G~~GsGKsT~a~~La~~l 30 (171)
T d1knqa_ 4 HDHHIYVLMGVSGSGKSAVASEVAHQL 30 (171)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 457789999999999999999998866
|
| >d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]
Probab=95.51 E-value=0.0023 Score=62.05 Aligned_cols=24 Identities=29% Similarity=0.376 Sum_probs=21.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhcccC
Q 000984 1073 TVALVGESGSGKSTVVSLLQRFYD 1096 (1198)
Q Consensus 1073 kvaIVG~SGSGKSTL~~lL~R~yd 1096 (1198)
+|.|+|++||||||+++.|..-+.
T Consensus 6 ~I~i~G~pGsGKTTia~~La~~l~ 29 (173)
T d1rkba_ 6 NILLTGTPGVGKTTLGKELASKSG 29 (173)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
Confidence 578999999999999999976653
|
| >d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.44 E-value=0.017 Score=60.46 Aligned_cols=28 Identities=18% Similarity=0.322 Sum_probs=24.4
Q ss_pred EeCCCEEEEEcCCCCcHHHHHHHHhccC
Q 000984 409 ISSGTTAALVGQSGSGKSTVISLIERFY 436 (1198)
Q Consensus 409 i~~g~~~~ivG~~GsGKStl~~~l~g~~ 436 (1198)
+++..-+.+.||+|||||+|++++++.+
T Consensus 38 ~~~~~giLL~Gp~GtGKT~l~~ala~~~ 65 (265)
T d1r7ra3 38 MTPSKGVLFYGPPGCGKTLLAKAIANEC 65 (265)
T ss_dssp CCCCCEEEEBCCTTSSHHHHHHHHHHHT
T ss_pred CCCCCeEEEECCCCCcchhHHHHHHHHh
Confidence 4455569999999999999999999987
|
| >d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.44 E-value=0.0017 Score=64.64 Aligned_cols=27 Identities=44% Similarity=0.557 Sum_probs=24.1
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHhcccC
Q 000984 1070 AGKTVALVGESGSGKSTVVSLLQRFYD 1096 (1198)
Q Consensus 1070 ~GekvaIVG~SGSGKSTL~~lL~R~yd 1096 (1198)
.|-.|-|+|++||||||++++|.+.+.
T Consensus 18 ~g~vI~L~G~pGSGKTTiAk~La~~l~ 44 (195)
T d1x6va3 18 RGCTVWLTGLSGAGKTTVSMALEEYLV 44 (195)
T ss_dssp CCEEEEEESSCHHHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 577999999999999999999988654
|
| >d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Bacillus subtilis [TaxId: 1423]
Probab=95.43 E-value=0.0024 Score=63.15 Aligned_cols=21 Identities=43% Similarity=0.599 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 000984 1073 TVALVGESGSGKSTVVSLLQR 1093 (1198)
Q Consensus 1073 kvaIVG~SGSGKSTL~~lL~R 1093 (1198)
.|||||++++|||||++.|.+
T Consensus 3 ~VaiiG~~nvGKSSLin~L~~ 23 (185)
T d1lnza2 3 DVGLVGFPSVGKSTLLSVVSS 23 (185)
T ss_dssp CEEEESSTTSSHHHHHHHSEE
T ss_pred eEEEECCCCCCHHHHHHHHhC
Confidence 489999999999999999976
|
| >d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Chloramphenicol phosphotransferase domain: Chloramphenicol phosphotransferase species: Streptomyces venezuelae [TaxId: 54571]
Probab=95.43 E-value=0.0035 Score=60.94 Aligned_cols=26 Identities=23% Similarity=0.344 Sum_probs=23.5
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhccCC
Q 000984 412 GTTAALVGQSGSGKSTVISLIERFYD 437 (1198)
Q Consensus 412 g~~~~ivG~~GsGKStl~~~l~g~~~ 437 (1198)
...|.|.|++||||||+.+.|...+.
T Consensus 3 ~kiI~l~G~~GsGKsTva~~L~~~l~ 28 (178)
T d1qhxa_ 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHcC
Confidence 46899999999999999999999874
|
| >d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Gluconate kinase domain: Gluconate kinase species: Escherichia coli [TaxId: 562]
Probab=95.40 E-value=0.003 Score=61.28 Aligned_cols=27 Identities=37% Similarity=0.412 Sum_probs=24.1
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHhccC
Q 000984 410 SSGTTAALVGQSGSGKSTVISLIERFY 436 (1198)
Q Consensus 410 ~~g~~~~ivG~~GsGKStl~~~l~g~~ 436 (1198)
+.+.++.|+|++||||||+.+.|...+
T Consensus 4 ~~~~iivl~G~~GsGKsT~a~~La~~l 30 (171)
T d1knqa_ 4 HDHHIYVLMGVSGSGKSAVASEVAHQL 30 (171)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 457889999999999999999998765
|
| >d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Probable kinase LmjF30.1890 species: Leishmania major [TaxId: 5664]
Probab=95.38 E-value=0.0036 Score=60.78 Aligned_cols=27 Identities=22% Similarity=0.482 Sum_probs=24.3
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHhccC
Q 000984 410 SSGTTAALVGQSGSGKSTVISLIERFY 436 (1198)
Q Consensus 410 ~~g~~~~ivG~~GsGKStl~~~l~g~~ 436 (1198)
|+|-.++|+|++||||||+.+.|...+
T Consensus 3 pk~~~I~i~G~~GsGKTT~~~~La~~l 29 (174)
T d1y63a_ 3 PKGINILITGTPGTGKTSMAEMIAAEL 29 (174)
T ss_dssp CSSCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHh
Confidence 467889999999999999999998765
|
| >d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Uridine-cytidine kinase 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.36 E-value=0.0032 Score=63.80 Aligned_cols=23 Identities=26% Similarity=0.491 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhccc
Q 000984 1073 TVALVGESGSGKSTVVSLLQRFY 1095 (1198)
Q Consensus 1073 kvaIVG~SGSGKSTL~~lL~R~y 1095 (1198)
.|||.|+|||||||+++.|...+
T Consensus 4 iIgI~G~~gSGKSTla~~L~~~l 26 (213)
T d1uj2a_ 4 LIGVSGGTASGKSSVCAKIVQLL 26 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48999999999999999886654
|
| >d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Escherichia coli [TaxId: 562]
Probab=95.34 E-value=0.0031 Score=60.42 Aligned_cols=24 Identities=38% Similarity=0.542 Sum_probs=21.3
Q ss_pred CEEEEEcCCCCCHHHHHHHHhccc
Q 000984 1072 KTVALVGESGSGKSTVVSLLQRFY 1095 (1198)
Q Consensus 1072 ekvaIVG~SGSGKSTL~~lL~R~y 1095 (1198)
..|.|+|++||||||+.++|..-+
T Consensus 3 k~I~l~G~~GsGKSTvak~La~~L 26 (169)
T d1kaga_ 3 RNIFLVGPMGAGKSTIGRQLAQQL 26 (169)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHh
Confidence 358899999999999999998765
|
| >d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein rbstp0775 species: Bacillus stearothermophilus [TaxId: 1422]
Probab=95.33 E-value=0.0033 Score=62.43 Aligned_cols=24 Identities=25% Similarity=0.331 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhccCC
Q 000984 414 TAALVGQSGSGKSTVISLIERFYD 437 (1198)
Q Consensus 414 ~~~ivG~~GsGKStl~~~l~g~~~ 437 (1198)
+|||.|++|||||||.+.|...+.
T Consensus 24 iIgI~G~~GSGKSTla~~L~~~l~ 47 (198)
T d1rz3a_ 24 VLGIDGLSRSGKTTLANQLSQTLR 47 (198)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Confidence 689999999999999999986654
|
| >d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=95.30 E-value=0.0037 Score=60.77 Aligned_cols=22 Identities=41% Similarity=0.528 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhcc
Q 000984 1073 TVALVGESGSGKSTVVSLLQRF 1094 (1198)
Q Consensus 1073 kvaIVG~SGSGKSTL~~lL~R~ 1094 (1198)
+|+|+|++|+|||||++.|.+-
T Consensus 2 ~V~liG~~n~GKSsLi~~L~~~ 23 (171)
T d1mkya1 2 TVLIVGRPNVGKSTLFNKLVKK 23 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHC-
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 7999999999999999999864
|
| >d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=95.29 E-value=0.0021 Score=64.89 Aligned_cols=24 Identities=25% Similarity=0.530 Sum_probs=22.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhcccC
Q 000984 1073 TVALVGESGSGKSTVVSLLQRFYD 1096 (1198)
Q Consensus 1073 kvaIVG~SGSGKSTL~~lL~R~yd 1096 (1198)
.|.+||++||||||+++.|.+.+.
T Consensus 4 li~l~GlpgsGKSTla~~L~~~l~ 27 (213)
T d1bifa1 4 LIVMVGLPARGKTYISKKLTRYLN 27 (213)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 589999999999999999998775
|
| >d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain species: Haemophilus influenzae [TaxId: 727]
Probab=95.28 E-value=0.0031 Score=61.83 Aligned_cols=24 Identities=29% Similarity=0.573 Sum_probs=22.1
Q ss_pred CEEEEEcCCCCcHHHHHHHHhccC
Q 000984 413 TTAALVGQSGSGKSTVISLIERFY 436 (1198)
Q Consensus 413 ~~~~ivG~~GsGKStl~~~l~g~~ 436 (1198)
.+|+|+|++|||||||++.|...+
T Consensus 8 K~I~i~G~~GsGKTTla~~La~~~ 31 (192)
T d1lw7a2 8 KTVAILGGESSGKSVLVNKLAAVF 31 (192)
T ss_dssp EEEEEECCTTSHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 479999999999999999999876
|
| >d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable tRNA modification GTPase TrmE (MnmE), G domain species: Escherichia coli [TaxId: 562]
Probab=95.26 E-value=0.0036 Score=60.06 Aligned_cols=24 Identities=29% Similarity=0.515 Sum_probs=21.3
Q ss_pred CCEEEEEcCCCCCHHHHHHHHhcc
Q 000984 1071 GKTVALVGESGSGKSTVVSLLQRF 1094 (1198)
Q Consensus 1071 GekvaIVG~SGSGKSTL~~lL~R~ 1094 (1198)
|=+|+|||++|+|||||++.|.+-
T Consensus 1 ~~kI~lvG~~nvGKSsLin~l~~~ 24 (161)
T d2gj8a1 1 GMKVVIAGRPNAGKSSLLNALAGR 24 (161)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 458999999999999999999753
|
| >d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=95.22 E-value=0.0031 Score=63.65 Aligned_cols=43 Identities=35% Similarity=0.370 Sum_probs=33.3
Q ss_pred eCCCEEEEEcCCCCCHHHHHHHHhccc-CC-CCCeEEECCcccCC
Q 000984 1069 RAGKTVALVGESGSGKSTVVSLLQRFY-DP-DAGHITLDGVEIQK 1111 (1198)
Q Consensus 1069 ~~GekvaIVG~SGSGKSTL~~lL~R~y-dp-~~G~I~IDG~dI~~ 1111 (1198)
++|..|-|.|.||||||||++.|.+-+ +. .--.+.+||-++++
T Consensus 22 ~kg~vIwltGlsGsGKTTia~~L~~~l~~~~~~~~~~ldgD~iR~ 66 (208)
T d1m7ga_ 22 QRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNIRF 66 (208)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHHTT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCceEEEEcchHHHH
Confidence 578899999999999999999987533 21 22367899888764
|
| >d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Probab=95.21 E-value=0.0041 Score=60.95 Aligned_cols=22 Identities=41% Similarity=0.530 Sum_probs=20.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcc
Q 000984 1073 TVALVGESGSGKSTVVSLLQRF 1094 (1198)
Q Consensus 1073 kvaIVG~SGSGKSTL~~lL~R~ 1094 (1198)
+|+|||++|+|||||++.|++-
T Consensus 7 ~I~lvG~~~~GKSSLin~l~~~ 28 (178)
T d1wf3a1 7 FVAIVGKPNVGKSTLLNNLLGV 28 (178)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 7999999999999999999874
|
| >d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein BH3686 species: Bacillus halodurans [TaxId: 86665]
Probab=95.18 E-value=0.0041 Score=60.18 Aligned_cols=25 Identities=28% Similarity=0.365 Sum_probs=22.4
Q ss_pred CEEEEEcCCCCcHHHHHHHHhccCC
Q 000984 413 TTAALVGQSGSGKSTVISLIERFYD 437 (1198)
Q Consensus 413 ~~~~ivG~~GsGKStl~~~l~g~~~ 437 (1198)
..+.|+||+||||||+++.|.+.+.
T Consensus 3 klI~i~G~~GsGKTTva~~L~~~~~ 27 (176)
T d2bdta1 3 KLYIITGPAGVGKSTTCKRLAAQLD 27 (176)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcC
Confidence 3689999999999999999998763
|
| >d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Thermus thermophilus [TaxId: 274]
Probab=95.18 E-value=0.0029 Score=62.17 Aligned_cols=20 Identities=40% Similarity=0.694 Sum_probs=19.1
Q ss_pred EEEEcCCCCCHHHHHHHHhc
Q 000984 1074 VALVGESGSGKSTVVSLLQR 1093 (1198)
Q Consensus 1074 vaIVG~SGSGKSTL~~lL~R 1093 (1198)
|||||++|+|||||++.|.+
T Consensus 4 VaivG~~nvGKSTLin~L~~ 23 (180)
T d1udxa2 4 VGLVGYPNAGKSSLLAAMTR 23 (180)
T ss_dssp EEEECCGGGCHHHHHHHHCS
T ss_pred EEEECCCCCCHHHHHHHHhC
Confidence 89999999999999999975
|
| >d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase-like domain of Cask species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.18 E-value=0.0047 Score=60.61 Aligned_cols=60 Identities=18% Similarity=0.236 Sum_probs=39.0
Q ss_pred CEEEEEcCCCCCHHHHHHHHhcccC-----C--------CCCeEEECCcccCCCChHHHHhhcceeccccccccccHH
Q 000984 1072 KTVALVGESGSGKSTVVSLLQRFYD-----P--------DAGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIR 1136 (1198)
Q Consensus 1072 ekvaIVG~SGSGKSTL~~lL~R~yd-----p--------~~G~I~IDG~dI~~i~l~~LR~~IsiV~Qdp~LF~gTIr 1136 (1198)
.-+.||||||+||+||++.|++-++ + ..| .+||+|.-=++.+..++.+. ++-++-...+.
T Consensus 4 k~ivl~Gpsg~GK~tl~~~L~~~~~~~~~~~v~~TTR~~R~~--E~~G~dY~Fvs~~~F~~~~~---~g~fie~~~~~ 76 (178)
T d1kgda_ 4 KTLVLLGAHGVGRRHIKNTLITKHPDRFAYPIPHTTRPPKKD--EENGKNYYFVSHDQMMQDIS---NNEYLEYGSHE 76 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCC-----CCBTTTBEECCHHHHHHHHH---TTCEEEEEEET
T ss_pred CcEEEECCCCCCHHHHHHHHHHhCCcCeeeccccccCCCCCc--cccCccceeeehhhhhhhee---cCceEEEeeec
Confidence 4689999999999999998885432 1 123 46788866667777766543 44444444443
|
| >d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cell division protein MukB species: Escherichia coli [TaxId: 562]
Probab=95.16 E-value=0.00055 Score=68.88 Aligned_cols=35 Identities=23% Similarity=0.297 Sum_probs=28.7
Q ss_pred cccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccC
Q 000984 401 IFSGFSISISSGTTAALVGQSGSGKSTVISLIERFY 436 (1198)
Q Consensus 401 ~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~ 436 (1198)
.+++.++++.+| +++|+|+|||||||++.+|.-.+
T Consensus 14 ~~~~~~i~f~~~-~tvi~G~NGsGKStil~Ai~~~L 48 (222)
T d1qhla_ 14 GFFARTFDLDEL-VTTLSGGNGAGKSTTMAAFVTAL 48 (222)
T ss_dssp TEEEEEECHHHH-HHHHHSCCSHHHHHHHHHHHHHH
T ss_pred CEeeEEEEcCCC-eEEEECCCCCCHHHHHHHHHHHh
Confidence 356777777776 99999999999999999997443
|
| >d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=95.14 E-value=0.0043 Score=60.64 Aligned_cols=21 Identities=38% Similarity=0.550 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 000984 1073 TVALVGESGSGKSTVVSLLQR 1093 (1198)
Q Consensus 1073 kvaIVG~SGSGKSTL~~lL~R 1093 (1198)
+|+|+|++|+|||||++.|.|
T Consensus 7 ~I~iiG~~nvGKSSLin~L~~ 27 (179)
T d1egaa1 7 FIAIVGRPNVGKSTLLNKLLG 27 (179)
T ss_dssp EEEEECSSSSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 389999999999999999986
|
| >d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Escherichia coli [TaxId: 562]
Probab=95.11 E-value=0.0029 Score=62.27 Aligned_cols=24 Identities=33% Similarity=0.432 Sum_probs=21.0
Q ss_pred CEEEEEcCCCCCHHHHHHHHhccc
Q 000984 1072 KTVALVGESGSGKSTVVSLLQRFY 1095 (1198)
Q Consensus 1072 ekvaIVG~SGSGKSTL~~lL~R~y 1095 (1198)
=+|+|||++++|||||++.|.+-.
T Consensus 17 ~~I~lvG~~NvGKSSL~n~L~~~~ 40 (188)
T d1puia_ 17 IEVAFAGRSNAGKSSALNTLTNQK 40 (188)
T ss_dssp EEEEEEECTTSSHHHHHTTTCCC-
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 469999999999999999998753
|
| >d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]
Probab=95.10 E-value=0.0051 Score=60.92 Aligned_cols=27 Identities=30% Similarity=0.516 Sum_probs=24.8
Q ss_pred eCCCEEEEEcCCCCCHHHHHHHHhccc
Q 000984 1069 RAGKTVALVGESGSGKSTVVSLLQRFY 1095 (1198)
Q Consensus 1069 ~~GekvaIVG~SGSGKSTL~~lL~R~y 1095 (1198)
|+|=++.|+||.||||||+++.|..-|
T Consensus 1 p~~~riil~G~pGSGKsT~a~~La~~~ 27 (190)
T d1ak2a1 1 PKGVRAVLLGPPGAGKGTQAPKLAKNF 27 (190)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCccEEEEECCCCCCHHHHHHHHHHHh
Confidence 578899999999999999999999766
|
| >d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Chloroplast protein translocon GTPase Toc34 species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=95.09 E-value=0.0042 Score=64.98 Aligned_cols=22 Identities=32% Similarity=0.505 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcc
Q 000984 1073 TVALVGESGSGKSTVVSLLQRF 1094 (1198)
Q Consensus 1073 kvaIVG~SGSGKSTL~~lL~R~ 1094 (1198)
+|+|+|+||+||||++|.|++-
T Consensus 34 ~I~LvG~tg~GKSSliN~ilg~ 55 (257)
T d1h65a_ 34 TILVMGKGGVGKSSTVNSIIGE 55 (257)
T ss_dssp EEEEEESTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 5999999999999999999974
|
| >d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Thermus thermophilus [TaxId: 274]
Probab=95.08 E-value=0.029 Score=57.80 Aligned_cols=23 Identities=26% Similarity=0.352 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhccC
Q 000984 414 TAALVGQSGSGKSTVISLIERFY 436 (1198)
Q Consensus 414 ~~~ivG~~GsGKStl~~~l~g~~ 436 (1198)
-+.+.||+|||||+|+++|.+++
T Consensus 44 giLl~GppGtGKT~la~aia~~~ 66 (247)
T d1ixza_ 44 GVLLVGPPGVGKTHLARAVAGEA 66 (247)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHT
T ss_pred eEEEecCCCCChhHHHHHHHHHc
Confidence 47899999999999999999876
|
| >d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Bacillus subtilis [TaxId: 1423]
Probab=95.03 E-value=0.0044 Score=61.74 Aligned_cols=22 Identities=36% Similarity=0.439 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcc
Q 000984 414 TAALVGQSGSGKSTVISLIERF 435 (1198)
Q Consensus 414 ~~~ivG~~GsGKStl~~~l~g~ 435 (1198)
.|+|+|++|+|||||++.|.|.
T Consensus 25 ~I~lvG~~n~GKSTLin~L~g~ 46 (195)
T d1svia_ 25 EIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHhcCC
Confidence 5999999999999999999985
|
| >d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]
Probab=94.99 E-value=0.0045 Score=59.89 Aligned_cols=23 Identities=26% Similarity=0.304 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhccC
Q 000984 414 TAALVGQSGSGKSTVISLIERFY 436 (1198)
Q Consensus 414 ~~~ivG~~GsGKStl~~~l~g~~ 436 (1198)
++.|+|++||||||+.+.|...+
T Consensus 6 ~I~i~G~pGsGKTTia~~La~~l 28 (173)
T d1rkba_ 6 NILLTGTPGVGKTTLGKELASKS 28 (173)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 57899999999999999998654
|
| >d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Pantothenate kinase PanK species: Escherichia coli [TaxId: 562]
Probab=94.87 E-value=0.0068 Score=64.50 Aligned_cols=47 Identities=15% Similarity=0.349 Sum_probs=34.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcceEEEcCCCCCCcccHH
Q 000984 414 TAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIK 477 (1198)
Q Consensus 414 ~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~ 477 (1198)
+|||.|++||||||+.+.|..++.-..+. .++..+++|.+......+
T Consensus 82 iIGIaG~sgSGKSTla~~L~~lL~~~~~~-----------------~~v~~Is~D~F~~~~~~l 128 (308)
T d1sq5a_ 82 IISIAGSVAVGKSTTARVLQALLSRWPEH-----------------RRVELITTDGFLHPNQVL 128 (308)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHTTSTTC-----------------CCEEEEEGGGGBCCHHHH
T ss_pred EEEEeCCCCCCCcHHHHHHHHHHhhhcCC-----------------CceEEEeeeeeECCchHH
Confidence 78999999999999999998776422111 157788888877654443
|
| >d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=94.87 E-value=0.0053 Score=60.15 Aligned_cols=29 Identities=17% Similarity=0.199 Sum_probs=24.2
Q ss_pred CEEEEEcCCCCcHHHHHHHHhccCCCCCC
Q 000984 413 TTAALVGQSGSGKSTVISLIERFYDPQAG 441 (1198)
Q Consensus 413 ~~~~ivG~~GsGKStl~~~l~g~~~~~~G 441 (1198)
.+++|.|++||||||+++.|...+.....
T Consensus 2 kiI~i~G~~GsGKsT~~~~L~~~l~~~~~ 30 (190)
T d1khta_ 2 KVVVVTGVPGVGSTTSSQLAMDNLRKEGV 30 (190)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHTTTC
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHcCC
Confidence 57999999999999999999876654433
|
| >d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Dictyostelium discoideum [TaxId: 44689]
Probab=94.84 E-value=0.0059 Score=60.67 Aligned_cols=30 Identities=33% Similarity=0.551 Sum_probs=25.2
Q ss_pred CEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEEC
Q 000984 1072 KTVALVGESGSGKSTVVSLLQRFYDPDAGHITLD 1105 (1198)
Q Consensus 1072 ekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~ID 1105 (1198)
..|.|+||+||||||+++.|..-| |-+.|+
T Consensus 7 ~iI~i~G~pGSGKsT~a~~La~~~----g~~~i~ 36 (194)
T d1qf9a_ 7 NVVFVLGGPGSGKGTQCANIVRDF----GWVHLS 36 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHH----CCEEEE
T ss_pred cEEEEECCCCCCHHHHHHHHHHHH----CCceEc
Confidence 578999999999999999998866 445554
|
| >d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase-like domain of Cask species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.82 E-value=0.0064 Score=59.58 Aligned_cols=24 Identities=21% Similarity=0.319 Sum_probs=21.5
Q ss_pred CEEEEEcCCCCcHHHHHHHHhccC
Q 000984 413 TTAALVGQSGSGKSTVISLIERFY 436 (1198)
Q Consensus 413 ~~~~ivG~~GsGKStl~~~l~g~~ 436 (1198)
..+.|+||||+||+||++.|+...
T Consensus 4 k~ivl~Gpsg~GK~tl~~~L~~~~ 27 (178)
T d1kgda_ 4 KTLVLLGAHGVGRRHIKNTLITKH 27 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CcEEEECCCCCCHHHHHHHHHHhC
Confidence 578999999999999999998654
|
| >d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL1 [TaxId: 9606]
Probab=94.82 E-value=0.006 Score=58.58 Aligned_cols=21 Identities=33% Similarity=0.597 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 000984 1073 TVALVGESGSGKSTVVSLLQR 1093 (1198)
Q Consensus 1073 kvaIVG~SGSGKSTL~~lL~R 1093 (1198)
||+|||++|+|||||++.+.+
T Consensus 7 kI~ivG~~~vGKSSLi~~~~~ 27 (169)
T d1upta_ 7 RILILGLDGAGKTTILYRLQV 27 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 699999999999999998864
|
| >d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=94.81 E-value=0.0048 Score=60.41 Aligned_cols=23 Identities=22% Similarity=0.453 Sum_probs=20.7
Q ss_pred CEEEEEcCCCCCHHHHHHHHhcc
Q 000984 1072 KTVALVGESGSGKSTVVSLLQRF 1094 (1198)
Q Consensus 1072 ekvaIVG~SGSGKSTL~~lL~R~ 1094 (1198)
-||+|||++|+|||||++.|.+=
T Consensus 14 ~kI~lvG~~~vGKTsLl~~l~~~ 36 (186)
T d1f6ba_ 14 GKLVFLGLDNAGKTTLLHMLKDD 36 (186)
T ss_dssp EEEEEEEETTSSHHHHHHHHSCC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 48999999999999999999763
|
| >d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Escherichia coli [TaxId: 562]
Probab=94.78 E-value=0.006 Score=58.26 Aligned_cols=23 Identities=35% Similarity=0.443 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhccC
Q 000984 414 TAALVGQSGSGKSTVISLIERFY 436 (1198)
Q Consensus 414 ~~~ivG~~GsGKStl~~~l~g~~ 436 (1198)
.+.|+||+||||||+.+.|...+
T Consensus 4 ~I~l~G~~GsGKSTvak~La~~L 26 (169)
T d1kaga_ 4 NIFLVGPMGAGKSTIGRQLAQQL 26 (169)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999999998765
|
| >d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF1 [TaxId: 9606]
Probab=94.78 E-value=0.0063 Score=57.94 Aligned_cols=21 Identities=29% Similarity=0.506 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 000984 1073 TVALVGESGSGKSTVVSLLQR 1093 (1198)
Q Consensus 1073 kvaIVG~SGSGKSTL~~lL~R 1093 (1198)
||.|||++|+|||||++-|.+
T Consensus 2 kivlvG~~~vGKSsLi~~l~~ 22 (160)
T d1r8sa_ 2 RILMVGLDAAGKTTILYKLKL 22 (160)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 789999999999999998864
|
| >d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: TrmE GTPase domain species: Thermotoga maritima [TaxId: 2336]
Probab=94.71 E-value=0.0023 Score=61.46 Aligned_cols=21 Identities=33% Similarity=0.553 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 000984 1073 TVALVGESGSGKSTVVSLLQR 1093 (1198)
Q Consensus 1073 kvaIVG~SGSGKSTL~~lL~R 1093 (1198)
||||+|++|+|||||++.|.+
T Consensus 2 kI~liG~~n~GKSSLin~l~g 22 (160)
T d1xzpa2 2 RMVIVGKPNVGKSTLLNRLLN 22 (160)
T ss_dssp EEEEECCHHHHTCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 799999999999999999976
|
| >d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.70 E-value=0.0093 Score=61.77 Aligned_cols=44 Identities=16% Similarity=0.394 Sum_probs=31.2
Q ss_pred CCCEEEEeCCCCCCCHHhHHHHHHHHHHHhCCCeEEEEecCcchh
Q 000984 540 DPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTV 584 (1198)
Q Consensus 540 ~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~ 584 (1198)
+.+++++||+-. +.......+.+.+.+...+...|++|++.+.+
T Consensus 131 ~~~iiiide~d~-l~~~~~~~l~~~~e~~~~~~~~Il~tn~~~~i 174 (252)
T d1sxje2 131 RYKCVIINEANS-LTKDAQAALRRTMEKYSKNIRLIMVCDSMSPI 174 (252)
T ss_dssp CCEEEEEECTTS-SCHHHHHHHHHHHHHSTTTEEEEEEESCSCSS
T ss_pred CceEEEeccccc-cccccchhhhcccccccccccceeeeccccch
Confidence 567999999854 66666666666676654555678899888644
|
| >d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Uridylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.68 E-value=0.0063 Score=60.56 Aligned_cols=31 Identities=26% Similarity=0.437 Sum_probs=26.2
Q ss_pred CCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEEC
Q 000984 1071 GKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLD 1105 (1198)
Q Consensus 1071 GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~ID 1105 (1198)
-..+.|+||+||||||++++|..-| |-+.|+
T Consensus 8 ~~iI~i~GppGSGKsT~a~~La~~~----g~~~is 38 (196)
T d1ukza_ 8 VSVIFVLGGPGAGKGTQCEKLVKDY----SFVHLS 38 (196)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHS----SCEEEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh----CCeEEe
Confidence 4469999999999999999999987 555665
|
| >d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.67 E-value=0.006 Score=60.52 Aligned_cols=22 Identities=45% Similarity=0.537 Sum_probs=19.2
Q ss_pred EEEEcCCCCCHHHHHHHHhccc
Q 000984 1074 VALVGESGSGKSTVVSLLQRFY 1095 (1198)
Q Consensus 1074 vaIVG~SGSGKSTL~~lL~R~y 1095 (1198)
|.|+||||||||||++.|+.-+
T Consensus 3 Ivl~GPsGsGK~tl~~~L~~~~ 24 (190)
T d1lvga_ 3 VVLSGPSGAGKSTLLKKLFQEH 24 (190)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHhC
Confidence 6799999999999999986543
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.65 E-value=0.0068 Score=60.82 Aligned_cols=21 Identities=29% Similarity=0.656 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 000984 1073 TVALVGESGSGKSTVVSLLQR 1093 (1198)
Q Consensus 1073 kvaIVG~SGSGKSTL~~lL~R 1093 (1198)
+|+|||++|+|||||++.|.+
T Consensus 5 ~V~lvG~~n~GKTSLln~l~~ 25 (209)
T d1nrjb_ 5 SIIIAGPQNSGKTSLLTLLTT 25 (209)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 799999999999999999975
|
| >d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=94.64 E-value=0.0074 Score=58.53 Aligned_cols=22 Identities=32% Similarity=0.484 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcc
Q 000984 414 TAALVGQSGSGKSTVISLIERF 435 (1198)
Q Consensus 414 ~~~ivG~~GsGKStl~~~l~g~ 435 (1198)
+|+|+|++|+|||||++.|+|.
T Consensus 2 ~V~liG~~n~GKSsLi~~L~~~ 23 (171)
T d1mkya1 2 TVLIVGRPNVGKSTLFNKLVKK 23 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHC-
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999984
|
| >d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Uridine-cytidine kinase 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.63 E-value=0.0065 Score=61.40 Aligned_cols=23 Identities=30% Similarity=0.427 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhccC
Q 000984 414 TAALVGQSGSGKSTVISLIERFY 436 (1198)
Q Consensus 414 ~~~ivG~~GsGKStl~~~l~g~~ 436 (1198)
+|||.|++||||||+.+.|...+
T Consensus 4 iIgI~G~~gSGKSTla~~L~~~l 26 (213)
T d1uj2a_ 4 LIGVSGGTASGKSSVCAKIVQLL 26 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999987765
|
| >d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: di-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.56 E-value=0.014 Score=56.52 Aligned_cols=35 Identities=34% Similarity=0.481 Sum_probs=26.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhc-----ccCCCCC-----eEEECCc
Q 000984 1073 TVALVGESGSGKSTVVSLLQR-----FYDPDAG-----HITLDGV 1107 (1198)
Q Consensus 1073 kvaIVG~SGSGKSTL~~lL~R-----~ydp~~G-----~I~IDG~ 1107 (1198)
||++||.+|+|||||++-+.. -|+|+-| .+.+||.
T Consensus 4 Ki~viG~~~vGKTsLi~r~~~~~f~~~~~~T~~~~~~~~~~~~~~ 48 (171)
T d2erxa1 4 RVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKS 48 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEEEEEEEETTE
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCccCcceeeccccceeeccc
Confidence 789999999999999987654 3556655 3455554
|
| >d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.56 E-value=0.0046 Score=61.27 Aligned_cols=26 Identities=42% Similarity=0.622 Sum_probs=23.4
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhccC
Q 000984 411 SGTTAALVGQSGSGKSTVISLIERFY 436 (1198)
Q Consensus 411 ~g~~~~ivG~~GsGKStl~~~l~g~~ 436 (1198)
+|-++.|+|++||||||+.+.|...+
T Consensus 18 ~g~vI~L~G~pGSGKTTiAk~La~~l 43 (195)
T d1x6va3 18 RGCTVWLTGLSGAGKTTVSMALEEYL 43 (195)
T ss_dssp CCEEEEEESSCHHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 57799999999999999999998765
|
| >d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.54 E-value=0.0077 Score=57.38 Aligned_cols=21 Identities=24% Similarity=0.574 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 000984 1073 TVALVGESGSGKSTVVSLLQR 1093 (1198)
Q Consensus 1073 kvaIVG~SGSGKSTL~~lL~R 1093 (1198)
|++|||++|+|||||++.|.+
T Consensus 2 KI~liG~~nvGKSSLln~l~~ 22 (166)
T d2qtvb1 2 KLLFLGLDNAGKTTLLHMLKN 22 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 799999999999999999886
|
| >d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.48 E-value=0.0074 Score=59.60 Aligned_cols=23 Identities=35% Similarity=0.528 Sum_probs=20.5
Q ss_pred EEEEcCCCCcHHHHHHHHhccCC
Q 000984 415 AALVGQSGSGKSTVISLIERFYD 437 (1198)
Q Consensus 415 ~~ivG~~GsGKStl~~~l~g~~~ 437 (1198)
+.|+|||||||+||++.|+...+
T Consensus 4 Ivl~GpsG~GK~tl~~~L~~~~~ 26 (186)
T d1gkya_ 4 IVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHCT
T ss_pred EEEECCCCCCHHHHHHHHHHhCC
Confidence 78999999999999999987653
|
| >d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein engB species: Pyrococcus horikoshii [TaxId: 53953]
Probab=94.47 E-value=0.0074 Score=59.15 Aligned_cols=22 Identities=36% Similarity=0.415 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcc
Q 000984 414 TAALVGQSGSGKSTVISLIERF 435 (1198)
Q Consensus 414 ~~~ivG~~GsGKStl~~~l~g~ 435 (1198)
.|+|+|++|+|||||++.|.|.
T Consensus 2 ~I~lvG~~nvGKSsLin~l~~~ 23 (184)
T d2cxxa1 2 TIIFAGRSNVGKSTLIYRLTGK 23 (184)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999985
|
| >d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable tRNA modification GTPase TrmE (MnmE), G domain species: Escherichia coli [TaxId: 562]
Probab=94.46 E-value=0.0079 Score=57.54 Aligned_cols=24 Identities=21% Similarity=0.495 Sum_probs=21.5
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhcc
Q 000984 412 GTTAALVGQSGSGKSTVISLIERF 435 (1198)
Q Consensus 412 g~~~~ivG~~GsGKStl~~~l~g~ 435 (1198)
|=+++++|++|+|||||++.|.|.
T Consensus 1 ~~kI~lvG~~nvGKSsLin~l~~~ 24 (161)
T d2gj8a1 1 GMKVVIAGRPNAGKSSLLNALAGR 24 (161)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 347899999999999999999974
|
| >d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Archaeon Acidianus ambivalens [TaxId: 2283]
Probab=94.46 E-value=0.075 Score=52.87 Aligned_cols=96 Identities=20% Similarity=0.354 Sum_probs=49.9
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcceEEEcCCCCCCcccHHHHHhcCCCCCCHHH
Q 000984 412 GTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEE 491 (1198)
Q Consensus 412 g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~Ni~~~~~~~~~~~ 491 (1198)
...+++|||+|+||||.+--|...+. ..| ++++++.=|.+ ....
T Consensus 12 p~vi~lvGptGvGKTTTiAKLA~~~~-~~g------------------~kV~lit~Dt~-----------------R~ga 55 (211)
T d1j8yf2 12 PYVIMLVGVQGTGKATTAGKLAYFYK-KKG------------------FKVGLVGADVY-----------------RPAA 55 (211)
T ss_dssp SEEEEEECSCCC----HHHHHHHHHH-HTT------------------CCEEEEECCCS-----------------SHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHH-HCC------------------CceEEEEeecc-----------------ccch
Confidence 45789999999999998866665543 222 25777755442 2221
Q ss_pred HHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhhccCCCEEEEeCCCCCCCH
Q 000984 492 IRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDA 555 (1198)
Q Consensus 492 ~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal~~~~~illlDe~ts~lD~ 555 (1198)
+++ +..+-+.+ |......+....+..=. +=++..+..++.+++|.| |++..+
T Consensus 56 ~eQ------L~~~a~~l--~v~~~~~~~~~~~~~~~--~~a~~~~~~~~~d~IlID--TaGr~~ 107 (211)
T d1j8yf2 56 LEQ------LQQLGQQI--GVPVYGEPGEKDVVGIA--KRGVEKFLSEKMEIIIVD--TAGRHG 107 (211)
T ss_dssp HHH------HHHHHHHH--TCCEECCTTCCCHHHHH--HHHHHHHHHTTCSEEEEE--CCCSCC
T ss_pred hHH------HHHhcccc--CcceeecccchhhhHHH--HHHHHHhhccCCceEEEe--cCCcCc
Confidence 111 11111111 34444444444332211 225666677899999999 777643
|
| >d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF1 [TaxId: 9606]
Probab=94.43 E-value=0.0083 Score=57.04 Aligned_cols=22 Identities=23% Similarity=0.356 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcc
Q 000984 414 TAALVGQSGSGKSTVISLIERF 435 (1198)
Q Consensus 414 ~~~ivG~~GsGKStl~~~l~g~ 435 (1198)
+++|+|++|||||||++.+.+-
T Consensus 2 kivlvG~~~vGKSsLi~~l~~~ 23 (160)
T d1r8sa_ 2 RILMVGLDAAGKTTILYKLKLG 23 (160)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6889999999999999998753
|
| >d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Bacillus subtilis [TaxId: 1423]
Probab=94.39 E-value=0.0066 Score=59.76 Aligned_cols=22 Identities=36% Similarity=0.542 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcc
Q 000984 414 TAALVGQSGSGKSTVISLIERF 435 (1198)
Q Consensus 414 ~~~ivG~~GsGKStl~~~l~g~ 435 (1198)
-|||+|++++|||||++.|.|.
T Consensus 3 ~VaiiG~~nvGKSSLin~L~~~ 24 (185)
T d1lnza2 3 DVGLVGFPSVGKSTLLSVVSSA 24 (185)
T ss_dssp CEEEESSTTSSHHHHHHHSEEE
T ss_pred eEEEECCCCCCHHHHHHHHhCC
Confidence 4899999999999999999874
|
| >d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor SelB, N-terminal domain species: Methanococcus maripaludis [TaxId: 39152]
Probab=94.36 E-value=0.0087 Score=58.63 Aligned_cols=21 Identities=24% Similarity=0.512 Sum_probs=19.7
Q ss_pred EEEEcCCCCCHHHHHHHHhcc
Q 000984 1074 VALVGESGSGKSTVVSLLQRF 1094 (1198)
Q Consensus 1074 vaIVG~SGSGKSTL~~lL~R~ 1094 (1198)
|||||++.||||||++.|.+.
T Consensus 8 IaiiG~~naGKSTL~n~L~~~ 28 (179)
T d1wb1a4 8 LGIFGHIDHGKTTLSKVLTEI 28 (179)
T ss_dssp EEEEECTTSSHHHHHHHHHTT
T ss_pred EEEEeCCCCcHHHHHHHHHHh
Confidence 899999999999999999863
|
| >d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Campylobacter jejuni [TaxId: 197]
Probab=94.36 E-value=0.0083 Score=57.68 Aligned_cols=23 Identities=35% Similarity=0.521 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhccc
Q 000984 1073 TVALVGESGSGKSTVVSLLQRFY 1095 (1198)
Q Consensus 1073 kvaIVG~SGSGKSTL~~lL~R~y 1095 (1198)
.+.|+|++||||||+.++|..-+
T Consensus 2 ~I~liG~~GsGKsTi~k~La~~l 24 (161)
T d1viaa_ 2 NIVFIGFMGSGKSTLARALAKDL 24 (161)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHHHh
Confidence 48899999999999999997665
|
| >d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-inducible GTPase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.33 E-value=0.0084 Score=66.83 Aligned_cols=23 Identities=43% Similarity=0.673 Sum_probs=20.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhccc
Q 000984 1073 TVALVGESGSGKSTVVSLLQRFY 1095 (1198)
Q Consensus 1073 kvaIVG~SGSGKSTL~~lL~R~y 1095 (1198)
.|||+|+||+|||||+|.|.|..
T Consensus 58 ~Iai~G~~n~GKSSLiNaL~G~~ 80 (400)
T d1tq4a_ 58 NVAVTGETGSGKSSFINTLRGIG 80 (400)
T ss_dssp EEEEEECTTSSHHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999743
|
| >d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]
Probab=94.30 E-value=0.011 Score=58.48 Aligned_cols=27 Identities=30% Similarity=0.567 Sum_probs=24.3
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHhccC
Q 000984 410 SSGTTAALVGQSGSGKSTVISLIERFY 436 (1198)
Q Consensus 410 ~~g~~~~ivG~~GsGKStl~~~l~g~~ 436 (1198)
|+|=.+.|+||.||||||+.+.|...+
T Consensus 1 p~~~riil~G~pGSGKsT~a~~La~~~ 27 (190)
T d1ak2a1 1 PKGVRAVLLGPPGAGKGTQAPKLAKNF 27 (190)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCccEEEEECCCCCCHHHHHHHHHHHh
Confidence 578899999999999999999999755
|
| >d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Probab=94.29 E-value=0.0097 Score=58.12 Aligned_cols=22 Identities=32% Similarity=0.463 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcc
Q 000984 414 TAALVGQSGSGKSTVISLIERF 435 (1198)
Q Consensus 414 ~~~ivG~~GsGKStl~~~l~g~ 435 (1198)
+|+|+|++|+|||||++.|+|.
T Consensus 7 ~I~lvG~~~~GKSSLin~l~~~ 28 (178)
T d1wf3a1 7 FVAIVGKPNVGKSTLLNNLLGV 28 (178)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 7999999999999999999985
|
| >d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL1 [TaxId: 9606]
Probab=94.24 E-value=0.0095 Score=57.06 Aligned_cols=22 Identities=23% Similarity=0.433 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcc
Q 000984 414 TAALVGQSGSGKSTVISLIERF 435 (1198)
Q Consensus 414 ~~~ivG~~GsGKStl~~~l~g~ 435 (1198)
+++|||++|||||||++.+.+-
T Consensus 7 kI~ivG~~~vGKSSLi~~~~~~ 28 (169)
T d1upta_ 7 RILILGLDGAGKTTILYRLQVG 28 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999998763
|
| >d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein RheB species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.23 E-value=0.015 Score=55.90 Aligned_cols=38 Identities=32% Similarity=0.564 Sum_probs=27.3
Q ss_pred CEEEEEcCCCCCHHHHHHHHhc-----ccCCCCCe-----EEECCccc
Q 000984 1072 KTVALVGESGSGKSTVVSLLQR-----FYDPDAGH-----ITLDGVEI 1109 (1198)
Q Consensus 1072 ekvaIVG~SGSGKSTL~~lL~R-----~ydp~~G~-----I~IDG~dI 1109 (1198)
-||+|||.+|+|||||++.+.. -|+|+-|. +.+||.++
T Consensus 5 ~Kv~liG~~~vGKTsLl~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~ 52 (167)
T d1xtqa1 5 RKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEY 52 (167)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSCCCSCCCSSCCEEEEEEEEETTEEE
T ss_pred eEEEEECCCCcCHHHHHHHHHhCCCCcccCcceecccceEEecCcEEE
Confidence 3899999999999999998753 23454443 45677543
|
| >d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cell division protein MukB species: Escherichia coli [TaxId: 562]
Probab=94.11 E-value=0.0011 Score=66.36 Aligned_cols=33 Identities=24% Similarity=0.349 Sum_probs=27.7
Q ss_pred cccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcc
Q 000984 1061 FRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRF 1094 (1198)
Q Consensus 1061 L~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ 1094 (1198)
.++.+|...+| .+.|+|++|||||||+.+|.-.
T Consensus 15 ~~~~~i~f~~~-~tvi~G~NGsGKStil~Ai~~~ 47 (222)
T d1qhla_ 15 FFARTFDLDEL-VTTLSGGNGAGKSTTMAAFVTA 47 (222)
T ss_dssp EEEEEECHHHH-HHHHHSCCSHHHHHHHHHHHHH
T ss_pred EeeEEEEcCCC-eEEEECCCCCCHHHHHHHHHHH
Confidence 56677777776 8899999999999999999744
|
| >d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Erwinia chrysanthemi [TaxId: 556]
Probab=94.10 E-value=0.0096 Score=57.71 Aligned_cols=24 Identities=33% Similarity=0.472 Sum_probs=20.8
Q ss_pred CEEEEEcCCCCCHHHHHHHHhccc
Q 000984 1072 KTVALVGESGSGKSTVVSLLQRFY 1095 (1198)
Q Consensus 1072 ekvaIVG~SGSGKSTL~~lL~R~y 1095 (1198)
+.+-|+|++||||||+.++|..-+
T Consensus 3 ~~Iil~G~~GsGKSTia~~LA~~L 26 (170)
T d1e6ca_ 3 EPIFMVGARGCGMTTVGRELARAL 26 (170)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHH
T ss_pred CCEEEECCCCCCHHHHHHHHHHHh
Confidence 457899999999999999997654
|
| >d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: ATP(GTP)-binding protein PAB0955 species: Pyrococcus abyssi [TaxId: 29292]
Probab=94.05 E-value=0.014 Score=59.92 Aligned_cols=24 Identities=38% Similarity=0.714 Sum_probs=21.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhcccC
Q 000984 1073 TVALVGESGSGKSTVVSLLQRFYD 1096 (1198)
Q Consensus 1073 kvaIVG~SGSGKSTL~~lL~R~yd 1096 (1198)
.|+|+|+.|||||||++.|.+...
T Consensus 2 vi~v~G~~GsGKTTLl~~ll~~~~ 25 (244)
T d1yrba1 2 IVVFVGTAGSGKTTLTGEFGRYLE 25 (244)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEEEcCCCCcHHHHHHHHHHHHh
Confidence 589999999999999999987653
|
| >d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Thermus thermophilus [TaxId: 274]
Probab=94.04 E-value=0.011 Score=58.52 Aligned_cols=22 Identities=45% Similarity=0.792 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcc
Q 000984 1073 TVALVGESGSGKSTVVSLLQRF 1094 (1198)
Q Consensus 1073 kvaIVG~SGSGKSTL~~lL~R~ 1094 (1198)
.|||+|.+||||||+++.|..+
T Consensus 5 IIgitG~~gSGKstva~~l~~~ 26 (191)
T d1uf9a_ 5 IIGITGNIGSGKSTVAALLRSW 26 (191)
T ss_dssp EEEEEECTTSCHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHC
Confidence 5899999999999999998653
|
| >d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=94.02 E-value=0.012 Score=57.38 Aligned_cols=22 Identities=32% Similarity=0.422 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcc
Q 000984 414 TAALVGQSGSGKSTVISLIERF 435 (1198)
Q Consensus 414 ~~~ivG~~GsGKStl~~~l~g~ 435 (1198)
+|+|+|.+|+|||||++.|.|.
T Consensus 7 ~I~iiG~~nvGKSSLin~L~~~ 28 (179)
T d1egaa1 7 FIAIVGRPNVGKSTLLNKLLGQ 28 (179)
T ss_dssp EEEEECSSSSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4899999999999999999973
|
| >d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.00 E-value=0.014 Score=58.50 Aligned_cols=28 Identities=18% Similarity=0.389 Sum_probs=24.8
Q ss_pred EeCCCEEEEEcCCCCcHHHHHHHHhccC
Q 000984 409 ISSGTTAALVGQSGSGKSTVISLIERFY 436 (1198)
Q Consensus 409 i~~g~~~~ivG~~GsGKStl~~~l~g~~ 436 (1198)
+++|+.+.|.||+|||||||+.-++...
T Consensus 20 i~~G~v~~i~G~~GsGKT~l~l~la~~~ 47 (242)
T d1n0wa_ 20 IETGSITEMFGEFRTGKTQICHTLAVTC 47 (242)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CcCCEEEEEEeCCCCCHHHHHHHHHHHH
Confidence 7899999999999999999998777543
|
| >d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=93.97 E-value=0.0095 Score=58.11 Aligned_cols=24 Identities=17% Similarity=0.378 Sum_probs=21.0
Q ss_pred CEEEEEcCCCCcHHHHHHHHhccC
Q 000984 413 TTAALVGQSGSGKSTVISLIERFY 436 (1198)
Q Consensus 413 ~~~~ivG~~GsGKStl~~~l~g~~ 436 (1198)
-+++|||++|||||||++.|.+-.
T Consensus 14 ~kI~lvG~~~vGKTsLl~~l~~~~ 37 (186)
T d1f6ba_ 14 GKLVFLGLDNAGKTTLLHMLKDDR 37 (186)
T ss_dssp EEEEEEEETTSSHHHHHHHHSCC-
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 479999999999999999998753
|
| >d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Dictyostelium discoideum [TaxId: 44689]
Probab=93.96 E-value=0.011 Score=58.44 Aligned_cols=25 Identities=32% Similarity=0.410 Sum_probs=22.3
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhccC
Q 000984 412 GTTAALVGQSGSGKSTVISLIERFY 436 (1198)
Q Consensus 412 g~~~~ivG~~GsGKStl~~~l~g~~ 436 (1198)
..++.|+||+||||||+.+.|...|
T Consensus 6 p~iI~i~G~pGSGKsT~a~~La~~~ 30 (194)
T d1qf9a_ 6 PNVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 3578999999999999999998766
|
| >d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.94 E-value=0.012 Score=55.96 Aligned_cols=22 Identities=18% Similarity=0.445 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcc
Q 000984 414 TAALVGQSGSGKSTVISLIERF 435 (1198)
Q Consensus 414 ~~~ivG~~GsGKStl~~~l~g~ 435 (1198)
+++++|++|+|||||++.|.+-
T Consensus 2 KI~liG~~nvGKSSLln~l~~~ 23 (166)
T d2qtvb1 2 KLLFLGLDNAGKTTLLHMLKND 23 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 7899999999999999999974
|
| >d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Chloroplast protein translocon GTPase Toc34 species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=93.88 E-value=0.012 Score=61.35 Aligned_cols=23 Identities=30% Similarity=0.407 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhccC
Q 000984 414 TAALVGQSGSGKSTVISLIERFY 436 (1198)
Q Consensus 414 ~~~ivG~~GsGKStl~~~l~g~~ 436 (1198)
.++|+|++|+|||||++.|+|.-
T Consensus 34 ~I~LvG~tg~GKSSliN~ilg~~ 56 (257)
T d1h65a_ 34 TILVMGKGGVGKSSTVNSIIGER 56 (257)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 48999999999999999999853
|
| >d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Thermus thermophilus [TaxId: 274]
Probab=93.83 E-value=0.0091 Score=58.42 Aligned_cols=21 Identities=33% Similarity=0.597 Sum_probs=19.8
Q ss_pred EEEEcCCCCcHHHHHHHHhcc
Q 000984 415 AALVGQSGSGKSTVISLIERF 435 (1198)
Q Consensus 415 ~~ivG~~GsGKStl~~~l~g~ 435 (1198)
|||+|++|+|||||++.|.|.
T Consensus 4 VaivG~~nvGKSTLin~L~~~ 24 (180)
T d1udxa2 4 VGLVGYPNAGKSSLLAAMTRA 24 (180)
T ss_dssp EEEECCGGGCHHHHHHHHCSS
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 899999999999999999874
|
| >d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.78 E-value=0.013 Score=57.98 Aligned_cols=22 Identities=36% Similarity=0.469 Sum_probs=19.7
Q ss_pred EEEEcCCCCcHHHHHHHHhccC
Q 000984 415 AALVGQSGSGKSTVISLIERFY 436 (1198)
Q Consensus 415 ~~ivG~~GsGKStl~~~l~g~~ 436 (1198)
++|+|||||||+||++.|+...
T Consensus 3 Ivl~GPsGsGK~tl~~~L~~~~ 24 (190)
T d1lvga_ 3 VVLSGPSGAGKSTLLKKLFQEH 24 (190)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHhC
Confidence 7899999999999999987654
|
| >d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: ATP(GTP)-binding protein PAB0955 species: Pyrococcus abyssi [TaxId: 29292]
Probab=93.77 E-value=0.014 Score=59.85 Aligned_cols=23 Identities=35% Similarity=0.640 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhccC
Q 000984 414 TAALVGQSGSGKSTVISLIERFY 436 (1198)
Q Consensus 414 ~~~ivG~~GsGKStl~~~l~g~~ 436 (1198)
.++|+|+.|||||||++.|++..
T Consensus 2 vi~v~G~~GsGKTTLl~~ll~~~ 24 (244)
T d1yrba1 2 IVVFVGTAGSGKTTLTGEFGRYL 24 (244)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEEcCCCCcHHHHHHHHHHHH
Confidence 58999999999999999998754
|
| >d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.76 E-value=0.017 Score=57.98 Aligned_cols=27 Identities=26% Similarity=0.439 Sum_probs=23.9
Q ss_pred EeeCCCEEEEEcCCCCCHHHHHHHHhc
Q 000984 1067 KIRAGKTVALVGESGSGKSTVVSLLQR 1093 (1198)
Q Consensus 1067 ~I~~GekvaIVG~SGSGKSTL~~lL~R 1093 (1198)
=|++|+.+-|.|++||||||++.-++.
T Consensus 19 Gi~~G~v~~i~G~~GsGKT~l~l~la~ 45 (242)
T d1n0wa_ 19 GIETGSITEMFGEFRTGKTQICHTLAV 45 (242)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcCCEEEEEEeCCCCCHHHHHHHHHH
Confidence 389999999999999999999876653
|
| >d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=93.74 E-value=0.014 Score=56.95 Aligned_cols=23 Identities=30% Similarity=0.515 Sum_probs=20.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhccc
Q 000984 1073 TVALVGESGSGKSTVVSLLQRFY 1095 (1198)
Q Consensus 1073 kvaIVG~SGSGKSTL~~lL~R~y 1095 (1198)
+|.|+|+.||||||++++|.--|
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~~ 24 (182)
T d1zina1 2 NLVLMGLPGAGKGTQAEKIVAAY 24 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 57899999999999999997766
|
| >d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus globisporus [TaxId: 1459]
Probab=93.72 E-value=0.014 Score=57.10 Aligned_cols=23 Identities=30% Similarity=0.537 Sum_probs=21.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhccc
Q 000984 1073 TVALVGESGSGKSTVVSLLQRFY 1095 (1198)
Q Consensus 1073 kvaIVG~SGSGKSTL~~lL~R~y 1095 (1198)
+|.|+|+.||||||+++.|..-|
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~~ 24 (182)
T d1s3ga1 2 NIVLMGLPGAGKGTQADRIVEKY 24 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58899999999999999998877
|
| >d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor SelB, N-terminal domain species: Methanococcus maripaludis [TaxId: 39152]
Probab=93.71 E-value=0.015 Score=56.89 Aligned_cols=21 Identities=19% Similarity=0.444 Sum_probs=19.7
Q ss_pred EEEEcCCCCcHHHHHHHHhcc
Q 000984 415 AALVGQSGSGKSTVISLIERF 435 (1198)
Q Consensus 415 ~~ivG~~GsGKStl~~~l~g~ 435 (1198)
|||+|++.+|||||++.|.|.
T Consensus 8 IaiiG~~naGKSTL~n~L~~~ 28 (179)
T d1wb1a4 8 LGIFGHIDHGKTTLSKVLTEI 28 (179)
T ss_dssp EEEEECTTSSHHHHHHHHHTT
T ss_pred EEEEeCCCCcHHHHHHHHHHh
Confidence 899999999999999999874
|
| >d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Escherichia coli [TaxId: 562]
Probab=93.70 E-value=0.0087 Score=58.57 Aligned_cols=24 Identities=25% Similarity=0.418 Sum_probs=21.1
Q ss_pred CEEEEEcCCCCcHHHHHHHHhccC
Q 000984 413 TTAALVGQSGSGKSTVISLIERFY 436 (1198)
Q Consensus 413 ~~~~ivG~~GsGKStl~~~l~g~~ 436 (1198)
=+|+|+|++++|||||++.|.|.-
T Consensus 17 ~~I~lvG~~NvGKSSL~n~L~~~~ 40 (188)
T d1puia_ 17 IEVAFAGRSNAGKSSALNTLTNQK 40 (188)
T ss_dssp EEEEEEECTTSSHHHHHTTTCCC-
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 369999999999999999998853
|
| >d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=93.70 E-value=0.011 Score=58.79 Aligned_cols=34 Identities=32% Similarity=0.527 Sum_probs=28.3
Q ss_pred eeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEEC
Q 000984 1068 IRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLD 1105 (1198)
Q Consensus 1068 I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~ID 1105 (1198)
++.+..|-|+||.||||||+++.|..-| |-..|+
T Consensus 5 ~~~~~iI~l~G~pGSGKsT~a~~La~~~----g~~~is 38 (194)
T d3adka_ 5 LKKSKIIFVVGGPGSGKGTQCEKIVQKY----GYTHLS 38 (194)
T ss_dssp HHTSCEEEEEECTTSSHHHHHHHHHHHT----CCEEEE
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHh----CCeeEe
Confidence 4567889999999999999999998866 455555
|
| >d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL2 [TaxId: 10090]
Probab=93.69 E-value=0.015 Score=55.83 Aligned_cols=22 Identities=18% Similarity=0.385 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhcc
Q 000984 1073 TVALVGESGSGKSTVVSLLQRF 1094 (1198)
Q Consensus 1073 kvaIVG~SGSGKSTL~~lL~R~ 1094 (1198)
||+|||++|+|||||++.|.+-
T Consensus 4 ki~ivG~~~~GKTsLi~~l~~~ 25 (165)
T d1ksha_ 4 RLLMLGLDNAGKTTILKKFNGE 25 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHcCC
Confidence 6899999999999999998763
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.67 E-value=0.014 Score=58.41 Aligned_cols=22 Identities=23% Similarity=0.499 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcc
Q 000984 414 TAALVGQSGSGKSTVISLIERF 435 (1198)
Q Consensus 414 ~~~ivG~~GsGKStl~~~l~g~ 435 (1198)
.|+|+|++|||||||++.|.+.
T Consensus 5 ~V~lvG~~n~GKTSLln~l~~~ 26 (209)
T d1nrjb_ 5 SIIIAGPQNSGKTSLLTLLTTD 26 (209)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 7899999999999999999874
|
| >d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.65 E-value=0.015 Score=57.51 Aligned_cols=69 Identities=23% Similarity=0.282 Sum_probs=41.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHhhcceeccccccccccHHHHHhcCCCCCCCHHHH
Q 000984 1073 TVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEI 1152 (1198)
Q Consensus 1073 kvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~~i~l~~LR~~IsiV~Qdp~LF~gTIreNI~~g~~~~~tdeei 1152 (1198)
+|.|+||.||||||+++.|..-| |-..|+--| -+|..+ -++...+.-.+.+.+.=|. ...|+.+
T Consensus 3 iI~i~GppGSGKsT~a~~La~~~----g~~~i~~g~-------llR~~~---~~~~~~~~~~~~~~~~~~~--~v~d~~~ 66 (194)
T d1teva_ 3 VVFVLGGPGAGKGTQCARIVEKY----GYTHLSAGE-------LLRDER---KNPDSQYGELIEKYIKEGK--IVPVEIT 66 (194)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH----CCEEEEHHH-------HHHHHH---HCTTSTTHHHHHHHHHTTC--CCCHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh----CCceEcHHH-------HHHHHH---HhhhhhHHHHHHHHHhcCC--ccccchh
Confidence 58999999999999999998766 444554222 234322 1233334445555554442 4566665
Q ss_pred HHHHH
Q 000984 1153 QAASE 1157 (1198)
Q Consensus 1153 ~~Al~ 1157 (1198)
...++
T Consensus 67 ~~~~~ 71 (194)
T d1teva_ 67 ISLLK 71 (194)
T ss_dssp HHHHH
T ss_pred hHHHH
Confidence 55443
|
| >d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: di-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.64 E-value=0.03 Score=53.92 Aligned_cols=21 Identities=29% Similarity=0.517 Sum_probs=19.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 000984 414 TAALVGQSGSGKSTVISLIER 434 (1198)
Q Consensus 414 ~~~ivG~~GsGKStl~~~l~g 434 (1198)
+++++|.+|+|||||++.+.+
T Consensus 4 Ki~viG~~~vGKTsLi~r~~~ 24 (171)
T d2erxa1 4 RVAVFGAGGVGKSSLVLRFVK 24 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 689999999999999988775
|
| >d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyribonucleoside kinase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=93.55 E-value=0.015 Score=57.61 Aligned_cols=24 Identities=33% Similarity=0.628 Sum_probs=21.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhcccC
Q 000984 1073 TVALVGESGSGKSTVVSLLQRFYD 1096 (1198)
Q Consensus 1073 kvaIVG~SGSGKSTL~~lL~R~yd 1096 (1198)
.|+|-|..||||||++++|.+-..
T Consensus 11 ~I~ieG~~GsGKTTl~~~L~~~l~ 34 (197)
T d2vp4a1 11 TVLIEGNIGSGKTTYLNHFEKYKN 34 (197)
T ss_dssp EEEEECSTTSCHHHHHHTTGGGTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 699999999999999999998763
|
| >d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermus aquaticus [TaxId: 271]
Probab=93.51 E-value=0.024 Score=56.41 Aligned_cols=49 Identities=24% Similarity=0.383 Sum_probs=33.6
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCC-hHHHH
Q 000984 1070 AGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQ-LKWLR 1118 (1198)
Q Consensus 1070 ~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~~i~-l~~LR 1118 (1198)
.+..+++|||||+||||.+.=|.+.+.-..-+|.+=..|.-... .+.|+
T Consensus 5 ~~~vi~lvGptGvGKTTTiaKLA~~~~~~g~kV~lit~Dt~R~gA~eQL~ 54 (207)
T d1okkd2 5 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLS 54 (207)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEeccccccchhhHh
Confidence 46789999999999998876667766644456666566654433 34444
|
| >d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Probab=93.50 E-value=0.013 Score=57.42 Aligned_cols=24 Identities=33% Similarity=0.488 Sum_probs=21.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhcccC
Q 000984 1073 TVALVGESGSGKSTVVSLLQRFYD 1096 (1198)
Q Consensus 1073 kvaIVG~SGSGKSTL~~lL~R~yd 1096 (1198)
.+.|.|++||||||+++.|...+.
T Consensus 3 iivi~G~~GsGKTT~~~~La~~L~ 26 (194)
T d1nksa_ 3 IGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 456789999999999999988775
|
| >d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=93.50 E-value=0.013 Score=56.41 Aligned_cols=24 Identities=42% Similarity=0.513 Sum_probs=20.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcccC
Q 000984 1073 TVALVGESGSGKSTVVSLLQRFYD 1096 (1198)
Q Consensus 1073 kvaIVG~SGSGKSTL~~lL~R~yd 1096 (1198)
++.|+|++||||||+.++|..-+.
T Consensus 3 ~IvliG~~G~GKSTig~~La~~l~ 26 (165)
T d2iyva1 3 KAVLVGLPGSGKSTIGRRLAKALG 26 (165)
T ss_dssp SEEEECSTTSSHHHHHHHHHHHHT
T ss_pred cEEEECCCCCCHHHHHHHHHHHhC
Confidence 377899999999999999987663
|
| >d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxycytidine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.45 E-value=0.014 Score=59.93 Aligned_cols=27 Identities=30% Similarity=0.538 Sum_probs=24.3
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHhcccC
Q 000984 1070 AGKTVALVGESGSGKSTVVSLLQRFYD 1096 (1198)
Q Consensus 1070 ~GekvaIVG~SGSGKSTL~~lL~R~yd 1096 (1198)
++..|+|-|+.||||||++++|...++
T Consensus 1 ~~k~I~ieG~dGsGKST~~~~L~~~l~ 27 (241)
T d1p5zb_ 1 RIKKISIEGNIAAGKSTFVNILKQLCE 27 (241)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHh
Confidence 367899999999999999999998774
|
| >d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: TrmE GTPase domain species: Thermotoga maritima [TaxId: 2336]
Probab=93.45 E-value=0.0065 Score=58.08 Aligned_cols=22 Identities=27% Similarity=0.418 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcc
Q 000984 414 TAALVGQSGSGKSTVISLIERF 435 (1198)
Q Consensus 414 ~~~ivG~~GsGKStl~~~l~g~ 435 (1198)
+++++|++|+|||||++.|.|.
T Consensus 2 kI~liG~~n~GKSSLin~l~g~ 23 (160)
T d1xzpa2 2 RMVIVGKPNVGKSTLLNRLLNE 23 (160)
T ss_dssp EEEEECCHHHHTCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999985
|
| >d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Maize (Zea mays) [TaxId: 4577]
Probab=93.41 E-value=0.012 Score=58.07 Aligned_cols=23 Identities=35% Similarity=0.556 Sum_probs=21.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhccc
Q 000984 1073 TVALVGESGSGKSTVVSLLQRFY 1095 (1198)
Q Consensus 1073 kvaIVG~SGSGKSTL~~lL~R~y 1095 (1198)
++.|.||+||||||+++.|..-|
T Consensus 5 ~I~i~GppGsGKsT~a~~La~~~ 27 (189)
T d1zaka1 5 KVMISGAPASGKGTQCELIKTKY 27 (189)
T ss_dssp CEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 47899999999999999998777
|
| >d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=93.39 E-value=0.014 Score=57.89 Aligned_cols=34 Identities=29% Similarity=0.407 Sum_probs=27.9
Q ss_pred EeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEEC
Q 000984 409 ISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLID 446 (1198)
Q Consensus 409 i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~ 446 (1198)
++.+.++.|+||+||||||+.+.|...+ |-..++
T Consensus 5 ~~~~~iI~l~G~pGSGKsT~a~~La~~~----g~~~is 38 (194)
T d3adka_ 5 LKKSKIIFVVGGPGSGKGTQCEKIVQKY----GYTHLS 38 (194)
T ss_dssp HHTSCEEEEEECTTSSHHHHHHHHHHHT----CCEEEE
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHh----CCeeEe
Confidence 3567889999999999999999998866 545554
|
| >d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Uridylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.37 E-value=0.012 Score=58.49 Aligned_cols=31 Identities=23% Similarity=0.311 Sum_probs=25.9
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEEC
Q 000984 412 GTTAALVGQSGSGKSTVISLIERFYDPQAGEVLID 446 (1198)
Q Consensus 412 g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~ 446 (1198)
-..+.|+||+||||||+.+.|..-| |-+.|+
T Consensus 8 ~~iI~i~GppGSGKsT~a~~La~~~----g~~~is 38 (196)
T d1ukza_ 8 VSVIFVLGGPGAGKGTQCEKLVKDY----SFVHLS 38 (196)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHS----SCEEEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh----CCeEEe
Confidence 4469999999999999999999877 555554
|
| >d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Erwinia chrysanthemi [TaxId: 556]
Probab=93.34 E-value=0.017 Score=55.87 Aligned_cols=24 Identities=29% Similarity=0.367 Sum_probs=20.7
Q ss_pred CEEEEEcCCCCcHHHHHHHHhccC
Q 000984 413 TTAALVGQSGSGKSTVISLIERFY 436 (1198)
Q Consensus 413 ~~~~ivG~~GsGKStl~~~l~g~~ 436 (1198)
+.+.++|++||||||+.+.|...+
T Consensus 3 ~~Iil~G~~GsGKSTia~~LA~~L 26 (170)
T d1e6ca_ 3 EPIFMVGARGCGMTTVGRELARAL 26 (170)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHH
T ss_pred CCEEEECCCCCCHHHHHHHHHHHh
Confidence 457799999999999999998655
|
| >d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Campylobacter jejuni [TaxId: 197]
Probab=93.32 E-value=0.018 Score=55.24 Aligned_cols=22 Identities=32% Similarity=0.469 Sum_probs=20.1
Q ss_pred EEEEcCCCCcHHHHHHHHhccC
Q 000984 415 AALVGQSGSGKSTVISLIERFY 436 (1198)
Q Consensus 415 ~~ivG~~GsGKStl~~~l~g~~ 436 (1198)
+.|+|++||||||+.+.|...+
T Consensus 3 I~liG~~GsGKsTi~k~La~~l 24 (161)
T d1viaa_ 3 IVFIGFMGSGKSTLARALAKDL 24 (161)
T ss_dssp EEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 7889999999999999998765
|
| >d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermotoga maritima [TaxId: 2336]
Probab=93.32 E-value=0.078 Score=52.82 Aligned_cols=103 Identities=17% Similarity=0.307 Sum_probs=55.9
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcceEEEcCCCCCCcccHHHHHhcCCCCCCHH
Q 000984 411 SGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTE 490 (1198)
Q Consensus 411 ~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~Ni~~~~~~~~~~ 490 (1198)
+-..+++|||+|+||||.+--|.-.+. ..| ++++++.=|. +...
T Consensus 10 ~p~vi~lvGptGvGKTTTiAKLAa~~~-~~~------------------~kV~lit~Dt-----------------~R~g 53 (213)
T d1vmaa2 10 PPFVIMVVGVNGTGKTTSCGKLAKMFV-DEG------------------KSVVLAAADT-----------------FRAA 53 (213)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHH-HTT------------------CCEEEEEECT-----------------TCHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHH-HCC------------------CceEEEeecc-----------------cccc
Confidence 445789999999999998766664432 222 2577665544 1221
Q ss_pred HHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhhccCCCEEEEeCCCCCCCHHhHHHH
Q 000984 491 EIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVV 561 (1198)
Q Consensus 491 ~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal~~~~~illlDe~ts~lD~~~~~~i 561 (1198)
.+++ |..+-+.+ |........+..+. .-.+-+.+.+..++.|++|.| |++..+.....+
T Consensus 54 A~eQ------L~~~a~~l--~i~~~~~~~~~d~~--~~~~~~~~~~~~~~~d~ilID--TaGr~~~d~~~~ 112 (213)
T d1vmaa2 54 AIEQ------LKIWGERV--GATVISHSEGADPA--AVAFDAVAHALARNKDVVIID--TAGRLHTKKNLM 112 (213)
T ss_dssp HHHH------HHHHHHHH--TCEEECCSTTCCHH--HHHHHHHHHHHHTTCSEEEEE--ECCCCSCHHHHH
T ss_pred hhHH------HHHHhhhc--CccccccCCCCcHH--HHHHHHHHHHHHcCCCEEEEe--ccccccchHHHH
Confidence 1111 11222222 33444444333332 233344455667889999999 666655544444
|
| >d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: LAO/AO transport system kinase ArgK species: Escherichia coli [TaxId: 562]
Probab=93.32 E-value=0.013 Score=62.93 Aligned_cols=28 Identities=21% Similarity=0.359 Sum_probs=24.1
Q ss_pred CCEEEEEcCCCCCHHHHHHHHhcccCCC
Q 000984 1071 GKTVALVGESGSGKSTVVSLLQRFYDPD 1098 (1198)
Q Consensus 1071 GekvaIVG~SGSGKSTL~~lL~R~ydp~ 1098 (1198)
.-+|||+|+.|||||||++.|.+.+...
T Consensus 54 ~~~IgitG~pGaGKSTLi~~l~~~~~~~ 81 (327)
T d2p67a1 54 TLRLGVTGTPGAGKSTFLEAFGMLLIRE 81 (327)
T ss_dssp SEEEEEEECTTSCHHHHHHHHHHHHHHT
T ss_pred ceEEEeeCCCCCCHHHHHHHHHHHHHhc
Confidence 4579999999999999999998877543
|
| >d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Haemophilus influenzae [TaxId: 727]
Probab=93.27 E-value=0.018 Score=57.57 Aligned_cols=20 Identities=45% Similarity=0.733 Sum_probs=18.3
Q ss_pred EEEEEcCCCCCHHHHHHHHh
Q 000984 1073 TVALVGESGSGKSTVVSLLQ 1092 (1198)
Q Consensus 1073 kvaIVG~SGSGKSTL~~lL~ 1092 (1198)
.|||.|.+||||||+++.|-
T Consensus 4 iIgITG~igSGKStv~~~l~ 23 (205)
T d1jjva_ 4 IVGLTGGIGSGKTTIANLFT 23 (205)
T ss_dssp EEEEECSTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 58999999999999999874
|
| >d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL2 [TaxId: 10090]
Probab=93.25 E-value=0.024 Score=54.20 Aligned_cols=23 Identities=17% Similarity=0.304 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhccC
Q 000984 414 TAALVGQSGSGKSTVISLIERFY 436 (1198)
Q Consensus 414 ~~~ivG~~GsGKStl~~~l~g~~ 436 (1198)
+++|+|+.|||||||++.|.+..
T Consensus 4 ki~ivG~~~~GKTsLi~~l~~~~ 26 (165)
T d1ksha_ 4 RLLMLGLDNAGKTTILKKFNGED 26 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHTTCC
T ss_pred EEEEECCCCCCHHHHHHHHcCCC
Confidence 58999999999999999998753
|
| >d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.23 E-value=0.023 Score=55.10 Aligned_cols=40 Identities=25% Similarity=0.273 Sum_probs=30.2
Q ss_pred eCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCC
Q 000984 1069 RAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKL 1112 (1198)
Q Consensus 1069 ~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~~i 1112 (1198)
++-+.|-+||++||||||+++-|+.- .|.+.|+.-++...
T Consensus 12 ~~p~liil~G~pGsGKST~a~~l~~~----~~~~~i~~D~~~~~ 51 (172)
T d1yj5a2 12 PNPEVVVAVGFPGAGKSTFIQEHLVS----AGYVHVNRDTLGSW 51 (172)
T ss_dssp SSCCEEEEECCTTSSHHHHHHHHTGG----GTCEEEEHHHHCSH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHh----cCCEEEchHHHHHH
Confidence 45578999999999999999887643 45677766555543
|
| >d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Escherichia coli [TaxId: 562]
Probab=93.19 E-value=0.018 Score=56.05 Aligned_cols=24 Identities=25% Similarity=0.459 Sum_probs=21.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcccC
Q 000984 1073 TVALVGESGSGKSTVVSLLQRFYD 1096 (1198)
Q Consensus 1073 kvaIVG~SGSGKSTL~~lL~R~yd 1096 (1198)
++.|+|+.||||||+++.|..-|.
T Consensus 2 ~I~i~G~pGSGKsT~~~~La~~~~ 25 (179)
T d1e4va1 2 RIILLGAPVAGKGTQAQFIMEKYG 25 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 688999999999999999987664
|
| >d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein RalA species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]
Probab=93.15 E-value=0.032 Score=53.68 Aligned_cols=37 Identities=35% Similarity=0.641 Sum_probs=27.3
Q ss_pred EEEEEcCCCCCHHHHHHHHh-----cccCCCCCe-----EEECCccc
Q 000984 1073 TVALVGESGSGKSTVVSLLQ-----RFYDPDAGH-----ITLDGVEI 1109 (1198)
Q Consensus 1073 kvaIVG~SGSGKSTL~~lL~-----R~ydp~~G~-----I~IDG~dI 1109 (1198)
||.+||.+|+|||||++.+. .-|+|+.|. +.+||.++
T Consensus 6 KivlvG~~~vGKTsli~~~~~~~f~~~~~~T~~~~~~~~~~~~~~~~ 52 (168)
T d1u8za_ 6 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEV 52 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEE
T ss_pred EEEEECCCCcCHHHHHHHHHhCCCCcccCCccccccccccccccccc
Confidence 79999999999999999875 345666553 44666543
|
| >d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-like estrogen-regulated growth inhibitor, RERG species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.13 E-value=0.033 Score=53.56 Aligned_cols=28 Identities=36% Similarity=0.595 Sum_probs=22.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhc-----ccCCCCC
Q 000984 1073 TVALVGESGSGKSTVVSLLQR-----FYDPDAG 1100 (1198)
Q Consensus 1073 kvaIVG~SGSGKSTL~~lL~R-----~ydp~~G 1100 (1198)
||.+||.+|+|||||++-+.. -|+|+-|
T Consensus 4 Ki~lvG~~~vGKTsli~r~~~~~f~~~~~pTi~ 36 (168)
T d2atva1 4 KLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLE 36 (168)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCC
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCccCCcee
Confidence 689999999999999987763 4556545
|
| >d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.10 E-value=0.02 Score=57.17 Aligned_cols=22 Identities=32% Similarity=0.425 Sum_probs=20.0
Q ss_pred CEEEEEcCCCCCHHHHHHHHhc
Q 000984 1072 KTVALVGESGSGKSTVVSLLQR 1093 (1198)
Q Consensus 1072 ekvaIVG~SGSGKSTL~~lL~R 1093 (1198)
.+|+|||+.|+|||||++.|.+
T Consensus 1 k~V~ivG~~~~GKTsLl~~l~~ 22 (207)
T d2fh5b1 1 RAVLFVGLCDSGKTLLFVRLLT 22 (207)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHc
Confidence 4799999999999999999875
|
| >d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=93.08 E-value=0.02 Score=57.85 Aligned_cols=24 Identities=33% Similarity=0.585 Sum_probs=21.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhcccC
Q 000984 1073 TVALVGESGSGKSTVVSLLQRFYD 1096 (1198)
Q Consensus 1073 kvaIVG~SGSGKSTL~~lL~R~yd 1096 (1198)
+|||-||+||||||++++|..=|.
T Consensus 5 ~IaIdGp~GsGKgT~ak~La~~lg 28 (223)
T d1q3ta_ 5 QIAIDGPASSGKSTVAKIIAKDFG 28 (223)
T ss_dssp EEEEECSSCSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 588999999999999999987554
|
| >d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=93.05 E-value=0.02 Score=57.18 Aligned_cols=24 Identities=21% Similarity=0.464 Sum_probs=21.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhccCC
Q 000984 414 TAALVGQSGSGKSTVISLIERFYD 437 (1198)
Q Consensus 414 ~~~ivG~~GsGKStl~~~l~g~~~ 437 (1198)
+++++|.+||||||+.+.|.+.+.
T Consensus 4 li~l~GlpgsGKSTla~~L~~~l~ 27 (213)
T d1bifa1 4 LIVMVGLPARGKTYISKKLTRYLN 27 (213)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999998653
|
| >d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Maize (Zea mays) [TaxId: 4577]
Probab=93.02 E-value=0.018 Score=56.74 Aligned_cols=23 Identities=35% Similarity=0.502 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhccC
Q 000984 414 TAALVGQSGSGKSTVISLIERFY 436 (1198)
Q Consensus 414 ~~~ivG~~GsGKStl~~~l~g~~ 436 (1198)
++.|.||+||||||+.+.|..-+
T Consensus 5 ~I~i~GppGsGKsT~a~~La~~~ 27 (189)
T d1zaka1 5 KVMISGAPASGKGTQCELIKTKY 27 (189)
T ss_dssp CEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 47899999999999999998765
|
| >d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=93.01 E-value=0.022 Score=55.54 Aligned_cols=23 Identities=35% Similarity=0.488 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhccC
Q 000984 414 TAALVGQSGSGKSTVISLIERFY 436 (1198)
Q Consensus 414 ~~~ivG~~GsGKStl~~~l~g~~ 436 (1198)
.+.|+||+||||||+.+.|.-.+
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~~ 24 (182)
T d1zina1 2 NLVLMGLPGAGKGTQAEKIVAAY 24 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 47899999999999999997765
|
| >d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=92.97 E-value=0.047 Score=56.64 Aligned_cols=75 Identities=16% Similarity=0.282 Sum_probs=52.8
Q ss_pred EeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCe-EEECCcccCCCChHHHHhhcceeccccccccccHHHHHhcCCCC
Q 000984 1067 KIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGH-ITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKGG 1145 (1198)
Q Consensus 1067 ~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~-I~IDG~dI~~i~l~~LR~~IsiV~Qdp~LF~gTIreNI~~g~~~ 1145 (1198)
=++.|..+-|.|++||||||++.-+..-..-..|. |+||... .++.+.+++ +++=+ +|+.+-.
T Consensus 56 G~~~g~i~e~~G~~~~GKT~l~l~~~~~~q~~g~~~vyIDtE~--~~~~e~a~~-~GvD~-----------d~il~~~-- 119 (269)
T d1mo6a1 56 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEH--ALDPDYAKK-LGVDT-----------DSLLVSQ-- 119 (269)
T ss_dssp SBCSSSEEEEECSSSSSHHHHHHHHHHHHHHTTCEEEEEESSC--CCCHHHHHH-HTCCG-----------GGCEEEC--
T ss_pred CcccceeEEEecCCCcHHHHHHHHHHHHHhcCCCEEEEEECCc--cCCHHHHHH-hCCCH-----------HHeEEec--
Confidence 58999999999999999999987777776656665 7888776 456666544 46521 4555543
Q ss_pred CCCHHHHHHHHH
Q 000984 1146 DATEAEIQAASE 1157 (1198)
Q Consensus 1146 ~~tdeei~~Al~ 1157 (1198)
..+-||+.+.++
T Consensus 120 ~~~~E~~~~~~~ 131 (269)
T d1mo6a1 120 PDTGEQALEIAD 131 (269)
T ss_dssp CSSHHHHHHHHH
T ss_pred CCCHHHHHHHHH
Confidence 246677666554
|
| >d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=92.96 E-value=0.022 Score=54.89 Aligned_cols=21 Identities=19% Similarity=0.417 Sum_probs=18.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 000984 1073 TVALVGESGSGKSTVVSLLQR 1093 (1198)
Q Consensus 1073 kvaIVG~SGSGKSTL~~lL~R 1093 (1198)
||.+||.+|+|||||++-|.+
T Consensus 7 Ki~vvG~~~vGKTsLi~~l~~ 27 (169)
T d3raba_ 7 KILIIGNSSVGKTSFLFRYAD 27 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHc
Confidence 589999999999999997753
|
| >d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus, EF-G-2 [TaxId: 274]
Probab=92.95 E-value=0.028 Score=58.42 Aligned_cols=55 Identities=25% Similarity=0.312 Sum_probs=42.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhcccC--CCCCeEEECCcccCCCChHHHHhhcceecccc
Q 000984 1073 TVALVGESGSGKSTVVSLLQRFYD--PDAGHITLDGVEIQKLQLKWLRQQMGLVSQEP 1128 (1198)
Q Consensus 1073 kvaIVG~SGSGKSTL~~lL~R~yd--p~~G~I~IDG~dI~~i~l~~LR~~IsiV~Qdp 1128 (1198)
.|||+|+.|||||||+..|+..-- ...|++. +|..+.++..++-.+++++-..-.
T Consensus 4 Nv~iiGh~~~GKTtL~e~ll~~~g~~~~~g~v~-~g~~~~D~~~~E~~r~~ti~~~~~ 60 (267)
T d2dy1a2 4 TVALVGHAGSGKTTLTEALLYKTGAKERRGRVE-EGTTTTDYTPEAKLHRTTVRTGVA 60 (267)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGG-GTCCSSCCSHHHHHTTSCCSCEEE
T ss_pred EEEEEcCCCCcHHHHHHHHHHHcCCchhhccch-hccccccchHHHHHhCCeEEeecc
Confidence 489999999999999999864332 2346554 678888999999999998776544
|
| >d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Mycoplasma pneumoniae [TaxId: 2104]
Probab=92.87 E-value=0.028 Score=54.23 Aligned_cols=33 Identities=33% Similarity=0.378 Sum_probs=26.6
Q ss_pred ccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhc
Q 000984 1060 VFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQR 1093 (1198)
Q Consensus 1060 vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R 1093 (1198)
.|+.-.+.| .|.=|.|.|+||+||||++..|.+
T Consensus 5 ~~H~~~v~~-~g~gvli~G~sG~GKS~lal~l~~ 37 (177)
T d1knxa2 5 QIHGVLLEV-FGVGVLLTGRSGIGKSECALDLIN 37 (177)
T ss_dssp EEEEEEEEE-TTEEEEEEESSSSSHHHHHHHHHT
T ss_pred eEEEEEEEE-CCEEEEEEcCCCCCHHHHHHHHHH
Confidence 466666666 788899999999999999977653
|
| >d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein RheB species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.86 E-value=0.041 Score=52.72 Aligned_cols=21 Identities=24% Similarity=0.338 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 000984 414 TAALVGQSGSGKSTVISLIER 434 (1198)
Q Consensus 414 ~~~ivG~~GsGKStl~~~l~g 434 (1198)
+|+|+|+.|+|||||++.+.+
T Consensus 6 Kv~liG~~~vGKTsLl~~~~~ 26 (167)
T d1xtqa1 6 KIAILGYRSVGKSSLTIQFVE 26 (167)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 799999999999999998764
|
| >d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Escherichia coli [TaxId: 562]
Probab=92.83 E-value=0.024 Score=57.21 Aligned_cols=24 Identities=25% Similarity=0.481 Sum_probs=21.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhcccC
Q 000984 1073 TVALVGESGSGKSTVVSLLQRFYD 1096 (1198)
Q Consensus 1073 kvaIVG~SGSGKSTL~~lL~R~yd 1096 (1198)
.|+|-||.||||||+.++|..=|.
T Consensus 5 iI~I~GppGSGKgT~ak~La~~~g 28 (225)
T d1ckea_ 5 VITIDGPSGAGKGTLCKAMAEALQ 28 (225)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 799999999999999999987765
|
| >d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.80 E-value=0.034 Score=53.53 Aligned_cols=29 Identities=31% Similarity=0.526 Sum_probs=22.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhc-----ccCCCCCe
Q 000984 1073 TVALVGESGSGKSTVVSLLQR-----FYDPDAGH 1101 (1198)
Q Consensus 1073 kvaIVG~SGSGKSTL~~lL~R-----~ydp~~G~ 1101 (1198)
||.|||.+|+|||||++-+.. -|+|+.|.
T Consensus 7 Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~ 40 (171)
T d2erya1 7 RLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIED 40 (171)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSCCCSSCCTTCCE
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCcccCccccc
Confidence 799999999999999987643 34566554
|
| >d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL5A [TaxId: 9606]
Probab=92.79 E-value=0.023 Score=54.97 Aligned_cols=23 Identities=26% Similarity=0.439 Sum_probs=20.3
Q ss_pred CCEEEEEcCCCCCHHHHHHHHhc
Q 000984 1071 GKTVALVGESGSGKSTVVSLLQR 1093 (1198)
Q Consensus 1071 GekvaIVG~SGSGKSTL~~lL~R 1093 (1198)
.=||.+||+.|||||||++.|..
T Consensus 15 ~~kI~vvG~~~~GKSsLi~rl~~ 37 (177)
T d1zj6a1 15 EHKVIIVGLDNAGKTTILYQFSM 37 (177)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHT
T ss_pred eEEEEEECCCCCCHHHHHHHHhc
Confidence 34799999999999999998875
|
| >d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus globisporus [TaxId: 1459]
Probab=92.77 E-value=0.025 Score=55.31 Aligned_cols=23 Identities=35% Similarity=0.497 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhccC
Q 000984 414 TAALVGQSGSGKSTVISLIERFY 436 (1198)
Q Consensus 414 ~~~ivG~~GsGKStl~~~l~g~~ 436 (1198)
++.|+||.||||||+.+.|...+
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~~ 24 (182)
T d1s3ga1 2 NIVLMGLPGAGKGTQADRIVEKY 24 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 47899999999999999999876
|
| >d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Thermus thermophilus [TaxId: 274]
Probab=92.76 E-value=0.023 Score=56.00 Aligned_cols=21 Identities=43% Similarity=0.657 Sum_probs=18.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 000984 414 TAALVGQSGSGKSTVISLIER 434 (1198)
Q Consensus 414 ~~~ivG~~GsGKStl~~~l~g 434 (1198)
++||+|++||||||+.+.|-.
T Consensus 5 IIgitG~~gSGKstva~~l~~ 25 (191)
T d1uf9a_ 5 IIGITGNIGSGKSTVAALLRS 25 (191)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999998853
|
| >d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyribonucleoside kinase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=92.76 E-value=0.022 Score=56.44 Aligned_cols=24 Identities=33% Similarity=0.545 Sum_probs=21.9
Q ss_pred CEEEEEcCCCCcHHHHHHHHhccC
Q 000984 413 TTAALVGQSGSGKSTVISLIERFY 436 (1198)
Q Consensus 413 ~~~~ivG~~GsGKStl~~~l~g~~ 436 (1198)
=+++|-|+.||||||+++.|...+
T Consensus 10 ~~I~ieG~~GsGKTTl~~~L~~~l 33 (197)
T d2vp4a1 10 FTVLIEGNIGSGKTTYLNHFEKYK 33 (197)
T ss_dssp EEEEEECSTTSCHHHHHHTTGGGT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 379999999999999999998865
|
| >d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein ypt7p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.73 E-value=0.025 Score=54.72 Aligned_cols=21 Identities=29% Similarity=0.588 Sum_probs=18.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 000984 1073 TVALVGESGSGKSTVVSLLQR 1093 (1198)
Q Consensus 1073 kvaIVG~SGSGKSTL~~lL~R 1093 (1198)
||++||++|+|||||++.+..
T Consensus 4 Ki~~vG~~~vGKSsLi~~~~~ 24 (175)
T d1ky3a_ 4 KVIILGDSGVGKTSLMHRYVN 24 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHc
Confidence 589999999999999998763
|
| >d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein ypt7p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.73 E-value=0.028 Score=54.34 Aligned_cols=21 Identities=24% Similarity=0.504 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 000984 414 TAALVGQSGSGKSTVISLIER 434 (1198)
Q Consensus 414 ~~~ivG~~GsGKStl~~~l~g 434 (1198)
+++++|++|+|||||++.+.+
T Consensus 4 Ki~~vG~~~vGKSsLi~~~~~ 24 (175)
T d1ky3a_ 4 KVIILGDSGVGKTSLMHRYVN 24 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHc
Confidence 589999999999999998875
|
| >d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL5A [TaxId: 9606]
Probab=92.72 E-value=0.024 Score=54.80 Aligned_cols=22 Identities=23% Similarity=0.425 Sum_probs=20.2
Q ss_pred CEEEEEcCCCCcHHHHHHHHhc
Q 000984 413 TTAALVGQSGSGKSTVISLIER 434 (1198)
Q Consensus 413 ~~~~ivG~~GsGKStl~~~l~g 434 (1198)
=+++|+|+.|||||||++.|.+
T Consensus 16 ~kI~vvG~~~~GKSsLi~rl~~ 37 (177)
T d1zj6a1 16 HKVIIVGLDNAGKTTILYQFSM 37 (177)
T ss_dssp EEEEEEESTTSSHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHhc
Confidence 3789999999999999999887
|
| >d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Phosphoribulokinase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=92.69 E-value=0.014 Score=61.00 Aligned_cols=24 Identities=29% Similarity=0.610 Sum_probs=18.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcccC
Q 000984 1073 TVALVGESGSGKSTVVSLLQRFYD 1096 (1198)
Q Consensus 1073 kvaIVG~SGSGKSTL~~lL~R~yd 1096 (1198)
.|||.|.|||||||+.+.|...+.
T Consensus 6 IIgIaG~SGSGKTTva~~l~~i~~ 29 (288)
T d1a7ja_ 6 IISVTGSSGAGTSTVKHTFDQIFR 29 (288)
T ss_dssp EEEEESCC---CCTHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHHh
Confidence 699999999999999999887664
|
| >d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Extracellular secretion NTPase EpsE species: Vibrio cholerae [TaxId: 666]
Probab=92.68 E-value=0.025 Score=62.87 Aligned_cols=53 Identities=13% Similarity=0.266 Sum_probs=36.2
Q ss_pred HhHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhCCCeEEEEecCcchhhccCE
Q 000984 531 IAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADM 589 (1198)
Q Consensus 531 i~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~~d~ 589 (1198)
-+|..+|=++|||+++.|.. |.++.+... +....|+.|+..-|--+.+.-.+|
T Consensus 218 ~~l~~~lR~dPDvi~igEiR---d~~ta~~a~---~aa~tGhlV~tTlHa~~a~~~~~R 270 (401)
T d1p9ra_ 218 RGLRAILRQDPDVVMVGEIR---DLETAQIAV---QASLTGHLVMSTLHTNTAVGAVTR 270 (401)
T ss_dssp HHHHHHGGGCCSEEEESCCC---SHHHHHHHH---HHHHTTCEEEEEECCSSSHHHHHH
T ss_pred HHHHHHHhhcCCEEEecCcC---ChHHHHHHH---HHHhcCCeEEEEeccCchHhhhhh
Confidence 34666777899999999986 666655443 334457888888887665544444
|
| >d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-inducible GTPase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=92.66 E-value=0.027 Score=62.58 Aligned_cols=28 Identities=32% Similarity=0.593 Sum_probs=23.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhccCCCCCC
Q 000984 414 TAALVGQSGSGKSTVISLIERFYDPQAG 441 (1198)
Q Consensus 414 ~~~ivG~~GsGKStl~~~l~g~~~~~~G 441 (1198)
.|+|+|++|+|||||+++|.|.-.-..|
T Consensus 58 ~Iai~G~~n~GKSSLiNaL~G~~~~~~~ 85 (400)
T d1tq4a_ 58 NVAVTGETGSGKSSFINTLRGIGNEEEG 85 (400)
T ss_dssp EEEEEECTTSSHHHHHHHHHTCCTTSTT
T ss_pred EEEEECCCCCCHHHHHHHHhCCCcCCCc
Confidence 4899999999999999999996533333
|
| >d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit species: Streptococcus pyogenes [TaxId: 1314]
Probab=92.66 E-value=0.024 Score=59.09 Aligned_cols=32 Identities=34% Similarity=0.376 Sum_probs=25.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECC
Q 000984 414 TAALVGQSGSGKSTVISLIERFYDPQAGEVLIDG 447 (1198)
Q Consensus 414 ~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g 447 (1198)
-+.++||+|||||||.++|++.+.. +-+.+++
T Consensus 34 ~ilL~GpPGtGKT~la~~la~~~~~--~~~~i~~ 65 (273)
T d1gvnb_ 34 AFLLGGQPGSGKTSLRSAIFEETQG--NVIVIDN 65 (273)
T ss_dssp EEEEECCTTSCTHHHHHHHHHHTTT--CCEEECT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhc--ceEEEec
Confidence 5889999999999999999998743 3455554
|
| >d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.65 E-value=0.034 Score=53.10 Aligned_cols=28 Identities=21% Similarity=0.529 Sum_probs=22.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhc-----ccCCCCC
Q 000984 1073 TVALVGESGSGKSTVVSLLQR-----FYDPDAG 1100 (1198)
Q Consensus 1073 kvaIVG~SGSGKSTL~~lL~R-----~ydp~~G 1100 (1198)
||++||..|+|||||++-+.. -|+|+.|
T Consensus 2 Kv~vvG~~~vGKTsLi~r~~~~~~~~~~~~~~~ 34 (164)
T d1yzqa1 2 KLVFLGEQSVGKTSLITRFMYDSFDNTYQATIG 34 (164)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCS
T ss_pred EEEEECCCCcCHHHHHHHHHhCCCCCcccccee
Confidence 799999999999999998863 4455544
|
| >d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=92.65 E-value=0.025 Score=54.33 Aligned_cols=23 Identities=43% Similarity=0.553 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhccC
Q 000984 414 TAALVGQSGSGKSTVISLIERFY 436 (1198)
Q Consensus 414 ~~~ivG~~GsGKStl~~~l~g~~ 436 (1198)
.+.++|++||||||+.+.|...+
T Consensus 3 ~IvliG~~G~GKSTig~~La~~l 25 (165)
T d2iyva1 3 KAVLVGLPGSGKSTIGRRLAKAL 25 (165)
T ss_dssp SEEEECSTTSSHHHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHHHh
Confidence 36788999999999999998765
|
| >d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.60 E-value=0.027 Score=55.57 Aligned_cols=23 Identities=30% Similarity=0.452 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhccC
Q 000984 414 TAALVGQSGSGKSTVISLIERFY 436 (1198)
Q Consensus 414 ~~~ivG~~GsGKStl~~~l~g~~ 436 (1198)
++.|+||+||||||..+.|...+
T Consensus 3 iI~i~GppGSGKsT~a~~La~~~ 25 (194)
T d1teva_ 3 VVFVLGGPGAGKGTQCARIVEKY 25 (194)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998765
|
| >d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab23 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=92.59 E-value=0.027 Score=53.94 Aligned_cols=21 Identities=24% Similarity=0.491 Sum_probs=18.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 000984 1073 TVALVGESGSGKSTVVSLLQR 1093 (1198)
Q Consensus 1073 kvaIVG~SGSGKSTL~~lL~R 1093 (1198)
||++||.+|+|||||++-+..
T Consensus 4 Kv~liG~~~vGKSsLi~rl~~ 24 (164)
T d1z2aa1 4 KMVVVGNGAVGKSSMIQRYCK 24 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 589999999999999986663
|
| >d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: LAO/AO transport system kinase ArgK species: Escherichia coli [TaxId: 562]
Probab=92.58 E-value=0.019 Score=61.80 Aligned_cols=26 Identities=23% Similarity=0.339 Sum_probs=22.8
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhccCC
Q 000984 412 GTTAALVGQSGSGKSTVISLIERFYD 437 (1198)
Q Consensus 412 g~~~~ivG~~GsGKStl~~~l~g~~~ 437 (1198)
.-.+||+|++|+|||||+..|.+.+.
T Consensus 54 ~~~IgitG~pGaGKSTLi~~l~~~~~ 79 (327)
T d2p67a1 54 TLRLGVTGTPGAGKSTFLEAFGMLLI 79 (327)
T ss_dssp SEEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred ceEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 34899999999999999999987663
|
| >d1g8fa3 c.37.1.15 (A:390-511) ATP sulfurylase C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.55 E-value=0.028 Score=50.06 Aligned_cols=42 Identities=12% Similarity=0.169 Sum_probs=31.7
Q ss_pred eCCCEEEEEcCCCCCHHHHHHHH-hcccCCCCC-eEE-ECCcccC
Q 000984 1069 RAGKTVALVGESGSGKSTVVSLL-QRFYDPDAG-HIT-LDGVEIQ 1110 (1198)
Q Consensus 1069 ~~GekvaIVG~SGSGKSTL~~lL-~R~ydp~~G-~I~-IDG~dI~ 1110 (1198)
+.|=+|-+-|-+|||||||+++| .+|.+-+.| .|. +||.+++
T Consensus 4 kqgf~i~~tg~~~~gk~~ia~al~~~l~q~~G~R~vtll~~~ni~ 48 (122)
T d1g8fa3 4 KQGFSIVLGNSLTVSREQLSIALLSTFLQFGGGRYYKIFEHNNKT 48 (122)
T ss_dssp GCCEEEEECTTCCSCHHHHHHHHHHHHTTSCSCCCEEECCCTTCH
T ss_pred ccceEEEEeCCCCCCHHHHHHHHHHHHHHhcCCcceEEecCCCHH
Confidence 45678889999999999999877 677775444 355 5777663
|
| >d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL3 [TaxId: 10090]
Probab=92.48 E-value=0.025 Score=54.69 Aligned_cols=21 Identities=29% Similarity=0.521 Sum_probs=19.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 000984 1073 TVALVGESGSGKSTVVSLLQR 1093 (1198)
Q Consensus 1073 kvaIVG~SGSGKSTL~~lL~R 1093 (1198)
||++||++|+|||||++.|.+
T Consensus 18 kI~vvG~~~vGKSsLi~~l~~ 38 (176)
T d1fzqa_ 18 RILLLGLDNAGKTTLLKQLAS 38 (176)
T ss_dssp EEEEEESTTSSHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 699999999999999998754
|
| >d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein Ygr205W species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.35 E-value=0.023 Score=59.43 Aligned_cols=22 Identities=27% Similarity=0.326 Sum_probs=18.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcc
Q 000984 1073 TVALVGESGSGKSTVVSLLQRF 1094 (1198)
Q Consensus 1073 kvaIVG~SGSGKSTL~~lL~R~ 1094 (1198)
.|||-|++|||||||...|...
T Consensus 29 iIGi~G~qGSGKSTl~~~l~~~ 50 (286)
T d1odfa_ 29 FIFFSGPQGSGKSFTSIQIYNH 50 (286)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEeECCCCCCHHHHHHHHHHH
Confidence 5899999999999999876543
|
| >d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Escherichia coli [TaxId: 562]
Probab=92.32 E-value=0.033 Score=55.51 Aligned_cols=38 Identities=24% Similarity=0.442 Sum_probs=26.1
Q ss_pred CEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCccc
Q 000984 1072 KTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEI 1109 (1198)
Q Consensus 1072 ekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI 1109 (1198)
..+++|||+|+||||.+.=|...+.-..-+|.+=..|.
T Consensus 10 ~vi~lvGptGvGKTTTiAKLA~~~~~~g~kV~lit~Dt 47 (211)
T d2qy9a2 10 FVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDT 47 (211)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHHTTTCCEEEECCCT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEeccc
Confidence 46899999999998877656665653434565544444
|
| >d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-like estrogen-regulated growth inhibitor, RERG species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.32 E-value=0.062 Score=51.51 Aligned_cols=21 Identities=29% Similarity=0.498 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 000984 414 TAALVGQSGSGKSTVISLIER 434 (1198)
Q Consensus 414 ~~~ivG~~GsGKStl~~~l~g 434 (1198)
+++++|+.|+|||||++-+.+
T Consensus 4 Ki~lvG~~~vGKTsli~r~~~ 24 (168)
T d2atva1 4 KLAIFGRAGVGKSALVVRFLT 24 (168)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 689999999999999988874
|
| >d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=92.32 E-value=0.03 Score=56.03 Aligned_cols=38 Identities=34% Similarity=0.358 Sum_probs=28.7
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHhccCCC--CCCeEEECC
Q 000984 410 SSGTTAALVGQSGSGKSTVISLIERFYDP--QAGEVLIDG 447 (1198)
Q Consensus 410 ~~g~~~~ivG~~GsGKStl~~~l~g~~~~--~~G~i~i~g 447 (1198)
++|-++.++|.+|||||||.+.|...+.. .--.+.+||
T Consensus 22 ~kg~vIwltGlsGsGKTTia~~L~~~l~~~~~~~~~~ldg 61 (208)
T d1m7ga_ 22 QRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDG 61 (208)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCceEEEEcc
Confidence 57889999999999999999999754321 113466776
|
| >d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab21 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.31 E-value=0.042 Score=52.64 Aligned_cols=20 Identities=35% Similarity=0.473 Sum_probs=18.3
Q ss_pred EEEEEcCCCCCHHHHHHHHh
Q 000984 1073 TVALVGESGSGKSTVVSLLQ 1092 (1198)
Q Consensus 1073 kvaIVG~SGSGKSTL~~lL~ 1092 (1198)
||.|||.+|+|||||++-+.
T Consensus 5 KivlvG~~~vGKTsLi~r~~ 24 (167)
T d1z08a1 5 KVVLLGEGCVGKTSLVLRYC 24 (167)
T ss_dssp EEEEECCTTSCHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHH
Confidence 68999999999999999765
|
| >d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=92.28 E-value=0.032 Score=54.39 Aligned_cols=23 Identities=35% Similarity=0.452 Sum_probs=20.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhccc
Q 000984 1073 TVALVGESGSGKSTVVSLLQRFY 1095 (1198)
Q Consensus 1073 kvaIVG~SGSGKSTL~~lL~R~y 1095 (1198)
++.|.||.||||||+++.|..-|
T Consensus 2 ~I~i~G~pGsGKsT~a~~La~~~ 24 (181)
T d2cdna1 2 RVLLLGPPGAGKGTQAVKLAEKL 24 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 57899999999999999998766
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.26 E-value=0.034 Score=62.04 Aligned_cols=41 Identities=22% Similarity=0.472 Sum_probs=28.9
Q ss_pred cEEEeeeeEECCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHH
Q 000984 1042 EIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLL 1091 (1198)
Q Consensus 1042 ~I~f~nVsf~Y~~~~~~~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL 1091 (1198)
.|+++|. .+|.+ ...|+| .++...+|+|++||||||++.+|
T Consensus 5 ~l~l~NF-ks~~~------~~~i~f--~~~~l~~i~G~NGsGKS~ileAi 45 (427)
T d1w1wa_ 5 GLELSNF-KSYRG------VTKVGF--GESNFTSIIGPNGSGKSNMMDAI 45 (427)
T ss_dssp EEEEESC-SSCCS------EEEEEC--TTCSEEEEECSTTSSHHHHHHHH
T ss_pred EEEEeCe-eeeCC------CEEEeC--CCCCEEEEECCCCCCHHHHHHHH
Confidence 4778874 24531 123333 54568999999999999999998
|
| >d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Thermotoga maritima [TaxId: 2336]
Probab=92.19 E-value=0.033 Score=59.33 Aligned_cols=21 Identities=38% Similarity=0.716 Sum_probs=19.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 000984 1073 TVALVGESGSGKSTVVSLLQR 1093 (1198)
Q Consensus 1073 kvaIVG~SGSGKSTL~~lL~R 1093 (1198)
...|||++||||||++.+|.-
T Consensus 26 lnvlvG~NgsGKS~iL~Ai~~ 46 (308)
T d1e69a_ 26 VTAIVGPNGSGKSNIIDAIKW 46 (308)
T ss_dssp EEEEECCTTTCSTHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHH
Confidence 789999999999999988843
|
| >d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Lactobacillus casei [TaxId: 1582]
Probab=92.18 E-value=0.046 Score=52.58 Aligned_cols=26 Identities=35% Similarity=0.363 Sum_probs=21.5
Q ss_pred eeCCCEEEEEcCCCCCHHHHHHHHhc
Q 000984 1068 IRAGKTVALVGESGSGKSTVVSLLQR 1093 (1198)
Q Consensus 1068 I~~GekvaIVG~SGSGKSTL~~lL~R 1093 (1198)
--.|.=|.|+|+||+||||++..|.+
T Consensus 11 ~~~g~gvl~~G~sG~GKStlal~l~~ 36 (176)
T d1kkma_ 11 DIYGLGVLITGDSGVGKSETALELVQ 36 (176)
T ss_dssp EETTEEEEEECCTTSCHHHHHHHHHH
T ss_pred EECCEEEEEEeCCCCCHHHHHHHHHH
Confidence 34577899999999999999977653
|
| >d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ypt51 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.17 E-value=0.053 Score=52.01 Aligned_cols=28 Identities=32% Similarity=0.532 Sum_probs=21.8
Q ss_pred EEEEEcCCCCCHHHHHHHHh-cc----cCCCCC
Q 000984 1073 TVALVGESGSGKSTVVSLLQ-RF----YDPDAG 1100 (1198)
Q Consensus 1073 kvaIVG~SGSGKSTL~~lL~-R~----ydp~~G 1100 (1198)
||++||..|+|||||++-+. +- |+|+.|
T Consensus 5 Ki~vvG~~~vGKTsLi~~~~~~~f~~~~~~t~~ 37 (170)
T d1ek0a_ 5 KLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIG 37 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSS
T ss_pred EEEEECCCCcCHHHHHHHHHhCCCCcccccccc
Confidence 79999999999999998654 22 445555
|
| >d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Probab=92.16 E-value=0.022 Score=55.66 Aligned_cols=24 Identities=33% Similarity=0.580 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhccCC
Q 000984 414 TAALVGQSGSGKSTVISLIERFYD 437 (1198)
Q Consensus 414 ~~~ivG~~GsGKStl~~~l~g~~~ 437 (1198)
++.|.|++||||||+++.|...+.
T Consensus 3 iivi~G~~GsGKTT~~~~La~~L~ 26 (194)
T d1nksa_ 3 IGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 577899999999999999987763
|
| >d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: YjeE-like domain: Hypothetical protein HI0065 species: Haemophilus influenzae [TaxId: 727]
Probab=92.15 E-value=0.038 Score=52.14 Aligned_cols=31 Identities=19% Similarity=0.177 Sum_probs=27.2
Q ss_pred EEeCCCEEEEEcCCCCcHHHHHHHHhccCCC
Q 000984 408 SISSGTTAALVGQSGSGKSTVISLIERFYDP 438 (1198)
Q Consensus 408 ~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~ 438 (1198)
..+||.++++.|+-||||||+.+.+++-+-.
T Consensus 29 ~~~~g~ii~L~G~LGaGKTtfvr~~~~~lg~ 59 (158)
T d1htwa_ 29 HTEKAIMVYLNGDLGAGKTTLTRGMLQGIGH 59 (158)
T ss_dssp CCSSCEEEEEECSTTSSHHHHHHHHHHHTTC
T ss_pred cCCCCeEEEEecCCCccHHHHHHHHHhhccc
Confidence 3468999999999999999999999987643
|
| >d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=92.15 E-value=0.032 Score=53.71 Aligned_cols=21 Identities=19% Similarity=0.360 Sum_probs=19.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 000984 414 TAALVGQSGSGKSTVISLIER 434 (1198)
Q Consensus 414 ~~~ivG~~GsGKStl~~~l~g 434 (1198)
+++++|++|+|||||++.+.+
T Consensus 7 Ki~vvG~~~vGKTsLi~~l~~ 27 (169)
T d3raba_ 7 KILIIGNSSVGKTSFLFRYAD 27 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHc
Confidence 489999999999999998864
|
| >d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Haemophilus influenzae [TaxId: 727]
Probab=92.14 E-value=0.032 Score=55.75 Aligned_cols=20 Identities=40% Similarity=0.642 Sum_probs=18.2
Q ss_pred EEEEEcCCCCcHHHHHHHHh
Q 000984 414 TAALVGQSGSGKSTVISLIE 433 (1198)
Q Consensus 414 ~~~ivG~~GsGKStl~~~l~ 433 (1198)
++||+|..||||||+++.+-
T Consensus 4 iIgITG~igSGKStv~~~l~ 23 (205)
T d1jjva_ 4 IVGLTGGIGSGKTTIANLFT 23 (205)
T ss_dssp EEEEECSTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 68999999999999999774
|
| >d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab7 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=92.13 E-value=0.033 Score=54.42 Aligned_cols=21 Identities=29% Similarity=0.615 Sum_probs=18.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 000984 1073 TVALVGESGSGKSTVVSLLQR 1093 (1198)
Q Consensus 1073 kvaIVG~SGSGKSTL~~lL~R 1093 (1198)
||++||.+|+|||||++-+..
T Consensus 4 Kv~vvG~~~vGKSSLi~~l~~ 24 (184)
T d1vg8a_ 4 KVIILGDSGVGKTSLMNQYVN 24 (184)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 689999999999999987763
|
| >d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermus aquaticus [TaxId: 271]
Probab=92.04 E-value=0.038 Score=54.98 Aligned_cols=27 Identities=37% Similarity=0.735 Sum_probs=22.5
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhccCC
Q 000984 411 SGTTAALVGQSGSGKSTVISLIERFYD 437 (1198)
Q Consensus 411 ~g~~~~ivG~~GsGKStl~~~l~g~~~ 437 (1198)
++..+++|||+|+||||.+--|...+.
T Consensus 5 ~~~vi~lvGptGvGKTTTiaKLA~~~~ 31 (207)
T d1okkd2 5 KGRVVLVVGVNGVGKTTTIAKLGRYYQ 31 (207)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 467899999999999999877776553
|
| >d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Escherichia coli [TaxId: 562]
Probab=92.04 E-value=0.033 Score=54.16 Aligned_cols=23 Identities=30% Similarity=0.408 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhccC
Q 000984 414 TAALVGQSGSGKSTVISLIERFY 436 (1198)
Q Consensus 414 ~~~ivG~~GsGKStl~~~l~g~~ 436 (1198)
++.|+||.||||||..+.|.--+
T Consensus 2 ~I~i~G~pGSGKsT~~~~La~~~ 24 (179)
T d1e4va1 2 RIILLGAPVAGKGTQAQFIMEKY 24 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998765
|
| >d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=92.00 E-value=0.045 Score=58.41 Aligned_cols=41 Identities=17% Similarity=0.465 Sum_probs=32.3
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCC
Q 000984 1070 AGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKL 1112 (1198)
Q Consensus 1070 ~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~~i 1112 (1198)
|+.-+.++||||+|||+|+++|.+.... --+.+|+-++.+.
T Consensus 48 ~~~~iLl~GPpG~GKT~lAkalA~~~~~--~~~~i~~s~~~~~ 88 (309)
T d1ofha_ 48 TPKNILMIGPTGVGKTEIARRLAKLANA--PFIKVEATKFTEV 88 (309)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHTC--CEEEEEGGGGSSC
T ss_pred CCceEEEECCCCCCHHHHHHHHhhcccc--chhcccccccccc
Confidence 3455679999999999999999998753 3688888776533
|
| >d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Escherichia coli [TaxId: 562]
Probab=91.98 E-value=0.035 Score=55.54 Aligned_cols=21 Identities=52% Similarity=0.654 Sum_probs=18.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 000984 1073 TVALVGESGSGKSTVVSLLQR 1093 (1198)
Q Consensus 1073 kvaIVG~SGSGKSTL~~lL~R 1093 (1198)
.|||+|..||||||+++.|..
T Consensus 5 iIgitG~igSGKStv~~~l~~ 25 (208)
T d1vhta_ 5 IVALTGGIGSGKSTVANAFAD 25 (208)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCcCCHHHHHHHHHH
Confidence 589999999999999998753
|
| >d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.95 E-value=0.056 Score=51.94 Aligned_cols=21 Identities=29% Similarity=0.409 Sum_probs=18.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 000984 414 TAALVGQSGSGKSTVISLIER 434 (1198)
Q Consensus 414 ~~~ivG~~GsGKStl~~~l~g 434 (1198)
+++|+|.+|||||||++.+.+
T Consensus 7 Ki~lvG~~~vGKTsLi~r~~~ 27 (171)
T d2erya1 7 RLVVVGGGGVGKSALTIQFIQ 27 (171)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 699999999999999987654
|
| >d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxycytidine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.95 E-value=0.026 Score=57.66 Aligned_cols=27 Identities=19% Similarity=0.432 Sum_probs=24.1
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhccCC
Q 000984 411 SGTTAALVGQSGSGKSTVISLIERFYD 437 (1198)
Q Consensus 411 ~g~~~~ivG~~GsGKStl~~~l~g~~~ 437 (1198)
++.+++|-|+.||||||+++.|...++
T Consensus 1 ~~k~I~ieG~dGsGKST~~~~L~~~l~ 27 (241)
T d1p5zb_ 1 RIKKISIEGNIAAGKSTFVNILKQLCE 27 (241)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHh
Confidence 367899999999999999999998763
|
| >d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.92 E-value=0.04 Score=56.23 Aligned_cols=26 Identities=23% Similarity=0.450 Sum_probs=23.5
Q ss_pred EeCCCEEEEEcCCCCcHHHHHHHHhc
Q 000984 409 ISSGTTAALVGQSGSGKSTVISLIER 434 (1198)
Q Consensus 409 i~~g~~~~ivG~~GsGKStl~~~l~g 434 (1198)
+++|+.+.|.|++|||||||+.-++-
T Consensus 31 i~~G~~~li~G~pGsGKT~l~lq~~~ 56 (251)
T d1szpa2 31 VETGSITELFGEFRTGKSQLCHTLAV 56 (251)
T ss_dssp EESSSEEEEEESTTSSHHHHHHHHTT
T ss_pred CcCCeEEEEEcCCCCCHHHHHHHHHH
Confidence 88999999999999999999976653
|
| >d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab27b species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.91 E-value=0.037 Score=54.10 Aligned_cols=21 Identities=29% Similarity=0.472 Sum_probs=18.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 000984 1073 TVALVGESGSGKSTVVSLLQR 1093 (1198)
Q Consensus 1073 kvaIVG~SGSGKSTL~~lL~R 1093 (1198)
||+|||.+|+|||||++-|..
T Consensus 7 Ki~ivG~~~vGKTsLi~~l~~ 27 (186)
T d2f7sa1 7 KLLALGDSGVGKTTFLYRYTD 27 (186)
T ss_dssp EEEEESCTTSSHHHHHHHHHC
T ss_pred EEEEECCCCcCHHHHHHHHhc
Confidence 489999999999999988764
|
| >d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=91.87 E-value=0.036 Score=55.90 Aligned_cols=23 Identities=39% Similarity=0.564 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhccC
Q 000984 414 TAALVGQSGSGKSTVISLIERFY 436 (1198)
Q Consensus 414 ~~~ivG~~GsGKStl~~~l~g~~ 436 (1198)
.++|-||+||||||+.+.|...+
T Consensus 5 ~IaIdGp~GsGKgT~ak~La~~l 27 (223)
T d1q3ta_ 5 QIAIDGPASSGKSTVAKIIAKDF 27 (223)
T ss_dssp EEEEECSSCSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 57888999999999999999876
|
| >d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.85 E-value=0.038 Score=55.34 Aligned_cols=28 Identities=32% Similarity=0.319 Sum_probs=24.2
Q ss_pred eCCCEEEEEcCCCCCHHHHHHHHhcccC
Q 000984 1069 RAGKTVALVGESGSGKSTVVSLLQRFYD 1096 (1198)
Q Consensus 1069 ~~GekvaIVG~SGSGKSTL~~lL~R~yd 1096 (1198)
+.|..|+|.|+-||||||++++|..-+.
T Consensus 1 ~rG~lI~ieG~dGsGKsT~~~~L~~~L~ 28 (209)
T d1nn5a_ 1 RRGALIVLEGVDRAGKSTQSRKLVEALC 28 (209)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCeeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4688999999999999999999877543
|
| >d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap2a species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.85 E-value=0.038 Score=52.98 Aligned_cols=21 Identities=29% Similarity=0.510 Sum_probs=18.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 000984 1073 TVALVGESGSGKSTVVSLLQR 1093 (1198)
Q Consensus 1073 kvaIVG~SGSGKSTL~~lL~R 1093 (1198)
||.+||.+|+|||||++.+..
T Consensus 5 Ki~lvG~~~vGKTsLi~r~~~ 25 (167)
T d1kaoa_ 5 KVVVLGSGGVGKSALTVQFVT 25 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 799999999999999987754
|
| >d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: cH-p21 Ras protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.84 E-value=0.035 Score=53.21 Aligned_cols=21 Identities=33% Similarity=0.547 Sum_probs=18.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 000984 1073 TVALVGESGSGKSTVVSLLQR 1093 (1198)
Q Consensus 1073 kvaIVG~SGSGKSTL~~lL~R 1093 (1198)
||++||.+|+|||||++.|..
T Consensus 5 Ki~viG~~~vGKTsli~~l~~ 25 (166)
T d1ctqa_ 5 KLVVVGAGGVGKSALTIQLIQ 25 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 699999999999999987753
|
| >d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab11b species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.81 E-value=0.037 Score=53.52 Aligned_cols=21 Identities=48% Similarity=0.803 Sum_probs=18.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 000984 1073 TVALVGESGSGKSTVVSLLQR 1093 (1198)
Q Consensus 1073 kvaIVG~SGSGKSTL~~lL~R 1093 (1198)
|+++||+.|+|||||++-+..
T Consensus 6 Ki~vvG~~~vGKTsLi~~~~~ 26 (175)
T d2f9la1 6 KVVLIGDSGVGKSNLLSRFTR 26 (175)
T ss_dssp EEEEESSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 699999999999999997643
|
| >d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Extracellular secretion NTPase EpsE species: Vibrio cholerae [TaxId: 666]
Probab=91.79 E-value=0.043 Score=60.83 Aligned_cols=88 Identities=20% Similarity=0.303 Sum_probs=49.8
Q ss_pred eCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCe-EEECCcccCCCChHHHHhhcceeccccccccccHHHHHhcCCC---
Q 000984 1069 RAGKTVALVGESGSGKSTVVSLLQRFYDPDAGH-ITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKG--- 1144 (1198)
Q Consensus 1069 ~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~-I~IDG~dI~~i~l~~LR~~IsiV~Qdp~LF~gTIreNI~~g~~--- 1144 (1198)
.++-.+-|.|||||||||.+..+++..+....+ |.|-. ++ ++.+...+ ++-+.+.+..=|..=++.-++.++.
T Consensus 156 ~~~GliLvtGpTGSGKSTTl~~~l~~~~~~~~~i~tiEd-Pi-E~~~~~~~-q~~v~~~~~~~~~~~l~~~lR~dPDvi~ 232 (401)
T d1p9ra_ 156 RPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVED-PI-EFDIDGIG-QTQVNPRVDMTFARGLRAILRQDPDVVM 232 (401)
T ss_dssp SSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEES-SC-CSCCSSSE-EEECBGGGTBCHHHHHHHHGGGCCSEEE
T ss_pred hhhceEEEEcCCCCCccHHHHHHhhhhcCCCceEEEecc-Cc-ccccCCCC-eeeecCCcCCCHHHHHHHHHhhcCCEEE
Confidence 456779999999999999999999976544344 44421 22 22222211 2233333333366667777776632
Q ss_pred -CCCCHHH-HHHHHHHc
Q 000984 1145 -GDATEAE-IQAASEMA 1159 (1198)
Q Consensus 1145 -~~~tdee-i~~Al~~A 1159 (1198)
++..|.| ...|++.|
T Consensus 233 igEiRd~~ta~~a~~aa 249 (401)
T d1p9ra_ 233 VGEIRDLETAQIAVQAS 249 (401)
T ss_dssp ESCCCSHHHHHHHHHHH
T ss_pred ecCcCChHHHHHHHHHH
Confidence 2445544 44444444
|
| >d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.78 E-value=0.037 Score=55.14 Aligned_cols=21 Identities=24% Similarity=0.346 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 000984 414 TAALVGQSGSGKSTVISLIER 434 (1198)
Q Consensus 414 ~~~ivG~~GsGKStl~~~l~g 434 (1198)
.|+|+|+.|||||||++.|.+
T Consensus 2 ~V~ivG~~~~GKTsLl~~l~~ 22 (207)
T d2fh5b1 2 AVLFVGLCDSGKTLLFVRLLT 22 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 689999999999999999986
|
| >d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermotoga maritima [TaxId: 2336]
Probab=91.77 E-value=0.047 Score=55.66 Aligned_cols=54 Identities=20% Similarity=0.286 Sum_probs=39.3
Q ss_pred EEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHhhcceeccccccc
Q 000984 1074 VALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLF 1131 (1198)
Q Consensus 1074 vaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~~i~l~~LR~~IsiV~Qdp~LF 1131 (1198)
+-+.||+|+||||++++|.+-+... .+.++|.+.. ...++++.+.-..+...+|
T Consensus 38 ~L~~GPpGtGKT~lA~~la~~~~~~--~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 91 (238)
T d1in4a2 38 VLLAGPPGLGKTTLAHIIASELQTN--IHVTSGPVLV--KQGDMAAILTSLERGDVLF 91 (238)
T ss_dssp EEEESSTTSSHHHHHHHHHHHHTCC--EEEEETTTCC--SHHHHHHHHHHCCTTCEEE
T ss_pred EEEECCCCCcHHHHHHHHHhccCCC--cccccCcccc--cHHHHHHHHHhhccCCchH
Confidence 6899999999999999999998866 4556777764 3456665555544444444
|
| >d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermotoga maritima [TaxId: 2336]
Probab=91.75 E-value=0.035 Score=55.47 Aligned_cols=33 Identities=24% Similarity=0.483 Sum_probs=21.0
Q ss_pred CEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEE
Q 000984 1072 KTVALVGESGSGKSTVVSLLQRFYDPDAGHITL 1104 (1198)
Q Consensus 1072 ekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~I 1104 (1198)
..+++|||+|+||||.+.=|...+--..-+|.+
T Consensus 12 ~vi~lvGptGvGKTTTiAKLAa~~~~~~~kV~l 44 (213)
T d1vmaa2 12 FVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVL 44 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHCCCceEE
Confidence 468999999999988754444333323334433
|
| >d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab23 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.72 E-value=0.038 Score=52.77 Aligned_cols=21 Identities=29% Similarity=0.445 Sum_probs=18.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 000984 414 TAALVGQSGSGKSTVISLIER 434 (1198)
Q Consensus 414 ~~~ivG~~GsGKStl~~~l~g 434 (1198)
+++++|++|+|||||++.+.+
T Consensus 4 Kv~liG~~~vGKSsLi~rl~~ 24 (164)
T d1z2aa1 4 KMVVVGNGAVGKSSMIQRYCK 24 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 589999999999999987764
|
| >d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rad species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.71 E-value=0.036 Score=53.25 Aligned_cols=24 Identities=33% Similarity=0.555 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhcccC
Q 000984 1073 TVALVGESGSGKSTVVSLLQRFYD 1096 (1198)
Q Consensus 1073 kvaIVG~SGSGKSTL~~lL~R~yd 1096 (1198)
||++||.+|+|||||++.+.+...
T Consensus 3 Ki~lvG~~~vGKTsLi~~~~~~~~ 26 (168)
T d2gjsa1 3 KVLLLGAPGVGKSALARIFGGVED 26 (168)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC--
T ss_pred EEEEECCCCcCHHHHHHHHhCCcc
Confidence 689999999999999998876543
|
| >d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL8A [TaxId: 9606]
Probab=91.70 E-value=0.039 Score=52.67 Aligned_cols=20 Identities=40% Similarity=0.576 Sum_probs=18.1
Q ss_pred EEEEEcCCCCCHHHHHHHHh
Q 000984 1073 TVALVGESGSGKSTVVSLLQ 1092 (1198)
Q Consensus 1073 kvaIVG~SGSGKSTL~~lL~ 1092 (1198)
||.++|++|+|||||++.|.
T Consensus 4 ki~i~G~~~~GKTsLl~~l~ 23 (164)
T d1zd9a1 4 ELTLVGLQYSGKTTFVNVIA 23 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 68999999999999999664
|
| >d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=91.67 E-value=0.041 Score=53.54 Aligned_cols=23 Identities=26% Similarity=0.381 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhccC
Q 000984 414 TAALVGQSGSGKSTVISLIERFY 436 (1198)
Q Consensus 414 ~~~ivG~~GsGKStl~~~l~g~~ 436 (1198)
.+.|.||+||||||+.+.|..-+
T Consensus 2 ~I~i~G~pGsGKsT~a~~La~~~ 24 (181)
T d2cdna1 2 RVLLLGPPGAGKGTQAVKLAEKL 24 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 47899999999999999998765
|
| >d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Mycoplasma pneumoniae [TaxId: 2104]
Probab=91.62 E-value=0.054 Score=52.13 Aligned_cols=33 Identities=27% Similarity=0.362 Sum_probs=26.9
Q ss_pred cccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhc
Q 000984 401 IFSGFSISISSGTTAALVGQSGSGKSTVISLIER 434 (1198)
Q Consensus 401 ~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g 434 (1198)
.++.--+.+ .|.=+.|+|+||+||||+...|..
T Consensus 5 ~~H~~~v~~-~g~gvli~G~sG~GKS~lal~l~~ 37 (177)
T d1knxa2 5 QIHGVLLEV-FGVGVLLTGRSGIGKSECALDLIN 37 (177)
T ss_dssp EEEEEEEEE-TTEEEEEEESSSSSHHHHHHHHHT
T ss_pred eEEEEEEEE-CCEEEEEEcCCCCCHHHHHHHHHH
Confidence 456655666 788999999999999999987764
|
| >d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Phosphoribulokinase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=91.60 E-value=0.026 Score=58.95 Aligned_cols=23 Identities=30% Similarity=0.590 Sum_probs=18.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhccC
Q 000984 414 TAALVGQSGSGKSTVISLIERFY 436 (1198)
Q Consensus 414 ~~~ivG~~GsGKStl~~~l~g~~ 436 (1198)
++||.|+|||||||+.+.|...+
T Consensus 6 IIgIaG~SGSGKTTva~~l~~i~ 28 (288)
T d1a7ja_ 6 IISVTGSSGAGTSTVKHTFDQIF 28 (288)
T ss_dssp EEEEESCC---CCTHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHH
Confidence 79999999999999999987755
|
| >d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL3 [TaxId: 10090]
Probab=91.58 E-value=0.038 Score=53.41 Aligned_cols=21 Identities=24% Similarity=0.479 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 000984 414 TAALVGQSGSGKSTVISLIER 434 (1198)
Q Consensus 414 ~~~ivG~~GsGKStl~~~l~g 434 (1198)
+++++|+.|+|||||++.+.+
T Consensus 18 kI~vvG~~~vGKSsLi~~l~~ 38 (176)
T d1fzqa_ 18 RILLLGLDNAGKTTLLKQLAS 38 (176)
T ss_dssp EEEEEESTTSSHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 689999999999999998865
|
| >d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]
Probab=91.57 E-value=0.042 Score=54.00 Aligned_cols=24 Identities=38% Similarity=0.639 Sum_probs=21.8
Q ss_pred CEEEEEcCCCCCHHHHHHHHhccc
Q 000984 1072 KTVALVGESGSGKSTVVSLLQRFY 1095 (1198)
Q Consensus 1072 ekvaIVG~SGSGKSTL~~lL~R~y 1095 (1198)
=++.|+|+.||||||+.+.|..-|
T Consensus 7 mrIiliG~PGSGKtT~a~~La~~~ 30 (189)
T d2ak3a1 7 LRAAIMGAPGSGKGTVSSRITKHF 30 (189)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHB
T ss_pred eeEEEECCCCCCHHHHHHHHHHHH
Confidence 378999999999999999998866
|
| >d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein Sec4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.54 E-value=0.039 Score=52.79 Aligned_cols=21 Identities=33% Similarity=0.620 Sum_probs=18.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 000984 1073 TVALVGESGSGKSTVVSLLQR 1093 (1198)
Q Consensus 1073 kvaIVG~SGSGKSTL~~lL~R 1093 (1198)
||.+||.+|+|||||++.+..
T Consensus 4 Ki~vvG~~~vGKTSli~~l~~ 24 (166)
T d1g16a_ 4 KILLIGDSGVGKSCLLVRFVE 24 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 689999999999999997763
|
| >d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab7 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=91.44 E-value=0.042 Score=53.57 Aligned_cols=21 Identities=24% Similarity=0.531 Sum_probs=19.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 000984 414 TAALVGQSGSGKSTVISLIER 434 (1198)
Q Consensus 414 ~~~ivG~~GsGKStl~~~l~g 434 (1198)
+++++|.+|||||||++.+.+
T Consensus 4 Kv~vvG~~~vGKSSLi~~l~~ 24 (184)
T d1vg8a_ 4 KVIILGDSGVGKTSLMNQYVN 24 (184)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 589999999999999988774
|
| >d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein GEM species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.43 E-value=0.063 Score=51.69 Aligned_cols=22 Identities=41% Similarity=0.718 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcc
Q 000984 1073 TVALVGESGSGKSTVVSLLQRF 1094 (1198)
Q Consensus 1073 kvaIVG~SGSGKSTL~~lL~R~ 1094 (1198)
||.+||.+|+|||||++.+.+-
T Consensus 5 Kv~lvG~~~vGKTsLi~~~~~~ 26 (172)
T d2g3ya1 5 RVVLIGEQGVGKSTLANIFAGV 26 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 6899999999999999988653
|
| >d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: cH-p21 Ras protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.42 E-value=0.041 Score=52.70 Aligned_cols=21 Identities=29% Similarity=0.455 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 000984 414 TAALVGQSGSGKSTVISLIER 434 (1198)
Q Consensus 414 ~~~ivG~~GsGKStl~~~l~g 434 (1198)
+++++|++|+|||||++.+.+
T Consensus 5 Ki~viG~~~vGKTsli~~l~~ 25 (166)
T d1ctqa_ 5 KLVVVGAGGVGKSALTIQLIQ 25 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 589999999999999998875
|
| >d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Centaurin gamma 1, G domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.42 E-value=0.057 Score=52.28 Aligned_cols=21 Identities=24% Similarity=0.532 Sum_probs=18.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 000984 1073 TVALVGESGSGKSTVVSLLQR 1093 (1198)
Q Consensus 1073 kvaIVG~SGSGKSTL~~lL~R 1093 (1198)
|++++|.+|+|||||++-+..
T Consensus 7 ki~vlG~~~vGKTsLi~~~~~ 27 (175)
T d2bmja1 7 RLGVLGDARSGKSSLIHRFLT 27 (175)
T ss_dssp EEEEECCTTTTHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 799999999999999986644
|
| >d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=91.40 E-value=0.045 Score=56.93 Aligned_cols=115 Identities=14% Similarity=0.204 Sum_probs=60.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhcccCC--CCCeEEECCcccCCCChHHHHhhcceeccccccccccHHHHHh--cCCC----
Q 000984 1073 TVALVGESGSGKSTVVSLLQRFYDP--DAGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIA--YGKG---- 1144 (1198)
Q Consensus 1073 kvaIVG~SGSGKSTL~~lL~R~ydp--~~G~I~IDG~dI~~i~l~~LR~~IsiV~Qdp~LF~gTIreNI~--~g~~---- 1144 (1198)
.|||||+.|||||||+..|+-.-.. ..|++. ||.-+.+...++..+++++-..-..+--..-+-||. +|..
T Consensus 8 ni~i~gh~~~GKTtL~e~ll~~~g~~~~~g~v~-~~~~~~D~~~~E~~r~~si~~~~~~~~~~~~~~n~iDtPG~~dF~~ 86 (276)
T d2bv3a2 8 NIGIAAHIDAGKTTTTERILYYTGRIHKIGEVH-EGAATMDFMEQERERGITITAAVTTCFWKDHRINIIDAPGHVDFTI 86 (276)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHTSSCC--------------------CCCCCCCSEEEEEETTEEEEEECCCSSSSCST
T ss_pred EEEEEeCCCCCHHHHHHHHHHhcCcccccccee-cCceEEeccHHHHhcCCccccceeeeccCCeEEEEecCCchhhhHH
Confidence 5899999999999999988632221 235553 566677777778777777755433322122222332 2210
Q ss_pred ---------------------CCCCHHHHHHHHH----------------HcchHHHHHhccccccceeeeeeccccccC
Q 000984 1145 ---------------------GDATEAEIQAASE----------------MANAHKFICSLQQVRTSRLLLVMIPWLESE 1187 (1198)
Q Consensus 1145 ---------------------~~~tdeei~~Al~----------------~A~l~dfI~~LP~g~dt~v~~~~~~~~~~~ 1187 (1198)
-++.-+.+|+.|+ .|+..+.++.+-+.+...++.+-+|+-+.+
T Consensus 87 e~~~~l~~~D~avlVvda~~Gv~~~T~~~w~~a~~~~lP~i~fINKmDr~~ad~~~~l~ei~~~l~~~~vp~~~Pig~~~ 166 (276)
T d2bv3a2 87 EVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKYKVPRIAFANKMDKTGADLWLVIRTMQERLGARPVVMQLPIGRED 166 (276)
T ss_dssp THHHHHHHCCEEEEEEETTTSSCHHHHHHHHHHHTTTCCEEEEEECTTSTTCCHHHHHHHHHHTTCCCEEECEEEESCGG
T ss_pred HHHHHHHhhhheEEeccccCCcchhHHHHHHHHHHcCCCEEEEEecccccccccchhHHHHHHHhCCCeEEEEecccCCC
Confidence 0112356788776 455578888888999999999999986544
Q ss_pred C
Q 000984 1188 D 1188 (1198)
Q Consensus 1188 ~ 1188 (1198)
+
T Consensus 167 ~ 167 (276)
T d2bv3a2 167 T 167 (276)
T ss_dssp G
T ss_pred c
Confidence 3
|
| >d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Lactobacillus casei [TaxId: 1582]
Probab=91.40 E-value=0.066 Score=51.46 Aligned_cols=33 Identities=27% Similarity=0.402 Sum_probs=25.0
Q ss_pred cccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhc
Q 000984 401 IFSGFSISISSGTTAALVGQSGSGKSTVISLIER 434 (1198)
Q Consensus 401 ~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g 434 (1198)
.++.--+.+ .|.=+.|+|+||+||||+...|..
T Consensus 4 ~lH~~~v~~-~g~gvl~~G~sG~GKStlal~l~~ 36 (176)
T d1kkma_ 4 SMHGVLVDI-YGLGVLITGDSGVGKSETALELVQ 36 (176)
T ss_dssp EEEEEEEEE-TTEEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHH
Confidence 444444433 588899999999999999977664
|
| >d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.36 E-value=0.047 Score=54.59 Aligned_cols=28 Identities=25% Similarity=0.208 Sum_probs=24.5
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHhccCC
Q 000984 410 SSGTTAALVGQSGSGKSTVISLIERFYD 437 (1198)
Q Consensus 410 ~~g~~~~ivG~~GsGKStl~~~l~g~~~ 437 (1198)
++|-+++|.|+-||||||+.+.|...+.
T Consensus 1 ~rG~lI~ieG~dGsGKsT~~~~L~~~L~ 28 (209)
T d1nn5a_ 1 RRGALIVLEGVDRAGKSTQSRKLVEALC 28 (209)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCeeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4789999999999999999999877553
|
| >d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab11b species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.35 E-value=0.044 Score=53.01 Aligned_cols=21 Identities=43% Similarity=0.721 Sum_probs=19.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 000984 414 TAALVGQSGSGKSTVISLIER 434 (1198)
Q Consensus 414 ~~~ivG~~GsGKStl~~~l~g 434 (1198)
+++++|+.|+|||||++.+.+
T Consensus 6 Ki~vvG~~~vGKTsLi~~~~~ 26 (175)
T d2f9la1 6 KVVLIGDSGVGKSNLLSRFTR 26 (175)
T ss_dssp EEEEESSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 589999999999999998765
|
| >d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab9a species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.35 E-value=0.051 Score=52.42 Aligned_cols=21 Identities=33% Similarity=0.599 Sum_probs=18.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 000984 1073 TVALVGESGSGKSTVVSLLQR 1093 (1198)
Q Consensus 1073 kvaIVG~SGSGKSTL~~lL~R 1093 (1198)
||.+||++|+|||||++-+.+
T Consensus 8 KI~vvG~~~vGKSSli~~~~~ 28 (174)
T d1wmsa_ 8 KVILLGDGGVGKSSLMNRYVT 28 (174)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 499999999999999987754
|
| >d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit species: Streptococcus pyogenes [TaxId: 1314]
Probab=91.32 E-value=0.046 Score=56.79 Aligned_cols=37 Identities=24% Similarity=0.351 Sum_probs=29.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCC
Q 000984 1073 TVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQK 1111 (1198)
Q Consensus 1073 kvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~~ 1111 (1198)
-+-++||+||||||+++.|++-+. .+-+.|++-++++
T Consensus 34 ~ilL~GpPGtGKT~la~~la~~~~--~~~~~i~~d~~~~ 70 (273)
T d1gvnb_ 34 AFLLGGQPGSGKTSLRSAIFEETQ--GNVIVIDNDTFKQ 70 (273)
T ss_dssp EEEEECCTTSCTHHHHHHHHHHTT--TCCEEECTHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhh--cceEEEecHHHHH
Confidence 478999999999999999999775 3467777655443
|
| >d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Archaeon Acidianus ambivalens [TaxId: 2283]
Probab=91.28 E-value=0.037 Score=55.22 Aligned_cols=39 Identities=31% Similarity=0.510 Sum_probs=21.8
Q ss_pred CCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCccc
Q 000984 1071 GKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEI 1109 (1198)
Q Consensus 1071 GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI 1109 (1198)
-..+++|||||+||||.+.=|...+.-...+|-+=..|.
T Consensus 12 p~vi~lvGptGvGKTTTiAKLA~~~~~~g~kV~lit~Dt 50 (211)
T d1j8yf2 12 PYVIMLVGVQGTGKATTAGKLAYFYKKKGFKVGLVGADV 50 (211)
T ss_dssp SEEEEEECSCCC----HHHHHHHHHHHTTCCEEEEECCC
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHCCCceEEEEeec
Confidence 356999999999998876555555553334554433343
|
| >d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab2b species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.27 E-value=0.046 Score=52.72 Aligned_cols=20 Identities=25% Similarity=0.566 Sum_probs=18.4
Q ss_pred EEEEEcCCCCCHHHHHHHHh
Q 000984 1073 TVALVGESGSGKSTVVSLLQ 1092 (1198)
Q Consensus 1073 kvaIVG~SGSGKSTL~~lL~ 1092 (1198)
||.+||.+|+|||||++-+.
T Consensus 5 KivvvG~~~vGKTsli~r~~ 24 (173)
T d2a5ja1 5 KYIIIGDTGVGKSCLLLQFT 24 (173)
T ss_dssp EEEEESSTTSSHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHh
Confidence 68999999999999999776
|
| >d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Staphylococcus xylosus [TaxId: 1288]
Probab=91.27 E-value=0.061 Score=51.45 Aligned_cols=32 Identities=31% Similarity=0.333 Sum_probs=24.1
Q ss_pred cccceEEeeCCCEEEEEcCCCCCHHHHHHHHhc
Q 000984 1061 FRDLNLKIRAGKTVALVGESGSGKSTVVSLLQR 1093 (1198)
Q Consensus 1061 L~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R 1093 (1198)
|+. ++-.-.|.=|.|+|+||+||||++..|.+
T Consensus 6 ~H~-~~v~~~g~gvli~G~sg~GKS~la~~l~~ 37 (169)
T d1ko7a2 6 LHG-VLVDVYGVGVLITGDSGIGKSETALELIK 37 (169)
T ss_dssp EES-EEEEETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred EEE-EEEEECCEEEEEEeCCCCCHHHHHHHHHH
Confidence 344 33445688899999999999999966553
|
| >d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.26 E-value=0.051 Score=55.37 Aligned_cols=26 Identities=31% Similarity=0.478 Sum_probs=23.2
Q ss_pred EeeCCCEEEEEcCCCCCHHHHHHHHh
Q 000984 1067 KIRAGKTVALVGESGSGKSTVVSLLQ 1092 (1198)
Q Consensus 1067 ~I~~GekvaIVG~SGSGKSTL~~lL~ 1092 (1198)
=+++|+.+-|.|++||||||++.-+.
T Consensus 30 Gi~~G~~~li~G~pGsGKT~l~lq~~ 55 (251)
T d1szpa2 30 GVETGSITELFGEFRTGKSQLCHTLA 55 (251)
T ss_dssp SEESSSEEEEEESTTSSHHHHHHHHT
T ss_pred CCcCCeEEEEEcCCCCCHHHHHHHHH
Confidence 48999999999999999999996553
|
| >d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap2a species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.25 E-value=0.046 Score=52.30 Aligned_cols=21 Identities=24% Similarity=0.427 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 000984 414 TAALVGQSGSGKSTVISLIER 434 (1198)
Q Consensus 414 ~~~ivG~~GsGKStl~~~l~g 434 (1198)
+++++|++|+|||||++.+.+
T Consensus 5 Ki~lvG~~~vGKTsLi~r~~~ 25 (167)
T d1kaoa_ 5 KVVVLGSGGVGKSALTVQFVT 25 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 689999999999999988875
|
| >d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL8A [TaxId: 9606]
Probab=91.19 E-value=0.047 Score=52.12 Aligned_cols=21 Identities=38% Similarity=0.534 Sum_probs=18.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 000984 414 TAALVGQSGSGKSTVISLIER 434 (1198)
Q Consensus 414 ~~~ivG~~GsGKStl~~~l~g 434 (1198)
+++++|++|+|||||++.+.+
T Consensus 4 ki~i~G~~~~GKTsLl~~l~~ 24 (164)
T d1zd9a1 4 ELTLVGLQYSGKTTFVNVIAS 24 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 578999999999999998764
|
| >d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.18 E-value=0.062 Score=51.15 Aligned_cols=21 Identities=19% Similarity=0.411 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 000984 414 TAALVGQSGSGKSTVISLIER 434 (1198)
Q Consensus 414 ~~~ivG~~GsGKStl~~~l~g 434 (1198)
+++++|..|+|||||++.+.+
T Consensus 2 Kv~vvG~~~vGKTsLi~r~~~ 22 (164)
T d1yzqa1 2 KLVFLGEQSVGKTSLITRFMY 22 (164)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 689999999999999998875
|
| >d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab2b species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.16 E-value=0.047 Score=52.66 Aligned_cols=21 Identities=24% Similarity=0.487 Sum_probs=18.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 000984 414 TAALVGQSGSGKSTVISLIER 434 (1198)
Q Consensus 414 ~~~ivG~~GsGKStl~~~l~g 434 (1198)
++++||++|||||||++.+.+
T Consensus 5 KivvvG~~~vGKTsli~r~~~ 25 (173)
T d2a5ja1 5 KYIIIGDTGVGKSCLLLQFTD 25 (173)
T ss_dssp EEEEESSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHhc
Confidence 589999999999999998774
|
| >d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor IF2/eIF5b, N-terminal (G) domain species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=91.16 E-value=0.046 Score=55.46 Aligned_cols=22 Identities=23% Similarity=0.454 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhcc
Q 000984 1073 TVALVGESGSGKSTVVSLLQRF 1094 (1198)
Q Consensus 1073 kvaIVG~SGSGKSTL~~lL~R~ 1094 (1198)
.|||+|+..||||||++.|++-
T Consensus 7 ~IaIiGh~d~GKSTL~~~L~~~ 28 (227)
T d1g7sa4 7 IVSVLGHVDHGKTTLLDHIRGS 28 (227)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEeCCCccHHHHHHHHHhh
Confidence 3999999999999999999864
|
| >d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=91.16 E-value=0.036 Score=59.21 Aligned_cols=34 Identities=12% Similarity=0.365 Sum_probs=25.5
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECC
Q 000984 412 GTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDG 447 (1198)
Q Consensus 412 g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g 447 (1198)
+.-+.++||+|||||.|.++|.+.+.. --+.+|+
T Consensus 49 ~~~iLl~GPpG~GKT~lAkalA~~~~~--~~~~i~~ 82 (309)
T d1ofha_ 49 PKNILMIGPTGVGKTEIARRLAKLANA--PFIKVEA 82 (309)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHHTC--CEEEEEG
T ss_pred CceEEEECCCCCCHHHHHHHHhhcccc--chhcccc
Confidence 345678999999999999999997632 2445544
|
| >d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-33b species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.15 E-value=0.049 Score=51.92 Aligned_cols=21 Identities=19% Similarity=0.409 Sum_probs=18.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 000984 1073 TVALVGESGSGKSTVVSLLQR 1093 (1198)
Q Consensus 1073 kvaIVG~SGSGKSTL~~lL~R 1093 (1198)
||.+||.+|+|||||++-+..
T Consensus 4 Kv~liG~~~vGKTsLl~~~~~ 24 (165)
T d1z06a1 4 KIIVIGDSNVGKTCLTYRFCA 24 (165)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 689999999999999987753
|
| >d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Escherichia coli [TaxId: 562]
Probab=91.12 E-value=0.052 Score=54.23 Aligned_cols=27 Identities=19% Similarity=0.345 Sum_probs=24.1
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhccCC
Q 000984 411 SGTTAALVGQSGSGKSTVISLIERFYD 437 (1198)
Q Consensus 411 ~g~~~~ivG~~GsGKStl~~~l~g~~~ 437 (1198)
+|.+++|-|+-||||||+++.|...+.
T Consensus 1 rgkfIviEG~dGsGKsT~~~~L~~~L~ 27 (210)
T d4tmka_ 1 RSKYIVIEGLEGAGKTTARNVVVETLE 27 (210)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 589999999999999999999987553
|
| >d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.07 E-value=0.046 Score=52.57 Aligned_cols=21 Identities=29% Similarity=0.662 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 000984 1073 TVALVGESGSGKSTVVSLLQR 1093 (1198)
Q Consensus 1073 kvaIVG~SGSGKSTL~~lL~R 1093 (1198)
||.|||.+|+|||||++-+..
T Consensus 7 Ki~lvG~~~vGKTsLi~~l~~ 27 (171)
T d2ew1a1 7 KIVLIGNAGVGKTCLVRRFTQ 27 (171)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 699999999999999998774
|
| >d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Escherichia coli [TaxId: 562]
Probab=91.01 E-value=0.05 Score=54.62 Aligned_cols=23 Identities=26% Similarity=0.420 Sum_probs=21.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhccC
Q 000984 414 TAALVGQSGSGKSTVISLIERFY 436 (1198)
Q Consensus 414 ~~~ivG~~GsGKStl~~~l~g~~ 436 (1198)
+++|-||+||||||+.+.|..-|
T Consensus 5 iI~I~GppGSGKgT~ak~La~~~ 27 (225)
T d1ckea_ 5 VITIDGPSGAGKGTLCKAMAEAL 27 (225)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 78999999999999999999766
|
| >d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]
Probab=91.00 E-value=0.036 Score=53.96 Aligned_cols=21 Identities=33% Similarity=0.596 Sum_probs=18.8
Q ss_pred CEEEEEcCCCCCHHHHHHHHh
Q 000984 1072 KTVALVGESGSGKSTVVSLLQ 1092 (1198)
Q Consensus 1072 ekvaIVG~SGSGKSTL~~lL~ 1092 (1198)
=||.+||++|+|||||++-|.
T Consensus 18 ~KI~lvG~~~vGKTsLi~~l~ 38 (182)
T d1moza_ 18 LRILILGLDGAGKTTILYRLQ 38 (182)
T ss_dssp EEEEEEEETTSSHHHHHHHTC
T ss_pred EEEEEECCCCCCHHHHHHHHh
Confidence 379999999999999999875
|
| >d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-22a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=90.99 E-value=0.052 Score=51.95 Aligned_cols=20 Identities=35% Similarity=0.657 Sum_probs=18.5
Q ss_pred EEEEEcCCCCCHHHHHHHHh
Q 000984 1073 TVALVGESGSGKSTVVSLLQ 1092 (1198)
Q Consensus 1073 kvaIVG~SGSGKSTL~~lL~ 1092 (1198)
||+|||.+|+|||||++-|.
T Consensus 6 Ki~lvG~~~vGKTsli~rl~ 25 (167)
T d1z0ja1 6 KVCLLGDTGVGKSSIMWRFV 25 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHH
Confidence 69999999999999998876
|
| >d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Escherichia coli [TaxId: 562]
Probab=90.99 E-value=0.053 Score=54.14 Aligned_cols=27 Identities=22% Similarity=0.405 Sum_probs=23.9
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHhcccC
Q 000984 1070 AGKTVALVGESGSGKSTVVSLLQRFYD 1096 (1198)
Q Consensus 1070 ~GekvaIVG~SGSGKSTL~~lL~R~yd 1096 (1198)
.|..|+|-|+-||||||++++|...++
T Consensus 1 rgkfIviEG~dGsGKsT~~~~L~~~L~ 27 (210)
T d4tmka_ 1 RSKYIVIEGLEGAGKTTARNVVVETLE 27 (210)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 488999999999999999999987553
|
| >d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]
Probab=90.98 E-value=0.053 Score=53.28 Aligned_cols=24 Identities=46% Similarity=0.684 Sum_probs=21.5
Q ss_pred CEEEEEcCCCCcHHHHHHHHhccC
Q 000984 413 TTAALVGQSGSGKSTVISLIERFY 436 (1198)
Q Consensus 413 ~~~~ivG~~GsGKStl~~~l~g~~ 436 (1198)
=.+.|+||.||||||+.+.|.--|
T Consensus 7 mrIiliG~PGSGKtT~a~~La~~~ 30 (189)
T d2ak3a1 7 LRAAIMGAPGSGKGTVSSRITKHF 30 (189)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHB
T ss_pred eeEEEECCCCCCHHHHHHHHHHHH
Confidence 368899999999999999999866
|
| >d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.98 E-value=0.053 Score=52.71 Aligned_cols=30 Identities=30% Similarity=0.443 Sum_probs=24.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECC
Q 000984 1073 TVALVGESGSGKSTVVSLLQRFYDPDAGHITLDG 1106 (1198)
Q Consensus 1073 kvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG 1106 (1198)
++.|.|+.||||||+++.|.--| |-+.|+.
T Consensus 4 rIvl~G~pGSGKtT~a~~La~~~----g~~~i~~ 33 (180)
T d1akya1 4 RMVLIGPPGAGKGTQAPNLQERF----HAAHLAT 33 (180)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH----CCEEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh----CCceEec
Confidence 57899999999999999998766 4555554
|
| >d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=90.96 E-value=0.034 Score=55.46 Aligned_cols=22 Identities=27% Similarity=0.454 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcc
Q 000984 1073 TVALVGESGSGKSTVVSLLQRF 1094 (1198)
Q Consensus 1073 kvaIVG~SGSGKSTL~~lL~R~ 1094 (1198)
.|||+|+.+||||||+..|+..
T Consensus 5 ni~iiGhvd~GKSTL~~~Ll~~ 26 (204)
T d2c78a3 5 NVGTIGHVDHGKTTLTAALTYV 26 (204)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEeCCCCcHHHHHHHHHHH
Confidence 4899999999999999999743
|
| >d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Thermus aquaticus [TaxId: 271]
Probab=90.94 E-value=0.68 Score=45.47 Aligned_cols=25 Identities=36% Similarity=0.523 Sum_probs=20.6
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhccC
Q 000984 412 GTTAALVGQSGSGKSTVISLIERFY 436 (1198)
Q Consensus 412 g~~~~ivG~~GsGKStl~~~l~g~~ 436 (1198)
+..++++||+|+||||.+.-|...+
T Consensus 10 ~~vi~lvGp~GvGKTTTiaKLA~~~ 34 (207)
T d1ls1a2 10 RNLWFLVGLQGSGKTTTAAKLALYY 34 (207)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 4578999999999999887777654
|
| >d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rac species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.93 E-value=0.053 Score=52.83 Aligned_cols=20 Identities=20% Similarity=0.420 Sum_probs=18.3
Q ss_pred EEEEEcCCCCCHHHHHHHHh
Q 000984 1073 TVALVGESGSGKSTVVSLLQ 1092 (1198)
Q Consensus 1073 kvaIVG~SGSGKSTL~~lL~ 1092 (1198)
||+|||.+|+|||||++-+.
T Consensus 7 KivviG~~~vGKTsli~~~~ 26 (183)
T d1mh1a_ 7 KCVVVGDGAVGKTCLLISYT 26 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 79999999999999997665
|
| >d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.93 E-value=0.052 Score=55.80 Aligned_cols=25 Identities=32% Similarity=0.458 Sum_probs=22.2
Q ss_pred CEEEEEcCCCCcHHHHHHHHhccCC
Q 000984 413 TTAALVGQSGSGKSTVISLIERFYD 437 (1198)
Q Consensus 413 ~~~~ivG~~GsGKStl~~~l~g~~~ 437 (1198)
..+.+.||+|+||||++++|++.+.
T Consensus 53 ~~lll~GPpG~GKTt~a~~la~~~~ 77 (253)
T d1sxja2 53 RAAMLYGPPGIGKTTAAHLVAQELG 77 (253)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHH
Confidence 3578999999999999999999764
|
| >d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.85 E-value=0.055 Score=52.56 Aligned_cols=29 Identities=21% Similarity=0.400 Sum_probs=23.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhccCCCCCCeEEEC
Q 000984 414 TAALVGQSGSGKSTVISLIERFYDPQAGEVLID 446 (1198)
Q Consensus 414 ~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~ 446 (1198)
++.|+||.||||||+.+.|.-.+ |-+.++
T Consensus 4 rIvl~G~pGSGKtT~a~~La~~~----g~~~i~ 32 (180)
T d1akya1 4 RMVLIGPPGAGKGTQAPNLQERF----HAAHLA 32 (180)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH----CCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHh----CCceEe
Confidence 47789999999999999998766 545444
|
| >d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=90.81 E-value=0.062 Score=54.34 Aligned_cols=25 Identities=24% Similarity=0.395 Sum_probs=22.2
Q ss_pred EeCCCEEEEEcCCCCcHHHHHHHHh
Q 000984 409 ISSGTTAALVGQSGSGKSTVISLIE 433 (1198)
Q Consensus 409 i~~g~~~~ivG~~GsGKStl~~~l~ 433 (1198)
+++|+.+.|.|++|+|||+|+.-++
T Consensus 23 i~~G~~~~I~G~~G~GKT~la~~~~ 47 (242)
T d1tf7a1 23 LPIGRSTLVSGTSGTGKTLFSIQFL 47 (242)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHH
T ss_pred CcCCeEEEEEeCCCCCHHHHHHHHH
Confidence 8899999999999999999985443
|
| >d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rad species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.79 E-value=0.058 Score=51.72 Aligned_cols=23 Identities=26% Similarity=0.436 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhccC
Q 000984 414 TAALVGQSGSGKSTVISLIERFY 436 (1198)
Q Consensus 414 ~~~ivG~~GsGKStl~~~l~g~~ 436 (1198)
+++++|.+|+|||||++.+.+..
T Consensus 3 Ki~lvG~~~vGKTsLi~~~~~~~ 25 (168)
T d2gjsa1 3 KVLLLGAPGVGKSALARIFGGVE 25 (168)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC-
T ss_pred EEEEECCCCcCHHHHHHHHhCCc
Confidence 58999999999999999988753
|
| >d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab27b species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.77 E-value=0.057 Score=52.65 Aligned_cols=21 Identities=29% Similarity=0.400 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 000984 414 TAALVGQSGSGKSTVISLIER 434 (1198)
Q Consensus 414 ~~~ivG~~GsGKStl~~~l~g 434 (1198)
+++|+|+.|+|||||++.+.+
T Consensus 7 Ki~ivG~~~vGKTsLi~~l~~ 27 (186)
T d2f7sa1 7 KLLALGDSGVGKTTFLYRYTD 27 (186)
T ss_dssp EEEEESCTTSSHHHHHHHHHC
T ss_pred EEEEECCCCcCHHHHHHHHhc
Confidence 489999999999999998875
|
| >d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein Sec4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.72 E-value=0.052 Score=51.87 Aligned_cols=22 Identities=32% Similarity=0.431 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcc
Q 000984 414 TAALVGQSGSGKSTVISLIERF 435 (1198)
Q Consensus 414 ~~~ivG~~GsGKStl~~~l~g~ 435 (1198)
+++++|++|+|||||++.+.+.
T Consensus 4 Ki~vvG~~~vGKTSli~~l~~~ 25 (166)
T d1g16a_ 4 KILLIGDSGVGKSCLLVRFVED 25 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 5899999999999999987753
|
| >d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=90.70 E-value=0.057 Score=55.36 Aligned_cols=25 Identities=24% Similarity=0.469 Sum_probs=22.5
Q ss_pred EeCCCEEEEEcCCCCcHHHHHHHHh
Q 000984 409 ISSGTTAALVGQSGSGKSTVISLIE 433 (1198)
Q Consensus 409 i~~g~~~~ivG~~GsGKStl~~~l~ 433 (1198)
+++|+.+.|.||+|||||||..-++
T Consensus 33 lp~G~~~li~G~pGsGKT~~~lq~~ 57 (254)
T d1pzna2 33 IETQAITEVFGEFGSGKTQLAHTLA 57 (254)
T ss_dssp EESSEEEEEEESTTSSHHHHHHHHH
T ss_pred ccCCEEEEEEcCCCCCHHHHHHHHH
Confidence 7899999999999999999986554
|
| >d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Meiotic recombination protein DMC1/LIM15 homolog species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.70 E-value=0.055 Score=55.47 Aligned_cols=26 Identities=19% Similarity=0.207 Sum_probs=23.9
Q ss_pred EeCCCEEEEEcCCCCcHHHHHHHHhc
Q 000984 409 ISSGTTAALVGQSGSGKSTVISLIER 434 (1198)
Q Consensus 409 i~~g~~~~ivG~~GsGKStl~~~l~g 434 (1198)
+++|+.+.|.|++|||||+|...++-
T Consensus 34 ip~G~~~~i~G~~GsGKT~lalq~~~ 59 (258)
T d1v5wa_ 34 IESMAITEAFGEFRTGKTQLSHTLCV 59 (258)
T ss_dssp BCSSEEEEEECCTTCTHHHHHHHHHH
T ss_pred CcCCEEEEEECCCCCCHHHHHHHHHH
Confidence 78999999999999999999987764
|
| >d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermotoga maritima [TaxId: 2336]
Probab=90.65 E-value=0.047 Score=55.71 Aligned_cols=26 Identities=27% Similarity=0.424 Sum_probs=22.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhccCCCC
Q 000984 414 TAALVGQSGSGKSTVISLIERFYDPQ 439 (1198)
Q Consensus 414 ~~~ivG~~GsGKStl~~~l~g~~~~~ 439 (1198)
.+.+.||+|+||||++++|...+...
T Consensus 37 ~~L~~GPpGtGKT~lA~~la~~~~~~ 62 (238)
T d1in4a2 37 HVLLAGPPGLGKTTLAHIIASELQTN 62 (238)
T ss_dssp CEEEESSTTSSHHHHHHHHHHHHTCC
T ss_pred eEEEECCCCCcHHHHHHHHHhccCCC
Confidence 47899999999999999999987544
|
| >d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein RalA species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]
Probab=90.63 E-value=0.078 Score=50.78 Aligned_cols=21 Identities=29% Similarity=0.409 Sum_probs=19.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 000984 414 TAALVGQSGSGKSTVISLIER 434 (1198)
Q Consensus 414 ~~~ivG~~GsGKStl~~~l~g 434 (1198)
+++++|..|+|||||++.+..
T Consensus 6 KivlvG~~~vGKTsli~~~~~ 26 (168)
T d1u8za_ 6 KVIMVGSGGVGKSALTLQFMY 26 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 799999999999999998763
|
| >d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab14 species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.62 E-value=0.058 Score=51.53 Aligned_cols=21 Identities=24% Similarity=0.529 Sum_probs=18.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 000984 1073 TVALVGESGSGKSTVVSLLQR 1093 (1198)
Q Consensus 1073 kvaIVG~SGSGKSTL~~lL~R 1093 (1198)
||.|||.+|+|||||++-+..
T Consensus 6 KivlvG~~~vGKTsli~~~~~ 26 (166)
T d1z0fa1 6 KYIIIGDMGVGKSCLLHQFTE 26 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 589999999999999987763
|
| >d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor IF2/eIF5b, N-terminal (G) domain species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=90.59 E-value=0.055 Score=54.87 Aligned_cols=22 Identities=23% Similarity=0.433 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcc
Q 000984 414 TAALVGQSGSGKSTVISLIERF 435 (1198)
Q Consensus 414 ~~~ivG~~GsGKStl~~~l~g~ 435 (1198)
.+||+|++.||||||++.|++.
T Consensus 7 ~IaIiGh~d~GKSTL~~~L~~~ 28 (227)
T d1g7sa4 7 IVSVLGHVDHGKTTLLDHIRGS 28 (227)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEeCCCccHHHHHHHHHhh
Confidence 4999999999999999999874
|
| >d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Escherichia coli [TaxId: 562]
Probab=90.58 E-value=0.1 Score=53.72 Aligned_cols=58 Identities=17% Similarity=0.274 Sum_probs=40.3
Q ss_pred eeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCC----ChHHHHhhcceeccc
Q 000984 1068 IRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKL----QLKWLRQQMGLVSQE 1127 (1198)
Q Consensus 1068 I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~~i----~l~~LR~~IsiV~Qd 1127 (1198)
+++...+-+.||+|+|||++++.|.+-+... -+.+++-++.+- +...+|+-+....|.
T Consensus 42 ~~~~~~iLL~GppGtGKT~la~~iA~~~~~~--~~~i~~~~l~~~~~g~~~~~l~~~f~~A~~~ 103 (256)
T d1lv7a_ 42 GKIPKGVLMVGPPGTGKTLLAKAIAGEAKVP--FFTISGSDFVEMFVGVGASRVRDMFEQAKKA 103 (256)
T ss_dssp -CCCCEEEEECCTTSCHHHHHHHHHHHHTCC--EEEECSCSSTTSCCCCCHHHHHHHHHHHHTT
T ss_pred CCCCCeEEeeCCCCCCccHHHHHHHHHcCCC--EEEEEhHHhhhcchhHHHHHHHHHHHHHHHc
Confidence 3444568899999999999999999987643 577888776542 234566655444443
|
| >d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Transcription termination factor Rho, ATPase domain species: Escherichia coli [TaxId: 562]
Probab=90.57 E-value=0.053 Score=56.45 Aligned_cols=33 Identities=18% Similarity=0.256 Sum_probs=28.9
Q ss_pred ceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccC
Q 000984 1064 LNLKIRAGKTVALVGESGSGKSTVVSLLQRFYD 1096 (1198)
Q Consensus 1064 is~~I~~GekvaIVG~SGSGKSTL~~lL~R~yd 1096 (1198)
.=+.|-.||+++|+|++|+|||||+.-+.+-..
T Consensus 36 ~l~PigrGQr~~I~g~~g~GKT~l~~~i~~~~~ 68 (289)
T d1xpua3 36 LASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIA 68 (289)
T ss_dssp HHSCCBTTCEEEEEECSSSSHHHHHHHHHHHHH
T ss_pred ecccccCCCeeeEeCCCCCCHHHHHHHHHHHHh
Confidence 336788999999999999999999999998554
|
| >d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CED-4, NB-ARC domain species: Caenorhabditis elegans [TaxId: 6239]
Probab=90.55 E-value=0.73 Score=47.61 Aligned_cols=25 Identities=32% Similarity=0.247 Sum_probs=21.7
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhccC
Q 000984 412 GTTAALVGQSGSGKSTVISLIERFY 436 (1198)
Q Consensus 412 g~~~~ivG~~GsGKStl~~~l~g~~ 436 (1198)
...++|+|..|.|||||++.+....
T Consensus 44 ~~~v~I~GmgGiGKTtLA~~v~~~~ 68 (277)
T d2a5yb3 44 SFFLFLHGRAGSGKSVIASQALSKS 68 (277)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhh
Confidence 4589999999999999999987643
|
| >d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.51 E-value=0.055 Score=51.98 Aligned_cols=21 Identities=24% Similarity=0.575 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 000984 414 TAALVGQSGSGKSTVISLIER 434 (1198)
Q Consensus 414 ~~~ivG~~GsGKStl~~~l~g 434 (1198)
+++|+|+.|+|||||++.+.+
T Consensus 7 Ki~lvG~~~vGKTsLi~~l~~ 27 (171)
T d2ew1a1 7 KIVLIGNAGVGKTCLVRRFTQ 27 (171)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 589999999999999998875
|
| >d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab8a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=90.48 E-value=0.042 Score=53.05 Aligned_cols=21 Identities=33% Similarity=0.612 Sum_probs=9.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 000984 1073 TVALVGESGSGKSTVVSLLQR 1093 (1198)
Q Consensus 1073 kvaIVG~SGSGKSTL~~lL~R 1093 (1198)
||.+||.+|+|||||++.|.+
T Consensus 8 Ki~vvG~~~vGKTsLi~~l~~ 28 (173)
T d2fu5c1 8 KLLLIGDSGVGKTCVLFRFSE 28 (173)
T ss_dssp EEEEECCCCC-----------
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 699999999999999986654
|
| >d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Escherichia coli [TaxId: 562]
Probab=90.46 E-value=0.06 Score=53.75 Aligned_cols=20 Identities=50% Similarity=0.606 Sum_probs=18.5
Q ss_pred EEEEEcCCCCcHHHHHHHHh
Q 000984 414 TAALVGQSGSGKSTVISLIE 433 (1198)
Q Consensus 414 ~~~ivG~~GsGKStl~~~l~ 433 (1198)
++||+|..||||||..+.+.
T Consensus 5 iIgitG~igSGKStv~~~l~ 24 (208)
T d1vhta_ 5 IVALTGGIGSGKSTVANAFA 24 (208)
T ss_dssp EEEEECCTTSCHHHHHHHHH
T ss_pred EEEEECCCcCCHHHHHHHHH
Confidence 68999999999999999875
|
| >d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ran species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.44 E-value=0.046 Score=52.57 Aligned_cols=20 Identities=40% Similarity=0.649 Sum_probs=18.0
Q ss_pred EEEEEcCCCCCHHHHHHHHh
Q 000984 1073 TVALVGESGSGKSTVVSLLQ 1092 (1198)
Q Consensus 1073 kvaIVG~SGSGKSTL~~lL~ 1092 (1198)
||++||.+|+|||||++.+.
T Consensus 5 Ki~vvG~~~vGKTsli~~~~ 24 (170)
T d1i2ma_ 5 KLVLVGDGGTGKTTFVKRHL 24 (170)
T ss_dssp EEEEEECTTSSHHHHHHTTC
T ss_pred EEEEECCCCcCHHHHHHHHH
Confidence 79999999999999998664
|
| >d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.42 E-value=0.058 Score=51.97 Aligned_cols=21 Identities=29% Similarity=0.502 Sum_probs=18.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 000984 1073 TVALVGESGSGKSTVVSLLQR 1093 (1198)
Q Consensus 1073 kvaIVG~SGSGKSTL~~lL~R 1093 (1198)
||.|||.+|+|||||++-+..
T Consensus 8 Kv~lvG~~~vGKTsLi~r~~~ 28 (173)
T d2fn4a1 8 KLVVVGGGGVGKSALTIQFIQ 28 (173)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 799999999999999987653
|
| >d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.34 E-value=0.064 Score=53.79 Aligned_cols=27 Identities=26% Similarity=0.422 Sum_probs=24.5
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHhcccC
Q 000984 1070 AGKTVALVGESGSGKSTVVSLLQRFYD 1096 (1198)
Q Consensus 1070 ~GekvaIVG~SGSGKSTL~~lL~R~yd 1096 (1198)
+|..|+|-|.-||||||++++|....+
T Consensus 2 kGk~I~iEG~DGsGKST~~~~L~~~L~ 28 (214)
T d1tmka_ 2 RGKLILIEGLDRTGKTTQCNILYKKLQ 28 (214)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred CeEEEEEECCCCCcHHHHHHHHHHHHH
Confidence 689999999999999999999986665
|
| >d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Thermus aquaticus [TaxId: 271]
Probab=90.34 E-value=0.059 Score=53.55 Aligned_cols=26 Identities=38% Similarity=0.535 Sum_probs=20.4
Q ss_pred CCEEEEEcCCCCCHHHHHHHHhcccC
Q 000984 1071 GKTVALVGESGSGKSTVVSLLQRFYD 1096 (1198)
Q Consensus 1071 GekvaIVG~SGSGKSTL~~lL~R~yd 1096 (1198)
+..+.+|||+|+||||.+.=|...+.
T Consensus 10 ~~vi~lvGp~GvGKTTTiaKLA~~~~ 35 (207)
T d1ls1a2 10 RNLWFLVGLQGSGKTTTAAKLALYYK 35 (207)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 45689999999999987766665554
|
| >d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=90.33 E-value=0.064 Score=54.66 Aligned_cols=26 Identities=23% Similarity=0.358 Sum_probs=23.6
Q ss_pred EeCCCEEEEEcCCCCcHHHHHHHHhc
Q 000984 409 ISSGTTAALVGQSGSGKSTVISLIER 434 (1198)
Q Consensus 409 i~~g~~~~ivG~~GsGKStl~~~l~g 434 (1198)
+++|+++.|.|++|+|||||+.-++-
T Consensus 31 l~~G~l~~i~G~~G~GKT~~~l~~a~ 56 (258)
T d2i1qa2 31 LESQSVTEFAGVFGSGKTQIMHQSCV 56 (258)
T ss_dssp EETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred ccCCeEEEEEeCCCCCHHHHHHHHHH
Confidence 88999999999999999999877663
|
| >d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein GEM species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.30 E-value=0.085 Score=50.69 Aligned_cols=23 Identities=30% Similarity=0.556 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhccC
Q 000984 414 TAALVGQSGSGKSTVISLIERFY 436 (1198)
Q Consensus 414 ~~~ivG~~GsGKStl~~~l~g~~ 436 (1198)
+++++|..|+|||||++.+.+..
T Consensus 5 Kv~lvG~~~vGKTsLi~~~~~~~ 27 (172)
T d2g3ya1 5 RVVLIGEQGVGKSTLANIFAGVH 27 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCC
T ss_pred EEEEECCCCcCHHHHHHHHHhCc
Confidence 58999999999999999988754
|
| >d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Haemophilus influenzae [TaxId: 727]
Probab=90.23 E-value=0.05 Score=57.08 Aligned_cols=22 Identities=32% Similarity=0.454 Sum_probs=20.5
Q ss_pred CEEEEEcCCCCCHHHHHHHHhc
Q 000984 1072 KTVALVGESGSGKSTVVSLLQR 1093 (1198)
Q Consensus 1072 ekvaIVG~SGSGKSTL~~lL~R 1093 (1198)
=||||||-.-+|||||+++|.+
T Consensus 3 ~~~GivG~Pn~GKSTlf~~lt~ 24 (278)
T d1jala1 3 FKCGIVGLPNVGKSTLFNALTK 24 (278)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHC
Confidence 3899999999999999999986
|
| >d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: YjeE-like domain: Hypothetical protein HI0065 species: Haemophilus influenzae [TaxId: 727]
Probab=90.17 E-value=0.072 Score=50.16 Aligned_cols=31 Identities=23% Similarity=0.244 Sum_probs=27.8
Q ss_pred EeeCCCEEEEEcCCCCCHHHHHHHHhcccCC
Q 000984 1067 KIRAGKTVALVGESGSGKSTVVSLLQRFYDP 1097 (1198)
Q Consensus 1067 ~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp 1097 (1198)
..+||..|.+.|+=||||||+++.+.+-+-.
T Consensus 29 ~~~~g~ii~L~G~LGaGKTtfvr~~~~~lg~ 59 (158)
T d1htwa_ 29 HTEKAIMVYLNGDLGAGKTTLTRGMLQGIGH 59 (158)
T ss_dssp CCSSCEEEEEECSTTSSHHHHHHHHHHHTTC
T ss_pred cCCCCeEEEEecCCCccHHHHHHHHHhhccc
Confidence 4578999999999999999999999998754
|
| >d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Escherichia coli [TaxId: 562]
Probab=90.17 E-value=0.069 Score=55.26 Aligned_cols=54 Identities=19% Similarity=0.316 Sum_probs=39.7
Q ss_pred EeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCC-eEEECCcccCCCChHHHHhhcce
Q 000984 1067 KIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAG-HITLDGVEIQKLQLKWLRQQMGL 1123 (1198)
Q Consensus 1067 ~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G-~I~IDG~dI~~i~l~~LR~~Isi 1123 (1198)
=|++|..+-|.|++|||||||+..++.-..-..| -++||... .++.+.+ +.+++
T Consensus 50 Gi~~g~itei~G~~gsGKTtl~l~~~~~~q~~g~~~vyidtE~--~~~~~~a-~~~Gv 104 (263)
T d1u94a1 50 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEH--ALDPIYA-RKLGV 104 (263)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSC--CCCHHHH-HHTTC
T ss_pred CccCceEEEEecCCCcHHHHHHHHHHHHHHcCCCEEEEEcccc--ccCHHHH-HHhCC
Confidence 5899999999999999999999777766554444 48888765 3444433 45565
|
| >d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab4a species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.16 E-value=0.062 Score=51.74 Aligned_cols=20 Identities=25% Similarity=0.567 Sum_probs=18.3
Q ss_pred EEEEEcCCCCCHHHHHHHHh
Q 000984 1073 TVALVGESGSGKSTVVSLLQ 1092 (1198)
Q Consensus 1073 kvaIVG~SGSGKSTL~~lL~ 1092 (1198)
||++||..|+|||||++-+.
T Consensus 7 KI~lvG~~~vGKTsll~~~~ 26 (174)
T d2bmea1 7 KFLVIGNAGTGKSCLLHQFI 26 (174)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHH
Confidence 49999999999999999776
|
| >d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-33b species: Mouse (Mus musculus) [TaxId: 10090]
Probab=90.16 E-value=0.067 Score=50.93 Aligned_cols=21 Identities=19% Similarity=0.284 Sum_probs=18.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 000984 414 TAALVGQSGSGKSTVISLIER 434 (1198)
Q Consensus 414 ~~~ivG~~GsGKStl~~~l~g 434 (1198)
+++++|..|+|||||++.+..
T Consensus 4 Kv~liG~~~vGKTsLl~~~~~ 24 (165)
T d1z06a1 4 KIIVIGDSNVGKTCLTYRFCA 24 (165)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 589999999999999987764
|
| >d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Meiotic recombination protein DMC1/LIM15 homolog species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.16 E-value=0.069 Score=54.69 Aligned_cols=26 Identities=23% Similarity=0.244 Sum_probs=23.7
Q ss_pred EeeCCCEEEEEcCCCCCHHHHHHHHh
Q 000984 1067 KIRAGKTVALVGESGSGKSTVVSLLQ 1092 (1198)
Q Consensus 1067 ~I~~GekvaIVG~SGSGKSTL~~lL~ 1092 (1198)
=|++|+.+-|.|++||||||++.-++
T Consensus 33 Gip~G~~~~i~G~~GsGKT~lalq~~ 58 (258)
T d1v5wa_ 33 GIESMAITEAFGEFRTGKTQLSHTLC 58 (258)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHH
T ss_pred CCcCCEEEEEECCCCCCHHHHHHHHH
Confidence 48999999999999999999997665
|
| >d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoA species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.10 E-value=0.063 Score=51.88 Aligned_cols=22 Identities=23% Similarity=0.546 Sum_probs=19.3
Q ss_pred CEEEEEcCCCCCHHHHHHHHhc
Q 000984 1072 KTVALVGESGSGKSTVVSLLQR 1093 (1198)
Q Consensus 1072 ekvaIVG~SGSGKSTL~~lL~R 1093 (1198)
-||.+||.+|+|||||++-+..
T Consensus 3 ~KivvvG~~~vGKTsLi~~~~~ 24 (177)
T d1kmqa_ 3 KKLVIVGDGACGKTCLLIVNSK 24 (177)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCcCHHHHHHHHHh
Confidence 3799999999999999987664
|
| >d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=90.09 E-value=0.076 Score=53.62 Aligned_cols=37 Identities=19% Similarity=0.189 Sum_probs=26.7
Q ss_pred eeCCCEEEEEcCCCCCHHHHHH-HHhcccCCCCCeEEE
Q 000984 1068 IRAGKTVALVGESGSGKSTVVS-LLQRFYDPDAGHITL 1104 (1198)
Q Consensus 1068 I~~GekvaIVG~SGSGKSTL~~-lL~R~ydp~~G~I~I 1104 (1198)
+++|+.+-|.|++|+||||++. ++..........+.+
T Consensus 23 i~~G~~~~I~G~~G~GKT~la~~~~~~~~~~~~~~~~~ 60 (242)
T d1tf7a1 23 LPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVF 60 (242)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEE
T ss_pred CcCCeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCccc
Confidence 8999999999999999999984 444333323334444
|
| >d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Centaurin gamma 1, G domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.05 E-value=0.11 Score=50.25 Aligned_cols=21 Identities=29% Similarity=0.436 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 000984 414 TAALVGQSGSGKSTVISLIER 434 (1198)
Q Consensus 414 ~~~ivG~~GsGKStl~~~l~g 434 (1198)
+++++|.+|+|||||++.+.+
T Consensus 7 ki~vlG~~~vGKTsLi~~~~~ 27 (175)
T d2bmja1 7 RLGVLGDARSGKSSLIHRFLT 27 (175)
T ss_dssp EEEEECCTTTTHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 689999999999999997765
|
| >d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Metallochaperone MeaB species: Methylobacterium extorquens [TaxId: 408]
Probab=90.04 E-value=0.061 Score=57.51 Aligned_cols=25 Identities=32% Similarity=0.498 Sum_probs=22.1
Q ss_pred CCEEEEEcCCCCCHHHHHHHHhccc
Q 000984 1071 GKTVALVGESGSGKSTVVSLLQRFY 1095 (1198)
Q Consensus 1071 GekvaIVG~SGSGKSTL~~lL~R~y 1095 (1198)
.-+|||.|+-|||||||+..|.+.+
T Consensus 51 ~~~igitG~pGaGKSTli~~l~~~~ 75 (323)
T d2qm8a1 51 AIRVGITGVPGVGKSTTIDALGSLL 75 (323)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred ceEEeeeCCCCCCHHHHHHHHHHHH
Confidence 4579999999999999999998754
|
| >d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=90.02 E-value=0.051 Score=55.17 Aligned_cols=23 Identities=26% Similarity=0.367 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhccC
Q 000984 414 TAALVGQSGSGKSTVISLIERFY 436 (1198)
Q Consensus 414 ~~~ivG~~GsGKStl~~~l~g~~ 436 (1198)
.+.|.||+|+||||++++++..+
T Consensus 47 ~lll~Gp~G~GKTtla~~iak~l 69 (231)
T d1iqpa2 47 HLLFAGPPGVGKTTAALALAREL 69 (231)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHHH
Confidence 47899999999999999999876
|
| >d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein M-Ras (XRas) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=90.01 E-value=0.12 Score=49.53 Aligned_cols=28 Identities=32% Similarity=0.577 Sum_probs=22.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhc-----ccCCCCC
Q 000984 1073 TVALVGESGSGKSTVVSLLQR-----FYDPDAG 1100 (1198)
Q Consensus 1073 kvaIVG~SGSGKSTL~~lL~R-----~ydp~~G 1100 (1198)
||.+||.+|+|||||++-+.. -|+|+-|
T Consensus 6 Ki~lvG~~~vGKTsll~~~~~~~~~~~~~~t~~ 38 (169)
T d1x1ra1 6 KLVVVGDGGVGKSALTIQFFQKIFVPDYDPTIE 38 (169)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSSCCTTCCTTCC
T ss_pred EEEEECCCCcCHHHHHHHHHhCCCCcccCccee
Confidence 689999999999999997763 3455544
|
| >d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab14 species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.01 E-value=0.069 Score=50.99 Aligned_cols=21 Identities=24% Similarity=0.482 Sum_probs=18.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 000984 414 TAALVGQSGSGKSTVISLIER 434 (1198)
Q Consensus 414 ~~~ivG~~GsGKStl~~~l~g 434 (1198)
+++|+|.+|+|||||++.+.+
T Consensus 6 KivlvG~~~vGKTsli~~~~~ 26 (166)
T d1z0fa1 6 KYIIIGDMGVGKSCLLHQFTE 26 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 589999999999999988775
|
| >d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein Ygr205W species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.01 E-value=0.069 Score=55.69 Aligned_cols=22 Identities=32% Similarity=0.262 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcc
Q 000984 414 TAALVGQSGSGKSTVISLIERF 435 (1198)
Q Consensus 414 ~~~ivG~~GsGKStl~~~l~g~ 435 (1198)
++||.|+.|||||||...|.-.
T Consensus 29 iIGi~G~qGSGKSTl~~~l~~~ 50 (286)
T d1odfa_ 29 FIFFSGPQGSGKSFTSIQIYNH 50 (286)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEeECCCCCCHHHHHHHHHHH
Confidence 7899999999999999877644
|
| >d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab9a species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.98 E-value=0.07 Score=51.38 Aligned_cols=21 Identities=29% Similarity=0.515 Sum_probs=18.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 000984 414 TAALVGQSGSGKSTVISLIER 434 (1198)
Q Consensus 414 ~~~ivG~~GsGKStl~~~l~g 434 (1198)
+++++|++|+|||||++.+.+
T Consensus 8 KI~vvG~~~vGKSSli~~~~~ 28 (174)
T d1wmsa_ 8 KVILLGDGGVGKSSLMNRYVT 28 (174)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 489999999999999987764
|
| >d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein M-Ras (XRas) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=89.96 E-value=0.12 Score=49.44 Aligned_cols=21 Identities=29% Similarity=0.425 Sum_probs=18.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 000984 414 TAALVGQSGSGKSTVISLIER 434 (1198)
Q Consensus 414 ~~~ivG~~GsGKStl~~~l~g 434 (1198)
++.++|.+|||||||++.+.+
T Consensus 6 Ki~lvG~~~vGKTsll~~~~~ 26 (169)
T d1x1ra1 6 KLVVVGDGGVGKSALTIQFFQ 26 (169)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 588999999999999998775
|
| >d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=89.95 E-value=0.075 Score=53.26 Aligned_cols=27 Identities=19% Similarity=0.315 Sum_probs=24.7
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhccCC
Q 000984 411 SGTTAALVGQSGSGKSTVISLIERFYD 437 (1198)
Q Consensus 411 ~g~~~~ivG~~GsGKStl~~~l~g~~~ 437 (1198)
+|.+++|-|+-||||||++++|...+.
T Consensus 2 kGk~I~iEG~DGsGKST~~~~L~~~L~ 28 (214)
T d1tmka_ 2 RGKLILIEGLDRTGKTTQCNILYKKLQ 28 (214)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred CeEEEEEECCCCCcHHHHHHHHHHHHH
Confidence 699999999999999999999987664
|
| >d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rac species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.93 E-value=0.069 Score=51.93 Aligned_cols=21 Identities=19% Similarity=0.379 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 000984 414 TAALVGQSGSGKSTVISLIER 434 (1198)
Q Consensus 414 ~~~ivG~~GsGKStl~~~l~g 434 (1198)
+++|+|.+|+|||||++.+..
T Consensus 7 KivviG~~~vGKTsli~~~~~ 27 (183)
T d1mh1a_ 7 KCVVVGDGAVGKTCLLISYTT 27 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 799999999999999987764
|
| >d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab26 species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.91 E-value=0.072 Score=51.05 Aligned_cols=21 Identities=38% Similarity=0.662 Sum_probs=18.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 000984 1073 TVALVGESGSGKSTVVSLLQR 1093 (1198)
Q Consensus 1073 kvaIVG~SGSGKSTL~~lL~R 1093 (1198)
||++||+.|+|||||++-+..
T Consensus 8 Ki~vvG~~~vGKTsli~~~~~ 28 (170)
T d2g6ba1 8 KVMLVGDSGVGKTCLLVRFKD 28 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 599999999999999996644
|
| >d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab21 species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.89 E-value=0.072 Score=50.89 Aligned_cols=21 Identities=19% Similarity=0.349 Sum_probs=18.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 000984 414 TAALVGQSGSGKSTVISLIER 434 (1198)
Q Consensus 414 ~~~ivG~~GsGKStl~~~l~g 434 (1198)
+++|+|..|+|||||++.+.+
T Consensus 5 KivlvG~~~vGKTsLi~r~~~ 25 (167)
T d1z08a1 5 KVVLLGEGCVGKTSLVLRYCE 25 (167)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 589999999999999998764
|
| >d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-22a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=89.88 E-value=0.072 Score=50.87 Aligned_cols=21 Identities=29% Similarity=0.543 Sum_probs=19.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 000984 414 TAALVGQSGSGKSTVISLIER 434 (1198)
Q Consensus 414 ~~~ivG~~GsGKStl~~~l~g 434 (1198)
+++|+|..|+|||||++-+..
T Consensus 6 Ki~lvG~~~vGKTsli~rl~~ 26 (167)
T d1z0ja1 6 KVCLLGDTGVGKSSIMWRFVE 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 589999999999999988874
|
| >d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoA species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.88 E-value=0.067 Score=51.69 Aligned_cols=21 Identities=19% Similarity=0.465 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 000984 414 TAALVGQSGSGKSTVISLIER 434 (1198)
Q Consensus 414 ~~~ivG~~GsGKStl~~~l~g 434 (1198)
+++|+|++|+|||||++.+.+
T Consensus 4 KivvvG~~~vGKTsLi~~~~~ 24 (177)
T d1kmqa_ 4 KLVIVGDGACGKTCLLIVNSK 24 (177)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 689999999999999988775
|
| >d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab5a species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.86 E-value=0.075 Score=50.94 Aligned_cols=20 Identities=40% Similarity=0.577 Sum_probs=18.6
Q ss_pred EEEEEcCCCCCHHHHHHHHh
Q 000984 1073 TVALVGESGSGKSTVVSLLQ 1092 (1198)
Q Consensus 1073 kvaIVG~SGSGKSTL~~lL~ 1092 (1198)
||.+||.+|+|||||++-+.
T Consensus 8 Ki~vvG~~~vGKTsLi~~l~ 27 (170)
T d1r2qa_ 8 KLVLLGESAVGKSSLVLRFV 27 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHH
Confidence 78999999999999998877
|
| >d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermus thermophilus [TaxId: 274]
Probab=89.83 E-value=0.053 Score=55.33 Aligned_cols=24 Identities=29% Similarity=0.416 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhccCC
Q 000984 414 TAALVGQSGSGKSTVISLIERFYD 437 (1198)
Q Consensus 414 ~~~ivG~~GsGKStl~~~l~g~~~ 437 (1198)
-+.+.||+|+||||+++++.+++.
T Consensus 37 ~~Ll~GPpG~GKTtla~~la~~~~ 60 (239)
T d1ixsb2 37 HLLLFGPPGLGKTTLAHVIAHELG 60 (239)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 367999999999999999998763
|
| >d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Escherichia coli [TaxId: 562]
Probab=89.79 E-value=0.061 Score=53.44 Aligned_cols=25 Identities=32% Similarity=0.566 Sum_probs=20.6
Q ss_pred CEEEEEcCCCCcHHHHHHHHhccCC
Q 000984 413 TTAALVGQSGSGKSTVISLIERFYD 437 (1198)
Q Consensus 413 ~~~~ivG~~GsGKStl~~~l~g~~~ 437 (1198)
..+++|||+|+||||.+--|...+.
T Consensus 10 ~vi~lvGptGvGKTTTiAKLA~~~~ 34 (211)
T d2qy9a2 10 FVILMVGVNGVGKTTTIGKLARQFE 34 (211)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHH
Confidence 5789999999999998877776554
|
| >d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=89.77 E-value=0.067 Score=52.60 Aligned_cols=27 Identities=41% Similarity=0.696 Sum_probs=22.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcc---cCCCCC
Q 000984 1073 TVALVGESGSGKSTVVSLLQRF---YDPDAG 1100 (1198)
Q Consensus 1073 kvaIVG~SGSGKSTL~~lL~R~---ydp~~G 1100 (1198)
|+.|+|.+|+|||||++-+ +| +.|+-|
T Consensus 4 KivllG~~~vGKTsll~r~-~f~~~~~pTiG 33 (200)
T d1zcba2 4 KILLLGAGESGKSTFLKQM-RIIHGQDPTKG 33 (200)
T ss_dssp EEEEECSTTSSHHHHHHHH-HHHHSCCCCSS
T ss_pred EEEEECCCCCCHHHHHHHH-hcCCCCCCeee
Confidence 7899999999999999887 44 347777
|
| >d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=89.66 E-value=0.079 Score=53.95 Aligned_cols=25 Identities=20% Similarity=0.347 Sum_probs=23.2
Q ss_pred eeCCCEEEEEcCCCCCHHHHHHHHh
Q 000984 1068 IRAGKTVALVGESGSGKSTVVSLLQ 1092 (1198)
Q Consensus 1068 I~~GekvaIVG~SGSGKSTL~~lL~ 1092 (1198)
+++|+.+-|.|++|+||||++.-+.
T Consensus 31 l~~G~l~~i~G~~G~GKT~~~l~~a 55 (258)
T d2i1qa2 31 LESQSVTEFAGVFGSGKTQIMHQSC 55 (258)
T ss_dssp EETTEEEEEEESTTSSHHHHHHHHH
T ss_pred ccCCeEEEEEeCCCCCHHHHHHHHH
Confidence 8999999999999999999987665
|
| >d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6, N-domain species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=89.63 E-value=0.12 Score=53.23 Aligned_cols=29 Identities=24% Similarity=0.499 Sum_probs=25.0
Q ss_pred CEEEEEcCCCCCHHHHHHHHhcccCCCCC
Q 000984 1072 KTVALVGESGSGKSTVVSLLQRFYDPDAG 1100 (1198)
Q Consensus 1072 ekvaIVG~SGSGKSTL~~lL~R~ydp~~G 1100 (1198)
..+-|+||+|+||||+++.|.+.+....+
T Consensus 44 ~~lll~GppGtGKT~l~~~l~~~l~~~~~ 72 (276)
T d1fnna2 44 PRATLLGRPGTGKTVTLRKLWELYKDKTT 72 (276)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTTSCC
T ss_pred CceEEECCCCCCHHHHHHHHHHHHhcccC
Confidence 47899999999999999999998865444
|
| >d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=89.56 E-value=0.08 Score=54.15 Aligned_cols=25 Identities=32% Similarity=0.477 Sum_probs=22.4
Q ss_pred EeeCCCEEEEEcCCCCCHHHHHHHH
Q 000984 1067 KIRAGKTVALVGESGSGKSTVVSLL 1091 (1198)
Q Consensus 1067 ~I~~GekvaIVG~SGSGKSTL~~lL 1091 (1198)
=+++|+.+-|.|++||||||+..-+
T Consensus 32 Glp~G~~~li~G~pGsGKT~~~lq~ 56 (254)
T d1pzna2 32 GIETQAITEVFGEFGSGKTQLAHTL 56 (254)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHH
T ss_pred CccCCEEEEEEcCCCCCHHHHHHHH
Confidence 3899999999999999999998644
|
| >d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Metallochaperone MeaB species: Methylobacterium extorquens [TaxId: 408]
Probab=89.54 E-value=0.074 Score=56.82 Aligned_cols=25 Identities=28% Similarity=0.478 Sum_probs=21.7
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhccC
Q 000984 412 GTTAALVGQSGSGKSTVISLIERFY 436 (1198)
Q Consensus 412 g~~~~ivG~~GsGKStl~~~l~g~~ 436 (1198)
.-.++|+|+.|+|||||+..|...+
T Consensus 51 ~~~igitG~pGaGKSTli~~l~~~~ 75 (323)
T d2qm8a1 51 AIRVGITGVPGVGKSTTIDALGSLL 75 (323)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred ceEEeeeCCCCCCHHHHHHHHHHHH
Confidence 3479999999999999999988654
|
| >d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C2 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=89.53 E-value=0.057 Score=54.85 Aligned_cols=22 Identities=23% Similarity=0.439 Sum_probs=20.5
Q ss_pred EEEEcCCCCcHHHHHHHHhccC
Q 000984 415 AALVGQSGSGKSTVISLIERFY 436 (1198)
Q Consensus 415 ~~ivG~~GsGKStl~~~l~g~~ 436 (1198)
+.+.||+|+||||+++++++.+
T Consensus 36 lll~Gp~G~GKTtl~~~i~~~l 57 (237)
T d1sxjd2 36 MLFYGPPGTGKTSTILALTKEL 57 (237)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCChHHHHHHHHHHH
Confidence 7899999999999999999865
|
| >d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab18 species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.51 E-value=0.078 Score=51.20 Aligned_cols=21 Identities=29% Similarity=0.548 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 000984 414 TAALVGQSGSGKSTVISLIER 434 (1198)
Q Consensus 414 ~~~ivG~~GsGKStl~~~l~g 434 (1198)
+++++|..|+|||||++.+.+
T Consensus 9 Ki~vvG~~~vGKTsli~~l~~ 29 (177)
T d1x3sa1 9 KILIIGESGVGKSSLLLRFTD 29 (177)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 589999999999999998875
|
| >d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.48 E-value=0.076 Score=51.09 Aligned_cols=21 Identities=29% Similarity=0.414 Sum_probs=19.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 000984 414 TAALVGQSGSGKSTVISLIER 434 (1198)
Q Consensus 414 ~~~ivG~~GsGKStl~~~l~g 434 (1198)
+++|+|..|+|||||++-+.+
T Consensus 8 Kv~lvG~~~vGKTsLi~r~~~ 28 (173)
T d2fn4a1 8 KLVVVGGGGVGKSALTIQFIQ 28 (173)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 689999999999999987764
|
| >d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Archaeal ATPase SSO1545 species: Sulfolobus solfataricus [TaxId: 2287]
Probab=89.43 E-value=0.082 Score=54.72 Aligned_cols=26 Identities=19% Similarity=0.268 Sum_probs=22.6
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhccC
Q 000984 411 SGTTAALVGQSGSGKSTVISLIERFY 436 (1198)
Q Consensus 411 ~g~~~~ivG~~GsGKStl~~~l~g~~ 436 (1198)
.+..+.|.||.|+|||||++.++...
T Consensus 28 ~~~~i~i~G~~G~GKTsLl~~~~~~~ 53 (283)
T d2fnaa2 28 RAPITLVLGLRRTGKSSIIKIGINEL 53 (283)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cCCEEEEEcCCCCcHHHHHHHHHHHC
Confidence 56789999999999999999887654
|
| >d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ran species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.35 E-value=0.06 Score=51.73 Aligned_cols=21 Identities=33% Similarity=0.510 Sum_probs=18.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 000984 414 TAALVGQSGSGKSTVISLIER 434 (1198)
Q Consensus 414 ~~~ivG~~GsGKStl~~~l~g 434 (1198)
+++++|++|+|||||++.+.+
T Consensus 5 Ki~vvG~~~vGKTsli~~~~~ 25 (170)
T d1i2ma_ 5 KLVLVGDGGTGKTTFVKRHLT 25 (170)
T ss_dssp EEEEEECTTSSHHHHHHTTC-
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 689999999999999987654
|
| >d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]
Probab=89.33 E-value=0.061 Score=52.24 Aligned_cols=22 Identities=23% Similarity=0.486 Sum_probs=19.2
Q ss_pred CEEEEEcCCCCcHHHHHHHHhc
Q 000984 413 TTAALVGQSGSGKSTVISLIER 434 (1198)
Q Consensus 413 ~~~~ivG~~GsGKStl~~~l~g 434 (1198)
=+++++|++|+|||||++.+.+
T Consensus 18 ~KI~lvG~~~vGKTsLi~~l~~ 39 (182)
T d1moza_ 18 LRILILGLDGAGKTTILYRLQI 39 (182)
T ss_dssp EEEEEEEETTSSHHHHHHHTCC
T ss_pred EEEEEECCCCCCHHHHHHHHhc
Confidence 3688999999999999998754
|
| >d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab18 species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.33 E-value=0.084 Score=50.96 Aligned_cols=21 Identities=33% Similarity=0.642 Sum_probs=18.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 000984 1073 TVALVGESGSGKSTVVSLLQR 1093 (1198)
Q Consensus 1073 kvaIVG~SGSGKSTL~~lL~R 1093 (1198)
||.+||..|+|||||++-|..
T Consensus 9 Ki~vvG~~~vGKTsli~~l~~ 29 (177)
T d1x3sa1 9 KILIIGESGVGKSSLLLRFTD 29 (177)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 589999999999999997764
|
| >d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ypt51 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=89.33 E-value=0.083 Score=50.57 Aligned_cols=21 Identities=24% Similarity=0.445 Sum_probs=18.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 000984 414 TAALVGQSGSGKSTVISLIER 434 (1198)
Q Consensus 414 ~~~ivG~~GsGKStl~~~l~g 434 (1198)
+++++|..|+|||||++-+.+
T Consensus 5 Ki~vvG~~~vGKTsLi~~~~~ 25 (170)
T d1ek0a_ 5 KLVLLGEAAVGKSSIVLRFVS 25 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 689999999999999987664
|
| >d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Ytp1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=89.33 E-value=0.079 Score=52.06 Aligned_cols=20 Identities=35% Similarity=0.602 Sum_probs=18.1
Q ss_pred EEEEEcCCCCCHHHHHHHHh
Q 000984 1073 TVALVGESGSGKSTVVSLLQ 1092 (1198)
Q Consensus 1073 kvaIVG~SGSGKSTL~~lL~ 1092 (1198)
||+|||+.|+|||||++-+.
T Consensus 8 KivvvG~~~vGKTsli~~l~ 27 (194)
T d2bcgy1 8 KLLLIGNSGVGKSCLLLRFS 27 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHh
Confidence 48999999999999999766
|
| >d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab8a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=89.19 E-value=0.06 Score=51.84 Aligned_cols=21 Identities=33% Similarity=0.536 Sum_probs=9.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 000984 414 TAALVGQSGSGKSTVISLIER 434 (1198)
Q Consensus 414 ~~~ivG~~GsGKStl~~~l~g 434 (1198)
+++++|..|+|||||++.+++
T Consensus 8 Ki~vvG~~~vGKTsLi~~l~~ 28 (173)
T d2fu5c1 8 KLLLIGDSGVGKTCVLFRFSE 28 (173)
T ss_dssp EEEEECCCCC-----------
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 589999999999999987764
|
| >d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6, N-domain species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=89.18 E-value=0.11 Score=53.64 Aligned_cols=29 Identities=24% Similarity=0.503 Sum_probs=24.6
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhccCCCCC
Q 000984 412 GTTAALVGQSGSGKSTVISLIERFYDPQA 440 (1198)
Q Consensus 412 g~~~~ivG~~GsGKStl~~~l~g~~~~~~ 440 (1198)
...+.|.||+|+||||+++.++..+....
T Consensus 43 ~~~lll~GppGtGKT~l~~~l~~~l~~~~ 71 (276)
T d1fnna2 43 YPRATLLGRPGTGKTVTLRKLWELYKDKT 71 (276)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTTSC
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHhccc
Confidence 35789999999999999999999875433
|
| >d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab4a species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.15 E-value=0.082 Score=50.83 Aligned_cols=21 Identities=24% Similarity=0.493 Sum_probs=18.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 000984 414 TAALVGQSGSGKSTVISLIER 434 (1198)
Q Consensus 414 ~~~ivG~~GsGKStl~~~l~g 434 (1198)
+++++|..|+|||||++.+.+
T Consensus 7 KI~lvG~~~vGKTsll~~~~~ 27 (174)
T d2bmea1 7 KFLVIGNAGTGKSCLLHQFIE 27 (174)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 489999999999999998764
|
| >d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=89.15 E-value=0.1 Score=53.13 Aligned_cols=26 Identities=23% Similarity=0.386 Sum_probs=23.0
Q ss_pred eeCCCEEEEEcCCCCCHHHHHHHHhc
Q 000984 1068 IRAGKTVALVGESGSGKSTVVSLLQR 1093 (1198)
Q Consensus 1068 I~~GekvaIVG~SGSGKSTL~~lL~R 1093 (1198)
+++|+.+-|.|++||||||++.-++.
T Consensus 23 i~~gsl~li~G~pGsGKT~l~~qia~ 48 (242)
T d1tf7a2 23 FFKDSIILATGATGTGKTLLVSRFVE 48 (242)
T ss_dssp EESSCEEEEEECTTSSHHHHHHHHHH
T ss_pred CcCCeEEEEEeCCCCCHHHHHHHHHH
Confidence 89999999999999999999855543
|
| >d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab5a species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.10 E-value=0.088 Score=50.40 Aligned_cols=21 Identities=29% Similarity=0.488 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 000984 414 TAALVGQSGSGKSTVISLIER 434 (1198)
Q Consensus 414 ~~~ivG~~GsGKStl~~~l~g 434 (1198)
+++++|..|+|||||++-+..
T Consensus 8 Ki~vvG~~~vGKTsLi~~l~~ 28 (170)
T d1r2qa_ 8 KLVLLGESAVGKSSLVLRFVK 28 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 689999999999999988874
|
| >d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus, EF-G-2 [TaxId: 274]
Probab=89.06 E-value=0.093 Score=54.28 Aligned_cols=50 Identities=26% Similarity=0.377 Sum_probs=35.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhccC--CCCCCeEEECCeecCCcCHHHHhcceEE
Q 000984 414 TAALVGQSGSGKSTVISLIERFY--DPQAGEVLIDGINLKEFQLQWIRKKIGL 464 (1198)
Q Consensus 414 ~~~ivG~~GsGKStl~~~l~g~~--~~~~G~i~i~g~~~~~~~~~~~r~~i~~ 464 (1198)
-++|+|+.|||||||+.+|+..- ....|++. +|..+.+..+++..+++++
T Consensus 4 Nv~iiGh~~~GKTtL~e~ll~~~g~~~~~g~v~-~g~~~~D~~~~E~~r~~ti 55 (267)
T d2dy1a2 4 TVALVGHAGSGKTTLTEALLYKTGAKERRGRVE-EGTTTTDYTPEAKLHRTTV 55 (267)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGG-GTCCSSCCSHHHHHTTSCC
T ss_pred EEEEEcCCCCcHHHHHHHHHHHcCCchhhccch-hccccccchHHHHHhCCeE
Confidence 37999999999999999996432 12345553 5666667777776666553
|
| >d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Transcription termination factor Rho, ATPase domain species: Escherichia coli [TaxId: 562]
Probab=88.98 E-value=0.078 Score=55.14 Aligned_cols=30 Identities=20% Similarity=0.334 Sum_probs=27.2
Q ss_pred EEEeCCCEEEEEcCCCCcHHHHHHHHhccC
Q 000984 407 ISISSGTTAALVGQSGSGKSTVISLIERFY 436 (1198)
Q Consensus 407 l~i~~g~~~~ivG~~GsGKStl~~~l~g~~ 436 (1198)
+.|-+|++.+|+|++|+|||||+..|.+-.
T Consensus 38 ~PigrGQr~~I~g~~g~GKT~l~~~i~~~~ 67 (289)
T d1xpua3 38 SPIGRGQRGLIVAPPKAGKTMLLQNIAQSI 67 (289)
T ss_dssp SCCBTTCEEEEEECSSSSHHHHHHHHHHHH
T ss_pred ccccCCCeeeEeCCCCCCHHHHHHHHHHHH
Confidence 578899999999999999999999988744
|
| >d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=88.93 E-value=0.081 Score=55.97 Aligned_cols=23 Identities=30% Similarity=0.401 Sum_probs=21.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhccc
Q 000984 1073 TVALVGESGSGKSTVVSLLQRFY 1095 (1198)
Q Consensus 1073 kvaIVG~SGSGKSTL~~lL~R~y 1095 (1198)
.+++||...||||||+++|+|.-
T Consensus 28 ~ivvvG~~SsGKSsliNaLlg~~ 50 (299)
T d2akab1 28 QIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSC
T ss_pred eEEEEcCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999954
|
| >d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxynucleoside monophosphate kinase species: Bacteriophage T4 [TaxId: 10665]
Probab=88.83 E-value=0.088 Score=53.64 Aligned_cols=22 Identities=32% Similarity=0.436 Sum_probs=19.5
Q ss_pred CEEEEEcCCCCCHHHHHHHHhc
Q 000984 1072 KTVALVGESGSGKSTVVSLLQR 1093 (1198)
Q Consensus 1072 ekvaIVG~SGSGKSTL~~lL~R 1093 (1198)
..|||.|.-||||||+++.|..
T Consensus 2 ~iIgiTG~igSGKsTva~~l~e 23 (241)
T d1deka_ 2 KLIFLSGVKRSGKDTTADFIMS 23 (241)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 3699999999999999999853
|
| >d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=88.79 E-value=0.15 Score=52.16 Aligned_cols=36 Identities=22% Similarity=0.379 Sum_probs=27.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccC
Q 000984 1073 TVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQ 1110 (1198)
Q Consensus 1073 kvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~ 1110 (1198)
.+-|.||+|+||||++++|++-...+ -+.+++.+.+
T Consensus 54 ~lll~GPpG~GKTt~a~~la~~~~~~--~~~~~~~~~~ 89 (253)
T d1sxja2 54 AAMLYGPPGIGKTTAAHLVAQELGYD--ILEQNASDVR 89 (253)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTTCE--EEEECTTSCC
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhh--hhccccccch
Confidence 36799999999999999999976532 3456655543
|
| >d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Archaeal ATPase SSO1545 species: Sulfolobus solfataricus [TaxId: 2287]
Probab=88.76 E-value=0.095 Score=54.23 Aligned_cols=27 Identities=15% Similarity=0.250 Sum_probs=22.8
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHhcccC
Q 000984 1070 AGKTVALVGESGSGKSTVVSLLQRFYD 1096 (1198)
Q Consensus 1070 ~GekvaIVG~SGSGKSTL~~lL~R~yd 1096 (1198)
.+..+.|+|++|+|||||++-+++-..
T Consensus 28 ~~~~i~i~G~~G~GKTsLl~~~~~~~~ 54 (283)
T d2fnaa2 28 RAPITLVLGLRRTGKSSIIKIGINELN 54 (283)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred cCCEEEEEcCCCCcHHHHHHHHHHHCC
Confidence 567899999999999999998776443
|
| >d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=88.75 E-value=0.081 Score=54.27 Aligned_cols=23 Identities=26% Similarity=0.300 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhccC
Q 000984 414 TAALVGQSGSGKSTVISLIERFY 436 (1198)
Q Consensus 414 ~~~ivG~~GsGKStl~~~l~g~~ 436 (1198)
-+.+.||+|||||+++++|....
T Consensus 42 ~vLL~GppGtGKT~la~alA~~~ 64 (246)
T d1d2na_ 42 SVLLEGPPHSGKTALAAKIAEES 64 (246)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHhhcc
Confidence 57899999999999999999865
|
| >d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoQ species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.74 E-value=0.095 Score=51.04 Aligned_cols=20 Identities=20% Similarity=0.423 Sum_probs=18.2
Q ss_pred EEEEEcCCCCCHHHHHHHHh
Q 000984 1073 TVALVGESGSGKSTVVSLLQ 1092 (1198)
Q Consensus 1073 kvaIVG~SGSGKSTL~~lL~ 1092 (1198)
||.|||.+|+|||||++-+.
T Consensus 11 Ki~lvG~~~vGKTsLi~r~~ 30 (185)
T d2atxa1 11 KCVVVGDGAVGKTCLLMSYA 30 (185)
T ss_dssp EEEEEECTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 69999999999999998765
|
| >d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Archaeon Pyrococcus abyssi [TaxId: 29292]
Probab=88.74 E-value=0.094 Score=51.60 Aligned_cols=22 Identities=23% Similarity=0.492 Sum_probs=20.3
Q ss_pred EEEEcCCCCcHHHHHHHHhccC
Q 000984 415 AALVGQSGSGKSTVISLIERFY 436 (1198)
Q Consensus 415 ~~ivG~~GsGKStl~~~l~g~~ 436 (1198)
+||+|...+|||||++.|.|..
T Consensus 8 IaiiGhvd~GKSTL~~~L~g~~ 29 (195)
T d1kk1a3 8 IGMVGHVDHGKTTLTKALTGVW 29 (195)
T ss_dssp EEEECSTTSSHHHHHHHHHTCC
T ss_pred EEEEeccCCcHHHHHHHHHhhh
Confidence 7999999999999999999854
|
| >d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoE (RND3) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=88.71 E-value=0.14 Score=49.45 Aligned_cols=21 Identities=24% Similarity=0.559 Sum_probs=18.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 000984 414 TAALVGQSGSGKSTVISLIER 434 (1198)
Q Consensus 414 ~~~ivG~~GsGKStl~~~l~g 434 (1198)
+++++|.+|+|||||++.+..
T Consensus 4 KivliG~~~vGKTsli~r~~~ 24 (179)
T d1m7ba_ 4 KIVVVGDSQCGKTALLHVFAK 24 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 689999999999999976654
|
| >d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein PH0525 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=88.63 E-value=0.091 Score=56.19 Aligned_cols=22 Identities=32% Similarity=0.436 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhcc
Q 000984 1073 TVALVGESGSGKSTVVSLLQRF 1094 (1198)
Q Consensus 1073 kvaIVG~SGSGKSTL~~lL~R~ 1094 (1198)
+|||||..-+|||||+++|.+-
T Consensus 2 ~v~lvG~pn~GKStlfn~lt~~ 23 (319)
T d1wxqa1 2 EIGVVGKPNVGKSTFFSAATLV 23 (319)
T ss_dssp EEEEEECTTSSHHHHHHHHHC-
T ss_pred cEeEECCCCCCHHHHHHHHHCC
Confidence 6999999999999999999763
|
| >d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Escherichia coli [TaxId: 562]
Probab=88.62 E-value=0.097 Score=54.05 Aligned_cols=41 Identities=20% Similarity=0.288 Sum_probs=32.5
Q ss_pred EEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCe-EEECCe
Q 000984 408 SISSGTTAALVGQSGSGKSTVISLIERFYDPQAGE-VLIDGI 448 (1198)
Q Consensus 408 ~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~-i~i~g~ 448 (1198)
=+++|.++-|.||+|||||||+..++....-..|. +++|..
T Consensus 50 Gi~~g~itei~G~~gsGKTtl~l~~~~~~q~~g~~~vyidtE 91 (263)
T d1u94a1 50 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAE 91 (263)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred CccCceEEEEecCCCcHHHHHHHHHHHHHHcCCCEEEEEccc
Confidence 47899999999999999999998887766544444 566654
|
| >d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Staphylococcus xylosus [TaxId: 1288]
Probab=88.61 E-value=0.13 Score=48.96 Aligned_cols=32 Identities=25% Similarity=0.350 Sum_probs=24.4
Q ss_pred ccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhc
Q 000984 402 FSGFSISISSGTTAALVGQSGSGKSTVISLIER 434 (1198)
Q Consensus 402 l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g 434 (1198)
++.--+ .-.|.=|.|+|++|+||||+...|..
T Consensus 6 ~H~~~v-~~~g~gvli~G~sg~GKS~la~~l~~ 37 (169)
T d1ko7a2 6 LHGVLV-DVYGVGVLITGDSGIGKSETALELIK 37 (169)
T ss_dssp EESEEE-EETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEE-EECCEEEEEEeCCCCCHHHHHHHHHH
Confidence 444333 34688999999999999999877664
|
| >d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap1A species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.58 E-value=0.1 Score=49.72 Aligned_cols=20 Identities=25% Similarity=0.513 Sum_probs=18.3
Q ss_pred EEEEEcCCCCCHHHHHHHHh
Q 000984 1073 TVALVGESGSGKSTVVSLLQ 1092 (1198)
Q Consensus 1073 kvaIVG~SGSGKSTL~~lL~ 1092 (1198)
||.+||.+|+|||||++-+.
T Consensus 5 KivvvG~~~vGKTsli~r~~ 24 (167)
T d1c1ya_ 5 KLVVLGSGGVGKSALTVQFV 24 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 68999999999999998775
|
| >d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Gene 4 protein (g4p, DNA primase), helicase domain species: Bacteriophage T7 [TaxId: 10760]
Probab=88.58 E-value=0.078 Score=55.35 Aligned_cols=34 Identities=32% Similarity=0.390 Sum_probs=27.3
Q ss_pred ccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhc
Q 000984 1060 VFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQR 1093 (1198)
Q Consensus 1060 vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R 1093 (1198)
-|+++.-=+.||+.+.|.|+||+||||++.-+..
T Consensus 24 ~lD~~~~G~~~G~l~vi~G~~G~GKT~~~~~la~ 57 (277)
T d1cr2a_ 24 GINDKTLGARGGEVIMVTSGSGMGKSTFVRQQAL 57 (277)
T ss_dssp THHHHHCSBCTTCEEEEECSTTSSHHHHHHHHHH
T ss_pred hHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHH
Confidence 4555543479999999999999999999866653
|
| >d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=88.52 E-value=0.1 Score=51.65 Aligned_cols=24 Identities=25% Similarity=0.475 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhccCC
Q 000984 414 TAALVGQSGSGKSTVISLIERFYD 437 (1198)
Q Consensus 414 ~~~ivG~~GsGKStl~~~l~g~~~ 437 (1198)
+|+|-|.-||||||+++.|...+.
T Consensus 2 lI~ieG~dGsGKST~~~~L~~~l~ 25 (208)
T d1gsia_ 2 LIAIEGVDGAGKRTLVEKLSGAFR 25 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 588999999999999999987653
|
| >d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab26 species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.52 E-value=0.1 Score=49.92 Aligned_cols=21 Identities=33% Similarity=0.577 Sum_probs=18.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 000984 414 TAALVGQSGSGKSTVISLIER 434 (1198)
Q Consensus 414 ~~~ivG~~GsGKStl~~~l~g 434 (1198)
+++|+|+.|+|||||++.+.+
T Consensus 8 Ki~vvG~~~vGKTsli~~~~~ 28 (170)
T d2g6ba1 8 KVMLVGDSGVGKTCLLVRFKD 28 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 589999999999999987654
|
| >d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Ytp1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=88.49 E-value=0.095 Score=51.45 Aligned_cols=21 Identities=33% Similarity=0.518 Sum_probs=18.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 000984 414 TAALVGQSGSGKSTVISLIER 434 (1198)
Q Consensus 414 ~~~ivG~~GsGKStl~~~l~g 434 (1198)
+++|+|+.|+|||||++.+.+
T Consensus 8 KivvvG~~~vGKTsli~~l~~ 28 (194)
T d2bcgy1 8 KLLLIGNSGVGKSCLLLRFSD 28 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHhh
Confidence 489999999999999998774
|
| >d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=88.26 E-value=0.16 Score=49.38 Aligned_cols=30 Identities=30% Similarity=0.515 Sum_probs=25.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcccCCCCCeE
Q 000984 1073 TVALVGESGSGKSTVVSLLQRFYDPDAGHI 1102 (1198)
Q Consensus 1073 kvaIVG~SGSGKSTL~~lL~R~ydp~~G~I 1102 (1198)
||.+||..|+|||||++-+..-.-|+.|-.
T Consensus 4 KivllG~~~vGKTsl~~r~~~~~~~t~~~~ 33 (195)
T d1svsa1 4 KLLLLGAGESGKSTIVKQMKIIHEAGTGIV 33 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHSCCCSEE
T ss_pred EEEEECCCCCCHHHHHHHHhhCCCCCccEE
Confidence 789999999999999998777667777743
|
| >d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF6 [TaxId: 9606]
Probab=88.25 E-value=0.083 Score=50.76 Aligned_cols=21 Identities=24% Similarity=0.480 Sum_probs=19.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 000984 1073 TVALVGESGSGKSTVVSLLQR 1093 (1198)
Q Consensus 1073 kvaIVG~SGSGKSTL~~lL~R 1093 (1198)
||.+||++|+|||||++.+..
T Consensus 14 kIvlvG~~~vGKTSli~rl~~ 34 (173)
T d1e0sa_ 14 RILMLGLDAAGKTTILYKLKL 34 (173)
T ss_dssp EEEEEEETTSSHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 699999999999999998764
|
| >d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=88.21 E-value=0.088 Score=53.25 Aligned_cols=22 Identities=32% Similarity=0.457 Sum_probs=19.8
Q ss_pred EEEEcCCCCCHHHHHHHHhccc
Q 000984 1074 VALVGESGSGKSTVVSLLQRFY 1095 (1198)
Q Consensus 1074 vaIVG~SGSGKSTL~~lL~R~y 1095 (1198)
+-|.||+|+||||+++++.+-.
T Consensus 48 lll~Gp~G~GKTtla~~iak~l 69 (231)
T d1iqpa2 48 LLFAGPPGVGKTTAALALAREL 69 (231)
T ss_dssp EEEESCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHHH
Confidence 7899999999999999998743
|
| >d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap1A species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.21 E-value=0.11 Score=49.51 Aligned_cols=21 Identities=24% Similarity=0.433 Sum_probs=18.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 000984 414 TAALVGQSGSGKSTVISLIER 434 (1198)
Q Consensus 414 ~~~ivG~~GsGKStl~~~l~g 434 (1198)
++++||..|+|||||++-+..
T Consensus 5 KivvvG~~~vGKTsli~r~~~ 25 (167)
T d1c1ya_ 5 KLVVLGSGGVGKSALTVQFVQ 25 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 589999999999999988764
|
| >d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=88.13 E-value=0.11 Score=51.40 Aligned_cols=24 Identities=33% Similarity=0.544 Sum_probs=20.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhcccC
Q 000984 1073 TVALVGESGSGKSTVVSLLQRFYD 1096 (1198)
Q Consensus 1073 kvaIVG~SGSGKSTL~~lL~R~yd 1096 (1198)
.|+|-|.-||||||++++|...+.
T Consensus 2 lI~ieG~dGsGKST~~~~L~~~l~ 25 (208)
T d1gsia_ 2 LIAIEGVDGAGKRTLVEKLSGAFR 25 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 488999999999999999986553
|
| >d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Dictyostelium discoideum [TaxId: 44689]
Probab=88.03 E-value=0.1 Score=55.28 Aligned_cols=23 Identities=30% Similarity=0.410 Sum_probs=21.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhccc
Q 000984 1073 TVALVGESGSGKSTVVSLLQRFY 1095 (1198)
Q Consensus 1073 kvaIVG~SGSGKSTL~~lL~R~y 1095 (1198)
.+++||..+|||||++++|+|.-
T Consensus 26 ~ivVvG~~ssGKSSliNaLlG~~ 48 (306)
T d1jwyb_ 26 QIVVVGSQSSGKSSVLENIVGRD 48 (306)
T ss_dssp EEEEEECSSSSHHHHHHHHHTSC
T ss_pred eEEEEeCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999954
|
| >d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoE (RND3) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=88.00 E-value=0.11 Score=50.22 Aligned_cols=21 Identities=24% Similarity=0.646 Sum_probs=18.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 000984 1073 TVALVGESGSGKSTVVSLLQR 1093 (1198)
Q Consensus 1073 kvaIVG~SGSGKSTL~~lL~R 1093 (1198)
||.+||.+|+|||||++-+..
T Consensus 4 KivliG~~~vGKTsli~r~~~ 24 (179)
T d1m7ba_ 4 KIVVVGDSQCGKTALLHVFAK 24 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 789999999999999986643
|
| >d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.81 E-value=0.11 Score=54.26 Aligned_cols=33 Identities=24% Similarity=0.290 Sum_probs=25.4
Q ss_pred ccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhccc
Q 000984 1060 VFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFY 1095 (1198)
Q Consensus 1060 vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~y 1095 (1198)
+|+.++ +|=-.|+|+|+.++|||||+|.|++-.
T Consensus 24 ~l~~~~---~~v~vvsi~G~~~sGKS~llN~l~~~~ 56 (277)
T d1f5na2 24 ILSAIT---QPMVVVAIVGLYRTGKSYLMNKLAGKK 56 (277)
T ss_dssp HHHTCC---SBEEEEEEEEBTTSSHHHHHHHHTTCS
T ss_pred HHHcCC---CCEEEEEEECCCCCCHHHHHHHHcCCC
Confidence 455543 233479999999999999999999754
|
| >d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C2 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=87.72 E-value=0.097 Score=53.02 Aligned_cols=22 Identities=23% Similarity=0.475 Sum_probs=20.0
Q ss_pred EEEEcCCCCCHHHHHHHHhccc
Q 000984 1074 VALVGESGSGKSTVVSLLQRFY 1095 (1198)
Q Consensus 1074 vaIVG~SGSGKSTL~~lL~R~y 1095 (1198)
+-|.||+|+||||+++++.+-+
T Consensus 36 lll~Gp~G~GKTtl~~~i~~~l 57 (237)
T d1sxjd2 36 MLFYGPPGTGKTSTILALTKEL 57 (237)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCChHHHHHHHHHHH
Confidence 7899999999999999999853
|
| >d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=87.65 E-value=0.11 Score=54.83 Aligned_cols=23 Identities=26% Similarity=0.365 Sum_probs=21.1
Q ss_pred CEEEEEcCCCCCHHHHHHHHhcc
Q 000984 1072 KTVALVGESGSGKSTVVSLLQRF 1094 (1198)
Q Consensus 1072 ekvaIVG~SGSGKSTL~~lL~R~ 1094 (1198)
=++||||...+|||||+++|.+-
T Consensus 11 ~kiGivG~Pn~GKSTlfnalT~~ 33 (296)
T d1ni3a1 11 LKTGIVGMPNVGKSTFFRAITKS 33 (296)
T ss_dssp CEEEEEECSSSSHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHCC
Confidence 47999999999999999999864
|
| >d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF6 [TaxId: 9606]
Probab=87.65 E-value=0.097 Score=50.27 Aligned_cols=22 Identities=18% Similarity=0.332 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcc
Q 000984 414 TAALVGQSGSGKSTVISLIERF 435 (1198)
Q Consensus 414 ~~~ivG~~GsGKStl~~~l~g~ 435 (1198)
++.++|++|+|||||++.+.+-
T Consensus 14 kIvlvG~~~vGKTSli~rl~~~ 35 (173)
T d1e0sa_ 14 RILMLGLDAAGKTTILYKLKLG 35 (173)
T ss_dssp EEEEEEETTSSHHHHHHHTTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999998753
|
| >d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Dictyostelium discoideum [TaxId: 44689]
Probab=87.60 E-value=0.12 Score=54.82 Aligned_cols=23 Identities=35% Similarity=0.379 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhccC
Q 000984 414 TAALVGQSGSGKSTVISLIERFY 436 (1198)
Q Consensus 414 ~~~ivG~~GsGKStl~~~l~g~~ 436 (1198)
.++|||..+||||||+++|+|.-
T Consensus 26 ~ivVvG~~ssGKSSliNaLlG~~ 48 (306)
T d1jwyb_ 26 QIVVVGSQSSGKSSVLENIVGRD 48 (306)
T ss_dssp EEEEEECSSSSHHHHHHHHHTSC
T ss_pred eEEEEeCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999964
|
| >d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermus thermophilus [TaxId: 274]
Probab=87.55 E-value=0.17 Score=51.26 Aligned_cols=36 Identities=25% Similarity=0.385 Sum_probs=28.6
Q ss_pred EEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCC
Q 000984 1074 VALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQK 1111 (1198)
Q Consensus 1074 vaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~~ 1111 (1198)
+-+.||+|+||||+++++.+-+... ....+|.++..
T Consensus 38 ~Ll~GPpG~GKTtla~~la~~~~~~--~~~~~~~~~~~ 73 (239)
T d1ixsb2 38 LLLFGPPGLGKTTLAHVIAHELGVN--LRVTSGPAIEK 73 (239)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHTCC--EEEEETTTCCS
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCC--eEeccCCcccc
Confidence 5699999999999999999977643 45666766654
|
| >d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: CDC42 species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.53 E-value=0.12 Score=50.52 Aligned_cols=20 Identities=20% Similarity=0.420 Sum_probs=17.9
Q ss_pred EEEEEcCCCCCHHHHHHHHh
Q 000984 1073 TVALVGESGSGKSTVVSLLQ 1092 (1198)
Q Consensus 1073 kvaIVG~SGSGKSTL~~lL~ 1092 (1198)
||++||.+|+|||||++-+.
T Consensus 5 KvvllG~~~vGKTSli~r~~ 24 (191)
T d2ngra_ 5 KCVVVGDGAVGKTCLLISYT 24 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHH
Confidence 79999999999999987664
|
| >d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Archaeon Pyrococcus abyssi [TaxId: 29292]
Probab=87.49 E-value=0.13 Score=50.42 Aligned_cols=22 Identities=27% Similarity=0.513 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhcc
Q 000984 1073 TVALVGESGSGKSTVVSLLQRF 1094 (1198)
Q Consensus 1073 kvaIVG~SGSGKSTL~~lL~R~ 1094 (1198)
.|||+|.-.+|||||++.|.+.
T Consensus 7 nIaiiGhvd~GKSTL~~~L~g~ 28 (195)
T d1kk1a3 7 NIGMVGHVDHGKTTLTKALTGV 28 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHTC
T ss_pred EEEEEeccCCcHHHHHHHHHhh
Confidence 3799999999999999999864
|
| >d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoQ species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.46 E-value=0.13 Score=50.01 Aligned_cols=21 Identities=19% Similarity=0.395 Sum_probs=18.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 000984 414 TAALVGQSGSGKSTVISLIER 434 (1198)
Q Consensus 414 ~~~ivG~~GsGKStl~~~l~g 434 (1198)
+++|+|..|+|||||++.+..
T Consensus 11 Ki~lvG~~~vGKTsLi~r~~~ 31 (185)
T d2atxa1 11 KCVVVGDGAVGKTCLLMSYAN 31 (185)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhh
Confidence 589999999999999987664
|
| >d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=87.40 E-value=0.13 Score=53.36 Aligned_cols=48 Identities=23% Similarity=0.243 Sum_probs=21.8
Q ss_pred EEEEEcCCCCcHHHHHHHHh---ccCCCCCCeEEECCeecCCcCHHHHhcceE
Q 000984 414 TAALVGQSGSGKSTVISLIE---RFYDPQAGEVLIDGINLKEFQLQWIRKKIG 463 (1198)
Q Consensus 414 ~~~ivG~~GsGKStl~~~l~---g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~ 463 (1198)
-++|+|+.|||||||+-.|+ |..+. .|++. +|..+.+..+++..++++
T Consensus 8 ni~i~gh~~~GKTtL~e~ll~~~g~~~~-~g~v~-~~~~~~D~~~~E~~r~~s 58 (276)
T d2bv3a2 8 NIGIAAHIDAGKTTTTERILYYTGRIHK-IGEVH-EGAATMDFMEQERERGIT 58 (276)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHTSSCC---------------------CCCC
T ss_pred EEEEEeCCCCCHHHHHHHHHHhcCcccc-cccee-cCceEEeccHHHHhcCCc
Confidence 47999999999999998885 44332 35542 444445555555444443
|
| >d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=87.31 E-value=0.12 Score=54.56 Aligned_cols=23 Identities=30% Similarity=0.336 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhccC
Q 000984 414 TAALVGQSGSGKSTVISLIERFY 436 (1198)
Q Consensus 414 ~~~ivG~~GsGKStl~~~l~g~~ 436 (1198)
.++|||...||||||+++|+|.-
T Consensus 28 ~ivvvG~~SsGKSsliNaLlg~~ 50 (299)
T d2akab1 28 QIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSC
T ss_pred eEEEEcCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999954
|
| >d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=87.27 E-value=0.12 Score=51.15 Aligned_cols=22 Identities=18% Similarity=0.388 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcc
Q 000984 414 TAALVGQSGSGKSTVISLIERF 435 (1198)
Q Consensus 414 ~~~ivG~~GsGKStl~~~l~g~ 435 (1198)
-++|+|+.++|||||+..|++.
T Consensus 5 ni~iiGhvd~GKSTL~~~Ll~~ 26 (204)
T d2c78a3 5 NVGTIGHVDHGKTTLTAALTYV 26 (204)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEeCCCCcHHHHHHHHHHH
Confidence 4799999999999999999753
|
| >d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=87.11 E-value=0.16 Score=54.09 Aligned_cols=39 Identities=21% Similarity=0.263 Sum_probs=30.5
Q ss_pred CCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCC
Q 000984 1071 GKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQK 1111 (1198)
Q Consensus 1071 GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~~ 1111 (1198)
...+-++||||+|||.|++.|.+.+.. --|.+|.-+.++
T Consensus 52 ~~~~lf~Gp~GvGKT~lak~la~~l~~--~~i~~d~s~~~~ 90 (315)
T d1r6bx3 52 VGSFLFAGPTGVGKTEVTVQLSKALGI--ELLRFDMSEYME 90 (315)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHHHHTC--EEEEEEGGGCSS
T ss_pred ceEEEEECCCcchhHHHHHHHHhhccC--CeeEeccccccc
Confidence 335789999999999999999999863 367777655543
|
| >d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=87.10 E-value=0.15 Score=52.67 Aligned_cols=23 Identities=22% Similarity=0.338 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhccC
Q 000984 414 TAALVGQSGSGKSTVISLIERFY 436 (1198)
Q Consensus 414 ~~~ivG~~GsGKStl~~~l~g~~ 436 (1198)
-+.+.||+|||||++++++.++.
T Consensus 40 giLL~GppGtGKT~l~~ala~~~ 62 (258)
T d1e32a2 40 GILLYGPPGTGKTLIARAVANET 62 (258)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHT
T ss_pred eeEEecCCCCCchHHHHHHHHHh
Confidence 48899999999999999999975
|
| >d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=87.07 E-value=0.1 Score=52.48 Aligned_cols=22 Identities=23% Similarity=0.377 Sum_probs=20.1
Q ss_pred EEEEcCCCCcHHHHHHHHhccC
Q 000984 415 AALVGQSGSGKSTVISLIERFY 436 (1198)
Q Consensus 415 ~~ivG~~GsGKStl~~~l~g~~ 436 (1198)
+.+.||+|+||||+++++.+.+
T Consensus 39 ~ll~Gp~G~GKTt~a~~la~~l 60 (224)
T d1sxjb2 39 MIISGMPGIGKTTSVHCLAHEL 60 (224)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCchhhHHHHHHHH
Confidence 6799999999999999998865
|
| >d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: YFV helicase domain species: Yellow fever virus [TaxId: 11089]
Probab=86.88 E-value=0.096 Score=47.81 Aligned_cols=28 Identities=21% Similarity=0.258 Sum_probs=21.2
Q ss_pred eeCCCEEEEEcCCCCCHHHHH-HHHhccc
Q 000984 1068 IRAGKTVALVGESGSGKSTVV-SLLQRFY 1095 (1198)
Q Consensus 1068 I~~GekvaIVG~SGSGKSTL~-~lL~R~y 1095 (1198)
+++|+.+-|++|||||||..+ ..+.+..
T Consensus 4 l~~~~~~il~~~tGsGKT~~~~~~~~~~~ 32 (140)
T d1yksa1 4 LKKGMTTVLDFHPGAGKTRRFLPQILAEC 32 (140)
T ss_dssp TSTTCEEEECCCTTSSTTTTHHHHHHHHH
T ss_pred HHcCCcEEEEcCCCCChhHHHHHHHHHHh
Confidence 467999999999999999655 3444444
|
| >d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=86.81 E-value=0.14 Score=57.13 Aligned_cols=37 Identities=16% Similarity=0.487 Sum_probs=29.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCC
Q 000984 1073 TVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQK 1111 (1198)
Q Consensus 1073 kvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~~ 1111 (1198)
-|-+|||||+|||-|++.|.++.+.- =+..|+....+
T Consensus 51 NILliGPTGvGKTlLAr~LAk~l~VP--Fv~~daT~fTe 87 (443)
T d1g41a_ 51 NILMIGPTGVGKTEIARRLAKLANAP--FIKVEATKFTE 87 (443)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHTTCC--EEEEEGGGGC-
T ss_pred cEEEECCCCCCHHHHHHHHHHHhCCC--EEEeecceeee
Confidence 46799999999999999999998764 56666655554
|
| >d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of beta subunit of F1 ATP synthase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=86.69 E-value=0.21 Score=51.51 Aligned_cols=49 Identities=24% Similarity=0.350 Sum_probs=34.8
Q ss_pred cceEEeeCCCEEEEEcCCCCCHHHHHHHHhcc-cCCCCCeEEECCcccCC
Q 000984 1063 DLNLKIRAGKTVALVGESGSGKSTVVSLLQRF-YDPDAGHITLDGVEIQK 1111 (1198)
Q Consensus 1063 ~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~-ydp~~G~I~IDG~dI~~ 1111 (1198)
|.=+.+-.||+++|.|.+|+|||||+.-+.+= -.-+.+-+.+-++.-+.
T Consensus 60 D~l~pigkGQr~~If~~~g~GKt~l~~~i~~~~~~~~~~v~V~~~iGer~ 109 (276)
T d2jdid3 60 DLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERT 109 (276)
T ss_dssp HHHSCEETTCEEEEEECTTSSHHHHHHHHHHHHTTTCSSEEEEEEESCCH
T ss_pred eeeccccCCCEEEeeCCCCCCHHHHHHHHHHHHHhhCCCeEEEEEeccCh
Confidence 33468899999999999999999998777664 33344544444554443
|
| >d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: CDC42 species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.65 E-value=0.14 Score=49.94 Aligned_cols=21 Identities=19% Similarity=0.379 Sum_probs=18.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 000984 414 TAALVGQSGSGKSTVISLIER 434 (1198)
Q Consensus 414 ~~~ivG~~GsGKStl~~~l~g 434 (1198)
+++++|++|+|||||++.+.+
T Consensus 5 KvvllG~~~vGKTSli~r~~~ 25 (191)
T d2ngra_ 5 KCVVVGDGAVGKTCLLISYTT 25 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 689999999999999977654
|
| >d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxynucleoside monophosphate kinase species: Bacteriophage T4 [TaxId: 10665]
Probab=86.47 E-value=0.16 Score=51.68 Aligned_cols=23 Identities=30% Similarity=0.267 Sum_probs=20.2
Q ss_pred CEEEEEcCCCCcHHHHHHHHhcc
Q 000984 413 TTAALVGQSGSGKSTVISLIERF 435 (1198)
Q Consensus 413 ~~~~ivG~~GsGKStl~~~l~g~ 435 (1198)
.++||+|+-||||||..+.|...
T Consensus 2 ~iIgiTG~igSGKsTva~~l~e~ 24 (241)
T d1deka_ 2 KLIFLSGVKRSGKDTTADFIMSN 24 (241)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHh
Confidence 36899999999999999998653
|
| >d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Cow (Bos taurus) [TaxId: 9913]
Probab=86.41 E-value=0.18 Score=50.49 Aligned_cols=29 Identities=28% Similarity=0.337 Sum_probs=23.5
Q ss_pred CEEEEEcCCCCcHHHHHHHH-hccCCCCCC
Q 000984 413 TTAALVGQSGSGKSTVISLI-ERFYDPQAG 441 (1198)
Q Consensus 413 ~~~~ivG~~GsGKStl~~~l-~g~~~~~~G 441 (1198)
-++.++|.+|+|||||++-+ .+...|+-|
T Consensus 7 ~KilllG~~~vGKTsll~~~~~~~~~pTiG 36 (221)
T d1azta2 7 HRLLLLGAGESGKSTIVKQMRILHVVLTSG 36 (221)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHCCCCCS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCcCCCCC
Confidence 37899999999999999776 455667766
|
| >d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=86.30 E-value=0.12 Score=52.07 Aligned_cols=44 Identities=18% Similarity=0.381 Sum_probs=29.7
Q ss_pred CCCEEEEeCCCCCCCHHhHHHHHHHHHHHhCCCeEEEEecCcchh
Q 000984 540 DPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTV 584 (1198)
Q Consensus 540 ~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~ 584 (1198)
+.+++++||.- .+.......+.+.+.+..+...++++++....+
T Consensus 99 ~~kiiiiDe~d-~~~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~i 142 (227)
T d1sxjc2 99 GFKLIILDEAD-AMTNAAQNALRRVIERYTKNTRFCVLANYAHKL 142 (227)
T ss_dssp SCEEEEETTGG-GSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGS
T ss_pred CeEEEEEeccc-cchhhHHHHHHHHhhhcccceeeccccCcHHHh
Confidence 34699999974 455566667777777665555566777776544
|
| >d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=86.26 E-value=0.14 Score=57.03 Aligned_cols=45 Identities=16% Similarity=0.437 Sum_probs=31.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcceEEEcCCC
Q 000984 414 TAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEP 469 (1198)
Q Consensus 414 ~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~ 469 (1198)
=+.++||||||||-|++.|.++++. --+.+|+.... ..|||..|.
T Consensus 51 NILliGPTGvGKTlLAr~LAk~l~V--PFv~~daT~fT---------eaGYvG~DV 95 (443)
T d1g41a_ 51 NILMIGPTGVGKTEIARRLAKLANA--PFIKVEATKFT---------EVGYVGKEV 95 (443)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHTTC--CEEEEEGGGGC-------------CCCCT
T ss_pred cEEEECCCCCCHHHHHHHHHHHhCC--CEEEeecceee---------ecceeecch
Confidence 5789999999999999999998743 25666664332 488888876
|
| >d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.15 E-value=0.15 Score=53.07 Aligned_cols=24 Identities=25% Similarity=0.306 Sum_probs=21.6
Q ss_pred CEEEEEcCCCCcHHHHHHHHhccC
Q 000984 413 TTAALVGQSGSGKSTVISLIERFY 436 (1198)
Q Consensus 413 ~~~~ivG~~GsGKStl~~~l~g~~ 436 (1198)
-.|+|+||.++|||||++.|+|..
T Consensus 33 ~vvsi~G~~~sGKS~llN~l~~~~ 56 (277)
T d1f5na2 33 VVVAIVGLYRTGKSYLMNKLAGKK 56 (277)
T ss_dssp EEEEEEEBTTSSHHHHHHHHTTCS
T ss_pred EEEEEECCCCCCHHHHHHHHcCCC
Confidence 489999999999999999999843
|
| >d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Sulfolobus solfataricus [TaxId: 2287]
Probab=86.05 E-value=0.18 Score=49.84 Aligned_cols=24 Identities=25% Similarity=0.526 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhccCC
Q 000984 414 TAALVGQSGSGKSTVISLIERFYD 437 (1198)
Q Consensus 414 ~~~ivG~~GsGKStl~~~l~g~~~ 437 (1198)
-++|+|...+|||||+..|+|...
T Consensus 10 ni~iiGhVd~GKSTL~~~L~~~~~ 33 (205)
T d2qn6a3 10 NIGVVGHVDHGKTTLVQAITGIWT 33 (205)
T ss_dssp EEEEECSTTSSHHHHHHHHHSCCC
T ss_pred EEEEEEccCCcHHHHHHHHHhhhc
Confidence 479999999999999999998553
|
| >d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric replicative helicase repA species: Escherichia coli [TaxId: 562]
Probab=86.02 E-value=0.19 Score=51.97 Aligned_cols=30 Identities=37% Similarity=0.476 Sum_probs=24.6
Q ss_pred cccccceEEeeCCCEEEEEcCCCCCHHHHHHHHh
Q 000984 1059 QVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQ 1092 (1198)
Q Consensus 1059 ~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~ 1092 (1198)
+++.|+ .||+.+-|+|++|+||||++..|+
T Consensus 21 ~li~G~----~pg~~~~i~G~~G~GKS~l~l~la 50 (274)
T d1nlfa_ 21 YVLPNM----VAGTVGALVSPGGAGKSMLALQLA 50 (274)
T ss_dssp EEETTE----ETTSEEEEEESTTSSHHHHHHHHH
T ss_pred HHhCCc----cCCcEEEEEeCCCCCHHHHHHHHH
Confidence 466663 469999999999999999986654
|
| >d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of beta subunit of F1 ATP synthase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=86.01 E-value=0.2 Score=51.53 Aligned_cols=29 Identities=24% Similarity=0.369 Sum_probs=26.2
Q ss_pred EEEeCCCEEEEEcCCCCcHHHHHHHHhcc
Q 000984 407 ISISSGTTAALVGQSGSGKSTVISLIERF 435 (1198)
Q Consensus 407 l~i~~g~~~~ivG~~GsGKStl~~~l~g~ 435 (1198)
+.+-+||+++|.|++|+|||||+.-+..-
T Consensus 63 ~pigkGQr~~If~~~g~GKt~l~~~i~~~ 91 (276)
T d2jdid3 63 APYAKGGKIGLFGGAGVGKTVLIMELINN 91 (276)
T ss_dssp SCEETTCEEEEEECTTSSHHHHHHHHHHH
T ss_pred ccccCCCEEEeeCCCCCCHHHHHHHHHHH
Confidence 68889999999999999999998887654
|
| >d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Papillomavirus large T antigen helicase domain species: Simian virus 40 [TaxId: 10633]
Probab=85.99 E-value=0.14 Score=55.59 Aligned_cols=29 Identities=21% Similarity=0.236 Sum_probs=26.0
Q ss_pred EeCCCEEEEEcCCCCcHHHHHHHHhccCC
Q 000984 409 ISSGTTAALVGQSGSGKSTVISLIERFYD 437 (1198)
Q Consensus 409 i~~g~~~~ivG~~GsGKStl~~~l~g~~~ 437 (1198)
++++..+.++||+|+||||+.++|++++.
T Consensus 151 ~~~~~~~~~~g~~~~gk~~~~~~~~~~~~ 179 (362)
T d1svma_ 151 IPKKRYWLFKGPIDSGKTTLAAALLELCG 179 (362)
T ss_dssp CTTCCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CCCcCeEEEECCCCCCHHHHHHHHHHHcC
Confidence 36678999999999999999999999874
|
| >d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=85.47 E-value=0.15 Score=51.16 Aligned_cols=37 Identities=24% Similarity=0.313 Sum_probs=25.4
Q ss_pred EEEEcCCCCCHHHHHHHHhcccCCC---CCeEEECCcccC
Q 000984 1074 VALVGESGSGKSTVVSLLQRFYDPD---AGHITLDGVEIQ 1110 (1198)
Q Consensus 1074 vaIVG~SGSGKSTL~~lL~R~ydp~---~G~I~IDG~dI~ 1110 (1198)
+-+.||+|+||||++++|.+-.... ...+.++..|.+
T Consensus 39 ~ll~Gp~G~GKTt~a~~la~~l~~~~~~~~~~~~n~~~~~ 78 (224)
T d1sxjb2 39 MIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNASDDR 78 (224)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECTTSCC
T ss_pred EEEECCCCCCchhhHHHHHHHHhccccccccccccccccC
Confidence 6799999999999999987743221 224555555443
|
| >d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=85.46 E-value=0.24 Score=47.91 Aligned_cols=29 Identities=28% Similarity=0.432 Sum_probs=23.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhccCCCCCCe
Q 000984 414 TAALVGQSGSGKSTVISLIERFYDPQAGE 442 (1198)
Q Consensus 414 ~~~ivG~~GsGKStl~~~l~g~~~~~~G~ 442 (1198)
++.++|..|+|||||++-+....-|+.|.
T Consensus 4 KivllG~~~vGKTsl~~r~~~~~~~t~~~ 32 (195)
T d1svsa1 4 KLLLLGAGESGKSTIVKQMKIIHEAGTGI 32 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHSCCCSE
T ss_pred EEEEECCCCCCHHHHHHHHhhCCCCCccE
Confidence 68999999999999998877655566663
|
| >d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=85.36 E-value=0.19 Score=49.06 Aligned_cols=28 Identities=36% Similarity=0.514 Sum_probs=21.9
Q ss_pred EEEEEcCCCCcHHHHHHHHh--ccCCCCCC
Q 000984 414 TAALVGQSGSGKSTVISLIE--RFYDPQAG 441 (1198)
Q Consensus 414 ~~~ivG~~GsGKStl~~~l~--g~~~~~~G 441 (1198)
++.++|.+|+|||||++-+. -.+.|+-|
T Consensus 4 KivllG~~~vGKTsll~r~~f~~~~~pTiG 33 (200)
T d1zcba2 4 KILLLGAGESGKSTFLKQMRIIHGQDPTKG 33 (200)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHSCCCCSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCeee
Confidence 68999999999999998872 22346656
|
| >d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=85.30 E-value=0.17 Score=51.67 Aligned_cols=35 Identities=20% Similarity=0.230 Sum_probs=26.6
Q ss_pred CEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcc
Q 000984 1072 KTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVE 1108 (1198)
Q Consensus 1072 ekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~d 1108 (1198)
..|-+.||+|+|||++++.|.+-.... -+.++.-+
T Consensus 41 ~~vLL~GppGtGKT~la~alA~~~~~~--~~~i~~~~ 75 (246)
T d1d2na_ 41 VSVLLEGPPHSGKTALAAKIAEESNFP--FIKICSPD 75 (246)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHTCS--EEEEECGG
T ss_pred eEEEEECcCCCCHHHHHHHHhhccccc--cccccccc
Confidence 468899999999999999999865432 35565543
|
| >d1fx0a3 c.37.1.11 (A:97-372) Central domain of alpha subunit of F1 ATP synthase {Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of alpha subunit of F1 ATP synthase species: Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]
Probab=85.02 E-value=0.14 Score=53.05 Aligned_cols=44 Identities=14% Similarity=0.145 Sum_probs=32.6
Q ss_pred cceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECC
Q 000984 1063 DLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDG 1106 (1198)
Q Consensus 1063 ~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG 1106 (1198)
|.=+.|-+|||++|+|++|+|||+|+..+.+-..-+...+-+-|
T Consensus 59 D~l~pig~GQr~~Ifg~~g~GKt~l~~~~~~~~~~~~~v~V~~~ 102 (276)
T d1fx0a3 59 DAMIPVGRGQRELIIGDRQTGKTAVATDTILNQQGQNVICVYVA 102 (276)
T ss_dssp TTTSCCBTTCBCBEEESSSSSHHHHHHHHHHTCCTTTCEEEEEE
T ss_pred eccccccCCceEeeccCCCCChHHHHHHHHhhhcccCceeeeee
Confidence 33468889999999999999999999876655554444433433
|
| >d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=84.78 E-value=0.17 Score=50.86 Aligned_cols=21 Identities=29% Similarity=0.547 Sum_probs=19.4
Q ss_pred EEEEcCCCCCHHHHHHHHhcc
Q 000984 1074 VALVGESGSGKSTVVSLLQRF 1094 (1198)
Q Consensus 1074 vaIVG~SGSGKSTL~~lL~R~ 1094 (1198)
+-+.||+|+||||++++|++-
T Consensus 38 lLl~Gp~G~GKttl~~~la~~ 58 (227)
T d1sxjc2 38 LLFYGPPGTGKTSTIVALARE 58 (227)
T ss_dssp EEEECSSSSSHHHHHHHHHHH
T ss_pred EEEECCCCCChhHHHHHHHHH
Confidence 679999999999999999874
|
| >d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=84.57 E-value=0.22 Score=51.41 Aligned_cols=30 Identities=20% Similarity=0.340 Sum_probs=25.6
Q ss_pred EeeCCCEEEEEcCCCCCHHHHHHHHhcccC
Q 000984 1067 KIRAGKTVALVGESGSGKSTVVSLLQRFYD 1096 (1198)
Q Consensus 1067 ~I~~GekvaIVG~SGSGKSTL~~lL~R~yd 1096 (1198)
-+++...+-+.||+|+|||++++.+.+-+.
T Consensus 37 g~~~~~giLL~Gp~GtGKT~l~~ala~~~~ 66 (265)
T d1r7ra3 37 GMTPSKGVLFYGPPGCGKTLLAKAIANECQ 66 (265)
T ss_dssp CCCCCCEEEEBCCTTSSHHHHHHHHHHHTT
T ss_pred CCCCCCeEEEECCCCCcchhHHHHHHHHhC
Confidence 455666799999999999999999998765
|
| >d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Bacterial conjugative coupling protein TrwB species: Escherichia coli [TaxId: 562]
Probab=84.48 E-value=0.18 Score=56.21 Aligned_cols=35 Identities=20% Similarity=0.286 Sum_probs=25.8
Q ss_pred CEEEEEcCCCCCHHHHHH-HHhcccCCCCCeEEECC
Q 000984 1072 KTVALVGESGSGKSTVVS-LLQRFYDPDAGHITLDG 1106 (1198)
Q Consensus 1072 ekvaIVG~SGSGKSTL~~-lL~R~ydp~~G~I~IDG 1106 (1198)
..+.|+|+||||||++++ ++..+.....+-|.||.
T Consensus 51 ~H~~I~G~tGsGKT~~l~~li~~~~~~g~~~iiiD~ 86 (433)
T d1e9ra_ 51 RHLLVNGATGTGKSVLLRELAYTGLLRGDRMVIVDP 86 (433)
T ss_dssp GCEEEEECTTSSHHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred ceEEEEeCCCCcHHHHHHHHHHHHHhCCCCEEEEeC
Confidence 458999999999999885 56566655555666663
|
| >d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Cow (Bos taurus) [TaxId: 9913]
Probab=84.22 E-value=0.23 Score=49.70 Aligned_cols=29 Identities=31% Similarity=0.439 Sum_probs=22.2
Q ss_pred CEEEEEcCCCCCHHHHHHHHh-cccCCCCC
Q 000984 1072 KTVALVGESGSGKSTVVSLLQ-RFYDPDAG 1100 (1198)
Q Consensus 1072 ekvaIVG~SGSGKSTL~~lL~-R~ydp~~G 1100 (1198)
-||.++|.+|+|||||++-+. .=+.|+-|
T Consensus 7 ~KilllG~~~vGKTsll~~~~~~~~~pTiG 36 (221)
T d1azta2 7 HRLLLLGAGESGKSTIVKQMRILHVVLTSG 36 (221)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHCCCCCS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCcCCCCC
Confidence 378999999999999997653 33446666
|
| >d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Papillomavirus large T antigen helicase domain species: Simian virus 40 [TaxId: 10633]
Probab=83.99 E-value=0.22 Score=53.89 Aligned_cols=42 Identities=17% Similarity=0.164 Sum_probs=33.2
Q ss_pred EeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccC
Q 000984 1067 KIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQ 1110 (1198)
Q Consensus 1067 ~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~ 1110 (1198)
.++++..+-++||.|+||||+++.|+++..-. -|.+++-|.+
T Consensus 150 ~~~~~~~~~~~g~~~~gk~~~~~~~~~~~~~~--~i~in~s~~r 191 (362)
T d1svma_ 150 NIPKKRYWLFKGPIDSGKTTLAAALLELCGGK--ALNVNLPLDR 191 (362)
T ss_dssp CCTTCCEEEEECSTTSSHHHHHHHHHHHHCCE--EECCSSCTTT
T ss_pred CCCCcCeEEEECCCCCCHHHHHHHHHHHcCCC--EEEEECcchh
Confidence 45778899999999999999999999998632 3446666543
|
| >d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ATPase subunit of magnesium chelatase, BchI species: Rhodobacter capsulatus [TaxId: 1061]
Probab=83.85 E-value=0.14 Score=54.99 Aligned_cols=27 Identities=22% Similarity=0.357 Sum_probs=24.6
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhccCCC
Q 000984 412 GTTAALVGQSGSGKSTVISLIERFYDP 438 (1198)
Q Consensus 412 g~~~~ivG~~GsGKStl~~~l~g~~~~ 438 (1198)
|.-+.|+|+.|+|||||++.+.+++++
T Consensus 28 ~h~vLl~G~pG~GKT~lar~~~~iLp~ 54 (333)
T d1g8pa_ 28 IGGVLVFGDRGTGKSTAVRALAALLPE 54 (333)
T ss_dssp GCCEEEECCGGGCTTHHHHHHHHHSCC
T ss_pred CCeEEEECCCCccHHHHHHHHHHhCCC
Confidence 456899999999999999999999976
|
| >d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: NTPase P4 species: Bacteriophage phi-12 [TaxId: 161736]
Probab=83.76 E-value=0.2 Score=52.92 Aligned_cols=40 Identities=15% Similarity=0.216 Sum_probs=27.3
Q ss_pred EEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECC
Q 000984 407 ISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDG 447 (1198)
Q Consensus 407 l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g 447 (1198)
...++| .+.++||+|||||.|.++|.++..-...-+.++|
T Consensus 119 ~~~~~g-~~l~~G~pG~GKT~la~ala~~~~~~~~~~~~~~ 158 (321)
T d1w44a_ 119 HRYASG-MVIVTGKGNSGKTPLVHALGEALGGKDKYATVRF 158 (321)
T ss_dssp EEEESE-EEEEECSSSSCHHHHHHHHHHHHHTTSCCEEEEB
T ss_pred cccCCc-eEEEECCCCccHHHHHHHHHHHhcCCCCeEEEEh
Confidence 344444 5666899999999999999998632222344544
|
| >d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=83.69 E-value=0.23 Score=51.15 Aligned_cols=50 Identities=20% Similarity=0.316 Sum_probs=37.1
Q ss_pred EEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCe-EEECCeecCCcCHHHHh
Q 000984 408 SISSGTTAALVGQSGSGKSTVISLIERFYDPQAGE-VLIDGINLKEFQLQWIR 459 (1198)
Q Consensus 408 ~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~-i~i~g~~~~~~~~~~~r 459 (1198)
=++.|..+-|.||+|||||||+..++.......|. |+||... .++++.++
T Consensus 56 G~~~g~i~e~~G~~~~GKT~l~l~~~~~~q~~g~~~vyIDtE~--~~~~e~a~ 106 (269)
T d1mo6a1 56 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEH--ALDPDYAK 106 (269)
T ss_dssp SBCSSSEEEEECSSSSSHHHHHHHHHHHHHHTTCEEEEEESSC--CCCHHHHH
T ss_pred CcccceeEEEecCCCcHHHHHHHHHHHHHhcCCCEEEEEECCc--cCCHHHHH
Confidence 47889999999999999999998887766666665 5666643 34454443
|
| >d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: HCV helicase domain species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]
Probab=83.67 E-value=0.22 Score=45.38 Aligned_cols=22 Identities=36% Similarity=0.311 Sum_probs=17.3
Q ss_pred CCEEEEEcCCCCCHHHHHHHHh
Q 000984 1071 GKTVALVGESGSGKSTVVSLLQ 1092 (1198)
Q Consensus 1071 GekvaIVG~SGSGKSTL~~lL~ 1092 (1198)
.+..-|++|||||||+++-.+.
T Consensus 8 ~~~~ll~apTGsGKT~~~~~~~ 29 (136)
T d1a1va1 8 FQVAHLHAPTGSGKSTKVPAAY 29 (136)
T ss_dssp CEEEEEECCTTSCTTTHHHHHH
T ss_pred CCEEEEEeCCCCCHHHHHHHHH
Confidence 4555679999999999986554
|
| >d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=83.49 E-value=0.23 Score=52.20 Aligned_cols=22 Identities=32% Similarity=0.468 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcc
Q 000984 414 TAALVGQSGSGKSTVISLIERF 435 (1198)
Q Consensus 414 ~~~ivG~~GsGKStl~~~l~g~ 435 (1198)
++||||.+.||||||+++|.+-
T Consensus 12 kiGivG~Pn~GKSTlfnalT~~ 33 (296)
T d1ni3a1 12 KTGIVGMPNVGKSTFFRAITKS 33 (296)
T ss_dssp EEEEEECSSSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 6999999999999999999975
|
| >d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Deinococcus radiodurans [TaxId: 1299]
Probab=83.41 E-value=0.25 Score=50.95 Aligned_cols=41 Identities=24% Similarity=0.359 Sum_probs=32.7
Q ss_pred EEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCe-EEECCe
Q 000984 408 SISSGTTAALVGQSGSGKSTVISLIERFYDPQAGE-VLIDGI 448 (1198)
Q Consensus 408 ~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~-i~i~g~ 448 (1198)
=++.|.++-|.||+|||||||+..++....-..|. ++||..
T Consensus 53 Gip~g~itei~G~~~sGKT~l~l~~~~~aqk~g~~v~yiDtE 94 (268)
T d1xp8a1 53 GIPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAE 94 (268)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred CccCceEEEEecCCccchHHHHHHHHHHHHhCCCEEEEEECC
Confidence 46889999999999999999998888876555453 555653
|
| >d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein PH0525 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=83.29 E-value=0.25 Score=52.48 Aligned_cols=22 Identities=32% Similarity=0.400 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcc
Q 000984 414 TAALVGQSGSGKSTVISLIERF 435 (1198)
Q Consensus 414 ~~~ivG~~GsGKStl~~~l~g~ 435 (1198)
+|||||.+-+|||||+++|.|-
T Consensus 2 ~v~lvG~pn~GKStlfn~lt~~ 23 (319)
T d1wxqa1 2 EIGVVGKPNVGKSTFFSAATLV 23 (319)
T ss_dssp EEEEEECTTSSHHHHHHHHHC-
T ss_pred cEeEECCCCCCHHHHHHHHHCC
Confidence 5899999999999999999984
|
| >d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyguanosine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.24 E-value=0.25 Score=50.05 Aligned_cols=25 Identities=36% Similarity=0.603 Sum_probs=22.0
Q ss_pred CEEEEEcCCCCCHHHHHHHHhcccC
Q 000984 1072 KTVALVGESGSGKSTVVSLLQRFYD 1096 (1198)
Q Consensus 1072 ekvaIVG~SGSGKSTL~~lL~R~yd 1096 (1198)
+.|+|=|.-||||||++++|..-+.
T Consensus 3 k~IviEG~~GsGKST~~~~L~~~l~ 27 (241)
T d2ocpa1 3 RRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred eEEEEECCCCCcHHHHHHHHHHHHh
Confidence 3689999999999999999987664
|
| >d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Cow (Bos taurus), mitochondrial [TaxId: 9913]
Probab=83.09 E-value=0.26 Score=48.33 Aligned_cols=23 Identities=22% Similarity=0.466 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhccC
Q 000984 414 TAALVGQSGSGKSTVISLIERFY 436 (1198)
Q Consensus 414 ~~~ivG~~GsGKStl~~~l~g~~ 436 (1198)
-+||+|..++|||||+..|++..
T Consensus 5 ni~iiGHvd~GKSTL~~~l~~~~ 27 (196)
T d1d2ea3 5 NVGTIGHVDHGKTTLTAAITKIL 27 (196)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHH
T ss_pred EEEEEeCCCCcHHHHHHHHHHHH
Confidence 37999999999999999998743
|
| >d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6-like protein APE0152, N-terminal domain species: Aeropyrum pernix [TaxId: 56636]
Probab=83.03 E-value=0.15 Score=52.82 Aligned_cols=23 Identities=22% Similarity=0.341 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhccC
Q 000984 414 TAALVGQSGSGKSTVISLIERFY 436 (1198)
Q Consensus 414 ~~~ivG~~GsGKStl~~~l~g~~ 436 (1198)
.+.++||+|+||||+++.++..+
T Consensus 48 ~l~l~GppGtGKT~l~~~l~~~l 70 (287)
T d1w5sa2 48 IYGSIGRVGIGKTTLAKFTVKRV 70 (287)
T ss_dssp EEECTTCCSSSHHHHHHHHHHHH
T ss_pred EEEeECCCCCCHHHHHHHHHHHH
Confidence 35667999999999999999876
|
| >d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyguanosine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.86 E-value=0.25 Score=50.05 Aligned_cols=25 Identities=28% Similarity=0.501 Sum_probs=22.2
Q ss_pred CEEEEEcCCCCcHHHHHHHHhccCC
Q 000984 413 TTAALVGQSGSGKSTVISLIERFYD 437 (1198)
Q Consensus 413 ~~~~ivG~~GsGKStl~~~l~g~~~ 437 (1198)
.+++|-|.-||||||+++.|...+.
T Consensus 3 k~IviEG~~GsGKST~~~~L~~~l~ 27 (241)
T d2ocpa1 3 RRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred eEEEEECCCCCcHHHHHHHHHHHHh
Confidence 4789999999999999999997663
|
| >d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Thermus thermophilus [TaxId: 274]
Probab=82.77 E-value=0.35 Score=51.18 Aligned_cols=38 Identities=24% Similarity=0.411 Sum_probs=29.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhccc-CCCCCeEEECCcccC
Q 000984 1073 TVALVGESGSGKSTVVSLLQRFY-DPDAGHITLDGVEIQ 1110 (1198)
Q Consensus 1073 kvaIVG~SGSGKSTL~~lL~R~y-dp~~G~I~IDG~dI~ 1110 (1198)
.+-++||||+|||.+++.|.+.. .....-+.+|..+..
T Consensus 55 ~~lf~Gp~G~GKt~lak~la~~l~~~~~~~~~~~~~~~~ 93 (315)
T d1qvra3 55 SFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYM 93 (315)
T ss_dssp EEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEECTTTCC
T ss_pred EEEEECCCcchHHHHHHHHHHHhcCCCcceEEEeccccc
Confidence 46789999999999999999964 334456778765543
|
| >d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CED-4, NB-ARC domain species: Caenorhabditis elegans [TaxId: 6239]
Probab=82.45 E-value=0.3 Score=50.80 Aligned_cols=24 Identities=33% Similarity=0.318 Sum_probs=21.1
Q ss_pred CCEEEEEcCCCCCHHHHHHHHhcc
Q 000984 1071 GKTVALVGESGSGKSTVVSLLQRF 1094 (1198)
Q Consensus 1071 GekvaIVG~SGSGKSTL~~lL~R~ 1094 (1198)
...|+|+|.-|.|||||++.+++-
T Consensus 44 ~~~v~I~GmgGiGKTtLA~~v~~~ 67 (277)
T d2a5yb3 44 SFFLFLHGRAGSGKSVIASQALSK 67 (277)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHh
Confidence 458999999999999999988653
|
| >d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Thermus thermophilus [TaxId: 274]
Probab=82.13 E-value=0.35 Score=49.22 Aligned_cols=35 Identities=29% Similarity=0.371 Sum_probs=27.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCccc
Q 000984 1073 TVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEI 1109 (1198)
Q Consensus 1073 kvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI 1109 (1198)
-+-+.||+|+|||++++.|.+-+... -+.|++.++
T Consensus 44 giLl~GppGtGKT~la~aia~~~~~~--~~~i~~~~l 78 (247)
T d1ixza_ 44 GVLLVGPPGVGKTHLARAVAGEARVP--FITASGSDF 78 (247)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHTTCC--EEEEEHHHH
T ss_pred eEEEecCCCCChhHHHHHHHHHcCCC--EEEEEhHHh
Confidence 47899999999999999999876532 466766555
|
| >d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Helicase-like "domain" of reverse gyrase domain: Helicase-like "domain" of reverse gyrase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=82.08 E-value=0.21 Score=50.53 Aligned_cols=24 Identities=17% Similarity=0.231 Sum_probs=19.0
Q ss_pred eCCCEEEEEcCCCCCHHHHHHHHh
Q 000984 1069 RAGKTVALVGESGSGKSTVVSLLQ 1092 (1198)
Q Consensus 1069 ~~GekvaIVG~SGSGKSTL~~lL~ 1092 (1198)
-.|+-+.|++|||+|||+...+..
T Consensus 56 l~g~~~~i~apTGsGKT~~~~~~~ 79 (237)
T d1gkub1 56 LRKESFAATAPTGVGKTSFGLAMS 79 (237)
T ss_dssp HTTCCEECCCCBTSCSHHHHHHHH
T ss_pred HCCCCEEEEecCCChHHHHHHHHH
Confidence 357889999999999998654443
|
| >d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=82.00 E-value=0.33 Score=49.79 Aligned_cols=36 Identities=22% Similarity=0.388 Sum_probs=26.4
Q ss_pred CEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCccc
Q 000984 1072 KTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEI 1109 (1198)
Q Consensus 1072 ekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI 1109 (1198)
.-+-+.||+|+|||++++.+.+..... -+.+++.++
T Consensus 39 ~giLL~GppGtGKT~l~~ala~~~~~~--~~~i~~~~l 74 (258)
T d1e32a2 39 RGILLYGPPGTGKTLIARAVANETGAF--FFLINGPEI 74 (258)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHTTCE--EEEECHHHH
T ss_pred ceeEEecCCCCCchHHHHHHHHHhCCe--EEEEEchhh
Confidence 347899999999999999999965432 344555444
|
| >d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=81.98 E-value=0.27 Score=50.03 Aligned_cols=22 Identities=32% Similarity=0.391 Sum_probs=19.9
Q ss_pred EEEEcCCCCCHHHHHHHHhccc
Q 000984 1074 VALVGESGSGKSTVVSLLQRFY 1095 (1198)
Q Consensus 1074 vaIVG~SGSGKSTL~~lL~R~y 1095 (1198)
+-|+||.|+||||+++++++-+
T Consensus 36 lll~Gp~G~GKTt~~~~la~~l 57 (252)
T d1sxje2 36 LLLYGPNGTGKKTRCMALLESI 57 (252)
T ss_dssp EEEECSTTSSHHHHHHTHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHhh
Confidence 6799999999999999998753
|
| >d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: YFV helicase domain species: Yellow fever virus [TaxId: 11089]
Probab=81.45 E-value=0.2 Score=45.52 Aligned_cols=28 Identities=25% Similarity=0.269 Sum_probs=21.0
Q ss_pred EeCCCEEEEEcCCCCcHHHHH-HHHhccC
Q 000984 409 ISSGTTAALVGQSGSGKSTVI-SLIERFY 436 (1198)
Q Consensus 409 i~~g~~~~ivG~~GsGKStl~-~~l~g~~ 436 (1198)
+++|+.+.|++|+|||||..+ ..+....
T Consensus 4 l~~~~~~il~~~tGsGKT~~~~~~~~~~~ 32 (140)
T d1yksa1 4 LKKGMTTVLDFHPGAGKTRRFLPQILAEC 32 (140)
T ss_dssp TSTTCEEEECCCTTSSTTTTHHHHHHHHH
T ss_pred HHcCCcEEEEcCCCCChhHHHHHHHHHHh
Confidence 467999999999999999554 3444433
|
| >d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Haemophilus influenzae [TaxId: 727]
Probab=81.09 E-value=0.55 Score=48.63 Aligned_cols=22 Identities=27% Similarity=0.489 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcc
Q 000984 414 TAALVGQSGSGKSTVISLIERF 435 (1198)
Q Consensus 414 ~~~ivG~~GsGKStl~~~l~g~ 435 (1198)
++||||-.-+|||||+++|.+-
T Consensus 4 ~~GivG~Pn~GKSTlf~~lt~~ 25 (278)
T d1jala1 4 KCGIVGLPNVGKSTLFNALTKA 25 (278)
T ss_dssp EEEEECCTTSSHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHCC
Confidence 7999999999999999999963
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| >d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Chromosomal replication initiation factor DnaA species: Aquifex aeolicus [TaxId: 63363]
Probab=80.92 E-value=0.34 Score=48.14 Aligned_cols=43 Identities=14% Similarity=0.301 Sum_probs=28.6
Q ss_pred ccCCCEEEEeCCCCCC-CHHhHHHHHHHHHHHhC-CCeEEEEecC
Q 000984 538 LKDPRILLLDEATSAL-DAESEKVVQEALDRIMV-NRTTVIVAHR 580 (1198)
Q Consensus 538 ~~~~~illlDe~ts~l-D~~~~~~i~~~i~~~~~-~~t~i~itH~ 580 (1198)
+++.+++++||.=.-- +...+..+...+..... ++.+|+.+.+
T Consensus 95 ~~~~dll~iDDi~~i~~~~~~~~~lf~lin~~~~~~~~iiits~~ 139 (213)
T d1l8qa2 95 YKSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDR 139 (213)
T ss_dssp HHTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESS
T ss_pred HhhccchhhhhhhhhcCchHHHHHHHHHHHHHhhccceEEEecCC
Confidence 5689999999984433 45567777777776654 4555555543
|
| >d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6-like protein APE0152, N-terminal domain species: Aeropyrum pernix [TaxId: 56636]
Probab=80.76 E-value=0.25 Score=50.97 Aligned_cols=22 Identities=23% Similarity=0.374 Sum_probs=19.2
Q ss_pred EEEEcCCCCCHHHHHHHHhccc
Q 000984 1074 VALVGESGSGKSTVVSLLQRFY 1095 (1198)
Q Consensus 1074 vaIVG~SGSGKSTL~~lL~R~y 1095 (1198)
+.|+||+|+||||+++.+++-+
T Consensus 49 l~l~GppGtGKT~l~~~l~~~l 70 (287)
T d1w5sa2 49 YGSIGRVGIGKTTLAKFTVKRV 70 (287)
T ss_dssp EECTTCCSSSHHHHHHHHHHHH
T ss_pred EEeECCCCCCHHHHHHHHHHHH
Confidence 5567999999999999999864
|
| >d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=80.45 E-value=0.31 Score=51.71 Aligned_cols=32 Identities=19% Similarity=0.278 Sum_probs=24.9
Q ss_pred CEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEEC
Q 000984 413 TTAALVGQSGSGKSTVISLIERFYDPQAGEVLID 446 (1198)
Q Consensus 413 ~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~ 446 (1198)
..+.++||+|+|||.|++.|...+.. --|.+|
T Consensus 53 ~~~lf~Gp~GvGKT~lak~la~~l~~--~~i~~d 84 (315)
T d1r6bx3 53 GSFLFAGPTGVGKTEVTVQLSKALGI--ELLRFD 84 (315)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHTC--EEEEEE
T ss_pred eEEEEECCCcchhHHHHHHHHhhccC--CeeEec
Confidence 35789999999999999999998632 245454
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| >d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=80.10 E-value=0.39 Score=46.60 Aligned_cols=22 Identities=32% Similarity=0.514 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhcc
Q 000984 1073 TVALVGESGSGKSTVVSLLQRF 1094 (1198)
Q Consensus 1073 kvaIVG~SGSGKSTL~~lL~R~ 1094 (1198)
||.++|.+|+|||||++-+..-
T Consensus 4 Kiv~lG~~~vGKTsll~r~~~~ 25 (200)
T d2bcjq2 4 KLLLLGTGESGKSTFIKQMRII 25 (200)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 7899999999999999877543
|